Query 001438
Match_columns 1077
No_of_seqs 613 out of 3999
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 00:49:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001438.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001438hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0055 Multidrug/pheromone ex 100.0 1E-168 3E-173 1515.7 110.4 1029 40-1077 12-1047(1228)
2 KOG0054 Multidrug resistance-a 100.0 5E-134 1E-138 1246.4 100.2 979 39-1077 187-1197(1381)
3 PTZ00265 multidrug resistance 100.0 2E-129 5E-134 1266.7 130.1 1023 39-1073 43-1221(1466)
4 PLN03130 ABC transporter C fam 100.0 8E-116 2E-120 1150.6 122.0 904 127-1077 367-1296(1622)
5 PLN03232 ABC transporter C fam 100.0 3E-115 7E-120 1146.7 119.4 903 126-1077 366-1293(1495)
6 TIGR00957 MRP_assoc_pro multi 100.0 1E-111 3E-116 1114.2 120.7 992 40-1077 304-1343(1522)
7 PTZ00243 ABC transporter; Prov 100.0 2E-105 5E-110 1051.1 121.6 998 41-1077 232-1367(1560)
8 TIGR01271 CFTR_protein cystic 100.0 2E-105 5E-110 1051.1 118.1 987 40-1077 67-1275(1490)
9 KOG0058 Peptide exporter, ABC 100.0 6E-106 1E-110 921.8 68.3 573 42-623 134-707 (716)
10 KOG0055 Multidrug/pheromone ex 100.0 3E-103 7E-108 947.9 71.4 579 39-621 648-1226(1228)
11 COG2274 SunT ABC-type bacterio 100.0 1.3E-89 2.8E-94 824.4 70.0 550 58-620 159-708 (709)
12 PRK11174 cysteine/glutathione 100.0 1.2E-84 2.7E-89 797.1 75.7 567 43-621 10-585 (588)
13 PTZ00265 multidrug resistance 100.0 1.8E-84 4E-89 846.0 76.7 571 42-620 812-1465(1466)
14 TIGR00958 3a01208 Conjugate Tr 100.0 2.5E-83 5.5E-88 795.6 75.0 565 40-616 146-710 (711)
15 COG1132 MdlB ABC-type multidru 100.0 1.4E-82 3.1E-87 774.1 76.2 551 57-621 15-565 (567)
16 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 2.2E-81 4.7E-86 779.8 77.0 543 63-620 143-685 (686)
17 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 1.5E-81 3.2E-86 785.0 72.7 541 63-617 164-709 (710)
18 TIGR01193 bacteriocin_ABC ABC- 100.0 1.7E-81 3.8E-86 783.4 73.0 565 41-618 142-707 (708)
19 PRK11160 cysteine/glutathione 100.0 2.8E-80 6.2E-85 752.0 75.8 565 45-618 6-572 (574)
20 TIGR03375 type_I_sec_LssB type 100.0 7.3E-80 1.6E-84 767.1 74.4 535 64-608 155-689 (694)
21 COG4988 CydD ABC-type transpor 100.0 3.4E-79 7.3E-84 689.9 70.9 551 62-622 6-557 (559)
22 PRK11176 lipid transporter ATP 100.0 4.4E-79 9.6E-84 747.7 76.9 547 63-620 32-579 (582)
23 TIGR01846 type_I_sec_HlyB type 100.0 1.9E-78 4.1E-83 753.6 76.5 541 69-620 152-692 (694)
24 PRK10790 putative multidrug tr 100.0 4.6E-78 1E-82 738.9 78.6 566 43-622 11-577 (592)
25 TIGR02203 MsbA_lipidA lipid A 100.0 9.7E-78 2.1E-82 735.3 76.3 553 57-620 15-568 (571)
26 PRK13657 cyclic beta-1,2-gluca 100.0 4.9E-77 1.1E-81 728.7 78.2 565 43-621 7-571 (588)
27 TIGR01192 chvA glucan exporter 100.0 8E-77 1.7E-81 722.5 77.7 565 43-621 7-571 (585)
28 PRK10789 putative multidrug tr 100.0 2.9E-77 6.2E-82 725.7 73.6 537 75-621 14-551 (569)
29 TIGR02868 CydC thiol reductant 100.0 1.3E-77 2.8E-82 725.8 69.4 511 60-579 17-529 (529)
30 KOG0057 Mitochondrial Fe/S clu 100.0 9.9E-78 2.1E-82 664.8 60.8 547 66-621 40-587 (591)
31 TIGR02204 MsbA_rel ABC transpo 100.0 1.2E-76 2.6E-81 725.9 76.3 555 59-620 21-575 (576)
32 KOG0056 Heavy metal exporter H 100.0 1E-79 2.3E-84 662.0 38.4 550 65-623 224-777 (790)
33 TIGR00957 MRP_assoc_pro multi 100.0 1.4E-76 3E-81 781.7 75.6 510 103-619 1007-1519(1522)
34 COG4987 CydC ABC-type transpor 100.0 2.5E-75 5.4E-80 645.6 65.8 555 54-618 14-571 (573)
35 TIGR02857 CydD thiol reductant 100.0 2.1E-75 4.6E-80 706.5 71.0 524 59-591 6-529 (529)
36 PLN03130 ABC transporter C fam 100.0 1.9E-75 4.1E-80 768.7 75.8 509 103-621 955-1475(1622)
37 PTZ00243 ABC transporter; Prov 100.0 2.3E-74 4.9E-79 757.9 75.2 516 103-621 1000-1547(1560)
38 TIGR01842 type_I_sec_PrtD type 100.0 6.1E-74 1.3E-78 694.3 73.2 522 69-607 19-542 (544)
39 PLN03232 ABC transporter C fam 100.0 1.4E-74 3E-79 761.7 73.2 513 102-621 951-1472(1495)
40 KOG0054 Multidrug resistance-a 100.0 1.8E-74 4E-79 716.1 62.4 512 101-619 858-1374(1381)
41 TIGR01271 CFTR_protein cystic 100.0 2.3E-70 5.1E-75 720.2 75.4 502 111-622 935-1454(1490)
42 TIGR01194 cyc_pep_trnsptr cycl 100.0 5.4E-70 1.2E-74 659.4 67.1 534 42-599 4-551 (555)
43 COG5265 ATM1 ABC-type transpor 100.0 8.7E-72 1.9E-76 597.3 41.8 491 123-618 4-496 (497)
44 COG4618 ArpD ABC-type protease 100.0 1.8E-67 4E-72 576.8 51.6 520 74-608 41-561 (580)
45 PRK10522 multidrug transporter 100.0 9.5E-65 2.1E-69 613.8 67.7 461 115-599 62-530 (547)
46 TIGR00954 3a01203 Peroxysomal 100.0 7.5E-62 1.6E-66 595.5 63.2 531 42-593 78-653 (659)
47 KOG0058 Peptide exporter, ABC 100.0 5.6E-61 1.2E-65 551.2 47.0 391 683-1077 134-525 (716)
48 COG1126 GlnQ ABC-type polar am 100.0 3.5E-52 7.5E-57 412.3 22.9 221 381-612 2-230 (240)
49 COG1135 AbcC ABC-type metal io 100.0 2.6E-50 5.5E-55 419.5 22.4 226 382-612 2-236 (339)
50 COG1125 OpuBA ABC-type proline 100.0 7.3E-50 1.6E-54 402.8 20.8 226 382-615 2-233 (309)
51 COG1117 PstB ABC-type phosphat 100.0 4E-49 8.7E-54 387.9 20.6 221 380-610 6-240 (253)
52 cd03289 ABCC_CFTR2 The CFTR su 100.0 1.6E-48 3.5E-53 426.0 27.7 237 380-620 1-237 (275)
53 COG1123 ATPase components of v 100.0 1.5E-47 3.2E-52 435.9 30.5 229 381-615 5-252 (539)
54 PRK14257 phosphate ABC transpo 100.0 2.3E-47 5E-52 427.9 28.5 232 376-610 75-316 (329)
55 COG4615 PvdE ABC-type sideroph 100.0 2.9E-43 6.4E-48 373.1 46.6 465 113-599 60-529 (546)
56 COG1127 Ttg2A ABC-type transpo 100.0 2.8E-46 6.1E-51 376.2 22.5 228 380-617 7-245 (263)
57 COG1120 FepC ABC-type cobalami 100.0 2.1E-46 4.6E-51 393.3 21.4 214 381-608 2-229 (258)
58 cd03252 ABCC_Hemolysin The ABC 100.0 1.8E-45 3.9E-50 398.4 27.6 234 382-617 1-234 (237)
59 TIGR00958 3a01208 Conjugate Tr 100.0 7.2E-43 1.6E-47 433.9 51.9 391 683-1077 148-538 (711)
60 COG3839 MalK ABC-type sugar tr 100.0 2E-45 4.2E-50 400.9 23.1 218 381-614 3-230 (338)
61 PRK13549 xylose transporter AT 100.0 8.6E-45 1.9E-49 435.6 30.4 211 381-601 5-226 (506)
62 COG1136 SalX ABC-type antimicr 100.0 4.8E-45 1E-49 375.5 23.3 210 382-598 2-222 (226)
63 COG3842 PotA ABC-type spermidi 100.0 1.9E-45 4.1E-50 403.2 20.6 220 380-615 4-234 (352)
64 cd03288 ABCC_SUR2 The SUR doma 100.0 2.1E-44 4.7E-49 393.8 28.6 240 377-618 15-254 (257)
65 COG3638 ABC-type phosphate/pho 100.0 4.9E-45 1.1E-49 366.3 21.5 216 381-606 3-236 (258)
66 COG1116 TauB ABC-type nitrate/ 100.0 4.8E-45 1E-49 374.4 21.7 199 381-594 3-207 (248)
67 TIGR02314 ABC_MetN D-methionin 100.0 1.1E-44 2.3E-49 406.5 25.9 225 382-613 2-236 (343)
68 cd03251 ABCC_MsbA MsbA is an e 100.0 2.2E-44 4.8E-49 389.3 26.5 231 382-614 1-231 (234)
69 COG2274 SunT ABC-type bacterio 100.0 5.8E-42 1.3E-46 412.6 49.9 386 686-1077 144-530 (709)
70 COG1124 DppF ABC-type dipeptid 100.0 1.3E-44 2.8E-49 366.8 22.7 231 381-617 3-241 (252)
71 cd03254 ABCC_Glucan_exporter_l 100.0 3.8E-44 8.2E-49 386.1 27.4 227 380-608 1-227 (229)
72 cd03253 ABCC_ATM1_transporter 100.0 4.3E-44 9.3E-49 387.6 27.5 232 382-616 1-232 (236)
73 TIGR01257 rim_protein retinal- 100.0 3.7E-41 8.1E-46 437.3 59.9 220 380-608 927-1150(2272)
74 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 4.4E-44 9.6E-49 387.8 27.0 227 382-608 1-227 (238)
75 COG2884 FtsE Predicted ATPase 100.0 9.5E-45 2.1E-49 350.6 19.1 207 382-601 2-220 (223)
76 PRK10261 glutathione transport 100.0 8.5E-44 1.8E-48 434.7 30.2 224 380-607 11-258 (623)
77 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 3.8E-44 8.3E-49 373.9 22.9 210 381-608 4-228 (254)
78 COG3840 ThiQ ABC-type thiamine 100.0 3.4E-44 7.4E-49 343.3 20.4 209 382-608 2-220 (231)
79 cd03244 ABCC_MRP_domain2 Domai 100.0 1.4E-43 3E-48 379.5 26.5 220 380-601 1-220 (221)
80 PRK09700 D-allose transporter 100.0 2E-43 4.3E-48 424.7 30.5 213 381-603 5-230 (510)
81 COG1122 CbiO ABC-type cobalt t 100.0 5.7E-44 1.2E-48 376.3 22.3 215 381-608 3-229 (235)
82 PRK10982 galactose/methyl gala 100.0 2.1E-43 4.5E-48 422.5 29.4 209 384-602 1-218 (491)
83 TIGR02633 xylG D-xylose ABC tr 100.0 3.6E-43 7.8E-48 421.7 30.9 210 382-600 2-223 (500)
84 COG1118 CysA ABC-type sulfate/ 100.0 4.5E-44 9.8E-49 371.5 19.2 223 381-613 2-233 (345)
85 cd03245 ABCC_bacteriocin_expor 100.0 3.7E-43 8.1E-48 375.9 26.6 219 381-600 2-220 (220)
86 PRK13631 cbiO cobalt transport 100.0 3.1E-43 6.7E-48 393.5 26.6 222 380-608 20-266 (320)
87 PRK15134 microcin C ABC transp 100.0 8.1E-43 1.8E-47 420.8 31.2 222 381-606 5-245 (529)
88 PRK10762 D-ribose transporter 100.0 8.4E-43 1.8E-47 417.9 30.9 211 381-601 4-224 (501)
89 TIGR03269 met_CoM_red_A2 methy 100.0 5.2E-43 1.1E-47 422.0 28.3 210 382-601 1-252 (520)
90 TIGR02868 CydC thiol reductant 100.0 2E-40 4.3E-45 401.4 50.9 383 687-1077 4-392 (529)
91 PRK10938 putative molybdenum t 100.0 1.2E-42 2.5E-47 416.2 30.8 209 381-605 3-222 (490)
92 PRK11288 araG L-arabinose tran 100.0 1.2E-42 2.6E-47 416.5 30.5 209 381-599 4-221 (501)
93 PRK11650 ugpC glycerol-3-phosp 100.0 7E-43 1.5E-47 395.5 26.4 223 381-614 3-231 (356)
94 cd03248 ABCC_TAP TAP, the Tran 100.0 7E-43 1.5E-47 375.3 24.7 219 378-596 8-226 (226)
95 PRK11432 fbpC ferric transport 100.0 7.7E-43 1.7E-47 393.8 25.7 223 380-614 5-233 (351)
96 cd03261 ABC_Org_Solvent_Resist 100.0 9.8E-43 2.1E-47 376.3 24.2 217 382-608 1-227 (235)
97 TIGR00956 3a01205 Pleiotropic 100.0 2.1E-41 4.6E-46 442.5 41.4 207 397-606 74-299 (1394)
98 TIGR01186 proV glycine betaine 100.0 6.3E-43 1.4E-47 394.0 23.3 212 397-615 6-227 (363)
99 TIGR03265 PhnT2 putative 2-ami 100.0 1.2E-42 2.5E-47 393.2 25.2 221 381-613 4-230 (353)
100 PRK11153 metN DL-methionine tr 100.0 1.8E-42 3.9E-47 392.0 26.0 225 382-613 2-236 (343)
101 PRK13650 cbiO cobalt transport 100.0 2.4E-42 5.3E-47 381.4 25.7 221 381-608 4-230 (279)
102 PRK11160 cysteine/glutathione 100.0 1.2E-39 2.7E-44 396.2 51.0 389 685-1077 5-397 (574)
103 PRK15064 ABC transporter ATP-b 100.0 1.4E-41 3.1E-46 410.1 33.7 208 382-607 2-242 (530)
104 cd03260 ABC_PstB_phosphate_tra 100.0 1.5E-42 3.2E-47 373.1 22.4 214 382-605 1-227 (227)
105 PRK14269 phosphate ABC transpo 100.0 4.9E-42 1.1E-46 373.1 26.6 224 381-610 2-233 (246)
106 PRK13637 cbiO cobalt transport 100.0 4.1E-42 9E-47 380.8 25.8 222 382-608 3-235 (287)
107 PRK09452 potA putrescine/sperm 100.0 3.5E-42 7.5E-47 390.9 25.7 222 380-613 13-240 (375)
108 PRK13643 cbiO cobalt transport 100.0 4.1E-42 8.9E-47 381.1 25.4 221 382-608 2-234 (288)
109 TIGR03258 PhnT 2-aminoethylpho 100.0 3E-42 6.4E-47 390.2 24.6 222 380-613 4-234 (362)
110 PRK11819 putative ABC transpor 100.0 4E-41 8.7E-46 407.3 36.1 208 381-606 6-249 (556)
111 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 3.2E-41 6.8E-46 408.3 34.9 208 381-606 4-247 (552)
112 PRK14273 phosphate ABC transpo 100.0 7E-42 1.5E-46 374.0 26.3 229 380-614 6-245 (254)
113 cd03219 ABC_Mj1267_LivG_branch 100.0 3.1E-42 6.8E-47 373.0 23.3 217 382-608 1-233 (236)
114 cd03369 ABCC_NFT1 Domain 2 of 100.0 8.3E-42 1.8E-46 361.6 25.9 204 379-602 4-207 (207)
115 COG4178 ABC-type uncharacteriz 100.0 1.7E-38 3.7E-43 366.4 54.7 470 103-592 88-587 (604)
116 PRK10851 sulfate/thiosulfate t 100.0 7.9E-42 1.7E-46 386.4 26.6 222 381-614 2-233 (353)
117 TIGR00972 3a0107s01c2 phosphat 100.0 8.6E-42 1.9E-46 371.7 25.7 225 382-612 2-237 (247)
118 cd03296 ABC_CysA_sulfate_impor 100.0 7.9E-42 1.7E-46 370.0 25.2 216 382-609 3-228 (239)
119 TIGR01193 bacteriocin_ABC ABC- 100.0 2.3E-39 4.9E-44 404.7 51.1 387 684-1077 144-531 (708)
120 PRK14250 phosphate ABC transpo 100.0 1.2E-41 2.6E-46 368.6 26.6 224 381-615 3-229 (241)
121 PRK10744 pstB phosphate transp 100.0 1.4E-41 3E-46 372.5 27.1 229 379-613 11-250 (260)
122 PRK13646 cbiO cobalt transport 100.0 7.8E-42 1.7E-46 378.8 25.1 220 382-608 3-236 (286)
123 cd03224 ABC_TM1139_LivF_branch 100.0 7.7E-42 1.7E-46 366.5 24.2 217 382-607 1-221 (222)
124 PRK13634 cbiO cobalt transport 100.0 8.6E-42 1.9E-46 378.9 24.9 221 382-608 3-236 (290)
125 PRK13647 cbiO cobalt transport 100.0 1E-41 2.3E-46 375.3 25.1 216 381-605 4-225 (274)
126 cd03295 ABC_OpuCA_Osmoprotecti 100.0 1E-41 2.2E-46 369.9 24.6 220 382-608 1-226 (242)
127 PRK14242 phosphate transporter 100.0 1.4E-41 3E-46 371.7 25.7 224 381-610 6-240 (253)
128 PRK15079 oligopeptide ABC tran 100.0 1.2E-41 2.7E-46 381.9 25.4 230 381-616 8-260 (331)
129 PRK11000 maltose/maltodextrin 100.0 1E-41 2.2E-46 388.9 24.9 221 381-613 3-229 (369)
130 COG4175 ProV ABC-type proline/ 100.0 4E-42 8.6E-47 356.7 19.3 225 381-616 4-263 (386)
131 PRK13537 nodulation ABC transp 100.0 9.8E-42 2.1E-46 380.3 24.0 218 380-608 6-228 (306)
132 PRK11607 potG putrescine trans 100.0 1.9E-41 4.2E-46 385.6 26.7 224 379-614 17-246 (377)
133 cd03258 ABC_MetN_methionine_tr 100.0 1.2E-41 2.7E-46 367.4 23.9 220 382-608 2-231 (233)
134 COG4555 NatA ABC-type Na+ tran 100.0 3E-42 6.6E-47 335.9 16.9 219 382-608 2-223 (245)
135 PRK13651 cobalt transporter AT 100.0 1.6E-41 3.4E-46 377.6 24.8 221 382-608 3-255 (305)
136 COG0410 LivF ABC-type branched 100.0 2.1E-41 4.6E-46 341.2 23.2 220 381-608 3-227 (237)
137 cd03263 ABC_subfamily_A The AB 100.0 1.1E-41 2.5E-46 364.5 22.6 215 382-605 1-219 (220)
138 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 7.2E-39 1.6E-43 398.8 51.2 387 684-1077 123-510 (686)
139 cd03256 ABC_PhnC_transporter A 100.0 2.3E-41 5E-46 367.6 25.2 215 382-606 1-233 (241)
140 PRK14268 phosphate ABC transpo 100.0 2.5E-41 5.5E-46 370.0 25.6 228 380-613 11-248 (258)
141 cd03259 ABC_Carb_Solutes_like 100.0 9.3E-42 2E-46 363.1 21.5 207 382-600 1-213 (213)
142 PRK09536 btuD corrinoid ABC tr 100.0 1.9E-41 4.2E-46 386.6 25.2 214 381-608 3-229 (402)
143 TIGR00960 3a0501s02 Type II (G 100.0 1E-41 2.3E-46 363.5 21.5 207 382-596 2-216 (216)
144 TIGR02315 ABC_phnC phosphonate 100.0 3E-41 6.5E-46 367.0 25.6 214 382-605 2-233 (243)
145 cd03294 ABC_Pro_Gly_Bertaine T 100.0 1.3E-41 2.9E-46 373.8 22.9 222 383-614 26-257 (269)
146 PRK14247 phosphate ABC transpo 100.0 4.1E-41 8.9E-46 367.2 26.5 227 381-613 3-240 (250)
147 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 3.1E-41 6.7E-46 364.6 25.1 216 382-608 2-222 (236)
148 PRK14235 phosphate transporter 100.0 4.3E-41 9.3E-46 369.6 26.4 226 379-610 17-254 (267)
149 PRK14259 phosphate ABC transpo 100.0 6E-41 1.3E-45 368.6 27.5 228 380-613 12-259 (269)
150 PRK10070 glycine betaine trans 100.0 2.3E-41 5E-46 385.7 25.0 210 398-614 42-261 (400)
151 PRK09473 oppD oligopeptide tra 100.0 2.4E-41 5.2E-46 379.9 24.8 232 381-617 12-261 (330)
152 PRK13635 cbiO cobalt transport 100.0 3.6E-41 7.8E-46 371.8 25.8 220 381-608 5-230 (279)
153 cd03218 ABC_YhbG The ABC trans 100.0 2E-41 4.3E-46 365.7 23.2 216 382-607 1-222 (232)
154 PRK14248 phosphate ABC transpo 100.0 5.8E-41 1.3E-45 369.3 27.2 227 380-612 20-257 (268)
155 PRK14267 phosphate ABC transpo 100.0 4.1E-41 8.8E-46 367.9 25.7 223 381-609 4-239 (253)
156 PRK13636 cbiO cobalt transport 100.0 3.1E-41 6.7E-46 373.4 24.9 219 381-608 5-232 (283)
157 PRK11174 cysteine/glutathione 100.0 9.5E-39 2.1E-43 391.7 49.5 387 684-1077 10-406 (588)
158 PRK14274 phosphate ABC transpo 100.0 5E-41 1.1E-45 368.1 26.0 227 381-613 12-249 (259)
159 cd03266 ABC_NatA_sodium_export 100.0 2.3E-41 4.9E-46 361.6 22.7 211 382-600 2-218 (218)
160 TIGR03415 ABC_choXWV_ATP choli 100.0 2.9E-41 6.3E-46 381.9 24.7 212 397-615 37-262 (382)
161 PRK11629 lolD lipoprotein tran 100.0 3.6E-41 7.8E-46 363.4 24.3 214 381-601 5-228 (233)
162 COG1132 MdlB ABC-type multidru 100.0 1.7E-38 3.7E-43 387.1 50.9 381 686-1077 6-386 (567)
163 PRK11831 putative ABC transpor 100.0 3.8E-41 8.1E-46 370.5 24.5 227 381-617 7-243 (269)
164 PRK13642 cbiO cobalt transport 100.0 4.8E-41 1E-45 371.0 25.1 221 381-608 4-230 (277)
165 PRK14240 phosphate transporter 100.0 7E-41 1.5E-45 365.4 26.1 227 380-612 2-239 (250)
166 TIGR03375 type_I_sec_LssB type 100.0 1.7E-38 3.8E-43 395.9 51.1 386 685-1077 136-522 (694)
167 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 1.7E-41 3.6E-46 362.7 20.6 208 382-596 1-218 (218)
168 PRK14249 phosphate ABC transpo 100.0 9.6E-41 2.1E-45 364.3 26.9 224 381-610 4-238 (251)
169 cd03265 ABC_DrrA DrrA is the A 100.0 3.1E-41 6.8E-46 360.7 22.6 213 382-605 1-219 (220)
170 PRK14238 phosphate transporter 100.0 8.8E-41 1.9E-45 367.7 26.7 228 380-612 23-260 (271)
171 PRK13632 cbiO cobalt transport 100.0 5.8E-41 1.3E-45 369.4 25.2 220 381-608 7-232 (271)
172 TIGR01846 type_I_sec_HlyB type 100.0 2.1E-38 4.6E-43 394.7 51.3 388 684-1077 127-514 (694)
173 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 1.7E-38 3.8E-43 397.2 50.8 388 684-1077 142-536 (710)
174 PRK14245 phosphate ABC transpo 100.0 7.4E-41 1.6E-45 365.0 25.6 226 381-612 3-239 (250)
175 cd03291 ABCC_CFTR1 The CFTR su 100.0 2.3E-40 5E-45 363.2 29.3 218 377-614 35-253 (282)
176 TIGR02857 CydD thiol reductant 100.0 3.1E-38 6.6E-43 382.3 50.8 378 695-1077 2-379 (529)
177 PRK14251 phosphate ABC transpo 100.0 8.7E-41 1.9E-45 364.9 25.7 228 381-614 4-242 (251)
178 PRK13644 cbiO cobalt transport 100.0 7.6E-41 1.6E-45 368.5 25.4 218 382-608 2-225 (274)
179 PRK14237 phosphate transporter 100.0 1.1E-40 2.3E-45 366.5 26.5 225 379-609 18-253 (267)
180 TIGR02769 nickel_nikE nickel i 100.0 6.8E-41 1.5E-45 367.9 24.9 229 381-616 2-249 (265)
181 PRK11022 dppD dipeptide transp 100.0 6.7E-41 1.5E-45 376.1 25.3 233 381-617 3-253 (326)
182 PRK11308 dppF dipeptide transp 100.0 6.6E-41 1.4E-45 375.9 25.2 231 381-617 5-254 (327)
183 TIGR02211 LolD_lipo_ex lipopro 100.0 4.8E-41 1E-45 359.9 22.9 209 382-597 2-220 (221)
184 PRK11614 livF leucine/isoleuci 100.0 8.9E-41 1.9E-45 361.5 25.2 218 381-607 5-226 (237)
185 PRK14236 phosphate transporter 100.0 1.2E-40 2.5E-45 367.2 26.6 225 379-609 23-258 (272)
186 PRK14261 phosphate ABC transpo 100.0 9.4E-41 2E-45 364.9 25.6 229 381-615 6-245 (253)
187 TIGR03410 urea_trans_UrtE urea 100.0 5.9E-41 1.3E-45 361.4 23.7 214 382-605 1-219 (230)
188 PRK11264 putative amino-acid A 100.0 1.4E-40 3.1E-45 363.1 27.0 223 381-613 3-239 (250)
189 PRK14256 phosphate ABC transpo 100.0 1.1E-40 2.5E-45 364.0 26.1 228 380-613 3-242 (252)
190 cd03264 ABC_drug_resistance_li 100.0 3.1E-41 6.8E-46 358.5 21.0 207 382-600 1-211 (211)
191 PRK13536 nodulation factor exp 100.0 5.3E-41 1.2E-45 377.7 24.0 217 381-608 41-262 (340)
192 PRK13641 cbiO cobalt transport 100.0 8.1E-41 1.8E-45 370.8 25.1 221 381-608 2-235 (287)
193 TIGR01288 nodI ATP-binding ABC 100.0 5.6E-41 1.2E-45 375.1 24.0 217 381-608 4-225 (303)
194 cd03247 ABCC_cytochrome_bd The 100.0 4.9E-41 1.1E-45 346.4 21.6 178 382-600 1-178 (178)
195 PRK13645 cbiO cobalt transport 100.0 8E-41 1.7E-45 371.8 24.9 223 380-608 5-241 (289)
196 PRK09493 glnQ glutamine ABC tr 100.0 1E-40 2.2E-45 361.8 25.0 217 382-608 2-226 (240)
197 PRK13652 cbiO cobalt transport 100.0 1.1E-40 2.3E-45 368.2 25.5 219 381-608 3-228 (277)
198 cd03250 ABCC_MRP_domain1 Domai 100.0 7.4E-41 1.6E-45 353.5 23.2 200 382-595 1-204 (204)
199 PRK13648 cbiO cobalt transport 100.0 1.2E-40 2.6E-45 366.7 25.7 220 381-608 7-232 (269)
200 PRK14239 phosphate transporter 100.0 1.1E-40 2.4E-45 364.5 25.1 224 381-610 5-239 (252)
201 TIGR03005 ectoine_ehuA ectoine 100.0 9.2E-41 2E-45 364.7 24.3 222 382-613 1-242 (252)
202 PRK13640 cbiO cobalt transport 100.0 1.3E-40 2.7E-45 368.3 25.5 221 380-608 4-233 (282)
203 PRK13649 cbiO cobalt transport 100.0 1E-40 2.2E-45 369.8 24.7 220 382-608 3-235 (280)
204 cd03226 ABC_cobalt_CbiO_domain 100.0 3.9E-41 8.4E-46 355.9 20.3 199 383-597 1-205 (205)
205 PRK14270 phosphate ABC transpo 100.0 1.9E-40 4.1E-45 362.0 26.2 225 380-610 3-238 (251)
206 PRK14253 phosphate ABC transpo 100.0 1.9E-40 4.1E-45 361.8 26.0 224 381-610 3-236 (249)
207 cd03268 ABC_BcrA_bacitracin_re 100.0 8E-41 1.7E-45 354.5 22.1 203 382-600 1-208 (208)
208 PRK14244 phosphate ABC transpo 100.0 1.5E-40 3.3E-45 362.7 25.0 226 382-613 6-243 (251)
209 TIGR03411 urea_trans_UrtD urea 100.0 1.9E-40 4E-45 360.4 25.5 219 381-607 2-231 (242)
210 cd03301 ABC_MalK_N The N-termi 100.0 7.8E-41 1.7E-45 356.1 22.1 207 382-600 1-213 (213)
211 PRK14271 phosphate ABC transpo 100.0 2E-40 4.2E-45 365.3 25.9 225 380-610 20-254 (276)
212 PRK10895 lipopolysaccharide AB 100.0 1.3E-40 2.9E-45 361.1 24.2 217 381-607 3-226 (241)
213 PRK14262 phosphate ABC transpo 100.0 2E-40 4.4E-45 361.7 25.4 228 381-614 3-241 (250)
214 PRK13633 cobalt transporter AT 100.0 1.7E-40 3.8E-45 367.1 25.1 221 381-608 4-234 (280)
215 TIGR03522 GldA_ABC_ATP gliding 100.0 1.1E-40 2.4E-45 372.0 23.7 216 382-608 3-222 (301)
216 PRK13638 cbiO cobalt transport 100.0 1.7E-40 3.7E-45 366.0 24.8 217 382-608 2-226 (271)
217 PRK14243 phosphate transporter 100.0 3.1E-40 6.7E-45 362.2 26.7 222 381-612 10-253 (264)
218 PRK10575 iron-hydroxamate tran 100.0 1.5E-40 3.2E-45 365.2 24.2 214 380-607 10-237 (265)
219 cd03293 ABC_NrtD_SsuB_transpor 100.0 7.6E-41 1.7E-45 357.8 21.2 209 382-602 1-218 (220)
220 PRK14272 phosphate ABC transpo 100.0 2.1E-40 4.6E-45 362.3 25.2 227 381-613 4-242 (252)
221 PRK10619 histidine/lysine/argi 100.0 2.5E-40 5.4E-45 362.2 25.6 220 380-609 4-243 (257)
222 COG1131 CcmA ABC-type multidru 100.0 1E-40 2.2E-45 368.0 22.6 214 381-608 4-227 (293)
223 PRK14275 phosphate ABC transpo 100.0 3.2E-40 7E-45 365.5 26.6 228 380-613 38-276 (286)
224 COG1137 YhbG ABC-type (unclass 100.0 1.2E-41 2.6E-46 331.4 13.0 222 380-609 3-230 (243)
225 PRK13548 hmuV hemin importer A 100.0 2.8E-40 6.1E-45 361.2 25.6 217 381-607 2-230 (258)
226 PRK11231 fecE iron-dicitrate t 100.0 1.9E-40 4.2E-45 362.6 24.0 215 382-607 3-227 (255)
227 cd03257 ABC_NikE_OppD_transpor 100.0 1.3E-40 2.9E-45 358.6 22.4 213 382-600 2-228 (228)
228 PRK11247 ssuB aliphatic sulfon 100.0 2.7E-40 5.8E-45 359.3 24.7 205 380-603 11-219 (257)
229 cd03225 ABC_cobalt_CbiO_domain 100.0 1.1E-40 2.4E-45 354.5 21.1 205 383-595 1-211 (211)
230 COG0411 LivG ABC-type branched 100.0 6.4E-41 1.4E-45 340.4 18.1 220 382-609 5-241 (250)
231 PRK14254 phosphate ABC transpo 100.0 5.1E-40 1.1E-44 363.4 27.0 221 379-609 37-271 (285)
232 PRK11124 artP arginine transpo 100.0 3E-40 6.4E-45 358.6 24.6 217 381-607 2-230 (242)
233 cd03246 ABCC_Protease_Secretio 100.0 1.7E-40 3.8E-45 340.4 21.6 172 382-596 1-173 (173)
234 cd03292 ABC_FtsE_transporter F 100.0 1.5E-40 3.4E-45 354.2 22.0 206 382-596 1-214 (214)
235 PRK11300 livG leucine/isoleuci 100.0 3.1E-40 6.8E-45 361.6 25.0 221 381-608 5-244 (255)
236 PRK13639 cbiO cobalt transport 100.0 2.8E-40 6.1E-45 364.5 24.5 218 382-608 2-227 (275)
237 PRK10636 putative ABC transpor 100.0 2.9E-39 6.3E-44 394.9 35.9 206 382-605 2-234 (638)
238 PRK15093 antimicrobial peptide 100.0 2.9E-40 6.2E-45 372.4 24.8 233 381-617 3-258 (330)
239 COG4172 ABC-type uncharacteriz 100.0 1.4E-39 2.9E-44 346.9 27.9 232 381-617 6-257 (534)
240 PRK10253 iron-enterobactin tra 100.0 4.7E-40 1E-44 361.2 25.4 217 380-607 6-233 (265)
241 PRK10247 putative ABC transpor 100.0 2.6E-40 5.7E-45 354.3 22.6 211 381-603 7-223 (225)
242 PRK14252 phosphate ABC transpo 100.0 6.9E-40 1.5E-44 360.2 26.3 225 379-613 14-255 (265)
243 PRK14241 phosphate transporter 100.0 4.6E-40 9.9E-45 360.3 24.7 222 381-608 4-243 (258)
244 TIGR02673 FtsE cell division A 100.0 2.3E-40 4.9E-45 352.9 21.6 205 382-595 2-214 (214)
245 TIGR02203 MsbA_lipidA lipid A 100.0 2.3E-37 4.9E-42 379.1 51.3 385 687-1077 5-389 (571)
246 PRK14260 phosphate ABC transpo 100.0 5.6E-40 1.2E-44 359.6 25.2 221 380-610 6-246 (259)
247 PLN03140 ABC transporter G fam 100.0 1.4E-38 3E-43 413.7 42.6 206 397-606 178-426 (1470)
248 PRK14266 phosphate ABC transpo 100.0 7.8E-40 1.7E-44 357.2 26.1 223 381-613 3-240 (250)
249 cd03290 ABCC_SUR1_N The SUR do 100.0 5.1E-40 1.1E-44 350.9 23.7 210 383-595 2-218 (218)
250 cd03269 ABC_putative_ATPase Th 100.0 2E-40 4.3E-45 352.1 20.4 205 382-600 1-210 (210)
251 PRK10584 putative ABC transpor 100.0 6E-40 1.3E-44 353.0 24.4 212 381-599 6-227 (228)
252 PRK10908 cell division protein 100.0 5E-40 1.1E-44 352.0 23.7 208 382-598 2-217 (222)
253 PRK11701 phnK phosphonate C-P 100.0 6.9E-40 1.5E-44 358.9 25.0 226 381-615 6-249 (258)
254 PRK11144 modC molybdate transp 100.0 5.8E-40 1.3E-44 372.9 25.1 212 382-610 2-221 (352)
255 TIGR01192 chvA glucan exporter 100.0 2.9E-37 6.3E-42 375.9 50.5 384 685-1077 8-392 (585)
256 PRK10790 putative multidrug tr 100.0 2.8E-37 6.1E-42 378.8 50.3 384 686-1077 13-398 (592)
257 TIGR03873 F420-0_ABC_ATP propo 100.0 5.3E-40 1.2E-44 359.4 23.4 216 382-607 2-226 (256)
258 COG0444 DppD ABC-type dipeptid 100.0 7.1E-40 1.5E-44 348.0 23.5 231 382-617 2-253 (316)
259 PRK14255 phosphate ABC transpo 100.0 1E-39 2.2E-44 356.7 25.3 225 381-611 5-240 (252)
260 PRK14265 phosphate ABC transpo 100.0 2E-39 4.3E-44 357.2 27.7 221 380-610 19-261 (274)
261 TIGR00968 3a0106s01 sulfate AB 100.0 1E-39 2.2E-44 352.6 24.8 215 382-608 1-221 (237)
262 PRK14258 phosphate ABC transpo 100.0 1.2E-39 2.7E-44 357.0 25.7 226 380-611 6-249 (261)
263 TIGR01188 drrA daunorubicin re 100.0 4E-40 8.8E-45 368.0 22.2 204 397-608 6-214 (302)
264 cd03262 ABC_HisP_GlnQ_permease 100.0 7.8E-40 1.7E-44 348.6 23.1 205 382-596 1-213 (213)
265 cd03235 ABC_Metallic_Cations A 100.0 2.9E-40 6.2E-45 351.6 19.4 202 383-600 1-213 (213)
266 PRK14246 phosphate ABC transpo 100.0 1.4E-39 3.1E-44 354.9 25.3 231 380-616 9-250 (257)
267 PRK11176 lipid transporter ATP 100.0 5.6E-37 1.2E-41 376.0 51.2 386 686-1077 15-400 (582)
268 PRK14264 phosphate ABC transpo 100.0 2.3E-39 5E-44 361.8 27.4 224 380-608 44-290 (305)
269 cd03300 ABC_PotA_N PotA is an 100.0 1.1E-39 2.4E-44 351.4 24.0 215 382-608 1-221 (232)
270 cd03298 ABC_ThiQ_thiamine_tran 100.0 1.2E-39 2.7E-44 346.2 24.0 201 382-600 1-211 (211)
271 PRK14263 phosphate ABC transpo 100.0 2.3E-39 5.1E-44 354.0 26.8 220 381-610 8-248 (261)
272 PRK13547 hmuV hemin importer A 100.0 1.1E-39 2.3E-44 357.6 24.2 216 382-607 2-244 (272)
273 PRK15112 antimicrobial peptide 100.0 1.6E-39 3.4E-44 357.3 24.7 231 381-617 4-250 (267)
274 COG1123 ATPase components of v 100.0 1.2E-39 2.6E-44 371.4 24.3 235 380-618 279-530 (539)
275 PRK10771 thiQ thiamine transpo 100.0 2.5E-39 5.3E-44 348.9 25.5 209 382-608 2-220 (232)
276 TIGR01194 cyc_pep_trnsptr cycl 100.0 4E-37 8.7E-42 372.8 47.7 382 683-1077 4-399 (555)
277 PRK09984 phosphonate/organopho 100.0 3.7E-39 8E-44 354.0 26.6 215 381-605 4-240 (262)
278 PRK10789 putative multidrug tr 100.0 5E-37 1.1E-41 373.4 48.0 360 713-1077 12-372 (569)
279 TIGR01978 sufC FeS assembly AT 100.0 1.6E-39 3.4E-44 353.7 22.9 216 382-606 1-233 (243)
280 TIGR02142 modC_ABC molybdenum 100.0 2E-39 4.3E-44 369.3 24.7 216 386-613 4-227 (354)
281 cd03299 ABC_ModC_like Archeal 100.0 2.9E-39 6.2E-44 348.7 24.7 215 382-609 1-221 (235)
282 COG4598 HisP ABC-type histidin 100.0 6.8E-40 1.5E-44 312.2 17.1 221 381-612 6-246 (256)
283 TIGR02204 MsbA_rel ABC transpo 100.0 1.4E-36 3.1E-41 372.1 51.4 388 686-1077 8-397 (576)
284 PRK11248 tauB taurine transpor 100.0 2.1E-39 4.5E-44 353.2 23.3 206 382-602 2-215 (255)
285 cd03234 ABCG_White The White s 100.0 1.4E-39 3E-44 349.4 21.6 211 382-600 4-226 (226)
286 PRK10419 nikE nickel transport 100.0 3.5E-39 7.7E-44 354.4 24.4 227 381-615 3-248 (268)
287 TIGR01277 thiQ thiamine ABC tr 100.0 4.4E-39 9.5E-44 342.2 23.5 202 382-601 1-212 (213)
288 cd03228 ABCC_MRP_Like The MRP 100.0 3.1E-39 6.8E-44 330.5 21.5 171 382-595 1-171 (171)
289 COG4619 ABC-type uncharacteriz 100.0 7E-40 1.5E-44 309.2 15.0 194 396-598 15-214 (223)
290 cd03233 ABC_PDR_domain1 The pl 100.0 3.9E-39 8.4E-44 338.8 22.0 191 381-600 3-202 (202)
291 cd03230 ABC_DR_subfamily_A Thi 100.0 3.7E-39 7.9E-44 330.7 20.8 170 382-596 1-173 (173)
292 PRK11147 ABC transporter ATPas 100.0 5.5E-38 1.2E-42 385.0 35.1 206 381-606 3-242 (635)
293 COG0488 Uup ATPase components 100.0 9E-38 1.9E-42 364.8 34.5 207 381-606 3-239 (530)
294 cd03229 ABC_Class3 This class 100.0 4.3E-39 9.2E-44 331.8 20.8 172 382-595 1-178 (178)
295 TIGR02323 CP_lyasePhnK phospho 100.0 9.6E-39 2.1E-43 349.2 24.5 225 381-615 3-246 (253)
296 COG4559 ABC-type hemin transpo 100.0 6.5E-39 1.4E-43 315.1 20.5 213 382-608 2-231 (259)
297 TIGR02982 heterocyst_DevA ABC 100.0 6.6E-39 1.4E-43 342.6 21.8 208 382-596 2-219 (220)
298 cd03297 ABC_ModC_molybdenum_tr 100.0 9.3E-39 2E-43 340.1 22.5 204 383-600 3-214 (214)
299 PRK10418 nikD nickel transport 100.0 1.5E-38 3.2E-43 347.3 24.5 217 381-611 4-234 (254)
300 cd03213 ABCG_EPDR ABCG transpo 100.0 8.4E-39 1.8E-43 334.0 21.4 183 381-600 3-194 (194)
301 PLN03073 ABC transporter F fam 100.0 5.6E-38 1.2E-42 383.7 31.6 219 380-605 176-429 (718)
302 COG4181 Predicted ABC-type tra 100.0 3.9E-39 8.4E-44 305.2 16.3 211 381-599 6-227 (228)
303 TIGR03740 galliderm_ABC gallid 100.0 1.1E-38 2.5E-43 341.7 22.1 205 382-604 1-210 (223)
304 cd03217 ABC_FeS_Assembly ABC-t 100.0 2E-38 4.4E-43 333.0 22.6 185 382-606 1-192 (200)
305 COG4172 ABC-type uncharacteriz 100.0 2.3E-38 5.1E-43 337.5 22.4 226 379-616 274-525 (534)
306 cd03232 ABC_PDR_domain2 The pl 100.0 1.3E-38 2.9E-43 332.1 20.3 182 381-600 3-192 (192)
307 cd03223 ABCD_peroxisomal_ALDP 100.0 2.1E-38 4.5E-43 322.1 20.7 164 382-595 1-164 (166)
308 cd03215 ABC_Carb_Monos_II This 100.0 1.6E-38 3.5E-43 328.7 20.1 172 381-596 4-182 (182)
309 PRK13657 cyclic beta-1,2-gluca 100.0 2.4E-35 5.2E-40 361.1 50.4 385 684-1077 7-392 (588)
310 PRK10261 glutathione transport 100.0 4E-38 8.7E-43 384.8 25.8 228 381-615 313-561 (623)
311 TIGR02770 nickel_nikD nickel i 100.0 3.5E-38 7.5E-43 339.3 22.3 210 399-614 1-222 (230)
312 CHL00131 ycf16 sulfate ABC tra 100.0 7.6E-38 1.6E-42 342.1 24.7 216 381-605 7-239 (252)
313 TIGR03608 L_ocin_972_ABC putat 100.0 1.8E-38 3.9E-43 336.2 19.2 198 384-591 1-206 (206)
314 PRK09580 sufC cysteine desulfu 100.0 6.6E-38 1.4E-42 341.9 23.2 215 382-605 2-233 (248)
315 PRK15056 manganese/iron transp 100.0 6.7E-38 1.5E-42 345.3 23.3 214 381-607 6-230 (272)
316 PRK03695 vitamin B12-transport 100.0 1.3E-37 2.7E-42 338.2 23.9 210 383-607 2-222 (248)
317 TIGR01842 type_I_sec_PrtD type 100.0 6.4E-35 1.4E-39 353.7 50.0 372 693-1077 3-375 (544)
318 cd03214 ABC_Iron-Siderophores_ 100.0 5.2E-38 1.1E-42 324.3 19.6 177 383-600 1-180 (180)
319 cd03267 ABC_NatA_like Similar 100.0 5.2E-38 1.1E-42 338.9 20.3 196 397-600 34-236 (236)
320 COG4525 TauB ABC-type taurine 100.0 6.1E-38 1.3E-42 303.5 17.8 210 382-602 4-219 (259)
321 COG4608 AppF ABC-type oligopep 100.0 5.5E-38 1.2E-42 326.8 18.8 197 381-617 4-209 (268)
322 cd03216 ABC_Carb_Monos_I This 100.0 1.6E-37 3.4E-42 314.6 21.5 159 382-598 1-162 (163)
323 PRK15439 autoinducer 2 ABC tra 100.0 2E-37 4.4E-42 371.5 26.1 215 381-607 11-229 (510)
324 PRK09544 znuC high-affinity zi 100.0 2.8E-37 6E-42 335.1 24.4 208 381-617 4-217 (251)
325 COG4604 CeuD ABC-type enteroch 100.0 3.2E-38 7E-43 306.2 15.0 216 382-608 2-226 (252)
326 cd03231 ABC_CcmA_heme_exporter 100.0 2.8E-37 6.1E-42 324.9 22.4 195 382-591 1-198 (201)
327 TIGR01184 ntrCD nitrate transp 100.0 2.1E-37 4.5E-42 332.8 21.8 195 400-606 1-203 (230)
328 COG1129 MglA ABC-type sugar tr 100.0 3.6E-37 7.8E-42 349.0 22.5 212 381-602 8-229 (500)
329 PRK13538 cytochrome c biogenes 100.0 4.4E-37 9.5E-42 324.4 20.9 195 382-591 2-202 (204)
330 COG4161 ArtP ABC-type arginine 100.0 2.5E-37 5.4E-42 289.3 16.4 216 381-607 2-230 (242)
331 PRK13540 cytochrome c biogenes 100.0 4.3E-37 9.4E-42 323.3 20.4 194 382-590 2-198 (200)
332 PRK15134 microcin C ABC transp 100.0 4.5E-37 9.7E-42 370.9 23.2 225 381-613 275-521 (529)
333 TIGR00955 3a01204 The Eye Pigm 100.0 1.9E-36 4.1E-41 369.7 28.7 205 396-606 37-255 (617)
334 PRK13546 teichoic acids export 100.0 1.2E-36 2.7E-41 331.6 23.5 208 381-608 4-233 (264)
335 PRK13543 cytochrome c biogenes 100.0 1.1E-36 2.4E-41 323.7 21.9 197 381-593 11-212 (214)
336 COG4148 ModC ABC-type molybdat 100.0 3.3E-37 7.1E-42 314.6 16.7 196 402-608 16-219 (352)
337 PRK10522 multidrug transporter 100.0 4.3E-34 9.4E-39 346.4 46.5 371 689-1077 6-380 (547)
338 TIGR01257 rim_protein retinal- 100.0 2.9E-35 6.3E-40 382.7 38.5 220 380-608 1936-2160(2272)
339 TIGR02324 CP_lyasePhnL phospho 100.0 1.7E-36 3.7E-41 325.3 20.7 204 382-591 2-222 (224)
340 PRK13545 tagH teichoic acids e 100.0 4.6E-36 9.9E-41 343.7 24.9 208 381-608 21-233 (549)
341 TIGR03269 met_CoM_red_A2 methy 100.0 2.8E-36 6E-41 363.6 23.6 224 381-607 279-517 (520)
342 PRK13539 cytochrome c biogenes 100.0 3.4E-36 7.5E-41 318.1 21.5 194 382-593 3-200 (207)
343 PRK13549 xylose transporter AT 100.0 2.3E-36 5E-41 362.8 22.7 218 381-605 259-492 (506)
344 TIGR01189 ccmA heme ABC export 100.0 2.3E-36 5.1E-41 317.4 19.8 193 382-590 1-197 (198)
345 PLN03211 ABC transporter G-25; 100.0 2.3E-36 4.9E-41 368.1 22.4 204 397-607 81-296 (659)
346 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 100.0 2.9E-36 6.3E-41 322.3 19.9 197 382-600 23-224 (224)
347 PRK13409 putative ATPase RIL; 100.0 2.6E-36 5.7E-41 363.1 22.0 192 386-594 78-287 (590)
348 PRK10535 macrolide transporter 100.0 6.7E-36 1.5E-40 366.5 25.5 219 381-606 4-231 (648)
349 COG3845 ABC-type uncharacteriz 100.0 6.1E-36 1.3E-40 330.7 21.3 211 381-601 4-223 (501)
350 TIGR01166 cbiO cobalt transpor 100.0 2.9E-36 6.2E-41 314.7 17.8 178 397-581 5-189 (190)
351 TIGR03771 anch_rpt_ABC anchore 100.0 5.2E-36 1.1E-40 320.4 20.1 189 405-607 1-201 (223)
352 TIGR00954 3a01203 Peroxysomal 100.0 2.5E-33 5.5E-38 343.9 44.2 389 684-1077 79-509 (659)
353 TIGR02633 xylG D-xylose ABC tr 100.0 8.4E-36 1.8E-40 358.0 21.7 217 381-604 257-489 (500)
354 PRK09700 D-allose transporter 100.0 1.9E-35 4.1E-40 355.5 23.5 212 381-604 265-495 (510)
355 TIGR01187 potA spermidine/putr 100.0 1.6E-35 3.4E-40 333.2 20.8 190 415-613 1-196 (325)
356 COG4152 ABC-type uncharacteriz 100.0 5E-36 1.1E-40 300.8 14.8 213 381-607 2-219 (300)
357 COG4988 CydD ABC-type transpor 100.0 4.4E-32 9.5E-37 307.8 48.3 370 702-1077 6-378 (559)
358 PRK13541 cytochrome c biogenes 100.0 1.8E-35 3.9E-40 309.8 19.3 189 382-589 2-193 (195)
359 COG1101 PhnK ABC-type uncharac 100.0 1.6E-35 3.4E-40 291.9 17.3 206 396-601 18-232 (263)
360 KOG0060 Long-chain acyl-CoA tr 100.0 1.5E-32 3.4E-37 306.2 42.7 420 163-594 186-642 (659)
361 PRK10762 D-ribose transporter 100.0 2.8E-35 6E-40 353.0 21.7 210 381-605 257-482 (501)
362 PRK11288 araG L-arabinose tran 100.0 1E-34 2.2E-39 348.0 22.0 212 381-606 257-484 (501)
363 cd03221 ABCF_EF-3 ABCF_EF-3 E 100.0 1.2E-34 2.5E-39 286.8 18.5 143 382-595 1-144 (144)
364 TIGR00956 3a01205 Pleiotropic 100.0 8.2E-35 1.8E-39 380.8 21.4 217 381-604 759-990 (1394)
365 PRK15439 autoinducer 2 ABC tra 100.0 1.6E-34 3.4E-39 346.6 21.1 211 381-606 268-491 (510)
366 PRK15177 Vi polysaccharide exp 100.0 2.1E-34 4.7E-39 305.0 19.2 186 399-607 2-192 (213)
367 cd03237 ABC_RNaseL_inhibitor_d 100.0 2.4E-34 5.3E-39 310.5 20.0 193 389-606 1-206 (246)
368 COG4987 CydC ABC-type transpor 100.0 4.5E-31 9.8E-36 293.9 45.7 326 746-1077 66-395 (573)
369 PRK15064 ABC transporter ATP-b 100.0 4.5E-34 9.7E-39 344.9 23.7 202 380-608 318-526 (530)
370 cd03236 ABC_RNaseL_inhibitor_d 100.0 2E-34 4.4E-39 312.2 17.7 202 385-600 4-220 (255)
371 COG1119 ModF ABC-type molybden 100.0 9.9E-34 2.2E-38 287.7 19.6 211 380-601 30-256 (257)
372 PRK10982 galactose/methyl gala 100.0 7.9E-34 1.7E-38 339.9 22.0 211 381-603 250-476 (491)
373 COG4167 SapF ABC-type antimicr 100.0 8.9E-34 1.9E-38 271.1 16.7 226 382-619 5-252 (267)
374 KOG0056 Heavy metal exporter H 100.0 5.3E-33 1.1E-37 301.2 24.4 321 752-1077 273-595 (790)
375 PRK10938 putative molybdenum t 100.0 2.2E-33 4.8E-38 336.2 21.4 210 380-600 259-485 (490)
376 COG4674 Uncharacterized ABC-ty 100.0 1.4E-33 3E-38 273.5 15.7 221 381-609 5-237 (249)
377 cd00267 ABC_ATPase ABC (ATP-bi 100.0 5.8E-33 1.3E-37 280.3 19.7 155 383-595 1-157 (157)
378 cd03222 ABC_RNaseL_inhibitor T 100.0 3E-33 6.5E-38 284.1 17.3 145 385-597 4-151 (177)
379 KOG0057 Mitochondrial Fe/S clu 100.0 1.2E-30 2.6E-35 290.6 39.1 365 707-1077 41-408 (591)
380 PRK11819 putative ABC transpor 100.0 1.4E-32 3.1E-37 332.8 23.1 204 380-608 323-534 (556)
381 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 1.9E-32 4.2E-37 331.7 23.4 202 380-606 321-530 (552)
382 COG4136 ABC-type uncharacteriz 100.0 9.2E-33 2E-37 255.9 15.4 195 381-591 2-207 (213)
383 PRK10636 putative ABC transpor 100.0 1.4E-32 3.1E-37 336.1 22.1 200 380-606 311-516 (638)
384 COG0396 sufC Cysteine desulfur 100.0 5.7E-32 1.2E-36 271.2 20.5 215 381-607 3-233 (251)
385 PLN03073 ABC transporter F fam 100.0 3.2E-32 6.9E-37 333.2 22.9 199 380-605 507-712 (718)
386 PRK11147 ABC transporter ATPas 100.0 2.5E-32 5.3E-37 335.1 21.9 203 380-605 318-526 (635)
387 cd03238 ABC_UvrA The excision 100.0 3.1E-32 6.8E-37 276.4 18.5 155 397-595 8-165 (176)
388 PRK13409 putative ATPase RIL; 100.0 2.6E-32 5.7E-37 328.5 21.3 194 380-601 339-536 (590)
389 PLN03140 ABC transporter G fam 100.0 4.6E-32 9.9E-37 353.0 24.5 219 380-604 866-1107(1470)
390 COG1134 TagH ABC-type polysacc 100.0 3.2E-31 6.8E-36 270.3 19.8 188 396-607 39-236 (249)
391 COG4107 PhnK ABC-type phosphon 100.0 2.5E-31 5.5E-36 252.2 16.6 227 381-618 6-252 (258)
392 COG4586 ABC-type uncharacteriz 100.0 5.1E-31 1.1E-35 269.2 14.0 203 398-608 38-247 (325)
393 KOG0061 Transporter, ABC super 100.0 1.5E-30 3.2E-35 313.7 18.3 222 380-607 24-260 (613)
394 COG5265 ATM1 ABC-type transpor 100.0 8.8E-29 1.9E-33 266.8 26.7 316 758-1077 2-320 (497)
395 KOG0927 Predicted transporter 100.0 7.9E-29 1.7E-33 274.8 22.2 210 378-607 72-309 (614)
396 PF00005 ABC_tran: ABC transpo 100.0 5.9E-30 1.3E-34 252.5 11.6 136 400-549 1-137 (137)
397 KOG0064 Peroxisomal long-chain 100.0 1.8E-25 4E-30 245.7 47.6 439 129-589 181-679 (728)
398 COG0488 Uup ATPase components 100.0 4.8E-28 1E-32 283.3 24.0 203 379-607 319-525 (530)
399 COG4133 CcmA ABC-type transpor 100.0 5.5E-29 1.2E-33 241.8 11.8 188 382-584 3-195 (209)
400 COG4778 PhnL ABC-type phosphon 100.0 4.4E-29 9.6E-34 236.5 10.3 204 381-593 4-227 (235)
401 cd03270 ABC_UvrA_I The excisio 100.0 3.4E-28 7.4E-33 259.9 17.0 191 397-600 8-226 (226)
402 cd03271 ABC_UvrA_II The excisi 99.9 1.5E-27 3.3E-32 256.5 16.9 193 399-602 10-261 (261)
403 COG4618 ArpD ABC-type protease 99.9 1.1E-24 2.3E-29 240.8 37.7 364 703-1077 30-393 (580)
404 cd03278 ABC_SMC_barmotin Barmo 99.9 1.3E-27 2.8E-32 249.2 13.3 164 401-593 14-190 (197)
405 KOG0059 Lipid exporter ABCA1 a 99.9 3E-27 6.4E-32 297.7 17.8 220 380-608 563-788 (885)
406 COG4615 PvdE ABC-type sideroph 99.9 8.5E-24 1.8E-28 225.6 37.2 328 741-1077 51-380 (546)
407 COG4138 BtuD ABC-type cobalami 99.9 6.7E-27 1.4E-31 222.6 7.3 208 382-608 4-222 (248)
408 cd03279 ABC_sbcCD SbcCD and ot 99.9 2.5E-26 5.3E-31 243.8 12.4 192 381-596 5-211 (213)
409 cd03272 ABC_SMC3_euk Eukaryoti 99.9 8.6E-26 1.9E-30 245.6 13.4 190 381-592 3-234 (243)
410 COG1129 MglA ABC-type sugar tr 99.9 7.9E-25 1.7E-29 248.8 19.2 213 381-604 263-487 (500)
411 KOG0065 Pleiotropic drug resis 99.9 1.4E-23 3.1E-28 255.8 31.0 208 397-607 128-351 (1391)
412 cd03240 ABC_Rad50 The catalyti 99.9 5.8E-25 1.2E-29 230.8 11.6 164 403-594 16-198 (204)
413 PF00664 ABC_membrane: ABC tra 99.9 3E-21 6.5E-26 212.6 39.4 271 60-334 3-274 (275)
414 cd03274 ABC_SMC4_euk Eukaryoti 99.9 3.5E-25 7.7E-30 233.4 6.4 185 381-593 5-204 (212)
415 cd03273 ABC_SMC2_euk Eukaryoti 99.9 1.3E-24 2.9E-29 236.8 9.7 177 410-592 25-242 (251)
416 KOG0065 Pleiotropic drug resis 99.9 1.4E-24 3E-29 264.6 10.5 199 396-604 803-1018(1391)
417 KOG0927 Predicted transporter 99.9 1.8E-24 3.9E-29 240.3 10.4 194 380-598 388-586 (614)
418 PRK00635 excinuclease ABC subu 99.9 4E-23 8.7E-28 265.8 20.4 212 381-608 600-907 (1809)
419 COG3845 ABC-type uncharacteriz 99.9 1.2E-22 2.6E-27 225.6 20.8 215 379-604 255-489 (501)
420 PRK00349 uvrA excinuclease ABC 99.9 5.2E-23 1.1E-27 255.3 19.1 98 513-610 823-930 (943)
421 PF00664 ABC_membrane: ABC tra 99.9 1.5E-20 3.2E-25 207.1 36.0 271 700-972 3-274 (275)
422 TIGR00630 uvra excinuclease AB 99.9 9E-22 2E-26 243.9 20.8 93 513-605 821-923 (924)
423 cd03275 ABC_SMC1_euk Eukaryoti 99.9 1.3E-22 2.9E-27 220.2 11.8 183 411-593 23-233 (247)
424 COG4170 SapD ABC-type antimicr 99.9 4.7E-22 1E-26 194.8 13.2 233 383-617 5-258 (330)
425 KOG0062 ATPase component of AB 99.9 1.9E-21 4E-26 215.3 17.4 195 379-598 360-559 (582)
426 KOG0066 eIF2-interacting prote 99.9 1E-21 2.2E-26 210.9 14.6 191 380-596 585-779 (807)
427 cd03276 ABC_SMC6_euk Eukaryoti 99.9 3.5E-21 7.6E-26 201.0 13.4 172 400-595 12-192 (198)
428 COG1245 Predicted ATPase, RNas 99.9 5.2E-21 1.1E-25 208.2 14.4 182 386-593 340-531 (591)
429 KOG0062 ATPase component of AB 99.8 6.4E-22 1.4E-26 219.0 7.2 202 379-607 78-285 (582)
430 KOG2355 Predicted ABC-type tra 99.8 1.8E-19 3.9E-24 176.6 15.0 211 379-605 11-235 (291)
431 cd03239 ABC_SMC_head The struc 99.8 1E-19 2.2E-24 186.3 13.8 84 504-593 84-172 (178)
432 cd03277 ABC_SMC5_euk Eukaryoti 99.8 5.2E-19 1.1E-23 186.6 11.4 180 401-595 15-211 (213)
433 COG1245 Predicted ATPase, RNas 99.8 8.5E-19 1.8E-23 191.1 12.9 191 386-593 79-288 (591)
434 cd03280 ABC_MutS2 MutS2 homolo 99.8 6.5E-19 1.4E-23 185.1 11.3 144 400-599 17-171 (200)
435 cd03241 ABC_RecN RecN ATPase i 99.8 3.3E-18 7.1E-23 188.8 15.2 76 520-595 170-249 (276)
436 COG4178 ABC-type uncharacteriz 99.8 3.4E-15 7.3E-20 173.9 40.2 335 741-1077 89-450 (604)
437 COG2401 ABC-type ATPase fused 99.7 1.1E-17 2.5E-22 179.9 14.7 199 377-597 353-588 (593)
438 PRK00635 excinuclease ABC subu 99.7 2.3E-17 5E-22 213.2 18.5 211 399-610 1505-1799(1809)
439 COG0178 UvrA Excinuclease ATPa 99.7 2.4E-17 5.2E-22 191.8 15.8 97 513-609 815-921 (935)
440 cd01128 rho_factor Transcripti 99.7 1.7E-17 3.6E-22 177.7 12.8 199 405-621 11-230 (249)
441 cd03227 ABC_Class2 ABC-type Cl 99.7 2.5E-17 5.4E-22 166.8 11.2 136 403-593 14-155 (162)
442 cd03242 ABC_RecF RecF is a rec 99.7 5.3E-16 1.1E-20 170.7 15.9 190 400-596 12-269 (270)
443 cd03285 ABC_MSH2_euk MutS2 hom 99.7 2.2E-16 4.7E-21 167.6 11.3 152 397-601 17-175 (222)
444 PRK00349 uvrA excinuclease ABC 99.6 1.3E-15 2.7E-20 189.9 13.9 95 514-608 483-586 (943)
445 TIGR00630 uvra excinuclease AB 99.6 1.4E-15 3E-20 189.2 14.2 95 514-608 481-584 (924)
446 cd03243 ABC_MutS_homologs The 99.6 6.5E-16 1.4E-20 162.7 8.3 153 402-604 21-176 (202)
447 cd03283 ABC_MutS-like MutS-lik 99.6 1E-15 2.2E-20 159.8 8.7 136 398-584 15-153 (199)
448 KOG0066 eIF2-interacting prote 99.6 1.1E-15 2.4E-20 164.9 7.7 191 381-597 264-488 (807)
449 cd00820 PEPCK_HprK Phosphoenol 99.6 1.5E-15 3.2E-20 138.7 5.7 75 398-480 3-77 (107)
450 TIGR02858 spore_III_AA stage I 99.6 1E-14 2.2E-19 158.0 12.6 142 411-606 112-268 (270)
451 KOG0063 RNAse L inhibitor, ABC 99.5 5.3E-14 1.1E-18 152.5 13.1 181 389-593 343-532 (592)
452 cd03282 ABC_MSH4_euk MutS4 hom 99.5 5.5E-14 1.2E-18 146.9 11.3 138 397-584 16-156 (204)
453 cd03284 ABC_MutS1 MutS1 homolo 99.5 5.3E-14 1.1E-18 148.9 10.0 153 398-605 19-179 (216)
454 KOG0060 Long-chain acyl-CoA tr 99.5 7E-12 1.5E-16 141.9 27.3 64 1013-1077 429-492 (659)
455 PRK00064 recF recombination pr 99.5 1.2E-12 2.5E-17 149.7 17.7 76 519-596 272-359 (361)
456 TIGR00606 rad50 rad50. This fa 99.5 2.5E-13 5.5E-18 179.8 13.6 119 469-592 1153-1289(1311)
457 COG3638 ABC-type phosphate/pho 99.4 1.7E-13 3.8E-18 139.2 6.2 59 1017-1077 3-61 (258)
458 PF02463 SMC_N: RecF/RecN/SMC 99.4 8.4E-13 1.8E-17 141.3 8.3 72 520-591 136-211 (220)
459 COG1116 TauB ABC-type nitrate/ 99.4 7.7E-13 1.7E-17 137.2 6.3 58 1017-1077 3-60 (248)
460 cd03289 ABCC_CFTR2 The CFTR su 99.3 1.2E-12 2.5E-17 143.8 6.8 60 1016-1077 1-60 (275)
461 PRK07721 fliI flagellum-specif 99.3 3E-11 6.4E-16 139.5 17.3 175 397-604 146-340 (438)
462 PRK14257 phosphate ABC transpo 99.3 2.4E-12 5.3E-17 145.0 6.7 65 1012-1077 75-144 (329)
463 cd03281 ABC_MSH5_euk MutS5 hom 99.3 2.5E-11 5.4E-16 128.3 13.8 134 399-585 18-160 (213)
464 PHA02562 46 endonuclease subun 99.3 4.1E-12 9E-17 155.8 8.7 91 505-596 447-555 (562)
465 COG1124 DppF ABC-type dipeptid 99.3 4.7E-12 1E-16 130.1 6.4 61 1017-1077 3-64 (252)
466 smart00534 MUTSac ATPase domai 99.3 4.9E-12 1.1E-16 131.1 6.7 80 516-596 57-139 (185)
467 cd03216 ABC_Carb_Monos_I This 99.3 4.2E-12 9E-17 128.8 5.7 57 1018-1077 1-57 (163)
468 cd03369 ABCC_NFT1 Domain 2 of 99.3 6.9E-12 1.5E-16 132.8 7.5 65 1012-1077 1-65 (207)
469 KOG0063 RNAse L inhibitor, ABC 99.3 7.2E-12 1.6E-16 136.2 7.5 172 408-593 98-288 (592)
470 COG1135 AbcC ABC-type metal io 99.3 5.6E-12 1.2E-16 133.3 6.4 60 1018-1077 2-63 (339)
471 COG1121 ZnuC ABC-type Mn/Zn tr 99.3 5.1E-12 1.1E-16 133.1 6.1 58 1017-1077 4-61 (254)
472 cd03223 ABCD_peroxisomal_ALDP 99.3 6.6E-12 1.4E-16 127.7 6.4 58 1018-1077 1-58 (166)
473 PRK13646 cbiO cobalt transport 99.2 6.8E-12 1.5E-16 139.5 6.8 61 1017-1077 2-64 (286)
474 COG4181 Predicted ABC-type tra 99.2 4.9E-12 1.1E-16 121.5 4.4 61 1017-1077 6-67 (228)
475 COG1136 SalX ABC-type antimicr 99.2 8.3E-12 1.8E-16 129.7 6.4 60 1018-1077 2-62 (226)
476 cd03248 ABCC_TAP TAP, the Tran 99.2 1E-11 2.2E-16 133.5 7.5 65 1013-1077 7-71 (226)
477 cd03233 ABC_PDR_domain1 The pl 99.2 6.8E-12 1.5E-16 132.1 5.9 61 1017-1077 3-67 (202)
478 PRK13631 cbiO cobalt transport 99.2 8.7E-12 1.9E-16 140.2 6.9 61 1017-1077 21-83 (320)
479 PRK13650 cbiO cobalt transport 99.2 1E-11 2.2E-16 137.6 7.0 61 1017-1077 4-64 (279)
480 TIGR00960 3a0501s02 Type II (G 99.2 8.8E-12 1.9E-16 133.0 6.3 59 1018-1077 2-60 (216)
481 cd03266 ABC_NatA_sodium_export 99.2 1.1E-11 2.4E-16 132.5 6.9 60 1018-1077 2-62 (218)
482 cd03244 ABCC_MRP_domain2 Domai 99.2 1.2E-11 2.6E-16 132.5 7.1 61 1016-1077 1-61 (221)
483 PRK13637 cbiO cobalt transport 99.2 1.2E-11 2.7E-16 137.4 6.9 60 1018-1077 3-64 (287)
484 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.2 1E-11 2.2E-16 123.0 5.5 57 1018-1077 1-57 (144)
485 cd03257 ABC_NikE_OppD_transpor 99.2 1.3E-11 2.8E-16 133.0 6.8 60 1018-1077 2-62 (228)
486 PRK11629 lolD lipoprotein tran 99.2 1.2E-11 2.7E-16 133.5 6.4 61 1017-1077 5-66 (233)
487 PRK13643 cbiO cobalt transport 99.2 1.3E-11 2.9E-16 137.2 6.8 60 1018-1077 2-63 (288)
488 TIGR01069 mutS2 MutS2 family p 99.2 1.3E-10 2.8E-15 144.0 16.0 131 403-582 314-448 (771)
489 PRK13645 cbiO cobalt transport 99.2 1.6E-11 3.5E-16 136.9 7.1 63 1015-1077 4-68 (289)
490 cd03250 ABCC_MRP_domain1 Domai 99.2 1.5E-11 3.3E-16 129.9 6.5 60 1018-1077 1-62 (204)
491 TIGR02314 ABC_MetN D-methionin 99.2 1.4E-11 3.1E-16 139.1 6.4 60 1018-1077 2-62 (343)
492 PRK13642 cbiO cobalt transport 99.2 1.7E-11 3.7E-16 135.7 6.8 61 1017-1077 4-64 (277)
493 COG1122 CbiO ABC-type cobalt t 99.2 1.8E-11 4E-16 129.8 6.7 59 1017-1077 3-61 (235)
494 COG1127 Ttg2A ABC-type transpo 99.2 1.6E-11 3.4E-16 125.5 5.9 59 1016-1077 7-65 (263)
495 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.2 1.3E-11 2.8E-16 132.0 5.6 60 1018-1077 1-61 (218)
496 cd03288 ABCC_SUR2 The SUR doma 99.2 2E-11 4.4E-16 133.7 7.0 63 1014-1077 16-78 (257)
497 TIGR02211 LolD_lipo_ex lipopro 99.2 1.9E-11 4.2E-16 130.9 6.6 60 1018-1077 2-62 (221)
498 cd03246 ABCC_Protease_Secretio 99.2 2.2E-11 4.7E-16 125.0 6.6 59 1018-1077 1-59 (173)
499 PRK13651 cobalt transporter AT 99.2 2.1E-11 4.5E-16 136.3 6.9 61 1017-1077 2-64 (305)
500 TIGR00634 recN DNA repair prot 99.2 3.7E-11 8E-16 145.8 9.4 76 520-595 440-519 (563)
No 1
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.2e-168 Score=1515.75 Aligned_cols=1029 Identities=51% Similarity=0.835 Sum_probs=936.6
Q ss_pred hhhHHHHHHhhchhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccCCchhhhhHHHHHHHHHHHHHHHHHHHHH
Q 001438 40 SVSLFKLFAFADFYDYILMSLGSIGACVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSSW 119 (1077)
Q Consensus 40 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (1077)
..++.+++++..++++.++.+|.+++++.|+.+|++.+++|++++.+..... . ...+.+..+++.+++++++.++..+
T Consensus 12 ~~~~~~lf~~a~~~D~~Lm~~G~i~a~~~G~~~P~~~ii~g~~~~~~~~~~~-~-~~~~~~~~~~l~~~~lg~~~~~~~~ 89 (1228)
T KOG0055|consen 12 TVSFFKLFRFADRFDYLLMILGSIGAIAHGLGLPLMSIIFGKLTDVLGDNTN-K-IASSEVSKVALYFVYLGVGVFISGF 89 (1228)
T ss_pred ccchHHheeccchhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHhccc-h-hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6678999999999999999999999999999999999999999998764321 1 2224567788999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccCCChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 120 IEVSCWMYTGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFA 199 (1077)
Q Consensus 120 ~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~i~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (1077)
++..||.+.++|...++|..++++++||++.|||.+ .+|++.+++++|++.++++++++++.+++.+.+++.+++++|+
T Consensus 90 ~q~~c~~~~geRq~~riR~~yl~~iLrQdi~~fD~~-~~g~~~~~l~~d~~~I~d~~geKvg~~i~~~~~fi~g~ii~F~ 168 (1228)
T KOG0055|consen 90 IQVSCWMRTGERQTARIRSKYLKAILRQDIGWFDTN-STGELVTRLSDDIELIQDAIGEKVGNFIQLLATFIAGFVIGFY 168 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCccceeecc-cccceEEEecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999995 7799999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Q 001438 200 RVWQISLVTLSIVPLIALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGR 279 (1077)
Q Consensus 200 ~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~ 279 (1077)
+.|+|+++++.+.|++++.+..+.+.+.+...+.++.++++..+++|+++++|||.+|+.|+.+.++|.+..+...+...
T Consensus 169 ~~W~Ltlv~l~~~Pli~~~g~~~a~~~~~~t~ke~~~ya~Ag~iaEe~i~~iRTV~af~gq~~e~~ry~~~L~~~~k~gi 248 (1228)
T KOG0055|consen 169 YGWKLTLVMLSFIPLIAIAGGLLARFLSKLTEKEQEAYAKAGSIAEEVISSIRTVYAFNGEKKEIERYSKALENALKFGI 248 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh
Q 001438 280 KAGLAKGLGLGSMHCVLFLSWSLLVWYVSVVVHKHISNGGESFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEMI 359 (1077)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l 359 (1077)
+.+.+.++..++..++.+.++++.+|||+.++..+..++|++++++.+++.+...+++..|.+..+..+++|+.+|++.+
T Consensus 249 ~~g~~~G~~~G~~~~~~~~~~a~~~WyG~~li~~~~~~~g~v~~v~~~vl~g~~sLgqa~p~l~~f~~a~~aa~~I~~~i 328 (1228)
T KOG0055|consen 249 KKGLFKGLGLGFTFFLLFASYALAFWYGSTLILNGGYNGGDVITVFFSVLIGGMSLGQASPHLSAFAKARAAAYRIFETI 328 (1228)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeehhhhhhhhhccccchHHHhccccchHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCcccccccccCCCCCCCcccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCcc
Q 001438 360 ERDTMSKASSKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSG 439 (1077)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G 439 (1077)
++.|.+++....+......+|.|+|+||+|+||++|+.++|+|+||+|++||++||||||||||||++++|.|+|+|++|
T Consensus 329 ~~~~~i~~~~~~~~~~~~~~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G 408 (1228)
T KOG0055|consen 329 DRKPSIDPYSKGGRVLSSIKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSG 408 (1228)
T ss_pred cCCCCCCcccccCCcccccccceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCc
Confidence 99887765443333445567999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCeeCCCCCHHHHhhheeEEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCC
Q 001438 440 EILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGI 519 (1077)
Q Consensus 440 ~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~ 519 (1077)
+|++||.|+++++.+|+|++||.|.|+|.||++||+|||.||+|+++.+++.+||+++++++|+..+|+|++|.+||+|.
T Consensus 409 ~V~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~ 488 (1228)
T KOG0055|consen 409 EVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGV 488 (1228)
T ss_pred eEEEcCccchhcchHHHHhhcCeeeechhhhcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhhcCEEEEEECCEEEEe
Q 001438 520 QLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKT 599 (1077)
Q Consensus 520 ~LSgGqkqri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~~d~i~~l~~G~i~~~ 599 (1077)
+|||||||||||||||++||+||||||||||||+++|+.++++|++..+|+|+|+|||||+++++||+|+||++|+|+|.
T Consensus 489 qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~grTTivVaHRLStIrnaD~I~v~~~G~IvE~ 568 (1228)
T KOG0055|consen 489 QLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKASKGRTTIVVAHRLSTIRNADKIAVMEEGKIVEQ 568 (1228)
T ss_pred CCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhcCCeEEEEeeehhhhhccCEEEEEECCEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cChhHHhcCCCchHHHHHHHHHHhhhcCCCCCC--CCCCCCccccccccccCCCCcccccccccchhhcccCCCCCCC--
Q 001438 600 GSHEELISNPNSAYAALVQLQEAASQQSNSSQC--PNMGRPLSIKFSRELSGTRTSFGASFRSEKESVLSHGAADATE-- 675 (1077)
Q Consensus 600 g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 675 (1077)
|+|+||++.+ |.|.++++.|+.....+..+.. ...........+. +.....+.. ....... ...+.++.++
T Consensus 569 G~h~ELi~~~-G~Y~~lv~~Q~~~~~~~~~~~~~~~~~~~~~s~~~s~--~~~~~~~~~-~~~~~~~-~~~~~e~~~~~~ 643 (1228)
T KOG0055|consen 569 GTHDELIALG-GIYSSLVRLQELEKAAEDEEEEESLKEERSRSLKSSS--SSPSLSRGS-NRSNLLS-VKPEGEDPEEPV 643 (1228)
T ss_pred cCHHHHHhcc-chHHHHHHHHhhhhhhhccccccchhhhhhhcccccc--ccccccCCc-ccccccc-cccccccccccc
Confidence 9999999985 9999999998765533211000 0000000000000 000000000 0000000 0000000000
Q ss_pred ccccccchHHHHHhhcccchHHHHHHHHHHHHHhhHHhHHHHHHHHHHHhhcc-CchhhHHHHHHHHHHHHHHHHHHHHH
Q 001438 676 PATAKHVSAIKLYSMVRPDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYYM-DWDTTQREVKKITILFCCAAVITVIV 754 (1077)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~ 754 (1077)
..+....+.++++++.+|+|+|+++|.+++++.|+.+|++++.+++++..+.. +++........|.++|++++++.+++
T Consensus 644 ~~~~~~~s~~~i~k~~~pe~~~l~lG~i~a~i~G~~~P~fa~~~s~~~~~f~~~~~~~~~~~~~~~al~f~~l~~~~~i~ 723 (1228)
T KOG0055|consen 644 SEEDEKVSFWRIFKLNKPEWPYLLLGSLGAAIRGATYPLFAYVFSQVLEAFYPPDDDELKREVRAWALIFLGLGIVSGIT 723 (1228)
T ss_pred ccccccccHHHHHHhccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01124567899999999999999999999999999999999999999998875 44434444445999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccccCCchhHHHHHhhcHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 001438 755 HAIEHLSFGIMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQNFGLVTASFVI 834 (1077)
Q Consensus 755 ~~~~~~~~~~~~~~~~~~Lr~~l~~~llr~p~~FFD~~~~~~G~IlnR~s~D~~~i~~~l~~~l~~~~~~~~~~~~~i~i 834 (1077)
.+++.|+|+.+|++++.|+|.++|++++|+|++|||+++|. |+|.+|+++|...++..+++.+..+++++..++.++++
T Consensus 724 ~~~q~~~f~~~ge~Lt~R~R~~~F~~ll~qd~~wFD~~~ns-g~l~~RLa~Da~~vr~~v~~rl~~vv~~~~~~~~~iii 802 (1228)
T KOG0055|consen 724 NFLQHYFFGIAGEKLTKRLRSMMFRALLRQEVGWFDDPENS-GALSSRLATDASNVRAAVGDRLSLVVQNIAAVIIGIII 802 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCccc-hHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHcchHHHHHhcchHHHHHHHHHHhhhhhH
Q 001438 835 AFILNWRITLVVVATYPLIISGHISEKLFFQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSK 914 (1077)
Q Consensus 835 ~~~~~w~l~l~~l~~~Pl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Etl~Gi~tIrAf~~e~~~~~~f~~~~~~~~~ 914 (1077)
+|+++|+++++++++.|++++..+.+.+++.....+.++++.+++.++.|++++||||++|++|++|.+.|.+.++...+
T Consensus 803 af~~~W~lalv~la~~Pll~~~~~~~~~~~~~~~~~~~~~~~ea~~iA~eai~NIrTV~al~~e~~~~~~y~~~l~~p~~ 882 (1228)
T KOG0055|consen 803 AFIYGWRLALVVLATFPLLILSGYLQKKFLKGFSKDDKKAYEEASKIAIEAVSNIRTVAALCAEEKFMELYKEELEKPRK 882 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 001438 915 RSFIRGQIAGIFYGISQFFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLALVPDLLKGNQMAASVF 994 (1077)
Q Consensus 915 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~ 994 (1077)
...+++.+.|+.+++++.+.+..+++.+|||++++..+.+++.+++.+++++.+++..+++..++.|++.++..|+.++|
T Consensus 883 ~~~~~~~i~gl~f~~sqs~~~~~~A~~f~~G~~Li~~g~~~~~~~~~vf~~l~~ta~~~~~~~s~~Pd~~ka~~Aa~~iF 962 (1228)
T KOG0055|consen 883 SSFKRGLISGLGFGFSQSLLFFVYALSFWYGARLISNGEMTFEDVFRVFMALSFTAMALGQASSYAPDISKAKIAAGSIF 962 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCccCCC--CcccccccccEEEeeeeeeCCCCCcccccccceeeeeCCCEEEEECCCCCCHHHHHHHHhhccCC
Q 001438 995 EVLDRKTQVIGDI--GEELTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDP 1072 (1077)
Q Consensus 995 ~~l~~~~~~~~~~--~~~~~~~~G~I~f~nVsf~Y~~~~~~~VLk~vsl~I~~GekVaIVGrTGsGKSTLi~lL~Rfyd~ 1072 (1077)
+++|++|.++++. +...++.+|+|+|+||+|+||+||+.+||+|+||+|++||+|||||||||||||+++||+|||||
T Consensus 963 ~i~dr~~~i~~~~~~~~~~~~~~G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp 1042 (1228)
T KOG0055|consen 963 EILDRKPTIDPDSTSGGKLPNVKGDIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDP 1042 (1228)
T ss_pred HHhcCCCCCCCCCCCCCccccceeEEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 9999999887643 33356789999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCC
Q 001438 1073 TAGKA 1077 (1077)
Q Consensus 1073 ~~G~i 1077 (1077)
.+|+|
T Consensus 1043 ~~G~V 1047 (1228)
T KOG0055|consen 1043 DAGKV 1047 (1228)
T ss_pred CCCeE
Confidence 99986
No 2
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=5.1e-134 Score=1246.40 Aligned_cols=979 Identities=20% Similarity=0.278 Sum_probs=741.6
Q ss_pred hhhhHHHHHHhhchhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccCCchhhhhHHHHHHHHHHHHHHHHHHHH
Q 001438 39 RSVSLFKLFAFADFYDYILMSLGSIGACVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSS 118 (1077)
Q Consensus 39 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (1077)
+.+++.+.+..+.++......+..++......+.|. ++..+++.+.... . ....++.+++..++..++.
T Consensus 187 ~~psl~~al~~~f~~~~~~~~~~~~~~~~~~~~~P~---lL~~li~~~~~~~-~-------~~~~g~~~a~~lf~~~~l~ 255 (1381)
T KOG0054|consen 187 KKPSLLRALLRTFGRTFLLSGIFLFLRDLAGFVGPL---LLKKLILFFSEKR-L-------PLNNGYLLAVLLFLASLLQ 255 (1381)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHH---HHHHHHHHhcCCC-c-------ccchhHHHHHHHHHHHHHH
Confidence 456677776666666554444444444444677775 5677887654220 0 0111223333333334444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhcc---CCChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 119 WIEVSCWMYTGERQAAKMRMAYLRSMLNQDISLFDT---EASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFI 195 (1077)
Q Consensus 119 ~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~---~~~~G~i~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~ 195 (1077)
.+....+.+...+.+.++|..+...++++.+..... ..++|+++|.+++|+++++++. .+++.+|..+..++
T Consensus 256 ~l~~~~~~~~~~~~g~r~R~al~~~IY~K~L~ls~~~~~~~t~G~ivNlms~D~~ri~~~~-----~~~h~~w~~Plqi~ 330 (1381)
T KOG0054|consen 256 SLLLHQYFFVSFRVGMRLRSALISAIYRKALRLSNSARGETTVGEIVNLMSVDAQRLSDAA-----CFLHLLWSAPLQII 330 (1381)
T ss_pred HHHHhHHHHHHHhhhhhHHHHHHHHHHHhhhcCchhhccCCCcchhhhhhhhhHHHHHHHH-----HHHHHHHHHHHHHH
Confidence 444456778899999999999999999888876543 1378999999999999999986 69999999999999
Q ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHH
Q 001438 196 IGFARVWQI----SLVTLSIVPLIALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEAL 271 (1077)
Q Consensus 196 ~~~~~~~~l----~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~~~~~~~~~~ 271 (1077)
++.++.|.+ +++.++++.+++.+..+.+++..+..++..+..+++.+.++|.++|||+||+|+||+.|.+++++.|
T Consensus 331 ~~l~lLy~~LG~sa~~G~~~~il~~p~n~~~a~~~~~~q~~~m~~~D~Rik~~nEiL~~IkviK~yaWE~~F~~~I~~~R 410 (1381)
T KOG0054|consen 331 LALYLLYGLLGPSALAGVAVMVLLIPLNSFLAKKIAKFQKRLMKRKDERIKLMNEILNGIKVIKLYAWEKPFLKKIEDLR 410 (1381)
T ss_pred HHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhHhhhhHhhHHHHHHHHHHHH
Confidence 999988875 4445555556666677788888888889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcccCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 001438 272 SNTYKYGRKAGLAKGLGLGSMHCVLFLSWSLLVWYVSVV-VHKHISNGGESFTTMLNVVIAGLSLGQAAPDITAFIRAKA 350 (1077)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-v~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 350 (1077)
++|.+..+|.++++++...+..+.+.++.++. ++.+. ...+.+++..+|+++..+..+..|+..++..+..+.++.+
T Consensus 411 ~~El~~lrk~~~~~~~~~~~~~~~p~lv~~~t--F~~~v~~~~~~lt~~~aF~slalfniLr~pl~~~P~~i~~~vqa~V 488 (1381)
T KOG0054|consen 411 QKELKLLRKSAYLSALNSFLNFFSPVLVSVVT--FVVFVLLLGNLLTASTAFTSLALFNILRFPLFMLPSVISQLVQAKV 488 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhhccCccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998887777776654443 44444 4567889999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCcccccccccCCCCCCCcccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHH
Q 001438 351 AAYPIFEMIERDTMSKASSKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLI 430 (1077)
Q Consensus 351 s~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l 430 (1077)
|.+|+.+++..++....... .....+.+..++++|.+|+|++....+.|+||||+|++|+++|||||+|||||||+++|
T Consensus 489 S~~Ri~~fl~~~e~~~~~~~-~~~~~~~~~~i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~Ai 567 (1381)
T KOG0054|consen 489 SLKRLKEFLLSEELDPDSVE-RSPDEAGENAIEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAI 567 (1381)
T ss_pred HHHHHHHHhcCcccCccccc-cCCCCCCCceEEEeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHH
Confidence 99999999987654322111 01222334579999999999864445599999999999999999999999999999999
Q ss_pred hcccCCCccEEEECCeeCCCCCHHHHhhheeEEccCCCcccccHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHhcCcc
Q 001438 431 ERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDD--ATMEEITRAAKLSEAMSFISNLPE 508 (1077)
Q Consensus 431 ~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~ 508 (1077)
+|++++.+|++.++| .++||||+||+|+|||||||+||.|. .+|+++.+||.+. .+++.||+
T Consensus 568 LGEm~~~sG~v~v~g-------------siaYv~Q~pWI~ngTvreNILFG~~~d~~rY~~Vi~aC~L~---~Dle~Lp~ 631 (1381)
T KOG0054|consen 568 LGEMPKLSGSVAVNG-------------SVAYVPQQPWIQNGTVRENILFGSPYDEERYDKVIKACALK---KDLEILPF 631 (1381)
T ss_pred hcCcccccceEEEcC-------------eEEEeccccHhhCCcHHHhhhcCccccHHHHHHHHHHccCH---hHHhhcCC
Confidence 999999999999999 49999999999999999999999853 3556666666654 45778999
Q ss_pred chhhhhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHH-HHHHHHHhCCCeEEEEccCchhHhhcCE
Q 001438 509 RFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSV-QEALDRVMVGRTTVVVAHRLSTIRNADV 587 (1077)
Q Consensus 509 g~~t~~~~~g~~LSgGqkqri~lARal~~~p~illlDEpts~lD~~~~~~i-~~~l~~~~~~~t~i~vtH~~~~~~~~d~ 587 (1077)
|+.|+|||+|.+|||||||||+||||+|+|+||+|||||+||+|+|+.+++ .++|+...++||+|+|||+++++++||+
T Consensus 632 GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~~L~~ad~ 711 (1381)
T KOG0054|consen 632 GDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQFLPHADQ 711 (1381)
T ss_pred CCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchhhhhhCCE
Confidence 999999999999999999999999999999999999999999999987776 7788888899999999999999999999
Q ss_pred EEEEECCEEEEecChhHHhcCCCchHHHHHHHHHHhhhcCCCCCCCCCCCCccccccccccCCCCcccccccccc-hhhc
Q 001438 588 IAVVQGRKIVKTGSHEELISNPNSAYAALVQLQEAASQQSNSSQCPNMGRPLSIKFSRELSGTRTSFGASFRSEK-ESVL 666 (1077)
Q Consensus 588 i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 666 (1077)
|++|+||+|.+.|+|+|+++. ...|.++......+............ +. ....... +.....+...++ ...+
T Consensus 712 Iivl~~G~I~~~Gty~el~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~--~~---~~~~~~~-~~~~~~~~~~~~~~~~~ 784 (1381)
T KOG0054|consen 712 IIVLKDGKIVESGTYEELLKS-GGDFAELAHEEESEQEEEASEKDLES--GE---SSRESES-RSLESLSSEEEKSKDEK 784 (1381)
T ss_pred EEEecCCeEecccCHHHHHhc-chhHHHHhhccchhhccccccccccc--cc---cccchhh-hhhhhhccccccccccc
Confidence 999999999999999999976 77777774332222211100000000 00 0000000 000000000000 0000
Q ss_pred ccCCCCCCCccccccchHHHHHhhcccchHHHHHHHHHHHHHhhHHhHHHHHHHHHHHhhcc-CchhhH-------HHHH
Q 001438 667 SHGAADATEPATAKHVSAIKLYSMVRPDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYYM-DWDTTQ-------REVK 738 (1077)
Q Consensus 667 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-------~~~~ 738 (1077)
........+++...+...+++| +.|+..+..+.++....+......+..+..++|. .|.+.. ....
T Consensus 785 ~~~~~~~~~ee~~~G~v~~~vY------~~Y~~a~~g~~~~~~~~~~~v~~~~~~~~~~~WLs~W~~~~~~~~~~~~~~~ 858 (1381)
T KOG0054|consen 785 EEEDKLVQEEERETGKVSWSVY------KKYIKAAGGFLLVLLILLLFVLTQVLQIASNYWLSYWTDDGEDNGTTTVSTS 858 (1381)
T ss_pred chhhHHHHHHHHhcCEeeHHHH------HHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCCCcc
Confidence 0000000111123344444444 5565553333322222233333444555556665 332211 2345
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccccCCchhHHHHHhhcHHHHHHHHHhhH
Q 001438 739 KITILFCCAAVITVIVHAIEHLSFGIMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRS 818 (1077)
Q Consensus 739 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~Lr~~l~~~llr~p~~FFD~~~~~~G~IlnR~s~D~~~i~~~l~~~l 818 (1077)
.+.++|.+++++..++..++.+.+...+.+++++||++|+++++|+||+||| +||+|||+||||+|++.+|..+|..+
T Consensus 859 ~~~~vY~~l~~~~~~~~~~rs~~~~~~~l~aS~~Lh~~ml~~Ilrapm~FFd--tTP~GRILNRFSkD~~~vD~~Lp~~~ 936 (1381)
T KOG0054|consen 859 FYLGVYALLGVASSLLTLLRSFLFAKGGLKASRKLHDKLLNSILRAPMSFFD--TTPTGRILNRFSKDIDTVDVLLPFTL 936 (1381)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhcC--CCCccchhhhcccchHHHHHhhHHHH
Confidence 6788999999999999999999999999999999999999999999999999 49999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHh--------HHHHHHHcchH
Q 001438 819 TILIQNFGLVTASFVIAFILNWRITLVVVATYPLIISGHISEKLFFQGYGGNLSKAYLKAN--------MLAAEAVSNIR 890 (1077)
Q Consensus 819 ~~~~~~~~~~~~~i~i~~~~~w~l~l~~l~~~Pl~i~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~Etl~Gi~ 890 (1077)
..+++++++++++++++.+..| +++++++|+.+++++++.+|. ..+|+..|+. .+++|+++|+.
T Consensus 937 ~~~~~~~~~~l~~~~vi~~~~P---~fli~~~pl~v~~~~~~~~Y~-----~tsReLkRLesitRSPi~sh~~Etl~Gls 1008 (1381)
T KOG0054|consen 937 EFFLQSLLNVLGILVVISYVTP---WFLIAIIPLGVIYYFVQRYYL-----ATSRELKRLESITRSPIYSHFSETLQGLS 1008 (1381)
T ss_pred HHHHHHHHHHHHHHHHhhHHhH---HHHHHHHHHHHHHHHHHHHHH-----HHhHHHHHhhhcccchHHHhHHHHhcCcc
Confidence 9999999999999999999987 667788888887765555444 4455555554 46789999999
Q ss_pred HHHHhcchHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHH
Q 001438 891 TVAAFCSEDKVLELYSRELVEPSKRSFIRGQIAGIFYGISQFFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTA 970 (1077)
Q Consensus 891 tIrAf~~e~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~ 970 (1077)
|||||+.|++|.++|.+++|.+++..+ ....+..|+++..-++...+.+...+-+.+...+..++|..-..+.+.+...
T Consensus 1009 TIRAf~~~~rf~~~~~~~~D~~~~~~f-~~~~a~RWla~Rle~ig~~~v~~~al~~vl~~~~~~~~g~vGLslsyal~lt 1087 (1381)
T KOG0054|consen 1009 TIRAFGKEERFIQENDELIDENSRAFF-LSISANRWLAVRLELLGNLVVLIAALFAVLLPSGLISPGLVGLSLSYALQLT 1087 (1381)
T ss_pred eeeeccccHHHHHHHHHHhhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcchHHHHHHHHHHHH
Confidence 999999999999999999999987755 4566777777776666555544444434443333344554444444555555
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHcCCCCccC----CCCcccccccccEEEeeeeeeCCCCCcccccccceeeeeCC
Q 001438 971 LAMGETLALVPDLLKGNQMAASVFEVLDRKTQVIG----DIGEELTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAG 1046 (1077)
Q Consensus 971 ~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~----~~~~~~~~~~G~I~f~nVsf~Y~~~~~~~VLk~vsl~I~~G 1046 (1077)
..+........++++.+.++||+.++.+.++|.+. ..+++.||.+|+|+|+|+++||+++. ++|||||||+|+||
T Consensus 1088 ~~l~~~vR~~~elEn~m~SVERv~eY~~~~~E~p~~~~~~~pp~~WP~~G~I~f~~~~~RYrp~l-p~VLk~is~~I~p~ 1166 (1381)
T KOG0054|consen 1088 GLLQWLVRQSSELENNMVSVERVLEYTDIPSEAPLEIEESRPPPSWPSKGEIEFEDLSLRYRPNL-PLVLKGISFTIKPG 1166 (1381)
T ss_pred HHHHHHHHHHHHHHhcchhhhHHHHHhcCCCCCCCCCcCCCCCCCCCCCCeEEEEEeEEEeCCCC-cchhcCceEEEcCC
Confidence 55566667778889999999999999997766221 12556689999999999999997664 45899999999999
Q ss_pred CEEEEECCCCCCHHHHHHHHhhccCCCCCCC
Q 001438 1047 KSMALVGQSGSGKSTVLSLILRFYDPTAGKA 1077 (1077)
Q Consensus 1047 ekVaIVGrTGsGKSTLi~lL~Rfyd~~~G~i 1077 (1077)
||||||||||||||||+++|||+.||.+|+|
T Consensus 1167 eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I 1197 (1381)
T KOG0054|consen 1167 EKVGIVGRTGAGKSSLILALFRLVEPAEGEI 1197 (1381)
T ss_pred ceEEEeCCCCCCHHHHHHHHHHhcCccCCeE
Confidence 9999999999999999999999999999986
No 3
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=2.4e-129 Score=1266.66 Aligned_cols=1023 Identities=27% Similarity=0.443 Sum_probs=846.9
Q ss_pred hhhhHHHHHHhhchhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccCCchhhhhHHHHHHHHHHHHHHHHHHHH
Q 001438 39 RSVSLFKLFAFADFYDYILMSLGSIGACVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSS 118 (1077)
Q Consensus 39 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (1077)
.+.+++++++|..++++.+++++++++++.+++.|+++++++.++|.+... .....+++.+++++++.+++.
T Consensus 43 ~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~p~~~~i~g~iid~~~~~--------~~~~~~~~~~~~~~i~~~~~~ 114 (1466)
T PTZ00265 43 QKIPFFLPFKCLPASHRKLLGVSFVCATISGGTLPFFVSVFGVIMKNMNLG--------ENVNDIIFSLVLIGIFQFILS 114 (1466)
T ss_pred ccccHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--------chHHHHHHHHHHHHHHHHHHH
Confidence 445799999999988888899999999999999999999999999975311 112334555667777888899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccCCChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 119 WIEVSCWMYTGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGF 198 (1077)
Q Consensus 119 ~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~i~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (1077)
+++.+++.+.++++..++|.++|++++++|++|||.. ++|++++++++|++.+++.++..+..++..++++++++++++
T Consensus 115 ~~~~~~~~~~~~~~~~~lR~~~~~~ll~~~~~~fd~~-~~~~l~s~l~~d~~~i~~~i~~~~~~~~~~~~~~i~~~i~~~ 193 (1466)
T PTZ00265 115 FISSFCMDVVTTKILKTLKLEFLKSVFYQDGQFHDNN-PGSKLTSDLDFYLEQVNAGIGTKFITIFTYASAFLGLYIWSL 193 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999984 889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHH
Q 001438 199 ARVWQISLVTLSIVPLIALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYG 278 (1077)
Q Consensus 199 ~~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~ 278 (1077)
+++|.|++++++++|+++++..++.++.++..+..++..++..+.++|+++|+++||+|+.|+.+.++|.+..++..+..
T Consensus 194 ~~sw~Lalv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~f~~~~~~~~~~~ 273 (1466)
T PTZ00265 194 FKNARLTLCITCVFPLIYICGVICNKKVKINKKTSLLYNNNTMSIIEEALVGIRTVVSYCGEKTILKKFNLSEKLYSKYI 273 (1466)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhccCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998888888888899999999999999999999999999999999999999989
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------ccCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 001438 279 RKAGLAKGLGLGSMHCVLFLSWSLLVWYVSVVVHKH--------ISNGGESFTTMLNVVIAGLSLGQAAPDITAFIRAKA 350 (1077)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~--------~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 350 (1077)
.+...+.++..++..++.++++++++|+|++++..| .+++|.+++++++.+.....+..+.+.+..++++++
T Consensus 274 ~k~~~~~~~~~~~~~~~~~~~~~l~~~~G~~lv~~g~~~~~~~~~~t~g~v~~~~~~~l~~~~~l~~i~~~~~~~~~a~~ 353 (1466)
T PTZ00265 274 LKANFMESLHIGMINGFILASYAFGFWYGTRIIISDLSNQQPNNDFHGGSVISILLGVLISMFMLTIILPNITEYMKSLE 353 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999888888888889999999999999875 478898888777766666667777788899999999
Q ss_pred HHHHHHHHhccCcccccccccCCCCCCCcccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHH
Q 001438 351 AAYPIFEMIERDTMSKASSKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLI 430 (1077)
Q Consensus 351 s~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l 430 (1077)
|++|++++++.+++.+.. ..+...+. .+.|+++||+|+|+++++.++|+|+||+|++||++|||||||||||||+++|
T Consensus 354 a~~ri~~ii~~~~~~~~~-~~~~~~~~-~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL 431 (1466)
T PTZ00265 354 ATNSLYEIINRKPLVENN-DDGKKLKD-IKKIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLI 431 (1466)
T ss_pred HHHHHHHHHcCCCCCCCC-CCCccCCC-CCcEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHH
Confidence 999999999887654321 11111122 2479999999999865555799999999999999999999999999999999
Q ss_pred hcccCCCccEEEE-CCeeCCCCCHHHHhhheeEEccCCCcccccHHHHHhcCCC--------------------------
Q 001438 431 ERFYEPLSGEILL-DGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKD-------------------------- 483 (1077)
Q Consensus 431 ~g~~~~~~G~i~~-~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~-------------------------- 483 (1077)
+|+|+|++|+|.+ ||.++++++.+++|++||||+|+|.+|++||+|||.+|..
T Consensus 432 ~gl~~p~~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 511 (1466)
T PTZ00265 432 ERLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKR 511 (1466)
T ss_pred HHhccCCCCeEEEeCCcchhhCCHHHHHHhccEecccccchhccHHHHHHhcCCCccccchhcccccccccccccccccc
Confidence 9999999999999 5799999999999999999999999999999999999741
Q ss_pred -------------------------------CCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHH
Q 001438 484 -------------------------------DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAIS 532 (1077)
Q Consensus 484 -------------------------------~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lA 532 (1077)
..+++++.++|+.+++++++..+|+|++|.+|++|.+|||||||||+||
T Consensus 512 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIA 591 (1466)
T PTZ00265 512 NSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIA 591 (1466)
T ss_pred ccccccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHH
Confidence 2356789999999999999999999999999999999999999999999
Q ss_pred HHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEccCchhHhhcCEEEEEECC----------------
Q 001438 533 RAIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRNADVIAVVQGR---------------- 594 (1077)
Q Consensus 533 Ral~~~p~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~~~~d~i~~l~~G---------------- 594 (1077)
||++++|+|||||||||+||+++++.+++.|+++. +|+|+|+||||+++++.||+|++|++|
T Consensus 592 RAll~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls~i~~aD~Iivl~~g~~g~~~~~~~~~~~~~ 671 (1466)
T PTZ00265 592 RAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTIRYANTIFVLSNRERGSTVDVDIIGEDPT 671 (1466)
T ss_pred HHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHhCCEEEEEeCCcccccccccccccccc
Confidence 99999999999999999999999999999999885 489999999999999999999999986
Q ss_pred -------------------------------EEEEecChhHHhcCCCchHHHHHHHHHHhhhcCC-C--CCCCC---CCC
Q 001438 595 -------------------------------KIVKTGSHEELISNPNSAYAALVQLQEAASQQSN-S--SQCPN---MGR 637 (1077)
Q Consensus 595 -------------------------------~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~---~~~ 637 (1077)
+|+|+|+|+||+++.++.|+.+++.|........ . ..... ...
T Consensus 672 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ive~Gth~~L~~~~~g~y~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~ 751 (1466)
T PTZ00265 672 KDNKENNNKNNKDDNNNNNNNNNNKINNAGSYIIEQGTHDALMKNKNGIYYTMINNQKVSSKKSSNNDNDKDSDMKSSAY 751 (1466)
T ss_pred ccccccccccccccccccccccccccccCCceeEeeCCHHHHHhccCCcHHHHHhhhccccccccccccccccccccccc
Confidence 5999999999998558999999987754321110 0 00000 000
Q ss_pred Cccc-cc-cccccC---CCCcccccccccch-hhcccCCCCC-C----Cc----cccccchHHHHHhhcccchHHHHHHH
Q 001438 638 PLSI-KF-SRELSG---TRTSFGASFRSEKE-SVLSHGAADA-T----EP----ATAKHVSAIKLYSMVRPDWTYGVCGT 702 (1077)
Q Consensus 638 ~~~~-~~-~~~~~~---~~~~~~~~~~~~~~-~~~~~~~~~~-~----~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 702 (1077)
+... .. .++... .+............ .....+.... . ++ .........+++++.+++++.+.+++
T Consensus 752 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 831 (1466)
T PTZ00265 752 KDSERGYDPDEMNGNSKHENESASNKKSCKMSDENASENNAGGKLPFLRNLFKRKPKAPNNLRIVYREIFSYKKDVTIIA 831 (1466)
T ss_pred cccccccccccccccccccccccccccccccccccccchhccccchhhhhccccccccchhHHHHHHHHHHHHHHHHHHH
Confidence 0000 00 000000 00000000000000 0000000000 0 00 01111134556667777777788888
Q ss_pred HHHHHHhhHHhHHHHHHHHHHHhhccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 703 ICAIIAGAQMPLFALGVSQALVAYYMDWDTTQREVKKITILFCCAAVITVIVHAIEHLSFGIMGERLTLRVREKMFSAIL 782 (1077)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~Lr~~l~~~ll 782 (1077)
+++++.++..|+++++++.+++.++.. .........|.+++++++++.+++.+++.+++.++++++..++|.++|++++
T Consensus 832 ~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~l~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~lR~~lf~~ll 910 (1466)
T PTZ00265 832 LSILVAGGLYPVFALLYAKYVSTLFDF-ANLEANSNKYSLYILVIAIAMFISETLKNYYNNVIGEKVEKTMKRRLFENIL 910 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999876532 1112234567788888888999999999999999999999999999999999
Q ss_pred cCCccccccccCCchhHHHHHhhcHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 783 SNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQNFGLVTASFVIAFILNWRITLVVVATYPLIISGHISEKL 862 (1077)
Q Consensus 783 r~p~~FFD~~~~~~G~IlnR~s~D~~~i~~~l~~~l~~~~~~~~~~~~~i~i~~~~~w~l~l~~l~~~Pl~i~~~~~~~~ 862 (1077)
++|++|||++++++|++++|+++|++.++..+...+..++..++.++++++++++++|++++++++++|++........+
T Consensus 911 ~~~~~~fd~~~~~~G~l~srl~~Dv~~l~~~~~~~l~~~~~~i~~~i~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~ 990 (1466)
T PTZ00265 911 YQEISFFDQDKHAPGLLSAHINRDVHLLKTGLVNNIVIFTHFIVLFLVSMVMSFYFCPIVAAVLTGTYFIFMRVFAIRAR 990 (1466)
T ss_pred cCCHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999767999999999999999999999999999999999999999999999999998877666555433332222
Q ss_pred HHHh--hh-------------hhHHHHHHHHhHHHHHHHcchHHHHHhcchHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 001438 863 FFQG--YG-------------GNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRSFIRGQIAGIFY 927 (1077)
Q Consensus 863 ~~~~--~~-------------~~~~~~~~~~~~~~~Etl~Gi~tIrAf~~e~~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 927 (1077)
.... .. ...++...+.+..++|+++|++|||+|+.|+++.++|.+..+...+...+.....++++
T Consensus 991 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1070 (1466)
T PTZ00265 991 LTANKDVEKKEINQPGTVFAYNSDDEIFKDPSFLIQEAFYNMNTVIIYGLEDYFCNLIEKAIDYSNKGQKRKTLVNSMLW 1070 (1466)
T ss_pred HHHHHHHHhhhccccccccchhhhHHHHHHHHHHHHHHHhcHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1110 00 01233466778889999999999999999999999999999999988888899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHcCCCCccCC-
Q 001438 928 GISQFFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLALVPDLLKGNQMAASVFEVLDRKTQVIGD- 1006 (1077)
Q Consensus 928 ~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~- 1006 (1077)
++.+.+.++..++++|+|+.++..|.++++++++++++..+...+++.+..+.++++++..+++|++++++.+++++..
T Consensus 1071 ~~~~~~~~~~~~~~~~~G~~lv~~g~it~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~a~~a~~ri~~ll~~~~~~~~~~ 1150 (1466)
T PTZ00265 1071 GFSQSAQLFINSFAYWFGSFLIRRGTILVDDFMKSLFTFLFTGSYAGKLMSLKGDSENAKLSFEKYYPLIIRKSNIDVRD 1150 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCcCCCCC
Confidence 9999999999999999999999999999999999887777777778889999999999999999999999987654321
Q ss_pred -CCcc---cccccccEEEeeeeeeCCCCCcccccccceeeeeCCCEEEEECCCCCCHHHHHHHHhhccCCC
Q 001438 1007 -IGEE---LTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPT 1073 (1077)
Q Consensus 1007 -~~~~---~~~~~G~I~f~nVsf~Y~~~~~~~VLk~vsl~I~~GekVaIVGrTGsGKSTLi~lL~Rfyd~~ 1073 (1077)
.+.. .++.+|.|+|+||+|+||++|+.+||+|+||+|+|||+||||||||||||||++||+|||||+
T Consensus 1151 ~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~ 1221 (1466)
T PTZ00265 1151 NGGIRIKNKNDIKGKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLK 1221 (1466)
T ss_pred CcccccccCCCCCceEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCc
Confidence 1111 123568999999999999877778999999999999999999999999999999999999993
No 4
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=7.8e-116 Score=1150.57 Aligned_cols=904 Identities=18% Similarity=0.230 Sum_probs=642.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCchhhccCCChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Q 001438 127 YTGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFARVW-QIS 205 (1077)
Q Consensus 127 ~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~i~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~ 205 (1077)
+.+.++...++..+|+++++++..++++ .++|+++|++++|++++++.+. .+ +.++..+..+++.+++.| .++
T Consensus 367 ~~~~~ir~~L~~~i~~k~L~l~~~~~~~-~~~G~ivnl~s~Dv~~i~~~~~-~l----~~l~~~pl~ii~~~~lL~~~lg 440 (1622)
T PLN03130 367 RVGFRLRSTLVAAVFRKSLRLTHEGRKK-FTSGKITNLMTTDAEALQQICQ-QL----HTLWSAPFRIIIAMVLLYQQLG 440 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHhcCChhhcCC-CCHHHHHHHHHHHHHHHHHHHH-HH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666678899999999999887 4899999999999999999863 33 333333333333322222 233
Q ss_pred HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 206 LVTLS---IVPLIALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGRKAG 282 (1077)
Q Consensus 206 l~~l~---~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 282 (1077)
+..++ ++.+++.+..++.++.++..++..+..+++.+.++|.++|+++||+|+||+.+.+++++.++++.+..++..
T Consensus 441 ~~~l~g~~v~~l~~~l~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gi~~IK~~~~E~~~~~~i~~~r~~e~~~~~~~~ 520 (1622)
T PLN03130 441 VASLIGSLMLVLMFPIQTFIISKMQKLTKEGLQRTDKRIGLMNEVLAAMDTVKCYAWENSFQSKVQTVRDDELSWFRKAQ 520 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33222 222333444556677777778888888899999999999999999999999999999999999999888877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhccC
Q 001438 283 LAKGLGLGSMHCVLFLSWSLLVWYVSVVVHKHISNGGESFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEMIERD 362 (1077)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~ 362 (1077)
...++...+...... .+.++++|++.+..+.+++|.+|+++.++..+..|+..++..+..+.+++++++|+.++++.+
T Consensus 521 ~~~~~~~~~~~~~~~--~v~~~~fg~~~~~~g~Lt~g~vf~~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~~L~~~ 598 (1622)
T PLN03130 521 LLSAFNSFILNSIPV--LVTVVSFGVFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNLITQAVNANVSLKRLEELLLAE 598 (1622)
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 776665544333222 245567788888899999999999888888888899998889999999999999999999765
Q ss_pred cccccccccCCCCCCCcccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCc-cEE
Q 001438 363 TMSKASSKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLS-GEI 441 (1077)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~-G~i 441 (1077)
+..+.... ...+..+.|+++|++|+|++++++++|+|+||+|++||+++||||||||||||+++|+|+++|.+ |+|
T Consensus 599 e~~~~~~~---~~~~~~~~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I 675 (1622)
T PLN03130 599 ERVLLPNP---PLEPGLPAISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASV 675 (1622)
T ss_pred ccccccCC---cccCCCCceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceE
Confidence 43211110 11112347999999999986444679999999999999999999999999999999999999999 999
Q ss_pred EECCeeCCCCCHHHHhhheeEEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCC
Q 001438 442 LLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQL 521 (1077)
Q Consensus 442 ~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~L 521 (1077)
.+.| +|+||+|+||+|++||||||.||.+ .++++..++++.+++.++++.||+|++|.+||+|.+|
T Consensus 676 ~l~~-------------~Iayv~Q~p~LfngTIreNI~fg~~-~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~L 741 (1622)
T PLN03130 676 VIRG-------------TVAYVPQVSWIFNATVRDNILFGSP-FDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNI 741 (1622)
T ss_pred EEcC-------------eEEEEcCccccCCCCHHHHHhCCCc-ccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCC
Confidence 8655 6999999999999999999999986 4788889999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHH-HHHHHHHhCCCeEEEEccCchhHhhcCEEEEEECCEEEEec
Q 001438 522 SGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSV-QEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTG 600 (1077)
Q Consensus 522 SgGqkqri~lARal~~~p~illlDEpts~lD~~~~~~i-~~~l~~~~~~~t~i~vtH~~~~~~~~d~i~~l~~G~i~~~g 600 (1077)
||||||||+||||+|++||||||||||||||+++++++ .++++...+++|+|+|||+++.++.||+|++|++|+|+++|
T Consensus 742 SGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l~~aD~Ii~L~~G~i~e~G 821 (1622)
T PLN03130 742 SGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEEG 821 (1622)
T ss_pred CHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEEECCHhHHHhCCEEEEEeCCEEEEeC
Confidence 99999999999999999999999999999999999877 56777777899999999999999999999999999999999
Q ss_pred ChhHHhcCCCchHHHHHHHHHHhhhcCCCCCCCCCCCCccccccccccCCCCcccccccccchhhcccCCCCCCCccccc
Q 001438 601 SHEELISNPNSAYAALVQLQEAASQQSNSSQCPNMGRPLSIKFSRELSGTRTSFGASFRSEKESVLSHGAADATEPATAK 680 (1077)
Q Consensus 601 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 680 (1077)
+|+|++++ ++.|.+++..+....+............... ............ .. .......+.......+++.+..
T Consensus 822 t~~eL~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~e~~~~ 896 (1622)
T PLN03130 822 TYEELSNN-GPLFQKLMENAGKMEEYVEENGEEEDDQTSS-KPVANGNANNLK--KD-SSSKKKSKEGKSVLIKQEERET 896 (1622)
T ss_pred CHHHHHhc-chhHHHHHHhccccccccccccccccccccc-cccccccccccc--cc-ccccccccccchhhhhHHHHhc
Confidence 99999976 7788888765422111110000000000000 000000000000 00 0000000000000001111222
Q ss_pred cchHHHHHhhcccchHHHHHHHHHHHHHhhHHhHHHHHHHHHHHhhccC-chh----hHHHHHHHHHHHHHHHHHHHHHH
Q 001438 681 HVSAIKLYSMVRPDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYYMD-WDT----TQREVKKITILFCCAAVITVIVH 755 (1077)
Q Consensus 681 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~~~~~~l~~~~~~~~ 755 (1077)
+...+.+|. .|+........+.......+..........+|.. |.+ ..+....|.++|++++++..++.
T Consensus 897 g~v~~~vy~------~Y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~i~~~l~~~~~i~~ 970 (1622)
T PLN03130 897 GVVSWKVLE------RYKNALGGAWVVMILFLCYVLTEVFRVSSSTWLSEWTDQGTPKTHGPLFYNLIYALLSFGQVLVT 970 (1622)
T ss_pred CccCHHHHH------HHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHHHHHHH
Confidence 222233332 2222110000000000001111111222333332 211 01123456677888888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccccCCchhHHHHHhhcHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 001438 756 AIEHLSFGIMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQNFGLVTASFVIA 835 (1077)
Q Consensus 756 ~~~~~~~~~~~~~~~~~Lr~~l~~~llr~p~~FFD~~~~~~G~IlnR~s~D~~~i~~~l~~~l~~~~~~~~~~~~~i~i~ 835 (1077)
+++.+++...+.+++.++|+++|++++++|++|||+ +|+|+|+|||++|++.+|..++..+..++..++.++++++++
T Consensus 971 ~~~~~~~~~~~~~~~~~L~~~l~~~ll~~p~~ffd~--~~~G~IlnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~i 1048 (1622)
T PLN03130 971 LLNSYWLIMSSLYAAKRLHDAMLGSILRAPMSFFHT--NPLGRIINRFAKDLGDIDRNVAVFVNMFLGQIFQLLSTFVLI 1048 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhcc--CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999995 999999999999999999999999999999999999999988
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH----HHHHHHhHHHHHHHcchHHHHHhcchHHHHHHHHHHhhh
Q 001438 836 FILNWRITLVVVATYPLIISGHISEKLFFQGYGGNLS----KAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVE 911 (1077)
Q Consensus 836 ~~~~w~l~l~~l~~~Pl~i~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~Etl~Gi~tIrAf~~e~~~~~~f~~~~~~ 911 (1077)
++.+|. .+++++|+.+++..+..++ ++..++.+ ...+...+++.|+++|++|||||+.|++|.+++.+..+.
T Consensus 1049 ~~~~~~---~~~~~~pl~~~~~~~~~~~-~~~~r~~~r~~~~~~s~~~~~~~Etl~Gi~tIraf~~~~~f~~~~~~~~~~ 1124 (1622)
T PLN03130 1049 GIVSTI---SLWAIMPLLVLFYGAYLYY-QSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMAEINGRSMDN 1124 (1622)
T ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcchHHHHHHHHhCCHHHHHhCcHHHHHHHHHHHHHHH
Confidence 888873 3344455544443333322 22222222 223445577899999999999999999999999888888
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhcCC-CC-----HHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Q 001438 912 PSKRSFIRGQIAGIFYGISQFFIFSSYGLALWYGSV-LMGKEL-AS-----FKSVMKSFMVLIVTALAMGETLALVPDLL 984 (1077)
Q Consensus 912 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-l~~~~~-~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 984 (1077)
+.+..+..... ..|.+....+. .++.+++++. .+..+. .. .+.+-..+.+.......+..+......++
T Consensus 1125 ~~~~~~~~~~~-~~wl~~~l~~~---~~~~i~~~~~~~v~~~~~~~~~~~~~~~~G~~ls~~~~~~~~l~~l~~~~~~~e 1200 (1622)
T PLN03130 1125 NIRFTLVNMSS-NRWLAIRLETL---GGLMIWLTASFAVMQNGRAENQAAFASTMGLLLSYALNITSLLTAVLRLASLAE 1200 (1622)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHH---HHHHHHHHHHHHHHcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77665543322 33333222111 1222233322 232221 11 11111122233334445555566677889
Q ss_pred HHHHHHHHHHHHHcCCCCccC----CCCcccccccccEEEeeeeeeCCCCCcccccccceeeeeCCCEEEEECCCCCCHH
Q 001438 985 KGNQMAASVFEVLDRKTQVIG----DIGEELTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKS 1060 (1077)
Q Consensus 985 ~~~~a~~ri~~~l~~~~~~~~----~~~~~~~~~~G~I~f~nVsf~Y~~~~~~~VLk~vsl~I~~GekVaIVGrTGsGKS 1060 (1077)
+++.+.+|+.++++.+++.+. ..+.+.||.+|.|+|+||+|+|+++. ++||||+||+|+||||||||||||||||
T Consensus 1201 ~~~~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~-~~VL~~is~~I~~GekVaIVGrSGSGKS 1279 (1622)
T PLN03130 1201 NSLNAVERVGTYIDLPSEAPLVIENNRPPPGWPSSGSIKFEDVVLRYRPEL-PPVLHGLSFEISPSEKVGIVGRTGAGKS 1279 (1622)
T ss_pred HHHHHHHHHHHHhCCCCcccccccCCCCCCCCCCCCcEEEEEEEEEeCCCC-CceecceeEEEcCCCEEEEECCCCCCHH
Confidence 999999999999987766432 11223357789999999999997542 3689999999999999999999999999
Q ss_pred HHHHHHhhccCCCCCCC
Q 001438 1061 TVLSLILRFYDPTAGKA 1077 (1077)
Q Consensus 1061 TLi~lL~Rfyd~~~G~i 1077 (1077)
||+++|+|||||++|+|
T Consensus 1280 TLl~lL~rl~~p~~G~I 1296 (1622)
T PLN03130 1280 SMLNALFRIVELERGRI 1296 (1622)
T ss_pred HHHHHHhCcCCCCCceE
Confidence 99999999999999986
No 5
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=3.3e-115 Score=1146.70 Aligned_cols=903 Identities=18% Similarity=0.221 Sum_probs=649.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCchhhccCCChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Q 001438 126 MYTGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFARVWQ-I 204 (1077)
Q Consensus 126 ~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~i~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l 204 (1077)
.+.+.++...++..+|+++++.+...+++ .++|+++|++++|++++++.. . .++.++..+..+++.+++.|. +
T Consensus 366 ~~~~~~ir~~l~~~i~~k~l~l~~~~~~~-~~~G~i~n~ls~Dv~~i~~~~-~----~l~~l~~~p~~ii~~~~~l~~~l 439 (1495)
T PLN03232 366 GRVGFRLRSTLVAAIFHKSLRLTHEARKN-FASGKVTNMITTDANALQQIA-E----QLHGLWSAPFRIIVSMVLLYQQL 439 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCChhhcCC-CCHHHHHHHHHHHHHHHHHHH-H----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666778999999999998887 489999999999999999975 2 344444444444444433333 4
Q ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH
Q 001438 205 SLVTLSIVPL---IALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGRKA 281 (1077)
Q Consensus 205 ~l~~l~~~pl---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 281 (1077)
++..++.+++ ++.+..++.++..+..++.++..+++.+.++|.++||++||+|+||+.+.+++++.++++.+..++.
T Consensus 440 g~~~l~~~~v~~l~~pl~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~gi~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~ 519 (1495)
T PLN03232 440 GVASLFGSLILFLLIPLQTLIVRKMRKLTKEGLQWTDKRVGIINEILASMDTVKCYAWEKSFESRIQGIRNEELSWFRKA 519 (1495)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4433333322 2223455677788888888888999999999999999999999999999999999999999988888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcc
Q 001438 282 GLAKGLGLGSMHCVLFLSWSLLVWYVSVVVHKHISNGGESFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEMIER 361 (1077)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~ 361 (1077)
....++...+..... ..+.++++|++.+.++.+|+|.+|+++.++..+..|+..++..+..+.+++++.+|+.++++.
T Consensus 520 ~~~~~~~~~~~~~~~--~~~~~~~fg~~~v~~~~lt~g~vf~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~L~~ 597 (1495)
T PLN03232 520 QLLSAFNSFILNSIP--VVVTLVSFGVFVLLGGDLTPARAFTSLSLFAVLRSPLNMLPNLLSQVVNANVSLQRIEELLLS 597 (1495)
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 777666544332222 223456788888888999999999998888888889998888999999999999999999986
Q ss_pred CcccccccccCCCCCCCcccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEE
Q 001438 362 DTMSKASSKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441 (1077)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i 441 (1077)
+++.+... ....+..+.|+++|++|+|++++++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|.+
T Consensus 598 ~~~~~~~~---~~~~~~~~~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i 674 (1495)
T PLN03232 598 EERILAQN---PPLQPGAPAISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSS 674 (1495)
T ss_pred cccccccc---CCcCCCCCcEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCE
Confidence 54322111 111112347999999999986444679999999999999999999999999999999999999999876
Q ss_pred EECCeeCCCCCHHHHhhheeEEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCC
Q 001438 442 LLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQL 521 (1077)
Q Consensus 442 ~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~L 521 (1077)
. ++|++|+||+|+||+|++||||||.||.+ .++++..++++.+++.++++.+|+|++|.+||+|.+|
T Consensus 675 ~------------~~~~~Iayv~Q~p~Lf~gTIreNI~fg~~-~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~L 741 (1495)
T PLN03232 675 V------------VIRGSVAYVPQVSWIFNATVRENILFGSD-FESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNI 741 (1495)
T ss_pred E------------EecCcEEEEcCccccccccHHHHhhcCCc-cCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCccc
Confidence 3 24568999999999999999999999985 6788899999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHH-HHHHHHhCCCeEEEEccCchhHhhcCEEEEEECCEEEEec
Q 001438 522 SGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQ-EALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTG 600 (1077)
Q Consensus 522 SgGqkqri~lARal~~~p~illlDEpts~lD~~~~~~i~-~~l~~~~~~~t~i~vtH~~~~~~~~d~i~~l~~G~i~~~g 600 (1077)
||||||||+||||+|++|||+||||||||||+++++++. ++++...+++|+|+||||++.++.||+|++|++|+|+++|
T Consensus 742 SGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l~~aD~Ii~L~~G~i~~~G 821 (1495)
T PLN03232 742 SGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEG 821 (1495)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEEECChhhHHhCCEEEEEeCCEEEEec
Confidence 999999999999999999999999999999999999885 5566667899999999999999999999999999999999
Q ss_pred ChhHHhcCCCchHHHHHHHHHHhhhcCCCCCCCCCCCCccccccccccCCCCcccccccccchhhcccCCCCCCCccccc
Q 001438 601 SHEELISNPNSAYAALVQLQEAASQQSNSSQCPNMGRPLSIKFSRELSGTRTSFGASFRSEKESVLSHGAADATEPATAK 680 (1077)
Q Consensus 601 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 680 (1077)
+|+|++++ ++.|.++++.+....+..+..+ ... .. .+........ ........... .+.......++++...
T Consensus 822 t~~eL~~~-~~~~~~l~~~~~~~~~~~~~~~--~~~-~~-~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~e~~~~ 893 (1495)
T PLN03232 822 TFAELSKS-GSLFKKLMENAGKMDATQEVNT--NDE-NI-LKLGPTVTID--VSERNLGSTKQ-GKRGRSVLVKQEERET 893 (1495)
T ss_pred CHHHHHhc-chhHHHHHHhcccccccccccc--ccc-cc-cccccccccc--ccccccccccc-cccchhhhhhHHHHhc
Confidence 99999976 7888888765432111110000 000 00 0000000000 00000000000 0000000001111222
Q ss_pred cchHHHHH-hhcccchHHHHHHHHHHHHHhhHHhHHHHHHHHHHHhhcc-Cchhh----HHHHHHHHHHHHHHHHHHHHH
Q 001438 681 HVSAIKLY-SMVRPDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYYM-DWDTT----QREVKKITILFCCAAVITVIV 754 (1077)
Q Consensus 681 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~----~~~~~~~~~~~~~l~~~~~~~ 754 (1077)
+...+++| .|.+....+...+.+ ........+.....++|. .|.+. ......|..+|++++++..++
T Consensus 894 g~v~~~vy~~y~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~l~~y~~l~~~~~~~ 966 (1495)
T PLN03232 894 GIISWNVLMRYNKAVGGLWVVMIL-------LVCYLTTEVLRVSSSTWLSIWTDQSTPKSYSPGFYIVVYALLGFGQVAV 966 (1495)
T ss_pred CcccHHHHHHHHHHcCcHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhcccCCCCCCcchHHHHHHHHHHHHHHH
Confidence 22233333 232221111111110 001111112223334444 23221 112346778889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccccCCchhHHHHHhhcHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 001438 755 HAIEHLSFGIMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQNFGLVTASFVI 834 (1077)
Q Consensus 755 ~~~~~~~~~~~~~~~~~~Lr~~l~~~llr~p~~FFD~~~~~~G~IlnR~s~D~~~i~~~l~~~l~~~~~~~~~~~~~i~i 834 (1077)
.+++.+++...+.+++.++|++++++++++|++|||+ +|+|+|+|||++|++.+|..++..+..++..++.+++++++
T Consensus 967 ~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~p~~ff~~--~~~G~ilnr~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~ 1044 (1495)
T PLN03232 967 TFTNSFWLISSSLHAAKRLHDAMLNSILRAPMLFFHT--NPTGRVINRFSKDIGDIDRNVANLMNMFMNQLWQLLSTFAL 1044 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeCc--CCchHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999994 99999999999999999999999999999999988888888
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHH---HhhhhhHHHHHHHHhHHHHHHHcchHHHHHhcchHHHHHHHHHHhhh
Q 001438 835 AFILNWRITLVVVATYPLIISGHISEKLFF---QGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVE 911 (1077)
Q Consensus 835 ~~~~~w~l~l~~l~~~Pl~i~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~Etl~Gi~tIrAf~~e~~~~~~f~~~~~~ 911 (1077)
+++.+|. .+++++|+.+++.....++. +...+..+...+...++++|+++|++|||+|+.|++|.+++.+..+.
T Consensus 1045 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~~~~~~~E~l~G~~tIraf~~~~~~~~~~~~~~~~ 1121 (1495)
T PLN03232 1045 IGTVSTI---SLWAIMPLLILFYAAYLYYQSTSREVRRLDSVTRSPIYAQFGEALNGLSSIRAYKAYDRMAKINGKSMDN 1121 (1495)
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhcChHHHhcCCcHHHHHHHHHHHHHH
Confidence 8877753 33344455544333333222 11222223334455677899999999999999999999999888887
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhh-cCCC----CHHHHHH-HHHHHHHHHHHHHHHHhhhhhHH
Q 001438 912 PSKRSFIRGQIAGIFYGISQFFIFSSYGLALWYGS-VLMG-KELA----SFKSVMK-SFMVLIVTALAMGETLALVPDLL 984 (1077)
Q Consensus 912 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~l~~-~~~~----~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 984 (1077)
+.+..+.... ...|........ + ++++++++ ..+. .+.. .+...+. ++.+......++..+.....+++
T Consensus 1122 ~~~~~~~~~~-~~~wl~~~~~~~--~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~l~~~~~~~~ 1197 (1495)
T PLN03232 1122 NIRFTLANTS-SNRWLTIRLETL--G-GVMIWLTATFAVLRNGNAENQAGFASTMGLLLSYTLNITTLLSGVLRQASKAE 1197 (1495)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHH--H-HHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7766554332 233333322211 1 22333333 2232 2221 1112221 22333344455667777788899
Q ss_pred HHHHHHHHHHHHHcCCCCccCC----CCcccccccccEEEeeeeeeCCCCCcccccccceeeeeCCCEEEEECCCCCCHH
Q 001438 985 KGNQMAASVFEVLDRKTQVIGD----IGEELTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKS 1060 (1077)
Q Consensus 985 ~~~~a~~ri~~~l~~~~~~~~~----~~~~~~~~~G~I~f~nVsf~Y~~~~~~~VLk~vsl~I~~GekVaIVGrTGsGKS 1060 (1077)
.++.+.+|+.++++.+++.+.. .+.+.||.+|+|+|+||+|+|+++ .++||||+||+|+||||||||||||||||
T Consensus 1198 ~~~~s~eRi~e~~~~~~e~~~~~~~~~~~~~~p~~g~I~f~nVsf~Y~~~-~~~vL~~isl~I~~GekvaIVG~SGSGKS 1276 (1495)
T PLN03232 1198 NSLNSVERVGNYIDLPSEATAIIENNRPVSGWPSRGSIKFEDVHLRYRPG-LPPVLHGLSFFVSPSEKVGVVGRTGAGKS 1276 (1495)
T ss_pred HHHHHHHHHHHHhcCCccccccccCCCCCCCCCCCCcEEEEEEEEEECCC-CCcccccceEEEcCCCEEEEECCCCCCHH
Confidence 9999999999999877664321 122235678999999999999654 24689999999999999999999999999
Q ss_pred HHHHHHhhccCCCCCCC
Q 001438 1061 TVLSLILRFYDPTAGKA 1077 (1077)
Q Consensus 1061 TLi~lL~Rfyd~~~G~i 1077 (1077)
||+++|+|+|||++|+|
T Consensus 1277 TL~~lL~rl~~p~~G~I 1293 (1495)
T PLN03232 1277 SMLNALFRIVELEKGRI 1293 (1495)
T ss_pred HHHHHHhCCCcCCCceE
Confidence 99999999999999986
No 6
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=1.3e-111 Score=1114.24 Aligned_cols=992 Identities=16% Similarity=0.205 Sum_probs=698.0
Q ss_pred hhhHHHHHHhhchhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccCCchhhhhHHHHHHHHHHHHHHHHHHHHH
Q 001438 40 SVSLFKLFAFADFYDYILMSLGSIGACVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSSW 119 (1077)
Q Consensus 40 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (1077)
.+++.+.+..+.++.+...++..++..+..+++|+ +++.+++.+.... .+ ......++..++++.++..++..
T Consensus 304 ~~sl~~~l~~~~~~~~l~~~~~~l~~~~~~~~~P~---ll~~li~~~~~~~-~~---~~~g~~~~~~~~~~~~~~~~~~~ 376 (1522)
T TIGR00957 304 KPSLFKVLYKTFGPYFLMSFCFKAIHDLMMFIGPQ---ILSLLIRFVNDPM-AP---DWQGYFYTGLLFVCACLQTLILH 376 (1522)
T ss_pred CccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhcCCC-cc---cchHHHHHHHHHHHHHHHHHHHH
Confidence 35566665555555554444444455555666665 6678888653211 11 01111122222222223333332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccCCChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 120 IEVSCWMYTGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFA 199 (1077)
Q Consensus 120 ~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~i~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (1077)
...+...+.+.++...++..+|+|+++++...+++ .++|+++|++++|++++.+.. ..++.+|..+..++++++
T Consensus 377 ~~~~~~~~~~~~ir~~L~~~iy~K~L~l~~~~~~~-~~~G~i~nl~s~D~~~i~~~~-----~~~~~~~~~~~~i~~~~~ 450 (1522)
T TIGR00957 377 QYFHICFVSGMRIKTAVMGAVYRKALVITNSARKS-STVGEIVNLMSVDAQRFMDLA-----TYINMIWSAPLQVILALY 450 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhcCC-CCHHHHHHHHHHhHHHHHHHH-----HHHHHHHHHHHHHHHHHH
Confidence 22333445677778888888999999999999887 489999999999999998854 355566655555554444
Q ss_pred HHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHH
Q 001438 200 RVWQ----ISLVTLSIVPLIALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTY 275 (1077)
Q Consensus 200 ~~~~----l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~ 275 (1077)
+.|. .+++.++++++++.+..++.+...+..++.++..+++.+.++|.++||++||+|+||+.+.+++++.++++.
T Consensus 451 ll~~~~g~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~~ik~IK~~~~e~~~~~~i~~~r~~e~ 530 (1522)
T TIGR00957 451 FLWLNLGPSVLAGVAVMVLMVPLNAVMAMKTKTYQVAHMKSKDNRIKLMNEILNGIKVLKLYAWELAFLDKVEGIRQEEL 530 (1522)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 4443 233444455556666677778888888888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hcccCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 001438 276 KYGRKAGLAKGLGLGSMHCVLFLSWSLLVWYVSVVVH--KHISNGGESFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAY 353 (1077)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~--~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ 353 (1077)
+..++...+..+..........+ +.++.++.+.+. ++.++.+.+|+.+.++..+..|+..++..+..+.+++++.+
T Consensus 531 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~f~~~~~~~~~~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~ 608 (1522)
T TIGR00957 531 KVLKKSAYLHAVGTFTWVCTPFL--VALITFAVYVTVDENNILDAEKAFVSLALFNILRFPLNILPMVISSIVQASVSLK 608 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88877777665544332222222 222334455554 35688999999877777777899999999999999999999
Q ss_pred HHHHHhccCcccccccccCCCCCC-CcccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhc
Q 001438 354 PIFEMIERDTMSKASSKTGRKLDK-LSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIER 432 (1077)
Q Consensus 354 ri~~~l~~~~~~~~~~~~~~~~~~-~~~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g 432 (1077)
|+.++++.++..+.. .......+ ..+.|+++|++|+|++. ++++|+|+||++++||+++|+||||||||||+++|+|
T Consensus 609 Ri~~~l~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g 686 (1522)
T TIGR00957 609 RLRIFLSHEELEPDS-IERRTIKPGEGNSITVHNATFTWARD-LPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLA 686 (1522)
T ss_pred HHHHHHcCccccccc-ccccccCCCCCCcEEEEEeEEEcCCC-CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 999999865432111 00011111 12379999999999743 3469999999999999999999999999999999999
Q ss_pred ccCCCccEEEECCeeCCCCCHHHHhhheeEEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhh
Q 001438 433 FYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFET 512 (1077)
Q Consensus 433 ~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t 512 (1077)
+++|++|+|.++| +|+||||+||+|++||+|||.+|.+ .+.++..++++.+++.++++.+|+|++|
T Consensus 687 ~~~~~~G~i~~~g-------------~i~yv~Q~~~l~~~Ti~eNI~~g~~-~~~~~~~~~~~~~~l~~~l~~~~~g~~t 752 (1522)
T TIGR00957 687 EMDKVEGHVHMKG-------------SVAYVPQQAWIQNDSLRENILFGKA-LNEKYYQQVLEACALLPDLEILPSGDRT 752 (1522)
T ss_pred CCccCCcEEEECC-------------EEEEEcCCccccCCcHHHHhhcCCc-cCHHHHHHHHHHhCCHHHHHhcCCCCCc
Confidence 9999999999998 4999999999999999999999875 3445556666777777889999999999
Q ss_pred hhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHH---HhCCCeEEEEccCchhHhhcCEEE
Q 001438 513 QVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDR---VMVGRTTVVVAHRLSTIRNADVIA 589 (1077)
Q Consensus 513 ~~~~~g~~LSgGqkqri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~---~~~~~t~i~vtH~~~~~~~~d~i~ 589 (1077)
.+|++|.+||||||||++||||++++|+|+|||||||+||+++++.+.+.+.+ ..+++|+|+|||+++.++.||+|+
T Consensus 753 ~ig~~g~~LSGGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~~D~ii 832 (1522)
T TIGR00957 753 EIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVII 832 (1522)
T ss_pred eecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhhCCEEE
Confidence 99999999999999999999999999999999999999999999999988853 457899999999999999999999
Q ss_pred EEECCEEEEecChhHHhcCCCchHHHHHHHHHHhhhcCC-CCC--CC-CCCCCcc---c-----cccccccCCC----Cc
Q 001438 590 VVQGRKIVKTGSHEELISNPNSAYAALVQLQEAASQQSN-SSQ--CP-NMGRPLS---I-----KFSRELSGTR----TS 653 (1077)
Q Consensus 590 ~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~-~~~~~~~---~-----~~~~~~~~~~----~~ 653 (1077)
+|++|++++.|+++|+.++ ++.|.++...+........ ... .. ....+.. . ....+....+ ..
T Consensus 833 ~l~~G~i~~~g~~~~l~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 911 (1522)
T TIGR00957 833 VMSGGKISEMGSYQELLQR-DGAFAEFLRTYAPDEQQGHLEDSWTALVSGEGKEAKLIENGMLVTDVVGKQLQRQLSASS 911 (1522)
T ss_pred EecCCeEEeeCCHHHHHhc-chhHHHHHHhhccccccccccccccccccccccccccccccccccccccchhhhhccccc
Confidence 9999999999999999876 6778887754322111100 000 00 0000000 0 0000000000 00
Q ss_pred cccccc--c--cchhhcccCCC----C-CCCccccccchHHHHHhhcccchHHHHHH-HHHHHHHhhHHhHHHHHHHHHH
Q 001438 654 FGASFR--S--EKESVLSHGAA----D-ATEPATAKHVSAIKLYSMVRPDWTYGVCG-TICAIIAGAQMPLFALGVSQAL 723 (1077)
Q Consensus 654 ~~~~~~--~--~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 723 (1077)
...... . .....+..... . .+++.+..+...+.. |+.|+..+ ....++..+.+ ....+....
T Consensus 912 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~------y~~Y~~~~g~~~~~~~~~~~--~~~~~~~~~ 983 (1522)
T TIGR00957 912 SDSGDQSRHHGSSAELQKAEAKEETWKLMEADKAQTGQVELSV------YWDYMKAIGLFITFLSIFLF--VCNHVSALA 983 (1522)
T ss_pred cccccccccccccccccccccccchhhhHHHHHHhcCcccHHH------HHHHHHHcCHHHHHHHHHHH--HHHHHHHHH
Confidence 000000 0 00000000000 0 001111111112222 23443322 11111111111 111112222
Q ss_pred HhhccC-chh------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccccCCc
Q 001438 724 VAYYMD-WDT------TQREVKKITILFCCAAVITVIVHAIEHLSFGIMGERLTLRVREKMFSAILSNEIGWFDEMDNSS 796 (1077)
Q Consensus 724 ~~~~~~-~~~------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~Lr~~l~~~llr~p~~FFD~~~~~~ 796 (1077)
..+|.. |.+ .......|..+|++++++..++.+++.+++.+.+.++++++|+++|++++++|++|||. +|+
T Consensus 984 ~~~~l~~w~~~~~~~~~~~~~~~~~~iy~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~--~~~ 1061 (1522)
T TIGR00957 984 SNYWLSLWTDDPMVNGTQNNTSLRLSVYGALGILQGFAVFGYSMAVSIGGIQASRVLHQDLLHNKLRSPMSFFER--TPS 1061 (1522)
T ss_pred HHHHHHHHhccccccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHhcc--CCh
Confidence 333332 111 01112345567888888888888888999999999999999999999999999999995 999
Q ss_pred hhHHHHHhhcHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q 001438 797 SILASRLESDATLLRTIVVDRSTILIQNFGLVTASFVIAFILNWRITLVVVATYPLIISGHISEKLFFQGYGGNLSKAYL 876 (1077)
Q Consensus 797 G~IlnR~s~D~~~i~~~l~~~l~~~~~~~~~~~~~i~i~~~~~w~l~l~~l~~~Pl~i~~~~~~~~~~~~~~~~~~~~~~ 876 (1077)
|+|+|||++|++.+|..++..+..++..++.+++.++++++.+|.+++++++++++..+....+.+..+...+..+...+
T Consensus 1062 G~ilnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s 1141 (1522)
T TIGR00957 1062 GNLVNRFSKELDTVDSMIPPVIKMFMGSLFNVIGALIVILLATPIAAVIIPPLGLLYFFVQRFYVASSRQLKRLESVSRS 1141 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999988888655544433333322222222222222222333445
Q ss_pred HHhHHHHHHHcchHHHHHhcchHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCCC
Q 001438 877 KANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRSFIRGQIAGIFYGISQFFIFSSYGLALWYGSVLM-GKELAS 955 (1077)
Q Consensus 877 ~~~~~~~Etl~Gi~tIrAf~~e~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~-~~~~~~ 955 (1077)
...+++.|+++|++|||||++|++|.+++.+..+.+.+..+.......+.....+.+.. .++++.++..+ ..+.++
T Consensus 1142 ~l~~~~~E~l~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~ 1218 (1522)
T TIGR00957 1142 PVYSHFNETLLGVSVIRAFEEQERFIHQSDLKVDENQKAYYPSIVANRWLAVRLECVGN---CIVLFAALFAVISRHSLS 1218 (1522)
T ss_pred HHHHHHHHHhCCcHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhcCCCC
Confidence 56688899999999999999999999999999999888877655555554444443322 23333444443 357789
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHcCCCCccC--C--CCcccccccccEEEeeeeeeCCCCC
Q 001438 956 FKSVMKSFMVLIVTALAMGETLALVPDLLKGNQMAASVFEVLDRKTQVIG--D--IGEELTNVEGTIELRGVHFSYPSRP 1031 (1077)
Q Consensus 956 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~--~--~~~~~~~~~G~I~f~nVsf~Y~~~~ 1031 (1077)
++.+..++.+......++..+.....++++++.+++|+.++++.+++.+. + .+.+.||.+|+|+|+||+|+|++++
T Consensus 1219 ~g~l~~~l~~~~~~~~~l~~l~~~~~~~e~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~ 1298 (1522)
T TIGR00957 1219 AGLVGLSVSYSLQVTFYLNWLVRMSSEMETNIVAVERLKEYSETEKEAPWQIQETAPPSGWPPRGRVEFRNYCLRYREDL 1298 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccCCCCCCCCCCCCcEEEEEEEEEeCCCC
Confidence 99988888888888889999999999999999999999999987765431 1 1222357789999999999998653
Q ss_pred cccccccceeeeeCCCEEEEECCCCCCHHHHHHHHhhccCCCCCCC
Q 001438 1032 EVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKA 1077 (1077)
Q Consensus 1032 ~~~VLk~vsl~I~~GekVaIVGrTGsGKSTLi~lL~Rfyd~~~G~i 1077 (1077)
++|||||||+|+||||||||||||||||||+++|+|||||++|+|
T Consensus 1299 -~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I 1343 (1522)
T TIGR00957 1299 -DLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEI 1343 (1522)
T ss_pred -cccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeE
Confidence 358999999999999999999999999999999999999999986
No 7
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=2.1e-105 Score=1051.12 Aligned_cols=998 Identities=15% Similarity=0.169 Sum_probs=678.1
Q ss_pred hhHHHHHHhhchhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccCCchhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 001438 41 VSLFKLFAFADFYDYILMSLGSIGACVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSSWI 120 (1077)
Q Consensus 41 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (1077)
.++.+.+....++.....++..++..+..++.|+ +++.+++.+... . ........+.+.+++..++..++...
T Consensus 232 ~~l~~~l~~~~~~~~~~~~~~~l~~~~~~l~~P~---ll~~~v~~l~~~--~--~~~~~g~~l~~~l~~~~~~~~~~~~~ 304 (1560)
T PTZ00243 232 LSLLRTLFAALPYYVWWQIPFKLLSDVCTLTLPV---LLKYFVKFLDAD--N--ATWGRGLGLVLTLFLTQLIQSVCLHR 304 (1560)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhcCC--C--cchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455544444444433333344444455566665 567777754211 1 10010111111222222233333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhcc-CCChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 121 EVSCWMYTGERQAAKMRMAYLRSMLNQDISLFDT-EASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFA 199 (1077)
Q Consensus 121 ~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~-~~~~G~i~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (1077)
+.+...+.+.++...++..+|+|+++.+...+.+ +.++|+++|++++|++++++++. .+..++...+.++++++++..
T Consensus 305 ~~~~~~r~~~~~r~~L~~~if~K~l~ls~~~~~~~~~~~G~i~nl~s~Dv~~i~~~~~-~~~~l~~~Pl~li~~~~lL~~ 383 (1560)
T PTZ00243 305 FYYISIRCGLQYRSALNALIFEKCFTISSKSLAQPDMNTGRIINMMSTDVERINSFMQ-YCMYLWSSPMVLLLSILLLSR 383 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhCCCCCCHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 3333344455555556666788888877765542 13789999999999999999873 233333344444444444443
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Q 001438 200 RVWQISLVTLSIVPLIALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGR 279 (1077)
Q Consensus 200 ~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~ 279 (1077)
+..+.+++.++++++++.+..++.++..+..++..+..+++.+.++|.++|||+||+++||+.|.+++++.++++.+..+
T Consensus 384 ~lG~~al~gv~vl~v~~pl~~~~~k~~~~~~~~~~~~~D~Ri~~~~E~l~gIr~IK~~~wE~~f~~ri~~~R~~El~~l~ 463 (1560)
T PTZ00243 384 LVGWCALMAVAVLLVTLPLNGAIMKHQMAARRKIAKAADARVKATNEFFSGIRIAKFMAWEPCFVANIEDKRARELRYLR 463 (1560)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33345666666666666677777888888888888889999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh
Q 001438 280 KAGLAKGLGLGSMHCVLFLSWSLLVWYVSVVVHKHISNGGESFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEMI 359 (1077)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l 359 (1077)
+.....++...+....+.++.+ +.++++.+..+.++++.+|+++.++..+..|+..++..+..+.++.+|++||.+++
T Consensus 464 ~~~~~~~~~~~~~~~~p~l~~~--~~f~~y~~~g~~Lt~~~vft~laL~~~L~~Pl~~lp~~~~~~~~a~vS~~RI~~fL 541 (1560)
T PTZ00243 464 DVQLARVATSFVNNATPTLMIA--VVFTVYYLLGHELTPEVVFPTIALLGVLRMPFFMIPWVFTTVLQFLVSIKRISTFL 541 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888877766555454444433 34556777788999999999998888889999999999999999999999999999
Q ss_pred ccCcccc----cc-c---------c--c------C-----------------------------------CCCCCCcccE
Q 001438 360 ERDTMSK----AS-S---------K--T------G-----------------------------------RKLDKLSGHI 382 (1077)
Q Consensus 360 ~~~~~~~----~~-~---------~--~------~-----------------------------------~~~~~~~~~i 382 (1077)
+.++... +. + . . + +......+.+
T Consensus 542 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 621 (1560)
T PTZ00243 542 ECDNATCSTVQDMEEYWREQREHSTACQLAAVLENVDVTAFVPVKLPRAPKVKTSLLSRALRMLCCEQCRPTKRHPSPSV 621 (1560)
T ss_pred cCccccccccccchhhcccccccccccccccccccccccccccccccccccccccccccchhhccccccccccccccccc
Confidence 7644100 00 0 0 0 0 0000011346
Q ss_pred EEEeEEEEcCCC-------------------------------------CCcccccceeEEecCCcEEEEEcCCCCcHHH
Q 001438 383 EFKDVSFCYPSR-------------------------------------PDVAIFDKFCLDIPAGKIVALVGGSGSGKST 425 (1077)
Q Consensus 383 ~~~~v~~~y~~~-------------------------------------~~~~~l~~isl~i~~g~~~~ivG~~GsGKST 425 (1077)
.++|+++.++.. .++++|+|+||+|++||+++|+|||||||||
T Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~isl~i~~G~~~~IiG~nGsGKST 701 (1560)
T PTZ00243 622 VVEDTDYGSPSSASRHIVEGGTGGGHEATPTSERSAKTPKMKTDDFFELEPKVLLRDVSVSVPRGKLTVVLGATGSGKST 701 (1560)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccCCceeEeeeEEEECCCCEEEEECCCCCcHHH
Confidence 777877765310 1245899999999999999999999999999
Q ss_pred HHHHHhcccCCCccEEEECCeeCCCCCHHHHhhheeEEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhc
Q 001438 426 VISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISN 505 (1077)
Q Consensus 426 l~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~ 505 (1077)
|+++|+|+++|++|+|.+++ +|||+||+||+|++|++|||.++.+ .+.++..++.+.+++.++++.
T Consensus 702 LL~~i~G~~~~~~G~i~~~~-------------~i~yv~Q~~~l~~~Tv~enI~~~~~-~~~~~~~~~~~~~~l~~~l~~ 767 (1560)
T PTZ00243 702 LLQSLLSQFEISEGRVWAER-------------SIAYVPQQAWIMNATVRGNILFFDE-EDAARLADAVRVSQLEADLAQ 767 (1560)
T ss_pred HHHHHhcCCCCCCcEEEECC-------------eEEEEeCCCccCCCcHHHHHHcCCh-hhHHHHHHHHHHhhhHHHHHH
Confidence 99999999999999998753 6999999999999999999999864 234455666676777888999
Q ss_pred CccchhhhhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHH-HHHHHhCCCeEEEEccCchhHhh
Q 001438 506 LPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQE-ALDRVMVGRTTVVVAHRLSTIRN 584 (1077)
Q Consensus 506 l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~p~illlDEpts~lD~~~~~~i~~-~l~~~~~~~t~i~vtH~~~~~~~ 584 (1077)
+|+|++|.+|++|.+|||||||||+||||++.+|+|+|||||||+||+++.+.+.+ ++....+|+|+|+|||+++.++.
T Consensus 768 l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~~~~ 847 (1560)
T PTZ00243 768 LGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVHVVPR 847 (1560)
T ss_pred hhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHh
Confidence 99999999999999999999999999999999999999999999999998887755 45555578999999999999999
Q ss_pred cCEEEEEECCEEEEecChhHHhcCCCchHHHHHHHHHHhhhcCCCCCCCCCCCCccccccccccCCCCcccccc-cccch
Q 001438 585 ADVIAVVQGRKIVKTGSHEELISNPNSAYAALVQLQEAASQQSNSSQCPNMGRPLSIKFSRELSGTRTSFGASF-RSEKE 663 (1077)
Q Consensus 585 ~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 663 (1077)
||+|++|++|++++.|+++|++++ +.|..+........+..+.....+........................ .....
T Consensus 848 ad~ii~l~~G~i~~~G~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 925 (1560)
T PTZ00243 848 ADYVVALGDGRVEFSGSSADFMRT--SLYATLAAELKENKDSKEGDADAEVAEVDAAPGGAVDHEPPVAKQEGNAEGGDG 925 (1560)
T ss_pred CCEEEEEECCEEEEecCHHHHHhC--hHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999999999999864 457766543221111000000000000000000000000000000000 00000
Q ss_pred hhcccC-CCCCCCccccccchHHHHHhhcccchHHHHHHHHHHHHHhhHHhHHHHHHHHHHHhhccC-chhh--HHHHHH
Q 001438 664 SVLSHG-AADATEPATAKHVSAIKLYSMVRPDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYYMD-WDTT--QREVKK 739 (1077)
Q Consensus 664 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~ 739 (1077)
...... ....+++.+..+...++.| +.|+........+......++...+......+|.. |... ......
T Consensus 926 ~~~~~~~~~l~~~e~~~~g~v~~~~y------~~Y~~~~g~~~~~~~~l~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~ 999 (1560)
T PTZ00243 926 AALDAAAGRLMTREEKASGSVPWSTY------VAYLRFCGGLHAAGFVLATFAVTELVTVSSGVWLSMWSTRSFKLSAAT 999 (1560)
T ss_pred cccccccchhhhHHHHhcCcccHHHH------HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCccc
Confidence 000000 0000011111122223222 34433221111111110111111111222334432 2211 112234
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccccCCchhHHHHHhhcHHHHHHHHHhhHH
Q 001438 740 ITILFCCAAVITVIVHAIEHLSFGIMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRST 819 (1077)
Q Consensus 740 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~Lr~~l~~~llr~p~~FFD~~~~~~G~IlnR~s~D~~~i~~~l~~~l~ 819 (1077)
|..+|+++.++..++.+++.+.....+.+.++++|+++|++++++|++|||. +|+|+|+|||++|++.+|..++..+.
T Consensus 1000 ~l~~y~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ffd~--~~~G~ilnR~s~Di~~id~~l~~~l~ 1077 (1560)
T PTZ00243 1000 YLYVYLGIVLLGTFSVPLRFFLSYEAMRRGSRNMHRDLLRSVSRGTMSFFDT--TPLGRILNRFSRDIDILDNTLPMSYL 1077 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhccC--CCccHHHHHHHhhHHHHHHHHHHHHH
Confidence 5667777777777777777777777888899999999999999999999995 99999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH----HHHHHHhHHHHHHHcchHHHHHh
Q 001438 820 ILIQNFGLVTASFVIAFILNWRITLVVVATYPLIISGHISEKLFFQGYGGNLS----KAYLKANMLAAEAVSNIRTVAAF 895 (1077)
Q Consensus 820 ~~~~~~~~~~~~i~i~~~~~w~l~l~~l~~~Pl~i~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~Etl~Gi~tIrAf 895 (1077)
.++..++.++++++++++.+|. ++++++|+++++..+..+ +.+..++.+ ...+....+++|+++|++|||+|
T Consensus 1078 ~~~~~~~~~i~~li~~~~~~p~---~~~~~i~~~~~~~~i~~~-~~~~~r~~~r~~~~~~s~l~s~~~E~l~G~~tIraf 1153 (1560)
T PTZ00243 1078 YLLQCLFSICSSILVTSASQPF---VLVALVPCGYLYYRLMQF-YNSANREIRRIKSVAKSPVFTLLEEALQGSATITAY 1153 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhcHHHHHHHHHHcCHHHHHhC
Confidence 9999999999999999988883 344455555444333332 222333333 34455678889999999999999
Q ss_pred cchHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhcCCCCHHHHHHHHHHHHHHHHHH
Q 001438 896 CSEDKVLELYSRELVEPSKRSFIRGQIAGIFYGISQFFIFSSYGLALWYGSVL--MGKELASFKSVMKSFMVLIVTALAM 973 (1077)
Q Consensus 896 ~~e~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l--~~~~~~~~~~~~~~~~~~~~~~~~~ 973 (1077)
+.|++|.++|.+.++.+.+..+.......+.....+++......++.+++... ...+..+++.+..++.+......++
T Consensus 1154 ~~e~~~~~~~~~~~d~~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~a~~l~~~l 1233 (1560)
T PTZ00243 1154 GKAHLVMQEALRRLDVVYSCSYLENVANRWLGVRVEFLSNIVVTVIALIGVIGTMLRATSQEIGLVSLSLTMAMQTTATL 1233 (1560)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988776655555555555554444444433444332 2334467776666666667777888
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHcCCCCcc-C---------------------------CCCc---ccccccccEEEee
Q 001438 974 GETLALVPDLLKGNQMAASVFEVLDRKTQVI-G---------------------------DIGE---ELTNVEGTIELRG 1022 (1077)
Q Consensus 974 ~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~-~---------------------------~~~~---~~~~~~G~I~f~n 1022 (1077)
..+.....++++++.+.+|++++++..++.+ . ..+. +.++.+|+|+|+|
T Consensus 1234 ~~l~~~~~~le~~~~s~eRi~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~f~n 1313 (1560)
T PTZ00243 1234 NWLVRQVATVEADMNSVERLLYYTDEVPHEDMPELDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEG 1313 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccccccccccccccccccccccccccCCCcccCCCCCCCCeEEEEE
Confidence 8889999999999999999999997433211 0 0000 1123569999999
Q ss_pred eeeeCCCCCcccccccceeeeeCCCEEEEECCCCCCHHHHHHHHhhccCCCCCCC
Q 001438 1023 VHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKA 1077 (1077)
Q Consensus 1023 Vsf~Y~~~~~~~VLk~vsl~I~~GekVaIVGrTGsGKSTLi~lL~Rfyd~~~G~i 1077 (1077)
|+|+|+++ .++|||||||+|+||||||||||||||||||+++|+|+|||++|+|
T Consensus 1314 Vsf~Y~~~-~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I 1367 (1560)
T PTZ00243 1314 VQMRYREG-LPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEI 1367 (1560)
T ss_pred EEEEeCCC-CCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEE
Confidence 99999764 2458999999999999999999999999999999999999999986
No 8
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=2.4e-105 Score=1051.05 Aligned_cols=987 Identities=18% Similarity=0.222 Sum_probs=664.4
Q ss_pred hhhHHHHHHhhchhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccCCchhhhhHHHHHHHHHHHHHHHHHHHHH
Q 001438 40 SVSLFKLFAFADFYDYILMSLGSIGACVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSSW 119 (1077)
Q Consensus 40 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (1077)
.+++.+.+..+.++.+...++..++..+..+++|+ +++.+++.+.+.. . ........++..++++.++..++..
T Consensus 67 ~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~P~---ll~~li~~~~~~~--~-~~~~~~~~l~~~~~~~~~~~~l~~~ 140 (1490)
T TIGR01271 67 NPKLLNALRRCFFWRFVFYGILLYFGEATKAVQPL---LLGRIIASYDPFN--A-PEREIAYYLALGLCLLFIVRTLLLH 140 (1490)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhccCC--C-CchhHHHHHHHHHHHHHHHHHHHHH
Confidence 34566655445455544444444555556667775 5678887652110 0 0001111122222222233333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccCCChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 120 IEVSCWMYTGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFA 199 (1077)
Q Consensus 120 ~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~i~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (1077)
...+.....+.++-..+...+|+|+++.+...+++ .++|+++|++++|++++.+.+... ..+....+.+++++++++.
T Consensus 141 ~~~~~~~~~~~~~r~~L~~~iy~K~L~l~~~~~~~-~~~g~i~nl~s~Dv~~i~~~~~~~-~~~~~~pi~i~~~~~lL~~ 218 (1490)
T TIGR01271 141 PAIFGLHHLGMQMRIALFSLIYKKTLKLSSRVLDK-ISTGQLVSLLSNNLNKFDEGLALA-HFVWIAPLQVILLMGLIWE 218 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhcC-CCHHHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 23333333444444555555699999999998887 489999999999999999976421 2222333333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Q 001438 200 RVWQISLVTLSIVPLIALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGR 279 (1077)
Q Consensus 200 ~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~ 279 (1077)
.....+++.++++++++.+..++.+...+..++.++..+++.+.++|.++|||+||+|+||+.|.+++++.++++.+..+
T Consensus 219 ~~G~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~l~~ik~IK~~~~E~~~~~~i~~~R~~El~~~~ 298 (1490)
T TIGR01271 219 LLEVNGFCGLGFLILLALFQACLGQKMMPYRDKRAGKISERLAITSEIIENIQSVKAYCWEEAMEKIIKNIRQDELKLTR 298 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 34445667777778888888888899989999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHH
Q 001438 280 KAGLAKGLGLGSMHCVLFLSWSLLVWYVSVVVHKHISNGGESFTTMLNVVIAGLSLG-QAAPDITAFIRAKAAAYPIFEM 358 (1077)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~g~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~s~~ri~~~ 358 (1077)
+...+..+...+..+... .+.++.++.+.+..+ .+++.+|+++.++..+..++. .++..+..+.++.++++||.++
T Consensus 299 ~~~~~~~~~~~~~~~~~~--~~~~~~f~~y~~~~~-~~~~~~ft~lal~~lL~~~l~~~lp~~~~~~~~a~~s~~RI~~f 375 (1490)
T TIGR01271 299 KIAYLRYFYSSAFFFSGF--FVVFLSVVPYALIKG-IILRRIFTTISYCIVLRMTVTRQFPGAIQTWYDSLGAITKIQDF 375 (1490)
T ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 887776554443333332 234455566665544 678999998777777666764 5777888999999999999999
Q ss_pred hccCcccccccccCCCCCCCcccEEEEeEEEEcCCCC-------------------------------CcccccceeEEe
Q 001438 359 IERDTMSKASSKTGRKLDKLSGHIEFKDVSFCYPSRP-------------------------------DVAIFDKFCLDI 407 (1077)
Q Consensus 359 l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~-------------------------------~~~~l~~isl~i 407 (1077)
++.++..+. . . ......++++|++|.|+... .+++|+|+||+|
T Consensus 376 L~~~e~~~~-~---~--~~~~~~i~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~i~l~i 449 (1490)
T TIGR01271 376 LCKEEYKTL-E---Y--NLTTTEVEMVNVTASWDEGIGELFEKIKQNNKARKQPNGDDGLFFSNFSLYVTPVLKNISFKL 449 (1490)
T ss_pred hcCcccccc-c---c--cCCCCceEEecceEecCCccccccccccccccccccccccccccccccccccCcceeeeEEEE
Confidence 986543211 0 0 01123589999999995310 135899999999
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhheeEEccCCCcccccHHHHHhcCCCCCCH
Q 001438 408 PAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATM 487 (1077)
Q Consensus 408 ~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~~~~~ 487 (1077)
++||+++|+||||||||||+++|+|+++|++|+|.++| +|+||+|+||+|++||+|||.||.+ .+.
T Consensus 450 ~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g-------------~iayv~Q~~~l~~~Ti~eNI~~g~~-~~~ 515 (1490)
T TIGR01271 450 EKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG-------------RISFSPQTSWIMPGTIKDNIIFGLS-YDE 515 (1490)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC-------------EEEEEeCCCccCCccHHHHHHhccc-cch
Confidence 99999999999999999999999999999999999998 4999999999999999999999864 333
Q ss_pred HHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHH-HHHHH
Q 001438 488 EEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQE-ALDRV 566 (1077)
Q Consensus 488 ~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~p~illlDEpts~lD~~~~~~i~~-~l~~~ 566 (1077)
++..++++.+++.++++.+|+|++|.+|++|.+|||||||||+||||++++|+|+||||||||||+++++.+.+ ++.+.
T Consensus 516 ~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~ 595 (1490)
T TIGR01271 516 YRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKL 595 (1490)
T ss_pred HHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 33444555556677899999999999999999999999999999999999999999999999999999999987 56777
Q ss_pred hCCCeEEEEccCchhHhhcCEEEEEECCEEEEecChhHHhcCCCchHHHHHHHHHHhh----h-c-----C-------C-
Q 001438 567 MVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAALVQLQEAAS----Q-Q-----S-------N- 628 (1077)
Q Consensus 567 ~~~~t~i~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~----~-~-----~-------~- 628 (1077)
.+++|+|+|||+++.++.||+|++|++|++++.|+++++... ++.|...+....... + . + .
T Consensus 596 ~~~~tvilvtH~~~~~~~ad~ii~l~~g~i~~~g~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (1490)
T TIGR01271 596 MSNKTRILVTSKLEHLKKADKILLLHEGVCYFYGTFSELQAK-RPDFSSLLLGLEAFDNFSAERRNSILTETLRRVSIDG 674 (1490)
T ss_pred hcCCeEEEEeCChHHHHhCCEEEEEECCEEEEEcCHHHHHhc-ChHHHHHHhcccccccccccccccccccccccccccc
Confidence 789999999999999999999999999999999999999875 556666553110000 0 0 0 0
Q ss_pred ---------C------CCCCC--CCCCcc---c----------------c---ccccccCCCCc-------cc------c
Q 001438 629 ---------S------SQCPN--MGRPLS---I----------------K---FSRELSGTRTS-------FG------A 656 (1077)
Q Consensus 629 ---------~------~~~~~--~~~~~~---~----------------~---~~~~~~~~~~~-------~~------~ 656 (1077)
. .+.+. ..++.. . . ...+....... .. .
T Consensus 675 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 754 (1490)
T TIGR01271 675 DSTVFSGPETIKQSFKQPPPEFAEKRKQSIILNPIASARKFSFVQMGPQKAQATTIEDAVREPSERKFSLVPEDEQGEES 754 (1490)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhcccccccccccccccccccc
Confidence 0 00000 000000 0 0 00000000000 00 0
Q ss_pred cccc----------------------c-------c-h---h--------------hc--------ccC-----CCC----
Q 001438 657 SFRS----------------------E-------K-E---S--------------VL--------SHG-----AAD---- 672 (1077)
Q Consensus 657 ~~~~----------------------~-------~-~---~--------------~~--------~~~-----~~~---- 672 (1077)
.... . . . . .. ..+ ..+
T Consensus 755 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 834 (1490)
T TIGR01271 755 LPRGNQYHHGLQHQAQRRQSVLQLMTHSNRGENRREQLQTSFRKKSSITQQNELASELDIYSRRLSKDSVYEISEEINEE 834 (1490)
T ss_pred cccccccccccccccccccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhh
Confidence 0000 0 0 0 0 00 000 000
Q ss_pred ------CCCccccccchHHHHHhhcccchHHHHHHHHHHHHHhhHHhHHHHHHHHHHHhhcc-Cchhh-------H-H--
Q 001438 673 ------ATEPATAKHVSAIKLYSMVRPDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYYM-DWDTT-------Q-R-- 735 (1077)
Q Consensus 673 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-------~-~-- 735 (1077)
.+++....+...+++| +.|+..+.....+..++...+...+...+.++|. .|+.. . .
T Consensus 835 ~~~~~~~~~e~~~~g~v~~~vY------~~Y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~ 908 (1490)
T TIGR01271 835 DLKECFADERENVFETTTWNTY------LRYITTNRNLVFVLIFCLVIFLAEVAASLLGLWLITDNPSAPNYVDQQHANA 908 (1490)
T ss_pred hhhhhhhHHHHhhcCcccHHHH------HHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhHHHHhcccccccccccccccC
Confidence 0000011122223333 4444332111111111111122233444445555 33210 0 0
Q ss_pred -------------HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccccCCchhHHH
Q 001438 736 -------------EVKKI-TILFCCAAVITVIVHAIEHLSFGIMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILAS 801 (1077)
Q Consensus 736 -------------~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~Lr~~l~~~llr~p~~FFD~~~~~~G~Iln 801 (1077)
...+| .++|++++++..++.+++.+++...+.++++++|.+++++++++|++|||. +|+|+|+|
T Consensus 909 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~--~~~G~iln 986 (1490)
T TIGR01271 909 SSPDVQKPVIITPTSAYYIFYIYVGTADSVLALGFFRGLPLVHTLLTVSKRLHEQMLHSVLQAPMAVLNT--MKAGRILN 986 (1490)
T ss_pred CCccccccccccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCC--CChhHHHH
Confidence 11122 334445555566677889999999999999999999999999999999995 99999999
Q ss_pred HHhhcHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH----HHHHHH
Q 001438 802 RLESDATLLRTIVVDRSTILIQNFGLVTASFVIAFILNWRITLVVVATYPLIISGHISEKLFFQGYGGNL----SKAYLK 877 (1077)
Q Consensus 802 R~s~D~~~i~~~l~~~l~~~~~~~~~~~~~i~i~~~~~w~l~l~~l~~~Pl~i~~~~~~~~~~~~~~~~~----~~~~~~ 877 (1077)
||++|++.+|..++..+..++..++.+++.++++++.+|.+. ++++|++++++.+..++.+. .++. ....+.
T Consensus 987 Rfs~Di~~id~~l~~~~~~~~~~~~~~i~~l~~i~~~~p~l~---l~~~~l~~~~~~~~~~~~~~-~r~l~~~~~~~~s~ 1062 (1490)
T TIGR01271 987 RFTKDMAIIDDMLPLTLFDFIQLTLIVLGAIFVVSVLQPYIF---IAAIPVAVIFIMLRAYFLRT-SQQLKQLESEARSP 1062 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhH
Confidence 999999999999999999999999999999999999888553 34555555544444333332 2322 223344
Q ss_pred HhHHHHHHHcchHHHHHhcchHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhhcCCCC
Q 001438 878 ANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRSFIRGQIAGIFYGISQFFIFSSYGL--ALWYGSVLMGKELAS 955 (1077)
Q Consensus 878 ~~~~~~Etl~Gi~tIrAf~~e~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~~l~~~~~~~ 955 (1077)
...++.|+++|+.|||||++|++|.++|.+..+.+.+..+.......+.....+.+....... .++++.. ...
T Consensus 1063 l~~~~~Etl~Gl~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~i~~~~~~~~~~l~~~~~-----~~~ 1137 (1490)
T TIGR01271 1063 IFSHLITSLKGLWTIRAFGRQSYFETLFHKALNLHTANWFLYLSTLRWFQMRIDIIFVFFFIAVTFIAIGTN-----QDG 1137 (1490)
T ss_pred HHHHHHHHhcCHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCC
Confidence 557889999999999999999999999999999876655544333333332333222211111 1122221 122
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHcCCCCccCC------------------CCccccccccc
Q 001438 956 FKSVMKSFMVLIVTALAMGETLALVPDLLKGNQMAASVFEVLDRKTQVIGD------------------IGEELTNVEGT 1017 (1077)
Q Consensus 956 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~------------------~~~~~~~~~G~ 1017 (1077)
.+.+..++.+......++..+.....+++..+.+.+|+.++++.+++.... .+++.||.+|+
T Consensus 1138 ~g~~g~~l~~~~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~g~ 1217 (1490)
T TIGR01271 1138 EGEVGIILTLAMNILSTLQWAVNSSIDVDGLMRSVSRVFKFIDLPQEEPRPSGGGGKYQLSTVLVIENPHAQKCWPSGGQ 1217 (1490)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccccccccccccCCCCCCCCCCCe
Confidence 333333333344444556666677788999999999999999876653311 01123567899
Q ss_pred EEEeeeeeeCCCCCcccccccceeeeeCCCEEEEECCCCCCHHHHHHHHhhccCCCCCCC
Q 001438 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKA 1077 (1077)
Q Consensus 1018 I~f~nVsf~Y~~~~~~~VLk~vsl~I~~GekVaIVGrTGsGKSTLi~lL~Rfyd~~~G~i 1077 (1077)
|+|+||+|+|++. .++||+||||+|+||||||||||||||||||+++|+|+|+ .+|+|
T Consensus 1218 I~f~nVs~~Y~~~-~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~~G~I 1275 (1490)
T TIGR01271 1218 MDVQGLTAKYTEA-GRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEI 1275 (1490)
T ss_pred EEEEEEEEEeCCC-CcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEE
Confidence 9999999999764 3468999999999999999999999999999999999998 78976
No 9
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6e-106 Score=921.77 Aligned_cols=573 Identities=40% Similarity=0.625 Sum_probs=532.9
Q ss_pred hHHHHHHhhchhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 42 SLFKLFAFADFYDYILMSLGSIGACVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSSWIE 121 (1077)
Q Consensus 42 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (1077)
.+++++.++++ +|.++..+.++.++......+.|.++|+++|.+... + .........+..+.++.++..++.+++
T Consensus 134 ~~~rl~~l~~~-~~~~l~~a~~~l~vss~~~~~iP~~~G~~id~~~~~--~--~~~~~~~~~~~~l~~l~~~~a~~~~~r 208 (716)
T KOG0058|consen 134 LLKRLLGLLKP-EWKWLVAAFVLLLVSSLINMFIPYYLGKLIDTISEG--D--DSADALKRACTILLGLFLIGALANAIR 208 (716)
T ss_pred HHHHHHHHhch-hHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhc--c--chHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67788888875 455666666666666666666777899999987541 1 112334445667777888889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccCCChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 122 VSCWMYTGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFARV 201 (1077)
Q Consensus 122 ~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~i~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (1077)
.+++.+.++++..++|.++|+++++|+++|||.+ .+||++||++.|++.+.+.++..+...+.++++.++++.+|++++
T Consensus 209 ~~~~~~a~~rv~~rlR~~lF~sil~QdiaFFD~n-ktGeL~SRLtsD~~~vs~svs~nls~~lR~~~~~~g~~~~M~~~S 287 (716)
T KOG0058|consen 209 GGLLQYAGERVVARLRTDLFRSLLRQDIAFFDEN-KTGELISRLTSDTQIVSNSVSQNLSDGLRNLVQGFGGLGFMFSLS 287 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccC-CccHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhh
Confidence 9999999999999999999999999999999995 899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH
Q 001438 202 WQISLVTLSIVPLIALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGRKA 281 (1077)
Q Consensus 202 ~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 281 (1077)
|+|++++++.+|+++++..+++++.++..++.|+..++++++.+|.+++|||||+|+.|+.+.++|.+..++..+..+|.
T Consensus 288 ~~Ltlv~~i~~P~v~~~~~~yG~~~rklS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~~~~~i~~k~ 367 (716)
T KOG0058|consen 288 WRLTLVTLIVVPIVALVAKIYGKYLRKLSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLREVLKLSKKE 367 (716)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcc
Q 001438 282 GLAKGLGLGSMHCVLFLSWSLLVWYVSVVVHKHISNGGESFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEMIER 361 (1077)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~ 361 (1077)
+...++++....+...+..+.+++||++++..|.+|.|.+.++++|......++..+...++.++++..|.+|+++++|+
T Consensus 368 a~a~~~f~~~~~~~~~~~~~siL~~Gg~Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~rvFel~dr 447 (716)
T KOG0058|consen 368 AVAYGIFFGSTNLLGNLAVLSILFYGGHLVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASERVFELMDR 447 (716)
T ss_pred HHHhhHhHhHHHHHHhHHHHHHHHhccchhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhcc
Confidence 99999999988899999999999999999999999999999999999988899999999999999999999999999999
Q ss_pred CcccccccccCC-CCCCCcccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccE
Q 001438 362 DTMSKASSKTGR-KLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGE 440 (1077)
Q Consensus 362 ~~~~~~~~~~~~-~~~~~~~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~ 440 (1077)
+|..+.. +. .+....|.|+|+||+|+||.+|+.++|+|+||+|+|||.+|+||||||||||++++|.++|+|++|+
T Consensus 448 ~P~i~~~---G~~~p~~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~ 524 (716)
T KOG0058|consen 448 KPRIPLT---GTLAPDHLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGR 524 (716)
T ss_pred CCCCCCC---CccccccccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCe
Confidence 8876542 22 2225679999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEECCeeCCCCCHHHHhhheeEEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCC
Q 001438 441 ILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQ 520 (1077)
Q Consensus 441 i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~ 520 (1077)
|.+||+||++++..+||++||+|.|||.||++||+|||.||.+..++|++..|++.+++++||.++|+||||.|||+|.+
T Consensus 525 IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~q 604 (716)
T KOG0058|consen 525 ILLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQ 604 (716)
T ss_pred EEECCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhhcCEEEEEECCEEEEec
Q 001438 521 LSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTG 600 (1077)
Q Consensus 521 LSgGqkqri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~~d~i~~l~~G~i~~~g 600 (1077)
|||||||||||||||++||.||||||+|||||.++|..++++|.+..+++|||+|+||++++++||+|+|+++|+++|.|
T Consensus 605 LSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~rTVlvIAHRLSTV~~Ad~Ivvi~~G~V~E~G 684 (716)
T KOG0058|consen 605 LSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQGRTVLVIAHRLSTVRHADQIVVIDKGRVVEMG 684 (716)
T ss_pred ccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhcCCeEEEEehhhhHhhhccEEEEEcCCeEEecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHhcCCCchHHHHHHHHHHh
Q 001438 601 SHEELISNPNSAYAALVQLQEAA 623 (1077)
Q Consensus 601 ~~~~l~~~~~~~~~~~~~~~~~~ 623 (1077)
+|+||++++++.|.++++.|...
T Consensus 685 ~h~eLl~~~~gly~~Lv~~q~~~ 707 (716)
T KOG0058|consen 685 THDELLSKPNGLYAKLVQRQLDS 707 (716)
T ss_pred cHHHHhhCcccHHHHHHHHhccc
Confidence 99999999889999999887643
No 10
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=3.3e-103 Score=947.86 Aligned_cols=579 Identities=43% Similarity=0.709 Sum_probs=545.8
Q ss_pred hhhhHHHHHHhhchhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccCCchhhhhHHHHHHHHHHHHHHHHHHHH
Q 001438 39 RSVSLFKLFAFADFYDYILMSLGSIGACVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSS 118 (1077)
Q Consensus 39 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (1077)
...++++++++.++ +|.++++|++++++.|...|++.+++++++..+... +++........|++++++++++..++.
T Consensus 648 ~~~s~~~i~k~~~p-e~~~l~lG~i~a~i~G~~~P~fa~~~s~~~~~f~~~--~~~~~~~~~~~~al~f~~l~~~~~i~~ 724 (1228)
T KOG0055|consen 648 EKVSFWRIFKLNKP-EWPYLLLGSLGAAIRGATYPLFAYVFSQVLEAFYPP--DDDELKREVRAWALIFLGLGIVSGITN 724 (1228)
T ss_pred ccccHHHHHHhccc-hhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCC--ChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46689999998775 789999999999999999999999999999987532 112222333348899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccCCChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 119 WIEVSCWMYTGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGF 198 (1077)
Q Consensus 119 ~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~i~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (1077)
+++++++.+.++++..|+|...|++++++++.|||...++|.|.+|+.+|...++..+++.+..+++++..++++++++|
T Consensus 725 ~~q~~~f~~~ge~Lt~R~R~~~F~~ll~qd~~wFD~~~nsg~l~~RLa~Da~~vr~~v~~rl~~vv~~~~~~~~~iiiaf 804 (1228)
T KOG0055|consen 725 FLQHYFFGIAGEKLTKRLRSMMFRALLRQEVGWFDDPENSGALSSRLATDASNVRAAVGDRLSLVVQNIAAVIIGIIIAF 804 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCccchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999755559999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHH
Q 001438 199 ARVWQISLVTLSIVPLIALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYG 278 (1077)
Q Consensus 199 ~~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~ 278 (1077)
+++|+|+++++++.|++++..+...+++.....+..+.+.+.++++.|++++||||++|+.|+++.+.|.+..++..+..
T Consensus 805 ~~~W~lalv~la~~Pll~~~~~~~~~~~~~~~~~~~~~~~ea~~iA~eai~NIrTV~al~~e~~~~~~y~~~l~~p~~~~ 884 (1228)
T KOG0055|consen 805 IYGWRLALVVLATFPLLILSGYLQKKFLKGFSKDDKKAYEEASKIAIEAVSNIRTVAALCAEEKFMELYKEELEKPRKSS 884 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 001438 279 RKAGLAKGLGLGSMHCVLFLSWSLLVWYVSVVVHKHISNGGESFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEM 358 (1077)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~ 358 (1077)
.|.+.+.++.+++.+++.++++++.+|||++++.+|.+++.++|.++..+.+....+++.....+.+.+|+.|+.+++++
T Consensus 885 ~~~~~i~gl~f~~sqs~~~~~~A~~f~~G~~Li~~g~~~~~~~~~vf~~l~~ta~~~~~~~s~~Pd~~ka~~Aa~~iF~i 964 (1228)
T KOG0055|consen 885 FKRGLISGLGFGFSQSLLFFVYALSFWYGARLISNGEMTFEDVFRVFMALSFTAMALGQASSYAPDISKAKIAAGSIFEI 964 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998888888888899899999999999999999999
Q ss_pred hccCcccccccccCCCCCCCcccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCc
Q 001438 359 IERDTMSKASSKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLS 438 (1077)
Q Consensus 359 l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~ 438 (1077)
+++++.++..++.+...++.+|+|+++||+|+||++|+.++|+|+||+|++||.+|+||||||||||++.+|.|+|+|++
T Consensus 965 ~dr~~~i~~~~~~~~~~~~~~G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~ 1044 (1228)
T KOG0055|consen 965 LDRKPTIDPDSTSGGKLPNVKGDIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDA 1044 (1228)
T ss_pred hcCCCCCCCCCCCCCccccceeEEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCC
Confidence 99988766544344445667899999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEECCeeCCCCCHHHHhhheeEEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCC
Q 001438 439 GEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERG 518 (1077)
Q Consensus 439 G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g 518 (1077)
|.|.+||+|+++++++++|++||.|+|||.||++||||||.||.+..+.+|+.+|++++++|+||..||+||||.+||+|
T Consensus 1045 G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG 1124 (1228)
T KOG0055|consen 1045 GKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERG 1124 (1228)
T ss_pred CeEEECCcccccCCHHHHHHhcceeccCchhhcccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCccc
Confidence 99999999999999999999999999999999999999999996568999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhhcCEEEEEECCEEEE
Q 001438 519 IQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVK 598 (1077)
Q Consensus 519 ~~LSgGqkqri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~~d~i~~l~~G~i~~ 598 (1077)
.+||||||||||||||+++||+||||||+|||||.++|+.++++|++.+.|+|+|+|+||++++++||.|+|++||+|+|
T Consensus 1125 ~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~~gRT~IvIAHRLSTIqnaD~I~Vi~~G~VvE 1204 (1228)
T KOG0055|consen 1125 VQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAMEGRTTIVIAHRLSTIQNADVIAVLKNGKVVE 1204 (1228)
T ss_pred CcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhhcCCcEEEEecchhhhhcCCEEEEEECCEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecChhHHhcCCCchHHHHHHHHH
Q 001438 599 TGSHEELISNPNSAYAALVQLQE 621 (1077)
Q Consensus 599 ~g~~~~l~~~~~~~~~~~~~~~~ 621 (1077)
+|+|+||+++ +|.|.+|++.|.
T Consensus 1205 ~GtH~~L~~~-~G~Y~~Lv~~q~ 1226 (1228)
T KOG0055|consen 1205 QGTHDELLAK-RGIYFRLVQLQS 1226 (1228)
T ss_pred cccHHHHHhC-CCchHHHhhhcc
Confidence 9999999995 999999998764
No 11
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=1.3e-89 Score=824.39 Aligned_cols=550 Identities=31% Similarity=0.461 Sum_probs=505.2
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 58 MSLGSIGACVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSSWIEVSCWMYTGERQAAKMR 137 (1077)
Q Consensus 58 ~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr 137 (1077)
+++..++..+.+++.|+ ++..++|.+.+.. ..+.+...++.+++.++...++.+++.+...+.+.|+..++-
T Consensus 159 v~~~sl~l~i~~l~~p~---~~q~viD~Vl~~~-----~~~tL~vl~ig~~~~~l~~~~l~~lr~~~~~~~~~rld~~l~ 230 (709)
T COG2274 159 VLLASLLLQLLALATPL---FSQIVIDKVLPDA-----SRSTLTVLAIGLLLAALFEALLRLLRTYLIAHLGKRLDLELS 230 (709)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHhhhccC-----chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 34444555556666675 5677899876432 234455566667777888889999999999999999999999
Q ss_pred HHHHHHHHhCCchhhccCCChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 138 MAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFARVWQISLVTLSIVPLIAL 217 (1077)
Q Consensus 138 ~~~~~~ll~~~~~~f~~~~~~G~i~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~pl~~~ 217 (1077)
.++|+|++++|++||.+ +++|++++|+ +|.++|+++++..+...+.++.++++.+++|++++|.|++++++.+|+.++
T Consensus 231 ~~~~~hll~Lpl~~f~~-r~~Ge~~sR~-~el~~Ir~flt~~~l~~iiD~~~~~i~l~vm~~ys~~L~li~l~~~~l~~l 308 (709)
T COG2274 231 GRFFRHLLRLPLSYFEK-RSVGEIISRV-RELEQIREFLTGSILTLIIDLLFALIFLAVMFLYSWKLTLIVLAAIPLNVL 308 (709)
T ss_pred HHHHHHHHcCcHHHccC-CChhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998 4999999999 599999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 218 AGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGRKAGLAKGLGLGSMHCVLF 297 (1077)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (1077)
...++.+.+++..++..+..++.++.+.|+++|+++||+.+.|.++..+|++...+..+...+.............++..
T Consensus 309 ~~~~~~~~l~~~~~~~~~~~a~~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 388 (709)
T COG2274 309 ITLIFQPLLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKLALILNTIKSLLQQ 388 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999888888899999
Q ss_pred HHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhccCcccccccccCCCCCC
Q 001438 298 LSWSLLVWYVSVVVHKHISNGGESFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEMIERDTMSKASSKTGRKLDK 377 (1077)
Q Consensus 298 ~~~~~~~~~g~~~v~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~ 377 (1077)
++.++++|+|++++.+|.+|.|.++++.........|+..+...+..+++++.+.+|+.++++.+++.+... .....++
T Consensus 389 l~~v~iL~~G~~lVl~~~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E~~~~~-~~~~~~~ 467 (709)
T COG2274 389 LSSVLILWFGAILVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQEGDK-TLIHLPK 467 (709)
T ss_pred HHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccc-ccccccc
Confidence 999999999999999999999999988766666677899999999999999999999999999877643321 1123456
Q ss_pred CcccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHh
Q 001438 378 LSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLR 457 (1077)
Q Consensus 378 ~~~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r 457 (1077)
..|+|+++||+|+|+.++ +++|+|+||+|++||++||||+||||||||+|+|+|+|+|++|+|.+||.|+.+++.+++|
T Consensus 468 ~~g~I~~~nvsf~y~~~~-~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR 546 (709)
T COG2274 468 LQGEIEFENVSFRYGPDD-PPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLR 546 (709)
T ss_pred cCceEEEEEEEEEeCCCC-cchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHH
Confidence 779999999999998653 4799999999999999999999999999999999999999999999999999999999999
Q ss_pred hheeEEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhcc
Q 001438 458 QQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVK 537 (1077)
Q Consensus 458 ~~i~~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~ 537 (1077)
++||||+||+.+|+|||+|||+++.|+.++|++.+||+++++++||+.+|.||+|.+||+|.+||||||||++||||+++
T Consensus 547 ~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~ 626 (709)
T COG2274 547 RQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLS 626 (709)
T ss_pred hheeEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhhcCEEEEEECCEEEEecChhHHhcCCCchHHHHH
Q 001438 538 NPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAALV 617 (1077)
Q Consensus 538 ~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 617 (1077)
||+||||||||||||+++|+.|.+.|.+..+|+|+|+||||++++++||||+||++|+|+++|+|+|+++. ++.|++++
T Consensus 627 ~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~~adrIiVl~~Gkiv~~gs~~ell~~-~g~y~~l~ 705 (709)
T COG2274 627 KPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEELLAQ-GGLYARLY 705 (709)
T ss_pred CCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhhhccEEEEccCCceeccCCHHHHHHh-cChHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998 99999998
Q ss_pred HHH
Q 001438 618 QLQ 620 (1077)
Q Consensus 618 ~~~ 620 (1077)
+.|
T Consensus 706 ~~q 708 (709)
T COG2274 706 QQQ 708 (709)
T ss_pred hcc
Confidence 754
No 12
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=1.2e-84 Score=797.09 Aligned_cols=567 Identities=21% Similarity=0.259 Sum_probs=475.0
Q ss_pred HHHHHHhhchhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 43 LFKLFAFADFYDYILMSLGSIGACVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSSWIEV 122 (1077)
Q Consensus 43 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (1077)
+++++++.+++++ .+++++++.++..++.+..++++++++|.+.... . . ......+...++++.++..++.+++.
T Consensus 10 ~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~--~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (588)
T PRK11174 10 TRWLKQQSKPAKR-WLNLSILLGFLSGLLLIAQAWLLATILQALIIEN--I-P-REALLPPFILLILLFVLRALLAWLRE 84 (588)
T ss_pred hHHHHHHhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--C-c-hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666655443 3455666666666677777788899999753111 0 0 11122233344445556677788888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCchhhccCCChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 123 SCWMYTGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFARVW 202 (1077)
Q Consensus 123 ~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~i~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (1077)
+...+.+.++..++|.++|++++++|.++|++ .++|++++|+++|++.+++.+...+..++..++.+++.++++++++|
T Consensus 85 ~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~-~~~g~l~s~~~~dv~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 163 (588)
T PRK11174 85 RVGFKAGQHIRQQIRQQVLDKLQQLGPAWIQG-KPAGSWATLVLEQVEDMHDFYARYLPQMALAVLVPLLILIAVFPINW 163 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCchhhcc-CCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888999999999999999999999999998 48999999999999999999999999999999988888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 203 QISLVTLSIVPLIALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGRKAG 282 (1077)
Q Consensus 203 ~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 282 (1077)
.+++++++++|++.++...+.++.++..++.++..++..+.+.|.++|+++||+|++|+.+.++|++..++..+...+..
T Consensus 164 ~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 243 (588)
T PRK11174 164 AAGLILLGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESIRSASEDFRQRTMEVL 243 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988888888888888888889999999999999999999999999999999999999988888877777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHH---------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 001438 283 LAKGLGLGSMHCVLFLSWSLLVWYVSVVVHKHISNGGES---------FTTMLNVVIAGLSLGQAAPDITAFIRAKAAAY 353 (1077)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~g~~---------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ 353 (1077)
+..+...++..++..+..+++++++++.+. |.++.|.+ +.++.+......|+..+...+..+.+++++.+
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ 322 (588)
T PRK11174 244 RMAFLSSAVLEFFASISIALVAVYFGFSYL-GELNFGHYGTGVTLFAGFFVLILAPEFYQPLRDLGTFYHAKAQAVGAAE 322 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 766666555555555544444455554443 66776643 11112223345678888888889999999999
Q ss_pred HHHHHhccCcccccccccCCCCCCCcccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcc
Q 001438 354 PIFEMIERDTMSKASSKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERF 433 (1077)
Q Consensus 354 ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~ 433 (1077)
|+.++++.+++.+.. .....+.+..+.|+++||+|.|+++ +++|+|+||+|+|||++|||||||||||||+++|+|+
T Consensus 323 ri~~~l~~~~~~~~~-~~~~~~~~~~~~i~~~~vsf~~~~~--~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~ 399 (588)
T PRK11174 323 SLVTFLETPLAHPQQ-GEKELASNDPVTIEAEDLEILSPDG--KTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGF 399 (588)
T ss_pred HHHHHHcCCCcccCC-CccccCCCCCceEEEEeeEEeccCC--CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 999999875432111 1100111123579999999877643 4699999999999999999999999999999999999
Q ss_pred cCCCccEEEECCeeCCCCCHHHHhhheeEEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhh
Q 001438 434 YEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQ 513 (1077)
Q Consensus 434 ~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~ 513 (1077)
| |++|+|.+||+|+++++.+++|++|+||||+|++|++||+|||.+|.++.++++++++|+.++++++++.+|+|+||.
T Consensus 400 ~-p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~ 478 (588)
T PRK11174 400 L-PYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTP 478 (588)
T ss_pred C-CCCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccc
Confidence 9 999999999999999999999999999999999999999999999988899999999999999999999999999999
Q ss_pred hcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhhcCEEEEEEC
Q 001438 514 VGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQG 593 (1077)
Q Consensus 514 ~~~~g~~LSgGqkqri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~~d~i~~l~~ 593 (1077)
+||+|.+|||||||||+||||+++||+|||||||||+||+++++.+++.|++..+++|+|+||||+++++.||+|++|++
T Consensus 479 vge~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~~i~~aD~Iivl~~ 558 (588)
T PRK11174 479 IGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQWDQIWVMQD 558 (588)
T ss_pred cccCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecChHHHHhCCEEEEEeC
Confidence 99999999999999999999999999999999999999999999999999998889999999999999999999999999
Q ss_pred CEEEEecChhHHhcCCCchHHHHHHHHH
Q 001438 594 RKIVKTGSHEELISNPNSAYAALVQLQE 621 (1077)
Q Consensus 594 G~i~~~g~~~~l~~~~~~~~~~~~~~~~ 621 (1077)
|+|+|.|+|+||+++ ++.|++++..|.
T Consensus 559 G~i~e~G~~~eL~~~-~~~y~~l~~~q~ 585 (588)
T PRK11174 559 GQIVQQGDYAELSQA-GGLFATLLAHRQ 585 (588)
T ss_pred CeEeecCCHHHHHhc-chHHHHHHHHhh
Confidence 999999999999987 789999987765
No 13
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=1.8e-84 Score=846.04 Aligned_cols=571 Identities=29% Similarity=0.448 Sum_probs=486.6
Q ss_pred hHHHHHHhhchhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 42 SLFKLFAFADFYDYILMSLGSIGACVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSSWIE 121 (1077)
Q Consensus 42 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (1077)
.+.+++++..++.+ .++++++++++.+.+.|+++++++.+++.+... .........+++++++++++..++.+++
T Consensus 812 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~~~~~~~~~l~~~~~~i~~~~~~~l~ 886 (1466)
T PTZ00265 812 NLRIVYREIFSYKK-DVTIIALSILVAGGLYPVFALLYAKYVSTLFDF----ANLEANSNKYSLYILVIAIAMFISETLK 886 (1466)
T ss_pred hHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555444332 356777788888999999999999999975321 1111223456777777788888889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCchhhcc-CCChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 122 VSCWMYTGERQAAKMRMAYLRSMLNQDISLFDT-EASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFAR 200 (1077)
Q Consensus 122 ~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~-~~~~G~i~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (1077)
.++..+.++++..++|.++|+++++++++|||+ +.++|++++|+++|++.+++.+...+..++..++.+++++++++++
T Consensus 887 ~~~~~~~~~~~~~~lR~~lf~~ll~~~~~~fd~~~~~~G~l~srl~~Dv~~l~~~~~~~l~~~~~~i~~~i~~~~~~~~~ 966 (1466)
T PTZ00265 887 NYYNNVIGEKVEKTMKRRLFENILYQEISFFDQDKHAPGLLSAHINRDVHLLKTGLVNNIVIFTHFIVLFLVSMVMSFYF 966 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999985 2378999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-----------------HHHHHHHHHHHHHHHHhhHHHHHHhccHHH
Q 001438 201 VWQISLVTLSIVPLIALAGGMYAYVTIGLI-AR-----------------VRKSYVKAGEIAEEVIGNVRTVQAFAGEDK 262 (1077)
Q Consensus 201 ~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~-~~-----------------~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~ 262 (1077)
+|.+++++++++|++ ...+.+..+... ++ .++..++.+..++|.++|+++||+|+.|+.
T Consensus 967 ~~~l~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~ 1043 (1466)
T PTZ00265 967 CPIVAAVLTGTYFIF---MRVFAIRARLTANKDVEKKEINQPGTVFAYNSDDEIFKDPSFLIQEAFYNMNTVIIYGLEDY 1043 (1466)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhhccccccccchhhhHHHHHHHHHHHHHHHhcHHHHHHhcchHH
Confidence 999887765444333 233333222111 11 123355677899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHhHHHH
Q 001438 263 AVKVYKEALSNTYKYGRKAGLAKGLGLGSMHCVLFLSWSLLVWYVSVVVHKHISNGGESFTTMLNVVIAGLSLGQAAPDI 342 (1077)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~ 342 (1077)
+.++|.+..++..+...+...+.++..++..++..++.++++|+|++++..|.+++|.+++++.+++....++..+...+
T Consensus 1044 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~lv~~g~it~g~l~~~~~~~~~~~~~~~~l~~~~ 1123 (1466)
T PTZ00265 1044 FCNLIEKAIDYSNKGQKRKTLVNSMLWGFSQSAQLFINSFAYWFGSFLIRRGTILVDDFMKSLFTFLFTGSYAGKLMSLK 1123 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988888888888888888888888888999999999999999999998887666555445667777888
Q ss_pred HHHHHHHHHHHHHHHHhccCcccccccccCCC---CCCCcccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCC
Q 001438 343 TAFIRAKAAAYPIFEMIERDTMSKASSKTGRK---LDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGS 419 (1077)
Q Consensus 343 ~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~---~~~~~~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~ 419 (1077)
+.+.+++++++|++++++.+++.+..+..+.. +++..+.|+|+||+|+||++++.++|+|+||+|++|+++||||||
T Consensus 1124 ~~~~~a~~a~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~S 1203 (1466)
T PTZ00265 1124 GDSENAKLSFEKYYPLIIRKSNIDVRDNGGIRIKNKNDIKGKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGET 1203 (1466)
T ss_pred HHHHHHHHHHHHHHHHHCCCCcCCCCCCcccccccCCCCCceEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCC
Confidence 99999999999999999876543211111111 123457899999999998765567999999999999999999999
Q ss_pred CCcHHHHHHHHhcccCC------------------------------------------------------CccEEEECC
Q 001438 420 GSGKSTVISLIERFYEP------------------------------------------------------LSGEILLDG 445 (1077)
Q Consensus 420 GsGKSTl~~~l~g~~~~------------------------------------------------------~~G~i~~~g 445 (1077)
|||||||+++|+|+|+| ++|+|++||
T Consensus 1204 GsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG 1283 (1466)
T PTZ00265 1204 GSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDG 1283 (1466)
T ss_pred CCCHHHHHHHHHHhCCCccccccccccccccccccccccccccccccccccccccccccccccccccccCCCCCeEEECC
Confidence 99999999999999999 699999999
Q ss_pred eeCCCCCHHHHhhheeEEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHH
Q 001438 446 NNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQ 525 (1077)
Q Consensus 446 ~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq 525 (1077)
+|+++++.+++|++||||||||.||++||||||.+|.++++++++++||+.+++++||..||+||||.|||+|.+|||||
T Consensus 1284 ~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQ 1363 (1466)
T PTZ00265 1284 VDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQ 1363 (1466)
T ss_pred EEHHhCCHHHHHhhccEeCCCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHH
Confidence 99999999999999999999999999999999999998899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEccCchhHhhcCEEEEEEC----CEEE-E
Q 001438 526 KQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRNADVIAVVQG----RKIV-K 598 (1077)
Q Consensus 526 kqri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~~~~d~i~~l~~----G~i~-~ 598 (1077)
||||||||||+++|+|||||||||+||+++++.|++.|.+.. +++|+|+||||+++++.||+|+||++ |+++ |
T Consensus 1364 kQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRlsti~~aD~Ivvl~~~~~~G~iv~e 1443 (1466)
T PTZ00265 1364 KQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIASIKRSDKIVVFNNPDRTGSFVQA 1443 (1466)
T ss_pred HHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHHHHHhCCEEEEEeCCCCCCCEEEE
Confidence 999999999999999999999999999999999999999884 69999999999999999999999999 9954 8
Q ss_pred ecChhHHhcCCCchHHHHHHHH
Q 001438 599 TGSHEELISNPNSAYAALVQLQ 620 (1077)
Q Consensus 599 ~g~~~~l~~~~~~~~~~~~~~~ 620 (1077)
+|+|+||+++.++.|+++++.+
T Consensus 1444 ~Gth~eLl~~~~g~Y~~l~~~~ 1465 (1466)
T PTZ00265 1444 HGTHEELLSVQDGVYKKYVKLA 1465 (1466)
T ss_pred ecCHHHHHhcCCChHHHHHhhc
Confidence 9999999974489999998754
No 14
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=2.5e-83 Score=795.56 Aligned_cols=565 Identities=34% Similarity=0.505 Sum_probs=490.4
Q ss_pred hhhHHHHHHhhchhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccCCchhhhhHHHHHHHHHHHHHHHHHHHHH
Q 001438 40 SVSLFKLFAFADFYDYILMSLGSIGACVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSSW 119 (1077)
Q Consensus 40 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (1077)
.+.+++++++.++. +..+...+++.++..+.....++++++++|.+.... + ..........++++.++..++.+
T Consensus 146 ~~~~~~l~~~~~~~-~~~l~~~~~~~~~~~l~~~~~p~~~~~iid~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~ 219 (711)
T TIGR00958 146 ADLLFRLLGLSGRD-WPWLISAFVFLTLSSLGEMFIPFYTGRVIDTLGGDK-G----PPALASAIFFMCLLSIASSVSAG 219 (711)
T ss_pred hhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-C----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777766543 344455555556666666666778899999764211 1 11122223334445556667788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccCCChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 120 IEVSCWMYTGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFA 199 (1077)
Q Consensus 120 ~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~i~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (1077)
++.+++.+.+.++..++|.++|++++++|.++|++ .++|++++|+++|++.+++.+...+..++..+..+++.+++++.
T Consensus 220 l~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~f~~-~~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~~~i~~~~~l~~ 298 (711)
T TIGR00958 220 LRGGSFNYTMARINLRIREDLFRSLLRQDLGFFDE-NKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLW 298 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcC-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888889999999999999999999999999998 48999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Q 001438 200 RVWQISLVTLSIVPLIALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGR 279 (1077)
Q Consensus 200 ~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~ 279 (1077)
++|.+++++++.+|+..++..++.++.++..++.++..++..+.+.|.++|+++||+|++|+.+.++|++..++..+...
T Consensus 299 ~s~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~ 378 (711)
T TIGR00958 299 LSPRLTMVTLINLPLVFLAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNK 378 (711)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998888889999988888999999999999999999999999999999999999999999888877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh
Q 001438 280 KAGLAKGLGLGSMHCVLFLSWSLLVWYVSVVVHKHISNGGESFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEMI 359 (1077)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l 359 (1077)
+.....+.......++..+..++++++|++++..|.++.|.+++++.+......++..+...+..+++++.+.+|+.+++
T Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~il~~g~~lv~~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l 458 (711)
T TIGR00958 379 RKALAYAGYLWTTSVLGMLIQVLVLYYGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYL 458 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 77776666655555666666777888999999999999999998888888888899999999999999999999999999
Q ss_pred ccCcccccccccCCCCCCCcccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCcc
Q 001438 360 ERDTMSKASSKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSG 439 (1077)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G 439 (1077)
+.+++.+... ...+.+..+.|+++||+|+||+++++++|+|+||+|+|||+++||||||||||||+++|+|+|+|++|
T Consensus 459 ~~~~~~~~~~--~~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G 536 (711)
T TIGR00958 459 DRKPNIPLTG--TLAPLNLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGG 536 (711)
T ss_pred CCCCCCCCCC--CCCCCCCCCeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCC
Confidence 8765432211 11122345689999999999876556799999999999999999999999999999999999999999
Q ss_pred EEEECCeeCCCCCHHHHhhheeEEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCC
Q 001438 440 EILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGI 519 (1077)
Q Consensus 440 ~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~ 519 (1077)
+|.+||+|+++++.+++|++|+||||||++|++||||||.+|.++.+++++.++++.++++++++++|+|+||.+||+|.
T Consensus 537 ~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~ 616 (711)
T TIGR00958 537 QVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGS 616 (711)
T ss_pred EEEECCEEHHhcCHHHHHhhceEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCC
Confidence 99999999999999999999999999999999999999999988888999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhhcCEEEEEECCEEEEe
Q 001438 520 QLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKT 599 (1077)
Q Consensus 520 ~LSgGqkqri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~~d~i~~l~~G~i~~~ 599 (1077)
+|||||||||+||||++++|+|+|||||||+||+++++.+++ ....+++|+|+||||+++++.||+|++|++|+|+|+
T Consensus 617 ~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~--~~~~~~~TvIiItHrl~~i~~aD~IivL~~G~ive~ 694 (711)
T TIGR00958 617 QLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE--SRSRASRTVLLIAHRLSTVERADQILVLKKGSVVEM 694 (711)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH--hhccCCCeEEEEeccHHHHHhCCEEEEEECCEEEEe
Confidence 999999999999999999999999999999999999999988 333478999999999999999999999999999999
Q ss_pred cChhHHhcCCCchHHHH
Q 001438 600 GSHEELISNPNSAYAAL 616 (1077)
Q Consensus 600 g~~~~l~~~~~~~~~~~ 616 (1077)
|+|+||+++ ++.|+++
T Consensus 695 Gt~~eL~~~-~~~y~~l 710 (711)
T TIGR00958 695 GTHKQLMED-QGCYKHL 710 (711)
T ss_pred eCHHHHHhC-CCchHhc
Confidence 999999987 7788765
No 15
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=1.4e-82 Score=774.08 Aligned_cols=551 Identities=35% Similarity=0.529 Sum_probs=488.2
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 57 LMSLGSIGACVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSSWIEVSCWMYTGERQAAKM 136 (1077)
Q Consensus 57 ~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 136 (1077)
.+.++.++..+..+.....+.+++.++|.+.. .......+...++++.++..++.++..+...+.+.+...++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l 87 (567)
T COG1132 15 LLLLAILLLLLSALLSLLLPLLIGRIIDALLA-------DLGELLELLLLLLLLALLGGVLRALQSYLGSRLGQKIVADL 87 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444445555555556677888887641 11222333444445555666777777777778889999999
Q ss_pred HHHHHHHHHhCCchhhccCCChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 137 RMAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFARVWQISLVTLSIVPLIA 216 (1077)
Q Consensus 137 r~~~~~~ll~~~~~~f~~~~~~G~i~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~pl~~ 216 (1077)
|.++++++++.|+.+|++. ++|++++|+++|++.++..+......+...+..+++.+++++..+|.++++.++..|++.
T Consensus 88 r~~~~~~l~~~~~~~~~~~-~~g~l~~~~t~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~ 166 (567)
T COG1132 88 RRDLFEKLLRLPLSFFDKA-KSGDLISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLA 166 (567)
T ss_pred HHHHHHHHHhCCHHHhCcC-CcchHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 9999999999999999994 899999999999999999998886666667888888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 217 LAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGRKAGLAKGLGLGSMHCVL 296 (1077)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (1077)
+...++.++.++..++.++..++..+.+.|.++|+++||+|+.|+...+++.+..++..+...+.....+...+....+.
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (567)
T COG1132 167 LVLSLLARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLAPLMLLLS 246 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99888888778888999999999999999999999999999999999999999999988888888888888888888888
Q ss_pred HHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhccCcccccccccCCCCC
Q 001438 297 FLSWSLLVWYVSVVVHKHISNGGESFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEMIERDTMSKASSKTGRKLD 376 (1077)
Q Consensus 297 ~~~~~~~~~~g~~~v~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~ 376 (1077)
.+...+++++|.+.+..+.+++|.+.+++.+......|+..+...+..+.++..+++|++++++.++...+.... ..
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~---~~ 323 (567)
T COG1132 247 SLGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPEVEDPPDP---LK 323 (567)
T ss_pred HHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCCC---CC
Confidence 888899999999999999999999888877777778889998889999999999999999999986543321111 22
Q ss_pred CCcccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHH
Q 001438 377 KLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWL 456 (1077)
Q Consensus 377 ~~~~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~ 456 (1077)
...+.|+|+||+|+|++ ++++|+|+||++++||++|||||||||||||+++|+|+|+|++|+|.+||+|+++++.+++
T Consensus 324 ~~~~~I~f~~vsf~y~~--~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~l 401 (567)
T COG1132 324 DTIGSIEFENVSFSYPG--KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSL 401 (567)
T ss_pred CCCCeEEEEEEEEEcCC--CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHH
Confidence 34577999999999984 3469999999999999999999999999999999999999999999999999999999999
Q ss_pred hhheeEEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhc
Q 001438 457 RQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIV 536 (1077)
Q Consensus 457 r~~i~~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~ 536 (1077)
|++|+||||||+||++||+|||.+|+++++++++++||+.++++++++++|+|+||.+||+|.+||||||||++||||++
T Consensus 402 r~~I~~V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall 481 (567)
T COG1132 402 RKRIGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALL 481 (567)
T ss_pred HHhccEEcccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhhcCEEEEEECCEEEEecChhHHhcCCCchHHHH
Q 001438 537 KNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAAL 616 (1077)
Q Consensus 537 ~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~ 616 (1077)
+||+|||||||||+||+++|+.+++.+.++.++||+|+|+||++++++||+|+||++|+|+|.|+|+||+++ ++.|+++
T Consensus 482 ~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiIaHRlsti~~aD~IiVl~~G~i~e~G~h~eLl~~-~g~y~~l 560 (567)
T COG1132 482 RNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKNADRIIVLDNGRIVERGTHEELLAK-GGLYARL 560 (567)
T ss_pred cCCCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEEEeccHhHHHhCCEEEEEECCEEEEecCHHHHHHc-CCHHHHH
Confidence 999999999999999999999999999988889999999999999999999999999999999999999998 9999999
Q ss_pred HHHHH
Q 001438 617 VQLQE 621 (1077)
Q Consensus 617 ~~~~~ 621 (1077)
++.|.
T Consensus 561 ~~~~~ 565 (567)
T COG1132 561 YQAQG 565 (567)
T ss_pred HHHhh
Confidence 98764
No 16
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=2.2e-81 Score=779.76 Aligned_cols=543 Identities=26% Similarity=0.313 Sum_probs=476.8
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhcccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 63 IGACVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSSWIEVSCWMYTGERQAAKMRMAYLR 142 (1077)
Q Consensus 63 ~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~ 142 (1077)
+++++..+.....+++++.++|.+.+.. ...........++++.++..++.+++.+...+.+.++..++|..+|+
T Consensus 143 ~~~~~~~~~~l~~p~~~~~iid~v~~~~-----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 217 (686)
T TIGR03797 143 AMGLLGTLLGMLVPIATGILIGTAIPDA-----DRSLLVQIALALLAAAVGAAAFQLAQSLAVLRLETRMDASLQAAVWD 217 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcC-----ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444457788898764321 11223333444555556667888888888889999999999999999
Q ss_pred HHHhCCchhhccCCChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 143 SMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFARVWQISLVTLSIVPLIALAGGMY 222 (1077)
Q Consensus 143 ~ll~~~~~~f~~~~~~G~i~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~pl~~~~~~~~ 222 (1077)
++++.|+++|++ .++|++++|++ |++.+++.+...+...+..+...++.++++++++|.+++++++++|+.+++..++
T Consensus 218 ~ll~~~~~~~~~-~~~g~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~ 295 (686)
T TIGR03797 218 RLLRLPVSFFRQ-YSTGDLASRAM-GISQIRRILSGSTLTTLLSGIFALLNLGLMFYYSWKLALVAVALALVAIAVTLVL 295 (686)
T ss_pred HHHcCCHHHHCC-CChhHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998 59999999997 8999999998888888888877788888899999999999999999888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 223 AYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGRKAGLAKGLGLGSMHCVLFLSWSL 302 (1077)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (1077)
.+..++..++.++..++..+.+.|.++|+++||+++.|+.+.++|++..++..+...+.....++...+..++..+..++
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 375 (686)
T TIGR03797 296 GLLQVRKERRLLELSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLELSAQRIENLLTVFNAVLPVLTSAA 375 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888999999999999999999999999999999999999999988888888887777777777788888
Q ss_pred HHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhccCcccccccccCCCCCCCcccE
Q 001438 303 LVWYVSVVVHKHISNGGESFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEMIERDTMSKASSKTGRKLDKLSGHI 382 (1077)
Q Consensus 303 ~~~~g~~~v~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i 382 (1077)
++++|++++.+|.+|+|.++++..+......|+..+...+..+++++++.+|+.++++.+++.+... ..+.+..+.|
T Consensus 376 il~~g~~lv~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~---~~~~~~~~~I 452 (686)
T TIGR03797 376 LFAAAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALPEVDEAK---TDPGKLSGAI 452 (686)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCc---CCCCCCCceE
Confidence 9999999999999999999888777777778899999999999999999999999998655422111 1112234689
Q ss_pred EEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhheeE
Q 001438 383 EFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGL 462 (1077)
Q Consensus 383 ~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 462 (1077)
+++||+|+|++. ++++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|.+||+|+++++.+++|++|||
T Consensus 453 ~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~ 531 (686)
T TIGR03797 453 EVDRVTFRYRPD-GPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGV 531 (686)
T ss_pred EEEEEEEEcCCC-CccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccEE
Confidence 999999999743 3579999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccCCCEE
Q 001438 463 VNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSIL 542 (1077)
Q Consensus 463 v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~p~il 542 (1077)
|||||++|++||+|||.++.+ .++++++++++.++++++++.+|+|+||.+||+|.+|||||||||+||||++++|+||
T Consensus 532 v~Q~~~lf~gTI~eNi~~~~~-~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p~iL 610 (686)
T TIGR03797 532 VLQNGRLMSGSIFENIAGGAP-LTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRIL 610 (686)
T ss_pred EccCCccCcccHHHHHhcCCC-CCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 999999999999999999988 8999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhhcCEEEEEECCEEEEecChhHHhcCCCchHHHHHHHH
Q 001438 543 LLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAALVQLQ 620 (1077)
Q Consensus 543 llDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 620 (1077)
|||||||+||+++++++.+.|++. ++|+|+||||+++++.||+|++|++|+|+|.|+|+|++++ ++.|+++++.|
T Consensus 611 iLDEpTS~LD~~te~~i~~~L~~~--~~T~IiItHr~~~i~~~D~Iivl~~G~iv~~G~~~~Ll~~-~~~y~~l~~~q 685 (686)
T TIGR03797 611 LFDEATSALDNRTQAIVSESLERL--KVTRIVIAHRLSTIRNADRIYVLDAGRVVQQGTYDELMAR-EGLFAQLARRQ 685 (686)
T ss_pred EEeCCccCCCHHHHHHHHHHHHHh--CCeEEEEecChHHHHcCCEEEEEECCEEEEECCHHHHHhC-CcHHHHHHHhc
Confidence 999999999999999999999886 6899999999999999999999999999999999999986 89999988643
No 17
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=1.5e-81 Score=785.05 Aligned_cols=541 Identities=24% Similarity=0.332 Sum_probs=475.7
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhcccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 63 IGACVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSSWIEVSCWMYTGERQAAKMRMAYLR 142 (1077)
Q Consensus 63 ~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~ 142 (1077)
++..+.+++.| ++++.++|.+.... ...........++++.++..++.+++.+.....+.++..++|.++|+
T Consensus 164 ~~~~~~~l~~p---~~~~~iid~v~~~~-----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 235 (710)
T TIGR03796 164 LLLVLPGLVIP---AFSQIFVDEILVQG-----RQDWLRPLLLGMGLTALLQGVLTWLQLYYLRRLQIKLAVGMSARFLW 235 (710)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHhhcC-----ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444 56788888764321 11112223344444556667788888888889999999999999999
Q ss_pred HHHhCCchhhccCCChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 143 SMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFARVWQISLVTLSIVPLIALAGGMY 222 (1077)
Q Consensus 143 ~ll~~~~~~f~~~~~~G~i~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~pl~~~~~~~~ 222 (1077)
++++.|+++|++ .++|++++|+++| +.+++++...+...+..+..+++.++++++++|.+++++++.+|+.+++..++
T Consensus 236 ~ll~l~~~~~~~-~~~g~~~~r~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~ 313 (710)
T TIGR03796 236 HILRLPVRFFAQ-RHAGDIASRVQLN-DQVAEFLSGQLATTALDAVMLVFYALLMLLYDPVLTLIGIAFAAINVLALQLV 313 (710)
T ss_pred HHHcCCHHHHcC-CcccHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998 5999999999988 78999999889999999999999999999999999999999999998888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 223 AYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGRKAGLAKGLGLGSMHCVLFLSWSL 302 (1077)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (1077)
.+...+..++.++..++..+.+.|.++|+++||++++|+.+.++|.+...+..+...+.....++...+..++..+..++
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 393 (710)
T TIGR03796 314 SRRRVDANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQQELGVLTQILGVLPTLLTSLNSAL 393 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888899999999999999999999999999999999999998888888888887777777777788888
Q ss_pred HHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhccCcccccccc---c-CCCC-CC
Q 001438 303 LVWYVSVVVHKHISNGGESFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEMIERDTMSKASSK---T-GRKL-DK 377 (1077)
Q Consensus 303 ~~~~g~~~v~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~---~-~~~~-~~ 377 (1077)
++++|++++..|.+|+|.++++..+......|+..+...+..+++++.+.+|+.++++.+++.+.... . .... ++
T Consensus 394 il~~g~~~v~~g~lt~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~~~~~~~~~~~~~~ 473 (710)
T TIGR03796 394 ILVVGGLRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVDPLLEEEEAPAAGSEPSPR 473 (710)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccccccccccccCCC
Confidence 99999999999999999999887777777789999999999999999999999999987654322110 0 0111 23
Q ss_pred CcccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHh
Q 001438 378 LSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLR 457 (1077)
Q Consensus 378 ~~~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r 457 (1077)
..+.|+++||+|+|++. ++++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|.+||+|+++++.+++|
T Consensus 474 ~~~~I~~~~vsf~y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr 552 (710)
T TIGR03796 474 LSGYVELRNITFGYSPL-EPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLA 552 (710)
T ss_pred CCCeEEEEEEEEecCCC-CCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHH
Confidence 35689999999999854 35699999999999999999999999999999999999999999999999999999999999
Q ss_pred hheeEEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhcc
Q 001438 458 QQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVK 537 (1077)
Q Consensus 458 ~~i~~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~ 537 (1077)
++|+||||+|++|++||+|||.++.++.++++++++++.+++++++..+|+|+||.+||+|.+|||||||||+||||+++
T Consensus 553 ~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~ 632 (710)
T TIGR03796 553 NSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVR 632 (710)
T ss_pred hheeEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhh
Confidence 99999999999999999999999988889999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhhcCEEEEEECCEEEEecChhHHhcCCCchHHHHH
Q 001438 538 NPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAALV 617 (1077)
Q Consensus 538 ~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 617 (1077)
+|+|||||||||+||+++++.+.+.|++ .++|+|+||||+++++.||+|++|++|+|++.|+|+||+++ ++.|++++
T Consensus 633 ~p~iliLDEptS~LD~~te~~i~~~l~~--~~~T~IiitHrl~~i~~~D~Iivl~~G~i~~~G~~~~Ll~~-~~~y~~l~ 709 (710)
T TIGR03796 633 NPSILILDEATSALDPETEKIIDDNLRR--RGCTCIIVAHRLSTIRDCDEIIVLERGKVVQRGTHEELWAV-GGAYARLI 709 (710)
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHh--cCCEEEEEecCHHHHHhCCEEEEEeCCEEEEecCHHHHHHc-CCcHHHHh
Confidence 9999999999999999999999999986 58999999999999999999999999999999999999986 78888875
No 18
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=1.7e-81 Score=783.35 Aligned_cols=565 Identities=25% Similarity=0.332 Sum_probs=484.5
Q ss_pred hhHHHHHHhhchhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccCCchhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 001438 41 VSLFKLFAFADFYDYILMSLGSIGACVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSSWI 120 (1077)
Q Consensus 41 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (1077)
..+.+++.+.++.++. +...++++++..++....+++++.++|.+.+.. ...........++++.++..++.++
T Consensus 142 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~p~~~~~iiD~v~~~~-----~~~~l~~~~~~~~~~~~~~~~~~~~ 215 (708)
T TIGR01193 142 NSLLKFIPLITRQKKL-IVNIVIAAIIVTLISIAGSYYLQKIIDTYIPHK-----MMGTLGIISIGLIIAYIIQQILSYI 215 (708)
T ss_pred chHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC-----ChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555443332 233333333334444444567888999764321 1122223333344445556678888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccCCChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 121 EVSCWMYTGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFAR 200 (1077)
Q Consensus 121 ~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~i~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (1077)
+.++..+.+.++..++|.++|++++++|+.+|++ .++|++++|++ |++.+++.+...+...+..+..+++.+++++++
T Consensus 216 ~~~~~~~~~~~~~~~l~~~~~~~ll~l~~~~f~~-~~~G~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 293 (708)
T TIGR01193 216 QIFLLNVLGQRLSIDIILSYIKHLFELPMSFFST-RRTGEIVSRFT-DASSIIDALASTILSLFLDMWILVIVGLFLVRQ 293 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCC-CchhHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888889999999999999999999999999998 59999999997 999999999888888888888888888889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHH
Q 001438 201 VWQISLVTLSIVPLIALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGRK 280 (1077)
Q Consensus 201 ~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~ 280 (1077)
+|.+++++++.+|+++++..++.+..++..++.++..++..+.+.|.++|+++||+||+|+.+.+++++...+..+...+
T Consensus 294 ~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~ 373 (708)
T TIGR01193 294 NMLLFLLSLLSIPVYAVIIILFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFK 373 (708)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhc
Q 001438 281 AGLAKGLGLGSMHCVLFLSWSLLVWYVSVVVHKHISNGGESFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEMIE 360 (1077)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~ 360 (1077)
.....+....+..++..+..++++++|++++..|.+|+|.++++..+......|+..+...+..+++++++.+|+.++++
T Consensus 374 ~~~~~~~~~~~~~~~~~~~~i~il~~g~~lv~~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~ 453 (708)
T TIGR01193 374 YQKADQGQQAIKAVTKLILNVVILWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYL 453 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 87777776666666666777888999999999999999999988777777778999999999999999999999999998
Q ss_pred cCcccccccccCCCCCCCcccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccE
Q 001438 361 RDTMSKASSKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGE 440 (1077)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~ 440 (1077)
.+++.+... .....++..+.|+++||+|+|+++ +++|+|+||+|++||++||+||||||||||+++|+|+|+|++|+
T Consensus 454 ~~~e~~~~~-~~~~~~~~~~~I~~~~vsf~y~~~--~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~ 530 (708)
T TIGR01193 454 VDSEFINKK-KRTELNNLNGDIVINDVSYSYGYG--SNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGE 530 (708)
T ss_pred CCCcccccc-cccCCCCCCCcEEEEEEEEEcCCC--CcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcE
Confidence 765432211 101123345689999999999743 46999999999999999999999999999999999999999999
Q ss_pred EEECCeeCCCCCHHHHhhheeEEccCCCcccccHHHHHhcC-CCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCC
Q 001438 441 ILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYG-KDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGI 519 (1077)
Q Consensus 441 i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~~-~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~ 519 (1077)
|++||+|+++++.+++|++||||||+|++|++||+|||.++ .++.+++++.++++.+++++++..+|+|+||.+||+|.
T Consensus 531 I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~ 610 (708)
T TIGR01193 531 ILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGS 610 (708)
T ss_pred EEECCEEHHHcCHHHHHHheEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCC
Confidence 99999999999999999999999999999999999999998 46788999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhhcCEEEEEECCEEEEe
Q 001438 520 QLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKT 599 (1077)
Q Consensus 520 ~LSgGqkqri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~~d~i~~l~~G~i~~~ 599 (1077)
+|||||||||+||||++++|+|||||||||+||+++++.+.+.|++. +++|+|+||||+++++.||+|++|++|++++.
T Consensus 611 ~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~-~~~T~IiitHr~~~~~~~D~i~~l~~G~i~~~ 689 (708)
T TIGR01193 611 SISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL-QDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQ 689 (708)
T ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh-cCCEEEEEecchHHHHcCCEEEEEECCEEEEE
Confidence 99999999999999999999999999999999999999999999875 68999999999999999999999999999999
Q ss_pred cChhHHhcCCCchHHHHHH
Q 001438 600 GSHEELISNPNSAYAALVQ 618 (1077)
Q Consensus 600 g~~~~l~~~~~~~~~~~~~ 618 (1077)
|+|+|++++ ++.|+++++
T Consensus 690 G~~~~L~~~-~~~y~~l~~ 707 (708)
T TIGR01193 690 GSHDELLDR-NGFYASLIH 707 (708)
T ss_pred CCHHHHHhc-CCcHHHHhh
Confidence 999999987 788988763
No 19
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=2.8e-80 Score=751.95 Aligned_cols=565 Identities=22% Similarity=0.276 Sum_probs=474.2
Q ss_pred HHHHhhchhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 45 KLFAFADFYDYILMSLGSIGACVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSSWIEVSC 124 (1077)
Q Consensus 45 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (1077)
+++++.+++++ .+.+++++.++..+.....+.++++++|...... ...............+++++++..++.++..++
T Consensus 6 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~id~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (574)
T PRK11160 6 PFLKLYKRHWF-MLSLGILLAIVTLLASIGLLTLSGWFLSASAVAG-LAGLYSFNYMLPAAGVRGAAIGRTAGRYGERLV 83 (574)
T ss_pred HHHHHHhhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccchhhHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444443332 3334444444444444455567889998643111 000000000111222334455666778888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCchhhccCCChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 125 WMYTGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFARVWQI 204 (1077)
Q Consensus 125 ~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~i~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 204 (1077)
..+.+.++..++|.++|++++++|+.+|++ .++|++++|+++|++.+++++...++.++..++.+++.++++++++|.+
T Consensus 84 ~~~~~~~~~~~lR~~l~~~l~~~~~~~~~~-~~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l 162 (574)
T PRK11160 84 SHDATFRVLTHLRVFTFSKLLPLSPAGLAR-YRQGDLLNRLVADVDTLDHLYLRLISPLVAALVVILVLTIGLSFFDLTL 162 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccChHhhcc-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888999999999999999999999999998 4899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 205 SLVTLSIVPLIALA-GGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGRKAGL 283 (1077)
Q Consensus 205 ~l~~l~~~pl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 283 (1077)
++++++++|+++++ ..++.+..++..++.++..++..+.+.|.++|+++||+|+.|+.+.++|++..++..+...+..+
T Consensus 163 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 242 (574)
T PRK11160 163 ALTLGGILLLLLLLLPLLFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQLEQTEQQWLAAQRRQAN 242 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99888888876654 35567777788888888999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHH-HHHHHHHhHHHHHHHHHHHHHHHHHHHHhccC
Q 001438 284 AKGLGLGSMHCVLFLSWSLLVWYVSVVVHKHISNGGESFTTMLNVVI-AGLSLGQAAPDITAFIRAKAAAYPIFEMIERD 362 (1077)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~g~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~ 362 (1077)
..+...++..++..+..++++++|++++ .|.++.|.+++++.+... ...++..+...+..+++++++.+|+.++++.+
T Consensus 243 ~~~~~~~~~~~~~~~~~~~i~~~g~~~~-~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~ll~~~ 321 (574)
T PRK11160 243 LTGLSQALMILANGLTVVLMLWLAAGGV-GGNAQPGALIALFVFAALAAFEALMPVAGAFQHLGQVIASARRINEITEQK 321 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 8888888777777777788889998884 788899988776544333 23466667778888999999999999999876
Q ss_pred cccccccccCCCCCCCcccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEE
Q 001438 363 TMSKASSKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEIL 442 (1077)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~ 442 (1077)
++.+.... ....+..+.|+++||+|+|++. ++++|+|+||++++||+++|+||||||||||+++|+|+|+|++|+|.
T Consensus 322 ~~~~~~~~--~~~~~~~~~i~~~~v~f~y~~~-~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~ 398 (574)
T PRK11160 322 PEVTFPTT--STAAADQVSLTLNNVSFTYPDQ-PQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEIL 398 (574)
T ss_pred CCCCCCcc--cCCCCCCCeEEEEEEEEECCCC-CCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEE
Confidence 54321111 1112234679999999999753 24699999999999999999999999999999999999999999999
Q ss_pred ECCeeCCCCCHHHHhhheeEEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCC
Q 001438 443 LDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLS 522 (1077)
Q Consensus 443 ~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LS 522 (1077)
+||+|+++++.+++|++|+||||||++|++|++|||.++.++.+++++.++++.++++++++. |+|+||.+||+|.+||
T Consensus 399 i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~-p~GldT~vge~g~~LS 477 (574)
T PRK11160 399 LNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLED-DKGLNAWLGEGGRQLS 477 (574)
T ss_pred ECCEEhhhCCHHHHHhheeEEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcC-ccccCchhcCCCCCCC
Confidence 999999999999999999999999999999999999999888899999999999999999999 9999999999999999
Q ss_pred hHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhhcCEEEEEECCEEEEecCh
Q 001438 523 GGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSH 602 (1077)
Q Consensus 523 gGqkqri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~~d~i~~l~~G~i~~~g~~ 602 (1077)
||||||++||||++++|+|+|||||||+||+++++.+++.|.+..+++|+|+||||+++++.||+|++|++|+++|.|+|
T Consensus 478 gGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~~~tviiitHr~~~~~~~d~i~~l~~G~i~~~g~~ 557 (574)
T PRK11160 478 GGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQFDRICVMDNGQIIEQGTH 557 (574)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecChhHHHhCCEEEEEeCCeEEEeCCH
Confidence 99999999999999999999999999999999999999999998889999999999999999999999999999999999
Q ss_pred hHHhcCCCchHHHHHH
Q 001438 603 EELISNPNSAYAALVQ 618 (1077)
Q Consensus 603 ~~l~~~~~~~~~~~~~ 618 (1077)
+|++++ ++.|+++++
T Consensus 558 ~~l~~~-~g~y~~l~~ 572 (574)
T PRK11160 558 QELLAQ-QGRYYQLKQ 572 (574)
T ss_pred HHHHhc-CcHHHHHHh
Confidence 999987 899999875
No 20
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=7.3e-80 Score=767.07 Aligned_cols=535 Identities=26% Similarity=0.363 Sum_probs=470.7
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHhcccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 64 GACVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSSWIEVSCWMYTGERQAAKMRMAYLRS 143 (1077)
Q Consensus 64 ~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ 143 (1077)
++++..++....|++++.++|.+.... ...........++++.++..++.+++.+...+.+.++..++|..+|++
T Consensus 155 ~~~~~~l~~l~~p~~~~~iiD~~~~~~-----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 229 (694)
T TIGR03375 155 ASLLINLLALASPLFVMNVYDRVVPNQ-----AFETLWVLAIGVALAIVFDFVLKTLRSYFLDVAGKKADLILSAKLFER 229 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcC-----cHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444457788898754321 111222233334444555667888888888899999999999999999
Q ss_pred HHhCCchhhccCCChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 144 MLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFARVWQISLVTLSIVPLIALAGGMYA 223 (1077)
Q Consensus 144 ll~~~~~~f~~~~~~G~i~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~pl~~~~~~~~~ 223 (1077)
+++.|+.+ ++ .++|++++|+ +|++.+++.+...+...+..+..+++.++++++++|.++++.++.+|+++++..++.
T Consensus 230 ll~l~~~~-~~-~~~G~~~~r~-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~ 306 (694)
T TIGR03375 230 VLGLRMEA-RP-ASVGSFANQL-REFESVRDFFTSATLTALIDLPFALLFLLVIAIIGGPLVWVPLVAIPLILLPGLLLQ 306 (694)
T ss_pred HhCCCccc-CC-CChhHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998 55 4899999999 799999999988888888888888888888999999999999999999999989999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 224 YVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGRKAGLAKGLGLGSMHCVLFLSWSLL 303 (1077)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (1077)
+..++..++.++..++..+.+.|.++|+++||+|++|+.+.+++++..++..+...+..++.+....+..++..++.+++
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 386 (694)
T TIGR03375 307 RPLSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGLKSRFLSNLATNFAQFIQQLVSVAI 386 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988888888777777777888888
Q ss_pred HHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhccCcccccccccCCCCCCCcccEE
Q 001438 304 VWYVSVVVHKHISNGGESFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEMIERDTMSKASSKTGRKLDKLSGHIE 383 (1077)
Q Consensus 304 ~~~g~~~v~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~ 383 (1077)
+++|++++.+|.+|+|.+++++.+......|+..+...+..+.+++++.+|+.++++.+++.+... ......+..+.|+
T Consensus 387 l~~g~~~v~~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~-~~~~~~~~~~~I~ 465 (694)
T TIGR03375 387 VVVGVYLISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQLPVERPEGT-RFLHRPRLQGEIE 465 (694)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCC-CCCCCCCccceEE
Confidence 999999999999999999988877777788999999999999999999999999998765422111 1111122346899
Q ss_pred EEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhheeEE
Q 001438 384 FKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLV 463 (1077)
Q Consensus 384 ~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v 463 (1077)
++||+|+|++. ++++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|.+||+|+++++.+++|++|+||
T Consensus 466 ~~~vsf~Y~~~-~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i~~v 544 (694)
T TIGR03375 466 FRNVSFAYPGQ-ETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYV 544 (694)
T ss_pred EEEEEEEeCCC-CccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhccEEE
Confidence 99999999753 34699999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccCCCEEE
Q 001438 464 NQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILL 543 (1077)
Q Consensus 464 ~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~p~ill 543 (1077)
||+|++|++||+|||.++.++.+++++.++++.++++++++.+|+|+||.+||+|.+||||||||++||||++++|+|+|
T Consensus 545 ~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p~ili 624 (694)
T TIGR03375 545 PQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILL 624 (694)
T ss_pred CCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999999999999999988889999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhhcCEEEEEECCEEEEecChhHHhcC
Q 001438 544 LDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISN 608 (1077)
Q Consensus 544 lDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 608 (1077)
||||||+||+++++.+++.|.+..+++|+|+||||+++++.||+|++|++|+++|.|+|+||+++
T Consensus 625 LDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~~~~~D~iivl~~G~i~e~G~~~eLl~~ 689 (694)
T TIGR03375 625 LDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRIVADGPKDQVLEA 689 (694)
T ss_pred EeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEeCCEEEeeCCHHHHHHH
Confidence 99999999999999999999998889999999999999999999999999999999999999864
No 21
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.4e-79 Score=689.92 Aligned_cols=551 Identities=25% Similarity=0.337 Sum_probs=478.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhcccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 62 SIGACVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSSWIEVSCWMYTGERQAAKMRMAYL 141 (1077)
Q Consensus 62 ~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~ 141 (1077)
.++.++.+++...+.+++..+++.+.... .......+...++++.++..++.+.+.....+.+.++...+|..++
T Consensus 6 ~ll~~l~~i~~i~qa~llA~~l~~l~~~~-----~~~~l~~~~~~l~~~~~lRa~l~~~~~~~~~~aa~~~~~~LR~~~l 80 (559)
T COG4988 6 ALLAVLSGIAIIAQAALLADILTKLIEGQ-----LFQSLLPLLILLLIALVLRAFLAWLRERLGYRAAAKVRASLRQLVL 80 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555556666666653221 1233344555566666777788888888888899999999999999
Q ss_pred HHHHhCCchhhccCCChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 142 RSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFARVWQISLVTLSIVPLIALAGGM 221 (1077)
Q Consensus 142 ~~ll~~~~~~f~~~~~~G~i~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~pl~~~~~~~ 221 (1077)
+++.+.+..+-++ .++|+..+.++.-++.++.+++..+++++...+..+..++.++.++|.-+++.++++|++.+++.+
T Consensus 81 ~~l~~~gp~~~~~-~~~g~~atl~~egve~l~~Y~~ryLPq~~~~~ivp~~i~i~v~~~~w~aalIllit~PlIPlfMil 159 (559)
T COG4988 81 DKLAKLGPAFIAQ-KPAGSAATLALEGIEQLEPYYARYLPQMFLSAIVPLLILIAIFFFNWAAALILLITAPLIPLFMIL 159 (559)
T ss_pred HHHHhCChhhhcC-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999888 599999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 222 YAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGRKAGLAKGLGLGSMHCVLFLSWS 301 (1077)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (1077)
+++..++..++..+.+...+..+-+.++|+.|+|.|+..+...+++.+..++..+..++.-+..-+......++..++.+
T Consensus 160 vg~~a~~~s~~~~~~~~~ls~~FLD~LrGL~TLr~f~~~~~~~~~i~~~se~fR~~TM~vLriAflSs~vLeffa~lsiA 239 (559)
T COG4988 160 VGLAAKDASEKQFSALARLSGHFLDRLRGLETLRAFGRTEATEERIRKDSEDFRKATMSVLRIAFLSSAVLEFFAYLSIA 239 (559)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998888777666666677777777777
Q ss_pred HHHHHHHHHHHh-cccCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhccCcccccccccCCCCCCCcc
Q 001438 302 LLVWYVSVVVHK-HISNGGESFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEMIERDTMSKASSKTGRKLDKLSG 380 (1077)
Q Consensus 302 ~~~~~g~~~v~~-~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~~ 380 (1077)
++..+.+..... |.++....+.+++..-=...|+..+...++.-+.+.++.+.++.+++.++...+........+..+.
T Consensus 240 lvAv~~g~~ll~~G~ltl~~~l~~LiLAPEff~PlR~lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~~~~~~~~~~~~~ 319 (559)
T COG4988 240 LVAVYIGFRLLGEGDLTLFAGLFVLILAPEFFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPGSGEKAEVANEPPI 319 (559)
T ss_pred HHHHHHHHHHHccCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCCCccccccccCCCc
Confidence 776666665566 6777666555444333346788999999999999999999999999876543222111111122234
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhe
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 460 (1077)
+++++|++|.|++.+ ++++|+||++++|++++|||+||||||||+++|+|+++|++|+|.+||+++++++.+.||+++
T Consensus 320 ei~~~~l~~~y~~g~--~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i 397 (559)
T COG4988 320 EISLENLSFRYPDGK--PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQI 397 (559)
T ss_pred eeeecceEEecCCCC--cccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHe
Confidence 566679999998653 799999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccCCC
Q 001438 461 GLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPS 540 (1077)
Q Consensus 461 ~~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~p~ 540 (1077)
+||||+|++|++|+||||.+++++.+++++.++++.+++.+++.. |+|+||.+||+|.+|||||+||+++|||++++++
T Consensus 398 ~~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~-p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~ 476 (559)
T COG4988 398 SWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPK-PDGLDTVIGEGGAGLSGGQAQRLALARALLSPAS 476 (559)
T ss_pred eeeCCCCccccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcC-CCcccchhccCCCCCCHHHHHHHHHHHHhcCCCC
Confidence 999999999999999999999999999999999999999999999 9999999999999999999999999999999999
Q ss_pred EEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhhcCEEEEEECCEEEEecChhHHhcCCCchHHHHHHHH
Q 001438 541 ILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAALVQLQ 620 (1077)
Q Consensus 541 illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 620 (1077)
++|||||||+||.++|+.|.+.|.++.+++|+|+||||++.+++||+|+|||+|+++|.|+|++|.++ ++.|++++..|
T Consensus 477 l~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~itHrl~~~~~~D~I~vld~G~l~~~g~~~~L~~~-~~~y~~l~~~q 555 (559)
T COG4988 477 LLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAADADRIVVLDNGRLVEQGTHEELSEK-QGLYANLLKQQ 555 (559)
T ss_pred EEEecCCccCCCHhHHHHHHHHHHHHHhCCeEEEEEcChHHHhcCCEEEEecCCceeccCCHHHHhhc-CcHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999987 89999999876
Q ss_pred HH
Q 001438 621 EA 622 (1077)
Q Consensus 621 ~~ 622 (1077)
+.
T Consensus 556 ~~ 557 (559)
T COG4988 556 EG 557 (559)
T ss_pred hc
Confidence 53
No 22
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=4.4e-79 Score=747.71 Aligned_cols=547 Identities=31% Similarity=0.478 Sum_probs=475.3
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhcccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 63 IGACVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSSWIEVSCWMYTGERQAAKMRMAYLR 142 (1077)
Q Consensus 63 ~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~ 142 (1077)
++.++..+.....+.+++.++|...... .........+.+++++++..++.+++.++..+.+.++..++|..+++
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~id~~~~~~-----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~ 106 (582)
T PRK11176 32 VALILNAASDTFMLSLLKPLLDDGFGKA-----DRSVLKWMPLVVIGLMILRGITSFISSYCISWVSGKVVMTMRRRLFG 106 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccC-----chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333434444444556777887653211 01111112222333455566777777777788899999999999999
Q ss_pred HHHhCCchhhccCCChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 143 SMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFARVWQISLVTLSIVPLIALAGGMY 222 (1077)
Q Consensus 143 ~ll~~~~~~f~~~~~~G~i~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~pl~~~~~~~~ 222 (1077)
++++.|.++|++ .++|++++|+++|++.+++.+...+..++..++.+++.++++++++|.+++++++++|+.+++....
T Consensus 107 ~l~~~~~~~~~~-~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~~~~l~~~~~~~~ 185 (582)
T PRK11176 107 HMMGMPVSFFDK-QSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSLILIVIAPIVSIAIRVV 185 (582)
T ss_pred HHHcCCHHHhCC-CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998 4899999999999999999999999999999999999999999999999999999889888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 223 AYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGRKAGLAKGLGLGSMHCVLFLSWSL 302 (1077)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (1077)
.+..++..++.++..++....+.|.++|+++||+|+.|+.+.++|++..++..+...+..+..+.......++..+..++
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (582)
T PRK11176 186 SKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRQQGMKMVSASSISDPIIQLIASLALAF 265 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888999999999999999999999999999999999999999988888888777777777777777778
Q ss_pred HHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhccCcccccccccCCCCCCCcccE
Q 001438 303 LVWYVSVVVHKHISNGGESFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEMIERDTMSKASSKTGRKLDKLSGHI 382 (1077)
Q Consensus 303 ~~~~g~~~v~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i 382 (1077)
++++|++.+..|.+++|.+.+++.+......|+..+...+..+.+++.+.+|+.++++.+++.+.. ....++..+.|
T Consensus 266 i~~~g~~~~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~---~~~~~~~~~~i 342 (582)
T PRK11176 266 VLYAASFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDLEQEKDEG---KRVIERAKGDI 342 (582)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCC---CcCCCCCCCeE
Confidence 889999999999999999877777666677889998889999999999999999999765432211 11112234579
Q ss_pred EEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhheeE
Q 001438 383 EFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGL 462 (1077)
Q Consensus 383 ~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 462 (1077)
+++||+|+|+++ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+|+++++.+++|++|+|
T Consensus 343 ~~~~vsf~y~~~-~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~ 421 (582)
T PRK11176 343 EFRNVTFTYPGK-EVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVAL 421 (582)
T ss_pred EEEEEEEecCCC-CCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhceE
Confidence 999999999754 3579999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EccCCCcccccHHHHHhcCCCC-CCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccCCCE
Q 001438 463 VNQEPALFATTIRENILYGKDD-ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSI 541 (1077)
Q Consensus 463 v~Q~~~lf~~ti~~ni~~~~~~-~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~p~i 541 (1077)
|||||++|++|++|||.++.++ .++++++++++.++++++++++|+|+||.+||+|.+|||||||||+||||++++|+|
T Consensus 422 v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~i 501 (582)
T PRK11176 422 VSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPI 501 (582)
T ss_pred EccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCCCE
Confidence 9999999999999999998754 789999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhhcCEEEEEECCEEEEecChhHHhcCCCchHHHHHHHH
Q 001438 542 LLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAALVQLQ 620 (1077)
Q Consensus 542 lllDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 620 (1077)
+|||||||+||+++++.+.+.|.+..+++|+|+||||++.++.||+|++|++|+++|.|+|++++++ ++.|+++++.|
T Consensus 502 lilDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~~~~~~D~Ii~l~~g~i~e~g~~~~l~~~-~~~y~~l~~~~ 579 (582)
T PRK11176 502 LILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEILVVEDGEIVERGTHAELLAQ-NGVYAQLHKMQ 579 (582)
T ss_pred EEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEeCCHHHHHhC-CChHHHHHHHH
Confidence 9999999999999999999999998889999999999999999999999999999999999999987 78999998754
No 23
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=1.9e-78 Score=753.63 Aligned_cols=541 Identities=26% Similarity=0.386 Sum_probs=477.7
Q ss_pred HhHHHHHHHHHHHHHHHHhcccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 001438 69 GVSVPVFFIFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSSWIEVSCWMYTGERQAAKMRMAYLRSMLNQD 148 (1077)
Q Consensus 69 ~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~ 148 (1077)
.++....+++++.++|.+.... .........+.++++.++..++.+++.+.....+.++..++|.++|++++++|
T Consensus 152 ~ll~l~~p~~~~~iid~v~~~~-----~~~~l~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~l~~l~ 226 (694)
T TIGR01846 152 QLFALVTPLLFQVVIDKVLVHR-----GLSTLSVLALAMLAVAIFEPALGGLRTYLFAHLTSRIDVELGARLYRHLLGLP 226 (694)
T ss_pred HHHHHHHHHHHHHHHHHhhccC-----ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3333444457788898764311 11223333444555556677888888889999999999999999999999999
Q ss_pred chhhccCCChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 149 ISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFARVWQISLVTLSIVPLIALAGGMYAYVTIG 228 (1077)
Q Consensus 149 ~~~f~~~~~~G~i~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~pl~~~~~~~~~~~~~~ 228 (1077)
+++|++ .++|++++|+ +|++.+++++...+...+..+...++.++++++++|.+++++++++|+++++..++.+..++
T Consensus 227 ~~~f~~-~~~g~~~~rl-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~i~~~~~~~~~~ 304 (694)
T TIGR01846 227 LGYFES-RRVGDTVARV-RELEQIRNFLTGSALTVVLDLLFVVVFLAVMFFYSPTLTGVVIGSLVCYALLSVFVGPILRK 304 (694)
T ss_pred HHHcCC-CCHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998 5999999999 69999999998877777777777777788899999999999999999988888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 229 LIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGRKAGLAKGLGLGSMHCVLFLSWSLLVWYVS 308 (1077)
Q Consensus 229 ~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 308 (1077)
..++..+..++..+.+.|.++|+++||+||.|+.+.++|++..++..+...+.....+....+..++..+..++++++|+
T Consensus 305 ~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~ 384 (694)
T TIGR01846 305 RVEDKFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFRVTNLGNIAGQAIELIQKLTFAILLWFGA 384 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 88888888889999999999999999999999999999999999999988888888888777777777788888999999
Q ss_pred HHHHhcccCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhccCcccccccccCCCCCCCcccEEEEeEE
Q 001438 309 VVVHKHISNGGESFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEMIERDTMSKASSKTGRKLDKLSGHIEFKDVS 388 (1077)
Q Consensus 309 ~~v~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~ 388 (1077)
+++..|.+|+|.++++..+......|+..+...+..+++++.+.+|+.++++.+++.+.. .....+...+.|+++||+
T Consensus 385 ~lv~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~--~~~~~~~~~~~i~~~~vs 462 (694)
T TIGR01846 385 HLVIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEPRSA--GLAALPELRGAITFENIR 462 (694)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCC--CCCCCCCCCCeEEEEEEE
Confidence 999999999999988877777777899999999999999999999999999876543211 111122335689999999
Q ss_pred EEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhheeEEccCCC
Q 001438 389 FCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPA 468 (1077)
Q Consensus 389 ~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~ 468 (1077)
|+|++. ++++|+|+||+|++||+++|+|+||||||||+++|+|+|+|++|+|.+||+|+++++.+++|++|+||||+|+
T Consensus 463 f~y~~~-~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~ 541 (694)
T TIGR01846 463 FRYAPD-SPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENV 541 (694)
T ss_pred EEcCCC-CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHhCeEEccCCe
Confidence 999754 3469999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCcC
Q 001438 469 LFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEAT 548 (1077)
Q Consensus 469 lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~p~illlDEpt 548 (1077)
+|++|++|||.++.++.+++++.++|+.+++.++++.+|+|+||.+|++|.+||||||||++||||++++|+|+||||||
T Consensus 542 lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~~ililDEpt 621 (694)
T TIGR01846 542 LFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEAT 621 (694)
T ss_pred ehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCC
Confidence 99999999999998888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhhcCEEEEEECCEEEEecChhHHhcCCCchHHHHHHHH
Q 001438 549 SALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAALVQLQ 620 (1077)
Q Consensus 549 s~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 620 (1077)
|+||+++++.+.+.|++..+++|+|+||||++.++.||+|++|++|++++.|+|+|++++ ++.|+++++.|
T Consensus 622 s~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~ii~l~~G~i~~~g~~~~l~~~-~~~y~~l~~~~ 692 (694)
T TIGR01846 622 SALDYESEALIMRNMREICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHEELLAL-QGLYARLWQQQ 692 (694)
T ss_pred cCCCHHHHHHHHHHHHHHhCCCEEEEEeCChHHHHhCCEEEEEeCCEEEEeCCHHHHHHc-CChHHHHHHhh
Confidence 999999999999999998889999999999999999999999999999999999999987 79999998754
No 24
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=4.6e-78 Score=738.95 Aligned_cols=566 Identities=26% Similarity=0.350 Sum_probs=466.9
Q ss_pred HHHHHHhhchhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 43 LFKLFAFADFYDYILMSLGSIGACVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSSWIEV 122 (1077)
Q Consensus 43 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (1077)
+++++.+..++++ .+.+.+++.++..++.+..+++++.++|...... .. . ......+.+.++++.++..++.+++.
T Consensus 11 ~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~-~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (592)
T PRK10790 11 LKRLLAYGSPWRK-PLGLAVLMLWVAAAAEVSGPLLISYFIDNMVAKG-NL-P-LGLVAGLAAAYVGLQLLAAGLHYAQS 86 (592)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-Cc-c-hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444433332 2334444455555555666678889999754211 10 0 01111122223333445556677777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCchhhccCCChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 123 SCWMYTGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFARVW 202 (1077)
Q Consensus 123 ~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~i~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (1077)
+.....+.+...++|.++|+++++.|.++|++ .++|++++|+++|++.+++.+...+..++..+..+++.++++++++|
T Consensus 87 ~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~-~~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (592)
T PRK10790 87 LLFNRAAVGVVQQLRTDVMDAALRQPLSAFDT-QPVGQLISRVTNDTEVIRDLYVTVVATVLRSAALIGAMLVAMFSLDW 165 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCC-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888889999999999999999999999998 49999999999999999999999999999999888888888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 203 QISLVTLSIVPLIALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGRKAG 282 (1077)
Q Consensus 203 ~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 282 (1077)
.+++++++++|++++...+..+..++..++.++..++..+.+.|.++|+++||.|+.|+.+.+++.+..++..+...+..
T Consensus 166 ~l~li~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (592)
T PRK10790 166 RMALVAIMIFPAVLVVMVIYQRYSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSHYMARMQTL 245 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888888887777777777777777777888888899999999999999999999999999999888777777666
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcc
Q 001438 283 LAKGLG-LGSMHCVLFLSWSLLVWYVSVVVHKHISNGGESFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEMIER 361 (1077)
Q Consensus 283 ~~~~~~-~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~ 361 (1077)
...++. ..+..++..+...+++++++. +..|.+++|.+++++.+......|+..+...+..+.+++.+.+|+.++++.
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~ 324 (592)
T PRK10790 246 RLDGFLLRPLLSLFSALILCGLLMLFGF-SASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDG 324 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 655543 222223322222222233333 568899999988887777777888999999999999999999999999976
Q ss_pred CcccccccccCCCCCCCcccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEE
Q 001438 362 DTMSKASSKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441 (1077)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i 441 (1077)
+++... . ...+...+.|+++|++|+|+++ +++|+|+||++++||+++|+|+||||||||+++|+|+|+|++|+|
T Consensus 325 ~~~~~~-~---~~~~~~~~~i~~~~v~f~y~~~--~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I 398 (592)
T PRK10790 325 PRQQYG-N---DDRPLQSGRIDIDNVSFAYRDD--NLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEI 398 (592)
T ss_pred CCccCC-C---CccCCCCCeEEEEEEEEEeCCC--CceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceE
Confidence 543211 1 1112234679999999999743 469999999999999999999999999999999999999999999
Q ss_pred EECCeeCCCCCHHHHhhheeEEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCC
Q 001438 442 LLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQL 521 (1077)
Q Consensus 442 ~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~L 521 (1077)
.+||+|+++++.+++|++|+||||+|++|++|++|||.++. +.++++++++++.++++++++.+|+|+||.+||+|.+|
T Consensus 399 ~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~-~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~L 477 (592)
T PRK10790 399 RLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGR-DISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNL 477 (592)
T ss_pred EECCEEhhhCCHHHHHhheEEEccCCccccchHHHHHHhCC-CCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCC
Confidence 99999999999999999999999999999999999999997 67899999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhhcCEEEEEECCEEEEecC
Q 001438 522 SGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGS 601 (1077)
Q Consensus 522 SgGqkqri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~~d~i~~l~~G~i~~~g~ 601 (1077)
||||||||+||||++++|+|+|||||||+||+++++.+.+.|++..+++|+|+||||++.++.||+|++|++|++++.|+
T Consensus 478 SGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~~~l~~~D~ii~l~~G~i~~~G~ 557 (592)
T PRK10790 478 SVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGT 557 (592)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEEcC
Confidence 99999999999999999999999999999999999999999999888899999999999999999999999999999999
Q ss_pred hhHHhcCCCchHHHHHHHHHH
Q 001438 602 HEELISNPNSAYAALVQLQEA 622 (1077)
Q Consensus 602 ~~~l~~~~~~~~~~~~~~~~~ 622 (1077)
|+|++++ ++.|+++++.+..
T Consensus 558 ~~~L~~~-~~~y~~l~~~~~~ 577 (592)
T PRK10790 558 HQQLLAA-QGRYWQMYQLQLA 577 (592)
T ss_pred HHHHHhC-CCHHHHHHHHHhh
Confidence 9999987 7999999987643
No 25
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=100.00 E-value=9.7e-78 Score=735.31 Aligned_cols=553 Identities=31% Similarity=0.467 Sum_probs=490.6
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 57 LMSLGSIGACVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSSWIEVSCWMYTGERQAAKM 136 (1077)
Q Consensus 57 ~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 136 (1077)
.+++++++.++.+++.+..+++++.++|...... ...........++++.++..++.+++.+...+.+.++..++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-----~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l 89 (571)
T TIGR02203 15 GLVLAGVAMILVAATESTLAALLKPLLDDGFGGR-----DRSVLWWVPLVVIGLAVLRGICSFVSTYLLSWVSNKVVRDI 89 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC-----chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666666777777778888888643211 11222223334555566667778888888889999999999
Q ss_pred HHHHHHHHHhCCchhhccCCChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 137 RMAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFARVWQISLVTLSIVPLIA 216 (1077)
Q Consensus 137 r~~~~~~ll~~~~~~f~~~~~~G~i~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~pl~~ 216 (1077)
|..+++++++.|.+++++ .++|++++|+++|++.+++.+...+..++..+..+++.++++++++|.++++++++.|+.+
T Consensus 90 r~~l~~~~~~~~~~~~~~-~~~g~~~~~l~~di~~i~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~l~~i~l~~~~l~~ 168 (571)
T TIGR02203 90 RVRMFEKLLGLPVSFFDR-QPTGTLLSRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQLTLIVVVMLPVLS 168 (571)
T ss_pred HHHHHHHHHcCCHHHhCC-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 999999999999999998 5899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 217 LAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGRKAGLAKGLGLGSMHCVL 296 (1077)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (1077)
++..++.+..++..++.++..++..+.+.|.++|+++||.++.|+.+.+++++..++..+...+.....+....+..++.
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (571)
T TIGR02203 169 ILMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAGSISSPITQLIA 248 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99899999999999999999999999999999999999999999999999999999999988888888888777777777
Q ss_pred HHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhccCcccccccccCCCCC
Q 001438 297 FLSWSLLVWYVSVVVHKHISNGGESFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEMIERDTMSKASSKTGRKLD 376 (1077)
Q Consensus 297 ~~~~~~~~~~g~~~v~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~ 376 (1077)
.+..++++++|++++..|.+|+|.++++..++.....|+..+...+..+.+++++.+|+.++++.+++.+... ....
T Consensus 249 ~~~~~~~~~~g~~~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~---~~~~ 325 (571)
T TIGR02203 249 SLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDTGT---RAIE 325 (571)
T ss_pred HHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCC---CCCC
Confidence 7788888999999999999999999998888888888999999999999999999999999998654422111 1112
Q ss_pred CCcccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHH
Q 001438 377 KLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWL 456 (1077)
Q Consensus 377 ~~~~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~ 456 (1077)
+..+.|+++||+|+|++. +.++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.+||+++++++.+++
T Consensus 326 ~~~~~i~~~~v~f~y~~~-~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~ 404 (571)
T TIGR02203 326 RARGDVEFRNVTFRYPGR-DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASL 404 (571)
T ss_pred CCCCeEEEEEEEEEcCCC-CCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHH
Confidence 234679999999999754 3469999999999999999999999999999999999999999999999999999999999
Q ss_pred hhheeEEccCCCcccccHHHHHhcCCC-CCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHh
Q 001438 457 RQQIGLVNQEPALFATTIRENILYGKD-DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAI 535 (1077)
Q Consensus 457 r~~i~~v~Q~~~lf~~ti~~ni~~~~~-~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal 535 (1077)
|++|+||||+|++|++|++|||.++.+ +.+++++.++++.+++++++.++|+|+||.+|++|.+|||||||||+||||+
T Consensus 405 ~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARal 484 (571)
T TIGR02203 405 RRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARAL 484 (571)
T ss_pred HhhceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHH
Confidence 999999999999999999999999986 7899999999999999999999999999999999999999999999999999
Q ss_pred ccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhhcCEEEEEECCEEEEecChhHHhcCCCchHHH
Q 001438 536 VKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAA 615 (1077)
Q Consensus 536 ~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~ 615 (1077)
+++|+|+|||||||+||+++++.+.+.|++..+++|+|+||||++.++.||+|++|++|++++.|+|++++++ ++.|++
T Consensus 485 l~~~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~~~~~D~ii~l~~g~i~~~g~~~~l~~~-~~~~~~ 563 (571)
T TIGR02203 485 LKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHNELLAR-NGLYAQ 563 (571)
T ss_pred hcCCCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHHHHhCCEEEEEeCCEEEeeCCHHHHHHc-CCHHHH
Confidence 9999999999999999999999999999998889999999999999999999999999999999999999987 788888
Q ss_pred HHHHH
Q 001438 616 LVQLQ 620 (1077)
Q Consensus 616 ~~~~~ 620 (1077)
+++.+
T Consensus 564 ~~~~~ 568 (571)
T TIGR02203 564 LHNMQ 568 (571)
T ss_pred HHHHh
Confidence 77644
No 26
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=100.00 E-value=4.9e-77 Score=728.67 Aligned_cols=565 Identities=27% Similarity=0.376 Sum_probs=469.7
Q ss_pred HHHHHHhhchhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 43 LFKLFAFADFYDYILMSLGSIGACVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSSWIEV 122 (1077)
Q Consensus 43 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (1077)
+++++++.+++ +..+.+.+++.++..++.+..+++++.++|.+... .........++++.++..+..++..
T Consensus 7 ~~~l~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~iid~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (588)
T PRK13657 7 YARVLQYLGAE-KRLGILLAVANVLLAAATFAEPILFGRIIDAISGK--------GDIFPLLAAWAGFGLFNIIAGVLVA 77 (588)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--------ccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455444332 22333344444444445555556778889875321 0111111222222222233333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCchhhccCCChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 123 SCWMYTGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFARVW 202 (1077)
Q Consensus 123 ~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~i~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (1077)
....+...++..++|.++|+++++.|..+|++ .++|++++|+++|++.+.+.+...+..++..++.+++.+++++.++|
T Consensus 78 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~-~~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (588)
T PRK13657 78 RHADRLAHRRRLAVLTEYFERIIQLPLAWHSQ-RGSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLALFMNW 156 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHCc-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555566667779999999999999998 59999999999999999988887788888887777778888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 203 QISLVTLSIVPLIALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGRKAG 282 (1077)
Q Consensus 203 ~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 282 (1077)
.+++++++++|+.+++...+.+..++..++.++..++..+.+.|.++|+++||.|+.|+.+.+++.+..++..+...+..
T Consensus 157 ~l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (588)
T PRK13657 157 RLSLVLVVLGIVYTLITTLVMRKTKDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPVL 236 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998888888888888888888888888888999999999999999999999999999999999999888888877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhccC
Q 001438 283 LAKGLGLGSMHCVLFLSWSLLVWYVSVVVHKHISNGGESFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEMIERD 362 (1077)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~ 362 (1077)
...+....+..++..+..++++++|++++.+|.+|+|.+++++.+......|+..+...+..+.+++.+.+|+.++++.+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~ 316 (588)
T PRK13657 237 SWWALASVLNRAASTITMLAILVLGAALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAV 316 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 77777777667777777788889999999999999999988877777777888888888999999999999999998764
Q ss_pred cccccccccCCCCCCCcccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEE
Q 001438 363 TMSKASSKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEIL 442 (1077)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~ 442 (1077)
++.+... ......+.++.|+++||+|+|+++ +++|+|+||+++|||+++|+|+||||||||+++|+|+|+|++|+|.
T Consensus 317 ~~~~~~~-~~~~~~~~~~~I~~~~vsf~y~~~--~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~ 393 (588)
T PRK13657 317 PDVRDPP-GAIDLGRVKGAVEFDDVSFSYDNS--RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRIL 393 (588)
T ss_pred cccCCCC-CCCCcCCCCCeEEEEEEEEEeCCC--CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEE
Confidence 4322111 111112234579999999999743 3589999999999999999999999999999999999999999999
Q ss_pred ECCeeCCCCCHHHHhhheeEEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCC
Q 001438 443 LDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLS 522 (1077)
Q Consensus 443 ~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LS 522 (1077)
+||+++++++.+++|++|+||||+|++|++|++|||.++.++.+++++.++++.+++.+++..+|+|+||.+|++|.+||
T Consensus 394 i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LS 473 (588)
T PRK13657 394 IDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLS 473 (588)
T ss_pred ECCEEhhhCCHHHHHhheEEEecCcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCC
Confidence 99999999999999999999999999999999999999988888999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhhcCEEEEEECCEEEEecCh
Q 001438 523 GGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSH 602 (1077)
Q Consensus 523 gGqkqri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~~d~i~~l~~G~i~~~g~~ 602 (1077)
||||||++||||++++|+|+|||||||+||+++++.+.+.|++..+++|+|+||||++.++.||+|++|++|++++.|+|
T Consensus 474 gGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~~~~D~ii~l~~G~i~~~g~~ 553 (588)
T PRK13657 474 GGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSF 553 (588)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHHHhCCEEEEEECCEEEEeCCH
Confidence 99999999999999999999999999999999999999999988789999999999999999999999999999999999
Q ss_pred hHHhcCCCchHHHHHHHHH
Q 001438 603 EELISNPNSAYAALVQLQE 621 (1077)
Q Consensus 603 ~~l~~~~~~~~~~~~~~~~ 621 (1077)
++++++ ++.|.+++..+.
T Consensus 554 ~~l~~~-~~~y~~l~~~~~ 571 (588)
T PRK13657 554 DELVAR-GGRFAALLRAQG 571 (588)
T ss_pred HHHHHC-CChHHHHHHHhh
Confidence 999987 789999987654
No 27
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=100.00 E-value=8e-77 Score=722.52 Aligned_cols=565 Identities=26% Similarity=0.338 Sum_probs=473.8
Q ss_pred HHHHHHhhchhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 43 LFKLFAFADFYDYILMSLGSIGACVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSSWIEV 122 (1077)
Q Consensus 43 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (1077)
+++++++.++++ ..++++++++++..++.+..++++++++|.+... . . .....+.++++.++..+..++..
T Consensus 7 ~~~l~~~l~~~k-~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~---~-~----~~~~~~~~~~~~~~~~~~~~~~~ 77 (585)
T TIGR01192 7 YVRALSYLNVHK-NRVLLIVIANITLAAITIAEPILFGRIIDAISSK---S-D----VLPTLALWAGFGVFNTIAYVLVA 77 (585)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---c-c----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555554443 3344555666666667777778899999975421 0 0 01111112222223333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCchhhccCCChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 123 SCWMYTGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFARVW 202 (1077)
Q Consensus 123 ~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~i~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (1077)
......+.++..++|.++|++++++|+++|++ .++|++++|+++|++.+++.+...+..++..++.+++.+++++.++|
T Consensus 78 ~~~~~~~~~~~~~lr~~~~~~l~~l~~~~~~~-~~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 156 (585)
T TIGR01192 78 READRLAHGRRATLLTEAFGRIISMPLSWHQQ-RGTSNALHTLLRATETLFGLWLEFMRQHLATFVALFLLIPTAFAMDW 156 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCC-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555667779999999999999998 48999999999999999999988888888888888888888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 203 QISLVTLSIVPLIALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGRKAG 282 (1077)
Q Consensus 203 ~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 282 (1077)
.+++++++++|++.++...+.++.++..++.++..++..+.+.|.++|+++||+|+.|+.+.+++++..++..+...+..
T Consensus 157 ~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (585)
T TIGR01192 157 RLSIVLMVLGILYILIAKLVMQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPVL 236 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988888888888888888888888899999999999999999999999999999999988888777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhccC
Q 001438 283 LAKGLGLGSMHCVLFLSWSLLVWYVSVVVHKHISNGGESFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEMIERD 362 (1077)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~ 362 (1077)
...++...+..++..+..++++++|++++.+|.+++|.+++++.+......|+..+...+..+.+++.+.+|+.++++.+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~ 316 (585)
T TIGR01192 237 DWWALASGLNRMASTISMMCILVIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSV 316 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 77777766666666777778889999999999999999988777777777788888888999999999999999998765
Q ss_pred cccccccccCCCCCCCcccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEE
Q 001438 363 TMSKASSKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEIL 442 (1077)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~ 442 (1077)
++.++.. ......+..+.++++||+|+|+++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.
T Consensus 317 ~~~~~~~-~~~~~~~~~~~i~~~~v~~~y~~~--~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~ 393 (585)
T TIGR01192 317 FQREEPA-DAPELPNVKGAVEFRHITFEFANS--SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQIL 393 (585)
T ss_pred ccccCCc-cCCCCCCCCCeEEEEEEEEECCCC--CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEE
Confidence 4322111 101112234579999999999743 3589999999999999999999999999999999999999999999
Q ss_pred ECCeeCCCCCHHHHhhheeEEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCC
Q 001438 443 LDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLS 522 (1077)
Q Consensus 443 ~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LS 522 (1077)
+||+++++++.+++|++++||||+|++|++|++|||.++.++.+++++.++++.+++.+++..+|+|++|.+|++|.+||
T Consensus 394 ~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LS 473 (585)
T TIGR01192 394 IDGIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLS 473 (585)
T ss_pred ECCEEhhhCCHHHHHhheEEEccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCC
Confidence 99999999999999999999999999999999999999988788999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhhcCEEEEEECCEEEEecCh
Q 001438 523 GGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSH 602 (1077)
Q Consensus 523 gGqkqri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~~d~i~~l~~G~i~~~g~~ 602 (1077)
||||||++||||++++|+++|||||||+||+++++.+.+.|++..+++|+|+||||++.++.||+|++|++|++++.|+|
T Consensus 474 gGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~~~d~i~~l~~G~i~~~g~~ 553 (585)
T TIGR01192 474 GGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSF 553 (585)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHHHcCCEEEEEECCEEEEECCH
Confidence 99999999999999999999999999999999999999999988889999999999999999999999999999999999
Q ss_pred hHHhcCCCchHHHHHHHHH
Q 001438 603 EELISNPNSAYAALVQLQE 621 (1077)
Q Consensus 603 ~~l~~~~~~~~~~~~~~~~ 621 (1077)
+|++++ ++.|+++++.+.
T Consensus 554 ~~l~~~-~~~y~~l~~~~~ 571 (585)
T TIGR01192 554 QELIQK-DGRFYKLLRRSG 571 (585)
T ss_pred HHHHHC-CChHHHHHHhCc
Confidence 999987 889999987653
No 28
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=2.9e-77 Score=725.70 Aligned_cols=537 Identities=24% Similarity=0.344 Sum_probs=465.5
Q ss_pred HHHHHHHHHHHHhcccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhcc
Q 001438 75 FFIFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSSWIEVSCWMYTGERQAAKMRMAYLRSMLNQDISLFDT 154 (1077)
Q Consensus 75 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~ 154 (1077)
.+++++.++|.+.... . . ......+...++++.++..++.+++.+.....+.++..++|.++|++++++|+++|++
T Consensus 14 ~p~~~~~iid~~~~~~--~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~ 89 (569)
T PRK10789 14 PPKVVGIIVDGVTEQH--M-T-TGQILMWIGTMVLIAVVVYLLRYVWRVLLFGASYQLAVELREDFYRQLSRQHPEFYLR 89 (569)
T ss_pred HHHHHHHHHHHhccCC--c-c-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcC
Confidence 3357788888653211 0 0 1112223333444445556667777777778899999999999999999999999998
Q ss_pred CCChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 155 EASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIG-FARVWQISLVTLSIVPLIALAGGMYAYVTIGLIARV 233 (1077)
Q Consensus 155 ~~~~G~i~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~ 233 (1077)
.++|++++|+++|++.++..+...+..++..++.+++.++++ ++++|.+++++++++|++.++...+.+...+..++.
T Consensus 90 -~~~g~i~srl~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~ 168 (569)
T PRK10789 90 -HRTGDLMARATNDVDRVVFAAGEGVLTLVDSLVMGCAVLIVMSTQISWQLTLLALLPMPVMAIMIKRYGDQLHERFKLA 168 (569)
T ss_pred -CCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 489999999999999999888777777777766666665555 579999999999999999888888888888888888
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001438 234 RKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGRKAGLAKGLGLGSMHCVLFLSWSLLVWYVSVVVHK 313 (1077)
Q Consensus 234 ~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~ 313 (1077)
++..++..+.+.|.++|+++||+|++|+.+.++|.+..++..+...+.....+....+......++.++++++|++++.+
T Consensus 169 ~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~ 248 (569)
T PRK10789 169 QAAFSSLNDRTQESLTSIRMIKAFGLEDRQSALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAIGGGSWMVVN 248 (569)
T ss_pred HHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 88889999999999999999999999999999999999988888888888777776666666666777788899999999
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhccCcccccccccCCCCCCCcccEEEEeEEEEcCC
Q 001438 314 HISNGGESFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEMIERDTMSKASSKTGRKLDKLSGHIEFKDVSFCYPS 393 (1077)
Q Consensus 314 ~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~ 393 (1077)
|.+|+|.++++..+......|+..+...+..+.+++++.+|+.++++.+++.+.. ....++.++.|+++|++|+|+.
T Consensus 249 g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~ll~~~~~~~~~---~~~~~~~~~~I~~~~v~~~y~~ 325 (569)
T PRK10789 249 GSLTLGQLTSFVMYLGLMIWPMLALAWMFNIVERGSAAYSRIRAMLAEAPVVKDG---SEPVPEGRGELDVNIRQFTYPQ 325 (569)
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCC---CCCCCCCCCcEEEEEEEEECCC
Confidence 9999999988877777777888888889999999999999999999865432211 1111223467999999999975
Q ss_pred CCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhheeEEccCCCccccc
Q 001438 394 RPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATT 473 (1077)
Q Consensus 394 ~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~t 473 (1077)
. +.++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||+++++++.+++|++++|+||+|++|++|
T Consensus 326 ~-~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~t 404 (569)
T PRK10789 326 T-DHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDT 404 (569)
T ss_pred C-CCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCeecccc
Confidence 3 346899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCH
Q 001438 474 IRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDA 553 (1077)
Q Consensus 474 i~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~p~illlDEpts~lD~ 553 (1077)
++|||.++.++.++++++++++.+++.+++.++|+|++|.+|++|.+||||||||++||||++++|+|+|||||||+||+
T Consensus 405 i~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpts~LD~ 484 (569)
T PRK10789 405 VANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDG 484 (569)
T ss_pred HHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCH
Confidence 99999999888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEccCchhHhhcCEEEEEECCEEEEecChhHHhcCCCchHHHHHHHHH
Q 001438 554 ESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAALVQLQE 621 (1077)
Q Consensus 554 ~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~ 621 (1077)
++++.+.+.|++..+++|+|+||||++.++.||+|++|++|++++.|+|+|++++ ++.|+++++.|.
T Consensus 485 ~~~~~i~~~l~~~~~~~tii~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~-~~~y~~l~~~~~ 551 (569)
T PRK10789 485 RTEHQILHNLRQWGEGRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQLAQQ-SGWYRDMYRYQQ 551 (569)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEecchhHHHcCCEEEEEeCCEEEEecCHHHHHHc-CChHHHHHHHhh
Confidence 9999999999988889999999999999999999999999999999999999986 789999987764
No 29
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=100.00 E-value=1.3e-77 Score=725.83 Aligned_cols=511 Identities=23% Similarity=0.285 Sum_probs=433.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhcccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 60 LGSIGACVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSSWIEVSCWMYTGERQAAKMRMA 139 (1077)
Q Consensus 60 ~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~ 139 (1077)
+.+++.++..+.....++++++++|...... . ..........++++.++..++.++..++..+.+.++..++|.+
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~ 91 (529)
T TIGR02868 17 VAILLGALALGSAVALLGVSAWLISRAAEMP----P-VLYLSVAAVAVRAFGIGRAVFRYLERLVGHDAALRSLGRLRVR 91 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc----h-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444455567889998753210 0 0000001111222344556677777788888899999999999
Q ss_pred HHHHHHhCCchhhccCCChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 140 YLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFARVWQISLVTLSIVPLIALAG 219 (1077)
Q Consensus 140 ~~~~ll~~~~~~f~~~~~~G~i~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~pl~~~~~ 219 (1077)
+|++++++|.++|++ .++|++++|+++|++.+++.+...+..++..+..+++.++++++++|.+++++++.+|++.++.
T Consensus 92 ~~~~ll~~~~~~~~~-~~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~~~~~~~~~~ 170 (529)
T TIGR02868 92 VYDRLARLALAGRRR-FQTGDLLGRLGADVDALQDLYVRVIVPLVVALVVGSAAVAAIALLSVPAALVLAAGLLLAGFVA 170 (529)
T ss_pred HHHHhhccCcccccc-CChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 999999999999998 4899999999999999999999888999999988899999999999999999888878776665
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 220 GMYAY-VTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGRKAGLAKGLGLGSMHCVLFL 298 (1077)
Q Consensus 220 ~~~~~-~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (1077)
..+.+ ..++..++.++..++..+.+.|.++|+++||+|++|+.+.++|++..++..+...+...+.+...++..++..+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (529)
T TIGR02868 171 PLVSLRAARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEAADRELLAAERRAARATGLGAAAQLLAAGL 250 (529)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44443 34555666777788899999999999999999999999999999999999999888888888887777777777
Q ss_pred HHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhccCccccccccc-CCCCCC
Q 001438 299 SWSLLVWYVSVVVHKHISNGGESFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEMIERDTMSKASSKT-GRKLDK 377 (1077)
Q Consensus 299 ~~~~~~~~g~~~v~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~-~~~~~~ 377 (1077)
..++++++|++++..|.+++|.+.+++.+......++..+...+..+.+++++.+|+.++++.+++.+..... .....+
T Consensus 251 ~~~~~~~~g~~~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~ 330 (529)
T TIGR02868 251 AVLGALWAGGPAVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRAAAERIEEVTGAKGPRPEGVVPAAGALGL 330 (529)
T ss_pred HHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCCCCCCCCcccCC
Confidence 7788889999999999999999888777766677788888888899999999999999999875542211111 111122
Q ss_pred CcccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHh
Q 001438 378 LSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLR 457 (1077)
Q Consensus 378 ~~~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r 457 (1077)
..+.|+++||+|+|+++ +++|+|+||++++||+++||||||||||||+++|+|+|+|++|+|.+||+|++++ .+++|
T Consensus 331 ~~~~I~~~~vsf~Y~~~--~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~-~~~lr 407 (529)
T TIGR02868 331 GKPTLELRDLSFGYPGS--PPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSL-QDELR 407 (529)
T ss_pred CCceEEEEEEEEecCCC--CceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhH-HHHHH
Confidence 34579999999999753 3599999999999999999999999999999999999999999999999999999 99999
Q ss_pred hheeEEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhcc
Q 001438 458 QQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVK 537 (1077)
Q Consensus 458 ~~i~~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~ 537 (1077)
++|+||||+|++|++||+|||.+|.++.++++++++++.++++++++.+|+|+||.+||+|.+|||||||||+||||+++
T Consensus 408 ~~i~~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~ 487 (529)
T TIGR02868 408 RRISVFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLA 487 (529)
T ss_pred hheEEEccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999999998899999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCc
Q 001438 538 NPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRL 579 (1077)
Q Consensus 538 ~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~ 579 (1077)
+|+|||||||||+||+++++.|++.+.+..+++|+|+||||+
T Consensus 488 ~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItHrl 529 (529)
T TIGR02868 488 DAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVITHHL 529 (529)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 999999999999999999999999999888899999999995
No 30
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9.9e-78 Score=664.79 Aligned_cols=547 Identities=27% Similarity=0.351 Sum_probs=448.1
Q ss_pred HHHHhHHHHHHHHHHHHHHHHhcccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 66 CVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSSWIEVSCWMYTGERQAAKMRMAYLRSML 145 (1077)
Q Consensus 66 ~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll 145 (1077)
..+.......+.+++.++|........+ ............|.+..++..++.-++.+.+.+..+++..+.-.++|++.+
T Consensus 40 ~~aK~l~v~vp~~~~~~id~l~~~~~~~-a~~~~~~~~~~~y~iar~~s~~F~el~~~vfa~v~q~~iR~~~~~vf~~~~ 118 (591)
T KOG0057|consen 40 LGAKILNVQVPFIFKLIIDGLNDADGNP-AVLSTITALLAGYGIARLGSSVFNELRNFVFAKVAQRVIRDSSSDVFRHLM 118 (591)
T ss_pred HhhhHhheehHHHHHHHHhhhhhcccCc-chhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334555555557788888753111111 111222334556667778888999999999999999999999999999999
Q ss_pred hCCchhhccCCChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 146 NQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIG-FARVWQISLVTLSIVPLIALAGGMYAY 224 (1077)
Q Consensus 146 ~~~~~~f~~~~~~G~i~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~l~~l~~~pl~~~~~~~~~~ 224 (1077)
+++.++|-+ ..+|++.+.+..-...|.+.+...+..++..++.+....... .-+.+..+++++..+...+.+......
T Consensus 119 ~ld~~~~~~-~~tG~l~~~idRgsraI~~vl~~~V~~i~p~~~~i~~v~~~l~~~~Ga~~~li~~~~v~~Y~a~Ti~~t~ 197 (591)
T KOG0057|consen 119 SLDLSFFLS-RGTGALNRIIDRGSRAISFVLSAMVFNIIPTLFEIALVSGILYYKFGAAFALITLGTVGAYAAFTIVVTR 197 (591)
T ss_pred hhhHHhhcC-CCcchHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHhheeEEeehh
Confidence 999999988 589999999999999999888776666666655444433222 224555566655555555555555666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 225 VTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGRKAGLAKGLGLGSMHCVLFLSWSLLV 304 (1077)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (1077)
+..+..++..++.+.++..+.|++.|-.+||.||.|+++.++|.....+..+...+.....++....-..+.....+.+.
T Consensus 198 ~Rn~fR~~~N~Adn~as~~~~dsL~Nye~VKsfNnE~~Ea~~y~~~l~~~~~~~~~~~~sl~~lnfgQ~~iFsv~~~~im 277 (591)
T KOG0057|consen 198 WRNRFRKAMNNADNSASRRAYDSLINYEIVKSFNNEEYEASRYDGSLKTYERAGLKYSSSLAFLNFGQKAIFSVALTFIM 277 (591)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHhhhhHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 66667777788888888999999999999999999999999999999998888877766666554433333334445555
Q ss_pred HHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhccCcccccccccCCCCCCCcccEEE
Q 001438 305 WYVSVVVHKHISNGGESFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEMIERDTMSKASSKTGRKLDKLSGHIEF 384 (1077)
Q Consensus 305 ~~g~~~v~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~ 384 (1077)
+.+..-+.++.+|.|++........++..|+..+...+..+.++..-....+...+....+.+ ...+....++.|+|
T Consensus 278 ~l~~~gi~~~~mtvgdlv~~n~l~~qL~~~l~~Lg~vyr~~~q~l~Dm~~~~~l~~~~~~i~~---~~~~i~~~~~~I~F 354 (591)
T KOG0057|consen 278 VLGSNGIAAGKMTVGDLVMVNSLLFQLSLPLNFLGSVYRELRQALTDMRTLFILLEVDEDIQE---AALPIELFGGSIEF 354 (591)
T ss_pred HHHhhhhhhccccccchhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHhhhhhhhhhhh---ccCCcccCCCcEEE
Confidence 566666778889999987766667777888888888888888877777666655443222111 11122334577999
Q ss_pred EeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhheeEEc
Q 001438 385 KDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVN 464 (1077)
Q Consensus 385 ~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~ 464 (1077)
+||+|+|++ ++++|+++||+|++||++||||+|||||||++++|+|+++ ++|+|++||+|+++++++.+|+.|||||
T Consensus 355 ~dV~f~y~~--k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig~VP 431 (591)
T KOG0057|consen 355 DDVHFSYGP--KRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIGVVP 431 (591)
T ss_pred EeeEEEeCC--CCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhheeEeC
Confidence 999999974 4569999999999999999999999999999999999999 9999999999999999999999999999
Q ss_pred cCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccCCCEEEE
Q 001438 465 QEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLL 544 (1077)
Q Consensus 465 Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~p~illl 544 (1077)
||..||++||.+||.||++..+++++.++|+.++.+|.+.++|+||+|.+||+|..|||||||||+||||+++||+|+++
T Consensus 432 Qd~~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~ 511 (591)
T KOG0057|consen 432 QDSVLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLL 511 (591)
T ss_pred CcccccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhhcCEEEEEECCEEEEecChhHHhcCCCchHHHHHHHHH
Q 001438 545 DEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAALVQLQE 621 (1077)
Q Consensus 545 DEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~ 621 (1077)
|||||+||.++|+.+.+.+.+...+||+|+|.||++++++||+|+++++|++.|.|+|+||++ +.+.|++++..|.
T Consensus 512 DEaTS~LD~~TE~~i~~~i~~~~~~rTvI~IvH~l~ll~~~DkI~~l~nG~v~e~gth~ell~-~s~~~~~~w~~~~ 587 (591)
T KOG0057|consen 512 DEATSALDSETEREILDMIMDVMSGRTVIMIVHRLDLLKDFDKIIVLDNGTVKEYGTHSELLA-PSELYADLWTTQT 587 (591)
T ss_pred cCcccccchhhHHHHHHHHHHhcCCCeEEEEEecchhHhcCCEEEEEECCeeEEeccHHHHhh-hhhHHHHHhcccc
Confidence 999999999999999999999889999999999999999999999999999999999999999 5899999886653
No 31
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=100.00 E-value=1.2e-76 Score=725.86 Aligned_cols=555 Identities=35% Similarity=0.503 Sum_probs=474.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 59 SLGSIGACVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSSWIEVSCWMYTGERQAAKMRM 138 (1077)
Q Consensus 59 ~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~ 138 (1077)
.+.+++.++.+++....+++++.++|...... . .........+++++.++..++.+++.+.....+.++..++|.
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~ 95 (576)
T TIGR02204 21 LAALVALLITAAATLSLPYAVRLMIDHGFSKD----S-SGLLNRYFAFLLVVALVLALGTAARFYLVTWLGERVVADIRR 95 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhcccc----c-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555566667888888743211 1 111122223333334445566677777778889999999999
Q ss_pred HHHHHHHhCCchhhccCCChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 139 AYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFARVWQISLVTLSIVPLIALA 218 (1077)
Q Consensus 139 ~~~~~ll~~~~~~f~~~~~~G~i~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~pl~~~~ 218 (1077)
.+++++++.|.++|++ .+.|++++|+++|++.+++.+...+..++..+..+++.+++++.++|.+++++++.+|+.++.
T Consensus 96 ~l~~~l~~~~~~~~~~-~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~l~~~~ 174 (576)
T TIGR02204 96 AVFAHLISLSPSFFDK-NRSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPKLTSLVLLAVPLVLLP 174 (576)
T ss_pred HHHHHHHcCCHHHHcc-CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 9999999999999998 489999999999999999999888888888998899999999999999999988888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 219 GGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGRKAGLAKGLGLGSMHCVLFL 298 (1077)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (1077)
..++.+..++..+..++..++..+.+.|.++|+++||.|+.|+.+.+++++..++..+...+.....+....+..++..+
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (576)
T TIGR02204 175 ILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRIRTRALLTAIVIVLVFG 254 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888899999999999999999999999999999999999988887777777666665555555556
Q ss_pred HHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhccCcccccccccCCCCCCC
Q 001438 299 SWSLLVWYVSVVVHKHISNGGESFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEMIERDTMSKASSKTGRKLDKL 378 (1077)
Q Consensus 299 ~~~~~~~~g~~~v~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~ 378 (1077)
..++++++|++++..|.+++|.++++..+......|+..+...+..+.+++.+.+|+.++++.+++.+..........+.
T Consensus 255 ~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~ 334 (576)
T TIGR02204 255 AIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDIKAPAHPKTLPVPL 334 (576)
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCCCccCCcCC
Confidence 66777888999999999999998888777777788899999999999999999999999998654322111111111122
Q ss_pred cccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhh
Q 001438 379 SGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQ 458 (1077)
Q Consensus 379 ~~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~ 458 (1077)
.+.|+++||+|+|+++.++++|+|+||+++|||+++|+||||||||||+++|+|+++|++|+|.+||.++++++.+++|+
T Consensus 335 ~~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~ 414 (576)
T TIGR02204 335 RGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRA 414 (576)
T ss_pred CceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHH
Confidence 45799999999998643357999999999999999999999999999999999999999999999999999999999999
Q ss_pred heeEEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccC
Q 001438 459 QIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKN 538 (1077)
Q Consensus 459 ~i~~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~ 538 (1077)
+++|+||+|++|++|++|||.++.++.++++++++++.+++.++++.+|+|++|.+||+|.+||||||||++||||++++
T Consensus 415 ~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~ 494 (576)
T TIGR02204 415 RMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKD 494 (576)
T ss_pred hceEEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999887889999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhhcCEEEEEECCEEEEecChhHHhcCCCchHHHHHH
Q 001438 539 PSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAALVQ 618 (1077)
Q Consensus 539 p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~ 618 (1077)
|+++|||||||+||+++++.+.+.|++..+++|+|+||||++.++.||+|++|++|++++.|+|++++++ ++.|+++++
T Consensus 495 ~~ililDEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~~~~~d~vi~l~~g~~~~~g~~~~l~~~-~~~~~~l~~ 573 (576)
T TIGR02204 495 APILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGTHAELIAK-GGLYARLAR 573 (576)
T ss_pred CCeEEEeCcccccCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEeeecHHHHHHc-CChHHHHHh
Confidence 9999999999999999999999999998889999999999999999999999999999999999999886 888988876
Q ss_pred HH
Q 001438 619 LQ 620 (1077)
Q Consensus 619 ~~ 620 (1077)
.|
T Consensus 574 ~~ 575 (576)
T TIGR02204 574 LQ 575 (576)
T ss_pred hc
Confidence 43
No 32
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1e-79 Score=662.01 Aligned_cols=550 Identities=28% Similarity=0.359 Sum_probs=441.4
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHhcccCCchhhhh-HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 65 ACVHGVSVPVFFIFFGKLINIIGLAYLFPKTASH-KVAKYSLDFVYL--SVAILFSSWIEVSCWMYTGERQAAKMRMAYL 141 (1077)
Q Consensus 65 ~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~ 141 (1077)
.++.-+.....+.+.+++.|.+.. +..... .+..+....++- +-+..+++.++.++|....+-..+++-..+|
T Consensus 224 l~i~rli~~~~pi~~k~iv~~lta----p~~~~~~~~~~~v~L~flqg~gtgsG~~~nlRtfLWi~VqQyttR~ie~~lf 299 (790)
T KOG0056|consen 224 LIIGRLINVSLPILSKWIVDELTA----PDTFQYSLVFLYVFLKFLQGGGTGSGFLNNLRTFLWIPVQQYTTREIETELF 299 (790)
T ss_pred HHHHHHHhhhhHHhHHHHHHhhcC----cchhhHHHHHHHHHHHHHhcCCccccchhhhheeEEEEhhHhHHHHHHHHHH
Confidence 333344444555677888887642 211111 111111111111 2234577888889999999999999999999
Q ss_pred HHHHhCCchhhccCCChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q 001438 142 RSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIG-FARVWQISLVTLSIVPLIALAGG 220 (1077)
Q Consensus 142 ~~ll~~~~~~f~~~~~~G~i~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~l~~l~~~pl~~~~~~ 220 (1077)
+|+..++++|+-+ +.+||++.-+....+.+. ++...+.++...+.-+.++++-. ..++|+.++++++++.+......
T Consensus 300 rHlh~LSlrwHL~-rrtGeVLrvmdrGtssvt-ll~yvVF~i~PtllDl~va~vYF~~~Fn~wFgLIVfl~m~lY~~~Ti 377 (790)
T KOG0056|consen 300 RHLHNLSLRWHLN-RRTGEVLRVMDRGTSSVT-LLEYVVFQIGPTLLDLGVAMVYFFIKFNIWFGLIVFLMMLLYCYVTI 377 (790)
T ss_pred HHHHhhceeeeec-ccccceeehhccCcchhh-HHHHHHhhcccHHHHhhhhhhhhhhhHhHHHHHHHHHHHHHHhheee
Confidence 9999999999988 489999888877666555 43333444444444444444332 34689999888777766655554
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 221 MYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGRKAGLAKGLGLGSMHCVLFLSW 300 (1077)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (1077)
....+.-+..++....-.+......+++-+..|||-||+|+++.++|.+...++.+..+|...-..+....-..+..+..
T Consensus 378 ~iTeWRTk~rR~Mn~~~nesrAr~vDsllNFETVKyy~Ae~yEverYreAil~Yqk~E~ks~~sLnfLN~~Qn~Ii~lgl 457 (790)
T KOG0056|consen 378 KITEWRTKARRKMNNSWNESRARQVDSLLNFETVKYYNAEDYEVERYREAILKYQKQEWKSLASLNFLNIVQNGIIGLGL 457 (790)
T ss_pred eeehhhHHHHHHhhhhhhhhhhhhhhhhhcchhhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 44444444444444444444456779999999999999999999999999999888777754433333333233333333
Q ss_pred HHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhccCcccccccccCCCCCCCcc
Q 001438 301 SLLVWYVSVVVHKHISNGGESFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEMIERDTMSKASSKTGRKLDKLSG 380 (1077)
Q Consensus 301 ~~~~~~g~~~v~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~~ 380 (1077)
+....+.+|.+..+.+|+|+..-+..+++.+.+|+..+...+..+++..+-.++++++++++++..+.+ ..++....+|
T Consensus 458 l~gsll~aY~Vt~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nfiDmEnmfdllkee~eVvd~P-~a~pl~~~~G 536 (790)
T KOG0056|consen 458 LAGSLLCAYRVTEQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNFIDMENMFDLLKEEPEVVDLP-GAPPLKVTQG 536 (790)
T ss_pred hhhhheeeeeeeeccccccceehHHHHHHHHhCchHHHHHHHHHHHHhhhhHHHHHHHhhcCchhhcCC-CCCCccccCC
Confidence 333444556677888999997666667888889999999999999999999999999999877654322 2223344568
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhe
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 460 (1077)
.|+|+||+|.|++ ++++|+||||++.||+.+|+|||||+||||++++|.|+++.++|+|.+||+||++....++|++|
T Consensus 537 ~i~fsnvtF~Y~p--~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~I 614 (790)
T KOG0056|consen 537 KIEFSNVTFAYDP--GKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSI 614 (790)
T ss_pred eEEEEEeEEecCC--CCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhc
Confidence 9999999999974 56899999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccCCC
Q 001438 461 GLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPS 540 (1077)
Q Consensus 461 ~~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~p~ 540 (1077)
|.||||..|||+||..||.|+++.+++|++.+|++.++.||.|..+|+||+|.|||+|-.||||||||+||||+++++|.
T Consensus 615 GVVPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P~ 694 (790)
T KOG0056|consen 615 GVVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPS 694 (790)
T ss_pred CcccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhhcCEEEEEECCEEEEecChhHHhcCCCchHHHHHHHH
Q 001438 541 ILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAALVQLQ 620 (1077)
Q Consensus 541 illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 620 (1077)
|++|||+|||||..+|+.|+.++.++..++|.|+|+||++++-+||.|+|+++|+|+|.|+|+||+.+++|.|+++++.|
T Consensus 695 iIlLDEATSALDT~tER~IQaaL~rlca~RTtIVvAHRLSTivnAD~ILvi~~G~IvErG~HeeLl~rdgG~Ya~MWq~q 774 (790)
T KOG0056|consen 695 IILLDEATSALDTNTERAIQAALARLCANRTTIVVAHRLSTIVNADLILVISNGRIVERGRHEELLKRDGGAYADMWQAQ 774 (790)
T ss_pred EEEEcchhhhcCCccHHHHHHHHHHHhcCCceEEEeeeehheecccEEEEEeCCeEeecCcHHHHHhccCCcHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998899999999877
Q ss_pred HHh
Q 001438 621 EAA 623 (1077)
Q Consensus 621 ~~~ 623 (1077)
+..
T Consensus 775 qa~ 777 (790)
T KOG0056|consen 775 QAM 777 (790)
T ss_pred Hhc
Confidence 654
No 33
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=1.4e-76 Score=781.70 Aligned_cols=510 Identities=20% Similarity=0.271 Sum_probs=434.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccCCChhHHHHHHHhHHHHHHHHHHHHHHH
Q 001438 103 YSLDFVYLSVAILFSSWIEVSCWMYTGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGN 182 (1077)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~i~~r~~~D~~~i~~~~~~~~~~ 182 (1077)
+..+|++++++..++.++..+++.+.+.+...++|.++++++++.|++|||+ .++|+++||+++|++.+++.+...+..
T Consensus 1007 ~~~iy~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~-~~~G~ilnR~s~Di~~id~~l~~~~~~ 1085 (1522)
T TIGR00957 1007 RLSVYGALGILQGFAVFGYSMAVSIGGIQASRVLHQDLLHNKLRSPMSFFER-TPSGNLVNRFSKELDTVDSMIPPVIKM 1085 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHhcc-CChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345666677777777777788888899999999999999999999999998 499999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHH
Q 001438 183 FMHYISRFLGGFIIGFARVWQISLVTLSIVPLIALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDK 262 (1077)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~ 262 (1077)
++..++.+++.++++++.+|.++++++.++++.+++..++.+..+...+...+..+...+.+.|+++|+++||+|++|++
T Consensus 1086 ~~~~~~~~i~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~l~~~~~E~l~Gi~tIraf~~~~~ 1165 (1522)
T TIGR00957 1086 FMGSLFNVIGALIVILLATPIAAVIIPPLGLLYFFVQRFYVASSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQER 1165 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCcHHHHHhhhHHH
Confidence 99999999999888888888776665555555555555555556665566666777888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcccCHHHHHHHHHHHHHHHHHHHHhHHH
Q 001438 263 AVKVYKEALSNTYKYGRKAGLAKGLGLGSMHCVLFLSWSLLVWYVSVVVH-KHISNGGESFTTMLNVVIAGLSLGQAAPD 341 (1077)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~-~~~~~~g~~~~~~~~~~~~~~~l~~~~~~ 341 (1077)
|.+++.+..+...+..........+......++.. .++++.+...+. .+.+++|.+..++.+......++..+...
T Consensus 1166 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~g~l~~~l~~~~~~~~~l~~l~~~ 1242 (1522)
T TIGR00957 1166 FIHQSDLKVDENQKAYYPSIVANRWLAVRLECVGN---CIVLFAALFAVISRHSLSAGLVGLSVSYSLQVTFYLNWLVRM 1242 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988887777655544444433333222221 233334444443 57789999877777777777888888889
Q ss_pred HHHHHHHHHHHHHHHHHhccCcccccc--cccCCCCCCCcccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCC
Q 001438 342 ITAFIRAKAAAYPIFEMIERDTMSKAS--SKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGS 419 (1077)
Q Consensus 342 ~~~~~~~~~s~~ri~~~l~~~~~~~~~--~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~ 419 (1077)
+..+..+.+|.+|+.++++.+++.+.. ....+..++.+|.|+|+||+|+|+++. +++|+|+||+|++||++||||+|
T Consensus 1243 ~~~~e~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~-~~vL~~is~~I~~GekiaIVGrT 1321 (1522)
T TIGR00957 1243 SSEMETNIVAVERLKEYSETEKEAPWQIQETAPPSGWPPRGRVEFRNYCLRYREDL-DLVLRHINVTIHGGEKVGIVGRT 1321 (1522)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCccccccCCCCCCCCCCCCcEEEEEEEEEeCCCC-cccccceeEEEcCCCEEEEECCC
Confidence 999999999999999999766543211 111112245678999999999997543 46999999999999999999999
Q ss_pred CCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhheeEEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHhH
Q 001438 420 GSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEA 499 (1077)
Q Consensus 420 GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~ 499 (1077)
|||||||+++|+|+|+|++|+|.+||+|+++++.+++|++|+||||||.+|+|||||||... .+++++++++|++.+++
T Consensus 1322 GsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~-~~~sdeei~~al~~a~l 1400 (1522)
T TIGR00957 1322 GAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPF-SQYSDEEVWWALELAHL 1400 (1522)
T ss_pred CCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCeEECCCCcccCccHHHHcCcc-cCCCHHHHHHHHHHcCc
Confidence 99999999999999999999999999999999999999999999999999999999999832 25789999999999999
Q ss_pred HHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCc
Q 001438 500 MSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRL 579 (1077)
Q Consensus 500 ~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~ 579 (1077)
++++.++|+|+||.+||+|.+||||||||+|||||++++|+|||||||||+||.++++.|++.|++..+++|+|+||||+
T Consensus 1401 ~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~~~TvI~IAHRl 1480 (1522)
T TIGR00957 1401 KTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRL 1480 (1522)
T ss_pred HHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999988999999999999
Q ss_pred hhHhhcCEEEEEECCEEEEecChhHHhcCCCchHHHHHHH
Q 001438 580 STIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAALVQL 619 (1077)
Q Consensus 580 ~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 619 (1077)
+++.+||||+||++|+|+|.|+|+||+++ ++.|+++++.
T Consensus 1481 ~ti~~~DrIlVld~G~IvE~G~~~eLl~~-~~~f~~l~~~ 1519 (1522)
T TIGR00957 1481 NTIMDYTRVIVLDKGEVAEFGAPSNLLQQ-RGIFYSMAKD 1519 (1522)
T ss_pred HHHHhCCEEEEEECCEEEEECCHHHHHhC-CCHHHHHHHH
Confidence 99999999999999999999999999987 7999998865
No 34
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-75 Score=645.59 Aligned_cols=555 Identities=22% Similarity=0.287 Sum_probs=446.0
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 54 DYILMSLGSIGACVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSSWIEVSCWMYTGERQA 133 (1077)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (1077)
++..+.++++++++..++...+....|++|..-... +....-.+..-....=.++++..+..|...........++.
T Consensus 14 ~~~~l~Lgi~l~~~t~lasigLl~lSGwfisasAia---g~~~~f~~~~p~a~VR~~aI~Rt~~RY~ERlvsH~AtfrvL 90 (573)
T COG4987 14 HKFGLLLGIVLAILTLLASIGLLTLSGWFISASAIA---GLAYIFNVMLPSAGVRGLAILRTAARYVERLVSHDATFRVL 90 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhc---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 344556666666666555555556778988763221 10000000001111223445555666666666666777888
Q ss_pred HHHHHHHHHHHHhCCchhhccCCChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 134 AKMRMAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFARVWQISLVTLSIVP 213 (1077)
Q Consensus 134 ~~lr~~~~~~ll~~~~~~f~~~~~~G~i~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~p 213 (1077)
.++|.++|+++...+.....+ .++||++||+..|++.+|+.+-..+.+.+..+..+.+..+..-+++|.+++.....+.
T Consensus 91 ~~lRv~~f~kl~p~sp~~~~r-~r~gdLL~RLvaDVd~Ld~lyLRvi~P~~~a~~~~~~~~i~L~f~~~~~Alll~~~ll 169 (573)
T COG4987 91 SALRVRLFEKLEPLSPALLLR-YRSGDLLNRLVADVDALDNLYLRVIAPAVVALVLIAVVTIGLSFFSIPLALLLGLILL 169 (573)
T ss_pred HHHHHHHHHhhccCChHHHHh-cChHhHHHHHHhhHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 999999999999999998887 5899999999999999999999888888888877777666666788887665444433
Q ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 214 LI-ALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGRKAGLAKGLGLGSM 292 (1077)
Q Consensus 214 l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (1077)
+. +++-.++.+..++..++..+..+...+.+.|.+.|....+.||.++.+.+.+++....+.+...|.+++.++.....
T Consensus 170 ~~lli~P~~~~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~~l~~~e~~~~~~q~k~~~~~~~~~a~~ 249 (573)
T COG4987 170 LLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTALEATEASWLKAQRKQARFTGLSDAIL 249 (573)
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33 33344456666666777777777888899999999999999999999999999999999999999999999888877
Q ss_pred HHHHHHHHH-HHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHhccCcccccccc
Q 001438 293 HCVLFLSWS-LLVWYVSVVVHKHISNGGESFTTMLNVVIAGLSLGQAA-PDITAFIRAKAAAYPIFEMIERDTMSKASSK 370 (1077)
Q Consensus 293 ~~~~~~~~~-~~~~~g~~~v~~~~~~~g~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~ 370 (1077)
.++..+..+ .++|.+. .+..|..+.......++.+.....++..+. ..+....+...|+.|+.++++.+++...+.+
T Consensus 250 ~l~~g~~v~~~l~w~a~-~~~~G~~~~~~aa~~ll~~f~~~eaf~~L~~~A~~~lgq~~~Sa~Rl~~i~~q~~e~~~~~~ 328 (573)
T COG4987 250 LLIAGLLVIGLLLWMAA-QVGAGALAQPGAALALLVIFAALEAFEPLAPGAFQHLGQVIASARRLNDILDQKPEVTFPDE 328 (573)
T ss_pred HHHHHHHHHHHHHHHHh-cCcCCCcchhHHHHHHHHHHHHHHHHhhhcchhHHHhhHHHHHHHHHhhhccCCcccCCCcc
Confidence 777666655 4455543 344455553222222222222233333333 4556778899999999999988766433211
Q ss_pred cCCCCCCCcccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCC
Q 001438 371 TGRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKG 450 (1077)
Q Consensus 371 ~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~ 450 (1077)
.....+..++++||+|+||++ +.++|+|+||++++||++||+|+||||||||+++|.|.++|++|+|.++|.++..
T Consensus 329 ---~~~~~~~~l~~~~vsF~y~~~-~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~ 404 (573)
T COG4987 329 ---QTATTGQALELRNVSFTYPGQ-QTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIAS 404 (573)
T ss_pred ---ccCCccceeeeccceeecCCC-ccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhh
Confidence 111112279999999999976 4579999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHhhheeEEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHH
Q 001438 451 LDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIA 530 (1077)
Q Consensus 451 ~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~ 530 (1077)
++.+.+|+.|++++|.+++|++|+|||+.+++|++++|+++++++.+++.+++++.|+|++|.+||.|..||||||||++
T Consensus 405 l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLA 484 (573)
T COG4987 405 LDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLA 484 (573)
T ss_pred CChhhHHHHHhhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhhcCEEEEEECCEEEEecChhHHhcCCC
Q 001438 531 ISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPN 610 (1077)
Q Consensus 531 lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~ 610 (1077)
|||++++|++++||||||.+||+.||+++++.|.+..+|||+|+||||+..++.||||+||++|+++|+|+|.+|+.+ +
T Consensus 485 lAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHrL~~le~~drIivl~~Gkiie~G~~~~Ll~~-~ 563 (573)
T COG4987 485 LARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLERMDRIIVLDNGKIIEEGTHAELLAN-N 563 (573)
T ss_pred HHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEEecccccHhhcCEEEEEECCeeeecCCHHhhhcc-c
Confidence 999999999999999999999999999999999998899999999999999999999999999999999999999996 8
Q ss_pred chHHHHHH
Q 001438 611 SAYAALVQ 618 (1077)
Q Consensus 611 ~~~~~~~~ 618 (1077)
+.|+++++
T Consensus 564 g~~~~l~q 571 (573)
T COG4987 564 GRYKRLYQ 571 (573)
T ss_pred cHHHHHhc
Confidence 99998875
No 35
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=100.00 E-value=2.1e-75 Score=706.48 Aligned_cols=524 Identities=23% Similarity=0.300 Sum_probs=449.3
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 59 SLGSIGACVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSSWIEVSCWMYTGERQAAKMRM 138 (1077)
Q Consensus 59 ~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~ 138 (1077)
.++++++++.++..+..++++++++|.+.... ........+...+++++++..++.+++.+...+.+.++..++|.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~ 81 (529)
T TIGR02857 6 ALLGLLGALGALLIIAQAWLLARVIDGLISAG----EPLAELLPALGALALAVLLRALLGWLGERAAARAAAAVKSQLRE 81 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC----CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555566666677778899999763111 01122233444455556667788888888888999999999999
Q ss_pred HHHHHHHhCCchhhccCCChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 139 AYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFARVWQISLVTLSIVPLIALA 218 (1077)
Q Consensus 139 ~~~~~ll~~~~~~f~~~~~~G~i~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~pl~~~~ 218 (1077)
++|+++++.|..+|++ .++|++++|+++|++.+++.+...+..++..+..+++.+++++.++|.+++++++.+|++.++
T Consensus 82 ~l~~~l~~~~~~~~~~-~~~g~~~~~l~~di~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~l~~~~l~~~~ 160 (529)
T TIGR02857 82 RLLAAVAALGPGWLQG-RPSGELATLALEGVEALDGYFARYLPQLVLAVIIPLAILAAVFPADWISGLILLLTAPLIPIF 160 (529)
T ss_pred HHHHHHHhCCchhhcc-CChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 9999999999999998 599999999999999999999888888888888888888899999999999998888888877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 219 GGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGRKAGLAKGLGLGSMHCVLFL 298 (1077)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (1077)
...+.++.++..++.++..++..+.+.|.++|+++||+|++|+.+.++|++..++..+...+..+..+....+..++..+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (529)
T TIGR02857 161 MILIGWAAQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAFLSSAVLELFATL 240 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77778888888888888889999999999999999999999999999999998888887777777666665555555555
Q ss_pred HHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhccCcccccccccCCCCCCC
Q 001438 299 SWSLLVWYVSVVVHKHISNGGESFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEMIERDTMSKASSKTGRKLDKL 378 (1077)
Q Consensus 299 ~~~~~~~~g~~~v~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~ 378 (1077)
..++++.++++.+..|.++.|.+++++.+......|+..+...+..+.+++.+.+|+.++++.+++..+. .....+.
T Consensus 241 ~~~~~~~~~~~~~~~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~~~---~~~~~~~ 317 (529)
T TIGR02857 241 SVALVAVYIGFRLLAGDLDLATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLAGK---APVTAAP 317 (529)
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCC---cCCCCCC
Confidence 5555555566666688999999888777766777788888888999999999999999999754321111 1111112
Q ss_pred cccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhh
Q 001438 379 SGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQ 458 (1077)
Q Consensus 379 ~~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~ 458 (1077)
.+.|+++||+|+|+++ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+|+++++.+++|+
T Consensus 318 ~~~i~~~~v~f~y~~~-~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~ 396 (529)
T TIGR02857 318 APSLEFSGLSVAYPGR-RAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRD 396 (529)
T ss_pred CCeEEEEEEEEECCCC-CcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHh
Confidence 3579999999999854 246999999999999999999999999999999999999999999999999999999999999
Q ss_pred heeEEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccC
Q 001438 459 QIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKN 538 (1077)
Q Consensus 459 ~i~~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~ 538 (1077)
+++||||+|++|++|++|||.++.++.+++++.++++.++++++++++|+|+||.+||+|.+||||||||++||||++++
T Consensus 397 ~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~ 476 (529)
T TIGR02857 397 QIAWVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRD 476 (529)
T ss_pred heEEEcCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999888889999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhhcCEEEEE
Q 001438 539 PSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVV 591 (1077)
Q Consensus 539 p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~~d~i~~l 591 (1077)
|+|+|||||||+||+++++.+.+.+++..+++|+|+||||+++++.||+|++|
T Consensus 477 ~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l 529 (529)
T TIGR02857 477 APLLLLDEPTAHLDAETEALVTEALRALAQGRTVLLVTHRLALAERADRIVVL 529 (529)
T ss_pred CCEEEEeCcccccCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEeC
Confidence 99999999999999999999999999988899999999999999999999985
No 36
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=1.9e-75 Score=768.74 Aligned_cols=509 Identities=21% Similarity=0.269 Sum_probs=404.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccCCChhHHHHHHHhHHHHHHHHHHHHHHH
Q 001438 103 YSLDFVYLSVAILFSSWIEVSCWMYTGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGN 182 (1077)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~i~~r~~~D~~~i~~~~~~~~~~ 182 (1077)
+..++++++++..++.+++.+++.+.+.+...++|.+++++++++|++|||+ .++|+|+||+++|++.+++.+...+..
T Consensus 955 ~~~i~~~l~~~~~i~~~~~~~~~~~~~~~~~~~L~~~l~~~ll~~p~~ffd~-~~~G~IlnR~s~Di~~id~~l~~~~~~ 1033 (1622)
T PLN03130 955 YNLIYALLSFGQVLVTLLNSYWLIMSSLYAAKRLHDAMLGSILRAPMSFFHT-NPLGRIINRFAKDLGDIDRNVAVFVNM 1033 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhcc-CCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555667777778888888888889999999999999999999999999998 499999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHH
Q 001438 183 FMHYISRFLGGFIIGFARVWQISLVTLSIVPLIAL-AGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGED 261 (1077)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~pl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~ 261 (1077)
++..++.+++.++++++++|... +.++++++++. +..++.+..++..+......+...+.+.|+++|+++||+|++|+
T Consensus 1034 ~~~~~~~~i~~~i~i~~~~~~~~-~~~~pl~~~~~~~~~~~~~~~r~~~r~~~~~~s~~~~~~~Etl~Gi~tIraf~~~~ 1112 (1622)
T PLN03130 1034 FLGQIFQLLSTFVLIGIVSTISL-WAIMPLLVLFYGAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYD 1112 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhCCHHHHHhCcHHH
Confidence 99999888888888887777332 22222222221 12223333333444444555667789999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---------cCHHHHHHHHHHHHHHH
Q 001438 262 KAVKVYKEALSNTYKYGRKAGLAKGLGLGSMHCVLFLSWSLLVWYVSVVVHKHI---------SNGGESFTTMLNVVIAG 332 (1077)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~---------~~~g~~~~~~~~~~~~~ 332 (1077)
+|.+++.+..+...+..........+......+ +..+++++.+...+..+. .+.|.+++ +.....
T Consensus 1113 ~f~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~---~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~G~~ls---~~~~~~ 1186 (1622)
T PLN03130 1113 RMAEINGRSMDNNIRFTLVNMSSNRWLAIRLET---LGGLMIWLTASFAVMQNGRAENQAAFASTMGLLLS---YALNIT 1186 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHcccccccchhhhHHHHHHHH---HHHHHH
Confidence 888877766665444332221111111111111 111222222333333221 22333333 222333
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHhccCcccccccc--cCCCCCCCcccEEEEeEEEEcCCCCCcccccceeEEecCC
Q 001438 333 LSLGQAAPDITAFIRAKAAAYPIFEMIERDTMSKASSK--TGRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAG 410 (1077)
Q Consensus 333 ~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~--~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g 410 (1077)
..+..+......+..+.++.+|+.++++.+++.+...+ .....++.+|.|+|+||+|+|+++ .+++|+|+||+|++|
T Consensus 1187 ~~l~~l~~~~~~~e~~~~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~-~~~VL~~is~~I~~G 1265 (1622)
T PLN03130 1187 SLLTAVLRLASLAENSLNAVERVGTYIDLPSEAPLVIENNRPPPGWPSSGSIKFEDVVLRYRPE-LPPVLHGLSFEISPS 1265 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccccCCCCCCCCCCCCcEEEEEEEEEeCCC-CCceecceeEEEcCC
Confidence 44555555667778999999999999987654321111 111224556889999999999643 246999999999999
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhheeEEccCCCcccccHHHHHhcCCCCCCHHHH
Q 001438 411 KIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEI 490 (1077)
Q Consensus 411 ~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~ 490 (1077)
|++|||||||||||||+++|+|+|+|++|+|.+||+|+++++.+++|++|++|||||.||+|||||||.++. +.+++++
T Consensus 1266 ekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~-~~tdeei 1344 (1622)
T PLN03130 1266 EKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFN-EHNDADL 1344 (1622)
T ss_pred CEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccEEECCCCccccccHHHHhCcCC-CCCHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999876 5789999
Q ss_pred HHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCC
Q 001438 491 TRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGR 570 (1077)
Q Consensus 491 ~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~ 570 (1077)
++|++.+++++++..+|+|+||.+||+|.+|||||||||||||||+++|+|||||||||+||.++++.|++.|++..+++
T Consensus 1345 ~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~~~~ 1424 (1622)
T PLN03130 1345 WESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSC 1424 (1622)
T ss_pred HHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998999
Q ss_pred eEEEEccCchhHhhcCEEEEEECCEEEEecChhHHhcCCCchHHHHHHHHH
Q 001438 571 TTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAALVQLQE 621 (1077)
Q Consensus 571 t~i~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~ 621 (1077)
|+|+||||++++.+||||+||++|+|+|.|+|+||++++++.|+++++...
T Consensus 1425 TvI~IAHRL~tI~~~DrIlVLd~G~IvE~Gt~~eLl~~~~g~f~~L~~~~~ 1475 (1622)
T PLN03130 1425 TMLIIAHRLNTIIDCDRILVLDAGRVVEFDTPENLLSNEGSAFSKMVQSTG 1475 (1622)
T ss_pred EEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHHhCCCCHHHHHHHHcC
Confidence 999999999999999999999999999999999999876799999987654
No 37
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=2.3e-74 Score=757.90 Aligned_cols=516 Identities=19% Similarity=0.237 Sum_probs=418.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccCCChhHHHHHHHhHHHHHHHHHHHHHHH
Q 001438 103 YSLDFVYLSVAILFSSWIEVSCWMYTGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGN 182 (1077)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~i~~r~~~D~~~i~~~~~~~~~~ 182 (1077)
+..+|+++.++..++.+++.+.....+.+...++|.++++++++.|+.|||+ .++|+++||+++|++.+++.+...+..
T Consensus 1000 ~l~~y~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ffd~-~~~G~ilnR~s~Di~~id~~l~~~l~~ 1078 (1560)
T PTZ00243 1000 YLYVYLGIVLLGTFSVPLRFFLSYEAMRRGSRNMHRDLLRSVSRGTMSFFDT-TPLGRILNRFSRDIDILDNTLPMSYLY 1078 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhccC-CCccHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3344444444444555555555556677788899999999999999999998 499999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHH
Q 001438 183 FMHYISRFLGGFIIGFARVWQISLVTLSIVPLIALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDK 262 (1077)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~ 262 (1077)
++..++.+++.++++++.+|.+.++++.+..+...+..++.+..+...+......+.....++|+++|+++||+|++|+.
T Consensus 1079 ~~~~~~~~i~~li~~~~~~p~~~~~~i~~~~~~~~i~~~~~~~~r~~~r~~~~~~s~l~s~~~E~l~G~~tIraf~~e~~ 1158 (1560)
T PTZ00243 1079 LLQCLFSICSSILVTSASQPFVLVALVPCGYLYYRLMQFYNSANREIRRIKSVAKSPVFTLLEEALQGSATITAYGKAHL 1158 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHcCHHHHHhCccHHH
Confidence 99999999999888888888544333222222223333444445555555556677788999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhcccCHHHHHHHHHHHHHHHHHHHHhHH
Q 001438 263 AVKVYKEALSNTYKYGRKAGLAKGLGLGSMHCVLFLSWSLLVWYVSV--VVHKHISNGGESFTTMLNVVIAGLSLGQAAP 340 (1077)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~--~v~~~~~~~g~~~~~~~~~~~~~~~l~~~~~ 340 (1077)
+.+++.+..++..+...+......+......++..+..+++.+++.. +...+.+++|.+..++.+......++..+..
T Consensus 1159 ~~~~~~~~~d~~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~a~~l~~~l~~l~~ 1238 (1560)
T PTZ00243 1159 VMQEALRRLDVVYSCSYLENVANRWLGVRVEFLSNIVVTVIALIGVIGTMLRATSQEIGLVSLSLTMAMQTTATLNWLVR 1238 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999888777666554444444433343333333333333332 2223446788765555555666778888888
Q ss_pred HHHHHHHHHHHHHHHHHHhccCccccccc-------------------------c-cCC---CCCCCcccEEEEeEEEEc
Q 001438 341 DITAFIRAKAAAYPIFEMIERDTMSKASS-------------------------K-TGR---KLDKLSGHIEFKDVSFCY 391 (1077)
Q Consensus 341 ~~~~~~~~~~s~~ri~~~l~~~~~~~~~~-------------------------~-~~~---~~~~~~~~i~~~~v~~~y 391 (1077)
.+..+.+++++.+|+.++++..++.+... . ..+ +.++..|.|+|+||+|+|
T Consensus 1239 ~~~~le~~~~s~eRi~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf~Y 1318 (1560)
T PTZ00243 1239 QVATVEADMNSVERLLYYTDEVPHEDMPELDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQMRY 1318 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCccccccccccccccccccccccccccccccccCCCcccCCCCCCCCeEEEEEEEEEe
Confidence 88999999999999999996433211000 0 000 012235789999999999
Q ss_pred CCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhheeEEccCCCccc
Q 001438 392 PSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFA 471 (1077)
Q Consensus 392 ~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~ 471 (1077)
++. .+++|+|+||+|++||++||||+||||||||+++|+|+|+|++|+|.+||+|+++++.+++|++|+||||||.||+
T Consensus 1319 ~~~-~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~ 1397 (1560)
T PTZ00243 1319 REG-LPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFD 1397 (1560)
T ss_pred CCC-CCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCcccc
Confidence 754 3469999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccC-CCEEEEeCcCCC
Q 001438 472 TTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKN-PSILLLDEATSA 550 (1077)
Q Consensus 472 ~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~-p~illlDEpts~ 550 (1077)
|||||||..+ ++.+++++++|++.+++.+++..+|+|+||.+||+|.+|||||||||||||||+++ |+|||||||||+
T Consensus 1398 gTIreNIdp~-~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSa 1476 (1560)
T PTZ00243 1398 GTVRQNVDPF-LEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATAN 1476 (1560)
T ss_pred ccHHHHhCcc-cCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCcc
Confidence 9999999865 36789999999999999999999999999999999999999999999999999996 899999999999
Q ss_pred CCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhhcCEEEEEECCEEEEecChhHHhcCCCchHHHHHHHHH
Q 001438 551 LDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAALVQLQE 621 (1077)
Q Consensus 551 lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~ 621 (1077)
||+++++.|++.|++..+++|+|+||||++++.+||+|+||++|+|+|.|+|+||++++++.|+++++.+.
T Consensus 1477 LD~~te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~~DrIlVLd~G~VvE~Gt~~eLl~~~~~~f~~l~~~~~ 1547 (1560)
T PTZ00243 1477 IDPALDRQIQATVMSAFSAYTVITIAHRLHTVAQYDKIIVMDHGAVAEMGSPRELVMNRQSIFHSMVEALG 1547 (1560)
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEEEeccHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHhC
Confidence 99999999999999988899999999999999999999999999999999999999876899999987653
No 38
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=6.1e-74 Score=694.27 Aligned_cols=522 Identities=21% Similarity=0.262 Sum_probs=444.4
Q ss_pred HhHHHHHHHHHHHHHHHHhcccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 001438 69 GVSVPVFFIFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSSWIEVSCWMYTGERQAAKMRMAYLRSMLNQD 148 (1077)
Q Consensus 69 ~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~ 148 (1077)
.+.....++++++++|...... . ......+...++++.++..++.+++.++..+.+.++..++|.++|++++++|
T Consensus 19 ~~~~l~~p~~~~~iid~~~~~~----~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~ 93 (544)
T TIGR01842 19 NILMLAPPLYMLQVYDRVLTSG----S-VPTLLMLTVLALGLYLFLGLLDALRSFVLVRIGEKLDGALNQPIFAASFSAT 93 (544)
T ss_pred HHHHHHHHHHHHHHHHHhccCC----c-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 3333344457788998653211 1 1222233444444555566778888888888999999999999999999999
Q ss_pred chhhccCCChhHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 149 ISLFDTEASTGEVISAITSDIIVVQDALSE-KVGNFMHYISRFLGGFIIGFARVWQISLVTLSIVPLIALAGGMYAYVTI 227 (1077)
Q Consensus 149 ~~~f~~~~~~G~i~~r~~~D~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~pl~~~~~~~~~~~~~ 227 (1077)
+. ..++..+++++|++.+++.+.. .+..++..++.+ +.++++++++|.+++++++..|+++++..+..+..+
T Consensus 94 ~~------~~~~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~l~li~l~~~~l~~~i~~~~~~~~~ 166 (544)
T TIGR01842 94 LR------RGKIDGLQALRDLDQLRQFLTGPGLFAFFDAPWMP-IYLLVCFLLHPWIGILALGGAVVLVGLALLNNRATK 166 (544)
T ss_pred cc------CccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH-HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 83 2356788999999999998876 444455544444 445678899999999888888887777777777778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 228 GLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGRKAGLAKGLGLGSMHCVLFLSWSLLVWYV 307 (1077)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 307 (1077)
+..++.++..++..+.+.|.++|+++||+|++|+.+.++|++..++..+...+.....+....+..++..+..++++++|
T Consensus 167 ~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 246 (544)
T TIGR01842 167 KPLKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAGMLSNLSKYFRIVLQSLVLGLG 246 (544)
T ss_pred HHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888889999999999999999999999999999999999998888888777777776666666666777888899
Q ss_pred HHHHHhcccCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhccCcccccccccCCCCCCCcccEEEEeE
Q 001438 308 SVVVHKHISNGGESFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEMIERDTMSKASSKTGRKLDKLSGHIEFKDV 387 (1077)
Q Consensus 308 ~~~v~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v 387 (1077)
++++.+|.+|+|.+++++.+......|+..+...+..+.+++++.+|+.++++.+++.++. ....+.++.++++|+
T Consensus 247 ~~l~~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~----~~~~~~~~~i~~~~v 322 (544)
T TIGR01842 247 AYLAIDGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDPA----MPLPEPEGHLSVENV 322 (544)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccCC----CCCCCCCCeEEEEEE
Confidence 9999999999999998887777778899999999999999999999999999765432211 111223457999999
Q ss_pred EEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhheeEEccCC
Q 001438 388 SFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEP 467 (1077)
Q Consensus 388 ~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~ 467 (1077)
+|+|++. ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||+++.+++.+++|++++||||+|
T Consensus 323 ~~~y~~~-~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~ 401 (544)
T TIGR01842 323 TIVPPGG-KKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDV 401 (544)
T ss_pred EEEcCCC-CccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhheEEecCCc
Confidence 9999753 346899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCc
Q 001438 468 ALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEA 547 (1077)
Q Consensus 468 ~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~p~illlDEp 547 (1077)
++|++|++|||.++.++.++++++++++.+++.++++.+|+|++|.+|++|.+||||||||++||||++++|+++|||||
T Consensus 402 ~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~~ililDEp 481 (544)
T TIGR01842 402 ELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEP 481 (544)
T ss_pred ccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 99999999999987777889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHhhcCEEEEEECCEEEEecChhHHhc
Q 001438 548 TSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELIS 607 (1077)
Q Consensus 548 ts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 607 (1077)
||+||+++++.+.+.|++.. +++|+|+||||++.++.||+|++|++|++++.|+|+|+++
T Consensus 482 ts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 542 (544)
T TIGR01842 482 NSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVLA 542 (544)
T ss_pred ccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEeeCCHHHHhh
Confidence 99999999999999999875 6899999999999999999999999999999999999875
No 39
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=1.4e-74 Score=761.71 Aligned_cols=513 Identities=19% Similarity=0.248 Sum_probs=407.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccCCChhHHHHHHHhHHHHHHHHHHHHHH
Q 001438 102 KYSLDFVYLSVAILFSSWIEVSCWMYTGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVG 181 (1077)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~i~~r~~~D~~~i~~~~~~~~~ 181 (1077)
.|...|++++++..++.+++.+++.+.+.+...++|.+++++++++|++|||+ .++|+++||+++|++.+++.+...+.
T Consensus 951 ~~l~~y~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~p~~ff~~-~~~G~ilnr~s~Di~~id~~l~~~~~ 1029 (1495)
T PLN03232 951 FYIVVYALLGFGQVAVTFTNSFWLISSSLHAAKRLHDAMLNSILRAPMLFFHT-NPTGRVINRFSKDIGDIDRNVANLMN 1029 (1495)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeCc-CCchHHHHHhHhhHHHHHHHHHHHHH
Confidence 45666777777788888888888889999999999999999999999999998 49999999999999999999998888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccH
Q 001438 182 NFMHYISRFLGGFIIGFARVWQISLVTLSIVPLIALA-GGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGE 260 (1077)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~pl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e 260 (1077)
.++..++.+++.+++++++++...++ ++++++++.. ..++.+..+...+......+...+.+.|+++|+++||+|++|
T Consensus 1030 ~~~~~~~~~i~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~~~~~~~E~l~G~~tIraf~~~ 1108 (1495)
T PLN03232 1030 MFMNQLWQLLSTFALIGTVSTISLWA-IMPLLILFYAAYLYYQSTSREVRRLDSVTRSPIYAQFGEALNGLSSIRAYKAY 1108 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhcChHHHhcCCcH
Confidence 88888888888877777766533222 2222222211 122223333444455566677788999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccC----HHHHHH-HHHHHHHHHHH
Q 001438 261 DKAVKVYKEALSNTYKYGRKAGLAKGLGLGSMHCVLFLSWSLLVWYVSVVVHK-HISN----GGESFT-TMLNVVIAGLS 334 (1077)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~-~~~~----~g~~~~-~~~~~~~~~~~ 334 (1077)
++|.+++.+..+...+..........+.... +..+..+++++.+...+.. +... .+..+. ++.+......+
T Consensus 1109 ~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 1185 (1495)
T PLN03232 1109 DRMAKINGKSMDNNIRFTLANTSSNRWLTIR---LETLGGVMIWLTATFAVLRNGNAENQAGFASTMGLLLSYTLNITTL 1185 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHH
Confidence 9988888777665554433222111111111 1111222222223333332 2211 111122 22233334456
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHhccCccccccccc--CCCCCCCcccEEEEeEEEEcCCCCCcccccceeEEecCCcE
Q 001438 335 LGQAAPDITAFIRAKAAAYPIFEMIERDTMSKASSKT--GRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKI 412 (1077)
Q Consensus 335 l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~--~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~ 412 (1077)
+..+...+..+..+.++.+|+.++++.+++.+..... .+..++.+|.|+|+||+|+|+++ .+++|+|+||+|++||+
T Consensus 1186 l~~l~~~~~~~~~~~~s~eRi~e~~~~~~e~~~~~~~~~~~~~~p~~g~I~f~nVsf~Y~~~-~~~vL~~isl~I~~Gek 1264 (1495)
T PLN03232 1186 LSGVLRQASKAENSLNSVERVGNYIDLPSEATAIIENNRPVSGWPSRGSIKFEDVHLRYRPG-LPPVLHGLSFFVSPSEK 1264 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCCCCCCCCCCCCcEEEEEEEEEECCC-CCcccccceEEEcCCCE
Confidence 6777778888999999999999999876543211111 11224556789999999999643 24699999999999999
Q ss_pred EEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhheeEEccCCCcccccHHHHHhcCCCCCCHHHHHH
Q 001438 413 VALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITR 492 (1077)
Q Consensus 413 ~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~ 492 (1077)
+|||||||||||||+++|+|+|+|++|+|.+||+|+++++.+++|++|+||||||.+|+|||||||.++. +.+++++++
T Consensus 1265 vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~~-~~sdeei~~ 1343 (1495)
T PLN03232 1265 VGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFS-EHNDADLWE 1343 (1495)
T ss_pred EEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHHcCCCC-CCCHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999875 678999999
Q ss_pred HHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeE
Q 001438 493 AAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTT 572 (1077)
Q Consensus 493 ~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~ 572 (1077)
+++.++++++++++|+|+||.+||+|.+||||||||+||||||+++|+|||||||||+||+++++.|++.|++..+++|+
T Consensus 1344 al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~~~Tv 1423 (1495)
T PLN03232 1344 ALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTM 1423 (1495)
T ss_pred HHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998889999
Q ss_pred EEEccCchhHhhcCEEEEEECCEEEEecChhHHhcCCCchHHHHHHHHH
Q 001438 573 VVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAALVQLQE 621 (1077)
Q Consensus 573 i~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~ 621 (1077)
|+||||++++.+||+|+||++|+|+|.|+|+||++++++.|+++++.+.
T Consensus 1424 I~IAHRl~ti~~~DrIlVL~~G~ivE~Gt~~eLl~~~~~~f~~l~~~~~ 1472 (1495)
T PLN03232 1424 LVIAHRLNTIIDCDKILVLSSGQVLEYDSPQELLSRDTSAFFRMVHSTG 1472 (1495)
T ss_pred EEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHhC
Confidence 9999999999999999999999999999999999886679999987653
No 40
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.8e-74 Score=716.08 Aligned_cols=512 Identities=22% Similarity=0.311 Sum_probs=435.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccCCChhHHHHHHHhHHHHHHHHHHHHH
Q 001438 101 AKYSLDFVYLSVAILFSSWIEVSCWMYTGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKV 180 (1077)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~i~~r~~~D~~~i~~~~~~~~ 180 (1077)
..+..+|.+++++..++..++.+.+...+.+.+.+++.+++++++|.||+|||.+ ++|+|+||+++|++.+|+.+...+
T Consensus 858 ~~~~~vY~~l~~~~~~~~~~rs~~~~~~~l~aS~~Lh~~ml~~Ilrapm~FFdtT-P~GRILNRFSkD~~~vD~~Lp~~~ 936 (1381)
T KOG0054|consen 858 SFYLGVYALLGVASSLLTLLRSFLFAKGGLKASRKLHDKLLNSILRAPMSFFDTT-PTGRILNRFSKDIDTVDVLLPFTL 936 (1381)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhcCCC-CccchhhhcccchHHHHHhhHHHH
Confidence 4567778888888888988999999999999999999999999999999999995 999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccH
Q 001438 181 GNFMHYISRFLGGFIIGFARVWQISLVTLSIVPLIALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGE 260 (1077)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e 260 (1077)
..++..++.+++.++++.+..|...++++.+..+.+.+..++.+-.+...+......+....+++|+++|+.|||+|+.|
T Consensus 937 ~~~~~~~~~~l~~~~vi~~~~P~fli~~~pl~v~~~~~~~~Y~~tsReLkRLesitRSPi~sh~~Etl~GlsTIRAf~~~ 1016 (1381)
T KOG0054|consen 937 EFFLQSLLNVLGILVVISYVTPWFLIAIIPLGVIYYFVQRYYLATSRELKRLESITRSPIYSHFSETLQGLSTIRAFGKE 1016 (1381)
T ss_pred HHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhcccchHHHhHHHHhcCcceeeecccc
Confidence 99999999999999999999998877666555555555566666666666666666777778999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHH
Q 001438 261 DKAVKVYKEALSNTYKYG---RKAGLAKGLGLGSMHCVLFLSWSLLVWYVSVVVHKHISNGGESFTTMLNVVIAGLSLGQ 337 (1077)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~g~~~~~~~~~~~~~~~l~~ 337 (1077)
++|.+++.+..+...+.. ....+|.++..-++..+..++.+++..+ ...+..++|.+=-.+.+.+.+...+..
T Consensus 1017 ~rf~~~~~~~~D~~~~~~f~~~~a~RWla~Rle~ig~~~v~~~al~~vl----~~~~~~~~g~vGLslsyal~lt~~l~~ 1092 (1381)
T KOG0054|consen 1017 ERFIQENDELIDENSRAFFLSISANRWLAVRLELLGNLVVLIAALFAVL----LPSGLISPGLVGLSLSYALQLTGLLQW 1092 (1381)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----ccCCCCCcchHHHHHHHHHHHHHHHHH
Confidence 999999999887765543 3456666665554333322222221111 112224556554444555666666777
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhccCcccccc--cccCCCCCCCcccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEE
Q 001438 338 AAPDITAFIRAKAAAYPIFEMIERDTMSKAS--SKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVAL 415 (1077)
Q Consensus 338 ~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~--~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~i 415 (1077)
+......+....+|.+|+.++.+.+++.+.. ...+++.||.+|+|+|+|++.+|.++ .++||+||||+|+|||++||
T Consensus 1093 ~vR~~~elEn~m~SVERv~eY~~~~~E~p~~~~~~~pp~~WP~~G~I~f~~~~~RYrp~-lp~VLk~is~~I~p~eKVGI 1171 (1381)
T KOG0054|consen 1093 LVRQSSELENNMVSVERVLEYTDIPSEAPLEIEESRPPPSWPSKGEIEFEDLSLRYRPN-LPLVLKGISFTIKPGEKVGI 1171 (1381)
T ss_pred HHHHHHHHHhcchhhhHHHHHhcCCCCCCCCCcCCCCCCCCCCCCeEEEEEeEEEeCCC-CcchhcCceEEEcCCceEEE
Confidence 7778888889999999999999865551111 11134558999999999999999765 35799999999999999999
Q ss_pred EcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhheeEEccCCCcccccHHHHHhcCCCCCCHHHHHHHHH
Q 001438 416 VGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAK 495 (1077)
Q Consensus 416 vG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~ 495 (1077)
||++|||||||+++|.|+.+|.+|+|.|||.|+.+++++++|++++.+||||.||+||+|.|+. +...++++++++|++
T Consensus 1172 VGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsGTvR~NLD-Pf~e~sD~~IW~ALe 1250 (1381)
T KOG0054|consen 1172 VGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSGTVRFNLD-PFDEYSDDEIWEALE 1250 (1381)
T ss_pred eCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCCceecCccccccC-cccccCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999986 235689999999999
Q ss_pred HHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEE
Q 001438 496 LSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVV 575 (1077)
Q Consensus 496 ~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~v 575 (1077)
.+++.+.+.++|.|+|+.|.|+|.|+|-||||.+||||||+++++||+|||||+++|++|...||+.|++..+++|||.|
T Consensus 1251 ~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~dcTVltI 1330 (1381)
T KOG0054|consen 1251 RCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEFKDCTVLTI 1330 (1381)
T ss_pred HhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHhcCCeEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCchhHhhcCEEEEEECCEEEEecChhHHhcCCCchHHHHHHH
Q 001438 576 AHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAALVQL 619 (1077)
Q Consensus 576 tH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 619 (1077)
+||++++.+||||+|||+|+|+|.|+|++|++++++.|+++...
T Consensus 1331 AHRl~TVmd~DrVlVld~G~v~EfdsP~~Ll~~~~S~f~~~l~~ 1374 (1381)
T KOG0054|consen 1331 AHRLNTVMDSDRVLVLDAGRVVEFDSPAELLSDKDSLFSSLLKE 1374 (1381)
T ss_pred eeccchhhhcCeEEEeeCCeEeecCChHHHHhCCcchHHHHHHH
Confidence 99999999999999999999999999999999888988755543
No 41
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=2.3e-70 Score=720.22 Aligned_cols=502 Identities=18% Similarity=0.241 Sum_probs=404.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccCCChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 111 SVAILFSSWIEVSCWMYTGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRF 190 (1077)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~i~~r~~~D~~~i~~~~~~~~~~~~~~~~~~ 190 (1077)
+++..++.+++.+++.+.+.+...++|.++++++++.|++||++ .++|+++||+++|++.+++.+...+..++..++.+
T Consensus 935 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~-~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~ 1013 (1490)
T TIGR01271 935 ADSVLALGFFRGLPLVHTLLTVSKRLHEQMLHSVLQAPMAVLNT-MKAGRILNRFTKDMAIIDDMLPLTLFDFIQLTLIV 1013 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCC-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445566777778888899999999999999999999999998 49999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHH
Q 001438 191 LGGFIIGFARVWQISLVTLSIVPLIALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEA 270 (1077)
Q Consensus 191 ~~~~~~~~~~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~~~~~~~~~ 270 (1077)
++.++++++++|.++++++.++.+++++..++.+..+...+......+.....+.|+++|+.+||+|++|+.+.+++.+.
T Consensus 1014 i~~l~~i~~~~p~l~l~~~~l~~~~~~~~~~~~~~~r~l~~~~~~~~s~l~~~~~Etl~Gl~tIraf~~~~~~~~~~~~~ 1093 (1490)
T TIGR01271 1014 LGAIFVVSVLQPYIFIAAIPVAVIFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETLFHKA 1093 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHhCCcHHHHHHHHHH
Confidence 99999889899887654333333333333444444455555556666778889999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001438 271 LSNTYKYGRKAGLAKGLGLGSMHCVLFLS--WSLLVWYVSVVVHKHISNGGESFTTMLNVVIAGLSLGQAAPDITAFIRA 348 (1077)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~v~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 348 (1077)
.+...+..........+......++..+. .+++++++.. ..+.|.+-.++.+.+....++..+...+..+..+
T Consensus 1094 ~~~~~~~~~~~~~~~~wl~~~~~~i~~~~~~~~~~l~~~~~-----~~~~g~~g~~l~~~~~l~~~l~~l~~~~~~le~~ 1168 (1490)
T TIGR01271 1094 LNLHTANWFLYLSTLRWFQMRIDIIFVFFFIAVTFIAIGTN-----QDGEGEVGIILTLAMNILSTLQWAVNSSIDVDGL 1168 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87654433322222222221111111111 1111222221 2333333232333334445566667777888899
Q ss_pred HHHHHHHHHHhccCcccccccc----------------cCCCCCCCcccEEEEeEEEEcCCCCCcccccceeEEecCCcE
Q 001438 349 KAAAYPIFEMIERDTMSKASSK----------------TGRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKI 412 (1077)
Q Consensus 349 ~~s~~ri~~~l~~~~~~~~~~~----------------~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~ 412 (1077)
+.|.+|+.++++.+++...... ..+..|+..|.|+|+||+|+|++. .+++|+|+||+|++||+
T Consensus 1169 ~~s~eRi~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~-~~~vL~~is~~I~~Gek 1247 (1490)
T TIGR01271 1169 MRSVSRVFKFIDLPQEEPRPSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEA-GRAVLQDLSFSVEGGQR 1247 (1490)
T ss_pred HHHHHHHHHHhcCCCccccccccccccccccccccccCCCCCCCCCCCeEEEEEEEEEeCCC-CcceeeccEEEEcCCCE
Confidence 9999999999976554221100 001124556889999999999753 35799999999999999
Q ss_pred EEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhheeEEccCCCcccccHHHHHhcCCCCCCHHHHHH
Q 001438 413 VALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITR 492 (1077)
Q Consensus 413 ~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~ 492 (1077)
+||||+||||||||+++|+|+++ .+|+|.+||+|+++++.+++|++|+||||+|.+|+|||||||... ...+++++++
T Consensus 1248 vaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~-~~~tdeei~~ 1325 (1490)
T TIGR01271 1248 VGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPY-EQWSDEEIWK 1325 (1490)
T ss_pred EEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhCcc-cCCCHHHHHH
Confidence 99999999999999999999997 799999999999999999999999999999999999999999754 3578999999
Q ss_pred HHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeE
Q 001438 493 AAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTT 572 (1077)
Q Consensus 493 ~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~ 572 (1077)
+++.+++.+++..+|+|+||.+||+|.+||||||||+||||||+++|+|||||||||+||.++++.|++.|++..+++|+
T Consensus 1326 aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~Tv 1405 (1490)
T TIGR01271 1326 VAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTV 1405 (1490)
T ss_pred HHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998899999
Q ss_pred EEEccCchhHhhcCEEEEEECCEEEEecChhHHhcCCCchHHHHHHHHHH
Q 001438 573 VVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAALVQLQEA 622 (1077)
Q Consensus 573 i~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~ 622 (1077)
|+||||++++..||+|+||++|+|+|.|+|++|+++ ++.|+++++.+..
T Consensus 1406 I~IaHRl~ti~~~DrIlvL~~G~ivE~g~p~~Ll~~-~~~f~~l~~~~~~ 1454 (1490)
T TIGR01271 1406 ILSEHRVEALLECQQFLVIEGSSVKQYDSIQKLLNE-TSLFKQAMSAADR 1454 (1490)
T ss_pred EEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHHcC-CcHHHHHHHHhCh
Confidence 999999999999999999999999999999999975 8999999876543
No 42
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=100.00 E-value=5.4e-70 Score=659.35 Aligned_cols=534 Identities=19% Similarity=0.164 Sum_probs=426.1
Q ss_pred hHHHHHHhhc-hhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccCCchhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 001438 42 SLFKLFAFAD-FYDYILMSLGSIGACVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSSWI 120 (1077)
Q Consensus 42 ~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (1077)
.+++++++++ ++ +..+++++++.++.++.....+.+++.+++... ... ... ...++++.++..++.++
T Consensus 4 ~~~~l~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~i~~~i~~~~----~~~--~~~----~~~~~~~~~~~~~~~~~ 72 (555)
T TIGR01194 4 AIGEILALLRSPF-PAITAFSIALGLAGGLAIIALLASINNAIHEEN----FLG--QGS----LFSFGGLCLLALLFRIG 72 (555)
T ss_pred hHHHHHHHHhhcc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----ccc--chH----HHHHHHHHHHHHHHHHH
Confidence 3455555555 33 333444445555555555555556666665310 000 001 11233344455677788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccCCChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 121 EVSCWMYTGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFAR 200 (1077)
Q Consensus 121 ~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~i~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (1077)
..++....+.++..++|.++|++++++|+.+|++ .++|++++|+++|++.+++.+.. +..++..+.++++.+++++++
T Consensus 73 ~~~~~~~~~~~~~~~lR~~l~~~l~~~~~~~~~~-~~~G~l~srl~~Dv~~i~~~~~~-~~~~~~~~~~~~~~~~~l~~~ 150 (555)
T TIGR01194 73 ADIFPAYAGMHIIANLRIALCEKILGAPIEEIDR-RGAHNLIPLLTHDIDQINAFLFI-FPPIAIALAIFFFCIAYLAYL 150 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHh-cCcchhhHHHhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 8888888999999999999999999999999998 48999999999999999998864 777888888888888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHH--HHHHHHHHHHHHHHHHH
Q 001438 201 VWQISLVTLSIVPLIALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGED--KAVKVYKEALSNTYKYG 278 (1077)
Q Consensus 201 ~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~--~~~~~~~~~~~~~~~~~ 278 (1077)
+|.+++++++++|+.+++..+..++.++...+.++..++.++.+.|.+.|+++||+|+.++ .+.+++.+..++..+..
T Consensus 151 ~~~L~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (555)
T TIGR01194 151 SVPMFAITISAIIIGTAAQLLAFMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESANNIADLH 230 (555)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHHHHhhHHHHHHHHHH
Confidence 9999999888888887777777777777788888888999999999999999999999954 56778888887777766
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 001438 279 RKAGLAKGLGLGSMHCVLFLSWSLLVWYVSVVVHKHISNGGESFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEM 358 (1077)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~ 358 (1077)
.+.....+....+..++..+...+.++++++. +.++.|.+++++.+......|+..+...+..+++++++++|+.++
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~a~~s~~ri~~l 307 (555)
T TIGR01194 231 IIEILIFIAAENFGQLLFFLLIGCALFAAAMF---ASIDAAAISAFVLALLYIKGPLEMLVSALPILAQAQIACQRLADF 307 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66555554444433344334434444555432 678999988888777777889999999999999999999999999
Q ss_pred hccCcccccc---cc-cCC---CCCCCcccEEEEeEEEEcCCCC--CcccccceeEEecCCcEEEEEcCCCCcHHHHHHH
Q 001438 359 IERDTMSKAS---SK-TGR---KLDKLSGHIEFKDVSFCYPSRP--DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISL 429 (1077)
Q Consensus 359 l~~~~~~~~~---~~-~~~---~~~~~~~~i~~~~v~~~y~~~~--~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~ 429 (1077)
++.+++.+.. +. .+. ......+.|+++||+|+|++.+ +.++|+|+||++++||+++|+||||||||||+++
T Consensus 308 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~l 387 (555)
T TIGR01194 308 GERFNEPEPELELSDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKL 387 (555)
T ss_pred HhhhccccccccccccccccccccCCCCceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHH
Confidence 7632111000 00 000 1112235799999999997532 2368999999999999999999999999999999
Q ss_pred HhcccCCCccEEEECCeeCCCCCHHHHhhheeEEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccc
Q 001438 430 IERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPER 509 (1077)
Q Consensus 430 l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g 509 (1077)
|+|+++|++|+|.+||+++++++.+++|++++||+|||++|++|+++|+ .++.+++++.++++.+++.++++.+|+|
T Consensus 388 l~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~---~~~~~~~~~~~~~~~~~l~~~~~~lp~g 464 (555)
T TIGR01194 388 FCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDE---GEHASLDNAQQYLQRLEIADKVKIEDGG 464 (555)
T ss_pred HhCCCCCCCcEEEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhccc---ccchhHHHHHHHHHHcCCchhhcccccc
Confidence 9999999999999999999999999999999999999999999999995 3556788899999999999999999999
Q ss_pred hhhhhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHH-HH-hCCCeEEEEccCchhHhhcCE
Q 001438 510 FETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALD-RV-MVGRTTVVVAHRLSTIRNADV 587 (1077)
Q Consensus 510 ~~t~~~~~g~~LSgGqkqri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~-~~-~~~~t~i~vtH~~~~~~~~d~ 587 (1077)
+||. .+||||||||++||||++++|+|+|||||||+||+++++.+.+.+. .. .+++|+|+||||+++++.||+
T Consensus 465 ~~t~-----~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~~d~ 539 (555)
T TIGR01194 465 FSTT-----TALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQ 539 (555)
T ss_pred cCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCE
Confidence 9984 6899999999999999999999999999999999999999988764 34 468999999999999999999
Q ss_pred EEEEECCEEEEe
Q 001438 588 IAVVQGRKIVKT 599 (1077)
Q Consensus 588 i~~l~~G~i~~~ 599 (1077)
|++|++|+++|.
T Consensus 540 i~~l~~G~i~~~ 551 (555)
T TIGR01194 540 IIKLAAGCIVKD 551 (555)
T ss_pred EEEEECCEEEEe
Confidence 999999999875
No 43
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.7e-72 Score=597.33 Aligned_cols=491 Identities=31% Similarity=0.412 Sum_probs=416.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCchhhccCCChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Q 001438 123 SCWMYTGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFII-GFARV 201 (1077)
Q Consensus 123 ~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~i~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 201 (1077)
..+...++.....+--..|.|+.++++.|+-+ ..+|.+..-+.....-|+..+...+...+..++-+....++ ...++
T Consensus 4 ~~fs~v~q~a~r~la~~~F~h~~~Lsl~fHl~-r~TGglsR~ierGtkgI~~i~~~~l~~i~P~~~Ei~l~~vi~~~~~~ 82 (497)
T COG5265 4 RLFSPVGQIAVRVLAYVTFFHLHSLSLRFHLE-RRTGGLSRAIERGTKGIETILRWILFNILPTLVEISLVAVILWRVYG 82 (497)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHhcchhhhhh-cccCceeeHhhcCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcc
Confidence 34556677778888888999999999999987 47888877666666666666655555555555554444433 34578
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH
Q 001438 202 WQISLVTLSIVPLIALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGRKA 281 (1077)
Q Consensus 202 ~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 281 (1077)
|+.++++++++.+.+++.....-+.....+...+.-++++....+++-+..++|.|+.|+.+..+|.+.++.+.+...|.
T Consensus 83 ~~f~~~t~vtv~lY~~ftv~~s~wr~~~rr~~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~~a~~k~ 162 (497)
T COG5265 83 WWFALTTLVTVILYLLFTVIVSDWRTDFRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIKV 162 (497)
T ss_pred cHHHHHHHHHHHHHHHhheeehhhhHHHHHhhhhhhhHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHHHHHHHH
Confidence 99888888888777777666655555566666777778888899999999999999999999999999999998888776
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcc
Q 001438 282 GLAKGLGLGSMHCVLFLSWSLLVWYVSVVVHKHISNGGESFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEMIER 361 (1077)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~ 361 (1077)
..-.++....-..+......+....+...+..|.+|.|++...-.++.+...|+..+......+.+++.-.++.+++++.
T Consensus 163 ~~Sl~~Ln~gQ~~I~~~~l~~~m~~s~~~v~~g~~TvgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mfdLl~~ 242 (497)
T COG5265 163 HVSLLVLNFGQTAIFSTGLRVMMTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLLDV 242 (497)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhhcHHHHhhccCCchhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHHhhcc
Confidence 55444433322333333444555566777788999999987766666777888888888899999999999999999987
Q ss_pred CcccccccccCCCCC-CCcccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccE
Q 001438 362 DTMSKASSKTGRKLD-KLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGE 440 (1077)
Q Consensus 362 ~~~~~~~~~~~~~~~-~~~~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~ 440 (1077)
+.+..+. +..++.+ -..+.+.|+||+|.|.. ..++|+++||++++|+++|+|||+|+||||++++|.|+|++++|.
T Consensus 243 ~~~v~d~-pda~~L~~~~~g~v~F~~V~F~y~~--~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~ 319 (497)
T COG5265 243 EAEVSDA-PDAPPLWPVRLGAVAFINVSFAYDP--RRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGS 319 (497)
T ss_pred chhhccC-CCCccccccccceEEEEEEEeeccc--cchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCce
Confidence 6554332 1222333 33578999999999974 457999999999999999999999999999999999999999999
Q ss_pred EEECCeeCCCCCHHHHhhheeEEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCC
Q 001438 441 ILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQ 520 (1077)
Q Consensus 441 i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~ 520 (1077)
|.+||+|+++...+.+|+.||.||||..||++|+..||.+|++..+++++..+++.++.+++++.+|+|++|.|||+|-.
T Consensus 320 I~id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~Vgerglk 399 (497)
T COG5265 320 ITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLK 399 (497)
T ss_pred EEEcchhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhhcCEEEEEECCEEEEec
Q 001438 521 LSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTG 600 (1077)
Q Consensus 521 LSgGqkqri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~~d~i~~l~~G~i~~~g 600 (1077)
||||||||+||||+++++|+||+|||+|||||.++|+.|+..|++..+|+|+++|+||++++-+||.|+||++|+|+|.|
T Consensus 400 lSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~~~rttlviahrlsti~~adeiivl~~g~i~erg 479 (497)
T COG5265 400 LSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVERG 479 (497)
T ss_pred ccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHhCCCeEEEEeehhhhccCCceEEEeeCCEEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHhcCCCchHHHHHH
Q 001438 601 SHEELISNPNSAYAALVQ 618 (1077)
Q Consensus 601 ~~~~l~~~~~~~~~~~~~ 618 (1077)
+|+||+++ +|.|++|+.
T Consensus 480 ~h~~ll~~-~g~ya~mw~ 496 (497)
T COG5265 480 THEELLAA-GGLYAEMWR 496 (497)
T ss_pred cHHHHHHc-CChHHHHhc
Confidence 99999998 999999874
No 44
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=100.00 E-value=1.8e-67 Score=576.78 Aligned_cols=520 Identities=21% Similarity=0.266 Sum_probs=441.6
Q ss_pred HHHHHHHHHHHHHhcccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhc
Q 001438 74 VFFIFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSSWIEVSCWMYTGERQAAKMRMAYLRSMLNQDISLFD 153 (1077)
Q Consensus 74 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~ 153 (1077)
..++++-++-|.+.+... ..++.....+.+++.++..++-+++.....+.+.++..++...+|.+.++.+..--
T Consensus 41 ~~~lyMLQVyDRVL~S~s-----~~TLv~Ltvlal~ly~~~glLd~iR~~~l~Rig~~lD~~L~~~v~~a~~~~~l~~~- 114 (580)
T COG4618 41 TGPLYMLQVYDRVLPSRS-----VPTLVMLTVLALGLYAFQGLLDAIRSRVLVRIGERLDRQLNGPVFAASFSAPLLRR- 114 (580)
T ss_pred hhhHHHHHHHhhhccCCC-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHhhc-
Confidence 334455577787654321 12222333334444556678888999999999999999999999999987766542
Q ss_pred cCCChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 154 TEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFARVWQISLVTLSIVPLIALAGGMYAYVTIGLIARV 233 (1077)
Q Consensus 154 ~~~~~G~i~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~ 233 (1077)
..|+=..-+ +|.++++.+++..-+..+.+.-.+++-+.++|.+.++++++.++...+++.+.++--+..++..++.
T Consensus 115 ---~~g~~~Q~L-rDL~qvR~Fltg~g~~A~fDaPW~P~yl~v~fl~Hp~lG~~a~~ga~iLv~la~ln~~~t~~p~~eA 190 (580)
T COG4618 115 ---GSGDGLQPL-RDLDQVRQFLTGTGLTAFFDAPWMPLYLAVIFLFHPWLGLIALAGAIILVVLALLNERATRKPLKEA 190 (580)
T ss_pred ---CCCccccch-hhHHHHHHHHcCCCcchhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHH
Confidence 233322233 7999999999774444444443456677788999999999999888888888888888888888888
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001438 234 RKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGRKAGLAKGLGLGSMHCVLFLSWSLLVWYVSVVVHK 313 (1077)
Q Consensus 234 ~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~ 313 (1077)
.+...+.+..++-+..|..+|++.|..+...++|.+.+.++.+...+.+-..+....+.-.+-.+....++..|++++.+
T Consensus 191 ~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l~~rW~~~~~~~L~~~~~asd~~~~~~~~Sr~~Rm~lQs~iLg~GA~Lvi~ 270 (580)
T COG4618 191 SEASIRANQLADATLRNAEVIEAMGMLGNLAKRWGRFNAAYLSAQERASDRNGAFGALSRALRMALQSAVLGLGAWLVIK 270 (580)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcceeeEEc
Confidence 88888899999999999999999999999999999999999998888877777777777777777778888999999999
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhccCcccccccccCCCCCCCcccEEEEeEEEEcCC
Q 001438 314 HISNGGESFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEMIERDTMSKASSKTGRKLDKLSGHIEFKDVSFCYPS 393 (1077)
Q Consensus 314 ~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~ 393 (1077)
|++|+|.+++.-...-....|+-.....+.++..++.|.+|+.+++...|...+ .-+.+..++.+.++++++.=|+
T Consensus 271 ge~t~G~mIA~SIl~gRaLaPid~aI~~Wkq~~~Ar~s~~Rl~~lL~~~p~~~~----~m~LP~P~g~L~Ve~l~~~PPg 346 (580)
T COG4618 271 GEITPGMMIAGSILSGRALAPIDLAIANWKQFVAARQSYKRLNELLAELPAAAE----RMPLPAPQGALSVERLTAAPPG 346 (580)
T ss_pred CcCCcchhhHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccC----CCCCCCCCceeeEeeeeecCCC
Confidence 999999988764444444567778888899999999999999999987654322 2234556789999999997665
Q ss_pred CCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhheeEEccCCCccccc
Q 001438 394 RPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATT 473 (1077)
Q Consensus 394 ~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~t 473 (1077)
. ++++++|+||++++||.+|||||||||||||.++|.|..+|.+|.|.+||-|+++++.+.+-++|||.||+..||+||
T Consensus 347 ~-~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~GT 425 (580)
T COG4618 347 Q-KKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGT 425 (580)
T ss_pred C-CCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCcccceecCCc
Confidence 4 578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCH
Q 001438 474 IRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDA 553 (1077)
Q Consensus 474 i~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~p~illlDEpts~lD~ 553 (1077)
|.|||.-..++.+.+++.+|+++++.||.|.++|+||||.||+.|..|||||||||+||||+|.||.+++||||-|+||.
T Consensus 426 IaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~ 505 (580)
T COG4618 426 IAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDS 505 (580)
T ss_pred HHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcch
Confidence 99999765667889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHh-CCCeEEEEccCchhHhhcCEEEEEECCEEEEecChhHHhcC
Q 001438 554 ESENSVQEALDRVM-VGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISN 608 (1077)
Q Consensus 554 ~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 608 (1077)
+.|..+.++|...+ +|.|+|+||||.+.+..+|+|++|++|++...|+.+|++++
T Consensus 506 ~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~Dkilvl~~G~~~~FG~r~eVLa~ 561 (580)
T COG4618 506 EGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDGRIAAFGPREEVLAK 561 (580)
T ss_pred hHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhcceeeeecCChHHhcCCHHHHHHH
Confidence 99999999998875 69999999999999999999999999999999999998865
No 45
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=100.00 E-value=9.5e-65 Score=613.85 Aligned_cols=461 Identities=18% Similarity=0.221 Sum_probs=364.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccCCChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 115 LFSSWIEVSCWMYTGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGF 194 (1077)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~i~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~ 194 (1077)
.++.+++.+...+.+.++..++|.+++++++++|+++|++ .++|++++|+++|++.+...+. .++.++..++.+++.+
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~lR~~l~~~ll~~~~~~~~~-~~~g~~lsrl~~dv~~i~~~~~-~l~~~~~~~~~~i~~~ 139 (547)
T PRK10522 62 MAVTLGSQLALTTLGHHFVYRLRSEFIKRILDTHVERIEQ-LGSASLLASLTSDVRNITIAFV-RLPELVQGIILTLGSA 139 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhc-cCccchHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 4466677778888899999999999999999999999998 4899999999999999998765 4677888888888899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccH---HHHHHHHHHHH
Q 001438 195 IIGFARVWQISLVTLSIVPLIALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGE---DKAVKVYKEAL 271 (1077)
Q Consensus 195 ~~~~~~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e---~~~~~~~~~~~ 271 (1077)
+++++++|.+++++++++|+.+++..++.++.++..++.++..++..+.+.|.++|+++++ ++.+ +.+.+++++..
T Consensus 140 ~~l~~~~~~l~li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~-~~~~~~~~~~~~~~~~~~ 218 (547)
T PRK10522 140 AYLAWLSPKMLLVTAIWMAVTIWGGFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELT-LNRERAEYVFENEYEPDA 218 (547)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhh-ccHHHHHHHHHHHHhHHH
Confidence 9999999999999999999988888888888888888888899999999999999999996 4433 46778888877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 001438 272 SNTYKYGRKAGLAKGLGLGSMHCVLFLSWSLLVWYVSVVVHKHISNGGESFTTMLNVVIAGLSLGQAAPDITAFIRAKAA 351 (1077)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s 351 (1077)
++..+...+..........+......+...+.+++++.. +..+.+....+..+......|+..+...+..+++++.+
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a 295 (547)
T PRK10522 219 QEYRHHIIRADTFHLSAVNWSNIMMLGAIGLVFYMANSL---GWADTNVAATYSLTLLFLRTPLLSAVGALPTLLSAQVA 295 (547)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777666555554444333322222222222233333321 11222322222222333456888888889999999999
Q ss_pred HHHHHHHhccCcccccccccCCCCCCCcccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHh
Q 001438 352 AYPIFEMIERDTMSKASSKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIE 431 (1077)
Q Consensus 352 ~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~ 431 (1077)
.+|+.++++.+++.+... ....+..+.|+++||+|+|+++ .++|+|+||++++||+++|+||||||||||+++|+
T Consensus 296 ~~ri~~l~~~~~~~~~~~---~~~~~~~~~i~~~~v~f~y~~~--~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~ 370 (547)
T PRK10522 296 FNKLNKLALAPYKAEFPR---PQAFPDWQTLELRNVTFAYQDN--GFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLT 370 (547)
T ss_pred HHHHHHHhcccccccccc---ccccCcCceEEEEEEEEEeCCC--CeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 999999876433211111 1111113579999999999743 36899999999999999999999999999999999
Q ss_pred cccCCCccEEEECCeeCCCCCHHHHhhheeEEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchh
Q 001438 432 RFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFE 511 (1077)
Q Consensus 432 g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~ 511 (1077)
|+|+|++|+|.+||+++++++.+++|++++||||||.+|++|++|| + ++.+++++.++++. ++.+.+
T Consensus 371 g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n---~-~~~~~~~~~~~~~~---------~~l~~~ 437 (547)
T PRK10522 371 GLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPE---G-KPANPALVEKWLER---------LKMAHK 437 (547)
T ss_pred CCCCCCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHHhhccc---c-CchHHHHHHHHHHH---------cCCchh
Confidence 9999999999999999999999999999999999999999999999 2 33445555444443 333333
Q ss_pred hhhcC---CCCCCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEccCchhHhhcC
Q 001438 512 TQVGE---RGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRNAD 586 (1077)
Q Consensus 512 t~~~~---~g~~LSgGqkqri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~~~~d 586 (1077)
+..++ +|.+||||||||++||||++++|+++|||||||+||+++++.+.+.+.+.. +++|+|+||||++.++.||
T Consensus 438 ~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~~d 517 (547)
T PRK10522 438 LELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHAD 517 (547)
T ss_pred hhccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHhCC
Confidence 33333 378999999999999999999999999999999999999999999987653 4899999999999999999
Q ss_pred EEEEEECCEEEEe
Q 001438 587 VIAVVQGRKIVKT 599 (1077)
Q Consensus 587 ~i~~l~~G~i~~~ 599 (1077)
+|++|++|+++|.
T Consensus 518 ~i~~l~~G~i~e~ 530 (547)
T PRK10522 518 RLLEMRNGQLSEL 530 (547)
T ss_pred EEEEEECCEEEEe
Confidence 9999999999987
No 46
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=100.00 E-value=7.5e-62 Score=595.50 Aligned_cols=531 Identities=15% Similarity=0.099 Sum_probs=421.4
Q ss_pred hHHHHHHhhchhhH----HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccCCchhhhhHHHHHHHHHHHHHHHHHHH
Q 001438 42 SLFKLFAFADFYDY----ILMSLGSIGACVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFS 117 (1077)
Q Consensus 42 ~~~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (1077)
.+.++++++.++.+ ..+++.+++.++..++....+++.+.++|.+... +...+...+..+.+.+++..++..+.
T Consensus 78 ~~~~l~~~~~p~~~~~~~~~l~~~~~~~~~~t~~~l~~~~l~~~iid~l~~~--~~~~f~~~l~~~~l~~~~~~~~~~~~ 155 (659)
T TIGR00954 78 KLDFLLKILIPRVFCKETGLLILIAFLLVSRTYLSVYVATLDGQIESSIVRR--SPRNFAWILFKWFLIAPPASFINSAI 155 (659)
T ss_pred HHHHHHHHHcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666655433 3455555566666667777778889999986421 11111111222333333344444555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccCCChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 118 SWIEVSCWMYTGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIG 197 (1077)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~i~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (1077)
.++..++......++..++|..++++....++.+||+ ++|++++|+++|++.+.+.+...+..++..++.+++.++.+
T Consensus 156 ~~~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~~~d~--~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii~~~~~L 233 (659)
T TIGR00954 156 KYLLKELKLRFRVRLTRYLYSKYLSGFTFYKVSNLDS--RIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVILYSFKL 233 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeccCCC--CCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666677788888888888877788888885 57999999999999999999999999999999998888877
Q ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHH
Q 001438 198 FA-RVWQISLVTLSIVPLIALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYK 276 (1077)
Q Consensus 198 ~~-~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~ 276 (1077)
+. .+|.+++++++.+|+.+++..++.+.+.+..++.++..++.....+|.++|+++||+|+.|+.+.+++++..++..+
T Consensus 234 ~~~~~~~l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~~ 313 (659)
T TIGR00954 234 LTALGSVGPAGLFAYLFATGVVLTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVE 313 (659)
T ss_pred HHhcchHHHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 75 99999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH-h----cccCHHHHHHHHHH----HHHHHHHHHHhHHHHHHH
Q 001438 277 YGRKAGLAKGLGLGSMHCVLFL--SWSLLVWYVSVVVH-K----HISNGGESFTTMLN----VVIAGLSLGQAAPDITAF 345 (1077)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~v~-~----~~~~~g~~~~~~~~----~~~~~~~l~~~~~~~~~~ 345 (1077)
...+..++.+...++..++... ..+..++.|...+. . |.+|.|.+++.+.. +.....|+..+...+..+
T Consensus 314 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~~~~~~g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~i 393 (659)
T TIGR00954 314 HLNLIIKFRFSYGFLDNIVAKYTWSAVGLVAVSIPIFDKTHPAFLEMSEEELMQEFYNNGRLLLKAADALGRLMLAGRDM 393 (659)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999888888877777666542 22233333342332 2 67888876653322 334466888888899999
Q ss_pred HHHHHHHHHHHHHhccCcccccc-------cc-cC--------------CCCCCCcccEEEEeEEEEcCCCCCcccccce
Q 001438 346 IRAKAAAYPIFEMIERDTMSKAS-------SK-TG--------------RKLDKLSGHIEFKDVSFCYPSRPDVAIFDKF 403 (1077)
Q Consensus 346 ~~~~~s~~ri~~~l~~~~~~~~~-------~~-~~--------------~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i 403 (1077)
+++.++.+|++++++.+++.+.. +. .+ .......+.|+++|++|+|+++ .++|+|+
T Consensus 394 ~~~~~~~~Ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~~--~~il~~i 471 (659)
T TIGR00954 394 TRLAGFTARVDTLLQVLDDVKSGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPNG--DVLIESL 471 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccccccccccccccccCCCeEEEEeeEEECCCC--Ceeeecc
Confidence 99999999999999754321100 00 00 0011123569999999999743 3689999
Q ss_pred eEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhheeEEccCCCcccccHHHHHhcCC-
Q 001438 404 CLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGK- 482 (1077)
Q Consensus 404 sl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~- 482 (1077)
||++++||+++|+||||||||||+++|+|+++|++|+|.+++ |++++||||+|++|++|++|||.++.
T Consensus 472 sl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~-----------~~~i~~v~Q~~~l~~~tv~eni~~~~~ 540 (659)
T TIGR00954 472 SFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA-----------KGKLFYVPQRPYMTLGTLRDQIIYPDS 540 (659)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC-----------CCcEEEECCCCCCCCcCHHHHHhcCCC
Confidence 999999999999999999999999999999999999999874 45799999999999999999999874
Q ss_pred ------CCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHH
Q 001438 483 ------DDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESE 556 (1077)
Q Consensus 483 ------~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~p~illlDEpts~lD~~~~ 556 (1077)
+..+++++.++++..++.++++. |.|+||..+ .+.+||||||||++||||++++|+++|||||||+||++++
T Consensus 541 ~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~~~~~~-~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~ 618 (659)
T TIGR00954 541 SEDMKRRGLSDKDLEQILDNVQLTHILER-EGGWSAVQD-WMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVE 618 (659)
T ss_pred hhhhhccCCCHHHHHHHHHHcCCHHHHhh-cCCcccccc-cccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHH
Confidence 23456788888999998888877 999999876 5779999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCeEEEEccCchhHhhcCEEEEEEC
Q 001438 557 NSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQG 593 (1077)
Q Consensus 557 ~~i~~~l~~~~~~~t~i~vtH~~~~~~~~d~i~~l~~ 593 (1077)
+.+.+.+++. ++|+|+||||++.++.||+|++|++
T Consensus 619 ~~l~~~l~~~--~~tvI~isH~~~~~~~~d~il~l~~ 653 (659)
T TIGR00954 619 GYMYRLCREF--GITLFSVSHRKSLWKYHEYLLYMDG 653 (659)
T ss_pred HHHHHHHHHc--CCEEEEEeCchHHHHhCCEEEEEeC
Confidence 9999998763 8999999999999999999999974
No 47
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.6e-61 Score=551.17 Aligned_cols=391 Identities=27% Similarity=0.450 Sum_probs=368.3
Q ss_pred hHHHHHhhcccchHHHHHHHHHHHHHhhHHhHHHHHHHHHHHhhccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 683 SAIKLYSMVRPDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYYMDWDTTQREVKKITILFCCAAVITVIVHAIEHLSF 762 (1077)
Q Consensus 683 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 762 (1077)
-.++++.+.+|+|+++..|..+.++........|...+++++.++.. .............+.++.++..++.+++.+++
T Consensus 134 ~~~rl~~l~~~~~~~l~~a~~~l~vss~~~~~iP~~~G~~id~~~~~-~~~~~~~~~~~~~l~~l~~~~a~~~~~r~~~~ 212 (716)
T KOG0058|consen 134 LLKRLLGLLKPEWKWLVAAFVLLLVSSLINMFIPYYLGKLIDTISEG-DDSADALKRACTILLGLFLIGALANAIRGGLL 212 (716)
T ss_pred HHHHHHHHhchhHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56799999999999999999999999888889999999999887761 11123344456677788888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCccccccccCCchhHHHHHhhcHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHH
Q 001438 763 GIMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQNFGLVTASFVIAFILNWRI 842 (1077)
Q Consensus 763 ~~~~~~~~~~Lr~~l~~~llr~p~~FFD~~~~~~G~IlnR~s~D~~~i~~~l~~~l~~~~~~~~~~~~~i~i~~~~~w~l 842 (1077)
.++++++..++|.++|++++||+++|||. |.+|+|++|+++|+..+...++..+...+++.++.++++++|++++|+|
T Consensus 213 ~~a~~rv~~rlR~~lF~sil~QdiaFFD~--nktGeL~SRLtsD~~~vs~svs~nls~~lR~~~~~~g~~~~M~~~S~~L 290 (716)
T KOG0058|consen 213 QYAGERVVARLRTDLFRSLLRQDIAFFDE--NKTGELISRLTSDTQIVSNSVSQNLSDGLRNLVQGFGGLGFMFSLSWRL 290 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhcc--CCccHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHH
Confidence 99999999999999999999999999995 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHcchHHHHHhcchHHHHHHHHHHhhhhhHHHHHHHHH
Q 001438 843 TLVVVATYPLIISGHISEKLFFQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRSFIRGQI 922 (1077)
Q Consensus 843 ~l~~l~~~Pl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Etl~Gi~tIrAf~~e~~~~~~f~~~~~~~~~~~~~~~~~ 922 (1077)
+++.+..+|++.+...++++++++.+++.|++..+++..+.|+++++||||+|++|+++.+||.+.+++..+...+.+..
T Consensus 291 tlv~~i~~P~v~~~~~~yG~~~rklS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~~~~~i~~k~a~a 370 (716)
T KOG0058|consen 291 TLVTLIVVPIVALVAKIYGKYLRKLSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLREVLKLSKKEAVA 370 (716)
T ss_pred HHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHcCCCC
Q 001438 923 AGIFYGISQFFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLALVPDLLKGNQMAASVFEVLDRKTQ 1002 (1077)
Q Consensus 923 ~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~ 1002 (1077)
.+.+++.++.+.......++|||+.++..|.++.+++.+|++|....+.++..+..++++++++..|++|+|+++|++|.
T Consensus 371 ~~~f~~~~~~~~~~~~~siL~~Gg~Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~rvFel~dr~P~ 450 (716)
T KOG0058|consen 371 YGIFFGSTNLLGNLAVLSILFYGGHLVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASERVFELMDRKPR 450 (716)
T ss_pred hhHhHhHHHHHHhHHHHHHHHhccchhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCcccc-cccccEEEeeeeeeCCCCCcccccccceeeeeCCCEEEEECCCCCCHHHHHHHHhhccCCCCCCC
Q 001438 1003 VIGDIGEELT-NVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKA 1077 (1077)
Q Consensus 1003 ~~~~~~~~~~-~~~G~I~f~nVsf~Y~~~~~~~VLk~vsl~I~~GekVaIVGrTGsGKSTLi~lL~Rfyd~~~G~i 1077 (1077)
++.. +...| ..+|.|+|+||+|+||+||+.+||||+||+|+|||+||+||||||||||+++||+|||||++|+|
T Consensus 451 i~~~-G~~~p~~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~I 525 (716)
T KOG0058|consen 451 IPLT-GTLAPDHLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRI 525 (716)
T ss_pred CCCC-CccccccccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeE
Confidence 9876 44333 68999999999999999999999999999999999999999999999999999999999999986
No 48
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=3.5e-52 Score=412.31 Aligned_cols=221 Identities=33% Similarity=0.552 Sum_probs=190.9
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCC-CCHHHHhhh
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKG-LDLKWLRQQ 459 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~-~~~~~~r~~ 459 (1077)
.|+++|++++|++ ..+|+|||++|++||.++|+||||||||||+++|.|+.+|++|+|.+||.++.. .+...+|++
T Consensus 2 mi~i~~l~K~fg~---~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~ 78 (240)
T COG1126 2 MIEIKNLSKSFGD---KEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRK 78 (240)
T ss_pred eEEEEeeeEEeCC---eEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHh
Confidence 4899999999974 469999999999999999999999999999999999999999999999987743 378889999
Q ss_pred eeEEccCCCcccc-cHHHHHhcCC---CCCCHHHH-HHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHH
Q 001438 460 IGLVNQEPALFAT-TIRENILYGK---DDATMEEI-TRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRA 534 (1077)
Q Consensus 460 i~~v~Q~~~lf~~-ti~~ni~~~~---~~~~~~~~-~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARa 534 (1077)
+|+|+|+..||+- |+.||+.++. ...+.++. ..|.+ + ++.. |+.......+.+||||||||+|||||
T Consensus 79 vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~---l---L~~V--GL~~ka~~yP~qLSGGQqQRVAIARA 150 (240)
T COG1126 79 VGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALE---L---LEKV--GLADKADAYPAQLSGGQQQRVAIARA 150 (240)
T ss_pred cCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHH---H---HHHc--CchhhhhhCccccCcHHHHHHHHHHH
Confidence 9999999999987 9999999874 12222222 22222 2 2222 44445566788999999999999999
Q ss_pred hccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHhcCCCch
Q 001438 535 IVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISNPNSA 612 (1077)
Q Consensus 535 l~~~p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~~ 612 (1077)
|+.+|+++|+|||||||||+...++.+.++++. .|.|.|+|||.+.+++. ||||+.|++|+|+++|+++++..++...
T Consensus 151 LaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~~p~~~ 230 (240)
T COG1126 151 LAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDNPKSE 230 (240)
T ss_pred HcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhcCCCCH
Confidence 999999999999999999999999999999875 68999999999999987 9999999999999999999999886544
No 49
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.6e-50 Score=419.47 Aligned_cols=226 Identities=36% Similarity=0.597 Sum_probs=194.3
Q ss_pred EEEEeEEEEcCCC--CCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHH---HH
Q 001438 382 IEFKDVSFCYPSR--PDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLK---WL 456 (1077)
Q Consensus 382 i~~~~v~~~y~~~--~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~---~~ 456 (1077)
|++++|++.|+.. ....+|+|+||+|++||+.||+|+||+|||||++++.++-.|++|+|.+||+|+..++.. .+
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~ 81 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQL 81 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHH
Confidence 7999999999853 235689999999999999999999999999999999999999999999999999887754 56
Q ss_pred hhheeEEccCCCccc-ccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHh
Q 001438 457 RQQIGLVNQEPALFA-TTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAI 535 (1077)
Q Consensus 457 r~~i~~v~Q~~~lf~-~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal 535 (1077)
|++||+++|++.|++ .||.||++|+..-....+-+...+..++.+++ |+....+..+.+||||||||++|||||
T Consensus 82 R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelV-----gL~dk~~~yP~qLSGGQKQRVaIARAL 156 (339)
T COG1135 82 RQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELV-----GLSDKADRYPAQLSGGQKQRVAIARAL 156 (339)
T ss_pred HhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHc-----CChhhhccCchhcCcchhhHHHHHHHH
Confidence 788999999999998 59999999986433322222333444455544 333445667889999999999999999
Q ss_pred ccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHhcCCCch
Q 001438 536 VKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISNPNSA 612 (1077)
Q Consensus 536 ~~~p~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~~ 612 (1077)
+.+|+|||.|||||||||++.+.|.+.|++.. -|-|+++|||.++.++. |||+.||++|+++|+|+..|+..+|...
T Consensus 157 a~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF~~Pk~~ 236 (339)
T COG1135 157 ANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVFANPKHA 236 (339)
T ss_pred hcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHhhcCcchH
Confidence 99999999999999999999999999998864 48999999999999987 9999999999999999999999887544
No 50
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=7.3e-50 Score=402.79 Aligned_cols=226 Identities=37% Similarity=0.582 Sum_probs=194.5
Q ss_pred EEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhee
Q 001438 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (1077)
Q Consensus 382 i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 461 (1077)
|+|+|||++|.+ ..+++|+||+|++||+++++|||||||||++++|.|+++|++|+|++||+++++++..++|++||
T Consensus 2 I~~~nvsk~y~~---~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IG 78 (309)
T COG1125 2 IEFENVSKRYGN---KKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIG 78 (309)
T ss_pred ceeeeeehhcCC---ceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhh
Confidence 799999999973 46899999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCCcccc-cHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccC
Q 001438 462 LVNQEPALFAT-TIRENILYGKD--DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKN 538 (1077)
Q Consensus 462 ~v~Q~~~lf~~-ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~ 538 (1077)
||-|+.-||+- ||.|||.+-.. .++.+++. .+..++.+.+ .|+.. ......+.+|||||+|||.+||||+.+
T Consensus 79 YviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~--~r~~ELl~lv-gL~p~--~~~~RyP~eLSGGQQQRVGv~RALAad 153 (309)
T COG1125 79 YVIQQIGLFPHLTVAENIATVPKLLGWDKERIK--KRADELLDLV-GLDPS--EYADRYPHELSGGQQQRVGVARALAAD 153 (309)
T ss_pred hhhhhcccCCCccHHHHHHhhhhhcCCCHHHHH--HHHHHHHHHh-CCCHH--HHhhcCchhcCcchhhHHHHHHHHhcC
Confidence 99999999976 99999987532 23333332 2233344433 23221 234567889999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEccCchhH-hhcCEEEEEECCEEEEecChhHHhcCCCchHHH
Q 001438 539 PSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTI-RNADVIAVVQGRKIVKTGSHEELISNPNSAYAA 615 (1077)
Q Consensus 539 p~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~vtH~~~~~-~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~ 615 (1077)
|+|+|+|||++||||.+++.+++.+.++.+ ++|+|+|||+++.. +-+|||.+|++|+|++.++|++++++|...|-+
T Consensus 154 P~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~~Pan~FV~ 233 (309)
T COG1125 154 PPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILANPANDFVE 233 (309)
T ss_pred CCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHhCccHHHHH
Confidence 999999999999999999999999988753 89999999999975 569999999999999999999999987665543
No 51
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4e-49 Score=387.93 Aligned_cols=221 Identities=33% Similarity=0.547 Sum_probs=197.3
Q ss_pred ccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCc-----cEEEECCeeCCC--CC
Q 001438 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLS-----GEILLDGNNIKG--LD 452 (1077)
Q Consensus 380 ~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~-----G~i~~~g~~~~~--~~ 452 (1077)
..++++|+++.|++ +.+|+|||++|++++++|++|||||||||+++++.|+.+..+ |+|.++|+++.+ .+
T Consensus 6 ~~~~~~~l~~yYg~---~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d 82 (253)
T COG1117 6 PAIEVRDLNLYYGD---KHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVD 82 (253)
T ss_pred ceeEecceeEEECc---hhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCC
Confidence 45899999999973 469999999999999999999999999999999999998875 999999999976 47
Q ss_pred HHHHhhheeEEccCCCcccccHHHHHhcCCCCC------CHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHH
Q 001438 453 LKWLRQQIGLVNQEPALFATTIRENILYGKDDA------TMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQK 526 (1077)
Q Consensus 453 ~~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~~~------~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqk 526 (1077)
..++|++||.|+|.|..|+.||+||+.||.... -++-++.+++.+.+++.++ + .+.+.+..|||||+
T Consensus 83 ~~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVK---D----rL~~sa~~LSGGQQ 155 (253)
T COG1117 83 VVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVK---D----RLHKSALGLSGGQQ 155 (253)
T ss_pred HHHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhH---H----HhhCCccCCChhHH
Confidence 889999999999999999999999999995321 1234667788887776543 2 34567888999999
Q ss_pred HHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHH
Q 001438 527 QRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEEL 605 (1077)
Q Consensus 527 qri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 605 (1077)
||+||||||.-+|+|||||||||||||.+..+|.+.|.+++++-|+|+|||+++...+ +|+..++.+|+++|.|+.+++
T Consensus 156 QRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~i 235 (253)
T COG1117 156 QRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKI 235 (253)
T ss_pred HHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHhh
Confidence 9999999999999999999999999999999999999999999999999999998765 999999999999999999999
Q ss_pred hcCCC
Q 001438 606 ISNPN 610 (1077)
Q Consensus 606 ~~~~~ 610 (1077)
..+|.
T Consensus 236 F~~P~ 240 (253)
T COG1117 236 FTNPK 240 (253)
T ss_pred hcCcc
Confidence 98764
No 52
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=1.6e-48 Score=426.00 Aligned_cols=237 Identities=26% Similarity=0.435 Sum_probs=218.4
Q ss_pred ccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhh
Q 001438 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQ 459 (1077)
Q Consensus 380 ~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~ 459 (1077)
|.|+++|++++|++. +.++|+|+||+|++||+++|+||||||||||+++|+|+++ .+|+|++||.++..++..++|++
T Consensus 1 g~i~~~nls~~~~~~-~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~ 78 (275)
T cd03289 1 GQMTVKDLTAKYTEG-GNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKA 78 (275)
T ss_pred CeEEEEEEEEEeCCC-CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhh
Confidence 468999999999743 2468999999999999999999999999999999999998 78999999999999999999999
Q ss_pred eeEEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccCC
Q 001438 460 IGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNP 539 (1077)
Q Consensus 460 i~~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~p 539 (1077)
|+|+||+|.+|++|++||+.... ..+.++++++++..++.+++..+|+++++.++++|.+||||||||++||||++++|
T Consensus 79 i~~v~q~~~lf~~tv~~nl~~~~-~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p 157 (275)
T cd03289 79 FGVIPQKVFIFSGTFRKNLDPYG-KWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKA 157 (275)
T ss_pred EEEECCCcccchhhHHHHhhhcc-CCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999996332 24567888889888888999999999999999999999999999999999999999
Q ss_pred CEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhhcCEEEEEECCEEEEecChhHHhcCCCchHHHHHHH
Q 001438 540 SILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAALVQL 619 (1077)
Q Consensus 540 ~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 619 (1077)
+|+||||||++||+.+++.+++.|++..+++|+|+|||+++.+..||||++|++|++++.|++++++++ .+.|++++..
T Consensus 158 ~illlDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~l~~~-~~~~~~~~~~ 236 (275)
T cd03289 158 KILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLNE-KSHFKQAISP 236 (275)
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHHHhhC-cHHHHHHHhh
Confidence 999999999999999999999999987778999999999999988999999999999999999999986 5777777754
Q ss_pred H
Q 001438 620 Q 620 (1077)
Q Consensus 620 ~ 620 (1077)
.
T Consensus 237 ~ 237 (275)
T cd03289 237 S 237 (275)
T ss_pred c
Confidence 3
No 53
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=1.5e-47 Score=435.95 Aligned_cols=229 Identities=30% Similarity=0.514 Sum_probs=187.3
Q ss_pred cEEEEeEEEEcCCCCC-cccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCC----ccEEEECCeeCCCCCHHH
Q 001438 381 HIEFKDVSFCYPSRPD-VAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPL----SGEILLDGNNIKGLDLKW 455 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~-~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~----~G~i~~~g~~~~~~~~~~ 455 (1077)
-++++|++..|..... ..+++||||+|.+||++||||+|||||||+.++|+|+.++. +|+|.++|.|+..++.+.
T Consensus 5 lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~ 84 (539)
T COG1123 5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSERE 84 (539)
T ss_pred eEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHH
Confidence 5899999999975532 25899999999999999999999999999999999999987 899999999999888765
Q ss_pred Hh----hheeEEccCCC-cccc--cHHHHHh----cCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChH
Q 001438 456 LR----QQIGLVNQEPA-LFAT--TIRENIL----YGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGG 524 (1077)
Q Consensus 456 ~r----~~i~~v~Q~~~-lf~~--ti~~ni~----~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgG 524 (1077)
+| +.|+||||+|. .+|- ||.+-|. ........+...++ .++.+.+ .+|+.... ...+.+||||
T Consensus 85 ~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a---~elL~~V-gl~~~~~~--~~yPheLSGG 158 (539)
T COG1123 85 MRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRA---VELLEQV-GLPDPERR--DRYPHQLSGG 158 (539)
T ss_pred HHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHH---HHHHHHc-CCCChhhh--ccCCcccCch
Confidence 53 46999999985 4543 6655553 22211112222222 2333333 46665443 5688999999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEccCchhHhh-cCEEEEEECCEEEEecC
Q 001438 525 QKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGS 601 (1077)
Q Consensus 525 qkqri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~ 601 (1077)
||||+.||+||+.+|++||+||||++||+.++++|.+.|+++. .|.++|+|||++..+.+ ||||+||++|+++|.|+
T Consensus 159 ~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE~G~ 238 (539)
T COG1123 159 MRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVETGP 238 (539)
T ss_pred HHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEEecC
Confidence 9999999999999999999999999999999999999999875 58999999999999876 99999999999999999
Q ss_pred hhHHhcCCCchHHH
Q 001438 602 HEELISNPNSAYAA 615 (1077)
Q Consensus 602 ~~~l~~~~~~~~~~ 615 (1077)
.+++++++...|.+
T Consensus 239 ~~~i~~~p~hpYT~ 252 (539)
T COG1123 239 TEEILSNPQHPYTR 252 (539)
T ss_pred HHHHHhccCCcccH
Confidence 99999886655543
No 54
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-47 Score=427.87 Aligned_cols=232 Identities=28% Similarity=0.459 Sum_probs=197.7
Q ss_pred CCCcccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccC-----CCccEEEECCeeCCC
Q 001438 376 DKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYE-----PLSGEILLDGNNIKG 450 (1077)
Q Consensus 376 ~~~~~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~-----~~~G~i~~~g~~~~~ 450 (1077)
++..+.|+++|++++|++. ..++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.+||+++..
T Consensus 75 ~~~~~~i~~~nls~~y~~~-~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~ 153 (329)
T PRK14257 75 FNHANVFEIRNFNFWYMNR-TKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRS 153 (329)
T ss_pred CCcCceEEEEeeEEEecCC-CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccc
Confidence 4556789999999999643 3469999999999999999999999999999999999996 579999999999974
Q ss_pred --CCHHHHhhheeEEccCCCcccccHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHH
Q 001438 451 --LDLKWLRQQIGLVNQEPALFATTIRENILYGKD--DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQK 526 (1077)
Q Consensus 451 --~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqk 526 (1077)
.+...+|++++||||+|++|++|++|||.|+.. ..++++.+++... ...+. ..+++++++.+++++.+||||||
T Consensus 154 ~~~~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~-~~l~~-~~L~~~l~~~~~~~~~~LSgGqk 231 (329)
T PRK14257 154 KKISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVE-KSLKS-AALWDEVKDDLDKAGNALSGGQQ 231 (329)
T ss_pred cccchHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHH-HHHHH-cCCcchhhhhhhCCcccCCHHHH
Confidence 445678899999999999999999999998642 1222332221111 11111 12556677889999999999999
Q ss_pred HHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHH
Q 001438 527 QRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEEL 605 (1077)
Q Consensus 527 qri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 605 (1077)
||++||||++++|+||||||||++||+++.+.+.+.|+++.+++|+|+|||+++++.. ||||++|++|+|++.|+++++
T Consensus 232 qRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g~~~~l 311 (329)
T PRK14257 232 QRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETKTI 311 (329)
T ss_pred HHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999998888999999999999987 999999999999999999999
Q ss_pred hcCCC
Q 001438 606 ISNPN 610 (1077)
Q Consensus 606 ~~~~~ 610 (1077)
..++.
T Consensus 312 ~~~~~ 316 (329)
T PRK14257 312 FIHPK 316 (329)
T ss_pred hcCCC
Confidence 87654
No 55
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.9e-43 Score=373.12 Aligned_cols=465 Identities=19% Similarity=0.232 Sum_probs=346.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccCCChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 113 AILFSSWIEVSCWMYTGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLG 192 (1077)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~i~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~ 192 (1077)
+..+.+.+........++.+..++|.++.++++..|+.-+++ .++++++.++++|+..|. +-...++.+.+....+++
T Consensus 60 lf~~ss~is~lg~t~~gq~~I~klr~~~~~kil~tplerier-~~~~rlla~L~~Dvr~IS-f~~s~lp~~~qa~il~l~ 137 (546)
T COG4615 60 LFMVSSLISQLGLTTLGQHFIYKLRSEFIKKILDTPLERIER-LGSARLLAGLTSDVRNIS-FAFSRLPELVQAIILTLG 137 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH-hcccchhhhhccccccee-ehHhhhHHHHHHHHHHHH
Confidence 334445555566777899999999999999999999999998 599999999999999998 444677889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHH--HHHHHHHHH
Q 001438 193 GFIIGFARVWQISLVTLSIVPLIALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGED--KAVKVYKEA 270 (1077)
Q Consensus 193 ~~~~~~~~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~--~~~~~~~~~ 270 (1077)
+.+...++++++.++..+.+.+..+...+...+..+.....++..++..+..+-.++|-|..+...--. .+.+.|...
T Consensus 138 s~aYLayLSp~mf~l~vV~ivv~~~~~~~~m~rv~k~~~aare~ed~Lq~~y~~il~G~KEL~l~r~R~~~~h~~~~~~~ 217 (546)
T COG4615 138 SAAYLAYLSPKMFLLTVVWIVVTIWGGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNRERAEYVHNNLYIPD 217 (546)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchhhheechHHHHHHHhhhcCcc
Confidence 999999999998888777777777777777788888888888888999999999999999999875322 223333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 001438 271 LSNTYKYGRKAGLAKGLGLGSMHCVLFLSWSLLVWYVSVVVHKHISNGGESFTTMLNVVIAGLSLGQAAPDITAFIRAKA 350 (1077)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 350 (1077)
-++..+................+++.+....+.+|....... -+.....+..+.++.+..|+.++...++.+.+|.+
T Consensus 218 a~~~r~~~~~~n~f~~la~~~~ni~l~~lIGlvf~lal~~~w---~st~~a~tivlvlLflr~pL~s~vgilP~l~~Aqv 294 (546)
T COG4615 218 AQEYRHHIIRANTFHLLAVNWSNIMLLGLIGLVFWLALSLGW---ASTNVAATIVLVLLFLRTPLLSAVGILPTLLTAQV 294 (546)
T ss_pred hHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc---chhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHH
Confidence 222222222222221111122233333333444444332211 12223333334445566788888889999999999
Q ss_pred HHHHHHHHhccCcccccccccCCCCCCCcccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHH
Q 001438 351 AAYPIFEMIERDTMSKASSKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLI 430 (1077)
Q Consensus 351 s~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l 430 (1077)
|.++|.++-..++..+-+.++ ..++ =..||++||.|.|+... .-+..||++|++||++-|+|.|||||||++++|
T Consensus 295 A~~kiakle~~~~~a~~~~~q--~~p~-~~~lelrnvrfay~~~~--FhvgPiNl~ikrGelvFliG~NGsGKST~~~LL 369 (546)
T COG4615 295 AFNKIAKLELAPYKADFPRPQ--AFPD-WKTLELRNVRFAYQDNA--FHVGPINLTIKRGELVFLIGGNGSGKSTLAMLL 369 (546)
T ss_pred HHHHHHHhhcCCccccCCCCC--cCCc-ccceeeeeeeeccCccc--ceecceeeEEecCcEEEEECCCCCcHHHHHHHH
Confidence 999999876543322211111 1111 24699999999998542 457899999999999999999999999999999
Q ss_pred hcccCCCccEEEECCeeCCCCCHHHHhhheeEEccCCCcccccHHHHHhcCCCC-CCHHHHHHHHHHHhHHHHHhcCccc
Q 001438 431 ERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDD-ATMEEITRAAKLSEAMSFISNLPER 509 (1077)
Q Consensus 431 ~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~~-~~~~~~~~~~~~~~~~~~i~~l~~g 509 (1077)
.|+|.|++|+|++||++++.-+++++|+-++-|+-|-|||+.++ |.+. ++.+.+...++..++.... .+.+|
T Consensus 370 tGL~~PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll------~~e~~as~q~i~~~LqrLel~~kt-sl~d~ 442 (546)
T COG4615 370 TGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLL------GPEGKASPQLIEKWLQRLELAHKT-SLNDG 442 (546)
T ss_pred hcccCCCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhh------CCccCCChHHHHHHHHHHHHhhhh-cccCC
Confidence 99999999999999999999999999999999999999998754 3322 4555555444333222211 12222
Q ss_pred hhhhhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHH--hCCCeEEEEccCchhHhhcCE
Q 001438 510 FETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRV--MVGRTTVVVAHRLSTIRNADV 587 (1077)
Q Consensus 510 ~~t~~~~~g~~LSgGqkqri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~--~~~~t~i~vtH~~~~~~~~d~ 587 (1077)
-- ....||-|||+|+|+--|++-+.||++|||=-+--||.=++.+.+.+... ..|||++.||||-.+...|||
T Consensus 443 ~f-----s~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~YF~~ADr 517 (546)
T COG4615 443 RF-----SNLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYFIHADR 517 (546)
T ss_pred cc-----cccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCchhhhhHHH
Confidence 11 12469999999999999999999999999999999999999997766443 359999999999999999999
Q ss_pred EEEEECCEEEEe
Q 001438 588 IAVVQGRKIVKT 599 (1077)
Q Consensus 588 i~~l~~G~i~~~ 599 (1077)
++.|++|+++|.
T Consensus 518 ll~~~~G~~~e~ 529 (546)
T COG4615 518 LLEMRNGQLSEL 529 (546)
T ss_pred HHHHhcCceeec
Confidence 999999999975
No 56
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=2.8e-46 Score=376.23 Aligned_cols=228 Identities=33% Similarity=0.535 Sum_probs=191.7
Q ss_pred ccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHH---HH
Q 001438 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLK---WL 456 (1077)
Q Consensus 380 ~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~---~~ 456 (1077)
..|++++|+++|++ ..+++|+||+|++||+++|+||||||||||+++|.|+.+|++|+|.++|+++.+++.+ .+
T Consensus 7 ~~I~vr~v~~~fG~---~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~i 83 (263)
T COG1127 7 PLIEVRGVTKSFGD---RVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEI 83 (263)
T ss_pred ceEEEeeeeeecCC---EEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHH
Confidence 46999999999974 4699999999999999999999999999999999999999999999999999998864 56
Q ss_pred hhheeEEccCCCcccc-cHHHHHhcCCCCC---CHHHHHHHHHHHhHHHHHhcCccchhhh-hcCCCCCCChHHHHHHHH
Q 001438 457 RQQIGLVNQEPALFAT-TIRENILYGKDDA---TMEEITRAAKLSEAMSFISNLPERFETQ-VGERGIQLSGGQKQRIAI 531 (1077)
Q Consensus 457 r~~i~~v~Q~~~lf~~-ti~~ni~~~~~~~---~~~~~~~~~~~~~~~~~i~~l~~g~~t~-~~~~g~~LSgGqkqri~l 531 (1077)
|+++|+++|+..||+. ||+||+.|...++ ..+.+.+ ..+..+ + .- |+... ....+..||||+++|+||
T Consensus 84 r~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~-lv~~KL-~-~V----GL~~~~~~~~PsELSGGM~KRvaL 156 (263)
T COG1127 84 RKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRE-LVLMKL-E-LV----GLRGAAADLYPSELSGGMRKRVAL 156 (263)
T ss_pred HhheeEEeeccccccccchhHhhheehHhhccCCHHHHHH-HHHHHH-H-hc----CCChhhhhhCchhhcchHHHHHHH
Confidence 8899999999999987 9999999975322 2233222 222221 1 11 23322 223567899999999999
Q ss_pred HHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHhcC
Q 001438 532 SRAIVKNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISN 608 (1077)
Q Consensus 532 ARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 608 (1077)
|||++.||+|+++|||||+|||.+...+.+.|+++.+ +.|+|+|||+++.+.. |||++++.||+|+..|+++|+.+.
T Consensus 157 ARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~el~~s 236 (263)
T COG1127 157 ARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEELLAS 236 (263)
T ss_pred HHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCHHHHHhC
Confidence 9999999999999999999999999999999988754 8999999999999876 999999999999999999999987
Q ss_pred CCchHHHHH
Q 001438 609 PNSAYAALV 617 (1077)
Q Consensus 609 ~~~~~~~~~ 617 (1077)
++...++.+
T Consensus 237 d~P~v~qf~ 245 (263)
T COG1127 237 DDPWVRQFF 245 (263)
T ss_pred CCHHHHHHh
Confidence 555444443
No 57
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=2.1e-46 Score=393.29 Aligned_cols=214 Identities=36% Similarity=0.562 Sum_probs=187.6
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhe
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 460 (1077)
.++++|++|+|++ +++++|+||++++||+++|+||||||||||+++|+|+++|.+|+|.+||+++.+++.+++.+++
T Consensus 2 ~L~~~~ls~~y~~---~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~i 78 (258)
T COG1120 2 MLEVENLSFGYGG---KPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKL 78 (258)
T ss_pred eeEEEEEEEEECC---eeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhE
Confidence 4789999999974 4699999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEccCCCc-ccccHHHHHhcCCCC-------CCH---HHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHH
Q 001438 461 GLVNQEPAL-FATTIRENILYGKDD-------ATM---EEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRI 529 (1077)
Q Consensus 461 ~~v~Q~~~l-f~~ti~~ni~~~~~~-------~~~---~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri 529 (1077)
|||||++.. |.-||+|-+.+|+.. .+. +.+.++++..+..++ .......||||||||+
T Consensus 79 a~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~l-----------a~r~~~~LSGGerQrv 147 (258)
T COG1120 79 AYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHL-----------ADRPVDELSGGERQRV 147 (258)
T ss_pred EEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHH-----------hcCcccccChhHHHHH
Confidence 999999754 566999999999722 122 234445555544333 3344568999999999
Q ss_pred HHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEccCchhH-hhcCEEEEEECCEEEEecChhHHh
Q 001438 530 AISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTI-RNADVIAVVQGRKIVKTGSHEELI 606 (1077)
Q Consensus 530 ~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~-~~~d~i~~l~~G~i~~~g~~~~l~ 606 (1077)
.|||||+++|+||+||||||+||...+-++++.++++. +|+|+|+|.|+++.. +.||++++|++|+++.+|+|+|++
T Consensus 148 ~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evl 227 (258)
T COG1120 148 LIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVL 227 (258)
T ss_pred HHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhc
Confidence 99999999999999999999999999999999999875 489999999999976 569999999999999999999988
Q ss_pred cC
Q 001438 607 SN 608 (1077)
Q Consensus 607 ~~ 608 (1077)
..
T Consensus 228 T~ 229 (258)
T COG1120 228 TE 229 (258)
T ss_pred CH
Confidence 64
No 58
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=100.00 E-value=1.8e-45 Score=398.38 Aligned_cols=234 Identities=49% Similarity=0.807 Sum_probs=211.3
Q ss_pred EEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhee
Q 001438 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (1077)
Q Consensus 382 i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 461 (1077)
|+++|++++|++. +.++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|+.++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (237)
T cd03252 1 ITFEHVRFRYKPD-GPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVG 79 (237)
T ss_pred CEEEEEEEecCCC-CccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEE
Confidence 4789999999643 246899999999999999999999999999999999999999999999999998877778888999
Q ss_pred EEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccCCCE
Q 001438 462 LVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSI 541 (1077)
Q Consensus 462 ~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~p~i 541 (1077)
|+||++++|+.|++||+.++.+....+++.++++..++.+.++.+|.|+++..+.++.+||||||||++||||++.+|++
T Consensus 80 ~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~l 159 (237)
T cd03252 80 VVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRI 159 (237)
T ss_pred EEcCCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCE
Confidence 99999999999999999986544445556666666677788888999999988999999999999999999999999999
Q ss_pred EEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhhcCEEEEEECCEEEEecChhHHhcCCCchHHHHH
Q 001438 542 LLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAALV 617 (1077)
Q Consensus 542 lllDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 617 (1077)
+||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+..||++++|++|++++.|+++++.++ .+.|..++
T Consensus 160 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~-~~~~~~~~ 234 (237)
T cd03252 160 LIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAE-NGLYAYLY 234 (237)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEEcCHHHHHhc-cChHHHHH
Confidence 9999999999999999999999988778999999999999988999999999999999999999876 66676654
No 59
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=7.2e-43 Score=433.92 Aligned_cols=391 Identities=25% Similarity=0.367 Sum_probs=338.3
Q ss_pred hHHHHHhhcccchHHHHHHHHHHHHHhhHHhHHHHHHHHHHHhhccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 683 SAIKLYSMVRPDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYYMDWDTTQREVKKITILFCCAAVITVIVHAIEHLSF 762 (1077)
Q Consensus 683 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 762 (1077)
..++++++.+++++++..+.++.++........++..+.+++....... ........++++++.++..++.+++.+++
T Consensus 148 ~~~~l~~~~~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~iid~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 225 (711)
T TIGR00958 148 LLFRLLGLSGRDWPWLISAFVFLTLSSLGEMFIPFYTGRVIDTLGGDKG--PPALASAIFFMCLLSIASSVSAGLRGGSF 225 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888888888888888888888887777888888888876543211 11222233445556666777888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCccccccccCCchhHHHHHhhcHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHH
Q 001438 763 GIMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQNFGLVTASFVIAFILNWRI 842 (1077)
Q Consensus 763 ~~~~~~~~~~Lr~~l~~~llr~p~~FFD~~~~~~G~IlnR~s~D~~~i~~~l~~~l~~~~~~~~~~~~~i~i~~~~~w~l 842 (1077)
.+.+.++..++|.++|++++++|++||++ +++|+++||+++|++.+++.+...+..++..++.+++.+++++.++|++
T Consensus 226 ~~~~~~~~~~lr~~l~~~ll~~~~~~f~~--~~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~~~i~~~~~l~~~s~~l 303 (711)
T TIGR00958 226 NYTMARINLRIREDLFRSLLRQDLGFFDE--NKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSPRL 303 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHcC--CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 99999999999999999999999999995 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHcchHHHHHhcchHHHHHHHHHHhhhhhHHHHHHHHH
Q 001438 843 TLVVVATYPLIISGHISEKLFFQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRSFIRGQI 922 (1077)
Q Consensus 843 ~l~~l~~~Pl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Etl~Gi~tIrAf~~e~~~~~~f~~~~~~~~~~~~~~~~~ 922 (1077)
++++++..|+.++...+..++.++..++.++...+.+..+.|+++|++|||+|+.|+++.++|.+..++..+...+....
T Consensus 304 ~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 383 (711)
T TIGR00958 304 TMVTLINLPLVFLAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKRKALA 383 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998888888888888888888888888999999999999999999999999999999999988888877777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHcCCCC
Q 001438 923 AGIFYGISQFFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLALVPDLLKGNQMAASVFEVLDRKTQ 1002 (1077)
Q Consensus 923 ~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~ 1002 (1077)
.+........+......+++++|+.++..|.+++++++++..+......++..+.....+++++..+.+|++++++.+++
T Consensus 384 ~~~~~~~~~~~~~~~~~~il~~g~~lv~~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~ 463 (711)
T TIGR00958 384 YAGYLWTTSVLGMLIQVLVLYYGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPN 463 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 77777777777777788888999999999999999999999999999999999999999999999999999999998766
Q ss_pred ccCCCCcccccccccEEEeeeeeeCCCCCcccccccceeeeeCCCEEEEECCCCCCHHHHHHHHhhccCCCCCCC
Q 001438 1003 VIGDIGEELTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKA 1077 (1077)
Q Consensus 1003 ~~~~~~~~~~~~~G~I~f~nVsf~Y~~~~~~~VLk~vsl~I~~GekVaIVGrTGsGKSTLi~lL~Rfyd~~~G~i 1077 (1077)
.++.....+++.+|.|+|+||+|+||++++.+||+|+||+|+|||+||||||||||||||+++|+|+|+|++|+|
T Consensus 464 ~~~~~~~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I 538 (711)
T TIGR00958 464 IPLTGTLAPLNLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQV 538 (711)
T ss_pred CCCCCCCCCCCCCCeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEE
Confidence 543222222345789999999999997766679999999999999999999999999999999999999999986
No 60
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2e-45 Score=400.92 Aligned_cols=218 Identities=35% Similarity=0.554 Sum_probs=190.1
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhe
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 460 (1077)
.|+++|++++|++. .+++|+||+|++||+++++|||||||||||++|+|+.+|++|+|.|+|.+++++++++ +.|
T Consensus 3 ~i~l~~v~K~yg~~---~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~--R~i 77 (338)
T COG3839 3 ELELKNVRKSFGSF---EVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEK--RGI 77 (338)
T ss_pred EEEEeeeEEEcCCc---eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhH--CCE
Confidence 58999999999743 1899999999999999999999999999999999999999999999999999988876 579
Q ss_pred eEEccCCCcccc-cHHHHHhcCCCCC--C----HHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHH
Q 001438 461 GLVNQEPALFAT-TIRENILYGKDDA--T----MEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISR 533 (1077)
Q Consensus 461 ~~v~Q~~~lf~~-ti~~ni~~~~~~~--~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lAR 533 (1077)
|+|+|+..||+. ||+|||.|+.... . ++++.++++..++ +..+..++.+||||||||+||||
T Consensus 78 amVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l-----------~~lL~r~P~~LSGGQrQRVAlaR 146 (338)
T COG3839 78 AMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGL-----------EHLLNRKPLQLSGGQRQRVALAR 146 (338)
T ss_pred EEEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCC-----------hhHHhcCcccCChhhHHHHHHHH
Confidence 999999999986 9999999997432 2 3344444444433 33445567789999999999999
Q ss_pred HhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHhcCCC
Q 001438 534 AIVKNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISNPN 610 (1077)
Q Consensus 534 al~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~ 610 (1077)
||+++|+++|||||+|+||++.+..+...|+++.+ +.|+|.||||...+.. +|||.||++|+|.+.|++.|+..++.
T Consensus 147 AlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~P~ 226 (338)
T COG3839 147 ALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYERPA 226 (338)
T ss_pred HHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhCcc
Confidence 99999999999999999999999999999988753 7899999999987755 99999999999999999999998876
Q ss_pred chHH
Q 001438 611 SAYA 614 (1077)
Q Consensus 611 ~~~~ 614 (1077)
..|-
T Consensus 227 n~fV 230 (338)
T COG3839 227 NLFV 230 (338)
T ss_pred chhh
Confidence 5553
No 61
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.6e-45 Score=435.58 Aligned_cols=211 Identities=25% Similarity=0.470 Sum_probs=174.6
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCC--CccEEEECCeeCCCCCHHH-Hh
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEP--LSGEILLDGNNIKGLDLKW-LR 457 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~--~~G~i~~~g~~~~~~~~~~-~r 457 (1077)
.|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|.++...+... .|
T Consensus 5 ~l~~~nl~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~ 81 (506)
T PRK13549 5 LLEMKNITKTFGG---VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTER 81 (506)
T ss_pred eEEEeeeEEEeCC---eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHH
Confidence 4899999999963 3599999999999999999999999999999999999996 8999999999998776554 46
Q ss_pred hheeEEccCCCcccc-cHHHHHhcCCCC-----CCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHH
Q 001438 458 QQIGLVNQEPALFAT-TIRENILYGKDD-----ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAI 531 (1077)
Q Consensus 458 ~~i~~v~Q~~~lf~~-ti~~ni~~~~~~-----~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~l 531 (1077)
+.++||+|++.+|+. |++||+.++... .+.++..+. .... ++.+ |++........+||||||||++|
T Consensus 82 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~--~~~~---l~~~--~l~~~~~~~~~~LSgGqkqrv~l 154 (506)
T PRK13549 82 AGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLR--AQKL---LAQL--KLDINPATPVGNLGLGQQQLVEI 154 (506)
T ss_pred CCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHH--HHHH---HHHc--CCCCCcccchhhCCHHHHHHHHH
Confidence 779999999988875 999999886421 122221111 1122 2222 23333455667899999999999
Q ss_pred HHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHhh-cCEEEEEECCEEEEecC
Q 001438 532 SRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGS 601 (1077)
Q Consensus 532 ARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~ 601 (1077)
|||++.+|++|||||||++||+.+...+.+.|.++. +++|+|++||+++.+.. ||+|++|++|++++.|+
T Consensus 155 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~ 226 (506)
T PRK13549 155 AKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGTRP 226 (506)
T ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeecc
Confidence 999999999999999999999999999999998874 58899999999999865 99999999999987654
No 62
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=4.8e-45 Score=375.54 Aligned_cols=210 Identities=36% Similarity=0.539 Sum_probs=171.9
Q ss_pred EEEEeEEEEcCCCC-CcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHH---H-
Q 001438 382 IEFKDVSFCYPSRP-DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKW---L- 456 (1077)
Q Consensus 382 i~~~~v~~~y~~~~-~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~---~- 456 (1077)
++++|+++.|.... ...+|+++||+|++||+++|+||||||||||+++|.|+..|++|+|.++|+|+..++.+. +
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R 81 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR 81 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence 57899999996432 246899999999999999999999999999999999999999999999999999888543 4
Q ss_pred hhheeEEccCCCcccc-cHHHHHhcCC--CCCCHHHHHHHHHHHhHHHHHhcCccchhhhhc-CCCCCCChHHHHHHHHH
Q 001438 457 RQQIGLVNQEPALFAT-TIRENILYGK--DDATMEEITRAAKLSEAMSFISNLPERFETQVG-ERGIQLSGGQKQRIAIS 532 (1077)
Q Consensus 457 r~~i~~v~Q~~~lf~~-ti~~ni~~~~--~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~-~~g~~LSgGqkqri~lA 532 (1077)
|++||||+|+..|++. |++|||.++. ......+..++ ...+.+.+ |+..... ..+.+||||||||+|||
T Consensus 82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~--~~~l~~~l-----gl~~~~~~~~p~eLSGGqqQRVAIA 154 (226)
T COG1136 82 RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRA--AEELLEVL-----GLEDRLLKKKPSELSGGQQQRVAIA 154 (226)
T ss_pred HHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHH--HHHHHHhc-----CChhhhccCCchhcCHHHHHHHHHH
Confidence 4579999999999877 9999998642 11111111111 11111111 2322222 56789999999999999
Q ss_pred HHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEccCchhHhhcCEEEEEECCEEEE
Q 001438 533 RAIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRNADVIAVVQGRKIVK 598 (1077)
Q Consensus 533 Ral~~~p~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~~~~d~i~~l~~G~i~~ 598 (1077)
|||+.+|+|++.||||++||.++.+.|++.+.+.. .|+|+|+|||+......|||++.|+||++.+
T Consensus 155 RAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~~~~ 222 (226)
T COG1136 155 RALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIEE 222 (226)
T ss_pred HHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCeeee
Confidence 99999999999999999999999999999999874 4899999999999999999999999999543
No 63
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=1.9e-45 Score=403.20 Aligned_cols=220 Identities=37% Similarity=0.585 Sum_probs=190.4
Q ss_pred ccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhh
Q 001438 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQ 459 (1077)
Q Consensus 380 ~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~ 459 (1077)
..++++||+++|+ +..+++|+||+|++||+++++|||||||||+|++|+|+..|++|+|.++|+++.+++++ ++.
T Consensus 4 ~~l~i~~v~k~yg---~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~--kR~ 78 (352)
T COG3842 4 PALEIRNVSKSFG---DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPE--KRP 78 (352)
T ss_pred ceEEEEeeeeecC---CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh--hcc
Confidence 3699999999997 35699999999999999999999999999999999999999999999999999998776 457
Q ss_pred eeEEccCCCcccc-cHHHHHhcCCC-C--CCHH----HHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHH
Q 001438 460 IGLVNQEPALFAT-TIRENILYGKD-D--ATME----EITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAI 531 (1077)
Q Consensus 460 i~~v~Q~~~lf~~-ti~~ni~~~~~-~--~~~~----~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~l 531 (1077)
||+|+|+..||+- ||+|||.||.. . ...+ .+.+++++.++.+ .-..++.+|||||+||+||
T Consensus 79 ig~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~-----------~~~R~p~qLSGGQqQRVAL 147 (352)
T COG3842 79 IGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEG-----------FADRKPHQLSGGQQQRVAL 147 (352)
T ss_pred cceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchh-----------hhhhChhhhChHHHHHHHH
Confidence 9999999999986 99999999975 1 1222 3344444443332 3345677899999999999
Q ss_pred HHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEccCchhH-hhcCEEEEEECCEEEEecChhHHhcC
Q 001438 532 SRAIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTI-RNADVIAVVQGRKIVKTGSHEELISN 608 (1077)
Q Consensus 532 ARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~-~~~d~i~~l~~G~i~~~g~~~~l~~~ 608 (1077)
||||..+|++||||||+||||.+-+..++..++++. .|.|.|+|||+.+.. .-+|||.||++|+|.+.|+|+|+...
T Consensus 148 ARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~ 227 (352)
T COG3842 148 ARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYER 227 (352)
T ss_pred HHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhC
Confidence 999999999999999999999999999999988764 489999999999875 56999999999999999999999998
Q ss_pred CCchHHH
Q 001438 609 PNSAYAA 615 (1077)
Q Consensus 609 ~~~~~~~ 615 (1077)
|...|..
T Consensus 228 P~~~fVA 234 (352)
T COG3842 228 PATRFVA 234 (352)
T ss_pred cchHHHH
Confidence 7665543
No 64
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=2.1e-44 Score=393.76 Aligned_cols=240 Identities=31% Similarity=0.503 Sum_probs=215.4
Q ss_pred CCcccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHH
Q 001438 377 KLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWL 456 (1077)
Q Consensus 377 ~~~~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~ 456 (1077)
...+.|+++|++++|++. +..+|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|+++.+.+...+
T Consensus 15 ~~~~~i~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~ 93 (257)
T cd03288 15 GLGGEIKIHDLCVRYENN-LKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTL 93 (257)
T ss_pred cCCceEEEEEEEEEeCCC-CCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHH
Confidence 345789999999999743 2468999999999999999999999999999999999999999999999999988888888
Q ss_pred hhheeEEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhc
Q 001438 457 RQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIV 536 (1077)
Q Consensus 457 r~~i~~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~ 536 (1077)
|+.++|++|+|++|++|++||+..... ...+++.++.+..++.+.++.+|.|+++.+++.+.+||||||||++||||++
T Consensus 94 ~~~i~~v~q~~~l~~~tv~~nl~~~~~-~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~ 172 (257)
T cd03288 94 RSRLSIILQDPILFSGSIRFNLDPECK-CTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFV 172 (257)
T ss_pred hhhEEEECCCCcccccHHHHhcCcCCC-CCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHh
Confidence 999999999999999999999975432 2344566666667777888899999999999999999999999999999999
Q ss_pred cCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhhcCEEEEEECCEEEEecChhHHhcCCCchHHHH
Q 001438 537 KNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAAL 616 (1077)
Q Consensus 537 ~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~ 616 (1077)
++|+++||||||++||+++++.+.+.++++.+++|+|++||+++.+..||+|++|++|++++.|+++++.+...+.|..+
T Consensus 173 ~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~~~~~~~ 252 (257)
T cd03288 173 RKSSILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDGVFASL 252 (257)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHHhCCEEEEEECCEEEEeCCHHHHHhccchHHHHH
Confidence 99999999999999999999999999988777899999999999998899999999999999999999987656667666
Q ss_pred HH
Q 001438 617 VQ 618 (1077)
Q Consensus 617 ~~ 618 (1077)
+.
T Consensus 253 ~~ 254 (257)
T cd03288 253 VR 254 (257)
T ss_pred Hh
Confidence 53
No 65
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.9e-45 Score=366.29 Aligned_cols=216 Identities=36% Similarity=0.558 Sum_probs=185.5
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCC---HHHHh
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLD---LKWLR 457 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~---~~~~r 457 (1077)
.|+++|++..||+ ++.+|+||||+|++||+++|+||||||||||+++|.|+.+|++|+|.++|.++..++ .+.+|
T Consensus 3 ~i~~~nl~k~yp~--~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r 80 (258)
T COG3638 3 MIEVKNLSKTYPG--GHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLR 80 (258)
T ss_pred eEEEeeeeeecCC--CceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHH
Confidence 5899999999984 357999999999999999999999999999999999999999999999999998877 55678
Q ss_pred hheeEEccCCCcccc-cHHHHHhcCCCCC-----------CHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHH
Q 001438 458 QQIGLVNQEPALFAT-TIRENILYGKDDA-----------TMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQ 525 (1077)
Q Consensus 458 ~~i~~v~Q~~~lf~~-ti~~ni~~~~~~~-----------~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq 525 (1077)
+++|+++|++.|.+. |+.+|++.|+-.. +.++...|.. +++.+ |+......+..+|||||
T Consensus 81 ~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~---aLerv-----gi~~~A~qra~~LSGGQ 152 (258)
T COG3638 81 RDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALD---ALERV-----GILDKAYQRASTLSGGQ 152 (258)
T ss_pred HhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHH---HHHHc-----CcHHHHHHHhccCCcch
Confidence 899999999999876 9999999886321 2333222222 22222 33334455777999999
Q ss_pred HHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEccCchhHhh-cCEEEEEECCEEEEecCh
Q 001438 526 KQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSH 602 (1077)
Q Consensus 526 kqri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~ 602 (1077)
+||++|||||+++|+|+|-|||+++|||.+.+.+++.|++.. .|.|+|+.-|+++.+++ ||||+-|++|+|+.+|++
T Consensus 153 QQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfDg~~ 232 (258)
T COG3638 153 QQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDGPA 232 (258)
T ss_pred hHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEeCCh
Confidence 999999999999999999999999999999999999999874 68999999999999865 999999999999999999
Q ss_pred hHHh
Q 001438 603 EELI 606 (1077)
Q Consensus 603 ~~l~ 606 (1077)
+|+-
T Consensus 233 ~el~ 236 (258)
T COG3638 233 SELT 236 (258)
T ss_pred hhhh
Confidence 9963
No 66
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.8e-45 Score=374.44 Aligned_cols=199 Identities=35% Similarity=0.537 Sum_probs=166.6
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhe
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 460 (1077)
.+++++++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|.++... ...+
T Consensus 3 ~l~i~~v~~~f~~---~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p-----~~~~ 74 (248)
T COG1116 3 LLEIEGVSKSFGG---VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGP-----GPDI 74 (248)
T ss_pred eEEEEeeEEEeCc---eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCC-----CCCE
Confidence 4889999999975 4699999999999999999999999999999999999999999999999987443 3369
Q ss_pred eEEccCCCcccc-cHHHHHhcCCCCCC--HHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhcc
Q 001438 461 GLVNQEPALFAT-TIRENILYGKDDAT--MEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVK 537 (1077)
Q Consensus 461 ~~v~Q~~~lf~~-ti~~ni~~~~~~~~--~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~ 537 (1077)
+||+|++.||+= ||+||+.++.+... .++-.+ +.....+.+ |+...-+..+.+||||||||+||||||+.
T Consensus 75 ~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~--~a~~~L~~V-----gL~~~~~~~P~qLSGGMrQRVaiARAL~~ 147 (248)
T COG1116 75 GYVFQEDALLPWLTVLDNVALGLELRGKSKAEARE--RAKELLELV-----GLAGFEDKYPHQLSGGMRQRVAIARALAT 147 (248)
T ss_pred EEEeccCcccchhhHHhhheehhhccccchHhHHH--HHHHHHHHc-----CCcchhhcCccccChHHHHHHHHHHHHhc
Confidence 999999999986 99999999875321 111111 111222211 34344456678999999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEccCchhHhh-cCEEEEEECC
Q 001438 538 NPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQGR 594 (1077)
Q Consensus 538 ~p~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~~~-~d~i~~l~~G 594 (1077)
+|+|||||||++|||+.|+..+++.+.++. .++|+++|||+++..-. +|||++|.++
T Consensus 148 ~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~ 207 (248)
T COG1116 148 RPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNR 207 (248)
T ss_pred CCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCC
Confidence 999999999999999999999999998864 47999999999998655 9999999994
No 67
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=1.1e-44 Score=406.46 Aligned_cols=225 Identities=31% Similarity=0.574 Sum_probs=187.8
Q ss_pred EEEEeEEEEcCCCC-CcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHH---Hh
Q 001438 382 IEFKDVSFCYPSRP-DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKW---LR 457 (1077)
Q Consensus 382 i~~~~v~~~y~~~~-~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~---~r 457 (1077)
|+++|++++|++.. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++..++..+ .|
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r 81 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKAR 81 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 78999999996422 246999999999999999999999999999999999999999999999999998877554 57
Q ss_pred hheeEEccCCCccc-ccHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHH
Q 001438 458 QQIGLVNQEPALFA-TTIRENILYGKD--DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRA 534 (1077)
Q Consensus 458 ~~i~~v~Q~~~lf~-~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARa 534 (1077)
++|||+||++.+|+ .|++||+.++.. ..+.++..+ +..++.+.+ |+.......+.+||||||||++||||
T Consensus 82 ~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~--~v~e~l~~v-----gL~~~~~~~~~~LSgGqkQRV~IARA 154 (343)
T TIGR02314 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKR--KVTELLALV-----GLGDKHDSYPSNLSGGQKQRVAIARA 154 (343)
T ss_pred cCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHH--HHHHHHHHc-----CCchhhhCChhhCCHHHHHHHHHHHH
Confidence 78999999999996 599999988642 122222211 112222222 23333456677999999999999999
Q ss_pred hccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHhcCCCc
Q 001438 535 IVKNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISNPNS 611 (1077)
Q Consensus 535 l~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~ 611 (1077)
|+.+|++||||||||+||+.+.+.+.+.|+++.+ +.|+|+|||+++.+.. ||+|++|++|++++.|+++++..++..
T Consensus 155 L~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~~~p~~ 234 (343)
T TIGR02314 155 LASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFSHPKT 234 (343)
T ss_pred HHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHcCCCc
Confidence 9999999999999999999999999999998753 8999999999999865 999999999999999999999876554
Q ss_pred hH
Q 001438 612 AY 613 (1077)
Q Consensus 612 ~~ 613 (1077)
.+
T Consensus 235 ~~ 236 (343)
T TIGR02314 235 PL 236 (343)
T ss_pred HH
Confidence 44
No 68
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.2e-44 Score=389.29 Aligned_cols=231 Identities=56% Similarity=0.883 Sum_probs=208.0
Q ss_pred EEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhee
Q 001438 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (1077)
Q Consensus 382 i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 461 (1077)
|+++|++++|++. +.++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|+.++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (234)
T cd03251 1 VEFKNVTFRYPGD-GPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIG 79 (234)
T ss_pred CEEEEEEEEeCCC-CccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 4789999999743 235899999999999999999999999999999999999999999999999998777778888999
Q ss_pred EEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccCCCE
Q 001438 462 LVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSI 541 (1077)
Q Consensus 462 ~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~p~i 541 (1077)
|++|++.+|+.|++||+.++......++..+.++...+.++++.+|.|+++..+.++.+||||||||++||||++.+|++
T Consensus 80 ~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 159 (234)
T cd03251 80 LVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPI 159 (234)
T ss_pred EeCCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999987654455556666666677788888998999999999999999999999999999999999
Q ss_pred EEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhhcCEEEEEECCEEEEecChhHHhcCCCchHH
Q 001438 542 LLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYA 614 (1077)
Q Consensus 542 lllDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~ 614 (1077)
+||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+..||++++|++|++++.|+++++... .+.|+
T Consensus 160 llLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~-~~~~~ 231 (234)
T cd03251 160 LILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQ-GGVYA 231 (234)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEecCCeEeeeCCHHHHHHc-Ccchh
Confidence 9999999999999999999999988778999999999999988999999999999999999998765 44443
No 69
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=5.8e-42 Score=412.61 Aligned_cols=386 Identities=20% Similarity=0.314 Sum_probs=338.5
Q ss_pred HHHhhcccchHHHHHHHHHHHHHhhHHhHHHHHHHHHHHhhccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 686 KLYSMVRPDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYYMDWDTTQREVKKITILFCCAAVITVIVHAIEHLSFGIM 765 (1077)
Q Consensus 686 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 765 (1077)
.++....++|+.+.-.++.+++......+.|+....++|....... .+......+.+++.+++..+..++|.+.+.+.
T Consensus 144 ~f~~~~~~~~~~l~~v~~~sl~l~i~~l~~p~~~q~viD~Vl~~~~--~~tL~vl~ig~~~~~l~~~~l~~lr~~~~~~~ 221 (709)
T COG2274 144 WFIPLLFKYRRLLFEVLLASLLLQLLALATPLFSQIVIDKVLPDAS--RSTLTVLAIGLLLAALFEALLRLLRTYLIAHL 221 (709)
T ss_pred hHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555554444444455455455555666666665544221 23334445667777888889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHcCCccccccccCCchhHHHHHhhcHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 001438 766 GERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQNFGLVTASFVIAFILNWRITLV 845 (1077)
Q Consensus 766 ~~~~~~~Lr~~l~~~llr~p~~FFD~~~~~~G~IlnR~s~D~~~i~~~l~~~l~~~~~~~~~~~~~i~i~~~~~w~l~l~ 845 (1077)
+.|+...+-.+.|+|+++.|++||.. +++|++++|+. |.+.|++++.......+..+..++..+++|++++|+|+|+
T Consensus 222 ~~rld~~l~~~~~~hll~Lpl~~f~~--r~~Ge~~sR~~-el~~Ir~flt~~~l~~iiD~~~~~i~l~vm~~ys~~L~li 298 (709)
T COG2274 222 GKRLDLELSGRFFRHLLRLPLSYFEK--RSVGEIISRVR-ELEQIREFLTGSILTLIIDLLFALIFLAVMFLYSWKLTLI 298 (709)
T ss_pred HHHHhHHHHHHHHHHHHcCcHHHccC--CChhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999995 99999999975 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHcchHHHHHhcchHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 001438 846 VVATYPLIISGHISEKLFFQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRSFIRGQIAGI 925 (1077)
Q Consensus 846 ~l~~~Pl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Etl~Gi~tIrAf~~e~~~~~~f~~~~~~~~~~~~~~~~~~~~ 925 (1077)
+++.+|+.++...+...++++..++.-+..++.++...|++.|++|||+.+.|+++..++++...+..+..++.......
T Consensus 299 ~l~~~~l~~l~~~~~~~~l~~~~~~~~~~~a~~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~~~ 378 (709)
T COG2274 299 VLAAIPLNVLITLIFQPLLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKLALI 378 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 99999999999999999999988888888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHcCCCCccC
Q 001438 926 FYGISQFFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLALVPDLLKGNQMAASVFEVLDRKTQVIG 1005 (1077)
Q Consensus 926 ~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~ 1005 (1077)
...+..++......+++|+|+.++..+.+++|.++++.+.......|+..+.++..+++....+.+|+.++++.++|.+.
T Consensus 379 ~~~~~~~l~~l~~v~iL~~G~~lVl~~~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E~~~ 458 (709)
T COG2274 379 LNTIKSLLQQLSSVLILWFGAILVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQEG 458 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988665
Q ss_pred CC-CcccccccccEEEeeeeeeCCCCCcccccccceeeeeCCCEEEEECCCCCCHHHHHHHHhhccCCCCCCC
Q 001438 1006 DI-GEELTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKA 1077 (1077)
Q Consensus 1006 ~~-~~~~~~~~G~I~f~nVsf~Y~~~~~~~VLk~vsl~I~~GekVaIVGrTGsGKSTLi~lL~Rfyd~~~G~i 1077 (1077)
+. ....++.+|+|+|+||+|+|+++++ +||+|+||+|+|||+|||||+||||||||+.+|.|+|+|++|+|
T Consensus 459 ~~~~~~~~~~~g~I~~~nvsf~y~~~~~-~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I 530 (709)
T COG2274 459 DKTLIHLPKLQGEIEFENVSFRYGPDDP-PVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRI 530 (709)
T ss_pred ccccccccccCceEEEEEEEEEeCCCCc-chhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceE
Confidence 43 3455678999999999999987644 68999999999999999999999999999999999999999986
No 70
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.3e-44 Score=366.75 Aligned_cols=231 Identities=31% Similarity=0.505 Sum_probs=187.2
Q ss_pred cEEEEeEEEEcCCCC-CcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCC-HHHHhh
Q 001438 381 HIEFKDVSFCYPSRP-DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLD-LKWLRQ 458 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~-~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~-~~~~r~ 458 (1077)
.++++|+++.|+... ..++++||||+|++||++||+|+||||||||.++|+|+.+|++|+|.++|+++.... .+..++
T Consensus 3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~ 82 (252)
T COG1124 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYR 82 (252)
T ss_pred eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhcc
Confidence 488999999997542 124899999999999999999999999999999999999999999999998776543 346778
Q ss_pred heeEEccCCCc-c-c-ccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHh
Q 001438 459 QIGLVNQEPAL-F-A-TTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAI 535 (1077)
Q Consensus 459 ~i~~v~Q~~~l-f-~-~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal 535 (1077)
.|.+|+|||.- + + -||++-|.-+.......+.++. ..++.+.+ .+|.. ....++.+|||||+|||||||||
T Consensus 83 ~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~--i~~~L~~V-gL~~~---~l~R~P~eLSGGQ~QRiaIARAL 156 (252)
T COG1124 83 PVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQR--IAELLDQV-GLPPS---FLDRRPHELSGGQRQRIAIARAL 156 (252)
T ss_pred ceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHH--HHHHHHHc-CCCHH---HHhcCchhcChhHHHHHHHHHHh
Confidence 89999999963 3 3 3888877544322121111111 22233323 34443 34567889999999999999999
Q ss_pred ccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHhcCCCch
Q 001438 536 VKNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISNPNSA 612 (1077)
Q Consensus 536 ~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~~ 612 (1077)
.-+|++||||||||+||...+..|.+.+.++.+ +-|.|+|||+++.+.+ ||||+||++|+++|.++.+++...+...
T Consensus 157 ~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~~~~h~ 236 (252)
T COG1124 157 IPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLSHPSHP 236 (252)
T ss_pred ccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhhcCCccH
Confidence 999999999999999999999999999988865 5599999999999987 9999999999999999999999876677
Q ss_pred HHHHH
Q 001438 613 YAALV 617 (1077)
Q Consensus 613 ~~~~~ 617 (1077)
|.+..
T Consensus 237 ytr~L 241 (252)
T COG1124 237 YTREL 241 (252)
T ss_pred HHHHH
Confidence 76543
No 71
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.8e-44 Score=386.12 Aligned_cols=227 Identities=47% Similarity=0.791 Sum_probs=207.4
Q ss_pred ccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhh
Q 001438 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQ 459 (1077)
Q Consensus 380 ~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~ 459 (1077)
+.++++|++++|++. .++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+|+.
T Consensus 1 ~~l~~~~l~~~~~~~--~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (229)
T cd03254 1 GEIEFENVNFSYDEK--KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSM 78 (229)
T ss_pred CeEEEEEEEEecCCC--CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhh
Confidence 358999999999632 358999999999999999999999999999999999999999999999999988887888889
Q ss_pred eeEEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccCC
Q 001438 460 IGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNP 539 (1077)
Q Consensus 460 i~~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~p 539 (1077)
++|++|++.+|++|++||+.++.+....+++.++++..++.++++.+|.|+++.++....+||||||||++||||++.+|
T Consensus 79 i~~~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p 158 (229)
T cd03254 79 IGVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDP 158 (229)
T ss_pred EEEecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999876555556666777777777888899999999999999999999999999999999999
Q ss_pred CEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhhcCEEEEEECCEEEEecChhHHhcC
Q 001438 540 SILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISN 608 (1077)
Q Consensus 540 ~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 608 (1077)
+++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+..||++++|++|++++.|+.+++..+
T Consensus 159 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~~ 227 (229)
T cd03254 159 KILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLAK 227 (229)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEEeCCeEEEeCCHHHHHhh
Confidence 999999999999999999999999988778999999999999888999999999999999998887653
No 72
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.3e-44 Score=387.56 Aligned_cols=232 Identities=53% Similarity=0.818 Sum_probs=209.5
Q ss_pred EEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhee
Q 001438 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (1077)
Q Consensus 382 i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 461 (1077)
++++|++++|++. ..+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.+.+...+|+.++
T Consensus 1 l~~~~l~~~~~~~--~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~ 78 (236)
T cd03253 1 IEFENVTFAYDPG--RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIG 78 (236)
T ss_pred CEEEEEEEEeCCC--CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 4789999999632 35899999999999999999999999999999999999999999999999998888888888999
Q ss_pred EEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccCCCE
Q 001438 462 LVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSI 541 (1077)
Q Consensus 462 ~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~p~i 541 (1077)
|++|++.+|+.|++||+.++......+++..+++...+.+.+..+|.|+++.++.++.+||||||||++|||||+.+|++
T Consensus 79 ~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~l 158 (236)
T cd03253 79 VVPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPI 158 (236)
T ss_pred EECCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999987655555566666777777788889999999999999999999999999999999999999
Q ss_pred EEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhhcCEEEEEECCEEEEecChhHHhcCCCchHHHH
Q 001438 542 LLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAAL 616 (1077)
Q Consensus 542 lllDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~ 616 (1077)
+||||||++||+++.+.+.+.|.++.+++|+|++||+++.+..||++++|++|++++.|+.+++..+ ...|+.+
T Consensus 159 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~~~~~~~~~~-~~~~~~~ 232 (236)
T cd03253 159 LLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAK-GGLYAEM 232 (236)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEeeCCHHHHhhc-ccHHHHH
Confidence 9999999999999999999999887668999999999999988999999999999999999998764 4555444
No 73
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=3.7e-41 Score=437.28 Aligned_cols=220 Identities=25% Similarity=0.430 Sum_probs=186.0
Q ss_pred ccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhh
Q 001438 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQ 459 (1077)
Q Consensus 380 ~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~ 459 (1077)
..|+++|+++.|++. ++.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. +....|++
T Consensus 927 ~~L~I~nLsK~y~~~-~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~-~~~~~r~~ 1004 (2272)
T TIGR01257 927 PGVCVKNLVKIFEPS-GRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIET-NLDAVRQS 1004 (2272)
T ss_pred ceEEEEeEEEEecCC-CceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcc-hHHHHhhc
Confidence 469999999999632 3469999999999999999999999999999999999999999999999999864 45667889
Q ss_pred eeEEccCCCcccc-cHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhc
Q 001438 460 IGLVNQEPALFAT-TIRENILYGKD--DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIV 536 (1077)
Q Consensus 460 i~~v~Q~~~lf~~-ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~ 536 (1077)
+||+||++.+|+. |++|||.++.. ..+.++..+ +..+. ++.+ |++........+||||||||++||||++
T Consensus 1005 IG~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~--~v~~l---L~~v--gL~~~~~~~~~~LSGGqKQRLsLArALi 1077 (2272)
T TIGR01257 1005 LGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQL--EMEAM---LEDT--GLHHKRNEEAQDLSGGMQRKLSVAIAFV 1077 (2272)
T ss_pred EEEEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHH--HHHHH---HHHc--CCchhhcCChhhCCHHHHHHHHHHHHHH
Confidence 9999999999976 99999987532 112222211 11112 2222 3444456677899999999999999999
Q ss_pred cCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHhcC
Q 001438 537 KNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISN 608 (1077)
Q Consensus 537 ~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 608 (1077)
.+|+++|||||||+||+.+++.+.+.|++..+|+|+|++||+++.+.. ||||++|++|+++..|++++|.++
T Consensus 1078 ~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~~g~TIIltTHdmdea~~laDrI~iL~~GkL~~~Gs~~~Lk~~ 1150 (2272)
T TIGR01257 1078 GDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFLKNC 1150 (2272)
T ss_pred cCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHHHh
Confidence 999999999999999999999999999998789999999999999875 999999999999999999998654
No 74
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=100.00 E-value=4.4e-44 Score=387.78 Aligned_cols=227 Identities=68% Similarity=1.030 Sum_probs=204.8
Q ss_pred EEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhee
Q 001438 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (1077)
Q Consensus 382 i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 461 (1077)
++++|+++.|++..+.++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...++++++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 47899999997533346899999999999999999999999999999999999999999999999988777777788899
Q ss_pred EEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccCCCE
Q 001438 462 LVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSI 541 (1077)
Q Consensus 462 ~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~p~i 541 (1077)
|++|++.+|+.|++||+.++......++..+.++..++.+++..+|.|+++..+....+||||||||++||||++.+|++
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 160 (238)
T cd03249 81 LVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKI 160 (238)
T ss_pred EECCchhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999989999999987654445555556666667777888999999999999999999999999999999999999
Q ss_pred EEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhhcCEEEEEECCEEEEecChhHHhcC
Q 001438 542 LLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISN 608 (1077)
Q Consensus 542 lllDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 608 (1077)
+||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+..||++++|++|++++.|+.+++...
T Consensus 161 lllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 227 (238)
T cd03249 161 LLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQ 227 (238)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEEeCCHHHHhhc
Confidence 9999999999999999999999887678999999999999888999999999999999999888764
No 75
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=9.5e-45 Score=350.65 Aligned_cols=207 Identities=32% Similarity=0.509 Sum_probs=179.0
Q ss_pred EEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCH---HHHhh
Q 001438 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDL---KWLRQ 458 (1077)
Q Consensus 382 i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~---~~~r~ 458 (1077)
|+|+||++.|+.. .++|+|+||+|++||++-++||||||||||+++|.+...|++|+|.++|.|+..+.. .-+|+
T Consensus 2 I~f~~V~k~Y~~g--~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR 79 (223)
T COG2884 2 IRFENVSKAYPGG--REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRR 79 (223)
T ss_pred eeehhhhhhcCCC--chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhh
Confidence 7999999999865 569999999999999999999999999999999999999999999999999987764 46899
Q ss_pred heeEEccCCCcccc-cHHHHHhcCCCC--CC----HHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHH
Q 001438 459 QIGLVNQEPALFAT-TIRENILYGKDD--AT----MEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAI 531 (1077)
Q Consensus 459 ~i~~v~Q~~~lf~~-ti~~ni~~~~~~--~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~l 531 (1077)
+||+|+||..|... |+.||++|...- .. .+++.++++++++.+-...+ +.+||||||||++|
T Consensus 80 ~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~l-----------P~~LSGGEQQRvaI 148 (223)
T COG2884 80 QIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARAL-----------PSQLSGGEQQRVAI 148 (223)
T ss_pred eeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcC-----------ccccCchHHHHHHH
Confidence 99999999998765 999999987521 12 23344455555544444444 45899999999999
Q ss_pred HHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHhh-cCEEEEEECCEEEEecC
Q 001438 532 SRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGS 601 (1077)
Q Consensus 532 ARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~ 601 (1077)
|||++.+|++||-||||.+||+.....|++.+.++. .|.||++.||+.+.+.. --|++.+++|+++....
T Consensus 149 ARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~~ 220 (223)
T COG2884 149 ARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDES 220 (223)
T ss_pred HHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEeccc
Confidence 999999999999999999999999999999998874 69999999999999987 56999999999987543
No 76
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.5e-44 Score=434.74 Aligned_cols=224 Identities=25% Similarity=0.401 Sum_probs=177.9
Q ss_pred ccEEEEeEEEEcCCCC-CcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCC---------
Q 001438 380 GHIEFKDVSFCYPSRP-DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIK--------- 449 (1077)
Q Consensus 380 ~~i~~~~v~~~y~~~~-~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~--------- 449 (1077)
..|+++|++++|+... +.++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.++|+++.
T Consensus 11 ~~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~ 90 (623)
T PRK10261 11 DVLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIEL 90 (623)
T ss_pred ceEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEecccccccccc
Confidence 3699999999996421 246999999999999999999999999999999999999999999999997552
Q ss_pred -CCCHH---HHh-hheeEEccCC--Ccccc-cHHHHHhcCCC---CCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCC
Q 001438 450 -GLDLK---WLR-QQIGLVNQEP--ALFAT-TIRENILYGKD---DATMEEITRAAKLSEAMSFISNLPERFETQVGERG 518 (1077)
Q Consensus 450 -~~~~~---~~r-~~i~~v~Q~~--~lf~~-ti~~ni~~~~~---~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g 518 (1077)
+.+.. .+| ++||||+|+| .+++. |++||+.++.. ....++..+ +..++.+.+ .+++. +.......
T Consensus 91 ~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~--~~~~~l~~~-gL~~~-~~~~~~~~ 166 (623)
T PRK10261 91 SEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMV--EAKRMLDQV-RIPEA-QTILSRYP 166 (623)
T ss_pred ccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHH--HHHHHHHHC-CCCCh-hhHHhCCC
Confidence 12222 233 4799999998 56764 99999987531 112222111 111222222 23321 23456677
Q ss_pred CCCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-C-CCeEEEEccCchhHhh-cCEEEEEECCE
Q 001438 519 IQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-V-GRTTVVVAHRLSTIRN-ADVIAVVQGRK 595 (1077)
Q Consensus 519 ~~LSgGqkqri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~-~-~~t~i~vtH~~~~~~~-~d~i~~l~~G~ 595 (1077)
.+||||||||++|||||+.+|++|||||||++||+.+++.+.+.|+++. + |+|+|+|||+++.+.. ||||++|++|+
T Consensus 167 ~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~~G~ 246 (623)
T PRK10261 167 HQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGE 246 (623)
T ss_pred ccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEeeCCe
Confidence 8999999999999999999999999999999999999999999999874 3 8999999999999865 99999999999
Q ss_pred EEEecChhHHhc
Q 001438 596 IVKTGSHEELIS 607 (1077)
Q Consensus 596 i~~~g~~~~l~~ 607 (1077)
+++.|+++++..
T Consensus 247 i~~~g~~~~~~~ 258 (623)
T PRK10261 247 AVETGSVEQIFH 258 (623)
T ss_pred ecccCCHHHhhc
Confidence 999999887753
No 77
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.8e-44 Score=373.91 Aligned_cols=210 Identities=29% Similarity=0.523 Sum_probs=179.8
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhe
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 460 (1077)
.|+++|++++|.++ ++|+||||+|++|++++|+||||||||||+|+|+|+++|.+|+|.++|.+.++... +.+|
T Consensus 4 ~i~v~nl~v~y~~~---~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~---~~~I 77 (254)
T COG1121 4 MIEVENLTVSYGNR---PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRK---RLRI 77 (254)
T ss_pred EEEEeeeEEEECCE---eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccccccccc---CCeE
Confidence 58999999999743 49999999999999999999999999999999999999999999999987765432 3579
Q ss_pred eEEccCC---CcccccHHHHHhcCCCCC----------CHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHH
Q 001438 461 GLVNQEP---ALFATTIRENILYGKDDA----------TMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQ 527 (1077)
Q Consensus 461 ~~v~Q~~---~lf~~ti~~ni~~~~~~~----------~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkq 527 (1077)
|||||.. |-|+-||+|-+.+|.... +.+++.++++.++..++. ......|||||+|
T Consensus 78 gYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~-----------~r~i~~LSGGQ~Q 146 (254)
T COG1121 78 GYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLR-----------DRQIGELSGGQKQ 146 (254)
T ss_pred EEcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhh-----------CCcccccCcHHHH
Confidence 9999965 568999999999985211 235666677766655432 2344579999999
Q ss_pred HHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHh-hcCEEEEEECCEEEEecChhHH
Q 001438 528 RIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIR-NADVIAVVQGRKIVKTGSHEEL 605 (1077)
Q Consensus 528 ri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l 605 (1077)
|+.|||||+++|++|+|||||+|+|+.++..+.+.|++++ +|+||++||||++.+. ++|+|+.|++ +++..|++++.
T Consensus 147 RV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln~-~~~~~G~~~~~ 225 (254)
T COG1121 147 RVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLNR-HLIASGPPEEV 225 (254)
T ss_pred HHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEcC-eeEeccChhhc
Confidence 9999999999999999999999999999999999999986 4999999999999886 4999999855 78889999998
Q ss_pred hcC
Q 001438 606 ISN 608 (1077)
Q Consensus 606 ~~~ 608 (1077)
.+.
T Consensus 226 ~~~ 228 (254)
T COG1121 226 LTE 228 (254)
T ss_pred cCH
Confidence 763
No 78
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=3.4e-44 Score=343.35 Aligned_cols=209 Identities=36% Similarity=0.568 Sum_probs=184.9
Q ss_pred EEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhee
Q 001438 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (1077)
Q Consensus 382 i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 461 (1077)
+.+++|.|+|...+ =..+++|++||++||+||||||||||+++|+|+..|.+|+|.++|+|....++.+ +-++
T Consensus 2 l~L~~V~~~y~~~~-----~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~--RPVS 74 (231)
T COG3840 2 LALDDVRFSYGHLP-----MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAE--RPVS 74 (231)
T ss_pred ccccceEEeeCcce-----EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCccc--CChh
Confidence 56789999997543 2588999999999999999999999999999999999999999999988766543 4599
Q ss_pred EEccCCCcccc-cHHHHHhcCCCC------CCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHH
Q 001438 462 LVNQEPALFAT-TIRENILYGKDD------ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRA 534 (1077)
Q Consensus 462 ~v~Q~~~lf~~-ti~~ni~~~~~~------~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARa 534 (1077)
.++||..||.- ||.+||.+|... ...+++..++...++.++.+++|. +||||||||+||||+
T Consensus 75 mlFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~-----------~LSGGqRQRvALARc 143 (231)
T COG3840 75 MLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPG-----------ELSGGQRQRVALARC 143 (231)
T ss_pred hhhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCcc-----------ccCchHHHHHHHHHH
Confidence 99999999987 999999999732 234567777888888777777774 799999999999999
Q ss_pred hccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHhcC
Q 001438 535 IVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISN 608 (1077)
Q Consensus 535 l~~~p~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 608 (1077)
++++-+|++||||+|+|||.-+.++...+.++. ++.|+++|||+++.+.. +|+++++++|+|.++|+.+++...
T Consensus 144 lvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~~ 220 (231)
T COG3840 144 LVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSG 220 (231)
T ss_pred HhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhcc
Confidence 999999999999999999999999999988874 57899999999999865 999999999999999999999875
No 79
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=1.4e-43 Score=379.51 Aligned_cols=220 Identities=35% Similarity=0.551 Sum_probs=202.3
Q ss_pred ccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhh
Q 001438 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQ 459 (1077)
Q Consensus 380 ~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~ 459 (1077)
+.++++|++++|+.. +.++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+|+.
T Consensus 1 ~~l~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 79 (221)
T cd03244 1 GDIEFKNVSLRYRPN-LPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSR 79 (221)
T ss_pred CcEEEEEEEEecCCC-CcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhh
Confidence 358999999999743 2469999999999999999999999999999999999999999999999999988888888999
Q ss_pred eeEEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccCC
Q 001438 460 IGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNP 539 (1077)
Q Consensus 460 i~~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~p 539 (1077)
++|++|++.+++.|++||+.+... ...+++.++++..++.+++..+|.|+++..++.+.+||||||||++||||++.+|
T Consensus 80 i~~~~q~~~l~~~tv~enl~~~~~-~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p 158 (221)
T cd03244 80 ISIIPQDPVLFSGTIRSNLDPFGE-YSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKS 158 (221)
T ss_pred EEEECCCCccccchHHHHhCcCCC-CCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCC
Confidence 999999999999999999986543 4566777777777888889999999999999999999999999999999999999
Q ss_pred CEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhhcCEEEEEECCEEEEecC
Q 001438 540 SILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGS 601 (1077)
Q Consensus 540 ~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~~d~i~~l~~G~i~~~g~ 601 (1077)
+++||||||++||+.+++.+.+.|+++.+++|+|++||+++.+..||++++|++|++++.|+
T Consensus 159 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 159 KILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220 (221)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCeEEecCC
Confidence 99999999999999999999999998877899999999999998899999999999998875
No 80
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-43 Score=424.66 Aligned_cols=213 Identities=24% Similarity=0.398 Sum_probs=175.1
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHH-hhh
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWL-RQQ 459 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~-r~~ 459 (1077)
.++++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+.... +++
T Consensus 5 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 81 (510)
T PRK09700 5 YISMAGIGKSFGP---VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLG 81 (510)
T ss_pred eEEEeeeEEEcCC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCC
Confidence 4899999999963 358999999999999999999999999999999999999999999999999987776543 457
Q ss_pred eeEEccCCCcccc-cHHHHHhcCCCC----C-----CHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHH
Q 001438 460 IGLVNQEPALFAT-TIRENILYGKDD----A-----TMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRI 529 (1077)
Q Consensus 460 i~~v~Q~~~lf~~-ti~~ni~~~~~~----~-----~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri 529 (1077)
++|++|++.+++. |++||+.++... . ..++..+ +.....+. + |+.........+||||||||+
T Consensus 82 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~---~--gl~~~~~~~~~~LSgG~~qrv 154 (510)
T PRK09700 82 IGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRV--RAAMMLLR---V--GLKVDLDEKVANLSISHKQML 154 (510)
T ss_pred eEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHH--HHHHHHHH---c--CCCCCcccchhhCCHHHHHHH
Confidence 9999999988876 999999876421 0 1111111 11222222 2 222234455678999999999
Q ss_pred HHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChh
Q 001438 530 AISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHE 603 (1077)
Q Consensus 530 ~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~ 603 (1077)
+|||||+.+|++|||||||++||+.+.+.+.+.|+++. +|+|+|+|||+++.+.. ||+|++|++|++++.|+++
T Consensus 155 ~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~ 230 (510)
T PRK09700 155 EIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVS 230 (510)
T ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEeeecchh
Confidence 99999999999999999999999999999999998874 48999999999999875 9999999999998776543
No 81
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.7e-44 Score=376.33 Aligned_cols=215 Identities=38% Similarity=0.631 Sum_probs=188.8
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCC-CCCHHHHhhh
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIK-GLDLKWLRQQ 459 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~-~~~~~~~r~~ 459 (1077)
.++++|++|+|+++ .++|+++||+|++||.++|+|+||||||||+++|.|+++|++|+|.++|.++. +.+...+|++
T Consensus 3 ~i~~~~l~~~y~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~ 80 (235)
T COG1122 3 MIEAENLSFRYPGR--KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQK 80 (235)
T ss_pred eEEEEEEEEEcCCC--ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcc
Confidence 47899999999865 57999999999999999999999999999999999999999999999999998 4788999999
Q ss_pred eeEEccCC--CcccccHHHHHhcCCCCC--CHHHH----HHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHH
Q 001438 460 IGLVNQEP--ALFATTIRENILYGKDDA--TMEEI----TRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAI 531 (1077)
Q Consensus 460 i~~v~Q~~--~lf~~ti~~ni~~~~~~~--~~~~~----~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~l 531 (1077)
+|||+|+| .+|..||.|.+.||..+. ..+++ .++++.++ +.........+||||||||+||
T Consensus 81 vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vg-----------l~~~~~r~p~~LSGGqkqRvaI 149 (235)
T COG1122 81 VGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVG-----------LEELLDRPPFNLSGGQKQRVAI 149 (235)
T ss_pred eEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcC-----------chhhccCCccccCCcceeeHHh
Confidence 99999999 688999999999997432 33332 23333333 2223455677999999999999
Q ss_pred HHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHhcC
Q 001438 532 SRAIVKNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISN 608 (1077)
Q Consensus 532 ARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 608 (1077)
|.+|+.+|++||||||||+||+...+.+.+.++++.+ ++|+|++||+++.+.. |||+++|++|+++.+|+++++.++
T Consensus 150 A~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~~ 229 (235)
T COG1122 150 AGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFND 229 (235)
T ss_pred hHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhhh
Confidence 9999999999999999999999999999999999863 5899999999999876 999999999999999999998865
No 82
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-43 Score=422.48 Aligned_cols=209 Identities=25% Similarity=0.400 Sum_probs=171.4
Q ss_pred EEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCH-HHHhhheeE
Q 001438 384 FKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDL-KWLRQQIGL 462 (1077)
Q Consensus 384 ~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~-~~~r~~i~~ 462 (1077)
++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+. ..+|++++|
T Consensus 1 ~~nl~~~~~~---~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 77 (491)
T PRK10982 1 MSNISKSFPG---VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISM 77 (491)
T ss_pred CCceEEEeCC---EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEE
Confidence 3689999963 358999999999999999999999999999999999999999999999999876554 345678999
Q ss_pred EccCCCcccc-cHHHHHhcCCCC-----CCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhc
Q 001438 463 VNQEPALFAT-TIRENILYGKDD-----ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIV 536 (1077)
Q Consensus 463 v~Q~~~lf~~-ti~~ni~~~~~~-----~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~ 536 (1077)
++|++.++.. |++||+.++... ...++..+ +.. +.++.+ |++........+||||||||++||||++
T Consensus 78 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~--~~~---~~l~~~--~l~~~~~~~~~~LSgGq~qrv~lA~al~ 150 (491)
T PRK10982 78 VHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYR--DTK---AIFDEL--DIDIDPRAKVATLSVSQMQMIEIAKAFS 150 (491)
T ss_pred EecccccccCCCHHHHhhcccccccccccCHHHHHH--HHH---HHHHHc--CCCCCccCchhhCCHHHHHHHHHHHHHH
Confidence 9999988765 999999876421 11121111 111 222222 3333445567789999999999999999
Q ss_pred cCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHhh-cCEEEEEECCEEEEecCh
Q 001438 537 KNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSH 602 (1077)
Q Consensus 537 ~~p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~ 602 (1077)
.+|++|||||||++||+.+.+.+.+.|+++. +|+|+|++||+++.+.. ||+|++|++|++++.|++
T Consensus 151 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~ 218 (491)
T PRK10982 151 YNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPL 218 (491)
T ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecCh
Confidence 9999999999999999999999999998864 58999999999998865 999999999999876543
No 83
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=3.6e-43 Score=421.72 Aligned_cols=210 Identities=25% Similarity=0.436 Sum_probs=170.2
Q ss_pred EEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCC--CccEEEECCeeCCCCCHHH-Hhh
Q 001438 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEP--LSGEILLDGNNIKGLDLKW-LRQ 458 (1077)
Q Consensus 382 i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~--~~G~i~~~g~~~~~~~~~~-~r~ 458 (1077)
++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|+++...+... .|+
T Consensus 2 l~i~~l~~~~~~---~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (500)
T TIGR02633 2 LEMKGIVKTFGG---VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERA 78 (500)
T ss_pred EEEEeEEEEeCC---eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhC
Confidence 689999999963 3589999999999999999999999999999999999987 7999999999998776544 456
Q ss_pred heeEEccCCCcccc-cHHHHHhcCCCC------CCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHH
Q 001438 459 QIGLVNQEPALFAT-TIRENILYGKDD------ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAI 531 (1077)
Q Consensus 459 ~i~~v~Q~~~lf~~-ti~~ni~~~~~~------~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~l 531 (1077)
+++||||++.+++. |++||+.++... ...++..+ +...+.+.+ .+++.. ......+||||||||++|
T Consensus 79 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~-~l~~~~---~~~~~~~LSgG~~qrv~i 152 (500)
T TIGR02633 79 GIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYL--RAKNLLREL-QLDADN---VTRPVGDYGGGQQQLVEI 152 (500)
T ss_pred CEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHH--HHHHHHHHc-CCCCCc---ccCchhhCCHHHHHHHHH
Confidence 79999999988876 999999886421 11222111 111222221 122211 123356899999999999
Q ss_pred HHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHhh-cCEEEEEECCEEEEec
Q 001438 532 SRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTG 600 (1077)
Q Consensus 532 ARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g 600 (1077)
||||+.+|++|||||||++||+.+.+.+.+.|+++. +|+|+|+|||+++.+.. ||+|++|++|++++.|
T Consensus 153 A~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~ 223 (500)
T TIGR02633 153 AKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVATK 223 (500)
T ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeec
Confidence 999999999999999999999999999999998864 57899999999999875 9999999999988543
No 84
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.5e-44 Score=371.55 Aligned_cols=223 Identities=34% Similarity=0.538 Sum_probs=181.8
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCe---eCCCCCHHHHh
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGN---NIKGLDLKWLR 457 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~---~~~~~~~~~~r 457 (1077)
.|+++|+++.|+. ..+++|||++|+.||.+|+.||||||||||+++|+|+..|++|.|.++|. |.++.. .-.
T Consensus 2 ~i~i~~~~~~~~~---~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~--~~~ 76 (345)
T COG1118 2 SIRINNVKKRFGA---FGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLA--VRD 76 (345)
T ss_pred ceeehhhhhhccc---ccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccc--hhh
Confidence 4788999999974 35899999999999999999999999999999999999999999999999 555533 233
Q ss_pred hheeEEccCCCcccc-cHHHHHhcCCCCC--CHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHH
Q 001438 458 QQIGLVNQEPALFAT-TIRENILYGKDDA--TMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRA 534 (1077)
Q Consensus 458 ~~i~~v~Q~~~lf~~-ti~~ni~~~~~~~--~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARa 534 (1077)
++||+|+|+..||.- ||.|||.||.+-. ...+.....+..++++.++ | +-.-...+.+||||||||+|||||
T Consensus 77 R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvq-L----~~la~ryP~QLSGGQrQRVALARA 151 (345)
T COG1118 77 RKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQ-L----EGLADRYPAQLSGGQRQRVALARA 151 (345)
T ss_pred cceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhc-c----cchhhcCchhcChHHHHHHHHHHH
Confidence 579999999999965 9999999997211 1111111222222222221 1 112234678999999999999999
Q ss_pred hccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEccCchhHh-hcCEEEEEECCEEEEecChhHHhcCCCc
Q 001438 535 IVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIR-NADVIAVVQGRKIVKTGSHEELISNPNS 611 (1077)
Q Consensus 535 l~~~p~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~~~~ 611 (1077)
|..+|++||||||++|||++.++.+..-|+++. -|.|+++|||+.+.+. .||||++|++|+|.+.|+++|+...|+.
T Consensus 152 LA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev~~~P~s 231 (345)
T COG1118 152 LAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVYDHPAS 231 (345)
T ss_pred hhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHHhcCCCc
Confidence 999999999999999999999999999888864 3899999999999875 5999999999999999999999988765
Q ss_pred hH
Q 001438 612 AY 613 (1077)
Q Consensus 612 ~~ 613 (1077)
.|
T Consensus 232 ~f 233 (345)
T COG1118 232 RF 233 (345)
T ss_pred cc
Confidence 54
No 85
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=100.00 E-value=3.7e-43 Score=375.95 Aligned_cols=219 Identities=43% Similarity=0.726 Sum_probs=197.3
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhe
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 460 (1077)
.++++|++++|++. +.++++|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|.++...+...+|+.+
T Consensus 2 ~l~~~~l~~~~~~~-~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (220)
T cd03245 2 RIEFRNVSFSYPNQ-EIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNI 80 (220)
T ss_pred eEEEEEEEEEcCCC-CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhE
Confidence 58999999999642 24589999999999999999999999999999999999999999999999998877777778899
Q ss_pred eEEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccCCC
Q 001438 461 GLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPS 540 (1077)
Q Consensus 461 ~~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~p~ 540 (1077)
+|++|++.+|+.|++||+.++......+++.+.++..++.+.++..|.|++|.+.+...+||||||||++||||++.+|+
T Consensus 81 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~ 160 (220)
T cd03245 81 GYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPP 160 (220)
T ss_pred EEeCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCC
Confidence 99999999998899999988754444556666677777777788899999999988899999999999999999999999
Q ss_pred EEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhhcCEEEEEECCEEEEec
Q 001438 541 ILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTG 600 (1077)
Q Consensus 541 illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~~d~i~~l~~G~i~~~g 600 (1077)
++||||||++||+.+...+.+.|+++.+++|+|++||+++.++.||++++|++|++++.|
T Consensus 161 llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 161 ILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220 (220)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEeCCeEeecC
Confidence 999999999999999999999999886668999999999988779999999999998754
No 86
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.1e-43 Score=393.51 Aligned_cols=222 Identities=26% Similarity=0.448 Sum_probs=186.5
Q ss_pred ccEEEEeEEEEcCCCC--CcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCC------
Q 001438 380 GHIEFKDVSFCYPSRP--DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGL------ 451 (1077)
Q Consensus 380 ~~i~~~~v~~~y~~~~--~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~------ 451 (1077)
..|+++|++|+|++.. ..++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|+++|+++.+.
T Consensus 20 ~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~ 99 (320)
T PRK13631 20 IILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHEL 99 (320)
T ss_pred ceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccccc
Confidence 4699999999997421 23599999999999999999999999999999999999999999999999998653
Q ss_pred ----------CHHHHhhheeEEccCC--CcccccHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHhcCccchh-hhhcC
Q 001438 452 ----------DLKWLRQQIGLVNQEP--ALFATTIRENILYGKD--DATMEEITRAAKLSEAMSFISNLPERFE-TQVGE 516 (1077)
Q Consensus 452 ----------~~~~~r~~i~~v~Q~~--~lf~~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~~~~ 516 (1077)
....+|++|+||+|+| .+|+.|++|||.++.. ..+.++..+. . .+.++.+ |++ ...++
T Consensus 100 ~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~--~---~~~l~~~--gL~~~~~~~ 172 (320)
T PRK13631 100 ITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKL--A---KFYLNKM--GLDDSYLER 172 (320)
T ss_pred cccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHH--H---HHHHHHc--CCChhHhcC
Confidence 3456788999999998 6899999999998742 1222222111 1 1223333 343 35677
Q ss_pred CCCCCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHh-hcCEEEEEECC
Q 001438 517 RGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIR-NADVIAVVQGR 594 (1077)
Q Consensus 517 ~g~~LSgGqkqri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~-~~d~i~~l~~G 594 (1077)
.+.+||||||||++|||||+.+|++|||||||++||+.+++.+.+.|.++. +++|+|+|||+++.+. .||+|++|++|
T Consensus 173 ~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~~G 252 (320)
T PRK13631 173 SPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKG 252 (320)
T ss_pred CcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECC
Confidence 889999999999999999999999999999999999999999999998764 5899999999999874 59999999999
Q ss_pred EEEEecChhHHhcC
Q 001438 595 KIVKTGSHEELISN 608 (1077)
Q Consensus 595 ~i~~~g~~~~l~~~ 608 (1077)
++++.|+++++...
T Consensus 253 ~i~~~g~~~~~~~~ 266 (320)
T PRK13631 253 KILKTGTPYEIFTD 266 (320)
T ss_pred EEEEeCCHHHHhcC
Confidence 99999999998764
No 87
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=8.1e-43 Score=420.81 Aligned_cols=222 Identities=26% Similarity=0.422 Sum_probs=174.7
Q ss_pred cEEEEeEEEEcCCC-CCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCC-----CccEEEECCeeCCCCCHH
Q 001438 381 HIEFKDVSFCYPSR-PDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEP-----LSGEILLDGNNIKGLDLK 454 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~-~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~-----~~G~i~~~g~~~~~~~~~ 454 (1077)
.++++|++++|++. ...++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|+++...+..
T Consensus 5 ~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~ 84 (529)
T PRK15134 5 LLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQ 84 (529)
T ss_pred eEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHH
Confidence 48999999999632 124699999999999999999999999999999999999987 799999999999877644
Q ss_pred H---Hh-hheeEEccCCC--ccc-ccHHHHHhcCC---CCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChH
Q 001438 455 W---LR-QQIGLVNQEPA--LFA-TTIRENILYGK---DDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGG 524 (1077)
Q Consensus 455 ~---~r-~~i~~v~Q~~~--lf~-~ti~~ni~~~~---~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgG 524 (1077)
. +| +++||++|+|. +++ .|+++|+.++. ...+.++..+ +...+.+.+ .+++ ..........+||||
T Consensus 85 ~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~-gl~~-~~~~~~~~~~~LSgG 160 (529)
T PRK15134 85 TLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARG--EILNCLDRV-GIRQ-AAKRLTDYPHQLSGG 160 (529)
T ss_pred HHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHH--HHHHHHHHC-CCCC-hHHHHhhCCcccCHH
Confidence 3 33 57999999985 444 49999986431 1112222111 111222222 2221 111235567799999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEccCchhHhh-cCEEEEEECCEEEEecC
Q 001438 525 QKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGS 601 (1077)
Q Consensus 525 qkqri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~ 601 (1077)
||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++. .++|+|+|||+++.+.. ||||++|++|++++.|+
T Consensus 161 e~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~~~g~ 240 (529)
T PRK15134 161 ERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCVEQNR 240 (529)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEEEeCC
Confidence 9999999999999999999999999999999999999998874 37999999999999865 99999999999999887
Q ss_pred hhHHh
Q 001438 602 HEELI 606 (1077)
Q Consensus 602 ~~~l~ 606 (1077)
++++.
T Consensus 241 ~~~~~ 245 (529)
T PRK15134 241 AATLF 245 (529)
T ss_pred HHHHh
Confidence 76553
No 88
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=8.4e-43 Score=417.89 Aligned_cols=211 Identities=25% Similarity=0.419 Sum_probs=173.1
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHH-Hhhh
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKW-LRQQ 459 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~-~r~~ 459 (1077)
.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .+++
T Consensus 4 ~i~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 80 (501)
T PRK10762 4 LLQLKGIDKAFPG---VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAG 80 (501)
T ss_pred eEEEeeeEEEeCC---eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 4899999999963 35899999999999999999999999999999999999999999999999987655444 3567
Q ss_pred eeEEccCCCcccc-cHHHHHhcCCCC------CCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHH
Q 001438 460 IGLVNQEPALFAT-TIRENILYGKDD------ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAIS 532 (1077)
Q Consensus 460 i~~v~Q~~~lf~~-ti~~ni~~~~~~------~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lA 532 (1077)
++|++|++.+++. |++||+.++... .+.++..+ +.... ++.+ |+.........+||||||||++||
T Consensus 81 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~--~~~~~---l~~~--~l~~~~~~~~~~LSgG~~qrv~la 153 (501)
T PRK10762 81 IGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYA--EADKL---LARL--NLRFSSDKLVGELSIGEQQMVEIA 153 (501)
T ss_pred EEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHH--HHHHH---HHHc--CCCCCccCchhhCCHHHHHHHHHH
Confidence 9999999988875 999999886421 11121111 11122 2222 222233455678999999999999
Q ss_pred HHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHhh-cCEEEEEECCEEEEecC
Q 001438 533 RAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGS 601 (1077)
Q Consensus 533 Ral~~~p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~ 601 (1077)
|||+.+|++|||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+
T Consensus 154 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~ 224 (501)
T PRK10762 154 KVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAERE 224 (501)
T ss_pred HHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecC
Confidence 99999999999999999999999999999998874 57899999999999865 99999999999987653
No 89
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=5.2e-43 Score=422.01 Aligned_cols=210 Identities=26% Similarity=0.489 Sum_probs=166.1
Q ss_pred EEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhccc--CCCccEEEEC---------------
Q 001438 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFY--EPLSGEILLD--------------- 444 (1077)
Q Consensus 382 i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~--~~~~G~i~~~--------------- 444 (1077)
|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+. +|++|+|.++
T Consensus 1 l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~ 77 (520)
T TIGR03269 1 IEVKNLTKKFDG---KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSK 77 (520)
T ss_pred CEEEEEEEEECC---eEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccc
Confidence 578999999963 35899999999999999999999999999999999996 7999999997
Q ss_pred --------CeeCC-------CCC---HHHHhhheeEEccC-CCcccc-cHHHHHhcCCC--CCCHHHHHHHHHHHhHHHH
Q 001438 445 --------GNNIK-------GLD---LKWLRQQIGLVNQE-PALFAT-TIRENILYGKD--DATMEEITRAAKLSEAMSF 502 (1077)
Q Consensus 445 --------g~~~~-------~~~---~~~~r~~i~~v~Q~-~~lf~~-ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~ 502 (1077)
|.++. ..+ ...+|+.++|++|+ +.+|+. |++||+.++.. ....++..+ +..++
T Consensus 78 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~--~~~~~--- 152 (520)
T TIGR03269 78 VGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVG--RAVDL--- 152 (520)
T ss_pred cccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHH--HHHHH---
Confidence 33321 111 12456789999998 577765 99999987532 112222111 11122
Q ss_pred HhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEccCch
Q 001438 503 ISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLS 580 (1077)
Q Consensus 503 i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~ 580 (1077)
++.+ |++........+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++. .|+|+|+|||+++
T Consensus 153 l~~~--gl~~~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~ 230 (520)
T TIGR03269 153 IEMV--QLSHRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPE 230 (520)
T ss_pred HHHc--CChhhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH
Confidence 2222 33334456678999999999999999999999999999999999999999999998874 3799999999999
Q ss_pred hHhh-cCEEEEEECCEEEEecC
Q 001438 581 TIRN-ADVIAVVQGRKIVKTGS 601 (1077)
Q Consensus 581 ~~~~-~d~i~~l~~G~i~~~g~ 601 (1077)
.+.. ||+|++|++|++++.|+
T Consensus 231 ~~~~~~d~i~~l~~G~i~~~g~ 252 (520)
T TIGR03269 231 VIEDLSDKAIWLENGEIKEEGT 252 (520)
T ss_pred HHHHhcCEEEEEeCCEEeeecC
Confidence 9865 99999999999876543
No 90
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=100.00 E-value=2e-40 Score=401.42 Aligned_cols=383 Identities=17% Similarity=0.119 Sum_probs=312.3
Q ss_pred HHhhcccchHHHHHHHHHHHHHhhHHhHHHHHHHHHHHhhccCchhhHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 687 LYSMVRPDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYYMDWDTTQREVKKI--TILFCCAAVITVIVHAIEHLSFGI 764 (1077)
Q Consensus 687 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~ 764 (1077)
++++.+++++++..+.++.++........++.+..+++...... .....+ ...+.++.++..++.+++.++...
T Consensus 4 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (529)
T TIGR02868 4 ILPLLQPRTRRLVVAILLGALALGSAVALLGVSAWLISRAAEMP----PVLYLSVAAVAVRAFGIGRAVFRYLERLVGHD 79 (529)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677776666666666666666667777777776543210 011111 111223445566777788888889
Q ss_pred HHHHHHHHHHHHHHHHHHcCCccccccccCCchhHHHHHhhcHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 001438 765 MGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQNFGLVTASFVIAFILNWRITL 844 (1077)
Q Consensus 765 ~~~~~~~~Lr~~l~~~llr~p~~FFD~~~~~~G~IlnR~s~D~~~i~~~l~~~l~~~~~~~~~~~~~i~i~~~~~w~l~l 844 (1077)
.+.++..++|.++|+++++.|.+||++ +++|++++|+++|++.+++.+...+..++..++.+++.++++++++|++++
T Consensus 80 ~~~~~~~~lr~~~~~~ll~~~~~~~~~--~~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l 157 (529)
T TIGR02868 80 AALRSLGRLRVRVYDRLARLALAGRRR--FQTGDLLGRLGADVDALQDLYVRVIVPLVVALVVGSAAVAAIALLSVPAAL 157 (529)
T ss_pred HHHHHHHHHHHHHHHHhhccCcccccc--CChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 999999999999999999999999995 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHhhhhhHHHHHHHHhHHHHHHHcchHHHHHhcchHHHHHHHHHHhhhhhHHHHHHHHHH
Q 001438 845 VVVATYPLIISGHISE-KLFFQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRSFIRGQIA 923 (1077)
Q Consensus 845 ~~l~~~Pl~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Etl~Gi~tIrAf~~e~~~~~~f~~~~~~~~~~~~~~~~~~ 923 (1077)
++++.+|++.+..... .+..+...++.++...+....+.|+++|+++||+|+.|+++.++|.+..++..+...+.....
T Consensus 158 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (529)
T TIGR02868 158 VLAAGLLLAGFVAPLVSLRAARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEAADRELLAAERRAARAT 237 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9888878776554333 333344455566677888889999999999999999999999999999999988888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHcCCCCc
Q 001438 924 GIFYGISQFFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLALVPDLLKGNQMAASVFEVLDRKTQV 1003 (1077)
Q Consensus 924 ~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~ 1003 (1077)
+...++...+......+++|+|+.++..|.++++.+.++..+......++..+......++++..+.+|+.++++.+++.
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~ 317 (529)
T TIGR02868 238 GLGAAAQLLAAGLAVLGALWAGGPAVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRAAAERIEEVTGAKGPR 317 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 88888888888888888899999999999999999999988888888889889989999999999999999999876653
Q ss_pred cCCC---CcccccccccEEEeeeeeeCCCCCcccccccceeeeeCCCEEEEECCCCCCHHHHHHHHhhccCCCCCCC
Q 001438 1004 IGDI---GEELTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKA 1077 (1077)
Q Consensus 1004 ~~~~---~~~~~~~~G~I~f~nVsf~Y~~~~~~~VLk~vsl~I~~GekVaIVGrTGsGKSTLi~lL~Rfyd~~~G~i 1077 (1077)
+... +...++..|+|+|+||+|+||+++ +||+|+||+|+|||++|||||||||||||+++|.|+|+|++|+|
T Consensus 318 ~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~--~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I 392 (529)
T TIGR02868 318 PEGVVPAAGALGLGKPTLELRDLSFGYPGSP--PVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEV 392 (529)
T ss_pred CCCCCCCCcccCCCCceEEEEEEEEecCCCC--ceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEE
Confidence 3211 111223457899999999998643 48999999999999999999999999999999999999999986
No 91
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=1.2e-42 Score=416.23 Aligned_cols=209 Identities=24% Similarity=0.315 Sum_probs=173.3
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhe
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 460 (1077)
.|+++|++++|++. .+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.+
T Consensus 3 ~l~~~~l~~~~~~~---~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i 79 (490)
T PRK10938 3 SLQISQGTFRLSDT---KTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLV 79 (490)
T ss_pred eEEEEeEEEEcCCe---eecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHh
Confidence 38999999999642 489999999999999999999999999999999999999999999999888776666777789
Q ss_pred eEEccCCCc--c-------cccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHH
Q 001438 461 GLVNQEPAL--F-------ATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAI 531 (1077)
Q Consensus 461 ~~v~Q~~~l--f-------~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~l 531 (1077)
+|++|++.+ + ..|++||+.++. ...+++.+++ + .+ |++........+||||||||++|
T Consensus 80 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l------~---~~--~l~~~~~~~~~~LSgG~~qrv~l 146 (490)
T PRK10938 80 SDEWQRNNTDMLSPGEDDTGRTTAEIIQDEV--KDPARCEQLA------Q---QF--GITALLDRRFKYLSTGETRKTLL 146 (490)
T ss_pred ceeccCcchhhcccchhhccccHHHhcccch--hHHHHHHHHH------H---Hc--CCHhhhhCCcccCCHHHHHHHHH
Confidence 999998753 2 348899876531 1111222222 2 22 23333455677899999999999
Q ss_pred HHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHH
Q 001438 532 SRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEEL 605 (1077)
Q Consensus 532 ARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 605 (1077)
|||++.+|++|||||||++||+.+.+.+.+.|+++. +|+|+|++||+++.+.. ||+|++|++|+++..|+++++
T Consensus 147 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 222 (490)
T PRK10938 147 CQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEI 222 (490)
T ss_pred HHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999998874 47899999999999866 999999999999988776554
No 92
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-42 Score=416.49 Aligned_cols=209 Identities=27% Similarity=0.454 Sum_probs=172.5
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCH-HHHhhh
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDL-KWLRQQ 459 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~-~~~r~~ 459 (1077)
.++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+. ..+|++
T Consensus 4 ~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 80 (501)
T PRK11288 4 YLSFDGIGKTFPG---VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAG 80 (501)
T ss_pred eEEEeeeEEEECC---EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCC
Confidence 4899999999964 358999999999999999999999999999999999999999999999999875543 456778
Q ss_pred eeEEccCCCcccc-cHHHHHhcCCCC-----CCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHH
Q 001438 460 IGLVNQEPALFAT-TIRENILYGKDD-----ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISR 533 (1077)
Q Consensus 460 i~~v~Q~~~lf~~-ti~~ni~~~~~~-----~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lAR 533 (1077)
|+|++|++.+++. |++||+.++... ...++..+ +.... ++.+ |++........+||||||||++|||
T Consensus 81 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~--~~~~~---l~~~--~l~~~~~~~~~~LSgGq~qrv~lar 153 (501)
T PRK11288 81 VAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNY--EAREQ---LEHL--GVDIDPDTPLKYLSIGQRQMVEIAK 153 (501)
T ss_pred EEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHH--HHHHH---HHHc--CCCCCcCCchhhCCHHHHHHHHHHH
Confidence 9999999998876 999999986421 11222111 11122 2222 2222334566789999999999999
Q ss_pred HhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHhh-cCEEEEEECCEEEEe
Q 001438 534 AIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKT 599 (1077)
Q Consensus 534 al~~~p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~ 599 (1077)
|++.+|+++||||||++||+.+.+.+.+.|+++. +|+|+|+|||+++.+.. ||+|++|++|++++.
T Consensus 154 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~ 221 (501)
T PRK11288 154 ALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVAT 221 (501)
T ss_pred HHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEee
Confidence 9999999999999999999999999999998874 58999999999999865 999999999998753
No 93
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7e-43 Score=395.46 Aligned_cols=223 Identities=30% Similarity=0.500 Sum_probs=185.8
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhe
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 460 (1077)
.++++|++++|++ +..+|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.+.+.. ++.|
T Consensus 3 ~l~i~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~--~r~i 78 (356)
T PRK11650 3 GLKLQAVRKSYDG--KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPA--DRDI 78 (356)
T ss_pred EEEEEeEEEEeCC--CCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 4899999999942 24589999999999999999999999999999999999999999999999999877654 4689
Q ss_pred eEEccCCCcccc-cHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhcc
Q 001438 461 GLVNQEPALFAT-TIRENILYGKDD--ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVK 537 (1077)
Q Consensus 461 ~~v~Q~~~lf~~-ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~ 537 (1077)
|||+|++.+|+. |++|||.|+... .+.++..+ +...+ ++.+ |++........+||||||||++|||||+.
T Consensus 79 g~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~--~~~~~---l~~~--gL~~~~~~~~~~LSgGq~QRvalARAL~~ 151 (356)
T PRK11650 79 AMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEE--RVAEA---ARIL--ELEPLLDRKPRELSGGQRQRVAMGRAIVR 151 (356)
T ss_pred EEEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHH--HHHHH---HHHc--CChhHhhCChhhCCHHHHHHHHHHHHHhc
Confidence 999999999975 999999987532 12222211 11111 1111 33444556677999999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEccCchhHh-hcCEEEEEECCEEEEecChhHHhcCCCchHH
Q 001438 538 NPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIR-NADVIAVVQGRKIVKTGSHEELISNPNSAYA 614 (1077)
Q Consensus 538 ~p~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~ 614 (1077)
+|++||||||||+||+.+++.+.+.|+++.+ +.|+|+|||+++.+. .||+|++|++|++++.|+++++.+++...|.
T Consensus 152 ~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~~p~~~~~ 231 (356)
T PRK11650 152 EPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEKPASTFV 231 (356)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHhCCccHHH
Confidence 9999999999999999999999999988753 799999999999875 5999999999999999999999887654443
No 94
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=100.00 E-value=7e-43 Score=375.27 Aligned_cols=219 Identities=50% Similarity=0.840 Sum_probs=194.2
Q ss_pred CcccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHh
Q 001438 378 LSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLR 457 (1077)
Q Consensus 378 ~~~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r 457 (1077)
..+.++++|++++|+++.+.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+....+
T Consensus 8 ~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 87 (226)
T cd03248 8 LKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLH 87 (226)
T ss_pred cCceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHH
Confidence 45679999999999753234689999999999999999999999999999999999999999999999998877777778
Q ss_pred hheeEEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhcc
Q 001438 458 QQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVK 537 (1077)
Q Consensus 458 ~~i~~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~ 537 (1077)
++++|++|++.+|+.|++||+.++.......+..+........++++.+|.|+++.+++++.+||||||||++||||+++
T Consensus 88 ~~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~ 167 (226)
T cd03248 88 SKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIR 167 (226)
T ss_pred hhEEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhc
Confidence 89999999999999999999988754444444444444445567788888889888999999999999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhhcCEEEEEECCEE
Q 001438 538 NPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKI 596 (1077)
Q Consensus 538 ~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~~d~i~~l~~G~i 596 (1077)
+|+++||||||++||+++.+.+.+.|+++.+++|+|++||+++.+..||+|++|++|++
T Consensus 168 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~i 226 (226)
T cd03248 168 NPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226 (226)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEecCCcC
Confidence 99999999999999999999999999988777999999999999988999999999974
No 95
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.7e-43 Score=393.80 Aligned_cols=223 Identities=31% Similarity=0.514 Sum_probs=186.2
Q ss_pred ccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhh
Q 001438 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQ 459 (1077)
Q Consensus 380 ~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~ 459 (1077)
..|+++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||+++.+.+.. +++
T Consensus 5 ~~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~ 79 (351)
T PRK11432 5 NFVVLKNITKRFGS---NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQ--QRD 79 (351)
T ss_pred cEEEEEeEEEEECC---eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCC
Confidence 36899999999963 3589999999999999999999999999999999999999999999999999876543 568
Q ss_pred eeEEccCCCcccc-cHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhc
Q 001438 460 IGLVNQEPALFAT-TIRENILYGKDD--ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIV 536 (1077)
Q Consensus 460 i~~v~Q~~~lf~~-ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~ 536 (1077)
||||+|++.+|+. |++|||.|+... ...++..+. ...+.+.+ |+.......+.+||||||||++|||||+
T Consensus 80 ig~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~--v~~~l~~~-----gl~~~~~r~~~~LSgGq~QRVaLARaL~ 152 (351)
T PRK11432 80 ICMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQR--VKEALELV-----DLAGFEDRYVDQISGGQQQRVALARALI 152 (351)
T ss_pred EEEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHH--HHHHHHHc-----CCchhhcCChhhCCHHHHHHHHHHHHHH
Confidence 9999999999976 999999987531 122222111 11111111 2233345567899999999999999999
Q ss_pred cCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEccCchhHh-hcCEEEEEECCEEEEecChhHHhcCCCchH
Q 001438 537 KNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIR-NADVIAVVQGRKIVKTGSHEELISNPNSAY 613 (1077)
Q Consensus 537 ~~p~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~ 613 (1077)
.+|++||||||||+||+.+++.+.+.|+++.+ ++|+|+|||+.+.+. .||+|++|++|++++.|+++++..++...|
T Consensus 153 ~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~~p~~~~ 232 (351)
T PRK11432 153 LKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQPASRF 232 (351)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCchH
Confidence 99999999999999999999999999988753 899999999999875 599999999999999999999988766544
Q ss_pred H
Q 001438 614 A 614 (1077)
Q Consensus 614 ~ 614 (1077)
.
T Consensus 233 ~ 233 (351)
T PRK11432 233 M 233 (351)
T ss_pred H
Confidence 3
No 96
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9.8e-43 Score=376.31 Aligned_cols=217 Identities=35% Similarity=0.555 Sum_probs=181.6
Q ss_pred EEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCH---HHHhh
Q 001438 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDL---KWLRQ 458 (1077)
Q Consensus 382 i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~---~~~r~ 458 (1077)
++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+|+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (235)
T cd03261 1 IELRGLTKSFGG---RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRR 77 (235)
T ss_pred CeEEEEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhc
Confidence 478999999963 358999999999999999999999999999999999999999999999999887654 56788
Q ss_pred heeEEccCCCcccc-cHHHHHhcCCC---CCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHH
Q 001438 459 QIGLVNQEPALFAT-TIRENILYGKD---DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRA 534 (1077)
Q Consensus 459 ~i~~v~Q~~~lf~~-ti~~ni~~~~~---~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARa 534 (1077)
.++|+||++.+|+. |++||+.++.. ..+.++..+. ...+.+. + |+.........+||||||||++||||
T Consensus 78 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~--~~~~l~~---~--~l~~~~~~~~~~LSgG~~qrv~ia~a 150 (235)
T cd03261 78 RMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREI--VLEKLEA---V--GLRGAEDLYPAELSGGMKKRVALARA 150 (235)
T ss_pred ceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHH--HHHHHHH---c--CCchhhcCChhhCCHHHHHHHHHHHH
Confidence 89999999999986 99999987632 1222222211 1112222 2 23333455667899999999999999
Q ss_pred hccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHhcC
Q 001438 535 IVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISN 608 (1077)
Q Consensus 535 l~~~p~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 608 (1077)
++.+|+++||||||++||+.+++.+.+.|+++. .++|+|+|||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 151 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 227 (235)
T cd03261 151 LALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRAS 227 (235)
T ss_pred HhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHHcCC
Confidence 999999999999999999999999999998874 37999999999998865 999999999999999999998754
No 97
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=2.1e-41 Score=442.50 Aligned_cols=207 Identities=22% Similarity=0.264 Sum_probs=169.2
Q ss_pred cccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhccc----CCCccEEEECCeeCCCCCHHHHhhheeEEccCCCcccc
Q 001438 397 VAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFY----EPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFAT 472 (1077)
Q Consensus 397 ~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~----~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ 472 (1077)
+.+|+|+|+++++||+++|+||||||||||+++|+|.. .|.+|+|.+||+++.+.. ...|+.++||+|++.+++.
T Consensus 74 ~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~-~~~r~~i~yv~Q~d~~~~~ 152 (1394)
T TIGR00956 74 FDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIK-KHYRGDVVYNAETDVHFPH 152 (1394)
T ss_pred ceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHH-hhcCceeEEeccccccCCC
Confidence 46899999999999999999999999999999999986 579999999999886543 3456779999999988876
Q ss_pred -cHHHHHhcCCC---------CCCHHHHHHHHHHHhHHHHHhcCccchhhhhcC-CCCCCChHHHHHHHHHHHhccCCCE
Q 001438 473 -TIRENILYGKD---------DATMEEITRAAKLSEAMSFISNLPERFETQVGE-RGIQLSGGQKQRIAISRAIVKNPSI 541 (1077)
Q Consensus 473 -ti~~ni~~~~~---------~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~-~g~~LSgGqkqri~lARal~~~p~i 541 (1077)
||+||+.|+.. ..+.++..+.. .....+.+ ++.+-.+|.+|+ ....||||||||++|||||+.+|+|
T Consensus 153 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~l-gL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~v 230 (1394)
T TIGR00956 153 LTVGETLDFAARCKTPQNRPDGVSREEYAKHI-ADVYMATY-GLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKI 230 (1394)
T ss_pred CCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHH-HHHHHHHc-CcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCE
Confidence 99999988521 11222211110 01122222 455666788875 5678999999999999999999999
Q ss_pred EEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEccCc-hhH-hhcCEEEEEECCEEEEecChhHHh
Q 001438 542 LLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRL-STI-RNADVIAVVQGRKIVKTGSHEELI 606 (1077)
Q Consensus 542 lllDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~vtH~~-~~~-~~~d~i~~l~~G~i~~~g~~~~l~ 606 (1077)
++|||||++||+.+...+.+.|+++. .|+|+|+++|++ +.+ +.+|+|++|++|+++..|+++++.
T Consensus 231 lllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~ 299 (1394)
T TIGR00956 231 QCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAK 299 (1394)
T ss_pred EEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHHH
Confidence 99999999999999999999999875 389999999997 455 459999999999999999998874
No 98
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=100.00 E-value=6.3e-43 Score=394.04 Aligned_cols=212 Identities=34% Similarity=0.512 Sum_probs=179.2
Q ss_pred cccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHH----hhheeEEccCCCcccc
Q 001438 397 VAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWL----RQQIGLVNQEPALFAT 472 (1077)
Q Consensus 397 ~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~----r~~i~~v~Q~~~lf~~ 472 (1077)
+.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++...+..++ |++++||+|++++|+.
T Consensus 6 ~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~ 85 (363)
T TIGR01186 6 KKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPH 85 (363)
T ss_pred ceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCC
Confidence 358999999999999999999999999999999999999999999999999999888777 7789999999999985
Q ss_pred -cHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCcCC
Q 001438 473 -TIRENILYGKDD--ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATS 549 (1077)
Q Consensus 473 -ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~p~illlDEpts 549 (1077)
|++|||.++... ...++..+ +...+ ++.+ |++...+..+.+||||||||++|||||+.+|+|+|||||||
T Consensus 86 ~TV~eNi~~~~~~~~~~~~~~~~--~~~~~---l~~v--gL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~s 158 (363)
T TIGR01186 86 MTILQNTSLGPELLGWPEQERKE--KALEL---LKLV--GLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFS 158 (363)
T ss_pred CCHHHHHHHHHHHcCCCHHHHHH--HHHHH---HHhc--CCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 999999986432 12222111 11111 1111 34455677788999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHh--CCCeEEEEccCchhHh-hcCEEEEEECCEEEEecChhHHhcCCCchHHH
Q 001438 550 ALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIR-NADVIAVVQGRKIVKTGSHEELISNPNSAYAA 615 (1077)
Q Consensus 550 ~lD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~ 615 (1077)
+||+.+++.+++.+.++. .++|+|+|||+++.+. .||+|++|++|++++.|++++++.++...|..
T Consensus 159 aLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~p~~~~~~ 227 (363)
T TIGR01186 159 ALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRNPANEYVE 227 (363)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhCcccHHHH
Confidence 999999999999998874 3899999999999864 59999999999999999999998876555543
No 99
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=1.2e-42 Score=393.23 Aligned_cols=221 Identities=29% Similarity=0.492 Sum_probs=186.9
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhe
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 460 (1077)
.++++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.+||+++.+.+.. ++.+
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~--~r~i 78 (353)
T TIGR03265 4 YLSIDNIRKRFGA---FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQ--KRDY 78 (353)
T ss_pred EEEEEEEEEEeCC---eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 4899999999974 3589999999999999999999999999999999999999999999999999876653 5689
Q ss_pred eEEccCCCcccc-cHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhcc
Q 001438 461 GLVNQEPALFAT-TIRENILYGKDD--ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVK 537 (1077)
Q Consensus 461 ~~v~Q~~~lf~~-ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~ 537 (1077)
|||+|++.+|+. |++||+.|+... .+.++..+ +..++ ++.+ |++......+.+||||||||++|||||+.
T Consensus 79 g~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~--~~~~~---l~~l--~L~~~~~~~~~~LSgGq~QRvaLARaL~~ 151 (353)
T TIGR03265 79 GIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAE--RVAEL---LDLV--GLPGSERKYPGQLSGGQQQRVALARALAT 151 (353)
T ss_pred EEEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHH--HHHHH---HHHc--CCCchhhCChhhCCHHHHHHHHHHHHHhc
Confidence 999999999975 999999987532 12222111 11122 2222 34445567788999999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEccCchhHh-hcCEEEEEECCEEEEecChhHHhcCCCchH
Q 001438 538 NPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIR-NADVIAVVQGRKIVKTGSHEELISNPNSAY 613 (1077)
Q Consensus 538 ~p~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~ 613 (1077)
+|+++|||||||+||+.+++.+.+.|+++.+ +.|+|+|||+++.+. .||+|++|++|++++.|+++++.+++...|
T Consensus 152 ~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~~p~~~~ 230 (353)
T TIGR03265 152 SPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRHPATPF 230 (353)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCCHH
Confidence 9999999999999999999999999988753 799999999999875 499999999999999999999998766554
No 100
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.8e-42 Score=392.02 Aligned_cols=225 Identities=35% Similarity=0.597 Sum_probs=186.4
Q ss_pred EEEEeEEEEcCCCC-CcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHH---Hh
Q 001438 382 IEFKDVSFCYPSRP-DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKW---LR 457 (1077)
Q Consensus 382 i~~~~v~~~y~~~~-~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~---~r 457 (1077)
|+++|++++|+... +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++..++..+ +|
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 81 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKAR 81 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 78999999997311 346999999999999999999999999999999999999999999999999998876544 47
Q ss_pred hheeEEccCCCccc-ccHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHH
Q 001438 458 QQIGLVNQEPALFA-TTIRENILYGKD--DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRA 534 (1077)
Q Consensus 458 ~~i~~v~Q~~~lf~-~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARa 534 (1077)
++|+|++|++.+|+ .|++||+.++.. ..+.++..+ +...+ ++.+ |++........+||||||||++||||
T Consensus 82 ~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~--~~~~~---l~~~--gL~~~~~~~~~~LSgGq~qRv~lAra 154 (343)
T PRK11153 82 RQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKA--RVTEL---LELV--GLSDKADRYPAQLSGGQKQRVAIARA 154 (343)
T ss_pred cCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHH--HHHHH---HHHc--CCchhhhCChhhCCHHHHHHHHHHHH
Confidence 78999999999987 599999987632 122222211 11112 2222 33344556677999999999999999
Q ss_pred hccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHhcCCCc
Q 001438 535 IVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISNPNS 611 (1077)
Q Consensus 535 l~~~p~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~ 611 (1077)
|+.+|++|||||||++||+.+.+.+.+.|+++. .|+|+|++||+++.+.. ||+|++|++|++++.|+++++..++..
T Consensus 155 L~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~ 234 (343)
T PRK11153 155 LASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFSHPKH 234 (343)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCc
Confidence 999999999999999999999999999999874 37999999999999875 999999999999999999999876443
Q ss_pred hH
Q 001438 612 AY 613 (1077)
Q Consensus 612 ~~ 613 (1077)
.+
T Consensus 235 ~~ 236 (343)
T PRK11153 235 PL 236 (343)
T ss_pred HH
Confidence 33
No 101
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.4e-42 Score=381.39 Aligned_cols=221 Identities=29% Similarity=0.522 Sum_probs=185.5
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhe
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 460 (1077)
.++++|++++|++....++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...+|+++
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 48999999999743224589999999999999999999999999999999999999999999999999887777888899
Q ss_pred eEEccCCC--cccccHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhc
Q 001438 461 GLVNQEPA--LFATTIRENILYGKDD--ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIV 536 (1077)
Q Consensus 461 ~~v~Q~~~--lf~~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~ 536 (1077)
+|++|+|. ++..|++|||.++... .+.++..+. ...+.+. + |++........+||||||||++||||++
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~--~~~~l~~---~--gL~~~~~~~~~~LSgGq~qrv~lAral~ 156 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKER--VNEALEL---V--GMQDFKEREPARLSGGQKQRVAIAGAVA 156 (279)
T ss_pred eEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHH--HHHHHHH---C--CCHhHhhCCcccCCHHHHHHHHHHHHHH
Confidence 99999984 4567999999987422 222222111 1112221 1 3334455667799999999999999999
Q ss_pred cCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEccCchhHhhcCEEEEEECCEEEEecChhHHhcC
Q 001438 537 KNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISN 608 (1077)
Q Consensus 537 ~~p~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 608 (1077)
.+|++|||||||++||+.+.+.+.+.|+++. .|+|+|++||+++.+..||+|++|++|++++.|+++++...
T Consensus 157 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13650 157 MRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSR 230 (279)
T ss_pred cCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHcC
Confidence 9999999999999999999999999999875 38999999999999878999999999999999999988754
No 102
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=1.2e-39 Score=396.20 Aligned_cols=389 Identities=16% Similarity=0.136 Sum_probs=315.5
Q ss_pred HHHHhhcccchHHHHHHHHHHHHHhhHHhHHHHHHHHHHHhhccCchh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 685 IKLYSMVRPDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYYMDWDT--TQREVKKITILFCCAAVITVIVHAIEHLSF 762 (1077)
Q Consensus 685 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 762 (1077)
.+++++.+++++.+..+.++.++..+.....++.+...++........ ..-........+.+++++..++.+++.++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (574)
T PRK11160 5 LPFLKLYKRHWFMLSLGILLAIVTLLASIGLLTLSGWFLSASAVAGLAGLYSFNYMLPAAGVRGAAIGRTAGRYGERLVS 84 (574)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677788888777777777777777777777777777654321100 000011112234445566777888888899
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCccccccccCCchhHHHHHhhcHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHH
Q 001438 763 GIMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQNFGLVTASFVIAFILNWRI 842 (1077)
Q Consensus 763 ~~~~~~~~~~Lr~~l~~~llr~p~~FFD~~~~~~G~IlnR~s~D~~~i~~~l~~~l~~~~~~~~~~~~~i~i~~~~~w~l 842 (1077)
...+.++..++|.++|+++++.|++||++ .++|++++|+++|++.++..+...+..++..++.++++++++++++|++
T Consensus 85 ~~~~~~~~~~lR~~l~~~l~~~~~~~~~~--~~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l 162 (574)
T PRK11160 85 HDATFRVLTHLRVFTFSKLLPLSPAGLAR--YRQGDLLNRLVADVDTLDHLYLRLISPLVAALVVILVLTIGLSFFDLTL 162 (574)
T ss_pred HHHHHHHHHHHHHHHHHHhhccChHhhcc--CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999995 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHhhhhhHHHHHHHHhHHHHHHHcchHHHHHhcchHHHHHHHHHHhhhhhHHHHHHHH
Q 001438 843 TLVVVATYPLIISG-HISEKLFFQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRSFIRGQ 921 (1077)
Q Consensus 843 ~l~~l~~~Pl~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Etl~Gi~tIrAf~~e~~~~~~f~~~~~~~~~~~~~~~~ 921 (1077)
+++++.++|+.++. ..+..+..++..++.++...+.+..+.|+++|+++||+|+.|+++.++|.+..++..+...+...
T Consensus 163 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 242 (574)
T PRK11160 163 ALTLGGILLLLLLLLPLLFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQLEQTEQQWLAAQRRQAN 242 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988888876543 34455666666777788888899999999999999999999999999999999999999888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH-HHHHHHHHHhhhhhHHHHHHHHHHHHHHHcCC
Q 001438 922 IAGIFYGISQFFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIV-TALAMGETLALVPDLLKGNQMAASVFEVLDRK 1000 (1077)
Q Consensus 922 ~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~ 1000 (1077)
..+...++...+.....++++++|+.++ .|.++.+.+++++.+... ...++..+......++++..+.+|+.++++.+
T Consensus 243 ~~~~~~~~~~~~~~~~~~~i~~~g~~~~-~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~ll~~~ 321 (574)
T PRK11160 243 LTGLSQALMILANGLTVVLMLWLAAGGV-GGNAQPGALIALFVFAALAAFEALMPVAGAFQHLGQVIASARRINEITEQK 321 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 8888888888888888888899999884 788899998887666533 34566777778889999999999999999987
Q ss_pred CCccCCCCcccccccccEEEeeeeeeCCCCCcccccccceeeeeCCCEEEEECCCCCCHHHHHHHHhhccCCCCCCC
Q 001438 1001 TQVIGDIGEELTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKA 1077 (1077)
Q Consensus 1001 ~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~~~~~VLk~vsl~I~~GekVaIVGrTGsGKSTLi~lL~Rfyd~~~G~i 1077 (1077)
++.+........+..|.|+|+||+|+||+. +.++|+|+||+|+|||++|||||||||||||+++|.|+|+|++|+|
T Consensus 322 ~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~-~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I 397 (574)
T PRK11160 322 PEVTFPTTSTAAADQVSLTLNNVSFTYPDQ-PQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEI 397 (574)
T ss_pred CCCCCCcccCCCCCCCeEEEEEEEEECCCC-CCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceE
Confidence 654322111122346899999999999754 2358999999999999999999999999999999999999999986
No 103
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-41 Score=410.12 Aligned_cols=208 Identities=21% Similarity=0.404 Sum_probs=165.2
Q ss_pred EEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhee
Q 001438 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (1077)
Q Consensus 382 i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 461 (1077)
|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. .+|+
T Consensus 2 l~i~~ls~~~~~---~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~ 67 (530)
T PRK15064 2 LSTANITMQFGA---KPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPN-----------ERLG 67 (530)
T ss_pred EEEEEEEEEeCC---cEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-----------CEEE
Confidence 789999999964 35999999999999999999999999999999999999999999999873 3599
Q ss_pred EEccCCCcccc-cHHHHHhcCCCCC----------------CHHH---HHHH----------HHHHhHHHHHhcCccchh
Q 001438 462 LVNQEPALFAT-TIRENILYGKDDA----------------TMEE---ITRA----------AKLSEAMSFISNLPERFE 511 (1077)
Q Consensus 462 ~v~Q~~~lf~~-ti~~ni~~~~~~~----------------~~~~---~~~~----------~~~~~~~~~i~~l~~g~~ 511 (1077)
|++|++.++.. |++||+.++.... ..+. +.+. .......+.++.+ |++
T Consensus 68 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--gl~ 145 (530)
T PRK15064 68 KLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGV--GIP 145 (530)
T ss_pred EEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhC--CCC
Confidence 99999988865 9999998753100 0000 0000 0001111223322 232
Q ss_pred hhh-cCCCCCCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhh-cCEEE
Q 001438 512 TQV-GERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIA 589 (1077)
Q Consensus 512 t~~-~~~g~~LSgGqkqri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~-~d~i~ 589 (1077)
... .....+||||||||++|||||+.+|++|||||||++||+++.+.+.+.|++ .+.|+|+|||+++.+.. ||+|+
T Consensus 146 ~~~~~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~~~tiiivsHd~~~~~~~~d~i~ 223 (530)
T PRK15064 146 EEQHYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE--RNSTMIIISHDRHFLNSVCTHMA 223 (530)
T ss_pred hhHhcCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh--CCCeEEEEeCCHHHHHhhcceEE
Confidence 212 235678999999999999999999999999999999999999999999874 47899999999999865 99999
Q ss_pred EEECCEEE-EecChhHHhc
Q 001438 590 VVQGRKIV-KTGSHEELIS 607 (1077)
Q Consensus 590 ~l~~G~i~-~~g~~~~l~~ 607 (1077)
+|++|+++ ..|++++.++
T Consensus 224 ~l~~g~i~~~~g~~~~~~~ 242 (530)
T PRK15064 224 DLDYGELRVYPGNYDEYMT 242 (530)
T ss_pred EEeCCEEEEecCCHHHHHH
Confidence 99999994 7888877653
No 104
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=100.00 E-value=1.5e-42 Score=373.08 Aligned_cols=214 Identities=37% Similarity=0.629 Sum_probs=176.5
Q ss_pred EEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhccc-----CCCccEEEECCeeCCCCC--HH
Q 001438 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFY-----EPLSGEILLDGNNIKGLD--LK 454 (1077)
Q Consensus 382 i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~-----~~~~G~i~~~g~~~~~~~--~~ 454 (1077)
|+++|++++|+++ ++|+|+||++++||+++|+||||||||||+++|+|++ +|++|+|.++|+++...+ ..
T Consensus 1 i~~~~l~~~~~~~---~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 77 (227)
T cd03260 1 IELRDLNVYYGDK---HALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVL 77 (227)
T ss_pred CEEEEEEEEcCCc---eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHH
Confidence 4789999999643 5899999999999999999999999999999999999 999999999999988766 55
Q ss_pred HHhhheeEEccCCCcccccHHHHHhcCCCCC---CHHHHHHHHHHHhHHHHHhcCccchhhhhcCC--CCCCChHHHHHH
Q 001438 455 WLRQQIGLVNQEPALFATTIRENILYGKDDA---TMEEITRAAKLSEAMSFISNLPERFETQVGER--GIQLSGGQKQRI 529 (1077)
Q Consensus 455 ~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~~~---~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~--g~~LSgGqkqri 529 (1077)
.+|++++|++|++.+|+.|++||+.++.... ..++..+. ...+ ++.+ |+....... +.+||||||||+
T Consensus 78 ~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~--~~~~---l~~~--~l~~~~~~~~~~~~LSgG~~qrv 150 (227)
T cd03260 78 ELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDER--VEEA---LRKA--ALWDEVKDRLHALGLSGGQQQRL 150 (227)
T ss_pred HHHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHH--HHHH---HHHc--CCChHHhccCCcccCCHHHHHHH
Confidence 6788999999999999779999998753211 11111111 1111 1111 222222333 479999999999
Q ss_pred HHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHH
Q 001438 530 AISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEEL 605 (1077)
Q Consensus 530 ~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 605 (1077)
+||||++.+|+++||||||++||+.+++.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 151 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 227 (227)
T cd03260 151 CLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQI 227 (227)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCcccC
Confidence 9999999999999999999999999999999999988655899999999998765 999999999999999987653
No 105
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.9e-42 Score=373.09 Aligned_cols=224 Identities=30% Similarity=0.500 Sum_probs=187.0
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccC---CCccEEEECCeeCCCCCHHHHh
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYE---PLSGEILLDGNNIKGLDLKWLR 457 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~---~~~G~i~~~g~~~~~~~~~~~r 457 (1077)
.|+++|+++.|++ .++|+|+||++++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.+.+....|
T Consensus 2 ~~~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~ 78 (246)
T PRK14269 2 IAKTTNLNLFYGK---KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALR 78 (246)
T ss_pred ceeeeeeEEEECC---EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHh
Confidence 3789999999974 358999999999999999999999999999999999984 6999999999999888777888
Q ss_pred hheeEEccCCCcccccHHHHHhcCCCC--C--CHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHH
Q 001438 458 QQIGLVNQEPALFATTIRENILYGKDD--A--TMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISR 533 (1077)
Q Consensus 458 ~~i~~v~Q~~~lf~~ti~~ni~~~~~~--~--~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lAR 533 (1077)
+.++|+||++.+|+.|++||+.++... . ..++. ..+.....+.+ .+++.+.+...+++.+||||||||++|||
T Consensus 79 ~~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~--~~~~~~~l~~~-~l~~~~~~~~~~~~~~LS~G~~qrv~lar 155 (246)
T PRK14269 79 KNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEE--EALVVDCLQKV-GLFEEVKDKLKQNALALSGGQQQRLCIAR 155 (246)
T ss_pred hhEEEEecCCccccccHHHHhhhHHhhcCcccChHHH--HHHHHHHHHHc-CCChhhhHHhcCCcccCCHHHHHHHHHHH
Confidence 899999999999999999999875311 0 01111 11112222222 23322234456678899999999999999
Q ss_pred HhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHh-hcCEEEEEECCEEEEecChhHHhcCCC
Q 001438 534 AIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIR-NADVIAVVQGRKIVKTGSHEELISNPN 610 (1077)
Q Consensus 534 al~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~~~ 610 (1077)
|++.+|+++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+. .||+|++|++|++++.|+++++...+.
T Consensus 156 al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~ 233 (246)
T PRK14269 156 ALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFENPK 233 (246)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHHHhCCC
Confidence 99999999999999999999999999999998877899999999999886 499999999999999999999876533
No 106
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.1e-42 Score=380.81 Aligned_cols=222 Identities=32% Similarity=0.550 Sum_probs=183.7
Q ss_pred EEEEeEEEEcCCCC--CcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCC--HHHHh
Q 001438 382 IEFKDVSFCYPSRP--DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLD--LKWLR 457 (1077)
Q Consensus 382 i~~~~v~~~y~~~~--~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~--~~~~r 457 (1077)
|+++|++++|++.. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+ ...+|
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (287)
T PRK13637 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIR 82 (287)
T ss_pred EEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHh
Confidence 78999999997421 136999999999999999999999999999999999999999999999999997754 35678
Q ss_pred hheeEEccCC--CcccccHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHH
Q 001438 458 QQIGLVNQEP--ALFATTIRENILYGKD--DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISR 533 (1077)
Q Consensus 458 ~~i~~v~Q~~--~lf~~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lAR 533 (1077)
++||||||+| .+|+.|++|||.++.. ..+.++..+.. ..+.+.+ .++ +.+.....+.+||||||||++|||
T Consensus 83 ~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~--~~~l~~~-gL~--~~~~~~~~~~~LSgGq~qrv~iAr 157 (287)
T PRK13637 83 KKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRV--KRAMNIV-GLD--YEDYKDKSPFELSGGQKRRVAIAG 157 (287)
T ss_pred hceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHH--HHHHHHc-CCC--chhhccCCcccCCHHHHHHHHHHH
Confidence 8999999998 5778899999988642 12333222211 1122211 121 113456677899999999999999
Q ss_pred HhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEccCchhHh-hcCEEEEEECCEEEEecChhHHhcC
Q 001438 534 AIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIR-NADVIAVVQGRKIVKTGSHEELISN 608 (1077)
Q Consensus 534 al~~~p~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 608 (1077)
||+.+|++|||||||++||+.+.+.+.+.|+++. .|+|+|++||+++.+. .||||++|++|++++.|+++++.+.
T Consensus 158 aL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 235 (287)
T PRK13637 158 VVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVFKE 235 (287)
T ss_pred HHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 9999999999999999999999999999999874 3899999999999885 5999999999999999999998654
No 107
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=3.5e-42 Score=390.89 Aligned_cols=222 Identities=34% Similarity=0.543 Sum_probs=185.8
Q ss_pred ccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhh
Q 001438 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQ 459 (1077)
Q Consensus 380 ~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~ 459 (1077)
..++++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.+.+.. ++.
T Consensus 13 ~~L~l~~l~~~~~~---~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~ 87 (375)
T PRK09452 13 PLVELRGISKSFDG---KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAE--NRH 87 (375)
T ss_pred ceEEEEEEEEEECC---eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHH--HCC
Confidence 45999999999963 3589999999999999999999999999999999999999999999999999876654 467
Q ss_pred eeEEccCCCcccc-cHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhc
Q 001438 460 IGLVNQEPALFAT-TIRENILYGKDD--ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIV 536 (1077)
Q Consensus 460 i~~v~Q~~~lf~~-ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~ 536 (1077)
++||+|++.+|+. ||+|||.|+... ....+..+ +.....+.+ |+.........+||||||||++|||||+
T Consensus 88 ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~--~~~~~l~~~-----~l~~~~~~~p~~LSgGq~QRVaLARaL~ 160 (375)
T PRK09452 88 VNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITP--RVMEALRMV-----QLEEFAQRKPHQLSGGQQQRVAIARAVV 160 (375)
T ss_pred EEEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHH--HHHHHHHHc-----CCchhhhCChhhCCHHHHHHHHHHHHHh
Confidence 9999999999976 999999987531 12222111 111111111 2333445566789999999999999999
Q ss_pred cCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEccCchhHh-hcCEEEEEECCEEEEecChhHHhcCCCchH
Q 001438 537 KNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIR-NADVIAVVQGRKIVKTGSHEELISNPNSAY 613 (1077)
Q Consensus 537 ~~p~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~ 613 (1077)
.+|++||||||||+||..+++.+.+.|+++.+ +.|+|+|||+.+.+. .||+|++|++|+|++.|+++++..++...|
T Consensus 161 ~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~~p~~~~ 240 (375)
T PRK09452 161 NKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEEPKNLF 240 (375)
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCcccHH
Confidence 99999999999999999999999999988753 899999999999875 599999999999999999999998766544
No 108
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.1e-42 Score=381.05 Aligned_cols=221 Identities=25% Similarity=0.499 Sum_probs=183.2
Q ss_pred EEEEeEEEEcCCCC--CcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCC----CCHHH
Q 001438 382 IEFKDVSFCYPSRP--DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKG----LDLKW 455 (1077)
Q Consensus 382 i~~~~v~~~y~~~~--~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~----~~~~~ 455 (1077)
|+++|++|+|+... .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|++||.++.. .....
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 81 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHH
Confidence 78999999997432 1258999999999999999999999999999999999999999999999999863 33567
Q ss_pred HhhheeEEccCC--CcccccHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHH
Q 001438 456 LRQQIGLVNQEP--ALFATTIRENILYGKDD--ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAI 531 (1077)
Q Consensus 456 ~r~~i~~v~Q~~--~lf~~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~l 531 (1077)
+|+++|||+|+| .+|+.|+.||+.|+... .+.++..+ +..+..+.+ .++ +........+||||||||++|
T Consensus 82 ~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~--~~~~~l~~~-~L~---~~~~~~~~~~LSgGqkqrvai 155 (288)
T PRK13643 82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEK--IAAEKLEMV-GLA---DEFWEKSPFELSGGQMRRVAI 155 (288)
T ss_pred HHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHH--HHHHHHHHc-CCC---hhhccCCcccCCHHHHHHHHH
Confidence 788999999998 78889999999987432 22222221 112222222 121 123456778999999999999
Q ss_pred HHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHh-hcCEEEEEECCEEEEecChhHHhcC
Q 001438 532 SRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIR-NADVIAVVQGRKIVKTGSHEELISN 608 (1077)
Q Consensus 532 ARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 608 (1077)
||||+.+|+++||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+. .||+|++|++|++++.|+++++...
T Consensus 156 A~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 234 (288)
T PRK13643 156 AGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVFQE 234 (288)
T ss_pred HHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHHcC
Confidence 999999999999999999999999999999998875 5899999999999885 5999999999999999999998753
No 109
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=3e-42 Score=390.16 Aligned_cols=222 Identities=28% Similarity=0.493 Sum_probs=186.3
Q ss_pred ccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCc--cEEEECCeeCCCCCHHHHh
Q 001438 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLS--GEILLDGNNIKGLDLKWLR 457 (1077)
Q Consensus 380 ~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~--G~i~~~g~~~~~~~~~~~r 457 (1077)
+.++++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++ |+|.++|+++.+.+. .+
T Consensus 4 ~~l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~--~~ 78 (362)
T TIGR03258 4 GGIRIDHLRVAYGA---NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPP--HK 78 (362)
T ss_pred eEEEEEEEEEEECC---eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCH--HH
Confidence 57999999999974 358999999999999999999999999999999999999999 999999999976654 35
Q ss_pred hheeEEccCCCcccc-cHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHH
Q 001438 458 QQIGLVNQEPALFAT-TIRENILYGKDD--ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRA 534 (1077)
Q Consensus 458 ~~i~~v~Q~~~lf~~-ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARa 534 (1077)
+.|+||+|++.+|+. |++|||.|+... ...++..+ +...+.+ .+ |++........+||||||||++||||
T Consensus 79 r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~--~v~~~l~---~~--gL~~~~~~~~~~LSgGq~QRvaLARA 151 (362)
T TIGR03258 79 RGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAE--RVADALK---LV--GLGDAAAHLPAQLSGGMQQRIAIARA 151 (362)
T ss_pred CCEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHH--HHHHHHH---hc--CCCchhhCChhhCCHHHHHHHHHHHH
Confidence 679999999999976 999999987421 22222221 1111222 11 33444566778999999999999999
Q ss_pred hccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC---CCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHhcCCC
Q 001438 535 IVKNPSILLLDEATSALDAESENSVQEALDRVMV---GRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISNPN 610 (1077)
Q Consensus 535 l~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~---~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~ 610 (1077)
|+.+|++||||||||+||+.+++.+.+.|+++.+ |.|+|+|||+++.+.. ||+|++|++|++++.|+++|+..++.
T Consensus 152 L~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~~~p~ 231 (362)
T TIGR03258 152 IAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYDAPA 231 (362)
T ss_pred HhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCcC
Confidence 9999999999999999999999999999988753 7899999999998755 99999999999999999999988765
Q ss_pred chH
Q 001438 611 SAY 613 (1077)
Q Consensus 611 ~~~ 613 (1077)
..|
T Consensus 232 ~~~ 234 (362)
T TIGR03258 232 DGF 234 (362)
T ss_pred cHH
Confidence 444
No 110
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=4e-41 Score=407.30 Aligned_cols=208 Identities=27% Similarity=0.380 Sum_probs=165.1
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhe
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 460 (1077)
.|+++|++++|++ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++. .+|
T Consensus 6 ~l~i~~l~~~y~~--~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~-----------~~i 72 (556)
T PRK11819 6 IYTMNRVSKVVPP--KKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPG-----------IKV 72 (556)
T ss_pred EEEEeeEEEEeCC--CCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-----------CEE
Confidence 5899999999962 246999999999999999999999999999999999999999999999752 369
Q ss_pred eEEccCCCcccc-cHHHHHhcCCCCC----------------CH----------HHHHHHHHH-------HhHHHHHhcC
Q 001438 461 GLVNQEPALFAT-TIRENILYGKDDA----------------TM----------EEITRAAKL-------SEAMSFISNL 506 (1077)
Q Consensus 461 ~~v~Q~~~lf~~-ti~~ni~~~~~~~----------------~~----------~~~~~~~~~-------~~~~~~i~~l 506 (1077)
|||||+|.+++. |++||+.++.... .. .++.+.+.. ....+.++.+
T Consensus 73 ~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 152 (556)
T PRK11819 73 GYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDAL 152 (556)
T ss_pred EEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhC
Confidence 999999999876 9999998753100 00 000000100 0111112221
Q ss_pred ccchhhhhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhh-c
Q 001438 507 PERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-A 585 (1077)
Q Consensus 507 ~~g~~t~~~~~g~~LSgGqkqri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~-~ 585 (1077)
|++ .......+||||||||++||||++.+|++|||||||++||+.+...+.+.|++.. .|+|+|||+++.+.. |
T Consensus 153 --gl~-~~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~--~tviiisHd~~~~~~~~ 227 (556)
T PRK11819 153 --RCP-PWDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYP--GTVVAVTHDRYFLDNVA 227 (556)
T ss_pred --CCC-cccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCC--CeEEEEeCCHHHHHhhc
Confidence 221 1345667899999999999999999999999999999999999999999998763 599999999999876 9
Q ss_pred CEEEEEECCEEE-EecChhHHh
Q 001438 586 DVIAVVQGRKIV-KTGSHEELI 606 (1077)
Q Consensus 586 d~i~~l~~G~i~-~~g~~~~l~ 606 (1077)
|+|++|++|+++ ..|+++++.
T Consensus 228 d~i~~l~~g~i~~~~g~~~~~~ 249 (556)
T PRK11819 228 GWILELDRGRGIPWEGNYSSWL 249 (556)
T ss_pred CeEEEEeCCEEEEecCCHHHHH
Confidence 999999999986 677777654
No 111
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=3.2e-41 Score=408.28 Aligned_cols=208 Identities=27% Similarity=0.389 Sum_probs=165.4
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhe
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 460 (1077)
.++++|++++|++ ++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++. .+|
T Consensus 4 ~i~~~nls~~~~~--~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~-----------~~i 70 (552)
T TIGR03719 4 IYTMNRVSKVVPP--KKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPG-----------IKV 70 (552)
T ss_pred EEEEeeEEEecCC--CCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-----------CEE
Confidence 5899999999962 235899999999999999999999999999999999999999999999752 369
Q ss_pred eEEccCCCcccc-cHHHHHhcCCCC-----------------CCH---------HHHHHHHHHHh-------HHHHHhcC
Q 001438 461 GLVNQEPALFAT-TIRENILYGKDD-----------------ATM---------EEITRAAKLSE-------AMSFISNL 506 (1077)
Q Consensus 461 ~~v~Q~~~lf~~-ti~~ni~~~~~~-----------------~~~---------~~~~~~~~~~~-------~~~~i~~l 506 (1077)
||++|+|++++. |++||+.++... ... +++.++++..+ ..+.++.+
T Consensus 71 ~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 150 (552)
T TIGR03719 71 GYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDAL 150 (552)
T ss_pred EEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhC
Confidence 999999999865 999999875311 000 11111111111 11112222
Q ss_pred ccchhhhhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhh-c
Q 001438 507 PERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-A 585 (1077)
Q Consensus 507 ~~g~~t~~~~~g~~LSgGqkqri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~-~ 585 (1077)
|++ .......+||||||||++||||++.+|++|||||||++||+.+.+.+.+.|++. +.|+|+|||+++.+.. |
T Consensus 151 --~l~-~~~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~--~~tvIiisHd~~~~~~~~ 225 (552)
T TIGR03719 151 --RCP-PWDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY--PGTVVAVTHDRYFLDNVA 225 (552)
T ss_pred --CCC-cccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC--CCeEEEEeCCHHHHHhhc
Confidence 221 124566789999999999999999999999999999999999999999999876 3699999999999876 9
Q ss_pred CEEEEEECCEEE-EecChhHHh
Q 001438 586 DVIAVVQGRKIV-KTGSHEELI 606 (1077)
Q Consensus 586 d~i~~l~~G~i~-~~g~~~~l~ 606 (1077)
|+|++|++|+++ ..|++++..
T Consensus 226 d~v~~l~~g~i~~~~g~~~~~~ 247 (552)
T TIGR03719 226 GWILELDRGRGIPWEGNYSSWL 247 (552)
T ss_pred CeEEEEECCEEEEecCCHHHHH
Confidence 999999999976 667777664
No 112
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7e-42 Score=374.00 Aligned_cols=229 Identities=28% Similarity=0.484 Sum_probs=185.7
Q ss_pred ccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCC-----CccEEEECCeeCCC--CC
Q 001438 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEP-----LSGEILLDGNNIKG--LD 452 (1077)
Q Consensus 380 ~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~-----~~G~i~~~g~~~~~--~~ 452 (1077)
..++++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++.. .+
T Consensus 6 ~~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 82 (254)
T PRK14273 6 AIIETENLNLFYTD---FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFD 82 (254)
T ss_pred ceEEEeeeEEEeCC---ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEeccccccc
Confidence 36999999999964 3589999999999999999999999999999999999997 48999999998853 33
Q ss_pred HHHHhhheeEEccCCCcccccHHHHHhcCCCC---CCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHH
Q 001438 453 LKWLRQQIGLVNQEPALFATTIRENILYGKDD---ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRI 529 (1077)
Q Consensus 453 ~~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~~---~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri 529 (1077)
...+|+.++|++|++.+|+.|++|||.++... ...++..+.+ ....+.+ .+.+++......++.+||||||||+
T Consensus 83 ~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~--~~~l~~~-~l~~~l~~~~~~~~~~LSgG~~qrv 159 (254)
T PRK14273 83 ILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIV--EQSLKKS-ALWNEVKDKLNTNALSLSGGQQQRL 159 (254)
T ss_pred HHHHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHH--HHHHHHh-CCchhhHHHHhCCcccCCHHHHHHH
Confidence 45678889999999999989999999876421 1111111111 1111111 1211112234456779999999999
Q ss_pred HHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHhcC
Q 001438 530 AISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISN 608 (1077)
Q Consensus 530 ~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 608 (1077)
+||||++.+|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++.++
T Consensus 160 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 239 (254)
T PRK14273 160 CIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDELFFN 239 (254)
T ss_pred HHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 9999999999999999999999999999999999998778999999999999865 999999999999999999999876
Q ss_pred CCchHH
Q 001438 609 PNSAYA 614 (1077)
Q Consensus 609 ~~~~~~ 614 (1077)
+...|.
T Consensus 240 ~~~~~~ 245 (254)
T PRK14273 240 PKNTKT 245 (254)
T ss_pred CCChHH
Confidence 554443
No 113
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=3.1e-42 Score=372.97 Aligned_cols=217 Identities=29% Similarity=0.526 Sum_probs=183.1
Q ss_pred EEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHH-hhhe
Q 001438 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWL-RQQI 460 (1077)
Q Consensus 382 i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~-r~~i 460 (1077)
++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+ ++.+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (236)
T cd03219 1 LEVRGLTKRFGG---LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGI 77 (236)
T ss_pred CeeeeeEEEECC---EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCE
Confidence 468999999963 358999999999999999999999999999999999999999999999999988776554 5679
Q ss_pred eEEccCCCcccc-cHHHHHhcCCCCCC------------HHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHH
Q 001438 461 GLVNQEPALFAT-TIRENILYGKDDAT------------MEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQ 527 (1077)
Q Consensus 461 ~~v~Q~~~lf~~-ti~~ni~~~~~~~~------------~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkq 527 (1077)
+|+||++.+|++ |++||+.++..... .++.. .+ ..+.++.+ |++...+....+|||||||
T Consensus 78 ~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~---~~~~l~~~--~l~~~~~~~~~~LSgG~~q 150 (236)
T cd03219 78 GRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREAR--ER---AEELLERV--GLADLADRPAGELSYGQQR 150 (236)
T ss_pred EEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHH--HH---HHHHHHHc--CccchhhCChhhCCHHHHH
Confidence 999999999987 99999987642111 11111 11 12223333 4445566777899999999
Q ss_pred HHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHH
Q 001438 528 RIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEEL 605 (1077)
Q Consensus 528 ri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 605 (1077)
|++||||++.+|+++||||||++||+.+++.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 151 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 230 (236)
T cd03219 151 RLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEV 230 (236)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecCHHHh
Confidence 9999999999999999999999999999999999998875 68999999999999865 999999999999999999988
Q ss_pred hcC
Q 001438 606 ISN 608 (1077)
Q Consensus 606 ~~~ 608 (1077)
..+
T Consensus 231 ~~~ 233 (236)
T cd03219 231 RNN 233 (236)
T ss_pred ccC
Confidence 653
No 114
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=8.3e-42 Score=361.59 Aligned_cols=204 Identities=33% Similarity=0.541 Sum_probs=179.9
Q ss_pred cccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhh
Q 001438 379 SGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQ 458 (1077)
Q Consensus 379 ~~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~ 458 (1077)
.+.++++|++++|+.. ..++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.+.+...+|+
T Consensus 4 ~~~l~~~~l~~~~~~~-~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 82 (207)
T cd03369 4 HGEIEVENLSVRYAPD-LPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRS 82 (207)
T ss_pred CCeEEEEEEEEEeCCC-CcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHh
Confidence 4679999999999743 236899999999999999999999999999999999999999999999999998888888888
Q ss_pred heeEEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccC
Q 001438 459 QIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKN 538 (1077)
Q Consensus 459 ~i~~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~ 538 (1077)
.|+|++|+|.+|++|++||+.+... ...+++.++++ +++++.+|||||+||++||||++.+
T Consensus 83 ~i~~v~q~~~~~~~tv~~~l~~~~~-~~~~~~~~~l~------------------~~~~~~~LS~G~~qrv~laral~~~ 143 (207)
T cd03369 83 SLTIIPQDPTLFSGTIRSNLDPFDE-YSDEEIYGALR------------------VSEGGLNLSQGQRQLLCLARALLKR 143 (207)
T ss_pred hEEEEecCCcccCccHHHHhcccCC-CCHHHHHHHhh------------------ccCCCCcCCHHHHHHHHHHHHHhhC
Confidence 9999999999999999999976432 23333222211 3456789999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhhcCEEEEEECCEEEEecCh
Q 001438 539 PSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSH 602 (1077)
Q Consensus 539 p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~~d~i~~l~~G~i~~~g~~ 602 (1077)
|+++||||||++||+.+.+.+.+.|++..+++|+|++||+++.+..||++++|++|++++.|++
T Consensus 144 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~~d~v~~l~~g~i~~~g~~ 207 (207)
T cd03369 144 PRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDHP 207 (207)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEecCCC
Confidence 9999999999999999999999999988778999999999999888999999999999988763
No 115
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=100.00 E-value=1.7e-38 Score=366.42 Aligned_cols=470 Identities=17% Similarity=0.137 Sum_probs=333.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccCCChhH------HHHHHHhHHHHHHHHH
Q 001438 103 YSLDFVYLSVAILFSSWIEVSCWMYTGERQAAKMRMAYLRSMLNQDISLFDTEASTGE------VISAITSDIIVVQDAL 176 (1077)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~------i~~r~~~D~~~i~~~~ 176 (1077)
....+.+++.+...+...+.++-.....++-.-+-..+.++.+...-.++.. ..|. .=.|+..|+..+-+..
T Consensus 88 ~l~~f~~ia~~~v~~~v~~~~L~~~l~~~wR~wLt~~l~~~wl~~~~~y~l~--~~~~~~~~dNpDQRi~eDi~~~t~~t 165 (604)
T COG4178 88 QLQVFAIIAGLLVLLNVAQTWLNQMLRLRWREWLTKDLLDRWLDPRRYYRLA--QAGGIGLIDNPDQRIQEDIRNFTETT 165 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHH--hcccccCCCChHHhHHHHHHHHHhhH
Confidence 3444555555555555556665555555555555566677777666333332 3332 3369999999988877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 177 SEKVGNFMHYISRFLGGFIIGFAR---------------VWQISLVTLSIVPLIALAGGMYAYVTIGLIARVRKSYVKAG 241 (1077)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (1077)
.+....++.++.+++.-.+++... ...+..++++.+++-.++..++++.+.+..-..++..+...
T Consensus 166 ~~l~~g~l~s~islisF~~iLw~lsg~~~~~~~g~~~~I~g~mv~~~i~Ya~~~s~~~~~iGr~Li~LN~~~~~~EA~fR 245 (604)
T COG4178 166 LDLSFGLLQSVISLISFTGILWSLSGGLAFTIGGFSFGIPGYMVWAVIIYAISASLLTHLIGRPLIRLNFERQKLEADFR 245 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCcceEeecccccccchHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHH
Confidence 766666666665544333332211 11122223333344444445566666666666666666666
Q ss_pred HHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHH
Q 001438 242 EIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGRKAGLAKGLGLGSMHCVLFLSWSLLVWYVSVVVHKHISNGGES 321 (1077)
Q Consensus 242 ~~~~E~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~g~~ 321 (1077)
..+.-.-++...|-.|+.|+.+.++.++......+...+......-...+......++.++-+..++.....|.++.|.+
T Consensus 246 ~~Lvrv~enaE~IAly~GE~~Er~~l~~~f~~v~~n~~~l~~~~~~l~~~~~gy~~~s~v~P~li~ap~~f~g~i~~G~l 325 (604)
T COG4178 246 YSLVRVRENAEAIALYRGEKVERRRLDDRFDAVLGNWRRLVRAQIRLTWFQLGYGWLSVVLPILIAAPRYFSGQITFGGL 325 (604)
T ss_pred HHHHHHHhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHhccHhhhcCcChHHHH
Confidence 66667778899999999999988877776665555444333322222222222223333333344455566889999998
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhccCc---cccccccc-CCCC---CCCcccEEEEeEEEEcCCC
Q 001438 322 FTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEMIERDT---MSKASSKT-GRKL---DKLSGHIEFKDVSFCYPSR 394 (1077)
Q Consensus 322 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~---~~~~~~~~-~~~~---~~~~~~i~~~~v~~~y~~~ 394 (1077)
......+......++.+...++.++.-++...|+.++.+.-+ ..+..... +... ...+..|+++|++..-|+.
T Consensus 326 mqa~~aF~~v~sslswfi~~~~~ia~~rA~~~Rl~~f~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nl~l~~p~~ 405 (604)
T COG4178 326 MQAVGAFGQVHSSLSWFIDNYDAIADWRATLLRLAEFRQALEAAQMDTEKPARTGRRIDFDDNADHGITLENLSLRTPDG 405 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccCcccccCcccccccccccccceeEEeeeeEECCCC
Confidence 888777777778889999999999999999999998864321 11100000 0000 1114679999999998864
Q ss_pred CCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhheeEEccCCCcccccH
Q 001438 395 PDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTI 474 (1077)
Q Consensus 395 ~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti 474 (1077)
...+++.||++++||.+-|.||||||||||+++|+|+.|--+|+|..-.. ..+-|+||.|++-.||+
T Consensus 406 --~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~-----------~~~lflpQ~PY~p~GtL 472 (604)
T COG4178 406 --QTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPAD-----------SALLFLPQRPYLPQGTL 472 (604)
T ss_pred --CeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCCC-----------CceEEecCCCCCCCccH
Confidence 36899999999999999999999999999999999999999999977521 24899999999999999
Q ss_pred HHHHhcCCCC--CCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCcCCCCC
Q 001438 475 RENILYGKDD--ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALD 552 (1077)
Q Consensus 475 ~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~p~illlDEpts~lD 552 (1077)
||-|+|+... .+++++.+++..+++.++++++.+-.+ -...||+|||||+++||.++++|++++|||+|||||
T Consensus 473 re~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~~~~-----W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALD 547 (604)
T COG4178 473 REALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDEEDR-----WDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALD 547 (604)
T ss_pred HHHHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhccCc-----HhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccC
Confidence 9999998743 789999999999999888887654322 345799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEEccCchhHhhcCEEEEEE
Q 001438 553 AESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQ 592 (1077)
Q Consensus 553 ~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~~d~i~~l~ 592 (1077)
++++..+.+.+++...+.|+|-|.||.......++.+-+.
T Consensus 548 e~~e~~l~q~l~~~lp~~tvISV~Hr~tl~~~h~~~l~l~ 587 (604)
T COG4178 548 EETEDRLYQLLKEELPDATVISVGHRPTLWNFHSRQLELL 587 (604)
T ss_pred hHHHHHHHHHHHhhCCCCEEEEeccchhhHHHHhhheeec
Confidence 9999999999999889999999999998887766655443
No 116
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=100.00 E-value=7.9e-42 Score=386.41 Aligned_cols=222 Identities=31% Similarity=0.523 Sum_probs=185.3
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhe
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 460 (1077)
.|+++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|++||+++.+.+. .++++
T Consensus 2 ~L~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~i 76 (353)
T PRK10851 2 SIEIANIKKSFGR---TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHA--RDRKV 76 (353)
T ss_pred EEEEEEEEEEeCC---eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH--HHCCE
Confidence 3789999999964 358999999999999999999999999999999999999999999999999976553 35689
Q ss_pred eEEccCCCcccc-cHHHHHhcCCCC------CCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHH
Q 001438 461 GLVNQEPALFAT-TIRENILYGKDD------ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISR 533 (1077)
Q Consensus 461 ~~v~Q~~~lf~~-ti~~ni~~~~~~------~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lAR 533 (1077)
+||+|++.+|+. |++||+.++... .+.++..+ +..++.+.+ |+.........+||||||||++|||
T Consensus 77 ~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~-----~L~~~~~~~~~~LSgGq~QRvalAr 149 (353)
T PRK10851 77 GFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKA--KVTQLLEMV-----QLAHLADRYPAQLSGGQKQRVALAR 149 (353)
T ss_pred EEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHH--HHHHHHHHc-----CCchhhhCChhhCCHHHHHHHHHHH
Confidence 999999999975 999999987531 12222111 112222222 2333345667799999999999999
Q ss_pred HhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHhcCCC
Q 001438 534 AIVKNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISNPN 610 (1077)
Q Consensus 534 al~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~ 610 (1077)
||+.+|++|||||||++||+.+++.+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++..++.
T Consensus 150 AL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~~~p~ 229 (353)
T PRK10851 150 ALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWREPA 229 (353)
T ss_pred HHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCcc
Confidence 99999999999999999999999999999988753 7899999999998765 99999999999999999999988765
Q ss_pred chHH
Q 001438 611 SAYA 614 (1077)
Q Consensus 611 ~~~~ 614 (1077)
..|.
T Consensus 230 ~~~~ 233 (353)
T PRK10851 230 TRFV 233 (353)
T ss_pred chHH
Confidence 5443
No 117
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=100.00 E-value=8.6e-42 Score=371.66 Aligned_cols=225 Identities=32% Similarity=0.554 Sum_probs=184.5
Q ss_pred EEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCC-----ccEEEECCeeCCCC--CHH
Q 001438 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPL-----SGEILLDGNNIKGL--DLK 454 (1077)
Q Consensus 382 i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~-----~G~i~~~g~~~~~~--~~~ 454 (1077)
++++|++++|++ ..+++|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++... +..
T Consensus 2 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~ 78 (247)
T TIGR00972 2 IEIENLNLFYGE---KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVV 78 (247)
T ss_pred EEEEEEEEEECC---eeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchH
Confidence 789999999974 35899999999999999999999999999999999999998 99999999998753 355
Q ss_pred HHhhheeEEccCCCcccccHHHHHhcCCCC---CCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHH
Q 001438 455 WLRQQIGLVNQEPALFATTIRENILYGKDD---ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAI 531 (1077)
Q Consensus 455 ~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~~---~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~l 531 (1077)
..|++++|+||++.+|+.|++||+.++... ...++..+.+ ..+.+.+ .+.+...........+||||||||++|
T Consensus 79 ~~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~--~~~l~~~-~l~~~~~~~~~~~~~~LSgG~~qrv~l 155 (247)
T TIGR00972 79 ELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIV--EESLKKA-ALWDEVKDRLHDSALGLSGGQQQRLCI 155 (247)
T ss_pred HHHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHH--HHHHHHc-CCCcchhhHhhCCcccCCHHHHHHHHH
Confidence 677889999999999999999999875321 1122211111 1111211 122111134566778999999999999
Q ss_pred HHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHhcCCC
Q 001438 532 SRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISNPN 610 (1077)
Q Consensus 532 ARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~ 610 (1077)
|||++.+|+++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++..++.
T Consensus 156 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~ 235 (247)
T TIGR00972 156 ARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIFTNPK 235 (247)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCCC
Confidence 99999999999999999999999999999999988767899999999998865 99999999999999999999876544
Q ss_pred ch
Q 001438 611 SA 612 (1077)
Q Consensus 611 ~~ 612 (1077)
..
T Consensus 236 ~~ 237 (247)
T TIGR00972 236 EK 237 (247)
T ss_pred Ch
Confidence 33
No 118
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.9e-42 Score=370.03 Aligned_cols=216 Identities=35% Similarity=0.546 Sum_probs=179.8
Q ss_pred EEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhee
Q 001438 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (1077)
Q Consensus 382 i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 461 (1077)
++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+. .+++++
T Consensus 3 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~ 77 (239)
T cd03296 3 IEVRNVSKRFGD---FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPV--QERNVG 77 (239)
T ss_pred EEEEeEEEEECC---EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc--cccceE
Confidence 789999999974 359999999999999999999999999999999999999999999999999876543 256799
Q ss_pred EEccCCCccc-ccHHHHHhcCCCCC------CHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHH
Q 001438 462 LVNQEPALFA-TTIRENILYGKDDA------TMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRA 534 (1077)
Q Consensus 462 ~v~Q~~~lf~-~ti~~ni~~~~~~~------~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARa 534 (1077)
|++|+|.+|+ .|++||+.++.... ..++..+ +...+ ++.+ |++........+||||||||++||||
T Consensus 78 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~--~~~~~---l~~~--~l~~~~~~~~~~LS~G~~qrl~la~a 150 (239)
T cd03296 78 FVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRA--KVHEL---LKLV--QLDWLADRYPAQLSGGQRQRVALARA 150 (239)
T ss_pred EEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHH--HHHHH---HHHc--CChhhhhcChhhCCHHHHHHHHHHHH
Confidence 9999999986 49999998764211 1111111 11112 2222 33444556677999999999999999
Q ss_pred hccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHhcCC
Q 001438 535 IVKNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISNP 609 (1077)
Q Consensus 535 l~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 609 (1077)
++.+|+++||||||++||+++++.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.+
T Consensus 151 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~ 228 (239)
T cd03296 151 LAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYDHP 228 (239)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHHhcCC
Confidence 9999999999999999999999999999988743 7899999999998765 9999999999999999999987653
No 119
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=2.3e-39 Score=404.72 Aligned_cols=387 Identities=19% Similarity=0.226 Sum_probs=326.1
Q ss_pred HHHHHhhcccchHHHHHHHHHHHHHhhHHhHHHHHHHHHHHhhccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 684 AIKLYSMVRPDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYYMDWDTTQREVKKITILFCCAAVITVIVHAIEHLSFG 763 (1077)
Q Consensus 684 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 763 (1077)
..+++.+.+++++++....+++++..+...+.++.+..+++....... ......+...++++.++..++.+++.++..
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iiD~v~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (708)
T TIGR01193 144 LLKFIPLITRQKKLIVNIVIAAIIVTLISIAGSYYLQKIIDTYIPHKM--MGTLGIISIGLIIAYIIQQILSYIQIFLLN 221 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566667777777666666666666677778888888876654211 112222334445555667788889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCccccccccCCchhHHHHHhhcHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 001438 764 IMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQNFGLVTASFVIAFILNWRIT 843 (1077)
Q Consensus 764 ~~~~~~~~~Lr~~l~~~llr~p~~FFD~~~~~~G~IlnR~s~D~~~i~~~l~~~l~~~~~~~~~~~~~i~i~~~~~w~l~ 843 (1077)
..+.+...++|.++|+++++.|++||+. +++|++++|++ |.+.+.+.+......++..+..+++.++++++++|+++
T Consensus 222 ~~~~~~~~~l~~~~~~~ll~l~~~~f~~--~~~G~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~ 298 (708)
T TIGR01193 222 VLGQRLSIDIILSYIKHLFELPMSFFST--RRTGEIVSRFT-DASSIIDALASTILSLFLDMWILVIVGLFLVRQNMLLF 298 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHhCC--CchhHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 9999999999999999999999999995 99999999998 99999998888887777887888888888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHcchHHHHHhcchHHHHHHHHHHhhhhhHHHHHHHHHH
Q 001438 844 LVVVATYPLIISGHISEKLFFQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRSFIRGQIA 923 (1077)
Q Consensus 844 l~~l~~~Pl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Etl~Gi~tIrAf~~e~~~~~~f~~~~~~~~~~~~~~~~~~ 923 (1077)
+++++++|+.++...+..+..++..++..+...+..+.+.|+++|++|||+|+.|+++.+++.+...+..+...+.....
T Consensus 299 li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (708)
T TIGR01193 299 LLSLLSIPVYAVIIILFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKAD 378 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988888888888888888888888889999999999999999999999999999999988888888877777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHcCCCCc
Q 001438 924 GIFYGISQFFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLALVPDLLKGNQMAASVFEVLDRKTQV 1003 (1077)
Q Consensus 924 ~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~ 1003 (1077)
+....+...+......+++|+|+.++..|.+++|.++++.++......|+..+......++.+..+.+|+.++++.+++.
T Consensus 379 ~~~~~~~~~~~~~~~i~il~~g~~lv~~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~ 458 (708)
T TIGR01193 379 QGQQAIKAVTKLILNVVILWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLVDSEF 458 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcc
Confidence 77777777777777888999999999999999999999999999899999999999999999999999999999877654
Q ss_pred cCCCC-cccccccccEEEeeeeeeCCCCCcccccccceeeeeCCCEEEEECCCCCCHHHHHHHHhhccCCCCCCC
Q 001438 1004 IGDIG-EELTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKA 1077 (1077)
Q Consensus 1004 ~~~~~-~~~~~~~G~I~f~nVsf~Y~~~~~~~VLk~vsl~I~~GekVaIVGrTGsGKSTLi~lL~Rfyd~~~G~i 1077 (1077)
+.... ...++..|+|+|+||+|+|+++ .+||+|+||+|+|||+||||||||||||||+++|.|+|+|++|+|
T Consensus 459 ~~~~~~~~~~~~~~~I~~~~vsf~y~~~--~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I 531 (708)
T TIGR01193 459 INKKKRTELNNLNGDIVINDVSYSYGYG--SNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEI 531 (708)
T ss_pred cccccccCCCCCCCcEEEEEEEEEcCCC--CcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEE
Confidence 32211 1223457899999999999743 358999999999999999999999999999999999999999986
No 120
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-41 Score=368.65 Aligned_cols=224 Identities=33% Similarity=0.548 Sum_probs=186.9
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhe
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 460 (1077)
.++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|+.+
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 79 (241)
T PRK14250 3 EIEFKEVSYSSFG---KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKI 79 (241)
T ss_pred eEEEEeEEEEeCC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcE
Confidence 4889999999964 3589999999999999999999999999999999999999999999999999877777788899
Q ss_pred eEEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccCCC
Q 001438 461 GLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPS 540 (1077)
Q Consensus 461 ~~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~p~ 540 (1077)
+|++|++.+|+.|++||+.++......+ ..++ ....+.+ .+++ ........+||||||||++||||++.+|+
T Consensus 80 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~-~~~~---~~~l~~~-~l~~---~~~~~~~~~LS~G~~qrl~la~al~~~p~ 151 (241)
T PRK14250 80 GMVFQQPHLFEGTVKDNIEYGPMLKGEK-NVDV---EYYLSIV-GLNK---EYATRDVKNLSGGEAQRVSIARTLANNPE 151 (241)
T ss_pred EEEecCchhchhhHHHHHhcchhhcCcH-HHHH---HHHHHHc-CCCH---HHhhCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999998764211111 1111 1111111 2221 23345677999999999999999999999
Q ss_pred EEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHhcCCCchHHH
Q 001438 541 ILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISNPNSAYAA 615 (1077)
Q Consensus 541 illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~ 615 (1077)
++||||||++||+.+.+.+.+.|+++. .|+|+|++||+++.+.. ||+|++|++|++++.|+++++...+...|..
T Consensus 152 llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~ 229 (241)
T PRK14250 152 VLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTNPQNEVTK 229 (241)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhcCCCcHHHH
Confidence 999999999999999999999998874 38999999999999865 9999999999999999999998654444444
No 121
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-41 Score=372.52 Aligned_cols=229 Identities=31% Similarity=0.549 Sum_probs=188.6
Q ss_pred cccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccC-----CCccEEEECCeeCCC--C
Q 001438 379 SGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYE-----PLSGEILLDGNNIKG--L 451 (1077)
Q Consensus 379 ~~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~-----~~~G~i~~~g~~~~~--~ 451 (1077)
.+.++++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.. .
T Consensus 11 ~~~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~ 87 (260)
T PRK10744 11 PSKIQVRNLNFYYGK---FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQ 87 (260)
T ss_pred CceEEEEEEEEEeCC---eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEcccccc
Confidence 356999999999964 358999999999999999999999999999999999986 589999999999853 3
Q ss_pred CHHHHhhheeEEccCCCcccccHHHHHhcCCC---CCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHH
Q 001438 452 DLKWLRQQIGLVNQEPALFATTIRENILYGKD---DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQR 528 (1077)
Q Consensus 452 ~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~---~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqr 528 (1077)
+...+|++++|++|++.+|+.|++||+.++.. ..+.++..+ +..++.+.+ .+.+++.+..++...+||||||||
T Consensus 88 ~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~--~~~~~l~~~-~l~~~~~~~~~~~~~~LS~Gq~qr 164 (260)
T PRK10744 88 DIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDE--RVEWALTKA-ALWNEVKDKLHQSGYSLSGGQQQR 164 (260)
T ss_pred chHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHH--HHHHHHHHc-CCChhhHHHHhcCCCCCCHHHHHH
Confidence 45677889999999999999999999987632 122222111 111222222 222233445677788999999999
Q ss_pred HHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHhc
Q 001438 529 IAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELIS 607 (1077)
Q Consensus 529 i~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 607 (1077)
++||||++.+|+++||||||++||+.+++.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+++++..
T Consensus 165 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 244 (260)
T PRK10744 165 LCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTDTIFT 244 (260)
T ss_pred HHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999999999999999988778899999999999865 99999999999999999999876
Q ss_pred CCCchH
Q 001438 608 NPNSAY 613 (1077)
Q Consensus 608 ~~~~~~ 613 (1077)
.+...|
T Consensus 245 ~~~~~~ 250 (260)
T PRK10744 245 KPAKKQ 250 (260)
T ss_pred CCCcHH
Confidence 544433
No 122
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.8e-42 Score=378.76 Aligned_cols=220 Identities=31% Similarity=0.538 Sum_probs=184.3
Q ss_pred EEEEeEEEEcCCCC--CcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCC----CHHH
Q 001438 382 IEFKDVSFCYPSRP--DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGL----DLKW 455 (1077)
Q Consensus 382 i~~~~v~~~y~~~~--~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~----~~~~ 455 (1077)
++++|++++|++.. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++... +...
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (286)
T PRK13646 3 IRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRP 82 (286)
T ss_pred EEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 78999999996432 13699999999999999999999999999999999999999999999999998653 3456
Q ss_pred HhhheeEEccCC--CcccccHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHhcCccchhh-hhcCCCCCCChHHHHHHH
Q 001438 456 LRQQIGLVNQEP--ALFATTIRENILYGKDD--ATMEEITRAAKLSEAMSFISNLPERFET-QVGERGIQLSGGQKQRIA 530 (1077)
Q Consensus 456 ~r~~i~~v~Q~~--~lf~~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t-~~~~~g~~LSgGqkqri~ 530 (1077)
+|++||||||+| .+|+.|++|||.++... .+.++..+. ..+.++.+ |+++ .....+.+||||||||++
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~-----~~~~l~~~--gL~~~~~~~~~~~LSgGq~qrv~ 155 (286)
T PRK13646 83 VRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNY-----AHRLLMDL--GFSRDVMSQSPFQMSGGQMRKIA 155 (286)
T ss_pred HHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHH-----HHHHHHHc--CCChhhhhCCcccCCHHHHHHHH
Confidence 788999999998 58888999999986421 222222221 11223222 4543 345678899999999999
Q ss_pred HHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEccCchhHh-hcCEEEEEECCEEEEecChhHHhc
Q 001438 531 ISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIR-NADVIAVVQGRKIVKTGSHEELIS 607 (1077)
Q Consensus 531 lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~ 607 (1077)
|||||+.+|+++||||||++||+.+.+.+.+.|+++. .|+|+|+|||+++.+. .||+|++|++|++++.|+++++.+
T Consensus 156 laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 235 (286)
T PRK13646 156 IVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFK 235 (286)
T ss_pred HHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999999999999874 4899999999999875 599999999999999999999876
Q ss_pred C
Q 001438 608 N 608 (1077)
Q Consensus 608 ~ 608 (1077)
+
T Consensus 236 ~ 236 (286)
T PRK13646 236 D 236 (286)
T ss_pred C
Confidence 4
No 123
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=100.00 E-value=7.7e-42 Score=366.46 Aligned_cols=217 Identities=30% Similarity=0.482 Sum_probs=180.6
Q ss_pred EEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHH-hhhe
Q 001438 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWL-RQQI 460 (1077)
Q Consensus 382 i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~-r~~i 460 (1077)
|+++|++++|++ .++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+.... |+++
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (222)
T cd03224 1 LEVENLNAGYGK---SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGI 77 (222)
T ss_pred CEEeeEEeecCC---eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCe
Confidence 478999999964 358999999999999999999999999999999999999999999999999987776554 5679
Q ss_pred eEEccCCCcccc-cHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccCC
Q 001438 461 GLVNQEPALFAT-TIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNP 539 (1077)
Q Consensus 461 ~~v~Q~~~lf~~-ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~p 539 (1077)
+|+||++.+|+. |++||+.++.......+.. .+.....+.+..+ +........+||||||||++||||++.+|
T Consensus 78 ~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~--~~~~~~l~~~~~l----~~~~~~~~~~LS~G~~qrv~laral~~~p 151 (222)
T cd03224 78 GYVPEGRRIFPELTVEENLLLGAYARRRAKRK--ARLERVYELFPRL----KERRKQLAGTLSGGEQQMLAIARALMSRP 151 (222)
T ss_pred EEeccccccCCCCcHHHHHHHHhhhcCchhHH--HHHHHHHHHHHhh----hhhhhCchhhCCHHHHHHHHHHHHHhcCC
Confidence 999999999987 9999998764322111111 1111222222222 33345567789999999999999999999
Q ss_pred CEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHhc
Q 001438 540 SILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELIS 607 (1077)
Q Consensus 540 ~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 607 (1077)
+++||||||++||+.+++.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 152 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 221 (222)
T cd03224 152 KLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELLA 221 (222)
T ss_pred CEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHhc
Confidence 9999999999999999999999998875 57999999999998765 99999999999999999888753
No 124
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.6e-42 Score=378.87 Aligned_cols=221 Identities=30% Similarity=0.540 Sum_probs=182.2
Q ss_pred EEEEeEEEEcCCCC--CcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCC----CCHHH
Q 001438 382 IEFKDVSFCYPSRP--DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKG----LDLKW 455 (1077)
Q Consensus 382 i~~~~v~~~y~~~~--~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~----~~~~~ 455 (1077)
++++|++++|++.. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. .....
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 78999999997421 1359999999999999999999999999999999999999999999999999864 34556
Q ss_pred HhhheeEEccCC--CcccccHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHH
Q 001438 456 LRQQIGLVNQEP--ALFATTIRENILYGKDD--ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAI 531 (1077)
Q Consensus 456 ~r~~i~~v~Q~~--~lf~~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~l 531 (1077)
.|++||||+|+| .+|+.|++|||.++... .+.++..+. .....+.+ .++. .....++.+||||||||++|
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~--~~~~l~~~-gL~~---~~~~~~~~~LSgGq~qrv~l 156 (290)
T PRK13634 83 LRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQK--AREMIELV-GLPE---ELLARSPFELSGGQMRRVAI 156 (290)
T ss_pred HHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHH--HHHHHHHC-CCCh---hhhhCCcccCCHHHHHHHHH
Confidence 778899999998 67888999999887421 223322211 11222222 2221 22355677999999999999
Q ss_pred HHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEccCchhHh-hcCEEEEEECCEEEEecChhHHhcC
Q 001438 532 SRAIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIR-NADVIAVVQGRKIVKTGSHEELISN 608 (1077)
Q Consensus 532 ARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 608 (1077)
||||+.+|++|||||||++||+.+.+.+.+.|+++. .|.|+|++||+++.+. .||||++|++|++++.|+++++.+.
T Consensus 157 AraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 236 (290)
T PRK13634 157 AGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREIFAD 236 (290)
T ss_pred HHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHhcC
Confidence 999999999999999999999999999999998874 3899999999999986 4999999999999999999998754
No 125
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-41 Score=375.34 Aligned_cols=216 Identities=30% Similarity=0.552 Sum_probs=181.1
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhe
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 460 (1077)
.++++|++++|++. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.+.+..++++++
T Consensus 4 ~l~~~~l~~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i 81 (274)
T PRK13647 4 IIEVEDLHFRYKDG--TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKV 81 (274)
T ss_pred eEEEEEEEEEeCCC--CeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhE
Confidence 48999999999632 3589999999999999999999999999999999999999999999999999888888888899
Q ss_pred eEEccCC--CcccccHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhc
Q 001438 461 GLVNQEP--ALFATTIRENILYGKD--DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIV 536 (1077)
Q Consensus 461 ~~v~Q~~--~lf~~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~ 536 (1077)
+|++|+| .++..|++||+.++.. ..+.++..+. ...+.+.+ |+.........+||||||||++|||||+
T Consensus 82 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~--~~~~l~~~-----~L~~~~~~~~~~LSgG~~qrv~laraL~ 154 (274)
T PRK13647 82 GLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERR--VEEALKAV-----RMWDFRDKPPYHLSYGQKKRVAIAGVLA 154 (274)
T ss_pred EEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHH--HHHHHHHC-----CCHHHhcCChhhCCHHHHHHHHHHHHHH
Confidence 9999998 5778899999998642 1222221111 11122211 2223344556789999999999999999
Q ss_pred cCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHh-hcCEEEEEECCEEEEecChhHH
Q 001438 537 KNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIR-NADVIAVVQGRKIVKTGSHEEL 605 (1077)
Q Consensus 537 ~~p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l 605 (1077)
.+|++|||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+. .||+|++|++|++++.|+++++
T Consensus 155 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 225 (274)
T PRK13647 155 MDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLL 225 (274)
T ss_pred cCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHh
Confidence 9999999999999999999999999998874 4899999999999985 5999999999999999998654
No 126
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1e-41 Score=369.91 Aligned_cols=220 Identities=35% Similarity=0.589 Sum_probs=182.3
Q ss_pred EEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhee
Q 001438 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (1077)
Q Consensus 382 i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 461 (1077)
++++|++++|++. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...+++.++
T Consensus 1 l~~~~l~~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 78 (242)
T cd03295 1 IEFENVTKRYGGG--KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIG 78 (242)
T ss_pred CEEEEEEEEeCCc--ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceE
Confidence 4689999999742 35899999999999999999999999999999999999999999999999998877777888999
Q ss_pred EEccCCCccc-ccHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccC
Q 001438 462 LVNQEPALFA-TTIRENILYGKD--DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKN 538 (1077)
Q Consensus 462 ~v~Q~~~lf~-~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~ 538 (1077)
|+||+|.+|+ .|++||+.++.. ....++.. .+...+.+.+ .++. +....+.+.+||||||||++||||++.+
T Consensus 79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~--~~~~~~l~~l-~l~~--~~~~~~~~~~LS~G~~qrv~laral~~~ 153 (242)
T cd03295 79 YVIQQIGLFPHMTVEENIALVPKLLKWPKEKIR--ERADELLALV-GLDP--AEFADRYPHELSGGQQQRVGVARALAAD 153 (242)
T ss_pred EEccCccccCCCcHHHHHHHHHHHcCCCHHHHH--HHHHHHHHHc-CCCc--HHHHhcChhhCCHHHHHHHHHHHHHhcC
Confidence 9999999996 599999987531 11111111 1111222222 2221 0134567789999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHhcC
Q 001438 539 PSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISN 608 (1077)
Q Consensus 539 p~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 608 (1077)
|+++||||||++||+.+.+.+.+.|+++. .++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 154 p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 226 (242)
T cd03295 154 PPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRS 226 (242)
T ss_pred CCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHcC
Confidence 99999999999999999999999999875 38999999999998754 999999999999999999998754
No 127
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-41 Score=371.66 Aligned_cols=224 Identities=31% Similarity=0.554 Sum_probs=183.8
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccC-----CCccEEEECCeeCCC--CCH
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYE-----PLSGEILLDGNNIKG--LDL 453 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~-----~~~G~i~~~g~~~~~--~~~ 453 (1077)
.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.. .+.
T Consensus 6 ~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (253)
T PRK14242 6 KMEARGLSFFYGD---FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDV 82 (253)
T ss_pred EEEEeeeEEEECC---eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCH
Confidence 5899999999963 358999999999999999999999999999999999975 589999999999865 344
Q ss_pred HHHhhheeEEccCCCcccccHHHHHhcCCCC--C-CHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHH
Q 001438 454 KWLRQQIGLVNQEPALFATTIRENILYGKDD--A-TMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIA 530 (1077)
Q Consensus 454 ~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~~--~-~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~ 530 (1077)
..+|++++|++|++.+|+.|++||+.++... . ..++..+. .....+.+ .+.+...+..+..+.+||||||||++
T Consensus 83 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~--~~~~l~~~-~l~~~~~~~~~~~~~~LSgGq~qrv~ 159 (253)
T PRK14242 83 VELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAER--VERSLRHA-ALWDEVKDRLHESALGLSGGQQQRLC 159 (253)
T ss_pred HHHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHH--HHHHHHHc-CCchhhhHHhhCCcccCCHHHHHHHH
Confidence 5678899999999999989999999875311 1 11111111 11111111 12222234456778899999999999
Q ss_pred HHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHhcCC
Q 001438 531 ISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISNP 609 (1077)
Q Consensus 531 lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 609 (1077)
||||++.+|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.+
T Consensus 160 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~ 239 (253)
T PRK14242 160 IARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQIFTRP 239 (253)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHHHHHcCC
Confidence 999999999999999999999999999999999988778999999999999865 9999999999999999999987654
Q ss_pred C
Q 001438 610 N 610 (1077)
Q Consensus 610 ~ 610 (1077)
.
T Consensus 240 ~ 240 (253)
T PRK14242 240 R 240 (253)
T ss_pred C
Confidence 3
No 128
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=100.00 E-value=1.2e-41 Score=381.93 Aligned_cols=230 Identities=27% Similarity=0.407 Sum_probs=189.7
Q ss_pred cEEEEeEEEEcCCCC----------CcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCC
Q 001438 381 HIEFKDVSFCYPSRP----------DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKG 450 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~----------~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~ 450 (1077)
-++++|++++|+.+. ...+++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|+++.+
T Consensus 8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~ 87 (331)
T PRK15079 8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLG 87 (331)
T ss_pred eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCc
Confidence 589999999996321 2468999999999999999999999999999999999999999999999999988
Q ss_pred CCHHH---HhhheeEEccCC--Cccc-ccHHHHHhcCCC----CCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCC
Q 001438 451 LDLKW---LRQQIGLVNQEP--ALFA-TTIRENILYGKD----DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQ 520 (1077)
Q Consensus 451 ~~~~~---~r~~i~~v~Q~~--~lf~-~ti~~ni~~~~~----~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~ 520 (1077)
++..+ +|++|+||+|+| .+++ .|+.|||.++.. ..+.++..+.. .++.+.+ .++ +......+.+
T Consensus 88 ~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~--~~~l~~v-gl~---~~~~~~~p~~ 161 (331)
T PRK15079 88 MKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRV--KAMMLKV-GLL---PNLINRYPHE 161 (331)
T ss_pred CCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHH--HHHHHHc-CCC---hHHhcCCccc
Confidence 87543 567899999998 4674 599999976421 12333322221 1222222 121 1234667789
Q ss_pred CChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEccCchhHhh-cCEEEEEECCEEE
Q 001438 521 LSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRN-ADVIAVVQGRKIV 597 (1077)
Q Consensus 521 LSgGqkqri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~ 597 (1077)
||||||||++|||||+.+|++||+||||++||..++..+.+.|+++.+ +.|+|+|||+++.+.. ||+|++|++|+|+
T Consensus 162 LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~G~iv 241 (331)
T PRK15079 162 FSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHAV 241 (331)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999998753 8999999999999976 9999999999999
Q ss_pred EecChhHHhcCCCchHHHH
Q 001438 598 KTGSHEELISNPNSAYAAL 616 (1077)
Q Consensus 598 ~~g~~~~l~~~~~~~~~~~ 616 (1077)
+.|+++++..++...|.+.
T Consensus 242 e~g~~~~i~~~~~~py~~~ 260 (331)
T PRK15079 242 ELGTYDEVYHNPLHPYTKA 260 (331)
T ss_pred EEcCHHHHHcCCCCHHHHH
Confidence 9999999998777777653
No 129
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-41 Score=388.92 Aligned_cols=221 Identities=31% Similarity=0.524 Sum_probs=184.1
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhe
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 460 (1077)
.++++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.+.+.. +++|
T Consensus 3 ~l~i~~l~~~~~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~--~~~i 77 (369)
T PRK11000 3 SVTLRNVTKAYGD---VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPA--ERGV 77 (369)
T ss_pred EEEEEEEEEEeCC---eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHh--HCCE
Confidence 4899999999963 3589999999999999999999999999999999999999999999999999766543 4679
Q ss_pred eEEccCCCcccc-cHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhcc
Q 001438 461 GLVNQEPALFAT-TIRENILYGKDD--ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVK 537 (1077)
Q Consensus 461 ~~v~Q~~~lf~~-ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~ 537 (1077)
+||+|++.+|+. |++||+.++... ...++..+ +.... ++.+ |++........+||||||||++|||||+.
T Consensus 78 ~~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~--~~~~~---l~~l--gL~~~~~~~~~~LSgGq~QRvaLAraL~~ 150 (369)
T PRK11000 78 GMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQ--RVNQV---AEVL--QLAHLLDRKPKALSGGQRQRVAIGRTLVA 150 (369)
T ss_pred EEEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHH--HHHHH---HHHc--CChhhhcCChhhCCHHHHHHHHHHHHHhc
Confidence 999999999975 999999987421 12222111 11111 2222 33444556677999999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHhcCCCchH
Q 001438 538 NPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISNPNSAY 613 (1077)
Q Consensus 538 ~p~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~~~ 613 (1077)
+|++|||||||++||+.+++.+.+.|+++. .+.|+|+|||+++.+.. ||+|++|++|++++.|+++++...+...|
T Consensus 151 ~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~~p~~~~ 229 (369)
T PRK11000 151 EPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPANRF 229 (369)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCcccHH
Confidence 999999999999999999999999998874 38999999999998765 99999999999999999999987655443
No 130
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=4e-42 Score=356.69 Aligned_cols=225 Identities=36% Similarity=0.544 Sum_probs=189.7
Q ss_pred cEEEEeEEEEcCCCCC---------------------cccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCcc
Q 001438 381 HIEFKDVSFCYPSRPD---------------------VAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSG 439 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~---------------------~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G 439 (1077)
.|+++||++-|+.+++ ..-++|+||+|+.||+..|.|-||||||||++++.|+++|++|
T Consensus 4 ~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G 83 (386)
T COG4175 4 KIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRG 83 (386)
T ss_pred eEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCc
Confidence 5888899888865331 1137899999999999999999999999999999999999999
Q ss_pred EEEECCeeCCCCCHHHHh----hheeEEccCCCcccc-cHHHHHhcCCCCC------CHHHHHHHHHHHhHHHHHhcCcc
Q 001438 440 EILLDGNNIKGLDLKWLR----QQIGLVNQEPALFAT-TIRENILYGKDDA------TMEEITRAAKLSEAMSFISNLPE 508 (1077)
Q Consensus 440 ~i~~~g~~~~~~~~~~~r----~~i~~v~Q~~~lf~~-ti~~ni~~~~~~~------~~~~~~~~~~~~~~~~~i~~l~~ 508 (1077)
+|+++|.|+..++.+++| ++++.|+|+.-|++- ||.||..||.+-. +.+...++++++++.+
T Consensus 84 ~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~------- 156 (386)
T COG4175 84 EILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEG------- 156 (386)
T ss_pred eEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchh-------
Confidence 999999999999977654 479999999999976 9999999997421 1222333444444333
Q ss_pred chhhhhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEccCchhH-hhc
Q 001438 509 RFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTI-RNA 585 (1077)
Q Consensus 509 g~~t~~~~~g~~LSgGqkqri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~-~~~ 585 (1077)
.-...+.+||||+|||+.|||||..+|+|||+|||+|||||--+..+++.|.++. -+||+|+|||+++.. +..
T Consensus 157 ----~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG 232 (386)
T COG4175 157 ----YADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIG 232 (386)
T ss_pred ----hhhcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhcc
Confidence 3344566899999999999999999999999999999999999999999988764 379999999999975 569
Q ss_pred CEEEEEECCEEEEecChhHHhcCCCchHHHH
Q 001438 586 DVIAVVQGRKIVKTGSHEELISNPNSAYAAL 616 (1077)
Q Consensus 586 d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~ 616 (1077)
|||.+|++|+|++.|||+|++.+|...|-.-
T Consensus 233 ~rIaimkdG~ivQ~Gtp~eIl~~PAndYV~~ 263 (386)
T COG4175 233 DRIAIMKDGEIVQVGTPEEILLNPANDYVRD 263 (386)
T ss_pred ceEEEecCCeEEEeCCHHHHHcCccHHHHHH
Confidence 9999999999999999999999887777543
No 131
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=9.8e-42 Score=380.26 Aligned_cols=218 Identities=26% Similarity=0.466 Sum_probs=182.5
Q ss_pred ccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhh
Q 001438 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQ 459 (1077)
Q Consensus 380 ~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~ 459 (1077)
..++++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ...|++
T Consensus 6 ~~i~i~~l~k~~~~---~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~-~~~~~~ 81 (306)
T PRK13537 6 APIDFRNVEKRYGD---KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRA-RHARQR 81 (306)
T ss_pred ceEEEEeEEEEECC---eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccch-HHHHhc
Confidence 36999999999963 46999999999999999999999999999999999999999999999999987654 457889
Q ss_pred eeEEccCCCccc-ccHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhc
Q 001438 460 IGLVNQEPALFA-TTIRENILYGKD--DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIV 536 (1077)
Q Consensus 460 i~~v~Q~~~lf~-~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~ 536 (1077)
|||+||++.++. .|++||+.+... ..+..+..+ +..++.+.+ .+++..++. ..+||||||||++|||||+
T Consensus 82 ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~--~~~~~l~~~-~l~~~~~~~----~~~LS~G~~qrl~la~aL~ 154 (306)
T PRK13537 82 VGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARA--LVPPLLEFA-KLENKADAK----VGELSGGMKRRLTLARALV 154 (306)
T ss_pred EEEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHH--HHHHHHHHc-CCchHhcCc----hhhCCHHHHHHHHHHHHHh
Confidence 999999999986 599999985321 112222221 112233322 344444444 4589999999999999999
Q ss_pred cCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHhcC
Q 001438 537 KNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISN 608 (1077)
Q Consensus 537 ~~p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 608 (1077)
.+|++|+|||||++||+.+++.+.+.|+++. +|+|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 155 ~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 228 (306)
T PRK13537 155 NDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIES 228 (306)
T ss_pred CCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 9999999999999999999999999999875 48999999999999876 999999999999999999998654
No 132
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-41 Score=385.63 Aligned_cols=224 Identities=32% Similarity=0.552 Sum_probs=186.7
Q ss_pred cccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhh
Q 001438 379 SGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQ 458 (1077)
Q Consensus 379 ~~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~ 458 (1077)
...++++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.+.+. .++
T Consensus 17 ~~~l~l~~v~~~~~~---~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r 91 (377)
T PRK11607 17 TPLLEIRNLTKSFDG---QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPP--YQR 91 (377)
T ss_pred CceEEEEeEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--HHC
Confidence 346999999999963 358999999999999999999999999999999999999999999999999987654 467
Q ss_pred heeEEccCCCcccc-cHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHh
Q 001438 459 QIGLVNQEPALFAT-TIRENILYGKDD--ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAI 535 (1077)
Q Consensus 459 ~i~~v~Q~~~lf~~-ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal 535 (1077)
.||||+|++.+|+. |++|||.|+... ....+..+ +..++.+. + |+.........+||||||||++|||||
T Consensus 92 ~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~--~v~~~l~~---l--~L~~~~~~~~~~LSgGq~QRVaLARAL 164 (377)
T PRK11607 92 PINMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIAS--RVNEMLGL---V--HMQEFAKRKPHQLSGGQRQRVALARSL 164 (377)
T ss_pred CEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHH--HHHHHHHH---c--CCchhhcCChhhCCHHHHHHHHHHHHH
Confidence 89999999999986 999999987531 22222211 11222222 2 233344566779999999999999999
Q ss_pred ccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEccCchhHh-hcCEEEEEECCEEEEecChhHHhcCCCch
Q 001438 536 VKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIR-NADVIAVVQGRKIVKTGSHEELISNPNSA 612 (1077)
Q Consensus 536 ~~~p~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~~~~~ 612 (1077)
+.+|++||||||||+||..+++.+.+.|+++. .+.|+|+|||+++.+. .||+|++|++|++++.|+++|+..++...
T Consensus 165 ~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~~p~~~ 244 (377)
T PRK11607 165 AKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHPTTR 244 (377)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHhCCccH
Confidence 99999999999999999999999998887764 3799999999999875 59999999999999999999999876655
Q ss_pred HH
Q 001438 613 YA 614 (1077)
Q Consensus 613 ~~ 614 (1077)
|.
T Consensus 245 ~~ 246 (377)
T PRK11607 245 YS 246 (377)
T ss_pred HH
Confidence 43
No 133
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.2e-41 Score=367.38 Aligned_cols=220 Identities=35% Similarity=0.572 Sum_probs=182.2
Q ss_pred EEEEeEEEEcCCCC-CcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHH---HHh
Q 001438 382 IEFKDVSFCYPSRP-DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLK---WLR 457 (1077)
Q Consensus 382 i~~~~v~~~y~~~~-~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~---~~r 457 (1077)
|+++|++++|+++. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+.. ..+
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR 81 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 68999999997431 12699999999999999999999999999999999999999999999999999876543 347
Q ss_pred hheeEEccCCCccc-ccHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHH
Q 001438 458 QQIGLVNQEPALFA-TTIRENILYGKD--DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRA 534 (1077)
Q Consensus 458 ~~i~~v~Q~~~lf~-~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARa 534 (1077)
+.++|+||++.+|+ .|++||+.++.. .....+..+ ...+.++.+ |++........+||||||||++||||
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~a 154 (233)
T cd03258 82 RRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEE-----RVLELLELV--GLEDKADAYPAQLSGGQKQRVGIARA 154 (233)
T ss_pred hheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHC--CChhhhhcChhhCCHHHHHHHHHHHH
Confidence 78999999999997 599999987532 112111111 111223333 34444556678999999999999999
Q ss_pred hccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHhcC
Q 001438 535 IVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISN 608 (1077)
Q Consensus 535 l~~~p~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 608 (1077)
++.+|+++||||||++||+.+.+.+.+.|+++. .++|+|++||+++.+.. ||++++|++|++++.|+++++.++
T Consensus 155 l~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 231 (233)
T cd03258 155 LANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFAN 231 (233)
T ss_pred HhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhcC
Confidence 999999999999999999999999999998874 38999999999999865 999999999999999999888653
No 134
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=3e-42 Score=335.90 Aligned_cols=219 Identities=29% Similarity=0.484 Sum_probs=183.7
Q ss_pred EEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhee
Q 001438 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (1077)
Q Consensus 382 i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 461 (1077)
+++++++++|++ ...+++|+||+++.||++||.|||||||||++++|..++.|++|+|++||.|... ++...|++||
T Consensus 2 l~v~~l~K~y~~--~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~-~p~~vrr~IG 78 (245)
T COG4555 2 LEVTDLTKSYGS--KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVR-DPSFVRRKIG 78 (245)
T ss_pred eeeeehhhhccC--HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeeccccc-ChHHHhhhcc
Confidence 688999999975 2458999999999999999999999999999999999999999999999999865 4566788999
Q ss_pred EEccCCCcccc-cHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccCCC
Q 001438 462 LVNQEPALFAT-TIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPS 540 (1077)
Q Consensus 462 ~v~Q~~~lf~~-ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~p~ 540 (1077)
.++-+.-++.. |++|||.|.............++.+.+.+.+ +++.....+..++|-|+|||++|||||++||+
T Consensus 79 Vl~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l-----~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~ 153 (245)
T COG4555 79 VLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRL-----QLLEYLDRRVGEFSTGMKQKVAIARALVHDPS 153 (245)
T ss_pred eecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHh-----ChHHHHHHHHhhhchhhHHHHHHHHHHhcCCC
Confidence 99988888765 9999998754222222222233444443332 23333444455799999999999999999999
Q ss_pred EEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHhcC
Q 001438 541 ILLLDEATSALDAESENSVQEALDRVMV-GRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISN 608 (1077)
Q Consensus 541 illlDEpts~lD~~~~~~i~~~l~~~~~-~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 608 (1077)
+++||||||+||..+.+.+++.+++++. |+++|+.||.++.++. ||+|+++++|+++..|+.+++.+.
T Consensus 154 i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~~r 223 (245)
T COG4555 154 ILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDAR 223 (245)
T ss_pred eEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHHHH
Confidence 9999999999999999999999998864 9999999999999985 999999999999999999998653
No 135
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-41 Score=377.55 Aligned_cols=221 Identities=27% Similarity=0.488 Sum_probs=181.2
Q ss_pred EEEEeEEEEcCCCC--CcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCC---------
Q 001438 382 IEFKDVSFCYPSRP--DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKG--------- 450 (1077)
Q Consensus 382 i~~~~v~~~y~~~~--~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~--------- 450 (1077)
|+++|++++|++.. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++..
T Consensus 3 i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (305)
T PRK13651 3 IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEK 82 (305)
T ss_pred EEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccc
Confidence 78999999997432 1358999999999999999999999999999999999999999999999887632
Q ss_pred ---------------CCHHHHhhheeEEccCC--CcccccHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHhcCccchh
Q 001438 451 ---------------LDLKWLRQQIGLVNQEP--ALFATTIRENILYGKD--DATMEEITRAAKLSEAMSFISNLPERFE 511 (1077)
Q Consensus 451 ---------------~~~~~~r~~i~~v~Q~~--~lf~~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~ 511 (1077)
.+...+|++||||+|+| .+|..|++|||.|+.. ....++..+. ..+..+.+ .++.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~--~~~~l~~~-gL~~--- 156 (305)
T PRK13651 83 VLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKR--AAKYIELV-GLDE--- 156 (305)
T ss_pred cccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHH--HHHHHHHc-CCCh---
Confidence 13456788999999986 5788899999998742 1222222221 11222222 2221
Q ss_pred hhhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHh-hcCEEE
Q 001438 512 TQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIR-NADVIA 589 (1077)
Q Consensus 512 t~~~~~g~~LSgGqkqri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~-~~d~i~ 589 (1077)
........+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++. .|+|+|+|||+++.+. .||||+
T Consensus 157 ~~~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~adrv~ 236 (305)
T PRK13651 157 SYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTI 236 (305)
T ss_pred hhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHhCCEEE
Confidence 23456778999999999999999999999999999999999999999999998874 5899999999999875 599999
Q ss_pred EEECCEEEEecChhHHhcC
Q 001438 590 VVQGRKIVKTGSHEELISN 608 (1077)
Q Consensus 590 ~l~~G~i~~~g~~~~l~~~ 608 (1077)
+|++|++++.|+++++.++
T Consensus 237 vl~~G~i~~~g~~~~~~~~ 255 (305)
T PRK13651 237 FFKDGKIIKDGDTYDILSD 255 (305)
T ss_pred EEECCEEEEECCHHHHhcC
Confidence 9999999999999998764
No 136
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2.1e-41 Score=341.22 Aligned_cols=220 Identities=31% Similarity=0.494 Sum_probs=188.7
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHH-Hhhh
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKW-LRQQ 459 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~-~r~~ 459 (1077)
.++++|++..|.. ..+|++|||++++||+++++||||+|||||+++|+|+.+|.+|+|.++|+|++..++++ .|..
T Consensus 3 mL~v~~l~~~YG~---~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~G 79 (237)
T COG0410 3 MLEVENLSAGYGK---IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLG 79 (237)
T ss_pred ceeEEeEeecccc---eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCC
Confidence 4789999999974 46999999999999999999999999999999999999999999999999999998766 4667
Q ss_pred eeEEccCCCcccc-cHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccC
Q 001438 460 IGLVNQEPALFAT-TIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKN 538 (1077)
Q Consensus 460 i~~v~Q~~~lf~~-ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~ 538 (1077)
|+||||...+|+. ||.||+.+|......++..+. ..... .+-+| .+....+.++.+|||||+|.+||||||+.+
T Consensus 80 i~~VPegR~iF~~LTVeENL~~g~~~~~~~~~~~~-~~e~v---~~lFP-~Lker~~~~aG~LSGGEQQMLAiaRALm~~ 154 (237)
T COG0410 80 IAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQER-DLEEV---YELFP-RLKERRNQRAGTLSGGEQQMLAIARALMSR 154 (237)
T ss_pred eEeCcccccchhhCcHHHHHhhhhhcccccccccc-cHHHH---HHHCh-hHHHHhcCcccCCChHHHHHHHHHHHHhcC
Confidence 9999999999987 999999987522211111000 01111 23345 356677888999999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEccCchhHh-hcCEEEEEECCEEEEecChhHHhcC
Q 001438 539 PSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIR-NADVIAVVQGRKIVKTGSHEELISN 608 (1077)
Q Consensus 539 p~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 608 (1077)
|++|+|||||.+|-|.-.+.|.+.|+++.+ +.||++|-++..... .|||.+||++|+|+.+|+.+||.++
T Consensus 155 PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~~ 227 (237)
T COG0410 155 PKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLAD 227 (237)
T ss_pred CCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhcC
Confidence 999999999999999999999999999874 679999999999865 5999999999999999999999875
No 137
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=100.00 E-value=1.1e-41 Score=364.47 Aligned_cols=215 Identities=28% Similarity=0.477 Sum_probs=177.3
Q ss_pred EEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhee
Q 001438 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (1077)
Q Consensus 382 i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 461 (1077)
|+++|+++.|++. ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++... ...++++++
T Consensus 1 l~~~~l~~~~~~~-~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~-~~~~~~~i~ 78 (220)
T cd03263 1 LQIRNLTKTYKKG-TKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTD-RKAARQSLG 78 (220)
T ss_pred CEEEeeEEEeCCC-CceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccc-hHHHhhhEE
Confidence 5789999999742 14699999999999999999999999999999999999999999999999998754 356678899
Q ss_pred EEccCCCccc-ccHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccC
Q 001438 462 LVNQEPALFA-TTIRENILYGKD--DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKN 538 (1077)
Q Consensus 462 ~v~Q~~~lf~-~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~ 538 (1077)
|++|++.+++ .|++||+.++.. ....++..+ +..++ ++.+ |+.........+||||||||++||||++.+
T Consensus 79 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~--~~~~~---l~~~--~l~~~~~~~~~~LS~G~~qrv~la~al~~~ 151 (220)
T cd03263 79 YCPQFDALFDELTVREHLRFYARLKGLPKSEIKE--EVELL---LRVL--GLTDKANKRARTLSGGMKRKLSLAIALIGG 151 (220)
T ss_pred EecCcCCccccCCHHHHHHHHHHHcCCCHHHHHH--HHHHH---HHHc--CCHHHHhChhhhCCHHHHHHHHHHHHHhcC
Confidence 9999999985 699999987431 112221111 11111 2221 222233445568999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHH
Q 001438 539 PSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEEL 605 (1077)
Q Consensus 539 p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 605 (1077)
|+++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 152 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 152 PSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred CCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 9999999999999999999999999988777999999999999865 999999999999999998875
No 138
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=7.2e-39 Score=398.79 Aligned_cols=387 Identities=18% Similarity=0.207 Sum_probs=323.8
Q ss_pred HHHHHhh-cccchHHHHHHHHHHHHHhhHHhHHHHHHHHHHHhhccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 684 AIKLYSM-VRPDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYYMDWDTTQREVKKITILFCCAAVITVIVHAIEHLSF 762 (1077)
Q Consensus 684 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 762 (1077)
.++++++ .+++++.+...++++++......+.++.+..+++....... ......+.+.++++.++..++.+++.+..
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (686)
T TIGR03797 123 LRDLLRFALRGARRDLLAILAMGLLGTLLGMLVPIATGILIGTAIPDAD--RSLLVQIALALLAAAVGAAAFQLAQSLAV 200 (686)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC--hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444 45666666666666666666666677777777765543211 11222334455566667788889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCccccccccCCchhHHHHHhhcHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHH
Q 001438 763 GIMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQNFGLVTASFVIAFILNWRI 842 (1077)
Q Consensus 763 ~~~~~~~~~~Lr~~l~~~llr~p~~FFD~~~~~~G~IlnR~s~D~~~i~~~l~~~l~~~~~~~~~~~~~i~i~~~~~w~l 842 (1077)
...+.++..++|.++|+++++.|++||+. +++|++++|++ |++.+++.+...+...+..+..+++.++++++++|++
T Consensus 201 ~~~~~~~~~~l~~~~~~~ll~~~~~~~~~--~~~g~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l 277 (686)
T TIGR03797 201 LRLETRMDASLQAAVWDRLLRLPVSFFRQ--YSTGDLASRAM-GISQIRRILSGSTLTTLLSGIFALLNLGLMFYYSWKL 277 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHCC--CChhHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999995 99999999997 8999999998888777777777788888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHcchHHHHHhcchHHHHHHHHHHhhhhhHHHHHHHHH
Q 001438 843 TLVVVATYPLIISGHISEKLFFQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRSFIRGQI 922 (1077)
Q Consensus 843 ~l~~l~~~Pl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Etl~Gi~tIrAf~~e~~~~~~f~~~~~~~~~~~~~~~~~ 922 (1077)
++++++++|+.++...+..+..++..++..+...+..+.+.|+++|+.|||+++.|+++.++|.+..++..+...+....
T Consensus 278 ~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 357 (686)
T TIGR03797 278 ALVAVALALVAIAVTLVLGLLQVRKERRLLELSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLELSAQRI 357 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988887777777777777778888888889999999999999999999999999999999999888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHcCCCC
Q 001438 923 AGIFYGISQFFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLALVPDLLKGNQMAASVFEVLDRKTQ 1002 (1077)
Q Consensus 923 ~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~ 1002 (1077)
.++...+...+..+...+++|+|+.++..|.+++|.++++.++......|+..+......++.+..+.+|+.++++.+++
T Consensus 358 ~~~~~~~~~~i~~~~~~~il~~g~~lv~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e 437 (686)
T TIGR03797 358 ENLLTVFNAVLPVLTSAALFAAAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALPE 437 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 88888888888888888999999999999999999999999998888999999999999999999999999999987665
Q ss_pred ccCCCCcccccccccEEEeeeeeeCCCCCcccccccceeeeeCCCEEEEECCCCCCHHHHHHHHhhccCCCCCCC
Q 001438 1003 VIGDIGEELTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKA 1077 (1077)
Q Consensus 1003 ~~~~~~~~~~~~~G~I~f~nVsf~Y~~~~~~~VLk~vsl~I~~GekVaIVGrTGsGKSTLi~lL~Rfyd~~~G~i 1077 (1077)
.+... ....+.+|.|+|+||+|+||+. +.+||+|+||+|+|||+||||||||||||||+++|.|+|+|++|+|
T Consensus 438 ~~~~~-~~~~~~~~~I~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I 510 (686)
T TIGR03797 438 VDEAK-TDPGKLSGAIEVDRVTFRYRPD-GPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSV 510 (686)
T ss_pred cccCc-CCCCCCCceEEEEEEEEEcCCC-CccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEE
Confidence 43211 1122346899999999999754 3468999999999999999999999999999999999999999986
No 139
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.3e-41 Score=367.56 Aligned_cols=215 Identities=37% Similarity=0.579 Sum_probs=180.6
Q ss_pred EEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCC---HHHHhh
Q 001438 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLD---LKWLRQ 458 (1077)
Q Consensus 382 i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~---~~~~r~ 458 (1077)
++++|++++|+++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+ ...+++
T Consensus 1 l~~~~l~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (241)
T cd03256 1 IEVENLSKTYPNG--KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRR 78 (241)
T ss_pred CEEeeEEEecCCc--cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHh
Confidence 4789999999641 35899999999999999999999999999999999999999999999999998776 456788
Q ss_pred heeEEccCCCccc-ccHHHHHhcCCCCC-----------CHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHH
Q 001438 459 QIGLVNQEPALFA-TTIRENILYGKDDA-----------TMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQK 526 (1077)
Q Consensus 459 ~i~~v~Q~~~lf~-~ti~~ni~~~~~~~-----------~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqk 526 (1077)
.++|+||++.+|+ .|++||+.++.... ..+...+ ..+.++.+ |+.......+.+||||||
T Consensus 79 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~l~~~--~l~~~~~~~~~~LS~G~~ 150 (241)
T cd03256 79 QIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQR------ALAALERV--GLLDKAYQRADQLSGGQQ 150 (241)
T ss_pred ccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHH------HHHHHHHc--CChhhhCCCcccCCHHHH
Confidence 8999999999887 59999998753210 1111111 11222222 344445667889999999
Q ss_pred HHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEccCchhHh-hcCEEEEEECCEEEEecChh
Q 001438 527 QRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIR-NADVIAVVQGRKIVKTGSHE 603 (1077)
Q Consensus 527 qri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~ 603 (1077)
||++||||++.+|+++||||||++||+.+.+.+.+.|+++. .|+|+|++||+++.+. .||++++|++|++++.|+++
T Consensus 151 qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~ 230 (241)
T cd03256 151 QRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPA 230 (241)
T ss_pred HHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCHH
Confidence 99999999999999999999999999999999999998874 3899999999999987 59999999999999999998
Q ss_pred HHh
Q 001438 604 ELI 606 (1077)
Q Consensus 604 ~l~ 606 (1077)
++.
T Consensus 231 ~~~ 233 (241)
T cd03256 231 ELT 233 (241)
T ss_pred Hhh
Confidence 863
No 140
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.5e-41 Score=370.02 Aligned_cols=228 Identities=27% Similarity=0.490 Sum_probs=185.5
Q ss_pred ccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCC-----CccEEEECCeeCCCCC--
Q 001438 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEP-----LSGEILLDGNNIKGLD-- 452 (1077)
Q Consensus 380 ~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~-----~~G~i~~~g~~~~~~~-- 452 (1077)
..|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++...+
T Consensus 11 ~~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 87 (258)
T PRK14268 11 PQIKVENLNLWYGE---KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVD 87 (258)
T ss_pred eeEEEeeeEEEeCC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccch
Confidence 36999999999963 3589999999999999999999999999999999999985 7999999999986532
Q ss_pred HHHHhhheeEEccCCCcccccHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHH
Q 001438 453 LKWLRQQIGLVNQEPALFATTIRENILYGKD--DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIA 530 (1077)
Q Consensus 453 ~~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~ 530 (1077)
...+|+.++|++|++.+|+.|++||+.++.. ....++..+ +...+.+.+ .+.+...........+||||||||++
T Consensus 88 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~--~~~~~l~~~-~l~~~~~~~~~~~~~~LSgG~~qrv~ 164 (258)
T PRK14268 88 VVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDG--VVENALRSA-ALWDETSDRLKSPALSLSGGQQQRLC 164 (258)
T ss_pred HHHHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHH--HHHHHHHHc-CCCcchhhhhcCChhhCCHHHHHHHH
Confidence 3456788999999999999999999987531 112222111 111122222 12111223445667799999999999
Q ss_pred HHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHhcCC
Q 001438 531 ISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISNP 609 (1077)
Q Consensus 531 lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 609 (1077)
||||++.+|+++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++..++
T Consensus 165 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~ 244 (258)
T PRK14268 165 IARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQIFHNP 244 (258)
T ss_pred HHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcCC
Confidence 999999999999999999999999999999999988778999999999999865 9999999999999999999997654
Q ss_pred CchH
Q 001438 610 NSAY 613 (1077)
Q Consensus 610 ~~~~ 613 (1077)
...|
T Consensus 245 ~~~~ 248 (258)
T PRK14268 245 REKS 248 (258)
T ss_pred CCHH
Confidence 4444
No 141
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9.3e-42 Score=363.06 Aligned_cols=207 Identities=39% Similarity=0.602 Sum_probs=171.6
Q ss_pred EEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhee
Q 001438 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (1077)
Q Consensus 382 i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 461 (1077)
++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.+.+. .+++++
T Consensus 1 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~--~~~~i~ 75 (213)
T cd03259 1 LELKGLSKTYGS---VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPP--ERRNIG 75 (213)
T ss_pred CeeeeeEEEeCC---eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCch--hhccEE
Confidence 478999999964 358999999999999999999999999999999999999999999999999876543 466899
Q ss_pred EEccCCCccc-ccHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccC
Q 001438 462 LVNQEPALFA-TTIRENILYGKDD--ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKN 538 (1077)
Q Consensus 462 ~v~Q~~~lf~-~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~ 538 (1077)
|+||++.+|+ .|++||+.++... ...++..+. ..+.++.+ |++........+||||||||++|||||+.+
T Consensus 76 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LSgG~~qrl~la~al~~~ 148 (213)
T cd03259 76 MVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRAR-----VRELLELV--GLEGLLNRYPHELSGGQQQRVALARALARE 148 (213)
T ss_pred EEcCchhhccCCcHHHHHHhHHHHcCCCHHHHHHH-----HHHHHHHc--CChhhhhcChhhCCHHHHHHHHHHHHHhcC
Confidence 9999999886 4999999875321 112211111 11222222 344445566778999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEccCchhHhh-cCEEEEEECCEEEEec
Q 001438 539 PSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTG 600 (1077)
Q Consensus 539 p~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g 600 (1077)
|+++||||||++||+.+++.+.+.|+++. .++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 149 p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 149 PSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999998874 38999999999998765 9999999999998765
No 142
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=100.00 E-value=1.9e-41 Score=386.55 Aligned_cols=214 Identities=25% Similarity=0.471 Sum_probs=184.6
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhe
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 460 (1077)
.++++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.+++...+++++
T Consensus 3 ~L~~~nls~~y~~---~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~i 79 (402)
T PRK09536 3 MIDVSDLSVEFGD---TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRV 79 (402)
T ss_pred eEEEeeEEEEECC---EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcce
Confidence 4899999999974 4699999999999999999999999999999999999999999999999999998888899999
Q ss_pred eEEccCCCc-ccccHHHHHhcCCCCC-------CH---HHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHH
Q 001438 461 GLVNQEPAL-FATTIRENILYGKDDA-------TM---EEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRI 529 (1077)
Q Consensus 461 ~~v~Q~~~l-f~~ti~~ni~~~~~~~-------~~---~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri 529 (1077)
|||+|++.+ ++.|++||+.++.... .. +.+.++++.. |+.........+||||||||+
T Consensus 80 g~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~v-----------gl~~~~~~~~~~LSgGerQRv 148 (402)
T PRK09536 80 ASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERT-----------GVAQFADRPVTSLSGGERQRV 148 (402)
T ss_pred EEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHc-----------CCchhhcCChhhCCHHHHHHH
Confidence 999999987 5679999999875211 11 1122222222 222233455678999999999
Q ss_pred HHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHh-hcCEEEEEECCEEEEecChhHHhc
Q 001438 530 AISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIR-NADVIAVVQGRKIVKTGSHEELIS 607 (1077)
Q Consensus 530 ~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~ 607 (1077)
+|||||+++|++|||||||++||+.++..+++.|+++. +++|+|++||+++.+. .|||+++|++|++++.|+++|++.
T Consensus 149 ~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~~ 228 (402)
T PRK09536 149 LLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLT 228 (402)
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHhC
Confidence 99999999999999999999999999999999999875 5889999999999985 599999999999999999999886
Q ss_pred C
Q 001438 608 N 608 (1077)
Q Consensus 608 ~ 608 (1077)
.
T Consensus 229 ~ 229 (402)
T PRK09536 229 A 229 (402)
T ss_pred c
Confidence 4
No 143
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=1e-41 Score=363.51 Aligned_cols=207 Identities=31% Similarity=0.531 Sum_probs=169.4
Q ss_pred EEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHH---HHhh
Q 001438 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLK---WLRQ 458 (1077)
Q Consensus 382 i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~---~~r~ 458 (1077)
++++|++++|++. ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+.. .+|+
T Consensus 2 l~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (216)
T TIGR00960 2 IRFEQVSKAYPGG-HQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRR 80 (216)
T ss_pred eEEEEEEEEecCC-CeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHH
Confidence 6899999999642 23589999999999999999999999999999999999999999999999998766543 4678
Q ss_pred heeEEccCCCcccc-cHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHh
Q 001438 459 QIGLVNQEPALFAT-TIRENILYGKDD--ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAI 535 (1077)
Q Consensus 459 ~i~~v~Q~~~lf~~-ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal 535 (1077)
+++|++|++.+|.. |++||+.++... ...++..+ +.... ++.+ |+.........+||||||||++||||+
T Consensus 81 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~--~~~~~---l~~~--~l~~~~~~~~~~LSgG~~qrv~laral 153 (216)
T TIGR00960 81 HIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANE--RVSAA---LEKV--GLEGKAHALPMQLSGGEQQRVAIARAI 153 (216)
T ss_pred hceEEecCccccccccHHHHHHHHHHhcCCCHHHHHH--HHHHH---HHHc--CChhhhhCChhhCCHHHHHHHHHHHHH
Confidence 89999999998875 999999875311 11111111 11111 2222 233334456678999999999999999
Q ss_pred ccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHhh-cCEEEEEECCEE
Q 001438 536 VKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKI 596 (1077)
Q Consensus 536 ~~~p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i 596 (1077)
+.+|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||++++|++|++
T Consensus 154 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 154 VHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred hcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999998874 48999999999999875 999999999975
No 144
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=100.00 E-value=3e-41 Score=366.99 Aligned_cols=214 Identities=35% Similarity=0.562 Sum_probs=179.5
Q ss_pred EEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCH---HHHhh
Q 001438 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDL---KWLRQ 458 (1077)
Q Consensus 382 i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~---~~~r~ 458 (1077)
++++|++++|+. +.++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+. ..+|+
T Consensus 2 l~~~~l~~~~~~--~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (243)
T TIGR02315 2 LEVENLSKVYPN--GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRR 79 (243)
T ss_pred eEEEeeeeecCC--CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHh
Confidence 689999999962 2358999999999999999999999999999999999999999999999999877654 34678
Q ss_pred heeEEccCCCccc-ccHHHHHhcCCCCC-----------CHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHH
Q 001438 459 QIGLVNQEPALFA-TTIRENILYGKDDA-----------TMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQK 526 (1077)
Q Consensus 459 ~i~~v~Q~~~lf~-~ti~~ni~~~~~~~-----------~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqk 526 (1077)
+++|+||++.+|+ .|++||+.++.... ..+.. .+. .+.++.+ |+.......+.+||||||
T Consensus 80 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~---~~~l~~~--~l~~~~~~~~~~LSgG~~ 151 (243)
T TIGR02315 80 RIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDK---ERA---LSALERV--GLADKAYQRADQLSGGQQ 151 (243)
T ss_pred heEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHH---HHH---HHHHHHc--CcHhhhcCCcccCCHHHH
Confidence 8999999999887 49999998764211 11111 111 1222222 344455667789999999
Q ss_pred HHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChh
Q 001438 527 QRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHE 603 (1077)
Q Consensus 527 qri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~ 603 (1077)
||++||||++.+|+++||||||++||+.+.+.+.+.|+++. .++|+|++||+++.+.. ||++++|++|++++.|+++
T Consensus 152 qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~ 231 (243)
T TIGR02315 152 QRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGAPS 231 (243)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecCCHH
Confidence 99999999999999999999999999999999999998874 37899999999999854 9999999999999999998
Q ss_pred HH
Q 001438 604 EL 605 (1077)
Q Consensus 604 ~l 605 (1077)
++
T Consensus 232 ~~ 233 (243)
T TIGR02315 232 EL 233 (243)
T ss_pred Hh
Confidence 86
No 145
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.3e-41 Score=373.81 Aligned_cols=222 Identities=32% Similarity=0.512 Sum_probs=180.5
Q ss_pred EEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHH----hh
Q 001438 383 EFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWL----RQ 458 (1077)
Q Consensus 383 ~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~----r~ 458 (1077)
.++|+++.|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+ ++
T Consensus 26 ~~~~~~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~ 102 (269)
T cd03294 26 SKEEILKKTGQ---TVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRK 102 (269)
T ss_pred hhhhhhhhcCC---ceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcC
Confidence 45678888863 358999999999999999999999999999999999999999999999999987765443 35
Q ss_pred heeEEccCCCccc-ccHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHh
Q 001438 459 QIGLVNQEPALFA-TTIRENILYGKD--DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAI 535 (1077)
Q Consensus 459 ~i~~v~Q~~~lf~-~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal 535 (1077)
+++|+||++.+|+ .|++||+.++.. ....++..+ +.. +.++.+ |+.........+||||||||++||||+
T Consensus 103 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~--~~~---~~l~~~--~l~~~~~~~~~~LS~Gq~qrv~lAral 175 (269)
T cd03294 103 KISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREE--RAA---EALELV--GLEGWEHKYPDELSGGMQQRVGLARAL 175 (269)
T ss_pred cEEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHH--HHH---HHHHHc--CCHhHhhCCcccCCHHHHHHHHHHHHH
Confidence 7999999999985 599999987531 111111111 111 112222 333344556678999999999999999
Q ss_pred ccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHhcCCCch
Q 001438 536 VKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISNPNSA 612 (1077)
Q Consensus 536 ~~~p~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~~ 612 (1077)
+.+|++|||||||++||+.+.+.+.+.|+++. .|+|+|++||+++.+.. ||++++|++|++++.|+++++.+++...
T Consensus 176 ~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~ 255 (269)
T cd03294 176 AVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTNPAND 255 (269)
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHhCcCcH
Confidence 99999999999999999999999999998874 37999999999998765 9999999999999999999998765544
Q ss_pred HH
Q 001438 613 YA 614 (1077)
Q Consensus 613 ~~ 614 (1077)
|.
T Consensus 256 ~~ 257 (269)
T cd03294 256 YV 257 (269)
T ss_pred HH
Confidence 44
No 146
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.1e-41 Score=367.22 Aligned_cols=227 Identities=32% Similarity=0.489 Sum_probs=185.2
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCC-----CccEEEECCeeCCCCCHHH
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEP-----LSGEILLDGNNIKGLDLKW 455 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~-----~~G~i~~~g~~~~~~~~~~ 455 (1077)
.++++|++++|++ .++++|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++...+...
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 79 (250)
T PRK14247 3 KIEIRDLKVSFGQ---VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIE 79 (250)
T ss_pred eEEEEeeEEEECC---eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHH
Confidence 4899999999964 3589999999999999999999999999999999999974 6999999999998877778
Q ss_pred HhhheeEEccCCCcc-cccHHHHHhcCCCC----CCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHH
Q 001438 456 LRQQIGLVNQEPALF-ATTIRENILYGKDD----ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIA 530 (1077)
Q Consensus 456 ~r~~i~~v~Q~~~lf-~~ti~~ni~~~~~~----~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~ 530 (1077)
+|+.|+|+||++.+| +.|++||+.++... ...++..+ +.....+.+ .+.+..+........+||||||||++
T Consensus 80 ~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~--~~~~~l~~~-~l~~~~~~~~~~~~~~LSgG~~qrv~ 156 (250)
T PRK14247 80 LRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQE--RVRWALEKA-QLWDEVKDRLDAPAGKLSGGQQQRLC 156 (250)
T ss_pred HhccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHH--HHHHHHHHc-CCCcchhhhhcCCcccCCHHHHHHHH
Confidence 888999999999866 56999999875321 11111111 111122211 12221223345667799999999999
Q ss_pred HHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHh-hcCEEEEEECCEEEEecChhHHhcCC
Q 001438 531 ISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIR-NADVIAVVQGRKIVKTGSHEELISNP 609 (1077)
Q Consensus 531 lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~~ 609 (1077)
||||++++|+++||||||++||+.+++.+.+.|+++.+++|+|++||+++.+. .||+|++|++|++++.|+++++.+.+
T Consensus 157 laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 236 (250)
T PRK14247 157 IARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREVFTNP 236 (250)
T ss_pred HHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCHHHHHcCC
Confidence 99999999999999999999999999999999998877899999999999985 59999999999999999999987654
Q ss_pred CchH
Q 001438 610 NSAY 613 (1077)
Q Consensus 610 ~~~~ 613 (1077)
...+
T Consensus 237 ~~~~ 240 (250)
T PRK14247 237 RHEL 240 (250)
T ss_pred ccHH
Confidence 4333
No 147
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=100.00 E-value=3.1e-41 Score=364.64 Aligned_cols=216 Identities=26% Similarity=0.497 Sum_probs=181.8
Q ss_pred EEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhee
Q 001438 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (1077)
Q Consensus 382 i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 461 (1077)
++++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... +++++
T Consensus 2 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~-~~~i~ 77 (236)
T TIGR03864 2 LEVAGLSFAYGA---RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAA-LARLG 77 (236)
T ss_pred EEEEeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhh-hhhEE
Confidence 689999999963 35899999999999999999999999999999999999999999999999987766543 45899
Q ss_pred EEccCCCcc-cccHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccC
Q 001438 462 LVNQEPALF-ATTIRENILYGKDD--ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKN 538 (1077)
Q Consensus 462 ~v~Q~~~lf-~~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~ 538 (1077)
|++|++.++ ..|++||+.++... ...++..+ + ..+.++.+ |++...+....+||||||||++||||++.+
T Consensus 78 ~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~--~---~~~~l~~~--gl~~~~~~~~~~LS~G~~qrl~laral~~~ 150 (236)
T TIGR03864 78 VVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARE--R---IAALLARL--GLAERADDKVRELNGGHRRRVEIARALLHR 150 (236)
T ss_pred EeCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHH--H---HHHHHHHc--CChhhhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 999999885 56999999875321 12221111 1 12223332 445556677789999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEccCchhHhhcCEEEEEECCEEEEecChhHHhcC
Q 001438 539 PSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISN 608 (1077)
Q Consensus 539 p~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 608 (1077)
|+++||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+..||+|++|++|++++.|+++++.+.
T Consensus 151 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 222 (236)
T TIGR03864 151 PALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRGA 222 (236)
T ss_pred CCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEEeCCHHHHHHH
Confidence 99999999999999999999999999875 48999999999999888999999999999999999988754
No 148
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.3e-41 Score=369.61 Aligned_cols=226 Identities=33% Similarity=0.534 Sum_probs=185.4
Q ss_pred cccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCC-----CccEEEECCeeCCC--C
Q 001438 379 SGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEP-----LSGEILLDGNNIKG--L 451 (1077)
Q Consensus 379 ~~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~-----~~G~i~~~g~~~~~--~ 451 (1077)
.+.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|+++|+++.. .
T Consensus 17 ~~~l~~~nl~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~ 93 (267)
T PRK14235 17 EIKMRARDVSVFYGE---KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRL 93 (267)
T ss_pred CceEEEEeEEEEECC---EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECccccc
Confidence 457999999999963 3589999999999999999999999999999999999975 89999999999864 3
Q ss_pred CHHHHhhheeEEccCCCcccccHHHHHhcCCC--CC--CHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHH
Q 001438 452 DLKWLRQQIGLVNQEPALFATTIRENILYGKD--DA--TMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQ 527 (1077)
Q Consensus 452 ~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~--~~--~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkq 527 (1077)
+...+|++++|++|+|.+|+.|++||+.++.. .. ..++..+ +.....+.+ .+++.+.+..+..+.+|||||||
T Consensus 94 ~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~--~~~~~l~~~-~l~~~~~~~~~~~~~~LSgGq~q 170 (267)
T PRK14235 94 DVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDE--IVETSLRKA-GLWEEVKDRLHEPGTGLSGGQQQ 170 (267)
T ss_pred chHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHH--HHHHHHHHc-CCchhhhHHhhCCcccCCHHHHH
Confidence 45567889999999999998899999987531 11 1111111 111111211 22222223456677899999999
Q ss_pred HHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHh
Q 001438 528 RIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELI 606 (1077)
Q Consensus 528 ri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~ 606 (1077)
|++||||++.+|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+++++.
T Consensus 171 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 250 (267)
T PRK14235 171 RLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDTEKMF 250 (267)
T ss_pred HHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999988778899999999999865 9999999999999999999987
Q ss_pred cCCC
Q 001438 607 SNPN 610 (1077)
Q Consensus 607 ~~~~ 610 (1077)
.++.
T Consensus 251 ~~~~ 254 (267)
T PRK14235 251 TNPD 254 (267)
T ss_pred hCCC
Confidence 6533
No 149
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6e-41 Score=368.61 Aligned_cols=228 Identities=29% Similarity=0.512 Sum_probs=186.5
Q ss_pred ccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccC-----CCccEEEECCeeCCC--CC
Q 001438 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYE-----PLSGEILLDGNNIKG--LD 452 (1077)
Q Consensus 380 ~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~-----~~~G~i~~~g~~~~~--~~ 452 (1077)
..|+++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.. .+
T Consensus 12 ~~l~i~nl~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~ 88 (269)
T PRK14259 12 IIISLQNVTISYGT---FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVD 88 (269)
T ss_pred ceEEEEeEEEEECC---EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCC
Confidence 46999999999964 358999999999999999999999999999999999987 689999999999863 45
Q ss_pred HHHHhhheeEEccCCCcccccHHHHHhcCCCCCC-HHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHH
Q 001438 453 LKWLRQQIGLVNQEPALFATTIRENILYGKDDAT-MEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAI 531 (1077)
Q Consensus 453 ~~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~l 531 (1077)
..++|++++|+||++.+|+.|++||+.++..... ..+..+. .....+.+ .+..++++.......+||||||||++|
T Consensus 89 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~--~~~~l~~~-~l~~~l~~~~~~~~~~LS~G~~qrl~l 165 (269)
T PRK14259 89 PVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDEL--VERSLRKA-AVWDECKDKLNESGYSLSGGQQQRLCI 165 (269)
T ss_pred HHHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHH--HHHHHHHh-CCcchhhhhhCCCcccCCHHHHHHHHH
Confidence 6677889999999999998899999987642111 1111111 11111211 122233445566778999999999999
Q ss_pred HHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhh-cCEEEEEEC-----------CEEEEe
Q 001438 532 SRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQG-----------RKIVKT 599 (1077)
Q Consensus 532 ARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~-~d~i~~l~~-----------G~i~~~ 599 (1077)
|||++.+|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||++++|++ |++++.
T Consensus 166 aral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~g~~~~~ 245 (269)
T PRK14259 166 ARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKVGYLVEF 245 (269)
T ss_pred HHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeccccccccccccceEEEe
Confidence 99999999999999999999999999999999988778999999999998865 999999996 679999
Q ss_pred cChhHHhcCCCchH
Q 001438 600 GSHEELISNPNSAY 613 (1077)
Q Consensus 600 g~~~~l~~~~~~~~ 613 (1077)
|+++++..++...|
T Consensus 246 ~~~~~~~~~~~~~~ 259 (269)
T PRK14259 246 NETKKIFNSPKQKA 259 (269)
T ss_pred CCHHHHHhCcCChH
Confidence 99999987544333
No 150
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.3e-41 Score=385.68 Aligned_cols=210 Identities=35% Similarity=0.538 Sum_probs=174.3
Q ss_pred ccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHH----hhheeEEccCCCcccc-
Q 001438 398 AIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWL----RQQIGLVNQEPALFAT- 472 (1077)
Q Consensus 398 ~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~----r~~i~~v~Q~~~lf~~- 472 (1077)
.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++.+.+...+ |++++|++|++.+|+.
T Consensus 42 ~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~ 121 (400)
T PRK10070 42 LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHM 121 (400)
T ss_pred EEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCC
Confidence 37999999999999999999999999999999999999999999999999988776543 3579999999999975
Q ss_pred cHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCcCCC
Q 001438 473 TIRENILYGKDD--ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSA 550 (1077)
Q Consensus 473 ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~p~illlDEpts~ 550 (1077)
|++||+.++... ...++..+ +..++ ++.+ |++........+||||||||++|||||+.+|++|||||||++
T Consensus 122 Tv~enl~~~~~~~~~~~~~~~~--~~~e~---L~~~--gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~ 194 (400)
T PRK10070 122 TVLDNTAFGMELAGINAEERRE--KALDA---LRQV--GLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSA 194 (400)
T ss_pred CHHHHHHHHHHhcCCCHHHHHH--HHHHH---HHHc--CCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCcc
Confidence 999999886421 12222111 11112 2222 333445566779999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHh--CCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHhcCCCchHH
Q 001438 551 LDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISNPNSAYA 614 (1077)
Q Consensus 551 lD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~ 614 (1077)
||+.+++.+++.|.++. .++|+|++||+++.+.. ||+|++|++|++++.|+++++..++...|.
T Consensus 195 LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~~g~~~~l~~~~~~~~v 261 (400)
T PRK10070 195 LDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNNPANDYV 261 (400)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEEecCCHHHHHhCcccHHH
Confidence 99999999999998874 48999999999998754 999999999999999999999876554443
No 151
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=100.00 E-value=2.4e-41 Score=379.90 Aligned_cols=232 Identities=22% Similarity=0.408 Sum_probs=190.8
Q ss_pred cEEEEeEEEEcCCCC-CcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCC---ccEEEECCeeCCCCCHHHH
Q 001438 381 HIEFKDVSFCYPSRP-DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPL---SGEILLDGNNIKGLDLKWL 456 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~-~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~---~G~i~~~g~~~~~~~~~~~ 456 (1077)
.++++|+++.|+... ...+++|+||+|++||+++|+|+||||||||+++|+|+++|. +|+|.++|+++..++.+++
T Consensus 12 ~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~ 91 (330)
T PRK09473 12 LLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKEL 91 (330)
T ss_pred eEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHH
Confidence 589999999996432 246899999999999999999999999999999999999996 9999999999998887665
Q ss_pred h----hheeEEccCC--Ccccc-cHHHHHhcCC---CCCCHHHH-HHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHH
Q 001438 457 R----QQIGLVNQEP--ALFAT-TIRENILYGK---DDATMEEI-TRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQ 525 (1077)
Q Consensus 457 r----~~i~~v~Q~~--~lf~~-ti~~ni~~~~---~~~~~~~~-~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq 525 (1077)
+ ++|+||+|+| .+++. |+.+|+.... ...+.++. .++. ++.+.+ .++++. ..++..+.+|||||
T Consensus 92 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~---~~L~~v-gL~~~~-~~~~~~p~~LSgG~ 166 (330)
T PRK09473 92 NKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESV---RMLDAV-KMPEAR-KRMKMYPHEFSGGM 166 (330)
T ss_pred HHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHH---HHHHHc-CCCChH-HHhcCCcccCCHHH
Confidence 3 4799999999 45553 8888775321 11222222 2222 222322 455543 34677889999999
Q ss_pred HHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEccCchhHhh-cCEEEEEECCEEEEecCh
Q 001438 526 KQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSH 602 (1077)
Q Consensus 526 kqri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~ 602 (1077)
|||++|||||+.+|++||+||||++||..++..+.+.|+++.+ +.|+|+|||+++.+.. ||+|+||++|+|+|.|++
T Consensus 167 ~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~g~~ 246 (330)
T PRK09473 167 RQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEYGNA 246 (330)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 9999999999999999999999999999999999999988753 8899999999999875 999999999999999999
Q ss_pred hHHhcCCCchHHHHH
Q 001438 603 EELISNPNSAYAALV 617 (1077)
Q Consensus 603 ~~l~~~~~~~~~~~~ 617 (1077)
+++.+++...|.+..
T Consensus 247 ~~i~~~p~~pyt~~l 261 (330)
T PRK09473 247 RDVFYQPSHPYSIGL 261 (330)
T ss_pred HHHHhCCCCHHHHHH
Confidence 999988888887643
No 152
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.6e-41 Score=371.76 Aligned_cols=220 Identities=30% Similarity=0.517 Sum_probs=184.7
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhe
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 460 (1077)
.++++|++++|++. .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...+++.|
T Consensus 5 ~l~~~~l~~~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13635 5 IIRVEHISFRYPDA-ATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQV 83 (279)
T ss_pred eEEEEEEEEEeCCC-CccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhhe
Confidence 48999999999642 24599999999999999999999999999999999999999999999999999888777788899
Q ss_pred eEEccCC--CcccccHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhc
Q 001438 461 GLVNQEP--ALFATTIRENILYGKDD--ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIV 536 (1077)
Q Consensus 461 ~~v~Q~~--~lf~~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~ 536 (1077)
+|++|+| .+++.|++|||.++... ...++..+. ...+.+.+ |+...+.....+||||||||++||||++
T Consensus 84 ~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~--~~~~l~~~-----gL~~~~~~~~~~LS~G~~qrv~laral~ 156 (279)
T PRK13635 84 GMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVER--VDQALRQV-----GMEDFLNREPHRLSGGQKQRVAIAGVLA 156 (279)
T ss_pred EEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHH--HHHHHHHc-----CChhhhhCCcccCCHHHHHHHHHHHHHH
Confidence 9999998 35567999999886421 122222111 11111111 2333455566799999999999999999
Q ss_pred cCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEccCchhHhhcCEEEEEECCEEEEecChhHHhcC
Q 001438 537 KNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISN 608 (1077)
Q Consensus 537 ~~p~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 608 (1077)
.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+..||+|++|++|++++.|+++++...
T Consensus 157 ~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13635 157 LQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFKS 230 (279)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHhcC
Confidence 99999999999999999999999999998753 7999999999999888999999999999999999988754
No 153
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=100.00 E-value=2e-41 Score=365.74 Aligned_cols=216 Identities=28% Similarity=0.463 Sum_probs=181.5
Q ss_pred EEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHH-hhhe
Q 001438 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWL-RQQI 460 (1077)
Q Consensus 382 i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~-r~~i 460 (1077)
++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+.... |+.+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 77 (232)
T cd03218 1 LRAENLSKRYGK---RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGI 77 (232)
T ss_pred CeEEEEEEEeCC---EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccE
Confidence 478999999963 358999999999999999999999999999999999999999999999999887765543 5679
Q ss_pred eEEccCCCcccc-cHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhcc
Q 001438 461 GLVNQEPALFAT-TIRENILYGKDD--ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVK 537 (1077)
Q Consensus 461 ~~v~Q~~~lf~~-ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~ 537 (1077)
+|++|++.+|++ |++||+.++.+. ...++..+ + ..+.++.+ |++........+||||||||++||||++.
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~--~---~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~al~~ 150 (232)
T cd03218 78 GYLPQEASIFRKLTVEENILAVLEIRGLSKKEREE--K---LEELLEEF--HITHLRKSKASSLSGGERRRVEIARALAT 150 (232)
T ss_pred EEecCCccccccCcHHHHHHHHHHhcCCCHHHHHH--H---HHHHHHHc--CChhhhhCChhhCCHHHHHHHHHHHHHhc
Confidence 999999999987 999999875321 11111111 1 11223333 44555667778999999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHhc
Q 001438 538 NPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELIS 607 (1077)
Q Consensus 538 ~p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 607 (1077)
+|++|||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 151 ~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 222 (232)
T cd03218 151 NPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAA 222 (232)
T ss_pred CCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhhc
Confidence 999999999999999999999999998875 48899999999987765 99999999999999999988764
No 154
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.8e-41 Score=369.29 Aligned_cols=227 Identities=30% Similarity=0.475 Sum_probs=184.1
Q ss_pred ccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccC-----CCccEEEECCeeCCC--CC
Q 001438 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYE-----PLSGEILLDGNNIKG--LD 452 (1077)
Q Consensus 380 ~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~-----~~~G~i~~~g~~~~~--~~ 452 (1077)
..++++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.. .+
T Consensus 20 ~~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 96 (268)
T PRK14248 20 HILEVKDLSIYYGE---KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNIN 96 (268)
T ss_pred ceEEEEEEEEEeCC---ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEccccccc
Confidence 35999999999963 358999999999999999999999999999999999864 799999999999865 33
Q ss_pred HHHHhhheeEEccCCCcccccHHHHHhcCCCCC---CHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHH
Q 001438 453 LKWLRQQIGLVNQEPALFATTIRENILYGKDDA---TMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRI 529 (1077)
Q Consensus 453 ~~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~~~---~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri 529 (1077)
...++++++|++|++.+|++|++||+.++.... ......+. .....+.. .+..+.....+..+.+||||||||+
T Consensus 97 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~--~~~~l~~~-~l~~~~~~~~~~~~~~LSgGq~qrl 173 (268)
T PRK14248 97 VVNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEI--VEESLTKA-ALWDEVKDRLHSSALSLSGGQQQRL 173 (268)
T ss_pred HHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHH--HHHHHHHc-CCCcchHHHHhcCcccCCHHHHHHH
Confidence 456778899999999999999999998753211 11111111 11111111 1211222345667789999999999
Q ss_pred HHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHh-hcCEEEEEECCEEEEecChhHHhcC
Q 001438 530 AISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIR-NADVIAVVQGRKIVKTGSHEELISN 608 (1077)
Q Consensus 530 ~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 608 (1077)
+||||++.+|+++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+. .||+|++|++|++++.|+++++..+
T Consensus 174 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 253 (268)
T PRK14248 174 CIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQIFTS 253 (268)
T ss_pred HHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 999999999999999999999999999999999998876789999999999876 4999999999999999999998765
Q ss_pred CCch
Q 001438 609 PNSA 612 (1077)
Q Consensus 609 ~~~~ 612 (1077)
+...
T Consensus 254 ~~~~ 257 (268)
T PRK14248 254 PKQQ 257 (268)
T ss_pred CCCh
Confidence 4433
No 155
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.1e-41 Score=367.93 Aligned_cols=223 Identities=30% Similarity=0.468 Sum_probs=183.4
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCC-----CccEEEECCeeCC--CCCH
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEP-----LSGEILLDGNNIK--GLDL 453 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~-----~~G~i~~~g~~~~--~~~~ 453 (1077)
.++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|+++. +.+.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (253)
T PRK14267 4 AIETVNLRVYYGS---NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDP 80 (253)
T ss_pred eEEEEeEEEEeCC---eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccCh
Confidence 4899999999964 3589999999999999999999999999999999999987 4999999999987 4455
Q ss_pred HHHhhheeEEccCCCcccc-cHHHHHhcCCC--C--CCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHH
Q 001438 454 KWLRQQIGLVNQEPALFAT-TIRENILYGKD--D--ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQR 528 (1077)
Q Consensus 454 ~~~r~~i~~v~Q~~~lf~~-ti~~ni~~~~~--~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqr 528 (1077)
..+|++++|++|++.+|+. |++||+.++.. . ...++..+. ...+.+.+ .+.............+||||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~--~~~~l~~~-~l~~~~~~~~~~~~~~LS~G~~qr 157 (253)
T PRK14267 81 IEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDER--VEWALKKA-ALWDEVKDRLNDYPSNLSGGQRQR 157 (253)
T ss_pred HHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHH--HHHHHHHc-CCccchhhhhccChhhCCHHHHHH
Confidence 6678899999999999976 99999987531 1 112221111 11122211 121122234556778999999999
Q ss_pred HHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHhc
Q 001438 529 IAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELIS 607 (1077)
Q Consensus 529 i~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 607 (1077)
++||||++++|+++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 158 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 237 (253)
T PRK14267 158 LVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTRKVFE 237 (253)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999999999999999988778999999999999765 99999999999999999999876
Q ss_pred CC
Q 001438 608 NP 609 (1077)
Q Consensus 608 ~~ 609 (1077)
++
T Consensus 238 ~~ 239 (253)
T PRK14267 238 NP 239 (253)
T ss_pred CC
Confidence 53
No 156
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.1e-41 Score=373.39 Aligned_cols=219 Identities=26% Similarity=0.506 Sum_probs=182.9
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCC--CCCHHHHhh
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIK--GLDLKWLRQ 458 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~--~~~~~~~r~ 458 (1077)
.|+++|++++|++ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. ..+...+|+
T Consensus 5 ~l~~~~l~~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~ 82 (283)
T PRK13636 5 ILKVEELNYNYSD--GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRE 82 (283)
T ss_pred eEEEEeEEEEeCC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHh
Confidence 5899999999963 235999999999999999999999999999999999999999999999999985 334567888
Q ss_pred heeEEccCC--CcccccHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHH
Q 001438 459 QIGLVNQEP--ALFATTIRENILYGKDD--ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRA 534 (1077)
Q Consensus 459 ~i~~v~Q~~--~lf~~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARa 534 (1077)
.++|+||+| .+++.|++||+.++... .+.++..+. ...+.+ .+ |+.......+.+||||||||++||||
T Consensus 83 ~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~--~~~~l~---~~--gL~~~~~~~~~~LS~G~~qrl~lara 155 (283)
T PRK13636 83 SVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKR--VDNALK---RT--GIEHLKDKPTHCLSFGQKKRVAIAGV 155 (283)
T ss_pred hEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHH--HHHHHH---HC--CChhhhhCCcccCCHHHHHHHHHHHH
Confidence 999999998 56788999999875321 222222111 111212 11 33344556778999999999999999
Q ss_pred hccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEccCchhHh-hcCEEEEEECCEEEEecChhHHhcC
Q 001438 535 IVKNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIR-NADVIAVVQGRKIVKTGSHEELISN 608 (1077)
Q Consensus 535 l~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 608 (1077)
|+.+|++|||||||++||+.+...+.+.|+++.+ |+|+|++||+++.+. .||++++|++|++++.|+++++.+.
T Consensus 156 L~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 232 (283)
T PRK13636 156 LVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAE 232 (283)
T ss_pred HHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999999999999999988753 899999999999986 5999999999999999999998764
No 157
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=9.5e-39 Score=391.74 Aligned_cols=387 Identities=15% Similarity=0.137 Sum_probs=308.0
Q ss_pred HHHHHhhcccchHHHHHHHHHHHHHhhHHhHHHHHHHHHHHhhccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 684 AIKLYSMVRPDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYYMDWDTTQREVKKITILFCCAAVITVIVHAIEHLSFG 763 (1077)
Q Consensus 684 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 763 (1077)
..+++++.+|+++.+..++++.++..+..+..++.+..+++........ ......+...++++.++..++.+++.+...
T Consensus 10 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (588)
T PRK11174 10 TRWLKQQSKPAKRWLNLSILLGFLSGLLLIAQAWLLATILQALIIENIP-REALLPPFILLILLFVLRALLAWLRERVGF 88 (588)
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457778889888888888888888888888888888888765321111 112222334455556667778888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCccccccccCCchhHHHHHhhcHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 001438 764 IMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQNFGLVTASFVIAFILNWRIT 843 (1077)
Q Consensus 764 ~~~~~~~~~Lr~~l~~~llr~p~~FFD~~~~~~G~IlnR~s~D~~~i~~~l~~~l~~~~~~~~~~~~~i~i~~~~~w~l~ 843 (1077)
..+.++..++|.++|+++++.|.+||++ +++|++++|+++|++.+++.+...+..++..++.+++.++++++++|+++
T Consensus 89 ~~~~~~~~~lr~~~~~~ll~~~~~~~~~--~~~g~l~s~~~~dv~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~ 166 (588)
T PRK11174 89 KAGQHIRQQIRQQVLDKLQQLGPAWIQG--KPAGSWATLVLEQVEDMHDFYARYLPQMALAVLVPLLILIAVFPINWAAG 166 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCchhhcc--CCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999995 99999999999999999999999999999998899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHcchHHHHHhcchHHHHHHHHHHhhhhhHHHHHHHHHH
Q 001438 844 LVVVATYPLIISGHISEKLFFQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRSFIRGQIA 923 (1077)
Q Consensus 844 l~~l~~~Pl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Etl~Gi~tIrAf~~e~~~~~~f~~~~~~~~~~~~~~~~~~ 923 (1077)
+++++++|+.++......+..++..++.++...+.+..+.|.++|+++||+|++|+++.++|.+..++..+...+.....
T Consensus 167 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (588)
T PRK11174 167 LILLGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESIRSASEDFRQRTMEVLRMA 246 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988877777777777777888888899999999999999999999999999999999998888777766666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHH---------HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 001438 924 GIFYGISQFFIFSSYGLALWYGSVLMGKELASFKSV---------MKSFMVLIVTALAMGETLALVPDLLKGNQMAASVF 994 (1077)
Q Consensus 924 ~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~ 994 (1077)
+...++...+......++.++++... .|.+++|.+ +.+..+......|+..+......++++..+.+|+.
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~ 325 (588)
T PRK11174 247 FLSSAVLEFFASISIALVAVYFGFSY-LGELNFGHYGTGVTLFAGFFVLILAPEFYQPLRDLGTFYHAKAQAVGAAESLV 325 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-hcccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666555555555545554443 266666543 11223333456788888888999999999999999
Q ss_pred HHHcCCCCccCCCCcccc-cccccEEEeeeeeeCCCCCcccccccceeeeeCCCEEEEECCCCCCHHHHHHHHhhccCCC
Q 001438 995 EVLDRKTQVIGDIGEELT-NVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPT 1073 (1077)
Q Consensus 995 ~~l~~~~~~~~~~~~~~~-~~~G~I~f~nVsf~Y~~~~~~~VLk~vsl~I~~GekVaIVGrTGsGKSTLi~lL~Rfyd~~ 1073 (1077)
++++.+++.+.....+.+ +..++|+|+||+|.|+++ .+||+|+||+|+|||++|||||||||||||+++|.|+| |+
T Consensus 326 ~~l~~~~~~~~~~~~~~~~~~~~~i~~~~vsf~~~~~--~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~ 402 (588)
T PRK11174 326 TFLETPLAHPQQGEKELASNDPVTIEAEDLEILSPDG--KTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PY 402 (588)
T ss_pred HHHcCCCcccCCCccccCCCCCceEEEEeeEEeccCC--CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CC
Confidence 999876542221111111 235689999999988643 45899999999999999999999999999999999999 99
Q ss_pred CCCC
Q 001438 1074 AGKA 1077 (1077)
Q Consensus 1074 ~G~i 1077 (1077)
+|+|
T Consensus 403 ~G~I 406 (588)
T PRK11174 403 QGSL 406 (588)
T ss_pred CcEE
Confidence 9986
No 158
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5e-41 Score=368.14 Aligned_cols=227 Identities=30% Similarity=0.500 Sum_probs=185.3
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccC--C---CccEEEECCeeCCC--CCH
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYE--P---LSGEILLDGNNIKG--LDL 453 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~--~---~~G~i~~~g~~~~~--~~~ 453 (1077)
.|+++|+++.|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++ | ++|+|.++|+++.. .+.
T Consensus 12 ~l~i~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~ 88 (259)
T PRK14274 12 VYQINGMNLWYGQ---HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDL 88 (259)
T ss_pred eEEEeeEEEEECC---eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCH
Confidence 5899999999974 358999999999999999999999999999999999997 3 59999999999864 345
Q ss_pred HHHhhheeEEccCCCcccccHHHHHhcCCCC---CCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHH
Q 001438 454 KWLRQQIGLVNQEPALFATTIRENILYGKDD---ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIA 530 (1077)
Q Consensus 454 ~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~~---~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~ 530 (1077)
..+|+.++|+||++.+|+.|++||+.++... ...++..+.+ ....+.+ .+.+.+.+.....+.+||||||||++
T Consensus 89 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~--~~~l~~~-~l~~~~~~~l~~~~~~LS~Gq~qrv~ 165 (259)
T PRK14274 89 VELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIV--EKSLKDV-ALWDEVKDRLHTQALSLSGGQQQRLC 165 (259)
T ss_pred HHHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHH--HHHHHHc-CCchhhhhhhhCCcccCCHHHHHHHH
Confidence 5678889999999999989999999875321 1122221111 1111111 12222223456677899999999999
Q ss_pred HHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHhcCC
Q 001438 531 ISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISNP 609 (1077)
Q Consensus 531 lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 609 (1077)
||||++.+|+++||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+++++..++
T Consensus 166 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 245 (259)
T PRK14274 166 IARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKMFSNP 245 (259)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCHHHHhhCC
Confidence 999999999999999999999999999999999998778999999999999865 9999999999999999999987654
Q ss_pred CchH
Q 001438 610 NSAY 613 (1077)
Q Consensus 610 ~~~~ 613 (1077)
...|
T Consensus 246 ~~~~ 249 (259)
T PRK14274 246 DDQR 249 (259)
T ss_pred CCHH
Confidence 4433
No 159
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=100.00 E-value=2.3e-41 Score=361.63 Aligned_cols=211 Identities=26% Similarity=0.470 Sum_probs=175.1
Q ss_pred EEEEeEEEEcCCCCC-cccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhe
Q 001438 382 IEFKDVSFCYPSRPD-VAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (1077)
Q Consensus 382 i~~~~v~~~y~~~~~-~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 460 (1077)
++++|++++|++... .++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. ...++|+++
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-~~~~~~~~i 80 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVK-EPAEARRRL 80 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEccc-CHHHHHhhE
Confidence 689999999975311 259999999999999999999999999999999999999999999999999875 345678899
Q ss_pred eEEccCCCcccc-cHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhcc
Q 001438 461 GLVNQEPALFAT-TIRENILYGKD--DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVK 537 (1077)
Q Consensus 461 ~~v~Q~~~lf~~-ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~ 537 (1077)
+|+||++.+|+. |++||+.+... ....++..+ +.. +.++.+ |++........+||||||||++||||++.
T Consensus 81 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~--~~~---~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral~~ 153 (218)
T cd03266 81 GFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTA--RLE---ELADRL--GMEELLDRRVGGFSTGMRQKVAIARALVH 153 (218)
T ss_pred EEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHH--HHH---HHHHHc--CCHHHHhhhhhhcCHHHHHHHHHHHHHhc
Confidence 999999999986 99999976421 112222111 111 122222 44455566778999999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHhh-cCEEEEEECCEEEEec
Q 001438 538 NPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTG 600 (1077)
Q Consensus 538 ~p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g 600 (1077)
+|+++||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 154 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 154 DPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred CCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence 999999999999999999999999998874 58999999999998765 9999999999998764
No 160
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=100.00 E-value=2.9e-41 Score=381.92 Aligned_cols=212 Identities=30% Similarity=0.493 Sum_probs=173.1
Q ss_pred cccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCe----eCCCCCHHHH---h-hheeEEccCCC
Q 001438 397 VAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGN----NIKGLDLKWL---R-QQIGLVNQEPA 468 (1077)
Q Consensus 397 ~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~----~~~~~~~~~~---r-~~i~~v~Q~~~ 468 (1077)
..+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+ ++...+...+ | ++++||+|++.
T Consensus 37 ~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~ 116 (382)
T TIGR03415 37 VVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFA 116 (382)
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCc
Confidence 35799999999999999999999999999999999999999999999997 5666665443 3 57999999999
Q ss_pred ccc-ccHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccCCCEEEEe
Q 001438 469 LFA-TTIRENILYGKDD--ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLD 545 (1077)
Q Consensus 469 lf~-~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~p~illlD 545 (1077)
+|+ .|++||+.++... ...++..+ +..++.+.+ |++........+||||||||++|||||+.+|+|||||
T Consensus 117 l~p~~Tv~eNi~~~~~~~g~~~~~~~~--~a~e~le~v-----gL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLlD 189 (382)
T TIGR03415 117 LMPWLTVEENVAFGLEMQGMPEAERRK--RVDEQLELV-----GLAQWADKKPGELSGGMQQRVGLARAFAMDADILLMD 189 (382)
T ss_pred CCCCCcHHHHHHHHHHhcCCCHHHHHH--HHHHHHHHc-----CCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 998 5999999987421 12221111 111121211 2333344566789999999999999999999999999
Q ss_pred CcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEccCchhHh-hcCEEEEEECCEEEEecChhHHhcCCCchHHH
Q 001438 546 EATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIR-NADVIAVVQGRKIVKTGSHEELISNPNSAYAA 615 (1077)
Q Consensus 546 Epts~lD~~~~~~i~~~l~~~~~--~~t~i~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~ 615 (1077)
||||+||+.+++.+++.|.++.+ ++|+|+|||+++.+. .||+|++|++|++++.|+++|++.++...|.+
T Consensus 190 EPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~~p~~~~~~ 262 (382)
T TIGR03415 190 EPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLNPANDYVA 262 (382)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhhCcchHHHH
Confidence 99999999999999999988753 899999999999875 59999999999999999999998765555543
No 161
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.6e-41 Score=363.42 Aligned_cols=214 Identities=29% Similarity=0.465 Sum_probs=177.5
Q ss_pred cEEEEeEEEEcCCCC-CcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHH---H
Q 001438 381 HIEFKDVSFCYPSRP-DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKW---L 456 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~-~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~---~ 456 (1077)
.++++|++++|++.. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++...+... +
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 84 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAEL 84 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHH
Confidence 489999999997432 146899999999999999999999999999999999999999999999999998877543 3
Q ss_pred h-hheeEEccCCCcccc-cHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHH
Q 001438 457 R-QQIGLVNQEPALFAT-TIRENILYGKD--DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAIS 532 (1077)
Q Consensus 457 r-~~i~~v~Q~~~lf~~-ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lA 532 (1077)
| +.++|++|++.+|+. |++||+.++.. ....++..+ +.... ++.+ |++........+||||||||++||
T Consensus 85 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~--~~~~~---l~~~--gl~~~~~~~~~~LSgG~~qrl~la 157 (233)
T PRK11629 85 RNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINS--RALEM---LAAV--GLEHRANHRPSELSGGERQRVAIA 157 (233)
T ss_pred HhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHH--HHHHH---HHHc--CCchhhhCChhhCCHHHHHHHHHH
Confidence 3 579999999999876 99999987421 112222111 11112 2222 344445667789999999999999
Q ss_pred HHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEccCchhHhhcCEEEEEECCEEEEecC
Q 001438 533 RAIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGS 601 (1077)
Q Consensus 533 Ral~~~p~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~~~~d~i~~l~~G~i~~~g~ 601 (1077)
||++.+|+++||||||++||+.+.+.+.+.|+++. +|+|+|++||+++.+..+|++++|++|++++.|+
T Consensus 158 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G~i~~~~~ 228 (233)
T PRK11629 158 RALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAELS 228 (233)
T ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECCEEEEEec
Confidence 99999999999999999999999999999998874 4899999999999998889999999999998875
No 162
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=1.7e-38 Score=387.13 Aligned_cols=381 Identities=23% Similarity=0.360 Sum_probs=324.6
Q ss_pred HHHhhcccchHHHHHHHHHHHHHhhHHhHHHHHHHHHHHhhccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 686 KLYSMVRPDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYYMDWDTTQREVKKITILFCCAAVITVIVHAIEHLSFGIM 765 (1077)
Q Consensus 686 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 765 (1077)
+++.+.+ ++ .+..+.++.++........++.....++..+.. ......+..+++++.++..++.++..+...+.
T Consensus 6 ~l~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 79 (567)
T COG1132 6 RLLKYLK-YK-LLLLAILLLLLSALLSLLLPLLIGRIIDALLAD----LGELLELLLLLLLLALLGGVLRALQSYLGSRL 79 (567)
T ss_pred HHHHHHH-HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444 45 556666666666666666677777777666521 12223334455555666777778888888888
Q ss_pred HHHHHHHHHHHHHHHHHcCCccccccccCCchhHHHHHhhcHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 001438 766 GERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQNFGLVTASFVIAFILNWRITLV 845 (1077)
Q Consensus 766 ~~~~~~~Lr~~l~~~llr~p~~FFD~~~~~~G~IlnR~s~D~~~i~~~l~~~l~~~~~~~~~~~~~i~i~~~~~w~l~l~ 845 (1077)
+.+...++|.++|+++++.|++|||+ +++|.+++|+++|++.++..+......+...++.+++.+++++..+|+++++
T Consensus 80 ~~~~~~~lr~~~~~~l~~~~~~~~~~--~~~g~l~~~~t~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~ 157 (567)
T COG1132 80 GQKIVADLRRDLFEKLLRLPLSFFDK--AKSGDLISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALI 157 (567)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHhCc--CCcchHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 89999999999999999999999995 9999999999999999999999986666667899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHcchHHHHHhcchHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 001438 846 VVATYPLIISGHISEKLFFQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRSFIRGQIAGI 925 (1077)
Q Consensus 846 ~l~~~Pl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Etl~Gi~tIrAf~~e~~~~~~f~~~~~~~~~~~~~~~~~~~~ 925 (1077)
++...|++.+...+..++.++..+..++...+.+..+.|+++|+++||+|+.|+...++|.+..+...+...+.....+.
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (567)
T COG1132 158 LLLILPLLALVLSLLARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEAL 237 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988888887778888888889999999999999999999999999999999999998888888887888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHcCCCCccC
Q 001438 926 FYGISQFFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLALVPDLLKGNQMAASVFEVLDRKTQVIG 1005 (1077)
Q Consensus 926 ~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~ 1005 (1077)
..+....+......+++++|+.++..+.++++.+..++.+......++..+......++.+..+++|++++++.++++.+
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~ 317 (567)
T COG1132 238 LAPLMLLLSSLGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPEVED 317 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccC
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999998776543
Q ss_pred CCCcccccccccEEEeeeeeeCCCCCcccccccceeeeeCCCEEEEECCCCCCHHHHHHHHhhccCCCCCCC
Q 001438 1006 DIGEELTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKA 1077 (1077)
Q Consensus 1006 ~~~~~~~~~~G~I~f~nVsf~Y~~~~~~~VLk~vsl~I~~GekVaIVGrTGsGKSTLi~lL~Rfyd~~~G~i 1077 (1077)
.... .+...|+|+|+||+|+|++ +.+||+|+||+|+|||+|||||||||||||++++|+|||||++|+|
T Consensus 318 ~~~~-~~~~~~~I~f~~vsf~y~~--~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I 386 (567)
T COG1132 318 PPDP-LKDTIGSIEFENVSFSYPG--KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEI 386 (567)
T ss_pred CCCC-CCCCCCeEEEEEEEEEcCC--CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeE
Confidence 2221 3345689999999999975 3468999999999999999999999999999999999999999986
No 163
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=100.00 E-value=3.8e-41 Score=370.49 Aligned_cols=227 Identities=29% Similarity=0.480 Sum_probs=184.9
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHH---HHh
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLK---WLR 457 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~---~~r 457 (1077)
.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+.. .++
T Consensus 7 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 83 (269)
T PRK11831 7 LVDMRGVSFTRGN---RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVR 83 (269)
T ss_pred eEEEeCeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHh
Confidence 5899999999963 3589999999999999999999999999999999999999999999999998776543 356
Q ss_pred hheeEEccCCCcccc-cHHHHHhcCCCC---CCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHH
Q 001438 458 QQIGLVNQEPALFAT-TIRENILYGKDD---ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISR 533 (1077)
Q Consensus 458 ~~i~~v~Q~~~lf~~-ti~~ni~~~~~~---~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lAR 533 (1077)
++++|++|++.+|+. |++||+.++... .+.++... +.... ++.+ |+.........+||||||||++|||
T Consensus 84 ~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~--~~~~~---l~~~--gl~~~~~~~~~~LSgGq~qrv~lar 156 (269)
T PRK11831 84 KRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHS--TVMMK---LEAV--GLRGAAKLMPSELSGGMARRAALAR 156 (269)
T ss_pred hcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHH--HHHHH---HHHc--CChhhhhCChhhCCHHHHHHHHHHH
Confidence 789999999999986 999999865311 11111111 11112 2222 2333344566789999999999999
Q ss_pred HhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHhcCCC
Q 001438 534 AIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISNPN 610 (1077)
Q Consensus 534 al~~~p~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~ 610 (1077)
|++.+|+++||||||++||+.+.+.+.+.|+++. +|+|+|++||+++.+.. ||+|++|++|++++.|+++++.+++.
T Consensus 157 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~ 236 (269)
T PRK11831 157 AIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQANPD 236 (269)
T ss_pred HHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHHhcCCc
Confidence 9999999999999999999999999999999874 37999999999998865 99999999999999999999986543
Q ss_pred chHHHHH
Q 001438 611 SAYAALV 617 (1077)
Q Consensus 611 ~~~~~~~ 617 (1077)
..+..++
T Consensus 237 ~~~~~~~ 243 (269)
T PRK11831 237 PRVRQFL 243 (269)
T ss_pred HHHHHHH
Confidence 3344443
No 164
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.8e-41 Score=371.01 Aligned_cols=221 Identities=29% Similarity=0.514 Sum_probs=185.0
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhe
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 460 (1077)
.++++|++++|++....++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|+++...+...+|+.+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence 48999999999743334589999999999999999999999999999999999999999999999999877777788899
Q ss_pred eEEccCCC--cccccHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhc
Q 001438 461 GLVNQEPA--LFATTIRENILYGKD--DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIV 536 (1077)
Q Consensus 461 ~~v~Q~~~--lf~~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~ 536 (1077)
+|++|+|. ++..|+.|||.++.. ....++..+.+ ..+.+.+ |+.........+||||||||++||||++
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~--~~~l~~~-----~l~~~~~~~~~~LS~G~~qrv~lAraL~ 156 (277)
T PRK13642 84 GMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRV--DEALLAV-----NMLDFKTREPARLSGGQKQRVAVAGIIA 156 (277)
T ss_pred EEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHH--HHHHHHC-----CCHhHhhCCcccCCHHHHHHHHHHHHHH
Confidence 99999984 567799999987532 22333322211 1111111 2222344566789999999999999999
Q ss_pred cCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEccCchhHhhcCEEEEEECCEEEEecChhHHhcC
Q 001438 537 KNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISN 608 (1077)
Q Consensus 537 ~~p~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 608 (1077)
.+|+++||||||++||+.+.+.+.+.|+++.+ |+|+|++||+++.+..||+|++|++|++++.|+++++...
T Consensus 157 ~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 230 (277)
T PRK13642 157 LRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFAT 230 (277)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999999999988753 8999999999999888999999999999999999998764
No 165
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7e-41 Score=365.40 Aligned_cols=227 Identities=32% Similarity=0.563 Sum_probs=184.8
Q ss_pred ccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCC-----CccEEEECCeeCCC--CC
Q 001438 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEP-----LSGEILLDGNNIKG--LD 452 (1077)
Q Consensus 380 ~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~-----~~G~i~~~g~~~~~--~~ 452 (1077)
+.|+++|+++.|++ .++++|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++.. .+
T Consensus 2 ~~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~ 78 (250)
T PRK14240 2 GKISVKDLDLFYGD---FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDID 78 (250)
T ss_pred CeEEEEEEEEEECC---ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence 35899999999974 3589999999999999999999999999999999999763 69999999999864 34
Q ss_pred HHHHhhheeEEccCCCcccccHHHHHhcCCCC--C-CHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHH
Q 001438 453 LKWLRQQIGLVNQEPALFATTIRENILYGKDD--A-TMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRI 529 (1077)
Q Consensus 453 ~~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~~--~-~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri 529 (1077)
...+|+.++|++|++.+|+.|++||+.++... . ..++..+. .....+.. .+.+++.......+.+||||||||+
T Consensus 79 ~~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~--~~~~l~~~-~l~~~l~~~~~~~~~~LS~G~~qrv 155 (250)
T PRK14240 79 VNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEI--VEKSLKGA-ALWDEVKDRLKKSALGLSGGQQQRL 155 (250)
T ss_pred hHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHH--HHHHHHHc-CCchhhHHHHhcCCCCCCHHHHHHH
Confidence 55678899999999999989999999876311 1 11111111 11111111 1222233445667789999999999
Q ss_pred HHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHhcC
Q 001438 530 AISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISN 608 (1077)
Q Consensus 530 ~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 608 (1077)
+||||++.+|+++||||||++||+.+++.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+++++..+
T Consensus 156 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 235 (250)
T PRK14240 156 CIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVDLFTN 235 (250)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 9999999999999999999999999999999999988778999999999998765 999999999999999999998765
Q ss_pred CCch
Q 001438 609 PNSA 612 (1077)
Q Consensus 609 ~~~~ 612 (1077)
+...
T Consensus 236 ~~~~ 239 (250)
T PRK14240 236 PKDK 239 (250)
T ss_pred CCCh
Confidence 4433
No 166
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=1.7e-38 Score=395.86 Aligned_cols=386 Identities=17% Similarity=0.251 Sum_probs=324.5
Q ss_pred HHHHhhcccchHHHHHHHHHHHHHhhHHhHHHHHHHHHHHhhccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 685 IKLYSMVRPDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYYMDWDTTQREVKKITILFCCAAVITVIVHAIEHLSFGI 764 (1077)
Q Consensus 685 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 764 (1077)
..++.+.+++++.+...++++++..+...+.|+.+..+++....... ......+...++++.++..++.+++.++...
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~p~~~~~iiD~~~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (694)
T TIGR03375 136 HWFWSTLKESWPLYRDVLIASLLINLLALASPLFVMNVYDRVVPNQA--FETLWVLAIGVALAIVFDFVLKTLRSYFLDV 213 (694)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCc--HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566677766666666666666667777777777776543211 1112223334444555677888899999999
Q ss_pred HHHHHHHHHHHHHHHHHHcCCccccccccCCchhHHHHHhhcHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 001438 765 MGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQNFGLVTASFVIAFILNWRITL 844 (1077)
Q Consensus 765 ~~~~~~~~Lr~~l~~~llr~p~~FFD~~~~~~G~IlnR~s~D~~~i~~~l~~~l~~~~~~~~~~~~~i~i~~~~~w~l~l 844 (1077)
.+.++..++|.++|+|+++.|++| + .+++|++++|+ +|++.+++.+...+...+..+..+++.++++++++|++++
T Consensus 214 ~~~~~~~~l~~~~~~~ll~l~~~~-~--~~~~G~~~~r~-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l 289 (694)
T TIGR03375 214 AGKKADLILSAKLFERVLGLRMEA-R--PASVGSFANQL-REFESVRDFFTSATLTALIDLPFALLFLLVIAIIGGPLVW 289 (694)
T ss_pred HHHHHHHHHHHHHHHHHhCCCccc-C--CCChhHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 999999999999999999999998 5 38999999999 7999999999888888888888888888889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHcchHHHHHhcchHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 001438 845 VVVATYPLIISGHISEKLFFQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRSFIRGQIAG 924 (1077)
Q Consensus 845 ~~l~~~Pl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Etl~Gi~tIrAf~~e~~~~~~f~~~~~~~~~~~~~~~~~~~ 924 (1077)
+.++.+|+.++...+..+++++..++..+...+..+.+.|+++|+++||+|+.|+.+.++|.+..++..+...+.....+
T Consensus 290 i~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (694)
T TIGR03375 290 VPLVAIPLILLPGLLLQRPLSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGLKSRFLSN 369 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988888888888888888888888889999999999999999999999999999999999888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHcCCCCcc
Q 001438 925 IFYGISQFFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLALVPDLLKGNQMAASVFEVLDRKTQVI 1004 (1077)
Q Consensus 925 ~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~ 1004 (1077)
....+.+.+..++..+++|+|+.++..|.+++|.++++..+......|+..+.....+++.+..+.+|+.++++.+++.+
T Consensus 370 ~~~~~~~~~~~~~~~~il~~g~~~v~~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~ 449 (694)
T TIGR03375 370 LATNFAQFIQQLVSVAIVVVGVYLISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQLPVERP 449 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 88888888888888889999999999999999999999999999999999999999999999999999999999876543
Q ss_pred CCCC-cccccccccEEEeeeeeeCCCCCcccccccceeeeeCCCEEEEECCCCCCHHHHHHHHhhccCCCCCCC
Q 001438 1005 GDIG-EELTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKA 1077 (1077)
Q Consensus 1005 ~~~~-~~~~~~~G~I~f~nVsf~Y~~~~~~~VLk~vsl~I~~GekVaIVGrTGsGKSTLi~lL~Rfyd~~~G~i 1077 (1077)
.... ...++.+|+|+|+||+|+||+. +.++|+|+||+|+|||+|||||+||||||||+++|.|+|+|++|+|
T Consensus 450 ~~~~~~~~~~~~~~I~~~~vsf~Y~~~-~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I 522 (694)
T TIGR03375 450 EGTRFLHRPRLQGEIEFRNVSFAYPGQ-ETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSV 522 (694)
T ss_pred CCCCCCCCCCccceEEEEEEEEEeCCC-CccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceE
Confidence 2211 1123356899999999999754 3468999999999999999999999999999999999999999975
No 167
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=1.7e-41 Score=362.67 Aligned_cols=208 Identities=36% Similarity=0.486 Sum_probs=171.5
Q ss_pred EEEEeEEEEcCCCC-CcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHH----H
Q 001438 382 IEFKDVSFCYPSRP-DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKW----L 456 (1077)
Q Consensus 382 i~~~~v~~~y~~~~-~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~----~ 456 (1077)
++++|++++|++.. ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+... .
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 47899999996421 136899999999999999999999999999999999999999999999999988766432 4
Q ss_pred hhheeEEccCCCcccc-cHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHH
Q 001438 457 RQQIGLVNQEPALFAT-TIRENILYGKDD--ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISR 533 (1077)
Q Consensus 457 r~~i~~v~Q~~~lf~~-ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lAR 533 (1077)
+++++|++|++.+|+. |++||+.++... ...++..+ + ..+.++.+ |++........+||||||||++|||
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~--~---~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~ 153 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRE--R---AEELLERV--GLGDRLNHYPSELSGGQQQRVAIAR 153 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHH--H---HHHHHHHc--CCchhhhcChhhcCHHHHHHHHHHH
Confidence 5689999999999986 999999876421 11111111 1 11222222 3444456677899999999999999
Q ss_pred HhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEccCchhHhhcCEEEEEECCEE
Q 001438 534 AIVKNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRNADVIAVVQGRKI 596 (1077)
Q Consensus 534 al~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~vtH~~~~~~~~d~i~~l~~G~i 596 (1077)
|++.+|+++||||||++||+.+++.+.+.|+++.+ ++|+|++||+++.+..||++++|++|++
T Consensus 154 al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G~i 218 (218)
T cd03255 154 ALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218 (218)
T ss_pred HHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhcEEEEeeCCcC
Confidence 99999999999999999999999999999998754 8999999999998888999999999974
No 168
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.6e-41 Score=364.34 Aligned_cols=224 Identities=29% Similarity=0.530 Sum_probs=185.5
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCC-----ccEEEECCeeCCCC--CH
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPL-----SGEILLDGNNIKGL--DL 453 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~-----~G~i~~~g~~~~~~--~~ 453 (1077)
.++++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|.++... +.
T Consensus 4 ~l~~~~l~~~~~~---~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~ 80 (251)
T PRK14249 4 KIKIRGVNFFYHK---HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDV 80 (251)
T ss_pred eEEEEEEEEEECC---eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccCh
Confidence 5899999999964 35899999999999999999999999999999999999997 69999999998643 34
Q ss_pred HHHhhheeEEccCCCcccccHHHHHhcCCCC--CC-HHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHH
Q 001438 454 KWLRQQIGLVNQEPALFATTIRENILYGKDD--AT-MEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIA 530 (1077)
Q Consensus 454 ~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~~--~~-~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~ 530 (1077)
..+|+.++|+||++.+|+.|++||+.++... .. .++..+.+. ...+.+ .+.++..+.....+.+||||||||++
T Consensus 81 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~--~~l~~~-~l~~~l~~~~~~~~~~LS~Gq~qrv~ 157 (251)
T PRK14249 81 VNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVE--KSLRQA-ALWDEVKDNLHKSGLALSGGQQQRLC 157 (251)
T ss_pred HHhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHH--HHHHHh-CCchhhhhHhhCCcccCCHHHHHHHH
Confidence 5678899999999999999999999876321 11 111111111 111111 23223344566788899999999999
Q ss_pred HHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHhcCC
Q 001438 531 ISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISNP 609 (1077)
Q Consensus 531 lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 609 (1077)
||||++.+|+++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+++++...+
T Consensus 158 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~ 237 (251)
T PRK14249 158 IARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEIFSRP 237 (251)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCHHHHHhCC
Confidence 999999999999999999999999999999999888678999999999999876 8999999999999999999987654
Q ss_pred C
Q 001438 610 N 610 (1077)
Q Consensus 610 ~ 610 (1077)
.
T Consensus 238 ~ 238 (251)
T PRK14249 238 R 238 (251)
T ss_pred C
Confidence 3
No 169
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.1e-41 Score=360.74 Aligned_cols=213 Identities=25% Similarity=0.424 Sum_probs=175.1
Q ss_pred EEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhee
Q 001438 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (1077)
Q Consensus 382 i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 461 (1077)
|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ...++++++
T Consensus 1 i~~~~~~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~ 76 (220)
T cd03265 1 IEVENLVKKYGD---FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVRE-PREVRRRIG 76 (220)
T ss_pred CEEEEEEEEECC---EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcC-hHHHhhcEE
Confidence 578999999964 3589999999999999999999999999999999999999999999999988653 356677899
Q ss_pred EEccCCCcccc-cHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccC
Q 001438 462 LVNQEPALFAT-TIRENILYGKD--DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKN 538 (1077)
Q Consensus 462 ~v~Q~~~lf~~-ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~ 538 (1077)
|++|++.+++. |++||+.++.. ....++..+. .... ++.+ |++........+||||||||++||||++.+
T Consensus 77 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~--~~~~---l~~~--~l~~~~~~~~~~LS~G~~qr~~la~al~~~ 149 (220)
T cd03265 77 IVFQDLSVDDELTGWENLYIHARLYGVPGAERRER--IDEL---LDFV--GLLEAADRLVKTYSGGMRRRLEIARSLVHR 149 (220)
T ss_pred EecCCccccccCcHHHHHHHHHHHcCCCHHHHHHH--HHHH---HHHc--CCHHHhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 99999998876 99999987421 1111111111 1111 2222 222333445668999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHHHh-C-CCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHH
Q 001438 539 PSILLLDEATSALDAESENSVQEALDRVM-V-GRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEEL 605 (1077)
Q Consensus 539 p~illlDEpts~lD~~~~~~i~~~l~~~~-~-~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 605 (1077)
|+++||||||++||+++.+.+.+.|+++. + ++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 150 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 150 PEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred CCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 99999999999999999999999998874 3 7899999999999865 999999999999999988764
No 170
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.8e-41 Score=367.69 Aligned_cols=228 Identities=26% Similarity=0.443 Sum_probs=186.2
Q ss_pred ccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccC-----CCccEEEECCeeCCC--CC
Q 001438 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYE-----PLSGEILLDGNNIKG--LD 452 (1077)
Q Consensus 380 ~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~-----~~~G~i~~~g~~~~~--~~ 452 (1077)
..++++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|+++.. .+
T Consensus 23 ~~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~ 99 (271)
T PRK14238 23 VVFDTQNLNLWYGE---DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYS 99 (271)
T ss_pred eEEEEeeeEEEECC---cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEccccccc
Confidence 36999999999974 358999999999999999999999999999999999987 699999999999853 34
Q ss_pred HHHHhhheeEEccCCCcccccHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHH
Q 001438 453 LKWLRQQIGLVNQEPALFATTIRENILYGKD--DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIA 530 (1077)
Q Consensus 453 ~~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~ 530 (1077)
...++++++|+||++.+|+.|++||+.++.. ....++..+. ......+.. .+.+++.......+.+||||||||++
T Consensus 100 ~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~-~~~~~l~~~-~~~~~l~~~~~~~~~~LSgGe~qrv~ 177 (271)
T PRK14238 100 VEELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDE-IVEKSLRGA-AIWDELKDRLHDNAYGLSGGQQQRLC 177 (271)
T ss_pred HHHHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHH-HHHHHHHHc-CCcchHHHHHhcCcccCCHHHHHHHH
Confidence 5567888999999999998999999987531 1111111110 111111111 11123444556778899999999999
Q ss_pred HHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHhcCC
Q 001438 531 ISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISNP 609 (1077)
Q Consensus 531 lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 609 (1077)
|||||+.+|+++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+++++..++
T Consensus 178 laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 257 (271)
T PRK14238 178 IARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTDKIFSNP 257 (271)
T ss_pred HHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeCCHHHHHcCC
Confidence 999999999999999999999999999999999988778999999999999865 9999999999999999999997664
Q ss_pred Cch
Q 001438 610 NSA 612 (1077)
Q Consensus 610 ~~~ 612 (1077)
...
T Consensus 258 ~~~ 260 (271)
T PRK14238 258 SDK 260 (271)
T ss_pred CCH
Confidence 433
No 171
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.8e-41 Score=369.43 Aligned_cols=220 Identities=29% Similarity=0.555 Sum_probs=184.6
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhe
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 460 (1077)
.++++|++++|++. ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...+|+++
T Consensus 7 ~l~~~nl~~~~~~~-~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i 85 (271)
T PRK13632 7 MIKVENVSFSYPNS-ENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKI 85 (271)
T ss_pred EEEEEeEEEEcCCC-CccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcce
Confidence 58999999999632 24689999999999999999999999999999999999999999999999999877777888899
Q ss_pred eEEccCCC--cccccHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhc
Q 001438 461 GLVNQEPA--LFATTIRENILYGKDD--ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIV 536 (1077)
Q Consensus 461 ~~v~Q~~~--lf~~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~ 536 (1077)
+|++|+|. ++..|++||+.++... .+.++..+ ...++ ++.+ |++........+||||||||++||||++
T Consensus 86 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~--~~~~~---l~~~--~l~~~~~~~~~~LS~G~~qrl~laral~ 158 (271)
T PRK13632 86 GIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKD--IIDDL---AKKV--GMEDYLDKEPQNLSGGQKQRVAIASVLA 158 (271)
T ss_pred EEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHH--HHHHH---HHHc--CCHHHhhCCcccCCHHHHHHHHHHHHHH
Confidence 99999984 4567999999875321 22222211 11112 2222 3444456677899999999999999999
Q ss_pred cCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-C-CCeEEEEccCchhHhhcCEEEEEECCEEEEecChhHHhcC
Q 001438 537 KNPSILLLDEATSALDAESENSVQEALDRVM-V-GRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISN 608 (1077)
Q Consensus 537 ~~p~illlDEpts~lD~~~~~~i~~~l~~~~-~-~~t~i~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 608 (1077)
.+|++|||||||++||+.+.+.+.+.|+++. + ++|+|++||+++.+..||++++|++|++++.|+.+++..+
T Consensus 159 ~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 232 (271)
T PRK13632 159 LNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILNN 232 (271)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEEecCHHHHhcC
Confidence 9999999999999999999999999999875 3 5899999999998888999999999999999999888654
No 172
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=2.1e-38 Score=394.72 Aligned_cols=388 Identities=15% Similarity=0.211 Sum_probs=323.6
Q ss_pred HHHHHhhcccchHHHHHHHHHHHHHhhHHhHHHHHHHHHHHhhccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 684 AIKLYSMVRPDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYYMDWDTTQREVKKITILFCCAAVITVIVHAIEHLSFG 763 (1077)
Q Consensus 684 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 763 (1077)
...++++.+++++.+...++++++......+.++.+..+++....... ......+.+.++++.++..++.+++.++..
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~s~~~~ll~l~~p~~~~~iid~v~~~~~--~~~l~~l~~~~~~~~~~~~~~~~l~~~~~~ 204 (694)
T TIGR01846 127 FSWFIPAIIRYRKQFREVLLISLALQLFALVTPLLFQVVIDKVLVHRG--LSTLSVLALAMLAVAIFEPALGGLRTYLFA 204 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555666666666666666666666677777777776543211 122233344555666667788899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCccccccccCCchhHHHHHhhcHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 001438 764 IMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQNFGLVTASFVIAFILNWRIT 843 (1077)
Q Consensus 764 ~~~~~~~~~Lr~~l~~~llr~p~~FFD~~~~~~G~IlnR~s~D~~~i~~~l~~~l~~~~~~~~~~~~~i~i~~~~~w~l~ 843 (1077)
..+.++..++|.++|+++++.|++||+. +++|++++|+ +|++.+++.+...+..++..++.+++.++++++++|+++
T Consensus 205 ~~~~~~~~~l~~~~~~~l~~l~~~~f~~--~~~g~~~~rl-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~ 281 (694)
T TIGR01846 205 HLTSRIDVELGARLYRHLLGLPLGYFES--RRVGDTVARV-RELEQIRNFLTGSALTVVLDLLFVVVFLAVMFFYSPTLT 281 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHcCC--CCHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999995 9999999999 699999999888887777777777777888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHcchHHHHHhcchHHHHHHHHHHhhhhhHHHHHHHHHH
Q 001438 844 LVVVATYPLIISGHISEKLFFQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRSFIRGQIA 923 (1077)
Q Consensus 844 l~~l~~~Pl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Etl~Gi~tIrAf~~e~~~~~~f~~~~~~~~~~~~~~~~~~ 923 (1077)
+++++++|+.++...+..+.+++...+..+...+.++.+.|+++|++|||+|+.|+++.++|.+..++..+...+.....
T Consensus 282 li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (694)
T TIGR01846 282 GVVIGSLVCYALLSVFVGPILRKRVEDKFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFRVTNLG 361 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988877777777777777777788888899999999999999999999999999999999988888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHcCCCCc
Q 001438 924 GIFYGISQFFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLALVPDLLKGNQMAASVFEVLDRKTQV 1003 (1077)
Q Consensus 924 ~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~ 1003 (1077)
+......+.+..+..++++|+|+.++..|.+++|.++++.++......|+..+......++.+..+.+|+.++++.+++.
T Consensus 362 ~~~~~~~~~i~~~~~~~il~~g~~lv~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~ 441 (694)
T TIGR01846 362 NIAGQAIELIQKLTFAILLWFGAHLVIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEP 441 (694)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCc
Confidence 88888888888888889999999999999999999999999999999999999999999999999999999999876654
Q ss_pred cCCCCcccccccccEEEeeeeeeCCCCCcccccccceeeeeCCCEEEEECCCCCCHHHHHHHHhhccCCCCCCC
Q 001438 1004 IGDIGEELTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKA 1077 (1077)
Q Consensus 1004 ~~~~~~~~~~~~G~I~f~nVsf~Y~~~~~~~VLk~vsl~I~~GekVaIVGrTGsGKSTLi~lL~Rfyd~~~G~i 1077 (1077)
+.......+..+|.|+|+||+|+|+++ +.++|+|+||+|+|||++||||+||||||||+++|.|+|+|++|+|
T Consensus 442 ~~~~~~~~~~~~~~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I 514 (694)
T TIGR01846 442 RSAGLAALPELRGAITFENIRFRYAPD-SPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQV 514 (694)
T ss_pred cCCCCCCCCCCCCeEEEEEEEEEcCCC-CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceE
Confidence 322111223346899999999999754 2458999999999999999999999999999999999999999986
No 173
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=1.7e-38 Score=397.23 Aligned_cols=388 Identities=14% Similarity=0.151 Sum_probs=324.3
Q ss_pred HHHHHhhcccchHHHHHHHHHHHHHhhHHhHHHHHHHHHHHhhccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 684 AIKLYSMVRPDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYYMDWDTTQREVKKITILFCCAAVITVIVHAIEHLSFG 763 (1077)
Q Consensus 684 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 763 (1077)
...++.+.+++++.+...++++++..+...+.++.+..+++....... ......+...++++.++..++.+++.++..
T Consensus 142 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (710)
T TIGR03796 142 LRALWRRLRGSRGALLYLLLAGLLLVLPGLVIPAFSQIFVDEILVQGR--QDWLRPLLLGMGLTALLQGVLTWLQLYYLR 219 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666677666666666666666666677777777765543211 111222334455556667788889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCccccccccCCchhHHHHHhhcHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 001438 764 IMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQNFGLVTASFVIAFILNWRIT 843 (1077)
Q Consensus 764 ~~~~~~~~~Lr~~l~~~llr~p~~FFD~~~~~~G~IlnR~s~D~~~i~~~l~~~l~~~~~~~~~~~~~i~i~~~~~w~l~ 843 (1077)
..+.++..++|.++|+++++.|++||++ .++|++++|++.| +.+++.+...+..++..++.+++.++++++++|+++
T Consensus 220 ~~~~~~~~~l~~~~~~~ll~l~~~~~~~--~~~g~~~~r~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~ 296 (710)
T TIGR03796 220 RLQIKLAVGMSARFLWHILRLPVRFFAQ--RHAGDIASRVQLN-DQVAEFLSGQLATTALDAVMLVFYALLMLLYDPVLT 296 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHcC--CcccHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999995 9999999999988 689999988888889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHcchHHHHHhcchHHHHHHHHHHhhhhhHHHHHHHHHH
Q 001438 844 LVVVATYPLIISGHISEKLFFQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRSFIRGQIA 923 (1077)
Q Consensus 844 l~~l~~~Pl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Etl~Gi~tIrAf~~e~~~~~~f~~~~~~~~~~~~~~~~~~ 923 (1077)
++.++..|+.++...+..+..++..++.++...+..+.+.|+++|+++||+++.|+.+.++|.+...+..+...+.....
T Consensus 297 li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (710)
T TIGR03796 297 LIGIAFAAINVLALQLVSRRRVDANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQQELGVLT 376 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988888877777777777777888888889999999999999999999999999998888888888777778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHcCCCCc
Q 001438 924 GIFYGISQFFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLALVPDLLKGNQMAASVFEVLDRKTQV 1003 (1077)
Q Consensus 924 ~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~ 1003 (1077)
++...+...+..+...+++|+|+.++..|.++++.++++..+......++..+......++.+..+.+|+.++++.+++.
T Consensus 377 ~~~~~~~~~i~~~~~~~il~~g~~~v~~g~lt~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~ 456 (710)
T TIGR03796 377 QILGVLPTLLTSLNSALILVVGGLRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVDP 456 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcc
Confidence 88888888888888889999999999999999999999999999899999999999999999999999999999876654
Q ss_pred cCCC------Cccc-ccccccEEEeeeeeeCCCCCcccccccceeeeeCCCEEEEECCCCCCHHHHHHHHhhccCCCCCC
Q 001438 1004 IGDI------GEEL-TNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076 (1077)
Q Consensus 1004 ~~~~------~~~~-~~~~G~I~f~nVsf~Y~~~~~~~VLk~vsl~I~~GekVaIVGrTGsGKSTLi~lL~Rfyd~~~G~ 1076 (1077)
+... .... ++.+|.|+|+||+|+||+. +.++|+|+||+|+|||+||||||||||||||+++|.|+|+|++|+
T Consensus 457 ~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~ 535 (710)
T TIGR03796 457 LLEEEEAPAAGSEPSPRLSGYVELRNITFGYSPL-EPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGE 535 (710)
T ss_pred ccccccccccccccCCCCCCeEEEEEEEEecCCC-CCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcE
Confidence 3221 0111 3346899999999999854 346899999999999999999999999999999999999999998
Q ss_pred C
Q 001438 1077 A 1077 (1077)
Q Consensus 1077 i 1077 (1077)
|
T Consensus 536 I 536 (710)
T TIGR03796 536 I 536 (710)
T ss_pred E
Confidence 6
No 174
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.4e-41 Score=364.98 Aligned_cols=226 Identities=32% Similarity=0.513 Sum_probs=184.8
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcc---cCC--CccEEEECCeeCCCC--CH
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERF---YEP--LSGEILLDGNNIKGL--DL 453 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~---~~~--~~G~i~~~g~~~~~~--~~ 453 (1077)
.++++|+++.|++ .++|+|+||++++||+++|+||||||||||+++|+|+ ++| ++|+|.++|+++... +.
T Consensus 3 ~l~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 79 (250)
T PRK14245 3 KIDARDVNFWYGD---FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQV 79 (250)
T ss_pred EEEEEEEEEEECC---EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccH
Confidence 5899999999964 3589999999999999999999999999999999997 454 589999999998754 34
Q ss_pred HHHhhheeEEccCCCcccccHHHHHhcCCCC--C-CHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHH
Q 001438 454 KWLRQQIGLVNQEPALFATTIRENILYGKDD--A-TMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIA 530 (1077)
Q Consensus 454 ~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~~--~-~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~ 530 (1077)
..+|++++|+||++.+|+.|++||+.++... . ..++..+.+ ....+.+ .+++...+..++.+.+||||||||++
T Consensus 80 ~~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~--~~~l~~~-~l~~~~~~~~~~~~~~LS~G~~qrv~ 156 (250)
T PRK14245 80 DELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRV--EETLKGA-ALWDEVKDKLKESAFALSGGQQQRLC 156 (250)
T ss_pred HHHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHH--HHHHHHc-CCCcchhhhhhCCcccCCHHHHHHHH
Confidence 5678889999999999988999999875321 1 111111111 1111211 23333334566778899999999999
Q ss_pred HHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHhcCC
Q 001438 531 ISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISNP 609 (1077)
Q Consensus 531 lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 609 (1077)
||||++.+|+++||||||++||+.+++.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+++++.+++
T Consensus 157 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~~~~~~~ 236 (250)
T PRK14245 157 IARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKIFTNP 236 (250)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHHHHhcCC
Confidence 999999999999999999999999999999999988778999999999999855 9999999999999999999998654
Q ss_pred Cch
Q 001438 610 NSA 612 (1077)
Q Consensus 610 ~~~ 612 (1077)
...
T Consensus 237 ~~~ 239 (250)
T PRK14245 237 EKE 239 (250)
T ss_pred CCh
Confidence 433
No 175
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=2.3e-40 Score=363.21 Aligned_cols=218 Identities=28% Similarity=0.462 Sum_probs=188.9
Q ss_pred CCcccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHH
Q 001438 377 KLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWL 456 (1077)
Q Consensus 377 ~~~~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~ 456 (1077)
...+.|+++|+++.. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 35 ~~~~~l~i~nls~~~-----~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g----------- 98 (282)
T cd03291 35 SDDNNLFFSNLCLVG-----APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG----------- 98 (282)
T ss_pred CCCCeEEEEEEEEec-----ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC-----------
Confidence 344679999999952 3589999999999999999999999999999999999999999999998
Q ss_pred hhheeEEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhc
Q 001438 457 RQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIV 536 (1077)
Q Consensus 457 r~~i~~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~ 536 (1077)
.|+|++|++.+|+.|++||+.++... ...+....++..++.+.+..+|.+.++.+++.+.+||||||||++||||++
T Consensus 99 --~i~yv~q~~~l~~~tv~enl~~~~~~-~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~ 175 (282)
T cd03291 99 --RISFSSQFSWIMPGTIKENIIFGVSY-DEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVY 175 (282)
T ss_pred --EEEEEeCcccccccCHHHHhhccccc-CHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHh
Confidence 39999999999999999999986432 223334445555556677788999888999999999999999999999999
Q ss_pred cCCCEEEEeCcCCCCCHHHHHHHHHHH-HHHhCCCeEEEEccCchhHhhcCEEEEEECCEEEEecChhHHhcCCCchHH
Q 001438 537 KNPSILLLDEATSALDAESENSVQEAL-DRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYA 614 (1077)
Q Consensus 537 ~~p~illlDEpts~lD~~~~~~i~~~l-~~~~~~~t~i~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~ 614 (1077)
.+|++|||||||++||+.+.+.+.+.+ +.+.+++|+|++||+++.+..||++++|++|++++.|+++++.+. ...|.
T Consensus 176 ~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~-~~~~~ 253 (282)
T cd03291 176 KDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQSL-RPDFS 253 (282)
T ss_pred cCCCEEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHHhCCEEEEEECCEEEEECCHHHHHhc-chHHH
Confidence 999999999999999999999988754 555668999999999999988999999999999999999998764 33444
No 176
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=100.00 E-value=3.1e-38 Score=382.34 Aligned_cols=378 Identities=18% Similarity=0.179 Sum_probs=308.7
Q ss_pred hHHHHHHHHHHHHHhhHHhHHHHHHHHHHHhhccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 695 WTYGVCGTICAIIAGAQMPLFALGVSQALVAYYMDWDTTQREVKKITILFCCAAVITVIVHAIEHLSFGIMGERLTLRVR 774 (1077)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~Lr 774 (1077)
|+.+..+++++++.+...+..++.++++++........ ......+.+.+++++++..++.+++.+.....+.+...++|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr 80 (529)
T TIGR02857 2 RRALALLGLLGALGALLIIAQAWLLARVIDGLISAGEP-LAELLPALGALALAVLLRALLGWLGERAAARAAAAVKSQLR 80 (529)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566666777777778888888888765321111 12233344556666777788889999999999999999999
Q ss_pred HHHHHHHHcCCccccccccCCchhHHHHHhhcHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 001438 775 EKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQNFGLVTASFVIAFILNWRITLVVVATYPLII 854 (1077)
Q Consensus 775 ~~l~~~llr~p~~FFD~~~~~~G~IlnR~s~D~~~i~~~l~~~l~~~~~~~~~~~~~i~i~~~~~w~l~l~~l~~~Pl~i 854 (1077)
.++|+++++.|.+||++ +++|++++|+++|++.+++.+...+..++..++.+++.++++++++|.+++++++.+|+..
T Consensus 81 ~~l~~~l~~~~~~~~~~--~~~g~~~~~l~~di~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~l~~~~l~~ 158 (529)
T TIGR02857 81 ERLLAAVAALGPGWLQG--RPSGELATLALEGVEALDGYFARYLPQLVLAVIIPLAILAAVFPADWISGLILLLTAPLIP 158 (529)
T ss_pred HHHHHHHHhCCchhhcc--CChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 99999999999999995 9999999999999999999999888899999888888999999999999999999988887
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHcchHHHHHhcchHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 001438 855 SGHISEKLFFQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRSFIRGQIAGIFYGISQFFI 934 (1077)
Q Consensus 855 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Etl~Gi~tIrAf~~e~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 934 (1077)
+......++.+...++.++...+....+.|+++|+++||+|+.|+++.++|.+..++..+...+.....+....+.+.+.
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (529)
T TIGR02857 159 IFMILIGWAAQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAFLSSAVLELFA 238 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77666777776667777778888888999999999999999999999999999888888777776666666666666655
Q ss_pred HHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHcCCCCccCCCCcccccc
Q 001438 935 FSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLALVPDLLKGNQMAASVFEVLDRKTQVIGDIGEELTNV 1014 (1077)
Q Consensus 935 ~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~ 1014 (1077)
.....+...+++..+..|.++++.++++..+......++..+......++++..+.+|+.++++.+++...... ..++.
T Consensus 239 ~~~~~~~~~~~~~~~~~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~~~~~-~~~~~ 317 (529)
T TIGR02857 239 TLSVALVAVYIGFRLLAGDLDLATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLAGKAP-VTAAP 317 (529)
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcC-CCCCC
Confidence 55555555566666668999999999888888888889999999999999999999999999985433221111 11123
Q ss_pred cccEEEeeeeeeCCCCCcccccccceeeeeCCCEEEEECCCCCCHHHHHHHHhhccCCCCCCC
Q 001438 1015 EGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKA 1077 (1077)
Q Consensus 1015 ~G~I~f~nVsf~Y~~~~~~~VLk~vsl~I~~GekVaIVGrTGsGKSTLi~lL~Rfyd~~~G~i 1077 (1077)
.|+|+|+||+|+||++. .++|+|+||+|+|||++|||||||||||||+++|.|+|+|++|+|
T Consensus 318 ~~~i~~~~v~f~y~~~~-~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I 379 (529)
T TIGR02857 318 APSLEFSGLSVAYPGRR-APALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSI 379 (529)
T ss_pred CCeEEEEEEEEECCCCC-cccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEE
Confidence 47899999999998642 468999999999999999999999999999999999999999986
No 177
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.7e-41 Score=364.88 Aligned_cols=228 Identities=32% Similarity=0.517 Sum_probs=184.2
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccC-----CCccEEEECCeeCCC--CCH
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYE-----PLSGEILLDGNNIKG--LDL 453 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~-----~~~G~i~~~g~~~~~--~~~ 453 (1077)
.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.. .+.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~ 80 (251)
T PRK14251 4 IISAKDVHLSYGN---YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDL 80 (251)
T ss_pred eEEEEeeEEEECC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchH
Confidence 4899999999964 358999999999999999999999999999999999997 479999999999864 334
Q ss_pred HHHhhheeEEccCCCcccccHHHHHhcCCCC--C-CHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHH
Q 001438 454 KWLRQQIGLVNQEPALFATTIRENILYGKDD--A-TMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIA 530 (1077)
Q Consensus 454 ~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~~--~-~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~ 530 (1077)
..+|+.++|++|++.+|+.|++||+.++... . ..+...+.+ ....+.+ .+...........+.+||||||||++
T Consensus 81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~--~~~l~~~-~l~~~~~~~~~~~~~~LS~Gq~qr~~ 157 (251)
T PRK14251 81 VELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRV--EESLKQA-AIWKETKDNLDRNAQAFSGGQQQRIC 157 (251)
T ss_pred HHhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHH--HHHHHHc-CCCcchHHHhccChhhCCHHHHHHHH
Confidence 5678889999999999999999999875321 1 111111111 1111111 12111122345677899999999999
Q ss_pred HHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHhcCC
Q 001438 531 ISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISNP 609 (1077)
Q Consensus 531 lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 609 (1077)
||||++++|+++||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|++++.|+++++...+
T Consensus 158 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~ 237 (251)
T PRK14251 158 IARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEMFIAP 237 (251)
T ss_pred HHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCHHHHHhCC
Confidence 999999999999999999999999999999999988778999999999999765 9999999999999999999987654
Q ss_pred CchHH
Q 001438 610 NSAYA 614 (1077)
Q Consensus 610 ~~~~~ 614 (1077)
...|.
T Consensus 238 ~~~~~ 242 (251)
T PRK14251 238 KKQIT 242 (251)
T ss_pred CCHHH
Confidence 44443
No 178
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.6e-41 Score=368.49 Aligned_cols=218 Identities=30% Similarity=0.537 Sum_probs=183.0
Q ss_pred EEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCC-HHHHhhhe
Q 001438 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLD-LKWLRQQI 460 (1077)
Q Consensus 382 i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~-~~~~r~~i 460 (1077)
++++|++++|++. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++...+ ...+++.+
T Consensus 2 l~~~~l~~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (274)
T PRK13644 2 IRLENVSYSYPDG--TPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLV 79 (274)
T ss_pred EEEEEEEEEcCCC--CceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhhe
Confidence 6899999999632 35899999999999999999999999999999999999999999999999997765 35678889
Q ss_pred eEEccCCC--cccccHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhc
Q 001438 461 GLVNQEPA--LFATTIRENILYGKDD--ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIV 536 (1077)
Q Consensus 461 ~~v~Q~~~--lf~~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~ 536 (1077)
+|++|+|. +++.|++|||.++... .+.++..+.+ ..+ ++.+ |++......+..||||||||++||||++
T Consensus 80 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~--~~~---l~~~--gl~~~~~~~~~~LS~G~~qrv~laral~ 152 (274)
T PRK13644 80 GIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRV--DRA---LAEI--GLEKYRHRSPKTLSGGQGQCVALAGILT 152 (274)
T ss_pred EEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHH--HHH---HHHC--CCHHHhcCCcccCCHHHHHHHHHHHHHH
Confidence 99999986 4567999999876421 1222222111 111 2222 3444456677899999999999999999
Q ss_pred cCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHhhcCEEEEEECCEEEEecChhHHhcC
Q 001438 537 KNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISN 608 (1077)
Q Consensus 537 ~~p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 608 (1077)
.+|+++||||||++||+.++..+.+.|+++. +|+|+|++||+++.+..||+|++|++|++++.|+++++...
T Consensus 153 ~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 225 (274)
T PRK13644 153 MEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLSD 225 (274)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEEEECCHHHHhcC
Confidence 9999999999999999999999999998875 58999999999999988999999999999999999998654
No 179
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-40 Score=366.50 Aligned_cols=225 Identities=28% Similarity=0.460 Sum_probs=185.9
Q ss_pred cccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccC-----CCccEEEECCeeCCC--C
Q 001438 379 SGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYE-----PLSGEILLDGNNIKG--L 451 (1077)
Q Consensus 379 ~~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~-----~~~G~i~~~g~~~~~--~ 451 (1077)
...|+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.. .
T Consensus 18 ~~~l~~~nl~~~~~~---~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~ 94 (267)
T PRK14237 18 EIALSTKDLHVYYGK---KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEI 94 (267)
T ss_pred CeEEEEeeEEEEECC---eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccC
Confidence 346999999999963 469999999999999999999999999999999999997 589999999999864 3
Q ss_pred CHHHHhhheeEEccCCCcccccHHHHHhcCCCC--C-CHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHH
Q 001438 452 DLKWLRQQIGLVNQEPALFATTIRENILYGKDD--A-TMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQR 528 (1077)
Q Consensus 452 ~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~~--~-~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqr 528 (1077)
+...+|+.++|+||++.+|+.|++||+.++... . ..++..+ +..+..+.+ .+.++.++..+..+.+||||||||
T Consensus 95 ~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~--~~~~~l~~~-~l~~~i~~~~~~~~~~LS~G~~qr 171 (267)
T PRK14237 95 NVYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDE--IVETSLKQA-ALWDQVKDDLHKSALTLSGGQQQR 171 (267)
T ss_pred ChHHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHH--HHHHHHHHc-CCCchhhhhhcCCcccCCHHHHHH
Confidence 355678889999999999989999999876321 1 1111111 111111111 222233345677888999999999
Q ss_pred HHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHh-hcCEEEEEECCEEEEecChhHHhc
Q 001438 529 IAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIR-NADVIAVVQGRKIVKTGSHEELIS 607 (1077)
Q Consensus 529 i~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~ 607 (1077)
++||||++++|+++||||||++||+.+.+.+.+.|+++.++.|+|++||+++.+. .||++++|++|++++.|+++++..
T Consensus 172 l~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 251 (267)
T PRK14237 172 LCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTRNIFT 251 (267)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999999999999999999999999998877899999999999885 599999999999999999999876
Q ss_pred CC
Q 001438 608 NP 609 (1077)
Q Consensus 608 ~~ 609 (1077)
.+
T Consensus 252 ~~ 253 (267)
T PRK14237 252 NP 253 (267)
T ss_pred CC
Confidence 53
No 180
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=100.00 E-value=6.8e-41 Score=367.88 Aligned_cols=229 Identities=28% Similarity=0.420 Sum_probs=183.6
Q ss_pred cEEEEeEEEEcCCC------CCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHH
Q 001438 381 HIEFKDVSFCYPSR------PDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLK 454 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~------~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~ 454 (1077)
.|+++|++++|++. .++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+..
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~ 81 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRK 81 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHH
Confidence 37899999999632 134689999999999999999999999999999999999999999999999999877654
Q ss_pred H---HhhheeEEccCCC--ccc-ccHHHHHhcCCC---CCCHHHHHHHHHHHhHHHHHhcCccchh-hhhcCCCCCCChH
Q 001438 455 W---LRQQIGLVNQEPA--LFA-TTIRENILYGKD---DATMEEITRAAKLSEAMSFISNLPERFE-TQVGERGIQLSGG 524 (1077)
Q Consensus 455 ~---~r~~i~~v~Q~~~--lf~-~ti~~ni~~~~~---~~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~~~~~g~~LSgG 524 (1077)
. +|+.++|++|+|. +++ .|++||+.++.. ....++..+ + ..+.++.+ |++ ......+.+||||
T Consensus 82 ~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~--~---~~~~l~~~--gl~~~~~~~~~~~LSgG 154 (265)
T TIGR02769 82 QRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKA--R---IAELLDMV--GLRSEDADKLPRQLSGG 154 (265)
T ss_pred HHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHH--H---HHHHHHHc--CCChhhhhCChhhCCHH
Confidence 3 5778999999983 443 599999975421 111111111 1 11222222 332 2345677899999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEccCchhHhh-cCEEEEEECCEEEEecC
Q 001438 525 QKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGS 601 (1077)
Q Consensus 525 qkqri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~ 601 (1077)
||||++||||++.+|++|||||||++||+.+++.+.+.|+++.+ ++|+|++||+++.+.. ||++++|++|++++.|+
T Consensus 155 e~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~ 234 (265)
T TIGR02769 155 QLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEECD 234 (265)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEEECC
Confidence 99999999999999999999999999999999999999998753 8999999999999875 99999999999999999
Q ss_pred hhHHhcCCCchHHHH
Q 001438 602 HEELISNPNSAYAAL 616 (1077)
Q Consensus 602 ~~~l~~~~~~~~~~~ 616 (1077)
++++....+..+..+
T Consensus 235 ~~~~~~~~~~~~~~~ 249 (265)
T TIGR02769 235 VAQLLSFKHPAGRNL 249 (265)
T ss_pred HHHHcCCCCHHHHHH
Confidence 999987533334333
No 181
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.7e-41 Score=376.09 Aligned_cols=233 Identities=23% Similarity=0.397 Sum_probs=184.9
Q ss_pred cEEEEeEEEEcCCCCC-cccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccC----CCccEEEECCeeCCCCCHHH
Q 001438 381 HIEFKDVSFCYPSRPD-VAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYE----PLSGEILLDGNNIKGLDLKW 455 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~-~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~----~~~G~i~~~g~~~~~~~~~~ 455 (1077)
.++++|+++.|+.... ..+|+||||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|+++.+++.++
T Consensus 3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~ 82 (326)
T PRK11022 3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKE 82 (326)
T ss_pred eEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHH
Confidence 3799999999975322 358999999999999999999999999999999999997 48999999999999888766
Q ss_pred Hhh----heeEEccCCC--cccc-cHHHHHhcCC---CCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHH
Q 001438 456 LRQ----QIGLVNQEPA--LFAT-TIRENILYGK---DDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQ 525 (1077)
Q Consensus 456 ~r~----~i~~v~Q~~~--lf~~-ti~~ni~~~~---~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq 525 (1077)
+++ .|+||||+|. +.+. |+.+++.... .....++..+ +..++.+.+ .+++ .....+..+.+|||||
T Consensus 83 ~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~--~~~~~L~~~-gL~~-~~~~l~~~p~~LSgGq 158 (326)
T PRK11022 83 RRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQ--RAIDLLNQV-GIPD-PASRLDVYPHQLSGGM 158 (326)
T ss_pred HHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHH--HHHHHHHHC-CCCC-hHHHHhCCchhCCHHH
Confidence 543 6999999995 4433 6666654221 0112121111 111222222 2321 1234567788999999
Q ss_pred HHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEccCchhHh-hcCEEEEEECCEEEEecCh
Q 001438 526 KQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIR-NADVIAVVQGRKIVKTGSH 602 (1077)
Q Consensus 526 kqri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~ 602 (1077)
|||++|||||+.+|++||+||||++||+.++..+.+.|+++. .|.|+|+|||+++.+. .||+|++|++|+|+|.|++
T Consensus 159 ~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive~g~~ 238 (326)
T PRK11022 159 SQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGKA 238 (326)
T ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 999999999999999999999999999999999999999875 3899999999999985 5999999999999999999
Q ss_pred hHHhcCCCchHHHHH
Q 001438 603 EELISNPNSAYAALV 617 (1077)
Q Consensus 603 ~~l~~~~~~~~~~~~ 617 (1077)
+++.+++...|.+..
T Consensus 239 ~~~~~~p~hpyt~~l 253 (326)
T PRK11022 239 HDIFRAPRHPYTQAL 253 (326)
T ss_pred HHHhhCCCChHHHHH
Confidence 999988777776543
No 182
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.6e-41 Score=375.86 Aligned_cols=231 Identities=29% Similarity=0.443 Sum_probs=186.8
Q ss_pred cEEEEeEEEEcCCCC-------CcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCH
Q 001438 381 HIEFKDVSFCYPSRP-------DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDL 453 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~-------~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~ 453 (1077)
.|+++|+++.|+... ...+++||||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|+++..++.
T Consensus 5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~ 84 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADP 84 (327)
T ss_pred eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCH
Confidence 489999999996321 2468999999999999999999999999999999999999999999999999988765
Q ss_pred H---HHhhheeEEccCCC--cccc-cHHHHHhcCC---CCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChH
Q 001438 454 K---WLRQQIGLVNQEPA--LFAT-TIRENILYGK---DDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGG 524 (1077)
Q Consensus 454 ~---~~r~~i~~v~Q~~~--lf~~-ti~~ni~~~~---~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgG 524 (1077)
. .+|++|+||+|+|. +++. |+.+|+..+. .....++..+ +..++.+.+ .+++ ......+.+||||
T Consensus 85 ~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~--~~~~~l~~~-gL~~---~~~~~~p~~LSgG 158 (327)
T PRK11308 85 EAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERRE--KALAMMAKV-GLRP---EHYDRYPHMFSGG 158 (327)
T ss_pred HHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHH--HHHHHHHHC-CCCh---HHhcCCCccCCHH
Confidence 3 46778999999993 5554 9999986421 1112222111 111222222 2221 1234567789999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEccCchhHhh-cCEEEEEECCEEEEecC
Q 001438 525 QKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGS 601 (1077)
Q Consensus 525 qkqri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~ 601 (1077)
||||++|||||+.+|++||+||||++||..+++.+.+.|+++. .|.|+|+|||+++.+.. ||+|++|++|+|+|.|+
T Consensus 159 q~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~ive~g~ 238 (327)
T PRK11308 159 QRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEKGT 238 (327)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECC
Confidence 9999999999999999999999999999999999999998874 38999999999999975 99999999999999999
Q ss_pred hhHHhcCCCchHHHHH
Q 001438 602 HEELISNPNSAYAALV 617 (1077)
Q Consensus 602 ~~~l~~~~~~~~~~~~ 617 (1077)
.+++.+++...|.+..
T Consensus 239 ~~~~~~~p~hpyt~~l 254 (327)
T PRK11308 239 KEQIFNNPRHPYTQAL 254 (327)
T ss_pred HHHHhcCCCCHHHHHH
Confidence 9999987777776543
No 183
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=100.00 E-value=4.8e-41 Score=359.93 Aligned_cols=209 Identities=29% Similarity=0.494 Sum_probs=172.4
Q ss_pred EEEEeEEEEcCCCC-CcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHH---Hh
Q 001438 382 IEFKDVSFCYPSRP-DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKW---LR 457 (1077)
Q Consensus 382 i~~~~v~~~y~~~~-~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~---~r 457 (1077)
++++|++++|++.. ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+... +|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence 68999999996421 246899999999999999999999999999999999999999999999999998776543 34
Q ss_pred -hheeEEccCCCcccc-cHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHH
Q 001438 458 -QQIGLVNQEPALFAT-TIRENILYGKD--DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISR 533 (1077)
Q Consensus 458 -~~i~~v~Q~~~lf~~-ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lAR 533 (1077)
++++|++|++.+|+. |++||+.++.. ....++..+. . .+.++.+ |++........+||||||||++|||
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~--~---~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~lar 154 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKER--A---YEMLEKV--GLEHRINHRPSELSGGERQRVAIAR 154 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHH--H---HHHHHHc--CChhhhhCChhhCCHHHHHHHHHHH
Confidence 679999999999864 99999987421 1111211111 1 1222222 4444456667899999999999999
Q ss_pred HhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEccCchhHhhcCEEEEEECCEEE
Q 001438 534 AIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRNADVIAVVQGRKIV 597 (1077)
Q Consensus 534 al~~~p~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~~~~d~i~~l~~G~i~ 597 (1077)
|++.+|++|||||||++||+.+++.+.+.|+++. .++|+|++||+++.+..||+|++|++|+++
T Consensus 155 al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 155 ALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLF 220 (221)
T ss_pred HHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCCEec
Confidence 9999999999999999999999999999998874 378999999999999889999999999985
No 184
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.9e-41 Score=361.52 Aligned_cols=218 Identities=24% Similarity=0.405 Sum_probs=181.2
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHH-Hhhh
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKW-LRQQ 459 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~-~r~~ 459 (1077)
.++++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+... .++.
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 81 (237)
T PRK11614 5 MLSFDKVSAHYGK---IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREA 81 (237)
T ss_pred EEEEEeEEEeeCC---ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhC
Confidence 4899999999964 35899999999999999999999999999999999999999999999999998877554 5778
Q ss_pred eeEEccCCCcccc-cHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccC
Q 001438 460 IGLVNQEPALFAT-TIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKN 538 (1077)
Q Consensus 460 i~~v~Q~~~lf~~-ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~ 538 (1077)
++|++|++.+|++ |++||+.++......++..+. .....+.+.. ++........+||||||||++||||++.+
T Consensus 82 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~--~~~~l~~~~~----l~~~~~~~~~~LS~G~~qrl~la~al~~~ 155 (237)
T PRK11614 82 VAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQER--IKWVYELFPR----LHERRIQRAGTMSGGEQQMLAIGRALMSQ 155 (237)
T ss_pred EEEeccCcccCCCCcHHHHHHHhhhccChhHHHHH--HHHHHHHHHH----HHHHHhCchhhCCHHHHHHHHHHHHHHhC
Confidence 9999999999985 999999876422222221111 1112222211 12223446678999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHh-hcCEEEEEECCEEEEecChhHHhc
Q 001438 539 PSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIR-NADVIAVVQGRKIVKTGSHEELIS 607 (1077)
Q Consensus 539 p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~ 607 (1077)
|+|+||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+. .||++++|++|++++.|+++++..
T Consensus 156 p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (237)
T PRK11614 156 PRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLA 226 (237)
T ss_pred CCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHhc
Confidence 99999999999999999999999998874 5899999999999775 599999999999999999999864
No 185
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-40 Score=367.20 Aligned_cols=225 Identities=32% Similarity=0.528 Sum_probs=185.6
Q ss_pred cccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCC-----CccEEEECCeeCCC--C
Q 001438 379 SGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEP-----LSGEILLDGNNIKG--L 451 (1077)
Q Consensus 379 ~~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~-----~~G~i~~~g~~~~~--~ 451 (1077)
.+.++++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++.. .
T Consensus 23 ~~~l~~~nl~~~~~~---~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~ 99 (272)
T PRK14236 23 QTALEVRNLNLFYGD---KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKV 99 (272)
T ss_pred CcEEEEEEEEEEECC---eeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECccccc
Confidence 356999999999964 3589999999999999999999999999999999999884 89999999999864 3
Q ss_pred CHHHHhhheeEEccCCCcccccHHHHHhcCCC--CC-CHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHH
Q 001438 452 DLKWLRQQIGLVNQEPALFATTIRENILYGKD--DA-TMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQR 528 (1077)
Q Consensus 452 ~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~--~~-~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqr 528 (1077)
+...+|+.++|++|++.+|+.|++||+.++.. .. ..++..+ +.....+.+ .+++...+..+..+.+||||||||
T Consensus 100 ~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~--~~~~~l~~~-~l~~~~~~~~~~~~~~LS~Gq~qr 176 (272)
T PRK14236 100 DVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDE--AVERSLRGA-ALWDEVKDRLHENAFGLSGGQQQR 176 (272)
T ss_pred CHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHH--HHHHHHHHc-CCChhHHHHhhCCcccCCHHHHHH
Confidence 45567889999999999998999999987532 11 1111111 111111111 233233345677788999999999
Q ss_pred HHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHhc
Q 001438 529 IAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELIS 607 (1077)
Q Consensus 529 i~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 607 (1077)
++||||++++|+++||||||++||+.+++.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 177 v~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 256 (272)
T PRK14236 177 LVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDTDTLFT 256 (272)
T ss_pred HHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEECCEEEecCCHHHHhc
Confidence 99999999999999999999999999999999999988778999999999999764 99999999999999999999876
Q ss_pred CC
Q 001438 608 NP 609 (1077)
Q Consensus 608 ~~ 609 (1077)
.+
T Consensus 257 ~~ 258 (272)
T PRK14236 257 SP 258 (272)
T ss_pred CC
Confidence 53
No 186
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.4e-41 Score=364.87 Aligned_cols=229 Identities=26% Similarity=0.493 Sum_probs=187.3
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCC-----CccEEEECCeeCCCC--CH
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEP-----LSGEILLDGNNIKGL--DL 453 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~-----~~G~i~~~g~~~~~~--~~ 453 (1077)
.|+++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+.+| ++|+|.++|+++... +.
T Consensus 6 ~i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 82 (253)
T PRK14261 6 ILSTKNLNLWYGE---KHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADV 82 (253)
T ss_pred eEEEeeeEEEECC---eeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccch
Confidence 5899999999963 3589999999999999999999999999999999999763 489999999998765 44
Q ss_pred HHHhhheeEEccCCCcccccHHHHHhcCCCCC---CHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHH
Q 001438 454 KWLRQQIGLVNQEPALFATTIRENILYGKDDA---TMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIA 530 (1077)
Q Consensus 454 ~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~~~---~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~ 530 (1077)
...|+.++|++|++.+|+.|++||+.++.... ...+..+. .....+.+ .+.+++.+..++.+.+||||||||++
T Consensus 83 ~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~--~~~~l~~~-~l~~~l~~~~~~~~~~LS~G~~qrv~ 159 (253)
T PRK14261 83 VALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTI--VEKSLKGA-ALWDEVKDRLHDSALSLSGGQQQRLC 159 (253)
T ss_pred hhhhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHH--HHHHHHHh-cCchhhHHHhhcChhhCCHHHHHHHH
Confidence 56778899999999999899999998864211 11111111 11111111 23333445567788899999999999
Q ss_pred HHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHhcCC
Q 001438 531 ISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISNP 609 (1077)
Q Consensus 531 lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 609 (1077)
||||++.+|+++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+++++..++
T Consensus 160 laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~ 239 (253)
T PRK14261 160 IARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQIFENP 239 (253)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHHHhhCCEEEEEECCEEEEcCCHHHHHhCC
Confidence 999999999999999999999999999999999988777999999999999865 9999999999999999999987654
Q ss_pred CchHHH
Q 001438 610 NSAYAA 615 (1077)
Q Consensus 610 ~~~~~~ 615 (1077)
...+.+
T Consensus 240 ~~~~~~ 245 (253)
T PRK14261 240 HEELTE 245 (253)
T ss_pred CcHHHH
Confidence 434443
No 187
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=5.9e-41 Score=361.37 Aligned_cols=214 Identities=29% Similarity=0.492 Sum_probs=178.7
Q ss_pred EEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHH-Hhhhe
Q 001438 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKW-LRQQI 460 (1077)
Q Consensus 382 i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~-~r~~i 460 (1077)
|+++|+++.|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .++++
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (230)
T TIGR03410 1 LEVSNLNVYYGQ---SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGI 77 (230)
T ss_pred CEEEeEEEEeCC---eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCe
Confidence 478999999974 35899999999999999999999999999999999999999999999999998776654 46689
Q ss_pred eEEccCCCcccc-cHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccCC
Q 001438 461 GLVNQEPALFAT-TIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNP 539 (1077)
Q Consensus 461 ~~v~Q~~~lf~~-ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~p 539 (1077)
+|+||++.+|+. |++||+.++.......+...+. ...+.+ +++.........+||||||||++||||++++|
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~---~~l~~~----~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p 150 (230)
T TIGR03410 78 AYVPQGREIFPRLTVEENLLTGLAALPRRSRKIPD---EIYELF----PVLKEMLGRRGGDLSGGQQQQLAIARALVTRP 150 (230)
T ss_pred EEeccCCcccCCCcHHHHHHHHHHhcCcchHHHHH---HHHHHH----HhHHHHhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 999999999986 9999998764221111100111 111111 11233345667789999999999999999999
Q ss_pred CEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHH
Q 001438 540 SILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEEL 605 (1077)
Q Consensus 540 ~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 605 (1077)
+++||||||++||+.+.+.+.+.|.++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 151 ~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 151 KLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL 219 (230)
T ss_pred CEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHc
Confidence 99999999999999999999999988753 7999999999999875 999999999999999999887
No 188
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=100.00 E-value=1.4e-40 Score=363.10 Aligned_cols=223 Identities=32% Similarity=0.505 Sum_probs=183.3
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCC--------
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLD-------- 452 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~-------- 452 (1077)
.++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (250)
T PRK11264 3 AIEVKNLVKKFHG---QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGL 79 (250)
T ss_pred cEEEeceEEEECC---eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhH
Confidence 3899999999974 35899999999999999999999999999999999999999999999999986542
Q ss_pred HHHHhhheeEEccCCCccc-ccHHHHHhcCC---CCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHH
Q 001438 453 LKWLRQQIGLVNQEPALFA-TTIRENILYGK---DDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQR 528 (1077)
Q Consensus 453 ~~~~r~~i~~v~Q~~~lf~-~ti~~ni~~~~---~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqr 528 (1077)
...+|++++|+||++.+|+ .|++||+.++. .....++..+.+ .+.++.+ |++......+.+||||||||
T Consensus 80 ~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~-----~~~l~~~--gl~~~~~~~~~~LS~Gq~qr 152 (250)
T PRK11264 80 IRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARA-----RELLAKV--GLAGKETSYPRRLSGGQQQR 152 (250)
T ss_pred HHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHH-----HHHHHHc--CCcchhhCChhhCChHHHHH
Confidence 2456788999999999886 59999998642 111222211111 1222222 33334456778999999999
Q ss_pred HHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHh
Q 001438 529 IAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELI 606 (1077)
Q Consensus 529 i~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~ 606 (1077)
++||||++.+|++|||||||++||+.+++.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 153 v~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 232 (250)
T PRK11264 153 VAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALF 232 (250)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999998875 48999999999999865 9999999999999999999987
Q ss_pred cCCCchH
Q 001438 607 SNPNSAY 613 (1077)
Q Consensus 607 ~~~~~~~ 613 (1077)
+.+...|
T Consensus 233 ~~~~~~~ 239 (250)
T PRK11264 233 ADPQQPR 239 (250)
T ss_pred cCCCCHH
Confidence 6543333
No 189
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-40 Score=363.96 Aligned_cols=228 Identities=26% Similarity=0.492 Sum_probs=184.7
Q ss_pred ccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccC--C---CccEEEECCeeCCCC--C
Q 001438 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYE--P---LSGEILLDGNNIKGL--D 452 (1077)
Q Consensus 380 ~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~--~---~~G~i~~~g~~~~~~--~ 452 (1077)
+.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++ | ++|+|.++|+++... +
T Consensus 3 ~~l~~~nl~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~ 79 (252)
T PRK14256 3 NKVKLEQLNVHFGK---NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVD 79 (252)
T ss_pred cEEEEEEEEEEeCC---eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCC
Confidence 56999999999973 358999999999999999999999999999999999986 4 689999999998643 3
Q ss_pred HHHHhhheeEEccCCCcccc-cHHHHHhcCCCC---CCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHH
Q 001438 453 LKWLRQQIGLVNQEPALFAT-TIRENILYGKDD---ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQR 528 (1077)
Q Consensus 453 ~~~~r~~i~~v~Q~~~lf~~-ti~~ni~~~~~~---~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqr 528 (1077)
...+|+.++|+||++.+|+. |++||+.++... .+.++..+. .....+.+ .+........+..+.+||||||||
T Consensus 80 ~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~--~~~~l~~~-~l~~~~~~~~~~~~~~LS~G~~qr 156 (252)
T PRK14256 80 PVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEI--VESSLKRV-ALWDEVKDRLKSNAMELSGGQQQR 156 (252)
T ss_pred hHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHH--HHHHHHHc-CCchhhhHHhhCCcCcCCHHHHHH
Confidence 45678889999999999984 999999875311 112211111 11111111 121122233456678999999999
Q ss_pred HHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHh-hcCEEEEEECCEEEEecChhHHhc
Q 001438 529 IAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIR-NADVIAVVQGRKIVKTGSHEELIS 607 (1077)
Q Consensus 529 i~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~ 607 (1077)
++||||++.+|+++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+. .||++++|++|++++.|+++++..
T Consensus 157 l~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 236 (252)
T PRK14256 157 LCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGETKKIFT 236 (252)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHHHHh
Confidence 9999999999999999999999999999999999999877899999999999985 499999999999999999999987
Q ss_pred CCCchH
Q 001438 608 NPNSAY 613 (1077)
Q Consensus 608 ~~~~~~ 613 (1077)
.+...|
T Consensus 237 ~~~~~~ 242 (252)
T PRK14256 237 TPEKKQ 242 (252)
T ss_pred CCCcHH
Confidence 654443
No 190
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.1e-41 Score=358.46 Aligned_cols=207 Identities=27% Similarity=0.485 Sum_probs=171.2
Q ss_pred EEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhee
Q 001438 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (1077)
Q Consensus 382 i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 461 (1077)
|+++|+++.|++ .++++|+||++++| +++|+||||||||||+++|+|+++|++|+|.++|.++.+.+ ..+|++++
T Consensus 1 i~~~~~~~~~~~---~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 75 (211)
T cd03264 1 LQLENLTKRYGK---KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQP-QKLRRRIG 75 (211)
T ss_pred CEEEEEEEEECC---EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccch-HHHHhheE
Confidence 578999999964 35899999999999 99999999999999999999999999999999999987766 67788999
Q ss_pred EEccCCCcccc-cHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccC
Q 001438 462 LVNQEPALFAT-TIRENILYGKD--DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKN 538 (1077)
Q Consensus 462 ~v~Q~~~lf~~-ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~ 538 (1077)
|++|++.+|.. |++||+.+... ....++..+. .....+.+ .++ ........+||||||||++||||++.+
T Consensus 76 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~--~~~~l~~~-~l~----~~~~~~~~~LS~G~~qrv~la~al~~~ 148 (211)
T cd03264 76 YLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKAR--VDEVLELV-NLG----DRAKKKIGSLSGGMRRRVGIAQALVGD 148 (211)
T ss_pred EecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHH--HHHHHHHC-CCH----HHHhCchhhCCHHHHHHHHHHHHHhcC
Confidence 99999999986 99999986421 1111111111 11111111 122 223345568999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhh-cCEEEEEECCEEEEec
Q 001438 539 PSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTG 600 (1077)
Q Consensus 539 p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g 600 (1077)
|+++||||||++||+.+.+.+.+.|++..+++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 149 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 149 PSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999999999999988777999999999999865 9999999999998765
No 191
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=5.3e-41 Score=377.72 Aligned_cols=217 Identities=28% Similarity=0.472 Sum_probs=181.4
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhe
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 460 (1077)
.|+++|++++|++ ..+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++...+ ...|+.|
T Consensus 41 ~i~i~nl~k~y~~---~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~-~~~~~~i 116 (340)
T PRK13536 41 AIDLAGVSKSYGD---KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARA-RLARARI 116 (340)
T ss_pred eEEEEEEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcch-HHHhccE
Confidence 5999999999963 35999999999999999999999999999999999999999999999999987654 4678889
Q ss_pred eEEccCCCccc-ccHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhcc
Q 001438 461 GLVNQEPALFA-TTIRENILYGKD--DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVK 537 (1077)
Q Consensus 461 ~~v~Q~~~lf~-~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~ 537 (1077)
||+||++.++. .|++||+.+... ....++..+.+ .++.+.+ .+++..++ ...+||||||||++|||||+.
T Consensus 117 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~--~~ll~~~-~L~~~~~~----~~~~LS~G~kqrv~lA~aL~~ 189 (340)
T PRK13536 117 GVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVI--PSLLEFA-RLESKADA----RVSDLSGGMKRRLTLARALIN 189 (340)
T ss_pred EEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHH--HHHHHHc-CCchhhCC----ChhhCCHHHHHHHHHHHHHhc
Confidence 99999999875 499999975321 11222222211 1222322 34444444 455899999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHhcC
Q 001438 538 NPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISN 608 (1077)
Q Consensus 538 ~p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 608 (1077)
+|+++||||||++||+.+++.+.+.|+++. +|+|+|++||+++.+.. ||+|++|++|+++..|+++++..+
T Consensus 190 ~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 262 (340)
T PRK13536 190 DPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALIDE 262 (340)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 999999999999999999999999998874 58999999999999865 999999999999999999998753
No 192
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.1e-41 Score=370.84 Aligned_cols=221 Identities=29% Similarity=0.525 Sum_probs=181.8
Q ss_pred cEEEEeEEEEcCCCC--CcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCC----CHH
Q 001438 381 HIEFKDVSFCYPSRP--DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGL----DLK 454 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~--~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~----~~~ 454 (1077)
.|+++|++++|++.. ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++... +..
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 378999999997321 13589999999999999999999999999999999999999999999999998653 245
Q ss_pred HHhhheeEEccCC--CcccccHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHhcCccchh-hhhcCCCCCCChHHHHHH
Q 001438 455 WLRQQIGLVNQEP--ALFATTIRENILYGKD--DATMEEITRAAKLSEAMSFISNLPERFE-TQVGERGIQLSGGQKQRI 529 (1077)
Q Consensus 455 ~~r~~i~~v~Q~~--~lf~~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~~~~~g~~LSgGqkqri 529 (1077)
..++.++|++|+| .+|+.|++||+.++.. ....++..+. ...+ ++.+ |++ ........+||||||||+
T Consensus 82 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~--~~~~---l~~~--gL~~~~~~~~~~~LSgGq~qrl 154 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEK--ALKW---LKKV--GLSEDLISKSPFELSGGQMRRV 154 (287)
T ss_pred HHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHH--HHHH---HHHc--CCChhHhhCCcccCCHHHHHHH
Confidence 6677899999998 5777899999987532 1222222111 1122 2222 343 234566789999999999
Q ss_pred HHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHhc
Q 001438 530 AISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELIS 607 (1077)
Q Consensus 530 ~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 607 (1077)
+||||++.+|++|||||||++||+.+.+.+.+.|+++. +|.|+|++||+++.+.. ||++++|++|++++.|+++++..
T Consensus 155 ~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 234 (287)
T PRK13641 155 AIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEIFS 234 (287)
T ss_pred HHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999999998874 58999999999999864 99999999999999999998865
Q ss_pred C
Q 001438 608 N 608 (1077)
Q Consensus 608 ~ 608 (1077)
.
T Consensus 235 ~ 235 (287)
T PRK13641 235 D 235 (287)
T ss_pred C
Confidence 3
No 193
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=5.6e-41 Score=375.06 Aligned_cols=217 Identities=27% Similarity=0.460 Sum_probs=180.4
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhe
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 460 (1077)
.|+++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ....|+++
T Consensus 4 ~i~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i 79 (303)
T TIGR01288 4 AIDLVGVSKSYGD---KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSR-ARLARVAI 79 (303)
T ss_pred EEEEEeEEEEeCC---eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccc-HHHHhhcE
Confidence 5899999999963 3589999999999999999999999999999999999999999999999998654 35568889
Q ss_pred eEEccCCCccc-ccHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhcc
Q 001438 461 GLVNQEPALFA-TTIRENILYGKD--DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVK 537 (1077)
Q Consensus 461 ~~v~Q~~~lf~-~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~ 537 (1077)
||+||++.+++ .|++||+.+... ..+.++..+.+ .++.+.+ .+++. ......+||||||||++||||++.
T Consensus 80 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~--~~ll~~~-~l~~~----~~~~~~~LSgG~~qrv~la~al~~ 152 (303)
T TIGR01288 80 GVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVI--PSLLEFA-RLESK----ADVRVALLSGGMKRRLTLARALIN 152 (303)
T ss_pred EEEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHH--HHHHHHC-CChhH----hcCchhhCCHHHHHHHHHHHHHhc
Confidence 99999999886 499999975221 12222222211 1222322 23333 344556899999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHhcC
Q 001438 538 NPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISN 608 (1077)
Q Consensus 538 ~p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 608 (1077)
+|+++||||||++||+.+.+.+.+.|+++. +|+|+|++||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 153 ~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 225 (303)
T TIGR01288 153 DPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALIDE 225 (303)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 999999999999999999999999998874 58999999999999865 999999999999999999998653
No 194
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=100.00 E-value=4.9e-41 Score=346.42 Aligned_cols=178 Identities=37% Similarity=0.643 Sum_probs=164.7
Q ss_pred EEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhee
Q 001438 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (1077)
Q Consensus 382 i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 461 (1077)
|+++|++++|++. +.++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++... ...+|+.++
T Consensus 1 i~~~~~~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~ 78 (178)
T cd03247 1 LSINNVSFSYPEQ-EQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL-EKALSSLIS 78 (178)
T ss_pred CEEEEEEEEeCCC-CccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH-HHHHHhhEE
Confidence 4789999999753 23589999999999999999999999999999999999999999999999988765 566788899
Q ss_pred EEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccCCCE
Q 001438 462 LVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSI 541 (1077)
Q Consensus 462 ~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~p~i 541 (1077)
|++|+|.+|+.|++||+ +.+||||||||++||||++.+|++
T Consensus 79 ~~~q~~~~~~~tv~~~i---------------------------------------~~~LS~G~~qrv~laral~~~p~~ 119 (178)
T cd03247 79 VLNQRPYLFDTTLRNNL---------------------------------------GRRFSGGERQRLALARILLQDAPI 119 (178)
T ss_pred EEccCCeeecccHHHhh---------------------------------------cccCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999997 357999999999999999999999
Q ss_pred EEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhhcCEEEEEECCEEEEec
Q 001438 542 LLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTG 600 (1077)
Q Consensus 542 lllDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~~d~i~~l~~G~i~~~g 600 (1077)
+||||||++||+.+.+.+.+.|+++.+++|+|++||+++.++.||++++|++|++++.|
T Consensus 120 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 120 VLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178 (178)
T ss_pred EEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999999887789999999999999889999999999998764
No 195
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8e-41 Score=371.85 Aligned_cols=223 Identities=30% Similarity=0.521 Sum_probs=182.8
Q ss_pred ccEEEEeEEEEcCCCC--CcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCC----C-C
Q 001438 380 GHIEFKDVSFCYPSRP--DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKG----L-D 452 (1077)
Q Consensus 380 ~~i~~~~v~~~y~~~~--~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~----~-~ 452 (1077)
+.|+++|++++|+++. ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. . +
T Consensus 5 ~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 84 (289)
T PRK13645 5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKE 84 (289)
T ss_pred ceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccccccccc
Confidence 5799999999997532 1358999999999999999999999999999999999999999999999999852 1 3
Q ss_pred HHHHhhheeEEccCC--CcccccHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHH
Q 001438 453 LKWLRQQIGLVNQEP--ALFATTIRENILYGKD--DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQR 528 (1077)
Q Consensus 453 ~~~~r~~i~~v~Q~~--~lf~~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqr 528 (1077)
...+|++|+|++|+| .+|+.|++||+.++.. ....++..+. ..++.+.+ .++.+ .......+||||||||
T Consensus 85 ~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~--~~~ll~~~-~L~~~---~~~~~~~~LS~Gq~qr 158 (289)
T PRK13645 85 VKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKK--VPELLKLV-QLPED---YVKRSPFELSGGQKRR 158 (289)
T ss_pred HHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHH--HHHHHHHc-CCChh---HhcCChhhCCHHHHHH
Confidence 456788899999998 4677899999987642 1222222221 12222222 33322 3456678999999999
Q ss_pred HHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEccCchhHh-hcCEEEEEECCEEEEecChhHH
Q 001438 529 IAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIR-NADVIAVVQGRKIVKTGSHEEL 605 (1077)
Q Consensus 529 i~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l 605 (1077)
++||||++.+|++|||||||++||+.+++.+.+.|+++. .++|+|++||+++.+. .||+|++|++|++++.|+++++
T Consensus 159 v~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 238 (289)
T PRK13645 159 VALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFEI 238 (289)
T ss_pred HHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999998874 3899999999999875 4999999999999999999988
Q ss_pred hcC
Q 001438 606 ISN 608 (1077)
Q Consensus 606 ~~~ 608 (1077)
.+.
T Consensus 239 ~~~ 241 (289)
T PRK13645 239 FSN 241 (289)
T ss_pred hcC
Confidence 654
No 196
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=1e-40 Score=361.83 Aligned_cols=217 Identities=33% Similarity=0.549 Sum_probs=182.7
Q ss_pred EEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCC--HHHHhhh
Q 001438 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLD--LKWLRQQ 459 (1077)
Q Consensus 382 i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~--~~~~r~~ 459 (1077)
++++|++++|++ .++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ...+|++
T Consensus 2 l~~~~l~~~~~~---~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (240)
T PRK09493 2 IEFKNVSKHFGP---TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQE 78 (240)
T ss_pred EEEEeEEEEECC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhc
Confidence 689999999963 35899999999999999999999999999999999999999999999999987643 3567788
Q ss_pred eeEEccCCCccc-ccHHHHHhcCCC---CCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHh
Q 001438 460 IGLVNQEPALFA-TTIRENILYGKD---DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAI 535 (1077)
Q Consensus 460 i~~v~Q~~~lf~-~ti~~ni~~~~~---~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal 535 (1077)
++|++|++.++. .|++||+.++.. ....++..+ + ..+.++.+ |++.....+...||||||||++||||+
T Consensus 79 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~--~---~~~~l~~~--gl~~~~~~~~~~LS~G~~qrv~la~al 151 (240)
T PRK09493 79 AGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEK--Q---ARELLAKV--GLAERAHHYPSELSGGQQQRVAIARAL 151 (240)
T ss_pred eEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHH--H---HHHHHHHc--CChHHHhcChhhcCHHHHHHHHHHHHH
Confidence 999999999886 499999987531 112222111 1 11223322 445555667789999999999999999
Q ss_pred ccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHhcC
Q 001438 536 VKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISN 608 (1077)
Q Consensus 536 ~~~p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 608 (1077)
+.+|+++||||||++||+++.+.+.+.|+++. +++|+|++||+++.+.. ||++++|++|++++.|+++++.+.
T Consensus 152 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (240)
T PRK09493 152 AVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKN 226 (240)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHhcC
Confidence 99999999999999999999999999998875 58999999999999865 999999999999999999998764
No 197
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-40 Score=368.25 Aligned_cols=219 Identities=29% Similarity=0.501 Sum_probs=182.7
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhe
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 460 (1077)
.++++|++++|+++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...+++++
T Consensus 3 ~l~~~~l~~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i 80 (277)
T PRK13652 3 LIETRDLCYSYSGS--KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFV 80 (277)
T ss_pred eEEEEEEEEEeCCC--CceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhe
Confidence 37899999999632 3589999999999999999999999999999999999999999999999999877777788899
Q ss_pred eEEccCCC--cccccHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhc
Q 001438 461 GLVNQEPA--LFATTIRENILYGKD--DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIV 536 (1077)
Q Consensus 461 ~~v~Q~~~--lf~~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~ 536 (1077)
+|++|+|. +|+.|++||+.++.. ..+.++..+. ...+ ++.+ |+.......+..||||||||++|||||+
T Consensus 81 ~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~--~~~~---l~~~--~l~~~~~~~~~~LS~Gq~qrl~laraL~ 153 (277)
T PRK13652 81 GLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHR--VSSA---LHML--GLEELRDRVPHHLSGGEKKRVAIAGVIA 153 (277)
T ss_pred EEEecCcccccccccHHHHHHhHHHHcCCCHHHHHHH--HHHH---HHHC--CChhHhcCCcccCCHHHHHHHHHHHHHH
Confidence 99999983 677899999987532 1222221111 1111 2211 2233345566799999999999999999
Q ss_pred cCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEccCchhHh-hcCEEEEEECCEEEEecChhHHhcC
Q 001438 537 KNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIR-NADVIAVVQGRKIVKTGSHEELISN 608 (1077)
Q Consensus 537 ~~p~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 608 (1077)
.+|++|||||||++||+.+.+.+.+.++++.+ ++|+|++||+++.+. .||+|++|++|++++.|+++++.+.
T Consensus 154 ~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 228 (277)
T PRK13652 154 MEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQ 228 (277)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHhcC
Confidence 99999999999999999999999999988753 799999999999985 5999999999999999999998754
No 198
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=7.4e-41 Score=353.45 Aligned_cols=200 Identities=37% Similarity=0.569 Sum_probs=177.9
Q ss_pred EEEEeEEEEcCCCCC--cccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhh
Q 001438 382 IEFKDVSFCYPSRPD--VAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQ 459 (1077)
Q Consensus 382 i~~~~v~~~y~~~~~--~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~ 459 (1077)
++++||+++|++..+ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| +
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-------------~ 67 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-------------S 67 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC-------------E
Confidence 478999999975311 3599999999999999999999999999999999999999999999999 5
Q ss_pred eeEEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccCC
Q 001438 460 IGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNP 539 (1077)
Q Consensus 460 i~~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~p 539 (1077)
|+|++|+|.+|+.|++||+.++.. ...++..++++..++.+++..+|.|+++.+++++.+||||||||++||||++.+|
T Consensus 68 i~~~~q~~~l~~~t~~enl~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p 146 (204)
T cd03250 68 IAYVSQEPWIQNGTIRENILFGKP-FDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDA 146 (204)
T ss_pred EEEEecCchhccCcHHHHhccCCC-cCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCC
Confidence 999999999999999999998743 2344556666676777888899999999999999999999999999999999999
Q ss_pred CEEEEeCcCCCCCHHHHHHHHH-HHHHH-hCCCeEEEEccCchhHhhcCEEEEEECCE
Q 001438 540 SILLLDEATSALDAESENSVQE-ALDRV-MVGRTTVVVAHRLSTIRNADVIAVVQGRK 595 (1077)
Q Consensus 540 ~illlDEpts~lD~~~~~~i~~-~l~~~-~~~~t~i~vtH~~~~~~~~d~i~~l~~G~ 595 (1077)
+++||||||++||+++.+.+.+ .+++. .+++|+|++||+++.+..||++++|++|+
T Consensus 147 ~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~l~~G~ 204 (204)
T cd03250 147 DIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204 (204)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEEEEeCCC
Confidence 9999999999999999988877 45555 34799999999999988899999999985
No 199
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-40 Score=366.74 Aligned_cols=220 Identities=32% Similarity=0.537 Sum_probs=183.8
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhe
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 460 (1077)
.++++|++++|++. .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...+|+++
T Consensus 7 ~l~i~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 85 (269)
T PRK13648 7 IIVFKNVSFQYQSD-ASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHI 85 (269)
T ss_pred eEEEEEEEEEcCCC-CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhe
Confidence 58999999999743 23589999999999999999999999999999999999999999999999999888878888899
Q ss_pred eEEccCCC-cc-cccHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhc
Q 001438 461 GLVNQEPA-LF-ATTIRENILYGKDD--ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIV 536 (1077)
Q Consensus 461 ~~v~Q~~~-lf-~~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~ 536 (1077)
+|++|+|. +| ..|+++|+.++... ...++..+ +...+.+.+ |+.......+.+||||||||++||||++
T Consensus 86 ~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~-----~l~~~~~~~~~~LS~G~~qrl~laral~ 158 (269)
T PRK13648 86 GIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHR--RVSEALKQV-----DMLERADYEPNALSGGQKQRVAIAGVLA 158 (269)
T ss_pred eEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHH--HHHHHHHHc-----CCchhhhCCcccCCHHHHHHHHHHHHHH
Confidence 99999995 44 45899999886421 12222211 111222222 2222344567799999999999999999
Q ss_pred cCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEccCchhHhhcCEEEEEECCEEEEecChhHHhcC
Q 001438 537 KNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISN 608 (1077)
Q Consensus 537 ~~p~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 608 (1077)
.+|+++||||||++||+.+.+.+.+.|+++. .++|+|++||+++.+..||+|++|++|++++.|+++++..+
T Consensus 159 ~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 232 (269)
T PRK13648 159 LNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDH 232 (269)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEEecCHHHHhcC
Confidence 9999999999999999999999999998874 37899999999999878999999999999999999998654
No 200
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-40 Score=364.48 Aligned_cols=224 Identities=30% Similarity=0.510 Sum_probs=182.8
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccC--C---CccEEEECCeeCCCC--CH
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYE--P---LSGEILLDGNNIKGL--DL 453 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~--~---~~G~i~~~g~~~~~~--~~ 453 (1077)
.++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++ | ++|+|.++|+++... +.
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~ 81 (252)
T PRK14239 5 ILQVSDLSVYYNK---KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDT 81 (252)
T ss_pred eEEEEeeEEEECC---eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccch
Confidence 4899999999974 358999999999999999999999999999999999853 6 499999999998643 34
Q ss_pred HHHhhheeEEccCCCcccccHHHHHhcCCC--CC-CHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHH
Q 001438 454 KWLRQQIGLVNQEPALFATTIRENILYGKD--DA-TMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIA 530 (1077)
Q Consensus 454 ~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~--~~-~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~ 530 (1077)
..+|+.++|+||++.+|+.|++||+.++.. .. ..+...+. .....+.+ .+..+..+..+..+.+||||||||++
T Consensus 82 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~--~~~~l~~~-~l~~~~~~~~~~~~~~LS~G~~qrv~ 158 (252)
T PRK14239 82 VDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEA--VEKSLKGA-SIWDEVKDRLHDSALGLSGGQQQRVC 158 (252)
T ss_pred HhhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHH--HHHHHHHc-CCchhHHHHHhcCcccCCHHHHHHHH
Confidence 567788999999999999999999987531 11 11111111 11111111 12222334556778899999999999
Q ss_pred HHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHhcCC
Q 001438 531 ISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISNP 609 (1077)
Q Consensus 531 lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 609 (1077)
||||++.+|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++.+++
T Consensus 159 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 238 (252)
T PRK14239 159 IARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQMFMNP 238 (252)
T ss_pred HHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCC
Confidence 999999999999999999999999999999999988767999999999998754 9999999999999999999987654
Q ss_pred C
Q 001438 610 N 610 (1077)
Q Consensus 610 ~ 610 (1077)
.
T Consensus 239 ~ 239 (252)
T PRK14239 239 K 239 (252)
T ss_pred C
Confidence 3
No 201
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=100.00 E-value=9.2e-41 Score=364.70 Aligned_cols=222 Identities=31% Similarity=0.504 Sum_probs=184.3
Q ss_pred EEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCC---------
Q 001438 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLD--------- 452 (1077)
Q Consensus 382 i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~--------- 452 (1077)
|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++..++
T Consensus 1 i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 77 (252)
T TIGR03005 1 VRFSDVTKRFGI---LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPA 77 (252)
T ss_pred CEEEEEEEEeCC---eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccccccccccccc
Confidence 578999999974 35899999999999999999999999999999999999999999999999986543
Q ss_pred ----HHHHhhheeEEccCCCccc-ccHHHHHhcCCC---CCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChH
Q 001438 453 ----LKWLRQQIGLVNQEPALFA-TTIRENILYGKD---DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGG 524 (1077)
Q Consensus 453 ----~~~~r~~i~~v~Q~~~lf~-~ti~~ni~~~~~---~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgG 524 (1077)
...+|+.++|++|++.+|+ .|++||+.++.. ....++..+ ...+.++.+ |++......+.+||||
T Consensus 78 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LS~G 150 (252)
T TIGR03005 78 DEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEK-----RAMELLDMV--GLADKADHMPAQLSGG 150 (252)
T ss_pred chhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CChhHhhcChhhcCHH
Confidence 2356788999999999886 699999987521 112222111 112223333 4445566777899999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEccCchhHh-hcCEEEEEECCEEEEecC
Q 001438 525 QKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIR-NADVIAVVQGRKIVKTGS 601 (1077)
Q Consensus 525 qkqri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~vtH~~~~~~-~~d~i~~l~~G~i~~~g~ 601 (1077)
||||++||||++.+|+++||||||++||+.++..+.+.|+++.+ ++|+|++||+++.+. .||++++|++|++++.|+
T Consensus 151 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~ 230 (252)
T TIGR03005 151 QQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGK 230 (252)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999988743 899999999999985 499999999999999999
Q ss_pred hhHHhcCCCchH
Q 001438 602 HEELISNPNSAY 613 (1077)
Q Consensus 602 ~~~l~~~~~~~~ 613 (1077)
++++.+.+...+
T Consensus 231 ~~~~~~~~~~~~ 242 (252)
T TIGR03005 231 PDEIFRQPKEER 242 (252)
T ss_pred HHHHhcCCCcHH
Confidence 999976644434
No 202
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-40 Score=368.31 Aligned_cols=221 Identities=29% Similarity=0.521 Sum_probs=185.2
Q ss_pred ccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCc---cEEEECCeeCCCCCHHHH
Q 001438 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLS---GEILLDGNNIKGLDLKWL 456 (1077)
Q Consensus 380 ~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~---G~i~~~g~~~~~~~~~~~ 456 (1077)
..|+++|++++|++. ..++++|+||+|++||+++|+||||||||||+++|+|+++|++ |+|.++|+++...+...+
T Consensus 4 ~~l~i~~l~~~~~~~-~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~ 82 (282)
T PRK13640 4 NIVEFKHVSFTYPDS-KKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDI 82 (282)
T ss_pred ceEEEEEEEEEcCCC-CccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHH
Confidence 368999999999643 2358999999999999999999999999999999999999998 899999999987777778
Q ss_pred hhheeEEccCCC--cccccHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHH
Q 001438 457 RQQIGLVNQEPA--LFATTIRENILYGKDD--ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAIS 532 (1077)
Q Consensus 457 r~~i~~v~Q~~~--lf~~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lA 532 (1077)
++++||++|+|. +++.|++|||.++... .+.++..+.+ .+.++.+ |+.........+||||||||++||
T Consensus 83 ~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~-----~~~l~~~--~L~~~~~~~~~~LS~G~~qrv~la 155 (282)
T PRK13640 83 REKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIV-----RDVLADV--GMLDYIDSEPANLSGGQKQRVAIA 155 (282)
T ss_pred HhheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHH-----HHHHHHC--CChhHhcCCcccCCHHHHHHHHHH
Confidence 889999999984 5577999999876422 2232221111 1112222 333445667789999999999999
Q ss_pred HHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEccCchhHhhcCEEEEEECCEEEEecChhHHhcC
Q 001438 533 RAIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISN 608 (1077)
Q Consensus 533 Ral~~~p~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 608 (1077)
||++.+|+++||||||++||+.+.+.+.+.|+++. .|+|+|++||+++.+..||++++|++|++++.|+++++...
T Consensus 156 ral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 233 (282)
T PRK13640 156 GILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIFSK 233 (282)
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999999999999998875 38999999999999988999999999999999999998754
No 203
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-40 Score=369.78 Aligned_cols=220 Identities=30% Similarity=0.526 Sum_probs=181.8
Q ss_pred EEEEeEEEEcCCCC--CcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCC----CHHH
Q 001438 382 IEFKDVSFCYPSRP--DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGL----DLKW 455 (1077)
Q Consensus 382 i~~~~v~~~y~~~~--~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~----~~~~ 455 (1077)
++++|++++|++.. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++... +...
T Consensus 3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ 82 (280)
T ss_pred EEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHH
Confidence 78999999997431 13589999999999999999999999999999999999999999999999998754 3456
Q ss_pred HhhheeEEccCC--CcccccHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHhcCccchh-hhhcCCCCCCChHHHHHHH
Q 001438 456 LRQQIGLVNQEP--ALFATTIRENILYGKD--DATMEEITRAAKLSEAMSFISNLPERFE-TQVGERGIQLSGGQKQRIA 530 (1077)
Q Consensus 456 ~r~~i~~v~Q~~--~lf~~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~~~~~g~~LSgGqkqri~ 530 (1077)
+|+.|+|+||+| .+|+.|++||+.++.. ..+.++..+.+ ... ++.+ |++ ........+||||||||++
T Consensus 83 ~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~--~~~---l~~~--~l~~~~~~~~~~~LSgG~~qrv~ 155 (280)
T PRK13649 83 IRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALA--REK---LALV--GISESLFEKNPFELSGGQMRRVA 155 (280)
T ss_pred HHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHH--HHH---HHHc--CCChhhhhCCcccCCHHHHHHHH
Confidence 788899999998 5788899999987532 12222222211 111 2211 232 2345667799999999999
Q ss_pred HHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHhcC
Q 001438 531 ISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISN 608 (1077)
Q Consensus 531 lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 608 (1077)
||||++.+|++|||||||++||+.+++.+.+.|+++. +++|+|++||+++.+.. ||++++|++|++++.|+++++.+.
T Consensus 156 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 235 (280)
T PRK13649 156 IAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDIFQD 235 (280)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999999999999999999998875 47999999999998865 999999999999999999998653
No 204
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=3.9e-41 Score=355.89 Aligned_cols=199 Identities=33% Similarity=0.544 Sum_probs=166.4
Q ss_pred EEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhheeE
Q 001438 383 EFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGL 462 (1077)
Q Consensus 383 ~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 462 (1077)
+++|++++|++. .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ...+++++|
T Consensus 1 ~~~~l~~~~~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~---~~~~~~i~~ 75 (205)
T cd03226 1 RIENISFSYKKG--TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA---KERRKSIGY 75 (205)
T ss_pred CcccEEEEeCCc--CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh---HHhhcceEE
Confidence 468999999641 358999999999999999999999999999999999999999999999998854 456778999
Q ss_pred EccCC--CcccccHHHHHhcCCCCCC--HHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccC
Q 001438 463 VNQEP--ALFATTIRENILYGKDDAT--MEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKN 538 (1077)
Q Consensus 463 v~Q~~--~lf~~ti~~ni~~~~~~~~--~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~ 538 (1077)
++|+| .+++.|++||+.++.+... .+++.++++.. |++........+||||||||++||||++.+
T Consensus 76 ~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LS~G~~qrv~laral~~~ 144 (205)
T cd03226 76 VMQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDL-----------DLYALKERHPLSLSGGQKQRLAIAAALLSG 144 (205)
T ss_pred EecChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHc-----------CCchhcCCCchhCCHHHHHHHHHHHHHHhC
Confidence 99998 4677899999988643221 12222222222 222234455668999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHHH-hCCCeEEEEccCchhHhh-cCEEEEEECCEEE
Q 001438 539 PSILLLDEATSALDAESENSVQEALDRV-MVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIV 597 (1077)
Q Consensus 539 p~illlDEpts~lD~~~~~~i~~~l~~~-~~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~ 597 (1077)
|+++||||||++||+.+.+.+.+.|+++ .+++|+|++||+++.+.. ||++++|++|+++
T Consensus 145 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 145 KDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 9999999999999999999999999887 468999999999999875 9999999999974
No 205
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-40 Score=361.99 Aligned_cols=225 Identities=30% Similarity=0.489 Sum_probs=184.4
Q ss_pred ccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCC-----CccEEEECCeeCCCC--C
Q 001438 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEP-----LSGEILLDGNNIKGL--D 452 (1077)
Q Consensus 380 ~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~-----~~G~i~~~g~~~~~~--~ 452 (1077)
..++++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++... +
T Consensus 3 ~~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~ 79 (251)
T PRK14270 3 IKMESKNLNLWYGE---KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVD 79 (251)
T ss_pred cEEEEEEeEEEECC---eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEeccccccc
Confidence 35899999999963 3589999999999999999999999999999999999875 799999999998653 3
Q ss_pred HHHHhhheeEEccCCCcccccHHHHHhcCCCC--C-CHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHH
Q 001438 453 LKWLRQQIGLVNQEPALFATTIRENILYGKDD--A-TMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRI 529 (1077)
Q Consensus 453 ~~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~~--~-~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri 529 (1077)
....|+.++|+||++.+|+.|++||+.++... . +.++..+ +...+.+.+ .+.+++..........||||||||+
T Consensus 80 ~~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~--~~~~~l~~~-~l~~~~~~~~~~~~~~LS~G~~qrv 156 (251)
T PRK14270 80 VVELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDK--IVEWALKKA-ALWDEVKDDLKKSALKLSGGQQQRL 156 (251)
T ss_pred HHHHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHH--HHHHHHHHc-CCchhhhhHhhCCcccCCHHHHHHH
Confidence 45667889999999999999999999875321 1 1111111 111122211 2222233345667789999999999
Q ss_pred HHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHhcC
Q 001438 530 AISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISN 608 (1077)
Q Consensus 530 ~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 608 (1077)
+||||++.+|+++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+++++..+
T Consensus 157 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 236 (251)
T PRK14270 157 CIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKIFLE 236 (251)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCHHHHhcC
Confidence 9999999999999999999999999999999999988777999999999999865 999999999999999999998765
Q ss_pred CC
Q 001438 609 PN 610 (1077)
Q Consensus 609 ~~ 610 (1077)
+.
T Consensus 237 ~~ 238 (251)
T PRK14270 237 PQ 238 (251)
T ss_pred CC
Confidence 43
No 206
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-40 Score=361.79 Aligned_cols=224 Identities=29% Similarity=0.517 Sum_probs=184.5
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCC-----CccEEEECCeeCC-CCCHH
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEP-----LSGEILLDGNNIK-GLDLK 454 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~-----~~G~i~~~g~~~~-~~~~~ 454 (1077)
.++++|+++.|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++. ..+..
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~ 79 (249)
T PRK14253 3 KFNIENLDLFYGE---NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVA 79 (249)
T ss_pred eEEEeccEEEECC---eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchH
Confidence 4889999999973 3589999999999999999999999999999999999986 5999999999985 34566
Q ss_pred HHhhheeEEccCCCcccccHHHHHhcCCCC--CC-HHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHH
Q 001438 455 WLRQQIGLVNQEPALFATTIRENILYGKDD--AT-MEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAI 531 (1077)
Q Consensus 455 ~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~~--~~-~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~l 531 (1077)
.+|+.++|++|++.+|+.|++||+.++... .. .+...+. .....+.+ .+.+++.+.....+.+||||||||++|
T Consensus 80 ~~~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~-~l~~~~~~~~~~~~~~LS~G~~qrv~l 156 (249)
T PRK14253 80 DLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEV--VERSLRGA-ALWDEVKDRLKSHAFGLSGGQQQRLCI 156 (249)
T ss_pred HHHhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHH--HHHHHHHc-CCchhhhHHhhcCcccCCHHHHHHHHH
Confidence 778899999999999999999999876321 11 1111111 11111111 222233345566778999999999999
Q ss_pred HHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHhcCCC
Q 001438 532 SRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISNPN 610 (1077)
Q Consensus 532 ARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~ 610 (1077)
|||++.+|+++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+++++..++.
T Consensus 157 aral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~ 236 (249)
T PRK14253 157 ARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVIFSNPK 236 (249)
T ss_pred HHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHHcCCC
Confidence 99999999999999999999999999999999998777999999999999876 99999999999999999998865433
No 207
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=100.00 E-value=8e-41 Score=354.52 Aligned_cols=203 Identities=27% Similarity=0.457 Sum_probs=171.6
Q ss_pred EEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhee
Q 001438 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (1077)
Q Consensus 382 i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 461 (1077)
|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++... ..++++++
T Consensus 1 l~~~~l~~~~~~---~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~--~~~~~~i~ 75 (208)
T cd03268 1 LKTNDLTKTYGK---KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN--IEALRRIG 75 (208)
T ss_pred CEEEEEEEEECC---eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch--HHHHhhEE
Confidence 478999999963 3699999999999999999999999999999999999999999999999988654 45677899
Q ss_pred EEccCCCccc-ccHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccC
Q 001438 462 LVNQEPALFA-TTIRENILYGKD--DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKN 538 (1077)
Q Consensus 462 ~v~Q~~~lf~-~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~ 538 (1077)
|+||++.+++ .|++||+.++.. ....+++.++++..+ ++......+.+||||||||++||||++.+
T Consensus 76 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LS~G~~qrv~la~al~~~ 144 (208)
T cd03268 76 ALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVG-----------LKDSAKKKVKGFSLGMKQRLGIALALLGN 144 (208)
T ss_pred EecCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcC-----------CHHHHhhhHhhCCHHHHHHHHHHHHHhcC
Confidence 9999998885 599999987532 122233333333322 22334455678999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHhh-cCEEEEEECCEEEEec
Q 001438 539 PSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTG 600 (1077)
Q Consensus 539 p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g 600 (1077)
|+++||||||++||+.+.+.+.+.|++.. +++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 145 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 145 PDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred CCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999998875 58999999999999865 9999999999998765
No 208
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-40 Score=362.75 Aligned_cols=226 Identities=30% Similarity=0.538 Sum_probs=183.4
Q ss_pred EEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccC-----CCccEEEECCeeCCCCC--HH
Q 001438 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYE-----PLSGEILLDGNNIKGLD--LK 454 (1077)
Q Consensus 382 i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~-----~~~G~i~~~g~~~~~~~--~~ 454 (1077)
-+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++...+ ..
T Consensus 6 ~~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 82 (251)
T PRK14244 6 ASVKNLNLWYGS---KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVV 82 (251)
T ss_pred EEeeeEEEEECC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchH
Confidence 478999999963 358999999999999999999999999999999999986 47999999999886543 33
Q ss_pred HHhhheeEEccCCCcccccHHHHHhcCCC--CC--CHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHH
Q 001438 455 WLRQQIGLVNQEPALFATTIRENILYGKD--DA--TMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIA 530 (1077)
Q Consensus 455 ~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~--~~--~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~ 530 (1077)
.+|++++|+||++.+|+.|++||+.++.. .. ..++..+ ....+.+.+ .+.+.+.+.++..+.+||||||||++
T Consensus 83 ~~~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~--~~~~~l~~~-~l~~~~~~~~~~~~~~LS~Gq~qrv~ 159 (251)
T PRK14244 83 LLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDE--IVEKSLTSV-GLWEELGDRLKDSAFELSGGQQQRLC 159 (251)
T ss_pred HHhhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHH--HHHHHHHHc-CCCchhhhHhhcChhhCCHHHHHHHH
Confidence 56788999999999999999999987521 11 1111111 111122211 12222233456677899999999999
Q ss_pred HHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHhcCC
Q 001438 531 ISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISNP 609 (1077)
Q Consensus 531 lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 609 (1077)
||||++.+|+++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.+
T Consensus 160 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~ 239 (251)
T PRK14244 160 IARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEIFKNP 239 (251)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCCHHHHhcCC
Confidence 999999999999999999999999999999999988778999999999999865 9999999999999999999998764
Q ss_pred CchH
Q 001438 610 NSAY 613 (1077)
Q Consensus 610 ~~~~ 613 (1077)
...+
T Consensus 240 ~~~~ 243 (251)
T PRK14244 240 QSSK 243 (251)
T ss_pred CChH
Confidence 4433
No 209
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=1.9e-40 Score=360.39 Aligned_cols=219 Identities=23% Similarity=0.412 Sum_probs=183.3
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHH-hhh
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWL-RQQ 459 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~-r~~ 459 (1077)
.|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+.... ++.
T Consensus 2 ~i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 78 (242)
T TIGR03411 2 ILYLEGLSVSFDG---FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAG 78 (242)
T ss_pred eEEEEeeEEEcCC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcC
Confidence 3789999999964 358999999999999999999999999999999999999999999999999887766543 457
Q ss_pred eeEEccCCCcccc-cHHHHHhcCCCCCC--------HHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHH
Q 001438 460 IGLVNQEPALFAT-TIRENILYGKDDAT--------MEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIA 530 (1077)
Q Consensus 460 i~~v~Q~~~lf~~-ti~~ni~~~~~~~~--------~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~ 530 (1077)
++|++|++.+|++ |++||+.++..... ........+ ..+.++.+ |++........+||||||||++
T Consensus 79 i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~--~l~~~~~~~~~~LS~Ge~qrv~ 153 (242)
T TIGR03411 79 IGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDR---IEEVLETI--GLADEADRLAGLLSHGQKQWLE 153 (242)
T ss_pred eeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHH---HHHHHHHc--CCchhhcCChhhCCHHHHHHHH
Confidence 9999999999987 99999987532100 000001111 12223322 3444556677899999999999
Q ss_pred HHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHhc
Q 001438 531 ISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELIS 607 (1077)
Q Consensus 531 lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 607 (1077)
||||++.+|+++||||||++||+.+++.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 154 laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~ 231 (242)
T TIGR03411 154 IGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQVQA 231 (242)
T ss_pred HHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCHHHHhc
Confidence 999999999999999999999999999999999988778999999999999875 99999999999999999999864
No 210
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=100.00 E-value=7.8e-41 Score=356.11 Aligned_cols=207 Identities=35% Similarity=0.566 Sum_probs=171.9
Q ss_pred EEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhee
Q 001438 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (1077)
Q Consensus 382 i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 461 (1077)
|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+.. +++++
T Consensus 1 i~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~--~~~i~ 75 (213)
T cd03301 1 VELENVTKRFGN---VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPK--DRDIA 75 (213)
T ss_pred CEEEeeEEEECC---eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcc--cceEE
Confidence 478999999974 3589999999999999999999999999999999999999999999999998765432 46799
Q ss_pred EEccCCCccc-ccHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccC
Q 001438 462 LVNQEPALFA-TTIRENILYGKDD--ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKN 538 (1077)
Q Consensus 462 ~v~Q~~~lf~-~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~ 538 (1077)
|++|++.+|+ .|++||+.++... ...++..+.+ . +.++.+ |++........+||||||||++||||++.+
T Consensus 76 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~--~---~~l~~~--~l~~~~~~~~~~LS~G~~qr~~laral~~~ 148 (213)
T cd03301 76 MVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERV--R---EVAELL--QIEHLLDRKPKQLSGGQRQRVALGRAIVRE 148 (213)
T ss_pred EEecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHH--H---HHHHHc--CCHHHHhCChhhCCHHHHHHHHHHHHHhcC
Confidence 9999999986 4999999875321 1222221111 1 112222 344445667789999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEccCchhHhh-cCEEEEEECCEEEEec
Q 001438 539 PSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTG 600 (1077)
Q Consensus 539 p~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g 600 (1077)
|+++||||||++||+.+.+.+.+.|+++. .++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 149 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 149 PKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 99999999999999999999999998874 38999999999998875 9999999999999875
No 211
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-40 Score=365.30 Aligned_cols=225 Identities=27% Similarity=0.502 Sum_probs=187.5
Q ss_pred ccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCC-----CccEEEECCeeCCCCC-H
Q 001438 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEP-----LSGEILLDGNNIKGLD-L 453 (1077)
Q Consensus 380 ~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~-----~~G~i~~~g~~~~~~~-~ 453 (1077)
..++++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++.+.+ .
T Consensus 20 ~~l~i~nl~~~~~~---~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~ 96 (276)
T PRK14271 20 PAMAAVNLTLGFAG---KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDV 96 (276)
T ss_pred cEEEEeeEEEEECC---EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchh
Confidence 35899999999974 3689999999999999999999999999999999999986 7999999999987653 3
Q ss_pred HHHhhheeEEccCCCcccccHHHHHhcCCC---CCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHH
Q 001438 454 KWLRQQIGLVNQEPALFATTIRENILYGKD---DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIA 530 (1077)
Q Consensus 454 ~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~---~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~ 530 (1077)
..+|++++|++|++.+|+.|++||+.++.. ..+.++..+.. ....+.+ .+++.+.+.....+.+||||||||++
T Consensus 97 ~~~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~--~~~l~~~-~l~~~~~~~l~~~~~~LSgGq~qrl~ 173 (276)
T PRK14271 97 LEFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVA--QARLTEV-GLWDAVKDRLSDSPFRLSGGQQQLLC 173 (276)
T ss_pred HHHhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHH--HHHHHHc-CCCchhhhHhhCCcccCCHHHHHHHH
Confidence 567889999999999999999999987632 12333322211 1111212 23333334566778899999999999
Q ss_pred HHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHhcCC
Q 001438 531 ISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISNP 609 (1077)
Q Consensus 531 lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 609 (1077)
||||++.+|+++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+++++.+.+
T Consensus 174 LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~ 253 (276)
T PRK14271 174 LARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFSSP 253 (276)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCc
Confidence 999999999999999999999999999999999988667899999999998765 9999999999999999999998754
Q ss_pred C
Q 001438 610 N 610 (1077)
Q Consensus 610 ~ 610 (1077)
.
T Consensus 254 ~ 254 (276)
T PRK14271 254 K 254 (276)
T ss_pred C
Confidence 3
No 212
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-40 Score=361.07 Aligned_cols=217 Identities=23% Similarity=0.433 Sum_probs=182.8
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHH-Hhhh
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKW-LRQQ 459 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~-~r~~ 459 (1077)
.++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .|+.
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (241)
T PRK10895 3 TLTAKNLAKAYKG---RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRG 79 (241)
T ss_pred eEEEeCcEEEeCC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhC
Confidence 3789999999963 35999999999999999999999999999999999999999999999999998776544 5678
Q ss_pred eeEEccCCCcccc-cHHHHHhcCCCC---CCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHh
Q 001438 460 IGLVNQEPALFAT-TIRENILYGKDD---ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAI 535 (1077)
Q Consensus 460 i~~v~Q~~~lf~~-ti~~ni~~~~~~---~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal 535 (1077)
++|+||++.+|+. |++||+.++... .+.++.. ....+.++.+ |++........+||||||||++||||+
T Consensus 80 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral 152 (241)
T PRK10895 80 IGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQRE-----DRANELMEEF--HIEHLRDSMGQSLSGGERRRVEIARAL 152 (241)
T ss_pred eEEeccCCcccccCcHHHHHhhhhhcccccCHHHHH-----HHHHHHHHHc--CCHHHhhcchhhCCHHHHHHHHHHHHH
Confidence 9999999999875 999999875321 1111111 1122233333 444556677789999999999999999
Q ss_pred ccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHhc
Q 001438 536 VKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELIS 607 (1077)
Q Consensus 536 ~~~p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 607 (1077)
+.+|++|||||||++||+.+.+.+.+.++++. +++|+|++||+++.+.. ||++++|++|++++.|+++++..
T Consensus 153 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 226 (241)
T PRK10895 153 AANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQ 226 (241)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHhc
Confidence 99999999999999999999999999998765 58999999999987755 99999999999999999999865
No 213
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-40 Score=361.74 Aligned_cols=228 Identities=29% Similarity=0.508 Sum_probs=184.2
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCC-----CccEEEECCeeCCCC--CH
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEP-----LSGEILLDGNNIKGL--DL 453 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~-----~~G~i~~~g~~~~~~--~~ 453 (1077)
.|+++|+++.|++ .++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|.++... +.
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~ 79 (250)
T PRK14262 3 IIEIENFSAYYGE---KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDV 79 (250)
T ss_pred eEEEEeeEEEeCC---ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhH
Confidence 4899999999963 3589999999999999999999999999999999999984 899999999998653 33
Q ss_pred HHHhhheeEEccCCCcccccHHHHHhcCCCC---CCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHH
Q 001438 454 KWLRQQIGLVNQEPALFATTIRENILYGKDD---ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIA 530 (1077)
Q Consensus 454 ~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~~---~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~ 530 (1077)
..+++.++|++|++.+|+.|++||+.++... ...++..+.. ....+.+ .+.+..++..+.++.+||||||||++
T Consensus 80 ~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~--~~~l~~~-~l~~~~~~~~~~~~~~LS~Gq~qr~~ 156 (250)
T PRK14262 80 TEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIV--EESLKKA-ALWDEVKSELNKPGTRLSGGQQQRLC 156 (250)
T ss_pred HHhhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHH--HHHHHHc-CCCchhHHHHhCChhhcCHHHHHHHH
Confidence 4567889999999999999999999875311 1111111111 1111111 12112233456778899999999999
Q ss_pred HHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHh-hcCEEEEEECCEEEEecChhHHhcCC
Q 001438 531 ISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIR-NADVIAVVQGRKIVKTGSHEELISNP 609 (1077)
Q Consensus 531 lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~~ 609 (1077)
||||++.+|+++||||||++||+.+...+.+.|+++.+++|+|++||+++.+. .||+|++|++|++++.|+++++.+++
T Consensus 157 la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 236 (250)
T PRK14262 157 IARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREIVERP 236 (250)
T ss_pred HHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHHhCC
Confidence 99999999999999999999999999999999998877899999999999875 49999999999999999999987653
Q ss_pred CchHH
Q 001438 610 NSAYA 614 (1077)
Q Consensus 610 ~~~~~ 614 (1077)
...+.
T Consensus 237 ~~~~~ 241 (250)
T PRK14262 237 KNKLT 241 (250)
T ss_pred CChHH
Confidence 33333
No 214
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-40 Score=367.13 Aligned_cols=221 Identities=28% Similarity=0.492 Sum_probs=183.5
Q ss_pred cEEEEeEEEEcCCCC---CcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCC-HHHH
Q 001438 381 HIEFKDVSFCYPSRP---DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLD-LKWL 456 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~---~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~-~~~~ 456 (1077)
.++++|++++|++.. .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.. ...+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 83 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDI 83 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHH
Confidence 589999999997431 246999999999999999999999999999999999999999999999999987653 3567
Q ss_pred hhheeEEccCCC--cccccHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHH
Q 001438 457 RQQIGLVNQEPA--LFATTIRENILYGKDD--ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAIS 532 (1077)
Q Consensus 457 r~~i~~v~Q~~~--lf~~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lA 532 (1077)
|++++|+||+|. ++..|+.||+.++... ....+..+. ...+ ++.+ |+.........+||||||||++||
T Consensus 84 ~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~--~~~~---l~~~--gL~~~~~~~~~~LS~G~~qrv~la 156 (280)
T PRK13633 84 RNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRER--VDES---LKKV--GMYEYRRHAPHLLSGGQKQRVAIA 156 (280)
T ss_pred hhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHH--HHHH---HHHC--CCHhHhhCCcccCCHHHHHHHHHH
Confidence 889999999984 6667999999886421 122222111 1111 1111 334445556779999999999999
Q ss_pred HHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEccCchhHhhcCEEEEEECCEEEEecChhHHhcC
Q 001438 533 RAIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISN 608 (1077)
Q Consensus 533 Ral~~~p~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 608 (1077)
||++.+|+++||||||++||+.+.+.+.+.|+++. .++|+|++||+++.+..||++++|++|++++.|+++++..+
T Consensus 157 ral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 234 (280)
T PRK13633 157 GILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEIFKE 234 (280)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEEecCHHHHhcC
Confidence 99999999999999999999999999999999874 38999999999999888999999999999999999998764
No 215
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=1.1e-40 Score=371.97 Aligned_cols=216 Identities=22% Similarity=0.420 Sum_probs=183.2
Q ss_pred EEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhee
Q 001438 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (1077)
Q Consensus 382 i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 461 (1077)
++++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. +...+|+++|
T Consensus 3 l~~~~l~~~~~~---~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~-~~~~~~~~ig 78 (301)
T TIGR03522 3 IRVSSLTKLYGT---QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQ-NPKEVQRNIG 78 (301)
T ss_pred EEEEEEEEEECC---EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-ChHHHHhceE
Confidence 789999999963 469999999999999999999999999999999999999999999999999876 3456788999
Q ss_pred EEccCCCcccc-cHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccC
Q 001438 462 LVNQEPALFAT-TIRENILYGKDD--ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKN 538 (1077)
Q Consensus 462 ~v~Q~~~lf~~-ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~ 538 (1077)
|+||++.+|+. |++||+.+.... ...++..+.+ ..+ ++.+ |++........+||||||||++||||++.+
T Consensus 79 ~~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~--~~~---l~~~--gl~~~~~~~~~~LS~G~~qrv~la~al~~~ 151 (301)
T TIGR03522 79 YLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRV--EEM---IELV--GLRPEQHKKIGQLSKGYRQRVGLAQALIHD 151 (301)
T ss_pred EecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHH--HHH---HHHC--CCchHhcCchhhCCHHHHHHHHHHHHHhcC
Confidence 99999999976 999999764311 1222211111 112 2222 344455667789999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHhcC
Q 001438 539 PSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISN 608 (1077)
Q Consensus 539 p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 608 (1077)
|+++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||||++|++|+++..|+++++...
T Consensus 152 p~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 222 (301)
T TIGR03522 152 PKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSAA 222 (301)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHHh
Confidence 9999999999999999999999999998778999999999998876 999999999999999999998653
No 216
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-40 Score=366.00 Aligned_cols=217 Identities=29% Similarity=0.464 Sum_probs=178.5
Q ss_pred EEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCC--CCCHHHHhhh
Q 001438 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIK--GLDLKWLRQQ 459 (1077)
Q Consensus 382 i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~--~~~~~~~r~~ 459 (1077)
++++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++. +.+...+|++
T Consensus 2 l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (271)
T PRK13638 2 LATSDLWFRYQD---EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQ 78 (271)
T ss_pred eEEEEEEEEcCC---cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhh
Confidence 689999999963 35899999999999999999999999999999999999999999999999985 3344567888
Q ss_pred eeEEccCCC--cccccHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHh
Q 001438 460 IGLVNQEPA--LFATTIRENILYGKD--DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAI 535 (1077)
Q Consensus 460 i~~v~Q~~~--lf~~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal 535 (1077)
++|++|++. ++..|+.||+.++.. ....++..+. .....+.+ |+.........+||||||||++|||||
T Consensus 79 i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~l~~~-----~l~~~~~~~~~~LSgG~~qrl~laraL 151 (271)
T PRK13638 79 VATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRR--VDEALTLV-----DAQHFRHQPIQCLSHGQKKRVAIAGAL 151 (271)
T ss_pred eEEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHH--HHHHHHHc-----CCHhHhcCCchhCCHHHHHHHHHHHHH
Confidence 999999986 566789999987421 1122222111 11122211 222233456678999999999999999
Q ss_pred ccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHhcC
Q 001438 536 VKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISN 608 (1077)
Q Consensus 536 ~~~p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 608 (1077)
+.+|+++||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||++++|++|++++.|+++++...
T Consensus 152 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (271)
T PRK13638 152 VLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFAC 226 (271)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999999999998874 58999999999999865 999999999999999999998754
No 217
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.1e-40 Score=362.18 Aligned_cols=222 Identities=29% Similarity=0.507 Sum_probs=184.3
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccC-----CCccEEEECCeeCCC--CCH
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYE-----PLSGEILLDGNNIKG--LDL 453 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~-----~~~G~i~~~g~~~~~--~~~ 453 (1077)
.|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.. .+.
T Consensus 10 ~l~i~~v~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 86 (264)
T PRK14243 10 VLRTENLNVYYGS---FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDP 86 (264)
T ss_pred EEEEeeeEEEECC---EEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccCh
Confidence 5899999999964 358999999999999999999999999999999999986 479999999998853 345
Q ss_pred HHHhhheeEEccCCCcccccHHHHHhcCCCCC--CH---HHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHH
Q 001438 454 KWLRQQIGLVNQEPALFATTIRENILYGKDDA--TM---EEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQR 528 (1077)
Q Consensus 454 ~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~~~--~~---~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqr 528 (1077)
..+|++++|++|++.+|+.|++||+.++.... .. +++.++++..++. ++++...+..+.+||||||||
T Consensus 87 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~l~~~~~~~~~~LSgGq~qr 159 (264)
T PRK14243 87 VEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALW-------DEVKDKLKQSGLSLSGGQQQR 159 (264)
T ss_pred HHHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCch-------hhHHHHhcCCcccCCHHHHHH
Confidence 66788999999999999889999998764211 11 1112222222221 122233566778999999999
Q ss_pred HHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhh-cCEEEEEE---------CCEEEE
Q 001438 529 IAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQ---------GRKIVK 598 (1077)
Q Consensus 529 i~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~-~d~i~~l~---------~G~i~~ 598 (1077)
++||||++.+|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||+|++|+ +|++++
T Consensus 160 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~~ 239 (264)
T PRK14243 160 LCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVE 239 (264)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEEE
Confidence 99999999999999999999999999999999999988777899999999998865 99999999 899999
Q ss_pred ecChhHHhcCCCch
Q 001438 599 TGSHEELISNPNSA 612 (1077)
Q Consensus 599 ~g~~~~l~~~~~~~ 612 (1077)
.|+++|+.+++...
T Consensus 240 ~~~~~~~~~~~~~~ 253 (264)
T PRK14243 240 FDRTEKIFNSPQQQ 253 (264)
T ss_pred eCCHHHHHhCCCcH
Confidence 99999998654433
No 218
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-40 Score=365.17 Aligned_cols=214 Identities=29% Similarity=0.467 Sum_probs=181.5
Q ss_pred ccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhh
Q 001438 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQ 459 (1077)
Q Consensus 380 ~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~ 459 (1077)
..++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...+|+.
T Consensus 10 ~~l~i~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 86 (265)
T PRK10575 10 TTFALRNVSFRVPG---RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARK 86 (265)
T ss_pred ceEEEeeEEEEECC---EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhh
Confidence 35899999999963 358999999999999999999999999999999999999999999999999988777888889
Q ss_pred eeEEccCCCcccc-cHHHHHhcCCCCC-------CH---HHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHH
Q 001438 460 IGLVNQEPALFAT-TIRENILYGKDDA-------TM---EEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQR 528 (1077)
Q Consensus 460 i~~v~Q~~~lf~~-ti~~ni~~~~~~~-------~~---~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqr 528 (1077)
++|++|++.++.+ |++||+.++.... .. +++.++++.. |++........+||||||||
T Consensus 87 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LSgG~~qr 155 (265)
T PRK10575 87 VAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLV-----------GLKPLAHRLVDSLSGGERQR 155 (265)
T ss_pred eEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHc-----------CCHHHhcCCcccCCHHHHHH
Confidence 9999999877665 9999998763210 11 1122222221 22233445566899999999
Q ss_pred HHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHH
Q 001438 529 IAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEEL 605 (1077)
Q Consensus 529 i~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 605 (1077)
++||||++.+|++|||||||++||+.+.+.+.+.|+++. .++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 156 v~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~~ 235 (265)
T PRK10575 156 AWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAEL 235 (265)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHh
Confidence 999999999999999999999999999999999998874 37999999999999864 999999999999999999887
Q ss_pred hc
Q 001438 606 IS 607 (1077)
Q Consensus 606 ~~ 607 (1077)
..
T Consensus 236 ~~ 237 (265)
T PRK10575 236 MR 237 (265)
T ss_pred cC
Confidence 64
No 219
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.6e-41 Score=357.76 Aligned_cols=209 Identities=33% Similarity=0.509 Sum_probs=171.6
Q ss_pred EEEEeEEEEcCCCC-CcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhe
Q 001438 382 IEFKDVSFCYPSRP-DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (1077)
Q Consensus 382 i~~~~v~~~y~~~~-~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 460 (1077)
++++|++++|++.. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. .++++
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-----~~~~i 75 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG-----PGPDR 75 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc-----ccCcE
Confidence 47899999997421 1469999999999999999999999999999999999999999999999998863 35679
Q ss_pred eEEccCCCccc-ccHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhcc
Q 001438 461 GLVNQEPALFA-TTIRENILYGKD--DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVK 537 (1077)
Q Consensus 461 ~~v~Q~~~lf~-~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~ 537 (1077)
+|+||++.+|+ .|++||+.++.. ....++..+ + ..+.++.+ |++........+||||||||++||||++.
T Consensus 76 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~--~---~~~~l~~~--~l~~~~~~~~~~LSgG~~qrl~la~al~~ 148 (220)
T cd03293 76 GYVFQQDALLPWLTVLDNVALGLELQGVPKAEARE--R---AEELLELV--GLSGFENAYPHQLSGGMRQRVALARALAV 148 (220)
T ss_pred EEEecccccccCCCHHHHHHHHHHHcCCCHHHHHH--H---HHHHHHHc--CChhhhhCCcccCCHHHHHHHHHHHHHHc
Confidence 99999999987 599999987532 111111111 1 11222222 33444556667899999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEccCchhHhh-cCEEEEEE--CCEEEEecCh
Q 001438 538 NPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQ--GRKIVKTGSH 602 (1077)
Q Consensus 538 ~p~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~~~-~d~i~~l~--~G~i~~~g~~ 602 (1077)
+|+++||||||++||+.+++.+.+.|+++. .++|+|++||+++.+.. ||++++|+ +|++++.++.
T Consensus 149 ~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 149 DPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEe
Confidence 999999999999999999999999998873 37999999999998754 99999999 7999998765
No 220
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-40 Score=362.26 Aligned_cols=227 Identities=30% Similarity=0.507 Sum_probs=183.5
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCC-----ccEEEECCeeCCC--CCH
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPL-----SGEILLDGNNIKG--LDL 453 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~-----~G~i~~~g~~~~~--~~~ 453 (1077)
.++++|++++|++ .++++|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++.. .+.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~ 80 (252)
T PRK14272 4 LLSAQDVNIYYGD---KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDP 80 (252)
T ss_pred EEEEeeeEEEECC---EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCH
Confidence 4789999999963 36899999999999999999999999999999999999874 8999999999864 334
Q ss_pred HHHhhheeEEccCCCcccc-cHHHHHhcCCC--CC-CHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHH
Q 001438 454 KWLRQQIGLVNQEPALFAT-TIRENILYGKD--DA-TMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRI 529 (1077)
Q Consensus 454 ~~~r~~i~~v~Q~~~lf~~-ti~~ni~~~~~--~~-~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri 529 (1077)
..+|+.++|++|++.+|+. |++||+.++.. .. ..++..+.+. .....+ .+.++..........+||||||||+
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~--~~l~~~-~l~~~l~~~~~~~~~~LS~G~~qrv 157 (252)
T PRK14272 81 VAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAE--RSLRGA-ALWDEVKDRLKTPATGLSGGQQQRL 157 (252)
T ss_pred HHhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHH--HHHHHc-CcchhhhhhhcCCcccCCHHHHHHH
Confidence 5678889999999999985 99999986532 11 2222222111 111111 1111122233455678999999999
Q ss_pred HHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHhcC
Q 001438 530 AISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISN 608 (1077)
Q Consensus 530 ~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 608 (1077)
+||||++++|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++..+
T Consensus 158 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 237 (252)
T PRK14272 158 CIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQLFTN 237 (252)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 9999999999999999999999999999999999988778999999999999875 999999999999999999999876
Q ss_pred CCchH
Q 001438 609 PNSAY 613 (1077)
Q Consensus 609 ~~~~~ 613 (1077)
+...+
T Consensus 238 ~~~~~ 242 (252)
T PRK14272 238 PRDER 242 (252)
T ss_pred cCcHH
Confidence 44444
No 221
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=100.00 E-value=2.5e-40 Score=362.20 Aligned_cols=220 Identities=30% Similarity=0.528 Sum_probs=182.0
Q ss_pred ccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCC--------
Q 001438 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGL-------- 451 (1077)
Q Consensus 380 ~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~-------- 451 (1077)
+.++++|+++.|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...
T Consensus 4 ~~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (257)
T PRK10619 4 NKLNVIDLHKRYGE---HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLK 80 (257)
T ss_pred ccEEEeeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccc
Confidence 46999999999963 3589999999999999999999999999999999999999999999999988642
Q ss_pred -----CHHHHhhheeEEccCCCcccc-cHHHHHhcCC---CCCCHHHHHHHHHHHhHHHHHhcCccchhhhh-cCCCCCC
Q 001438 452 -----DLKWLRQQIGLVNQEPALFAT-TIRENILYGK---DDATMEEITRAAKLSEAMSFISNLPERFETQV-GERGIQL 521 (1077)
Q Consensus 452 -----~~~~~r~~i~~v~Q~~~lf~~-ti~~ni~~~~---~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~-~~~g~~L 521 (1077)
....+|++++|+||++.+|+. |++||+.++. .....++..+. . .+.++.+ |+.... .....+|
T Consensus 81 ~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~--~---~~~l~~~--gl~~~~~~~~~~~L 153 (257)
T PRK10619 81 VADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARER--A---VKYLAKV--GIDERAQGKYPVHL 153 (257)
T ss_pred cccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHH--H---HHHHHHc--CCChhhhhCCcccC
Confidence 134567889999999999975 9999997642 11111111111 1 1222222 333332 4567899
Q ss_pred ChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHhh-cCEEEEEECCEEEEe
Q 001438 522 SGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKT 599 (1077)
Q Consensus 522 SgGqkqri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~ 599 (1077)
|||||||++|||||+++|+++||||||++||+.+.+.+.+.|+++. +|+|+|+|||+++.+.. ||||++|++|++++.
T Consensus 154 S~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~ 233 (257)
T PRK10619 154 SGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEE 233 (257)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999998875 48999999999999886 999999999999999
Q ss_pred cChhHHhcCC
Q 001438 600 GSHEELISNP 609 (1077)
Q Consensus 600 g~~~~l~~~~ 609 (1077)
|+++++...+
T Consensus 234 ~~~~~~~~~~ 243 (257)
T PRK10619 234 GAPEQLFGNP 243 (257)
T ss_pred CCHHHhhhCc
Confidence 9999987643
No 222
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=1e-40 Score=368.04 Aligned_cols=214 Identities=32% Similarity=0.533 Sum_probs=181.6
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhe
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 460 (1077)
.++++|++++|+. +..+|+||||+|++||++|++||||||||||+++|+|++.|++|+|.++|.+...- ..+.|++|
T Consensus 4 ~i~~~~l~k~~~~--~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~-~~~~~~~i 80 (293)
T COG1131 4 VIEVRNLTKKYGG--DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKE-PAKVRRRI 80 (293)
T ss_pred eeeecceEEEeCC--CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccC-HHHHHhhe
Confidence 4788999999973 24699999999999999999999999999999999999999999999999988765 67788899
Q ss_pred eEEccCCCcccc-cHHHHHhcCCCCC--C----HHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHH
Q 001438 461 GLVNQEPALFAT-TIRENILYGKDDA--T----MEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISR 533 (1077)
Q Consensus 461 ~~v~Q~~~lf~~-ti~~ni~~~~~~~--~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lAR 533 (1077)
||+||+|.+++. |++||+.|..... . .+.+.+.++.. .|++ .-..+...||+|||||++||+
T Consensus 81 gy~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~-------~L~~----~~~~~~~~lS~G~kqrl~ia~ 149 (293)
T COG1131 81 GYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELF-------GLED----KANKKVRTLSGGMKQRLSIAL 149 (293)
T ss_pred EEEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHc-------CCch----hhCcchhhcCHHHHHHHHHHH
Confidence 999999998877 9999998743111 1 12232333222 2333 114556789999999999999
Q ss_pred HhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-C-CeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHhcC
Q 001438 534 AIVKNPSILLLDEATSALDAESENSVQEALDRVMV-G-RTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISN 608 (1077)
Q Consensus 534 al~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~-~-~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 608 (1077)
||+.+|++|||||||++||+.+...+.+.|+++.+ + +|++++||.++.+.. ||+|++|++|+++..|+.+++...
T Consensus 150 aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~~~ 227 (293)
T COG1131 150 ALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEK 227 (293)
T ss_pred HHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHHHh
Confidence 99999999999999999999999999999999864 5 799999999999987 999999999999999999987643
No 223
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.2e-40 Score=365.52 Aligned_cols=228 Identities=29% Similarity=0.495 Sum_probs=183.8
Q ss_pred ccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccC-----CCccEEEECCeeCCCC--C
Q 001438 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYE-----PLSGEILLDGNNIKGL--D 452 (1077)
Q Consensus 380 ~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~-----~~~G~i~~~g~~~~~~--~ 452 (1077)
..++++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+.+ |++|+|.++|+++... +
T Consensus 38 ~~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~ 114 (286)
T PRK14275 38 PHVVAKNFSIYYGE---FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTD 114 (286)
T ss_pred eEEEEeeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccc
Confidence 46899999999964 358999999999999999999999999999999999864 4999999999998643 2
Q ss_pred HHHHhhheeEEccCCCcccccHHHHHhcCCC--CC-CHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHH
Q 001438 453 LKWLRQQIGLVNQEPALFATTIRENILYGKD--DA-TMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRI 529 (1077)
Q Consensus 453 ~~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~--~~-~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri 529 (1077)
...+|++++|++|++.+|+.|++||+.++.. .. ..+...+.+ ....+.+ .+.++........+..||||||||+
T Consensus 115 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~--~~~l~~~-~l~~~l~~~~~~~~~~LSgGq~qrv 191 (286)
T PRK14275 115 EVLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIV--EKSLRKA-ALWDEVSDRLDKNALGLSGGQQQRL 191 (286)
T ss_pred hHHhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHH--HHHHHHh-CCccchhhHhhCChhhCCHHHHHHH
Confidence 3457888999999999998899999987632 11 111111111 1111111 1111222334567789999999999
Q ss_pred HHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHhcC
Q 001438 530 AISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISN 608 (1077)
Q Consensus 530 ~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 608 (1077)
+||||++.+|+++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+++++.++
T Consensus 192 ~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~g~~~~~~~~ 271 (286)
T PRK14275 192 CVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQLFTN 271 (286)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 9999999999999999999999999999999999988777899999999999865 999999999999999999999775
Q ss_pred CCchH
Q 001438 609 PNSAY 613 (1077)
Q Consensus 609 ~~~~~ 613 (1077)
+...+
T Consensus 272 ~~~~~ 276 (286)
T PRK14275 272 PKDRM 276 (286)
T ss_pred CCcHH
Confidence 44433
No 224
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.2e-41 Score=331.36 Aligned_cols=222 Identities=27% Similarity=0.488 Sum_probs=187.2
Q ss_pred ccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHH-hh
Q 001438 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWL-RQ 458 (1077)
Q Consensus 380 ~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~-r~ 458 (1077)
+.+..+|+.++|.++ ++.+++||+|++||+|++.||||+||||.+.++.|+.+|++|+|.+||.|++.++.... |.
T Consensus 3 ~~L~a~~l~K~y~kr---~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArl 79 (243)
T COG1137 3 STLVAENLAKSYKKR---KVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARL 79 (243)
T ss_pred cEEEehhhhHhhCCe---eeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhc
Confidence 357889999999754 58999999999999999999999999999999999999999999999999999987654 55
Q ss_pred heeEEccCCCcccc-cHHHHHhcCCCCC--CHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHh
Q 001438 459 QIGLVNQEPALFAT-TIRENILYGKDDA--TMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAI 535 (1077)
Q Consensus 459 ~i~~v~Q~~~lf~~-ti~~ni~~~~~~~--~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal 535 (1077)
.|||+||||.+|.+ ||+|||..-.+.. +.+..++..++..+ ++.+ .+...-...+.+||||||+|+.|||||
T Consensus 80 GigYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~L---L~ef--~i~hlr~~~a~sLSGGERRR~EIARaL 154 (243)
T COG1137 80 GIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDAL---LEEF--HITHLRDSKAYSLSGGERRRVEIARAL 154 (243)
T ss_pred CcccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHH---HHHh--chHHHhcCcccccccchHHHHHHHHHH
Confidence 69999999999988 9999997543211 11111222222223 2222 344555678899999999999999999
Q ss_pred ccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCch-hHhhcCEEEEEECCEEEEecChhHHhcCC
Q 001438 536 VKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLS-TIRNADVIAVVQGRKIVKTGSHEELISNP 609 (1077)
Q Consensus 536 ~~~p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~-~~~~~d~i~~l~~G~i~~~g~~~~l~~~~ 609 (1077)
..+|+.+|||||++++||.+-..|++.++.++ +|.-+++.-|+.. ++.-|||.+++.+|+|..+|+++|+.+++
T Consensus 155 a~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p~ei~~n~ 230 (243)
T COG1137 155 AANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNNE 230 (243)
T ss_pred hcCCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEEecCCHHHHhcCh
Confidence 99999999999999999999999999998875 5888999999986 67789999999999999999999999763
No 225
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=2.8e-40 Score=361.23 Aligned_cols=217 Identities=28% Similarity=0.449 Sum_probs=181.5
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhe
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 460 (1077)
.|+++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++++
T Consensus 2 ~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i 78 (258)
T PRK13548 2 MLEARNLSVRLGG---RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRR 78 (258)
T ss_pred eEEEEeEEEEeCC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhhe
Confidence 3789999999974 3589999999999999999999999999999999999999999999999999887777778889
Q ss_pred eEEccCCCc-ccccHHHHHhcCCCCC--CHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhc-
Q 001438 461 GLVNQEPAL-FATTIRENILYGKDDA--TMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIV- 536 (1077)
Q Consensus 461 ~~v~Q~~~l-f~~ti~~ni~~~~~~~--~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~- 536 (1077)
+|++|++.+ ++.|++||+.++.... ..++..+. ...+ ++.+ |++........+||||||||++||||++
T Consensus 79 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~--~~~~---l~~~--~l~~~~~~~~~~LSgGe~qrv~la~al~~ 151 (258)
T PRK13548 79 AVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDAL--VAAA---LAQV--DLAHLAGRDYPQLSGGEQQRVQLARVLAQ 151 (258)
T ss_pred EEEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHH--HHHH---HHHc--CCHhHhcCCcccCCHHHHHHHHHHHHHhc
Confidence 999999987 5669999998764211 11111111 1111 2111 3333445567799999999999999999
Q ss_pred -----cCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEccCchhHh-hcCEEEEEECCEEEEecChhHHhc
Q 001438 537 -----KNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIR-NADVIAVVQGRKIVKTGSHEELIS 607 (1077)
Q Consensus 537 -----~~p~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~ 607 (1077)
.+|+++||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+. .||+|++|++|++++.|+++++..
T Consensus 152 ~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (258)
T PRK13548 152 LWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEVLT 230 (258)
T ss_pred ccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHHHhC
Confidence 5999999999999999999999999998875 4899999999999986 599999999999999999988864
No 226
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-40 Score=362.61 Aligned_cols=215 Identities=28% Similarity=0.498 Sum_probs=181.8
Q ss_pred EEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhee
Q 001438 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (1077)
Q Consensus 382 i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 461 (1077)
++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+..++++.++
T Consensus 3 l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (255)
T PRK11231 3 LRTENLTVGYGT---KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLA 79 (255)
T ss_pred EEEEeEEEEECC---EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheE
Confidence 789999999963 36999999999999999999999999999999999999999999999999998877778888899
Q ss_pred EEccCCCcccc-cHHHHHhcCCCC-------CCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHH
Q 001438 462 LVNQEPALFAT-TIRENILYGKDD-------ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISR 533 (1077)
Q Consensus 462 ~v~Q~~~lf~~-ti~~ni~~~~~~-------~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lAR 533 (1077)
|+||++.++++ |++||+.++... ...+...+ ...+.+.+ |++......+..||||||||++|||
T Consensus 80 ~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~-----~l~~~~~~~~~~LS~G~~qrv~lar 151 (255)
T PRK11231 80 LLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNAR---VNQAMEQT-----RINHLADRRLTDLSGGQRQRAFLAM 151 (255)
T ss_pred EecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHH---HHHHHHHc-----CCHHHHcCCcccCCHHHHHHHHHHH
Confidence 99999998876 999999886311 01111111 11111211 2333445667899999999999999
Q ss_pred HhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHhc
Q 001438 534 AIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELIS 607 (1077)
Q Consensus 534 al~~~p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 607 (1077)
|++.+|++|||||||++||+++.+.+.+.|+++. +++|+|++||+++.+.. ||++++|++|++++.|+++++..
T Consensus 152 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 227 (255)
T PRK11231 152 VLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMT 227 (255)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHhcC
Confidence 9999999999999999999999999999998874 48999999999999865 99999999999999999988864
No 227
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=100.00 E-value=1.3e-40 Score=358.56 Aligned_cols=213 Identities=35% Similarity=0.525 Sum_probs=173.2
Q ss_pred EEEEeEEEEcCCCC-CcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCH---HHHh
Q 001438 382 IEFKDVSFCYPSRP-DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDL---KWLR 457 (1077)
Q Consensus 382 i~~~~v~~~y~~~~-~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~---~~~r 457 (1077)
|+++|++++|++.. +.++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+. ..+|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (228)
T cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRR 81 (228)
T ss_pred eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhh
Confidence 68999999996431 1258999999999999999999999999999999999999999999999999987763 5678
Q ss_pred hheeEEccCCC--cc-cccHHHHHhcCCCC---CCHHHHHHHHHHHhHHHHHhcCccch-hhhhcCCCCCCChHHHHHHH
Q 001438 458 QQIGLVNQEPA--LF-ATTIRENILYGKDD---ATMEEITRAAKLSEAMSFISNLPERF-ETQVGERGIQLSGGQKQRIA 530 (1077)
Q Consensus 458 ~~i~~v~Q~~~--lf-~~ti~~ni~~~~~~---~~~~~~~~~~~~~~~~~~i~~l~~g~-~t~~~~~g~~LSgGqkqri~ 530 (1077)
++++|++|++. ++ ..|++||+.++... ...++..+.. . .+.++.+ |+ .........+||||||||++
T Consensus 82 ~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~--~--~~~l~~~--~l~~~~~~~~~~~LS~G~~qrv~ 155 (228)
T cd03257 82 KEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEA--V--LLLLVGV--GLPEEVLNRYPHELSGGQRQRVA 155 (228)
T ss_pred ccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHH--H--HHHHHHC--CCChhHhhCCchhcCHHHHHHHH
Confidence 89999999993 44 46999999764211 1111111110 0 1122222 23 23456677899999999999
Q ss_pred HHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEccCchhHh-hcCEEEEEECCEEEEec
Q 001438 531 ISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIR-NADVIAVVQGRKIVKTG 600 (1077)
Q Consensus 531 lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~vtH~~~~~~-~~d~i~~l~~G~i~~~g 600 (1077)
||||++.+|+++||||||++||+.+++.+.+.|+++.+ ++|+|++||+++.+. .||+|++|++|++++.|
T Consensus 156 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 156 IARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred HHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEecC
Confidence 99999999999999999999999999999999998753 899999999999987 59999999999998764
No 228
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=100.00 E-value=2.7e-40 Score=359.27 Aligned_cols=205 Identities=30% Similarity=0.450 Sum_probs=173.6
Q ss_pred ccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhh
Q 001438 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQ 459 (1077)
Q Consensus 380 ~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~ 459 (1077)
..|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .++++
T Consensus 11 ~~l~i~~l~~~~~~---~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~-----~~~~~ 82 (257)
T PRK11247 11 TPLLLNAVSKRYGE---RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLA-----EARED 82 (257)
T ss_pred CcEEEEEEEEEECC---cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHH-----HhhCc
Confidence 35999999999964 35899999999999999999999999999999999999999999999998753 45678
Q ss_pred eeEEccCCCccc-ccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccC
Q 001438 460 IGLVNQEPALFA-TTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKN 538 (1077)
Q Consensus 460 i~~v~Q~~~lf~-~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~ 538 (1077)
++|++|++.+|+ .|++||+.++......+++.++++. + |+.......+.+||||||||++||||++.+
T Consensus 83 i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~---------~--gl~~~~~~~~~~LSgGqkqrl~laraL~~~ 151 (257)
T PRK11247 83 TRLMFQDARLLPWKKVIDNVGLGLKGQWRDAALQALAA---------V--GLADRANEWPAALSGGQKQRVALARALIHR 151 (257)
T ss_pred eEEEecCccCCCCCcHHHHHHhcccchHHHHHHHHHHH---------c--CChhHhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 999999999987 5999999886422112222222222 2 333445667789999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChh
Q 001438 539 PSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHE 603 (1077)
Q Consensus 539 p~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~ 603 (1077)
|+++||||||++||+.+.+.+.+.|+++. .++|+|+|||+++.+.. ||+|++|++|++++.|+.+
T Consensus 152 p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 152 PGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecccc
Confidence 99999999999999999999999998863 37999999999998764 9999999999999988764
No 229
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=1.1e-40 Score=354.46 Aligned_cols=205 Identities=37% Similarity=0.633 Sum_probs=170.1
Q ss_pred EEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhheeE
Q 001438 383 EFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGL 462 (1077)
Q Consensus 383 ~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 462 (1077)
+++|++++|++. +.++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...++++++|
T Consensus 1 ~~~~l~~~~~~~-~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (211)
T cd03225 1 ELKNLSFSYPDG-ARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGL 79 (211)
T ss_pred CceeEEEecCCC-CeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceE
Confidence 368999999742 1458999999999999999999999999999999999999999999999999987777778889999
Q ss_pred EccCCC--cccccHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccC
Q 001438 463 VNQEPA--LFATTIRENILYGKDD--ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKN 538 (1077)
Q Consensus 463 v~Q~~~--lf~~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~ 538 (1077)
+||++. +++.|++||+.++... ...++..+. . .+.++.+ |++........+||||||||++||||++.+
T Consensus 80 ~~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~--~---~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~laral~~~ 152 (211)
T cd03225 80 VFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEER--V---EEALELV--GLEGLRDRSPFTLSGGQKQRVAIAGVLAMD 152 (211)
T ss_pred EecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHH--H---HHHHHHc--CcHhhhcCCcccCCHHHHHHHHHHHHHhcC
Confidence 999984 5677999999875321 122221111 1 1112222 334445667789999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHhh-cCEEEEEECCE
Q 001438 539 PSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRK 595 (1077)
Q Consensus 539 p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~-~d~i~~l~~G~ 595 (1077)
|+++||||||++||+.+++.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|+
T Consensus 153 p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 153 PDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 99999999999999999999999998875 48999999999999877 99999999985
No 230
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=6.4e-41 Score=340.38 Aligned_cols=220 Identities=30% Similarity=0.521 Sum_probs=188.1
Q ss_pred EEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHH-hhhe
Q 001438 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWL-RQQI 460 (1077)
Q Consensus 382 i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~-r~~i 460 (1077)
++.++++++|++ ..+++|+||++++||+++|+|||||||||++|+|.|+|+|++|+|.++|+||..+++... |..|
T Consensus 5 L~v~~l~k~FGG---l~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi 81 (250)
T COG0411 5 LEVRGLSKRFGG---LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGI 81 (250)
T ss_pred eeeccceeecCC---EEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccc
Confidence 678999999973 468999999999999999999999999999999999999999999999999999998775 4569
Q ss_pred eEEccCCCcccc-cHHHHHhcCCCC------------CCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHH
Q 001438 461 GLVNQEPALFAT-TIRENILYGKDD------------ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQ 527 (1077)
Q Consensus 461 ~~v~Q~~~lf~~-ti~~ni~~~~~~------------~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkq 527 (1077)
+--+|.+.+|++ ||.||+..+... ...++-....+...+++++ |++...++...+||+|||+
T Consensus 82 ~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~v-----gL~~~a~~~A~~LsyG~qR 156 (250)
T COG0411 82 ARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFV-----GLGELADRPAGNLSYGQQR 156 (250)
T ss_pred eeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHc-----CCchhhcchhhcCChhHhH
Confidence 999999999987 999999887321 1112222222233344443 4555556667789999999
Q ss_pred HHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhH
Q 001438 528 RIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEE 604 (1077)
Q Consensus 528 ri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~ 604 (1077)
|+.|||||+.+|++|+||||.++|.+.....+.+.|+++.+ |.|+++|.||++.+.. ||||+||+.|+++.+|+|+|
T Consensus 157 ~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IAeG~P~e 236 (250)
T COG0411 157 RLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTPEE 236 (250)
T ss_pred HHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCcccCCHHH
Confidence 99999999999999999999999999999999999999874 5999999999999865 99999999999999999999
Q ss_pred HhcCC
Q 001438 605 LISNP 609 (1077)
Q Consensus 605 l~~~~ 609 (1077)
+.+++
T Consensus 237 V~~dp 241 (250)
T COG0411 237 VRNNP 241 (250)
T ss_pred HhcCH
Confidence 98764
No 231
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.1e-40 Score=363.36 Aligned_cols=221 Identities=31% Similarity=0.562 Sum_probs=182.4
Q ss_pred cccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccC-----CCccEEEECCeeCCC--C
Q 001438 379 SGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYE-----PLSGEILLDGNNIKG--L 451 (1077)
Q Consensus 379 ~~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~-----~~~G~i~~~g~~~~~--~ 451 (1077)
+..|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.. .
T Consensus 37 ~~~l~i~~l~~~~~~---~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~ 113 (285)
T PRK14254 37 ETVIEARDLNVFYGD---EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADV 113 (285)
T ss_pred CceEEEEEEEEEECC---EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEcccccc
Confidence 345999999999964 358999999999999999999999999999999999997 689999999999864 3
Q ss_pred CHHHHhhheeEEccCCCcccccHHHHHhcCCCC--CCH---HHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHH
Q 001438 452 DLKWLRQQIGLVNQEPALFATTIRENILYGKDD--ATM---EEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQK 526 (1077)
Q Consensus 452 ~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~~--~~~---~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqk 526 (1077)
+...+|++++|++|++.+|+.|++||+.++... ... +++.++++.. .+........+.++.+||||||
T Consensus 114 ~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~-------~l~~~i~~~~~~~~~~LSgGe~ 186 (285)
T PRK14254 114 DPVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRA-------ALWDEVKDQLDSSGLDLSGGQQ 186 (285)
T ss_pred chHhhhccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHc-------CCCchhHHHHhCCcccCCHHHH
Confidence 455678899999999999988999999875311 111 1122222211 1222222345667889999999
Q ss_pred HHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhh-cCEEE-EEECCEEEEecChhH
Q 001438 527 QRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIA-VVQGRKIVKTGSHEE 604 (1077)
Q Consensus 527 qri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~-~d~i~-~l~~G~i~~~g~~~~ 604 (1077)
||++||||++.+|+||||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. |||++ +|++|+|++.|++++
T Consensus 187 qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~g~~~~ 266 (285)
T PRK14254 187 QRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTDK 266 (285)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEeCCHHH
Confidence 9999999999999999999999999999999999999998767899999999999875 99975 579999999999999
Q ss_pred HhcCC
Q 001438 605 LISNP 609 (1077)
Q Consensus 605 l~~~~ 609 (1077)
+..++
T Consensus 267 ~~~~~ 271 (285)
T PRK14254 267 IFENP 271 (285)
T ss_pred HHhCc
Confidence 87643
No 232
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3e-40 Score=358.63 Aligned_cols=217 Identities=28% Similarity=0.492 Sum_probs=180.5
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCC------CCCHH
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIK------GLDLK 454 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~------~~~~~ 454 (1077)
.++++|+++.|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .....
T Consensus 2 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 78 (242)
T PRK11124 2 SIQLNGINCFYGA---HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIR 78 (242)
T ss_pred EEEEEeeEEEECC---eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHH
Confidence 3789999999964 35899999999999999999999999999999999999999999999999873 12345
Q ss_pred HHhhheeEEccCCCcccc-cHHHHHhcCC---CCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHH
Q 001438 455 WLRQQIGLVNQEPALFAT-TIRENILYGK---DDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIA 530 (1077)
Q Consensus 455 ~~r~~i~~v~Q~~~lf~~-ti~~ni~~~~---~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~ 530 (1077)
.+|++++|+||++.+|++ |++||+.++. .....++..+ .+.+.++.+ |++........+||||||||++
T Consensus 79 ~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrv~ 151 (242)
T PRK11124 79 ELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALA-----RAEKLLERL--RLKPYADRFPLHLSGGQQQRVA 151 (242)
T ss_pred HHHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CChhhhhCChhhCCHHHHHHHH
Confidence 678899999999999976 9999997531 1111222111 112223333 4455566677899999999999
Q ss_pred HHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHhc
Q 001438 531 ISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELIS 607 (1077)
Q Consensus 531 lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 607 (1077)
||||++.+|+++||||||++||+.+...+.+.|+++. +++|+|++||+++.+.. ||++++|++|++++.|+++++..
T Consensus 152 laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~ 230 (242)
T PRK11124 152 IARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCFTQ 230 (242)
T ss_pred HHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHhcC
Confidence 9999999999999999999999999999999998875 48999999999999865 99999999999999999988754
No 233
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=100.00 E-value=1.7e-40 Score=340.44 Aligned_cols=172 Identities=40% Similarity=0.677 Sum_probs=161.3
Q ss_pred EEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhee
Q 001438 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (1077)
Q Consensus 382 i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 461 (1077)
++++|++++|++. +.++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.+.+...+|++++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (173)
T cd03246 1 LEVENVSFRYPGA-EPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVG 79 (173)
T ss_pred CEEEEEEEEcCCC-CCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheE
Confidence 4789999999743 245899999999999999999999999999999999999999999999999999888888889999
Q ss_pred EEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccCCCE
Q 001438 462 LVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSI 541 (1077)
Q Consensus 462 ~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~p~i 541 (1077)
|++|++.+|+.|++||+ ||||||||++||||++.+|++
T Consensus 80 ~~~q~~~~~~~tv~~~l------------------------------------------LS~G~~qrv~la~al~~~p~~ 117 (173)
T cd03246 80 YLPQDDELFSGSIAENI------------------------------------------LSGGQRQRLGLARALYGNPRI 117 (173)
T ss_pred EECCCCccccCcHHHHC------------------------------------------cCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999997 999999999999999999999
Q ss_pred EEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHhhcCEEEEEECCEE
Q 001438 542 LLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRNADVIAVVQGRKI 596 (1077)
Q Consensus 542 lllDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~~d~i~~l~~G~i 596 (1077)
+||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+..||++++|++|++
T Consensus 118 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i 173 (173)
T cd03246 118 LVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLASADRILVLEDGRV 173 (173)
T ss_pred EEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEEECCCC
Confidence 99999999999999999999998875 48999999999999888999999999974
No 234
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=100.00 E-value=1.5e-40 Score=354.25 Aligned_cols=206 Identities=33% Similarity=0.534 Sum_probs=170.1
Q ss_pred EEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCH---HHHhh
Q 001438 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDL---KWLRQ 458 (1077)
Q Consensus 382 i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~---~~~r~ 458 (1077)
++++|++++|++. +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+. ..+|+
T Consensus 1 l~~~~l~~~~~~~--~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (214)
T cd03292 1 IEFINVTKTYPNG--TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRR 78 (214)
T ss_pred CEEEEEEEEeCCC--ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHH
Confidence 4789999999643 358999999999999999999999999999999999999999999999999987654 34678
Q ss_pred heeEEccCCCcccc-cHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHh
Q 001438 459 QIGLVNQEPALFAT-TIRENILYGKD--DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAI 535 (1077)
Q Consensus 459 ~i~~v~Q~~~lf~~-ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal 535 (1077)
.++|++|++.+|+. |++||+.++.. ....++..+. .... ++.+ |++........+||||||||++||||+
T Consensus 79 ~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~--~~~~---l~~~--~l~~~~~~~~~~LS~G~~qrv~laral 151 (214)
T cd03292 79 KIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKR--VPAA---LELV--GLSHKHRALPAELSGGEQQRVAIARAI 151 (214)
T ss_pred heEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHH--HHHH---HHHc--CCHHHhhCChhhcCHHHHHHHHHHHHH
Confidence 89999999999985 99999987531 1122221111 1112 2222 233334556678999999999999999
Q ss_pred ccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHhh-cCEEEEEECCEE
Q 001438 536 VKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKI 596 (1077)
Q Consensus 536 ~~~p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i 596 (1077)
+.+|+++||||||++||+++.+.+.+.|+++. +++|+|++||+++.+.. ||++++|++|++
T Consensus 152 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 152 VNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred HcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999998874 58999999999999875 999999999974
No 235
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.1e-40 Score=361.57 Aligned_cols=221 Identities=25% Similarity=0.444 Sum_probs=183.9
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHH-hhh
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWL-RQQ 459 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~-r~~ 459 (1077)
.++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.... |..
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (255)
T PRK11300 5 LLSVSGLMMRFGG---LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMG 81 (255)
T ss_pred eEEEeeEEEEECC---EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcC
Confidence 5899999999963 369999999999999999999999999999999999999999999999999988776554 456
Q ss_pred eeEEccCCCcccc-cHHHHHhcCCCCCC--------------HHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChH
Q 001438 460 IGLVNQEPALFAT-TIRENILYGKDDAT--------------MEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGG 524 (1077)
Q Consensus 460 i~~v~Q~~~lf~~-ti~~ni~~~~~~~~--------------~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgG 524 (1077)
++|++|++.+|+. |++||+.++..... .+...+.. ....+.++.+ |++.....+..+||||
T Consensus 82 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~--gl~~~~~~~~~~LS~G 157 (255)
T PRK11300 82 VVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEAL--DRAATWLERV--GLLEHANRQAGNLAYG 157 (255)
T ss_pred eEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHH--HHHHHHHHhC--ChhhhhhCChhhCCHH
Confidence 9999999999986 99999997631100 00000000 1112223333 4555667788899999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEccCchhHhh-cCEEEEEECCEEEEecC
Q 001438 525 QKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGS 601 (1077)
Q Consensus 525 qkqri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~ 601 (1077)
||||++||||++.+|++|||||||++||+.+.+.+.+.|.++.+ ++|+|++||+++.+.. ||++++|++|++++.|+
T Consensus 158 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~ 237 (255)
T PRK11300 158 QQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGT 237 (255)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEecCC
Confidence 99999999999999999999999999999999999999988743 7899999999999865 99999999999999999
Q ss_pred hhHHhcC
Q 001438 602 HEELISN 608 (1077)
Q Consensus 602 ~~~l~~~ 608 (1077)
++++..+
T Consensus 238 ~~~~~~~ 244 (255)
T PRK11300 238 PEEIRNN 244 (255)
T ss_pred HHHHhhC
Confidence 9988643
No 236
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.8e-40 Score=364.49 Aligned_cols=218 Identities=32% Similarity=0.549 Sum_probs=179.5
Q ss_pred EEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCC--CCHHHHhhh
Q 001438 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKG--LDLKWLRQQ 459 (1077)
Q Consensus 382 i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~--~~~~~~r~~ 459 (1077)
++++|++++|++. .++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. .+...++++
T Consensus 2 l~~~~l~~~~~~~--~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (275)
T PRK13639 2 LETRDLKYSYPDG--TEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKT 79 (275)
T ss_pred EEEEEEEEEeCCC--CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhh
Confidence 6899999999632 358999999999999999999999999999999999999999999999999852 234567889
Q ss_pred eeEEccCC--CcccccHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHh
Q 001438 460 IGLVNQEP--ALFATTIRENILYGKD--DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAI 535 (1077)
Q Consensus 460 i~~v~Q~~--~lf~~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal 535 (1077)
|+|++|+| .+|+.|++||+.++.. ..+.++..+ +...+.+.+ |+.......+.+||||||||++||||+
T Consensus 80 i~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~--~~~~~l~~~-----~L~~~~~~~~~~LS~Gq~qrv~laral 152 (275)
T PRK13639 80 VGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEK--RVKEALKAV-----GMEGFENKPPHHLSGGQKKRVAIAGIL 152 (275)
T ss_pred eEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHH--HHHHHHHHC-----CCchhhcCChhhCCHHHHHHHHHHHHH
Confidence 99999998 4778899999987532 112222111 111222221 222233445678999999999999999
Q ss_pred ccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHh-hcCEEEEEECCEEEEecChhHHhcC
Q 001438 536 VKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIR-NADVIAVVQGRKIVKTGSHEELISN 608 (1077)
Q Consensus 536 ~~~p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 608 (1077)
+.+|+++||||||++||+.+.+.+.+.|.++. +++|+|++||+++.+. .||++++|++|++++.|+++++...
T Consensus 153 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 227 (275)
T PRK13639 153 AMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFSD 227 (275)
T ss_pred hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999999999999875 4899999999999986 5999999999999999999998754
No 237
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.9e-39 Score=394.89 Aligned_cols=206 Identities=25% Similarity=0.373 Sum_probs=156.3
Q ss_pred EEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhee
Q 001438 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (1077)
Q Consensus 382 i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 461 (1077)
|+++|++++|++ ..+|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.++|.. .++
T Consensus 2 i~i~nls~~~g~---~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~-----------~i~ 67 (638)
T PRK10636 2 IVFSSLQIRRGV---RVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNW-----------QLA 67 (638)
T ss_pred EEEEEEEEEeCC---ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCC-----------EEE
Confidence 789999999964 358999999999999999999999999999999999999999999998842 488
Q ss_pred EEccCCCcccccHHHHHhcCCCCC--------------CHHHHHHHHH----------HHhHHHHHhcCccchh-hhhcC
Q 001438 462 LVNQEPALFATTIRENILYGKDDA--------------TMEEITRAAK----------LSEAMSFISNLPERFE-TQVGE 516 (1077)
Q Consensus 462 ~v~Q~~~lf~~ti~~ni~~~~~~~--------------~~~~~~~~~~----------~~~~~~~i~~l~~g~~-t~~~~ 516 (1077)
|++|++..+..|+.+++.-+.... .......... .....+.+..+ |+. .....
T Consensus 68 ~~~q~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l--gl~~~~~~~ 145 (638)
T PRK10636 68 WVNQETPALPQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGL--GFSNEQLER 145 (638)
T ss_pred EEecCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhC--CCCchhhcC
Confidence 999876544456666553211000 0000000000 00111222222 232 22345
Q ss_pred CCCCCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhh-cCEEEEEECCE
Q 001438 517 RGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRK 595 (1077)
Q Consensus 517 ~g~~LSgGqkqri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~-~d~i~~l~~G~ 595 (1077)
...+||||||||++|||||+.+|++|||||||++||+.+...+.+.|++. +.|+|+|||+...+.. ||+|++|++|+
T Consensus 146 ~~~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~--~~tviivsHd~~~l~~~~d~i~~L~~G~ 223 (638)
T PRK10636 146 PVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY--QGTLILISHDRDFLDPIVDKIIHIEQQS 223 (638)
T ss_pred chhhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC--CCeEEEEeCCHHHHHHhcCEEEEEeCCE
Confidence 56789999999999999999999999999999999999999999998875 5699999999999876 99999999999
Q ss_pred EEE-ecChhHH
Q 001438 596 IVK-TGSHEEL 605 (1077)
Q Consensus 596 i~~-~g~~~~l 605 (1077)
+.. .|++++.
T Consensus 224 i~~~~g~~~~~ 234 (638)
T PRK10636 224 LFEYTGNYSSF 234 (638)
T ss_pred EEEecCCHHHH
Confidence 964 5655544
No 238
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.9e-40 Score=372.45 Aligned_cols=233 Identities=21% Similarity=0.357 Sum_probs=185.2
Q ss_pred cEEEEeEEEEcCCC-CCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccC----CCccEEEECCeeCCCCCHHH
Q 001438 381 HIEFKDVSFCYPSR-PDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYE----PLSGEILLDGNNIKGLDLKW 455 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~-~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~----~~~G~i~~~g~~~~~~~~~~ 455 (1077)
-++++|++++|+.. ....+++|+||+|++||+++|+|+||||||||+++|+|+.+ |++|+|.++|+++.+++.+.
T Consensus 3 ~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (330)
T PRK15093 3 LLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRE 82 (330)
T ss_pred eEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHH
Confidence 37899999999642 12468999999999999999999999999999999999986 58999999999998887665
Q ss_pred Hh----hheeEEccCCC--ccc-ccHHHHHhcCCC---C-----CCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCC
Q 001438 456 LR----QQIGLVNQEPA--LFA-TTIRENILYGKD---D-----ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQ 520 (1077)
Q Consensus 456 ~r----~~i~~v~Q~~~--lf~-~ti~~ni~~~~~---~-----~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~ 520 (1077)
++ +.|+||+|+|. +.+ .|+.+|+..... . ...++.. .+..+..+.+ .+++ ........+.+
T Consensus 83 ~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~L~~~-gL~~-~~~~~~~~p~~ 158 (330)
T PRK15093 83 RRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRK--RRAIELLHRV-GIKD-HKDAMRSFPYE 158 (330)
T ss_pred HHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHH--HHHHHHHHHC-CCCC-hHHHHhCCchh
Confidence 43 47999999996 333 489999864211 0 0111111 1111222221 2221 11234566789
Q ss_pred CChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEccCchhHhh-cCEEEEEECCEEE
Q 001438 521 LSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRN-ADVIAVVQGRKIV 597 (1077)
Q Consensus 521 LSgGqkqri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~ 597 (1077)
||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++.+ |.|+|+|||+++.+.. ||+|++|++|+|+
T Consensus 159 LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~G~iv 238 (330)
T PRK15093 159 LTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCGQTV 238 (330)
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999998753 8999999999999965 9999999999999
Q ss_pred EecChhHHhcCCCchHHHHH
Q 001438 598 KTGSHEELISNPNSAYAALV 617 (1077)
Q Consensus 598 ~~g~~~~l~~~~~~~~~~~~ 617 (1077)
+.|+.+++.+++...|.+.+
T Consensus 239 e~g~~~~i~~~p~~~y~~~l 258 (330)
T PRK15093 239 ETAPSKELVTTPHHPYTQAL 258 (330)
T ss_pred EECCHHHHHhCCCCHHHHHH
Confidence 99999999887777776543
No 239
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=1.4e-39 Score=346.92 Aligned_cols=232 Identities=31% Similarity=0.513 Sum_probs=186.2
Q ss_pred cEEEEeEEEEcCCC-CCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCC-----CccEEEECCeeCCCCCHH
Q 001438 381 HIEFKDVSFCYPSR-PDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEP-----LSGEILLDGNNIKGLDLK 454 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~-~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~-----~~G~i~~~g~~~~~~~~~ 454 (1077)
-++++|++..|... ....++++|||+|++||++|+||+||||||-..+.++|+++- .+|+|.++|.|+-..+..
T Consensus 6 lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~ 85 (534)
T COG4172 6 LLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASER 85 (534)
T ss_pred ceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHH
Confidence 47889988888532 245689999999999999999999999999999999999864 479999999999988888
Q ss_pred HHhh----heeEEccCCCc-cc-c-cH----HHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCCh
Q 001438 455 WLRQ----QIGLVNQEPAL-FA-T-TI----RENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSG 523 (1077)
Q Consensus 455 ~~r~----~i~~v~Q~~~l-f~-~-ti----~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSg 523 (1077)
.+|+ +|+.++|||.- .| - || .|-|.+...-...+.-.++ .++++.+ .+|+- ...+...+.+|||
T Consensus 86 ~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~---lelL~~V-gI~~p-~~rl~~yPHeLSG 160 (534)
T COG4172 86 QLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARA---LELLELV-GIPEP-EKRLDAYPHELSG 160 (534)
T ss_pred HHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHH---HHHHHHc-CCCch-hhhhhhCCcccCc
Confidence 8774 79999999952 22 1 44 4444443321111111122 2222322 34432 3456678889999
Q ss_pred HHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEccCchhHhh-cCEEEEEECCEEEEec
Q 001438 524 GQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTG 600 (1077)
Q Consensus 524 Gqkqri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g 600 (1077)
|||||+.||.||+.+|++||-||||.|||...+.+|.+.|+++. .|..+++|||++..++. ||||+||.+|+++|.|
T Consensus 161 GqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~ivE~~ 240 (534)
T COG4172 161 GQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIVETG 240 (534)
T ss_pred chhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEEeecC
Confidence 99999999999999999999999999999999999999999874 48999999999999987 9999999999999999
Q ss_pred ChhHHhcCCCchHHHHH
Q 001438 601 SHEELISNPNSAYAALV 617 (1077)
Q Consensus 601 ~~~~l~~~~~~~~~~~~ 617 (1077)
+.+++..++...|.+..
T Consensus 241 ~t~~lF~~PqHpYTr~L 257 (534)
T COG4172 241 TTETLFAAPQHPYTRKL 257 (534)
T ss_pred cHHHHhhCCCChHHHHH
Confidence 99999998888877543
No 240
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.7e-40 Score=361.21 Aligned_cols=217 Identities=26% Similarity=0.429 Sum_probs=182.8
Q ss_pred ccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhh
Q 001438 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQ 459 (1077)
Q Consensus 380 ~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~ 459 (1077)
..|+++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...+++.
T Consensus 6 ~~l~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (265)
T PRK10253 6 ARLRGEQLTLGYGK---YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARR 82 (265)
T ss_pred cEEEEEEEEEEECC---EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhh
Confidence 46999999999974 358999999999999999999999999999999999999999999999999988887788889
Q ss_pred eeEEccCCCccc-ccHHHHHhcCC-CC------CCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHH
Q 001438 460 IGLVNQEPALFA-TTIRENILYGK-DD------ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAI 531 (1077)
Q Consensus 460 i~~v~Q~~~lf~-~ti~~ni~~~~-~~------~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~l 531 (1077)
++|+||++.+|. .|++||+.++. +. .......++ ..+ ++.+ |++......+.+||||||||++|
T Consensus 83 i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~---l~~~--~l~~~~~~~~~~LS~Gq~qrv~l 154 (265)
T PRK10253 83 IGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAV---TKA---MQAT--GITHLADQSVDTLSGGQRQRAWI 154 (265)
T ss_pred eEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHH---HHH---HHHc--CCHHHhcCCcccCChHHHHHHHH
Confidence 999999998875 59999998753 11 011111111 111 2111 33334556778999999999999
Q ss_pred HHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHhc
Q 001438 532 SRAIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELIS 607 (1077)
Q Consensus 532 ARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 607 (1077)
|||++.+|+++||||||++||+.+.+.+.+.|+++. .++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 155 aral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 233 (265)
T PRK10253 155 AMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIVT 233 (265)
T ss_pred HHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhh
Confidence 999999999999999999999999999999998874 37899999999998755 99999999999999999998764
No 241
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=100.00 E-value=2.6e-40 Score=354.26 Aligned_cols=211 Identities=28% Similarity=0.479 Sum_probs=178.6
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhe
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 460 (1077)
.|+++|+++.|++ .++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.+
T Consensus 7 ~i~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 83 (225)
T PRK10247 7 LLQLQNVGYLAGD---AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQV 83 (225)
T ss_pred eEEEeccEEeeCC---ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhcc
Confidence 5899999999963 3589999999999999999999999999999999999999999999999999888877788899
Q ss_pred eEEccCCCcccccHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHhcCccch-hhhhcCCCCCCChHHHHHHHHHHHhcc
Q 001438 461 GLVNQEPALFATTIRENILYGKD--DATMEEITRAAKLSEAMSFISNLPERF-ETQVGERGIQLSGGQKQRIAISRAIVK 537 (1077)
Q Consensus 461 ~~v~Q~~~lf~~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~-~t~~~~~g~~LSgGqkqri~lARal~~ 537 (1077)
+|++|++.+|+.|++||+.++.. ....++ .+.. +.++.+ |+ ++.....+.+||||||||++||||++.
T Consensus 84 ~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~----~~~~---~~l~~~--~l~~~~~~~~~~~LS~G~~qrv~laral~~ 154 (225)
T PRK10247 84 SYCAQTPTLFGDTVYDNLIFPWQIRNQQPDP----AIFL---DDLERF--ALPDTILTKNIAELSGGEKQRISLIRNLQF 154 (225)
T ss_pred EEEecccccccccHHHHHHhHHhhcCCChHH----HHHH---HHHHHc--CCChHHhcCCcccCCHHHHHHHHHHHHHhc
Confidence 99999999998999999986421 111111 1111 222223 23 234567788999999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEccCchhHhhcCEEEEEE-CCEEEEecChh
Q 001438 538 NPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRNADVIAVVQ-GRKIVKTGSHE 603 (1077)
Q Consensus 538 ~p~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~~~~d~i~~l~-~G~i~~~g~~~ 603 (1077)
+|+++||||||++||+.+.+.+.+.|+++. .++|+|++||+++.++.||++++|+ ++..+++|+|+
T Consensus 155 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~~~~~~~~~~~~~ 223 (225)
T PRK10247 155 MPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGEMQEARYE 223 (225)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHhCCEEEEEecccchHhhhhhc
Confidence 999999999999999999999999999874 3789999999999998899999994 67778888875
No 242
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.9e-40 Score=360.16 Aligned_cols=225 Identities=28% Similarity=0.472 Sum_probs=186.7
Q ss_pred cccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCC-----CccEEEECCeeCCC---
Q 001438 379 SGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEP-----LSGEILLDGNNIKG--- 450 (1077)
Q Consensus 379 ~~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~-----~~G~i~~~g~~~~~--- 450 (1077)
.+.|+++|++++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+.+| ++|+|.++|.++..
T Consensus 14 ~~~l~~~~l~~~~~~---~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~ 90 (265)
T PRK14252 14 QQKSEVNKLNFYYGG---YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSP 90 (265)
T ss_pred CceEEEEEEEEEECC---eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCcccccccc
Confidence 467999999999974 3599999999999999999999999999999999999875 79999999988742
Q ss_pred -CCHHHHhhheeEEccCCCcccccHHHHHhcCCC--CCCH-----HHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCC
Q 001438 451 -LDLKWLRQQIGLVNQEPALFATTIRENILYGKD--DATM-----EEITRAAKLSEAMSFISNLPERFETQVGERGIQLS 522 (1077)
Q Consensus 451 -~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~--~~~~-----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LS 522 (1077)
.....+++.++|++|++.+|++|++||+.++.. .... +++..+++.. .+.+++.+..+....+||
T Consensus 91 ~~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~-------~l~~~l~~~~~~~~~~LS 163 (265)
T PRK14252 91 EVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNA-------ALWDEVKDRLGDLAFNLS 163 (265)
T ss_pred ccCHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHc-------CCchhhhHHHhCCcccCC
Confidence 334567888999999999999999999987531 1111 1222222221 222244455677788999
Q ss_pred hHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHh-hcCEEEEEECCEEEEecC
Q 001438 523 GGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIR-NADVIAVVQGRKIVKTGS 601 (1077)
Q Consensus 523 gGqkqri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~-~~d~i~~l~~G~i~~~g~ 601 (1077)
||||||++||||++.+|+++||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+. .||++++|++|++++.|+
T Consensus 164 ~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~g~ 243 (265)
T PRK14252 164 GGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGELIEFGA 243 (265)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 9999999999999999999999999999999999999999998877799999999999986 499999999999999999
Q ss_pred hhHHhcCCCchH
Q 001438 602 HEELISNPNSAY 613 (1077)
Q Consensus 602 ~~~l~~~~~~~~ 613 (1077)
++++..++...|
T Consensus 244 ~~~~~~~~~~~~ 255 (265)
T PRK14252 244 TDTIFIKPKNKQ 255 (265)
T ss_pred HHHHHhCCCCHH
Confidence 999876543333
No 243
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.6e-40 Score=360.32 Aligned_cols=222 Identities=32% Similarity=0.535 Sum_probs=181.1
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCC-----CccEEEECCeeCCC--CCH
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEP-----LSGEILLDGNNIKG--LDL 453 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~-----~~G~i~~~g~~~~~--~~~ 453 (1077)
.++++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++.. .+.
T Consensus 4 ~l~i~~v~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~ 80 (258)
T PRK14241 4 RIDVKDLNIYYGS---FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDP 80 (258)
T ss_pred cEEEeeEEEEECC---EeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccCh
Confidence 4899999999974 3589999999999999999999999999999999999974 69999999999853 345
Q ss_pred HHHhhheeEEccCCCcccc-cHHHHHhcCCCC---CCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHH
Q 001438 454 KWLRQQIGLVNQEPALFAT-TIRENILYGKDD---ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRI 529 (1077)
Q Consensus 454 ~~~r~~i~~v~Q~~~lf~~-ti~~ni~~~~~~---~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri 529 (1077)
..+|+.++|++|++.+|+. |++||+.++... ...++..+. ...+.+.+ .+.++..........+||||||||+
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~--~~~~l~~~-~l~~~~~~~~~~~~~~LS~G~~qrv 157 (258)
T PRK14241 81 VAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDEL--VEKSLRGA-NLWNEVKDRLDKPGGGLSGGQQQRL 157 (258)
T ss_pred HHHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHH--HHHHHHHc-CCchhhhhHhhCCcccCCHHHHHHH
Confidence 5678889999999999875 999999865311 111111111 11111111 1221223345667789999999999
Q ss_pred HHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHh-hcCEEEEEE------CCEEEEecCh
Q 001438 530 AISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIR-NADVIAVVQ------GRKIVKTGSH 602 (1077)
Q Consensus 530 ~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~-~~d~i~~l~------~G~i~~~g~~ 602 (1077)
+||||++.+|+++||||||++||+.+...+.+.|+++.+++|+|++||+++.+. .||+|++|+ +|+|++.|++
T Consensus 158 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~~~~~ 237 (258)
T PRK14241 158 CIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVEIDDT 237 (258)
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEEecCCH
Confidence 999999999999999999999999999999999998877799999999999986 599999997 8999999999
Q ss_pred hHHhcC
Q 001438 603 EELISN 608 (1077)
Q Consensus 603 ~~l~~~ 608 (1077)
+++...
T Consensus 238 ~~~~~~ 243 (258)
T PRK14241 238 EKIFSN 243 (258)
T ss_pred HHHHhC
Confidence 998764
No 244
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=100.00 E-value=2.3e-40 Score=352.86 Aligned_cols=205 Identities=34% Similarity=0.553 Sum_probs=167.9
Q ss_pred EEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHH---HHhh
Q 001438 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLK---WLRQ 458 (1077)
Q Consensus 382 i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~---~~r~ 458 (1077)
++++|++++|++ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++..++.. .+++
T Consensus 2 l~~~~l~~~~~~--~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (214)
T TIGR02673 2 IEFHNVSKAYPG--GVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRR 79 (214)
T ss_pred EEEEeeeEEeCC--CceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHh
Confidence 689999999952 23689999999999999999999999999999999999999999999999999876543 4677
Q ss_pred heeEEccCCCccc-ccHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHh
Q 001438 459 QIGLVNQEPALFA-TTIRENILYGKDD--ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAI 535 (1077)
Q Consensus 459 ~i~~v~Q~~~lf~-~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal 535 (1077)
.++|++|+|.+|. .|++||+.++... ...++..+ +.... ++.+ |+.........+||||||||++||||+
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~--~~~~~---l~~~--~l~~~~~~~~~~LS~G~~qrl~la~al 152 (214)
T TIGR02673 80 RIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQR--RVGAA---LRQV--GLEHKADAFPEQLSGGEQQRVAIARAI 152 (214)
T ss_pred heEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHH--HHHHH---HHHc--CChhhhhCChhhCCHHHHHHHHHHHHH
Confidence 8999999999986 5999999875311 11111111 11111 2111 222223445568999999999999999
Q ss_pred ccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHhh-cCEEEEEECCE
Q 001438 536 VKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRK 595 (1077)
Q Consensus 536 ~~~p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~-~d~i~~l~~G~ 595 (1077)
+.+|+++||||||++||+.++..+.+.|+++. +++|+|++||+++.+.. ||++++|++|+
T Consensus 153 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 153 VNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred hCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 99999999999999999999999999998874 58999999999999876 99999999985
No 245
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=100.00 E-value=2.3e-37 Score=379.06 Aligned_cols=385 Identities=20% Similarity=0.302 Sum_probs=332.4
Q ss_pred HHhhcccchHHHHHHHHHHHHHhhHHhHHHHHHHHHHHhhccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 687 LYSMVRPDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYYMDWDTTQREVKKITILFCCAAVITVIVHAIEHLSFGIMG 766 (1077)
Q Consensus 687 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 766 (1077)
++.+.+++++++..+.+++++.++..+..++.+..+++..+... .......+...++++.++..++.+++.+.....+
T Consensus 5 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 82 (571)
T TIGR02203 5 LWSYVRPYKAGLVLAGVAMILVAATESTLAALLKPLLDDGFGGR--DRSVLWWVPLVVIGLAVLRGICSFVSTYLLSWVS 82 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC--chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666777777777778877777777887777776544311 1112222344566677777888889999999999
Q ss_pred HHHHHHHHHHHHHHHHcCCccccccccCCchhHHHHHhhcHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 001438 767 ERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQNFGLVTASFVIAFILNWRITLVV 846 (1077)
Q Consensus 767 ~~~~~~Lr~~l~~~llr~p~~FFD~~~~~~G~IlnR~s~D~~~i~~~l~~~l~~~~~~~~~~~~~i~i~~~~~w~l~l~~ 846 (1077)
.++...+|..+|+++++.|.++|++ .++|++++|+++|++.+++.+...+..++..++.+++.++++++++|.+++++
T Consensus 83 ~~~~~~lr~~l~~~~~~~~~~~~~~--~~~g~~~~~l~~di~~i~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~l~~i~ 160 (571)
T TIGR02203 83 NKVVRDIRVRMFEKLLGLPVSFFDR--QPTGTLLSRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQLTLIV 160 (571)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHhCC--CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 9999999999999999999999995 88999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHcchHHHHHhcchHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 001438 847 VATYPLIISGHISEKLFFQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRSFIRGQIAGIF 926 (1077)
Q Consensus 847 l~~~Pl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Etl~Gi~tIrAf~~e~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 926 (1077)
+++.|+.++...+..+..++...+..+...+..+.+.|+++|+++||+++.|+++.++|.+..++..+...+.....+..
T Consensus 161 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (571)
T TIGR02203 161 VVMLPVLSILMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAGSIS 240 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999888888888888888888888888899999999999999999999999999999999999888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHcCCCCccCC
Q 001438 927 YGISQFFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLALVPDLLKGNQMAASVFEVLDRKTQVIGD 1006 (1077)
Q Consensus 927 ~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~ 1006 (1077)
..+...+..+...+++++|+.++..|.++++.++++..+......|+..+......++.+..+.+|+.++++.+++.+..
T Consensus 241 ~~~~~~~~~~~~~~~~~~g~~~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~ 320 (571)
T TIGR02203 241 SPITQLIASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDTG 320 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCC
Confidence 88888888888899999999999999999999999999999999999999999999999999999999999876553322
Q ss_pred CCcccccccccEEEeeeeeeCCCCCcccccccceeeeeCCCEEEEECCCCCCHHHHHHHHhhccCCCCCCC
Q 001438 1007 IGEELTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKA 1077 (1077)
Q Consensus 1007 ~~~~~~~~~G~I~f~nVsf~Y~~~~~~~VLk~vsl~I~~GekVaIVGrTGsGKSTLi~lL~Rfyd~~~G~i 1077 (1077)
. ....+..|+|+|+||+|+|+++ +.++|+|+||+|+|||+|||||+||||||||+++|.|+|+|++|+|
T Consensus 321 ~-~~~~~~~~~i~~~~v~f~y~~~-~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I 389 (571)
T TIGR02203 321 T-RAIERARGDVEFRNVTFRYPGR-DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQI 389 (571)
T ss_pred C-CCCCCCCCeEEEEEEEEEcCCC-CCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeE
Confidence 1 1122346789999999999764 3468999999999999999999999999999999999999999986
No 246
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.6e-40 Score=359.60 Aligned_cols=221 Identities=32% Similarity=0.501 Sum_probs=182.7
Q ss_pred ccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCC-----CccEEEECCeeCCC--CC
Q 001438 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEP-----LSGEILLDGNNIKG--LD 452 (1077)
Q Consensus 380 ~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~-----~~G~i~~~g~~~~~--~~ 452 (1077)
+.++++|++++|++ .++|+|+||++++||+++|+|+||||||||+++|+|+++| ++|+|.++|+++.. .+
T Consensus 6 ~~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 82 (259)
T PRK14260 6 PAIKVKDLSFYYNT---SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRIN 82 (259)
T ss_pred ceEEEEEEEEEECC---eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccc
Confidence 36899999999963 3589999999999999999999999999999999999985 48999999999864 34
Q ss_pred HHHHhhheeEEccCCCcccccHHHHHhcCCCC---CCHHH----HHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHH
Q 001438 453 LKWLRQQIGLVNQEPALFATTIRENILYGKDD---ATMEE----ITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQ 525 (1077)
Q Consensus 453 ~~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~~---~~~~~----~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq 525 (1077)
...++++++|++|++.+|+.|++||+.++... ....+ +.++++..++ .+.........+..|||||
T Consensus 83 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l-------~~~l~~~~~~~~~~LS~G~ 155 (259)
T PRK14260 83 INRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAAL-------WQEVKDKLNKSALGLSGGQ 155 (259)
T ss_pred hHhhhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-------cchhhhHhcCCcccCCHHH
Confidence 46678899999999999999999999875311 11111 1122222211 1112233456778999999
Q ss_pred HHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhh-cCEEEEEE-----CCEEEEe
Q 001438 526 KQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQ-----GRKIVKT 599 (1077)
Q Consensus 526 kqri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~-~d~i~~l~-----~G~i~~~ 599 (1077)
|||++||||++++|+++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||++++|+ +|++++.
T Consensus 156 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~~ 235 (259)
T PRK14260 156 QQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEF 235 (259)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEEe
Confidence 99999999999999999999999999999999999999988777999999999999865 99999998 5999999
Q ss_pred cChhHHhcCCC
Q 001438 600 GSHEELISNPN 610 (1077)
Q Consensus 600 g~~~~l~~~~~ 610 (1077)
|+++++.+++.
T Consensus 236 ~~~~~~~~~~~ 246 (259)
T PRK14260 236 GVTTQIFSNPL 246 (259)
T ss_pred CCHHHHhcCCC
Confidence 99999876543
No 247
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=1.4e-38 Score=413.73 Aligned_cols=206 Identities=21% Similarity=0.343 Sum_probs=168.0
Q ss_pred cccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCC---ccEEEECCeeCCCCCHHHHhhheeEEccCCCcccc-
Q 001438 397 VAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPL---SGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFAT- 472 (1077)
Q Consensus 397 ~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~---~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~- 472 (1077)
+.+|+|+|+.++|||+++|+||||||||||+++|+|.++|+ +|+|.+||+++.+.. .|+.++||+|++.+++.
T Consensus 178 ~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~---~~~~i~yv~Q~d~~~~~l 254 (1470)
T PLN03140 178 LTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFV---PRKTSAYISQNDVHVGVM 254 (1470)
T ss_pred ceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhc---ccceeEEecccccCCCcC
Confidence 45899999999999999999999999999999999999998 999999999886553 26789999999988865
Q ss_pred cHHHHHhcCCC----C--------CCHHH----------H---HHHHH---------HHhHHHHHhcCccchhhhhcC-C
Q 001438 473 TIRENILYGKD----D--------ATMEE----------I---TRAAK---------LSEAMSFISNLPERFETQVGE-R 517 (1077)
Q Consensus 473 ti~~ni~~~~~----~--------~~~~~----------~---~~~~~---------~~~~~~~i~~l~~g~~t~~~~-~ 517 (1077)
||+||+.|+.. . .+.++ + .+++. .....+. -+|.+-.||.+|+ .
T Consensus 255 TV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~-lGL~~~~~t~vg~~~ 333 (1470)
T PLN03140 255 TVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKI-LGLDICKDTIVGDEM 333 (1470)
T ss_pred cHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHH-cCCccccCceeCCcc
Confidence 99999987521 0 00111 0 00100 1112222 2455566788875 4
Q ss_pred CCCCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEccCch-h-HhhcCEEEEEEC
Q 001438 518 GIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLS-T-IRNADVIAVVQG 593 (1077)
Q Consensus 518 g~~LSgGqkqri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~-~-~~~~d~i~~l~~ 593 (1077)
...||||||||++|||+++.+|++++|||||++||+.+...+.+.|+++. .|+|+|+++|+.. . ...+|+|++|++
T Consensus 334 ~rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~ 413 (1470)
T PLN03140 334 IRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSE 413 (1470)
T ss_pred ccCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeC
Confidence 56899999999999999999999999999999999999999999999874 4899999999974 4 456999999999
Q ss_pred CEEEEecChhHHh
Q 001438 594 RKIVKTGSHEELI 606 (1077)
Q Consensus 594 G~i~~~g~~~~l~ 606 (1077)
|+++..|+.+++.
T Consensus 414 G~ivy~G~~~~~~ 426 (1470)
T PLN03140 414 GQIVYQGPRDHIL 426 (1470)
T ss_pred ceEEEeCCHHHHH
Confidence 9999999999876
No 248
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.8e-40 Score=357.15 Aligned_cols=223 Identities=29% Similarity=0.516 Sum_probs=184.2
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccC-----CCccEEEECCeeCCCC--CH
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYE-----PLSGEILLDGNNIKGL--DL 453 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~-----~~~G~i~~~g~~~~~~--~~ 453 (1077)
.++++||++.|++ .++|+|+||+|++||+++|+||||||||||+++|+|+.+ |++|+|.+||+++... +.
T Consensus 3 ~l~~~~v~~~~~~---~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~ 79 (250)
T PRK14266 3 RIEVENLNTYFDD---AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDV 79 (250)
T ss_pred EEEEEeEEEEeCC---eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccH
Confidence 3789999999963 358999999999999999999999999999999999864 4899999999998653 35
Q ss_pred HHHhhheeEEccCCCcccccHHHHHhcCCCC--C-CHHHH----HHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHH
Q 001438 454 KWLRQQIGLVNQEPALFATTIRENILYGKDD--A-TMEEI----TRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQK 526 (1077)
Q Consensus 454 ~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~~--~-~~~~~----~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqk 526 (1077)
..+|++++|+||++.+|+.|++||+.++... . ..+.. .++++..++. +......+..+.+||||||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~l~~~~~~~~~~LS~Gq~ 152 (250)
T PRK14266 80 VELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALW-------DEVKDKLDKSALGLSGGQQ 152 (250)
T ss_pred HHHhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCc-------hhHHHHHhCCcccCCHHHH
Confidence 5678899999999999999999999875321 1 11212 2222222221 1122234566789999999
Q ss_pred HHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHH
Q 001438 527 QRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEEL 605 (1077)
Q Consensus 527 qri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 605 (1077)
||++||||++++|+++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 153 qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14266 153 QRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQI 232 (250)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHHHhhcCEEEEEECCeEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988778999999999998866 999999999999999999999
Q ss_pred hcCCCchH
Q 001438 606 ISNPNSAY 613 (1077)
Q Consensus 606 ~~~~~~~~ 613 (1077)
...+...+
T Consensus 233 ~~~~~~~~ 240 (250)
T PRK14266 233 FINPKDKR 240 (250)
T ss_pred HhCCCChH
Confidence 76544443
No 249
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=5.1e-40 Score=350.89 Aligned_cols=210 Identities=30% Similarity=0.454 Sum_probs=181.7
Q ss_pred EEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCH----HHHhh
Q 001438 383 EFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDL----KWLRQ 458 (1077)
Q Consensus 383 ~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~----~~~r~ 458 (1077)
.+.|++|+|+.. .++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+. ...|+
T Consensus 2 ~~~~~~~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (218)
T cd03290 2 QVTNGYFSWGSG--LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRY 79 (218)
T ss_pred eeeeeEEecCCC--CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcc
Confidence 467999999744 468999999999999999999999999999999999999999999999998876542 23567
Q ss_pred heeEEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccC
Q 001438 459 QIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKN 538 (1077)
Q Consensus 459 ~i~~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~ 538 (1077)
.++|++|+|.+|+.|++||+.++.+ ...++..++++..++.+.++.+|.|+++.++....+||||||||++||||++.+
T Consensus 80 ~i~~~~q~~~~~~~t~~~nl~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~ 158 (218)
T cd03290 80 SVAYAAQKPWLLNATVEENITFGSP-FNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQN 158 (218)
T ss_pred eEEEEcCCCccccccHHHHHhhcCc-CCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhC
Confidence 7999999999998899999998653 234444556666666666777899999999989999999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHH--HHHHHh-CCCeEEEEccCchhHhhcCEEEEEECCE
Q 001438 539 PSILLLDEATSALDAESENSVQE--ALDRVM-VGRTTVVVAHRLSTIRNADVIAVVQGRK 595 (1077)
Q Consensus 539 p~illlDEpts~lD~~~~~~i~~--~l~~~~-~~~t~i~vtH~~~~~~~~d~i~~l~~G~ 595 (1077)
|+++||||||++||+.+.+.+.+ .++.+. +++|+|++||+.+.+..||++++|++|+
T Consensus 159 p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~G~ 218 (218)
T cd03290 159 TNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDGS 218 (218)
T ss_pred CCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCCEEEEecCCC
Confidence 99999999999999999998887 455443 4789999999999998899999999984
No 250
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2e-40 Score=352.05 Aligned_cols=205 Identities=25% Similarity=0.483 Sum_probs=170.5
Q ss_pred EEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhee
Q 001438 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (1077)
Q Consensus 382 i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 461 (1077)
++++|+++.|++ .++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. ..+++++
T Consensus 1 l~~~~l~~~~~~---~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~----~~~~~i~ 73 (210)
T cd03269 1 LEVENVTKRFGR---VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI----AARNRIG 73 (210)
T ss_pred CEEEEEEEEECC---EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH----HHHccEE
Confidence 478999999963 358999999999999999999999999999999999999999999999987753 4567899
Q ss_pred EEccCCCcccc-cHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccC
Q 001438 462 LVNQEPALFAT-TIRENILYGKD--DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKN 538 (1077)
Q Consensus 462 ~v~Q~~~lf~~-ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~ 538 (1077)
|++|++.++++ |++||+.++.. .....+..+ .+.+.++.+ |++........+||||||||++||||++.+
T Consensus 74 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~al~~~ 146 (210)
T cd03269 74 YLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARR-----RIDEWLERL--ELSEYANKRVEELSKGNQQKVQFIAAVIHD 146 (210)
T ss_pred EeccCCcCCcCCcHHHHHHHHHHHcCCChHHHHH-----HHHHHHHHc--CChHHHhCcHhhCCHHHHHHHHHHHHHhcC
Confidence 99999999876 99999986431 111111111 112223333 344455566789999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHhh-cCEEEEEECCEEEEec
Q 001438 539 PSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTG 600 (1077)
Q Consensus 539 p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g 600 (1077)
|+++||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 147 p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 147 PELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence 99999999999999999999999998864 57899999999998865 9999999999998764
No 251
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=100.00 E-value=6e-40 Score=353.03 Aligned_cols=212 Identities=25% Similarity=0.382 Sum_probs=173.0
Q ss_pred cEEEEeEEEEcCCCCC-cccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHH---H
Q 001438 381 HIEFKDVSFCYPSRPD-VAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKW---L 456 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~-~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~---~ 456 (1077)
.|+++|++++|++... .++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+... .
T Consensus 6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 85 (228)
T PRK10584 6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKL 85 (228)
T ss_pred eEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHH
Confidence 5899999999974321 25899999999999999999999999999999999999999999999999998776543 2
Q ss_pred -hhheeEEccCCCcccc-cHHHHHhcCC--CCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHH
Q 001438 457 -RQQIGLVNQEPALFAT-TIRENILYGK--DDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAIS 532 (1077)
Q Consensus 457 -r~~i~~v~Q~~~lf~~-ti~~ni~~~~--~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lA 532 (1077)
++.++|++|++.+++. |++||+.++. .....++..+ +. .+.++.+ |+.........+||||||||++||
T Consensus 86 ~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~--~~---~~~l~~~--~l~~~~~~~~~~LS~Ge~qrl~la 158 (228)
T PRK10584 86 RAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRN--GA---KALLEQL--GLGKRLDHLPAQLSGGEQQRVALA 158 (228)
T ss_pred HhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHH--HH---HHHHHHc--CCHhHhhCChhhCCHHHHHHHHHH
Confidence 3579999999999875 9999998642 1111111111 11 1112222 233334456678999999999999
Q ss_pred HHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEccCchhHhhcCEEEEEECCEEEEe
Q 001438 533 RAIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRNADVIAVVQGRKIVKT 599 (1077)
Q Consensus 533 Ral~~~p~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~~~~d~i~~l~~G~i~~~ 599 (1077)
|||+.+|+++||||||++||+.+.+.+.+.|+++. .++|+|++||+++.+..||++++|++|++++.
T Consensus 159 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~g~i~~~ 227 (228)
T PRK10584 159 RAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQEE 227 (228)
T ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEec
Confidence 99999999999999999999999999999998874 37899999999999888999999999999864
No 252
>PRK10908 cell division protein FtsE; Provisional
Probab=100.00 E-value=5e-40 Score=351.98 Aligned_cols=208 Identities=29% Similarity=0.474 Sum_probs=171.4
Q ss_pred EEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHH---HHhh
Q 001438 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLK---WLRQ 458 (1077)
Q Consensus 382 i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~---~~r~ 458 (1077)
|+++|++++|++. .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. .+|+
T Consensus 2 l~~~~l~~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 79 (222)
T PRK10908 2 IRFEHVSKAYLGG--RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRR 79 (222)
T ss_pred EEEEeeEEEecCC--CeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHh
Confidence 7899999999522 3589999999999999999999999999999999999999999999999999876543 3678
Q ss_pred heeEEccCCCcc-cccHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHh
Q 001438 459 QIGLVNQEPALF-ATTIRENILYGKD--DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAI 535 (1077)
Q Consensus 459 ~i~~v~Q~~~lf-~~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal 535 (1077)
.++|++|+|.++ +.|++||+.++.. ..+.++..+.+ ....+. + |+.........+||||||||++||||+
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~--~~~l~~---~--~l~~~~~~~~~~LS~G~~qrv~laral 152 (222)
T PRK10908 80 QIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRV--SAALDK---V--GLLDKAKNFPIQLSGGEQQRVGIARAV 152 (222)
T ss_pred heEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHH--HHHHHH---c--CChhhhhCCchhCCHHHHHHHHHHHHH
Confidence 899999999875 5699999987531 12232222211 112221 1 222334556679999999999999999
Q ss_pred ccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHhh-cCEEEEEECCEEEE
Q 001438 536 VKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVK 598 (1077)
Q Consensus 536 ~~~p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~ 598 (1077)
+.+|++|||||||++||+.+.+.+.+.|+++. ++.|+|++||+++.+.. ||+|++|++|+++.
T Consensus 153 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 217 (222)
T PRK10908 153 VNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLHG 217 (222)
T ss_pred HcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEcc
Confidence 99999999999999999999999999998874 47899999999999876 99999999999863
No 253
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=100.00 E-value=6.9e-40 Score=358.93 Aligned_cols=226 Identities=23% Similarity=0.418 Sum_probs=183.7
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCee-----CCCCCHHH
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNN-----IKGLDLKW 455 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~-----~~~~~~~~ 455 (1077)
.++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|++ +.+.+...
T Consensus 6 ~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~ 82 (258)
T PRK11701 6 LLSVRGLTKLYGP---RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAE 82 (258)
T ss_pred eEEEeeeEEEcCC---ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHH
Confidence 5899999999974 358999999999999999999999999999999999999999999999998 77666544
Q ss_pred ----HhhheeEEccCCC--ccc-ccHHHHHhcCC---CCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHH
Q 001438 456 ----LRQQIGLVNQEPA--LFA-TTIRENILYGK---DDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQ 525 (1077)
Q Consensus 456 ----~r~~i~~v~Q~~~--lf~-~ti~~ni~~~~---~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq 525 (1077)
.++.++|++|++. ++. .|+.||+.+.. ......+... ...+.++.++-+ ++..+..+.+|||||
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~-~~~~~~~~~~LS~Gq 156 (258)
T PRK11701 83 RRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRA-----TAGDWLERVEID-AARIDDLPTTFSGGM 156 (258)
T ss_pred HHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHH-----HHHHHHHHcCCC-hhHHhCCCccCCHHH
Confidence 3557999999984 443 48899986431 1111222211 122334444321 235677888999999
Q ss_pred HHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEccCchhHhh-cCEEEEEECCEEEEecCh
Q 001438 526 KQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSH 602 (1077)
Q Consensus 526 kqri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~ 602 (1077)
|||++||||++.+|+++||||||++||+.+.+.+.+.|+++.+ +.|+|++||+++.+.. ||+|++|++|++++.|++
T Consensus 157 ~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~~~~~ 236 (258)
T PRK11701 157 QQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESGLT 236 (258)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999988643 7899999999999974 999999999999999999
Q ss_pred hHHhcCCCchHHH
Q 001438 603 EELISNPNSAYAA 615 (1077)
Q Consensus 603 ~~l~~~~~~~~~~ 615 (1077)
+++..++...|.+
T Consensus 237 ~~~~~~~~~~~~~ 249 (258)
T PRK11701 237 DQVLDDPQHPYTQ 249 (258)
T ss_pred HHHhcCCCCHHHH
Confidence 9998664444543
No 254
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.8e-40 Score=372.89 Aligned_cols=212 Identities=30% Similarity=0.475 Sum_probs=178.7
Q ss_pred EEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCC----CHHHHh
Q 001438 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGL----DLKWLR 457 (1077)
Q Consensus 382 i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~----~~~~~r 457 (1077)
|++ |++++|++ . .+ |+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++... +....+
T Consensus 2 l~~-~l~k~~~~---~-~~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~ 75 (352)
T PRK11144 2 LEL-NFKQQLGD---L-CL-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEK 75 (352)
T ss_pred eEE-EEEEEeCC---E-EE-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhh
Confidence 567 89999963 2 23 89999999999999999999999999999999999999999999998653 234567
Q ss_pred hheeEEccCCCcccc-cHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhc
Q 001438 458 QQIGLVNQEPALFAT-TIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIV 536 (1077)
Q Consensus 458 ~~i~~v~Q~~~lf~~-ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~ 536 (1077)
++++|++|++.+|+. |++||+.++......+++.+.++. + |++.....+..+||||||||++|||||+
T Consensus 76 ~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~---------~--gl~~~~~~~~~~LSgGq~qRvalaraL~ 144 (352)
T PRK11144 76 RRIGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVAL---------L--GIEPLLDRYPGSLSGGEKQRVAIGRALL 144 (352)
T ss_pred CCEEEEcCCcccCCCCcHHHHHHhhhhhhhHHHHHHHHHH---------c--CCchhhhCCcccCCHHHHHHHHHHHHHH
Confidence 789999999999975 999999987543222222222222 2 3334455667899999999999999999
Q ss_pred cCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHhcCCC
Q 001438 537 KNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISNPN 610 (1077)
Q Consensus 537 ~~p~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~ 610 (1077)
.+|+++||||||++||+.+++.+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++..++.
T Consensus 145 ~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~~~p~ 221 (352)
T PRK11144 145 TAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWASSA 221 (352)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHHHhCcc
Confidence 99999999999999999999999999988753 7899999999998765 99999999999999999999988754
No 255
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=100.00 E-value=2.9e-37 Score=375.91 Aligned_cols=384 Identities=17% Similarity=0.191 Sum_probs=310.7
Q ss_pred HHHHhhcccchHHHHHHHHHHHHHhhHHhHHHHHHHHHHHhhccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 685 IKLYSMVRPDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYYMDWDTTQREVKKITILFCCAAVITVIVHAIEHLSFGI 764 (1077)
Q Consensus 685 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 764 (1077)
++++++.+++++.+..+++++++..+..+..++.++.+++..+.... ...+..+++++.++..+..++.......
T Consensus 8 ~~l~~~l~~~k~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (585)
T TIGR01192 8 VRALSYLNVHKNRVLLIVIANITLAAITIAEPILFGRIIDAISSKSD-----VLPTLALWAGFGVFNTIAYVLVAREADR 82 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667778888887778888888888888888888888876543211 1111222222333333444444444455
Q ss_pred HHHHHHHHHHHHHHHHHHcCCccccccccCCchhHHHHHhhcHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 001438 765 MGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQNFGLVTASFVIAFILNWRITL 844 (1077)
Q Consensus 765 ~~~~~~~~Lr~~l~~~llr~p~~FFD~~~~~~G~IlnR~s~D~~~i~~~l~~~l~~~~~~~~~~~~~i~i~~~~~w~l~l 844 (1077)
...++..++|.++|++++++|++||++ +++|++++|+++|++.+...+...+..++..++.+++.+++++.++|++++
T Consensus 83 ~~~~~~~~lr~~~~~~l~~l~~~~~~~--~~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l 160 (585)
T TIGR01192 83 LAHGRRATLLTEAFGRIISMPLSWHQQ--RGTSNALHTLLRATETLFGLWLEFMRQHLATFVALFLLIPTAFAMDWRLSI 160 (585)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHhCC--CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555566667779999999999999995 889999999999999999998888888888888888888889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHcchHHHHHhcchHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 001438 845 VVVATYPLIISGHISEKLFFQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRSFIRGQIAG 924 (1077)
Q Consensus 845 ~~l~~~Pl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Etl~Gi~tIrAf~~e~~~~~~f~~~~~~~~~~~~~~~~~~~ 924 (1077)
++++++|+.++......+..++.....++...+..+.+.|+++|++|||+|+.|+++.++|.+..++..+...+.....+
T Consensus 161 i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (585)
T TIGR01192 161 VLMVLGILYILIAKLVMQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPVLDWWA 240 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998888777777777766667777788888899999999999999999999999999998888777777666677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHcCCCCcc
Q 001438 925 IFYGISQFFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLALVPDLLKGNQMAASVFEVLDRKTQVI 1004 (1077)
Q Consensus 925 ~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~ 1004 (1077)
....+...+......+++++|+.++..|.++++.++++..+......++..+......+..+..+.+|+.++++.+++..
T Consensus 241 ~~~~~~~~~~~~~~~~v~~~g~~~v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~ 320 (585)
T TIGR01192 241 LASGLNRMASTISMMCILVIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQRE 320 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccc
Confidence 77777777777778888999999999999999999999888888888999999999999999999999999998765432
Q ss_pred CC-CCcccccccccEEEeeeeeeCCCCCcccccccceeeeeCCCEEEEECCCCCCHHHHHHHHhhccCCCCCCC
Q 001438 1005 GD-IGEELTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKA 1077 (1077)
Q Consensus 1005 ~~-~~~~~~~~~G~I~f~nVsf~Y~~~~~~~VLk~vsl~I~~GekVaIVGrTGsGKSTLi~lL~Rfyd~~~G~i 1077 (1077)
.. .+...++.+|.|+|+||+|+|+++ .++|+|+||+|++||++|||||||||||||+++|.|+|+|++|+|
T Consensus 321 ~~~~~~~~~~~~~~i~~~~v~~~y~~~--~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i 392 (585)
T TIGR01192 321 EPADAPELPNVKGAVEFRHITFEFANS--SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQI 392 (585)
T ss_pred CCccCCCCCCCCCeEEEEEEEEECCCC--CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEE
Confidence 21 111122345789999999999753 247999999999999999999999999999999999999999975
No 256
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=2.8e-37 Score=378.77 Aligned_cols=384 Identities=19% Similarity=0.247 Sum_probs=303.4
Q ss_pred HHHhhcccchHHHHHHHHHHHHHhhHHhHHHHHHHHHHHhhccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 686 KLYSMVRPDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYYMDWDTTQREVKKITILFCCAAVITVIVHAIEHLSFGIM 765 (1077)
Q Consensus 686 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 765 (1077)
+++.+.+++++++....++.++.....+..++.+..+++..+............+.++++++.++..++.+.+.+.+...
T Consensus 13 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (592)
T PRK10790 13 RLLAYGSPWRKPLGLAVLMLWVAAAAEVSGPLLISYFIDNMVAKGNLPLGLVAGLAAAYVGLQLLAAGLHYAQSLLFNRA 92 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666677676677777777777777888888888765432211010111122334445556667788888899999
Q ss_pred HHHHHHHHHHHHHHHHHcCCccccccccCCchhHHHHHhhcHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 001438 766 GERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQNFGLVTASFVIAFILNWRITLV 845 (1077)
Q Consensus 766 ~~~~~~~Lr~~l~~~llr~p~~FFD~~~~~~G~IlnR~s~D~~~i~~~l~~~l~~~~~~~~~~~~~i~i~~~~~w~l~l~ 845 (1077)
+.+...++|.++|+++++.|.+||+. +++|++++|+++|++.+++.+...+..++..+..+++.++++++++|.++++
T Consensus 93 ~~~~~~~lr~~l~~~l~~~~~~~~~~--~~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li 170 (592)
T PRK10790 93 AVGVVQQLRTDVMDAALRQPLSAFDT--QPVGQLISRVTNDTEVIRDLYVTVVATVLRSAALIGAMLVAMFSLDWRMALV 170 (592)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHhCC--CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999995 8999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHcchHHHHHhcchHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 001438 846 VVATYPLIISGHISEKLFFQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRSFIRGQIAGI 925 (1077)
Q Consensus 846 ~l~~~Pl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Etl~Gi~tIrAf~~e~~~~~~f~~~~~~~~~~~~~~~~~~~~ 925 (1077)
++..+|+.++...+..+..+...++.++...+....+.|+++|+++||+|+.|+++.++|.+..++..+...+.....+.
T Consensus 171 ~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (592)
T PRK10790 171 AIMIFPAVLVVMVIYQRYSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSHYMARMQTLRLDGF 250 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98888888777666666666666777777788888899999999999999999999999998888777776665555444
Q ss_pred H-HHHHHHHHHHH-HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHcCCCCc
Q 001438 926 F-YGISQFFIFSS-YGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLALVPDLLKGNQMAASVFEVLDRKTQV 1003 (1077)
Q Consensus 926 ~-~~~~~~~~~~~-~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~ 1003 (1077)
. .++...+.... .++.+++| . +..|.++++.++++..+......|+..+......++++..+++|+.++++.+++.
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~-~-~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~ 328 (592)
T PRK10790 251 LLRPLLSLFSALILCGLLMLFG-F-SASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDGPRQQ 328 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-H-HHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 3 23333333322 22333333 3 5688999999999999999999999999999999999999999999999865442
Q ss_pred cCCCCcccccccccEEEeeeeeeCCCCCcccccccceeeeeCCCEEEEECCCCCCHHHHHHHHhhccCCCCCCC
Q 001438 1004 IGDIGEELTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKA 1077 (1077)
Q Consensus 1004 ~~~~~~~~~~~~G~I~f~nVsf~Y~~~~~~~VLk~vsl~I~~GekVaIVGrTGsGKSTLi~lL~Rfyd~~~G~i 1077 (1077)
.. ....++.+|+|+|+||+|+||++ .++|+|+||+|+|||++||||+||||||||+++|.|+|+|++|+|
T Consensus 329 ~~--~~~~~~~~~~i~~~~v~f~y~~~--~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I 398 (592)
T PRK10790 329 YG--NDDRPLQSGRIDIDNVSFAYRDD--NLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEI 398 (592)
T ss_pred CC--CCccCCCCCeEEEEEEEEEeCCC--CceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceE
Confidence 11 11122345889999999999753 358999999999999999999999999999999999999999986
No 257
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=100.00 E-value=5.3e-40 Score=359.38 Aligned_cols=216 Identities=26% Similarity=0.442 Sum_probs=181.3
Q ss_pred EEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhee
Q 001438 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (1077)
Q Consensus 382 i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 461 (1077)
++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...+++.++
T Consensus 2 l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 78 (256)
T TIGR03873 2 LRLSRVSWSAGG---RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVA 78 (256)
T ss_pred ceEEeEEEEECC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheE
Confidence 689999999964 35999999999999999999999999999999999999999999999999998888778888899
Q ss_pred EEccCCCc-ccccHHHHHhcCCCCC------CHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHH
Q 001438 462 LVNQEPAL-FATTIRENILYGKDDA------TMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRA 534 (1077)
Q Consensus 462 ~v~Q~~~l-f~~ti~~ni~~~~~~~------~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARa 534 (1077)
|++|++.+ +..|++||+.++.... ..++ ...+ +.+.++.+ |+.......+..||||||||++||||
T Consensus 79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~--~~~~---~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~a 151 (256)
T TIGR03873 79 LVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPH--DAAV---VDRALART--ELSHLADRDMSTLSGGERQRVHVARA 151 (256)
T ss_pred EecccCccCCCCCHHHHHHhcchhhhhhccCCCHH--HHHH---HHHHHHHc--CcHhhhcCCcccCCHHHHHHHHHHHH
Confidence 99999865 4569999998763110 0011 0011 11222222 23334556778999999999999999
Q ss_pred hccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHh-hcCEEEEEECCEEEEecChhHHhc
Q 001438 535 IVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIR-NADVIAVVQGRKIVKTGSHEELIS 607 (1077)
Q Consensus 535 l~~~p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~ 607 (1077)
++.+|+++||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+. .||+|++|++|++++.|+++++..
T Consensus 152 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 226 (256)
T TIGR03873 152 LAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLT 226 (256)
T ss_pred HhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHHHhhC
Confidence 999999999999999999999999999998875 4789999999999995 599999999999999999988754
No 258
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.1e-40 Score=348.02 Aligned_cols=231 Identities=32% Similarity=0.552 Sum_probs=186.7
Q ss_pred EEEEeEEEEcCCCC-CcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccC-C----CccEEEECCeeCCCCCHHH
Q 001438 382 IEFKDVSFCYPSRP-DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYE-P----LSGEILLDGNNIKGLDLKW 455 (1077)
Q Consensus 382 i~~~~v~~~y~~~~-~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~-~----~~G~i~~~g~~~~~~~~~~ 455 (1077)
++++|++.+|.... ...+++||||++++||++||||+|||||||+.++|+|+++ | .+|+|.++|+|+-.++.++
T Consensus 2 L~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~ 81 (316)
T COG0444 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKE 81 (316)
T ss_pred ceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHH
Confidence 57899999997542 3568999999999999999999999999999999999998 4 5799999999999999875
Q ss_pred Hh----hheeEEccCCCc-cc--ccHHHHH----hcCCCC-CCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCCh
Q 001438 456 LR----QQIGLVNQEPAL-FA--TTIRENI----LYGKDD-ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSG 523 (1077)
Q Consensus 456 ~r----~~i~~v~Q~~~l-f~--~ti~~ni----~~~~~~-~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSg 523 (1077)
+| +.|++|+|+|.- +| .||.+-+ ...... ...+...++. ++++.+ .+|+ -+..+...+.+|||
T Consensus 82 ~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~---~~L~~V-gi~~-~~~~~~~YPhelSG 156 (316)
T COG0444 82 LRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAI---ELLELV-GIPD-PERRLKSYPHELSG 156 (316)
T ss_pred HHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHH---HHHHHc-CCCC-HHHHHhhCCcccCC
Confidence 43 469999999842 33 1554444 322111 1111122222 223323 3443 23466778899999
Q ss_pred HHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEccCchhHhh-cCEEEEEECCEEEEec
Q 001438 524 GQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTG 600 (1077)
Q Consensus 524 Gqkqri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g 600 (1077)
|||||+.||-|++.+|++||.||||+|||..++.+|.+.|+++. .|.|+|+||||+..+.. ||||+||..|+|+|.|
T Consensus 157 GMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG~iVE~g 236 (316)
T COG0444 157 GMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIVEEG 236 (316)
T ss_pred cHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECcEEEEeC
Confidence 99999999999999999999999999999999999999999875 48999999999998865 9999999999999999
Q ss_pred ChhHHhcCCCchHHHHH
Q 001438 601 SHEELISNPNSAYAALV 617 (1077)
Q Consensus 601 ~~~~l~~~~~~~~~~~~ 617 (1077)
+.+++..++...|.+..
T Consensus 237 ~~~~i~~~P~HPYT~~L 253 (316)
T COG0444 237 PVEEIFKNPKHPYTRGL 253 (316)
T ss_pred CHHHHhcCCCChHHHHH
Confidence 99999999999998654
No 259
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-39 Score=356.72 Aligned_cols=225 Identities=30% Similarity=0.498 Sum_probs=182.9
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccC--C---CccEEEECCeeCCC--CCH
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYE--P---LSGEILLDGNNIKG--LDL 453 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~--~---~~G~i~~~g~~~~~--~~~ 453 (1077)
.|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++ | ++|+|.++|+++.. .+.
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 81 (252)
T PRK14255 5 IITSSDVHLFYGK---FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDV 81 (252)
T ss_pred eEEEEeEEEEECC---eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccH
Confidence 5899999999974 358999999999999999999999999999999999875 4 59999999999864 234
Q ss_pred HHHhhheeEEccCCCcccccHHHHHhcCCC--CC-CHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHH
Q 001438 454 KWLRQQIGLVNQEPALFATTIRENILYGKD--DA-TMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIA 530 (1077)
Q Consensus 454 ~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~--~~-~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~ 530 (1077)
..+++.++|++|++.+|+.|++||+.++.. .. ..+...+. .....+.+ .+.+++.........+||||||||++
T Consensus 82 ~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~--~~~~l~~~-~l~~~i~~~~~~~~~~LS~Gq~qrv~ 158 (252)
T PRK14255 82 VQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEA--VETSLKQA-AIWDEVKDHLHESALSLSGGQQQRVC 158 (252)
T ss_pred HHhcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHH--HHHHHHHc-CCccchhhHHhcCcccCCHHHHHHHH
Confidence 566788999999999999999999987531 11 11111111 11111111 12222334456677899999999999
Q ss_pred HHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHhcCC
Q 001438 531 ISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISNP 609 (1077)
Q Consensus 531 lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 609 (1077)
||||++.+|+++||||||++||+.+++.+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|++++.|++.++..++
T Consensus 159 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~ 238 (252)
T PRK14255 159 IARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTKQMFLNP 238 (252)
T ss_pred HHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcCC
Confidence 999999999999999999999999999999999988767899999999999865 9999999999999999999987664
Q ss_pred Cc
Q 001438 610 NS 611 (1077)
Q Consensus 610 ~~ 611 (1077)
..
T Consensus 239 ~~ 240 (252)
T PRK14255 239 KE 240 (252)
T ss_pred CC
Confidence 43
No 260
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-39 Score=357.20 Aligned_cols=221 Identities=32% Similarity=0.483 Sum_probs=183.4
Q ss_pred ccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCC-----CccEEEECCeeCCCC--C
Q 001438 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEP-----LSGEILLDGNNIKGL--D 452 (1077)
Q Consensus 380 ~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~-----~~G~i~~~g~~~~~~--~ 452 (1077)
..|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++... +
T Consensus 19 ~~l~~~nl~~~~~~---~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~ 95 (274)
T PRK14265 19 SVFEVEGVKVFYGG---FLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQIN 95 (274)
T ss_pred ceEEEeeEEEEeCC---eEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccch
Confidence 46999999999974 3589999999999999999999999999999999999863 699999999998643 3
Q ss_pred HHHHhhheeEEccCCCcccccHHHHHhcCCCCCC-----HHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHH
Q 001438 453 LKWLRQQIGLVNQEPALFATTIRENILYGKDDAT-----MEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQ 527 (1077)
Q Consensus 453 ~~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~~~~-----~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkq 527 (1077)
...+|++++|++|++.+|+.|+.||+.++..... .+.+.++++..+ +.+++.......+.+|||||||
T Consensus 96 ~~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~-------l~~~l~~~~~~~~~~LSgGq~q 168 (274)
T PRK14265 96 SVKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAA-------IWEEVKDKLKEKGTALSGGQQQ 168 (274)
T ss_pred hHHHhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcc-------cchhhHHHhcCCcccCCHHHHH
Confidence 4467789999999999998899999987632111 111122222222 2122233455677899999999
Q ss_pred HHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhh-cCEEEEEE---------CCEEE
Q 001438 528 RIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQ---------GRKIV 597 (1077)
Q Consensus 528 ri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~-~d~i~~l~---------~G~i~ 597 (1077)
|++||||++.+|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||++++|+ +|+++
T Consensus 169 rv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~ 248 (274)
T PRK14265 169 RLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLV 248 (274)
T ss_pred HHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceEE
Confidence 999999999999999999999999999999999999988778999999999998865 99999998 89999
Q ss_pred EecChhHHhcCCC
Q 001438 598 KTGSHEELISNPN 610 (1077)
Q Consensus 598 ~~g~~~~l~~~~~ 610 (1077)
+.|+++++..++.
T Consensus 249 ~~g~~~~~~~~~~ 261 (274)
T PRK14265 249 EFSPTEQMFGSPQ 261 (274)
T ss_pred EeCCHHHHHhCCC
Confidence 9999999876544
No 261
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=100.00 E-value=1e-39 Score=352.59 Aligned_cols=215 Identities=35% Similarity=0.520 Sum_probs=179.7
Q ss_pred EEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhee
Q 001438 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (1077)
Q Consensus 382 i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 461 (1077)
++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. .++.++
T Consensus 1 i~i~~l~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~--~~~~i~ 75 (237)
T TIGR00968 1 IEIANISKRFGS---FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHA--RDRKIG 75 (237)
T ss_pred CEEEEEEEEECC---eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcCEE
Confidence 478999999974 359999999999999999999999999999999999999999999999999876543 467899
Q ss_pred EEccCCCcccc-cHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccC
Q 001438 462 LVNQEPALFAT-TIRENILYGKDD--ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKN 538 (1077)
Q Consensus 462 ~v~Q~~~lf~~-ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~ 538 (1077)
|+||+|.+|++ |++||+.++... .+.....+ ...+.++.++ +.........+||||||||++||||++++
T Consensus 76 ~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~-----~~~~~l~~~~--l~~~~~~~~~~lS~G~~qrl~laral~~~ 148 (237)
T TIGR00968 76 FVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKA-----RVEELLELVQ--LEGLGDRYPNQLSGGQRQRVALARALAVE 148 (237)
T ss_pred EEecChhhccCCcHHHHHHhHHHhcCCCHHHHHH-----HHHHHHHHcC--CHhHhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 99999999976 999999875421 11111111 1122233332 22334556678999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHhcC
Q 001438 539 PSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISN 608 (1077)
Q Consensus 539 p~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 608 (1077)
|+++||||||++||+++++.+.+.|++..+ ++|+|++||+++.+.. ||++++|++|++++.|+++++.+.
T Consensus 149 p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~~ 221 (237)
T TIGR00968 149 PQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYDH 221 (237)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHHHcC
Confidence 999999999999999999999999988653 7999999999998765 999999999999999999998754
No 262
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-39 Score=357.05 Aligned_cols=226 Identities=28% Similarity=0.503 Sum_probs=183.9
Q ss_pred ccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCC-----ccEEEECCeeCCC--CC
Q 001438 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPL-----SGEILLDGNNIKG--LD 452 (1077)
Q Consensus 380 ~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~-----~G~i~~~g~~~~~--~~ 452 (1077)
+.|+++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++.. .+
T Consensus 6 ~~l~~~nl~~~~~~---~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~ 82 (261)
T PRK14258 6 PAIKVNNLSFYYDT---QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVN 82 (261)
T ss_pred ceEEEeeEEEEeCC---eeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccc
Confidence 46999999999964 25899999999999999999999999999999999999985 8999999999853 34
Q ss_pred HHHHhhheeEEccCCCcccccHHHHHhcCCCC--C-CHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHH
Q 001438 453 LKWLRQQIGLVNQEPALFATTIRENILYGKDD--A-TMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRI 529 (1077)
Q Consensus 453 ~~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~~--~-~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri 529 (1077)
...+|+.++|++|++.+|+.|++||+.++... . +..+..+. .....+.+ .+.+..+...++.+.+||||||||+
T Consensus 83 ~~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~--~~~~l~~~-~l~~~~~~~~~~~~~~LSgGq~qrv 159 (261)
T PRK14258 83 LNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDI--VESALKDA-DLWDEIKHKIHKSALDLSGGQQQRL 159 (261)
T ss_pred hHHhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHH--HHHHHHHc-CCcchhhhHhcCCcccCCHHHHHHH
Confidence 45678889999999999999999999865211 1 11111111 11111111 1222223345667789999999999
Q ss_pred HHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEccCchhHhh-cCEEEEEEC-----CEEEEecC
Q 001438 530 AISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQG-----RKIVKTGS 601 (1077)
Q Consensus 530 ~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~~~-~d~i~~l~~-----G~i~~~g~ 601 (1077)
+||||++++|+++||||||++||+.+.+.+.+.|+++. .++|+|+|||+++.+.. ||+|++|++ |++++.|+
T Consensus 160 ~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~~~~~ 239 (261)
T PRK14258 160 CIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLVEFGL 239 (261)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEEEeCC
Confidence 99999999999999999999999999999999998863 48999999999999865 999999999 99999999
Q ss_pred hhHHhcCCCc
Q 001438 602 HEELISNPNS 611 (1077)
Q Consensus 602 ~~~l~~~~~~ 611 (1077)
++++..++..
T Consensus 240 ~~~~~~~~~~ 249 (261)
T PRK14258 240 TKKIFNSPHD 249 (261)
T ss_pred HHHHHhCCCC
Confidence 9999775443
No 263
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=4e-40 Score=367.99 Aligned_cols=204 Identities=23% Similarity=0.413 Sum_probs=170.3
Q ss_pred cccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhheeEEccCCCcccc-cHH
Q 001438 397 VAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFAT-TIR 475 (1077)
Q Consensus 397 ~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~-ti~ 475 (1077)
.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ....+|+++||+||++.+++. |++
T Consensus 6 ~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~~~q~~~~~~~~tv~ 84 (302)
T TIGR01188 6 FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRKVRRSIGIVPQYASVDEDLTGR 84 (302)
T ss_pred eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-CHHHHHhhcEEecCCCCCCCCCcHH
Confidence 358999999999999999999999999999999999999999999999999875 345678889999999999876 999
Q ss_pred HHHhcCCC--CCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCH
Q 001438 476 ENILYGKD--DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDA 553 (1077)
Q Consensus 476 ~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~p~illlDEpts~lD~ 553 (1077)
||+.+... ..+.++..+. ...+ ++.+ |+......+..+||||||||++||||++.+|++|||||||++||+
T Consensus 85 e~l~~~~~~~~~~~~~~~~~--~~~~---l~~~--~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~ 157 (302)
T TIGR01188 85 ENLEMMGRLYGLPKDEAEER--AEEL---LELF--ELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDP 157 (302)
T ss_pred HHHHHHHHHcCCCHHHHHHH--HHHH---HHHc--CChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCH
Confidence 99986421 1122221111 1122 2222 233334556678999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHh-CCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHhcC
Q 001438 554 ESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISN 608 (1077)
Q Consensus 554 ~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 608 (1077)
.+.+.+.+.|+++. +|+|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 158 ~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~ 214 (302)
T TIGR01188 158 RTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRR 214 (302)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHh
Confidence 99999999998874 58999999999999875 999999999999999999998653
No 264
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=100.00 E-value=7.8e-40 Score=348.56 Aligned_cols=205 Identities=34% Similarity=0.537 Sum_probs=170.8
Q ss_pred EEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCC--CCHHHHhhh
Q 001438 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKG--LDLKWLRQQ 459 (1077)
Q Consensus 382 i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~--~~~~~~r~~ 459 (1077)
++++|++++|++ .++++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. .+...++++
T Consensus 1 l~~~~l~~~~~~---~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (213)
T cd03262 1 IEIKNLHKSFGD---FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQK 77 (213)
T ss_pred CEEEEEEEEECC---eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhc
Confidence 478999999964 358999999999999999999999999999999999999999999999999853 344567889
Q ss_pred eeEEccCCCccc-ccHHHHHhcCCC---CCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHh
Q 001438 460 IGLVNQEPALFA-TTIRENILYGKD---DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAI 535 (1077)
Q Consensus 460 i~~v~Q~~~lf~-~ti~~ni~~~~~---~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal 535 (1077)
++|++|++.+|+ .|++||+.++.. ....++..+.+ .+.++.+ |++........+||||||||++||||+
T Consensus 78 i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~-----~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~al 150 (213)
T cd03262 78 VGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERA-----LELLEKV--GLADKADAYPAQLSGGQQQRVAIARAL 150 (213)
T ss_pred ceEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHH-----HHHHHHc--CCHhHhhhCccccCHHHHHHHHHHHHH
Confidence 999999999987 599999987531 12222211111 1222222 344455667789999999999999999
Q ss_pred ccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHhh-cCEEEEEECCEE
Q 001438 536 VKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKI 596 (1077)
Q Consensus 536 ~~~p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i 596 (1077)
+.+|+++||||||++||+.+.+.+.+.|+++. .++|+|++||+++.+.. ||+|++|++|++
T Consensus 151 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 151 AMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999875 47999999999999865 999999999974
No 265
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=100.00 E-value=2.9e-40 Score=351.65 Aligned_cols=202 Identities=29% Similarity=0.517 Sum_probs=164.4
Q ss_pred EEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhheeE
Q 001438 383 EFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGL 462 (1077)
Q Consensus 383 ~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 462 (1077)
+++|++++|++ .++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++. .+|++++|
T Consensus 1 ~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~-----~~~~~i~~ 72 (213)
T cd03235 1 EVEDLTVSYGG---HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE-----KERKRIGY 72 (213)
T ss_pred CcccceeEECC---EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH-----HHHhheEE
Confidence 36899999964 35899999999999999999999999999999999999999999999998764 46778999
Q ss_pred EccCCCc---ccccHHHHHhcCCCCC------CHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHH
Q 001438 463 VNQEPAL---FATTIRENILYGKDDA------TMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISR 533 (1077)
Q Consensus 463 v~Q~~~l---f~~ti~~ni~~~~~~~------~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lAR 533 (1077)
++|++.+ ++.|++||+.++.... ..++..+ +.... ++.+ |++........+||||||||++|||
T Consensus 73 v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~--~~~~~---l~~~--~l~~~~~~~~~~LSgG~~qrv~la~ 145 (213)
T cd03235 73 VPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKA--KVDEA---LERV--GLSELADRQIGELSGGQQQRVLLAR 145 (213)
T ss_pred eccccccccCCCCcHHHHHHhccccccccccCCCHHHHH--HHHHH---HHHc--CCHHHHhCCcccCCHHHHHHHHHHH
Confidence 9999976 5679999998764211 0111111 11112 2222 2333345567789999999999999
Q ss_pred HhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHhh-cCEEEEEECCEEEEec
Q 001438 534 AIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTG 600 (1077)
Q Consensus 534 al~~~p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g 600 (1077)
|++.+|+++||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||+|++|++| +++.|
T Consensus 146 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 146 ALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCc-EeecC
Confidence 9999999999999999999999999999998875 68999999999999865 9999999986 55543
No 266
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-39 Score=354.90 Aligned_cols=231 Identities=28% Similarity=0.480 Sum_probs=185.9
Q ss_pred ccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECC------eeCCCCCH
Q 001438 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDG------NNIKGLDL 453 (1077)
Q Consensus 380 ~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g------~~~~~~~~ 453 (1077)
..++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| +++...+.
T Consensus 9 ~~i~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~ 85 (257)
T PRK14246 9 DVFNISRLYLYIND---KAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDA 85 (257)
T ss_pred hheeeeeEEEecCC---ceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCH
Confidence 35899999999974 3589999999999999999999999999999999999999997666655 56666666
Q ss_pred HHHhhheeEEccCCCcccc-cHHHHHhcCCCC--C-CHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHH
Q 001438 454 KWLRQQIGLVNQEPALFAT-TIRENILYGKDD--A-TMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRI 529 (1077)
Q Consensus 454 ~~~r~~i~~v~Q~~~lf~~-ti~~ni~~~~~~--~-~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri 529 (1077)
..+|++++|++|+|.+|++ |++||+.++... . ..++..+. ...+.+.+ .+........+..+..||||||||+
T Consensus 86 ~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~--~~~~~~~~-~l~~~~~~~~~~~~~~LS~G~~qrl 162 (257)
T PRK14246 86 IKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKI--VEECLRKV-GLWKEVYDRLNSPASQLSGGQQQRL 162 (257)
T ss_pred HHHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHH--HHHHHHHc-CCCccchhhhcCCcccCCHHHHHHH
Confidence 7788899999999999976 999999876321 1 12222111 11111111 1211111234567789999999999
Q ss_pred HHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHh-hcCEEEEEECCEEEEecChhHHhcC
Q 001438 530 AISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIR-NADVIAVVQGRKIVKTGSHEELISN 608 (1077)
Q Consensus 530 ~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 608 (1077)
+||||++.+|+++||||||++||+.+++.+.+.|.++.+++|+|++||+++.+. .||++++|++|++++.|+++++.++
T Consensus 163 ~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~g~~~~~~~~ 242 (257)
T PRK14246 163 TIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIFTS 242 (257)
T ss_pred HHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 999999999999999999999999999999999998877899999999999985 5999999999999999999999876
Q ss_pred CCchHHHH
Q 001438 609 PNSAYAAL 616 (1077)
Q Consensus 609 ~~~~~~~~ 616 (1077)
+...|.+.
T Consensus 243 ~~~~~~~~ 250 (257)
T PRK14246 243 PKNELTEK 250 (257)
T ss_pred CCcHHHHH
Confidence 55545443
No 267
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=5.6e-37 Score=375.96 Aligned_cols=386 Identities=18% Similarity=0.314 Sum_probs=317.1
Q ss_pred HHHhhcccchHHHHHHHHHHHHHhhHHhHHHHHHHHHHHhhccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 686 KLYSMVRPDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYYMDWDTTQREVKKITILFCCAAVITVIVHAIEHLSFGIM 765 (1077)
Q Consensus 686 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 765 (1077)
.++++.+++++.+....++.++........++.+..+++..+.... ..........+++++++..++.+++.++....
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 92 (582)
T PRK11176 15 RLWPTIAPFKAGLIVAGVALILNAASDTFMLSLLKPLLDDGFGKAD--RSVLKWMPLVVIGLMILRGITSFISSYCISWV 92 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555566666665555544444444444455555555554432110 11111222334445666777778888888899
Q ss_pred HHHHHHHHHHHHHHHHHcCCccccccccCCchhHHHHHhhcHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 001438 766 GERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQNFGLVTASFVIAFILNWRITLV 845 (1077)
Q Consensus 766 ~~~~~~~Lr~~l~~~llr~p~~FFD~~~~~~G~IlnR~s~D~~~i~~~l~~~l~~~~~~~~~~~~~i~i~~~~~w~l~l~ 845 (1077)
+.+....+|.++|+++++.|.++|+. ..+|++++|+++|++.++..+...+..++..++.+++.++++++++|.++++
T Consensus 93 ~~~~~~~lr~~~~~~l~~~~~~~~~~--~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~ 170 (582)
T PRK11176 93 SGKVVMTMRRRLFGHMMGMPVSFFDK--QSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSLI 170 (582)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHhCC--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999995 8999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHcchHHHHHhcchHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 001438 846 VVATYPLIISGHISEKLFFQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRSFIRGQIAGI 925 (1077)
Q Consensus 846 ~l~~~Pl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Etl~Gi~tIrAf~~e~~~~~~f~~~~~~~~~~~~~~~~~~~~ 925 (1077)
+++++|+.++......+.+++...+.++...+....+.|.++|+++||+|+.|+++.++|.+..++..+...+.....++
T Consensus 171 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (582)
T PRK11176 171 LIVIAPIVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRQQGMKMVSASSI 250 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988888777777777777788888888889999999999999999999999999999999999988888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHcCCCCccC
Q 001438 926 FYGISQFFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLALVPDLLKGNQMAASVFEVLDRKTQVIG 1005 (1077)
Q Consensus 926 ~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~ 1005 (1077)
...+.+.+..++..+++++|+.++..|.++++.++.+..+......|+..+......++++..+.+|+.++++.+++.+.
T Consensus 251 ~~~~~~~~~~~~~~~i~~~g~~~~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~ 330 (582)
T PRK11176 251 SDPIIQLIASLALAFVLYAASFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDLEQEKDE 330 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCC
Confidence 88888888888888889999999999999999999888888888889999999999999999999999999986654322
Q ss_pred CCCcccccccccEEEeeeeeeCCCCCcccccccceeeeeCCCEEEEECCCCCCHHHHHHHHhhccCCCCCCC
Q 001438 1006 DIGEELTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKA 1077 (1077)
Q Consensus 1006 ~~~~~~~~~~G~I~f~nVsf~Y~~~~~~~VLk~vsl~I~~GekVaIVGrTGsGKSTLi~lL~Rfyd~~~G~i 1077 (1077)
. ....++..|+|+|+||+|+||++ +.++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|
T Consensus 331 ~-~~~~~~~~~~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I 400 (582)
T PRK11176 331 G-KRVIERAKGDIEFRNVTFTYPGK-EVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEI 400 (582)
T ss_pred C-CcCCCCCCCeEEEEEEEEecCCC-CCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceE
Confidence 1 11223445789999999999764 3468999999999999999999999999999999999999999976
No 268
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-39 Score=361.79 Aligned_cols=224 Identities=28% Similarity=0.519 Sum_probs=185.7
Q ss_pred ccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccC-----CCccEEEECCeeCCCC--C
Q 001438 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYE-----PLSGEILLDGNNIKGL--D 452 (1077)
Q Consensus 380 ~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~-----~~~G~i~~~g~~~~~~--~ 452 (1077)
..|+++|++++|++ .++|+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++... +
T Consensus 44 ~~l~i~nl~~~~~~---~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~ 120 (305)
T PRK14264 44 AKLSVEDLDVYYGD---DHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN 120 (305)
T ss_pred ceEEEEEEEEEeCC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence 46999999999974 358999999999999999999999999999999999986 6899999999998643 3
Q ss_pred HHHHhhheeEEccCCCcccccHHHHHhcCCCCC--------------CHHHHHHHHHHHhHHHHHhcCccchhhhhcCCC
Q 001438 453 LKWLRQQIGLVNQEPALFATTIRENILYGKDDA--------------TMEEITRAAKLSEAMSFISNLPERFETQVGERG 518 (1077)
Q Consensus 453 ~~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~~~--------------~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g 518 (1077)
...+|++++|++|++.+|+.|++||+.++.... ...+. ...+...+.+.+ .+++++++..+.++
T Consensus 121 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~-~l~~~~~~~~~~~~ 198 (305)
T PRK14264 121 LVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDA-EDELVERSLRQA-ALWDEVNDRLDDNA 198 (305)
T ss_pred HHHHhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHH-HHHHHHHHHHHc-CCchhhhHHhcCcc
Confidence 556788999999999999999999998763210 00010 011111222211 34445556677888
Q ss_pred CCCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhh-cCEE-EEEECCEE
Q 001438 519 IQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVI-AVVQGRKI 596 (1077)
Q Consensus 519 ~~LSgGqkqri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~-~d~i-~~l~~G~i 596 (1077)
.+||||||||++|||||+++|+||||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||++ ++|++|++
T Consensus 199 ~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~i~~~~d~i~~~l~~G~i 278 (305)
T PRK14264 199 LGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFLTGGEL 278 (305)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEecCCEE
Confidence 999999999999999999999999999999999999999999999988777899999999999865 9997 57899999
Q ss_pred EEecChhHHhcC
Q 001438 597 VKTGSHEELISN 608 (1077)
Q Consensus 597 ~~~g~~~~l~~~ 608 (1077)
++.|+++++.+.
T Consensus 279 ~~~g~~~~~~~~ 290 (305)
T PRK14264 279 VEYDDTDKIFEN 290 (305)
T ss_pred EEeCCHHHHHhC
Confidence 999999998764
No 269
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-39 Score=351.43 Aligned_cols=215 Identities=40% Similarity=0.573 Sum_probs=178.8
Q ss_pred EEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhee
Q 001438 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (1077)
Q Consensus 382 i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 461 (1077)
|+++|++++|++ +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+. .++.++
T Consensus 1 l~~~~l~~~~~~---~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~--~~~~i~ 75 (232)
T cd03300 1 IELENVSKFYGG---FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPP--HKRPVN 75 (232)
T ss_pred CEEEeEEEEeCC---eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcceE
Confidence 468999999974 359999999999999999999999999999999999999999999999999876554 256899
Q ss_pred EEccCCCcccc-cHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccC
Q 001438 462 LVNQEPALFAT-TIRENILYGKDD--ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKN 538 (1077)
Q Consensus 462 ~v~Q~~~lf~~-ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~ 538 (1077)
|++|++.+|.+ |++||+.++... .+.+...+ +...+ ++.+ |++........+||||||||++||||++.+
T Consensus 76 ~~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~--~~~~~---l~~~--~l~~~~~~~~~~lS~G~~qrl~laral~~~ 148 (232)
T cd03300 76 TVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKE--RVAEA---LDLV--QLEGYANRKPSQLSGGQQQRVAIARALVNE 148 (232)
T ss_pred EEecccccCCCCcHHHHHHHHHHhcCCCHHHHHH--HHHHH---HHHc--CCchhhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 99999999976 999999865321 11211111 11111 1111 333445556679999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHhcC
Q 001438 539 PSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISN 608 (1077)
Q Consensus 539 p~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 608 (1077)
|+++||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+.. ||++++|++|++++.|+++++...
T Consensus 149 p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~~~~~ 221 (232)
T cd03300 149 PKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYEE 221 (232)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHHhC
Confidence 999999999999999999999999998753 8999999999999865 999999999999999999988764
No 270
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.2e-39 Score=346.24 Aligned_cols=201 Identities=28% Similarity=0.465 Sum_probs=167.5
Q ss_pred EEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhee
Q 001438 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (1077)
Q Consensus 382 i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 461 (1077)
|+++|++++|++. . .|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. .++.++
T Consensus 1 i~~~~l~~~~~~~---~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~--~~~~i~ 73 (211)
T cd03298 1 VRLDKIRFSYGEQ---P--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPP--ADRPVS 73 (211)
T ss_pred CEEEeEEEEeCCE---e--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCH--hHccEE
Confidence 4789999999632 2 39999999999999999999999999999999999999999999999876543 356899
Q ss_pred EEccCCCcccc-cHHHHHhcCCCC-CC-----HHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHH
Q 001438 462 LVNQEPALFAT-TIRENILYGKDD-AT-----MEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRA 534 (1077)
Q Consensus 462 ~v~Q~~~lf~~-ti~~ni~~~~~~-~~-----~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARa 534 (1077)
|++|++.+|++ |++||+.++... .. .+++.++++.. |++........+||||||||++||||
T Consensus 74 ~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LS~G~~qrv~ia~a 142 (211)
T cd03298 74 MLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARV-----------GLAGLEKRLPGELSGGERQRVALARV 142 (211)
T ss_pred EEecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHc-----------CCHHHHhCCcccCCHHHHHHHHHHHH
Confidence 99999999976 999999876421 11 11122222221 23333445567899999999999999
Q ss_pred hccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEccCchhHhh-cCEEEEEECCEEEEec
Q 001438 535 IVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTG 600 (1077)
Q Consensus 535 l~~~p~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g 600 (1077)
++.+|+++||||||++||+++++.+.+.|+++. .++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 143 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 143 LVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 999999999999999999999999999999874 38999999999999865 9999999999998764
No 271
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-39 Score=354.04 Aligned_cols=220 Identities=29% Similarity=0.451 Sum_probs=183.6
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCC-----CccEEEECCeeCCCC--CH
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEP-----LSGEILLDGNNIKGL--DL 453 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~-----~~G~i~~~g~~~~~~--~~ 453 (1077)
.+.+++++++|++ .++++|+||++++||+++|+|+||||||||+++|+|+++| ++|+|.++|+++... ..
T Consensus 8 ~~~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~ 84 (261)
T PRK14263 8 VMDCKLDKIFYGN---FMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDP 84 (261)
T ss_pred eEEEEeEEEEeCC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccch
Confidence 5889999999963 3589999999999999999999999999999999999986 799999999998643 33
Q ss_pred HHHhhheeEEccCCCcccccHHHHHhcCCCCC--C---HHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHH
Q 001438 454 KWLRQQIGLVNQEPALFATTIRENILYGKDDA--T---MEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQR 528 (1077)
Q Consensus 454 ~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~~~--~---~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqr 528 (1077)
..+|+.++|++|++.+|+.|++||+.++.... . .+++.++++..+ +.+......++.+.+||||||||
T Consensus 85 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~-------l~~~i~~~~~~~~~~LS~G~~qr 157 (261)
T PRK14263 85 VVVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAA-------LWDEVKDKLKVSGLSLSGGQQQR 157 (261)
T ss_pred HhhhhceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcC-------CchhhhhhhhCCcccCCHHHHHH
Confidence 46678899999999999899999998764211 1 112222222222 22222334456778999999999
Q ss_pred HHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhh-cCEEEEEE--------CCEEEEe
Q 001438 529 IAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQ--------GRKIVKT 599 (1077)
Q Consensus 529 i~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~-~d~i~~l~--------~G~i~~~ 599 (1077)
++||||++++|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||+|++|+ +|++++.
T Consensus 158 v~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~~~ 237 (261)
T PRK14263 158 LCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEM 237 (261)
T ss_pred HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEEEe
Confidence 99999999999999999999999999999999999988778999999999998765 99999996 8999999
Q ss_pred cChhHHhcCCC
Q 001438 600 GSHEELISNPN 610 (1077)
Q Consensus 600 g~~~~l~~~~~ 610 (1077)
|+++++.+++.
T Consensus 238 g~~~~~~~~~~ 248 (261)
T PRK14263 238 GPTAQIFQNPR 248 (261)
T ss_pred CCHHHHHhCCC
Confidence 99999986543
No 272
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-39 Score=357.58 Aligned_cols=216 Identities=25% Similarity=0.382 Sum_probs=182.3
Q ss_pred EEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCC--------ccEEEECCeeCCCCCH
Q 001438 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPL--------SGEILLDGNNIKGLDL 453 (1077)
Q Consensus 382 i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~--------~G~i~~~g~~~~~~~~ 453 (1077)
++++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|.++...+.
T Consensus 2 l~~~nl~~~~~~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~ 78 (272)
T PRK13547 2 LTADHLHVARRH---RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDA 78 (272)
T ss_pred eEEEEEEEEECC---EeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCH
Confidence 789999999964 35899999999999999999999999999999999999998 9999999999988877
Q ss_pred HHHhhheeEEccCCC-cccccHHHHHhcCCCCC----C--HHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHH
Q 001438 454 KWLRQQIGLVNQEPA-LFATTIRENILYGKDDA----T--MEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQK 526 (1077)
Q Consensus 454 ~~~r~~i~~v~Q~~~-lf~~ti~~ni~~~~~~~----~--~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqk 526 (1077)
..+++.++|+||++. +|+.|++||+.++.... . .++..+ ...+.++.+ |+.+..+....+||||||
T Consensus 79 ~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgG~~ 151 (272)
T PRK13547 79 PRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGE-----IAWQALALA--GATALVGRDVTTLSGGEL 151 (272)
T ss_pred HHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHH-----HHHHHHHHc--CcHhhhcCCcccCCHHHH
Confidence 788888999999986 56789999998763111 0 011111 111222222 455667778889999999
Q ss_pred HHHHHHHHhc---------cCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEccCchhHh-hcCEEEEEECC
Q 001438 527 QRIAISRAIV---------KNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIR-NADVIAVVQGR 594 (1077)
Q Consensus 527 qri~lARal~---------~~p~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~vtH~~~~~~-~~d~i~~l~~G 594 (1077)
||++||||++ .+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+. .||++++|++|
T Consensus 152 qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l~~G 231 (272)
T PRK13547 152 ARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADG 231 (272)
T ss_pred HHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECC
Confidence 9999999999 59999999999999999999999999998753 799999999999986 59999999999
Q ss_pred EEEEecChhHHhc
Q 001438 595 KIVKTGSHEELIS 607 (1077)
Q Consensus 595 ~i~~~g~~~~l~~ 607 (1077)
++++.|+++++..
T Consensus 232 ~i~~~g~~~~~~~ 244 (272)
T PRK13547 232 AIVAHGAPADVLT 244 (272)
T ss_pred eEEEecCHHHHcC
Confidence 9999999998864
No 273
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=100.00 E-value=1.6e-39 Score=357.25 Aligned_cols=231 Identities=24% Similarity=0.427 Sum_probs=182.1
Q ss_pred cEEEEeEEEEcCCC------CCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHH
Q 001438 381 HIEFKDVSFCYPSR------PDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLK 454 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~------~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~ 454 (1077)
.|+++|++++|+.. .+.++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+..
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~ 83 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYS 83 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchh
Confidence 48999999999631 124699999999999999999999999999999999999999999999999998765555
Q ss_pred HHhhheeEEccCCC--cccc-cHHHHHhcCCC---CCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHH
Q 001438 455 WLRQQIGLVNQEPA--LFAT-TIRENILYGKD---DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQR 528 (1077)
Q Consensus 455 ~~r~~i~~v~Q~~~--lf~~-ti~~ni~~~~~---~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqr 528 (1077)
..++.++|+||++. +++. |+.+|+.++.. ....++..+ +...+.+.+ .++ .........+||||||||
T Consensus 84 ~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~--~~~~~l~~~-~l~---~~~~~~~~~~LS~G~~qr 157 (267)
T PRK15112 84 YRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREK--QIIETLRQV-GLL---PDHASYYPHMLAPGQKQR 157 (267)
T ss_pred hHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHH--HHHHHHHHc-CCC---hHHHhcCchhcCHHHHHH
Confidence 56678999999985 4544 89999875321 111111111 111122222 121 111233556899999999
Q ss_pred HHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHH
Q 001438 529 IAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEEL 605 (1077)
Q Consensus 529 i~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 605 (1077)
++||||++.+|+++||||||++||+.+.+.+.+.|+++. .++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 158 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 237 (267)
T PRK15112 158 LGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGSTADV 237 (267)
T ss_pred HHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHH
Confidence 999999999999999999999999999999999999874 38899999999999976 999999999999999999999
Q ss_pred hcCCCc-hHHHHH
Q 001438 606 ISNPNS-AYAALV 617 (1077)
Q Consensus 606 ~~~~~~-~~~~~~ 617 (1077)
...+.. .+..++
T Consensus 238 ~~~~~~~~~~~~~ 250 (267)
T PRK15112 238 LASPLHELTKRLI 250 (267)
T ss_pred hcCCCCHHHHHHH
Confidence 875433 333444
No 274
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=1.2e-39 Score=371.41 Aligned_cols=235 Identities=32% Similarity=0.521 Sum_probs=192.2
Q ss_pred ccEEEEeEEEEcCCC--------CCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCee--CC
Q 001438 380 GHIEFKDVSFCYPSR--------PDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNN--IK 449 (1077)
Q Consensus 380 ~~i~~~~v~~~y~~~--------~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~--~~ 449 (1077)
.-++++|++++|..+ ....+++||||++++||++||||+||||||||.++|+|+.+|++|+|.++|.+ ++
T Consensus 279 ~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~ 358 (539)
T COG1123 279 PLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLT 358 (539)
T ss_pred ceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccccc
Confidence 458899999999742 13468999999999999999999999999999999999999999999999987 23
Q ss_pred CCCHHHHhhheeEEccCCCc--cc-ccHHHHHhcCCCCCC-HHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHH
Q 001438 450 GLDLKWLRQQIGLVNQEPAL--FA-TTIRENILYGKDDAT-MEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQ 525 (1077)
Q Consensus 450 ~~~~~~~r~~i~~v~Q~~~l--f~-~ti~~ni~~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq 525 (1077)
.-+....|+++-+|+|||.- -+ .||+++|.-...... ........+.+.+++.+ .||.. .....+.+|||||
T Consensus 359 ~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~V-gL~~~---~l~ryP~elSGGQ 434 (539)
T COG1123 359 GGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELV-GLPPE---FLDRYPHELSGGQ 434 (539)
T ss_pred cchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHc-CCCHH---HHhcCchhcCcch
Confidence 22345678899999999963 33 499999975432111 11111122344444433 34422 4677889999999
Q ss_pred HHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEccCchhHhh-cCEEEEEECCEEEEecCh
Q 001438 526 KQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSH 602 (1077)
Q Consensus 526 kqri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~ 602 (1077)
|||+||||||..+|+++++|||||+||+.+...+.+.|+++.+ |.|.|+|||++..+++ ||||+||++|+|+|.|+.
T Consensus 435 rQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G~iVE~G~~ 514 (539)
T COG1123 435 RQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEEGPT 514 (539)
T ss_pred hHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECCeEEEeCCH
Confidence 9999999999999999999999999999999999999998753 7999999999999987 999999999999999999
Q ss_pred hHHhcCCCchHHHHHH
Q 001438 603 EELISNPNSAYAALVQ 618 (1077)
Q Consensus 603 ~~l~~~~~~~~~~~~~ 618 (1077)
+++.+++...|.+...
T Consensus 515 ~~v~~~p~h~Ytr~L~ 530 (539)
T COG1123 515 EKVFENPQHPYTRKLL 530 (539)
T ss_pred HHHhcCCCChHHHHHH
Confidence 9999998888887553
No 275
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.5e-39 Score=348.90 Aligned_cols=209 Identities=33% Similarity=0.488 Sum_probs=175.7
Q ss_pred EEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhee
Q 001438 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (1077)
Q Consensus 382 i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 461 (1077)
++++|++++|++. ..|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+.. ++.++
T Consensus 2 l~~~~l~~~~~~~-----~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~--~~~i~ 74 (232)
T PRK10771 2 LKLTDITWLYHHL-----PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPS--RRPVS 74 (232)
T ss_pred eEEEEEEEEECCc-----cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChh--hccEE
Confidence 6899999999632 2389999999999999999999999999999999999999999999998765432 56799
Q ss_pred EEccCCCcccc-cHHHHHhcCCCCC---C---HHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHH
Q 001438 462 LVNQEPALFAT-TIRENILYGKDDA---T---MEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRA 534 (1077)
Q Consensus 462 ~v~Q~~~lf~~-ti~~ni~~~~~~~---~---~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARa 534 (1077)
|+||++.+|++ |++||+.++.... . .+++.++++.. |++..+......||||||||++||||
T Consensus 75 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LS~G~~qrv~lara 143 (232)
T PRK10771 75 MLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQM-----------GIEDLLARLPGQLSGGQRQRVALARC 143 (232)
T ss_pred EEecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHc-----------CcHHHHhCCcccCCHHHHHHHHHHHH
Confidence 99999999986 9999998753111 1 11122222222 33444556667899999999999999
Q ss_pred hccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHhcC
Q 001438 535 IVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISN 608 (1077)
Q Consensus 535 l~~~p~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 608 (1077)
++++|+++||||||++||+.+.+.+.+.|+++. .++|+|++||+++.+.. ||++++|++|++++.|+++++...
T Consensus 144 l~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~~~ 220 (232)
T PRK10771 144 LVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLSG 220 (232)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 999999999999999999999999999998874 37899999999999865 999999999999999999998764
No 276
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=100.00 E-value=4e-37 Score=372.76 Aligned_cols=382 Identities=12% Similarity=0.102 Sum_probs=297.6
Q ss_pred hHHHHHhhcc-cchHHHHHHHHHHHHHhhHHhHHHHHHHHHHHhhccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 683 SAIKLYSMVR-PDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYYMDWDTTQREVKKITILFCCAAVITVIVHAIEHLS 761 (1077)
Q Consensus 683 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 761 (1077)
..++++++++ ++++.+..++++.++.+......++.+...++.....+ . .....+.++.++..++.+.+.++
T Consensus 4 ~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~-----~--~~~~~~~~~~~~~~~~~~~~~~~ 76 (555)
T TIGR01194 4 AIGEILALLRSPFPAITAFSIALGLAGGLAIIALLASINNAIHEENFLG-----Q--GSLFSFGGLCLLALLFRIGADIF 76 (555)
T ss_pred hHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc-----c--hHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567778888 88888888777777777666666666555543210000 0 01122344555666778888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCccccccccCCchhHHHHHhhcHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHH
Q 001438 762 FGIMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQNFGLVTASFVIAFILNWR 841 (1077)
Q Consensus 762 ~~~~~~~~~~~Lr~~l~~~llr~p~~FFD~~~~~~G~IlnR~s~D~~~i~~~l~~~l~~~~~~~~~~~~~i~i~~~~~w~ 841 (1077)
....+.+...++|.++|+++++.|++||++ +++|++++|+++|++.+++.+.. +..++..++.+++.++++++.+|+
T Consensus 77 ~~~~~~~~~~~lR~~l~~~l~~~~~~~~~~--~~~G~l~srl~~Dv~~i~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~ 153 (555)
T TIGR01194 77 PAYAGMHIIANLRIALCEKILGAPIEEIDR--RGAHNLIPLLTHDIDQINAFLFI-FPPIAIALAIFFFCIAYLAYLSVP 153 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHHh--cCcchhhHHHhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHH
Confidence 999999999999999999999999999995 89999999999999999998864 777788888888899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHcchHHHHHhcchH--HHHHHHHHHhhhhhHHHHHH
Q 001438 842 ITLVVVATYPLIISGHISEKLFFQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSED--KVLELYSRELVEPSKRSFIR 919 (1077)
Q Consensus 842 l~l~~l~~~Pl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Etl~Gi~tIrAf~~e~--~~~~~f~~~~~~~~~~~~~~ 919 (1077)
+++++++.+|+.++...+..++.++...+.++...+.+..+.|.+.|+++||+|+.++ .+.++|.+..++..+.....
T Consensus 154 L~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (555)
T TIGR01194 154 MFAITISAIIIGTAAQLLAFMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESANNIADLHIIE 233 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 9999998888887777666666666667777788888999999999999999999954 55777887777777666555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHcC
Q 001438 920 GQIAGIFYGISQFFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLALVPDLLKGNQMAASVFEVLDR 999 (1077)
Q Consensus 920 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~ 999 (1077)
....+...++...+.....++.+++|+.. +.++++.++++..++.....|+..+......++++..+.+|+.++++.
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~a~~s~~ri~~ll~~ 310 (555)
T TIGR01194 234 ILIFIAAENFGQLLFFLLIGCALFAAAMF---ASIDAAAISAFVLALLYIKGPLEMLVSALPILAQAQIACQRLADFGER 310 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 54554444555555555555566666543 678999999999999999999999999999999999999999999863
Q ss_pred CCC--ccC--CCCc-----ccccccccEEEeeeeeeCCCCC--cccccccceeeeeCCCEEEEECCCCCCHHHHHHHHhh
Q 001438 1000 KTQ--VIG--DIGE-----ELTNVEGTIELRGVHFSYPSRP--EVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILR 1068 (1077)
Q Consensus 1000 ~~~--~~~--~~~~-----~~~~~~G~I~f~nVsf~Y~~~~--~~~VLk~vsl~I~~GekVaIVGrTGsGKSTLi~lL~R 1068 (1077)
..+ ... +... +.+...++|+|+||+|+|++.+ ..++|+|+||+|++||++|||||||||||||+++|.|
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g 390 (555)
T TIGR01194 311 FNEPEPELELSDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCG 390 (555)
T ss_pred hccccccccccccccccccccCCCCceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 211 110 1000 1112347899999999997532 2358999999999999999999999999999999999
Q ss_pred ccCCCCCCC
Q 001438 1069 FYDPTAGKA 1077 (1077)
Q Consensus 1069 fyd~~~G~i 1077 (1077)
+|+|++|+|
T Consensus 391 ~~~p~~G~i 399 (555)
T TIGR01194 391 LYIPQEGEI 399 (555)
T ss_pred CCCCCCcEE
Confidence 999999975
No 277
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=100.00 E-value=3.7e-39 Score=353.99 Aligned_cols=215 Identities=27% Similarity=0.402 Sum_probs=178.0
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCC---ccEEEECCeeCCCC-----C
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPL---SGEILLDGNNIKGL-----D 452 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~---~G~i~~~g~~~~~~-----~ 452 (1077)
.++++|+++.|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|.++... +
T Consensus 4 ~l~~~nl~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~ 80 (262)
T PRK09984 4 IIRVEKLAKTFNQ---HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARD 80 (262)
T ss_pred EEEEeeEEEEeCC---eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchh
Confidence 5899999999964 35899999999999999999999999999999999999986 49999999988653 2
Q ss_pred HHHHhhheeEEccCCCcccc-cHHHHHhcCCCCCC----------HHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCC
Q 001438 453 LKWLRQQIGLVNQEPALFAT-TIRENILYGKDDAT----------MEEITRAAKLSEAMSFISNLPERFETQVGERGIQL 521 (1077)
Q Consensus 453 ~~~~r~~i~~v~Q~~~lf~~-ti~~ni~~~~~~~~----------~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~L 521 (1077)
...++++++|+||++.+|+. |++||+.++..... .++. ..+ ..+.++.+ |+.........+|
T Consensus 81 ~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~--~~~---~~~~l~~~--~l~~~~~~~~~~L 153 (262)
T PRK09984 81 IRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQ--KQR---ALQALTRV--GMVHFAHQRVSTL 153 (262)
T ss_pred HHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHH--HHH---HHHHHHHc--CCHHHHhCCcccc
Confidence 34567889999999998875 99999987642110 0111 111 11222222 3333455677789
Q ss_pred ChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEccCchhHh-hcCEEEEEECCEEEE
Q 001438 522 SGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIR-NADVIAVVQGRKIVK 598 (1077)
Q Consensus 522 SgGqkqri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~~-~~d~i~~l~~G~i~~ 598 (1077)
|||||||++||||++.+|++|||||||++||+++.+.+.+.|+++. +|+|+|++||+++.+. .||+|++|++|++++
T Consensus 154 S~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g~i~~ 233 (262)
T PRK09984 154 SGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFY 233 (262)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999875 3799999999999865 599999999999999
Q ss_pred ecChhHH
Q 001438 599 TGSHEEL 605 (1077)
Q Consensus 599 ~g~~~~l 605 (1077)
.|+++++
T Consensus 234 ~g~~~~~ 240 (262)
T PRK09984 234 DGSSQQF 240 (262)
T ss_pred eCCHHHh
Confidence 9999986
No 278
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=5e-37 Score=373.43 Aligned_cols=360 Identities=17% Similarity=0.206 Sum_probs=296.8
Q ss_pred hHHHHHHHHHHHhhccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccc
Q 001438 713 PLFALGVSQALVAYYMDWDTTQREVKKITILFCCAAVITVIVHAIEHLSFGIMGERLTLRVREKMFSAILSNEIGWFDEM 792 (1077)
Q Consensus 713 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~Lr~~l~~~llr~p~~FFD~~ 792 (1077)
...++.+..+++..+..... ......+..+++++.++..++.+++.++....+.+...++|.++|++++++|++||++
T Consensus 12 ~~~p~~~~~iid~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~- 89 (569)
T PRK10789 12 LIPPKVVGIIVDGVTEQHMT-TGQILMWIGTMVLIAVVVYLLRYVWRVLLFGASYQLAVELREDFYRQLSRQHPEFYLR- 89 (569)
T ss_pred HHHHHHHHHHHHHhccCCcc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcC-
Confidence 34556666677654321111 1112233444445555666677777788888999999999999999999999999995
Q ss_pred cCCchhHHHHHhhcHHHHHHHHHhhHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 001438 793 DNSSSILASRLESDATLLRTIVVDRSTILIQNFGLVTASFVIA-FILNWRITLVVVATYPLIISGHISEKLFFQGYGGNL 871 (1077)
Q Consensus 793 ~~~~G~IlnR~s~D~~~i~~~l~~~l~~~~~~~~~~~~~i~i~-~~~~w~l~l~~l~~~Pl~i~~~~~~~~~~~~~~~~~ 871 (1077)
+++|++++|+++|++.++......+..++..++..+++++++ ++++|++++++++++|+.++......+..++..++.
T Consensus 90 -~~~g~i~srl~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~ 168 (569)
T PRK10789 90 -HRTGDLMARATNDVDRVVFAAGEGVLTLVDSLVMGCAVLIVMSTQISWQLTLLALLPMPVMAIMIKRYGDQLHERFKLA 168 (569)
T ss_pred -CCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999888888888887766666665555 579999999999999998887777777777777777
Q ss_pred HHHHHHHhHHHHHHHcchHHHHHhcchHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 001438 872 SKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRSFIRGQIAGIFYGISQFFIFSSYGLALWYGSVLMGK 951 (1077)
Q Consensus 872 ~~~~~~~~~~~~Etl~Gi~tIrAf~~e~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~ 951 (1077)
++...+....+.|+++|+++||+|+.|+++.++|.+..++..+...+.....+.+.+..+........+++++|+.++..
T Consensus 169 ~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~ 248 (569)
T PRK10789 169 QAAFSSLNDRTQESLTSIRMIKAFGLEDRQSALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAIGGGSWMVVN 248 (569)
T ss_pred HHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 88888888999999999999999999999999999999988888888777777777777777777778888999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHcCCCCccCCCCcccccccccEEEeeeeeeCCCCC
Q 001438 952 ELASFKSVMKSFMVLIVTALAMGETLALVPDLLKGNQMAASVFEVLDRKTQVIGDIGEELTNVEGTIELRGVHFSYPSRP 1031 (1077)
Q Consensus 952 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~~ 1031 (1077)
|.++++.++++..+......|+..+......++.+..+.+|+.++++.+++.... ....++.+|+|+|+||+|+|+..
T Consensus 249 g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~ll~~~~~~~~~-~~~~~~~~~~I~~~~v~~~y~~~- 326 (569)
T PRK10789 249 GSLTLGQLTSFVMYLGLMIWPMLALAWMFNIVERGSAAYSRIRAMLAEAPVVKDG-SEPVPEGRGELDVNIRQFTYPQT- 326 (569)
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCC-CCCCCCCCCcEEEEEEEEECCCC-
Confidence 9999999999999998888999999999999999999999999999876543221 11122346789999999999753
Q ss_pred cccccccceeeeeCCCEEEEECCCCCCHHHHHHHHhhccCCCCCCC
Q 001438 1032 EVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKA 1077 (1077)
Q Consensus 1032 ~~~VLk~vsl~I~~GekVaIVGrTGsGKSTLi~lL~Rfyd~~~G~i 1077 (1077)
+.++|+|+||+|+|||++|||||||||||||+++|.|+|+|++|+|
T Consensus 327 ~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i 372 (569)
T PRK10789 327 DHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDI 372 (569)
T ss_pred CCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEE
Confidence 3468999999999999999999999999999999999999999975
No 279
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=100.00 E-value=1.6e-39 Score=353.67 Aligned_cols=216 Identities=25% Similarity=0.356 Sum_probs=174.1
Q ss_pred EEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhccc--CCCccEEEECCeeCCCCCHHHH-hh
Q 001438 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFY--EPLSGEILLDGNNIKGLDLKWL-RQ 458 (1077)
Q Consensus 382 i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~--~~~~G~i~~~g~~~~~~~~~~~-r~ 458 (1077)
|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|++ +|++|+|.++|+++...+.... +.
T Consensus 1 l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 77 (243)
T TIGR01978 1 LKIKDLHVSVED---KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARA 77 (243)
T ss_pred CeEeeEEEEECC---EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhcc
Confidence 478999999963 35899999999999999999999999999999999994 7999999999999988776554 44
Q ss_pred heeEEccCCCcccc-cHHHHHhcCCCC---------CCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCC-CCChHHHH
Q 001438 459 QIGLVNQEPALFAT-TIRENILYGKDD---------ATMEEITRAAKLSEAMSFISNLPERFETQVGERGI-QLSGGQKQ 527 (1077)
Q Consensus 459 ~i~~v~Q~~~lf~~-ti~~ni~~~~~~---------~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~-~LSgGqkq 527 (1077)
.++|++|++.+|++ |++||+.+.... .+.++..+ +.....+.+ .+++. ....... +|||||||
T Consensus 78 ~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~-~l~~~---~~~~~~~~~LS~G~~q 151 (243)
T TIGR01978 78 GLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLK--LLKAKLALL-GMDEE---FLNRSVNEGFSGGEKK 151 (243)
T ss_pred ceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHH--HHHHHHHHc-CCchh---hcccccccCcCHHHHH
Confidence 59999999999886 999999764211 01111111 111122211 23221 1233333 59999999
Q ss_pred HHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHhh--cCEEEEEECCEEEEecChhH
Q 001438 528 RIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN--ADVIAVVQGRKIVKTGSHEE 604 (1077)
Q Consensus 528 ri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~--~d~i~~l~~G~i~~~g~~~~ 604 (1077)
|++||||++.+|+++||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||++++|++|++++.|++++
T Consensus 152 rl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 231 (243)
T TIGR01978 152 RNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGDVEL 231 (243)
T ss_pred HHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEecCHHH
Confidence 9999999999999999999999999999999999998875 47999999999999875 79999999999999999876
Q ss_pred Hh
Q 001438 605 LI 606 (1077)
Q Consensus 605 l~ 606 (1077)
+.
T Consensus 232 ~~ 233 (243)
T TIGR01978 232 AK 233 (243)
T ss_pred hc
Confidence 53
No 280
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=100.00 E-value=2e-39 Score=369.26 Aligned_cols=216 Identities=31% Similarity=0.486 Sum_probs=178.9
Q ss_pred eEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCC----HHHHhhhee
Q 001438 386 DVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLD----LKWLRQQIG 461 (1077)
Q Consensus 386 ~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~----~~~~r~~i~ 461 (1077)
|++++|++ .. + |+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+ ....|++++
T Consensus 4 ~l~~~~~~---~~-~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~ 78 (354)
T TIGR02142 4 RFSKRLGD---FS-L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIG 78 (354)
T ss_pred EEEEEECC---EE-E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeE
Confidence 78999963 23 4 999999999999999999999999999999999999999999999986532 235677899
Q ss_pred EEccCCCcccc-cHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccCCC
Q 001438 462 LVNQEPALFAT-TIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPS 540 (1077)
Q Consensus 462 ~v~Q~~~lf~~-ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~p~ 540 (1077)
|++|++.+|+. |++||+.++.......+.. .+. .+.++.+ |++........+||||||||++|||||+.+|+
T Consensus 79 ~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~--~~~---~~~l~~~--gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~ 151 (354)
T TIGR02142 79 YVFQEARLFPHLSVRGNLRYGMKRARPSERR--ISF---ERVIELL--GIGHLLGRLPGRLSGGEKQRVAIGRALLSSPR 151 (354)
T ss_pred EEecCCccCCCCcHHHHHHHHhhccChhHHH--HHH---HHHHHHc--CChhHhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 99999999976 9999999875322211111 111 1222222 44555667778999999999999999999999
Q ss_pred EEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHhcCCCchH
Q 001438 541 ILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISNPNSAY 613 (1077)
Q Consensus 541 illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~~~ 613 (1077)
+|||||||++||+.+++.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++..++...|
T Consensus 152 lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~ 227 (354)
T TIGR02142 152 LLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASPDLPW 227 (354)
T ss_pred EEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHHHhcCcCccc
Confidence 9999999999999999999999998753 7999999999999865 99999999999999999999987654443
No 281
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.9e-39 Score=348.66 Aligned_cols=215 Identities=34% Similarity=0.562 Sum_probs=178.4
Q ss_pred EEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhee
Q 001438 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (1077)
Q Consensus 382 i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 461 (1077)
|+++|++++|++ ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++...+. .++.++
T Consensus 1 l~~~~l~~~~~~----~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~--~~~~i~ 74 (235)
T cd03299 1 LKVENLSKDWKE----FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPP--EKRDIS 74 (235)
T ss_pred CeeEeEEEEeCC----ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCCh--hHcCEE
Confidence 468999999963 27999999999999999999999999999999999999999999999999876554 367899
Q ss_pred EEccCCCccc-ccHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccC
Q 001438 462 LVNQEPALFA-TTIRENILYGKDD--ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKN 538 (1077)
Q Consensus 462 ~v~Q~~~lf~-~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~ 538 (1077)
|++|++.+|+ .|++||+.++... .+..+..+ +...+.+ .+ |+...+.....+||||||||++||||++.+
T Consensus 75 ~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~--~~~~~l~---~~--~l~~~~~~~~~~LS~G~~qrl~laral~~~ 147 (235)
T cd03299 75 YVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIER--KVLEIAE---ML--GIDHLLNRKPETLSGGEQQRVAIARALVVN 147 (235)
T ss_pred EEeecCccCCCccHHHHHHHHHHHcCCCHHHHHH--HHHHHHH---Hc--CChhHHhcCcccCCHHHHHHHHHHHHHHcC
Confidence 9999999986 5999999875321 11221111 1111222 11 233334556678999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHhcCC
Q 001438 539 PSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISNP 609 (1077)
Q Consensus 539 p~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 609 (1077)
|++++|||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.+
T Consensus 148 p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~ 221 (235)
T cd03299 148 PKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFKKP 221 (235)
T ss_pred CCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHhCc
Confidence 999999999999999999999999988643 8999999999999875 9999999999999999999887653
No 282
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=6.8e-40 Score=312.25 Aligned_cols=221 Identities=33% Similarity=0.533 Sum_probs=186.6
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCC---------
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGL--------- 451 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~--------- 451 (1077)
.++++|+.++|+.. .+|++||++-++|+.+.|+|.|||||||+++||.=+-.|+.|+|.++|..|+-.
T Consensus 6 ~l~v~dlHK~~G~~---eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ 82 (256)
T COG4598 6 ALEVEDLHKRYGEH---EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKP 82 (256)
T ss_pred ceehhHHHhhcccc---hhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeee
Confidence 58899999999754 499999999999999999999999999999999999999999999999987532
Q ss_pred -C---HHHHhhheeEEccCCCcccc-cHHHHHhcCCC----CCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCC
Q 001438 452 -D---LKWLRQQIGLVNQEPALFAT-TIRENILYGKD----DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLS 522 (1077)
Q Consensus 452 -~---~~~~r~~i~~v~Q~~~lf~~-ti~~ni~~~~~----~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LS 522 (1077)
+ ...+|.+.++|+|+..|.+- |+.||+.-..- ..+.+.+.+|.+. +.+ -|++......+..||
T Consensus 83 ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~------L~k--VGi~ek~~~YP~~LS 154 (256)
T COG4598 83 ADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKY------LAK--VGIAEKADAYPAHLS 154 (256)
T ss_pred CCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHH------HHH--hCchhhhhcCccccC
Confidence 1 34578899999999999975 99999874321 1122333333222 221 145555556788999
Q ss_pred hHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHhh-cCEEEEEECCEEEEec
Q 001438 523 GGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTG 600 (1077)
Q Consensus 523 gGqkqri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g 600 (1077)
|||+||++|||||..+|+++++|||||||||+---++++.++++. .|+|.++|||.+.+.++ +.+++.|++|+|-|+|
T Consensus 155 GGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~fLh~G~iEE~G 234 (256)
T COG4598 155 GGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIEEEG 234 (256)
T ss_pred chHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhheEEeecceecccC
Confidence 999999999999999999999999999999999999999998874 69999999999999988 8999999999999999
Q ss_pred ChhHHhcCCCch
Q 001438 601 SHEELISNPNSA 612 (1077)
Q Consensus 601 ~~~~l~~~~~~~ 612 (1077)
+|+++..+|.+.
T Consensus 235 ~P~qvf~nP~S~ 246 (256)
T COG4598 235 PPEQVFGNPQSP 246 (256)
T ss_pred ChHHHhcCCCCH
Confidence 999999887644
No 283
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=100.00 E-value=1.4e-36 Score=372.13 Aligned_cols=388 Identities=23% Similarity=0.354 Sum_probs=319.6
Q ss_pred HHHhhcccchHHHHHHHHHHHHHhhHHhHHHHHHHHHHHhhccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 686 KLYSMVRPDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYYMDWDTTQREVKKITILFCCAAVITVIVHAIEHLSFGIM 765 (1077)
Q Consensus 686 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 765 (1077)
.++++.+++++++...+++.++.+......++.+..+++..+...+ ......+..+++++.++..++.+.+.+.....
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (576)
T TIGR02204 8 ALWPFVRPYRGRVLAALVALLITAAATLSLPYAVRLMIDHGFSKDS--SGLLNRYFAFLLVVALVLALGTAARFYLVTWL 85 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhccccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555666666667777777777777778888888776443211 11222233344455555666777888899999
Q ss_pred HHHHHHHHHHHHHHHHHcCCccccccccCCchhHHHHHhhcHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 001438 766 GERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQNFGLVTASFVIAFILNWRITLV 845 (1077)
Q Consensus 766 ~~~~~~~Lr~~l~~~llr~p~~FFD~~~~~~G~IlnR~s~D~~~i~~~l~~~l~~~~~~~~~~~~~i~i~~~~~w~l~l~ 845 (1077)
+.++...+|..+|+++++.|.++|+. .++|++++|+++|++.+++.+...+..++..++.+++.++++++++|.++++
T Consensus 86 ~~~~~~~lr~~l~~~l~~~~~~~~~~--~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 163 (576)
T TIGR02204 86 GERVVADIRRAVFAHLISLSPSFFDK--NRSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPKLTSL 163 (576)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHcc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 99999999999999999999999995 8899999999999999999999989898999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHcchHHHHHhcchHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 001438 846 VVATYPLIISGHISEKLFFQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRSFIRGQIAGI 925 (1077)
Q Consensus 846 ~l~~~Pl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Etl~Gi~tIrAf~~e~~~~~~f~~~~~~~~~~~~~~~~~~~~ 925 (1077)
+++.+|+.++...+..+..++..++.++...+..+.+.|.++|+++||+|+.|+++.++|.+..++..+...+......+
T Consensus 164 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (576)
T TIGR02204 164 VLLAVPLVLLPILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRIRTRAL 243 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988988877777777777777788888888888999999999999999999999999999999888777776666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHcCCCCccC
Q 001438 926 FYGISQFFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLALVPDLLKGNQMAASVFEVLDRKTQVIG 1005 (1077)
Q Consensus 926 ~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~ 1005 (1077)
...+...+......+.+++|+.++..|.++++.++++..+......++..+......+..+..+.+|+.++++.+++.+.
T Consensus 244 ~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~ 323 (576)
T TIGR02204 244 LTAIVIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDIKA 323 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCC
Confidence 66666666667777888899999999999999999998888888999999999999999999999999999987655332
Q ss_pred CC-Cc-ccccccccEEEeeeeeeCCCCCcccccccceeeeeCCCEEEEECCCCCCHHHHHHHHhhccCCCCCCC
Q 001438 1006 DI-GE-ELTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKA 1077 (1077)
Q Consensus 1006 ~~-~~-~~~~~~G~I~f~nVsf~Y~~~~~~~VLk~vsl~I~~GekVaIVGrTGsGKSTLi~lL~Rfyd~~~G~i 1077 (1077)
.. .. ..++..+.|+|+||+|+||++.+.++|+|+||+|+|||++||||+||||||||+++|.|+|+|++|+|
T Consensus 324 ~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I 397 (576)
T TIGR02204 324 PAHPKTLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRI 397 (576)
T ss_pred CCCCccCCcCCCceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEE
Confidence 11 11 11233578999999999986543568999999999999999999999999999999999999999975
No 284
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.1e-39 Score=353.18 Aligned_cols=206 Identities=26% Similarity=0.446 Sum_probs=170.6
Q ss_pred EEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhee
Q 001438 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (1077)
Q Consensus 382 i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 461 (1077)
++++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++... +..++
T Consensus 2 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-----~~~~~ 73 (255)
T PRK11248 2 LQISHLYADYGG---KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGP-----GAERG 73 (255)
T ss_pred EEEEEEEEEeCC---eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC-----CCcEE
Confidence 789999999964 3589999999999999999999999999999999999999999999999988642 23599
Q ss_pred EEccCCCccc-ccHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccC
Q 001438 462 LVNQEPALFA-TTIRENILYGKD--DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKN 538 (1077)
Q Consensus 462 ~v~Q~~~lf~-~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~ 538 (1077)
|++|++.+|+ .|++||+.++.. ....++..+ + ..+.++.+ |++......+.+||||||||++||||++.+
T Consensus 74 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~--~---~~~~l~~~--gl~~~~~~~~~~LSgGq~qrl~laral~~~ 146 (255)
T PRK11248 74 VVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLE--I---AHQMLKKV--GLEGAEKRYIWQLSGGQRQRVGIARALAAN 146 (255)
T ss_pred EEeCCCccCCCCcHHHHHHhHHHHcCCCHHHHHH--H---HHHHHHHc--CChhHhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 9999999887 499999987532 111111111 1 11222222 333444566789999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEccCchhHhh-cCEEEEEE--CCEEEEecCh
Q 001438 539 PSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQ--GRKIVKTGSH 602 (1077)
Q Consensus 539 p~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~~~-~d~i~~l~--~G~i~~~g~~ 602 (1077)
|++|||||||++||+.+.+.+.+.|+++. .|+|+|++||+++.+.. ||+|++|+ +|++++.++.
T Consensus 147 p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 215 (255)
T PRK11248 147 PQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVERLPL 215 (255)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEecC
Confidence 99999999999999999999999998863 48999999999999865 99999999 5999998765
No 285
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=100.00 E-value=1.4e-39 Score=349.37 Aligned_cols=211 Identities=26% Similarity=0.448 Sum_probs=170.6
Q ss_pred EEEEeEEEEcCCCC-CcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccC---CCccEEEECCeeCCCCCHHHHh
Q 001438 382 IEFKDVSFCYPSRP-DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYE---PLSGEILLDGNNIKGLDLKWLR 457 (1077)
Q Consensus 382 i~~~~v~~~y~~~~-~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~---~~~G~i~~~g~~~~~~~~~~~r 457 (1077)
++++||+++|++.. .+++++|+||++++||+++|+||||||||||+++|+|+++ |++|+|.++|+++. ...+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~---~~~~~ 80 (226)
T cd03234 4 LPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRK---PDQFQ 80 (226)
T ss_pred ceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECC---hHHhc
Confidence 57999999997542 3579999999999999999999999999999999999999 99999999999875 34577
Q ss_pred hheeEEccCCCcccc-cHHHHHhcCCCC----CCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHH
Q 001438 458 QQIGLVNQEPALFAT-TIRENILYGKDD----ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAIS 532 (1077)
Q Consensus 458 ~~i~~v~Q~~~lf~~-ti~~ni~~~~~~----~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lA 532 (1077)
++++|++|++.+|++ |++||+.++... ...++.... .... ..++.+ ++.........+||||||||++||
T Consensus 81 ~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~-~~~~--~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la 155 (226)
T cd03234 81 KCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKK-RVED--VLLRDL--ALTRIGGNLVKGISGGERRRVSIA 155 (226)
T ss_pred ccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHH-HHHH--HHHHhh--cchhhhcccccCcCHHHHHHHHHH
Confidence 889999999999987 999999875311 111111100 1111 012111 233334456779999999999999
Q ss_pred HHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCc-hhH-hhcCEEEEEECCEEEEec
Q 001438 533 RAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRL-STI-RNADVIAVVQGRKIVKTG 600 (1077)
Q Consensus 533 Ral~~~p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~-~~~-~~~d~i~~l~~G~i~~~g 600 (1077)
||++.+|+++||||||++||+.+.+.+.+.|++.. +++|+|++||++ +.+ +.||++++|++|++++.|
T Consensus 156 ral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 156 VQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred HHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 99999999999999999999999999999998874 578999999998 455 569999999999999865
No 286
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=100.00 E-value=3.5e-39 Score=354.35 Aligned_cols=227 Identities=26% Similarity=0.410 Sum_probs=184.1
Q ss_pred cEEEEeEEEEcCCC------CCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCH-
Q 001438 381 HIEFKDVSFCYPSR------PDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDL- 453 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~------~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~- 453 (1077)
.|+++|+++.|+.. .++++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++..++.
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~ 82 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRA 82 (268)
T ss_pred eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChh
Confidence 38899999999731 12469999999999999999999999999999999999999999999999999887665
Q ss_pred --HHHhhheeEEccCCC--ccc-ccHHHHHhcCCC---CCCHHHHHHHHHHHhHHHHHhcCccchhh-hhcCCCCCCChH
Q 001438 454 --KWLRQQIGLVNQEPA--LFA-TTIRENILYGKD---DATMEEITRAAKLSEAMSFISNLPERFET-QVGERGIQLSGG 524 (1077)
Q Consensus 454 --~~~r~~i~~v~Q~~~--lf~-~ti~~ni~~~~~---~~~~~~~~~~~~~~~~~~~i~~l~~g~~t-~~~~~g~~LSgG 524 (1077)
..+|+.++|++|++. +++ .|++||+.+... .....+.. ....+.++.+ |+++ ..+..+.+||||
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~-----~~~~~~l~~~--gl~~~~~~~~~~~LS~G 155 (268)
T PRK10419 83 QRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERL-----ARASEMLRAV--DLDDSVLDKRPPQLSGG 155 (268)
T ss_pred HHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHH-----HHHHHHHHHc--CCChhHhhCCCccCChH
Confidence 346788999999984 443 599999865321 11111111 1112223322 4542 456678899999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEccCchhHhh-cCEEEEEECCEEEEecC
Q 001438 525 QKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGS 601 (1077)
Q Consensus 525 qkqri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~ 601 (1077)
||||++||||++.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+.. ||++++|++|++++.|+
T Consensus 156 e~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~ 235 (268)
T PRK10419 156 QLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVETQP 235 (268)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEeeeCC
Confidence 99999999999999999999999999999999999999988753 7899999999999975 99999999999999999
Q ss_pred hhHHhcCCCchHHH
Q 001438 602 HEELISNPNSAYAA 615 (1077)
Q Consensus 602 ~~~l~~~~~~~~~~ 615 (1077)
++++... .+.|..
T Consensus 236 ~~~~~~~-~~~~~~ 248 (268)
T PRK10419 236 VGDKLTF-SSPAGR 248 (268)
T ss_pred hhhccCC-CCHHHH
Confidence 9998764 454443
No 287
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=100.00 E-value=4.4e-39 Score=342.18 Aligned_cols=202 Identities=36% Similarity=0.520 Sum_probs=168.7
Q ss_pred EEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhee
Q 001438 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (1077)
Q Consensus 382 i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 461 (1077)
++++|++++|+. .++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+ .+++.++
T Consensus 1 ~~~~~l~~~~~~-----~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~--~~~~~i~ 73 (213)
T TIGR01277 1 LALDKVRYEYEH-----LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLA--PYQRPVS 73 (213)
T ss_pred CeEEeeeEEeCC-----cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCC--hhccceE
Confidence 368999999962 467999999999999999999999999999999999999999999999987543 3567899
Q ss_pred EEccCCCcccc-cHHHHHhcCC-CCC--C---HHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHH
Q 001438 462 LVNQEPALFAT-TIRENILYGK-DDA--T---MEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRA 534 (1077)
Q Consensus 462 ~v~Q~~~lf~~-ti~~ni~~~~-~~~--~---~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARa 534 (1077)
|++|+|.+|.. |++||+.++. +.. . .+++.++++.. |+.........+||||||||++||||
T Consensus 74 ~v~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LS~G~~qrl~lara 142 (213)
T TIGR01277 74 MLFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQV-----------GIADYLDRLPEQLSGGQRQRVALARC 142 (213)
T ss_pred EEeccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHc-----------CcHHHhhCCcccCCHHHHHHHHHHHH
Confidence 99999999875 9999998653 111 1 11122222222 23333455567899999999999999
Q ss_pred hccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEccCchhHhh-cCEEEEEECCEEEEecC
Q 001438 535 IVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGS 601 (1077)
Q Consensus 535 l~~~p~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~ 601 (1077)
++.+|+++||||||++||+.+.+.+.+.|+++. .++|+|++||+++.+.. ||++++|++|++++.|.
T Consensus 143 l~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 143 LVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred HhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEecC
Confidence 999999999999999999999999999999875 37899999999998865 99999999999999875
No 288
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.1e-39 Score=330.49 Aligned_cols=171 Identities=56% Similarity=0.886 Sum_probs=160.3
Q ss_pred EEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhee
Q 001438 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (1077)
Q Consensus 382 i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 461 (1077)
++++|++++|++. ..++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...+|++++
T Consensus 1 l~~~~l~~~~~~~-~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (171)
T cd03228 1 IEFKNVSFSYPGR-PKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIA 79 (171)
T ss_pred CEEEEEEEEcCCC-CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEE
Confidence 4789999999753 135899999999999999999999999999999999999999999999999998887778888999
Q ss_pred EEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccCCCE
Q 001438 462 LVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSI 541 (1077)
Q Consensus 462 ~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~p~i 541 (1077)
|++|++.+|+.|++||+ ||||||||++||||++.+|++
T Consensus 80 ~~~~~~~~~~~t~~e~l------------------------------------------LS~G~~~rl~la~al~~~p~l 117 (171)
T cd03228 80 YVPQDPFLFSGTIRENI------------------------------------------LSGGQRQRIAIARALLRDPPI 117 (171)
T ss_pred EEcCCchhccchHHHHh------------------------------------------hCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999997 999999999999999999999
Q ss_pred EEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhhcCEEEEEECCE
Q 001438 542 LLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRK 595 (1077)
Q Consensus 542 lllDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~~d~i~~l~~G~ 595 (1077)
+||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+..||++++|++|+
T Consensus 118 lllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~ 171 (171)
T cd03228 118 LILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRDADRIIVLDDGR 171 (171)
T ss_pred EEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEEEcCCC
Confidence 999999999999999999999998877899999999999998899999999985
No 289
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=7e-40 Score=309.22 Aligned_cols=194 Identities=31% Similarity=0.532 Sum_probs=168.1
Q ss_pred CcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhheeEEccCCCcccccHH
Q 001438 396 DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIR 475 (1077)
Q Consensus 396 ~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~ 475 (1077)
+.++|+|+||++.+||+++|.||||||||||++.++-+.+|++|++++.|++++.++++.+|++|+||.|.|.||.+||.
T Consensus 15 ~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~tVe 94 (223)
T COG4619 15 DAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTVE 94 (223)
T ss_pred CCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCccccccchh
Confidence 45699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCC---CCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCcCCCCC
Q 001438 476 ENILYGKD---DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALD 552 (1077)
Q Consensus 476 ~ni~~~~~---~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~p~illlDEpts~lD 552 (1077)
||+.|... ...+. ..+ .+++.... -.++.+..+..+||||+|||++|+|-|---|+||+|||||||||
T Consensus 95 DNlifP~~~r~rr~dr--~aa------~~llar~~-l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsALD 165 (223)
T COG4619 95 DNLIFPWQIRNRRPDR--AAA------LDLLARFA-LPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALD 165 (223)
T ss_pred hccccchHHhccCCCh--HHH------HHHHHHcC-CchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhcC
Confidence 99998741 11111 111 12222221 13456777888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHh--CCCeEEEEccCchh-HhhcCEEEEEECCEEEE
Q 001438 553 AESENSVQEALDRVM--VGRTTVVVAHRLST-IRNADVIAVVQGRKIVK 598 (1077)
Q Consensus 553 ~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~-~~~~d~i~~l~~G~i~~ 598 (1077)
+.+.+.|.+.|.++. ++..++.|||+-.. ++.+||++-+..|++-+
T Consensus 166 ~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~~G~~~~ 214 (223)
T COG4619 166 ESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQPGHAGE 214 (223)
T ss_pred hhhHHHHHHHHHHHhhhhceEEEEEecChHHHhhhhheEEEeccCcccc
Confidence 999999999998874 57899999999987 78899999999998643
No 290
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.9e-39 Score=338.77 Aligned_cols=191 Identities=25% Similarity=0.363 Sum_probs=163.4
Q ss_pred cEEEEeEEEEcCCC-CCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccC---CCccEEEECCeeCCCCCHHHH
Q 001438 381 HIEFKDVSFCYPSR-PDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYE---PLSGEILLDGNNIKGLDLKWL 456 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~-~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~---~~~G~i~~~g~~~~~~~~~~~ 456 (1077)
.+.++|++|.|+.. .+.++|+|+||++++||+++|+||||||||||+++|+|+++ |++|+|.++|+++...+ ...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~-~~~ 81 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFA-EKY 81 (202)
T ss_pred eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccch-hhh
Confidence 36899999999854 34579999999999999999999999999999999999999 89999999999987654 356
Q ss_pred hhheeEEccCCCcccc-cHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHh
Q 001438 457 RQQIGLVNQEPALFAT-TIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAI 535 (1077)
Q Consensus 457 r~~i~~v~Q~~~lf~~-ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal 535 (1077)
+++++|++|++.+|+. |++||+.++... . ..+....||||||||++||||+
T Consensus 82 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~----------~------------------~~~~~~~LS~Ge~qrl~laral 133 (202)
T cd03233 82 PGEIIYVSEEDVHFPTLTVRETLDFALRC----------K------------------GNEFVRGISGGERKRVSIAEAL 133 (202)
T ss_pred cceEEEEecccccCCCCcHHHHHhhhhhh----------c------------------cccchhhCCHHHHHHHHHHHHH
Confidence 7789999999988875 999999765210 0 1234568999999999999999
Q ss_pred ccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEcc-CchhHh-hcCEEEEEECCEEEEec
Q 001438 536 VKNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAH-RLSTIR-NADVIAVVQGRKIVKTG 600 (1077)
Q Consensus 536 ~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~vtH-~~~~~~-~~d~i~~l~~G~i~~~g 600 (1077)
+.+|+++||||||++||+++++.+.+.|+++.+ +.|+|+++| +.+.+. .||++++|++|++++.|
T Consensus 134 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 134 VSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred hhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 999999999999999999999999999998753 567676655 456664 59999999999998764
No 291
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.7e-39 Score=330.66 Aligned_cols=170 Identities=36% Similarity=0.617 Sum_probs=157.0
Q ss_pred EEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhee
Q 001438 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (1077)
Q Consensus 382 i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 461 (1077)
++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+ ..+|+.++
T Consensus 1 l~~~~l~~~~~~---~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 76 (173)
T cd03230 1 IEVRNLSKRYGK---KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEP-EEVKRRIG 76 (173)
T ss_pred CEEEEEEEEECC---eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccch-HhhhccEE
Confidence 468999999964 25899999999999999999999999999999999999999999999999987665 56778899
Q ss_pred EEccCCCcccc-cHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccCCC
Q 001438 462 LVNQEPALFAT-TIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPS 540 (1077)
Q Consensus 462 ~v~Q~~~lf~~-ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~p~ 540 (1077)
|++|++.+|++ |++||+. ||||||||++||||++.+|+
T Consensus 77 ~~~q~~~~~~~~tv~~~~~-----------------------------------------LS~G~~qrv~laral~~~p~ 115 (173)
T cd03230 77 YLPEEPSLYENLTVRENLK-----------------------------------------LSGGMKQRLALAQALLHDPE 115 (173)
T ss_pred EEecCCccccCCcHHHHhh-----------------------------------------cCHHHHHHHHHHHHHHcCCC
Confidence 99999999886 9999974 99999999999999999999
Q ss_pred EEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHh-hcCEEEEEECCEE
Q 001438 541 ILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIR-NADVIAVVQGRKI 596 (1077)
Q Consensus 541 illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~-~~d~i~~l~~G~i 596 (1077)
++||||||++||+.+.+.+.+.|+++. +|.|+|++||+.+.+. .||++++|++|++
T Consensus 116 illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 116 LLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173 (173)
T ss_pred EEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEeCCCC
Confidence 999999999999999999999999874 4789999999999887 5999999999974
No 292
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=5.5e-38 Score=384.97 Aligned_cols=206 Identities=25% Similarity=0.391 Sum_probs=156.1
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhe
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 460 (1077)
.|+++|++++|++ .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.. .+
T Consensus 3 ~l~i~~ls~~~~~---~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~-----------~~ 68 (635)
T PRK11147 3 LISIHGAWLSFSD---APLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDL-----------IV 68 (635)
T ss_pred EEEEeeEEEEeCC---ceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCC-----------EE
Confidence 3889999999964 359999999999999999999999999999999999999999999998731 37
Q ss_pred eEEccCCCc-ccccHHHHHhcCCCC------------------CCHHHHHHHHH-------------HHhHHHHHhcCcc
Q 001438 461 GLVNQEPAL-FATTIRENILYGKDD------------------ATMEEITRAAK-------------LSEAMSFISNLPE 508 (1077)
Q Consensus 461 ~~v~Q~~~l-f~~ti~~ni~~~~~~------------------~~~~~~~~~~~-------------~~~~~~~i~~l~~ 508 (1077)
+|++|++.. ..+++.+++..+... ...+.+..... .....+.++.+
T Consensus 69 ~~l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-- 146 (635)
T PRK11147 69 ARLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQL-- 146 (635)
T ss_pred EEeccCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhC--
Confidence 888887643 235666665322100 00000000000 00111122222
Q ss_pred chhhhhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhh-cCE
Q 001438 509 RFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADV 587 (1077)
Q Consensus 509 g~~t~~~~~g~~LSgGqkqri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~-~d~ 587 (1077)
|+. ......+||||||||++|||||+.+|+||||||||++||+++...+.+.|+++ +.|+|+|||+...+.. ||+
T Consensus 147 gl~--~~~~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~--~~tvlivsHd~~~l~~~~d~ 222 (635)
T PRK11147 147 GLD--PDAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTF--QGSIIFISHDRSFIRNMATR 222 (635)
T ss_pred CCC--CCCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhC--CCEEEEEeCCHHHHHHhcCe
Confidence 221 13456789999999999999999999999999999999999999999999877 3599999999999876 999
Q ss_pred EEEEECCEEEE-ecChhHHh
Q 001438 588 IAVVQGRKIVK-TGSHEELI 606 (1077)
Q Consensus 588 i~~l~~G~i~~-~g~~~~l~ 606 (1077)
|++|++|+++. .|++++.+
T Consensus 223 i~~L~~G~i~~~~g~~~~~~ 242 (635)
T PRK11147 223 IVDLDRGKLVSYPGNYDQYL 242 (635)
T ss_pred EEEEECCEEEEecCCHHHHH
Confidence 99999999974 46666554
No 293
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=100.00 E-value=9e-38 Score=364.78 Aligned_cols=207 Identities=30% Similarity=0.484 Sum_probs=162.4
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhe
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 460 (1077)
.|.++|++++|++ +++++|+||++.+|+++||||+||||||||+++|.|...|++|+|...+. -++
T Consensus 3 ~i~~~~ls~~~g~---~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~-----------~~v 68 (530)
T COG0488 3 MITLENLSLAYGD---RPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKG-----------LRV 68 (530)
T ss_pred eEEEeeeEEeeCC---ceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCC-----------ceE
Confidence 4889999999964 46999999999999999999999999999999999999999999998762 159
Q ss_pred eEEccCCCcccc-cHHHHHhcCCCCCCH--HHHHHHH------------HH-------------HhHHHHHhcCccchhh
Q 001438 461 GLVNQEPALFAT-TIRENILYGKDDATM--EEITRAA------------KL-------------SEAMSFISNLPERFET 512 (1077)
Q Consensus 461 ~~v~Q~~~lf~~-ti~~ni~~~~~~~~~--~~~~~~~------------~~-------------~~~~~~i~~l~~g~~t 512 (1077)
+|++|++.+.+. |++|.+..+...... .+...+. ++ +.+...+..| |+..
T Consensus 69 ~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gL--g~~~ 146 (530)
T COG0488 69 GYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGL--GFPD 146 (530)
T ss_pred EEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcC--CCCc
Confidence 999999999876 999999877532110 0000000 00 0111112222 1221
Q ss_pred hhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhh-cCEEEEE
Q 001438 513 QVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVV 591 (1077)
Q Consensus 513 ~~~~~g~~LSgGqkqri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~-~d~i~~l 591 (1077)
. .....+||||||.|++|||||+.+||+|||||||++||.++..-+.+.|.+. +| |+|+|||+-.++.. |++|+-+
T Consensus 147 ~-~~~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~-~g-tviiVSHDR~FLd~V~t~I~~l 223 (530)
T COG0488 147 E-DRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY-PG-TVIVVSHDRYFLDNVATHILEL 223 (530)
T ss_pred c-cCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC-CC-cEEEEeCCHHHHHHHhhheEEe
Confidence 1 3345689999999999999999999999999999999999999999999865 45 99999999999987 9999999
Q ss_pred ECCEEE-EecChhHHh
Q 001438 592 QGRKIV-KTGSHEELI 606 (1077)
Q Consensus 592 ~~G~i~-~~g~~~~l~ 606 (1077)
++|++. ..|+++..+
T Consensus 224 d~g~l~~y~Gny~~~~ 239 (530)
T COG0488 224 DRGKLTPYKGNYSSYL 239 (530)
T ss_pred cCCceeEecCCHHHHH
Confidence 999875 345554443
No 294
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.3e-39 Score=331.79 Aligned_cols=172 Identities=46% Similarity=0.695 Sum_probs=158.4
Q ss_pred EEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCC--HHHHhhh
Q 001438 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLD--LKWLRQQ 459 (1077)
Q Consensus 382 i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~--~~~~r~~ 459 (1077)
|+++|++++|++ .++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.+.+ ...+++.
T Consensus 1 i~~~~l~~~~~~---~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (178)
T cd03229 1 LELKNVSKRYGQ---KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRR 77 (178)
T ss_pred CEEEEEEEEECC---eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhc
Confidence 478999999964 35899999999999999999999999999999999999999999999999998775 5667889
Q ss_pred eeEEccCCCcccc-cHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccC
Q 001438 460 IGLVNQEPALFAT-TIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKN 538 (1077)
Q Consensus 460 i~~v~Q~~~lf~~-ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~ 538 (1077)
++|++|+|.+|.. |++||+.+. ||||||||++||||++++
T Consensus 78 i~~~~q~~~~~~~~t~~~~l~~~---------------------------------------lS~G~~qr~~la~al~~~ 118 (178)
T cd03229 78 IGMVFQDFALFPHLTVLENIALG---------------------------------------LSGGQQQRVALARALAMD 118 (178)
T ss_pred EEEEecCCccCCCCCHHHheeec---------------------------------------CCHHHHHHHHHHHHHHCC
Confidence 9999999998865 999998653 999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEccCchhHhh-cCEEEEEECCE
Q 001438 539 PSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRN-ADVIAVVQGRK 595 (1077)
Q Consensus 539 p~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~vtH~~~~~~~-~d~i~~l~~G~ 595 (1077)
|+++||||||++||+.++..+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|+
T Consensus 119 p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 119 PDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178 (178)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCC
Confidence 999999999999999999999999988754 6999999999999984 99999999985
No 295
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=100.00 E-value=9.6e-39 Score=349.22 Aligned_cols=225 Identities=24% Similarity=0.417 Sum_probs=181.7
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCee-----CCCCCHHH
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNN-----IKGLDLKW 455 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~-----~~~~~~~~ 455 (1077)
.|+++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|++ +...+...
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (253)
T TIGR02323 3 LLQVSGLSKSYGG---GKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAE 79 (253)
T ss_pred eEEEeeeEEEeCC---ceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHH
Confidence 5899999999964 358999999999999999999999999999999999999999999999987 76665543
Q ss_pred ----HhhheeEEccCCC--cc-cccHHHHHhcCC---CCCCHHHHHHHHHHHhHHHHHhcCccchh-hhhcCCCCCCChH
Q 001438 456 ----LRQQIGLVNQEPA--LF-ATTIRENILYGK---DDATMEEITRAAKLSEAMSFISNLPERFE-TQVGERGIQLSGG 524 (1077)
Q Consensus 456 ----~r~~i~~v~Q~~~--lf-~~ti~~ni~~~~---~~~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~~~~~g~~LSgG 524 (1077)
+++.++|++|++. ++ ..|+.+|+.+.. ......+.. ....++++.+. ++ +..+..+.+||||
T Consensus 80 ~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-----~~~~~~l~~l~--l~~~~~~~~~~~LSgG 152 (253)
T TIGR02323 80 RRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIR-----AAAHDWLEEVE--IDPTRIDDLPRAFSGG 152 (253)
T ss_pred HHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHH-----HHHHHHHHHcC--CChhhhhcCchhcCHH
Confidence 2457999999985 33 348888885421 101111111 12223344442 32 4567778899999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEccCchhHhh-cCEEEEEECCEEEEecC
Q 001438 525 QKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGS 601 (1077)
Q Consensus 525 qkqri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~ 601 (1077)
||||++||||++.+|++|||||||++||+.+.+.+.+.|++.. .+.|+|++||+++.+.. ||++++|++|++++.|+
T Consensus 153 ~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~~~~~ 232 (253)
T TIGR02323 153 MQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGL 232 (253)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEECC
Confidence 9999999999999999999999999999999999999998864 38999999999999875 99999999999999999
Q ss_pred hhHHhcCCCchHHH
Q 001438 602 HEELISNPNSAYAA 615 (1077)
Q Consensus 602 ~~~l~~~~~~~~~~ 615 (1077)
++++..++...|.+
T Consensus 233 ~~~~~~~~~~~~~~ 246 (253)
T TIGR02323 233 TDQVLDDPQHPYTQ 246 (253)
T ss_pred HHHHhcCCCCHHHH
Confidence 99987654445543
No 296
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.5e-39 Score=315.10 Aligned_cols=213 Identities=27% Similarity=0.465 Sum_probs=181.5
Q ss_pred EEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhee
Q 001438 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (1077)
Q Consensus 382 i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 461 (1077)
|+.+|++++-.+ +.+|+++||++++||.++|+||||+|||||++.|.|++.|++|++.++|+++.++...++.++-+
T Consensus 2 i~a~nls~~~~G---r~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~ra 78 (259)
T COG4559 2 IRAENLSYSLAG---RRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRA 78 (259)
T ss_pred eeeeeeEEEeec---ceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhh
Confidence 788999998754 45899999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCCc-ccccHHHHHhcCCCCC----C--H-HHHH-HHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHH
Q 001438 462 LVNQEPAL-FATTIRENILYGKDDA----T--M-EEIT-RAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAIS 532 (1077)
Q Consensus 462 ~v~Q~~~l-f~~ti~~ni~~~~~~~----~--~-~~~~-~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lA 532 (1077)
++||+..+ |+.|++|-+.+|.-.. . . +++. ++...+.+ ..+ -+..-..||||||||+.+|
T Consensus 79 VlpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~----~~l-------a~R~y~~LSGGEqQRVqlA 147 (259)
T COG4559 79 VLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDL----SGL-------AGRDYRTLSGGEQQRVQLA 147 (259)
T ss_pred hcccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcCh----hhh-------hccchhhcCchHHHHHHHH
Confidence 99999887 9999999999997221 1 1 2222 22222222 222 2334458999999999999
Q ss_pred HHhcc------CCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhH-hhcCEEEEEECCEEEEecChhH
Q 001438 533 RAIVK------NPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTI-RNADVIAVVQGRKIVKTGSHEE 604 (1077)
Q Consensus 533 Ral~~------~p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~-~~~d~i~~l~~G~i~~~g~~~~ 604 (1077)
|.|.+ ++++|+||||||+||...++.+++..+++. .|..|+.|-||++.. .+||||++|.+||++..|++++
T Consensus 148 RvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~YaDrivll~~Grv~a~g~p~~ 227 (259)
T COG4559 148 RVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQD 227 (259)
T ss_pred HHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHhhheeeeeeCCeEeecCCHHH
Confidence 99976 456999999999999999999999998874 688999999999986 5699999999999999999999
Q ss_pred HhcC
Q 001438 605 LISN 608 (1077)
Q Consensus 605 l~~~ 608 (1077)
.+..
T Consensus 228 vlt~ 231 (259)
T COG4559 228 VLTD 231 (259)
T ss_pred hcCH
Confidence 8864
No 297
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=100.00 E-value=6.6e-39 Score=342.61 Aligned_cols=208 Identities=31% Similarity=0.477 Sum_probs=173.0
Q ss_pred EEEEeEEEEcCCCC-CcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHH---HHh
Q 001438 382 IEFKDVSFCYPSRP-DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLK---WLR 457 (1077)
Q Consensus 382 i~~~~v~~~y~~~~-~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~---~~r 457 (1077)
++++|+++.|++.. ...+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+.. ..+
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLR 81 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHH
Confidence 78999999996421 24689999999999999999999999999999999999999999999999999776643 467
Q ss_pred hheeEEccCCCccc-ccHHHHHhcCCC---CCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHH
Q 001438 458 QQIGLVNQEPALFA-TTIRENILYGKD---DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISR 533 (1077)
Q Consensus 458 ~~i~~v~Q~~~lf~-~ti~~ni~~~~~---~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lAR 533 (1077)
+.++|+||++.+|. .|+.||+.++.. ....++..+. ..+.++.+ |++......+.+||||||||++|||
T Consensus 82 ~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~lS~G~~qrv~lar 154 (220)
T TIGR02982 82 RNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARER-----ARAMLEAV--GLGDHLDYYPHNLSGGQKQRVAIAR 154 (220)
T ss_pred hheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHH-----HHHHHHHc--CChhhhhcChhhCCHHHHHHHHHHH
Confidence 88999999999987 599999987532 1122222211 11223333 3444556667799999999999999
Q ss_pred HhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEccCchhHhhcCEEEEEECCEE
Q 001438 534 AIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRNADVIAVVQGRKI 596 (1077)
Q Consensus 534 al~~~p~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~~~~d~i~~l~~G~i 596 (1077)
|++.+|+++||||||++||+++++.+.+.|+++. +++|+|++||+++....||+|++|++|++
T Consensus 155 al~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 155 ALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRILDVADRIVHMEDGKL 219 (220)
T ss_pred HHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhhCCEEEEEECCEE
Confidence 9999999999999999999999999999998875 37999999999997777999999999986
No 298
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9.3e-39 Score=340.11 Aligned_cols=204 Identities=31% Similarity=0.462 Sum_probs=168.3
Q ss_pred EEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCC----CHHHHhh
Q 001438 383 EFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGL----DLKWLRQ 458 (1077)
Q Consensus 383 ~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~----~~~~~r~ 458 (1077)
++ |++++|++. .+ |+||++++ |+++|+||||||||||+++|+|+++|++|+|.++|.++... +....++
T Consensus 3 ~~-~l~~~~~~~---~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 75 (214)
T cd03297 3 CV-DIEKRLPDF---TL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQR 75 (214)
T ss_pred ee-eeeEecCCe---ee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhh
Confidence 44 899999743 34 99999999 99999999999999999999999999999999999988643 2335677
Q ss_pred heeEEccCCCcccc-cHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhcc
Q 001438 459 QIGLVNQEPALFAT-TIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVK 537 (1077)
Q Consensus 459 ~i~~v~Q~~~lf~~-ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~ 537 (1077)
+++|++|++.+|+. |++||+.++......+... ....++++.+ |++......+.+||||||||++||||++.
T Consensus 76 ~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~al~~ 148 (214)
T cd03297 76 KIGLVFQQYALFPHLNVRENLAFGLKRKRNREDR-----ISVDELLDLL--GLDHLLNRYPAQLSGGEKQRVALARALAA 148 (214)
T ss_pred cEEEEecCCccCCCCCHHHHHHHHHhhCCHHHHH-----HHHHHHHHHc--CCHhHhhcCcccCCHHHHHHHHHHHHHhc
Confidence 89999999999865 9999998764322211111 1112223333 45555667788999999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-C-CCeEEEEccCchhHhh-cCEEEEEECCEEEEec
Q 001438 538 NPSILLLDEATSALDAESENSVQEALDRVM-V-GRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTG 600 (1077)
Q Consensus 538 ~p~illlDEpts~lD~~~~~~i~~~l~~~~-~-~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g 600 (1077)
+|+++||||||++||+.+.+.+.+.|+++. + ++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 149 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 149 QPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999999998874 3 7999999999999864 9999999999998765
No 299
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=100.00 E-value=1.5e-38 Score=347.34 Aligned_cols=217 Identities=25% Similarity=0.402 Sum_probs=175.2
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCC----CccEEEECCeeCCCCCHHHH
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEP----LSGEILLDGNNIKGLDLKWL 456 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~----~~G~i~~~g~~~~~~~~~~~ 456 (1077)
.++++|++++| + .++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|+++... +..
T Consensus 4 ~l~~~~l~~~~-~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~--~~~ 77 (254)
T PRK10418 4 QIELRNIALQA-A---QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPC--ALR 77 (254)
T ss_pred EEEEeCeEEEe-c---cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeecccc--ccc
Confidence 58999999999 2 2589999999999999999999999999999999999999 999999999988632 223
Q ss_pred hhheeEEccCCC-ccc--ccHHHHHhcCC----CCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHH
Q 001438 457 RQQIGLVNQEPA-LFA--TTIRENILYGK----DDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRI 529 (1077)
Q Consensus 457 r~~i~~v~Q~~~-lf~--~ti~~ni~~~~----~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri 529 (1077)
++.++|++|++. .|. .|+.+|+.+.. .....+++.+.++. + .+++ .++.++....+||||||||+
T Consensus 78 ~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~------~-~l~~-~~~~~~~~~~~LS~Gq~qrv 149 (254)
T PRK10418 78 GRKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEA------V-GLEN-AARVLKLYPFEMSGGMLQRM 149 (254)
T ss_pred cceEEEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHH------c-CCCC-hhhhhhcCCcccCHHHHHHH
Confidence 457999999985 343 48888875421 11111122222221 1 1211 12345677889999999999
Q ss_pred HHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEccCchhHh-hcCEEEEEECCEEEEecChhHHh
Q 001438 530 AISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIR-NADVIAVVQGRKIVKTGSHEELI 606 (1077)
Q Consensus 530 ~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~ 606 (1077)
+||||++.+|++|||||||++||+.+.+.+.+.|+++. .++|+|++||+++.+. .||++++|++|++++.|+++++.
T Consensus 150 ~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 229 (254)
T PRK10418 150 MIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLF 229 (254)
T ss_pred HHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 99999999999999999999999999999999998874 3789999999999986 49999999999999999999997
Q ss_pred cCCCc
Q 001438 607 SNPNS 611 (1077)
Q Consensus 607 ~~~~~ 611 (1077)
+++..
T Consensus 230 ~~~~~ 234 (254)
T PRK10418 230 NAPKH 234 (254)
T ss_pred hCCCC
Confidence 76443
No 300
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=100.00 E-value=8.4e-39 Score=333.97 Aligned_cols=183 Identities=31% Similarity=0.531 Sum_probs=161.9
Q ss_pred cEEEEeEEEEcCCC---CCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhccc--CCCccEEEECCeeCCCCCHHH
Q 001438 381 HIEFKDVSFCYPSR---PDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFY--EPLSGEILLDGNNIKGLDLKW 455 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~---~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~--~~~~G~i~~~g~~~~~~~~~~ 455 (1077)
.++++|++++|++. .+.++++|+||++++||+++|+||||||||||+++|+|++ +|++|+|.+||+++.. ..
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~---~~ 79 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDK---RS 79 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCch---Hh
Confidence 48999999999742 0246999999999999999999999999999999999999 9999999999998864 36
Q ss_pred HhhheeEEccCCCcccc-cHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHH
Q 001438 456 LRQQIGLVNQEPALFAT-TIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRA 534 (1077)
Q Consensus 456 ~r~~i~~v~Q~~~lf~~-ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARa 534 (1077)
++++++|++|++.+|.. |++||+.++.. +. .||||||||++||||
T Consensus 80 ~~~~i~~~~q~~~~~~~~t~~~~i~~~~~-------------------~~---------------~LS~G~~qrv~lara 125 (194)
T cd03213 80 FRKIIGYVPQDDILHPTLTVRETLMFAAK-------------------LR---------------GLSGGERKRVSIALE 125 (194)
T ss_pred hhheEEEccCcccCCCCCcHHHHHHHHHH-------------------hc---------------cCCHHHHHHHHHHHH
Confidence 67889999999998875 99999965310 00 799999999999999
Q ss_pred hccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCch-hHh-hcCEEEEEECCEEEEec
Q 001438 535 IVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLS-TIR-NADVIAVVQGRKIVKTG 600 (1077)
Q Consensus 535 l~~~p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~-~~~-~~d~i~~l~~G~i~~~g 600 (1077)
++.+|+++||||||++||+.+.+.+.+.|+++. +++|+|++||+++ .+. .||++++|++|++++.|
T Consensus 126 l~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~~ 194 (194)
T cd03213 126 LVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194 (194)
T ss_pred HHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEEEecC
Confidence 999999999999999999999999999998875 4899999999997 454 59999999999998754
No 301
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=5.6e-38 Score=383.73 Aligned_cols=219 Identities=25% Similarity=0.319 Sum_probs=158.7
Q ss_pred ccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhccc---CCCccEEEECCeeCCCCC--H-
Q 001438 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFY---EPLSGEILLDGNNIKGLD--L- 453 (1077)
Q Consensus 380 ~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~---~~~~G~i~~~g~~~~~~~--~- 453 (1077)
..|+++|++++|++ .++|+|+||+|++|+++|||||||||||||+++|+|.. .|.+|+|.+.++++...+ .
T Consensus 176 ~~I~i~nls~~y~~---~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~ 252 (718)
T PLN03073 176 KDIHMENFSISVGG---RDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTAL 252 (718)
T ss_pred eeEEEceEEEEeCC---CEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHH
Confidence 45999999999964 35999999999999999999999999999999999864 588999976555432111 1
Q ss_pred -----------HHHhhheeEEccCCCcccccHHHHHhcCCC-CCCHHH----HHHHHHHHh----------HHHHHhcCc
Q 001438 454 -----------KWLRQQIGLVNQEPALFATTIRENILYGKD-DATMEE----ITRAAKLSE----------AMSFISNLP 507 (1077)
Q Consensus 454 -----------~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~-~~~~~~----~~~~~~~~~----------~~~~i~~l~ 507 (1077)
..+++.++|++|+|.+...+..+|...... ....++ +.++.+..+ +...+..+
T Consensus 253 ~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~l- 331 (718)
T PLN03073 253 QCVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGL- 331 (718)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHC-
Confidence 113455889999887654455455422111 011111 111111110 11111111
Q ss_pred cchh-hhhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhh-c
Q 001438 508 ERFE-TQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-A 585 (1077)
Q Consensus 508 ~g~~-t~~~~~g~~LSgGqkqri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~-~ 585 (1077)
|++ ........+||||||||++|||||+.+|++|||||||++||+.+...+.+.|+++ +.|+|+|||+++.+.. |
T Consensus 332 -gl~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~~tviivsHd~~~l~~~~ 408 (718)
T PLN03073 332 -SFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW--PKTFIVVSHAREFLNTVV 408 (718)
T ss_pred -CCChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHhC
Confidence 221 1223445689999999999999999999999999999999999999999999876 6899999999999876 9
Q ss_pred CEEEEEECCEEE-EecChhHH
Q 001438 586 DVIAVVQGRKIV-KTGSHEEL 605 (1077)
Q Consensus 586 d~i~~l~~G~i~-~~g~~~~l 605 (1077)
|+|++|++|++. ..|++++.
T Consensus 409 d~i~~l~~g~i~~~~g~~~~~ 429 (718)
T PLN03073 409 TDILHLHGQKLVTYKGDYDTF 429 (718)
T ss_pred CEEEEEECCEEEEeCCCHHHH
Confidence 999999999996 56666554
No 302
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=3.9e-39 Score=305.19 Aligned_cols=211 Identities=29% Similarity=0.411 Sum_probs=175.8
Q ss_pred cEEEEeEEEEcCCC-CCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHH---H
Q 001438 381 HIEFKDVSFCYPSR-PDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKW---L 456 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~-~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~---~ 456 (1077)
-|+++++++.-++. ....+|++++|.|++||.++||||||||||||+.++.|+-+|++|+|.+.|+++.+++.+. +
T Consensus 6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~ 85 (228)
T COG4181 6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAAL 85 (228)
T ss_pred eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHh
Confidence 47888888877543 2356999999999999999999999999999999999999999999999999999998653 4
Q ss_pred h-hheeEEccCCCcccc-cHHHHHhcCCCCCC---HHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHH
Q 001438 457 R-QQIGLVNQEPALFAT-TIRENILYGKDDAT---MEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAI 531 (1077)
Q Consensus 457 r-~~i~~v~Q~~~lf~~-ti~~ni~~~~~~~~---~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~l 531 (1077)
| +++|+|+|...|.+. |-.||+..+..... .+....|.++ ++.. |+...+...+.+||||++||++|
T Consensus 86 R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~l------L~~v--GLg~Rl~HyP~qLSGGEQQRVAi 157 (228)
T COG4181 86 RARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKAL------LEAV--GLGKRLTHYPAQLSGGEQQRVAL 157 (228)
T ss_pred hccceeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHH------HHHh--CcccccccCccccCchHHHHHHH
Confidence 4 579999999988755 99999987652211 1111122221 2221 55556677788999999999999
Q ss_pred HHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHH--hCCCeEEEEccCchhHhhcCEEEEEECCEEEEe
Q 001438 532 SRAIVKNPSILLLDEATSALDAESENSVQEALDRV--MVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKT 599 (1077)
Q Consensus 532 ARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~--~~~~t~i~vtH~~~~~~~~d~i~~l~~G~i~~~ 599 (1077)
|||+...|+||+-||||-+||.+|.++|.+.+-.+ ..|.|.|+|||+.....+|||++.|.+|++++.
T Consensus 158 ARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~Rc~R~~r~~~G~l~~~ 227 (228)
T COG4181 158 ARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAARCDRQLRLRSGRLVED 227 (228)
T ss_pred HHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHhhhheeeeecceeccC
Confidence 99999999999999999999999999999988665 358999999999999999999999999999863
No 303
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=100.00 E-value=1.1e-38 Score=341.70 Aligned_cols=205 Identities=27% Similarity=0.444 Sum_probs=171.2
Q ss_pred EEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhee
Q 001438 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (1077)
Q Consensus 382 i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 461 (1077)
++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.... ++.++
T Consensus 1 l~l~~v~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~----~~~~~ 73 (223)
T TIGR03740 1 LETKNLSKRFGK---QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKD----LHKIG 73 (223)
T ss_pred CEEEeEEEEECC---EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccc----cccEE
Confidence 478999999974 35899999999999999999999999999999999999999999999999875322 24799
Q ss_pred EEccCCCccc-ccHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccC
Q 001438 462 LVNQEPALFA-TTIRENILYGKD--DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKN 538 (1077)
Q Consensus 462 ~v~Q~~~lf~-~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~ 538 (1077)
|+||++.+|. .|++||+.++.. ....+++.+.++.. |++........+||||||||++||||++.+
T Consensus 74 ~~~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LS~G~~~rv~laral~~~ 142 (223)
T TIGR03740 74 SLIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIV-----------DLTNTGKKKAKQFSLGMKQRLGIAIALLNH 142 (223)
T ss_pred EEcCCCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHc-----------CCcHHHhhhHhhCCHHHHHHHHHHHHHhcC
Confidence 9999999886 499999976431 11223332222221 222233445678999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHh-hcCEEEEEECCEEEEecChhH
Q 001438 539 PSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIR-NADVIAVVQGRKIVKTGSHEE 604 (1077)
Q Consensus 539 p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~ 604 (1077)
|+++||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+. .||+|++|++|++++.|++++
T Consensus 143 p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 210 (223)
T TIGR03740 143 PKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGYQGKINK 210 (223)
T ss_pred CCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEecChhh
Confidence 99999999999999999999999998875 4789999999999986 599999999999999998765
No 304
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=100.00 E-value=2e-38 Score=333.04 Aligned_cols=185 Identities=30% Similarity=0.450 Sum_probs=163.1
Q ss_pred EEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcc--cCCCccEEEECCeeCCCCCHHHH-hh
Q 001438 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERF--YEPLSGEILLDGNNIKGLDLKWL-RQ 458 (1077)
Q Consensus 382 i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~--~~~~~G~i~~~g~~~~~~~~~~~-r~ 458 (1077)
++++|++++|++ .++++|+||++++||+++|+||||||||||+++|+|+ ++|++|+|.+||+++.+.+.... |.
T Consensus 1 l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~ 77 (200)
T cd03217 1 LEIKDLHVSVGG---KEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARL 77 (200)
T ss_pred CeEEEEEEEeCC---EEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhC
Confidence 478999999973 3599999999999999999999999999999999999 58999999999999988776554 45
Q ss_pred heeEEccCCCcccc-cHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhcc
Q 001438 459 QIGLVNQEPALFAT-TIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVK 537 (1077)
Q Consensus 459 ~i~~v~Q~~~lf~~-ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~ 537 (1077)
+++|+||++.+|++ ++++|+ .. ...+||||||||++||||++.
T Consensus 78 ~i~~v~q~~~~~~~~~~~~~l-------------------------~~-----------~~~~LS~G~~qrv~laral~~ 121 (200)
T cd03217 78 GIFLAFQYPPEIPGVKNADFL-------------------------RY-----------VNEGFSGGEKKRNEILQLLLL 121 (200)
T ss_pred cEEEeecChhhccCccHHHHH-------------------------hh-----------ccccCCHHHHHHHHHHHHHhc
Confidence 69999999998876 666655 00 113799999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHh--hcCEEEEEECCEEEEecChhHHh
Q 001438 538 NPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIR--NADVIAVVQGRKIVKTGSHEELI 606 (1077)
Q Consensus 538 ~p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~--~~d~i~~l~~G~i~~~g~~~~l~ 606 (1077)
+|+++||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+. .||++++|++|++++.| +.|+.
T Consensus 122 ~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~~-~~~~~ 192 (200)
T cd03217 122 EPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVKSG-DKELA 192 (200)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhhCCEEEEEECCEEEEEc-cHHHH
Confidence 999999999999999999999999998875 4789999999999987 69999999999999999 44454
No 305
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=2.3e-38 Score=337.51 Aligned_cols=226 Identities=31% Similarity=0.495 Sum_probs=188.9
Q ss_pred cccEEEEeEEEEcCCCC--------CcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCC
Q 001438 379 SGHIEFKDVSFCYPSRP--------DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKG 450 (1077)
Q Consensus 379 ~~~i~~~~v~~~y~~~~--------~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~ 450 (1077)
+.-++.+|+...|+-++ ...+.+++||++++||.+||||+||||||||-.+|+|+.++. |+|.++|+++..
T Consensus 274 ~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~ 352 (534)
T COG4172 274 PVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDG 352 (534)
T ss_pred CceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCccccc
Confidence 34589999999987432 235789999999999999999999999999999999999887 999999999999
Q ss_pred CCHHH---HhhheeEEccCCCc-c-c-ccHHHHHhcCC----CCCCH----HHHHHHHHHHhHHHHHhcCccchhh-hhc
Q 001438 451 LDLKW---LRQQIGLVNQEPAL-F-A-TTIRENILYGK----DDATM----EEITRAAKLSEAMSFISNLPERFET-QVG 515 (1077)
Q Consensus 451 ~~~~~---~r~~i~~v~Q~~~l-f-~-~ti~~ni~~~~----~~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t-~~~ 515 (1077)
++.++ +|+++-.|+|||+= + + .||.+-|.-|. +..+. +.+.+|++-+ |+|- ..+
T Consensus 353 ~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EV-----------GLDp~~r~ 421 (534)
T COG4172 353 LSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEV-----------GLDPATRN 421 (534)
T ss_pred cChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHc-----------CCChhHhh
Confidence 88765 57899999999972 3 2 48888776653 23222 2233333222 2322 345
Q ss_pred CCCCCCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEccCchhHhh-cCEEEEEE
Q 001438 516 ERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQ 592 (1077)
Q Consensus 516 ~~g~~LSgGqkqri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~~~-~d~i~~l~ 592 (1077)
..+..+|||||||||||||++-+|++++|||||||||...+.+|.+.|+++. .+-+-++|||++..++. ||+|+||+
T Consensus 422 RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~ 501 (534)
T COG4172 422 RYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMR 501 (534)
T ss_pred cCCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceEEEEe
Confidence 6778999999999999999999999999999999999999999999999874 57899999999999987 99999999
Q ss_pred CCEEEEecChhHHhcCCCchHHHH
Q 001438 593 GRKIVKTGSHEELISNPNSAYAAL 616 (1077)
Q Consensus 593 ~G~i~~~g~~~~l~~~~~~~~~~~ 616 (1077)
+|+|+|+|+.+++.++|...|.+-
T Consensus 502 ~GkiVE~G~~~~if~~P~~~YT~~ 525 (534)
T COG4172 502 DGKIVEQGPTEAVFANPQHEYTRA 525 (534)
T ss_pred CCEEeeeCCHHHHhcCCCcHHHHH
Confidence 999999999999999999888753
No 306
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.3e-38 Score=332.10 Aligned_cols=182 Identities=26% Similarity=0.474 Sum_probs=160.7
Q ss_pred cEEEEeEEEEcCCCC-CcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhccc--CCCccEEEECCeeCCCCCHHHHh
Q 001438 381 HIEFKDVSFCYPSRP-DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFY--EPLSGEILLDGNNIKGLDLKWLR 457 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~-~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~--~~~~G~i~~~g~~~~~~~~~~~r 457 (1077)
.|+++|+++.|++.. +.++++|+||++++||+++|+||||||||||+++|+|++ +|++|+|.++|+++. ..++
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~----~~~~ 78 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD----KNFQ 78 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH----HHhh
Confidence 489999999997421 246899999999999999999999999999999999986 489999999999875 4567
Q ss_pred hheeEEccCCCcccc-cHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhc
Q 001438 458 QQIGLVNQEPALFAT-TIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIV 536 (1077)
Q Consensus 458 ~~i~~v~Q~~~lf~~-ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~ 536 (1077)
++++|++|++.+|+. |++||+.++.. +. +||||||||++||||++
T Consensus 79 ~~i~~~~q~~~~~~~~tv~~~l~~~~~-------------------~~---------------~LSgGe~qrv~la~al~ 124 (192)
T cd03232 79 RSTGYVEQQDVHSPNLTVREALRFSAL-------------------LR---------------GLSVEQRKRLTIGVELA 124 (192)
T ss_pred hceEEecccCccccCCcHHHHHHHHHH-------------------Hh---------------cCCHHHhHHHHHHHHHh
Confidence 789999999988875 99999985310 00 79999999999999999
Q ss_pred cCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchh-H-hhcCEEEEEEC-CEEEEec
Q 001438 537 KNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLST-I-RNADVIAVVQG-RKIVKTG 600 (1077)
Q Consensus 537 ~~p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~-~-~~~d~i~~l~~-G~i~~~g 600 (1077)
.+|+++||||||++||+.+.+.+.+.|+++. +++|+|++||+++. + ..||+|++|++ |++++.|
T Consensus 125 ~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 125 AKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred cCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 9999999999999999999999999998875 48999999999984 4 56999999999 9999865
No 307
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=100.00 E-value=2.1e-38 Score=322.10 Aligned_cols=164 Identities=32% Similarity=0.516 Sum_probs=150.3
Q ss_pred EEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhee
Q 001438 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (1077)
Q Consensus 382 i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 461 (1077)
|+++|++++|++. +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|. ++++
T Consensus 1 i~~~~~~~~~~~~--~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~-----------~~i~ 67 (166)
T cd03223 1 IELENLSLATPDG--RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG-----------EDLL 67 (166)
T ss_pred CEEEEEEEEcCCC--CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC-----------ceEE
Confidence 4789999999642 35899999999999999999999999999999999999999999999883 4799
Q ss_pred EEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccCCCE
Q 001438 462 LVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSI 541 (1077)
Q Consensus 462 ~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~p~i 541 (1077)
|++|++.+++.|++||+.++ .+.+||||||||++||||++++|++
T Consensus 68 ~~~q~~~~~~~tv~~nl~~~-----------------------------------~~~~LS~G~~~rv~laral~~~p~~ 112 (166)
T cd03223 68 FLPQRPYLPLGTLREQLIYP-----------------------------------WDDVLSGGEQQRLAFARLLLHKPKF 112 (166)
T ss_pred EECCCCccccccHHHHhhcc-----------------------------------CCCCCCHHHHHHHHHHHHHHcCCCE
Confidence 99999999988999999763 2358999999999999999999999
Q ss_pred EEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhhcCEEEEEECCE
Q 001438 542 LLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRK 595 (1077)
Q Consensus 542 lllDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~~d~i~~l~~G~ 595 (1077)
+||||||++||+++.+.+.+.|++. ++|+|++||+++....||++++|++|-
T Consensus 113 lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~~~d~i~~l~~~~ 164 (166)
T cd03223 113 VFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWKFHDRVLDLDGEG 164 (166)
T ss_pred EEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHhhCCEEEEEcCCC
Confidence 9999999999999999999999876 689999999999877899999998863
No 308
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=1.6e-38 Score=328.70 Aligned_cols=172 Identities=25% Similarity=0.459 Sum_probs=156.4
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCH-HHHhhh
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDL-KWLRQQ 459 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~-~~~r~~ 459 (1077)
.++++|++++| +++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+. ...|++
T Consensus 4 ~l~~~~l~~~~-------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 76 (182)
T cd03215 4 VLEVRGLSVKG-------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAG 76 (182)
T ss_pred EEEEeccEEEe-------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCC
Confidence 48999999988 6999999999999999999999999999999999999999999999999988764 456778
Q ss_pred eeEEccCC---Ccc-cccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHh
Q 001438 460 IGLVNQEP---ALF-ATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAI 535 (1077)
Q Consensus 460 i~~v~Q~~---~lf-~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal 535 (1077)
++|++|++ .++ ..|++||+.++.. ||||||||++||||+
T Consensus 77 i~~~~q~~~~~~~~~~~t~~e~l~~~~~-------------------------------------LS~G~~qrl~la~al 119 (182)
T cd03215 77 IAYVPEDRKREGLVLDLSVAENIALSSL-------------------------------------LSGGNQQKVVLARWL 119 (182)
T ss_pred eEEecCCcccCcccCCCcHHHHHHHHhh-------------------------------------cCHHHHHHHHHHHHH
Confidence 99999995 345 4699999976421 999999999999999
Q ss_pred ccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHhh-cCEEEEEECCEE
Q 001438 536 VKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKI 596 (1077)
Q Consensus 536 ~~~p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i 596 (1077)
+.+|+++||||||++||+++++.+.+.|+++. +++|+|++||+++.+.. ||++++|++|++
T Consensus 120 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 120 ARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCDRILVMYEGRI 182 (182)
T ss_pred ccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEecCCcC
Confidence 99999999999999999999999999998874 47999999999998876 999999999974
No 309
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=100.00 E-value=2.4e-35 Score=361.14 Aligned_cols=385 Identities=15% Similarity=0.196 Sum_probs=303.9
Q ss_pred HHHHHhhcccchHHHHHHHHHHHHHhhHHhHHHHHHHHHHHhhccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 684 AIKLYSMVRPDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYYMDWDTTQREVKKITILFCCAAVITVIVHAIEHLSFG 763 (1077)
Q Consensus 684 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 763 (1077)
.+++.++.++++.++....+++++..+..+..++.+..+++..... .......++++++.++..+..++......
T Consensus 7 ~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~iid~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (588)
T PRK13657 7 YARVLQYLGAEKRLGILLAVANVLLAAATFAEPILFGRIIDAISGK-----GDIFPLLAAWAGFGLFNIIAGVLVARHAD 81 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----ccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666677766666666666666677777777777654321 11111122223333333333333333334
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCccccccccCCchhHHHHHhhcHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 001438 764 IMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQNFGLVTASFVIAFILNWRIT 843 (1077)
Q Consensus 764 ~~~~~~~~~Lr~~l~~~llr~p~~FFD~~~~~~G~IlnR~s~D~~~i~~~l~~~l~~~~~~~~~~~~~i~i~~~~~w~l~ 843 (1077)
+...+...+++.++|+++++.|.++|++ .++|++++|+++|++.+...+...+..++..++..++.++++++.+|.++
T Consensus 82 ~~~~~~~~~l~~~l~~~l~~~~~~~~~~--~~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 159 (588)
T PRK13657 82 RLAHRRRLAVLTEYFERIIQLPLAWHSQ--RGSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLALFMNWRLS 159 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHCc--CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555556669999999999999995 89999999999999999988888888888888888888888899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHcchHHHHHhcchHHHHHHHHHHhhhhhHHHHHHHHHH
Q 001438 844 LVVVATYPLIISGHISEKLFFQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRSFIRGQIA 923 (1077)
Q Consensus 844 l~~l~~~Pl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Etl~Gi~tIrAf~~e~~~~~~f~~~~~~~~~~~~~~~~~~ 923 (1077)
+++++++|+.++......+..+....+.++...+..+.+.|+++|+++||+|+.|+++.++|.+..++..+...+.....
T Consensus 160 l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (588)
T PRK13657 160 LVLVVLGIVYTLITTLVMRKTKDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPVLSWW 239 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888887776666666666666777778888889999999999999999999999999999998888877777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHcCCCCc
Q 001438 924 GIFYGISQFFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLALVPDLLKGNQMAASVFEVLDRKTQV 1003 (1077)
Q Consensus 924 ~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~ 1003 (1077)
+....+.+........+++++|+.++..|.++++.++++..+......++..+......+..+..+.+|+.++++.+++.
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~ 319 (588)
T PRK13657 240 ALASVLNRAASTITMLAILVLGAALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVPDV 319 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccc
Confidence 77777777777788888999999999999999999999988888888899999999999999999999999999875543
Q ss_pred cCCCC-cccccccccEEEeeeeeeCCCCCcccccccceeeeeCCCEEEEECCCCCCHHHHHHHHhhccCCCCCCC
Q 001438 1004 IGDIG-EELTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKA 1077 (1077)
Q Consensus 1004 ~~~~~-~~~~~~~G~I~f~nVsf~Y~~~~~~~VLk~vsl~I~~GekVaIVGrTGsGKSTLi~lL~Rfyd~~~G~i 1077 (1077)
+.... .+.++.+|.|+|+||+|+||++ .++|+|+||+|+|||++||||+||||||||+++|.|+|+|++|+|
T Consensus 320 ~~~~~~~~~~~~~~~I~~~~vsf~y~~~--~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I 392 (588)
T PRK13657 320 RDPPGAIDLGRVKGAVEFDDVSFSYDNS--RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRI 392 (588)
T ss_pred CCCCCCCCcCCCCCeEEEEEEEEEeCCC--CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEE
Confidence 22111 1112345789999999999853 358999999999999999999999999999999999999999975
No 310
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4e-38 Score=384.84 Aligned_cols=228 Identities=28% Similarity=0.446 Sum_probs=185.8
Q ss_pred cEEEEeEEEEcCCCC--------CcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCC
Q 001438 381 HIEFKDVSFCYPSRP--------DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLD 452 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~--------~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~ 452 (1077)
.++++|+++.|+.+. ...+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+
T Consensus 313 ~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~ 392 (623)
T PRK10261 313 ILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLS 392 (623)
T ss_pred eEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCC
Confidence 589999999996311 235899999999999999999999999999999999999999999999999998765
Q ss_pred HH---HHhhheeEEccCCC--cccc-cHHHHHhcCCC--C-CCHHHHHHHHHHHhHHHHHhcCccchh-hhhcCCCCCCC
Q 001438 453 LK---WLRQQIGLVNQEPA--LFAT-TIRENILYGKD--D-ATMEEITRAAKLSEAMSFISNLPERFE-TQVGERGIQLS 522 (1077)
Q Consensus 453 ~~---~~r~~i~~v~Q~~~--lf~~-ti~~ni~~~~~--~-~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~~~~~g~~LS 522 (1077)
.. .+|++|+||+|+|. +++. |+.||+.++.. . ...++.. .+..+..+ .+ |++ ........+||
T Consensus 393 ~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~--~~~~~~L~---~~--gL~~~~~~~~~~~LS 465 (623)
T PRK10261 393 PGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAA--ARVAWLLE---RV--GLLPEHAWRYPHEFS 465 (623)
T ss_pred HHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHH--HHHHHHHH---Hc--CCCHHHhhCCcccCC
Confidence 43 35678999999983 6654 99999976421 1 1111111 11112222 22 332 23456677999
Q ss_pred hHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEccCchhHhh-cCEEEEEECCEEEEe
Q 001438 523 GGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKT 599 (1077)
Q Consensus 523 gGqkqri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~ 599 (1077)
||||||++|||||+.+|++|||||||++||+.+...+.+.|+++. .|.|+|+|||+++.+.. ||+|++|++|+|++.
T Consensus 466 gGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G~iv~~ 545 (623)
T PRK10261 466 GGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIVEI 545 (623)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 999999999999999999999999999999999999999998874 37999999999999875 999999999999999
Q ss_pred cChhHHhcCCCchHHH
Q 001438 600 GSHEELISNPNSAYAA 615 (1077)
Q Consensus 600 g~~~~l~~~~~~~~~~ 615 (1077)
|+++++..++...|.+
T Consensus 546 g~~~~i~~~p~~~~~~ 561 (623)
T PRK10261 546 GPRRAVFENPQHPYTR 561 (623)
T ss_pred cCHHHHhcCCCCHHHH
Confidence 9999998776666755
No 311
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=100.00 E-value=3.5e-38 Score=339.29 Aligned_cols=210 Identities=31% Similarity=0.476 Sum_probs=167.1
Q ss_pred cccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCC----CccEEEECCeeCCCCCHHHHhhheeEEccCCC-cc-c-
Q 001438 399 IFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEP----LSGEILLDGNNIKGLDLKWLRQQIGLVNQEPA-LF-A- 471 (1077)
Q Consensus 399 ~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~----~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~-lf-~- 471 (1077)
+++|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|+++... +..++.++|++|++. .| +
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~--~~~~~~i~~~~q~~~~~~~~~ 78 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPL--SIRGRHIATIMQNPRTAFNPL 78 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhh--hhhhheeEEEecCchhhcCcc
Confidence 47899999999999999999999999999999999999 899999999998654 223457999999995 34 3
Q ss_pred ccHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCcCC
Q 001438 472 TTIRENILYGKDD--ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATS 549 (1077)
Q Consensus 472 ~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~p~illlDEpts 549 (1077)
.|+.||+.+.... ...++.. .+.....+.+ .++++ ++.....+.+||||||||++||||++++|+++||||||+
T Consensus 79 ~t~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~-~l~~~-~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~ 154 (230)
T TIGR02770 79 FTMGNHAIETLRSLGKLSKQAR--ALILEALEAV-GLPDP-EEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTT 154 (230)
T ss_pred cCHHHHHHHHHHHcCccHHHHH--HHHHHHHHHc-CCCch-HHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 4999998653211 1111111 1111222221 23322 245567788999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHhC--CCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHhcCCCchHH
Q 001438 550 ALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISNPNSAYA 614 (1077)
Q Consensus 550 ~lD~~~~~~i~~~l~~~~~--~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~ 614 (1077)
+||+.+.+.+.+.|+++.+ ++|+|++||+++.+.. ||++++|++|++++.|+++++...+...|.
T Consensus 155 ~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~ 222 (230)
T TIGR02770 155 DLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYNPKHETT 222 (230)
T ss_pred ccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCcCCHHH
Confidence 9999999999999998753 7899999999999864 999999999999999999999865444444
No 312
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=100.00 E-value=7.6e-38 Score=342.09 Aligned_cols=216 Identities=25% Similarity=0.376 Sum_probs=175.4
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcc--cCCCccEEEECCeeCCCCCHHHHhh
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERF--YEPLSGEILLDGNNIKGLDLKWLRQ 458 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~--~~~~~G~i~~~g~~~~~~~~~~~r~ 458 (1077)
.++++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+ ++|++|+|.++|+++...+....++
T Consensus 7 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~ 83 (252)
T CHL00131 7 ILEIKNLHASVNE---NEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAH 83 (252)
T ss_pred eEEEEeEEEEeCC---EEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhhe
Confidence 5899999999973 3589999999999999999999999999999999998 6899999999999998877665554
Q ss_pred -heeEEccCCCcccc-cHHHHHhcCCCC---------CCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCC-CCChHHH
Q 001438 459 -QIGLVNQEPALFAT-TIRENILYGKDD---------ATMEEITRAAKLSEAMSFISNLPERFETQVGERGI-QLSGGQK 526 (1077)
Q Consensus 459 -~i~~v~Q~~~lf~~-ti~~ni~~~~~~---------~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~-~LSgGqk 526 (1077)
.++|++|++.++++ |+.+|+.++... ....+.. .+.....+.+ .++ ++..+.... +||||||
T Consensus 84 ~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~-~l~---~~~~~~~~~~~LSgG~~ 157 (252)
T CHL00131 84 LGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFL--EIINEKLKLV-GMD---PSFLSRNVNEGFSGGEK 157 (252)
T ss_pred eeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHH--HHHHHHHHHc-CCc---hhhhccccccCCCHHHH
Confidence 58999999999986 899998764210 0111111 1111222222 222 123444444 5999999
Q ss_pred HHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHhh--cCEEEEEECCEEEEecChh
Q 001438 527 QRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN--ADVIAVVQGRKIVKTGSHE 603 (1077)
Q Consensus 527 qri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~--~d~i~~l~~G~i~~~g~~~ 603 (1077)
||++||||++.+|+++||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||++++|++|++++.|+++
T Consensus 158 qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~~~~~~~ 237 (252)
T CHL00131 158 KRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIKTGDAE 237 (252)
T ss_pred HHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEEEEeCCEEEEecChh
Confidence 99999999999999999999999999999999999998875 58999999999999874 8999999999999999987
Q ss_pred HH
Q 001438 604 EL 605 (1077)
Q Consensus 604 ~l 605 (1077)
++
T Consensus 238 ~~ 239 (252)
T CHL00131 238 LA 239 (252)
T ss_pred hh
Confidence 43
No 313
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=100.00 E-value=1.8e-38 Score=336.19 Aligned_cols=198 Identities=32% Similarity=0.516 Sum_probs=160.8
Q ss_pred EEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCH----HHHhhh
Q 001438 384 FKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDL----KWLRQQ 459 (1077)
Q Consensus 384 ~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~----~~~r~~ 459 (1077)
++|+++.|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++..+.. ...++.
T Consensus 1 i~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 77 (206)
T TIGR03608 1 LKNISKKFGD---KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREK 77 (206)
T ss_pred CcceEEEECC---EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhC
Confidence 4689999963 358999999999999999999999999999999999999999999999999765432 235678
Q ss_pred eeEEccCCCccc-ccHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhc
Q 001438 460 IGLVNQEPALFA-TTIRENILYGKDD--ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIV 536 (1077)
Q Consensus 460 i~~v~Q~~~lf~-~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~ 536 (1077)
++|++|++.+|+ .|++||+.++... ...++..+ +.... ++.+ |++........+||||||||++|||||+
T Consensus 78 i~~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~--~~~~~---l~~~--~l~~~~~~~~~~lS~G~~qr~~laral~ 150 (206)
T TIGR03608 78 LGYLFQNFALIENETVEENLDLGLKYKKLSKKEKRE--KKKEA---LEKV--GLNLKLKQKIYELSGGEQQRVALARAIL 150 (206)
T ss_pred eeEEecchhhccCCcHHHHHHHHHHhcCCCHHHHHH--HHHHH---HHHc--CchhhhcCChhhCCHHHHHHHHHHHHHH
Confidence 999999999987 5999999875321 11111111 11111 2222 2333445566789999999999999999
Q ss_pred cCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHhhcCEEEEE
Q 001438 537 KNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRNADVIAVV 591 (1077)
Q Consensus 537 ~~p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~~d~i~~l 591 (1077)
.+|+++||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+..||+|++|
T Consensus 151 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~i~~l 206 (206)
T TIGR03608 151 KDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVAKQADRVIEL 206 (206)
T ss_pred cCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEeC
Confidence 9999999999999999999999999998875 489999999999988789999875
No 314
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=100.00 E-value=6.6e-38 Score=341.87 Aligned_cols=215 Identities=23% Similarity=0.337 Sum_probs=170.0
Q ss_pred EEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhccc--CCCccEEEECCeeCCCCCHHHHh-h
Q 001438 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFY--EPLSGEILLDGNNIKGLDLKWLR-Q 458 (1077)
Q Consensus 382 i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~--~~~~G~i~~~g~~~~~~~~~~~r-~ 458 (1077)
|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|++ +|++|+|.++|+++...+....+ +
T Consensus 2 i~~~nl~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (248)
T PRK09580 2 LSIKDLHVSVED---KAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGE 78 (248)
T ss_pred eEEEEEEEEeCC---eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhc
Confidence 789999999974 35899999999999999999999999999999999994 69999999999999877766554 5
Q ss_pred heeEEccCCCcccc-cHHHHHhcCCCC---C------CHHHHHHHHHHHhHHHHHhcCccchhhhhcCCC-CCCChHHHH
Q 001438 459 QIGLVNQEPALFAT-TIRENILYGKDD---A------TMEEITRAAKLSEAMSFISNLPERFETQVGERG-IQLSGGQKQ 527 (1077)
Q Consensus 459 ~i~~v~Q~~~lf~~-ti~~ni~~~~~~---~------~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g-~~LSgGqkq 527 (1077)
.++|++|++.+++. |..+++.+.... . ...+..+ ......+. ..+|+++.+. .. .+|||||||
T Consensus 79 ~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~-~~l~~~~~~~---~~~~~LS~G~~q 152 (248)
T PRK09580 79 GIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQD--LMEEKIAL-LKMPEDLLTR---SVNVGFSGGEKK 152 (248)
T ss_pred ceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHH--HHHHHHHH-cCCChhhccc---CCCCCCCHHHHH
Confidence 69999999987765 555554321110 0 0001111 11111121 1344443332 23 379999999
Q ss_pred HHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHhh--cCEEEEEECCEEEEecChhH
Q 001438 528 RIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN--ADVIAVVQGRKIVKTGSHEE 604 (1077)
Q Consensus 528 ri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~--~d~i~~l~~G~i~~~g~~~~ 604 (1077)
|++||||++++|+++||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|++++
T Consensus 153 rv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~~~g~~~~ 232 (248)
T PRK09580 153 RNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFTL 232 (248)
T ss_pred HHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhhCCEEEEEECCeEEEeCCHHH
Confidence 9999999999999999999999999999999999998875 47899999999999876 89999999999999999875
Q ss_pred H
Q 001438 605 L 605 (1077)
Q Consensus 605 l 605 (1077)
.
T Consensus 233 ~ 233 (248)
T PRK09580 233 V 233 (248)
T ss_pred H
Confidence 4
No 315
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.7e-38 Score=345.25 Aligned_cols=214 Identities=24% Similarity=0.414 Sum_probs=170.2
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhe
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 460 (1077)
.++++|++++|++. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. ...++.+
T Consensus 6 ~l~~~~l~~~~~~~--~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~---~~~~~~i 80 (272)
T PRK15056 6 GIVVNDVTVTWRNG--HTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQ---ALQKNLV 80 (272)
T ss_pred eEEEEeEEEEecCC--cEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHH---hhccceE
Confidence 58999999999632 358999999999999999999999999999999999999999999999998742 1123469
Q ss_pred eEEccCCCc---ccccHHHHHhcCCCC------CCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHH
Q 001438 461 GLVNQEPAL---FATTIRENILYGKDD------ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAI 531 (1077)
Q Consensus 461 ~~v~Q~~~l---f~~ti~~ni~~~~~~------~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~l 531 (1077)
+|+||++.+ +..++++|+.++... ....+..+. .....+ .+ |+.........+||||||||++|
T Consensus 81 ~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~--~~~~l~---~~--gl~~~~~~~~~~LSgG~~qrv~l 153 (272)
T PRK15056 81 AYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQI--VTAALA---RV--DMVEFRHRQIGELSGGQKKRVFL 153 (272)
T ss_pred EEeccccccccCCCcchhhheecccccccccccCCCHHHHHH--HHHHHH---Hc--CChhHhcCCcccCCHHHHHHHHH
Confidence 999999865 455899998764210 000111111 111111 11 22223345567899999999999
Q ss_pred HHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHhc
Q 001438 532 SRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELIS 607 (1077)
Q Consensus 532 ARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 607 (1077)
|||++.+|+++||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||+++++ +|++++.|+++++..
T Consensus 154 araL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v~~~-~G~i~~~g~~~~~~~ 230 (272)
T PRK15056 154 ARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMV-KGTVLASGPTETTFT 230 (272)
T ss_pred HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHhccC
Confidence 999999999999999999999999999999998875 48999999999998754 9999777 899999999998753
No 316
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=100.00 E-value=1.3e-37 Score=338.24 Aligned_cols=210 Identities=23% Similarity=0.406 Sum_probs=173.1
Q ss_pred EEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhheeE
Q 001438 383 EFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGL 462 (1077)
Q Consensus 383 ~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 462 (1077)
+++|+++. .+|+|+||++++||+++|+||||||||||+++|+|++++ +|+|.++|+++...+...+++.++|
T Consensus 2 ~~~~l~~~-------~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~-~G~i~~~g~~i~~~~~~~~~~~i~~ 73 (248)
T PRK03695 2 QLNDVAVS-------TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG-SGSIQFAGQPLEAWSAAELARHRAY 73 (248)
T ss_pred cccccchh-------ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC-CeEEEECCEecCcCCHHHHhhheEE
Confidence 46777774 168999999999999999999999999999999999865 9999999999988887788888999
Q ss_pred EccCCCcc-cccHHHHHhcCCCCC-CHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhcc---
Q 001438 463 VNQEPALF-ATTIRENILYGKDDA-TMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVK--- 537 (1077)
Q Consensus 463 v~Q~~~lf-~~ti~~ni~~~~~~~-~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~--- 537 (1077)
+||++.++ ..|++||+.++.... ..++..+ + ..+.++.+ |++.........||||||||++||||++.
T Consensus 74 v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~--~---~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~ 146 (248)
T PRK03695 74 LSQQQTPPFAMPVFQYLTLHQPDKTRTEAVAS--A---LNEVAEAL--GLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWP 146 (248)
T ss_pred ecccCccCCCccHHHHHHhcCccCCCcHHHHH--H---HHHHHHHc--CCHhHhcCCcccCCHHHHHHHHHHHHHhcccc
Confidence 99998654 569999999864321 1111111 1 11222222 34444566778999999999999999997
Q ss_pred ----CCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHh-hcCEEEEEECCEEEEecChhHHhc
Q 001438 538 ----NPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIR-NADVIAVVQGRKIVKTGSHEELIS 607 (1077)
Q Consensus 538 ----~p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~ 607 (1077)
+|+++||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+. .||++++|++|++++.|+++++..
T Consensus 147 ~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 222 (248)
T PRK03695 147 DINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVLT 222 (248)
T ss_pred ccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhC
Confidence 679999999999999999999999998875 5899999999999775 599999999999999999988864
No 317
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=6.4e-35 Score=353.70 Aligned_cols=372 Identities=16% Similarity=0.172 Sum_probs=297.9
Q ss_pred cchHHHHHHHHHHHHHhhHHhHHHHHHHHHHHhhccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 693 PDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYYMDWDTTQREVKKITILFCCAAVITVIVHAIEHLSFGIMGERLTLR 772 (1077)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 772 (1077)
++++.+...++++++......+.++.+..+++....... ......+.++++++.++..++.+++.++....+.++..+
T Consensus 3 ~~k~~~~~~~~~~~~~~~~~l~~p~~~~~iid~~~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (544)
T TIGR01842 3 KNKSTFIIVGLFSFVINILMLAPPLYMLQVYDRVLTSGS--VPTLLMLTVLALGLYLFLGLLDALRSFVLVRIGEKLDGA 80 (544)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555566666666666777888888875542111 112223344455556667778888999999999999999
Q ss_pred HHHHHHHHHHcCCccccccccCCchhHHHHHhhcHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 001438 773 VREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVD-RSTILIQNFGLVTASFVIAFILNWRITLVVVATYP 851 (1077)
Q Consensus 773 Lr~~l~~~llr~p~~FFD~~~~~~G~IlnR~s~D~~~i~~~l~~-~l~~~~~~~~~~~~~i~i~~~~~w~l~l~~l~~~P 851 (1077)
+|.++|+++++.|+..+ |..++++++|++.+++.+.. .+..++..++.++ .++++++++|++++++++..|
T Consensus 81 lr~~~~~~ll~~~~~~~-------~~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~l~li~l~~~~ 152 (544)
T TIGR01842 81 LNQPIFAASFSATLRRG-------KIDGLQALRDLDQLRQFLTGPGLFAFFDAPWMPI-YLLVCFLLHPWIGILALGGAV 152 (544)
T ss_pred HHHHHHHHHhcCcccCc-------cchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-HHHHHHHHhhHHHHHHHHHHH
Confidence 99999999999998432 45789999999999988776 4555555555544 446788899999999888888
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHcchHHHHHhcchHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 001438 852 LIISGHISEKLFFQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRSFIRGQIAGIFYGISQ 931 (1077)
Q Consensus 852 l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Etl~Gi~tIrAf~~e~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 931 (1077)
++++...+..+..++..++.++...+....+.|+++|+++||+|+.|+++.++|.+..++..+...+.....+.......
T Consensus 153 l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (544)
T TIGR01842 153 VLVGLALLNNRATKKPLKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAGMLSNLSK 232 (544)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87766656666666666677778888888999999999999999999999999999999888887777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHcCCCCccCCCCccc
Q 001438 932 FFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLALVPDLLKGNQMAASVFEVLDRKTQVIGDIGEEL 1011 (1077)
Q Consensus 932 ~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~ 1011 (1077)
.+......+++++|+.++..|.++++.++++..+......|+..+......++.+..+.+|+.++++.+++..+. .+.
T Consensus 233 ~~~~~~~~~~~~~g~~l~~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~--~~~ 310 (544)
T TIGR01842 233 YFRIVLQSLVLGLGAYLAIDGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDPA--MPL 310 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccCC--CCC
Confidence 777777788889999999999999999999999988889999999999999999999999999999876543211 112
Q ss_pred ccccccEEEeeeeeeCCCCCcccccccceeeeeCCCEEEEECCCCCCHHHHHHHHhhccCCCCCCC
Q 001438 1012 TNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKA 1077 (1077)
Q Consensus 1012 ~~~~G~I~f~nVsf~Y~~~~~~~VLk~vsl~I~~GekVaIVGrTGsGKSTLi~lL~Rfyd~~~G~i 1077 (1077)
++.+|.|+|+||+|+||+. +.++|+|+||+|+|||++|||||||||||||+++|.|+|+|++|+|
T Consensus 311 ~~~~~~i~~~~v~~~y~~~-~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i 375 (544)
T TIGR01842 311 PEPEGHLSVENVTIVPPGG-KKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSV 375 (544)
T ss_pred CCCCCeEEEEEEEEEcCCC-CccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE
Confidence 2345789999999999754 2458999999999999999999999999999999999999999975
No 318
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=100.00 E-value=5.2e-38 Score=324.32 Aligned_cols=177 Identities=37% Similarity=0.581 Sum_probs=155.5
Q ss_pred EEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhheeE
Q 001438 383 EFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGL 462 (1077)
Q Consensus 383 ~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 462 (1077)
+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...+++.++|
T Consensus 1 ~~~~l~~~~~~---~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~ 77 (180)
T cd03214 1 EVENLSVGYGG---RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAY 77 (180)
T ss_pred CeeEEEEEECC---eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhH
Confidence 47899999964 358999999999999999999999999999999999999999999999999988888888888999
Q ss_pred EccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccCCCEE
Q 001438 463 VNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSIL 542 (1077)
Q Consensus 463 v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~p~il 542 (1077)
++| +++..++ .......+.+||||||||++||||++.+|+++
T Consensus 78 ~~q---------------------------~l~~~gl-----------~~~~~~~~~~LS~G~~qrl~laral~~~p~ll 119 (180)
T cd03214 78 VPQ---------------------------ALELLGL-----------AHLADRPFNELSGGERQRVLLARALAQEPPIL 119 (180)
T ss_pred HHH---------------------------HHHHcCC-----------HhHhcCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 999 1222121 12233456789999999999999999999999
Q ss_pred EEeCcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEccCchhHh-hcCEEEEEECCEEEEec
Q 001438 543 LLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIR-NADVIAVVQGRKIVKTG 600 (1077)
Q Consensus 543 llDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~vtH~~~~~~-~~d~i~~l~~G~i~~~g 600 (1077)
||||||++||+++.+.+.+.|+++.+ ++|+|++||+++.+. .||++++|++|++++.|
T Consensus 120 llDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~~~ 180 (180)
T cd03214 120 LLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180 (180)
T ss_pred EEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999988754 789999999999985 59999999999998654
No 319
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=100.00 E-value=5.2e-38 Score=338.85 Aligned_cols=196 Identities=26% Similarity=0.405 Sum_probs=158.4
Q ss_pred cccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhheeEEc-cCCCccc-ccH
Q 001438 397 VAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVN-QEPALFA-TTI 474 (1077)
Q Consensus 397 ~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~-Q~~~lf~-~ti 474 (1077)
+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++... ...++++++|++ |++.++. .|+
T Consensus 34 ~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i~~~~~~~~~~~~~~tv 112 (236)
T cd03267 34 VEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKR-RKKFLRRIGVVFGQKTQLWWDLPV 112 (236)
T ss_pred eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccc-chhhcccEEEEcCCccccCCCCcH
Confidence 4689999999999999999999999999999999999999999999999987543 345677899997 5677764 599
Q ss_pred HHHHhcCCC--CCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCcCCCCC
Q 001438 475 RENILYGKD--DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALD 552 (1077)
Q Consensus 475 ~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~p~illlDEpts~lD 552 (1077)
+||+.+... ....++..+.+ ..+.+.+ .+++. ......+||||||||++||||++.+|+++||||||++||
T Consensus 113 ~e~l~~~~~~~~~~~~~~~~~~--~~~l~~~-gl~~~----~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD 185 (236)
T cd03267 113 IDSFYLLAAIYDLPPARFKKRL--DELSELL-DLEEL----LDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLD 185 (236)
T ss_pred HHHHHHHHHHcCCCHHHHHHHH--HHHHHHc-CChhH----hcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCC
Confidence 999976431 12223222211 1222222 23333 334456899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHh--CCCeEEEEccCchhHhh-cCEEEEEECCEEEEec
Q 001438 553 AESENSVQEALDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTG 600 (1077)
Q Consensus 553 ~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g 600 (1077)
+.+.+.+.+.|+++. .++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 186 ~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 186 VVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEecC
Confidence 999999999999874 37899999999998865 9999999999998765
No 320
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.1e-38 Score=303.47 Aligned_cols=210 Identities=29% Similarity=0.495 Sum_probs=169.7
Q ss_pred EEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhee
Q 001438 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (1077)
Q Consensus 382 i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 461 (1077)
+..++++.+|++.+ ..+|+|+|++|.+||+++++||||||||||+|+++|+++|..|+|.+||.+|..-.. .=|
T Consensus 4 l~~~~~sl~y~g~~-~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPga-----erg 77 (259)
T COG4525 4 LNVSHLSLSYEGKP-RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGA-----ERG 77 (259)
T ss_pred eehhheEEecCCcc-hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCc-----cce
Confidence 55678999998764 569999999999999999999999999999999999999999999999998875432 368
Q ss_pred EEccCCCcccc-cHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccCCC
Q 001438 462 LVNQEPALFAT-TIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPS 540 (1077)
Q Consensus 462 ~v~Q~~~lf~~-ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~p~ 540 (1077)
.|+|++-|++- |+.||+.||......++..+.....+....+ |++..-.....+||||||||+.|||||..+|+
T Consensus 78 vVFQ~~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~V-----gL~~~~~~~i~qLSGGmrQRvGiARALa~eP~ 152 (259)
T COG4525 78 VVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALV-----GLEGAEHKYIWQLSGGMRQRVGIARALAVEPQ 152 (259)
T ss_pred eEeccCccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHh-----CcccccccceEeecchHHHHHHHHHHhhcCcc
Confidence 99999999986 9999999997432222222211111111111 22222234567899999999999999999999
Q ss_pred EEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEccCchhHh-hcCEEEEEE--CCEEEEecCh
Q 001438 541 ILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIR-NADVIAVVQ--GRKIVKTGSH 602 (1077)
Q Consensus 541 illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~~-~~d~i~~l~--~G~i~~~g~~ 602 (1077)
.|+||||++|||.-+++++++.|.++. .|+.+++|||+++..- -|++++||+ .|+|++.-++
T Consensus 153 ~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAlflatrLvvlsp~pgRvv~~~~~ 219 (259)
T COG4525 153 LLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEALFLATRLVVLSPGPGRVVERLPL 219 (259)
T ss_pred eEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHhhhheeEEecCCCceeeEecCC
Confidence 999999999999999999999998763 5899999999999865 499999997 4689886543
No 321
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=5.5e-38 Score=326.78 Aligned_cols=197 Identities=37% Similarity=0.539 Sum_probs=166.6
Q ss_pred cEEEEeEEEEcCCCC------CcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHH
Q 001438 381 HIEFKDVSFCYPSRP------DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLK 454 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~------~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~ 454 (1077)
-++++|+++.|+... ...+++||||+|++||+++|||+|||||||+.++|+|+++|++|+|+++|+|+..++
T Consensus 4 ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~-- 81 (268)
T COG4608 4 LLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS-- 81 (268)
T ss_pred eEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcc--
Confidence 478999999997532 136899999999999999999999999999999999999999999999999877654
Q ss_pred HHhhheeEEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHH
Q 001438 455 WLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRA 534 (1077)
Q Consensus 455 ~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARa 534 (1077)
.....+++.+.++.++ ++. ......+.+|||||||||+||||
T Consensus 82 ----------------------------~~~~~~~v~elL~~Vg-------l~~---~~~~ryPhelSGGQrQRi~IARA 123 (268)
T COG4608 82 ----------------------------KEERRERVLELLEKVG-------LPE---EFLYRYPHELSGGQRQRIGIARA 123 (268)
T ss_pred ----------------------------hhHHHHHHHHHHHHhC-------CCH---HHhhcCCcccCchhhhhHHHHHH
Confidence 1111222333333222 222 13455677999999999999999
Q ss_pred hccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHhcCCCc
Q 001438 535 IVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISNPNS 611 (1077)
Q Consensus 535 l~~~p~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~ 611 (1077)
|..+|+++++|||+|+||...+.++.+.+.++. .|-|.++|||+++.+++ ||||.||..|+|+|.|+.+++..++..
T Consensus 124 Lal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE~g~~~~~~~~p~H 203 (268)
T COG4608 124 LALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVFSNPLH 203 (268)
T ss_pred HhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcccEEEEecCceeEecCHHHHhhCCCC
Confidence 999999999999999999999999999998875 48999999999999987 999999999999999999999999999
Q ss_pred hHHHHH
Q 001438 612 AYAALV 617 (1077)
Q Consensus 612 ~~~~~~ 617 (1077)
.|.+..
T Consensus 204 pYTk~L 209 (268)
T COG4608 204 PYTKAL 209 (268)
T ss_pred HHHHHH
Confidence 998754
No 322
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=1.6e-37 Score=314.64 Aligned_cols=159 Identities=31% Similarity=0.561 Sum_probs=147.5
Q ss_pred EEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCH-HHHhhhe
Q 001438 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDL-KWLRQQI 460 (1077)
Q Consensus 382 i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~-~~~r~~i 460 (1077)
++++|++++|++ .++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+. +..++++
T Consensus 1 l~~~~l~~~~~~---~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i 77 (163)
T cd03216 1 LELRGITKRFGG---VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGI 77 (163)
T ss_pred CEEEEEEEEECC---eEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCe
Confidence 478999999974 359999999999999999999999999999999999999999999999999988765 3467789
Q ss_pred eEEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccCCC
Q 001438 461 GLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPS 540 (1077)
Q Consensus 461 ~~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~p~ 540 (1077)
+|++| ||||||||++||||++++|+
T Consensus 78 ~~~~q-------------------------------------------------------LS~G~~qrl~laral~~~p~ 102 (163)
T cd03216 78 AMVYQ-------------------------------------------------------LSVGERQMVEIARALARNAR 102 (163)
T ss_pred EEEEe-------------------------------------------------------cCHHHHHHHHHHHHHhcCCC
Confidence 99999 99999999999999999999
Q ss_pred EEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHhh-cCEEEEEECCEEEE
Q 001438 541 ILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVK 598 (1077)
Q Consensus 541 illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~ 598 (1077)
++||||||++||+++++.+.+.|+++. +++|+|++||+++.+.. ||++++|++|++++
T Consensus 103 illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 103 LLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred EEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 999999999999999999999998874 58999999999998765 99999999999875
No 323
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=2e-37 Score=371.49 Aligned_cols=215 Identities=27% Similarity=0.459 Sum_probs=180.5
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHh-hh
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLR-QQ 459 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r-~~ 459 (1077)
.|+++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...++ +.
T Consensus 11 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 87 (510)
T PRK15439 11 LLCARSISKQYSG---VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLG 87 (510)
T ss_pred eEEEEeEEEEeCC---ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCC
Confidence 5999999999963 3589999999999999999999999999999999999999999999999999877766554 46
Q ss_pred eeEEccCCCcccc-cHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccC
Q 001438 460 IGLVNQEPALFAT-TIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKN 538 (1077)
Q Consensus 460 i~~v~Q~~~lf~~-ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~ 538 (1077)
++|++|++.+++. |++||+.++.... ++..+. .....+.+ |++........+||||||||++|||||+.+
T Consensus 88 i~~v~q~~~~~~~~tv~e~l~~~~~~~--~~~~~~--~~~~l~~~-----~l~~~~~~~~~~LSgG~~qrv~la~aL~~~ 158 (510)
T PRK15439 88 IYLVPQEPLLFPNLSVKENILFGLPKR--QASMQK--MKQLLAAL-----GCQLDLDSSAGSLEVADRQIVEILRGLMRD 158 (510)
T ss_pred EEEEeccCccCCCCcHHHHhhcccccc--hHHHHH--HHHHHHHc-----CCCccccCChhhCCHHHHHHHHHHHHHHcC
Confidence 9999999998876 9999999875321 111111 11122222 222334456678999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHhc
Q 001438 539 PSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELIS 607 (1077)
Q Consensus 539 p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 607 (1077)
|++|||||||++||+.+.+.+.+.|+++. +|+|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 159 p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 229 (510)
T PRK15439 159 SRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLST 229 (510)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHcCH
Confidence 99999999999999999999999998874 58999999999999865 99999999999999999988754
No 324
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=100.00 E-value=2.8e-37 Score=335.08 Aligned_cols=208 Identities=25% Similarity=0.428 Sum_probs=171.7
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhe
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 460 (1077)
.++++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| +..+
T Consensus 4 ~l~~~~l~~~~~~---~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~-----------~~~i 69 (251)
T PRK09544 4 LVSLENVSVSFGQ---RRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG-----------KLRI 69 (251)
T ss_pred EEEEeceEEEECC---ceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC-----------ccCE
Confidence 4899999999974 3589999999999999999999999999999999999999999999987 2369
Q ss_pred eEEccCCCccc---ccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhcc
Q 001438 461 GLVNQEPALFA---TTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVK 537 (1077)
Q Consensus 461 ~~v~Q~~~lf~---~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~ 537 (1077)
+|+||++.++. .|+++|+.+.. ....+++.++++..++ ..........||||||||++||||++.
T Consensus 70 ~~v~q~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~l~~~gl-----------~~~~~~~~~~LSgGq~qrv~laral~~ 137 (251)
T PRK09544 70 GYVPQKLYLDTTLPLTVNRFLRLRP-GTKKEDILPALKRVQA-----------GHLIDAPMQKLSGGETQRVLLARALLN 137 (251)
T ss_pred EEeccccccccccChhHHHHHhccc-cccHHHHHHHHHHcCC-----------hHHHhCChhhCCHHHHHHHHHHHHHhc
Confidence 99999998764 48899986532 2233444444433332 222334567899999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHhcCCCchHH
Q 001438 538 NPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISNPNSAYA 614 (1077)
Q Consensus 538 ~p~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~ 614 (1077)
+|+++||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++ ++++.|+++++.+ ...+.
T Consensus 138 ~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~-~i~~~g~~~~~~~--~~~~~ 214 (251)
T PRK09544 138 RPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNH-HICCSGTPEVVSL--HPEFI 214 (251)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEECC-ceEeeCCHHHHhC--CHHHH
Confidence 9999999999999999999999999988743 7999999999999865 999999965 7999999999864 34444
Q ss_pred HHH
Q 001438 615 ALV 617 (1077)
Q Consensus 615 ~~~ 617 (1077)
+++
T Consensus 215 ~~~ 217 (251)
T PRK09544 215 SMF 217 (251)
T ss_pred HHh
Confidence 444
No 325
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.2e-38 Score=306.17 Aligned_cols=216 Identities=31% Similarity=0.515 Sum_probs=183.5
Q ss_pred EEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhee
Q 001438 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (1077)
Q Consensus 382 i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 461 (1077)
|+++||+++|.+ +.+++++|++|++|.+++++||||+|||||+.++.|+.++++|+|++||.++.+.+.+++.++++
T Consensus 2 I~i~nv~K~y~~---~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lS 78 (252)
T COG4604 2 ITIENVSKSYGT---KVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLS 78 (252)
T ss_pred eeehhhhHhhCC---EEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHH
Confidence 688999999974 46999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCCcccc-cHHHHHhcCCCCC-----CHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHh
Q 001438 462 LVNQEPALFAT-TIRENILYGKDDA-----TMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAI 535 (1077)
Q Consensus 462 ~v~Q~~~lf~~-ti~~ni~~~~~~~-----~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal 535 (1077)
..-|+..+-.. ||||-+.||+-++ +.++-. ...++.++++ |.+ .-++.-.+||||||||.-+|..+
T Consensus 79 ILkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~---~I~~aieyl~-L~~----l~dryLd~LSGGQrQRAfIAMVl 150 (252)
T COG4604 79 ILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRR---IINEAIEYLH-LED----LSDRYLDELSGGQRQRAFIAMVL 150 (252)
T ss_pred HHHhhchhhheeEHHHHhhcCCCcccCCCCchHHHH---HHHHHHHHhc-ccc----hHHHhHHhcccchhhhhhhheee
Confidence 99999988655 9999999997322 112111 1112223321 111 11222347999999999999999
Q ss_pred ccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHhcC
Q 001438 536 VKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISN 608 (1077)
Q Consensus 536 ~~~p~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 608 (1077)
+++.|.++||||.++||.+....+++.++++. -|||+++|-|++++... +|+|+-|++|+++.+|+++|++..
T Consensus 151 aQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK~G~vv~~G~~~eii~~ 226 (252)
T COG4604 151 AQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEIIQP 226 (252)
T ss_pred eccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhhhhheeeecCCEEEecCCHHHhcCH
Confidence 99999999999999999999999999998874 38999999999999864 999999999999999999999864
No 326
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=100.00 E-value=2.8e-37 Score=324.85 Aligned_cols=195 Identities=22% Similarity=0.354 Sum_probs=161.9
Q ss_pred EEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhee
Q 001438 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (1077)
Q Consensus 382 i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 461 (1077)
++++|++++|++ ..+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.... ..+|++++
T Consensus 1 l~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 76 (201)
T cd03231 1 LEADELTCERDG---RALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQR-DSIARGLL 76 (201)
T ss_pred CEEEEEEEEeCC---ceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccc-HHhhhheE
Confidence 478999999964 35899999999999999999999999999999999999999999999999886543 46778899
Q ss_pred EEccCCCccc-ccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccCCC
Q 001438 462 LVNQEPALFA-TTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPS 540 (1077)
Q Consensus 462 ~v~Q~~~lf~-~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~p~ 540 (1077)
|++|++.++. .|++||+.+..+....+++.++++..++ + ........+||||||||++||||++++|+
T Consensus 77 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l-------~----~~~~~~~~~LS~G~~qrl~laral~~~p~ 145 (201)
T cd03231 77 YLGHAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGL-------N----GFEDRPVAQLSAGQQRRVALARLLLSGRP 145 (201)
T ss_pred EeccccccCCCcCHHHHHHhhcccccHHHHHHHHHHcCC-------h----hhhcCchhhCCHHHHHHHHHHHHHhcCCC
Confidence 9999998874 6999999876433333333333333222 1 12234556899999999999999999999
Q ss_pred EEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhH-hhcCEEEEE
Q 001438 541 ILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTI-RNADVIAVV 591 (1077)
Q Consensus 541 illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~-~~~d~i~~l 591 (1077)
++||||||++||+.+.+.+.+.|++.. +++|+|++||+...+ ..||+++++
T Consensus 146 llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~~~~~~~ 198 (201)
T cd03231 146 LWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSEAGARELDL 198 (201)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhhccceeEec
Confidence 999999999999999999999998764 589999999987765 559999876
No 327
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=100.00 E-value=2.1e-37 Score=332.81 Aligned_cols=195 Identities=32% Similarity=0.449 Sum_probs=160.0
Q ss_pred ccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhheeEEccCCCccc-ccHHHHH
Q 001438 400 FDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFA-TTIRENI 478 (1077)
Q Consensus 400 l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~-~ti~~ni 478 (1077)
|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+. ..+|++|++.+|+ .|++||+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~-----~~~~v~q~~~l~~~~tv~e~l 75 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGP-----DRMVVFQNYSLLPWLTVRENI 75 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCh-----hheEEecCcccCCCCCHHHHH
Confidence 579999999999999999999999999999999999999999999999876443 2489999999987 4999999
Q ss_pred hcCC----CCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHH
Q 001438 479 LYGK----DDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAE 554 (1077)
Q Consensus 479 ~~~~----~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~p~illlDEpts~lD~~ 554 (1077)
.++. +..+.++..+. .. +.++.+ |++........+||||||||++||||++.+|+++||||||++||+.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~--~~---~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~ 148 (230)
T TIGR01184 76 ALAVDRVLPDLSKSERRAI--VE---EHIALV--GLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDAL 148 (230)
T ss_pred HHHHHhcccCCCHHHHHHH--HH---HHHHHc--CCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHH
Confidence 8752 11222221111 11 122222 3334455567789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh--CCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHh
Q 001438 555 SENSVQEALDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELI 606 (1077)
Q Consensus 555 ~~~~i~~~l~~~~--~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~ 606 (1077)
+.+.+.+.|+++. .++|+|++||+++.+.. ||+|++|++|++++.|+..+++
T Consensus 149 ~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 203 (230)
T TIGR01184 149 TRGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQILEVP 203 (230)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEecccCceecc
Confidence 9999999998864 37899999999998765 9999999999999998766653
No 328
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.6e-37 Score=349.05 Aligned_cols=212 Identities=30% Similarity=0.481 Sum_probs=179.6
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHH-hhh
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWL-RQQ 459 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~-r~~ 459 (1077)
-++++|++++|+. .++|+|+||++.+||++|++|.||||||||+|+|.|.|+|++|+|.+||++..-.++.+- ...
T Consensus 8 ll~~~~i~K~Fgg---V~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~G 84 (500)
T COG1129 8 LLELRGISKSFGG---VKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAG 84 (500)
T ss_pred eeeeecceEEcCC---ceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCC
Confidence 4889999999974 469999999999999999999999999999999999999999999999999987777654 456
Q ss_pred eeEEccCCCcccc-cHHHHHhcCCCCCC------HHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHH
Q 001438 460 IGLVNQEPALFAT-TIRENILYGKDDAT------MEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAIS 532 (1077)
Q Consensus 460 i~~v~Q~~~lf~~-ti~~ni~~~~~~~~------~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lA 532 (1077)
|+.|+||..|++. ||.|||.+|+.... ..+..+.++. +.+.+ .++...++.++ +||+||||.|+||
T Consensus 85 I~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~--~l~~l-g~~~~~~~~v~----~LsiaqrQ~VeIA 157 (500)
T COG1129 85 IATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARE--LLARL-GLDIDPDTLVG----DLSIAQRQMVEIA 157 (500)
T ss_pred cEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHH--HHHHc-CCCCChhhhhh----hCCHHHHHHHHHH
Confidence 9999999999976 99999999974332 2333332221 22212 11122455554 7999999999999
Q ss_pred HHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHhh-cCEEEEEECCEEEEecCh
Q 001438 533 RAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSH 602 (1077)
Q Consensus 533 Ral~~~p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~ 602 (1077)
||+..+++|+|||||||+|+.+..+.+.+.+++++ +|.++|+||||++.+.. ||||.||.||+.+..++.
T Consensus 158 rAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~~ 229 (500)
T COG1129 158 RALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRPT 229 (500)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeeccc
Confidence 99999999999999999999999999999999986 79999999999999865 999999999999988773
No 329
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=4.4e-37 Score=324.35 Aligned_cols=195 Identities=19% Similarity=0.311 Sum_probs=161.7
Q ss_pred EEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhee
Q 001438 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (1077)
Q Consensus 382 i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 461 (1077)
++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.... ..++++++
T Consensus 2 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~-~~~~~~~~ 77 (204)
T PRK13538 2 LEARNLACERDE---RILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQR-DEYHQDLL 77 (204)
T ss_pred eEEEEEEEEECC---EEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccch-HHhhhheE
Confidence 689999999964 35899999999999999999999999999999999999999999999999987654 45677899
Q ss_pred EEccCCCccc-ccHHHHHhcCCCCC---CHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhcc
Q 001438 462 LVNQEPALFA-TTIRENILYGKDDA---TMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVK 537 (1077)
Q Consensus 462 ~v~Q~~~lf~-~ti~~ni~~~~~~~---~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~ 537 (1077)
|++|++.+++ .|++||+.++.+.. ..+++.++++.. |++........+||||||||++||||+++
T Consensus 78 ~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~-----------gl~~~~~~~~~~LS~G~~qrl~la~al~~ 146 (204)
T PRK13538 78 YLGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQV-----------GLAGFEDVPVRQLSAGQQRRVALARLWLT 146 (204)
T ss_pred EeCCccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHc-----------CCHHHhhCChhhcCHHHHHHHHHHHHHhc
Confidence 9999998886 49999998764221 122222222222 22223344567899999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHhh-cCEEEEE
Q 001438 538 NPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVV 591 (1077)
Q Consensus 538 ~p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~-~d~i~~l 591 (1077)
+|+++||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. .+|++++
T Consensus 147 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~~~~ 202 (204)
T PRK13538 147 RAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASDKVRKLRL 202 (204)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhccCCceEEec
Confidence 999999999999999999999999998864 57899999999999976 5677766
No 330
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2.5e-37 Score=289.33 Aligned_cols=216 Identities=30% Similarity=0.519 Sum_probs=176.6
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCee--CCCCC----HH
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNN--IKGLD----LK 454 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~--~~~~~----~~ 454 (1077)
.|+++|++|.|+.. .+|.||+|+-+.||.+.+.||||+|||||++.|.=+.-|.+|+..|-|.. .++.+ ..
T Consensus 2 sirv~~in~~yg~~---q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~ 78 (242)
T COG4161 2 SIQLNGINCFYGAH---QALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIR 78 (242)
T ss_pred ceEEcccccccccc---hheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHH
Confidence 48899999999754 58999999999999999999999999999999999999999999998764 33332 45
Q ss_pred HHhhheeEEccCCCcccc-cHHHHHhcCCC----CCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHH
Q 001438 455 WLRQQIGLVNQEPALFAT-TIRENILYGKD----DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRI 529 (1077)
Q Consensus 455 ~~r~~i~~v~Q~~~lf~~-ti~~ni~~~~~----~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri 529 (1077)
++|+.+|.|+|+..|.+- ||.||+.-... -...+...+|.++ ++.| .+.......+-.|||||+||+
T Consensus 79 ~lr~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~el------lkrl--rl~~~adr~plhlsggqqqrv 150 (242)
T COG4161 79 DLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKL------LKRL--RLKPYADRYPLHLSGGQQQRV 150 (242)
T ss_pred HHHHhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHH------HHHh--ccccccccCceecccchhhhH
Confidence 789999999999999976 99999864321 1122222223222 2222 122223345668999999999
Q ss_pred HHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHhc
Q 001438 530 AISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELIS 607 (1077)
Q Consensus 530 ~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 607 (1077)
+|||||+.+|++|++||||++|||+-..++.+.|+++. .|.|-++|||..+..+. |.+++.|++|+|+|.|+++-.-+
T Consensus 151 aiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~va~k~as~vvyme~g~ive~g~a~~ft~ 230 (242)
T COG4161 151 AIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCFTE 230 (242)
T ss_pred HHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhHHHhhhhheEeeecCeeEeecchhhccC
Confidence 99999999999999999999999999999999999986 58999999999999976 99999999999999999877643
No 331
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=4.3e-37 Score=323.33 Aligned_cols=194 Identities=27% Similarity=0.417 Sum_probs=160.1
Q ss_pred EEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhee
Q 001438 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (1077)
Q Consensus 382 i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 461 (1077)
++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|+++|+++.. ....+|++++
T Consensus 2 l~~~~l~~~~~~---~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~-~~~~~~~~i~ 77 (200)
T PRK13540 2 LDVIELDFDYHD---QPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKK-DLCTYQKQLC 77 (200)
T ss_pred EEEEEEEEEeCC---eeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCcccc-CHHHHHhheE
Confidence 689999999964 359999999999999999999999999999999999999999999999998864 3456788999
Q ss_pred EEccCCCccc-ccHHHHHhcCCCCC-CHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccCC
Q 001438 462 LVNQEPALFA-TTIRENILYGKDDA-TMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNP 539 (1077)
Q Consensus 462 ~v~Q~~~lf~-~ti~~ni~~~~~~~-~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~p 539 (1077)
|++|++.+++ .|++||+.++.... ....+.+ ..+.+ .+++ .......+||||||||++||||++++|
T Consensus 78 ~~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~------~l~~~-~l~~----~~~~~~~~LS~G~~~rv~laral~~~p 146 (200)
T PRK13540 78 FVGHRSGINPYLTLRENCLYDIHFSPGAVGITE------LCRLF-SLEH----LIDYPCGLLSSGQKRQVALLRLWMSKA 146 (200)
T ss_pred EeccccccCcCCCHHHHHHHHHhcCcchHHHHH------HHHHc-CCch----hhhCChhhcCHHHHHHHHHHHHHhcCC
Confidence 9999999875 69999998763111 1111111 11111 2222 233445689999999999999999999
Q ss_pred CEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHhhcCEEEE
Q 001438 540 SILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRNADVIAV 590 (1077)
Q Consensus 540 ~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~~d~i~~ 590 (1077)
+++||||||++||+.+.+.+.+.|+++. +++|+|++||+.+.+..||.-.+
T Consensus 147 ~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~d~~~~ 198 (200)
T PRK13540 147 KLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLNKADYEEY 198 (200)
T ss_pred CEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhccccchhhc
Confidence 9999999999999999999999999863 58999999999999999997543
No 332
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=4.5e-37 Score=370.91 Aligned_cols=225 Identities=26% Similarity=0.473 Sum_probs=181.2
Q ss_pred cEEEEeEEEEcCCC--------CCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCC
Q 001438 381 HIEFKDVSFCYPSR--------PDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLD 452 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~--------~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~ 452 (1077)
.++++|++++|+.. .+.++|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|+++|+++...+
T Consensus 275 ~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~~G~i~~~g~~i~~~~ 353 (529)
T PRK15134 275 LLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-SQGEIWFDGQPLHNLN 353 (529)
T ss_pred cccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-CCcEEEECCEEccccc
Confidence 58999999999621 12468999999999999999999999999999999999985 8999999999987765
Q ss_pred HHH---HhhheeEEccCC--Ccccc-cHHHHHhcCCC----CCCHHHHHHHHHHHhHHHHHhcCccchh-hhhcCCCCCC
Q 001438 453 LKW---LRQQIGLVNQEP--ALFAT-TIRENILYGKD----DATMEEITRAAKLSEAMSFISNLPERFE-TQVGERGIQL 521 (1077)
Q Consensus 453 ~~~---~r~~i~~v~Q~~--~lf~~-ti~~ni~~~~~----~~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~~~~~g~~L 521 (1077)
... +|++++|++|++ .+++. |++||+.++.. .....+..+ + ..+.++.+ |+. ........+|
T Consensus 354 ~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~--~---~~~~l~~~--~l~~~~~~~~~~~L 426 (529)
T PRK15134 354 RRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQ--Q---VIAVMEEV--GLDPETRHRYPAEF 426 (529)
T ss_pred hhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHH--H---HHHHHHHc--CCCHHHHhcCCccC
Confidence 433 467899999998 36664 99999987521 011111111 1 11222222 232 2345667899
Q ss_pred ChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEccCchhHhh-cCEEEEEECCEEEE
Q 001438 522 SGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVK 598 (1077)
Q Consensus 522 SgGqkqri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~ 598 (1077)
|||||||++||||++.+|++|||||||++||+.+.+.+.+.|+++. .++|+|+|||+++.+.. ||+|++|++|++++
T Consensus 427 SgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~ 506 (529)
T PRK15134 427 SGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGEVVE 506 (529)
T ss_pred CHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999874 37899999999999865 99999999999999
Q ss_pred ecChhHHhcCCCchH
Q 001438 599 TGSHEELISNPNSAY 613 (1077)
Q Consensus 599 ~g~~~~l~~~~~~~~ 613 (1077)
.|+++++.+.+...|
T Consensus 507 ~~~~~~~~~~~~~~~ 521 (529)
T PRK15134 507 QGDCERVFAAPQQEY 521 (529)
T ss_pred EcCHHHHhcCCCChH
Confidence 999999986544444
No 333
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=100.00 E-value=1.9e-36 Score=369.70 Aligned_cols=205 Identities=26% Similarity=0.416 Sum_probs=174.0
Q ss_pred CcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCC---ccEEEECCeeCCCCCHHHHhhheeEEccCCCcccc
Q 001438 396 DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPL---SGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFAT 472 (1077)
Q Consensus 396 ~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~---~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ 472 (1077)
++++|+|+|+++++||+++|+||||||||||+++|+|..+|. +|+|.+||.++. ...+|+.+|||+|++++++.
T Consensus 37 ~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~---~~~~~~~i~yv~Q~~~~~~~ 113 (617)
T TIGR00955 37 RKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPID---AKEMRAISAYVQQDDLFIPT 113 (617)
T ss_pred ccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC---HHHHhhhceeeccccccCcc
Confidence 467999999999999999999999999999999999999885 899999999875 35678899999999999965
Q ss_pred -cHHHHHhcCCCC-----CCHHHHHHHHHHHhHHHHHhcCccchhhhhcCC--CCCCChHHHHHHHHHHHhccCCCEEEE
Q 001438 473 -TIRENILYGKDD-----ATMEEITRAAKLSEAMSFISNLPERFETQVGER--GIQLSGGQKQRIAISRAIVKNPSILLL 544 (1077)
Q Consensus 473 -ti~~ni~~~~~~-----~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~--g~~LSgGqkqri~lARal~~~p~illl 544 (1077)
||+|||.|+... .+.++ +..+.....+.+ ++++..||.+|+. +..||||||||++|||||+.+|++++|
T Consensus 114 lTV~e~l~f~~~~~~~~~~~~~~--~~~~v~~~l~~l-gL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlll 190 (617)
T TIGR00955 114 LTVREHLMFQAHLRMPRRVTKKE--KRERVDEVLQAL-GLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFC 190 (617)
T ss_pred CcHHHHHHHHHhcCCCCCCCHHH--HHHHHHHHHHHc-CchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEe
Confidence 999999886421 12222 222222233322 4566789999984 478999999999999999999999999
Q ss_pred eCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCch-h-HhhcCEEEEEECCEEEEecChhHHh
Q 001438 545 DEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLS-T-IRNADVIAVVQGRKIVKTGSHEELI 606 (1077)
Q Consensus 545 DEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~-~-~~~~d~i~~l~~G~i~~~g~~~~l~ 606 (1077)
|||||+||+.+...+.+.|+++. +|+|+|+++|+++ . .+.+|++++|++|++++.|+++++.
T Consensus 191 DEPtsgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~~ 255 (617)
T TIGR00955 191 DEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAV 255 (617)
T ss_pred eCCCcchhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHHH
Confidence 99999999999999999999875 5899999999996 4 4679999999999999999999875
No 334
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-36 Score=331.62 Aligned_cols=208 Identities=24% Similarity=0.353 Sum_probs=169.9
Q ss_pred cEEEEeEEEEcCCC-----------------CCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEE
Q 001438 381 HIEFKDVSFCYPSR-----------------PDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILL 443 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~-----------------~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~ 443 (1077)
.|+++|++++|... ..+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~ 83 (264)
T PRK13546 4 SVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDR 83 (264)
T ss_pred eEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEE
Confidence 57788887777431 1245899999999999999999999999999999999999999999999
Q ss_pred CCeeCCCCCHHHHhhheeEEccCCCccc-ccHHHHHhcCC--CCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCC
Q 001438 444 DGNNIKGLDLKWLRQQIGLVNQEPALFA-TTIRENILYGK--DDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQ 520 (1077)
Q Consensus 444 ~g~~~~~~~~~~~r~~i~~v~Q~~~lf~-~ti~~ni~~~~--~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~ 520 (1077)
+|. +++++|++.+++ .|++||+.++. ...+.++..+.+. .+.+.. +++..+...+.+
T Consensus 84 ~g~-------------~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~--~~l~~~-----~l~~~~~~~~~~ 143 (264)
T PRK13546 84 NGE-------------VSVIAISAGLSGQLTGIENIEFKMLCMGFKRKEIKAMTP--KIIEFS-----ELGEFIYQPVKK 143 (264)
T ss_pred CCE-------------EeEEecccCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHH--HHHHHc-----CCchhhcCCccc
Confidence 994 678888887775 49999997642 1223333322211 111111 233445567789
Q ss_pred CChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHhh-cCEEEEEECCEEEE
Q 001438 521 LSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVK 598 (1077)
Q Consensus 521 LSgGqkqri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~ 598 (1077)
||||||||++||||++.+|++|||||||++||+.+.+.+.+.|.++. .++|+|++||+++.+.. ||+|++|++|++++
T Consensus 144 LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~~i~~~~d~i~~l~~G~i~~ 223 (264)
T PRK13546 144 YSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLGQVRQFCTKIAWIEGGKLKD 223 (264)
T ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHcCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999998764 58999999999999865 99999999999999
Q ss_pred ecChhHHhcC
Q 001438 599 TGSHEELISN 608 (1077)
Q Consensus 599 ~g~~~~l~~~ 608 (1077)
.|+++++...
T Consensus 224 ~g~~~~~~~~ 233 (264)
T PRK13546 224 YGELDDVLPK 233 (264)
T ss_pred eCCHHHHHHH
Confidence 9999998875
No 335
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.1e-36 Score=323.65 Aligned_cols=197 Identities=21% Similarity=0.314 Sum_probs=162.2
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhe
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 460 (1077)
.++++|++++|++ .++++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++... ..++.+
T Consensus 11 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~---~~~~~i 84 (214)
T PRK13543 11 LLAAHALAFSRNE---EPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRG---DRSRFM 84 (214)
T ss_pred eEEEeeEEEecCC---ceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccch---hhhhce
Confidence 5899999999964 3589999999999999999999999999999999999999999999999988652 345679
Q ss_pred eEEccCCCcccc-cHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhcc
Q 001438 461 GLVNQEPALFAT-TIRENILYGKD--DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVK 537 (1077)
Q Consensus 461 ~~v~Q~~~lf~~-ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~ 537 (1077)
+|++|++.+++. |++||+.++.. ....++ .+ .+..+.+ .+++ .......+||||||||++||||+++
T Consensus 85 ~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~--~~---~~~l~~~-~l~~----~~~~~~~~LS~G~~qrv~laral~~ 154 (214)
T PRK13543 85 AYLGHLPGLKADLSTLENLHFLCGLHGRRAKQ--MP---GSALAIV-GLAG----YEDTLVRQLSAGQKKRLALARLWLS 154 (214)
T ss_pred EEeecCcccccCCcHHHHHHHHHHhcCCcHHH--HH---HHHHHHc-CChh----hccCChhhCCHHHHHHHHHHHHHhc
Confidence 999999998886 99999976432 111111 11 1111211 2332 2344567899999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHhh-cCEEEEEEC
Q 001438 538 NPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQG 593 (1077)
Q Consensus 538 ~p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~-~d~i~~l~~ 593 (1077)
+|+++||||||++||+++.+.+.+.|++.. +++|+|++||+++.+.. ||++++++.
T Consensus 155 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 155 PAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPVRTRMLTLEA 212 (214)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhhhcceEEEEee
Confidence 999999999999999999999999998763 57999999999999865 999999864
No 336
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.3e-37 Score=314.64 Aligned_cols=196 Identities=31% Similarity=0.468 Sum_probs=171.0
Q ss_pred ceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCC----CCHHHHhhheeEEccCCCcccc-cHHH
Q 001438 402 KFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKG----LDLKWLRQQIGLVNQEPALFAT-TIRE 476 (1077)
Q Consensus 402 ~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~----~~~~~~r~~i~~v~Q~~~lf~~-ti~~ 476 (1077)
+++|+.+.-.++||.|+||||||||+|+|.|+..|++|.|.+||.-+.+ +...--+++||||+||..||+- ||+-
T Consensus 16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrg 95 (352)
T COG4148 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRG 95 (352)
T ss_pred EEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEec
Confidence 5888888768999999999999999999999999999999999987643 3444557789999999999976 9999
Q ss_pred HHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHH
Q 001438 477 NILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESE 556 (1077)
Q Consensus 477 ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~p~illlDEpts~lD~~~~ 556 (1077)
|+.||.......+..+.+.+.+.. ..+...+.+||||||||+||+|||+.+|++|++|||+|+||...+
T Consensus 96 NL~YG~~~~~~~~fd~iv~lLGI~-----------hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK 164 (352)
T COG4148 96 NLRYGMWKSMRAQFDQLVALLGIE-----------HLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRK 164 (352)
T ss_pred chhhhhcccchHhHHHHHHHhCcH-----------HHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchh
Confidence 999998766565666666555443 344555678999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhC--CCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHhcC
Q 001438 557 NSVQEALDRVMV--GRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISN 608 (1077)
Q Consensus 557 ~~i~~~l~~~~~--~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 608 (1077)
++++-.|+++.+ +.-++.|||.++.+.+ ||+|++|++|++...|..+|.+..
T Consensus 165 ~EilpylERL~~e~~IPIlYVSHS~~Ev~RLAd~vV~le~GkV~A~g~~e~v~~~ 219 (352)
T COG4148 165 REILPYLERLRDEINIPILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEVWGS 219 (352)
T ss_pred hHHHHHHHHHHHhcCCCEEEEecCHHHHHhhhheEEEecCCeEEecCcHHHHhcC
Confidence 999999988864 6789999999998765 999999999999999999999875
No 337
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=100.00 E-value=4.3e-34 Score=346.39 Aligned_cols=371 Identities=17% Similarity=0.133 Sum_probs=262.7
Q ss_pred hhcccchHHHHHHHHHHHHHhhHHhHH-HHHHHHHHHhhccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 689 SMVRPDWTYGVCGTICAIIAGAQMPLF-ALGVSQALVAYYMDWDTTQREVKKITILFCCAAVITVIVHAIEHLSFGIMGE 767 (1077)
Q Consensus 689 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 767 (1077)
.+.+++++.+..+++++++........ ++....+++... . . ... ...+.++.++..++.+++.++....+.
T Consensus 6 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~lid~~~-~--~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (547)
T PRK10522 6 LVWRQYRWPFISVMALSLASAALGIGLIAFINQRLIETAD-T--S-LLV----LPEFLGLLLLLMAVTLGSQLALTTLGH 77 (547)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-c--c-chH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666555555443332 333344443221 1 0 001 111222233334566778888999999
Q ss_pred HHHHHHHHHHHHHHHcCCccccccccCCchhHHHHHhhcHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 001438 768 RLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQNFGLVTASFVIAFILNWRITLVVV 847 (1077)
Q Consensus 768 ~~~~~Lr~~l~~~llr~p~~FFD~~~~~~G~IlnR~s~D~~~i~~~l~~~l~~~~~~~~~~~~~i~i~~~~~w~l~l~~l 847 (1077)
++..++|.++|+++++.|++||++ +++|++++|+++|++.+...+. .+..++..++.+++.++++++++|+++++++
T Consensus 78 ~~~~~lR~~l~~~ll~~~~~~~~~--~~~g~~lsrl~~dv~~i~~~~~-~l~~~~~~~~~~i~~~~~l~~~~~~l~li~l 154 (547)
T PRK10522 78 HFVYRLRSEFIKRILDTHVERIEQ--LGSASLLASLTSDVRNITIAFV-RLPELVQGIILTLGSAAYLAWLSPKMLLVTA 154 (547)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHhc--cCccchHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 999999999999999999999995 9999999999999999998765 4677888888899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHcchHHHHHhcch---HHHHHHHHHHhhhhhHHHHHHHHHHH
Q 001438 848 ATYPLIISGHISEKLFFQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSE---DKVLELYSRELVEPSKRSFIRGQIAG 924 (1077)
Q Consensus 848 ~~~Pl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Etl~Gi~tIrAf~~e---~~~~~~f~~~~~~~~~~~~~~~~~~~ 924 (1077)
+.+|+.++......+..++...+.++...+..+.+.|.++|+++++ ++.+ +.+.++|.+..++..+...+......
T Consensus 155 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (547)
T PRK10522 155 IWMAVTIWGGFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELT-LNRERAEYVFENEYEPDAQEYRHHIIRADTFHL 233 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhh-ccHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHH
Confidence 9999887776666777776677777888888899999999999995 4443 46778888777776655554444433
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHcCCCCcc
Q 001438 925 IFYGISQFFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLALVPDLLKGNQMAASVFEVLDRKTQVI 1004 (1077)
Q Consensus 925 ~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~ 1004 (1077)
..............++.+++++.+. .+ +.+....+..+......|+..+....++++.+..+.+|+.++++.+++.+
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~l~~~~~~~~ 310 (547)
T PRK10522 234 SAVNWSNIMMLGAIGLVFYMANSLG-WA--DTNVAATYSLTLLFLRTPLLSAVGALPTLLSAQVAFNKLNKLALAPYKAE 310 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh-cC--ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 3333333333333344444444321 12 22222223333333456888889999999999999999999876543221
Q ss_pred CCCCcccccccccEEEeeeeeeCCCCCcccccccceeeeeCCCEEEEECCCCCCHHHHHHHHhhccCCCCCCC
Q 001438 1005 GDIGEELTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKA 1077 (1077)
Q Consensus 1005 ~~~~~~~~~~~G~I~f~nVsf~Y~~~~~~~VLk~vsl~I~~GekVaIVGrTGsGKSTLi~lL~Rfyd~~~G~i 1077 (1077)
.+...+ .+..+.|+|+||+|+||++ .++|+|+||+|+|||++|||||||||||||+++|.|+|+|++|+|
T Consensus 311 ~~~~~~-~~~~~~i~~~~v~f~y~~~--~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i 380 (547)
T PRK10522 311 FPRPQA-FPDWQTLELRNVTFAYQDN--GFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEI 380 (547)
T ss_pred cccccc-cCcCceEEEEEEEEEeCCC--CeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEE
Confidence 111111 1224689999999999853 358999999999999999999999999999999999999999975
No 338
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=2.9e-35 Score=382.65 Aligned_cols=220 Identities=21% Similarity=0.364 Sum_probs=183.7
Q ss_pred ccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhh
Q 001438 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQ 459 (1077)
Q Consensus 380 ~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~ 459 (1077)
..|+++|++++|+++ ++.+++|+||+|++||++||+||||||||||+++|+|+.+|++|+|.++|+++.. +....|++
T Consensus 1936 ~~L~v~nLsK~Y~~~-~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~-~~~~~r~~ 2013 (2272)
T TIGR01257 1936 DILRLNELTKVYSGT-SSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILT-NISDVHQN 2013 (2272)
T ss_pred ceEEEEEEEEEECCC-CceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcc-hHHHHhhh
Confidence 469999999999742 2469999999999999999999999999999999999999999999999999865 45567888
Q ss_pred eeEEccCCCcccc-cHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhc
Q 001438 460 IGLVNQEPALFAT-TIRENILYGKD--DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIV 536 (1077)
Q Consensus 460 i~~v~Q~~~lf~~-ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~ 536 (1077)
|||+||++.+++. |++||+.+... ....++..+.. ... ++.+ |+.........+||||||||++|||||+
T Consensus 2014 IGy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v--~~l---Le~l--gL~~~~dk~~~~LSGGqKqRLslA~ALi 2086 (2272)
T TIGR01257 2014 MGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVA--NWS---IQSL--GLSLYADRLAGTYSGGNKRKLSTAIALI 2086 (2272)
T ss_pred EEEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHH--HHH---HHHc--CCHHHhcCChhhCCHHHHHHHHHHHHHh
Confidence 9999999998865 99999976321 11222222111 111 2222 3334455667789999999999999999
Q ss_pred cCCCEEEEeCcCCCCCHHHHHHHHHHHHHH-hCCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHhcC
Q 001438 537 KNPSILLLDEATSALDAESENSVQEALDRV-MVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISN 608 (1077)
Q Consensus 537 ~~p~illlDEpts~lD~~~~~~i~~~l~~~-~~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 608 (1077)
.+|+|++|||||+|||+.+++.+.+.|+++ .+|+|+|++||+++.++. ||||++|++|+++..|+++++.++
T Consensus 2087 ~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e~lcDrV~IL~~G~i~~~Gs~q~Lk~~ 2160 (2272)
T TIGR01257 2087 GCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHLKSK 2160 (2272)
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHH
Confidence 999999999999999999999999999886 458999999999999876 999999999999999999998654
No 339
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=100.00 E-value=1.7e-36 Score=325.27 Aligned_cols=204 Identities=29% Similarity=0.392 Sum_probs=160.1
Q ss_pred EEEEeEEEEcCCC---C-CcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEEC--Ce--eCCCCCH
Q 001438 382 IEFKDVSFCYPSR---P-DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLD--GN--NIKGLDL 453 (1077)
Q Consensus 382 i~~~~v~~~y~~~---~-~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~--g~--~~~~~~~ 453 (1077)
++++|++++|+.. . ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++ |. ++..++.
T Consensus 2 l~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~ 81 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASP 81 (224)
T ss_pred EEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCH
Confidence 6899999999631 1 1368999999999999999999999999999999999999999999998 43 6655554
Q ss_pred HH---H-hhheeEEccCCCcccc-cHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHH
Q 001438 454 KW---L-RQQIGLVNQEPALFAT-TIRENILYGKD--DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQK 526 (1077)
Q Consensus 454 ~~---~-r~~i~~v~Q~~~lf~~-ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqk 526 (1077)
.. + +++++|++|++.+++. |++||+.++.. ....++..+. ..+..+.+ .+++. .....+.+||||||
T Consensus 82 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~--~~~~l~~~-~l~~~---~~~~~~~~LS~G~~ 155 (224)
T TIGR02324 82 REVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARAR--ARELLARL-NIPER---LWHLPPATFSGGEQ 155 (224)
T ss_pred HHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHH--HHHHHHHc-CCchh---hhhCCcccCCHHHH
Confidence 43 3 3579999999998875 99999976421 1122221111 11122211 22221 12345778999999
Q ss_pred HHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHh-hcCEEEEE
Q 001438 527 QRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIR-NADVIAVV 591 (1077)
Q Consensus 527 qri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~-~~d~i~~l 591 (1077)
||++||||++.+|+++||||||++||+++.+.+.+.|+++. +++|+|++||+++.+. .||+++.+
T Consensus 156 qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~~~d~i~~~ 222 (224)
T TIGR02324 156 QRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRELVADRVMDV 222 (224)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceeEec
Confidence 99999999999999999999999999999999999998874 4889999999999886 59999876
No 340
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=4.6e-36 Score=343.66 Aligned_cols=208 Identities=24% Similarity=0.341 Sum_probs=168.4
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhe
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 460 (1077)
.++++|++|.|+++...++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+.
T Consensus 21 mL~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~------------ 88 (549)
T PRK13545 21 FDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAA------------ 88 (549)
T ss_pred eeEEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEee------------
Confidence 58999999999765445689999999999999999999999999999999999999999999999751
Q ss_pred eEEccCCCccc-ccHHHHHhcCC--CCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhcc
Q 001438 461 GLVNQEPALFA-TTIRENILYGK--DDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVK 537 (1077)
Q Consensus 461 ~~v~Q~~~lf~-~ti~~ni~~~~--~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~ 537 (1077)
++.+.+.+++ .|++||+.++. ...+.++..+.+ ..+.+.+ |++......+.+||||||||++|||||+.
T Consensus 89 -~i~~~~~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i--~elLe~l-----gL~~~ld~~~~~LSGGQrQRVaLArAL~~ 160 (549)
T PRK13545 89 -LIAISSGLNGQLTGIENIELKGLMMGLTKEKIKEII--PEIIEFA-----DIGKFIYQPVKTYSSGMKSRLGFAISVHI 160 (549)
T ss_pred -eEEeccccCCCCcHHHHHHhhhhhcCCCHHHHHHHH--HHHHHHc-----CChhHhhCCcccCCHHHHHHHHHHHHHHh
Confidence 2233444444 49999997643 122233322211 1122221 23334455677999999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHhcC
Q 001438 538 NPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISN 608 (1077)
Q Consensus 538 ~p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 608 (1077)
+|++|||||||++||+.+.+.+.+.|+++. +|+|+|++||+++.+.. ||++++|++|++++.|+++++..+
T Consensus 161 ~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~~i~~l~DrIivL~~GkIv~~G~~~el~~~ 233 (549)
T PRK13545 161 NPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKEVVDH 233 (549)
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHhh
Confidence 999999999999999999999999998864 58999999999999865 999999999999999999998764
No 341
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=2.8e-36 Score=363.59 Aligned_cols=224 Identities=28% Similarity=0.461 Sum_probs=175.9
Q ss_pred cEEEEeEEEEcCC--CCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEEC-Cee---CCCCC--
Q 001438 381 HIEFKDVSFCYPS--RPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLD-GNN---IKGLD-- 452 (1077)
Q Consensus 381 ~i~~~~v~~~y~~--~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~-g~~---~~~~~-- 452 (1077)
.++++|++++|++ ..+.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++ |.+ +...+
T Consensus 279 ~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~ 358 (520)
T TIGR03269 279 IIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPD 358 (520)
T ss_pred eEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchh
Confidence 5999999999963 122468999999999999999999999999999999999999999999996 643 33332
Q ss_pred -HHHHhhheeEEccCCCcccc-cHHHHHhcCCC-CCCHHHHHHHHHHHhHHHHHhcCccc-hhhhhcCCCCCCChHHHHH
Q 001438 453 -LKWLRQQIGLVNQEPALFAT-TIRENILYGKD-DATMEEITRAAKLSEAMSFISNLPER-FETQVGERGIQLSGGQKQR 528 (1077)
Q Consensus 453 -~~~~r~~i~~v~Q~~~lf~~-ti~~ni~~~~~-~~~~~~~~~~~~~~~~~~~i~~l~~g-~~t~~~~~g~~LSgGqkqr 528 (1077)
...+|++++|+||++.+|+. |++||+.++.. ....++.. .+.....+.+ .+++- .+........+||||||||
T Consensus 359 ~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~--~~~~~~l~~~-~l~~~~~~~~~~~~~~~LSgGq~qr 435 (520)
T TIGR03269 359 GRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELAR--MKAVITLKMV-GFDEEKAEEILDKYPDELSEGERHR 435 (520)
T ss_pred hHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCHHHHH--HHHHHHHHhC-CCCCccchhhhhCChhhCCHHHHHH
Confidence 23456789999999988875 99999976321 11111111 1111122221 12210 0113455677899999999
Q ss_pred HHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHH
Q 001438 529 IAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEEL 605 (1077)
Q Consensus 529 i~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 605 (1077)
++|||||+.+|++|||||||++||+.+.+.+.+.|+++. .++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 436 v~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 515 (520)
T TIGR03269 436 VALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDPEEI 515 (520)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 999999999999999999999999999999999998874 37999999999999865 999999999999999999887
Q ss_pred hc
Q 001438 606 IS 607 (1077)
Q Consensus 606 ~~ 607 (1077)
.+
T Consensus 516 ~~ 517 (520)
T TIGR03269 516 VE 517 (520)
T ss_pred Hh
Confidence 54
No 342
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=3.4e-36 Score=318.11 Aligned_cols=194 Identities=26% Similarity=0.328 Sum_probs=160.2
Q ss_pred EEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhee
Q 001438 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (1077)
Q Consensus 382 i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 461 (1077)
++++|+++.|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. . ..|++++
T Consensus 3 l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~--~-~~~~~~~ 76 (207)
T PRK13539 3 LEGEDLACVRGG---RVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDD--P-DVAEACH 76 (207)
T ss_pred EEEEeEEEEECC---eEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcc--h-hhHhhcE
Confidence 789999999964 358999999999999999999999999999999999999999999999998753 2 2778899
Q ss_pred EEccCCCcc-cccHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccC
Q 001438 462 LVNQEPALF-ATTIRENILYGKD--DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKN 538 (1077)
Q Consensus 462 ~v~Q~~~lf-~~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~ 538 (1077)
|++|++.++ ..|++||+.+... ....+++.++++..++ .........+||||||||++||||++++
T Consensus 77 ~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LS~G~~qrl~la~al~~~ 145 (207)
T PRK13539 77 YLGHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGL-----------APLAHLPFGYLSAGQKRRVALARLLVSN 145 (207)
T ss_pred EecCCCcCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCC-----------HHHHcCChhhcCHHHHHHHHHHHHHhcC
Confidence 999988776 4699999976432 1222233333332222 2222344568999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHHH-hCCCeEEEEccCchhHhhcCEEEEEEC
Q 001438 539 PSILLLDEATSALDAESENSVQEALDRV-MVGRTTVVVAHRLSTIRNADVIAVVQG 593 (1077)
Q Consensus 539 p~illlDEpts~lD~~~~~~i~~~l~~~-~~~~t~i~vtH~~~~~~~~d~i~~l~~ 593 (1077)
|+++||||||++||+.+.+.+.+.|++. .+++|+|++||+++.+.. |+++.++.
T Consensus 146 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~-~~~~~~~~ 200 (207)
T PRK13539 146 RPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG-ARELDLGP 200 (207)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc-CcEEeecC
Confidence 9999999999999999999999999875 458999999999999988 99987754
No 343
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.3e-36 Score=362.78 Aligned_cols=218 Identities=20% Similarity=0.375 Sum_probs=176.2
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccC-CCccEEEECCeeCCCCCH-HHHhh
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYE-PLSGEILLDGNNIKGLDL-KWLRQ 458 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~-~~~G~i~~~g~~~~~~~~-~~~r~ 458 (1077)
.|+++|+++.|+...+.++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++...+. +..++
T Consensus 259 ~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~ 338 (506)
T PRK13549 259 ILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQ 338 (506)
T ss_pred eEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHC
Confidence 5899999999953223458999999999999999999999999999999999998 599999999999875543 34567
Q ss_pred heeEEccCC---Cccc-ccHHHHHhcCCC-CC------CHHHHHHHHHHHhHHHHHhcCccchh-hhhcCCCCCCChHHH
Q 001438 459 QIGLVNQEP---ALFA-TTIRENILYGKD-DA------TMEEITRAAKLSEAMSFISNLPERFE-TQVGERGIQLSGGQK 526 (1077)
Q Consensus 459 ~i~~v~Q~~---~lf~-~ti~~ni~~~~~-~~------~~~~~~~~~~~~~~~~~i~~l~~g~~-t~~~~~g~~LSgGqk 526 (1077)
.++|++|++ .+++ .|+.||+.++.. .. ..++.. . ...+.++.+ |+. ........+||||||
T Consensus 339 ~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~--~---~~~~~l~~~--~l~~~~~~~~~~~LSgG~k 411 (506)
T PRK13549 339 GIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAEL--K---TILESIQRL--KVKTASPELAIARLSGGNQ 411 (506)
T ss_pred CCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHH--H---HHHHHHHhc--CccCCCcccccccCCHHHH
Confidence 899999996 4665 499999987531 00 111111 1 122223333 232 124556679999999
Q ss_pred HHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhH
Q 001438 527 QRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEE 604 (1077)
Q Consensus 527 qri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~ 604 (1077)
||++||||++.+|++|||||||++||+.+.+.+.+.|+++. +|+|+|++||+++.+.. ||++++|++|+++..|+.++
T Consensus 412 qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~v~~l~~G~i~~~~~~~~ 491 (506)
T PRK13549 412 QKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKLKGDLINHN 491 (506)
T ss_pred HHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEecccc
Confidence 99999999999999999999999999999999999998864 58999999999999865 99999999999999998877
Q ss_pred H
Q 001438 605 L 605 (1077)
Q Consensus 605 l 605 (1077)
+
T Consensus 492 ~ 492 (506)
T PRK13549 492 L 492 (506)
T ss_pred C
Confidence 5
No 344
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=100.00 E-value=2.3e-36 Score=317.41 Aligned_cols=193 Identities=20% Similarity=0.279 Sum_probs=157.0
Q ss_pred EEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhee
Q 001438 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (1077)
Q Consensus 382 i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 461 (1077)
++++|+++.|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.... ..++++++
T Consensus 1 l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 76 (198)
T TIGR01189 1 LAARNLACSRGE---RMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQR-DEPHRNIL 76 (198)
T ss_pred CEEEEEEEEECC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccch-HHhhhheE
Confidence 478999999964 35899999999999999999999999999999999999999999999999987664 45677899
Q ss_pred EEccCCCccc-ccHHHHHhcCCCCCC--HHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccC
Q 001438 462 LVNQEPALFA-TTIRENILYGKDDAT--MEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKN 538 (1077)
Q Consensus 462 ~v~Q~~~lf~-~ti~~ni~~~~~~~~--~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~ 538 (1077)
|++|++.+++ .|++||+.+...... .+++.++++..+ ++........+||||||||++||||++++
T Consensus 77 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LS~G~~qrv~la~al~~~ 145 (198)
T TIGR01189 77 YLGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVG-----------LTGFEDLPAAQLSAGQQRRLALARLWLSR 145 (198)
T ss_pred EeccCcccccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcC-----------CHHHhcCChhhcCHHHHHHHHHHHHHhcC
Confidence 9999998887 599999976532111 122333333222 22223445568999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHHH-hCCCeEEEEccCchhHhhcCEEEE
Q 001438 539 PSILLLDEATSALDAESENSVQEALDRV-MVGRTTVVVAHRLSTIRNADVIAV 590 (1077)
Q Consensus 539 p~illlDEpts~lD~~~~~~i~~~l~~~-~~~~t~i~vtH~~~~~~~~d~i~~ 590 (1077)
|+++||||||++||+.+.+.+.+.|+++ .+++|+|++||+...+. |++++.
T Consensus 146 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~-~~~~~~ 197 (198)
T TIGR01189 146 APLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLGLV-EARELR 197 (198)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEccccccc-ceEEee
Confidence 9999999999999999999999999886 45889999999985433 355543
No 345
>PLN03211 ABC transporter G-25; Provisional
Probab=100.00 E-value=2.3e-36 Score=368.09 Aligned_cols=204 Identities=26% Similarity=0.405 Sum_probs=170.2
Q ss_pred cccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCC--ccEEEECCeeCCCCCHHHHhhheeEEccCCCcccc-c
Q 001438 397 VAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPL--SGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFAT-T 473 (1077)
Q Consensus 397 ~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~--~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~-t 473 (1077)
+.+|+|+|+++++||++||+||||||||||+++|+|..+|. +|+|.+||+++.. ..++++|||+|++.+++. |
T Consensus 81 ~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~----~~~~~i~yv~Q~~~l~~~lT 156 (659)
T PLN03211 81 RTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTK----QILKRTGFVTQDDILYPHLT 156 (659)
T ss_pred CeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECch----hhccceEEECcccccCCcCC
Confidence 46999999999999999999999999999999999999885 8999999998742 345679999999999965 9
Q ss_pred HHHHHhcCC----C-CCCHHHHHHHHHHHhHHHHHhcCccchhhhhcC-CCCCCChHHHHHHHHHHHhccCCCEEEEeCc
Q 001438 474 IRENILYGK----D-DATMEEITRAAKLSEAMSFISNLPERFETQVGE-RGIQLSGGQKQRIAISRAIVKNPSILLLDEA 547 (1077)
Q Consensus 474 i~~ni~~~~----~-~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~-~g~~LSgGqkqri~lARal~~~p~illlDEp 547 (1077)
++||+.++. + ..+.++..+. .....+.+ ++++..||.+|+ .+..||||||||++|||||+.+|+||+||||
T Consensus 157 V~E~l~~~a~~~~~~~~~~~~~~~~--v~~~l~~l-gL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEP 233 (659)
T PLN03211 157 VRETLVFCSLLRLPKSLTKQEKILV--AESVISEL-GLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEP 233 (659)
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHH--HHHHHHHc-CChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCC
Confidence 999998753 1 1222222111 11222222 355566888875 4678999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchh-H-hhcCEEEEEECCEEEEecChhHHhc
Q 001438 548 TSALDAESENSVQEALDRVM-VGRTTVVVAHRLST-I-RNADVIAVVQGRKIVKTGSHEELIS 607 (1077)
Q Consensus 548 ts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~-~-~~~d~i~~l~~G~i~~~g~~~~l~~ 607 (1077)
|++||+.++..+.+.|+++. +|+|+|+++|+++. + +.+|+|++|++|++++.|+++++.+
T Consensus 234 tsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~~ 296 (659)
T PLN03211 234 TSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMA 296 (659)
T ss_pred CCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHHH
Confidence 99999999999999999875 58999999999984 4 5699999999999999999999863
No 346
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=100.00 E-value=2.9e-36 Score=322.35 Aligned_cols=197 Identities=27% Similarity=0.387 Sum_probs=155.2
Q ss_pred EEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhee
Q 001438 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (1077)
Q Consensus 382 i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 461 (1077)
+.++|+++.|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...
T Consensus 23 l~~~~~~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~---------- 89 (224)
T cd03220 23 LGILGRKGEVGE---FWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLL---------- 89 (224)
T ss_pred hhhhhhhhhcCC---eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhh----------
Confidence 677888888864 4699999999999999999999999999999999999999999999999875311
Q ss_pred EEccCCCcc-cccHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccC
Q 001438 462 LVNQEPALF-ATTIRENILYGKD--DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKN 538 (1077)
Q Consensus 462 ~v~Q~~~lf-~~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~ 538 (1077)
.+...++ +.|++||+.++.. ..+.++..+ +...+.+.+ .+++. ......+||||||||++||||++.+
T Consensus 90 --~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~--~~~~~l~~~-~l~~~----~~~~~~~LSgG~~qrv~laral~~~ 160 (224)
T cd03220 90 --GLGGGFNPELTGRENIYLNGRLLGLSRKEIDE--KIDEIIEFS-ELGDF----IDLPVKTYSSGMKARLAFAIATALE 160 (224)
T ss_pred --cccccCCCCCcHHHHHHHHHHHcCCCHHHHHH--HHHHHHHHc-CChhh----hhCChhhCCHHHHHHHHHHHHHhcC
Confidence 1112222 4699999987532 112222211 111222222 23333 3445568999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHhh-cCEEEEEECCEEEEec
Q 001438 539 PSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTG 600 (1077)
Q Consensus 539 p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g 600 (1077)
|+++||||||++||+.+++.+.+.|++.. +++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 161 p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 224 (224)
T cd03220 161 PDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224 (224)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999999998864 46899999999998865 9999999999998765
No 347
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=2.6e-36 Score=363.06 Aligned_cols=192 Identities=22% Similarity=0.322 Sum_probs=152.0
Q ss_pred eEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEE-----------ECCeeCCCCCHH
Q 001438 386 DVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEIL-----------LDGNNIKGLDLK 454 (1077)
Q Consensus 386 ~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~-----------~~g~~~~~~~~~ 454 (1077)
+++++|+.+ ..+|++++ .+++||++||+||||||||||+++|+|+++|++|+|. ++|.++.++..+
T Consensus 78 ~~~~~yg~~--~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~ 154 (590)
T PRK13409 78 EPVHRYGVN--GFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKK 154 (590)
T ss_pred CceEEecCC--ceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHH
Confidence 478999632 35899999 9999999999999999999999999999999999997 899887654321
Q ss_pred --HHhhh----eeEEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHH
Q 001438 455 --WLRQQ----IGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQR 528 (1077)
Q Consensus 455 --~~r~~----i~~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqr 528 (1077)
..+.+ ++|++|.|.+|.+|++||+.... ..+++.+.+ +.+ |++........+||||||||
T Consensus 155 ~~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~~---~~~~~~~~l---------~~l--~l~~~~~~~~~~LSgGe~qr 220 (590)
T PRK13409 155 LYNGEIKVVHKPQYVDLIPKVFKGKVRELLKKVD---ERGKLDEVV---------ERL--GLENILDRDISELSGGELQR 220 (590)
T ss_pred HhccCcceeecccchhhhhhhhcchHHHHHHhhh---HHHHHHHHH---------HHc--CCchhhcCChhhCCHHHHHH
Confidence 11123 44555567778889999996421 111122222 122 23333455667899999999
Q ss_pred HHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhh-cCEEEEEECC
Q 001438 529 IAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGR 594 (1077)
Q Consensus 529 i~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~-~d~i~~l~~G 594 (1077)
++||||++++|++|||||||++||+.+...+.+.|+++.+++|+|+|||+++.+.. ||+|++|+++
T Consensus 221 v~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~g~tvIivsHd~~~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 221 VAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAEGKYVLVVEHDLAVLDYLADNVHIAYGE 287 (590)
T ss_pred HHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 99999999999999999999999999999999999987568999999999999876 9999999763
No 348
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=100.00 E-value=6.7e-36 Score=366.47 Aligned_cols=219 Identities=32% Similarity=0.489 Sum_probs=186.1
Q ss_pred cEEEEeEEEEcCCCC-CcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHH---
Q 001438 381 HIEFKDVSFCYPSRP-DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWL--- 456 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~-~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~--- 456 (1077)
.++++|++++|++.. .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||+++...+.+++
T Consensus 4 ~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 83 (648)
T PRK10535 4 LLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQL 83 (648)
T ss_pred EEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHH
Confidence 489999999996421 2468999999999999999999999999999999999999999999999999998876653
Q ss_pred -hhheeEEccCCCcccc-cHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHH
Q 001438 457 -RQQIGLVNQEPALFAT-TIRENILYGKDD--ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAIS 532 (1077)
Q Consensus 457 -r~~i~~v~Q~~~lf~~-ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lA 532 (1077)
|+.++|++|++.+|+. |+.||+.++... ...++.. ....+.++.+ |++..+...+.+||||||||++||
T Consensus 84 ~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~-----~~~~~~l~~l--gl~~~~~~~~~~LS~Gq~qrv~LA 156 (648)
T PRK10535 84 RREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRL-----LRAQELLQRL--GLEDRVEYQPSQLSGGQQQRVSIA 156 (648)
T ss_pred HhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHHH-----HHHHHHHHHC--CChhhhcCCcccCCHHHHHHHHHH
Confidence 5689999999999975 999999864311 1111111 1122333333 555667777889999999999999
Q ss_pred HHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHhhcCEEEEEECCEEEEecChhHHh
Q 001438 533 RAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELI 606 (1077)
Q Consensus 533 Ral~~~p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~ 606 (1077)
||++++|+++||||||++||+.+.+.+.+.|+++. +++|+|++||+++.++.||++++|++|+++++|+.+|..
T Consensus 157 raL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 231 (648)
T PRK10535 157 RALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIVRNPPAQEKV 231 (648)
T ss_pred HHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHhCCEEEEEECCEEEeecCccccc
Confidence 99999999999999999999999999999998875 589999999999998889999999999999999999875
No 349
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=100.00 E-value=6.1e-36 Score=330.68 Aligned_cols=211 Identities=29% Similarity=0.498 Sum_probs=177.9
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCH-HHHhhh
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDL-KWLRQQ 459 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~-~~~r~~ 459 (1077)
.++++++++.|| ...+++||||+|++||+.|++|+||+|||||+++|.|+|+|++|+|++||++++-.++ +..|..
T Consensus 4 ~l~~~~itK~f~---~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~G 80 (501)
T COG3845 4 ALEMRGITKRFP---GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLG 80 (501)
T ss_pred eEEEeccEEEcC---CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcC
Confidence 589999999998 3568999999999999999999999999999999999999999999999999986665 456778
Q ss_pred eeEEccCCCcccc-cHHHHHhcCCCCC-----CHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHH
Q 001438 460 IGLVNQEPALFAT-TIRENILYGKDDA-----TMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISR 533 (1077)
Q Consensus 460 i~~v~Q~~~lf~~-ti~~ni~~~~~~~-----~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lAR 533 (1077)
||.|.|++.|++. |+.|||.+|.+.. +..+..+ +...+.+ . .|++-...++...||-|||||+.|-+
T Consensus 81 IGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~--~i~~l~~---~--yGl~vdp~~~V~dLsVG~qQRVEIlK 153 (501)
T COG3845 81 IGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARA--RIKELSE---R--YGLPVDPDAKVADLSVGEQQRVEILK 153 (501)
T ss_pred CcEEeeccccccccchhhhhhhcCccccccccCHHHHHH--HHHHHHH---H--hCCCCCccceeecCCcchhHHHHHHH
Confidence 9999999999977 9999999998532 2222221 1111111 1 13333344555689999999999999
Q ss_pred HhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHhh-cCEEEEEECCEEEEecC
Q 001438 534 AIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGS 601 (1077)
Q Consensus 534 al~~~p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~ 601 (1077)
|||++|++||||||||-|-|...+.+.+.++++. .|+|+|+|||+++.+.. |||+-||.+|+++..-+
T Consensus 154 aLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvgt~~ 223 (501)
T COG3845 154 ALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVGTVD 223 (501)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEEeeec
Confidence 9999999999999999999999999999999875 69999999999999876 99999999999876544
No 350
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=100.00 E-value=2.9e-36 Score=314.69 Aligned_cols=178 Identities=31% Similarity=0.523 Sum_probs=143.7
Q ss_pred cccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCC--CCHHHHhhheeEEccCC--Ccccc
Q 001438 397 VAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKG--LDLKWLRQQIGLVNQEP--ALFAT 472 (1077)
Q Consensus 397 ~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~--~~~~~~r~~i~~v~Q~~--~lf~~ 472 (1077)
..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. .....+++.++|++|+| .+|+.
T Consensus 5 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 84 (190)
T TIGR01166 5 PEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFAA 84 (190)
T ss_pred cceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccccc
Confidence 458999999999999999999999999999999999999999999999999852 23446678899999998 47778
Q ss_pred cHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCcCCC
Q 001438 473 TIRENILYGKD--DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSA 550 (1077)
Q Consensus 473 ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~p~illlDEpts~ 550 (1077)
|++||+.++.. ..+.++..+. .... ++.+ |++........+||||||||++||||++.+|+++||||||++
T Consensus 85 tv~~nl~~~~~~~~~~~~~~~~~--~~~~---l~~~--~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~ 157 (190)
T TIGR01166 85 DVDQDVAFGPLNLGLSEAEVERR--VREA---LTAV--GASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAG 157 (190)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHH--HHHH---HHHc--CchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence 99999987531 1222222111 1111 1111 233334556678999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHh-CCCeEEEEccCchh
Q 001438 551 LDAESENSVQEALDRVM-VGRTTVVVAHRLST 581 (1077)
Q Consensus 551 lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~ 581 (1077)
||+.+.+.+.+.|+++. +++|+|++||+++.
T Consensus 158 LD~~~~~~~~~~l~~~~~~~~tili~sH~~~~ 189 (190)
T TIGR01166 158 LDPAGREQMLAILRRLRAEGMTVVISTHDVDL 189 (190)
T ss_pred CCHHHHHHHHHHHHHHHHcCCEEEEEeecccc
Confidence 99999999999998874 48899999999864
No 351
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=100.00 E-value=5.2e-36 Score=320.39 Aligned_cols=189 Identities=23% Similarity=0.455 Sum_probs=153.8
Q ss_pred EEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhheeEEccCCCc---ccccHHHHHhcC
Q 001438 405 LDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPAL---FATTIRENILYG 481 (1077)
Q Consensus 405 l~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l---f~~ti~~ni~~~ 481 (1077)
|++++||+++|+||||||||||+++|+|+++|++|+|.+||+++. ..+++++|+||++.+ ++.|++||+.++
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~-----~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~ 75 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPG-----KGWRHIGYVPQRHEFAWDFPISVAHTVMSG 75 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccch-----HhhCcEEEecccccccCCCCccHHHHHHhc
Confidence 578999999999999999999999999999999999999998763 346789999999876 457999999875
Q ss_pred CCC-------CCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHH
Q 001438 482 KDD-------ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAE 554 (1077)
Q Consensus 482 ~~~-------~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~p~illlDEpts~lD~~ 554 (1077)
... ...+...++ ..+.+.+ |++........+||||||||++||||++.+|+++||||||++||+.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~---~~~l~~~-----~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~ 147 (223)
T TIGR03771 76 RTGHIGWLRRPCVADFAAV---RDALRRV-----GLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMP 147 (223)
T ss_pred cccccccccCCcHHHHHHH---HHHHHHh-----CCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHH
Confidence 310 111111111 1111211 2223344556689999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh-CCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHhc
Q 001438 555 SENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELIS 607 (1077)
Q Consensus 555 ~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 607 (1077)
+++.+.+.|+++. +++|+|++||+++.+.. ||+|+++ +|++++.|+++++.+
T Consensus 148 ~~~~l~~~l~~~~~~~~tvii~sH~~~~~~~~~d~i~~l-~G~i~~~~~~~~~~~ 201 (223)
T TIGR03771 148 TQELLTELFIELAGAGTAILMTTHDLAQAMATCDRVVLL-NGRVIADGTPQQLQD 201 (223)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHHhcC
Confidence 9999999998875 58899999999998865 9999999 899999999999865
No 352
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=100.00 E-value=2.5e-33 Score=343.90 Aligned_cols=389 Identities=12% Similarity=0.015 Sum_probs=307.8
Q ss_pred HHHHHhhcccchH-----HHHHHHHHHHHHhhHHhHHHHHHHHHHHhhccCch-hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 684 AIKLYSMVRPDWT-----YGVCGTICAIIAGAQMPLFALGVSQALVAYYMDWD-TTQREVKKITILFCCAAVITVIVHAI 757 (1077)
Q Consensus 684 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~ 757 (1077)
..+++++.+|||. ++.++.++.++........++..+.+++....... ........+.++++++.++..+..++
T Consensus 79 ~~~l~~~~~p~~~~~~~~~l~~~~~~~~~~t~~~l~~~~l~~~iid~l~~~~~~~f~~~l~~~~l~~~~~~~~~~~~~~~ 158 (659)
T TIGR00954 79 LDFLLKILIPRVFCKETGLLILIAFLLVSRTYLSVYVATLDGQIESSIVRRSPRNFAWILFKWFLIAPPASFINSAIKYL 158 (659)
T ss_pred HHHHHHHHcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566788889886 46666666666667777788888888776543111 00011222334445555666677777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccccCCchhHHHHHhhcHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 001438 758 EHLSFGIMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQNFGLVTASFVIAFI 837 (1077)
Q Consensus 758 ~~~~~~~~~~~~~~~Lr~~l~~~llr~p~~FFD~~~~~~G~IlnR~s~D~~~i~~~l~~~l~~~~~~~~~~~~~i~i~~~ 837 (1077)
+.++......++..++|++.|++....+++||| +++|.+++|+++|++.+.+.+...+..++..++.+++.++.++.
T Consensus 159 ~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~~~d---~~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii~~~~~L~~ 235 (659)
T TIGR00954 159 LKELKLRFRVRLTRYLYSKYLSGFTFYKVSNLD---SRIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVILYSFKLLT 235 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCceEEeccCC---CCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788888889999999999999999999999999 47899999999999999999999999999999999988887776
Q ss_pred -HhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHcchHHHHHhcchHHHHHHHHHHhhhhhHHH
Q 001438 838 -LNWRITLVVVATYPLIISGHISEKLFFQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRS 916 (1077)
Q Consensus 838 -~~w~l~l~~l~~~Pl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Etl~Gi~tIrAf~~e~~~~~~f~~~~~~~~~~~ 916 (1077)
.+|++++++++.+|+.++...+..+.+.+...+.++...+.....+|.++|+++||+|+.|+.+.++|.+..++..+..
T Consensus 236 ~~~~~l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~~~~ 315 (659)
T TIGR00954 236 ALGSVGPAGLFAYLFATGVVLTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVEHL 315 (659)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998888888888888889999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHH-HHHHHHHHhh-c----CCCCHHHHHH-HHHH---HHHHHHHHHHHHhhhhhHHH
Q 001438 917 FIRGQIAGIFYGISQFFIFSS-YGL-ALWYGSVLMG-K----ELASFKSVMK-SFMV---LIVTALAMGETLALVPDLLK 985 (1077)
Q Consensus 917 ~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~g~~l~~-~----~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~ 985 (1077)
.+.....+...++.+++.... ..+ .++.|...+. . |.++.+.+++ ++.+ +.....+++.+.....+++.
T Consensus 316 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~~~~~~g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~i~~ 395 (659)
T TIGR00954 316 NLIIKFRFSYGFLDNIVAKYTWSAVGLVAVSIPIFDKTHPAFLEMSEEELMQEFYNNGRLLLKAADALGRLMLAGRDMTR 395 (659)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888887775432 222 2233332332 2 6788887766 3333 34557788999999999999
Q ss_pred HHHHHHHHHHHHcCCCCccC---------C--CC-------------cccccccccEEEeeeeeeCCCCCccccccccee
Q 001438 986 GNQMAASVFEVLDRKTQVIG---------D--IG-------------EELTNVEGTIELRGVHFSYPSRPEVVIFKDFNL 1041 (1077)
Q Consensus 986 ~~~a~~ri~~~l~~~~~~~~---------~--~~-------------~~~~~~~G~I~f~nVsf~Y~~~~~~~VLk~vsl 1041 (1077)
+..+.+|++++++.++++.. + .+ .......|.|+|+||+|+||++ .++|+|+||
T Consensus 396 ~~~~~~Ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~~--~~il~~isl 473 (659)
T TIGR00954 396 LAGFTARVDTLLQVLDDVKSGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPNG--DVLIESLSF 473 (659)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccccccccccccccccccccccccccccccCCCeEEEEeeEEECCCC--CeeeecceE
Confidence 99999999999975433210 0 00 0011234679999999999743 258999999
Q ss_pred eeeCCCEEEEECCCCCCHHHHHHHHhhccCCCCCCC
Q 001438 1042 KVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKA 1077 (1077)
Q Consensus 1042 ~I~~GekVaIVGrTGsGKSTLi~lL~Rfyd~~~G~i 1077 (1077)
+|++||++|||||+|||||||+++|.|+|+|++|+|
T Consensus 474 ~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i 509 (659)
T TIGR00954 474 EVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRL 509 (659)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeE
Confidence 999999999999999999999999999999999975
No 353
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=8.4e-36 Score=357.99 Aligned_cols=217 Identities=18% Similarity=0.320 Sum_probs=173.2
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCC-CccEEEECCeeCCCCCH-HHHhh
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEP-LSGEILLDGNNIKGLDL-KWLRQ 458 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~-~~G~i~~~g~~~~~~~~-~~~r~ 458 (1077)
.++++|++++|+...+..+|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++...+. ..+|+
T Consensus 257 ~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~ 336 (500)
T TIGR02633 257 ILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRA 336 (500)
T ss_pred eEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhC
Confidence 58999999998432123589999999999999999999999999999999999995 89999999999865443 45678
Q ss_pred heeEEccCC---Ccccc-cHHHHHhcCCCC-C------CHHHHHHHHHHHhHHHHHhcCccchhh-hhcCCCCCCChHHH
Q 001438 459 QIGLVNQEP---ALFAT-TIRENILYGKDD-A------TMEEITRAAKLSEAMSFISNLPERFET-QVGERGIQLSGGQK 526 (1077)
Q Consensus 459 ~i~~v~Q~~---~lf~~-ti~~ni~~~~~~-~------~~~~~~~~~~~~~~~~~i~~l~~g~~t-~~~~~g~~LSgGqk 526 (1077)
+++|++|++ .+++. |++||+.++... . ..++.. .+. .+.++.+ |+.. ........||||||
T Consensus 337 ~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~--~~~---~~~l~~~--~l~~~~~~~~~~~LSgGqk 409 (500)
T TIGR02633 337 GIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAEL--QII---GSAIQRL--KVKTASPFLPIGRLSGGNQ 409 (500)
T ss_pred CCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHH--HHH---HHHHHhc--CccCCCccCccccCCHHHH
Confidence 899999996 46664 999999875311 0 111111 111 1223332 2221 23455678999999
Q ss_pred HHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhH
Q 001438 527 QRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEE 604 (1077)
Q Consensus 527 qri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~ 604 (1077)
||++||||++.+|++|||||||++||+.+.+.+.+.|+++. +|.|+|++||+++.+.. ||++++|++|+++..++.++
T Consensus 410 qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~~~~~~ 489 (500)
T TIGR02633 410 QKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKLKGDFVNHA 489 (500)
T ss_pred HHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEcccc
Confidence 99999999999999999999999999999999999998864 58999999999999865 99999999999998775443
No 354
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-35 Score=355.51 Aligned_cols=212 Identities=18% Similarity=0.323 Sum_probs=171.9
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCH-HHHhhh
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDL-KWLRQQ 459 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~-~~~r~~ 459 (1077)
.++++|+++.|. .+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+. ..+|++
T Consensus 265 ~l~~~~l~~~~~-----~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 339 (510)
T PRK09700 265 VFEVRNVTSRDR-----KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKG 339 (510)
T ss_pred EEEEeCccccCC-----CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCC
Confidence 599999998762 27999999999999999999999999999999999999999999999999866543 456778
Q ss_pred eeEEccCC---Ccccc-cHHHHHhcCCCC----C-------CHHHHHHHHHHHhHHHHHhcCccchh-hhhcCCCCCCCh
Q 001438 460 IGLVNQEP---ALFAT-TIRENILYGKDD----A-------TMEEITRAAKLSEAMSFISNLPERFE-TQVGERGIQLSG 523 (1077)
Q Consensus 460 i~~v~Q~~---~lf~~-ti~~ni~~~~~~----~-------~~~~~~~~~~~~~~~~~i~~l~~g~~-t~~~~~g~~LSg 523 (1077)
++|+||++ .+|+. |++||+.++... . ...+.. .+. .+.++.+ |+. ........+|||
T Consensus 340 i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~---~~~l~~~--~l~~~~~~~~~~~LSg 412 (510)
T PRK09700 340 MAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQ--RTA---ENQRELL--ALKCHSVNQNITELSG 412 (510)
T ss_pred cEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHH--HHH---HHHHHhc--CCCCCCccCccccCCh
Confidence 99999984 57765 999999876321 0 111111 111 1223222 232 224556678999
Q ss_pred HHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHhh-cCEEEEEECCEEEEecC
Q 001438 524 GQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGS 601 (1077)
Q Consensus 524 Gqkqri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~ 601 (1077)
|||||++||||++.+|+||||||||++||+.+.+.+.+.|+++. +|+|+|+|||+++.+.. ||++++|++|++++.++
T Consensus 413 Gq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~~ 492 (510)
T PRK09700 413 GNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRLTQILT 492 (510)
T ss_pred HHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEec
Confidence 99999999999999999999999999999999999999998864 58999999999998765 99999999999998886
Q ss_pred hhH
Q 001438 602 HEE 604 (1077)
Q Consensus 602 ~~~ 604 (1077)
..+
T Consensus 493 ~~~ 495 (510)
T PRK09700 493 NRD 495 (510)
T ss_pred Ccc
Confidence 533
No 355
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=100.00 E-value=1.6e-35 Score=333.25 Aligned_cols=190 Identities=37% Similarity=0.579 Sum_probs=156.0
Q ss_pred EEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhheeEEccCCCcccc-cHHHHHhcCCC--CCCHHHHH
Q 001438 415 LVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFAT-TIRENILYGKD--DATMEEIT 491 (1077)
Q Consensus 415 ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~-ti~~ni~~~~~--~~~~~~~~ 491 (1077)
|+||||||||||+++|+|+++|++|+|.++|+++.+.+. .+++++|++|++.+|+. |++||+.++.. ..+.++..
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~--~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~ 78 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPP--HLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIK 78 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCH--HHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHH
Confidence 689999999999999999999999999999999976654 35689999999999976 99999998642 11222211
Q ss_pred HHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CC
Q 001438 492 RAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM--VG 569 (1077)
Q Consensus 492 ~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~--~~ 569 (1077)
+ +.... ++.+ |++........+||||||||++|||||+.+|+++||||||++||+.+++.+.+.|+++. .+
T Consensus 79 ~--~~~~~---l~~~--~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g 151 (325)
T TIGR01187 79 P--RVLEA---LRLV--QLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLG 151 (325)
T ss_pred H--HHHHH---HHHc--CCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcC
Confidence 1 11112 2211 33344556677999999999999999999999999999999999999999999998874 37
Q ss_pred CeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHhcCCCchH
Q 001438 570 RTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISNPNSAY 613 (1077)
Q Consensus 570 ~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~~~ 613 (1077)
+|+|+|||+++.+.. ||+|++|++|++++.|+++++..++...|
T Consensus 152 ~tiiivTHd~~e~~~~~d~i~vl~~G~i~~~g~~~~~~~~~~~~~ 196 (325)
T TIGR01187 152 ITFVFVTHDQEEAMTMSDRIAIMRKGKIAQIGTPEEIYEEPANLF 196 (325)
T ss_pred CEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCcHH
Confidence 999999999998765 99999999999999999999987655444
No 356
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=5e-36 Score=300.78 Aligned_cols=213 Identities=24% Similarity=0.456 Sum_probs=180.5
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhe
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 460 (1077)
.+++++|+++|++ +.+++|+||++++|++.+++||||+||||.+++|+|+++|++|+|.++|.+++. ..+.+|
T Consensus 2 ~L~ie~vtK~Fg~---k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~----~~~~rI 74 (300)
T COG4152 2 ALEIEGVTKSFGD---KKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQ----EIKNRI 74 (300)
T ss_pred ceEEecchhccCc---eeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhh----hhhhhc
Confidence 4789999999973 468999999999999999999999999999999999999999999999998864 356689
Q ss_pred eEEccCCCcccc-cHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhcc
Q 001438 461 GLVNQEPALFAT-TIRENILYGKDD--ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVK 537 (1077)
Q Consensus 461 ~~v~Q~~~lf~~-ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~ 537 (1077)
||.|.+--|++. ||.|-+.|-... ...+++. .+ +..|++++.- --.-..+..+||-|.+|+|-+--|+++
T Consensus 75 GyLPEERGLy~k~tv~dql~yla~LkGm~~~e~~--~~---~~~wLer~~i--~~~~~~kIk~LSKGnqQKIQfisaviH 147 (300)
T COG4152 75 GYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQ--KK---LQAWLERLEI--VGKKTKKIKELSKGNQQKIQFISAVIH 147 (300)
T ss_pred ccChhhhccCccCcHHHHHHHHHHhcCCcHHHHH--HH---HHHHHHhccc--cccccchHHHhhhhhhHHHHHHHHHhc
Confidence 999999999976 999999875422 2222222 22 2233443321 112345667899999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHhc
Q 001438 538 NPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELIS 607 (1077)
Q Consensus 538 ~p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 607 (1077)
+|+++|||||+|+|||.+.+.+.+.+.+++ +|.|+|+.||+++.++. ||++++|++|+.|-+|+.+++.+
T Consensus 148 ePeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~llmL~kG~~V~~G~v~~ir~ 219 (300)
T COG4152 148 EPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVEDIRR 219 (300)
T ss_pred CCCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhheecCCceEEeccHHHHHH
Confidence 999999999999999999999999998875 69999999999999987 99999999999999999999875
No 357
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.4e-32 Score=307.79 Aligned_cols=370 Identities=18% Similarity=0.197 Sum_probs=312.2
Q ss_pred HHHHHHHhhHHhHHHHHHHHHHHhhccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 702 TICAIIAGAQMPLFALGVSQALVAYYMDWDTTQREVKKITILFCCAAVITVIVHAIEHLSFGIMGERLTLRVREKMFSAI 781 (1077)
Q Consensus 702 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~Lr~~l~~~l 781 (1077)
.++.++.++......+++...+..++.... ......+...++++.++..+....+.-.....+.++...||.++++++
T Consensus 6 ~ll~~l~~i~~i~qa~llA~~l~~l~~~~~--~~~l~~~~~~l~~~~~lRa~l~~~~~~~~~~aa~~~~~~LR~~~l~~l 83 (559)
T COG4988 6 ALLAVLSGIAIIAQAALLADILTKLIEGQL--FQSLLPLLILLLIALVLRAFLAWLRERLGYRAAAKVRASLRQLVLDKL 83 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555556667777777766654221 122334455556666677788888888888899999999999999999
Q ss_pred HcCCccccccccCCchhHHHHHhhcHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 001438 782 LSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQNFGLVTASFVIAFILNWRITLVVVATYPLIISGHISEK 861 (1077)
Q Consensus 782 lr~p~~FFD~~~~~~G~IlnR~s~D~~~i~~~l~~~l~~~~~~~~~~~~~i~i~~~~~w~l~l~~l~~~Pl~i~~~~~~~ 861 (1077)
.+.+..|-++ .|+|.+...++.-++.++..+...++.++.+.+..+..++.+++.+|.-+++++.+.|++.+++.+.+
T Consensus 84 ~~~gp~~~~~--~~~g~~atl~~egve~l~~Y~~ryLPq~~~~~ivp~~i~i~v~~~~w~aalIllit~PlIPlfMilvg 161 (559)
T COG4988 84 AKLGPAFIAQ--KPAGSAATLALEGIEQLEPYYARYLPQMFLSAIVPLLILIAIFFFNWAAALILLITAPLIPLFMILVG 161 (559)
T ss_pred HhCChhhhcC--CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999995 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhHHHHHHHHhHHHHHHHcchHHHHHhcchHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 862 LFFQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRSFIRGQIAGIFYGISQFFIFSSYGLA 941 (1077)
Q Consensus 862 ~~~~~~~~~~~~~~~~~~~~~~Etl~Gi~tIrAf~~e~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 941 (1077)
+.-+...++.-..+.+.++++-+.+.|+.|+|+|+..+...++..+..++..+..+..-+..=.-..+.+++.+.+.+++
T Consensus 162 ~~a~~~s~~~~~~~~~ls~~FLD~LrGL~TLr~f~~~~~~~~~i~~~se~fR~~TM~vLriAflSs~vLeffa~lsiAlv 241 (559)
T COG4988 162 LAAKDASEKQFSALARLSGHFLDRLRGLETLRAFGRTEATEERIRKDSEDFRKATMSVLRIAFLSSAVLEFFAYLSIALV 241 (559)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99888888888899999999999999999999999999999999999999998888766666666677888888999888
Q ss_pred HHHHHHHhhc-CCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHcCCCCccCCCCc--ccccccccE
Q 001438 942 LWYGSVLMGK-ELASFKSVMKSFMVLIVTALAMGETLALVPDLLKGNQMAASVFEVLDRKTQVIGDIGE--ELTNVEGTI 1018 (1077)
Q Consensus 942 ~~~g~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~--~~~~~~G~I 1018 (1077)
..|.+..... |.++....+.++...--...|+..+.+.+.+-+.+..+++.++.+++.+.+....... ..+..+.+|
T Consensus 242 Av~~g~~ll~~G~ltl~~~l~~LiLAPEff~PlR~lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~~~~~~~~~~~~~ei 321 (559)
T COG4988 242 AVYIGFRLLGEGDLTLFAGLFVLILAPEFFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPGSGEKAEVANEPPIEI 321 (559)
T ss_pred HHHHHHHHHccCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCCCccccccccCCCcee
Confidence 7777766666 7888877777777777788999999999999999999999999999987765443321 222234577
Q ss_pred EEeeeeeeCCCCCcccccccceeeeeCCCEEEEECCCCCCHHHHHHHHhhccCCCCCCC
Q 001438 1019 ELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKA 1077 (1077)
Q Consensus 1019 ~f~nVsf~Y~~~~~~~VLk~vsl~I~~GekVaIVGrTGsGKSTLi~lL~Rfyd~~~G~i 1077 (1077)
+++|++|+||+.+ ++++|+||+++|||++||||+||||||||+++|.+|..|++|+|
T Consensus 322 ~~~~l~~~y~~g~--~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I 378 (559)
T COG4988 322 SLENLSFRYPDGK--PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEI 378 (559)
T ss_pred eecceEEecCCCC--cccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceE
Confidence 7789999999764 57999999999999999999999999999999999999999986
No 358
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.8e-35 Score=309.77 Aligned_cols=189 Identities=21% Similarity=0.375 Sum_probs=155.0
Q ss_pred EEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhee
Q 001438 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (1077)
Q Consensus 382 i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 461 (1077)
++++|++++|++ ..++ ++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.. ++.++
T Consensus 2 l~~~~l~~~~~~---~~l~-~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~----~~~~~ 73 (195)
T PRK13541 2 LSLHQLQFNIEQ---KNLF-DLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIA----KPYCT 73 (195)
T ss_pred eEEEEeeEEECC---cEEE-EEEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhh----hhhEE
Confidence 689999999963 2355 599999999999999999999999999999999999999999999886532 34699
Q ss_pred EEccCCCc-ccccHHHHHhcCCCCC-CHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccCC
Q 001438 462 LVNQEPAL-FATTIRENILYGKDDA-TMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNP 539 (1077)
Q Consensus 462 ~v~Q~~~l-f~~ti~~ni~~~~~~~-~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~p 539 (1077)
|++|++.+ ++.|++||+.+..... ..+++.++++.. |++......+.+||||||||++||||++++|
T Consensus 74 ~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LS~G~~~rl~la~al~~~p 142 (195)
T PRK13541 74 YIGHNLGLKLEMTVFENLKFWSEIYNSAETLYAAIHYF-----------KLHDLLDEKCYSLSSGMQKIVAIARLIACQS 142 (195)
T ss_pred eccCCcCCCccCCHHHHHHHHHHhcccHHHHHHHHHHc-----------CCHhhhccChhhCCHHHHHHHHHHHHHhcCC
Confidence 99999865 5679999998754221 122222222222 2333345667899999999999999999999
Q ss_pred CEEEEeCcCCCCCHHHHHHHHHHHHHH-hCCCeEEEEccCchhHhhcCEEE
Q 001438 540 SILLLDEATSALDAESENSVQEALDRV-MVGRTTVVVAHRLSTIRNADVIA 589 (1077)
Q Consensus 540 ~illlDEpts~lD~~~~~~i~~~l~~~-~~~~t~i~vtH~~~~~~~~d~i~ 589 (1077)
+++||||||++||+.+.+.+.+.|+.. .+++|+|++||+++.++.||-+.
T Consensus 143 ~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~ 193 (195)
T PRK13541 143 DLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLESSIKSAQILQ 193 (195)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCccccchhheec
Confidence 999999999999999999999999754 46899999999999999999763
No 359
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.6e-35 Score=291.90 Aligned_cols=206 Identities=27% Similarity=0.401 Sum_probs=175.3
Q ss_pred CcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhheeEEccCCC--cccc-
Q 001438 396 DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPA--LFAT- 472 (1077)
Q Consensus 396 ~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~--lf~~- 472 (1077)
++++|+++|++|++|+++.|+|.||||||||++.|.|-..|++|+|.|||+|++.++.......++-|+|||- .++.
T Consensus 18 ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~~l 97 (263)
T COG1101 18 EKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPEL 97 (263)
T ss_pred HHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHHHHHhcchhhCCcccc
Confidence 4579999999999999999999999999999999999999999999999999999999888888999999996 4544
Q ss_pred cHHHHHhcCCCC---CCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCcCC
Q 001438 473 TIRENILYGKDD---ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATS 549 (1077)
Q Consensus 473 ti~~ni~~~~~~---~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~p~illlDEpts 549 (1077)
||.||+.+.... .........-......+.+..++.|++-.++.+..-|||||||-++|+.|.++.|+||+|||-|+
T Consensus 98 TieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~~pkiLLLDEHTA 177 (263)
T COG1101 98 TIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTA 177 (263)
T ss_pred cHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcCCCcEEEecchhh
Confidence 999999875311 11111122223333445577889999999998888999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHH--hCCCeEEEEccCchhH-hhcCEEEEEECCEEEEecC
Q 001438 550 ALDAESENSVQEALDRV--MVGRTTVVVAHRLSTI-RNADVIAVVQGRKIVKTGS 601 (1077)
Q Consensus 550 ~lD~~~~~~i~~~l~~~--~~~~t~i~vtH~~~~~-~~~d~i~~l~~G~i~~~g~ 601 (1077)
||||.+...+++.-.+. ..+-|++||||+++.. .+.+|.++|++|+|+.+-+
T Consensus 178 ALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~Al~yG~RlImLh~G~IvlDv~ 232 (263)
T COG1101 178 ALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKIVLDVT 232 (263)
T ss_pred cCCcchHHHHHHHHHHHHHhcCCceEEEeccHHHHHhhCCeEEEEeCCeEEEEcc
Confidence 99999999998877665 2467999999999975 6699999999999997643
No 360
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=100.00 E-value=1.5e-32 Score=306.17 Aligned_cols=420 Identities=17% Similarity=0.173 Sum_probs=266.6
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 163 SAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFARVWQISLVTLSI-VPLIALAGGMYAYVTIGLIARVRKSYVKAG 241 (1077)
Q Consensus 163 ~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~-~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (1077)
.|++.|++++-..+.+....++...+.++.-...++....+++.+.+.. +.+-.++...+.+.+.+...+.++..++..
T Consensus 186 QrltqDv~kf~~~l~sl~s~l~~a~~di~~Y~~~l~~s~g~~gp~~i~~Yf~~~~vi~~~L~~pI~~l~~~qeklEGdfR 265 (659)
T KOG0060|consen 186 QRLTQDVEKFCRQLSSLYSNLLKAPFDLVYYTFRLFESAGWLGPVSIFAYFLIGTVINKTLRGPIVKLTVEQEKLEGDFR 265 (659)
T ss_pred HHHhHHHHHHHHHHHHHHHhhhccceeeehhhhHHhhhcCcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHhhcchh
Confidence 4899999999887765444444433322221111111111112222211 111222223333333344444444444444
Q ss_pred HHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhcccC
Q 001438 242 EIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGRKAGLAKGLGLGSMHCVLFLSWSLLVWYVSVVV----HKHISN 317 (1077)
Q Consensus 242 ~~~~E~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v----~~~~~~ 317 (1077)
-.-.+...|-..|..|+.++.+....+...++..+...+.-.++-....+..+.-++..++.....+.-+ ..+.++
T Consensus 266 y~h~rlr~NaE~iAFY~g~~~E~~~~~~~f~~Lv~~l~~l~~~r~~l~f~~n~~~Ylg~ilsy~vi~~p~Fs~h~y~~~s 345 (659)
T KOG0060|consen 266 YKHSRLRVNAEEIAFYRGGQVEHQRTDQRFRNLVQHLRELMSFRFWLGFIDNIFDYLGGILSYVVIAIPFFSGHVYDDLS 345 (659)
T ss_pred hheeeeeecchhhhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeeEEeeeeecccccCCcC
Confidence 4555777889999999999988877766666655544443322222111112221222111111000000 123455
Q ss_pred HHHHHHHHH----HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhccCcc-------------cc-cc-----cccC-C
Q 001438 318 GGESFTTML----NVVIAGLSLGQAAPDITAFIRAKAAAYPIFEMIERDTM-------------SK-AS-----SKTG-R 373 (1077)
Q Consensus 318 ~g~~~~~~~----~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~-------------~~-~~-----~~~~-~ 373 (1077)
+..++..+. .++-+...++.+......+.+-..-..||-++.+.-.. +. +. ...+ .
T Consensus 346 ~aEL~~~i~~na~~~i~Li~~f~~l~~~~~~ls~lsGyt~Ri~el~~~l~d~~~~~~~~~~~~~~~~E~~~~l~~~~G~~ 425 (659)
T KOG0060|consen 346 PAELSGLISNNAFVFIYLISAFGRLVDLSRDLSRLSGYTHRIGELMEVLDDLSSGSQECTMEEEELGEAEWGLSLPPGSG 425 (659)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHhccCCcchhhhhhhhhhhhhccCCCCCCc
Confidence 555554332 11222233344333334444444556777666532100 00 00 0000 1
Q ss_pred CCCCCcccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCH
Q 001438 374 KLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDL 453 (1077)
Q Consensus 374 ~~~~~~~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~ 453 (1077)
+..+.+..|++++|++.-|++ +..+.+|+||+|+.|+.+.|+||||||||+|++.|.|+.+..+|++.--.+.-.
T Consensus 426 ~~~~~Dn~i~~e~v~l~tPt~-g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~---- 500 (659)
T KOG0060|consen 426 KAEPADNAIEFEEVSLSTPTN-GDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGP---- 500 (659)
T ss_pred ccccccceEEeeeeeecCCCC-CceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCCC----
Confidence 123344679999999998875 445678899999999999999999999999999999999999999976443211
Q ss_pred HHHhhheeEEccCCCcccccHHHHHhcCC-------CCCCHHHHHHHHHHHhHHHHHhcCccchhhhh-cCCCCCCChHH
Q 001438 454 KWLRQQIGLVNQEPALFATTIRENILYGK-------DDATMEEITRAAKLSEAMSFISNLPERFETQV-GERGIQLSGGQ 525 (1077)
Q Consensus 454 ~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~-------~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~-~~~g~~LSgGq 525 (1077)
+.+-|+||.|+.-.||+||-+.|+. ...+++++.+.++.+++.+.++. .+|+|+.+ -+-...||+||
T Consensus 501 ----~~lfflPQrPYmt~GTLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r-~ggld~~~~~dW~dvLS~GE 575 (659)
T KOG0060|consen 501 ----KDLFFLPQRPYMTLGTLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLER-EGGLDQQVDWDWMDVLSPGE 575 (659)
T ss_pred ----CceEEecCCCCccccchhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHH-hCCCCchhhccHHhhcCHHH
Confidence 2489999999999999999999973 23567788888888777665543 45777554 35677899999
Q ss_pred HHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhhcCEEEEEECC
Q 001438 526 KQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGR 594 (1077)
Q Consensus 526 kqri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~~d~i~~l~~G 594 (1077)
+||+|.||-+|.+|++-+|||+|||+|.+.|..+.+.+++. |.|.|-|.||-+.-+.=|.++-|+.+
T Consensus 576 qQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~--giT~iSVgHRkSL~kfHd~~L~~~g~ 642 (659)
T KOG0060|consen 576 QQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCREM--GITFISVGHRKSLWKFHDYVLRMDGR 642 (659)
T ss_pred HHHHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHHc--CCeEEEeccHHHHHhhhhEEEEecCC
Confidence 99999999999999999999999999999999999888764 89999999999999999999999874
No 361
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=2.8e-35 Score=352.97 Aligned_cols=210 Identities=19% Similarity=0.343 Sum_probs=171.6
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCH-HHHhhh
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDL-KWLRQQ 459 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~-~~~r~~ 459 (1077)
.++++|+++ .+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+. +.+|++
T Consensus 257 ~l~~~~l~~--------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~ 328 (501)
T PRK10762 257 RLKVDNLSG--------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANG 328 (501)
T ss_pred EEEEeCccc--------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCC
Confidence 589999984 26999999999999999999999999999999999999999999999999977654 345678
Q ss_pred eeEEccCC---Cccc-ccHHHHHhcCCCC--------CCHHHHHHHHHHHhHHHHHhcCccchh-hhhcCCCCCCChHHH
Q 001438 460 IGLVNQEP---ALFA-TTIRENILYGKDD--------ATMEEITRAAKLSEAMSFISNLPERFE-TQVGERGIQLSGGQK 526 (1077)
Q Consensus 460 i~~v~Q~~---~lf~-~ti~~ni~~~~~~--------~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~~~~~g~~LSgGqk 526 (1077)
+||+||+| .++. .|++||+.++... ...++.. .+ ..+.++.+ |+. ........+||||||
T Consensus 329 i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~--~~---~~~~l~~~--~l~~~~~~~~~~~LSgGek 401 (501)
T PRK10762 329 IVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQ--QA---VSDFIRLF--NIKTPSMEQAIGLLSGGNQ 401 (501)
T ss_pred CEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHH--HH---HHHHHHhc--CCCCCCccCchhhCCHHHH
Confidence 99999997 4665 5999999875310 0111111 11 11223322 221 234566778999999
Q ss_pred HHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhH
Q 001438 527 QRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEE 604 (1077)
Q Consensus 527 qri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~ 604 (1077)
||++||||++.+|++|||||||++||+.+.+.+.+.|+++. +|+|+|++||+++.+.. ||+|++|++|+++..|+.++
T Consensus 402 qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~~~~~~ 481 (501)
T PRK10762 402 QKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGRISGEFTREQ 481 (501)
T ss_pred HHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEecccc
Confidence 99999999999999999999999999999999999998874 58999999999999865 99999999999999998776
Q ss_pred H
Q 001438 605 L 605 (1077)
Q Consensus 605 l 605 (1077)
+
T Consensus 482 ~ 482 (501)
T PRK10762 482 A 482 (501)
T ss_pred C
Confidence 4
No 362
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-34 Score=348.04 Aligned_cols=212 Identities=21% Similarity=0.337 Sum_probs=171.7
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCH-HHHhhh
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDL-KWLRQQ 459 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~-~~~r~~ 459 (1077)
.++++|+++. .+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+. ...|+.
T Consensus 257 ~l~~~~~~~~-------~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 329 (501)
T PRK11288 257 RLRLDGLKGP-------GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAG 329 (501)
T ss_pred EEEEeccccC-------CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCC
Confidence 5889999742 37999999999999999999999999999999999999999999999999875443 345678
Q ss_pred eeEEccCCC---ccc-ccHHHHHhcCCCCC--------CHHHHHHHHHHHhHHHHHhcCccchh-hhhcCCCCCCChHHH
Q 001438 460 IGLVNQEPA---LFA-TTIRENILYGKDDA--------TMEEITRAAKLSEAMSFISNLPERFE-TQVGERGIQLSGGQK 526 (1077)
Q Consensus 460 i~~v~Q~~~---lf~-~ti~~ni~~~~~~~--------~~~~~~~~~~~~~~~~~i~~l~~g~~-t~~~~~g~~LSgGqk 526 (1077)
++|+||++. +|+ .|+.||+.++.... ...+..+ + ..+.++.+ |++ ........+||||||
T Consensus 330 i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~--~---~~~~l~~~--~l~~~~~~~~~~~LSgGq~ 402 (501)
T PRK11288 330 IMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAE--N---ADRFIRSL--NIKTPSREQLIMNLSGGNQ 402 (501)
T ss_pred CEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHH--H---HHHHHHhc--CcccCCccCccccCCHHHH
Confidence 999999973 665 59999998753210 1111111 1 11223332 221 224455678999999
Q ss_pred HHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhH
Q 001438 527 QRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEE 604 (1077)
Q Consensus 527 qri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~ 604 (1077)
||++||||++.+|++|||||||++||+.+.+.+.+.|+++. .|.|+|+|||+++.+.. ||++++|++|++++.|+++|
T Consensus 403 qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~i~~l~~g~i~~~~~~~~ 482 (501)
T PRK11288 403 QKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGRIAGELAREQ 482 (501)
T ss_pred HHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCEEEEEECCEEEEEEcccc
Confidence 99999999999999999999999999999999999998874 58999999999999865 99999999999999998876
Q ss_pred Hh
Q 001438 605 LI 606 (1077)
Q Consensus 605 l~ 606 (1077)
..
T Consensus 483 ~~ 484 (501)
T PRK11288 483 AT 484 (501)
T ss_pred CC
Confidence 53
No 363
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=100.00 E-value=1.2e-34 Score=286.84 Aligned_cols=143 Identities=36% Similarity=0.569 Sum_probs=133.9
Q ss_pred EEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhee
Q 001438 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (1077)
Q Consensus 382 i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 461 (1077)
++++|++++|++. ++++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|+ +.++
T Consensus 1 l~~~~l~~~~~~~---~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~-----------~~i~ 66 (144)
T cd03221 1 IELENLSKTYGGK---LLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST-----------VKIG 66 (144)
T ss_pred CEEEEEEEEECCc---eEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe-----------EEEE
Confidence 4789999999642 5899999999999999999999999999999999999999999999994 3699
Q ss_pred EEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccCCCE
Q 001438 462 LVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSI 541 (1077)
Q Consensus 462 ~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~p~i 541 (1077)
|++| ||+||+||++||||++++|++
T Consensus 67 ~~~~-------------------------------------------------------lS~G~~~rv~laral~~~p~i 91 (144)
T cd03221 67 YFEQ-------------------------------------------------------LSGGEKMRLALAKLLLENPNL 91 (144)
T ss_pred EEcc-------------------------------------------------------CCHHHHHHHHHHHHHhcCCCE
Confidence 9998 999999999999999999999
Q ss_pred EEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhh-cCEEEEEECCE
Q 001438 542 LLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRK 595 (1077)
Q Consensus 542 lllDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~-~d~i~~l~~G~ 595 (1077)
+||||||++||+.+...+.+.++++ ++|+|++||+++.+.. ||++++|++|+
T Consensus 92 lllDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 92 LLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLDQVATKIIELEDGK 144 (144)
T ss_pred EEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHhCCEEEEEeCCC
Confidence 9999999999999999999999876 5799999999999865 99999999985
No 364
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=8.2e-35 Score=380.76 Aligned_cols=217 Identities=23% Similarity=0.401 Sum_probs=180.1
Q ss_pred cEEEEeEEEEcCCC-CCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccC---CCccEEEECCeeCCCCCHHHH
Q 001438 381 HIEFKDVSFCYPSR-PDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYE---PLSGEILLDGNNIKGLDLKWL 456 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~-~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~---~~~G~i~~~g~~~~~~~~~~~ 456 (1077)
.++++|++++|+.+ .++.+|+|+|+++++||++||+||||||||||+++|+|..+ |++|+|.+||+++. ..+
T Consensus 759 ~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~----~~~ 834 (1394)
T TIGR00956 759 IFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLD----SSF 834 (1394)
T ss_pred eEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC----hhh
Confidence 47999999999632 23569999999999999999999999999999999999997 78899999999885 247
Q ss_pred hhheeEEccCCCcc-cccHHHHHhcCC----C-CCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHH
Q 001438 457 RQQIGLVNQEPALF-ATTIRENILYGK----D-DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIA 530 (1077)
Q Consensus 457 r~~i~~v~Q~~~lf-~~ti~~ni~~~~----~-~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~ 530 (1077)
|+++|||+|++.++ ..||+||+.++. + ..+.++..+ +..+..+.+ ++.+..|+.+|+.+.+||||||||++
T Consensus 835 ~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~--~v~~~l~~l-~L~~~~d~~v~~~~~~LSgGqrqRl~ 911 (1394)
T TIGR00956 835 QRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKME--YVEEVIKLL-EMESYADAVVGVPGEGLNVEQRKRLT 911 (1394)
T ss_pred hcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHH--HHHHHHHHc-CChhhCCCeeCCCCCCCCHHHhhHHH
Confidence 88899999997655 569999998753 1 122222211 112222222 35566788999888899999999999
Q ss_pred HHHHhccCCC-EEEEeCcCCCCCHHHHHHHHHHHHHH-hCCCeEEEEccCchhH--hhcCEEEEEECC-EEEEecChhH
Q 001438 531 ISRAIVKNPS-ILLLDEATSALDAESENSVQEALDRV-MVGRTTVVVAHRLSTI--RNADVIAVVQGR-KIVKTGSHEE 604 (1077)
Q Consensus 531 lARal~~~p~-illlDEpts~lD~~~~~~i~~~l~~~-~~~~t~i~vtH~~~~~--~~~d~i~~l~~G-~i~~~g~~~~ 604 (1077)
|||||+.+|+ ||+||||||+||+.++..+.+.|+++ .+|+|+|+++|+++.. +.+|++++|++| ++++.|+..+
T Consensus 912 Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~~ 990 (1394)
T TIGR00956 912 IGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGE 990 (1394)
T ss_pred HHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCccc
Confidence 9999999997 99999999999999999999999987 4689999999999963 569999999997 9999998754
No 365
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=1.6e-34 Score=346.60 Aligned_cols=211 Identities=18% Similarity=0.330 Sum_probs=171.1
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHH-Hhhh
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKW-LRQQ 459 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~-~r~~ 459 (1077)
.++++|+++ .+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .|++
T Consensus 268 ~l~~~~l~~--------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 339 (510)
T PRK15439 268 VLTVEDLTG--------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARG 339 (510)
T ss_pred eEEEeCCCC--------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 589999983 1589999999999999999999999999999999999999999999999998766554 4567
Q ss_pred eeEEccCC---Ccccc-cHHHHHhcCC----CC-CCHHHHHHHHHHHhHHHHHhcCccchh-hhhcCCCCCCChHHHHHH
Q 001438 460 IGLVNQEP---ALFAT-TIRENILYGK----DD-ATMEEITRAAKLSEAMSFISNLPERFE-TQVGERGIQLSGGQKQRI 529 (1077)
Q Consensus 460 i~~v~Q~~---~lf~~-ti~~ni~~~~----~~-~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~~~~~g~~LSgGqkqri 529 (1077)
|+|+||++ .+|+. |+.||+.... .. ....+..+ + ..+.++.+ |+. .........||||||||+
T Consensus 340 i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~--~---~~~~l~~~--~l~~~~~~~~~~~LSgG~kqrl 412 (510)
T PRK15439 340 LVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENA--V---LERYRRAL--NIKFNHAEQAARTLSGGNQQKV 412 (510)
T ss_pred cEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHH--H---HHHHHHHc--CCCCCCccCccccCCcHHHHHH
Confidence 99999986 36665 9999985321 11 01111111 1 11223322 232 234556678999999999
Q ss_pred HHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHh
Q 001438 530 AISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELI 606 (1077)
Q Consensus 530 ~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~ 606 (1077)
+||||++.+|++|||||||++||+.+.+.+.+.|+++. +|+|+|+|||+++.+.. ||++++|++|+++..|+.+++.
T Consensus 413 ~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l~~G~i~~~~~~~~~~ 491 (510)
T PRK15439 413 LIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEISGALTGAAIN 491 (510)
T ss_pred HHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEccccCC
Confidence 99999999999999999999999999999999998874 58999999999999875 9999999999999999887764
No 366
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=100.00 E-value=2.1e-34 Score=304.99 Aligned_cols=186 Identities=17% Similarity=0.233 Sum_probs=151.3
Q ss_pred cccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEE-ECCeeCCCCCHHHHhhheeEEccCCCcccc-cHHH
Q 001438 399 IFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEIL-LDGNNIKGLDLKWLRQQIGLVNQEPALFAT-TIRE 476 (1077)
Q Consensus 399 ~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~-~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~-ti~~ 476 (1077)
+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|. ++|..+ .+.|++.+|+. |++|
T Consensus 2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~-------------~~~~~~~l~~~ltv~e 68 (213)
T PRK15177 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDAL-------------PLGANSFILPGLTGEE 68 (213)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCcee-------------ccccccccCCcCcHHH
Confidence 68999999999999999999999999999999999999999997 777532 13456778876 9999
Q ss_pred HHhcCCC--CCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHH
Q 001438 477 NILYGKD--DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAE 554 (1077)
Q Consensus 477 ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~p~illlDEpts~lD~~ 554 (1077)
|+.+... ....++..+.+ .+ ...+++..++. ...||||||||++||||++.+|+++||||||+++|+.
T Consensus 69 nl~~~~~~~~~~~~~~~~~~-----~~-~~~l~~~~~~~----~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~ 138 (213)
T PRK15177 69 NARMMASLYGLDGDEFSHFC-----YQ-LTQLEQCYTDR----VSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNA 138 (213)
T ss_pred HHHHHHHHcCCCHHHHHHHH-----HH-HhChhHHhhch----HhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHH
Confidence 9986432 22223322211 11 22344444444 4579999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCeEEEEccCchhHh-hcCEEEEEECCEEEEecChhHHhc
Q 001438 555 SENSVQEALDRVMVGRTTVVVAHRLSTIR-NADVIAVVQGRKIVKTGSHEELIS 607 (1077)
Q Consensus 555 ~~~~i~~~l~~~~~~~t~i~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~ 607 (1077)
+++.+.+.+.+..+++|+|++||+++.+. .||++++|++|++++.|+.++..+
T Consensus 139 ~~~~~~~~l~~~~~~~~ii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 192 (213)
T PRK15177 139 TQLRMQAALACQLQQKGLIVLTHNPRLIKEHCHAFGVLLHGKITMCEDLAQATA 192 (213)
T ss_pred HHHHHHHHHHHHhhCCcEEEEECCHHHHHHhcCeeEEEECCeEEEeCCHHHHHH
Confidence 99999998866556789999999999986 599999999999999999888753
No 367
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=2.4e-34 Score=310.51 Aligned_cols=193 Identities=26% Similarity=0.400 Sum_probs=153.8
Q ss_pred EEcCCCCCcccccceeEEec-----CCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhheeEE
Q 001438 389 FCYPSRPDVAIFDKFCLDIP-----AGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLV 463 (1077)
Q Consensus 389 ~~y~~~~~~~~l~~isl~i~-----~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v 463 (1077)
|+|++. ...++|++|+++ +||+++|+||||||||||+++|+|+++|++|+|.++|. +|+|+
T Consensus 1 ~~y~~~--~~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~------------~i~~~ 66 (246)
T cd03237 1 YTYPTM--KKTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELD------------TVSYK 66 (246)
T ss_pred CCCccc--ccccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCc------------eEEEe
Confidence 567643 247888888886 69999999999999999999999999999999999984 59999
Q ss_pred ccCCCc-ccccHHHHHhcCCCCC-C-HHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccCCC
Q 001438 464 NQEPAL-FATTIRENILYGKDDA-T-MEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPS 540 (1077)
Q Consensus 464 ~Q~~~l-f~~ti~~ni~~~~~~~-~-~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~p~ 540 (1077)
||++.. ++.|++||+.+..... . .+...+. ++.+ |++........+||||||||++|||||+.+|+
T Consensus 67 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~---------l~~l--~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~ 135 (246)
T cd03237 67 PQYIKADYEGTVRDLLSSITKDFYTHPYFKTEI---------AKPL--QIEQILDREVPELSGGELQRVAIAACLSKDAD 135 (246)
T ss_pred cccccCCCCCCHHHHHHHHhhhccccHHHHHHH---------HHHc--CCHHHhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 999875 5789999997543211 1 1111111 2111 33444556677899999999999999999999
Q ss_pred EEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEccCchhHhh-cCEEEEEECCEEE--EecChhHHh
Q 001438 541 ILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIV--KTGSHEELI 606 (1077)
Q Consensus 541 illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~--~~g~~~~l~ 606 (1077)
++||||||++||+.+...+.+.|+++. .++|+|+|||+++.+.. ||+|++|+++..+ ..+++.++.
T Consensus 136 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~~~~~d~i~~l~~~~~~~~~~~~~~~~~ 206 (246)
T cd03237 136 IYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYLADRLIVFEGEPSVNGVANPPQSLR 206 (246)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCCCeeEEEeCCchHHH
Confidence 999999999999999999999999874 37999999999999875 9999999776443 445555543
No 368
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.5e-31 Score=293.93 Aligned_cols=326 Identities=20% Similarity=0.224 Sum_probs=241.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccccCCchhHHHHHhhcHHHHHHHHHhhHHHHHHHH
Q 001438 746 CAAVITVIVHAIEHLSFGIMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQNF 825 (1077)
Q Consensus 746 ~l~~~~~~~~~~~~~~~~~~~~~~~~~Lr~~l~~~llr~p~~FFD~~~~~~G~IlnR~s~D~~~i~~~l~~~l~~~~~~~ 825 (1077)
++++...+..+...+.......++..++|.++|+++.-.+..-.++ -++|+++||+..|+|.+|+..-..+...+..+
T Consensus 66 ~~aI~Rt~~RY~ERlvsH~AtfrvL~~lRv~~f~kl~p~sp~~~~r--~r~gdLL~RLvaDVd~Ld~lyLRvi~P~~~a~ 143 (573)
T COG4987 66 GLAILRTAARYVERLVSHDATFRVLSALRVRLFEKLEPLSPALLLR--YRSGDLLNRLVADVDALDNLYLRVIAPAVVAL 143 (573)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccCChHHHHh--cChHhHHHHHHhhHHHHhhHHHHHHhhHHHHH
Confidence 3455556666777777777788999999999999999998888885 78999999999999999999998888888888
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhhHHHHHHHHhHHHHHHHcchHHHHHhcchHHHHHH
Q 001438 826 GLVTASFVIAFILNWRITLVVVATYPLIISG-HISEKLFFQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKVLEL 904 (1077)
Q Consensus 826 ~~~~~~i~i~~~~~w~l~l~~l~~~Pl~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Etl~Gi~tIrAf~~e~~~~~~ 904 (1077)
+...+..+...+.+|.+++.+....-+.++. -.++.++-++..+..........+.+.|-++|..-.+.||+++++.+.
T Consensus 144 ~~~~~~~i~L~f~~~~~Alll~~~ll~~lli~P~~~~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~~ 223 (573)
T COG4987 144 VLIAVVTIGLSFFSIPLALLLGLILLLLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTA 223 (573)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHHH
Confidence 7777777777778887776655443333222 222233334444555555666667788999999999999999999999
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHH-hhhhh
Q 001438 905 YSRELVEPSKRSFIRGQIAGIFYGISQFFIFSSYG-LALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETL-ALVPD 982 (1077)
Q Consensus 905 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 982 (1077)
+.+..+...+.-.+.+...++.....+++...... ..+|.++ .+..|..+......+.+..+...-+...+. ..+.+
T Consensus 224 l~~~e~~~~~~q~k~~~~~~~~~a~~~l~~g~~v~~~l~w~a~-~~~~G~~~~~~aa~~ll~~f~~~eaf~~L~~~A~~~ 302 (573)
T COG4987 224 LEATEASWLKAQRKQARFTGLSDAILLLIAGLLVIGLLLWMAA-QVGAGALAQPGAALALLVIFAALEAFEPLAPGAFQH 302 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcCCCcchhHHHHHHHHHHHHHHHHhhhcchhHHH
Confidence 99988888888888888888877777766655555 4455544 334455443222222222121222222222 34467
Q ss_pred HHHHHHHHHHHHHHHcCCCCccCCCCcccccccc-cEEEeeeeeeCCCCCcccccccceeeeeCCCEEEEECCCCCCHHH
Q 001438 983 LLKGNQMAASVFEVLDRKTQVIGDIGEELTNVEG-TIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKST 1061 (1077)
Q Consensus 983 ~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~G-~I~f~nVsf~Y~~~~~~~VLk~vsl~I~~GekVaIVGrTGsGKST 1061 (1077)
..+...++.|+.++++.+++...+ .++.+ ..| .++++||+|+||+++ ++||+|+||++++||||||||||||||||
T Consensus 303 lgq~~~Sa~Rl~~i~~q~~e~~~~-~~~~~-~~~~~l~~~~vsF~y~~~~-~~~L~~~~l~l~~GEkvAIlG~SGsGKST 379 (573)
T COG4987 303 LGQVIASARRLNDILDQKPEVTFP-DEQTA-TTGQALELRNVSFTYPGQQ-TKALKNFNLTLAQGEKVAILGRSGSGKST 379 (573)
T ss_pred hhHHHHHHHHHhhhccCCcccCCC-ccccC-CccceeeeccceeecCCCc-cchhhccceeecCCCeEEEECCCCCCHHH
Confidence 788899999999999988877654 12221 222 899999999999764 46899999999999999999999999999
Q ss_pred HHHHHhhccCCCCCCC
Q 001438 1062 VLSLILRFYDPTAGKA 1077 (1077)
Q Consensus 1062 Li~lL~Rfyd~~~G~i 1077 (1077)
++++|.|-|||++|+|
T Consensus 380 llqLl~~~~~~~~G~i 395 (573)
T COG4987 380 LLQLLAGAWDPQQGSI 395 (573)
T ss_pred HHHHHHhccCCCCCee
Confidence 9999999999999986
No 369
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.5e-34 Score=344.93 Aligned_cols=202 Identities=24% Similarity=0.393 Sum_probs=167.0
Q ss_pred ccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhh
Q 001438 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQ 459 (1077)
Q Consensus 380 ~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~ 459 (1077)
..++++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. ++
T Consensus 318 ~~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~-----------~~ 383 (530)
T PRK15064 318 NALEVENLTKGFDN---GPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSEN-----------AN 383 (530)
T ss_pred ceEEEEeeEEeeCC---ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc-----------eE
Confidence 36999999999964 35899999999999999999999999999999999999999999999883 46
Q ss_pred eeEEccCCC--ccc-ccHHHHHhcCC-CCCCHHHHHHHHHHHhHHHHHhcCccch-hhhhcCCCCCCChHHHHHHHHHHH
Q 001438 460 IGLVNQEPA--LFA-TTIRENILYGK-DDATMEEITRAAKLSEAMSFISNLPERF-ETQVGERGIQLSGGQKQRIAISRA 534 (1077)
Q Consensus 460 i~~v~Q~~~--lf~-~ti~~ni~~~~-~~~~~~~~~~~~~~~~~~~~i~~l~~g~-~t~~~~~g~~LSgGqkqri~lARa 534 (1077)
+||++|++. +++ .|++||+.+.. .....+++.+.++ .+ |+ .........+||||||||++||||
T Consensus 384 i~~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~---------~~--~l~~~~~~~~~~~LSgGq~qrv~la~a 452 (530)
T PRK15064 384 IGYYAQDHAYDFENDLTLFDWMSQWRQEGDDEQAVRGTLG---------RL--LFSQDDIKKSVKVLSGGEKGRMLFGKL 452 (530)
T ss_pred EEEEcccccccCCCCCcHHHHHHHhccCCccHHHHHHHHH---------Hc--CCChhHhcCcccccCHHHHHHHHHHHH
Confidence 999999974 444 49999986432 1111222222222 22 12 123456677999999999999999
Q ss_pred hccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhh-cCEEEEEECCEEE-EecChhHHhcC
Q 001438 535 IVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIV-KTGSHEELISN 608 (1077)
Q Consensus 535 l~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~-~~g~~~~l~~~ 608 (1077)
++.+|++|||||||++||+.+.+.+.+.|++. +.|+|+|||+++.+.. ||+|++|++|+++ ..|+++++++.
T Consensus 453 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~~ 526 (530)
T PRK15064 453 MMQKPNVLVMDEPTNHMDMESIESLNMALEKY--EGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEEYLRS 526 (530)
T ss_pred HhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHhCCEEEEEECCeEEEcCCCHHHHHHH
Confidence 99999999999999999999999999999876 4599999999999875 9999999999998 78998887653
No 370
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=2e-34 Score=312.22 Aligned_cols=202 Identities=20% Similarity=0.288 Sum_probs=157.8
Q ss_pred EeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEE-----------ECCeeCCCCCH
Q 001438 385 KDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEIL-----------LDGNNIKGLDL 453 (1077)
Q Consensus 385 ~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~-----------~~g~~~~~~~~ 453 (1077)
.|++++|++. ..+|+|+| .+++||+++|+||||||||||+++|+|+++|++|+|. ++|+++.+...
T Consensus 4 ~~~~~~y~~~--~~~l~~i~-~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~ 80 (255)
T cd03236 4 DEPVHRYGPN--SFKLHRLP-VPREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFT 80 (255)
T ss_pred cCcceeecCc--chhhhcCC-CCCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhH
Confidence 3688999632 35899999 4999999999999999999999999999999999996 88888866533
Q ss_pred HHHhh--heeEEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHH
Q 001438 454 KWLRQ--QIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAI 531 (1077)
Q Consensus 454 ~~~r~--~i~~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~l 531 (1077)
...+. .++|++|++.+++.++.+|+.........+ ..+ . +.++.+ |++......+.+||||||||++|
T Consensus 81 ~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~l~~~~~~--~~~---~---~~l~~~--gl~~~~~~~~~~LS~G~~qrv~l 150 (255)
T cd03236 81 KLLEGDVKVIVKPQYVDLIPKAVKGKVGELLKKKDER--GKL---D---ELVDQL--ELRHVLDRNIDQLSGGELQRVAI 150 (255)
T ss_pred HhhhcccceeeecchhccCchHHHHHHHHHhchhHHH--HHH---H---HHHHHc--CCchhhcCChhhCCHHHHHHHHH
Confidence 33332 478999988777666666665432111111 111 1 222222 34455667788999999999999
Q ss_pred HHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHhh-cCEEEEEECCEEEEec
Q 001438 532 SRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTG 600 (1077)
Q Consensus 532 ARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g 600 (1077)
|||++.+|+++||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||+|++|+ |++.+.|
T Consensus 151 aral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~~~~~~ad~i~~l~-~~~~~~~ 220 (255)
T cd03236 151 AAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLAVLDYLSDYIHCLY-GEPGAYG 220 (255)
T ss_pred HHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEC-CCCCcce
Confidence 999999999999999999999999999999998875 47999999999999875 99999994 5566544
No 371
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=100.00 E-value=9.9e-34 Score=287.74 Aligned_cols=211 Identities=29% Similarity=0.401 Sum_probs=174.6
Q ss_pred ccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCH-HHHhh
Q 001438 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDL-KWLRQ 458 (1077)
Q Consensus 380 ~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~-~~~r~ 458 (1077)
.-|+++||++.|.+ +++|+|+|++|++||..+|+||||||||||+++++|.++|++|.+.+.|+....-+. .++|+
T Consensus 30 ~li~l~~v~v~r~g---k~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk 106 (257)
T COG1119 30 PLIELKNVSVRRNG---KKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRK 106 (257)
T ss_pred ceEEecceEEEECC---EeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHH
Confidence 45999999999974 469999999999999999999999999999999999999999999999999987776 89999
Q ss_pred heeEEccCCCc-c--cccHHHHHhcCC------C--CCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHH
Q 001438 459 QIGLVNQEPAL-F--ATTIRENILYGK------D--DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQ 527 (1077)
Q Consensus 459 ~i~~v~Q~~~l-f--~~ti~~ni~~~~------~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkq 527 (1077)
+||+|+-+-.. | +.+++|-+.-|. . ..+.++..++..+.+. + |.....+..-.+||-||||
T Consensus 107 ~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~------~--g~~~la~r~~~~LS~Ge~r 178 (257)
T COG1119 107 RIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLEL------L--GAKHLADRPFGSLSQGEQR 178 (257)
T ss_pred HhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHH------c--chhhhccCchhhcCHhHHH
Confidence 99999865321 2 447888776442 1 3344443333332221 1 3444455666789999999
Q ss_pred HHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh---CCCeEEEEccCchhHhh-cCEEEEEECCEEEEecC
Q 001438 528 RIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM---VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGS 601 (1077)
Q Consensus 528 ri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~---~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~ 601 (1077)
|+-|||||+.+|.+||||||+++||...++.+.+.|.++. .+.++|+|||+.+.+.. .++++.+++|+++.+|.
T Consensus 179 rvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~lll~~g~v~~~g~ 256 (257)
T COG1119 179 RVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVAQGK 256 (257)
T ss_pred HHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEEEeeCCceeeccc
Confidence 9999999999999999999999999999999999998874 36899999999999865 79999999999998874
No 372
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.9e-34 Score=339.88 Aligned_cols=211 Identities=19% Similarity=0.339 Sum_probs=167.8
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHH-HHhhh
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLK-WLRQQ 459 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~-~~r~~ 459 (1077)
.|+++|+++.| .++|+|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|+++...+.. .+++.
T Consensus 250 ~i~~~~l~~~~-----~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 324 (491)
T PRK10982 250 ILEVRNLTSLR-----QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHG 324 (491)
T ss_pred EEEEeCccccc-----CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCC
Confidence 58999999974 1489999999999999999999999999999999999999999999999999876643 35677
Q ss_pred eeEEccCC---Ccccc-cHHHHHhcC-----CCC---CCHHHHHHHHHHHhHHHHHhcCccchh-hhhcCCCCCCChHHH
Q 001438 460 IGLVNQEP---ALFAT-TIRENILYG-----KDD---ATMEEITRAAKLSEAMSFISNLPERFE-TQVGERGIQLSGGQK 526 (1077)
Q Consensus 460 i~~v~Q~~---~lf~~-ti~~ni~~~-----~~~---~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~~~~~g~~LSgGqk 526 (1077)
++|+||++ .+|+. |+.+|+.+. ... ....+..+ + ..+.++.+ ++. ........+||||||
T Consensus 325 i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~l~~~--~l~~~~~~~~~~~LSgGq~ 397 (491)
T PRK10982 325 FALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKS--D---TQWVIDSM--RVKTPGHRTQIGSLSGGNQ 397 (491)
T ss_pred CEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHH--H---HHHHHHhc--CccCCCcccccccCCcHHH
Confidence 99999996 35654 777663221 111 01111111 1 11223333 221 124566779999999
Q ss_pred HHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChh
Q 001438 527 QRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHE 603 (1077)
Q Consensus 527 qri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~ 603 (1077)
||++||||++.+|+||||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||++++|++|+++..++.+
T Consensus 398 qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~~~~~~~ 476 (491)
T PRK10982 398 QKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLVAGIVDTK 476 (491)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhCCEEEEEECCEEEEEEccc
Confidence 99999999999999999999999999999999999998864 58999999999999865 9999999999999887654
No 373
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=8.9e-34 Score=271.12 Aligned_cols=226 Identities=24% Similarity=0.439 Sum_probs=176.6
Q ss_pred EEEEeEEEEcCCC------CCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHH
Q 001438 382 IEFKDVSFCYPSR------PDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKW 455 (1077)
Q Consensus 382 i~~~~v~~~y~~~------~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~ 455 (1077)
++++|+++.|..+ ....+.+.|||++++|+.+||+|.||||||||.++|.|..+|++|+|.+||+++.--+-..
T Consensus 5 LeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~~ 84 (267)
T COG4167 5 LEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSF 84 (267)
T ss_pred hhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchHh
Confidence 4667776665322 1234689999999999999999999999999999999999999999999999987666666
Q ss_pred HhhheeEEccCCCc-ccccHHHHH----hcCC-------CCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCCh
Q 001438 456 LRQQIGLVNQEPAL-FATTIRENI----LYGK-------DDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSG 523 (1077)
Q Consensus 456 ~r~~i~~v~Q~~~l-f~~ti~~ni----~~~~-------~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSg 523 (1077)
..++|-.++|||.- ||- |-|| ..+. +..+.+++.+.++++ .-+|+-.+- ....||-
T Consensus 85 R~k~IRMiFQDpnts~NP--Rl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~V------GL~Pdhan~----~~~~la~ 152 (267)
T COG4167 85 RSKRIRMIFQDPNTSLNP--RLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMV------GLLPDHANY----YPHMLAP 152 (267)
T ss_pred hhhheeeeecCCccccCh--hhhhhhHhcchhhhcccCChHHHHHHHHHHHHHh------ccCcccccc----chhhcCc
Confidence 66789999999952 432 2222 1111 112233444444443 446764332 4568999
Q ss_pred HHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHH--hCCCeEEEEccCchhHhh-cCEEEEEECCEEEEec
Q 001438 524 GQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRV--MVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTG 600 (1077)
Q Consensus 524 Gqkqri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~--~~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g 600 (1077)
|||||+||||||+-+|+|+|.||+..+||...+.++.+...++ +.|..-|.|++++-.++. +|+|+||++|+++|.|
T Consensus 153 ~QKQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG~iKHi~D~viVM~EG~vvE~G 232 (267)
T COG4167 153 GQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVERG 232 (267)
T ss_pred hhHHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhhHhhhhcccEEEEecCceeecC
Confidence 9999999999999999999999999999999999998887665 358999999999999998 9999999999999999
Q ss_pred ChhHHhcCCCch-HHHHHHH
Q 001438 601 SHEELISNPNSA-YAALVQL 619 (1077)
Q Consensus 601 ~~~~l~~~~~~~-~~~~~~~ 619 (1077)
++.+++..|... -++++++
T Consensus 233 ~t~~v~a~P~~~~TkRlieS 252 (267)
T COG4167 233 STADVLASPLHELTKRLIES 252 (267)
T ss_pred ChhhhhcCCccHHHHHHHHH
Confidence 999999876533 3344443
No 374
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.3e-33 Score=301.15 Aligned_cols=321 Identities=16% Similarity=0.216 Sum_probs=250.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccccCCchhHHHHHhhcHHHHHHHHHhhHHHHHHHHHHHHHH
Q 001438 752 VIVHAIEHLSFGIMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQNFGLVTAS 831 (1077)
Q Consensus 752 ~~~~~~~~~~~~~~~~~~~~~Lr~~l~~~llr~p~~FFD~~~~~~G~IlnR~s~D~~~i~~~l~~~l~~~~~~~~~~~~~ 831 (1077)
+++.-+|.++...+.+...+++-.++|+|+......|.-. ..+|+.+.-+.+-.+.+. ++.....++...+.-+..+
T Consensus 273 G~~~nlRtfLWi~VqQyttR~ie~~lfrHlh~LSlrwHL~--rrtGeVLrvmdrGtssvt-ll~yvVF~i~PtllDl~va 349 (790)
T KOG0056|consen 273 GFLNNLRTFLWIPVQQYTTREIETELFRHLHNLSLRWHLN--RRTGEVLRVMDRGTSSVT-LLEYVVFQIGPTLLDLGVA 349 (790)
T ss_pred cchhhhheeEEEEhhHhHHHHHHHHHHHHHHhhceeeeec--ccccceeehhccCcchhh-HHHHHHhhcccHHHHhhhh
Confidence 4566678888888888999999999999999999999985 889999888888777766 5544444444444444444
Q ss_pred HHHHH-HHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHcchHHHHHhcchHHHHHHHHHHhh
Q 001438 832 FVIAF-ILNWRITLVVVATYPLIISGHISEKLFFQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELV 910 (1077)
Q Consensus 832 i~i~~-~~~w~l~l~~l~~~Pl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Etl~Gi~tIrAf~~e~~~~~~f~~~~~ 910 (1077)
++--+ ..+|+.+++++.+..+.+.......-+..++.|+......+..+...+++-+-.||+-|++|+++.++|.+..+
T Consensus 350 ~vYF~~~Fn~wFgLIVfl~m~lY~~~Ti~iTeWRTk~rR~Mn~~~nesrAr~vDsllNFETVKyy~Ae~yEverYreAil 429 (790)
T KOG0056|consen 350 MVYFFIKFNIWFGLIVFLMMLLYCYVTIKITEWRTKARRKMNNSWNESRARQVDSLLNFETVKYYNAEDYEVERYREAIL 429 (790)
T ss_pred hhhhhhhHhHHHHHHHHHHHHHHhheeeeeehhhHHHHHHhhhhhhhhhhhhhhhhhcchhhhccCchhhhHHHHHHHHH
Confidence 44333 35777777665544433322111111111222333333334444556899999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 001438 911 EPSKRSFIRGQIAGIFYGISQFFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLALVPDLLKGNQMA 990 (1077)
Q Consensus 911 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 990 (1077)
..++..++......+.....+.++.++......+.++++..+..++|+++.+..+++...+|+.....++..+|+...-.
T Consensus 430 ~Yqk~E~ks~~sLnfLN~~Qn~Ii~lgll~gsll~aY~Vt~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nfiDm 509 (790)
T KOG0056|consen 430 KYQKQEWKSLASLNFLNIVQNGIIGLGLLAGSLLCAYRVTEQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNFIDM 509 (790)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhHHhhhhheeeeeeeeccccccceehHHHHHHHHhCchHHHHHHHHHHHHhhhhH
Confidence 99999998877777777777777777766666666667778899999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCccCC-CCcccccccccEEEeeeeeeCCCCCcccccccceeeeeCCCEEEEECCCCCCHHHHHHHHhhc
Q 001438 991 ASVFEVLDRKTQVIGD-IGEELTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRF 1069 (1077)
Q Consensus 991 ~ri~~~l~~~~~~~~~-~~~~~~~~~G~I~f~nVsf~Y~~~~~~~VLk~vsl~I~~GekVaIVGrTGsGKSTLi~lL~Rf 1069 (1077)
|++|+++++++++.+. +..++...+|.|+|+||+|+|.+ .+|||+||||+++||++||+|||||+||||++.+||||
T Consensus 510 Enmfdllkee~eVvd~P~a~pl~~~~G~i~fsnvtF~Y~p--~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRf 587 (790)
T KOG0056|consen 510 ENMFDLLKEEPEVVDLPGAPPLKVTQGKIEFSNVTFAYDP--GKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRF 587 (790)
T ss_pred HHHHHHhhcCchhhcCCCCCCccccCCeEEEEEeEEecCC--CCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHH
Confidence 9999999999887653 33344456899999999999964 45789999999999999999999999999999999999
Q ss_pred cCCCCCCC
Q 001438 1070 YDPTAGKA 1077 (1077)
Q Consensus 1070 yd~~~G~i 1077 (1077)
||.++|+|
T Consensus 588 fdv~sGsI 595 (790)
T KOG0056|consen 588 FDVNSGSI 595 (790)
T ss_pred hhccCceE
Confidence 99999986
No 375
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=2.2e-33 Score=336.23 Aligned_cols=210 Identities=24% Similarity=0.308 Sum_probs=164.6
Q ss_pred ccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCC-CccEEEECCeeCCC-CCHHHHh
Q 001438 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEP-LSGEILLDGNNIKG-LDLKWLR 457 (1077)
Q Consensus 380 ~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~-~~G~i~~~g~~~~~-~~~~~~r 457 (1077)
..++++|+++.|++ ..+|+|+||++++||+++|+||||||||||+++|+|+.+| ++|+|+++|+++.. ......|
T Consensus 259 ~~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~ 335 (490)
T PRK10938 259 PRIVLNNGVVSYND---RPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIK 335 (490)
T ss_pred ceEEEeceEEEECC---eeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHH
Confidence 35999999999964 3589999999999999999999999999999999998876 69999999987642 2334567
Q ss_pred hheeEEccCCCccc---ccHHHHHhcCCC-------CCCHHHHHHHHHHHhHHHHHhcCccchhh-hhcCCCCCCChHHH
Q 001438 458 QQIGLVNQEPALFA---TTIRENILYGKD-------DATMEEITRAAKLSEAMSFISNLPERFET-QVGERGIQLSGGQK 526 (1077)
Q Consensus 458 ~~i~~v~Q~~~lf~---~ti~~ni~~~~~-------~~~~~~~~~~~~~~~~~~~i~~l~~g~~t-~~~~~g~~LSgGqk 526 (1077)
++++|++|++.++. .++++++.++.. ....+. .+ +.... ++.+ |+.. .......+||||||
T Consensus 336 ~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~---l~~~--~l~~~~~~~~~~~LSgGq~ 407 (490)
T PRK10938 336 KHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQ-QK--LAQQW---LDIL--GIDKRTADAPFHSLSWGQQ 407 (490)
T ss_pred hhceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHH-HH--HHHHH---HHHc--CCchhhccCchhhCCHHHH
Confidence 78999999987642 367777654321 011111 11 11112 2222 2332 34556678999999
Q ss_pred HHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CC-CeEEEEccCchhHhh--cCEEEEEECCEEEEec
Q 001438 527 QRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VG-RTTVVVAHRLSTIRN--ADVIAVVQGRKIVKTG 600 (1077)
Q Consensus 527 qri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~-~~-~t~i~vtH~~~~~~~--~d~i~~l~~G~i~~~g 600 (1077)
||++||||++.+|++|||||||++||+.+.+.+.+.|+++. ++ .|+|+|||+++.+.. ||++++|++|+|++.-
T Consensus 408 qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l~~G~i~~~~ 485 (490)
T PRK10938 408 RLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRLEFVPDGDIYRYV 485 (490)
T ss_pred HHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhheeEEEecCCceEEee
Confidence 99999999999999999999999999999999999998875 34 469999999999863 8999999999998753
No 376
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.4e-33 Score=273.54 Aligned_cols=221 Identities=25% Similarity=0.460 Sum_probs=183.5
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECC-eeCCCCCHHHH-hh
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDG-NNIKGLDLKWL-RQ 458 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g-~~~~~~~~~~~-r~ 458 (1077)
.++++|++.+|++ ..+|+++||++.+||.-+|+||||+||||++..|.|-.+|+.|+++++| .|++.++...+ |.
T Consensus 5 iL~~~~vsVsF~G---F~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~ 81 (249)
T COG4674 5 ILYLDGVSVSFGG---FKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARA 81 (249)
T ss_pred eEEEeceEEEEcc---eeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHh
Confidence 4789999999963 4689999999999999999999999999999999999999999999999 99999988776 45
Q ss_pred heeEEccCCCcccc-cHHHHHhcCCCC-CCH-------HHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHH
Q 001438 459 QIGLVNQEPALFAT-TIRENILYGKDD-ATM-------EEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRI 529 (1077)
Q Consensus 459 ~i~~v~Q~~~lf~~-ti~~ni~~~~~~-~~~-------~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri 529 (1077)
.||-=+|.|..|.. ||+||+.+.... .+. ....+..+..+.+..+ |+......-...||-||||++
T Consensus 82 GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~i-----gL~~~~~~~A~~LSHGqKQwL 156 (249)
T COG4674 82 GIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATI-----GLGDERDRLAALLSHGQKQWL 156 (249)
T ss_pred ccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHc-----ccchhhhhhhhhhccchhhhh
Confidence 69999999999977 999999765321 100 0011112222222222 222233334568999999999
Q ss_pred HHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHhcC
Q 001438 530 AISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISN 608 (1077)
Q Consensus 530 ~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 608 (1077)
.|+.-+.++|++|+||||++++-.+.....-+.|+.+..++++++|-|++.+++. ||+|-||+.|++..+|+.+++.++
T Consensus 157 EIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~~hsilVVEHDM~Fvr~~A~~VTVlh~G~VL~EGsld~v~~d 236 (249)
T COG4674 157 EIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAGKHSILVVEHDMGFVREIADKVTVLHEGSVLAEGSLDEVQND 236 (249)
T ss_pred hhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhcCceEEEEeccHHHHHHhhheeEEEeccceeecccHHHhhcC
Confidence 9999999999999999999999888888888999999889999999999999986 999999999999999999999766
Q ss_pred C
Q 001438 609 P 609 (1077)
Q Consensus 609 ~ 609 (1077)
+
T Consensus 237 p 237 (249)
T COG4674 237 P 237 (249)
T ss_pred c
Confidence 4
No 377
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.8e-33 Score=280.34 Aligned_cols=155 Identities=46% Similarity=0.721 Sum_probs=144.1
Q ss_pred EEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhheeE
Q 001438 383 EFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGL 462 (1077)
Q Consensus 383 ~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 462 (1077)
+++|++|.|++. ++++++||++++||+++|+||||||||||+++|.|+++|++|+|+++|.++.+.....+++.++|
T Consensus 1 ~~~~~~~~~~~~---~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~ 77 (157)
T cd00267 1 EIENLSFRYGGR---TALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGY 77 (157)
T ss_pred CeEEEEEEeCCe---eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEE
Confidence 368999999743 58999999999999999999999999999999999999999999999999987777777888999
Q ss_pred EccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccCCCEE
Q 001438 463 VNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSIL 542 (1077)
Q Consensus 463 v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~p~il 542 (1077)
++| ||||||||++||||++.+|+++
T Consensus 78 ~~q-------------------------------------------------------lS~G~~~r~~l~~~l~~~~~i~ 102 (157)
T cd00267 78 VPQ-------------------------------------------------------LSGGQRQRVALARALLLNPDLL 102 (157)
T ss_pred Eee-------------------------------------------------------CCHHHHHHHHHHHHHhcCCCEE
Confidence 999 9999999999999999999999
Q ss_pred EEeCcCCCCCHHHHHHHHHHHHHHhC-CCeEEEEccCchhHhh-cCEEEEEECCE
Q 001438 543 LLDEATSALDAESENSVQEALDRVMV-GRTTVVVAHRLSTIRN-ADVIAVVQGRK 595 (1077)
Q Consensus 543 llDEpts~lD~~~~~~i~~~l~~~~~-~~t~i~vtH~~~~~~~-~d~i~~l~~G~ 595 (1077)
+|||||++||.++...+.+.+.+..+ ++|++++||+++.+.. ||++++|++|+
T Consensus 103 ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 103 LLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157 (157)
T ss_pred EEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCcC
Confidence 99999999999999999999988654 5899999999999987 79999999975
No 378
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=3e-33 Score=284.14 Aligned_cols=145 Identities=28% Similarity=0.407 Sum_probs=131.5
Q ss_pred EeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhheeEEc
Q 001438 385 KDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVN 464 (1077)
Q Consensus 385 ~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~ 464 (1077)
.|++++|++ ..++++. |++++||+++|+||||||||||+++|+|+++|++|+|.++|+ .++|++
T Consensus 4 ~~l~~~~~~---~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~------------~i~~~~ 67 (177)
T cd03222 4 PDCVKRYGV---FFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGI------------TPVYKP 67 (177)
T ss_pred CCeEEEECC---EEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCE------------EEEEEc
Confidence 478899963 3578884 899999999999999999999999999999999999999996 389999
Q ss_pred cCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccCCCEEEE
Q 001438 465 QEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLL 544 (1077)
Q Consensus 465 Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~p~illl 544 (1077)
|++. ||||||||++||||++.+|++++|
T Consensus 68 q~~~----------------------------------------------------LSgGq~qrv~laral~~~p~lllL 95 (177)
T cd03222 68 QYID----------------------------------------------------LSGGELQRVAIAAALLRNATFYLF 95 (177)
T ss_pred ccCC----------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEE
Confidence 8653 999999999999999999999999
Q ss_pred eCcCCCCCHHHHHHHHHHHHHHh-C-CCeEEEEccCchhHhh-cCEEEEEECCEEE
Q 001438 545 DEATSALDAESENSVQEALDRVM-V-GRTTVVVAHRLSTIRN-ADVIAVVQGRKIV 597 (1077)
Q Consensus 545 DEpts~lD~~~~~~i~~~l~~~~-~-~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~ 597 (1077)
||||++||+++.+.+.+.++++. + ++|+|++||+++.+.. ||++++|+++-.+
T Consensus 96 DEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~~~~~ 151 (177)
T cd03222 96 DEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIHVFEGEPGV 151 (177)
T ss_pred ECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHhCCEEEEEcCCCcc
Confidence 99999999999999999998864 4 4899999999999875 9999999988654
No 379
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.2e-30 Score=290.59 Aligned_cols=365 Identities=15% Similarity=0.200 Sum_probs=267.1
Q ss_pred HHhhHHhHHHHHHHHHHHhhc-cCchh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 001438 707 IAGAQMPLFALGVSQALVAYY-MDWDT-TQREVKKITILFCCAAVITVIVHAIEHLSFGIMGERLTLRVREKMFSAILSN 784 (1077)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~Lr~~l~~~llr~ 784 (1077)
.+.......+..+...++..- .+... ...........|++..+...++.-++.+.|+++.+++.++.-.+.|++++..
T Consensus 41 ~aK~l~v~vp~~~~~~id~l~~~~~~~a~~~~~~~~~~~y~iar~~s~~F~el~~~vfa~v~q~~iR~~~~~vf~~~~~l 120 (591)
T KOG0057|consen 41 GAKILNVQVPFIFKLIIDGLNDADGNPAVLSTITALLAGYGIARLGSSVFNELRNFVFAKVAQRVIRDSSSDVFRHLMSL 120 (591)
T ss_pred hhhHhheehHHHHHHHHhhhhhcccCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334555566666666665431 11100 0011223356788888899999999999999999999999999999999999
Q ss_pred CccccccccCCchhHHHHHhhcHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 785 EIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQNFGLVTASFVIAFI-LNWRITLVVVATYPLIISGHISEKLF 863 (1077)
Q Consensus 785 p~~FFD~~~~~~G~IlnR~s~D~~~i~~~l~~~l~~~~~~~~~~~~~i~i~~~-~~w~l~l~~l~~~Pl~i~~~~~~~~~ 863 (1077)
+.+||-. ..+|.|.++..+-...+...+...+..++..++-+..+.....+ ..+..+++.+..+-.-+.+......+
T Consensus 121 d~~~~~~--~~tG~l~~~idRgsraI~~vl~~~V~~i~p~~~~i~~v~~~l~~~~Ga~~~li~~~~v~~Y~a~Ti~~t~~ 198 (591)
T KOG0057|consen 121 DLSFFLS--RGTGALNRIIDRGSRAISFVLSAMVFNIIPTLFEIALVSGILYYKFGAAFALITLGTVGAYAAFTIVVTRW 198 (591)
T ss_pred hHHhhcC--CCcchHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHhheeEEeehhH
Confidence 9999994 77899998888888888887777777666665554444333222 23333333332222221111111111
Q ss_pred HHhhhhhHHHHHHHHhHHHHHHHcchHHHHHhcchHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 864 FQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRSFIRGQIAGIFYGISQFFIFSSYGLALW 943 (1077)
Q Consensus 864 ~~~~~~~~~~~~~~~~~~~~Etl~Gi~tIrAf~~e~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 943 (1077)
--++.++...+...+...+-++|.|-.+||+|+.|+++.++|++.+.+..+...+.....++....+..+.....+.+.+
T Consensus 199 Rn~fR~~~N~Adn~as~~~~dsL~Nye~VKsfNnE~~Ea~~y~~~l~~~~~~~~~~~~sl~~lnfgQ~~iFsv~~~~im~ 278 (591)
T KOG0057|consen 199 RNRFRKAMNNADNSASRRAYDSLINYEIVKSFNNEEYEASRYDGSLKTYERAGLKYSSSLAFLNFGQKAIFSVALTFIMV 278 (591)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHhhhhHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 12233445666777778889999999999999999999999999999998888877777777666666666677777777
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHcCCCCccCCCCcccccccccEEEeee
Q 001438 944 YGSVLMGKELASFKSVMKSFMVLIVTALAMGETLALVPDLLKGNQMAASVFEVLDRKTQVIGDIGEELTNVEGTIELRGV 1023 (1077)
Q Consensus 944 ~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~G~I~f~nV 1023 (1077)
.|..-+..+.+++++++.....+.....++..+...+.++..+..-.+.++...+....+... +.+....+|.|+|+||
T Consensus 279 l~~~gi~~~~mtvgdlv~~n~l~~qL~~~l~~Lg~vyr~~~q~l~Dm~~~~~l~~~~~~i~~~-~~~i~~~~~~I~F~dV 357 (591)
T KOG0057|consen 279 LGSNGIAAGKMTVGDLVMVNSLLFQLSLPLNFLGSVYRELRQALTDMRTLFILLEVDEDIQEA-ALPIELFGGSIEFDDV 357 (591)
T ss_pred HHhhhhhhccccccchhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHhhhhhhhhhhhc-cCCcccCCCcEEEEee
Confidence 777778888999999998888888888899988888888877777666666665543333221 1222345688999999
Q ss_pred eeeCCCCCcccccccceeeeeCCCEEEEECCCCCCHHHHHHHHhhccCCCCCCC
Q 001438 1024 HFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKA 1077 (1077)
Q Consensus 1024 sf~Y~~~~~~~VLk~vsl~I~~GekVaIVGrTGsGKSTLi~lL~Rfyd~~~G~i 1077 (1077)
+|.|++ .++||||+||+|++||||||||++||||||++++|+||+| .+|+|
T Consensus 358 ~f~y~~--k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I 408 (591)
T KOG0057|consen 358 HFSYGP--KRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSI 408 (591)
T ss_pred EEEeCC--CCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcE
Confidence 999974 3458999999999999999999999999999999999999 89986
No 380
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=1.4e-32 Score=332.78 Aligned_cols=204 Identities=27% Similarity=0.426 Sum_probs=164.0
Q ss_pred ccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhh
Q 001438 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQ 459 (1077)
Q Consensus 380 ~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~ 459 (1077)
..++++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++ ++ +
T Consensus 323 ~~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~-~~----------~ 388 (556)
T PRK11819 323 KVIEAENLSKSFGD---RLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGE-TV----------K 388 (556)
T ss_pred eEEEEEeEEEEECC---eeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-ce----------E
Confidence 36999999999964 3589999999999999999999999999999999999999999999954 21 5
Q ss_pred eeEEccCC-Ccccc-cHHHHHhcCCCCC--CHHHHHHHHHHHhHHHHHhcCccchhh-hhcCCCCCCChHHHHHHHHHHH
Q 001438 460 IGLVNQEP-ALFAT-TIRENILYGKDDA--TMEEITRAAKLSEAMSFISNLPERFET-QVGERGIQLSGGQKQRIAISRA 534 (1077)
Q Consensus 460 i~~v~Q~~-~lf~~-ti~~ni~~~~~~~--~~~~~~~~~~~~~~~~~i~~l~~g~~t-~~~~~g~~LSgGqkqri~lARa 534 (1077)
|||+||++ .+++. |++||+.++.... ...+. .+. .. ++.+ |+.. .......+||||||||++||||
T Consensus 389 i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~-~~~---~~---l~~~--~l~~~~~~~~~~~LSgG~~qrv~la~a 459 (556)
T PRK11819 389 LAYVDQSRDALDPNKTVWEEISGGLDIIKVGNREI-PSR---AY---VGRF--NFKGGDQQKKVGVLSGGERNRLHLAKT 459 (556)
T ss_pred EEEEeCchhhcCCCCCHHHHHHhhcccccccccHH-HHH---HH---HHhC--CCChhHhcCchhhCCHHHHHHHHHHHH
Confidence 99999997 56654 9999998764211 11110 111 11 2222 2221 2345667899999999999999
Q ss_pred hccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhh-cCEEEEEEC-CEEE-EecChhHHhcC
Q 001438 535 IVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQG-RKIV-KTGSHEELISN 608 (1077)
Q Consensus 535 l~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~-~d~i~~l~~-G~i~-~~g~~~~l~~~ 608 (1077)
++.+|++|||||||++||+.+...+.+.|.++. .|+|+|||+++.+.. ||+|++|++ |++. ..|+++++.++
T Consensus 460 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~tvi~vtHd~~~~~~~~d~i~~l~~~g~~~~~~g~~~~~~~~ 534 (556)
T PRK11819 460 LKQGGNVLLLDEPTNDLDVETLRALEEALLEFP--GCAVVISHDRWFLDRIATHILAFEGDSQVEWFEGNFQEYEED 534 (556)
T ss_pred HhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCC--CeEEEEECCHHHHHHhCCEEEEEECCCeEEEecCCHHHHHHH
Confidence 999999999999999999999999999998863 489999999998875 999999996 7876 47887776543
No 381
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=1.9e-32 Score=331.74 Aligned_cols=202 Identities=27% Similarity=0.426 Sum_probs=162.6
Q ss_pred ccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhh
Q 001438 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQ 459 (1077)
Q Consensus 380 ~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~ 459 (1077)
..++++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.+++ ++ +
T Consensus 321 ~~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~-~~----------~ 386 (552)
T TIGR03719 321 KVIEAENLSKGFGD---KLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGE-TV----------K 386 (552)
T ss_pred eEEEEeeEEEEECC---eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECC-ce----------E
Confidence 36999999999964 3599999999999999999999999999999999999999999999954 21 5
Q ss_pred eeEEccCCC-cccc-cHHHHHhcCCCCC--CHHHHHHHHHHHhHHHHHhcCccchhh-hhcCCCCCCChHHHHHHHHHHH
Q 001438 460 IGLVNQEPA-LFAT-TIRENILYGKDDA--TMEEITRAAKLSEAMSFISNLPERFET-QVGERGIQLSGGQKQRIAISRA 534 (1077)
Q Consensus 460 i~~v~Q~~~-lf~~-ti~~ni~~~~~~~--~~~~~~~~~~~~~~~~~i~~l~~g~~t-~~~~~g~~LSgGqkqri~lARa 534 (1077)
|||++|++. +++. |++||+.++.... ...+ ..+. +.++.+ |+.. .......+||||||||++||||
T Consensus 387 i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~-~~~~------~~l~~~--~l~~~~~~~~~~~LSgGe~qrv~la~a 457 (552)
T TIGR03719 387 LAYVDQSRDALDPNKTVWEEISGGLDIIQLGKRE-VPSR------AYVGRF--NFKGSDQQKKVGQLSGGERNRVHLAKT 457 (552)
T ss_pred EEEEeCCccccCCCCcHHHHHHhhccccccCcch-HHHH------HHHHhC--CCChhHhcCchhhCCHHHHHHHHHHHH
Confidence 999999973 6654 9999998864211 1111 0111 112222 2322 2345667899999999999999
Q ss_pred hccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhh-cCEEEEEEC-CEEE-EecChhHHh
Q 001438 535 IVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQG-RKIV-KTGSHEELI 606 (1077)
Q Consensus 535 l~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~-~d~i~~l~~-G~i~-~~g~~~~l~ 606 (1077)
++.+|++|||||||++||+.+.+.+.+.|+++. .|+|+|||+++.+.. ||+|++|++ |++. ..|++++..
T Consensus 458 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~~viivsHd~~~~~~~~d~i~~l~~~~~~~~~~g~~~~~~ 530 (552)
T TIGR03719 458 LKSGGNVLLLDEPTNDLDVETLRALEEALLEFA--GCAVVISHDRWFLDRIATHILAFEGDSHVEWFEGNYSEYE 530 (552)
T ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC--CeEEEEeCCHHHHHHhCCEEEEEECCCeEEEeCCCHHHHH
Confidence 999999999999999999999999999998873 489999999999875 999999997 5876 457776654
No 382
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=9.2e-33 Score=255.91 Aligned_cols=195 Identities=29% Similarity=0.445 Sum_probs=158.3
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCC---ccEEEECCeeCCCCCHHHHh
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPL---SGEILLDGNNIKGLDLKWLR 457 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~---~G~i~~~g~~~~~~~~~~~r 457 (1077)
.+.++||+.+-+++ ..|-|+||+|.+||++-+.||||||||||+.-+.|.+.++ +|++.+|++++..++.. +
T Consensus 2 ~l~l~nvsl~l~g~---cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~--q 76 (213)
T COG4136 2 MLCLKNVSLRLPGS---CLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAA--Q 76 (213)
T ss_pred ceeeeeeeecCCCc---eEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchh--h
Confidence 46789999877643 5899999999999999999999999999999999999874 89999999999877654 5
Q ss_pred hheeEEccCCCcccc-cHHHHHhcCCCCC-CHHH----HHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHH
Q 001438 458 QQIGLVNQEPALFAT-TIRENILYGKDDA-TMEE----ITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAI 531 (1077)
Q Consensus 458 ~~i~~v~Q~~~lf~~-ti~~ni~~~~~~~-~~~~----~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~l 531 (1077)
+++|+.+||+|||+- +|.+||.|..|.. +-+. ...|++.. |++......+.+||||||.||+|
T Consensus 77 Rq~GiLFQD~lLFphlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~-----------gL~g~f~~dP~tlSGGQrARvaL 145 (213)
T COG4136 77 RQIGILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERS-----------GLDGAFHQDPATLSGGQRARVAL 145 (213)
T ss_pred hheeeeecccccccccccccceEEecCcccccHHHHhhHHHHHHHh-----------ccchhhhcChhhcCcchHHHHHH
Confidence 689999999999987 9999999987532 2121 12222222 34444455667899999999999
Q ss_pred HHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHH-HHh-CCCeEEEEccCchhHhhcCEEEEE
Q 001438 532 SRAIVKNPSILLLDEATSALDAESENSVQEALD-RVM-VGRTTVVVAHRLSTIRNADVIAVV 591 (1077)
Q Consensus 532 ARal~~~p~illlDEpts~lD~~~~~~i~~~l~-~~~-~~~t~i~vtH~~~~~~~~d~i~~l 591 (1077)
-|+|+..|+.++||||+|.||..-+.++.+-.- +.+ .|..+|+|||+.+.++...||+-|
T Consensus 146 ~R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~DvpagsrVie~ 207 (213)
T COG4136 146 LRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQDVPAGSRVIEM 207 (213)
T ss_pred HHHHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCCCCCeeeee
Confidence 999999999999999999999998888876553 333 588999999999988865565543
No 383
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-32 Score=336.10 Aligned_cols=200 Identities=28% Similarity=0.429 Sum_probs=161.6
Q ss_pred ccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhh
Q 001438 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQ 459 (1077)
Q Consensus 380 ~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~ 459 (1077)
..|+++|+++.|++ ..+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++. .+
T Consensus 311 ~~l~~~~l~~~y~~---~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~ 376 (638)
T PRK10636 311 PLLKMEKVSAGYGD---RIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG-----------IK 376 (638)
T ss_pred ceEEEEeeEEEeCC---eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC-----------EE
Confidence 36999999999963 35899999999999999999999999999999999999999999999741 15
Q ss_pred eeEEccCC--Cccc-ccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchh-hhhcCCCCCCChHHHHHHHHHHHh
Q 001438 460 IGLVNQEP--ALFA-TTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFE-TQVGERGIQLSGGQKQRIAISRAI 535 (1077)
Q Consensus 460 i~~v~Q~~--~lf~-~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~~~~~g~~LSgGqkqri~lARal 535 (1077)
+||++|++ .+.. .|+.+++....+....+++.. .+..+ ++. .........||||||||++||||+
T Consensus 377 igy~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~---------~L~~~--~l~~~~~~~~~~~LSgGekqRl~La~~l 445 (638)
T PRK10636 377 LGYFAQHQLEFLRADESPLQHLARLAPQELEQKLRD---------YLGGF--GFQGDKVTEETRRFSGGEKARLVLALIV 445 (638)
T ss_pred EEEecCcchhhCCccchHHHHHHHhCchhhHHHHHH---------HHHHc--CCChhHhcCchhhCCHHHHHHHHHHHHH
Confidence 99999985 3443 388888742111111112211 12222 221 123455678999999999999999
Q ss_pred ccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhh-cCEEEEEECCEEE-EecChhHHh
Q 001438 536 VKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIV-KTGSHEELI 606 (1077)
Q Consensus 536 ~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~-~~g~~~~l~ 606 (1077)
+.+|++|||||||++||+.+...+.+.|.++ . .|+|+|||++..+.. ||+|++|++|+++ ..|++++..
T Consensus 446 ~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~-~-gtvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 516 (638)
T PRK10636 446 WQRPNLLLLDEPTNHLDLDMRQALTEALIDF-E-GALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDYQ 516 (638)
T ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc-C-CeEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCHHHHH
Confidence 9999999999999999999999999999887 3 499999999999875 9999999999997 788888763
No 384
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.7e-32 Score=271.20 Aligned_cols=215 Identities=30% Similarity=0.412 Sum_probs=178.0
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcc--cCCCccEEEECCeeCCCCCHHHH-h
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERF--YEPLSGEILLDGNNIKGLDLKWL-R 457 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~--~~~~~G~i~~~g~~~~~~~~~~~-r 457 (1077)
.++++|++.+-.++ +.+|+++||+|++||+.+|.||||||||||.++|+|. |++++|+|.+||+||.++++++. |
T Consensus 3 ~L~I~dLhv~v~~~--keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr 80 (251)
T COG0396 3 MLEIKDLHVEVEGK--KEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERAR 80 (251)
T ss_pred eeEEeeeEEEecCc--hhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHh
Confidence 47899999987542 3699999999999999999999999999999999997 68999999999999999998764 5
Q ss_pred hheeEEccCCCcccc-cHHHHHhcCCCCC---------CHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHH
Q 001438 458 QQIGLVNQEPALFAT-TIRENILYGKDDA---------TMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQ 527 (1077)
Q Consensus 458 ~~i~~v~Q~~~lf~~-ti~~ni~~~~~~~---------~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkq 527 (1077)
..|...+|.|.=++| ++.+-+..+.... ..+++.++++..+.. |+-++..+++ .+|||+|+
T Consensus 81 ~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~------~~~l~R~vN~---GFSGGEkK 151 (251)
T COG0396 81 AGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLD------EEFLERYVNE---GFSGGEKK 151 (251)
T ss_pred cCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCC------HHHhhcccCC---CcCcchHH
Confidence 679999999999999 9999887543211 122223333322221 1122333443 69999999
Q ss_pred HHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHhh--cCEEEEEECCEEEEecChhH
Q 001438 528 RIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN--ADVIAVVQGRKIVKTGSHEE 604 (1077)
Q Consensus 528 ri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~--~d~i~~l~~G~i~~~g~~~~ 604 (1077)
|.-|+..++.+|++.|||||=|+||..+-+.+-+.+..++ +++++++|||.-..+.+ .|++.||-+|+|+..|.+ |
T Consensus 152 R~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vhvl~~GrIv~sG~~-e 230 (251)
T COG0396 152 RNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSGDP-E 230 (251)
T ss_pred HHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEEEEECCEEEecCCH-H
Confidence 9999999999999999999999999999999999998876 58999999999998876 599999999999999998 7
Q ss_pred Hhc
Q 001438 605 LIS 607 (1077)
Q Consensus 605 l~~ 607 (1077)
|..
T Consensus 231 l~~ 233 (251)
T COG0396 231 LAE 233 (251)
T ss_pred HHH
Confidence 654
No 385
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=3.2e-32 Score=333.19 Aligned_cols=199 Identities=26% Similarity=0.377 Sum_probs=158.1
Q ss_pred ccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhh
Q 001438 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQ 459 (1077)
Q Consensus 380 ~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~ 459 (1077)
..++++|+++.|++. .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++. .+
T Consensus 507 ~~L~~~~ls~~y~~~--~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~-----------~~ 573 (718)
T PLN03073 507 PIISFSDASFGYPGG--PLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAK-----------VR 573 (718)
T ss_pred ceEEEEeeEEEeCCC--CeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCc-----------ee
Confidence 469999999999632 35899999999999999999999999999999999999999999998762 36
Q ss_pred eeEEccCCCcccccHHHHHhcC----CCCCCHHHHHHHHHHHhHHHHHhcCccchh-hhhcCCCCCCChHHHHHHHHHHH
Q 001438 460 IGLVNQEPALFATTIRENILYG----KDDATMEEITRAAKLSEAMSFISNLPERFE-TQVGERGIQLSGGQKQRIAISRA 534 (1077)
Q Consensus 460 i~~v~Q~~~lf~~ti~~ni~~~----~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~~~~~g~~LSgGqkqri~lARa 534 (1077)
|||++|++. ...++.+|.... .+....+++...++. + |+. ........+||||||||++||||
T Consensus 574 igyv~Q~~~-~~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~---------~--gl~~~~~~~~~~~LSgGqkqRvaLAra 641 (718)
T PLN03073 574 MAVFSQHHV-DGLDLSSNPLLYMMRCFPGVPEQKLRAHLGS---------F--GVTGNLALQPMYTLSGGQKSRVAFAKI 641 (718)
T ss_pred EEEEecccc-ccCCcchhHHHHHHHhcCCCCHHHHHHHHHH---------C--CCChHHhcCCccccCHHHHHHHHHHHH
Confidence 999999873 222455553211 122223333222222 1 222 12345677999999999999999
Q ss_pred hccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhh-cCEEEEEECCEEE-EecChhHH
Q 001438 535 IVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIV-KTGSHEEL 605 (1077)
Q Consensus 535 l~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~-~~g~~~~l 605 (1077)
++.+|++|||||||++||+.+...+.+.+.+. + .|+|+|||+++.+.. ||++++|++|+++ ..|++++.
T Consensus 642 L~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~-~-gtvIivSHd~~~i~~~~drv~~l~~G~i~~~~g~~~~~ 712 (718)
T PLN03073 642 TFKKPHILLLDEPSNHLDLDAVEALIQGLVLF-Q-GGVLMVSHDEHLISGSVDELWVVSEGKVTPFHGTFHDY 712 (718)
T ss_pred HhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc-C-CEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCCHHHH
Confidence 99999999999999999999999998888765 3 499999999999876 9999999999998 67877664
No 386
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=2.5e-32 Score=335.11 Aligned_cols=203 Identities=24% Similarity=0.418 Sum_probs=161.4
Q ss_pred ccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhh
Q 001438 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQ 459 (1077)
Q Consensus 380 ~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~ 459 (1077)
..|+++|++++|++ .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+ |.++ +
T Consensus 318 ~~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~----------~ 383 (635)
T PRK11147 318 IVFEMENVNYQIDG---KQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKL----------E 383 (635)
T ss_pred ceEEEeeeEEEECC---eEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCc----------E
Confidence 35899999999964 35899999999999999999999999999999999999999999998 5332 5
Q ss_pred eeEEccCC-Ccccc-cHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchh-hhhcCCCCCCChHHHHHHHHHHHhc
Q 001438 460 IGLVNQEP-ALFAT-TIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFE-TQVGERGIQLSGGQKQRIAISRAIV 536 (1077)
Q Consensus 460 i~~v~Q~~-~lf~~-ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~~~~~g~~LSgGqkqri~lARal~ 536 (1077)
|||++|++ .+++. |+.||+.++.+......... +.. +.+..+ |+. .........||||||||++||||++
T Consensus 384 i~y~~q~~~~l~~~~tv~e~l~~~~~~~~~~~~~~--~~~---~~l~~~--~l~~~~~~~~~~~LSgGekqRl~la~al~ 456 (635)
T PRK11147 384 VAYFDQHRAELDPEKTVMDNLAEGKQEVMVNGRPR--HVL---GYLQDF--LFHPKRAMTPVKALSGGERNRLLLARLFL 456 (635)
T ss_pred EEEEeCcccccCCCCCHHHHHHhhcccccccchHH--HHH---HHHHhc--CCCHHHHhChhhhCCHHHHHHHHHHHHHh
Confidence 99999986 46655 99999987543211010000 111 112222 111 1234455689999999999999999
Q ss_pred cCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhh-cCEEEEEE-CCEEEE-ecChhHH
Q 001438 537 KNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQ-GRKIVK-TGSHEEL 605 (1077)
Q Consensus 537 ~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~-~d~i~~l~-~G~i~~-~g~~~~l 605 (1077)
.+|++|||||||++||+.+...+.+.|++. +.|+|+|||+.+.+.. ||+|++|+ +|++.+ .|++++.
T Consensus 457 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~~g~y~~y 526 (635)
T PRK11147 457 KPSNLLILDEPTNDLDVETLELLEELLDSY--QGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGGYHDA 526 (635)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHHHHhC--CCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEccCCHHHH
Confidence 999999999999999999999999999876 4599999999999865 99999998 899876 5666665
No 387
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=100.00 E-value=3.1e-32 Score=276.42 Aligned_cols=155 Identities=25% Similarity=0.401 Sum_probs=127.7
Q ss_pred cccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhheeEEccCCCcccccHHH
Q 001438 397 VAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRE 476 (1077)
Q Consensus 397 ~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ 476 (1077)
.++|+|+||++++|++++|+||||||||||+++++ +++|++.++|.. ... .++.++|++|
T Consensus 8 ~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il----~~~G~v~~~~~~-~~~----~~~~~~~~~q----------- 67 (176)
T cd03238 8 VHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGL----YASGKARLISFL-PKF----SRNKLIFIDQ----------- 67 (176)
T ss_pred eeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHh----hcCCcEEECCcc-ccc----ccccEEEEhH-----------
Confidence 46899999999999999999999999999999986 369999998762 111 2345888887
Q ss_pred HHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccC--CCEEEEeCcCCCCCHH
Q 001438 477 NILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKN--PSILLLDEATSALDAE 554 (1077)
Q Consensus 477 ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~--p~illlDEpts~lD~~ 554 (1077)
.+ +++.++-+.. ..+++..+||||||||++||||++.+ |+++||||||++||++
T Consensus 68 --------------~~---------~l~~~~L~~~-~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~ 123 (176)
T cd03238 68 --------------LQ---------FLIDVGLGYL-TLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQ 123 (176)
T ss_pred --------------HH---------HHHHcCCCcc-ccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHH
Confidence 01 1222221111 24567789999999999999999999 9999999999999999
Q ss_pred HHHHHHHHHHHHh-CCCeEEEEccCchhHhhcCEEEEEECCE
Q 001438 555 SENSVQEALDRVM-VGRTTVVVAHRLSTIRNADVIAVVQGRK 595 (1077)
Q Consensus 555 ~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~~d~i~~l~~G~ 595 (1077)
+.+.+.+.|+++. .++|+|++||+++.+..||++++|++|+
T Consensus 124 ~~~~l~~~l~~~~~~g~tvIivSH~~~~~~~~d~i~~l~~g~ 165 (176)
T cd03238 124 DINQLLEVIKGLIDLGNTVILIEHNLDVLSSADWIIDFGPGS 165 (176)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEECCCC
Confidence 9999999998875 5899999999999988899999997654
No 388
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=2.6e-32 Score=328.45 Aligned_cols=194 Identities=26% Similarity=0.341 Sum_probs=160.2
Q ss_pred ccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhh
Q 001438 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQ 459 (1077)
Q Consensus 380 ~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~ 459 (1077)
..++++|++++|++ ..|+++||+|++||+++|+||||||||||+++|+|+.+|++|+|.++ . +
T Consensus 339 ~~l~~~~ls~~~~~----~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~-~------------~ 401 (590)
T PRK13409 339 TLVEYPDLTKKLGD----FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE-L------------K 401 (590)
T ss_pred eEEEEcceEEEECC----EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe-e------------e
Confidence 35899999999963 24899999999999999999999999999999999999999999986 1 5
Q ss_pred eeEEccCCCcc-cccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccC
Q 001438 460 IGLVNQEPALF-ATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKN 538 (1077)
Q Consensus 460 i~~v~Q~~~lf-~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~ 538 (1077)
++|+||++.++ +.|++||+.++......+. . . .+.++.+ |++........+||||||||++|||||+.+
T Consensus 402 i~y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~--~---~---~~~L~~l--~l~~~~~~~~~~LSGGe~QRvaiAraL~~~ 471 (590)
T PRK13409 402 ISYKPQYIKPDYDGTVEDLLRSITDDLGSSY--Y---K---SEIIKPL--QLERLLDKNVKDLSGGELQRVAIAACLSRD 471 (590)
T ss_pred EEEecccccCCCCCcHHHHHHHHhhhcChHH--H---H---HHHHHHC--CCHHHHhCCcccCCHHHHHHHHHHHHHhcC
Confidence 99999998765 5699999987532222111 1 1 1112222 333345566778999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEccCchhHhh-cCEEEEEECCEEEEecC
Q 001438 539 PSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGS 601 (1077)
Q Consensus 539 p~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~ 601 (1077)
|++|||||||++||+.+...+.+.|+++. .++|+|+|||+++.+.. |||+++|++ ++...|+
T Consensus 472 p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~~-~~~~~g~ 536 (590)
T PRK13409 472 ADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVFEG-EPGKHGH 536 (590)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcC-cceeeee
Confidence 99999999999999999999999999874 37999999999999865 999999965 8877776
No 389
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=4.6e-32 Score=353.04 Aligned_cols=219 Identities=26% Similarity=0.410 Sum_probs=175.8
Q ss_pred ccEEEEeEEEEcCCC----------CCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCC--CccEEEECCee
Q 001438 380 GHIEFKDVSFCYPSR----------PDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEP--LSGEILLDGNN 447 (1077)
Q Consensus 380 ~~i~~~~v~~~y~~~----------~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~--~~G~i~~~g~~ 447 (1077)
..+.++||++..+.. ....+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+
T Consensus 866 ~~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~ 945 (1470)
T PLN03140 866 LAMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFP 945 (1470)
T ss_pred ceEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCcc
Confidence 368999999987521 123699999999999999999999999999999999999763 78999999987
Q ss_pred CCCCCHHHHhhheeEEccCCCcccc-cHHHHHhcCC----C-CCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCC-CC
Q 001438 448 IKGLDLKWLRQQIGLVNQEPALFAT-TIRENILYGK----D-DATMEEITRAAKLSEAMSFISNLPERFETQVGERG-IQ 520 (1077)
Q Consensus 448 ~~~~~~~~~r~~i~~v~Q~~~lf~~-ti~~ni~~~~----~-~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g-~~ 520 (1077)
.+ ...+|+.+|||+|++.+++. ||+||+.++. + ..+.++.. ....+..+.+ ++.+-.++.+|..+ ..
T Consensus 946 ~~---~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~--~~v~~vl~~l-gL~~~~~~~vg~~~~~~ 1019 (1470)
T PLN03140 946 KK---QETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKM--MFVDEVMELV-ELDNLKDAIVGLPGVTG 1019 (1470)
T ss_pred CC---hHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHH--HHHHHHHHHC-CChhHhCCccCCCCCCC
Confidence 64 24567789999999988765 9999998752 1 11222211 1111222222 34444577787544 68
Q ss_pred CChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchh-H-hhcCEEEEEEC-CEE
Q 001438 521 LSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLST-I-RNADVIAVVQG-RKI 596 (1077)
Q Consensus 521 LSgGqkqri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~-~-~~~d~i~~l~~-G~i 596 (1077)
||||||||++|||+|+.+|+||+||||||+||+.+...+.+.|+++. +|+|+|+++|+++. + +.+|++++|++ |++
T Consensus 1020 LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~ 1099 (1470)
T PLN03140 1020 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQV 1099 (1470)
T ss_pred cCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEE
Confidence 99999999999999999999999999999999999999999999874 58999999999984 4 56999999996 899
Q ss_pred EEecChhH
Q 001438 597 VKTGSHEE 604 (1077)
Q Consensus 597 ~~~g~~~~ 604 (1077)
+..|+..+
T Consensus 1100 v~~G~~~~ 1107 (1470)
T PLN03140 1100 IYSGPLGR 1107 (1470)
T ss_pred EEECCccc
Confidence 99998754
No 390
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.97 E-value=3.2e-31 Score=270.29 Aligned_cols=188 Identities=31% Similarity=0.423 Sum_probs=152.5
Q ss_pred CcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhheeEEccCCCccc--cc
Q 001438 396 DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFA--TT 473 (1077)
Q Consensus 396 ~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~--~t 473 (1077)
...+|+||||++++||.+||||+||||||||+++|+|.|+|++|+|.++|+ |++...-..=|+ .|
T Consensus 39 ~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~-------------v~~li~lg~Gf~pelT 105 (249)
T COG1134 39 EFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGK-------------VAPLIELGAGFDPELT 105 (249)
T ss_pred eEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcce-------------EehhhhcccCCCcccc
Confidence 346899999999999999999999999999999999999999999999995 554443333343 49
Q ss_pred HHHHHhcCC--CCCCHHHHH----HHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCc
Q 001438 474 IRENILYGK--DDATMEEIT----RAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEA 547 (1077)
Q Consensus 474 i~~ni~~~~--~~~~~~~~~----~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~p~illlDEp 547 (1077)
-||||.+-. ...+.+++. +..+-+++-+| +.....++|-|++-|++.|-|.-.+|||||+||.
T Consensus 106 GreNi~l~~~~~G~~~~ei~~~~~eIieFaELG~f-----------i~~PvktYSSGM~aRLaFsia~~~~pdILllDEv 174 (249)
T COG1134 106 GRENIYLRGLILGLTRKEIDEKVDEIIEFAELGDF-----------IDQPVKTYSSGMYARLAFSVATHVEPDILLLDEV 174 (249)
T ss_pred hHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHH-----------hhCchhhccHHHHHHHHHhhhhhcCCCEEEEehh
Confidence 999996521 122333332 22333333333 3344568999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHH-hCCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHhc
Q 001438 548 TSALDAESENSVQEALDRV-MVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELIS 607 (1077)
Q Consensus 548 ts~lD~~~~~~i~~~l~~~-~~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 607 (1077)
.+.-|+.=.++=.+.+.++ .+++|+|+|||+++.+++ |||+++|++|+|...|+++|..+
T Consensus 175 lavGD~~F~~K~~~rl~e~~~~~~tiv~VSHd~~~I~~~Cd~~i~l~~G~i~~~G~~~~vi~ 236 (249)
T COG1134 175 LAVGDAAFQEKCLERLNELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEEVIP 236 (249)
T ss_pred hhcCCHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhcCeeEEEeCCEEEEcCCHHHHHH
Confidence 9999999777777777776 678999999999999976 99999999999999999999875
No 391
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=2.5e-31 Score=252.23 Aligned_cols=227 Identities=24% Similarity=0.433 Sum_probs=180.7
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECC-----eeCCCCCHHH
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDG-----NNIKGLDLKW 455 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g-----~~~~~~~~~~ 455 (1077)
-++++++++.|.+.. -.+|+||++.|||..+|||+||||||||+++|.+-+.|+.|+|.++- .|+-.++..+
T Consensus 6 LL~V~~lsk~Yg~~~---gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEae 82 (258)
T COG4107 6 LLSVSGLSKLYGPGK---GCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAE 82 (258)
T ss_pred ceeehhhhhhhCCCc---CccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHH
Confidence 478899999997543 57999999999999999999999999999999999999999998865 2344455444
Q ss_pred H----hhheeEEccCCC--cc-----cccHHHHHh-cCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCCh
Q 001438 456 L----RQQIGLVNQEPA--LF-----ATTIRENIL-YGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSG 523 (1077)
Q Consensus 456 ~----r~~i~~v~Q~~~--lf-----~~ti~~ni~-~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSg 523 (1077)
. |..-|+|.|+|. |- .+.|-|-+. .|.. .|-++... +.+|+++..- ..+.+.+.+.++||
T Consensus 83 RR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~R--HYG~iR~~-----a~~WL~~VEI-~~~RiDD~PrtFSG 154 (258)
T COG4107 83 RRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGAR--HYGNIRAE-----AQDWLEEVEI-DLDRIDDLPRTFSG 154 (258)
T ss_pred HHHHhhhccceeecCccccceeeeccCCccchhHHhhhhh--hhhhHHHH-----HHHHHHhccc-CcccccCcccccch
Confidence 3 345899999994 21 124444332 2222 23333221 2233433322 23467788899999
Q ss_pred HHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEccCchhHhh-cCEEEEEECCEEEEec
Q 001438 524 GQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTG 600 (1077)
Q Consensus 524 Gqkqri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g 600 (1077)
|++||+.|||-|...|+++++||||.+||...+.++.+.++.+- -+-.+++|||++..++- +||.+||++|+++|.|
T Consensus 155 GMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~VarLla~rlmvmk~g~vve~G 234 (258)
T COG4107 155 GMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVVESG 234 (258)
T ss_pred HHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHHHHHhhhcceeecCCCEeccc
Confidence 99999999999999999999999999999999999999998874 37899999999999986 9999999999999999
Q ss_pred ChhHHhcCCCchHHHHHH
Q 001438 601 SHEELISNPNSAYAALVQ 618 (1077)
Q Consensus 601 ~~~~l~~~~~~~~~~~~~ 618 (1077)
-.+.++..+...|.++.-
T Consensus 235 LTDrvLDDP~hPYTQLLV 252 (258)
T COG4107 235 LTDRVLDDPHHPYTQLLV 252 (258)
T ss_pred cccccccCCCCchHHHHH
Confidence 999999999999998764
No 392
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.97 E-value=5.1e-31 Score=269.22 Aligned_cols=203 Identities=25% Similarity=0.409 Sum_probs=155.1
Q ss_pred ccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhheeEEc-cCCCcc-cccHH
Q 001438 398 AIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVN-QEPALF-ATTIR 475 (1077)
Q Consensus 398 ~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~-Q~~~lf-~~ti~ 475 (1077)
++.+|+||+|++|++++++||||+||||++|+|.|+..|++|.|.++|.+...-..+.+| ++++|. |...+. .-.+.
T Consensus 38 ~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~~~~~~-~~~~v~gqk~ql~Wdlp~~ 116 (325)
T COG4586 38 EAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLR-SIGLVMGQKLQLWWDLPAL 116 (325)
T ss_pred hhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhHHHHHH-HHHHHhhhhheeeeechhh
Confidence 478999999999999999999999999999999999999999999999877654334444 455543 322211 11132
Q ss_pred HHHhcCC--CCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCH
Q 001438 476 ENILYGK--DDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDA 553 (1077)
Q Consensus 476 ~ni~~~~--~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~p~illlDEpts~lD~ 553 (1077)
|-+..-. -+..+++.. .++..+.+. | +++..+..+...||-|||.|.-||.||+++|+||+|||||=+||.
T Consensus 117 ds~~v~~~Iy~Ipd~~F~--~r~~~l~ei---L--dl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV 189 (325)
T COG4586 117 DSLEVLKLIYEIPDDEFA--ERLDFLTEI---L--DLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDV 189 (325)
T ss_pred hhHHHHHHHHhCCHHHHH--HHHHHHHHH---h--cchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcch
Confidence 3222111 012222221 122222221 1 345556667779999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHh--CCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHhcC
Q 001438 554 ESENSVQEALDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISN 608 (1077)
Q Consensus 554 ~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 608 (1077)
..+..|.+.+++.. .+.||++.||.++.+.. ||||++|+.|+++..|+.++|.+.
T Consensus 190 ~aq~~ir~Flke~n~~~~aTVllTTH~~~di~~lc~rv~~I~~Gqlv~dg~l~~l~~~ 247 (325)
T COG4586 190 NAQANIREFLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQEQ 247 (325)
T ss_pred hHHHHHHHHHHHHHHhhCceEEEEecchhhHHHhhhheEEeeCCcEeecccHHHHHHH
Confidence 99999999998763 58999999999999865 999999999999999999998754
No 393
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.97 E-value=1.5e-30 Score=313.74 Aligned_cols=222 Identities=31% Similarity=0.493 Sum_probs=181.6
Q ss_pred ccEEEEeEEEEcCCCC--CcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCC---CccEEEECCeeCCCCCHH
Q 001438 380 GHIEFKDVSFCYPSRP--DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEP---LSGEILLDGNNIKGLDLK 454 (1077)
Q Consensus 380 ~~i~~~~v~~~y~~~~--~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~---~~G~i~~~g~~~~~~~~~ 454 (1077)
..++++|++..-++.. .+.+|+|||.+++|||+.||.||||||||||+++|+|-.+. .+|+|.+||++ .+.+
T Consensus 24 ~~~~~~~~~~~~~~~~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~---~~~~ 100 (613)
T KOG0061|consen 24 VKLSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRP---RDSR 100 (613)
T ss_pred ceeEEEEEEEEecCCCCccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCcc---Cchh
Confidence 4688999998876542 46799999999999999999999999999999999999874 79999999953 4567
Q ss_pred HHhhheeEEccCCCcccc-cHHHHHhcCC----CC-CCHHHHHHHHHHHhHHHHHhcCccchhhhhcC-CCCCCChHHHH
Q 001438 455 WLRQQIGLVNQEPALFAT-TIRENILYGK----DD-ATMEEITRAAKLSEAMSFISNLPERFETQVGE-RGIQLSGGQKQ 527 (1077)
Q Consensus 455 ~~r~~i~~v~Q~~~lf~~-ti~~ni~~~~----~~-~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~-~g~~LSgGqkq 527 (1077)
.+|+..|||+||..+++. ||+|++.|.. |. .+.++..+ +..+..+.+ .|.+=-||.+|. ....+|||||+
T Consensus 101 ~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~--~V~~vi~~L-gL~~~~~t~ig~~~~rgiSGGErk 177 (613)
T KOG0061|consen 101 SFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRE--RVEEVISEL-GLEKCADTLIGNPGIRGLSGGERK 177 (613)
T ss_pred hhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHH--HHHHHHHHc-CChhhccceecCCCCCccccchhh
Confidence 788999999999999977 9999998864 22 12222221 111221111 122335788874 34689999999
Q ss_pred HHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchh--HhhcCEEEEEECCEEEEecChhH
Q 001438 528 RIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLST--IRNADVIAVVQGRKIVKTGSHEE 604 (1077)
Q Consensus 528 ri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~--~~~~d~i~~l~~G~i~~~g~~~~ 604 (1077)
|++||.-++.||+||+||||||+||..+..++.+.|+++. +|||||+.=|+++. ....|++++|.+|+++..|++++
T Consensus 178 Rvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~~~ 257 (613)
T KOG0061|consen 178 RVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSPRE 257 (613)
T ss_pred HHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecCHHH
Confidence 9999999999999999999999999999999999999874 69999999999985 46699999999999999999988
Q ss_pred Hhc
Q 001438 605 LIS 607 (1077)
Q Consensus 605 l~~ 607 (1077)
+.+
T Consensus 258 ~~~ 260 (613)
T KOG0061|consen 258 LLE 260 (613)
T ss_pred HHH
Confidence 753
No 394
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=8.8e-29 Score=266.79 Aligned_cols=316 Identities=18% Similarity=0.204 Sum_probs=253.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccccCCchhHHHHHhhcHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH-
Q 001438 758 EHLSFGIMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQNFGLVTASFVIAF- 836 (1077)
Q Consensus 758 ~~~~~~~~~~~~~~~Lr~~l~~~llr~p~~FFD~~~~~~G~IlnR~s~D~~~i~~~l~~~l~~~~~~~~~~~~~i~i~~- 836 (1077)
+..+|..+++.+.+.+-.+.|.|+...++.|.-. ..+|-+.....+-...++..+-..+...+..++-+...+++.+
T Consensus 2 r~~~fs~v~q~a~r~la~~~F~h~~~Lsl~fHl~--r~TGglsR~ierGtkgI~~i~~~~l~~i~P~~~Ei~l~~vi~~~ 79 (497)
T COG5265 2 RDRLFSPVGQIAVRVLAYVTFFHLHSLSLRFHLE--RRTGGLSRAIERGTKGIETILRWILFNILPTLVEISLVAVILWR 79 (497)
T ss_pred chHhhhHHHHHHHHHHHHHHHHHHHhcchhhhhh--cccCceeeHhhcCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 3456788899999999999999999999999984 6666665555555555666666666666666655555555544
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHcchHHHHHhcchHHHHHHHHHHhhhhhHHH
Q 001438 837 ILNWRITLVVVATYPLIISGHISEKLFFQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRS 916 (1077)
Q Consensus 837 ~~~w~l~l~~l~~~Pl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Etl~Gi~tIrAf~~e~~~~~~f~~~~~~~~~~~ 916 (1077)
.++|+.++++++++.+.+++.....-+--...+....+.+++++.+-++|-+-.||+.|+.|+.+..+|.+.++...++.
T Consensus 80 ~~~~~f~~~t~vtv~lY~~ftv~~s~wr~~~rr~~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~~a~ 159 (497)
T COG5265 80 VYGWWFALTTLVTVILYLLFTVIVSDWRTDFRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAA 159 (497)
T ss_pred hcccHHHHHHHHHHHHHHHhheeehhhhHHHHHhhhhhhhHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHHHHH
Confidence 46898888888877776665544433333334455566677777788999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 001438 917 FIRGQIAGIFYGISQFFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLALVPDLLKGNQMAASVFEV 996 (1077)
Q Consensus 917 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~ 996 (1077)
.+.....++.......+...+.......++..+..+.++.++++..-.++.....|+..+...+.++.++..-.++++.+
T Consensus 160 ~k~~~Sl~~Ln~gQ~~I~~~~l~~~m~~s~~~v~~g~~TvgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mfdL 239 (497)
T COG5265 160 IKVHVSLLVLNFGQTAIFSTGLRVMMTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDL 239 (497)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhhcHHHHhhccCCchhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHHh
Confidence 87766666666666666666777777788888899999999999998889999999999999999999999999999999
Q ss_pred HcCCCCccCC-CCcccc-cccccEEEeeeeeeCCCCCcccccccceeeeeCCCEEEEECCCCCCHHHHHHHHhhccCCCC
Q 001438 997 LDRKTQVIGD-IGEELT-NVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTA 1074 (1077)
Q Consensus 997 l~~~~~~~~~-~~~~~~-~~~G~I~f~nVsf~Y~~~~~~~VLk~vsl~I~~GekVaIVGrTGsGKSTLi~lL~Rfyd~~~ 1074 (1077)
++.+.++... ..++.+ -..|.|.|+||+|+|.+ ..|+|+|+||+|++|+||||||+||+||||+..+|+||||+++
T Consensus 240 l~~~~~v~d~pda~~L~~~~~g~v~F~~V~F~y~~--~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~s 317 (497)
T COG5265 240 LDVEAEVSDAPDAPPLWPVRLGAVAFINVSFAYDP--RRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNS 317 (497)
T ss_pred hccchhhccCCCCccccccccceEEEEEEEeeccc--cchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcC
Confidence 9987776543 334445 34689999999999954 4578999999999999999999999999999999999999999
Q ss_pred CCC
Q 001438 1075 GKA 1077 (1077)
Q Consensus 1075 G~i 1077 (1077)
|+|
T Consensus 318 G~I 320 (497)
T COG5265 318 GSI 320 (497)
T ss_pred ceE
Confidence 986
No 395
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.96 E-value=7.9e-29 Score=274.78 Aligned_cols=210 Identities=25% Similarity=0.395 Sum_probs=143.6
Q ss_pred CcccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEE--CCeeCCCCCH--
Q 001438 378 LSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILL--DGNNIKGLDL-- 453 (1077)
Q Consensus 378 ~~~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~--~g~~~~~~~~-- 453 (1077)
....+.++|++++|++ ..+++|..|++.+|+.+||+|+|||||||++++|.|-..|..=++.+ -.+++..-..
T Consensus 72 ~s~dvk~~sls~s~~g---~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls~e~~ps~~~a 148 (614)
T KOG0927|consen 72 ISRDVKIESLSLSFHG---VELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSREIEPSEKQA 148 (614)
T ss_pred ccccceeeeeeeccCC---ceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhcccCCCchHHH
Confidence 3456999999999974 45899999999999999999999999999999999988876544422 1111111000
Q ss_pred --------HHHhhheeEEccCCCcccccHHHHHhcCCCCCCHHHH---HH----------HHHHHhHHHHHhcCccch-h
Q 001438 454 --------KWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEI---TR----------AAKLSEAMSFISNLPERF-E 511 (1077)
Q Consensus 454 --------~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~---~~----------~~~~~~~~~~i~~l~~g~-~ 511 (1077)
.+.|.++.|. .|++.-..++...++. .+ ..+.+.. +.++ |. .
T Consensus 149 v~~v~~~~~~e~~rle~~-----------~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~i---l~gl--gf~~ 212 (614)
T KOG0927|consen 149 VQAVVMETDHERKRLEYL-----------AEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKI---LHGL--GFLS 212 (614)
T ss_pred HHHHhhhhHHHHHHHHHH-----------HHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHH---HHhc--CCCH
Confidence 0111111111 1111111011000000 00 0111111 1111 11 2
Q ss_pred hhhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhh-cCEEEE
Q 001438 512 TQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAV 590 (1077)
Q Consensus 512 t~~~~~g~~LSgGqkqri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~-~d~i~~ 590 (1077)
........+||||||.|++|||||+.+|++|||||||++||.++..-+.+.|.+.... ++++++|.-+++.. |.+|+.
T Consensus 213 ~m~~k~~~~~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~~-~lVi~sh~QDfln~vCT~Ii~ 291 (614)
T KOG0927|consen 213 EMQDKKVKDLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDRI-ILVIVSHSQDFLNGVCTNIIH 291 (614)
T ss_pred hHHHHHhhccCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccCc-eEEEEecchhhhhhHhhhhhe
Confidence 2334456789999999999999999999999999999999999999999999876433 89999999999987 999999
Q ss_pred EECCE-EEEecChhHHhc
Q 001438 591 VQGRK-IVKTGSHEELIS 607 (1077)
Q Consensus 591 l~~G~-i~~~g~~~~l~~ 607 (1077)
|++++ +...|++++...
T Consensus 292 l~~kkl~~y~Gnydqy~~ 309 (614)
T KOG0927|consen 292 LDNKKLIYYEGNYDQYVK 309 (614)
T ss_pred ecccceeeecCCHHHHhh
Confidence 99999 677888887764
No 396
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.96 E-value=5.9e-30 Score=252.51 Aligned_cols=136 Identities=43% Similarity=0.744 Sum_probs=118.7
Q ss_pred ccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhheeEEccCCCcccc-cHHHHH
Q 001438 400 FDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFAT-TIRENI 478 (1077)
Q Consensus 400 l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~-ti~~ni 478 (1077)
|+|+||++++||+++|+|+||||||||+++|+|.++|++|+|.++|.++...+....|+.++|++|++.++++ |++||
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~- 79 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVREN- 79 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHH-
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeecccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence 6899999999999999999999999999999999999999999999999998888999999999999999987 79999
Q ss_pred hcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCcCC
Q 001438 479 LYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATS 549 (1077)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~p~illlDEpts 549 (1077)
...+++.++++..+. .+..++.++.+...||||||||++||||++++|+++||||||+
T Consensus 80 ------~~~~~~~~~l~~l~~-------~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 80 ------ESDERIEEVLKKLGL-------EDLLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp ------HHHHHHHHHHHHTTH-------GGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred ------ccccccccccccccc-------ccccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 122334444433332 2235677888889999999999999999999999999999996
No 397
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=99.96 E-value=1.8e-25 Score=245.69 Aligned_cols=439 Identities=16% Similarity=0.201 Sum_probs=262.5
Q ss_pred HHHHHHHHHHHHHHHHHhCCc---hhhccCCChhHH---HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 129 GERQAAKMRMAYLRSMLNQDI---SLFDTEASTGEV---ISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFARVW 202 (1077)
Q Consensus 129 ~~~~~~~lr~~~~~~ll~~~~---~~f~~~~~~G~i---~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (1077)
-.+++...|.++.++++++=. .||.-...-|.+ =+.+++|+..+.+.......++.--+.-++..-..+.-..-
T Consensus 181 e~klaLafrtrL~~h~y~~Y~snqTyY~Vsn~d~~i~n~D~sLTeDI~~Fs~svahLysnLtKP~lDl~l~s~~L~~s~~ 260 (728)
T KOG0064|consen 181 ESKLALAFRTRLTRHAYDMYLSNQTFYKVSNLDSVIENADNSLTEDIAKFSDSVAHLYSNLTKPVLDLILISFTLLDSAT 260 (728)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCceEEEecccchhcCccchhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhc
Confidence 345556666666666655422 444321122333 34699999999888776555555444433222111111111
Q ss_pred HHH--HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHH
Q 001438 203 QIS--LVTLS--IVPLIALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYG 278 (1077)
Q Consensus 203 ~l~--l~~l~--~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~ 278 (1077)
..+ .+.++ .+.+-..+...+.....+.........+....+=+..+++-..|..|+..+.+.++.++..+......
T Consensus 261 s~g~~~~~~~~lvv~lTa~iLr~~sP~Fg~Lv~eeA~r~g~lr~~Hs~ii~NsEEIAfy~GhkvE~~ql~~sy~~L~~qm 340 (728)
T KOG0064|consen 261 SVGAAGITLAGLVVYLTAFILRAVSPKFGKLVAEEAARKGYLRYLHSNIITNSEEIAFYGGHKVELTQVDESYNRLVEQM 340 (728)
T ss_pred cccccchhhhhhHHHHHHHHHHHhCCchhhHHHHHHhhccHHHHHHHHHhccHHHHHhhcccHHHHHHHHHHHHHHHHHH
Confidence 111 10001 11111111111222222222222333333444567889999999999999999998888776655543
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------hcccC---HHH----HHHHHH-HHHHHHHHHHHh
Q 001438 279 RKAGLAKGLGLGSMHCVLFLSWSLLVWYVSVVVH------------KHISN---GGE----SFTTML-NVVIAGLSLGQA 338 (1077)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~------------~~~~~---~g~----~~~~~~-~~~~~~~~l~~~ 338 (1077)
......+.+..-+-+++ .=..|-|.-++. .+... .+. -|++-- .+.....++..+
T Consensus 341 ~li~k~r~~YiMleqF~-----mKYvWsg~GlvmvsiPI~~~t~~s~~~~~~~e~~~srt~~f~t~r~LL~saAdAieRl 415 (728)
T KOG0064|consen 341 NLIFKVRLWYIMLEQFV-----MKYTWSGTGLVMVSIPILTSTLASEGTLQLSEEGNSRTKEFITNRRLLLSAADAIERL 415 (728)
T ss_pred HHHHHHHHHHHHHHHHH-----HHHhhccCceEEEEeeeeecccCCCCcccccccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33222222222222221 122333322211 11110 111 122211 122233445555
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcc---Cc--------cccccccc-------CCCC-----CCCcccEEEEeEEEEcCCCC
Q 001438 339 APDITAFIRAKAAAYPIFEMIER---DT--------MSKASSKT-------GRKL-----DKLSGHIEFKDVSFCYPSRP 395 (1077)
Q Consensus 339 ~~~~~~~~~~~~s~~ri~~~l~~---~~--------~~~~~~~~-------~~~~-----~~~~~~i~~~~v~~~y~~~~ 395 (1077)
...+..+.+-..-..|+++.++. .. ..++.+.. +.+. ......|.++||-.--|..
T Consensus 416 MssyKeItqLaGyt~Rv~~mf~v~~dv~~g~~~k~~v~e~~~~~~~~e~r~s~~l~~~~~i~~~~gI~lenIpvItP~~- 494 (728)
T KOG0064|consen 416 MSSYKEITQLAGYTNRVFTMFSVLHDVHKGNYNKTAVPEILSSRTIDESRNSNPLPTTDAIRNFNGIILENIPVITPAG- 494 (728)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHhcccccccccCchhhccCccccccCCcCCccchhhcccceEEecCceeccCc-
Confidence 55566666666666677654421 00 00000000 0000 0012348899988877754
Q ss_pred CcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhheeEEccCCCcccccHH
Q 001438 396 DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIR 475 (1077)
Q Consensus 396 ~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~ 475 (1077)
..+...++|+|++|-.+.|.||||||||+|.++|.|+.|...|...+-- +.++-|+||.|++=-||+|
T Consensus 495 -~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P~-----------~~~mFYIPQRPYms~gtlR 562 (728)
T KOG0064|consen 495 -DVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIPR-----------PNNIFYIPQRPYMSGGTLR 562 (728)
T ss_pred -ceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCeeecCC-----------CcceEeccCCCccCcCccc
Confidence 2477999999999999999999999999999999999999888776533 2359999999998888999
Q ss_pred HHHhcCC-------CCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCcC
Q 001438 476 ENILYGK-------DDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEAT 548 (1077)
Q Consensus 476 ~ni~~~~-------~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~p~illlDEpt 548 (1077)
|-|.|+. ...++++++..+....+...+ +-..|.|... +--.-||||+|||+++||.+|++|+.-+|||+|
T Consensus 563 DQIIYPdS~e~~~~kg~~d~dL~~iL~~v~L~~i~-qr~~g~da~~-dWkd~LsgGekQR~~mARm~yHrPkyalLDEcT 640 (728)
T KOG0064|consen 563 DQIIYPDSSEQMKRKGYTDQDLEAILDIVHLEHIL-QREGGWDAVR-DWKDVLSGGEKQRMGMARMFYHRPKYALLDECT 640 (728)
T ss_pred ceeecCCcHHHHHhcCCCHHHHHHHHHHhhHHHHH-HhccChhhhc-cHHhhccchHHHHHHHHHHHhcCcchhhhhhhh
Confidence 9999874 345677787777777765433 3344554432 233469999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhhcCEEE
Q 001438 549 SALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIA 589 (1077)
Q Consensus 549 s~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~~d~i~ 589 (1077)
||+.++.|..+.++.++. |.+.|-||||.+..+.-...+
T Consensus 641 sAvsidvE~~i~~~ak~~--gi~llsithrpslwk~h~~ll 679 (728)
T KOG0064|consen 641 SAVSIDVEGKIFQAAKDA--GISLLSITHRPSLWKYHTHLL 679 (728)
T ss_pred cccccchHHHHHHHHHhc--CceEEEeecCccHHHHHHHHH
Confidence 999999999999988764 889999999999876544433
No 398
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.96 E-value=4.8e-28 Score=283.26 Aligned_cols=203 Identities=29% Similarity=0.417 Sum_probs=166.6
Q ss_pred cccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhh
Q 001438 379 SGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQ 458 (1077)
Q Consensus 379 ~~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~ 458 (1077)
+..++++|+++.|++. +++++++||.|.+|+++||+||||+|||||+++|+|...|.+|+|.+.-. +
T Consensus 319 ~~vl~~~~~~~~y~~~--~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~-v---------- 385 (530)
T COG0488 319 KLVLEFENVSKGYDGG--RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGET-V---------- 385 (530)
T ss_pred CeeEEEeccccccCCC--ceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCc-e----------
Confidence 4568999999999753 46899999999999999999999999999999999999999999987542 1
Q ss_pred heeEEccCC-Ccccc-cHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhc
Q 001438 459 QIGLVNQEP-ALFAT-TIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIV 536 (1077)
Q Consensus 459 ~i~~v~Q~~-~lf~~-ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~ 536 (1077)
++||.+|+. .+++. |+.|++.-..+.....++...+.... ++.. .+......||||||-|+.||+.++
T Consensus 386 ~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~-------F~~~---~~~~~v~~LSGGEk~Rl~La~ll~ 455 (530)
T COG0488 386 KIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFG-------FTGE---DQEKPVGVLSGGEKARLLLAKLLL 455 (530)
T ss_pred EEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcC-------CChH---HHhCchhhcCHhHHHHHHHHHHhc
Confidence 599999997 44444 99999986655444444443333221 2211 124556689999999999999999
Q ss_pred cCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhh-cCEEEEEECCEEEEe-cChhHHhc
Q 001438 537 KNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKT-GSHEELIS 607 (1077)
Q Consensus 537 ~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~-g~~~~l~~ 607 (1077)
.+|.+|||||||+.||.++...+.++|.+. .-|+|+|||+..++.. |++|+.+++ ++... |++++..+
T Consensus 456 ~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f--~Gtvl~VSHDr~Fl~~va~~i~~~~~-~~~~~~g~y~~y~~ 525 (530)
T COG0488 456 QPPNLLLLDEPTNHLDIESLEALEEALLDF--EGTVLLVSHDRYFLDRVATRIWLVED-KVEEFEGGYEDYLE 525 (530)
T ss_pred cCCCEEEEcCCCccCCHHHHHHHHHHHHhC--CCeEEEEeCCHHHHHhhcceEEEEcC-ceeEcCCCHHHHHH
Confidence 999999999999999999999999999876 4599999999999987 999999999 77665 78777654
No 399
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=5.5e-29 Score=241.80 Aligned_cols=188 Identities=23% Similarity=0.398 Sum_probs=154.9
Q ss_pred EEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhee
Q 001438 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (1077)
Q Consensus 382 i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 461 (1077)
++.+|++..-. +..++.++||++.+||.+-|.||||||||||+++|+|+++|++|+|+++|.+++... +..++.+-
T Consensus 3 L~a~~L~~~R~---e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~-~~~~~~l~ 78 (209)
T COG4133 3 LEAENLSCERG---ERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVR-ESYHQALL 78 (209)
T ss_pred chhhhhhhccC---cceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccch-hhHHHHHH
Confidence 45567776543 346899999999999999999999999999999999999999999999999887643 33467788
Q ss_pred EEccCCCcccc-cHHHHHhcCCC---CCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhcc
Q 001438 462 LVNQEPALFAT-TIRENILYGKD---DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVK 537 (1077)
Q Consensus 462 ~v~Q~~~lf~~-ti~~ni~~~~~---~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~ 537 (1077)
|+..+|-+=+. |++||+.|-.+ ..+.+.+.+|++.+++.++ +.+| + .+||-|||+|+||||-.+.
T Consensus 79 yLGH~~giK~eLTa~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g~-~dlp------~----~~LSAGQqRRvAlArL~ls 147 (209)
T COG4133 79 YLGHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAGL-EDLP------V----GQLSAGQQRRVALARLWLS 147 (209)
T ss_pred HhhccccccchhhHHHHHHHHHHHhCCCchhhHHHHHHHcCcccc-cccc------h----hhcchhHHHHHHHHHHHcC
Confidence 99888888655 99999998643 1345778888887766542 2333 2 3799999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHH-hCCCeEEEEccCchhHhh
Q 001438 538 NPSILLLDEATSALDAESENSVQEALDRV-MVGRTTVVVAHRLSTIRN 584 (1077)
Q Consensus 538 ~p~illlDEpts~lD~~~~~~i~~~l~~~-~~~~t~i~vtH~~~~~~~ 584 (1077)
.+++.|||||+++||.+....+...+... .+|-.||..||+.-.+..
T Consensus 148 ~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l~~~~ 195 (209)
T COG4133 148 PAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQPLPIAS 195 (209)
T ss_pred CCCceeecCcccccCHHHHHHHHHHHHHHhcCCCEEEEecCCccCCCc
Confidence 99999999999999999999998888764 468899999998766543
No 400
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.96 E-value=4.4e-29 Score=236.45 Aligned_cols=204 Identities=28% Similarity=0.391 Sum_probs=151.6
Q ss_pred cEEEEeEEEEcC----CCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCe----eCCCCC
Q 001438 381 HIEFKDVSFCYP----SRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGN----NIKGLD 452 (1077)
Q Consensus 381 ~i~~~~v~~~y~----~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~----~~~~~~ 452 (1077)
.+.++|++++|. +.-..++++|+||+++.||++++-||||||||||+++|-+-|.|++|+|.+.-. |+....
T Consensus 4 ~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~ 83 (235)
T COG4778 4 PLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAE 83 (235)
T ss_pred eeeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccC
Confidence 367788877762 112347999999999999999999999999999999999999999999998432 333333
Q ss_pred HH---HH-hhheeEEccCCCcccc-cHHHHHh-----cCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCC
Q 001438 453 LK---WL-RQQIGLVNQEPALFAT-TIRENIL-----YGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLS 522 (1077)
Q Consensus 453 ~~---~~-r~~i~~v~Q~~~lf~~-ti~~ni~-----~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LS 522 (1077)
+. +. |+.||||+|---..+- +-.|-+. .|.+ .+..-.++ ..+... .++|+.+... .+.++|
T Consensus 84 pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~gv~--~~~a~~~a---~~Ll~r-LnlperLW~L---aPaTFS 154 (235)
T COG4778 84 PREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVP--REVARAKA---ADLLTR-LNLPERLWSL---APATFS 154 (235)
T ss_pred hHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHcCCC--HHHHHHHH---HHHHHH-cCCCHHHhcC---CCcccC
Confidence 33 23 4569999996443332 2223222 2221 11111112 222222 2578777654 467999
Q ss_pred hHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHhh-cCEEEEEEC
Q 001438 523 GGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQG 593 (1077)
Q Consensus 523 gGqkqri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~-~d~i~~l~~ 593 (1077)
||++||+.|||.++-|-+||+|||||++||..+++.+.+.|.+.+ +|..+|=|-|+-+.-+. |||++-|..
T Consensus 155 GGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHDeevre~vadR~~~~~~ 227 (235)
T COG4778 155 GGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDEEVREAVADRLLDVSA 227 (235)
T ss_pred CchheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeeccHHHHHHHhhheeeccc
Confidence 999999999999999999999999999999999999999998764 69999999999887665 999987643
No 401
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.95 E-value=3.4e-28 Score=259.87 Aligned_cols=191 Identities=26% Similarity=0.358 Sum_probs=126.6
Q ss_pred cccccceeEEecCCcEEEEEcCCCCcHHHHH-HHHhcccCCCccEEEEC-C------eeCCCC---CHHHHhh-heeEEc
Q 001438 397 VAIFDKFCLDIPAGKIVALVGGSGSGKSTVI-SLIERFYEPLSGEILLD-G------NNIKGL---DLKWLRQ-QIGLVN 464 (1077)
Q Consensus 397 ~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~-~~l~g~~~~~~G~i~~~-g------~~~~~~---~~~~~r~-~i~~v~ 464 (1077)
..+|+|+||+|++||+++|+||||||||||+ ..+. .+|++.+. + ..+... .....+. ..++..
T Consensus 8 ~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~-----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (226)
T cd03270 8 EHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIY-----AEGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSPAIAI 82 (226)
T ss_pred hhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHH-----HHHHHHHhhcccchhhhhhcccCccccccccCCCceEEe
Confidence 4689999999999999999999999999996 4432 13433221 0 011000 0011111 234444
Q ss_pred cCCCc-cc-c-c---HHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhh-hhcCCCCCCChHHHHHHHHHHHhcc
Q 001438 465 QEPAL-FA-T-T---IRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFET-QVGERGIQLSGGQKQRIAISRAIVK 537 (1077)
Q Consensus 465 Q~~~l-f~-~-t---i~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t-~~~~~g~~LSgGqkqri~lARal~~ 537 (1077)
|++.. .+ . + +.+...+-......+...+. .+.++.+ |+.. .......+||||||||++||||++.
T Consensus 83 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~------~~~l~~~--~l~~~~~~~~~~~LSgG~~qrv~laral~~ 154 (226)
T cd03270 83 DQKTTSRNPRSTVGTVTEIYDYLRLLFARVGIRER------LGFLVDV--GLGYLTLSRSAPTLSGGEAQRIRLATQIGS 154 (226)
T ss_pred cCCCCCCCCCccHHHHHHHHHHHHHHhhhhhHHHH------HHHHHHC--CCCcccccCccCcCCHHHHHHHHHHHHHHh
Confidence 54431 11 1 2 22222110000000111111 1122222 2222 3566788999999999999999999
Q ss_pred CC--CEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHhhcCEEEEE------ECCEEEEec
Q 001438 538 NP--SILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRNADVIAVV------QGRKIVKTG 600 (1077)
Q Consensus 538 ~p--~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~~d~i~~l------~~G~i~~~g 600 (1077)
+| +++||||||++||+.+.+.+.+.|+++. +|.|+|+|||+++.+..||+|++| ++|+|+++|
T Consensus 155 ~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~~~~~~d~i~~l~~~~~~~~G~iv~~g 226 (226)
T cd03270 155 GLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDEDTIRAADHVIDIGPGAGVHGGEIVAQG 226 (226)
T ss_pred CCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHHHHHhCCEEEEeCCCccccCCEEEecC
Confidence 98 5999999999999999999999998864 589999999999998889999999 999999986
No 402
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.95 E-value=1.5e-27 Score=256.54 Aligned_cols=193 Identities=27% Similarity=0.431 Sum_probs=141.6
Q ss_pred cccceeEEecCCcEEEEEcCCCCcHHHHHHHHh-----cc-c----CCCcc-----------EEEECCeeCCCCC---H-
Q 001438 399 IFDKFCLDIPAGKIVALVGGSGSGKSTVISLIE-----RF-Y----EPLSG-----------EILLDGNNIKGLD---L- 453 (1077)
Q Consensus 399 ~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~-----g~-~----~~~~G-----------~i~~~g~~~~~~~---~- 453 (1077)
.|+|++++|+.|.+++|.|+||||||||++.++ +. . .|..+ -|.+|..+|..-+ +
T Consensus 10 nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~~~ 89 (261)
T cd03271 10 NLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSNPA 89 (261)
T ss_pred cCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCcHH
Confidence 589999999999999999999999999998653 11 1 12211 3666766664321 1
Q ss_pred ------HHHhh----------------heeEEccCCCc-ccccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccch
Q 001438 454 ------KWLRQ----------------QIGLVNQEPAL-FATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERF 510 (1077)
Q Consensus 454 ------~~~r~----------------~i~~v~Q~~~l-f~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~ 510 (1077)
+.+|+ .+.|..++... .+.|+.||+.|..... ++.++. +.++.+ |+
T Consensus 90 ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~---~~~~~~------~~L~~v--gL 158 (261)
T cd03271 90 TYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIP---KIARKL------QTLCDV--GL 158 (261)
T ss_pred HHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhh---hHHHHH------HHHHHc--CC
Confidence 11221 24455555443 3447777776543211 111111 122222 34
Q ss_pred hh-hhcCCCCCCChHHHHHHHHHHHhccC---CCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHhhc
Q 001438 511 ET-QVGERGIQLSGGQKQRIAISRAIVKN---PSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRNA 585 (1077)
Q Consensus 511 ~t-~~~~~g~~LSgGqkqri~lARal~~~---p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~~ 585 (1077)
.. ..++...+||||||||++|||+|+++ |+++||||||++||++..+.+.+.|+++. +|.|+|+|||+++.++.|
T Consensus 159 ~~l~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~~i~~a 238 (261)
T cd03271 159 GYIKLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDVIKCA 238 (261)
T ss_pred chhhhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhC
Confidence 33 36788889999999999999999996 79999999999999999999999998875 589999999999999899
Q ss_pred CEEEEE------ECCEEEEecCh
Q 001438 586 DVIAVV------QGRKIVKTGSH 602 (1077)
Q Consensus 586 d~i~~l------~~G~i~~~g~~ 602 (1077)
|++++| ++|+|+++|++
T Consensus 239 D~ii~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 239 DWIIDLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred CEEEEecCCcCCCCCEEEEeCCC
Confidence 999999 89999999974
No 403
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.95 E-value=1.1e-24 Score=240.79 Aligned_cols=364 Identities=16% Similarity=0.153 Sum_probs=288.4
Q ss_pred HHHHHHhhHHhHHHHHHHHHHHhhccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 703 ICAIIAGAQMPLFALGVSQALVAYYMDWDTTQREVKKITILFCCAAVITVIVHAIEHLSFGIMGERLTLRVREKMFSAIL 782 (1077)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~Lr~~l~~~ll 782 (1077)
.++.+.-+.+...++.+-++.|......+ ....-...++.+++.++.+++-.+|...+.+++++.-..|+.+.|...+
T Consensus 30 lfS~~INiL~L~~~lyMLQVyDRVL~S~s--~~TLv~Ltvlal~ly~~~glLd~iR~~~l~Rig~~lD~~L~~~v~~a~~ 107 (580)
T COG4618 30 LFSAVINLLALTGPLYMLQVYDRVLPSRS--VPTLVMLTVLALGLYAFQGLLDAIRSRVLVRIGERLDRQLNGPVFAASF 107 (580)
T ss_pred HHHHHHHHHHHhhhHHHHHHHhhhccCCC--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 33444444455556666677765544221 1222233344556666778888999999999999999999999999998
Q ss_pred cCCccccccccCCchhHHHHHhhcHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 783 SNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQNFGLVTASFVIAFILNWRITLVVVATYPLIISGHISEKL 862 (1077)
Q Consensus 783 r~p~~FFD~~~~~~G~IlnR~s~D~~~i~~~l~~~l~~~~~~~~~~~~~i~i~~~~~w~l~l~~l~~~Pl~i~~~~~~~~ 862 (1077)
++|..--- .|+=. ---+|.++++.++...-...+...-..=.-+.++|.++|++.+..++...+++...++..+
T Consensus 108 ~~~l~~~~-----~g~~~-Q~LrDL~qvR~Fltg~g~~A~fDaPW~P~yl~v~fl~Hp~lG~~a~~ga~iLv~la~ln~~ 181 (580)
T COG4618 108 SAPLLRRG-----SGDGL-QPLRDLDQVRQFLTGTGLTAFFDAPWMPLYLAVIFLFHPWLGLIALAGAIILVVLALLNER 181 (580)
T ss_pred hhHHhhcC-----CCccc-cchhhHHHHHHHHcCCCcchhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77665432 22111 1236999999999886555544443444456667778888888888888777777788777
Q ss_pred HHHhhhhhHHHHHHHHhHHHHHHHcchHHHHHhcchHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 863 FFQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRSFIRGQIAGIFYGISQFFIFSSYGLAL 942 (1077)
Q Consensus 863 ~~~~~~~~~~~~~~~~~~~~~Etl~Gi~tIrAf~~e~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 942 (1077)
..++-..+.++...+.+..++-+..|..+|+|+|+.....+++.+....+.....+..-..+.+.+++-.+-......++
T Consensus 182 ~t~~p~~eA~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l~~rW~~~~~~~L~~~~~asd~~~~~~~~Sr~~Rm~lQs~iL 261 (580)
T COG4618 182 ATRKPLKEASEASIRANQLADATLRNAEVIEAMGMLGNLAKRWGRFNAAYLSAQERASDRNGAFGALSRALRMALQSAVL 261 (580)
T ss_pred HhhccHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777788888888999999999999999999999999998888877777777777788888888888889999999
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHcCCCCccCCCCcccccccccEEEee
Q 001438 943 WYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLALVPDLLKGNQMAASVFEVLDRKTQVIGDIGEELTNVEGTIELRG 1022 (1077)
Q Consensus 943 ~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~G~I~f~n 1022 (1077)
-.|++++..+++|.|.+++....+.....|+-........+..+..+-.|+.+++...|+..+. -+.|..+|.+..++
T Consensus 262 g~GA~Lvi~ge~t~G~mIA~SIl~gRaLaPid~aI~~Wkq~~~Ar~s~~Rl~~lL~~~p~~~~~--m~LP~P~g~L~Ve~ 339 (580)
T COG4618 262 GLGAWLVIKGEITPGMMIAGSILSGRALAPIDLAIANWKQFVAARQSYKRLNELLAELPAAAER--MPLPAPQGALSVER 339 (580)
T ss_pred hcceeeEEcCcCCcchhhHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccCC--CCCCCCCceeeEee
Confidence 9999999999999999998888888888899999999999999999999999999876654432 34456689999999
Q ss_pred eeeeCCCCCcccccccceeeeeCCCEEEEECCCCCCHHHHHHHHhhccCCCCCCC
Q 001438 1023 VHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKA 1077 (1077)
Q Consensus 1023 Vsf~Y~~~~~~~VLk~vsl~I~~GekVaIVGrTGsGKSTLi~lL~Rfyd~~~G~i 1077 (1077)
+++.=|+. ..|+|+|+||+++|||-+|||||||||||||..+|.+.+.|.+|.|
T Consensus 340 l~~~PPg~-~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~V 393 (580)
T COG4618 340 LTAAPPGQ-KKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSV 393 (580)
T ss_pred eeecCCCC-CCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcE
Confidence 99965544 5789999999999999999999999999999999999999999986
No 404
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.95 E-value=1.3e-27 Score=249.16 Aligned_cols=164 Identities=24% Similarity=0.338 Sum_probs=130.2
Q ss_pred cceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCc---------cEEEECCeeCCCCCHHHHhhheeEEccCCCccc
Q 001438 401 DKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLS---------GEILLDGNNIKGLDLKWLRQQIGLVNQEPALFA 471 (1077)
Q Consensus 401 ~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~---------G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~ 471 (1077)
+++++++++| +++|+||||||||||+++|.|+.+|.. |++.++|+++... ..+++++|++|+|..+
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~vfq~~~~~- 88 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKP---ANFAEVTLTFDNSDGR- 88 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCC---CceEEEEEEEEcCCCc-
Confidence 6789999999 999999999999999999999986653 4677777766432 2356899999999877
Q ss_pred ccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhc----cCCCEEEEeCc
Q 001438 472 TTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIV----KNPSILLLDEA 547 (1077)
Q Consensus 472 ~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~----~~p~illlDEp 547 (1077)
|+.. ..+++.+++ +. ++. ......+||||||||++|||+++ .+|++++||||
T Consensus 89 --------~~~~--~~~~~~~~l---------~~-~~~----~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP 144 (197)
T cd03278 89 --------YSII--SQGDVSEII---------EA-PGK----KVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEV 144 (197)
T ss_pred --------eeEE--ehhhHHHHH---------hC-CCc----cccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCC
Confidence 2211 112222222 11 211 23455689999999999999986 56799999999
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhhcCEEEEEEC
Q 001438 548 TSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQG 593 (1077)
Q Consensus 548 ts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~~d~i~~l~~ 593 (1077)
|++||+.....+.+.|+++.++.|+|+|||+++.+..||+++.+..
T Consensus 145 ~~~LD~~~~~~l~~~l~~~~~~~tiIiitH~~~~~~~~d~v~~~~~ 190 (197)
T cd03278 145 DAALDDANVERFARLLKEFSKETQFIVITHRKGTMEAADRLYGVTM 190 (197)
T ss_pred cccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHhhcceEEEEEe
Confidence 9999999999999999988778999999999999888999998864
No 405
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.95 E-value=3e-27 Score=297.73 Aligned_cols=220 Identities=25% Similarity=0.423 Sum_probs=182.9
Q ss_pred ccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCC-CHHHHhh
Q 001438 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGL-DLKWLRQ 458 (1077)
Q Consensus 380 ~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~-~~~~~r~ 458 (1077)
..+..+|+++.|+...+ +.+++|+.|++||+.|+.|+|||||||++++|.|..+|++|+++++|.+++.- +....++
T Consensus 563 ~~~~~~~L~k~y~~~~~--Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~ 640 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGKDG--AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRK 640 (885)
T ss_pred ceEEEcceeeeecchhh--hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhh
Confidence 46889999999986532 88999999999999999999999999999999999999999999999999754 4556899
Q ss_pred heeEEccCCCcccc-cHHHHHhcCC--CCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHh
Q 001438 459 QIGLVNQEPALFAT-TIRENILYGK--DDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAI 535 (1077)
Q Consensus 459 ~i~~v~Q~~~lf~~-ti~~ni~~~~--~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal 535 (1077)
++||+||+..+++. |.||.+.+-. ......++.++++. +.+-+. |-+..++. ..++|||+|+|+++|-|+
T Consensus 641 ~iGyCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~--ll~~~~-L~~~~~~~----~~~ySgG~kRkLs~aial 713 (885)
T KOG0059|consen 641 QLGYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEK--LLRLVG-LGPYANKQ----VRTYSGGNKRRLSFAIAL 713 (885)
T ss_pred hcccCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHH--HHHHcC-Chhhhccc----hhhCCCcchhhHHHHHHH
Confidence 99999999999876 9999997643 22222233222111 112121 22223333 458999999999999999
Q ss_pred ccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhHHhcC
Q 001438 536 VKNPSILLLDEATSALDAESENSVQEALDRVMV-GRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISN 608 (1077)
Q Consensus 536 ~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~-~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 608 (1077)
+.+|++++|||||+|+||.+++.+.+.+.+.++ ++.+|+.||.++..+. |||+.+|.+|++...|++++|-++
T Consensus 714 ig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMeE~EaLCtR~aImv~G~l~ciGs~q~LKsr 788 (885)
T KOG0059|consen 714 IGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSMEEAEALCTRTAIMVIGQLRCIGSPQELKSR 788 (885)
T ss_pred hcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHHhhhhheeecCeeEEecChHHHHhh
Confidence 999999999999999999999999999999876 4599999999999987 999999999999999999999654
No 406
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.94 E-value=8.5e-24 Score=225.57 Aligned_cols=328 Identities=19% Similarity=0.214 Sum_probs=236.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccccCCchhHHHHHhhcHHHHHHHHHhhHHH
Q 001438 741 TILFCCAAVITVIVHAIEHLSFGIMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTI 820 (1077)
Q Consensus 741 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~Lr~~l~~~llr~p~~FFD~~~~~~G~IlnR~s~D~~~i~~~l~~~l~~ 820 (1077)
...|.++.....+...........+|++...++|.+..++++..|+.-|++ -++++|+.++++|+..+. .-...+..
T Consensus 51 l~~f~~llllf~~ss~is~lg~t~~gq~~I~klr~~~~~kil~tplerier--~~~~rlla~L~~Dvr~IS-f~~s~lp~ 127 (546)
T COG4615 51 LPEFLGLLLLFMVSSLISQLGLTTLGQHFIYKLRSEFIKKILDTPLERIER--LGSARLLAGLTSDVRNIS-FAFSRLPE 127 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH--hcccchhhhhccccccee-ehHhhhHH
Confidence 334555555556666677778889999999999999999999999999996 889999999999999998 44467788
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHcchHHHHHhcc--h
Q 001438 821 LIQNFGLVTASFVIAFILNWRITLVVVATYPLIISGHISEKLFFQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCS--E 898 (1077)
Q Consensus 821 ~~~~~~~~~~~i~i~~~~~w~l~l~~l~~~Pl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Etl~Gi~tIrAf~~--e 898 (1077)
+.+..+..+++++-.++++++..+++.+.+.+.++..++.+.+.-+......+...++....+-.++|-+-.+-.+. +
T Consensus 128 ~~qa~il~l~s~aYLayLSp~mf~l~vV~ivv~~~~~~~~m~rv~k~~~aare~ed~Lq~~y~~il~G~KEL~l~r~R~~ 207 (546)
T COG4615 128 LVQAIILTLGSAAYLAYLSPKMFLLTVVWIVVTIWGGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNRERAE 207 (546)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchhhheechHHHH
Confidence 89999999999999999999988888877777777766666555555555555666666777778888886655432 2
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHh
Q 001438 899 DKVLELYSRELVEPSKRSFIRGQIAGIFYGISQFFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLA 978 (1077)
Q Consensus 899 ~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 978 (1077)
..+-++|........+...+.........-..+.+.+...++++|....... .+......+.+.+++...|+.+...
T Consensus 208 ~~h~~~~~~~a~~~r~~~~~~n~f~~la~~~~ni~l~~lIGlvf~lal~~~w---~st~~a~tivlvlLflr~pL~s~vg 284 (546)
T COG4615 208 YVHNNLYIPDAQEYRHHIIRANTFHLLAVNWSNIMLLGLIGLVFWLALSLGW---ASTNVAATIVLVLLFLRTPLLSAVG 284 (546)
T ss_pred HHHhhhcCcchHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc---chhhHHHHHHHHHHHHhhHHHHHHh
Confidence 2222222222111111111111111122345666777778888887655422 2222344455667778889999999
Q ss_pred hhhhHHHHHHHHHHHHHHHcCCCCccCCCCcccccccccEEEeeeeeeCCCCCcccccccceeeeeCCCEEEEECCCCCC
Q 001438 979 LVPDLLKGNQMAASVFEVLDRKTQVIGDIGEELTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSG 1058 (1077)
Q Consensus 979 ~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~~~~~VLk~vsl~I~~GekVaIVGrTGsG 1058 (1077)
.+|.+..+..|..++.++-..++..+-..+.+.|..+ .||++||.|+|++.. -=+.-||++|+.||.|=|+|..|||
T Consensus 285 ilP~l~~AqvA~~kiakle~~~~~a~~~~~q~~p~~~-~lelrnvrfay~~~~--FhvgPiNl~ikrGelvFliG~NGsG 361 (546)
T COG4615 285 ILPTLLTAQVAFNKIAKLELAPYKADFPRPQAFPDWK-TLELRNVRFAYQDNA--FHVGPINLTIKRGELVFLIGGNGSG 361 (546)
T ss_pred hhhHHHHHHHHHHHHHHhhcCCccccCCCCCcCCccc-ceeeeeeeeccCccc--ceecceeeEEecCcEEEEECCCCCc
Confidence 9999999999999998875433222111222222333 599999999997542 2378899999999999999999999
Q ss_pred HHHHHHHHhhccCCCCCCC
Q 001438 1059 KSTVLSLILRFYDPTAGKA 1077 (1077)
Q Consensus 1059 KSTLi~lL~Rfyd~~~G~i 1077 (1077)
|||++.+|.++|.|++|+|
T Consensus 362 KST~~~LLtGL~~PqsG~I 380 (546)
T COG4615 362 KSTLAMLLTGLYQPQSGEI 380 (546)
T ss_pred HHHHHHHHhcccCCCCCce
Confidence 9999999999999999986
No 407
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.93 E-value=6.7e-27 Score=222.65 Aligned_cols=208 Identities=26% Similarity=0.437 Sum_probs=172.0
Q ss_pred EEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhee
Q 001438 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (1077)
Q Consensus 382 i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 461 (1077)
+.++||+..- -|-.+|.++..||.+-+|||||||||||+..++|+. |-+|+|.++|.++..++..++.++=+
T Consensus 4 ~qln~v~~~t-------RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~-~~sGsi~~~G~~l~~~~~~eLArhRA 75 (248)
T COG4138 4 MQLNDVAEST-------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAWSATELARHRA 75 (248)
T ss_pred eeeccccccc-------cccccccccccceEEEEECCCCccHHHHHHHHhCCC-CCCceEEECCcchhHHhHhHHHHHHH
Confidence 4566666431 256789999999999999999999999999999976 56899999999999999999999999
Q ss_pred EEccCC-CcccccHHHHHhcCCCCCCH-HHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhcc--
Q 001438 462 LVNQEP-ALFATTIRENILYGKDDATM-EEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVK-- 537 (1077)
Q Consensus 462 ~v~Q~~-~lf~~ti~~ni~~~~~~~~~-~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~-- 537 (1077)
|..|+. ..|...|...+.+..|+... .++...|.+. +++..++....+|||||-||+-+|-..++
T Consensus 76 YLsQqq~p~f~mpV~~YL~L~qP~~~~a~~i~~i~~~L-----------~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~ 144 (248)
T COG4138 76 YLSQQQTPPFAMPVWHYLTLHQPDKTRTELLNDVAGAL-----------ALDDKLGRSTNQLSGGEWQRVRLAAVVLQIT 144 (248)
T ss_pred HHhhccCCcchhhhhhhhhhcCchHHHHHHHHHHHhhh-----------cccchhhhhhhhcCcccceeeEEeEEEEEec
Confidence 998874 56888999999887765211 1222222221 34455666778999999999999988876
Q ss_pred ---CC--CEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCch-hHhhcCEEEEEECCEEEEecChhHHhcC
Q 001438 538 ---NP--SILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLS-TIRNADVIAVVQGRKIVKTGSHEELISN 608 (1077)
Q Consensus 538 ---~p--~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~-~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 608 (1077)
|| ++||+|||.++||...+..+...|.++. .|.++||..|+++ +++.||++..++.|++...|..+|.+..
T Consensus 145 Pd~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~~G~~vims~HDLNhTLrhA~~~wLL~rG~l~~~G~~~eVlt~ 222 (248)
T COG4138 145 PDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKRGKLLASGRREEVLTP 222 (248)
T ss_pred CCCCccceeEEecCCCcchhHHHHHHHHHHHHHHHhCCcEEEEeccchhhHHHHHHHHHHHhcCeEEeecchhhhcCh
Confidence 33 7999999999999999998888887764 6999999999998 6899999999999999999999999864
No 408
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.93 E-value=2.5e-26 Score=243.78 Aligned_cols=192 Identities=19% Similarity=0.214 Sum_probs=139.7
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEec-CCcEEEEEcCCCCcHHHHHHHHhc-ccCCCccEEEECCeeCCCCCHHHHhh
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIP-AGKIVALVGGSGSGKSTVISLIER-FYEPLSGEILLDGNNIKGLDLKWLRQ 458 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~-~g~~~~ivG~~GsGKSTl~~~l~g-~~~~~~G~i~~~g~~~~~~~~~~~r~ 458 (1077)
.|+++|+. +|.++ ++++|+.. +|++++|+||||||||||+++|.+ ++.+..+....+ .....+.....+.
T Consensus 5 ~i~l~nf~-~y~~~------~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~-~~~~~~~~~~~~~ 76 (213)
T cd03279 5 KLELKNFG-PFREE------QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQE-NLRSVFAPGEDTA 76 (213)
T ss_pred EEEEECCc-CcCCc------eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccch-hHHHHhcCCCccE
Confidence 58889987 66432 46777654 589999999999999999999995 555555555443 1112223334456
Q ss_pred heeEEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCcc-chhhhhcCCCCCCChHHHHHHHHHHHhcc
Q 001438 459 QIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPE-RFETQVGERGIQLSGGQKQRIAISRAIVK 537 (1077)
Q Consensus 459 ~i~~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~-g~~t~~~~~g~~LSgGqkqri~lARal~~ 537 (1077)
.|++++|++...-...| +. ..+.++..+... ++. ++++.+...+.+||||||||++||||++.
T Consensus 77 ~v~~~f~~~~~~~~~~r----~~--gl~~~~~~~~~~----------l~~g~l~~~l~~~~~~lS~G~~~r~~la~al~~ 140 (213)
T cd03279 77 EVSFTFQLGGKKYRVER----SR--GLDYDQFTRIVL----------LPQGEFDRFLARPVSTLSGGETFLASLSLALAL 140 (213)
T ss_pred EEEEEEEECCeEEEEEE----ec--CCCHHHHHHhhh----------hhhcchHHHhcCCccccCHHHHHHHHHHHHHHh
Confidence 79999998843222111 11 223333322211 122 24566677888999999999999999974
Q ss_pred ----------CCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCeEEEEccCchhHhh-cCEEEEEECCEE
Q 001438 538 ----------NPSILLLDEATSALDAESENSVQEALDRVMV-GRTTVVVAHRLSTIRN-ADVIAVVQGRKI 596 (1077)
Q Consensus 538 ----------~p~illlDEpts~lD~~~~~~i~~~l~~~~~-~~t~i~vtH~~~~~~~-~d~i~~l~~G~i 596 (1077)
+|+++||||||++||+.+.+.+.+.++++.+ ++|+|+|||+++.+.. ||++++|++|.+
T Consensus 141 ~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~~~~~~~~~i~~~~~~~~ 211 (213)
T cd03279 141 SEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISHVEELKERIPQRLEVIKTPGG 211 (213)
T ss_pred HHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECchHHHHhhCcEEEEEecCCC
Confidence 6799999999999999999999999988764 8899999999998866 899999999853
No 409
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.93 E-value=8.6e-26 Score=245.65 Aligned_cols=190 Identities=24% Similarity=0.315 Sum_probs=130.8
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHh----------------cccCCCcc-----
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIE----------------RFYEPLSG----- 439 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~----------------g~~~~~~G----- 439 (1077)
.|+++|. ++|.+ ..++++++ |++++|+||||||||||+++|. +++.+.+|
T Consensus 3 ~i~~~nf-ksy~~---~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~ 73 (243)
T cd03272 3 QVIIQGF-KSYKD---QTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMS 73 (243)
T ss_pred EEEEeCc-cCccc---CcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCce
Confidence 3566653 23542 34677776 8899999999999999999998 44455556
Q ss_pred ---EEEECCeeCCC-C--CHHHHhhheeEEccCCCcccc--cHHHHHhcCCCCCCHHHHHHHHHHHhHHHH--HhcCccc
Q 001438 440 ---EILLDGNNIKG-L--DLKWLRQQIGLVNQEPALFAT--TIRENILYGKDDATMEEITRAAKLSEAMSF--ISNLPER 509 (1077)
Q Consensus 440 ---~i~~~g~~~~~-~--~~~~~r~~i~~v~Q~~~lf~~--ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~--i~~l~~g 509 (1077)
+|.+++.+-.. . ....+++++++++|++.+++. |..|+..+ ++..+.... ...+++|
T Consensus 74 ~~v~i~~~~~~~~~~~~~~~~~i~r~ig~~~~~~~l~~~~~t~~ei~~~-------------l~~~gl~~~~~~~~~~qg 140 (243)
T cd03272 74 AYVEIIFDNSDNRFPIDKEEVRLRRTIGLKKDEYFLDKKNVTKNDVMNL-------------LESAGFSRSNPYYIVPQG 140 (243)
T ss_pred EEEEEEEEcCCCccCCCCCEEEEEEEEECCCCEEEECCeEcCHHHHHHH-------------HHHcCCCCCCCcEEEEcC
Confidence 56665532111 1 122456678999988877653 44433221 111110000 0000011
Q ss_pred -------hhhhhcCCCCCCChHHHHHHHHHHHhc----cCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccC
Q 001438 510 -------FETQVGERGIQLSGGQKQRIAISRAIV----KNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHR 578 (1077)
Q Consensus 510 -------~~t~~~~~g~~LSgGqkqri~lARal~----~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~ 578 (1077)
+....++++.+||||||||++||||++ .+|+++||||||++||+.+.+.+.+.|+++.+++|+|++||+
T Consensus 141 ~i~~l~~l~~~~~~~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~~~~ii~~~h~ 220 (243)
T cd03272 141 KINSLTNMKQDEQQEMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSDGAQFITTTFR 220 (243)
T ss_pred chHHhhhccccccccccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEecC
Confidence 112235677899999999999999996 468999999999999999999999999988778889999999
Q ss_pred chhHhhcCEEEEEE
Q 001438 579 LSTIRNADVIAVVQ 592 (1077)
Q Consensus 579 ~~~~~~~d~i~~l~ 592 (1077)
.+..+.||++++|+
T Consensus 221 ~~~~~~~d~i~~l~ 234 (243)
T cd03272 221 PELLEVADKFYGVK 234 (243)
T ss_pred HHHHhhCCEEEEEE
Confidence 88777899999985
No 410
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.92 E-value=7.9e-25 Score=248.83 Aligned_cols=213 Identities=24% Similarity=0.368 Sum_probs=168.1
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHH-HHhhh
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLK-WLRQQ 459 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~-~~r~~ 459 (1077)
.++++|++.. ..++|+||++++||++||.|-.|||+|-++++|.|..++.+|+|.+||+++.-.++. ..+..
T Consensus 263 ~l~v~~l~~~-------~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~G 335 (500)
T COG1129 263 VLEVRNLSGG-------GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAG 335 (500)
T ss_pred EEEEecCCCC-------CceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcC
Confidence 4677877642 147899999999999999999999999999999999999999999999999877654 67888
Q ss_pred eeEEccCC---Cccc-ccHHHHHhcCC-CCCC-HHHHHHHHHHHhHHHHHhcCc---cchhhhhcCCCCCCChHHHHHHH
Q 001438 460 IGLVNQEP---ALFA-TTIRENILYGK-DDAT-MEEITRAAKLSEAMSFISNLP---ERFETQVGERGIQLSGGQKQRIA 530 (1077)
Q Consensus 460 i~~v~Q~~---~lf~-~ti~~ni~~~~-~~~~-~~~~~~~~~~~~~~~~i~~l~---~g~~t~~~~~g~~LSgGqkqri~ 530 (1077)
|+|||.|- -+|. .+|++|+.+.. .... .--+....+.....+++..|. .+.+ ....+||||.+|++.
T Consensus 336 i~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~----~~v~~LSGGNQQKVv 411 (500)
T COG1129 336 IAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPE----QPIGTLSGGNQQKVV 411 (500)
T ss_pred CEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCcc----chhhcCCchhhhhHH
Confidence 99999985 3564 59999998762 1100 001111222222223333332 2222 345589999999999
Q ss_pred HHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHh-hcCEEEEEECCEEEEecChhH
Q 001438 531 ISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIR-NADVIAVVQGRKIVKTGSHEE 604 (1077)
Q Consensus 531 lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~ 604 (1077)
|||.|..+|+||||||||-++|.-+..+|.+.|+++. +|+++|+||-.+..+- .||||+||.+|+|+.+=+.++
T Consensus 412 larwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElpEll~~~DRIlVm~~Gri~~e~~~~~ 487 (500)
T COG1129 412 LARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPELLGLSDRILVMREGRIVGELDREE 487 (500)
T ss_pred HHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChHHHHhhCCEEEEEECCEEEEEecccc
Confidence 9999999999999999999999999999999999874 6999999999999875 699999999999997554444
No 411
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.92 E-value=1.4e-23 Score=255.76 Aligned_cols=208 Identities=24% Similarity=0.393 Sum_probs=171.1
Q ss_pred cccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCC---CccEEEECCeeCCCCCHHHHhhheeEEccCCCcccc-
Q 001438 397 VAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEP---LSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFAT- 472 (1077)
Q Consensus 397 ~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~---~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~- 472 (1077)
..+|+|++.-++||+.+.+.||.|||||||+++|+|..+- ..|+|..||.+.++... ++.++|++|+..-++.
T Consensus 128 ~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~---~~~~aY~~e~DvH~p~l 204 (1391)
T KOG0065|consen 128 IQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVP---KKTVAYNSEQDVHFPEL 204 (1391)
T ss_pred ceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCccccccc---CceEEecccccccccee
Confidence 4689999999999999999999999999999999998753 35699999999988766 6789999999988876
Q ss_pred cHHHHHhcCC----CCCCHHHH---HHHHHHHhHHHHHhcCccchhhhhcCCC-CCCChHHHHHHHHHHHhccCCCEEEE
Q 001438 473 TIRENILYGK----DDATMEEI---TRAAKLSEAMSFISNLPERFETQVGERG-IQLSGGQKQRIAISRAIVKNPSILLL 544 (1077)
Q Consensus 473 ti~~ni~~~~----~~~~~~~~---~~~~~~~~~~~~i~~l~~g~~t~~~~~g-~~LSgGqkqri~lARal~~~p~illl 544 (1077)
||||-+.|.. +..+++++ +..+...+..--+-+|.+..||.||.+. ...|||||.|+++|-+++.+|+++..
T Consensus 205 TVreTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~ 284 (1391)
T KOG0065|consen 205 TVRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFW 284 (1391)
T ss_pred EEeehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeee
Confidence 9999998753 21112222 2222122222224568889999999754 46999999999999999999999999
Q ss_pred eCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEccCch--hHhhcCEEEEEECCEEEEecChhHHhc
Q 001438 545 DEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLS--TIRNADVIAVVQGRKIVKTGSHEELIS 607 (1077)
Q Consensus 545 DEpts~lD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~--~~~~~d~i~~l~~G~i~~~g~~~~l~~ 607 (1077)
||+|.|||..|.-++.++|++.. -+.|.++.=|+.+ .....|+|++|.+|+++.+|+.++.+.
T Consensus 285 De~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~ 351 (1391)
T KOG0065|consen 285 DEITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLP 351 (1391)
T ss_pred ecccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHH
Confidence 99999999999999999999874 3788888888875 456799999999999999999998763
No 412
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.92 E-value=5.8e-25 Score=230.77 Aligned_cols=164 Identities=25% Similarity=0.305 Sum_probs=128.2
Q ss_pred eeEEecCCcEEEEEcCCCCcHHHHHHHHh----cccCCCccEEEECCeeCCCCCHHHHhhheeEEccCC-----Ccccc-
Q 001438 403 FCLDIPAGKIVALVGGSGSGKSTVISLIE----RFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEP-----ALFAT- 472 (1077)
Q Consensus 403 isl~i~~g~~~~ivG~~GsGKSTl~~~l~----g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~-----~lf~~- 472 (1077)
.++++.+| +++|+||||||||||+.+|. |...|.+|.+..+...+.. ...+..|++++|++ .+...
T Consensus 16 ~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~---~~~~~~v~~~f~~~~~~~~~v~r~~ 91 (204)
T cd03240 16 SEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIRE---GEVRAQVKLAFENANGKKYTITRSL 91 (204)
T ss_pred eEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhC---CCCcEEEEEEEEeCCCCEEEEEEEh
Confidence 34566677 99999999999999999994 9888888877622222221 23355799999998 33433
Q ss_pred cHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHH------HHHHHHhccCCCEEEEeC
Q 001438 473 TIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQR------IAISRAIVKNPSILLLDE 546 (1077)
Q Consensus 473 ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqr------i~lARal~~~p~illlDE 546 (1077)
|+.||+.++. .+++. + .+.+...+||+||||| ++||||++.+|++++|||
T Consensus 92 ~~~~~~~~~~----~~~~~---------~-----------~~~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDE 147 (204)
T cd03240 92 AILENVIFCH----QGESN---------W-----------PLLDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDE 147 (204)
T ss_pred hHhhceeeec----hHHHH---------H-----------HHhcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcC
Confidence 9999997752 11111 1 1144567899999996 799999999999999999
Q ss_pred cCCCCCHHHHH-HHHHHHHHHhC--CCeEEEEccCchhHhhcCEEEEEECC
Q 001438 547 ATSALDAESEN-SVQEALDRVMV--GRTTVVVAHRLSTIRNADVIAVVQGR 594 (1077)
Q Consensus 547 pts~lD~~~~~-~i~~~l~~~~~--~~t~i~vtH~~~~~~~~d~i~~l~~G 594 (1077)
||++||+.... .+.+.|+++.+ ++|+|++||+++.+..||++++|++.
T Consensus 148 P~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~~~d~i~~l~~~ 198 (204)
T cd03240 148 PTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDAADHIYRVEKD 198 (204)
T ss_pred CccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHhhCCEEEEEeeC
Confidence 99999999999 99999988764 78999999999988889999999653
No 413
>PF00664 ABC_membrane: ABC transporter transmembrane region; InterPro: IPR001140 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A variety of ATP-binding transport proteins have a six transmembrane helical region. They are all integral membrane proteins involved in a variety of transport systems. Members of this family include; the cystic fibrosis transmembrane conductance regulator (CFTR), bacterial leukotoxin secretion ATP-binding protein, multidrug resistance proteins, the yeast leptomycin B resistance protein, the mammalian sulphonylurea receptor and antigen peptide transporter 2. Many of these proteins have two such regions.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3G61_B 3G5U_B 3G60_A 3B60_D 3QF4_B 2HYD_A 2ONJ_A 4A82_B 4AA3_A 2YL4_A.
Probab=99.91 E-value=3e-21 Score=212.64 Aligned_cols=271 Identities=19% Similarity=0.257 Sum_probs=221.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhcccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 60 LGSIGACVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSSWIEVSCWMYTGERQAAKMRMA 139 (1077)
Q Consensus 60 ~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~ 139 (1077)
+++++.++.++..+..+++++.++|.+.... .. ...........++++.++...+.....+...+.+.++..++|.+
T Consensus 3 l~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 79 (275)
T PF00664_consen 3 LAILLSILSGLLSLLFPLLLGQIIDSLSSGN-SD--NNSSLISLAFLLIAIFLLIFLFSYIYFYLSSRISQRIRKDLRKR 79 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCTTTT-SC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-cc--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555566666667778899999743221 11 11111222222222333333444444444567889999999999
Q ss_pred HHHHHHhCCchhhccCCChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 140 YLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFARVWQISLVTLSIVPLIALAG 219 (1077)
Q Consensus 140 ~~~~ll~~~~~~f~~~~~~G~i~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~pl~~~~~ 219 (1077)
+++++++.|.++|++ .++|++++|+++|++.+++.+...+..++..+..+++.+++++.++|.++++.+++.|+..++.
T Consensus 80 ~~~~~~~~~~~~~~~-~~~g~l~~~i~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~l~~l~~~~~~~~~~ 158 (275)
T PF00664_consen 80 LFEKLLRLPYSYFDK-NSSGELLSRITNDIEQIENFLSSSLFQIISSIISIIFSLILLFFISWKLALILLIILPLLFLIS 158 (275)
T ss_dssp HHHHHHHSHHHHHHH-S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhhhh-hcccccccccccccccccccccccccccccccchhhhhhhcccccccccccccchhhhhhHhhh
Confidence 999999999999998 4999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 220 GMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGRKAGLAKGLGLGSMHCVLFLS 299 (1077)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (1077)
..+.++.++..++.++..++..+.+.|.++|+++||+|++|+.+.+++++..++..+...+.....+...+...++..+.
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (275)
T PF00664_consen 159 FIFSKKIRKLSKKYQEANSELNSFLSESLSGIRTIKAFGAEDYFLERFNKALEKYRKASFKYAKIQALLSSISQFISYLS 238 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhccccccccccccccccccccccccchhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999888888888888
Q ss_pred HHHHHHHHHHH-HHhcccCHHHHHHHHHHHHHHHHH
Q 001438 300 WSLLVWYVSVV-VHKHISNGGESFTTMLNVVIAGLS 334 (1077)
Q Consensus 300 ~~~~~~~g~~~-v~~~~~~~g~~~~~~~~~~~~~~~ 334 (1077)
.++++++|+++ +..|.+++|.+++++.+......|
T Consensus 239 ~~~~~~~g~~~~~~~g~~s~g~~~~~~~~~~~~~~p 274 (275)
T PF00664_consen 239 IVLILIFGAYLSVINGQISIGTLVAFLSLSSQLINP 274 (275)
T ss_dssp HHHHHHHHHHH-HCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHhh
Confidence 89999999999 999999999998877666555444
No 414
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.91 E-value=3.5e-25 Score=233.41 Aligned_cols=185 Identities=18% Similarity=0.223 Sum_probs=133.9
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHh-hh
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLR-QQ 459 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r-~~ 459 (1077)
.|+++|.. +|.+ ..+++++++ ++++|+|||||||||++++|. +++|.+. ...| ++
T Consensus 5 ~l~l~nfk-~~~~---~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~----------~~~G~~~-----~~~~~~~ 60 (212)
T cd03274 5 KLVLENFK-SYAG---EQVIGPFHK-----SFSAIVGPNGSGKSNVIDSML----------FVFGFRA-----SKMRQKK 60 (212)
T ss_pred EEEEECcc-cCCC---CeeeccCCC-----CeEEEECCCCCCHHHHHHHHH----------HHhccCH-----HHhhhhh
Confidence 47777765 6753 358888887 899999999999999999997 2344332 1233 57
Q ss_pred eeEEccCCCcccc-cHHHHHhcCCCCCCHHHH-----HHHH-H---HHhHHHHHhcCccchhhhhcCCCCCCChHHHHHH
Q 001438 460 IGLVNQEPALFAT-TIRENILYGKDDATMEEI-----TRAA-K---LSEAMSFISNLPERFETQVGERGIQLSGGQKQRI 529 (1077)
Q Consensus 460 i~~v~Q~~~lf~~-ti~~ni~~~~~~~~~~~~-----~~~~-~---~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri 529 (1077)
+++++|+..+++. |.++++.+.......+.. .... . ..+....+..+|++.++. ...||+|||||+
T Consensus 61 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~----~~~lS~G~~~r~ 136 (212)
T cd03274 61 LSDLIHNSAGHPNLDSCSVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKN----ISNLSGGEKTLS 136 (212)
T ss_pred HHHHhcCCCCCCCCceEEEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeeccccccccc----hhhcCHHHHHHH
Confidence 9999999877665 777766543321111100 0000 0 001111233466666554 447999999999
Q ss_pred HHHHHhcc----CCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhhcCEEEEEEC
Q 001438 530 AISRAIVK----NPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQG 593 (1077)
Q Consensus 530 ~lARal~~----~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~~d~i~~l~~ 593 (1077)
+||||++. +|++++|||||++||+.+...+.+.++++.++.|+|++||+.+..+.||++++|..
T Consensus 137 ~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~~~~~~iivs~~~~~~~~~d~v~~~~~ 204 (212)
T cd03274 137 SLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERTKNAQFIVISLRNNMFELADRLVGIYK 204 (212)
T ss_pred HHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECcHHHHHhCCEEEEEEe
Confidence 99999963 58999999999999999999999999998778899999999877788999999964
No 415
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.91 E-value=1.3e-24 Score=236.77 Aligned_cols=177 Identities=19% Similarity=0.245 Sum_probs=130.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcccCCC-ccEEEECCe-eCCCCC-H-HHHhhheeEEccCCC---------cc-cccHH
Q 001438 410 GKIVALVGGSGSGKSTVISLIERFYEPL-SGEILLDGN-NIKGLD-L-KWLRQQIGLVNQEPA---------LF-ATTIR 475 (1077)
Q Consensus 410 g~~~~ivG~~GsGKSTl~~~l~g~~~~~-~G~i~~~g~-~~~~~~-~-~~~r~~i~~v~Q~~~---------lf-~~ti~ 475 (1077)
..+++||||||||||||+++|.+++.+. .|++...|. ++-... . ...+.++++++|++. +. .-||.
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV~ 104 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITVT 104 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEEE
Confidence 5699999999999999999999999886 468888776 432111 1 122347999999962 22 34888
Q ss_pred HHHhcCCCC--------CCHHHHHHHHHHHhHHHHHhcCccchh---------------hhhcCCCCCCChHHHHHHHHH
Q 001438 476 ENILYGKDD--------ATMEEITRAAKLSEAMSFISNLPERFE---------------TQVGERGIQLSGGQKQRIAIS 532 (1077)
Q Consensus 476 ~ni~~~~~~--------~~~~~~~~~~~~~~~~~~i~~l~~g~~---------------t~~~~~g~~LSgGqkqri~lA 532 (1077)
+|+..+... ...+++.+.++..++. ++... ........+||||||||++||
T Consensus 105 r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~------~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la 178 (251)
T cd03273 105 RQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLN------VNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALS 178 (251)
T ss_pred EEEEcCCceEEEECCEEeeHHHHHHHHHHcCCC------CCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHH
Confidence 887655321 1123333333322210 00111 234567789999999999999
Q ss_pred HHhc----cCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhhcCEEEEEE
Q 001438 533 RAIV----KNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQ 592 (1077)
Q Consensus 533 Ral~----~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~~d~i~~l~ 592 (1077)
||++ .+|+++||||||++||+.+.+.+.+.|+++.+|.|+|+|||+.+.++.||+++-+.
T Consensus 179 ~al~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~~g~~ii~iSH~~~~~~~~d~v~~~~ 242 (251)
T cd03273 179 LILALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHFKGSQFIVVSLKEGMFNNANVLFRTR 242 (251)
T ss_pred HHHHHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEEE
Confidence 9997 58899999999999999999999999998877899999999988888899998764
No 416
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.91 E-value=1.4e-24 Score=264.60 Aligned_cols=199 Identities=28% Similarity=0.422 Sum_probs=165.6
Q ss_pred CcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccC--CCccEEEECCeeCCCCCHHHHhhheeEEccCC-Ccccc
Q 001438 396 DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYE--PLSGEILLDGNNIKGLDLKWLRQQIGLVNQEP-ALFAT 472 (1077)
Q Consensus 396 ~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~--~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~-~lf~~ 472 (1077)
.+.+|+||+=-++||.++|++|+||||||||+++|+|=.. ..+|+|.+||.+..+ +..++.+|||.|++ ++-.-
T Consensus 803 ~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q---~tF~R~~GYvqQ~DiH~~~~ 879 (1391)
T KOG0065|consen 803 TRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQ---ETFARVSGYVEQQDIHSPEL 879 (1391)
T ss_pred ceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCch---hhhccccceeecccccCccc
Confidence 4578999999999999999999999999999999998543 467999999998764 67888999999987 45455
Q ss_pred cHHHHHhcCC----C-CCCHHH----HHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccCC-CEE
Q 001438 473 TIRENILYGK----D-DATMEE----ITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNP-SIL 542 (1077)
Q Consensus 473 ti~~ni~~~~----~-~~~~~~----~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~p-~il 542 (1077)
||||-+.|.. | +.+.++ ++++.++. +|++--|..||..|..||..||+|+.||=-|+.|| .||
T Consensus 880 TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~ll-------eL~~~~daiVG~~G~GLs~eQRKrLTIgVELvA~P~~il 952 (1391)
T KOG0065|consen 880 TVRESLRFSAALRLPKEVSDEEKYEYVEEVIELL-------ELKEYADALVGLPGSGLSTEQRKRLTIGVELVANPSSIL 952 (1391)
T ss_pred chHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHh-------CchhhhhhhccCCCCCCCHHHhceeeEEEEEecCCceeE
Confidence 9999998863 1 222222 22222222 34555678899999999999999999999999999 899
Q ss_pred EEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchh--HhhcCEEEEEE-CCEEEEecChhH
Q 001438 543 LLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLST--IRNADVIAVVQ-GRKIVKTGSHEE 604 (1077)
Q Consensus 543 llDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~--~~~~d~i~~l~-~G~i~~~g~~~~ 604 (1077)
+|||||||||+++...|.+.++++. .|+||++.-|+++. .+..|+++.|+ +|+.+..|+..+
T Consensus 953 FLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~ 1018 (1391)
T KOG0065|consen 953 FLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGE 1018 (1391)
T ss_pred EecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCccc
Confidence 9999999999999999999999974 79999999999984 47899999996 568999998655
No 417
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.91 E-value=1.8e-24 Score=240.34 Aligned_cols=194 Identities=30% Similarity=0.394 Sum_probs=154.0
Q ss_pred ccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhh
Q 001438 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQ 459 (1077)
Q Consensus 380 ~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~ 459 (1077)
..|.++||+|.|++++ .++++++|-|..++.+++|||||+|||||++++.|.+.|..|.|.-.-.. +
T Consensus 388 pvi~~~nv~F~y~~~~--~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~-----------~ 454 (614)
T KOG0927|consen 388 PVIMVQNVSFGYSDNP--MIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHN-----------K 454 (614)
T ss_pred CeEEEeccccCCCCcc--hhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccccccccccccc-----------c
Confidence 4689999999998654 68999999999999999999999999999999999999999998654321 3
Q ss_pred eeEEccCC---CcccccHHHHHhcCCCC-CCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHh
Q 001438 460 IGLVNQEP---ALFATTIRENILYGKDD-ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAI 535 (1077)
Q Consensus 460 i~~v~Q~~---~lf~~ti~~ni~~~~~~-~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal 535 (1077)
+++-.|.- ..++.+.-|++.--.++ .+.+++.......++....+ +. .-.+||+|||.||+.||.+
T Consensus 455 ~~~y~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q------~~----p~~~LS~Gqr~rVlFa~l~ 524 (614)
T KOG0927|consen 455 LPRYNQHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQ------VV----PMSQLSDGQRRRVLFARLA 524 (614)
T ss_pred chhhhhhhHhhcCcchhHHHHHHHhccccchHHHHHHHHHHhCCCcccc------cc----chhhcccccchhHHHHHHH
Confidence 55555543 23566778887633333 34444444444443321111 11 2358999999999999999
Q ss_pred ccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhh-cCEEEEEECCEEEE
Q 001438 536 VKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVK 598 (1077)
Q Consensus 536 ~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~ 598 (1077)
++.|.||+|||||++||.++...+.++|.++ .-++|+|||+.-.+.+ |++|.+.+||.+..
T Consensus 525 ~kqP~lLlLDEPtnhLDi~tid~laeaiNe~--~Ggvv~vSHDfrlI~qVaeEi~~c~~~~~~~ 586 (614)
T KOG0927|consen 525 VKQPHLLLLDEPTNHLDIETIDALAEAINEF--PGGVVLVSHDFRLISQVAEEIWVCENGTVTK 586 (614)
T ss_pred hcCCcEEEecCCCcCCCchhHHHHHHHHhcc--CCceeeeechhhHHHHHHHHhHhhccCceee
Confidence 9999999999999999999999999999876 3479999999999977 99999999998764
No 418
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.90 E-value=4e-23 Score=265.76 Aligned_cols=212 Identities=23% Similarity=0.369 Sum_probs=152.7
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHH---------HHhcccCCCc----c----EEEE
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVIS---------LIERFYEPLS----G----EILL 443 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~---------~l~g~~~~~~----G----~i~~ 443 (1077)
.++++|++. ..|+|+||+|++||+++|.|+||||||||++ .|.|...+.. + -|.|
T Consensus 600 ~L~l~~~~~--------~~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~~~L~~~l~~~l~~~~~~~~~i~g~~i~~vi~i 671 (1809)
T PRK00635 600 TLTLSKATK--------HNLKDLTISLPLGRLTVVTGVSGSGKSSLINDTLVPAVEEFIEQGFCSNLSIQWGAISRLVHI 671 (1809)
T ss_pred eEEEecccc--------CCccceEEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCCcccccccccccceeEEe
Confidence 578888752 2589999999999999999999999999999 5555432211 1 2345
Q ss_pred CCeeCCCCC----H------HHHh---------hhe-----eEEccC------------------C--------------
Q 001438 444 DGNNIKGLD----L------KWLR---------QQI-----GLVNQE------------------P-------------- 467 (1077)
Q Consensus 444 ~g~~~~~~~----~------~~~r---------~~i-----~~v~Q~------------------~-------------- 467 (1077)
|-.++.... . +++| ++. .+.+|. |
T Consensus 672 dQspigr~~rS~~atY~g~fd~IR~lFA~~~~ak~~g~~~~~fsfn~~gG~C~~c~g~g~i~v~m~~~~v~c~~C~GkRy 751 (1809)
T PRK00635 672 TRDLPGRSQRSIPLTYIKAFDDLRELFAEQPRSKRLGLTKSHFSFNTPLGACAECQGLGSITTTDNRTSIPCPSCLGKRF 751 (1809)
T ss_pred cCCCCCCCCCCCceeehhhhHHHHHHHhhChHHHHcCCCcceeeecCCCCCCCcceeeEEEEEecCCceEECCccCCccc
Confidence 544443211 1 1333 111 122331 1
Q ss_pred ------Ccccc-cHHHHHhcCCCCC-----CHHHHHHHHHHHhHHHHHhcCccchhhh-hcCCCCCCChHHHHHHHHHHH
Q 001438 468 ------ALFAT-TIRENILYGKDDA-----TMEEITRAAKLSEAMSFISNLPERFETQ-VGERGIQLSGGQKQRIAISRA 534 (1077)
Q Consensus 468 ------~lf~~-ti~~ni~~~~~~~-----~~~~~~~~~~~~~~~~~i~~l~~g~~t~-~~~~g~~LSgGqkqri~lARa 534 (1077)
..+.+ ||.||+.++..+. ..+++.+.++ . ++.+ |++.. .++...+||||||||++||||
T Consensus 752 ~~e~L~~~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l~---~---L~~v--GL~~l~l~q~~~tLSGGE~QRV~LAra 823 (1809)
T PRK00635 752 LPQVLEVRYKGKNIADILEMTAYEAEKFFLDEPSIHEKIH---A---LCSL--GLDYLPLGRPLSSLSGGEIQRLKLAYE 823 (1809)
T ss_pred CHHHHhhccCCCCHHHHHHcCHHHHHHcccChHHHHHHHH---H---HHHc--CCcchhhcCccccCCHHHHHHHHHHHH
Confidence 13344 8899998864311 1222222221 2 2222 45443 577888999999999999999
Q ss_pred hc---cCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHhhcCEEEEEE------CCEEEEecChhH
Q 001438 535 IV---KNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRNADVIAVVQ------GRKIVKTGSHEE 604 (1077)
Q Consensus 535 l~---~~p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~~d~i~~l~------~G~i~~~g~~~~ 604 (1077)
|+ .+|++|||||||++||+.+.+.+.+.|+++. +|.|+|+|||+++.++.||+|++|. +|++++.|++++
T Consensus 824 L~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~~i~~aDrVi~L~p~gg~~~G~iv~~Gtpee 903 (1809)
T PRK00635 824 LLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMHVVKVADYVLELGPEGGNLGGYLLASCSPEE 903 (1809)
T ss_pred HhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEccCCCCCCCEEEEeCCHHH
Confidence 98 6999999999999999999999999998875 5899999999999998899999996 899999999999
Q ss_pred HhcC
Q 001438 605 LISN 608 (1077)
Q Consensus 605 l~~~ 608 (1077)
+...
T Consensus 904 l~~~ 907 (1809)
T PRK00635 904 LIHL 907 (1809)
T ss_pred HHhc
Confidence 9763
No 419
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.90 E-value=1.2e-22 Score=225.57 Aligned_cols=215 Identities=25% Similarity=0.453 Sum_probs=174.3
Q ss_pred cccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeC-CCCCHHHHh
Q 001438 379 SGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNI-KGLDLKWLR 457 (1077)
Q Consensus 379 ~~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~-~~~~~~~~r 457 (1077)
+..++++|++..-+. +...+++|||+|++||++||.|-.|-|-+-|+.+|+|+.+|.+|+|.++|+|+ ...+...+|
T Consensus 255 ~~vL~V~~L~v~~~~--~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r 332 (501)
T COG3845 255 EVVLEVEDLSVKDRR--GVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERR 332 (501)
T ss_pred CeEEEEeeeEeecCC--CCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHHH
Confidence 346899999986432 24578999999999999999999999999999999999999999999999997 666777766
Q ss_pred h-heeEEccCCC----cccccHHHHHhcCCCC---------CCHHHHHHHHHHHhHHHHHhcC---ccchhhhhcCCCCC
Q 001438 458 Q-QIGLVNQEPA----LFATTIRENILYGKDD---------ATMEEITRAAKLSEAMSFISNL---PERFETQVGERGIQ 520 (1077)
Q Consensus 458 ~-~i~~v~Q~~~----lf~~ti~~ni~~~~~~---------~~~~~~~~~~~~~~~~~~i~~l---~~g~~t~~~~~g~~ 520 (1077)
+ .+||||.|.. ....|+.||+.++... .+..++.+.++ +.++++ +.+.++ ...+
T Consensus 333 ~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~-----~li~~fdVr~~~~~~----~a~~ 403 (501)
T COG3845 333 RLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFAR-----ELIEEFDVRAPSPDA----PARS 403 (501)
T ss_pred hcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHH-----HHHHHcCccCCCCCc----chhh
Confidence 5 5999999974 3566999999876522 12233332221 112222 233333 3458
Q ss_pred CChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHhh-cCEEEEEECCEEEE
Q 001438 521 LSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVK 598 (1077)
Q Consensus 521 LSgGqkqri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~ 598 (1077)
||||++||+-+||-+.++|++||..+||-+||....+.|.+.|.+.+ .|+.+++|+-+++.+.. ||||.||.+|+++.
T Consensus 404 LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDEil~lsDrIaVi~~Gri~~ 483 (501)
T COG3845 404 LSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRIVG 483 (501)
T ss_pred cCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHHHHHHhhheeeeeeCCceec
Confidence 99999999999999999999999999999999999999988887764 69999999999998755 99999999999998
Q ss_pred ecChhH
Q 001438 599 TGSHEE 604 (1077)
Q Consensus 599 ~g~~~~ 604 (1077)
..++++
T Consensus 484 ~~~~~~ 489 (501)
T COG3845 484 IVPPEE 489 (501)
T ss_pred cccccc
Confidence 877665
No 420
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.90 E-value=5.2e-23 Score=255.30 Aligned_cols=98 Identities=35% Similarity=0.572 Sum_probs=91.1
Q ss_pred hhcCCCCCCChHHHHHHHHHHHhccCC---CEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHhhcCEE
Q 001438 513 QVGERGIQLSGGQKQRIAISRAIVKNP---SILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRNADVI 588 (1077)
Q Consensus 513 ~~~~~g~~LSgGqkqri~lARal~~~p---~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~~d~i 588 (1077)
.+++...+||||||||++|||+|+++| +++||||||++||+...+.+.+.|+++. +|.|+|+|||+++.+..||+|
T Consensus 823 ~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~~i~~aD~i 902 (943)
T PRK00349 823 KLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLDVIKTADWI 902 (943)
T ss_pred cccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEE
Confidence 357788899999999999999999999 9999999999999999999999998875 589999999999999899999
Q ss_pred EEE------ECCEEEEecChhHHhcCCC
Q 001438 589 AVV------QGRKIVKTGSHEELISNPN 610 (1077)
Q Consensus 589 ~~l------~~G~i~~~g~~~~l~~~~~ 610 (1077)
++| ++|+|++.|+++++.+++.
T Consensus 903 i~Lgp~~G~~~G~Iv~~Gt~~el~~~~~ 930 (943)
T PRK00349 903 IDLGPEGGDGGGEIVATGTPEEVAKVEA 930 (943)
T ss_pred EEecCCcCCCCCEEEEeCCHHHHHhCcc
Confidence 999 7999999999999987644
No 421
>PF00664 ABC_membrane: ABC transporter transmembrane region; InterPro: IPR001140 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A variety of ATP-binding transport proteins have a six transmembrane helical region. They are all integral membrane proteins involved in a variety of transport systems. Members of this family include; the cystic fibrosis transmembrane conductance regulator (CFTR), bacterial leukotoxin secretion ATP-binding protein, multidrug resistance proteins, the yeast leptomycin B resistance protein, the mammalian sulphonylurea receptor and antigen peptide transporter 2. Many of these proteins have two such regions.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3G61_B 3G5U_B 3G60_A 3B60_D 3QF4_B 2HYD_A 2ONJ_A 4A82_B 4AA3_A 2YL4_A.
Probab=99.89 E-value=1.5e-20 Score=207.09 Aligned_cols=271 Identities=21% Similarity=0.309 Sum_probs=225.2
Q ss_pred HHHHHHHHHhhHHhHHHHHHHHHHHhhccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 700 CGTICAIIAGAQMPLFALGVSQALVAYYMDWDTTQREVKKITILFCCAAVITVIVHAIEHLSFGIMGERLTLRVREKMFS 779 (1077)
Q Consensus 700 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~Lr~~l~~ 779 (1077)
.+.++.++.++..+..++.++..++...............+...++++.++.........+...+.+.+...++|+++++
T Consensus 3 l~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 82 (275)
T PF00664_consen 3 LAILLSILSGLLSLLFPLLLGQIIDSLSSGNSDNNSSLISLAFLLIAIFLLIFLFSYIYFYLSSRISQRIRKDLRKRLFE 82 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666667777778888888776332211111111122222223333444444455555678999999999999999
Q ss_pred HHHcCCccccccccCCchhHHHHHhhcHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 001438 780 AILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQNFGLVTASFVIAFILNWRITLVVVATYPLIISGHIS 859 (1077)
Q Consensus 780 ~llr~p~~FFD~~~~~~G~IlnR~s~D~~~i~~~l~~~l~~~~~~~~~~~~~i~i~~~~~w~l~l~~l~~~Pl~i~~~~~ 859 (1077)
++++.|.+||++ +++|+++||+++|++.+++.+...+..++..+..+++.++++++.+|+++++++++.|+..+....
T Consensus 83 ~~~~~~~~~~~~--~~~g~l~~~i~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~l~~l~~~~~~~~~~~~ 160 (275)
T PF00664_consen 83 KLLRLPYSYFDK--NSSGELLSRITNDIEQIENFLSSSLFQIISSIISIIFSLILLFFISWKLALILLIILPLLFLISFI 160 (275)
T ss_dssp HHHHSHHHHHHH--S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhhhh--hcccccccccccccccccccccccccccccccchhhhhhhcccccccccccccchhhhhhHhhhhh
Confidence 999999999995 999999999999999999999999999999999999999999999999999999999999988888
Q ss_pred HHHHHHhhhhhHHHHHHHHhHHHHHHHcchHHHHHhcchHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001438 860 EKLFFQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRSFIRGQIAGIFYGISQFFIFSSYG 939 (1077)
Q Consensus 860 ~~~~~~~~~~~~~~~~~~~~~~~~Etl~Gi~tIrAf~~e~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 939 (1077)
..+..++..++.++..++..+.+.|.++|+++||+|+.|+++.++|.+..++..+...+.....++..+..+.+......
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (275)
T PF00664_consen 161 FSKKIRKLSKKYQEANSELNSFLSESLSGIRTIKAFGAEDYFLERFNKALEKYRKASFKYAKIQALLSSISQFISYLSIV 240 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccccccccccccccccccccccccchhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH-hhcCCCCHHHHHHHHHHHHHHHHH
Q 001438 940 LALWYGSVL-MGKELASFKSVMKSFMVLIVTALA 972 (1077)
Q Consensus 940 ~~~~~g~~l-~~~~~~~~~~~~~~~~~~~~~~~~ 972 (1077)
+++++|+.+ +..|.+++++++.++.+......|
T Consensus 241 ~~~~~g~~~~~~~g~~s~g~~~~~~~~~~~~~~p 274 (275)
T PF00664_consen 241 LILIFGAYLSVINGQISIGTLVAFLSLSSQLINP 274 (275)
T ss_dssp HHHHHHHHH-HCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHhh
Confidence 999999999 999999999999887777665554
No 422
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.88 E-value=9e-22 Score=243.88 Aligned_cols=93 Identities=35% Similarity=0.614 Sum_probs=86.6
Q ss_pred hhcCCCCCCChHHHHHHHHHHHhcc---CCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHhhcCEE
Q 001438 513 QVGERGIQLSGGQKQRIAISRAIVK---NPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRNADVI 588 (1077)
Q Consensus 513 ~~~~~g~~LSgGqkqri~lARal~~---~p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~~d~i 588 (1077)
.+++...+||||||||++|||+|++ +|+++||||||++||+...+.+.+.|+++. +|.|+|+|+|+++.++.||+|
T Consensus 821 ~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~~i~~aD~i 900 (924)
T TIGR00630 821 KLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLDVIKTADYI 900 (924)
T ss_pred hhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEE
Confidence 3577889999999999999999997 599999999999999999999999998875 589999999999999889999
Q ss_pred EEE------ECCEEEEecChhHH
Q 001438 589 AVV------QGRKIVKTGSHEEL 605 (1077)
Q Consensus 589 ~~l------~~G~i~~~g~~~~l 605 (1077)
++| ++|+|++.|+++++
T Consensus 901 i~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 901 IDLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred EEecCCccCCCCEEEEeCCHHHh
Confidence 999 79999999999886
No 423
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.88 E-value=1.3e-22 Score=220.22 Aligned_cols=183 Identities=17% Similarity=0.178 Sum_probs=123.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCee-C-C-----CCCHHHHhhheeEEccCCC--cccccHHHHHh-c
Q 001438 411 KIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNN-I-K-----GLDLKWLRQQIGLVNQEPA--LFATTIRENIL-Y 480 (1077)
Q Consensus 411 ~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~-~-~-----~~~~~~~r~~i~~v~Q~~~--lf~~ti~~ni~-~ 480 (1077)
.+++|+||||||||||+.+|.+...+..|++..++.+ + . ..+.....-.+.|..|++. ++..++++.-. +
T Consensus 23 ~~~~i~G~NGsGKStll~ai~~~l~~~~~~~r~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~~~~~~~ 102 (247)
T cd03275 23 RFTCIIGPNGSGKSNLMDAISFVLGEKSSHLRSKNLKDLIYRARVGKPDSNSAYVTAVYEDDDGEEKTFRRIITGGSSSY 102 (247)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCcccccccchhhhcccCccccCCCceEEEEEEEEcCCCcEEEEEEEEECCceEE
Confidence 3999999999999999999999998877877654421 1 1 0111122334556556543 33444443321 1
Q ss_pred C--CCCCCHHHHHHHHHHHhHHHHHhc--Cccchhhhhc---------CCCCCCChHHHHHHHHHHHhccC----CCEEE
Q 001438 481 G--KDDATMEEITRAAKLSEAMSFISN--LPERFETQVG---------ERGIQLSGGQKQRIAISRAIVKN----PSILL 543 (1077)
Q Consensus 481 ~--~~~~~~~~~~~~~~~~~~~~~i~~--l~~g~~t~~~---------~~g~~LSgGqkqri~lARal~~~----p~ill 543 (1077)
. ....+.+++.+.++..+...+... +++|.-+.+. ....+||||||||++||||++.+ |+++|
T Consensus 103 ~ingk~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al~~~~~~~p~~ll 182 (247)
T cd03275 103 RINGKVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLFAIHSYQPAPFFV 182 (247)
T ss_pred EECCEEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHHHHhccCCCCEEE
Confidence 1 122344555555444443211000 1223222222 22378999999999999999864 89999
Q ss_pred EeCcCCCCCHHHHHHHHHHHHHHhC-CCeEEEEccCchhHhhcCEEEEEEC
Q 001438 544 LDEATSALDAESENSVQEALDRVMV-GRTTVVVAHRLSTIRNADVIAVVQG 593 (1077)
Q Consensus 544 lDEpts~lD~~~~~~i~~~l~~~~~-~~t~i~vtH~~~~~~~~d~i~~l~~ 593 (1077)
|||||++||+.....+.+.|+++.+ |.|+|+|||+.+.++.||++++|..
T Consensus 183 lDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~~~~~~~d~i~~~~~ 233 (247)
T cd03275 183 LDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKEEFFSKADALVGVYR 233 (247)
T ss_pred EecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCHHHHhhCCeEEEEEe
Confidence 9999999999999999999998754 8899999999988888999999864
No 424
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.87 E-value=4.7e-22 Score=194.81 Aligned_cols=233 Identities=21% Similarity=0.357 Sum_probs=171.2
Q ss_pred EEEeEEEEcCC-CCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCC----CccEEEECCeeCCCCCHHHHh
Q 001438 383 EFKDVSFCYPS-RPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEP----LSGEILLDGNNIKGLDLKWLR 457 (1077)
Q Consensus 383 ~~~~v~~~y~~-~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~----~~G~i~~~g~~~~~~~~~~~r 457 (1077)
.++|++..+.. .....+.+++|+++..||+-|+||+||||||-+.++|+|..+- +.-+..+++.|+-++++++.|
T Consensus 5 DIrnL~IE~~TsqG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~RR 84 (330)
T COG4170 5 DIRNLTIEFKTSQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRERR 84 (330)
T ss_pred cccceEEEEecCCCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHhh
Confidence 34455444422 1234578999999999999999999999999999999998753 455667888888888888877
Q ss_pred h----heeEEccCCCcc---cccH----HHHHhcCC-CCCCHHH-HHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChH
Q 001438 458 Q----QIGLVNQEPALF---ATTI----RENILYGK-DDATMEE-ITRAAKLSEAMSFISNLPERFETQVGERGIQLSGG 524 (1077)
Q Consensus 458 ~----~i~~v~Q~~~lf---~~ti----~~ni~~~~-~~~~~~~-~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgG 524 (1077)
+ .|+.++|+|.-. +.+| -+||-+-. .....+. -++.-+..+++..+. ..+. .......+..|-.|
T Consensus 85 k~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVG-IKdH-kDIM~SYP~ElTeG 162 (330)
T COG4170 85 KLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVG-IKDH-KDIMRSYPYELTEG 162 (330)
T ss_pred hhhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhc-cccH-HHHHHhCcchhccC
Confidence 5 478999999643 2244 34442110 0000110 111111111111111 1110 11234556679999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEccCchhHhh-cCEEEEEECCEEEEecC
Q 001438 525 QKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGS 601 (1077)
Q Consensus 525 qkqri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~ 601 (1077)
+-|++.||-|+..+|++||-||||+++|+.+..+|...|.++. .+.|+++++|++..+.. ||+|-||.-|+-+|.+.
T Consensus 163 E~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~~is~W~d~i~VlYCGQ~~ESa~ 242 (330)
T COG4170 163 ECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADKINVLYCGQTVESAP 242 (330)
T ss_pred cceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHHHHHHHhhheEEEEecccccccc
Confidence 9999999999999999999999999999999999999998764 57899999999999976 99999999999999999
Q ss_pred hhHHhcCCCchHHHHH
Q 001438 602 HEELISNPNSAYAALV 617 (1077)
Q Consensus 602 ~~~l~~~~~~~~~~~~ 617 (1077)
.+++++.++..|.+..
T Consensus 243 ~e~l~~~PhHPYTqAL 258 (330)
T COG4170 243 SEELVTMPHHPYTQAL 258 (330)
T ss_pred hhHHhcCCCCchHHHH
Confidence 9999999999987644
No 425
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.87 E-value=1.9e-21 Score=215.35 Aligned_cols=195 Identities=25% Similarity=0.303 Sum_probs=160.2
Q ss_pred cccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhh
Q 001438 379 SGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQ 458 (1077)
Q Consensus 379 ~~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~ 458 (1077)
+..+++.+|+|.|+..+ .+.+.+++++++.-+.+++||++|+||||+++++.+...|.+|.+.+.+ |.
T Consensus 360 ~p~l~i~~V~f~y~p~~-y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~-----------r~ 427 (582)
T KOG0062|consen 360 PPNLRISYVAFEYTPSE-YQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHP-----------RL 427 (582)
T ss_pred CCeeEEEeeeccCCCcc-hhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecc-----------cc
Confidence 34699999999997543 2789999999999999999999999999999999999999999998877 56
Q ss_pred heeEEccCCCc-ccc--cHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCC-CCCCChHHHHHHHHHHH
Q 001438 459 QIGLVNQEPAL-FAT--TIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGER-GIQLSGGQKQRIAISRA 534 (1077)
Q Consensus 459 ~i~~v~Q~~~l-f~~--ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~-g~~LSgGqkqri~lARa 534 (1077)
+|+|-.|.-.= ++- +.-|-..-..|....+++.+.|...++ +..+.-. ...||||||-|+++|-.
T Consensus 428 ri~~f~Qhhvd~l~~~v~~vd~~~~~~pG~~~ee~r~hl~~~Gl-----------~g~la~~si~~LSGGQKsrvafA~~ 496 (582)
T KOG0062|consen 428 RIKYFAQHHVDFLDKNVNAVDFMEKSFPGKTEEEIRRHLGSFGL-----------SGELALQSIASLSGGQKSRVAFAAC 496 (582)
T ss_pred eecchhHhhhhHHHHHhHHHHHHHHhCCCCCHHHHHHHHHhcCC-----------CchhhhccccccCCcchhHHHHHHH
Confidence 79999997532 232 223333222355578888887766543 3223222 35799999999999999
Q ss_pred hccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhh-cCEEEEEECCEEEE
Q 001438 535 IVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVK 598 (1077)
Q Consensus 535 l~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~ 598 (1077)
...+|.+|+|||||+.||.++-..+-++|+.... .||+|||+.++++. |+.+.+.++|++..
T Consensus 497 ~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F~G--GVv~VSHd~~fi~~~c~E~Wvve~g~vt~ 559 (582)
T KOG0062|consen 497 TWNNPHLLVLDEPTNHLDRDSLGALAKALKNFNG--GVVLVSHDEEFISSLCKELWVVEDGKVTP 559 (582)
T ss_pred hcCCCcEEEecCCCccccHHHHHHHHHHHHhcCC--cEEEEECcHHHHhhcCceeEEEcCCcEEe
Confidence 9999999999999999999999999999987643 59999999999987 99999999999975
No 426
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.87 E-value=1e-21 Score=210.86 Aligned_cols=191 Identities=29% Similarity=0.419 Sum_probs=147.5
Q ss_pred ccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhh
Q 001438 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQ 459 (1077)
Q Consensus 380 ~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~ 459 (1077)
..+-++||+|.|++. .+.+++++|-|.--..+|||||||.|||||+++|.|.++|+.|+..-+- |-+
T Consensus 585 PvLGlH~VtFgy~gq--kpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnh-----------rL~ 651 (807)
T KOG0066|consen 585 PVLGLHDVTFGYPGQ--KPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNH-----------RLR 651 (807)
T ss_pred CeeecccccccCCCC--CchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhccc-----------eee
Confidence 457889999999865 4789999999999999999999999999999999999999999875432 336
Q ss_pred eeEEccCCC-ccc--ccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhc
Q 001438 460 IGLVNQEPA-LFA--TTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIV 536 (1077)
Q Consensus 460 i~~v~Q~~~-lf~--~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~ 536 (1077)
||+-.|... -.+ .|-.|.+.-+. +..+++...++...++. ...+|. ....||||||.|+++|---+
T Consensus 652 iG~FdQh~~E~L~~Eetp~EyLqr~F-Nlpyq~ARK~LG~fGL~-------sHAHTi---kikdLSGGQKaRValaeLal 720 (807)
T KOG0066|consen 652 IGWFDQHANEALNGEETPVEYLQRKF-NLPYQEARKQLGTFGLA-------SHAHTI---KIKDLSGGQKARVALAELAL 720 (807)
T ss_pred eechhhhhHHhhccccCHHHHHHHhc-CCChHHHHHHhhhhhhh-------hccceE---eeeecCCcchHHHHHHHHhc
Confidence 999888753 222 37777775433 23455555544433321 112222 34579999999999999999
Q ss_pred cCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhhcC-EEEEEECCEE
Q 001438 537 KNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNAD-VIAVVQGRKI 596 (1077)
Q Consensus 537 ~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~~d-~i~~l~~G~i 596 (1077)
+.||||||||||.+||.++-..+-++|.+.. -.||+|||+-..+...| ..+|+++-.|
T Consensus 721 ~~PDvlILDEPTNNLDIESIDALaEAIney~--GgVi~VsHDeRLi~eT~C~LwVvE~Q~i 779 (807)
T KOG0066|consen 721 GGPDVLILDEPTNNLDIESIDALAEAINEYN--GGVIMVSHDERLIVETDCNLWVVENQGI 779 (807)
T ss_pred CCCCEEEecCCCCCcchhhHHHHHHHHHhcc--CcEEEEecccceeeecCceEEEEccCCh
Confidence 9999999999999999999999999998864 46999999999887644 3455555444
No 427
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.85 E-value=3.5e-21 Score=200.96 Aligned_cols=172 Identities=17% Similarity=0.199 Sum_probs=118.1
Q ss_pred ccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCC-CHHHHhhheeEEccCCCcccccHHHHH
Q 001438 400 FDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGL-DLKWLRQQIGLVNQEPALFATTIRENI 478 (1077)
Q Consensus 400 l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~-~~~~~r~~i~~v~Q~~~lf~~ti~~ni 478 (1077)
++++++++.+| +.+|+||||||||||+.+|.-.+..... ....|..+.++ ....-...|.+.+|+.-++. |
T Consensus 12 ~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~~-~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~-----~- 83 (198)
T cd03276 12 HRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKAS-DTNRGSSLKDLIKDGESSAKITVTLKNQGLDA-----N- 83 (198)
T ss_pred eeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCcc-cccccccHHHHhhCCCCeEEEEEEEEcCCccC-----C-
Confidence 46677888877 8899999999999999998744332211 01112211110 00011345778888766554 2
Q ss_pred hcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHh----ccCCCEEEEeCcCCCCCHH
Q 001438 479 LYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAI----VKNPSILLLDEATSALDAE 554 (1077)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal----~~~p~illlDEpts~lD~~ 554 (1077)
+ ....+. ....++++. .....++..+||+|||||++||||+ +.+|+++||||||++||..
T Consensus 84 ----~-~~~~~~------~~~~~~l~~-----~~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~ 147 (198)
T cd03276 84 ----P-LCVLSQ------DMARSFLTS-----NKAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMV 147 (198)
T ss_pred ----c-CCHHHH------HHHHHHhcc-----ccccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHH
Confidence 1 111111 112222332 1223456679999999999999999 6899999999999999999
Q ss_pred HHHHHHHHHHHHhC----CCeEEEEccCchhHhhcCEEEEEECCE
Q 001438 555 SENSVQEALDRVMV----GRTTVVVAHRLSTIRNADVIAVVQGRK 595 (1077)
Q Consensus 555 ~~~~i~~~l~~~~~----~~t~i~vtH~~~~~~~~d~i~~l~~G~ 595 (1077)
+...+.+.|.+..+ ++|+|++||+++.+..+|+|-+|..++
T Consensus 148 ~~~~~~~~l~~~~~~~~~~~~iii~th~~~~i~~~d~v~~~~~~~ 192 (198)
T cd03276 148 NRKISTDLLVKEAKKQPGRQFIFITPQDISGLASSDDVKVFRMKD 192 (198)
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEECCcccccccccceeEEEecC
Confidence 99999999987632 358999999999999999999998754
No 428
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.85 E-value=5.2e-21 Score=208.15 Aligned_cols=182 Identities=24% Similarity=0.418 Sum_probs=138.0
Q ss_pred eEEEEcCCCCCcccccceeEEec-----CCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhe
Q 001438 386 DVSFCYPSRPDVAIFDKFCLDIP-----AGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (1077)
Q Consensus 386 ~v~~~y~~~~~~~~l~~isl~i~-----~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 460 (1077)
+.-+.|++- ...+.+..|+++ .||+++++||||-||||++++|+|.++|++|. ..++ +|
T Consensus 340 ~~lv~y~~~--~k~~g~F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~----~~~~----------~v 403 (591)
T COG1245 340 DTLVEYPDL--KKTYGDFKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS----EEDL----------KV 403 (591)
T ss_pred ceeeecchh--eeecCceEEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCC----Cccc----------eE
Confidence 334555532 224566777765 57889999999999999999999999999998 2222 59
Q ss_pred eEEccCCC-cccccHHHHHhcCCCC-CCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccC
Q 001438 461 GLVNQEPA-LFATTIRENILYGKDD-ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKN 538 (1077)
Q Consensus 461 ~~v~Q~~~-lf~~ti~~ni~~~~~~-~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~ 538 (1077)
+|=||--. -|++||++-+.-..+. ....... . +.+ -|-.++..+..+..+||||+.||+|||-||.++
T Consensus 404 SyKPQyI~~~~~gtV~~~l~~~~~~~~~~s~~~--~------ei~--~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~re 473 (591)
T COG1245 404 SYKPQYISPDYDGTVEDLLRSAIRSAFGSSYFK--T------EIV--KPLNLEDLLERPVDELSGGELQRVAIAAALSRE 473 (591)
T ss_pred eecceeecCCCCCcHHHHHHHhhhhhcccchhH--H------hhc--CccchHHHHhcccccCCchhHHHHHHHHHhccc
Confidence 99999642 3899999987543322 1111000 0 111 133444455566678999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEccCchhHhh-cCEEEEEEC
Q 001438 539 PSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQG 593 (1077)
Q Consensus 539 p~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~~~-~d~i~~l~~ 593 (1077)
+|++|||||++.||.+.+-.+-+.|++.. .++|.++|-|++-.+.. +||++|.+.
T Consensus 474 ADlYllDEPSA~LDvEqR~~vakvIRR~~e~~~kta~vVdHDi~~~dyvsDr~ivF~G 531 (591)
T COG1245 474 ADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDIYMIDYVSDRLIVFEG 531 (591)
T ss_pred cCEEEecCchhhccHHHHHHHHHHHHHHHhhcCceEEEEecceehhhhhhceEEEEec
Confidence 99999999999999999999999998864 57899999999999987 999998854
No 429
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=6.4e-22 Score=218.98 Aligned_cols=202 Identities=26% Similarity=0.388 Sum_probs=137.3
Q ss_pred cccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCee--CCCCCHHHH
Q 001438 379 SGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNN--IKGLDLKWL 456 (1077)
Q Consensus 379 ~~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~--~~~~~~~~~ 456 (1077)
..+|...|++.+|++ +.+|.+-++++..|..+|+|||||+|||||+++|.. |+|..-..+ ++......
T Consensus 78 ~~Di~~~~fdLa~G~---k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~------~~v~~f~veqE~~g~~t~~- 147 (582)
T KOG0062|consen 78 SKDIHIDNFDLAYGG---KILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN------GQVSGFHVEQEVRGDDTEA- 147 (582)
T ss_pred ccceeeeeeeeeecc---hhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh------cCcCccCchhheeccchHH-
Confidence 357899999999974 358999999999999999999999999999999997 444322211 10000000
Q ss_pred hhheeEEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHhHHH-HHhcCccchhhhhc-CCCCCCChHHHHHHHHHHH
Q 001438 457 RQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMS-FISNLPERFETQVG-ERGIQLSGGQKQRIAISRA 534 (1077)
Q Consensus 457 r~~i~~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~-~i~~l~~g~~t~~~-~~g~~LSgGqkqri~lARa 534 (1077)
.| ..+-.++-+.-+..-. +++.....+.+..+ .+..+ |+....- .....||||-|-|++||||
T Consensus 148 -------~~-~~l~~D~~~~dfl~~e-----~~l~~~~~l~ei~~~~L~gl--GFt~emq~~pt~slSGGWrMrlaLARA 212 (582)
T KOG0062|consen 148 -------LQ-SVLESDTERLDFLAEE-----KELLAGLTLEEIYDKILAGL--GFTPEMQLQPTKSLSGGWRMRLALARA 212 (582)
T ss_pred -------Hh-hhhhccHHHHHHHHhh-----hhhhccchHHHHHHHHHHhC--CCCHHHHhccccccCcchhhHHHHHHH
Confidence 00 0112222222222111 01111001111111 12222 3433332 3445899999999999999
Q ss_pred hccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhh-cCEEEEEECCEE-EEecChhHHhc
Q 001438 535 IVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKI-VKTGSHEELIS 607 (1077)
Q Consensus 535 l~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i-~~~g~~~~l~~ 607 (1077)
|..+||||||||||+.||..+-.-+.+.|..+. .|+|+|+|+-+++.. |..|+.+++-++ ...|++++..+
T Consensus 213 lf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~~--~T~liVSHDr~FLn~V~tdIIH~~~~kL~~YkGN~~~Fvk 285 (582)
T KOG0062|consen 213 LFAKPDLLLLDEPTNHLDVVAVAWLENYLQTWK--ITSLIVSHDRNFLNTVCTDIIHLENLKLDYYKGNYSQFVK 285 (582)
T ss_pred HhcCCCEEeecCCcccchhHHHHHHHHHHhhCC--ceEEEEeccHHHHHHHHHHHHHHhhhhhhhhcCcHHHHHH
Confidence 999999999999999999999999999887763 899999999999987 999999988776 35677766654
No 430
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.82 E-value=1.8e-19 Score=176.56 Aligned_cols=211 Identities=24% Similarity=0.356 Sum_probs=157.4
Q ss_pred cccEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCC-CCH----
Q 001438 379 SGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKG-LDL---- 453 (1077)
Q Consensus 379 ~~~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~-~~~---- 453 (1077)
+..|++.++.|+|+... |++-|+|++++.|....+||.||||||||+++|.|-.-...|.|.+.|.+--. -..
T Consensus 11 ~~aievsgl~f~y~~~d--P~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~~Sg 88 (291)
T KOG2355|consen 11 DFAIEVSGLQFKYKVSD--PIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLESSG 88 (291)
T ss_pred cceEEEeccEEecccCC--ceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCccccccccccC
Confidence 45799999999998643 78999999999999999999999999999999999888778999999976421 111
Q ss_pred ------HHHhhheeEEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHH
Q 001438 454 ------KWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQ 527 (1077)
Q Consensus 454 ------~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkq 527 (1077)
.+|++..+.--.-|.--+-++. .+.||....+.+.-. ++... +|-.+.-+-..+|-|||+
T Consensus 89 dl~YLGgeW~~~~~~agevplq~D~sae-~mifgV~g~dp~Rre---~LI~i----------LDIdl~WRmHkvSDGqrR 154 (291)
T KOG2355|consen 89 DLSYLGGEWSKTVGIAGEVPLQGDISAE-HMIFGVGGDDPERRE---KLIDI----------LDIDLRWRMHKVSDGQRR 154 (291)
T ss_pred ceeEecccccccccccccccccccccHH-HHHhhccCCChhHhh---hhhhh----------eeccceEEEeeccccchh
Confidence 1344444444322221122443 344554322222211 11111 122233355679999999
Q ss_pred HHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEccCchhHhh-cCEEEEEECCEEEEecChhH
Q 001438 528 RIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEE 604 (1077)
Q Consensus 528 ri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~ 604 (1077)
|+.|+..|++.-++|+|||.|--||.-.+..+.+.+++.. +|.|++..||-.+-++. +.+++.|++|+++..-++++
T Consensus 155 RVQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFDGLe~Wpthl~yi~~Gkl~~~l~~~~ 234 (291)
T KOG2355|consen 155 RVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFDGLETWPTHLVYIKSGKLVDNLKYQK 234 (291)
T ss_pred hhHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeeccchhhcchhEEEecCCeeeeccccch
Confidence 9999999999999999999999999999999999998753 68999999999998865 99999999999998555544
Q ss_pred H
Q 001438 605 L 605 (1077)
Q Consensus 605 l 605 (1077)
+
T Consensus 235 i 235 (291)
T KOG2355|consen 235 I 235 (291)
T ss_pred h
Confidence 3
No 431
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.82 E-value=1e-19 Score=186.27 Aligned_cols=84 Identities=24% Similarity=0.280 Sum_probs=76.3
Q ss_pred hcCccchhhhhcCCCCCCChHHHHHHHHHHHhc----cCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccC
Q 001438 504 SNLPERFETQVGERGIQLSGGQKQRIAISRAIV----KNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHR 578 (1077)
Q Consensus 504 ~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~----~~p~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~ 578 (1077)
..+|+|..|++ ||||||||++|||++. .+|+++++|||+++||+...+.+.+.+.++. +++|+|++||+
T Consensus 84 ~~~~~~~~~~~------LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~ 157 (178)
T cd03239 84 FLVLQGKVEQI------LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLK 157 (178)
T ss_pred EEecCCcCccc------CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECC
Confidence 35788888877 9999999999999985 7999999999999999999999999998874 46899999999
Q ss_pred chhHhhcCEEEEEEC
Q 001438 579 LSTIRNADVIAVVQG 593 (1077)
Q Consensus 579 ~~~~~~~d~i~~l~~ 593 (1077)
.+.+..+|+++.+++
T Consensus 158 ~~~~~~adrvi~i~~ 172 (178)
T cd03239 158 KEMFENADKLIGVLF 172 (178)
T ss_pred HHHHhhCCeEEEEEE
Confidence 999989999999876
No 432
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.78 E-value=5.2e-19 Score=186.58 Aligned_cols=180 Identities=15% Similarity=0.139 Sum_probs=112.7
Q ss_pred cceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhheeEEccCCCc---cccc----
Q 001438 401 DKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPAL---FATT---- 473 (1077)
Q Consensus 401 ~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l---f~~t---- 473 (1077)
+++.+++.+| +.+|+||||||||||+.+|.-..-...... ... ....++ +..=.++.++ |...
T Consensus 15 ~~~~i~~~~g-~n~i~G~NgsGKS~lleAi~~~l~~~~~~~-~r~-----~~~~~~---i~~g~~~~~v~~~~~~~~~~~ 84 (213)
T cd03277 15 DETEFRPGPS-LNMIIGPNGSGKSSIVCAICLGLGGKPKLL-GRA-----KKVGEF---VKRGCDEGTIEIELYGNPGNI 84 (213)
T ss_pred ceeEEecCCC-eEEEECCCCCCHHHHHHHHHHHhcCCcccc-ccc-----cCHHHH---hhCCCCcEEEEEEEEeCCCcc
Confidence 4556666555 779999999999999999865542211100 000 011111 0000111111 1110
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHH----hccCCCEEEEeCcCC
Q 001438 474 IRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRA----IVKNPSILLLDEATS 549 (1077)
Q Consensus 474 i~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARa----l~~~p~illlDEpts 549 (1077)
..+|+.+- ...+++.+...+... +.+..+|.+.+. -..++.+||||||||+.+|++ ++.+|+++|+||||+
T Consensus 85 ~~~n~~~~---~~q~~~~~~~~~~~~-e~l~~~~~~~~~-~~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~ 159 (213)
T cd03277 85 QVDNLCQF---LPQDRVGEFAKLSPI-ELLVKFREGEQL-QELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQ 159 (213)
T ss_pred ccCCceEE---EchHHHHHHHhCChH-hHheeeecCCCc-cccchhhccccHHHHHHHHHHHHHHhccCCCEEEEecccc
Confidence 23333321 133444455554433 445566655432 245678999999999887755 458999999999999
Q ss_pred CCCHHHHHHHHHHHHHHhC--C-CeEEEEccCchhH-hhcC--EEEEEECCE
Q 001438 550 ALDAESENSVQEALDRVMV--G-RTTVVVAHRLSTI-RNAD--VIAVVQGRK 595 (1077)
Q Consensus 550 ~lD~~~~~~i~~~l~~~~~--~-~t~i~vtH~~~~~-~~~d--~i~~l~~G~ 595 (1077)
+||+.+.+.+.+.+.+..+ + .|+|++||++... ..|| +|++|++|+
T Consensus 160 ~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~~~~~~~~~~~v~~l~~g~ 211 (213)
T cd03277 160 GMDPTNERKVFDMLVETACKEGTSQYFLITPKLLPGLNYHEKMTVLCVYNGP 211 (213)
T ss_pred cCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhccCCcccCceEEEEEecCc
Confidence 9999999999999988743 4 4799999998654 4465 788888886
No 433
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.78 E-value=8.5e-19 Score=191.10 Aligned_cols=191 Identities=22% Similarity=0.372 Sum_probs=135.2
Q ss_pred eEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEE-----------ECCeeCCCCCH-
Q 001438 386 DVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEIL-----------LDGNNIKGLDL- 453 (1077)
Q Consensus 386 ~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~-----------~~g~~~~~~~~- 453 (1077)
++..+|+.+. ..|.++- ..++|+.+||+||||-||||-+++|+|.+.|.=|+-. +.|..+.++-.
T Consensus 79 e~vHRYg~Ng--FkL~~LP-~pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~~~pp~wdeVi~~FrGtELq~YF~~ 155 (591)
T COG1245 79 EVVHRYGVNG--FKLYRLP-TPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQNYFKK 155 (591)
T ss_pred cceeeccCCc--eEEecCC-CCCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCCCCCCCHHHHHHHhhhhHHHHHHHH
Confidence 4567786432 2344443 4679999999999999999999999999999877531 11111111100
Q ss_pred ---HHHh--hheeEEccCCCcccccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHH
Q 001438 454 ---KWLR--QQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQR 528 (1077)
Q Consensus 454 ---~~~r--~~i~~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqr 528 (1077)
.++| .++-||.--|-.+.|+++|-+.--...-..+++.+.+. ++..++....+||||+-||
T Consensus 156 l~~g~~r~v~K~QYVd~iPk~~KG~v~elLk~~de~g~~devve~l~--------------L~nvl~r~v~~LSGGELQr 221 (591)
T COG1245 156 LYEGELRAVHKPQYVDLIPKVVKGKVGELLKKVDERGKFDEVVERLG--------------LENVLDRDVSELSGGELQR 221 (591)
T ss_pred HHcCCcceecchHHHHHHHHHhcchHHHHHHhhhhcCcHHHHHHHhc--------------chhhhhhhhhhcCchHHHH
Confidence 0111 12334444466677888876643222223333333332 3334455567899999999
Q ss_pred HHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCeEEEEccCchhHhh-cCEEEEEEC
Q 001438 529 IAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMV-GRTTVVVAHRLSTIRN-ADVIAVVQG 593 (1077)
Q Consensus 529 i~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~-~~t~i~vtH~~~~~~~-~d~i~~l~~ 593 (1077)
+|||-|+.+++|++++|||+|-||...+-..-+.|+++.+ ++++|+|.|+|..+.. +|-|-++-.
T Consensus 222 ~aIaa~l~rdADvY~FDEpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEHDLavLD~lsD~vhI~YG 288 (591)
T COG1245 222 VAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDLAVLDYLSDFVHILYG 288 (591)
T ss_pred HHHHHHHhccCCEEEEcCCcccccHHHHHHHHHHHHHHhccCCeEEEEechHHHHHHhhheeEEEec
Confidence 9999999999999999999999999999888889988876 7999999999999987 999888754
No 434
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.78 E-value=6.5e-19 Score=185.05 Aligned_cols=144 Identities=16% Similarity=0.161 Sum_probs=108.2
Q ss_pred ccceeEEecCCc-EEEEEcCCCCcHHHHHHHHh--------cccCCCccEEEECCeeCCCCCHHHHhhheeEEccCCCcc
Q 001438 400 FDKFCLDIPAGK-IVALVGGSGSGKSTVISLIE--------RFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALF 470 (1077)
Q Consensus 400 l~~isl~i~~g~-~~~ivG~~GsGKSTl~~~l~--------g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf 470 (1077)
..++||++++|+ +++|+||||||||||++.|. |.+.|....+ .++|..|.-..
T Consensus 17 ~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~~~-----------------~~~~~~~~~~~- 78 (200)
T cd03280 17 VVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEGS-----------------SLPVFENIFAD- 78 (200)
T ss_pred eEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccccccc-----------------cCcCccEEEEe-
Confidence 457999999996 79999999999999999988 5444432111 13443333110
Q ss_pred cccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCcCCC
Q 001438 471 ATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSA 550 (1077)
Q Consensus 471 ~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~p~illlDEpts~ 550 (1077)
++ .+..+.++-.++|+|+||+..+++++ .+|+++++|||+++
T Consensus 79 ---------lg----------------------------~~~~l~~~~s~fs~g~~~~~~i~~~~-~~p~llllDEp~~g 120 (200)
T cd03280 79 ---------IG----------------------------DEQSIEQSLSTFSSHMKNIARILQHA-DPDSLVLLDELGSG 120 (200)
T ss_pred ---------cC----------------------------chhhhhcCcchHHHHHHHHHHHHHhC-CCCcEEEEcCCCCC
Confidence 00 01112233457999999999999985 89999999999999
Q ss_pred CCHHHHHHHH-HHHHHHh-CCCeEEEEccCchhHhhcCEEEEEECCEEEEe
Q 001438 551 LDAESENSVQ-EALDRVM-VGRTTVVVAHRLSTIRNADVIAVVQGRKIVKT 599 (1077)
Q Consensus 551 lD~~~~~~i~-~~l~~~~-~~~t~i~vtH~~~~~~~~d~i~~l~~G~i~~~ 599 (1077)
+|+.....+. ..++.+. .+.|+|++||+.+..+.||++.+|++|++...
T Consensus 121 lD~~~~~~i~~~~l~~l~~~~~~vi~~tH~~~l~~~~d~~~~l~~g~l~~~ 171 (200)
T cd03280 121 TDPVEGAALAIAILEELLERGALVIATTHYGELKAYAYKREGVENASMEFD 171 (200)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHhcCCCeEEEEEEEe
Confidence 9999988885 4566554 47899999999766677999999999999865
No 435
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.77 E-value=3.3e-18 Score=188.83 Aligned_cols=76 Identities=18% Similarity=0.267 Sum_probs=70.2
Q ss_pred CCChHHHHHHHHHHHhcc----CCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhhcCEEEEEECCE
Q 001438 520 QLSGGQKQRIAISRAIVK----NPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRK 595 (1077)
Q Consensus 520 ~LSgGqkqri~lARal~~----~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~~d~i~~l~~G~ 595 (1077)
.|||||+||++|||+++. +|++++|||||++||+.....+.+.+++..++.|+|++||+++....||++++|++|.
T Consensus 170 ~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~~~tii~isH~~~~~~~~d~~~~l~~~~ 249 (276)
T cd03241 170 IASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSRSHQVLCITHLPQVAAMADNHFLVEKEV 249 (276)
T ss_pred hcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEechHHHHHhcCcEEEEEEec
Confidence 499999999999997654 9999999999999999999999999998877899999999999888899999998874
No 436
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.77 E-value=3.4e-15 Score=173.91 Aligned_cols=335 Identities=12% Similarity=0.046 Sum_probs=218.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccc---CCchhHHHHHhhcHHHHHHHHHhh
Q 001438 741 TILFCCAAVITVIVHAIEHLSFGIMGERLTLRVREKMFSAILSNEIGWFDEMD---NSSSILASRLESDATLLRTIVVDR 817 (1077)
Q Consensus 741 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~Lr~~l~~~llr~p~~FFD~~~---~~~G~IlnR~s~D~~~i~~~l~~~ 817 (1077)
..+|..++++..+....+.++-.....++-.-|-+.+.++-+...-.||..-. +-+=..-.|+..|+...-+...+.
T Consensus 89 l~~f~~ia~~~v~~~v~~~~L~~~l~~~wR~wLt~~l~~~wl~~~~~y~l~~~~~~~~~dNpDQRi~eDi~~~t~~t~~l 168 (604)
T COG4178 89 LQVFAIIAGLLVLLNVAQTWLNQMLRLRWREWLTKDLLDRWLDPRRYYRLAQAGGIGLIDNPDQRIQEDIRNFTETTLDL 168 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHhcccccCCCChHHhHHHHHHHHHhhHHHH
Confidence 56677777777777777888777777777666777777777776644443211 111123479999999987776666
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---------------hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHH
Q 001438 818 STILIQNFGLVTASFVIAFIL---------------NWRITLVVVATYPLIISGHISEKLFFQGYGGNLSKAYLKANMLA 882 (1077)
Q Consensus 818 l~~~~~~~~~~~~~i~i~~~~---------------~w~l~l~~l~~~Pl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 882 (1077)
...++..+++++.-.++.+-. ...+.++++.-+++.-+...+.++.+.+..-..++..+......
T Consensus 169 ~~g~l~s~islisF~~iLw~lsg~~~~~~~g~~~~I~g~mv~~~i~Ya~~~s~~~~~iGr~Li~LN~~~~~~EA~fR~~L 248 (604)
T COG4178 169 SFGLLQSVISLISFTGILWSLSGGLAFTIGGFSFGIPGYMVWAVIIYAISASLLTHLIGRPLIRLNFERQKLEADFRYSL 248 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCcceEeecccccccchHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHH
Confidence 666777776666655555421 11222333333333333333333333332222233333333334
Q ss_pred HHHHcchHHHHHhcchHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHH
Q 001438 883 AEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRSFIRGQIAGIFYGISQFFIFSSYGLALWYGSVLMGKELASFKSVMKS 962 (1077)
Q Consensus 883 ~Etl~Gi~tIrAf~~e~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~ 962 (1077)
...-++...|..|+.|+.+.++-.+..+..-....+.....-....+.....++...+-+..++-....|.+++|+++..
T Consensus 249 vrv~enaE~IAly~GE~~Er~~l~~~f~~v~~n~~~l~~~~~~l~~~~~gy~~~s~v~P~li~ap~~f~g~i~~G~lmqa 328 (604)
T COG4178 249 VRVRENAEAIALYRGEKVERRRLDDRFDAVLGNWRRLVRAQIRLTWFQLGYGWLSVVLPILIAAPRYFSGQITFGGLMQA 328 (604)
T ss_pred HHHHhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHhccHhhhcCcChHHHHHHH
Confidence 45566777889999998887776665555554433333333333344444444444444445555567899999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHcCCC------CccCCCCcc--c-ccccccEEEeeeeeeCCCCCcc
Q 001438 963 FMVLIVTALAMGETLALVPDLLKGNQMAASVFEVLDRKT------QVIGDIGEE--L-TNVEGTIELRGVHFSYPSRPEV 1033 (1077)
Q Consensus 963 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~------~~~~~~~~~--~-~~~~G~I~f~nVsf~Y~~~~~~ 1033 (1077)
..+...+..+++.+...++.+..-.+...|+-++.+.-. +.+...... . ...+..|+|+|++.+=|++.
T Consensus 329 ~~aF~~v~sslswfi~~~~~ia~~rA~~~Rl~~f~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nl~l~~p~~~-- 406 (604)
T COG4178 329 VGAFGQVHSSLSWFIDNYDAIADWRATLLRLAEFRQALEAAQMDTEKPARTGRRIDFDDNADHGITLENLSLRTPDGQ-- 406 (604)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccCcccccCcccccccccccccceeEEeeeeEECCCCC--
Confidence 888888888999999989999888889999877764222 111111100 0 01157899999999998764
Q ss_pred cccccceeeeeCCCEEEEECCCCCCHHHHHHHHhhccCCCCCCC
Q 001438 1034 VIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKA 1077 (1077)
Q Consensus 1034 ~VLk~vsl~I~~GekVaIVGrTGsGKSTLi~lL~Rfyd~~~G~i 1077 (1077)
+.|+++||+|+|||.+=|.|+||||||||+.+|.++|+--+|+|
T Consensus 407 ~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I 450 (604)
T COG4178 407 TLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRI 450 (604)
T ss_pred eeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCce
Confidence 46999999999999999999999999999999999999998875
No 437
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.75 E-value=1.1e-17 Score=179.93 Aligned_cols=199 Identities=28% Similarity=0.431 Sum_probs=146.4
Q ss_pred CCcccEEEEeEEEEcCCCC-----------------------CcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcc
Q 001438 377 KLSGHIEFKDVSFCYPSRP-----------------------DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERF 433 (1077)
Q Consensus 377 ~~~~~i~~~~v~~~y~~~~-----------------------~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~ 433 (1077)
+..+.+.++|++..|.+.. ...+|+|+||+|+||+.++|+|+|||||||++++|+|.
T Consensus 353 ~L~~p~~~~~v~k~faS~ld~~~lp~e~~~IleSFGv~~r~ieryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~ 432 (593)
T COG2401 353 KLEGPIKFKNVTKTFASELDIKGLPNEFQDILESFGVRQRVIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGA 432 (593)
T ss_pred ccCCccccceeeeeeeeeeecccCChHHHHHHHHhcchheeeeeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHH
Confidence 3456688888888774311 23579999999999999999999999999999999986
Q ss_pred --------cCCCccEEEECCeeCCCCCHHHHhhheeEEccC--CCcccccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHH
Q 001438 434 --------YEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQE--PALFATTIRENILYGKDDATMEEITRAAKLSEAMSFI 503 (1077)
Q Consensus 434 --------~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~--~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i 503 (1077)
|.|++|.|.+--..+ -+.+|-+ |.+=.-|+.|.+.- ..-+.....+.+..+++.|-+
T Consensus 433 ~~~~~ee~y~p~sg~v~vp~nt~-----------~a~iPge~Ep~f~~~tilehl~s--~tGD~~~AveILnraGlsDAv 499 (593)
T COG2401 433 QKGRGEEKYRPDSGKVEVPKNTV-----------SALIPGEYEPEFGEVTILEHLRS--KTGDLNAAVEILNRAGLSDAV 499 (593)
T ss_pred hhcccccccCCCCCceeccccch-----------hhccCcccccccCchhHHHHHhh--ccCchhHHHHHHHhhccchhh
Confidence 579999997743322 2334443 33323388777642 111212223333333332221
Q ss_pred hcCccchhhhhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEccCchh
Q 001438 504 SNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLST 581 (1077)
Q Consensus 504 ~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~vtH~~~~ 581 (1077)
.--.+-..||-|||-|..||+++..+|.+++.||.-|.||..|...+...|.++. .+.|.++||||.+.
T Consensus 500 ---------lyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkiselaRe~giTlivvThrpEv 570 (593)
T COG2401 500 ---------LYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVVTHRPEV 570 (593)
T ss_pred ---------hhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHHH
Confidence 1123445799999999999999999999999999999999999999999998875 58999999999999
Q ss_pred Hhh--cCEEEEEECCEEE
Q 001438 582 IRN--ADVIAVVQGRKIV 597 (1077)
Q Consensus 582 ~~~--~d~i~~l~~G~i~ 597 (1077)
... -|+++.+.=|++.
T Consensus 571 ~~AL~PD~li~vgYg~v~ 588 (593)
T COG2401 571 GNALRPDTLILVGYGKVP 588 (593)
T ss_pred HhccCCceeEEeeccccc
Confidence 864 6999888766654
No 438
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.74 E-value=2.3e-17 Score=213.18 Aligned_cols=211 Identities=19% Similarity=0.312 Sum_probs=144.0
Q ss_pred cccceeEEecCCcEEEEEcCCCCcHHHHHHHHh-c----c----cCCCccEEEECCeeCCCCC----------HHHHhhh
Q 001438 399 IFDKFCLDIPAGKIVALVGGSGSGKSTVISLIE-R----F----YEPLSGEILLDGNNIKGLD----------LKWLRQQ 459 (1077)
Q Consensus 399 ~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~-g----~----~~~~~G~i~~~g~~~~~~~----------~~~~r~~ 459 (1077)
-|+|++.+|+-|.+++|.|.||||||||++-.+ . . .+..+--|.||-.+|..-+ .+.+|+-
T Consensus 1505 NLk~v~v~iPlg~l~~vTGVSGSGKStLi~~~l~~~l~~~l~~g~~~~~~vi~vdQspIgrt~RS~paTY~g~fd~IR~l 1584 (1809)
T PRK00635 1505 TIQNLNVSAPLHSLVAISGVSGSGKTSLLLEGFYKQACALIEKGPSVFSEIIFLDSHPQISSQRSDISTYFDIAPSLRNF 1584 (1809)
T ss_pred cCCcceeeccCCcEEEEeCCCCCcHHHHHHHHHHHHHHHHhcccccccCcEEEEeCCCCCCCCCCchhhhhhhHHHHHHH
Confidence 389999999999999999999999999997544 1 1 1223344777777764322 1344544
Q ss_pred eeEEcc------CCCcccc--------------cHHHHHhcCC-----------------------CCCCHHHH-----H
Q 001438 460 IGLVNQ------EPALFAT--------------TIRENILYGK-----------------------DDATMEEI-----T 491 (1077)
Q Consensus 460 i~~v~Q------~~~lf~~--------------ti~~ni~~~~-----------------------~~~~~~~~-----~ 491 (1077)
.+-.|+ .|..|+- .++=++.|-. ...+-.++ .
T Consensus 1585 FA~~~~ak~rg~~~~~FSfN~~~GrC~~C~G~G~i~i~m~fl~dv~~~C~~C~G~R~~~e~L~v~~~gk~I~dvL~mtv~ 1664 (1809)
T PRK00635 1585 YASLTQAKALNISASMFSTNTKQGQCSDCWGLGYQWIDRAFYALEKRPCPTCSGFRIQPLAQEVVYEGKHFGQLLQTPIE 1664 (1809)
T ss_pred HhcCHHHHHcCCCcccccccCCCCCCCCCccCceEEEecccCCCcccCCCCCCCcCCCHHHHhheeCCCCHHHHhcCCHH
Confidence 332221 1111211 1111111100 00000111 1
Q ss_pred HH-------HHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccC---CCEEEEeCcCCCCCHHHHHHHHH
Q 001438 492 RA-------AKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKN---PSILLLDEATSALDAESENSVQE 561 (1077)
Q Consensus 492 ~~-------~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~---p~illlDEpts~lD~~~~~~i~~ 561 (1077)
+| .++...++.+..+--||- .+|+...+|||||.|||-||.-|.++ +.++||||||.+|+++.-+.+.+
T Consensus 1665 ea~~~F~~~~~i~~~L~~L~~vGLgYl-~LGq~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d~~~Ll~ 1743 (1809)
T PRK00635 1665 EVAETFPFLKKIQKPLQALIDNGLGYL-PLGQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALLV 1743 (1809)
T ss_pred HHHHHhhccHHHHHHHHHHHHcCCCee-eCCCcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHHHHHHHH
Confidence 11 112222233333433543 36899999999999999999999876 78999999999999999999999
Q ss_pred HHHHH-hCCCeEEEEccCchhHhhcCEEEEE------ECCEEEEecChhHHhcCCC
Q 001438 562 ALDRV-MVGRTTVVVAHRLSTIRNADVIAVV------QGRKIVKTGSHEELISNPN 610 (1077)
Q Consensus 562 ~l~~~-~~~~t~i~vtH~~~~~~~~d~i~~l------~~G~i~~~g~~~~l~~~~~ 610 (1077)
.+.++ .+|.|+|+|.|+++.++.||+|+-| +.|+|+.+|+|+++.++++
T Consensus 1744 ~l~~L~~~g~tvivieH~~~~i~~aD~iidlgp~gG~~GG~iva~Gtp~~i~~~~~ 1799 (1809)
T PRK00635 1744 QLRTLVSLGHSVIYIDHDPALLKQADYLIEMGPGSGKTGGKILFSGPPKDISASKD 1799 (1809)
T ss_pred HHHHHHhcCCeEEEEeCCHHHHHhCCEEEEcCCCcccCCCEEEEEeCHHHHhhCCC
Confidence 99887 4799999999999999999999999 5689999999999987644
No 439
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.73 E-value=2.4e-17 Score=191.84 Aligned_cols=97 Identities=32% Similarity=0.573 Sum_probs=90.1
Q ss_pred hhcCCCCCCChHHHHHHHHHHHhccCC---CEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHhhcCEE
Q 001438 513 QVGERGIQLSGGQKQRIAISRAIVKNP---SILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRNADVI 588 (1077)
Q Consensus 513 ~~~~~g~~LSgGqkqri~lARal~~~p---~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~~d~i 588 (1077)
.+|+...+|||||.|||-||.-|.++. -++||||||.+|-.+--+++++.|.++. +|.|||+|-|+|+.++.||.|
T Consensus 815 ~LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd~GnTViVIEHNLdVIk~AD~I 894 (935)
T COG0178 815 KLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIEHNLDVIKTADWI 894 (935)
T ss_pred ecCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecccceEeecCEE
Confidence 468888999999999999999999988 9999999999999999999999998874 799999999999999999999
Q ss_pred EEE------ECCEEEEecChhHHhcCC
Q 001438 589 AVV------QGRKIVKTGSHEELISNP 609 (1077)
Q Consensus 589 ~~l------~~G~i~~~g~~~~l~~~~ 609 (1077)
+=| +.|+|+.+|+|+|+.+.+
T Consensus 895 IDLGPeGG~~GG~iva~GTPeeva~~~ 921 (935)
T COG0178 895 IDLGPEGGDGGGEIVASGTPEEVAKVK 921 (935)
T ss_pred EEcCCCCCCCCceEEEecCHHHHHhCc
Confidence 988 578999999999998764
No 440
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=99.73 E-value=1.7e-17 Score=177.69 Aligned_cols=199 Identities=19% Similarity=0.251 Sum_probs=133.9
Q ss_pred EEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEE--EECCeeCCCCCHHHHhhhe--eEEccCCCcccccHHHHHhc
Q 001438 405 LDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI--LLDGNNIKGLDLKWLRQQI--GLVNQEPALFATTIRENILY 480 (1077)
Q Consensus 405 l~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i--~~~g~~~~~~~~~~~r~~i--~~v~Q~~~lf~~ti~~ni~~ 480 (1077)
+.+.+||.++|+||+|+|||||++.+.+.++...+.+ .+-...-+..+..++.+.+ .+|-.+. +.+....+..
T Consensus 11 ~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~---~~~~~~~~~~ 87 (249)
T cd01128 11 APIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTF---DEPPERHVQV 87 (249)
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHhccEEEEecC---CCCHHHHHHH
Confidence 4889999999999999999999999999887764333 2221111123444444333 0000000 0000000000
Q ss_pred CCCCCCHHHHHHHHHHH-------hHHHHHhcCccchhhhhcCCCCCCChHH--------HHHHHHHHHhccCCCEEEEe
Q 001438 481 GKDDATMEEITRAAKLS-------EAMSFISNLPERFETQVGERGIQLSGGQ--------KQRIAISRAIVKNPSILLLD 545 (1077)
Q Consensus 481 ~~~~~~~~~~~~~~~~~-------~~~~~i~~l~~g~~t~~~~~g~~LSgGq--------kqri~lARal~~~p~illlD 545 (1077)
.+.....+.... -..|.+.+++.++++..++.|..+|||| +||+++||++.++++|.+|
T Consensus 88 -----~~~~~~~a~~~~~~G~~vll~iDei~r~a~a~~ev~~~~G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l- 161 (249)
T cd01128 88 -----AEMVLEKAKRLVEHGKDVVILLDSITRLARAYNTVVPPSGKILSGGVDANALHKPKRFFGAARNIEEGGSLTII- 161 (249)
T ss_pred -----HHHHHHHHHHHHHCCCCEEEEEECHHHhhhhhhhccccCCCCCCCCcChhhhhhhHHHHHHhcCCCCCCceEEe-
Confidence 000011111110 0123466788999999999999999999 9999999999999999999
Q ss_pred CcCCCCCHHHHHH-HHHHHHHHh-CCCeEEEEccCchhHhhcCEEEEEECCEEEEecChhHHhcCCCchHHHHHHHHH
Q 001438 546 EATSALDAESENS-VQEALDRVM-VGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAALVQLQE 621 (1077)
Q Consensus 546 Epts~lD~~~~~~-i~~~l~~~~-~~~t~i~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~ 621 (1077)
||+.+|+.++.. ++ +..+. .++|.|+++|++....++|.|.||+.|++ +++++.. ++.|..+...+.
T Consensus 162 -~T~~~d~~~~~~~~i--~~~~~~~~~~~ivls~~la~~~~~paI~vl~s~sr-----~~~ll~~-~~~~~~~~~~r~ 230 (249)
T cd01128 162 -ATALVDTGSRMDDVI--FEEFKGTGNMELVLDRRLAERRIFPAIDILKSGTR-----KEELLLD-PEELQRMWLLRR 230 (249)
T ss_pred -eeheecCCCcccchH--HHHHhcCCCcEEEEchHHhhCCCCCeEEEcCCCCc-----cchhhCC-HHHHHHHHHHHH
Confidence 999999765543 43 34443 57899999999999999999999999997 6777765 567776655443
No 441
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.72 E-value=2.5e-17 Score=166.81 Aligned_cols=136 Identities=24% Similarity=0.331 Sum_probs=100.3
Q ss_pred eeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhheeE-EccCCCcccccHHHHHhcC
Q 001438 403 FCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGL-VNQEPALFATTIRENILYG 481 (1077)
Q Consensus 403 isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~-v~Q~~~lf~~ti~~ni~~~ 481 (1077)
.++.+.++.++.|+|||||||||+++.+.-..-..+|.+.... +. +.++ +++...-|
T Consensus 14 ~~i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~-~~----------~~g~~~~~~~~~~----------- 71 (162)
T cd03227 14 NDVTFGEGSLTIITGPNGSGKSTILDAIGLALGGAQSATRRRS-GV----------KAGCIVAAVSAEL----------- 71 (162)
T ss_pred cEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHhcchhhhccC-cc----------cCCCcceeeEEEE-----------
Confidence 3344555679999999999999999997766555555443311 00 1111 11111101
Q ss_pred CCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhcc----CCCEEEEeCcCCCCCHHHHH
Q 001438 482 KDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVK----NPSILLLDEATSALDAESEN 557 (1077)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~----~p~illlDEpts~lD~~~~~ 557 (1077)
+ -+. .+||+||+||++|||++.. +|+++|+|||++++|+....
T Consensus 72 ---------------------i-------~~~-----~~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~ 118 (162)
T cd03227 72 ---------------------I-------FTR-----LQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQ 118 (162)
T ss_pred ---------------------e-------hhe-----eeccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHH
Confidence 0 000 1299999999999999986 78999999999999999999
Q ss_pred HHHHHHHHHh-CCCeEEEEccCchhHhhcCEEEEEEC
Q 001438 558 SVQEALDRVM-VGRTTVVVAHRLSTIRNADVIAVVQG 593 (1077)
Q Consensus 558 ~i~~~l~~~~-~~~t~i~vtH~~~~~~~~d~i~~l~~ 593 (1077)
.+.+.+.+.. ++.++|++||+.+....+|+++.|+.
T Consensus 119 ~l~~~l~~~~~~~~~vii~TH~~~~~~~~d~~~~l~~ 155 (162)
T cd03227 119 ALAEAILEHLVKGAQVIVITHLPELAELADKLIHIKK 155 (162)
T ss_pred HHHHHHHHHHhcCCEEEEEcCCHHHHHhhhhEEEEEE
Confidence 9999888764 46899999999999999999999965
No 442
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.67 E-value=5.3e-16 Score=170.70 Aligned_cols=190 Identities=18% Similarity=0.248 Sum_probs=117.2
Q ss_pred ccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCC----------------C-----------------------cc-
Q 001438 400 FDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEP----------------L-----------------------SG- 439 (1077)
Q Consensus 400 l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~----------------~-----------------------~G- 439 (1077)
+++.++++.+| +.+|+|||||||||++.+|.-+... + +|
T Consensus 12 ~~~~~~~~~~~-~~~i~G~NGsGKS~ll~Ai~~~~~~~~~r~~~~~~~i~~~~~~~~v~~~f~~~~~~~~i~~~~~~~~~ 90 (270)
T cd03242 12 YAELELEFEPG-VTVLVGENAQGKTNLLEAISLLATGKSHRTSRDKELIRWGAEEAKISAVLERQGGELALELTIRSGGG 90 (270)
T ss_pred cceeEEecCCC-eEEEECCCCCCHHHHHHHHHHhccCCCCCCCCHHHHHhcCCCCEEEEEEEEeCCCeEEEEEEEEcCCc
Confidence 45567777776 7899999999999999887533311 0 11
Q ss_pred -EEEECCeeCCCCCHHHHh---hheeEEccCCCccccc------HHHHHhcCCCCCCHHHHH-HHHHHHhHHHHHhcCcc
Q 001438 440 -EILLDGNNIKGLDLKWLR---QQIGLVNQEPALFATT------IRENILYGKDDATMEEIT-RAAKLSEAMSFISNLPE 508 (1077)
Q Consensus 440 -~i~~~g~~~~~~~~~~~r---~~i~~v~Q~~~lf~~t------i~~ni~~~~~~~~~~~~~-~~~~~~~~~~~i~~l~~ 508 (1077)
.+.+||..++. ..++. ..|.+.|++..|+.++ +.|.+.... ...+.+.. +..+.....+.+..-|+
T Consensus 91 ~~~~ing~~~~~--l~~l~~~l~~i~~~~~~~~l~~~~p~~rr~~lD~~~~~~-~~~y~~~~~~~~~~~~~~~~~~~g~~ 167 (270)
T cd03242 91 RKARLNGIKVRR--LSDLLGVLNAVWFAPEDLELVKGSPADRRRFLDRLLGQL-EPAYAHVLSEYQKALRQRNALLKGPH 167 (270)
T ss_pred eEEEECCeeccC--HHHHhCcCcEEEEecchhhhhcCCHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 23455555433 23332 3466667666777432 222222211 11121111 11111111111222355
Q ss_pred chhhhhcCCC----CCCChHHHHHHHHHHHhc---------cCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEE
Q 001438 509 RFETQVGERG----IQLSGGQKQRIAISRAIV---------KNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVV 575 (1077)
Q Consensus 509 g~~t~~~~~g----~~LSgGqkqri~lARal~---------~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~v 575 (1077)
.++..+.-++ ..+|+||||+++|||+++ .+|+++||||||++||+...+.+.+.+.+.. .++++
T Consensus 168 ~d~l~~~vd~~~~~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~~---q~ii~ 244 (270)
T cd03242 168 RDDLLFFLNDKPAADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGRV---QTFVT 244 (270)
T ss_pred hhheEEEECCEeHHHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcCC---CEEEE
Confidence 5554433222 348999999999999984 7999999999999999999999999987652 45666
Q ss_pred ccCchhHhh-c---CEEEEEECCEE
Q 001438 576 AHRLSTIRN-A---DVIAVVQGRKI 596 (1077)
Q Consensus 576 tH~~~~~~~-~---d~i~~l~~G~i 596 (1077)
+|+...+.. | ++|+.+++|+|
T Consensus 245 ~~~~~~~~~~~~~~~~i~~l~~g~i 269 (270)
T cd03242 245 TTDLADFDALWLRRAQIFRVDAGTL 269 (270)
T ss_pred eCCchhccchhccCccEEEEeCcEE
Confidence 666555543 5 78999999986
No 443
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.67 E-value=2.2e-16 Score=167.64 Aligned_cols=152 Identities=20% Similarity=0.187 Sum_probs=110.3
Q ss_pred cccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhee-EEccCCCcccccHH
Q 001438 397 VAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG-LVNQEPALFATTIR 475 (1077)
Q Consensus 397 ~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~-~v~Q~~~lf~~ti~ 475 (1077)
..+.+|++++.++|++++|.|||||||||+++.+.- -.+-.++| |||.+...++ +.
T Consensus 17 ~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~---------------------~~~la~~g~~vpa~~~~~~--~~ 73 (222)
T cd03285 17 AFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGV---------------------IVLMAQIGCFVPCDSADIP--IV 73 (222)
T ss_pred CeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHH---------------------HHHHHHhCCCcCcccEEEe--cc
Confidence 357899999999999999999999999999999882 12233566 6776543221 11
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHh--ccCCCEEEEeCc---CCC
Q 001438 476 ENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAI--VKNPSILLLDEA---TSA 550 (1077)
Q Consensus 476 ~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal--~~~p~illlDEp---ts~ 550 (1077)
|.|. ..+... +. ....+|.|++|+..+++++ +.+|+++||||| |++
T Consensus 74 ~~il------------------------~~~~l~-d~----~~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~ 124 (222)
T cd03285 74 DCIL------------------------ARVGAS-DS----QLKGVSTFMAEMLETAAILKSATENSLIIIDELGRGTST 124 (222)
T ss_pred ceeE------------------------eeeccc-cc----hhcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCCh
Confidence 1111 011100 01 1246999999999999999 899999999999 999
Q ss_pred CCHHHHHHH-HHHHHHHhCCCeEEEEccCchhHhhcCEEEEEECCEEEEecC
Q 001438 551 LDAESENSV-QEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGS 601 (1077)
Q Consensus 551 lD~~~~~~i-~~~l~~~~~~~t~i~vtH~~~~~~~~d~i~~l~~G~i~~~g~ 601 (1077)
+|+...... .+.+.+ ..++++|++||..+..+.||++..+++|++...++
T Consensus 125 lD~~~~~~~il~~l~~-~~~~~vlisTH~~el~~~~~~~~~i~~g~~~~~~~ 175 (222)
T cd03285 125 YDGFGLAWAIAEYIAT-QIKCFCLFATHFHELTALADEVPNVKNLHVTALTD 175 (222)
T ss_pred HHHHHHHHHHHHHHHh-cCCCeEEEEechHHHHHHhhcCCCeEEEEEEEEEe
Confidence 999866543 344443 34789999999644555699999999999987653
No 444
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.63 E-value=1.3e-15 Score=189.92 Aligned_cols=95 Identities=33% Similarity=0.525 Sum_probs=88.4
Q ss_pred hcCCCCCCChHHHHHHHHHHHhccCC--CEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHhhcCEEEE
Q 001438 514 VGERGIQLSGGQKQRIAISRAIVKNP--SILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRNADVIAV 590 (1077)
Q Consensus 514 ~~~~g~~LSgGqkqri~lARal~~~p--~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~~d~i~~ 590 (1077)
.+....+|||||||||+|||||..+| ++|||||||++||++..+.+.+.|+++. +|.|+|+|+|+++.+..||+|++
T Consensus 483 l~r~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~~~~i~~aD~vi~ 562 (943)
T PRK00349 483 LSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHDEDTIRAADYIVD 562 (943)
T ss_pred CCCchhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEE
Confidence 46677899999999999999999997 9999999999999999999999999875 48999999999999988999999
Q ss_pred E------ECCEEEEecChhHHhcC
Q 001438 591 V------QGRKIVKTGSHEELISN 608 (1077)
Q Consensus 591 l------~~G~i~~~g~~~~l~~~ 608 (1077)
| ++|+|+..|+++++...
T Consensus 563 LgpgaG~~~G~iv~~g~~~e~~~~ 586 (943)
T PRK00349 563 IGPGAGVHGGEVVASGTPEEIMKN 586 (943)
T ss_pred eccccCCCCCEEeeccCHHHHhcC
Confidence 9 99999999999998654
No 445
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.63 E-value=1.4e-15 Score=189.18 Aligned_cols=95 Identities=32% Similarity=0.526 Sum_probs=88.3
Q ss_pred hcCCCCCCChHHHHHHHHHHHhccCC--CEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHhhcCEEEE
Q 001438 514 VGERGIQLSGGQKQRIAISRAIVKNP--SILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRNADVIAV 590 (1077)
Q Consensus 514 ~~~~g~~LSgGqkqri~lARal~~~p--~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~~d~i~~ 590 (1077)
.+....+|||||+||+.|||||..+| ++|||||||++||++..+.+.+.|+++. +|.|+|+|+|+++.+..||+|++
T Consensus 481 l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~~~i~~aD~vi~ 560 (924)
T TIGR00630 481 LSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDEETIRAADYVID 560 (924)
T ss_pred cCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHhhCCEEEE
Confidence 46778899999999999999999986 8999999999999999999999999875 58999999999999999999999
Q ss_pred E------ECCEEEEecChhHHhcC
Q 001438 591 V------QGRKIVKTGSHEELISN 608 (1077)
Q Consensus 591 l------~~G~i~~~g~~~~l~~~ 608 (1077)
| ++|+|++.|+++++...
T Consensus 561 LgpgaG~~~G~Iv~~g~~~el~~~ 584 (924)
T TIGR00630 561 IGPGAGIHGGEVVASGTPEEILAN 584 (924)
T ss_pred ecccccCCCCEEeeccCHHHHhcC
Confidence 9 99999999999998654
No 446
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.62 E-value=6.5e-16 Score=162.69 Aligned_cols=153 Identities=14% Similarity=0.157 Sum_probs=103.1
Q ss_pred ceeEEecCCcEEEEEcCCCCcHHHHHHHHhcc-cCCCccEEEECCeeCCCCCHHHHhhheeEEccCCCcccccHHHHHhc
Q 001438 402 KFCLDIPAGKIVALVGGSGSGKSTVISLIERF-YEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILY 480 (1077)
Q Consensus 402 ~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~-~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~ 480 (1077)
..++++.+|++++|+||||||||||+++|.+. +.+..|.... . .+..+++..|....|+ ..+
T Consensus 21 ~~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~-~----------~~~~i~~~dqi~~~~~--~~d---- 83 (202)
T cd03243 21 PNDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVP-A----------ESASIPLVDRIFTRIG--AED---- 83 (202)
T ss_pred eeeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHHHHcCCCcc-c----------cccccCCcCEEEEEec--Ccc----
Confidence 34556678999999999999999999999943 3223332110 0 0112333222111110 000
Q ss_pred CCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHH
Q 001438 481 GKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQ 560 (1077)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~p~illlDEpts~lD~~~~~~i~ 560 (1077)
.+.++-..++++++| +..+.+...+|+++|+|||++++|+.....+.
T Consensus 84 --------------------------------~i~~~~s~~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~~~~~~l~ 130 (202)
T cd03243 84 --------------------------------SISDGRSTFMAELLE-LKEILSLATPRSLVLIDELGRGTSTAEGLAIA 130 (202)
T ss_pred --------------------------------cccCCceeHHHHHHH-HHHHHHhccCCeEEEEecCCCCCCHHHHHHHH
Confidence 111223456666665 66667778999999999999999999877665
Q ss_pred HH-HHHHh-CCCeEEEEccCchhHhhcCEEEEEECCEEEEecChhH
Q 001438 561 EA-LDRVM-VGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEE 604 (1077)
Q Consensus 561 ~~-l~~~~-~~~t~i~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~ 604 (1077)
.. ++.+. .+.++|++||+.+.+..+|++..+++|++.+.++..+
T Consensus 131 ~~ll~~l~~~~~~vi~~tH~~~~~~~~~~~~~l~~~~~~~~~~~~~ 176 (202)
T cd03243 131 YAVLEHLLEKGCRTLFATHFHELADLPEQVPGVKNLHMEELITTGG 176 (202)
T ss_pred HHHHHHHHhcCCeEEEECChHHHHHHhhcCCCeEEEEEEEEecCCe
Confidence 44 44443 4789999999999999999999999999988876433
No 447
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.61 E-value=1e-15 Score=159.78 Aligned_cols=136 Identities=15% Similarity=0.225 Sum_probs=93.9
Q ss_pred ccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhheeEEccCCCcccc-cHHH
Q 001438 398 AIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFAT-TIRE 476 (1077)
Q Consensus 398 ~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~-ti~~ 476 (1077)
++++|++++. |++++|+||||||||||+++|.|... +...|.++.. -.+++|...+|.. |++|
T Consensus 15 ~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~-----l~~~G~~v~a---------~~~~~q~~~l~~~~~~~d 78 (199)
T cd03283 15 RVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVI-----LAQAGAPVCA---------SSFELPPVKIFTSIRVSD 78 (199)
T ss_pred eecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHH-----HHHcCCEEec---------CccCcccceEEEeccchh
Confidence 5778887664 79999999999999999999987543 1235555432 1356675566655 9999
Q ss_pred HHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHH
Q 001438 477 NILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESE 556 (1077)
Q Consensus 477 ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~p~illlDEpts~lD~~~~ 556 (1077)
|+.++.... ..+.. +...+ ++.+. ..+|+++|+|||++++|+...
T Consensus 79 ~l~~~~s~~-~~e~~---~~~~i---L~~~~----------------------------~~~p~llllDEp~~glD~~~~ 123 (199)
T cd03283 79 DLRDGISYF-YAELR---RLKEI---VEKAK----------------------------KGEPVLFLLDEIFKGTNSRER 123 (199)
T ss_pred ccccccChH-HHHHH---HHHHH---HHhcc----------------------------CCCCeEEEEecccCCCCHHHH
Confidence 998875321 12221 11222 22111 079999999999999999988
Q ss_pred HHHHH-HHHHH-hCCCeEEEEccCchhHhh
Q 001438 557 NSVQE-ALDRV-MVGRTTVVVAHRLSTIRN 584 (1077)
Q Consensus 557 ~~i~~-~l~~~-~~~~t~i~vtH~~~~~~~ 584 (1077)
..+.. .++.+ .++.|+|++||+++.+..
T Consensus 124 ~~l~~~ll~~l~~~~~tiiivTH~~~~~~~ 153 (199)
T cd03283 124 QAASAAVLKFLKNKNTIGIISTHDLELADL 153 (199)
T ss_pred HHHHHHHHHHHHHCCCEEEEEcCcHHHHHh
Confidence 76644 45554 357899999999987654
No 448
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.60 E-value=1.1e-15 Score=164.86 Aligned_cols=191 Identities=24% Similarity=0.380 Sum_probs=128.6
Q ss_pred cEEEEeEEEEcCCCCCcccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcc--cCCCccEEEECCeeCCCCCHHHHhh
Q 001438 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERF--YEPLSGEILLDGNNIKGLDLKWLRQ 458 (1077)
Q Consensus 381 ~i~~~~v~~~y~~~~~~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~--~~~~~G~i~~~g~~~~~~~~~~~r~ 458 (1077)
.|.++|.+.+-.+ +..+.|-||.|-.|..+++|||||-|||||++-|..- --|..=.
T Consensus 264 DIKiEnF~ISA~G---k~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnID------------------ 322 (807)
T KOG0066|consen 264 DIKIENFDISAQG---KLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNID------------------ 322 (807)
T ss_pred cceeeeeeeeccc---ceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCCCc------------------
Confidence 4778887776543 3478899999999999999999999999999988742 2222222
Q ss_pred heeEEccCCCcccccHHHHHhc---------------------CCCC--CCHHHHHHHHHH-------HhHHHHHhcCcc
Q 001438 459 QIGLVNQEPALFATTIRENILY---------------------GKDD--ATMEEITRAAKL-------SEAMSFISNLPE 508 (1077)
Q Consensus 459 ~i~~v~Q~~~lf~~ti~~ni~~---------------------~~~~--~~~~~~~~~~~~-------~~~~~~i~~l~~ 508 (1077)
+-||-|+...-+.|.-+.++- |... .+.+++...++. +.+...+..|
T Consensus 323 -vLlCEQEvvad~t~Ai~tvl~aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELraiGA~sAEarARRILAGL-- 399 (807)
T KOG0066|consen 323 -VLLCEQEVVADSTSAIDTVLKADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIGADSAEARARRILAGL-- 399 (807)
T ss_pred -eEeeeeeeeecCcHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhccccchhHHHHHHhhc--
Confidence 334444433322222222211 1000 000011110110 1111112222
Q ss_pred chhhhhcCCCC-CCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhh-cC
Q 001438 509 RFETQVGERGI-QLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-AD 586 (1077)
Q Consensus 509 g~~t~~~~~g~-~LSgGqkqri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~-~d 586 (1077)
|++..+.+++. .+|||-|-||+|||||+..|-+|.|||||.+||....--+-+.|..+ .+|.++|+|+-.++.. |.
T Consensus 400 GFskEMQ~rPt~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgW--kKTLLIVSHDQgFLD~VCt 477 (807)
T KOG0066|consen 400 GFSKEMQERPTTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQGFLDSVCT 477 (807)
T ss_pred CCChhHhcCCccccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhh--hheeEEEecccchHHHHHH
Confidence 56666666665 59999999999999999999999999999999998777777777665 4799999999999987 99
Q ss_pred EEEEEECCEEE
Q 001438 587 VIAVVQGRKIV 597 (1077)
Q Consensus 587 ~i~~l~~G~i~ 597 (1077)
.|+.|++-++.
T Consensus 478 dIIHLD~qkLh 488 (807)
T KOG0066|consen 478 DIIHLDNQKLH 488 (807)
T ss_pred HHhhhhhhhhh
Confidence 99999987653
No 449
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=99.58 E-value=1.5e-15 Score=138.67 Aligned_cols=75 Identities=19% Similarity=0.168 Sum_probs=70.8
Q ss_pred ccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhheeEEccCCCcccccHHHH
Q 001438 398 AIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIREN 477 (1077)
Q Consensus 398 ~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~n 477 (1077)
++|++++|++++||.++|+||||||||||++++. +|++.++|.|+..++.++.++.++++||+ +|.+||+||
T Consensus 3 ~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~------~G~i~~~g~di~~~~~~~~~~~~~~~~q~--lf~~ti~~N 74 (107)
T cd00820 3 TSLHGVLVDVYGKVGVLITGDSGIGKTELALELI------KRKHRLVGDDNVEIREDSKDELIGRNPEL--GLEIRLRLN 74 (107)
T ss_pred eEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh------CCeEEEeeEeHHHhhhhhcCCEEEEechh--cchhhHHhh
Confidence 5899999999999999999999999999999986 89999999999999988888889999988 999999999
Q ss_pred Hhc
Q 001438 478 ILY 480 (1077)
Q Consensus 478 i~~ 480 (1077)
|.+
T Consensus 75 i~~ 77 (107)
T cd00820 75 IFL 77 (107)
T ss_pred cee
Confidence 987
No 450
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=99.58 E-value=1e-14 Score=158.01 Aligned_cols=142 Identities=19% Similarity=0.291 Sum_probs=103.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCC-HHHHhhheeEEccCCCcccccHHHHHhcCCCCCCHHH
Q 001438 411 KIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLD-LKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEE 489 (1077)
Q Consensus 411 ~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~-~~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~~~~~~~ 489 (1077)
+.++|+||+|||||||+++|+|++.|.+|+|.++|+++...+ ..++...++++||+..--..++.||. +
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~----~------ 181 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGC----P------ 181 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhcccccccccccccccccc----h------
Confidence 678999999999999999999999999999999999998765 46777778999996532222444431 0
Q ss_pred HHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCC
Q 001438 490 ITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVG 569 (1077)
Q Consensus 490 ~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~ 569 (1077)
++. | ...++|+ .+|+++++|||++ .+.+...++.+..|
T Consensus 182 --k~~-----------------------------~---~~~~i~~--~~P~villDE~~~------~e~~~~l~~~~~~G 219 (270)
T TIGR02858 182 --KAE-----------------------------G---MMMLIRS--MSPDVIVVDEIGR------EEDVEALLEALHAG 219 (270)
T ss_pred --HHH-----------------------------H---HHHHHHh--CCCCEEEEeCCCc------HHHHHHHHHHHhCC
Confidence 000 0 1344555 4999999999974 23344444444579
Q ss_pred CeEEEEccCchh--H------------hhcCEEEEEECCEEEEecChhHHh
Q 001438 570 RTTVVVAHRLST--I------------RNADVIAVVQGRKIVKTGSHEELI 606 (1077)
Q Consensus 570 ~t~i~vtH~~~~--~------------~~~d~i~~l~~G~i~~~g~~~~l~ 606 (1077)
.|+|++||+.+. + ..+||+++|++|+ ..|+++++.
T Consensus 220 ~~vI~ttH~~~~~~~~~r~~~~~l~~~~~~~r~i~L~~~~--~~g~~~~i~ 268 (270)
T TIGR02858 220 VSIIATAHGRDVEDLYKRPVFKELIENEAFERYVVLSRRK--GPGTVEAVY 268 (270)
T ss_pred CEEEEEechhHHHHHHhChHHHHHHhcCceEEEEEEecCC--CCCceeecc
Confidence 999999997654 3 3389999999887 667766653
No 451
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.53 E-value=5.3e-14 Score=152.55 Aligned_cols=181 Identities=27% Similarity=0.424 Sum_probs=133.0
Q ss_pred EEcCCCCCcccccceeEEecCCc-----EEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhheeEE
Q 001438 389 FCYPSRPDVAIFDKFCLDIPAGK-----IVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLV 463 (1077)
Q Consensus 389 ~~y~~~~~~~~l~~isl~i~~g~-----~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v 463 (1077)
++||+. +..+.+..|.|+.|+ ++..+|.||.||||++++++|..+|++|. ++..+ .++|=
T Consensus 343 y~Yp~m--~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~~~------e~p~l-------nVSyk 407 (592)
T KOG0063|consen 343 YSYPKM--KKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEGG------EIPVL-------NVSYK 407 (592)
T ss_pred eccCcc--eeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCccC------ccccc-------ceecc
Confidence 567754 346789999999875 68899999999999999999999998762 22222 48888
Q ss_pred ccCCC-cccccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccCCCEE
Q 001438 464 NQEPA-LFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSIL 542 (1077)
Q Consensus 464 ~Q~~~-lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~p~il 542 (1077)
||.-. =+.+|+|+-+.- +++.+..--.....+. -|-..+..+++...+||||+.||++||-++=+.++++
T Consensus 408 pqkispK~~~tvR~ll~~--------kIr~ay~~pqF~~dvm-kpL~ie~i~dqevq~lSggelQRval~KOGGKpAdvY 478 (592)
T KOG0063|consen 408 PQKISPKREGTVRQLLHT--------KIRDAYMHPQFVNDVM-KPLQIENIIDQEVQGLSGGELQRVALALCLGKPADVY 478 (592)
T ss_pred ccccCccccchHHHHHHH--------HhHhhhcCHHHHHhhh-hhhhHHHHHhHHhhcCCchhhHHHHHHHhcCCCCceE
Confidence 88743 477899886531 1111111111111111 1222334455667799999999999999999999999
Q ss_pred EEeCcCCCCCHHHHHHHHHHHHHH--hCCCeEEEEccCchhHhh-cCEEEEEEC
Q 001438 543 LLDEATSALDAESENSVQEALDRV--MVGRTTVVVAHRLSTIRN-ADVIAVVQG 593 (1077)
Q Consensus 543 llDEpts~lD~~~~~~i~~~l~~~--~~~~t~i~vtH~~~~~~~-~d~i~~l~~ 593 (1077)
+.|||.+-||.+.+..--..+++. ..++|-.+|.|++-.... |||++|.+.
T Consensus 479 liDEpsAylDSeQRi~AskvikRfilhakktafvVEhdfImaTYladrvivf~G 532 (592)
T KOG0063|consen 479 LIDEPSAYLDSEQRIIASKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVFEG 532 (592)
T ss_pred EecCchhhcChHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHhhcceeEEEec
Confidence 999999999999887777777774 468899999999887765 999988764
No 452
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.51 E-value=5.5e-14 Score=146.94 Aligned_cols=138 Identities=17% Similarity=0.172 Sum_probs=97.0
Q ss_pred cccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeeCCCCCHHHHhhhee-EEccCCCcccccHH
Q 001438 397 VAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG-LVNQEPALFATTIR 475 (1077)
Q Consensus 397 ~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~-~v~Q~~~lf~~ti~ 475 (1077)
..+.+|+++++++|++++|.||||+||||+++.+.+.. +..++| +||-.. ..-++.
T Consensus 16 ~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~---------------------~la~~G~~vpa~~--~~l~~~ 72 (204)
T cd03282 16 NFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLA---------------------IMAQIGCFVPAEY--ATLPIF 72 (204)
T ss_pred cEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHH---------------------HHHHcCCCcchhh--cCccCh
Confidence 46889999999999999999999999999999998763 222333 222111 122566
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHH
Q 001438 476 ENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAES 555 (1077)
Q Consensus 476 ~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~p~illlDEpts~lD~~~ 555 (1077)
|||...... +..+.++..++|+|+||+ ..+-++..+|+++|||||++++|+..
T Consensus 73 d~I~~~~~~--------------------------~d~~~~~~S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~~~~ 125 (204)
T cd03282 73 NRLLSRLSN--------------------------DDSMERNLSTFASEMSET-AYILDYADGDSLVLIDELGRGTSSAD 125 (204)
T ss_pred hheeEecCC--------------------------ccccchhhhHHHHHHHHH-HHHHHhcCCCcEEEeccccCCCCHHH
Confidence 666432111 111233445799999976 45556788999999999999999976
Q ss_pred HHHH-HHHHHHHh-CCCeEEEEccCchhHhh
Q 001438 556 ENSV-QEALDRVM-VGRTTVVVAHRLSTIRN 584 (1077)
Q Consensus 556 ~~~i-~~~l~~~~-~~~t~i~vtH~~~~~~~ 584 (1077)
...+ .+.++.+. .+.++|++||+.+.++.
T Consensus 126 ~~~l~~~il~~l~~~~~~~i~~TH~~~l~~~ 156 (204)
T cd03282 126 GFAISLAILECLIKKESTVFFATHFRDIAAI 156 (204)
T ss_pred HHHHHHHHHHHHHhcCCEEEEECChHHHHHH
Confidence 5554 34444443 48999999999998765
No 453
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=99.50 E-value=5.3e-14 Score=148.90 Aligned_cols=153 Identities=19% Similarity=0.240 Sum_probs=100.5
Q ss_pred ccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCC-CccEEEECCeeCCCCCHHHHhhheeEEccCCCcccc-cHH
Q 001438 398 AIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEP-LSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFAT-TIR 475 (1077)
Q Consensus 398 ~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~-~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~-ti~ 475 (1077)
.+.+|++++.++ ++++|+|||||||||+++.+.+..-. ..|. .+. ..+.+++++.| +|.. ++.
T Consensus 19 ~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l~~~g~------~vp-----~~~~~i~~~~~---i~~~~~~~ 83 (216)
T cd03284 19 FVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALLAQIGS------FVP-----ASKAEIGVVDR---IFTRIGAS 83 (216)
T ss_pred eEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHHhccCC------eec-----cccceecceee---EeccCCch
Confidence 477899999887 99999999999999999999764321 1121 111 01234666654 3333 555
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHh--ccCCCEEEEeCc---CCC
Q 001438 476 ENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAI--VKNPSILLLDEA---TSA 550 (1077)
Q Consensus 476 ~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal--~~~p~illlDEp---ts~ 550 (1077)
||+..|.. .=...+..+++++ ..+|+++||||| |++
T Consensus 84 ~~ls~g~s---------------------------------------~f~~e~~~l~~~l~~~~~~~llllDEp~~gt~~ 124 (216)
T cd03284 84 DDLAGGRS---------------------------------------TFMVEMVETANILNNATERSLVLLDEIGRGTST 124 (216)
T ss_pred hhhccCcc---------------------------------------hHHHHHHHHHHHHHhCCCCeEEEEecCCCCCCh
Confidence 55554421 1111122334433 469999999999 999
Q ss_pred CCHHH-HHHHHHHHHHHhCCCeEEEEccCchhHhhcCEEEEEECCEEEEecChhHH
Q 001438 551 LDAES-ENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEEL 605 (1077)
Q Consensus 551 lD~~~-~~~i~~~l~~~~~~~t~i~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l 605 (1077)
+|... ...+.+.+.+. .+.|+|++||+.+....+|++..+++|++...++.+++
T Consensus 125 lD~~~~~~~il~~l~~~-~~~~vi~~TH~~~l~~l~~~~~~v~~~~~~~~~~~~~l 179 (216)
T cd03284 125 YDGLSIAWAIVEYLHEK-IGAKTLFATHYHELTELEGKLPRVKNFHVAVKEKGGGV 179 (216)
T ss_pred HHHHHHHHHHHHHHHhc-cCCcEEEEeCcHHHHHHhhcCCCeEEEEEEEEeeCCeE
Confidence 99865 23344444332 37899999999877777888878899998776655544
No 454
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=99.50 E-value=7e-12 Score=141.87 Aligned_cols=64 Identities=27% Similarity=0.562 Sum_probs=56.5
Q ss_pred cccccEEEeeeeeeCCCCCcccccccceeeeeCCCEEEEECCCCCCHHHHHHHHhhccCCCCCCC
Q 001438 1013 NVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKA 1077 (1077)
Q Consensus 1013 ~~~G~I~f~nVsf~Y~~~~~~~VLk~vsl~I~~GekVaIVGrTGsGKSTLi~lL~Rfyd~~~G~i 1077 (1077)
|.+-.|+|++|++.=|++ ...+.+|+||+|+.|+.+-|+||||||||||+..|-.+|+..+|++
T Consensus 429 ~~Dn~i~~e~v~l~tPt~-g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l 492 (659)
T KOG0060|consen 429 PADNAIEFEEVSLSTPTN-GDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKL 492 (659)
T ss_pred cccceEEeeeeeecCCCC-CceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeE
Confidence 344579999999999985 3345688999999999999999999999999999999999888875
No 455
>PRK00064 recF recombination protein F; Reviewed
Probab=99.46 E-value=1.2e-12 Score=149.75 Aligned_cols=76 Identities=25% Similarity=0.333 Sum_probs=66.0
Q ss_pred CCCChHHHHHHHHHHHhc---------cCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhh---cC
Q 001438 519 IQLSGGQKQRIAISRAIV---------KNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN---AD 586 (1077)
Q Consensus 519 ~~LSgGqkqri~lARal~---------~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~---~d 586 (1077)
..+|+||+|+++||+++. .+|+|+|||||+++||+...+.+.+.+.+. +..++++||+.+.+.. .+
T Consensus 272 ~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~--~~qv~it~~~~~~~~~~~~~~ 349 (361)
T PRK00064 272 DFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL--GAQVFITTTDLEDLADLLENA 349 (361)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc--CCEEEEEcCChhhhhhhhccC
Confidence 469999999999999885 799999999999999999999998888653 4588999998876543 46
Q ss_pred EEEEEECCEE
Q 001438 587 VIAVVQGRKI 596 (1077)
Q Consensus 587 ~i~~l~~G~i 596 (1077)
+++.+++|++
T Consensus 350 ~i~~v~~G~i 359 (361)
T PRK00064 350 KIFHVEQGKI 359 (361)
T ss_pred cEEEEeCCEE
Confidence 8999999997
No 456
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.45 E-value=2.5e-13 Score=179.76 Aligned_cols=119 Identities=24% Similarity=0.306 Sum_probs=103.0
Q ss_pred cccccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHH------HHHHHHHhccCCCEE
Q 001438 469 LFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQ------RIAISRAIVKNPSIL 542 (1077)
Q Consensus 469 lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkq------ri~lARal~~~p~il 542 (1077)
.|+||++|||.+ .++.+.+ ..+++.++..+++..+|.| +|.++.+| .||||||| |++||||++.+|++|
T Consensus 1153 ~~~~~~~~~i~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~lS~Gq~~~~~~~~rlala~~~~~~~~il 1227 (1311)
T TIGR00606 1153 TYRGQDIEYIEI-RSDADEN--VSASDKRRNYNYRVVMLKG-DTALDMRG-RCSAGQKVLASLIIRLALAETFCLNCGII 1227 (1311)
T ss_pred HcCccHHHHhhc-CCCCChH--HHHHHHcCchHHHhccCCC-CeecCCCC-CCchhhhhHhhHhHHHHHHHHHhcCCCEE
Confidence 489999999999 7766655 6788888999999999999 89998776 89999999 999999999999999
Q ss_pred EEeCcCCCCCHHHHHHHHHHHHHHh------CCCeEEEEccCchhHh------hcCEEEEEE
Q 001438 543 LLDEATSALDAESENSVQEALDRVM------VGRTTVVVAHRLSTIR------NADVIAVVQ 592 (1077)
Q Consensus 543 llDEpts~lD~~~~~~i~~~l~~~~------~~~t~i~vtH~~~~~~------~~d~i~~l~ 592 (1077)
+|||||++||+.+...+.+.|..+. .|.|+|+|||+++.+. .||+.+.+.
T Consensus 1228 ~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~~~~~~~~~~~~~~~~~~~ 1289 (1311)
T TIGR00606 1228 ALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDEDFVELLGRSEYVEKFYRLK 1289 (1311)
T ss_pred EeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHHHHHHHhhccccceeeeee
Confidence 9999999999999999988887652 3789999999999875 356666553
No 457
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.42 E-value=1.7e-13 Score=139.22 Aligned_cols=59 Identities=37% Similarity=0.665 Sum_probs=55.2
Q ss_pred cEEEeeeeeeCCCCCcccccccceeeeeCCCEEEEECCCCCCHHHHHHHHhhccCCCCCCC
Q 001438 1017 TIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKA 1077 (1077)
Q Consensus 1017 ~I~f~nVsf~Y~~~~~~~VLk~vsl~I~~GekVaIVGrTGsGKSTLi~lL~Rfyd~~~G~i 1077 (1077)
.|+++||+-+||++ +.+|+||||+|++||.|||+||||||||||+..|-|+.||++|+|
T Consensus 3 ~i~~~nl~k~yp~~--~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i 61 (258)
T COG3638 3 MIEVKNLSKTYPGG--HQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEI 61 (258)
T ss_pred eEEEeeeeeecCCC--ceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceE
Confidence 48999999999854 468999999999999999999999999999999999999999975
No 458
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=99.37 E-value=8.4e-13 Score=141.34 Aligned_cols=72 Identities=26% Similarity=0.424 Sum_probs=59.0
Q ss_pred CCChHHHHHHHHHHHh----ccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhhcCEEEEE
Q 001438 520 QLSGGQKQRIAISRAI----VKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVV 591 (1077)
Q Consensus 520 ~LSgGqkqri~lARal----~~~p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~~d~i~~l 591 (1077)
.||||||.+++||--+ +.++++++|||+.++||....+.+.+.|++..++.-+|++||+......||+.+.+
T Consensus 136 ~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~~~Q~ii~Th~~~~~~~a~~~~~v 211 (220)
T PF02463_consen 136 FLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSKQSQFIITTHNPEMFEDADKLIGV 211 (220)
T ss_dssp GS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTTTSEEEEE-S-HHHHTT-SEEEEE
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 8999999999998443 56789999999999999999999999999988788899999999999999988765
No 459
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.35 E-value=7.7e-13 Score=137.19 Aligned_cols=58 Identities=41% Similarity=0.686 Sum_probs=54.4
Q ss_pred cEEEeeeeeeCCCCCcccccccceeeeeCCCEEEEECCCCCCHHHHHHHHhhccCCCCCCC
Q 001438 1017 TIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKA 1077 (1077)
Q Consensus 1017 ~I~f~nVsf~Y~~~~~~~VLk~vsl~I~~GekVaIVGrTGsGKSTLi~lL~Rfyd~~~G~i 1077 (1077)
.+++++|+.+|++ ..||+|+||+|++||.|+||||||||||||++++.+|..|++|+|
T Consensus 3 ~l~i~~v~~~f~~---~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V 60 (248)
T COG1116 3 LLEIEGVSKSFGG---VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEV 60 (248)
T ss_pred eEEEEeeEEEeCc---eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE
Confidence 4889999999975 468999999999999999999999999999999999999999975
No 460
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.34 E-value=1.2e-12 Score=143.77 Aligned_cols=60 Identities=28% Similarity=0.617 Sum_probs=54.3
Q ss_pred ccEEEeeeeeeCCCCCcccccccceeeeeCCCEEEEECCCCCCHHHHHHHHhhccCCCCCCC
Q 001438 1016 GTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKA 1077 (1077)
Q Consensus 1016 G~I~f~nVsf~Y~~~~~~~VLk~vsl~I~~GekVaIVGrTGsGKSTLi~lL~Rfyd~~~G~i 1077 (1077)
|+|+|+||+++|++. ..++|+|+||+|++||++|||||||||||||+++|+|+++ .+|+|
T Consensus 1 g~i~~~nls~~~~~~-~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I 60 (275)
T cd03289 1 GQMTVKDLTAKYTEG-GNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDI 60 (275)
T ss_pred CeEEEEEEEEEeCCC-CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEE
Confidence 689999999999743 2358999999999999999999999999999999999998 67875
No 461
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=99.32 E-value=3e-11 Score=139.47 Aligned_cols=175 Identities=22% Similarity=0.327 Sum_probs=115.4
Q ss_pred cccccceeEEecCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCe---eCCC-----CCHHHHhhheeEEcc--C
Q 001438 397 VAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGN---NIKG-----LDLKWLRQQIGLVNQ--E 466 (1077)
Q Consensus 397 ~~~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~~~g~---~~~~-----~~~~~~r~~i~~v~Q--~ 466 (1077)
..+++++ |++.+|++++|+|+||+|||||+++|+|+++|+.|.|.+.|+ ++.+ ++...+++.+.++.+ +
T Consensus 146 ~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~~ 224 (438)
T PRK07721 146 VRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSADLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSDQ 224 (438)
T ss_pred hhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCCC
Confidence 4579999 999999999999999999999999999999999999999554 4442 344557788998864 3
Q ss_pred CCcccccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCCh-HHHHH-HHHHHHhccCCCEEEE
Q 001438 467 PALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSG-GQKQR-IAISRAIVKNPSILLL 544 (1077)
Q Consensus 467 ~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSg-Gqkqr-i~lARal~~~p~illl 544 (1077)
|.+.. ......++..+ +++.. .|.|-.+-- .+++- -|-|| |+++ ..+|+
T Consensus 225 ~~~~r---------------~~~~~~a~~iA---Eyfr~--~g~~Vll~~--Dsltr~A~A~rEisl~---~ge~P---- 275 (438)
T PRK07721 225 PALMR---------------IKGAYTATAIA---EYFRD--QGLNVMLMM--DSVTRVAMAQREIGLA---VGEPP---- 275 (438)
T ss_pred CHHHH---------------HHHHHHHHHHH---HHHHH--CCCcEEEEE--eChHHHHHHHHHHHHh---cCCCC----
Confidence 32110 11111122222 11211 122211100 01110 01111 1111 12222
Q ss_pred eCcCCCCCHHHHHHHHHHHHHHh---CCC-----eEEEEccCchhHhhcCEEEEEECCEEEEecChhH
Q 001438 545 DEATSALDAESENSVQEALDRVM---VGR-----TTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEE 604 (1077)
Q Consensus 545 DEpts~lD~~~~~~i~~~l~~~~---~~~-----t~i~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~ 604 (1077)
.|+|+|+.....+.+.+++.. +|. |+++.+|+++. ..||++.++.||+|+.+++..+
T Consensus 276 --~~~G~dp~~~~~l~~ller~~~~~~GsIT~~~TVlv~~hdm~e-~i~d~v~~i~dG~Ivls~~la~ 340 (438)
T PRK07721 276 --TTKGYTPSVFAILPKLLERTGTNASGSITAFYTVLVDGDDMNE-PIADTVRGILDGHFVLDRQLAN 340 (438)
T ss_pred --ccccCCHHHHHHHHHHHHHhcCCCCCCeeeEEEEEEECCCCCc-hhhhhEEEecCEEEEEeccHHH
Confidence 478999999999999888765 465 99999999995 6799999999999999887654
No 462
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.30 E-value=2.4e-12 Score=145.04 Aligned_cols=65 Identities=32% Similarity=0.537 Sum_probs=57.6
Q ss_pred ccccccEEEeeeeeeCCCCCcccccccceeeeeCCCEEEEECCCCCCHHHHHHHHhhccC-----CCCCCC
Q 001438 1012 TNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYD-----PTAGKA 1077 (1077)
Q Consensus 1012 ~~~~G~I~f~nVsf~Y~~~~~~~VLk~vsl~I~~GekVaIVGrTGsGKSTLi~lL~Rfyd-----~~~G~i 1077 (1077)
|+..|.|+|+||+++|++. ..++|+|+||+|++||++|||||||||||||+++|+|+++ |.+|+|
T Consensus 75 ~~~~~~i~~~nls~~y~~~-~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I 144 (329)
T PRK14257 75 FNHANVFEIRNFNFWYMNR-TKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEI 144 (329)
T ss_pred CCcCceEEEEeeEEEecCC-CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEE
Confidence 5677899999999999743 2458999999999999999999999999999999999997 457864
No 463
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.29 E-value=2.5e-11 Score=128.29 Aligned_cols=134 Identities=15% Similarity=0.210 Sum_probs=89.9
Q ss_pred cccceeEEecCCcEEEEEcCCCCcHHHHHHHHhc--ccCCCccEEEECCeeCCCCCHHHHhhheeEEccCCCccc--ccH
Q 001438 399 IFDKFCLDIPAGKIVALVGGSGSGKSTVISLIER--FYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFA--TTI 474 (1077)
Q Consensus 399 ~l~~isl~i~~g~~~~ivG~~GsGKSTl~~~l~g--~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~--~ti 474 (1077)
+-+|++++=..+.+++|+||||+|||||++.+.. .+ +..|...... ..+++|..|...-++ .++
T Consensus 18 vpnd~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~l-a~~G~~v~a~-----------~~~~~~~d~i~~~l~~~~si 85 (213)
T cd03281 18 VPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFL-AHIGSFVPAD-----------SATIGLVDKIFTRMSSRESV 85 (213)
T ss_pred EcceEEecCCCceEEEEECCCCCChHHHHHHHHHHHHH-HhCCCeeEcC-----------CcEEeeeeeeeeeeCCccCh
Confidence 4455555322237999999999999999999983 33 5566654432 124777777543221 122
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHH
Q 001438 475 RENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAE 554 (1077)
Q Consensus 475 ~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~p~illlDEpts~lD~~ 554 (1077)
.+++ -|. .-+-||+++|++++.+|+++|||||++++|+.
T Consensus 86 ~~~~--------------------------------S~f---------~~el~~l~~~l~~~~~~slvllDE~~~gtd~~ 124 (213)
T cd03281 86 SSGQ--------------------------------SAF---------MIDLYQVSKALRLATRRSLVLIDEFGKGTDTE 124 (213)
T ss_pred hhcc--------------------------------chH---------HHHHHHHHHHHHhCCCCcEEEeccccCCCCHH
Confidence 2211 000 23458999999999999999999999999997
Q ss_pred HH-HHHHHHHHHHhC----CCeEEEEccCchhHhhc
Q 001438 555 SE-NSVQEALDRVMV----GRTTVVVAHRLSTIRNA 585 (1077)
Q Consensus 555 ~~-~~i~~~l~~~~~----~~t~i~vtH~~~~~~~~ 585 (1077)
.. ......++.+.+ +.++|++||+.+.++..
T Consensus 125 ~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~ 160 (213)
T cd03281 125 DGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNRS 160 (213)
T ss_pred HHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhh
Confidence 54 444556666532 24899999999987654
No 464
>PHA02562 46 endonuclease subunit; Provisional
Probab=99.29 E-value=4.1e-12 Score=155.84 Aligned_cols=91 Identities=26% Similarity=0.421 Sum_probs=81.5
Q ss_pred cCccchhhhhcCCC------CCCChHHHHHHHHHHHhc----------cCCCEEEEeCcC-CCCCHHHHHHHHHHHHHHh
Q 001438 505 NLPERFETQVGERG------IQLSGGQKQRIAISRAIV----------KNPSILLLDEAT-SALDAESENSVQEALDRVM 567 (1077)
Q Consensus 505 ~l~~g~~t~~~~~g------~~LSgGqkqri~lARal~----------~~p~illlDEpt-s~lD~~~~~~i~~~l~~~~ 567 (1077)
.+|+++++.+++.| .+||||||||++||||++ .+|+++|||||| ++||+.+...+.+.|.++
T Consensus 447 ~~~~~~~~~~~~~g~~~~~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~- 525 (562)
T PHA02562 447 TLDEEFNETIKSRGREDFSYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSL- 525 (562)
T ss_pred EechhhhhHHhcCCCCccChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhC-
Confidence 46888888888877 689999999999999987 599999999998 789999999999999988
Q ss_pred CCCeEEEEccCchhHhhcCEEEEEEC-CEE
Q 001438 568 VGRTTVVVAHRLSTIRNADVIAVVQG-RKI 596 (1077)
Q Consensus 568 ~~~t~i~vtH~~~~~~~~d~i~~l~~-G~i 596 (1077)
++.|+|+|||+.+....||++++|++ |+.
T Consensus 526 ~~~~iiiish~~~~~~~~d~~~~l~~~~~~ 555 (562)
T PHA02562 526 KDTNVFVISHKDHDPQKFDRHLKMEKVGRF 555 (562)
T ss_pred CCCeEEEEECchhchhhhhcEEEEEEECCe
Confidence 78999999999888888999999986 543
No 465
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.27 E-value=4.7e-12 Score=130.06 Aligned_cols=61 Identities=26% Similarity=0.526 Sum_probs=54.9
Q ss_pred cEEEeeeeeeCCCCCc-ccccccceeeeeCCCEEEEECCCCCCHHHHHHHHhhccCCCCCCC
Q 001438 1017 TIELRGVHFSYPSRPE-VVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKA 1077 (1077)
Q Consensus 1017 ~I~f~nVsf~Y~~~~~-~~VLk~vsl~I~~GekVaIVGrTGsGKSTLi~lL~Rfyd~~~G~i 1077 (1077)
.++.+|+++.|+.+.. -++||||||+|.+||++||||+||||||||.++|.++-.|+.|+|
T Consensus 3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I 64 (252)
T COG1124 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSI 64 (252)
T ss_pred eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceE
Confidence 4789999999975431 148999999999999999999999999999999999999999986
No 466
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=99.27 E-value=4.9e-12 Score=131.09 Aligned_cols=80 Identities=18% Similarity=0.197 Sum_probs=56.0
Q ss_pred CCCCCCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHH-HHHHHHh--CCCeEEEEccCchhHhhcCEEEEEE
Q 001438 516 ERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQ-EALDRVM--VGRTTVVVAHRLSTIRNADVIAVVQ 592 (1077)
Q Consensus 516 ~~g~~LSgGqkqri~lARal~~~p~illlDEpts~lD~~~~~~i~-~~l~~~~--~~~t~i~vtH~~~~~~~~d~i~~l~ 592 (1077)
++..++|+|++|...+.+. +.+|+++|+|||++++|+.....+. ..++.+. .+.++|++||+.+..+.+|+---++
T Consensus 57 ~~~s~fs~~~~~l~~~l~~-~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~l~~~~~~~~~v~ 135 (185)
T smart00534 57 QGLSTFMVEMKETANILKN-ATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHELTKLADEHPGVR 135 (185)
T ss_pred ccccHHHHHHHHHHHHHHh-CCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHHHhhcCccce
Confidence 3445788888874443332 3499999999999999999776664 4455543 3789999999998666677533344
Q ss_pred CCEE
Q 001438 593 GRKI 596 (1077)
Q Consensus 593 ~G~i 596 (1077)
+++.
T Consensus 136 ~~~~ 139 (185)
T smart00534 136 NLHM 139 (185)
T ss_pred EEEE
Confidence 4443
No 467
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.26 E-value=4.2e-12 Score=128.78 Aligned_cols=57 Identities=33% Similarity=0.666 Sum_probs=53.1
Q ss_pred EEEeeeeeeCCCCCcccccccceeeeeCCCEEEEECCCCCCHHHHHHHHhhccCCCCCCC
Q 001438 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKA 1077 (1077)
Q Consensus 1018 I~f~nVsf~Y~~~~~~~VLk~vsl~I~~GekVaIVGrTGsGKSTLi~lL~Rfyd~~~G~i 1077 (1077)
|+++||+++|+++ ++|+|+||+|+|||.+||+|++|||||||+++|.++++|++|+|
T Consensus 1 l~~~~l~~~~~~~---~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v 57 (163)
T cd03216 1 LELRGITKRFGGV---KALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEI 57 (163)
T ss_pred CEEEEEEEEECCe---EEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEE
Confidence 5799999999753 48999999999999999999999999999999999999999975
No 468
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.26 E-value=6.9e-12 Score=132.84 Aligned_cols=65 Identities=31% Similarity=0.605 Sum_probs=58.2
Q ss_pred ccccccEEEeeeeeeCCCCCcccccccceeeeeCCCEEEEECCCCCCHHHHHHHHhhccCCCCCCC
Q 001438 1012 TNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKA 1077 (1077)
Q Consensus 1012 ~~~~G~I~f~nVsf~Y~~~~~~~VLk~vsl~I~~GekVaIVGrTGsGKSTLi~lL~Rfyd~~~G~i 1077 (1077)
||..|.|+++|++++|+.. ..++|+|+||+|++||.+||+|++|||||||+++|.++++|++|+|
T Consensus 1 ~~~~~~l~~~~l~~~~~~~-~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i 65 (207)
T cd03369 1 WPEHGEIEVENLSVRYAPD-LPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKI 65 (207)
T ss_pred CCCCCeEEEEEEEEEeCCC-CcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeE
Confidence 4556889999999999743 2358999999999999999999999999999999999999999975
No 469
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.26 E-value=7.2e-12 Score=136.23 Aligned_cols=172 Identities=25% Similarity=0.365 Sum_probs=117.6
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHhcccCCCccEEE-----------ECCeeCCCC----CHHHHhh--heeEEccCCCcc
Q 001438 408 PAGKIVALVGGSGSGKSTVISLIERFYEPLSGEIL-----------LDGNNIKGL----DLKWLRQ--QIGLVNQEPALF 470 (1077)
Q Consensus 408 ~~g~~~~ivG~~GsGKSTl~~~l~g~~~~~~G~i~-----------~~g~~~~~~----~~~~~r~--~i~~v~Q~~~lf 470 (1077)
+||+..++||.||-||||-++.++|-.+|.-|.-. +.|..+.++ ..+.++. +.-||.|-|-.-
T Consensus 98 rpg~vlglvgtngigkstAlkilagk~kpnlg~~~~pp~w~~il~~frgselq~yftk~le~~lk~~~kpQyvd~ipr~~ 177 (592)
T KOG0063|consen 98 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRYDNPPDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQYVDQIPRAV 177 (592)
T ss_pred CcchhccccccCcccHHHHHHHHhCCCCCCCCCCCCCcchHHHhhhhhhHHHhhhhhhhccccccCcCChHHHHHHHHHH
Confidence 58999999999999999999999999999877531 112222111 1111111 123444444444
Q ss_pred cccHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCcCCC
Q 001438 471 ATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSA 550 (1077)
Q Consensus 471 ~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~p~illlDEpts~ 550 (1077)
.+++.+++.--.+..+.++ +|...++ +........+||||+-||.+||.+.++++|++++|||.|-
T Consensus 178 k~~v~~~l~~~~~r~~~~~---~~~~~~L-----------~~~~~re~~~lsggelqrfaia~~~vq~advyMFDEpSsY 243 (592)
T KOG0063|consen 178 KGTVGSLLDRKDERDNKEE---VCDQLDL-----------NNLLDREVEQLSGGELQRFAIAMVCVQKADVYMFDEPSSY 243 (592)
T ss_pred HHHHHHHHHHHhhcccHHH---HHHHHHH-----------hhHHHhhhhhcccchhhhhhhhhhhhhhcceeEecCCccc
Confidence 5566666532211112222 2222221 1112223457999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHh-CCCeEEEEccCchhHhh-cCEEEEEEC
Q 001438 551 LDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQG 593 (1077)
Q Consensus 551 lD~~~~~~i~~~l~~~~-~~~t~i~vtH~~~~~~~-~d~i~~l~~ 593 (1077)
||.+.+-.--..|+.+. .++=+|+|.|+++.+.. .|-|.++-.
T Consensus 244 LDVKQRLkaA~~IRsl~~p~~YiIVVEHDLsVLDylSDFiCcLYG 288 (592)
T KOG0063|consen 244 LDVKQRLKAAITIRSLINPDRYIIVVEHDLSVLDYLSDFICCLYG 288 (592)
T ss_pred chHHHhhhHHHHHHHhhCCCCeEEEEEeechHHHhhhcceeEEec
Confidence 99998888877887764 58899999999999986 888888754
No 470
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.26 E-value=5.6e-12 Score=133.29 Aligned_cols=60 Identities=35% Similarity=0.568 Sum_probs=55.2
Q ss_pred EEEeeeeeeCCCC--CcccccccceeeeeCCCEEEEECCCCCCHHHHHHHHhhccCCCCCCC
Q 001438 1018 IELRGVHFSYPSR--PEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKA 1077 (1077)
Q Consensus 1018 I~f~nVsf~Y~~~--~~~~VLk~vsl~I~~GekVaIVGrTGsGKSTLi~lL~Rfyd~~~G~i 1077 (1077)
|+|+||+..|+.. +..++|+||||+|++||..||+|+||||||||+.++-|+-.|++|+|
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v 63 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSV 63 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceE
Confidence 8999999999862 23468999999999999999999999999999999999999999986
No 471
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.26 E-value=5.1e-12 Score=133.10 Aligned_cols=58 Identities=38% Similarity=0.688 Sum_probs=54.5
Q ss_pred cEEEeeeeeeCCCCCcccccccceeeeeCCCEEEEECCCCCCHHHHHHHHhhccCCCCCCC
Q 001438 1017 TIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKA 1077 (1077)
Q Consensus 1017 ~I~f~nVsf~Y~~~~~~~VLk~vsl~I~~GekVaIVGrTGsGKSTLi~lL~Rfyd~~~G~i 1077 (1077)
.|+++|++|+|..+ +||+||||+|++||.+|||||.|||||||+.+++++..|.+|+|
T Consensus 4 ~i~v~nl~v~y~~~---~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i 61 (254)
T COG1121 4 MIEVENLTVSYGNR---PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEI 61 (254)
T ss_pred EEEEeeeEEEECCE---eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceE
Confidence 59999999999754 38999999999999999999999999999999999999999986
No 472
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.25 E-value=6.6e-12 Score=127.72 Aligned_cols=58 Identities=26% Similarity=0.587 Sum_probs=53.3
Q ss_pred EEEeeeeeeCCCCCcccccccceeeeeCCCEEEEECCCCCCHHHHHHHHhhccCCCCCCC
Q 001438 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKA 1077 (1077)
Q Consensus 1018 I~f~nVsf~Y~~~~~~~VLk~vsl~I~~GekVaIVGrTGsGKSTLi~lL~Rfyd~~~G~i 1077 (1077)
|+++||+++|+++ .++|+|+||+|++||++||+|++|||||||+++|.++++|++|+|
T Consensus 1 i~~~~~~~~~~~~--~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i 58 (166)
T cd03223 1 IELENLSLATPDG--RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRI 58 (166)
T ss_pred CEEEEEEEEcCCC--CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceE
Confidence 5799999999743 347999999999999999999999999999999999999999975
No 473
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.25 E-value=6.8e-12 Score=139.49 Aligned_cols=61 Identities=38% Similarity=0.590 Sum_probs=55.0
Q ss_pred cEEEeeeeeeCCCCC--cccccccceeeeeCCCEEEEECCCCCCHHHHHHHHhhccCCCCCCC
Q 001438 1017 TIELRGVHFSYPSRP--EVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKA 1077 (1077)
Q Consensus 1017 ~I~f~nVsf~Y~~~~--~~~VLk~vsl~I~~GekVaIVGrTGsGKSTLi~lL~Rfyd~~~G~i 1077 (1077)
.|+++||+++|++++ ..++|+||||+|++||++||+|++|||||||+++|.++++|++|+|
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i 64 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTV 64 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEE
Confidence 389999999997432 2358999999999999999999999999999999999999999975
No 474
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.24 E-value=4.9e-12 Score=121.53 Aligned_cols=61 Identities=36% Similarity=0.596 Sum_probs=54.1
Q ss_pred cEEEeeeeeeCCCCC-cccccccceeeeeCCCEEEEECCCCCCHHHHHHHHhhccCCCCCCC
Q 001438 1017 TIELRGVHFSYPSRP-EVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKA 1077 (1077)
Q Consensus 1017 ~I~f~nVsf~Y~~~~-~~~VLk~vsl~I~~GekVaIVGrTGsGKSTLi~lL~Rfyd~~~G~i 1077 (1077)
-|+.++++..-++.. +..|||||+|.|++||+||||||||||||||+.+|.++-+|++|+|
T Consensus 6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV 67 (228)
T COG4181 6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEV 67 (228)
T ss_pred eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceE
Confidence 478888888776432 3469999999999999999999999999999999999999999986
No 475
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.24 E-value=8.3e-12 Score=129.65 Aligned_cols=60 Identities=45% Similarity=0.640 Sum_probs=53.9
Q ss_pred EEEeeeeeeCCCCC-cccccccceeeeeCCCEEEEECCCCCCHHHHHHHHhhccCCCCCCC
Q 001438 1018 IELRGVHFSYPSRP-EVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKA 1077 (1077)
Q Consensus 1018 I~f~nVsf~Y~~~~-~~~VLk~vsl~I~~GekVaIVGrTGsGKSTLi~lL~Rfyd~~~G~i 1077 (1077)
|+++||+-.|.... ..+||+|+||+|++||.|||+||||||||||+++|-.+-.|++|+|
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v 62 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEV 62 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceE
Confidence 67899999996432 2468999999999999999999999999999999999999999974
No 476
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.24 E-value=1e-11 Score=133.48 Aligned_cols=65 Identities=40% Similarity=0.876 Sum_probs=58.4
Q ss_pred cccccEEEeeeeeeCCCCCcccccccceeeeeCCCEEEEECCCCCCHHHHHHHHhhccCCCCCCC
Q 001438 1013 NVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKA 1077 (1077)
Q Consensus 1013 ~~~G~I~f~nVsf~Y~~~~~~~VLk~vsl~I~~GekVaIVGrTGsGKSTLi~lL~Rfyd~~~G~i 1077 (1077)
...|.|+++|++++|+.+...++|+|+||+|++||.+||+||+|||||||+++|.++++|++|+|
T Consensus 7 ~~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i 71 (226)
T cd03248 7 HLKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQV 71 (226)
T ss_pred CcCceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEE
Confidence 45688999999999975433358999999999999999999999999999999999999999975
No 477
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.24 E-value=6.8e-12 Score=132.07 Aligned_cols=61 Identities=28% Similarity=0.487 Sum_probs=55.1
Q ss_pred cEEEeeeeeeCCCC-CcccccccceeeeeCCCEEEEECCCCCCHHHHHHHHhhccC---CCCCCC
Q 001438 1017 TIELRGVHFSYPSR-PEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYD---PTAGKA 1077 (1077)
Q Consensus 1017 ~I~f~nVsf~Y~~~-~~~~VLk~vsl~I~~GekVaIVGrTGsGKSTLi~lL~Rfyd---~~~G~i 1077 (1077)
.+.++||+|.||.+ ...++|+|+||+|++||.+||+|++|||||||+++|.++++ |++|+|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i 67 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDI 67 (202)
T ss_pred eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEE
Confidence 36799999999853 34578999999999999999999999999999999999999 889975
No 478
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.23 E-value=8.7e-12 Score=140.17 Aligned_cols=61 Identities=20% Similarity=0.393 Sum_probs=55.3
Q ss_pred cEEEeeeeeeCCCCC--cccccccceeeeeCCCEEEEECCCCCCHHHHHHHHhhccCCCCCCC
Q 001438 1017 TIELRGVHFSYPSRP--EVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKA 1077 (1077)
Q Consensus 1017 ~I~f~nVsf~Y~~~~--~~~VLk~vsl~I~~GekVaIVGrTGsGKSTLi~lL~Rfyd~~~G~i 1077 (1077)
-|+++||+|+|++.. ..++|+|+||+|++||.+||+|++|||||||+++|.++++|++|+|
T Consensus 21 ~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I 83 (320)
T PRK13631 21 ILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTI 83 (320)
T ss_pred eEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeE
Confidence 589999999997431 2358999999999999999999999999999999999999999975
No 479
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.23 E-value=1e-11 Score=137.63 Aligned_cols=61 Identities=30% Similarity=0.595 Sum_probs=54.9
Q ss_pred cEEEeeeeeeCCCCCcccccccceeeeeCCCEEEEECCCCCCHHHHHHHHhhccCCCCCCC
Q 001438 1017 TIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKA 1077 (1077)
Q Consensus 1017 ~I~f~nVsf~Y~~~~~~~VLk~vsl~I~~GekVaIVGrTGsGKSTLi~lL~Rfyd~~~G~i 1077 (1077)
-|+++||+++|+.....++|+|+||+|++||.+||+|++|||||||+++|.++++|++|+|
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i 64 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQI 64 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEE
Confidence 4899999999974322358999999999999999999999999999999999999999975
No 480
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.23 E-value=8.8e-12 Score=133.00 Aligned_cols=59 Identities=39% Similarity=0.629 Sum_probs=53.8
Q ss_pred EEEeeeeeeCCCCCcccccccceeeeeCCCEEEEECCCCCCHHHHHHHHhhccCCCCCCC
Q 001438 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKA 1077 (1077)
Q Consensus 1018 I~f~nVsf~Y~~~~~~~VLk~vsl~I~~GekVaIVGrTGsGKSTLi~lL~Rfyd~~~G~i 1077 (1077)
|+++||+++|++. ..++|+|+||+|++||.+||+||+|||||||+++|.++++|++|+|
T Consensus 2 l~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i 60 (216)
T TIGR00960 2 IRFEQVSKAYPGG-HQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKI 60 (216)
T ss_pred eEEEEEEEEecCC-CeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE
Confidence 7899999999643 2358999999999999999999999999999999999999999975
No 481
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.23 E-value=1.1e-11 Score=132.51 Aligned_cols=60 Identities=25% Similarity=0.470 Sum_probs=54.2
Q ss_pred EEEeeeeeeCCCCCc-ccccccceeeeeCCCEEEEECCCCCCHHHHHHHHhhccCCCCCCC
Q 001438 1018 IELRGVHFSYPSRPE-VVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKA 1077 (1077)
Q Consensus 1018 I~f~nVsf~Y~~~~~-~~VLk~vsl~I~~GekVaIVGrTGsGKSTLi~lL~Rfyd~~~G~i 1077 (1077)
|+++||+++|+.+.. .++|+|+||+|++||.+||+|++|||||||+++|.++++|++|+|
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i 62 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFA 62 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceE
Confidence 789999999975321 258999999999999999999999999999999999999999975
No 482
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.22 E-value=1.2e-11 Score=132.49 Aligned_cols=61 Identities=28% Similarity=0.634 Sum_probs=55.8
Q ss_pred ccEEEeeeeeeCCCCCcccccccceeeeeCCCEEEEECCCCCCHHHHHHHHhhccCCCCCCC
Q 001438 1016 GTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKA 1077 (1077)
Q Consensus 1016 G~I~f~nVsf~Y~~~~~~~VLk~vsl~I~~GekVaIVGrTGsGKSTLi~lL~Rfyd~~~G~i 1077 (1077)
|+|+++|++++|+.. ..++|+|+||+|++||.+||+||+|||||||+++|.+++.|++|+|
T Consensus 1 ~~l~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i 61 (221)
T cd03244 1 GDIEFKNVSLRYRPN-LPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSI 61 (221)
T ss_pred CcEEEEEEEEecCCC-CcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEE
Confidence 679999999999743 2358999999999999999999999999999999999999999975
No 483
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.22 E-value=1.2e-11 Score=137.40 Aligned_cols=60 Identities=28% Similarity=0.553 Sum_probs=54.5
Q ss_pred EEEeeeeeeCCCCC--cccccccceeeeeCCCEEEEECCCCCCHHHHHHHHhhccCCCCCCC
Q 001438 1018 IELRGVHFSYPSRP--EVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKA 1077 (1077)
Q Consensus 1018 I~f~nVsf~Y~~~~--~~~VLk~vsl~I~~GekVaIVGrTGsGKSTLi~lL~Rfyd~~~G~i 1077 (1077)
|+++||+++|++.. ..++|+||||+|++||.+|||||+|||||||+.+|.++++|++|+|
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i 64 (287)
T PRK13637 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKI 64 (287)
T ss_pred EEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEE
Confidence 78999999997432 1358999999999999999999999999999999999999999975
No 484
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.22 E-value=1e-11 Score=123.04 Aligned_cols=57 Identities=37% Similarity=0.684 Sum_probs=52.8
Q ss_pred EEEeeeeeeCCCCCcccccccceeeeeCCCEEEEECCCCCCHHHHHHHHhhccCCCCCCC
Q 001438 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKA 1077 (1077)
Q Consensus 1018 I~f~nVsf~Y~~~~~~~VLk~vsl~I~~GekVaIVGrTGsGKSTLi~lL~Rfyd~~~G~i 1077 (1077)
++++|++++|++. ++|+|+||++++||.++|+||+|||||||+++|.++++|++|+|
T Consensus 1 l~~~~l~~~~~~~---~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i 57 (144)
T cd03221 1 IELENLSKTYGGK---LLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIV 57 (144)
T ss_pred CEEEEEEEEECCc---eEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEE
Confidence 5789999999643 47999999999999999999999999999999999999999975
No 485
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.22 E-value=1.3e-11 Score=133.02 Aligned_cols=60 Identities=35% Similarity=0.685 Sum_probs=54.0
Q ss_pred EEEeeeeeeCCCCC-cccccccceeeeeCCCEEEEECCCCCCHHHHHHHHhhccCCCCCCC
Q 001438 1018 IELRGVHFSYPSRP-EVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKA 1077 (1077)
Q Consensus 1018 I~f~nVsf~Y~~~~-~~~VLk~vsl~I~~GekVaIVGrTGsGKSTLi~lL~Rfyd~~~G~i 1077 (1077)
|+++||+++|+.+. ..++|+|+||+|++||.+||+||+|||||||+++|.++++|++|+|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i 62 (228)
T cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSI 62 (228)
T ss_pred eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE
Confidence 78999999996431 1258999999999999999999999999999999999999999975
No 486
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.21 E-value=1.2e-11 Score=133.47 Aligned_cols=61 Identities=30% Similarity=0.515 Sum_probs=54.9
Q ss_pred cEEEeeeeeeCCCCC-cccccccceeeeeCCCEEEEECCCCCCHHHHHHHHhhccCCCCCCC
Q 001438 1017 TIELRGVHFSYPSRP-EVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKA 1077 (1077)
Q Consensus 1017 ~I~f~nVsf~Y~~~~-~~~VLk~vsl~I~~GekVaIVGrTGsGKSTLi~lL~Rfyd~~~G~i 1077 (1077)
-|+++||+++|+.+. ..++|+|+||+|++||.+||+||+|||||||+++|.++++|++|+|
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i 66 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDV 66 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEE
Confidence 489999999997432 1458999999999999999999999999999999999999999975
No 487
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.21 E-value=1.3e-11 Score=137.17 Aligned_cols=60 Identities=35% Similarity=0.621 Sum_probs=54.3
Q ss_pred EEEeeeeeeCCCCCc--ccccccceeeeeCCCEEEEECCCCCCHHHHHHHHhhccCCCCCCC
Q 001438 1018 IELRGVHFSYPSRPE--VVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKA 1077 (1077)
Q Consensus 1018 I~f~nVsf~Y~~~~~--~~VLk~vsl~I~~GekVaIVGrTGsGKSTLi~lL~Rfyd~~~G~i 1077 (1077)
|+|+||+|+|++..+ .++|+|+||+|++||.+||+|++|||||||+++|.++++|++|+|
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i 63 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKV 63 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEE
Confidence 789999999974321 258999999999999999999999999999999999999999975
No 488
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=99.21 E-value=1.3e-10 Score=144.00 Aligned_cols=131 Identities=18% Similarity=0.241 Sum_probs=91.7
Q ss_pred eeEEecCC-cEEEEEcCCCCcHHHHHHHHhcc-cCCCccEEEECCeeCCCCCHHHHhhheeEEccCCCcccccHHHHHhc
Q 001438 403 FCLDIPAG-KIVALVGGSGSGKSTVISLIERF-YEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILY 480 (1077)
Q Consensus 403 isl~i~~g-~~~~ivG~~GsGKSTl~~~l~g~-~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~ 480 (1077)
+|+++.++ +.++|+||||+||||+++.+.+. +.+..|. +||..+.. .-.+.+++..
T Consensus 314 ~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G~---------------------~Vpa~~~~-~~~~~d~i~~ 371 (771)
T TIGR01069 314 FTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQSGI---------------------PIPANEHS-EIPYFEEIFA 371 (771)
T ss_pred ceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHHhCC---------------------CccCCccc-cccchhheee
Confidence 78888877 89999999999999999999987 3443331 44443310 0011222211
Q ss_pred CCCCCCHHHHHHHHHHHhHHHHHhcCccchhhhhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHH
Q 001438 481 GKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQ 560 (1077)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~lARal~~~p~illlDEpts~lD~~~~~~i~ 560 (1077)
. ..+ +-.+.++..++|+|++|+..+++++ .+|+++|||||++++|+.....+.
T Consensus 372 ~---i~~-----------------------~~si~~~LStfS~~m~~~~~il~~~-~~~sLvLlDE~g~GtD~~eg~ala 424 (771)
T TIGR01069 372 D---IGD-----------------------EQSIEQNLSTFSGHMKNISAILSKT-TENSLVLFDELGAGTDPDEGSALA 424 (771)
T ss_pred e---cCh-----------------------HhHHhhhhhHHHHHHHHHHHHHHhc-CCCcEEEecCCCCCCCHHHHHHHH
Confidence 0 000 0112233457999999999999987 789999999999999999888774
Q ss_pred -HHHHHHh-CCCeEEEEccCchhH
Q 001438 561 -EALDRVM-VGRTTVVVAHRLSTI 582 (1077)
Q Consensus 561 -~~l~~~~-~~~t~i~vtH~~~~~ 582 (1077)
..+..+. ++.++|++||..+..
T Consensus 425 ~aiLe~l~~~g~~viitTH~~eL~ 448 (771)
T TIGR01069 425 ISILEYLLKQNAQVLITTHYKELK 448 (771)
T ss_pred HHHHHHHHhcCCEEEEECChHHHH
Confidence 4555543 588999999998754
No 489
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.21 E-value=1.6e-11 Score=136.91 Aligned_cols=63 Identities=25% Similarity=0.459 Sum_probs=56.8
Q ss_pred cccEEEeeeeeeCCCCC--cccccccceeeeeCCCEEEEECCCCCCHHHHHHHHhhccCCCCCCC
Q 001438 1015 EGTIELRGVHFSYPSRP--EVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKA 1077 (1077)
Q Consensus 1015 ~G~I~f~nVsf~Y~~~~--~~~VLk~vsl~I~~GekVaIVGrTGsGKSTLi~lL~Rfyd~~~G~i 1077 (1077)
.|.|+++|++++|+.++ ..++|+|+||+|++||.+||+||+|||||||+++|.+++.|++|+|
T Consensus 4 ~~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i 68 (289)
T PRK13645 4 SKDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQT 68 (289)
T ss_pred cceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceE
Confidence 47899999999997542 1358999999999999999999999999999999999999999975
No 490
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.20 E-value=1.5e-11 Score=129.90 Aligned_cols=60 Identities=35% Similarity=0.568 Sum_probs=54.1
Q ss_pred EEEeeeeeeCCCCCc--ccccccceeeeeCCCEEEEECCCCCCHHHHHHHHhhccCCCCCCC
Q 001438 1018 IELRGVHFSYPSRPE--VVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKA 1077 (1077)
Q Consensus 1018 I~f~nVsf~Y~~~~~--~~VLk~vsl~I~~GekVaIVGrTGsGKSTLi~lL~Rfyd~~~G~i 1077 (1077)
|+++||+++|+++.. .++|+|+||+|++||.++|+||+|||||||+++|.|+++|++|+|
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i 62 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSV 62 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeE
Confidence 579999999975421 358999999999999999999999999999999999999999976
No 491
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.20 E-value=1.4e-11 Score=139.08 Aligned_cols=60 Identities=27% Similarity=0.487 Sum_probs=54.5
Q ss_pred EEEeeeeeeCCCCC-cccccccceeeeeCCCEEEEECCCCCCHHHHHHHHhhccCCCCCCC
Q 001438 1018 IELRGVHFSYPSRP-EVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKA 1077 (1077)
Q Consensus 1018 I~f~nVsf~Y~~~~-~~~VLk~vsl~I~~GekVaIVGrTGsGKSTLi~lL~Rfyd~~~G~i 1077 (1077)
|+|+||+++|+... ..++|+|+||+|++||.+||+||||||||||+.+|.++++|++|+|
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I 62 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSV 62 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEE
Confidence 78999999996422 2468999999999999999999999999999999999999999975
No 492
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.20 E-value=1.7e-11 Score=135.75 Aligned_cols=61 Identities=28% Similarity=0.543 Sum_probs=55.5
Q ss_pred cEEEeeeeeeCCCCCcccccccceeeeeCCCEEEEECCCCCCHHHHHHHHhhccCCCCCCC
Q 001438 1017 TIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKA 1077 (1077)
Q Consensus 1017 ~I~f~nVsf~Y~~~~~~~VLk~vsl~I~~GekVaIVGrTGsGKSTLi~lL~Rfyd~~~G~i 1077 (1077)
-|+++||+++|+.....++|+|+||+|++||.+||+|++|||||||+++|.++++|++|+|
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i 64 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKV 64 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEE
Confidence 4899999999975333458999999999999999999999999999999999999999975
No 493
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.20 E-value=1.8e-11 Score=129.80 Aligned_cols=59 Identities=39% Similarity=0.725 Sum_probs=55.5
Q ss_pred cEEEeeeeeeCCCCCcccccccceeeeeCCCEEEEECCCCCCHHHHHHHHhhccCCCCCCC
Q 001438 1017 TIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKA 1077 (1077)
Q Consensus 1017 ~I~f~nVsf~Y~~~~~~~VLk~vsl~I~~GekVaIVGrTGsGKSTLi~lL~Rfyd~~~G~i 1077 (1077)
.|+++|++|+|+++ .++|+|+||+|++||.++|+|+||||||||+.+|.+++.|++|.|
T Consensus 3 ~i~~~~l~~~y~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v 61 (235)
T COG1122 3 MIEAENLSFRYPGR--KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEV 61 (235)
T ss_pred eEEEEEEEEEcCCC--ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEE
Confidence 58999999999876 468999999999999999999999999999999999999999975
No 494
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.20 E-value=1.6e-11 Score=125.46 Aligned_cols=59 Identities=44% Similarity=0.678 Sum_probs=55.1
Q ss_pred ccEEEeeeeeeCCCCCcccccccceeeeeCCCEEEEECCCCCCHHHHHHHHhhccCCCCCCC
Q 001438 1016 GTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKA 1077 (1077)
Q Consensus 1016 G~I~f~nVsf~Y~~~~~~~VLk~vsl~I~~GekVaIVGrTGsGKSTLi~lL~Rfyd~~~G~i 1077 (1077)
--|++++|+++|.+ +.||+||||+|++||.+||+|+||||||||+.++.++..|++|+|
T Consensus 7 ~~I~vr~v~~~fG~---~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI 65 (263)
T COG1127 7 PLIEVRGVTKSFGD---RVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEI 65 (263)
T ss_pred ceEEEeeeeeecCC---EEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeE
Confidence 36999999999954 468999999999999999999999999999999999999999986
No 495
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.20 E-value=1.3e-11 Score=131.97 Aligned_cols=60 Identities=37% Similarity=0.591 Sum_probs=53.5
Q ss_pred EEEeeeeeeCCCCC-cccccccceeeeeCCCEEEEECCCCCCHHHHHHHHhhccCCCCCCC
Q 001438 1018 IELRGVHFSYPSRP-EVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKA 1077 (1077)
Q Consensus 1018 I~f~nVsf~Y~~~~-~~~VLk~vsl~I~~GekVaIVGrTGsGKSTLi~lL~Rfyd~~~G~i 1077 (1077)
|+++||+++|++.. ..++|+|+||+|++||++||+||+|||||||+++|.++++|++|+|
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i 61 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEV 61 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeE
Confidence 57899999996421 1358999999999999999999999999999999999999999975
No 496
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.19 E-value=2e-11 Score=133.72 Aligned_cols=63 Identities=24% Similarity=0.474 Sum_probs=57.4
Q ss_pred ccccEEEeeeeeeCCCCCcccccccceeeeeCCCEEEEECCCCCCHHHHHHHHhhccCCCCCCC
Q 001438 1014 VEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKA 1077 (1077)
Q Consensus 1014 ~~G~I~f~nVsf~Y~~~~~~~VLk~vsl~I~~GekVaIVGrTGsGKSTLi~lL~Rfyd~~~G~i 1077 (1077)
..|.|+++|++++|+.. ..++|+|+||+|+|||.+||+|++|||||||+++|.++++|++|+|
T Consensus 16 ~~~~i~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i 78 (257)
T cd03288 16 LGGEIKIHDLCVRYENN-LKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKI 78 (257)
T ss_pred CCceEEEEEEEEEeCCC-CCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeE
Confidence 46899999999999753 2358999999999999999999999999999999999999999975
No 497
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.19 E-value=1.9e-11 Score=130.90 Aligned_cols=60 Identities=32% Similarity=0.547 Sum_probs=54.1
Q ss_pred EEEeeeeeeCCCCC-cccccccceeeeeCCCEEEEECCCCCCHHHHHHHHhhccCCCCCCC
Q 001438 1018 IELRGVHFSYPSRP-EVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKA 1077 (1077)
Q Consensus 1018 I~f~nVsf~Y~~~~-~~~VLk~vsl~I~~GekVaIVGrTGsGKSTLi~lL~Rfyd~~~G~i 1077 (1077)
|+++||+++|++.. ..++|+|+||+|++||.+||+||+|||||||+++|.++++|++|+|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i 62 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEV 62 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEE
Confidence 68999999996421 2358999999999999999999999999999999999999999975
No 498
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.19 E-value=2.2e-11 Score=124.99 Aligned_cols=59 Identities=39% Similarity=0.778 Sum_probs=53.6
Q ss_pred EEEeeeeeeCCCCCcccccccceeeeeCCCEEEEECCCCCCHHHHHHHHhhccCCCCCCC
Q 001438 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKA 1077 (1077)
Q Consensus 1018 I~f~nVsf~Y~~~~~~~VLk~vsl~I~~GekVaIVGrTGsGKSTLi~lL~Rfyd~~~G~i 1077 (1077)
|+++|++++|+.. ..++++|+||+|++||.+||+|++|||||||+++|.++++|++|+|
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i 59 (173)
T cd03246 1 LEVENVSFRYPGA-EPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRV 59 (173)
T ss_pred CEEEEEEEEcCCC-CCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeE
Confidence 5799999999743 2357999999999999999999999999999999999999999975
No 499
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.19 E-value=2.1e-11 Score=136.26 Aligned_cols=61 Identities=20% Similarity=0.456 Sum_probs=54.9
Q ss_pred cEEEeeeeeeCCCCCc--ccccccceeeeeCCCEEEEECCCCCCHHHHHHHHhhccCCCCCCC
Q 001438 1017 TIELRGVHFSYPSRPE--VVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKA 1077 (1077)
Q Consensus 1017 ~I~f~nVsf~Y~~~~~--~~VLk~vsl~I~~GekVaIVGrTGsGKSTLi~lL~Rfyd~~~G~i 1077 (1077)
.|+++||+++|+...+ .++|+|+||+|++||.+||+|++|||||||+++|.+++.|++|+|
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i 64 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTI 64 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEE
Confidence 3899999999975322 358999999999999999999999999999999999999999975
No 500
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=99.18 E-value=3.7e-11 Score=145.79 Aligned_cols=76 Identities=20% Similarity=0.310 Sum_probs=71.6
Q ss_pred CCChHHHHHHHHHHHhccC----CCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchhHhhcCEEEEEECCE
Q 001438 520 QLSGGQKQRIAISRAIVKN----PSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRK 595 (1077)
Q Consensus 520 ~LSgGqkqri~lARal~~~----p~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~vtH~~~~~~~~d~i~~l~~G~ 595 (1077)
.|||||+||++|||+++.. |+++|||||+++||+.+...+.+.|+++.+++|+|+|||+++.+..||++++|++|.
T Consensus 440 ~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~~~~vi~iTH~~~~~~~ad~~~~l~k~~ 519 (563)
T TIGR00634 440 VASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSERHQVLCVTHLPQVAAHADAHFKVEKEG 519 (563)
T ss_pred hcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEEChHHHHHhcCeEEEEEEcc
Confidence 6999999999999999885 699999999999999999999999999878999999999999998899999999875
Done!