BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001439
(1077 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 186 bits (472), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 170/559 (30%), Positives = 254/559 (45%), Gaps = 72/559 (12%)
Query: 483 FLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLL 542
FL + L+++ +S K++ +F + + T+L+ L++ ++ VGP +P K L+ L
Sbjct: 215 FLGDCSALQHLDISGNKLSGDF-SRAISTCTELKLLNISSNQFVGP--IPPLPLKSLQYL 271
Query: 543 DVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFG------------------- 583
+++N F G IP + LT ++S N G++P FG
Sbjct: 272 SLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGEL 331
Query: 584 ------NMNFLQFLDLSNNQLTGEIPEHLAMGCVXXXXXXXXXXXXEGHMF---SRNFNL 634
M L+ LDLS N+ +GE+PE L G + +N
Sbjct: 332 PMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKN 391
Query: 635 TNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNH 694
T L L L+ N F G+IP +LS CS L L LS N LSG IP LG+L+ LR + + N
Sbjct: 392 T-LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNM 450
Query: 695 IEGPIPLEFCQLRILQILDISDNNISGSLPS-CYDFVCIEQVHLSKNMLHGQLKE--GTF 751
+EG IP E ++ L+ L + N+++G +PS + + + LS N L G++ + G
Sbjct: 451 LEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRL 510
Query: 752 FNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIXXXXXXXXXXXXXX 811
N L IL LS N +GNIP + L +L L N G +P
Sbjct: 511 EN---LAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFI 567
Query: 812 XXXXHGHIPS------CFDNTTL-------HERYNNGSSLQPFETSFVIMGGMDVDPKKQ 858
+ +I + C L E+ N S+ P + + GG
Sbjct: 568 AGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGH------- 620
Query: 859 ILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAG 918
S T+ G + LD+S N L G+IP +IG++ + LNL HN+++G
Sbjct: 621 ---------TSPTFDNNGS----MMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISG 667
Query: 919 PIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATF 978
IP +LR + LDLS NKL +IP + L L ++ NNLSG IPE QF TF
Sbjct: 668 SIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE-MGQFETF 726
Query: 979 NESSYEGNPFLCGPPLPIC 997
+ + NP LCG PLP C
Sbjct: 727 PPAKFLNNPGLCGYPLPRC 745
Score = 105 bits (263), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 115/413 (27%), Positives = 176/413 (42%), Gaps = 73/413 (17%)
Query: 456 HSLTTPNFQLQSLLLSSGYR------DGITFPKFLYNQHDLEYVRLSHIKMNE----EFP 505
+SL+ P L SL SG + + + FP + L + + + N
Sbjct: 107 NSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVV 166
Query: 506 NWLLENNT-KLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRL 564
W+L + +L+ L++ + + G + + L LDVS NNF IP +GD S L
Sbjct: 167 GWVLSDGCGELKHLAISGNKISG--DVDVSRCVNLEFLDVSSNNFSTGIPF-LGDC-SAL 222
Query: 565 TVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVXXXXXXXXXXXXE 624
+IS N L G + L+ L++S+NQ G IP
Sbjct: 223 QHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP-------------------- 262
Query: 625 GHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLS-KCSSLQGLFLSNNSLSGKIPRWLGNLT 683
L +L +L L N F GEIP LS C +L GL LS N G +P + G+ +
Sbjct: 263 -------LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCS 315
Query: 684 VLRHIIMPKNHIEGPIPLE-FCQLRILQILDISDNNISGSLP---------------SCY 727
+L + + N+ G +P++ ++R L++LD+S N SG LP S
Sbjct: 316 LLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSN 375
Query: 728 DF-------VC------IEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDR 774
+F +C +++++L N G++ T NC L+ L LS+N+L+G IP
Sbjct: 376 NFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPP-TLSNCSELVSLHLSFNYLSGTIPSS 434
Query: 775 VDGLSQLSYLILAHNNLEGEVPIXXXXXXXXXXXXXXXXXXHGHIPSCFDNTT 827
+ LS+L L L N LEGE+P G IPS N T
Sbjct: 435 LGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCT 487
Score = 105 bits (262), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 124/460 (26%), Positives = 194/460 (42%), Gaps = 71/460 (15%)
Query: 538 QLRLLDVSKNNFQGHIPL--EIGDILSRLTVFNISMNALDGSIPSSFG-NMNFLQFLDLS 594
L LD+S+N+ G + +G S L N+S N LD S G +N L+ LDLS
Sbjct: 98 SLTSLDLSRNSLSGPVTTLTSLGSC-SGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLS 156
Query: 595 NNQLTGE--IPEHLAMGCVXXXXXXXXXXXXEGHMFSRNFNLTNLIWLQLEGNHFVGEIP 652
N ++G + L+ GC L L + GN G++
Sbjct: 157 ANSISGANVVGWVLSDGC------------------------GELKHLAISGNKISGDV- 191
Query: 653 QSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQIL 712
+S+C +L+ L +S+N+ S IP +LG+ + L+H+ + N + G L++L
Sbjct: 192 -DVSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLL 249
Query: 713 DISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIP 772
+IS N G +P ++ + L++N G++ + C TL LDLS NH G +P
Sbjct: 250 NISSNQFVGPIPP-LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVP 308
Query: 773 DRVDGLSQLSYLILAHNNLEGEVPIXXXXXXXXXXXXXXXXXX-HGHIPSCFDNT----- 826
S L L L+ NN GE+P+ G +P N
Sbjct: 309 PFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLL 368
Query: 827 TLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLD 886
TL NN S I+ + +PK + E L
Sbjct: 369 TLDLSSNNFSG--------PILPNLCQNPKNTLQE-----------------------LY 397
Query: 887 LSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPY 946
L N G IPP + N +++ +L+LS N L+G IPS+ +L + L L N L +IP
Sbjct: 398 LQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQ 457
Query: 947 QLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESSYEGN 986
+L+ + TL + +N+L+G+IP + N S N
Sbjct: 458 ELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNN 497
Score = 72.8 bits (177), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 74/283 (26%), Positives = 121/283 (42%), Gaps = 47/283 (16%)
Query: 480 FPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQL 539
P+ L LE + L + E P+ L N T L +SL N+ L G I + L
Sbjct: 455 IPQELMYVKTLETLILDFNDLTGEIPSGL-SNCTNLNWISLSNNRLTGEIPKWIGRLENL 513
Query: 540 RLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSF----------------- 582
+L +S N+F G+IP E+GD S L +++ N +G+IP++
Sbjct: 514 AILKLSNNSFSGNIPAELGDCRS-LIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRY 572
Query: 583 -------------GNMNFLQFLDLSN---NQLTGEIPEHLAMGCVXXXXXXXXXXXXEGH 626
G N L+F + + N+L+ P ++ GH
Sbjct: 573 VYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNIT------------SRVYGGH 620
Query: 627 MFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLR 686
N ++++L + N G IP+ + L L L +N +SG IP +G+L L
Sbjct: 621 TSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLN 680
Query: 687 HIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDF 729
+ + N ++G IP L +L +D+S+NN+SG +P F
Sbjct: 681 ILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQF 723
Score = 56.2 bits (134), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 142/615 (23%), Positives = 232/615 (37%), Gaps = 84/615 (13%)
Query: 22 GWSEGCLNHERFALLQLKLFFIDPYNYLLDWVDDEGATDCCQWERVSCNNTMGRVVVLDL 81
G G L +L L I N ++ WV +G + + +S N G V D+
Sbjct: 139 GKVSGGLKLNSLEVLDLSANSISGAN-VVGWVLSDGCGEL-KHLAISGNKISGDV---DV 193
Query: 82 SQTHRGEYWYLNASLFT---PF----QQLESLDLRDNDIAGCVENEGLERLSRLSNLKML 134
S+ E+ ++++ F+ PF L+ LD+ N ++G +S + LK+L
Sbjct: 194 SRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFS----RAISTCTELKLL 249
Query: 135 NLVGNLFNNXXXXXXXXXXXXXXXXXXANRLKGSIDIKGPKRLS-RLNNLKVFDLSGNLF 193
N+ N F N+ G I P LS + L DLSGN F
Sbjct: 250 NISSNQF--VGPIPPLPLKSLQYLSLAENKFTGEI----PDFLSGACDTLTGLDLSGNHF 303
Query: 194 NNXXXXXXXXXXXXXXXXXYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSG 253
N G + + + L+ LD+S+NE E+P++ +
Sbjct: 304 YGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSG-ELPESLTN 362
Query: 254 LRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFXXXXXXXXQGFPHFKSLKEL 313
L SL TLDLS NNF P +L+EL
Sbjct: 363 LSA-------------------------SLLTLDLSSNNFSGPILPNLCQNPK-NTLQEL 396
Query: 314 YMDD---------------ARIALNTSFLQIIG---ESMPSIQYXXXXXXXXXXXXRTLD 355
Y+ + ++L+ SF + G S+ S+ +
Sbjct: 397 YLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIP 456
Query: 356 QGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVXXXXXXXXXXXXPLIHLTSIED 415
Q L + L+ L + NDL G +P L+N T+L + + + L ++
Sbjct: 457 QELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKW-IGRLENLAI 515
Query: 416 LILSDNHFQIPISLEPLFNHSRLKIFDXXXXXXXXXXXXSHSLTTPNFQLQSLLLSSGYR 475
L LS+N F I E L + L D + ++ F+ QS +++ +
Sbjct: 516 LKLSNNSFSGNIPAE-LGDCRSLIWLD------LNTNLFNGTIPAAMFK-QSGKIAANF- 566
Query: 476 DGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLE--NNTKLRQLSLVNDSLVGPFRLP- 532
I +++Y ++D EF E N R + + G P
Sbjct: 567 --IAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPT 624
Query: 533 IHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLD 592
++ + LD+S N G+IP EIG + L + N+ N + GSIP G++ L LD
Sbjct: 625 FDNNGSMMFLDMSYNMLSGYIPKEIGS-MPYLFILNLGHNDISGSIPDEVGDLRGLNILD 683
Query: 593 LSNNQLTGEIPEHLA 607
LS+N+L G IP+ ++
Sbjct: 684 LSSNKLDGRIPQAMS 698
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 186 bits (472), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 170/559 (30%), Positives = 254/559 (45%), Gaps = 72/559 (12%)
Query: 483 FLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLL 542
FL + L+++ +S K++ +F + + T+L+ L++ ++ VGP +P K L+ L
Sbjct: 218 FLGDCSALQHLDISGNKLSGDF-SRAISTCTELKLLNISSNQFVGP--IPPLPLKSLQYL 274
Query: 543 DVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFG------------------- 583
+++N F G IP + LT ++S N G++P FG
Sbjct: 275 SLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGEL 334
Query: 584 ------NMNFLQFLDLSNNQLTGEIPEHLAMGCVXXXXXXXXXXXXEGHMF---SRNFNL 634
M L+ LDLS N+ +GE+PE L G + +N
Sbjct: 335 PMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKN 394
Query: 635 TNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNH 694
T L L L+ N F G+IP +LS CS L L LS N LSG IP LG+L+ LR + + N
Sbjct: 395 T-LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNM 453
Query: 695 IEGPIPLEFCQLRILQILDISDNNISGSLPS-CYDFVCIEQVHLSKNMLHGQLKE--GTF 751
+EG IP E ++ L+ L + N+++G +PS + + + LS N L G++ + G
Sbjct: 454 LEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRL 513
Query: 752 FNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIXXXXXXXXXXXXXX 811
N L IL LS N +GNIP + L +L L N G +P
Sbjct: 514 EN---LAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFI 570
Query: 812 XXXXHGHIPS------CFDNTTL-------HERYNNGSSLQPFETSFVIMGGMDVDPKKQ 858
+ +I + C L E+ N S+ P + + GG
Sbjct: 571 AGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGH------- 623
Query: 859 ILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAG 918
S T+ G + LD+S N L G+IP +IG++ + LNL HN+++G
Sbjct: 624 ---------TSPTFDNNGS----MMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISG 670
Query: 919 PIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATF 978
IP +LR + LDLS NKL +IP + L L ++ NNLSG IPE QF TF
Sbjct: 671 SIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE-MGQFETF 729
Query: 979 NESSYEGNPFLCGPPLPIC 997
+ + NP LCG PLP C
Sbjct: 730 PPAKFLNNPGLCGYPLPRC 748
Score = 105 bits (263), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 115/413 (27%), Positives = 176/413 (42%), Gaps = 73/413 (17%)
Query: 456 HSLTTPNFQLQSLLLSSGYR------DGITFPKFLYNQHDLEYVRLSHIKMNE----EFP 505
+SL+ P L SL SG + + + FP + L + + + N
Sbjct: 110 NSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVV 169
Query: 506 NWLLENNT-KLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRL 564
W+L + +L+ L++ + + G + + L LDVS NNF IP +GD S L
Sbjct: 170 GWVLSDGCGELKHLAISGNKISG--DVDVSRCVNLEFLDVSSNNFSTGIPF-LGDC-SAL 225
Query: 565 TVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVXXXXXXXXXXXXE 624
+IS N L G + L+ L++S+NQ G IP
Sbjct: 226 QHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP-------------------- 265
Query: 625 GHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLS-KCSSLQGLFLSNNSLSGKIPRWLGNLT 683
L +L +L L N F GEIP LS C +L GL LS N G +P + G+ +
Sbjct: 266 -------LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCS 318
Query: 684 VLRHIIMPKNHIEGPIPLE-FCQLRILQILDISDNNISGSLP---------------SCY 727
+L + + N+ G +P++ ++R L++LD+S N SG LP S
Sbjct: 319 LLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSN 378
Query: 728 DF-------VC------IEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDR 774
+F +C +++++L N G++ T NC L+ L LS+N+L+G IP
Sbjct: 379 NFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPP-TLSNCSELVSLHLSFNYLSGTIPSS 437
Query: 775 VDGLSQLSYLILAHNNLEGEVPIXXXXXXXXXXXXXXXXXXHGHIPSCFDNTT 827
+ LS+L L L N LEGE+P G IPS N T
Sbjct: 438 LGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCT 490
Score = 105 bits (262), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 124/461 (26%), Positives = 194/461 (42%), Gaps = 71/461 (15%)
Query: 537 KQLRLLDVSKNNFQGHIPL--EIGDILSRLTVFNISMNALDGSIPSSFG-NMNFLQFLDL 593
L LD+S+N+ G + +G S L N+S N LD S G +N L+ LDL
Sbjct: 100 ASLTSLDLSRNSLSGPVTTLTSLGSC-SGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDL 158
Query: 594 SNNQLTGE--IPEHLAMGCVXXXXXXXXXXXXEGHMFSRNFNLTNLIWLQLEGNHFVGEI 651
S N ++G + L+ GC L L + GN G++
Sbjct: 159 SANSISGANVVGWVLSDGC------------------------GELKHLAISGNKISGDV 194
Query: 652 PQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQI 711
+S+C +L+ L +S+N+ S IP +LG+ + L+H+ + N + G L++
Sbjct: 195 --DVSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKL 251
Query: 712 LDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNI 771
L+IS N G +P ++ + L++N G++ + C TL LDLS NH G +
Sbjct: 252 LNISSNQFVGPIPP-LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAV 310
Query: 772 PDRVDGLSQLSYLILAHNNLEGEVPIXXXXXXXXXXXXXXXXXX-HGHIPSCFDNT---- 826
P S L L L+ NN GE+P+ G +P N
Sbjct: 311 PPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASL 370
Query: 827 -TLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGL 885
TL NN S I+ + +PK + E L
Sbjct: 371 LTLDLSSNNFSG--------PILPNLCQNPKNTLQE-----------------------L 399
Query: 886 DLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIP 945
L N G IPP + N +++ +L+LS N L+G IPS+ +L + L L N L +IP
Sbjct: 400 YLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIP 459
Query: 946 YQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESSYEGN 986
+L+ + TL + +N+L+G+IP + N S N
Sbjct: 460 QELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNN 500
Score = 72.8 bits (177), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 74/283 (26%), Positives = 121/283 (42%), Gaps = 47/283 (16%)
Query: 480 FPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQL 539
P+ L LE + L + E P+ L N T L +SL N+ L G I + L
Sbjct: 458 IPQELMYVKTLETLILDFNDLTGEIPSGL-SNCTNLNWISLSNNRLTGEIPKWIGRLENL 516
Query: 540 RLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSF----------------- 582
+L +S N+F G+IP E+GD S L +++ N +G+IP++
Sbjct: 517 AILKLSNNSFSGNIPAELGDCRS-LIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRY 575
Query: 583 -------------GNMNFLQFLDLSN---NQLTGEIPEHLAMGCVXXXXXXXXXXXXEGH 626
G N L+F + + N+L+ P ++ GH
Sbjct: 576 VYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNIT------------SRVYGGH 623
Query: 627 MFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLR 686
N ++++L + N G IP+ + L L L +N +SG IP +G+L L
Sbjct: 624 TSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLN 683
Query: 687 HIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDF 729
+ + N ++G IP L +L +D+S+NN+SG +P F
Sbjct: 684 ILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQF 726
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 142/615 (23%), Positives = 232/615 (37%), Gaps = 84/615 (13%)
Query: 22 GWSEGCLNHERFALLQLKLFFIDPYNYLLDWVDDEGATDCCQWERVSCNNTMGRVVVLDL 81
G G L +L L I N ++ WV +G + + +S N G V D+
Sbjct: 142 GKVSGGLKLNSLEVLDLSANSISGAN-VVGWVLSDGCGEL-KHLAISGNKISGDV---DV 196
Query: 82 SQTHRGEYWYLNASLFT---PF----QQLESLDLRDNDIAGCVENEGLERLSRLSNLKML 134
S+ E+ ++++ F+ PF L+ LD+ N ++G +S + LK+L
Sbjct: 197 SRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFS----RAISTCTELKLL 252
Query: 135 NLVGNLFNNXXXXXXXXXXXXXXXXXXANRLKGSIDIKGPKRLS-RLNNLKVFDLSGNLF 193
N+ N F N+ G I P LS + L DLSGN F
Sbjct: 253 NISSNQF--VGPIPPLPLKSLQYLSLAENKFTGEI----PDFLSGACDTLTGLDLSGNHF 306
Query: 194 NNXXXXXXXXXXXXXXXXXYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSG 253
N G + + + L+ LD+S+NE E+P++ +
Sbjct: 307 YGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSG-ELPESLTN 365
Query: 254 LRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFXXXXXXXXQGFPHFKSLKEL 313
L SL TLDLS NNF P +L+EL
Sbjct: 366 LSA-------------------------SLLTLDLSSNNFSGPILPNLCQNPK-NTLQEL 399
Query: 314 YMDD---------------ARIALNTSFLQIIG---ESMPSIQYXXXXXXXXXXXXRTLD 355
Y+ + ++L+ SF + G S+ S+ +
Sbjct: 400 YLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIP 459
Query: 356 QGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVXXXXXXXXXXXXPLIHLTSIED 415
Q L + L+ L + NDL G +P L+N T+L + + + L ++
Sbjct: 460 QELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKW-IGRLENLAI 518
Query: 416 LILSDNHFQIPISLEPLFNHSRLKIFDXXXXXXXXXXXXSHSLTTPNFQLQSLLLSSGYR 475
L LS+N F I E L + L D + ++ F+ QS +++ +
Sbjct: 519 LKLSNNSFSGNIPAE-LGDCRSLIWLD------LNTNLFNGTIPAAMFK-QSGKIAANF- 569
Query: 476 DGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLE--NNTKLRQLSLVNDSLVGPFRLP- 532
I +++Y ++D EF E N R + + G P
Sbjct: 570 --IAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPT 627
Query: 533 IHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLD 592
++ + LD+S N G+IP EIG + L + N+ N + GSIP G++ L LD
Sbjct: 628 FDNNGSMMFLDMSYNMLSGYIPKEIGS-MPYLFILNLGHNDISGSIPDEVGDLRGLNILD 686
Query: 593 LSNNQLTGEIPEHLA 607
LS+N+L G IP+ ++
Sbjct: 687 LSSNKLDGRIPQAMS 701
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 73.9 bits (180), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 71/257 (27%), Positives = 105/257 (40%), Gaps = 55/257 (21%)
Query: 765 NHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIXXXXXXXXXXXXXXXXXXHGHIPSCFD 824
N+L G IP + L+QL YL + H N+ G +P
Sbjct: 87 NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL------------------- 127
Query: 825 NTTLHERYNNGS-SLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLS 883
TL YN S +L P +S + G+ D + + +I +Y G L +
Sbjct: 128 -VTLDFSYNALSGTLPPSISSLPNLVGITFDGNR--------ISGAIPDSY-GSFSKLFT 177
Query: 884 GLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSN----------------- 926
+ +S NRL G IPP NL + ++LS N L G F +
Sbjct: 178 SMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFD 236
Query: 927 ------LRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNE 980
+N+ LDL N++ +P L +L L +V++NNL G+IP+ F+
Sbjct: 237 LGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDV 295
Query: 981 SSYEGNPFLCGPPLPIC 997
S+Y N LCG PLP C
Sbjct: 296 SAYANNKCLCGSPLPAC 312
Score = 66.6 bits (161), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 70/251 (27%), Positives = 109/251 (43%), Gaps = 53/251 (21%)
Query: 547 NNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHL 606
NN G IP I L++L I+ + G+IP + L LD S N L+G +P +
Sbjct: 87 NNLVGPIPPAIAK-LTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI 145
Query: 607 AMGCVXXXXXXXXXXXXEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSL-QGLF 665
+ +L NL+ + +GN G IP S S L +
Sbjct: 146 S-------------------------SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMT 180
Query: 666 LSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPS 725
+S N L+GKIP NL L + + +N +EG + F + Q + ++ N+++
Sbjct: 181 ISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLA----- 234
Query: 726 CYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLI 785
+D + +V LSKN L+G LDL N + G +P + L L L
Sbjct: 235 -FD---LGKVGLSKN-LNG---------------LDLRNNRIYGTLPQGLTQLKFLHSLN 274
Query: 786 LAHNNLEGEVP 796
++ NNL GE+P
Sbjct: 275 VSFNNLCGEIP 285
Score = 63.9 bits (154), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 63/225 (28%), Positives = 88/225 (39%), Gaps = 5/225 (2%)
Query: 480 FPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQL 539
P + L Y+ ++H ++ P++L + T L L ++L G I S L
Sbjct: 93 IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKT-LVTLDFSYNALSGTLPPSISSLPNL 151
Query: 540 RLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLT 599
+ N G IP G T IS N L G IP +F N+N L F+DLS N L
Sbjct: 152 VGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLE 210
Query: 600 GEIPEHLAMGCVXXXXXXXXXXXXEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCS 659
G+ + G + NL L L N G +PQ L++
Sbjct: 211 GD--ASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLK 268
Query: 660 SLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFC 704
L L +S N+L G+IP+ GNL N PL C
Sbjct: 269 FLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSPLPAC 312
Score = 58.2 bits (139), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 75/151 (49%), Gaps = 7/151 (4%)
Query: 651 IPQSLSKCSSLQGLFLSN-NSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRIL 709
IP SL+ L L++ N+L G IP + LT L ++ + ++ G IP Q++ L
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 710 QILDISDNNISGSL-PSCYDFVCIEQVHLSKNMLHGQLKE--GTFFNCLTLMILDLSYNH 766
LD S N +SG+L PS + + N + G + + G+F T M +S N
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMT--ISRNR 185
Query: 767 LNGNIPDRVDGLSQLSYLILAHNNLEGEVPI 797
L G IP L+ L+++ L+ N LEG+ +
Sbjct: 186 LTGKIPPTFANLN-LAFVDLSRNMLEGDASV 215
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 896 IPPQIGNLTKIQTLNLSH-NNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTL 954
IP + NL + L + NNL GPIP + L + L +++ +S IP L ++ TL
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 955 AVFSVAYNNLSGKIPERAAQFATFNESSYEGN 986
+YN LSG +P + +++GN
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGN 159
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 69/147 (46%), Gaps = 13/147 (8%)
Query: 656 SKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIE--GPIPLEFCQLRILQILD 713
SK S L SNN L+ + G+LT L +I+ N ++ I Q++ LQ LD
Sbjct: 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLD 380
Query: 714 ISDNNIS--GSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCL--TLMILDLSYNHLNG 769
IS N++S C + +++S N+L T F CL + +LDL N +
Sbjct: 381 ISQNSVSYDEKKGDCSWTKSLLSLNMSSNIL-----TDTIFRCLPPRIKVLDLHSNKIKS 435
Query: 770 NIPDRVDGLSQLSYLILAHNNLEGEVP 796
IP +V L L L +A N L+ VP
Sbjct: 436 -IPKQVVKLEALQELNVASNQLKS-VP 460
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 51/119 (42%), Gaps = 10/119 (8%)
Query: 826 TTLHERYNNGSSLQPFETSFVIMGGMDVDPKK------QILESFDFTTKSITYTYQGRVP 879
+ + E SLQ + S + D KK + L S + ++ +T T +P
Sbjct: 364 SKIAEMTTQMKSLQQLDIS---QNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP 420
Query: 880 SLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYN 938
+ LDL N+ I IP Q+ L +Q LN++ N L F L +++ + L N
Sbjct: 421 PRIKVLDLHSNK-IKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN 478
Score = 30.4 bits (67), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 885 LDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLA--GPIPSTFSNLRNIESLDLSYNKLSW 942
LD S N L + G+LT+++TL L N L I + +++++ LD+S N +S+
Sbjct: 329 LDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSY 388
Score = 29.6 bits (65), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 11/84 (13%)
Query: 526 VGPFRLPIHSHKQLRLLDVSKNNFQGHIPL------EIGDILSRLTV----FNISMNALD 575
+ R+ I SH +++ LD+S F + ++ I TV ++S NA D
Sbjct: 44 LSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCHPTVNLKHLDLSFNAFD 103
Query: 576 G-SIPSSFGNMNFLQFLDLSNNQL 598
I FGNM+ L+FL LS L
Sbjct: 104 ALPICKEFGNMSQLKFLGLSTTHL 127
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 38.1 bits (87), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 49/96 (51%), Gaps = 2/96 (2%)
Query: 896 IPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLA 955
+P ++ N + ++LS+N ++ +FSN+ + +L LSYN+L P L +L
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLR 105
Query: 956 VFSVAYNNLSGKIPERA-AQFATFNESSYEGNPFLC 990
+ S+ N++S +PE A + + + NP C
Sbjct: 106 LLSLHGNDIS-VVPEGAFNDLSALSHLAIGANPLYC 140
Score = 34.7 bits (78), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 640 LQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPI 699
L L+GN F +P+ LS L + LSNN +S + N+T L +I+ N +
Sbjct: 36 LYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIP 94
Query: 700 PLEFCQLRILQILDISDNNIS 720
P F L+ L++L + N+IS
Sbjct: 95 PRTFDGLKSLRLLSLHGNDIS 115
Score = 33.1 bits (74), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 42/83 (50%)
Query: 882 LSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLS 941
L+ +DLS NR+ N+T++ TL LS+N L P TF L+++ L L N +S
Sbjct: 56 LTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS 115
Query: 942 WKIPYQLVELNTLAVFSVAYNNL 964
+L+ L+ ++ N L
Sbjct: 116 VVPEGAFNDLSALSHLAIGANPL 138
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 38.1 bits (87), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Query: 900 IGNLTKIQTLNLSHNNLAG-PIPSTFSNLRNIESLDLSYNKL 940
IG+L ++ LN++HN + +P FSNL N+E LDLS NK+
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
Score = 33.5 bits (75), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 226 FDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNT 285
F+ LS+LE L M+ N +P + LR L++L L + + S + S SL
Sbjct: 441 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP--TAFNSLSSLQV 498
Query: 286 LDLSYNNF 293
L++S+NNF
Sbjct: 499 LNMSHNNF 506
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 72/171 (42%), Gaps = 6/171 (3%)
Query: 625 GHMFSRNFNLTNLIWLQLEGN--HFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNL 682
G+ FS +L +L +L L N F G QS +SL+ L LS N + +LG L
Sbjct: 338 GNAFSE-VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLG-L 395
Query: 683 TVLRHIIMPKNHIEGPIPLE-FCQLRILQILDISDNNISGSLPSCYD-FVCIEQVHLSKN 740
L H+ ++++ F LR L LDIS + + ++ +E + ++ N
Sbjct: 396 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN 455
Query: 741 MLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNL 791
F L LDLS L P + LS L L ++HNN
Sbjct: 456 SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 506
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 903 LTKIQTLNLSHNNLAGP-IPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAY 961
L+ ++ L ++ N+ +P F+ LRN+ LDLS +L P L++L V ++++
Sbjct: 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 503
Query: 962 NNL 964
NN
Sbjct: 504 NNF 506
Score = 31.2 bits (69), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 882 LSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLS 941
L+ LDLS +L P +L+ +Q LN+SHNN + L +++ LD S N +
Sbjct: 472 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM 531
Query: 942 WKIPYQLVEL-NTLAVFSVAYNNLS 965
+L ++LA ++ N+ +
Sbjct: 532 TSKKQELQHFPSSLAFLNLTQNDFA 556
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 38.1 bits (87), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 49/113 (43%), Gaps = 3/113 (2%)
Query: 882 LSGLDLSCNRLIGH--IPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNK 939
L LDLS N + Q+ NL+ +QTLNLSHN G F +E LDL++ +
Sbjct: 349 LQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTR 408
Query: 940 LSWKIPYQLVE-LNTLAVFSVAYNNLSGKIPERAAQFATFNESSYEGNPFLCG 991
L P + L+ L V ++ Y L A + +GN F G
Sbjct: 409 LHINAPQSPFQNLHFLQVLNLTYCFLDTSNQHLLAGLPVLRHLNLKGNHFQDG 461
Score = 35.4 bits (80), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 75/186 (40%), Gaps = 15/186 (8%)
Query: 107 DLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNXXXXXXXXXXXXXXXXXXANRLK 166
D+ D DI+ + L+ L +S ++ LNL + F++ A LK
Sbjct: 234 DIDDEDISSAM----LKGLCEMS-VESLNLQEHRFSDISSTTFQCFTQLQELDLTATHLK 288
Query: 167 GSIDIKGPKRLSRLNNLKVFDLSGNLFNNXXXXXXXXXXXXXXXXXYDNRLEGSIDVKEF 226
G P + LN LK LS N F+ N + + V
Sbjct: 289 GL-----PSGMKGLNLLKKLVLSVNHFDQLCQISAANFPSLTHLYIRGNVKKLHLGVGCL 343
Query: 227 DSLSNLEELDMSYNEIDNFEVPQACS-GLRKLSYLHLLRVGIRDGSKLL-QSMGSFPSLN 284
+ L NL+ LD+S+N+I E CS L+ LS+L L + + L Q+ P L
Sbjct: 344 EKLGNLQTLDLSHNDI---EASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLE 400
Query: 285 TLDLSY 290
LDL++
Sbjct: 401 LLDLAF 406
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 38.1 bits (87), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Query: 900 IGNLTKIQTLNLSHNNLAG-PIPSTFSNLRNIESLDLSYNKL 940
IG+L ++ LN++HN + +P FSNL N+E LDLS NK+
Sbjct: 144 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 185
Score = 33.5 bits (75), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 226 FDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNT 285
F+ LS+LE L M+ N +P + LR L++L L + + S + S SL
Sbjct: 465 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP--TAFNSLSSLQV 522
Query: 286 LDLSYNNF 293
L++S+NNF
Sbjct: 523 LNMSHNNF 530
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 903 LTKIQTLNLSHNNLAGP-IPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAY 961
L+ ++ L ++ N+ +P F+ LRN+ LDLS +L P L++L V ++++
Sbjct: 468 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 527
Query: 962 NNL 964
NN
Sbjct: 528 NNF 530
Score = 31.2 bits (69), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 882 LSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLS 941
L+ LDLS +L P +L+ +Q LN+SHNN + L +++ LD S N +
Sbjct: 496 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM 555
Query: 942 WKIPYQLVEL-NTLAVFSVAYNNLS 965
+L ++LA ++ N+ +
Sbjct: 556 TSKKQELQHFPSSLAFLNLTQNDFA 580
Score = 30.4 bits (67), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 71/171 (41%), Gaps = 6/171 (3%)
Query: 625 GHMFSRNFNLTNLIWLQLEGN--HFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNL 682
G+ FS +L +L +L L N F G QS SL+ L LS N + +LG L
Sbjct: 362 GNAFSE-VDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLG-L 419
Query: 683 TVLRHIIMPKNHIEGPIPLE-FCQLRILQILDISDNNISGSLPSCYD-FVCIEQVHLSKN 740
L H+ ++++ F LR L LDIS + + ++ +E + ++ N
Sbjct: 420 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN 479
Query: 741 MLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNL 791
F L LDLS L P + LS L L ++HNN
Sbjct: 480 SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 530
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 37.7 bits (86), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Query: 900 IGNLTKIQTLNLSHNNLAG-PIPSTFSNLRNIESLDLSYNKL 940
IG+L ++ LN++HN + +P FSNL N+E LDLS NK+
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 1/92 (1%)
Query: 903 LTKIQTLNLSHNNLAGP-IPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAY 961
L+ ++ L ++ N+ +P F+ LRN+ LDLS +L P L++L V ++A
Sbjct: 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMAS 503
Query: 962 NNLSGKIPERAAQFATFNESSYEGNPFLCGPP 993
N L + + + NP+ C P
Sbjct: 504 NQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 37.7 bits (86), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Query: 900 IGNLTKIQTLNLSHNNLAG-PIPSTFSNLRNIESLDLSYNKL 940
IG+L ++ LN++HN + +P FSNL N+E LDLS NK+
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 37.7 bits (86), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Query: 900 IGNLTKIQTLNLSHNNLAG-PIPSTFSNLRNIESLDLSYNKL 940
IG+L ++ LN++HN + +P FSNL N+E LDLS NK+
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 163
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 37.4 bits (85), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Query: 900 IGNLTKIQTLNLSHNNLAG-PIPSTFSNLRNIESLDLSYNKL 940
IG+L ++ LN++HN + +P FSNL N+E LDLS NK+
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 162
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 37.4 bits (85), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Query: 900 IGNLTKIQTLNLSHNNLAG-PIPSTFSNLRNIESLDLSYNKL 940
IG+L ++ LN++HN + +P FSNL N+E LDLS NK+
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 163
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 37.4 bits (85), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Query: 900 IGNLTKIQTLNLSHNNLAG-PIPSTFSNLRNIESLDLSYNKL 940
IG+L ++ LN++HN + +P FSNL N+E LDLS NK+
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 162
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 36.2 bits (82), Expect = 0.10, Method: Composition-based stats.
Identities = 31/89 (34%), Positives = 45/89 (50%), Gaps = 5/89 (5%)
Query: 710 QILDISDNNISGSLPSCYD-FVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLN 768
QIL + DN I+ P +D + +++++L N L G L G F + L +LDL N L
Sbjct: 43 QILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLT 101
Query: 769 GNIPDRV-DGLSQLSYLILAHNNLEGEVP 796
+P V D L L L + N L E+P
Sbjct: 102 -VLPSAVFDRLVHLKELFMCCNKLT-ELP 128
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 35.8 bits (81), Expect = 0.14, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Query: 862 SFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIP 921
S D ++K +T +P+ LDL N+L LTK++ L L+ N L
Sbjct: 20 SVDCSSKKLT-AIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPA 78
Query: 922 STFSNLRNIESLDLSYNKL 940
F L+N+E+L ++ NKL
Sbjct: 79 GIFKELKNLETLWVTDNKL 97
Score = 33.5 bits (75), Expect = 0.64, Method: Composition-based stats.
Identities = 28/92 (30%), Positives = 47/92 (51%), Gaps = 4/92 (4%)
Query: 703 FCQLRILQILDISDNNISGSLPSCY--DFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMIL 760
F +L L++L ++DN + +LP+ + +E + ++ N L L G F + L L
Sbjct: 57 FHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQA-LPIGVFDQLVNLAEL 114
Query: 761 DLSYNHLNGNIPDRVDGLSQLSYLILAHNNLE 792
L N L P D L++L+YL L +N L+
Sbjct: 115 RLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ 146
Score = 32.7 bits (73), Expect = 1.0, Method: Composition-based stats.
Identities = 31/96 (32%), Positives = 50/96 (52%), Gaps = 11/96 (11%)
Query: 882 LSGLDLSCNRLIGHIPPQI-GNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKL 940
L+ L L N+L +PP++ +LTK+ L+L +N L F L +++ L L N+L
Sbjct: 111 LAELRLDRNQL-KSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQL 169
Query: 941 SWKIPY----QLVELNTLAVFSVAYNNLSGKIPERA 972
++P +L EL TL + NN ++PE A
Sbjct: 170 K-RVPEGAFDKLTELKTLKL----DNNQLKRVPEGA 200
Score = 31.6 bits (70), Expect = 2.5, Method: Composition-based stats.
Identities = 33/122 (27%), Positives = 54/122 (44%), Gaps = 10/122 (8%)
Query: 488 HDLEYVRLSHIKMN--EEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQL---RLL 542
H L +RL ++ N + P + + L L + ++ L LPI QL L
Sbjct: 58 HRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQA---LPIGVFDQLVNLAEL 114
Query: 543 DVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEI 602
+ +N + +P + D L++LT ++ N L F + L+ L L NNQL +
Sbjct: 115 RLDRNQLKS-LPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLK-RV 172
Query: 603 PE 604
PE
Sbjct: 173 PE 174
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 35.8 bits (81), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 28/40 (70%), Gaps = 1/40 (2%)
Query: 900 IGNLTKIQTLNLSHNNL-AGPIPSTFSNLRNIESLDLSYN 938
IG L ++ LN++HN + + +P+ FSNL N+ +DLSYN
Sbjct: 119 IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN 158
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 53/124 (42%), Gaps = 9/124 (7%)
Query: 882 LSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLS 941
L+ LDLS +L L ++Q LN+SHNNL S ++ L ++ +LD S+N++
Sbjct: 470 LTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE 529
Query: 942 WKIPYQLVELNTLAVF--SVAYNNLSGKIPERAAQFATFNESSYEGNPFLCGPPLPICIS 999
L F S+A+ NL+ + F + E FL C +
Sbjct: 530 -------TSKGILQHFPKSLAFFNLTNNSVACICEHQKFLQWVKEQKQFLVNVEQMTCAT 582
Query: 1000 PTTM 1003
P M
Sbjct: 583 PVEM 586
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 35.8 bits (81), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 28/40 (70%), Gaps = 1/40 (2%)
Query: 900 IGNLTKIQTLNLSHNNL-AGPIPSTFSNLRNIESLDLSYN 938
IG L ++ LN++HN + + +P+ FSNL N+ +DLSYN
Sbjct: 124 IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN 163
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 53/124 (42%), Gaps = 9/124 (7%)
Query: 882 LSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLS 941
L+ LDLS +L L ++Q LN+SHNNL S ++ L ++ +LD S+N++
Sbjct: 475 LTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE 534
Query: 942 WKIPYQLVELNTLAVF--SVAYNNLSGKIPERAAQFATFNESSYEGNPFLCGPPLPICIS 999
L F S+A+ NL+ + F + E FL C +
Sbjct: 535 -------TSKGILQHFPKSLAFFNLTNNSVACICEHQKFLQWVKEQKQFLVNVEQMTCAT 587
Query: 1000 PTTM 1003
P M
Sbjct: 588 PVEM 591
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 35.0 bits (79), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 213 YDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRD-GS 271
+ N L G ID F L+ LE+LD+S N P GL L LHL R G+++ G
Sbjct: 63 HSNALAG-IDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGLQELGP 121
Query: 272 KLLQSMGSF 280
L + + +
Sbjct: 122 GLFRGLAAL 130
Score = 30.4 bits (67), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 63/159 (39%), Gaps = 4/159 (2%)
Query: 564 LTVFNISMNALDGSIPSSFGNMNFLQFLDLSNN-QLTGEIPEHL-AMGCVXXXXXXXXXX 621
LT+ + NAL G ++F + L+ LDLS+N QL P +G +
Sbjct: 57 LTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGL 116
Query: 622 XXEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGN 681
G R L L +L L+ N+ + +L LFL N +
Sbjct: 117 QELGPGLFRG--LAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRG 174
Query: 682 LTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNIS 720
L L +++ +NH+ P F L L L + NN+S
Sbjct: 175 LHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLS 213
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 34.7 bits (78), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 904 TKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNN 963
T I LNL+HN L + F+ + SLD+ +N +S P +L L V ++ +N
Sbjct: 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 84
Query: 964 LSGKIPERAAQFAT 977
LS ++ ++ F T
Sbjct: 85 LS-QLSDKTFAFCT 97
Score = 30.8 bits (68), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 22/36 (61%)
Query: 757 LMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLE 792
L +LDLSYN+LN D L QL Y L +NN++
Sbjct: 250 LTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQ 285
Score = 29.6 bits (65), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 46/110 (41%), Gaps = 7/110 (6%)
Query: 864 DFTTKSITYTYQGRVP-------SLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNL 916
+ T ++T+ R+P S L+ LD+ N + P L ++ LNL HN L
Sbjct: 26 NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNEL 85
Query: 917 AGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSG 966
+ TF+ N+ L L N + V+ L +++N LS
Sbjct: 86 SQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSS 135
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 34.7 bits (78), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 904 TKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNN 963
T I LNL+HN L + F+ + SLD+ +N +S P +L L V ++ +N
Sbjct: 35 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 94
Query: 964 LSGKIPERAAQFAT 977
LS ++ ++ F T
Sbjct: 95 LS-QLSDKTFAFCT 107
Score = 30.8 bits (68), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 22/36 (61%)
Query: 757 LMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLE 792
L +LDLSYN+LN D L QL Y L +NN++
Sbjct: 260 LTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQ 295
Score = 29.6 bits (65), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 46/110 (41%), Gaps = 7/110 (6%)
Query: 864 DFTTKSITYTYQGRVP-------SLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNL 916
+ T ++T+ R+P S L+ LD+ N + P L ++ LNL HN L
Sbjct: 36 NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNEL 95
Query: 917 AGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSG 966
+ TF+ N+ L L N + V+ L +++N LS
Sbjct: 96 SQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSS 145
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 34.7 bits (78), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 904 TKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNN 963
T I LNL+HN L + F+ + SLD+ +N +S P +L L V ++ +N
Sbjct: 30 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 89
Query: 964 LSGKIPERAAQFAT 977
LS ++ ++ F T
Sbjct: 90 LS-QLSDKTFAFCT 102
Score = 30.8 bits (68), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 22/36 (61%)
Query: 757 LMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLE 792
L +LDLSYN+LN D L QL Y L +NN++
Sbjct: 255 LTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQ 290
Score = 29.6 bits (65), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 46/110 (41%), Gaps = 7/110 (6%)
Query: 864 DFTTKSITYTYQGRVP-------SLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNL 916
+ T ++T+ R+P S L+ LD+ N + P L ++ LNL HN L
Sbjct: 31 NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNEL 90
Query: 917 AGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSG 966
+ TF+ N+ L L N + V+ L +++N LS
Sbjct: 91 SQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSS 140
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 34.7 bits (78), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 70/178 (39%), Gaps = 28/178 (15%)
Query: 231 NLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSY 290
NL+E + D F+ LR L L L + +R + + PSLNTL+L
Sbjct: 41 NLQENSIQVIRTDTFK------HLRHLEILQLSKNLVRKIE--VGAFNGLPSLNTLELFD 92
Query: 291 NNFXXXXXXXXQGFPHFKSLKELYMDDARI------ALNT--SFLQIIGESMPSIQYXXX 342
N Q F + L+EL++ + I A N S ++ + ++Y
Sbjct: 93 NRLTTVPT---QAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISE 149
Query: 343 XXXXXXXXXRTLDQGLC---------PLVHLQELHMADNDLRGSLPWCLANMTSLRIL 391
R L+ G+C LV L+EL ++ N L P +TSLR L
Sbjct: 150 AAFEGLVNLRYLNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKL 207
Score = 33.1 bits (74), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 69/180 (38%), Gaps = 32/180 (17%)
Query: 166 KGSIDIKGPKRLSRLNNLKVFDLSGNLFNNXXXXXXXXXXXXXXXXXYDNRLEGSIDVKE 225
+ SI + L +L++ LS NL +DNRL ++ +
Sbjct: 44 ENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLT-TVPTQA 102
Query: 226 FDSLSNLEELDMSYNEIDNF------EVPQ------------------ACSGLRKLSYLH 261
F+ LS L EL + N I++ VP A GL L YL+
Sbjct: 103 FEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLN 162
Query: 262 LLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFXXXXXXXXQGFPHFKSLKELYMDDARIA 321
L ++D + ++ + L L+LS N QG SL++L++ A++A
Sbjct: 163 LGMCNLKD----IPNLTALVRLEELELSGNRLDLIRPGSFQG---LTSLRKLWLMHAQVA 215
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 882 LSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLS 941
L L+LS NRL P LT ++ L L H +A + F +L+++E L+LS+N L
Sbjct: 180 LEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNL- 238
Query: 942 WKIPYQL 948
+P+ L
Sbjct: 239 MSLPHDL 245
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 68/164 (41%), Gaps = 25/164 (15%)
Query: 640 LQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRW------------LGNLTVLRH 687
L+L N Q+ S L+ L+L NN + IP + LG L L +
Sbjct: 88 LELFDNRLTTVPTQAFEYLSKLRELWLRNNPIES-IPSYAFNRVPSLRRLDLGELKRLEY 146
Query: 688 IIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLK 747
I + EG + L + L + + DI P+ V +E++ LS N L ++
Sbjct: 147 I--SEAAFEGLVNLRYLNLGMCNLKDI---------PNLTALVRLEELELSGNRL-DLIR 194
Query: 748 EGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNL 791
G+F +L L L + + + D L L L L+HNNL
Sbjct: 195 PGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNL 238
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 34.3 bits (77), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 70/178 (39%), Gaps = 28/178 (15%)
Query: 231 NLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSY 290
NL+E + D F+ LR L L L + +R + + PSLNTL+L
Sbjct: 41 NLQENSIQVIRTDTFK------HLRHLEILQLSKNLVRKIE--VGAFNGLPSLNTLELFD 92
Query: 291 NNFXXXXXXXXQGFPHFKSLKELYMDDARI------ALNT--SFLQIIGESMPSIQYXXX 342
N Q F + L+EL++ + I A N S ++ + ++Y
Sbjct: 93 NRLTTVPT---QAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISE 149
Query: 343 XXXXXXXXXRTLDQGLC---------PLVHLQELHMADNDLRGSLPWCLANMTSLRIL 391
R L+ G+C LV L+EL ++ N L P +TSLR L
Sbjct: 150 AAFEGLVNLRYLNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKL 207
Score = 33.1 bits (74), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 882 LSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLS 941
L L+LS NRL P LT ++ L L H +A + F +L+++E L+LS+N L
Sbjct: 180 LEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLM 239
Query: 942 WKIPYQL 948
+P+ L
Sbjct: 240 -SLPHDL 245
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 69/180 (38%), Gaps = 32/180 (17%)
Query: 166 KGSIDIKGPKRLSRLNNLKVFDLSGNLFNNXXXXXXXXXXXXXXXXXYDNRLEGSIDVKE 225
+ SI + L +L++ LS NL +DNRL ++ +
Sbjct: 44 ENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRL-TTVPTQA 102
Query: 226 FDSLSNLEELDMSYNEIDNF------EVPQ------------------ACSGLRKLSYLH 261
F+ LS L EL + N I++ VP A GL L YL+
Sbjct: 103 FEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLN 162
Query: 262 LLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFXXXXXXXXQGFPHFKSLKELYMDDARIA 321
L ++D + ++ + L L+LS N QG SL++L++ A++A
Sbjct: 163 LGMCNLKD----IPNLTALVRLEELELSGNRLDLIRPGSFQG---LTSLRKLWLMHAQVA 215
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 68/164 (41%), Gaps = 25/164 (15%)
Query: 640 LQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRW------------LGNLTVLRH 687
L+L N Q+ S L+ L+L NN + IP + LG L L +
Sbjct: 88 LELFDNRLTTVPTQAFEYLSKLRELWLRNNPIES-IPSYAFNRVPSLRRLDLGELKRLEY 146
Query: 688 IIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLK 747
I + EG + L + L + + DI P+ V +E++ LS N L ++
Sbjct: 147 I--SEAAFEGLVNLRYLNLGMCNLKDI---------PNLTALVRLEELELSGNRL-DLIR 194
Query: 748 EGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNL 791
G+F +L L L + + + D L L L L+HNNL
Sbjct: 195 PGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNL 238
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 33.9 bits (76), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 6/77 (7%)
Query: 905 KIQTLNLSHNNLAG-PIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNN 963
KIQ + + +NNL P+ ++ + + L+ YN+L K+P E+ LA ++AYN
Sbjct: 306 KIQIIYIGYNNLKTFPVETSLQKXKKLGXLECLYNQLEGKLPAFGSEI-KLASLNLAYN- 363
Query: 964 LSGKIPERAAQFATFNE 980
+I E A F F E
Sbjct: 364 ---QITEIPANFCGFTE 377
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 33.9 bits (76), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 51/96 (53%), Gaps = 4/96 (4%)
Query: 846 VIMGGMDVDPKKQILESF-DFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLT 904
+I+G M P LES D++ +++T+ + +P L LS N + P I L+
Sbjct: 20 LIVGSMT--PFSNELESMVDYSNRNLTHVPKD-LPPRTKALSLSQNSISELRMPDISFLS 76
Query: 905 KIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKL 940
+++ L LSHN + F +++E LD+S+N+L
Sbjct: 77 ELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRL 112
Score = 30.8 bits (68), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 27/47 (57%)
Query: 247 VPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNF 293
V Q CS L++L L L R G+++ K+ + SL TLD+S N+
Sbjct: 369 VFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSL 415
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 33.9 bits (76), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 22/38 (57%)
Query: 903 LTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKL 940
LT + LNL+HN L F L N+ LDLSYN+L
Sbjct: 132 LTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQL 169
Score = 33.9 bits (76), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 62/119 (52%), Gaps = 10/119 (8%)
Query: 679 LGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLS 738
L LT L ++I+ N ++ F +L L+ L + +N + SLP D V + +L+
Sbjct: 81 LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQ-SLP---DGVFDKLTNLT 136
Query: 739 K-NMLHGQLK---EGTFFNCLTLMILDLSYNHLNGNIPDRV-DGLSQLSYLILAHNNLE 792
N+ H QL+ +G F L LDLSYN L ++P+ V D L+QL L L N L+
Sbjct: 137 YLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ-SLPEGVFDKLTQLKDLRLYQNQLK 194
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 71/173 (41%), Gaps = 28/173 (16%)
Query: 626 HMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVL 685
H S LTNL +L L GN QSL G+F LT L
Sbjct: 76 HDISALKELTNLTYLILTGNQL-----QSLP-----NGVF--------------DKLTNL 111
Query: 686 RHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYD-FVCIEQVHLSKNMLHG 744
+ +++ +N ++ F +L L L+++ N + +D + ++ LS N L
Sbjct: 112 KELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQS 171
Query: 745 QLKEGTFFNCLTLMILDLSYNHLNGNIPDRV-DGLSQLSYLILAHNNLEGEVP 796
L EG F L L L N L ++PD V D L+ L Y+ L N + P
Sbjct: 172 -LPEGVFDKLTQLKDLRLYQNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCP 222
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 33.9 bits (76), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 36/90 (40%)
Query: 901 GNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVA 960
G L + L L N L G P+ F +I+ L L NK+ + L+ L ++
Sbjct: 51 GRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLY 110
Query: 961 YNNLSGKIPERAAQFATFNESSYEGNPFLC 990
N +S +P + + NPF C
Sbjct: 111 DNQISCVMPGSFEHLNSLTSLNLASNPFNC 140
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 33.5 bits (75), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 91/194 (46%), Gaps = 41/194 (21%)
Query: 633 NLTNLIWLQLEGNHFVGEIPQSLSKCS----SLQGLFLSNNSL-----SGKIPRWLGNLT 683
+L +L +L L N V E ++ S C SLQ L LS N L +G+I L NLT
Sbjct: 332 HLKSLEFLDLSENLMVEEYLKN-SACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLT 390
Query: 684 VL---RHIIMP-KNHIEGPIPLEF-------------CQLRILQILDISDNNI---SGSL 723
L R+ P + + P + F C + L++LD+S+NN+ S L
Sbjct: 391 SLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFL 450
Query: 724 PSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRV-DGLSQLS 782
P ++++++S+N L L + + F L+++ +S N L ++PD + D L+ L
Sbjct: 451 PR------LQELYISRNKLK-TLPDASLFP--VLLVMKISRNQLK-SVPDGIFDRLTSLQ 500
Query: 783 YLILAHNNLEGEVP 796
+ L N + P
Sbjct: 501 KIWLHTNPWDCSCP 514
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 33.1 bits (74), Expect = 0.77, Method: Composition-based stats.
Identities = 27/97 (27%), Positives = 43/97 (44%), Gaps = 15/97 (15%)
Query: 900 IGNLTKIQTLNLSHNNLAGPIPS-TFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFS 958
+GNLT + H N +P F L +++ L L N+++ P+ +L L
Sbjct: 151 LGNLTHL----FLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLY 206
Query: 959 VAYNNLS-----GKIPERAAQFATFNESSYEGNPFLC 990
+ NNLS P RA Q+ N+ NP++C
Sbjct: 207 LFANNLSALPTEALAPLRALQYLRLND-----NPWVC 238
Score = 32.7 bits (73), Expect = 1.1, Method: Composition-based stats.
Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 221 IDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRD-GSKLLQSMGS 279
ID F L+ LE+LD+S N P GL +L LHL R G+++ G L + + +
Sbjct: 70 IDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAA 129
Query: 280 FPSLNTLD 287
L D
Sbjct: 130 LQYLYLQD 137
Score = 31.2 bits (69), Expect = 3.2, Method: Composition-based stats.
Identities = 44/176 (25%), Positives = 68/176 (38%), Gaps = 5/176 (2%)
Query: 552 HIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNN-QLTGEIPEHL-AMG 609
H+P LT+ + N L ++F + L+ LDLS+N QL P +G
Sbjct: 45 HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLG 104
Query: 610 CVXXXXXXXXXXXXEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNN 669
+ G R L L +L L+ N + +L LFL N
Sbjct: 105 RLHTLHLDRCGLQELGPGLFR--GLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGN 162
Query: 670 SLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPS 725
+S R L L +++ +N + P F L L L + NN+S +LP+
Sbjct: 163 RISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS-ALPT 217
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 33.1 bits (74), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 4/90 (4%)
Query: 889 CNRL-IGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQ 947
C+ L + HIP + + I LNL+HN L P+ F+ + LD +N +S P
Sbjct: 11 CSHLKLTHIPDDLP--SNITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPEL 68
Query: 948 LVELNTLAVFSVAYNNLSGKIPERAAQFAT 977
L L V ++ +N LS +I ++ F T
Sbjct: 69 CQILPLLKVLNLQHNELS-QISDQTFVFCT 97
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 49/115 (42%), Gaps = 5/115 (4%)
Query: 680 GNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPS-CYDFVCIEQVHLS 738
N+TVL + N + P F + L ILD N+IS P C ++ ++L
Sbjct: 25 SNITVLN---LTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQ 81
Query: 739 KNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEG 793
N L Q+ + TF C L LDL N ++ + L L L+HN L
Sbjct: 82 HNEL-SQISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGLSS 135
Score = 30.4 bits (67), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 60/135 (44%), Gaps = 7/135 (5%)
Query: 659 SSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFC---QLRILQILDIS 715
SSL+ L LS+N L P + L +++ + + + C +Q L ++
Sbjct: 171 SSLRKLDLSSNPLKEFSPGCFQTIGKLFALLLNNAQLNPHLTEKLCWELSNTSIQNLSLA 230
Query: 716 DNNISGSLPSCYD---FVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIP 772
+N + + S + + + Q+ LS N LH + G+F +L L L YN++ P
Sbjct: 231 NNQLLATSESTFSGLKWTNLTQLDLSYNNLH-DVGNGSFSYLPSLRYLSLEYNNIQRLSP 289
Query: 773 DRVDGLSQLSYLILA 787
GLS L YL L
Sbjct: 290 RSFYGLSNLRYLSLK 304
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 33.1 bits (74), Expect = 0.80, Method: Composition-based stats.
Identities = 27/97 (27%), Positives = 43/97 (44%), Gaps = 15/97 (15%)
Query: 900 IGNLTKIQTLNLSHNNLAGPIPS-TFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFS 958
+GNLT + H N +P F L +++ L L N+++ P+ +L L
Sbjct: 152 LGNLTHL----FLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLY 207
Query: 959 VAYNNLS-----GKIPERAAQFATFNESSYEGNPFLC 990
+ NNLS P RA Q+ N+ NP++C
Sbjct: 208 LFANNLSALPTEALAPLRALQYLRLND-----NPWVC 239
Score = 32.7 bits (73), Expect = 1.1, Method: Composition-based stats.
Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 221 IDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRD-GSKLLQSMGS 279
ID F L+ LE+LD+S N P GL +L LHL R G+++ G L + + +
Sbjct: 71 IDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAA 130
Query: 280 FPSLNTLD 287
L D
Sbjct: 131 LQYLYLQD 138
Score = 31.2 bits (69), Expect = 3.3, Method: Composition-based stats.
Identities = 44/176 (25%), Positives = 68/176 (38%), Gaps = 5/176 (2%)
Query: 552 HIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNN-QLTGEIPEHL-AMG 609
H+P LT+ + N L ++F + L+ LDLS+N QL P +G
Sbjct: 46 HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLG 105
Query: 610 CVXXXXXXXXXXXXEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNN 669
+ G R L L +L L+ N + +L LFL N
Sbjct: 106 RLHTLHLDRCGLQELGPGLFR--GLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGN 163
Query: 670 SLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPS 725
+S R L L +++ +N + P F L L L + NN+S +LP+
Sbjct: 164 RISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS-ALPT 218
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 33.1 bits (74), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 38/83 (45%)
Query: 882 LSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLS 941
L L+L+ N + P NL ++TL L N L F+ L N+ LD+S NK+
Sbjct: 58 LEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIV 117
Query: 942 WKIPYQLVELNTLAVFSVAYNNL 964
+ Y +L L V N+L
Sbjct: 118 ILLDYMFQDLYNLKSLEVGDNDL 140
Score = 30.0 bits (66), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 32/64 (50%)
Query: 878 VPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSY 937
+P+ LDL NR+ + + ++ L L+ N ++ P F+NL N+ +L L
Sbjct: 30 IPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS 89
Query: 938 NKLS 941
N+L
Sbjct: 90 NRLK 93
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 33.1 bits (74), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 226 FDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNT 285
F+ LS+LE L M+ N +P + LR L++L L + + S + S SL
Sbjct: 146 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP--TAFNSLSSLQV 203
Query: 286 LDLSYNNF 293
L++S+NNF
Sbjct: 204 LNMSHNNF 211
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 903 LTKIQTLNLSHNNLAGP-IPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAY 961
L+ ++ L ++ N+ +P F+ LRN+ LDLS +L P L++L V ++++
Sbjct: 149 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 208
Query: 962 NNL 964
NN
Sbjct: 209 NNF 211
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 66/162 (40%), Gaps = 5/162 (3%)
Query: 634 LTNLIWLQLEGN--HFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMP 691
LT L L L N F G QS +SL+ L LS N + +LG L L H+
Sbjct: 51 LTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLG-LEQLEHLDFQ 109
Query: 692 KNHIEGPIPLE-FCQLRILQILDISDNNISGSLPSCYD-FVCIEQVHLSKNMLHGQLKEG 749
++++ F LR L LDIS + + ++ +E + ++ N
Sbjct: 110 HSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD 169
Query: 750 TFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNL 791
F L LDLS L P + LS L L ++HNN
Sbjct: 170 IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 211
Score = 30.8 bits (68), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
Query: 882 LSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLS 941
L+ LDLS +L P +L+ +Q LN+SHNN + L +++ LD S N +
Sbjct: 177 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM 236
Query: 942 WKIPYQLVEL-NTLAVFSVAYNNLSGKIPERA 972
+L ++LA ++ N+ + ++
Sbjct: 237 TSKKQELQHFPSSLAFLNLTQNDFACTCEHQS 268
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 33.1 bits (74), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 32/60 (53%)
Query: 882 LSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLS 941
+ LDLS NR+ + +Q L L+ N + +FS+L ++E LDLSYN LS
Sbjct: 54 VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 113
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 32/60 (53%)
Query: 882 LSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLS 941
+ LDLS NR+ + +Q L L+ N + +FS+L ++E LDLSYN LS
Sbjct: 28 VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 87
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 76/166 (45%), Gaps = 14/166 (8%)
Query: 633 NLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPK 692
NLT L L + N V +I L+K ++L+ L +NN +S P LG LT L + +
Sbjct: 171 NLTTLERLDISSNK-VSDI-SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNG 226
Query: 693 NHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFF 752
N ++ L L L LD+++N IS P + ++ L N Q+ +
Sbjct: 227 NQLKDIGTL--ASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGAN----QISNISPL 279
Query: 753 NCLTLMI-LDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPI 797
LT + L+L+ N L P + L L+YL L NN+ P+
Sbjct: 280 AGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPV 323
Score = 31.2 bits (69), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Query: 222 DVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHL 262
D+ SL+NL +LD++ N+I N SGL KL+ L L
Sbjct: 231 DIGTLASLTNLTDLDLANNQISNLA---PLSGLTKLTELKL 268
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 76/166 (45%), Gaps = 14/166 (8%)
Query: 633 NLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPK 692
NLT L L + N V +I L+K ++L+ L +NN +S P LG LT L + +
Sbjct: 171 NLTTLERLDISSNK-VSDI-SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNG 226
Query: 693 NHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFF 752
N ++ L L L LD+++N IS P + ++ L N Q+ +
Sbjct: 227 NQLKDIGTL--ASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGAN----QISNISPL 279
Query: 753 NCLTLMI-LDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPI 797
LT + L+L+ N L P + L L+YL L NN+ P+
Sbjct: 280 AGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPV 323
Score = 31.2 bits (69), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Query: 222 DVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHL 262
D+ SL+NL +LD++ N+I N SGL KL+ L L
Sbjct: 231 DIGTLASLTNLTDLDLANNQISNLA---PLSGLTKLTELKL 268
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 76/166 (45%), Gaps = 14/166 (8%)
Query: 633 NLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPK 692
NLT L L + N V +I L+K ++L+ L +NN +S P LG LT L + +
Sbjct: 170 NLTTLERLDISSNK-VSDI-SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNG 225
Query: 693 NHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFF 752
N ++ L L L LD+++N IS P + ++ L N Q+ +
Sbjct: 226 NQLKDIGTL--ASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGAN----QISNISPL 278
Query: 753 NCLTLMI-LDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPI 797
LT + L+L+ N L P + L L+YL L NN+ P+
Sbjct: 279 AGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPV 322
Score = 31.2 bits (69), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Query: 222 DVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHL 262
D+ SL+NL +LD++ N+I N SGL KL+ L L
Sbjct: 230 DIGTLASLTNLTDLDLANNQISNLA---PLSGLTKLTELKL 267
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 76/166 (45%), Gaps = 14/166 (8%)
Query: 633 NLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPK 692
NLT L L + N V +I L+K ++L+ L +NN +S P LG LT L + +
Sbjct: 171 NLTTLERLDISSNK-VSDI-SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNG 226
Query: 693 NHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFF 752
N ++ L L L LD+++N IS P + ++ L N Q+ +
Sbjct: 227 NQLKDIGTL--ASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGAN----QISNISPL 279
Query: 753 NCLTLMI-LDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPI 797
LT + L+L+ N L P + L L+YL L NN+ P+
Sbjct: 280 AGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPV 323
Score = 31.2 bits (69), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Query: 222 DVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHL 262
D+ SL+NL +LD++ N+I N SGL KL+ L L
Sbjct: 231 DIGTLASLTNLTDLDLANNQISNLA---PLSGLTKLTELKL 268
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 76/166 (45%), Gaps = 14/166 (8%)
Query: 633 NLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPK 692
NLT L L + N V +I L+K ++L+ L +NN +S P LG LT L + +
Sbjct: 170 NLTTLERLDISSNK-VSDI-SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNG 225
Query: 693 NHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFF 752
N ++ L L L LD+++N IS P + ++ L N Q+ +
Sbjct: 226 NQLKDIGTL--ASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGAN----QISNISPL 278
Query: 753 NCLTLMI-LDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPI 797
LT + L+L+ N L P + L L+YL L NN+ P+
Sbjct: 279 AGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPV 322
Score = 31.2 bits (69), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Query: 222 DVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHL 262
D+ SL+NL +LD++ N+I N SGL KL+ L L
Sbjct: 230 DIGTLASLTNLTDLDLANNQISNLA---PLSGLTKLTELKL 267
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 91/194 (46%), Gaps = 41/194 (21%)
Query: 633 NLTNLIWLQLEGNHFVGEIPQSLSKCS----SLQGLFLSNNSL-----SGKIPRWLGNLT 683
+L +L +L L N V E ++ S C SLQ L LS N L +G+I L NLT
Sbjct: 358 HLKSLEFLDLSENLMVEEYLKN-SACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLT 416
Query: 684 VL---RHIIMP-KNHIEGPIPLEF-------------CQLRILQILDISDNNI---SGSL 723
L R+ P + + P + F C + L++LD+S+NN+ S L
Sbjct: 417 SLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFL 476
Query: 724 PSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRV-DGLSQLS 782
P ++++++S+N L L + + F L+++ ++ N L ++PD + D L+ L
Sbjct: 477 PR------LQELYISRNKLK-TLPDASLFP--VLLVMKIASNQLK-SVPDGIFDRLTSLQ 526
Query: 783 YLILAHNNLEGEVP 796
+ L N + P
Sbjct: 527 KIWLHTNPWDCSCP 540
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 76/166 (45%), Gaps = 14/166 (8%)
Query: 633 NLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPK 692
NLT L L + N V +I L+K ++L+ L +NN +S P LG LT L + +
Sbjct: 175 NLTTLERLDISSNK-VSDI-SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNG 230
Query: 693 NHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFF 752
N ++ L L L LD+++N IS P + ++ L N Q+ +
Sbjct: 231 NQLKDIGTL--ASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGAN----QISNISPL 283
Query: 753 NCLTLMI-LDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPI 797
LT + L+L+ N L P + L L+YL L NN+ P+
Sbjct: 284 AGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPV 327
Score = 31.2 bits (69), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Query: 222 DVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHL 262
D+ SL+NL +LD++ N+I N SGL KL+ L L
Sbjct: 235 DIGTLASLTNLTDLDLANNQISNLA---PLSGLTKLTELKL 272
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 76/166 (45%), Gaps = 14/166 (8%)
Query: 633 NLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPK 692
NLT L L + N V +I L+K ++L+ L +NN +S P LG LT L + +
Sbjct: 174 NLTTLERLDISSNK-VSDI-SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNG 229
Query: 693 NHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFF 752
N ++ L L L LD+++N IS P + ++ L N Q+ +
Sbjct: 230 NQLKDIGTL--ASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGAN----QISNISPL 282
Query: 753 NCLTLMI-LDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPI 797
LT + L+L+ N L P + L L+YL L NN+ P+
Sbjct: 283 AGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPV 326
Score = 31.2 bits (69), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Query: 222 DVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHL 262
D+ SL+NL +LD++ N+I N SGL KL+ L L
Sbjct: 234 DIGTLASLTNLTDLDLANNQISNLA---PLSGLTKLTELKL 271
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 66/155 (42%), Gaps = 11/155 (7%)
Query: 168 SIDIKGPKRLSRLNNLKVFDLSGNLFNNXXXXXXXXXXXXXXXXXYDNRLEGSIDVKEFD 227
+I+I L+ LN L++FD N +N +E SI F+
Sbjct: 102 TIEIGAFNGLANLNTLELFD---NRLTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFN 157
Query: 228 SLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLD 287
+ +L LD+ + ++ A GL L YL+L +R+ + ++ L+ LD
Sbjct: 158 RIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE----IPNLTPLIKLDELD 213
Query: 288 LSYNNFXXXXXXXXQGFPHFKSLKELYMDDARIAL 322
LS N+ QG H L++L+M ++I +
Sbjct: 214 LSGNHLSAIRPGSFQGLMH---LQKLWMIQSQIQV 245
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 1/94 (1%)
Query: 899 QIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVE-LNTLAVF 957
Q+ NL +Q LNLS+N G F +E LD+++ L K P+ + L+ L V
Sbjct: 370 QLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVL 429
Query: 958 SVAYNNLSGKIPERAAQFATFNESSYEGNPFLCG 991
++++ L A + +GN F G
Sbjct: 430 NLSHCLLDTSNQHLLAGLQDLRHLNLQGNSFQDG 463
Score = 30.8 bits (68), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 53/124 (42%), Gaps = 15/124 (12%)
Query: 174 PKRLSRLNNLKVFDLSGNLFNNXXXXXXXXXXXXXXXXXYDNRLEGSIDVKEFDSLSNLE 233
P + +N+LK L+ N F+ N + + + + L NL+
Sbjct: 293 PSGIEGMNSLKKLVLNANSFDQLCQINAASFPSLRDLYIKGNMRKLDLGTRCLEKLENLQ 352
Query: 234 ELDMSYNEIDNFEVPQACS----GLRKLSYLHLLR---VGIRDGSKLLQSMGSFPSLNTL 286
+LD+S+++I E C+ LR L YL+L +G+ D Q+ P L L
Sbjct: 353 KLDLSHSDI---EASDCCNLQLKNLRHLQYLNLSYNEPLGLED-----QAFKECPQLELL 404
Query: 287 DLSY 290
D+++
Sbjct: 405 DVAF 408
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 31.6 bits (70), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 44/95 (46%)
Query: 872 YTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIE 931
+T++G S + DLS +++ + + T ++ L L+ N + + F L ++
Sbjct: 267 FTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLL 326
Query: 932 SLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSG 966
L+LS N L L+ L V ++YN++
Sbjct: 327 KLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRA 361
Score = 30.8 bits (68), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 18/24 (75%)
Query: 219 GSIDVKEFDSLSNLEELDMSYNEI 242
GSID + F++L LE LD+SYN I
Sbjct: 336 GSIDSRMFENLDKLEVLDLSYNHI 359
Score = 30.0 bits (66), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 734 QVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEG 793
+++LS+N L G + F N L +LDLSYNH+ GL L L L N L+
Sbjct: 327 KLNLSQNFL-GSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLK- 384
Query: 794 EVP 796
VP
Sbjct: 385 SVP 387
Score = 29.6 bits (65), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 44/94 (46%), Gaps = 12/94 (12%)
Query: 226 FDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRD---GSKLLQSMGSFPS 282
F ++LE+L ++ NEI+ + A GL HLL++ + GS + +
Sbjct: 295 FSHFTDLEQLTLAQNEINKID-DNAFWGLT-----HLLKLNLSQNFLGSIDSRMFENLDK 348
Query: 283 LNTLDLSYNNFXXXXXXXXQGFPHFKSLKELYMD 316
L LDLSYN+ G P+ LKEL +D
Sbjct: 349 LEVLDLSYNHIRALGDQSFLGLPN---LKELALD 379
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 25/47 (53%)
Query: 655 LSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPL 701
L+ S L LFL+NN L + +G LT L + + +NHI PL
Sbjct: 283 LNNLSQLNSLFLNNNQLGNEDXEVIGGLTNLTTLFLSQNHITDIRPL 329
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 31.2 bits (69), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 49/107 (45%), Gaps = 4/107 (3%)
Query: 881 LLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKL 940
L LDLS N I +I I + L L+ N+L +P+ NL N+ LDLS+N+L
Sbjct: 225 LWHALDLS-NLQIFNISANIFKYDFLTRLYLNGNSLTE-LPAEIKNLSNLRVLDLSHNRL 282
Query: 941 SWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESSYEGNP 987
+ +P +L L F ++N+ +P EGNP
Sbjct: 283 T-SLPAELGSCFQLKYFYF-FDNMVTTLPWEFGNLCNLQFLGVEGNP 327
Score = 30.0 bits (66), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Query: 632 FNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMP 691
F L L L GN E+P + S+L+ L LS+N L+ +P LG+ L++
Sbjct: 244 FKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTS-LPAELGSCFQLKYFYFF 301
Query: 692 KNHIEGPIPLEFCQLRILQILDISDN 717
N + +P EF L LQ L + N
Sbjct: 302 DNMVTT-LPWEFGNLCNLQFLGVEGN 326
>pdb|2MYS|B Chain B, Myosin Subfragment-1, Alpha Carbon Coordinates Only For
The Two Light Chains
pdb|1I84|U Chain U, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment.
pdb|1I84|Z Chain Z, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment
Length = 166
Score = 31.2 bits (69), Expect = 3.1, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 21/43 (48%)
Query: 567 FNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMG 609
N+ LD I + G +NF FL + +L G PE + MG
Sbjct: 57 LNVKNEELDAMIKEASGPINFTVFLTMFGEKLKGADPEDVIMG 99
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 31.2 bits (69), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 42/89 (47%), Gaps = 6/89 (6%)
Query: 878 VPSLLSGLDLSCN---RLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLD 934
+PS + LDLS N RL P LT + +L LSHN+L F + N+ LD
Sbjct: 37 LPSYTALLDLSHNNLSRLRAEWTP--TRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLD 94
Query: 935 LSYNKLSWKIPYQLVELNTLAVFSVAYNN 963
LS N L + +L L V + YNN
Sbjct: 95 LSSNHLHTLDEFLFSDLQALEVL-LLYNN 122
>pdb|2W4A|B Chain B, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W4G|B Chain B, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Stretch Step
pdb|2W4H|B Chain B, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Release Step
Length = 150
Score = 31.2 bits (69), Expect = 3.1, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 21/43 (48%)
Query: 567 FNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMG 609
N+ LD I + G +NF FL + +L G PE + MG
Sbjct: 44 LNVKNEELDAMIKEASGPINFTVFLTMFGEKLKGADPEDVIMG 86
>pdb|1M8Q|B Chain B, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|E Chain E, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|H Chain H, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|Q Chain Q, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|B Chain B, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|E Chain E, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|H Chain H, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|K Chain K, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|N Chain N, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|Q Chain Q, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|E Chain E, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|H Chain H, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|K Chain K, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|N Chain N, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|Q Chain Q, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|B Chain B, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|E Chain E, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|H Chain H, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|K Chain K, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|N Chain N, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|T Chain T, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|B Chain B, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|E Chain E, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|H Chain H, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|K Chain K, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|N Chain N, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|Q Chain Q, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|B Chain B, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|E Chain E, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|H Chain H, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|K Chain K, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|B Chain B, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|E Chain E, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|H Chain H, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|K Chain K, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|Q Chain Q, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|B Chain B, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|E Chain E, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|H Chain H, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|K Chain K, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|N Chain N, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|Q Chain Q, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|B Chain B, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|E Chain E, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|H Chain H, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|K Chain K, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|N Chain N, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|Q Chain Q, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|B Chain B, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|E Chain E, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|H Chain H, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|K Chain K, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|B Chain B, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|E Chain E, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|H Chain H, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|K Chain K, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|N Chain N, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|Q Chain Q, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
Length = 145
Score = 31.2 bits (69), Expect = 3.1, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 21/43 (48%)
Query: 567 FNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMG 609
N+ LD I + G +NF FL + +L G PE + MG
Sbjct: 39 LNVKNEELDAMIKEASGPINFTVFLTMFGEKLKGADPEDVIMG 81
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 31.2 bits (69), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 65/165 (39%), Gaps = 26/165 (15%)
Query: 626 HMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVL 685
H S LTNL +L L GN K ++L+ L L N L LT L
Sbjct: 76 HDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNL 135
Query: 686 RHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQ 745
++ + N ++ F +L L LD+ DNN SLP
Sbjct: 136 TYLYLYHNQLQSLPKGVFDKLTNLTRLDL-DNNQLQSLP--------------------- 173
Query: 746 LKEGTFFNCLTLMILDLSYNHLNGNIPDRV-DGLSQLSYLILAHN 789
EG F L L L+ N L +PD V D L+ L+++ L +N
Sbjct: 174 --EGVFDKLTQLKQLSLNDNQLKS-VPDGVFDRLTSLTHIWLLNN 215
>pdb|3LUA|A Chain A, Crystal Structure Of A Signal Receiver Domain Of Two
Component Signal Transduction (Histidine Kinase) From
Clostridium Thermocellum
Length = 140
Score = 31.2 bits (69), Expect = 3.3, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
Query: 87 GEYWYLNAS----LFTPFQQLESLDLRDNDIAGCVENEGLERLSRLSN 130
GEY ++ ++ F+ L+S+ L DIA VE EGLE LS + N
Sbjct: 28 GEYDFIEVENLKKFYSIFKDLDSITLIIXDIAFPVEKEGLEVLSAIRN 75
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 31.2 bits (69), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 79/171 (46%), Gaps = 26/171 (15%)
Query: 243 DNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSF---PSLNTLDLSYNNFXXXXXX 299
+N ++ QA R L +L +L++G R+ + ++ +G+F SLNTL+L ++N+
Sbjct: 85 NNIQMIQA-DTFRHLHHLEVLQLG-RNSIRQIE-VGAFNGLASLNTLEL-FDNWLTVIPS 140
Query: 300 XXQGFPHFKSLKELYMDDARI------ALNT--SFLQIIGESMPSIQYXXXXXXXXXXXX 351
F + L+EL++ + I A N S +++ + ++Y
Sbjct: 141 --GAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNL 198
Query: 352 RTLDQGLC---------PLVHLQELHMADNDLRGSLPWCLANMTSLRILDV 393
+ L+ G+C PLV L+EL M+ N P ++SL+ L V
Sbjct: 199 KYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWV 249
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 30.8 bits (68), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 5/92 (5%)
Query: 873 TYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIES 932
T+ G S + LDLS + L ++ LNL++N + F L N++
Sbjct: 259 TFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQV 318
Query: 933 LDLSYNKLSWKIPYQLVELNTLAVFSVAYNNL 964
L+LSYN L +L N + VAY +L
Sbjct: 319 LNLSYNLLG-----ELYSSNFYGLPKVAYIDL 345
Score = 30.4 bits (67), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 72/284 (25%), Positives = 113/284 (39%), Gaps = 72/284 (25%)
Query: 535 SHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLS 594
+ +R LD+S + F + + + L L V N++ N ++ +F ++ LQ L+LS
Sbjct: 264 ARSSVRHLDLS-HGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLS 322
Query: 595 NNQLTGEIPEHLAMGCVXXXXXXXXXXXXEGHMFSRNF-NLTNLIWLQLEGNHFVGEIPQ 653
N L G ++S NF L + ++ L+ NH Q
Sbjct: 323 YNLL--------------------------GELYSSNFYGLPKVAYIDLQKNHIAIIQDQ 356
Query: 654 SLSKCSSLQGLFLSNNSL--------------SGKIPRWLGNLTVLRHII-MPKNHIEGP 698
+ LQ L L +N+L SG L + + ++I + +N +E
Sbjct: 357 TFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENL 416
Query: 699 IPLEFCQLRI--LQILDISDNNISG----SLPSCYDFVCIEQVHLSKNMLHGQLKEGTFF 752
L F LR+ LQIL ++ N S PS + +EQ+ L +NML QL T
Sbjct: 417 DILYFL-LRVPHLQILILNQNRFSSCSGDQTPS--ENPSLEQLFLGENML--QLAWET-- 469
Query: 753 NCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVP 796
+L + D +GLS L L L HN L P
Sbjct: 470 --------ELCW--------DVFEGLSHLQVLYLNHNYLNSLPP 497
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 30.8 bits (68), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 5/64 (7%)
Query: 903 LTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPY----QLVELNTLAVFS 958
LTK++ L L+ N L F L N+++L LS N+L +P+ +L +L T+ +F
Sbjct: 130 LTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTITLFG 188
Query: 959 VAYN 962
++
Sbjct: 189 NQFD 192
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 30.4 bits (67), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 5/64 (7%)
Query: 903 LTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPY----QLVELNTLAVFS 958
LTK++ L L+ N L F L N+++L LS N+L +P+ +L +L T+ +F
Sbjct: 130 LTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTITLFG 188
Query: 959 VAYN 962
++
Sbjct: 189 NQFD 192
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 30.4 bits (67), Expect = 6.1, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Query: 543 DVSKNNFQGHIPLEIGDILSRLTVFNISM-NALDGSIPSSFGNMNFLQFLDLSNNQLTGE 601
DV+ N+ +GH PL + + L + + + N D + FG F +D N L E
Sbjct: 105 DVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDL-AE 163
Query: 602 IPEHL 606
I + L
Sbjct: 164 ILQKL 168
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 30.0 bits (66), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 899 QIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWK---IPYQLVELNTLA 955
Q+ NL+ +Q+LNLS+N F +E LDL++ +L K P+Q L+ L
Sbjct: 371 QLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQ--NLHLLK 428
Query: 956 VFSVAYN 962
V +++++
Sbjct: 429 VLNLSHS 435
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.139 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,239,134
Number of Sequences: 62578
Number of extensions: 1134641
Number of successful extensions: 2866
Number of sequences better than 100.0: 80
Number of HSP's better than 100.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 1969
Number of HSP's gapped (non-prelim): 660
length of query: 1077
length of database: 14,973,337
effective HSP length: 109
effective length of query: 968
effective length of database: 8,152,335
effective search space: 7891460280
effective search space used: 7891460280
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)