Query 001439
Match_columns 1077
No_of_seqs 906 out of 5385
Neff 10.0
Searched_HMMs 46136
Date Fri Mar 29 00:51:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001439.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001439hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 1.5E-68 3.3E-73 683.9 49.2 584 28-993 27-611 (968)
2 PLN00113 leucine-rich repeat r 100.0 2E-56 4.4E-61 572.2 39.1 519 362-993 69-588 (968)
3 KOG4194 Membrane glycoprotein 100.0 9.7E-39 2.1E-43 339.5 8.0 374 564-994 80-457 (873)
4 KOG4194 Membrane glycoprotein 100.0 8.4E-37 1.8E-41 324.9 3.3 373 537-967 78-454 (873)
5 KOG0472 Leucine-rich repeat pr 100.0 4E-38 8.6E-43 320.9 -13.0 497 335-987 45-562 (565)
6 KOG0472 Leucine-rich repeat pr 100.0 3.2E-37 6.9E-42 314.3 -14.6 475 362-989 45-541 (565)
7 KOG0444 Cytoskeletal regulator 100.0 1.4E-32 3.1E-37 294.0 -3.6 369 536-993 6-379 (1255)
8 KOG0444 Cytoskeletal regulator 100.0 2.9E-32 6.2E-37 291.7 -5.0 366 511-941 5-375 (1255)
9 KOG0618 Serine/threonine phosp 100.0 7E-32 1.5E-36 303.6 -3.4 203 534-742 261-464 (1081)
10 KOG0618 Serine/threonine phosp 100.0 4.7E-32 1E-36 305.0 -5.3 350 539-962 158-510 (1081)
11 KOG4237 Extracellular matrix p 99.9 1.3E-26 2.8E-31 237.2 -3.1 147 523-671 53-200 (498)
12 KOG4237 Extracellular matrix p 99.9 1.3E-25 2.8E-30 229.9 -3.5 283 541-828 50-347 (498)
13 PLN03210 Resistant to P. syrin 99.9 4.7E-22 1E-26 254.2 26.7 308 563-939 590-904 (1153)
14 PLN03210 Resistant to P. syrin 99.9 1.2E-21 2.6E-26 250.5 26.4 341 553-963 549-904 (1153)
15 PRK15387 E3 ubiquitin-protein 99.9 4E-21 8.6E-26 226.2 16.6 74 563-648 202-275 (788)
16 PRK15387 E3 ubiquitin-protein 99.8 2.3E-20 5.1E-25 219.8 17.4 134 538-696 202-335 (788)
17 PRK15370 E3 ubiquitin-protein 99.8 1.2E-18 2.6E-23 207.2 12.1 119 562-696 178-296 (754)
18 PRK15370 E3 ubiquitin-protein 99.8 1.4E-18 3E-23 206.7 12.4 222 539-816 180-401 (754)
19 cd00116 LRR_RI Leucine-rich re 99.7 2.5E-18 5.5E-23 191.8 -2.7 67 751-817 161-235 (319)
20 cd00116 LRR_RI Leucine-rich re 99.7 3.8E-18 8.2E-23 190.4 -3.9 108 881-988 194-319 (319)
21 KOG0617 Ras suppressor protein 99.6 7.2E-18 1.6E-22 153.1 -3.8 87 882-970 104-191 (264)
22 KOG0617 Ras suppressor protein 99.6 6.4E-18 1.4E-22 153.4 -4.6 187 724-970 27-217 (264)
23 PLN03150 hypothetical protein; 99.6 3.9E-15 8.4E-20 177.5 10.3 119 881-999 419-538 (623)
24 PLN03150 hypothetical protein; 99.4 1.2E-12 2.5E-17 156.5 13.6 156 24-216 366-526 (623)
25 KOG1909 Ran GTPase-activating 99.3 1.7E-12 3.6E-17 133.0 3.9 97 98-194 27-133 (382)
26 KOG0532 Leucine-rich repeat (L 99.2 7E-13 1.5E-17 143.5 -2.5 170 735-967 80-249 (722)
27 KOG0532 Leucine-rich repeat (L 99.2 4.1E-13 8.8E-18 145.2 -5.9 175 753-989 73-247 (722)
28 COG4886 Leucine-rich repeat (L 99.1 7.9E-11 1.7E-15 135.1 8.1 155 756-970 141-295 (394)
29 KOG3207 Beta-tubulin folding c 99.1 7.6E-11 1.6E-15 124.2 3.8 190 98-294 118-314 (505)
30 PF14580 LRR_9: Leucine-rich r 99.1 1.8E-10 3.8E-15 111.8 6.0 112 125-244 15-127 (175)
31 COG4886 Leucine-rich repeat (L 99.0 3.9E-10 8.4E-15 129.4 7.8 83 635-720 116-199 (394)
32 KOG1909 Ran GTPase-activating 99.0 3.9E-10 8.4E-15 115.9 5.6 170 73-243 29-226 (382)
33 KOG3207 Beta-tubulin folding c 98.9 3.4E-10 7.3E-15 119.4 3.2 218 200-451 116-341 (505)
34 KOG1259 Nischarin, modulator o 98.9 2.3E-10 5E-15 114.2 1.0 61 753-816 282-342 (490)
35 KOG4658 Apoptotic ATPase [Sign 98.9 7.4E-10 1.6E-14 134.8 5.4 130 99-237 543-675 (889)
36 PF14580 LRR_9: Leucine-rich r 98.9 2.1E-09 4.6E-14 104.4 7.4 89 149-246 15-104 (175)
37 KOG2120 SCF ubiquitin ligase, 98.9 4.8E-10 1E-14 112.1 0.3 230 130-397 137-374 (419)
38 KOG1259 Nischarin, modulator o 98.8 1.6E-09 3.4E-14 108.3 1.2 132 127-269 282-413 (490)
39 PF08263 LRRNT_2: Leucine rich 98.8 5.3E-09 1.1E-13 75.7 3.6 41 29-70 2-43 (43)
40 PF13855 LRR_8: Leucine rich r 98.7 8.8E-09 1.9E-13 82.0 2.9 59 905-963 2-60 (61)
41 KOG4658 Apoptotic ATPase [Sign 98.7 1.7E-08 3.6E-13 123.2 6.1 131 99-241 521-653 (889)
42 PF13855 LRR_8: Leucine rich r 98.7 7.8E-09 1.7E-13 82.3 2.1 60 881-940 2-61 (61)
43 KOG0531 Protein phosphatase 1, 98.6 4.6E-09 1E-13 120.4 -0.9 85 882-969 234-322 (414)
44 COG5238 RNA1 Ran GTPase-activa 98.6 3.5E-08 7.6E-13 97.7 5.2 94 100-193 29-132 (388)
45 KOG2120 SCF ubiquitin ligase, 98.6 6.4E-09 1.4E-13 104.2 0.0 188 231-422 186-374 (419)
46 KOG0531 Protein phosphatase 1, 98.6 6.2E-09 1.3E-13 119.3 -0.6 132 99-246 70-202 (414)
47 KOG2982 Uncharacterized conser 98.4 1.2E-07 2.7E-12 95.1 3.4 67 334-402 198-265 (418)
48 KOG1859 Leucine-rich repeat pr 98.4 1.3E-08 2.9E-13 113.7 -4.0 162 97-269 105-293 (1096)
49 KOG4341 F-box protein containi 98.4 4.1E-08 9E-13 103.4 -1.6 286 102-397 139-437 (483)
50 KOG4341 F-box protein containi 98.4 8.5E-08 1.8E-12 101.2 0.6 290 129-424 138-439 (483)
51 KOG1859 Leucine-rich repeat pr 98.1 1.9E-07 4.1E-12 104.8 -4.1 129 101-243 164-292 (1096)
52 KOG4579 Leucine-rich repeat (L 98.1 1.4E-07 3E-12 83.8 -4.1 57 883-941 80-136 (177)
53 KOG2982 Uncharacterized conser 98.1 1.8E-06 3.8E-11 87.1 2.4 65 385-449 198-262 (418)
54 COG5238 RNA1 Ran GTPase-activa 98.1 1.1E-06 2.3E-11 87.4 0.7 238 123-401 24-287 (388)
55 PRK15386 type III secretion pr 97.8 4.7E-05 1E-09 83.4 8.0 54 754-813 51-104 (426)
56 KOG3665 ZYG-1-like serine/thre 97.7 2.3E-05 5.1E-10 93.6 4.9 107 129-240 122-230 (699)
57 KOG3665 ZYG-1-like serine/thre 97.7 2.6E-05 5.5E-10 93.3 5.0 154 101-262 122-282 (699)
58 PF12799 LRR_4: Leucine Rich r 97.7 2.3E-05 4.9E-10 56.8 2.4 36 905-941 2-37 (44)
59 KOG4579 Leucine-rich repeat (L 97.6 3.9E-06 8.5E-11 74.8 -2.7 85 537-625 53-137 (177)
60 KOG1644 U2-associated snRNP A' 97.6 8.6E-05 1.9E-09 71.3 4.9 87 152-244 41-127 (233)
61 PF12799 LRR_4: Leucine Rich r 97.5 5.6E-05 1.2E-09 54.8 2.4 38 928-966 1-38 (44)
62 PRK15386 type III secretion pr 97.4 0.0005 1.1E-08 75.5 9.5 32 659-693 156-187 (426)
63 PF13306 LRR_5: Leucine rich r 97.4 0.00032 6.8E-09 66.0 7.1 87 554-644 4-90 (129)
64 PF13306 LRR_5: Leucine rich r 97.4 0.00037 7.9E-09 65.6 6.6 124 579-709 5-128 (129)
65 KOG1644 U2-associated snRNP A' 97.3 0.00045 9.9E-09 66.5 5.5 109 334-447 41-151 (233)
66 KOG1947 Leucine rich repeat pr 97.2 0.00028 6.1E-09 83.8 4.1 181 152-347 187-374 (482)
67 KOG2739 Leucine-rich acidic nu 96.8 0.00065 1.4E-08 68.6 2.4 66 178-243 62-129 (260)
68 KOG2739 Leucine-rich acidic nu 96.8 0.00092 2E-08 67.5 3.0 59 180-238 90-151 (260)
69 KOG1947 Leucine rich repeat pr 96.7 0.00039 8.4E-09 82.6 -0.1 117 178-294 185-308 (482)
70 KOG2123 Uncharacterized conser 96.4 0.00035 7.7E-09 70.3 -2.6 82 152-241 18-99 (388)
71 KOG2123 Uncharacterized conser 96.3 0.00061 1.3E-08 68.6 -1.6 103 180-287 18-123 (388)
72 KOG4308 LRR-containing protein 95.9 0.00042 9.2E-09 79.4 -5.4 143 103-245 89-248 (478)
73 PF00560 LRR_1: Leucine Rich R 95.3 0.0065 1.4E-07 36.4 0.6 19 930-949 2-20 (22)
74 PF00560 LRR_1: Leucine Rich R 95.1 0.0062 1.3E-07 36.5 0.1 20 906-926 2-21 (22)
75 KOG4308 LRR-containing protein 94.3 0.0033 7.1E-08 72.2 -4.5 194 76-269 89-304 (478)
76 KOG3864 Uncharacterized conser 92.7 0.039 8.5E-07 53.7 0.6 81 131-214 103-185 (221)
77 KOG0473 Leucine-rich repeat pr 91.2 0.0088 1.9E-07 58.9 -5.7 82 881-965 43-124 (326)
78 KOG3864 Uncharacterized conser 90.3 0.1 2.2E-06 51.0 0.6 82 181-263 101-184 (221)
79 PF13504 LRR_7: Leucine rich r 90.2 0.16 3.5E-06 28.2 1.0 13 929-941 2-14 (17)
80 KOG4242 Predicted myosin-I-bin 88.8 1.6 3.5E-05 48.3 8.2 60 363-422 414-479 (553)
81 PF13504 LRR_7: Leucine rich r 88.6 0.34 7.5E-06 26.8 1.6 13 587-599 2-14 (17)
82 smart00369 LRR_TYP Leucine-ric 87.0 0.61 1.3E-05 29.2 2.3 22 585-607 1-22 (26)
83 smart00370 LRR Leucine-rich re 87.0 0.61 1.3E-05 29.2 2.3 22 585-607 1-22 (26)
84 PF13516 LRR_6: Leucine Rich r 86.7 0.32 6.9E-06 29.8 0.9 21 181-201 2-22 (24)
85 KOG0473 Leucine-rich repeat pr 86.2 0.029 6.3E-07 55.5 -6.0 86 98-194 39-124 (326)
86 smart00369 LRR_TYP Leucine-ric 85.7 0.59 1.3E-05 29.3 1.8 13 929-941 3-15 (26)
87 smart00370 LRR Leucine-rich re 85.7 0.59 1.3E-05 29.3 1.8 13 929-941 3-15 (26)
88 PF13516 LRR_6: Leucine Rich r 85.3 0.45 9.7E-06 29.1 1.1 21 129-149 2-22 (24)
89 KOG4242 Predicted myosin-I-bin 73.3 15 0.00033 41.1 8.4 63 336-398 414-480 (553)
90 smart00365 LRR_SD22 Leucine-ri 73.1 2.8 6.1E-05 26.3 1.8 15 927-941 1-15 (26)
91 smart00368 LRR_RI Leucine rich 64.8 6.3 0.00014 25.2 2.2 20 181-200 2-21 (28)
92 smart00368 LRR_RI Leucine rich 63.6 7.5 0.00016 24.9 2.3 14 130-143 3-16 (28)
93 smart00364 LRR_BAC Leucine-ric 62.8 5.4 0.00012 24.9 1.5 13 881-893 3-15 (26)
94 TIGR00864 PCC polycystin catio 53.9 6 0.00013 54.1 1.3 36 934-969 1-36 (2740)
95 smart00367 LRR_CC Leucine-rich 50.5 16 0.00034 22.8 2.2 11 181-191 2-12 (26)
96 PF15102 TMEM154: TMEM154 prot 48.8 11 0.00024 35.0 1.7 23 1028-1050 66-88 (146)
97 KOG3763 mRNA export factor TAP 41.5 16 0.00035 41.8 2.1 64 256-320 219-282 (585)
98 PF07172 GRP: Glycine rich pro 40.7 14 0.0003 32.0 1.1 15 1-16 1-15 (95)
99 PRK00523 hypothetical protein; 39.0 56 0.0012 26.3 4.0 30 1024-1053 6-35 (72)
100 PF01102 Glycophorin_A: Glycop 36.8 39 0.00084 30.7 3.3 7 1037-1043 80-86 (122)
101 KOG3763 mRNA export factor TAP 35.8 29 0.00063 39.9 2.9 12 334-345 243-254 (585)
102 PRK01844 hypothetical protein; 34.0 75 0.0016 25.6 4.0 25 1029-1053 10-34 (72)
103 PF15050 SCIMP: SCIMP protein 33.0 59 0.0013 28.8 3.6 25 1026-1050 12-36 (133)
104 PF02439 Adeno_E3_CR2: Adenovi 30.2 72 0.0016 22.1 2.9 11 1025-1035 11-21 (38)
105 PF07204 Orthoreo_P10: Orthore 28.8 39 0.00085 28.5 1.8 30 1019-1048 40-69 (98)
106 TIGR00864 PCC polycystin catio 26.4 37 0.0008 47.1 2.0 33 910-942 1-33 (2740)
107 PF13260 DUF4051: Protein of u 22.4 51 0.0011 23.7 1.2 15 28-42 29-43 (54)
108 PF15176 LRR19-TM: Leucine-ric 21.4 1.4E+02 0.0031 25.8 3.8 8 1046-1053 39-46 (102)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.5e-68 Score=683.89 Aligned_cols=584 Identities=36% Similarity=0.526 Sum_probs=417.2
Q ss_pred cHHHHHHHHhchhhccCCCCcccCCCCCCCCCCCccccceEecCCCCceEEEEcCCcccCccccccccccccCcCCcEee
Q 001439 28 LNHERFALLQLKLFFIDPYNYLLDWVDDEGATDCCQWERVSCNNTMGRVVVLDLSQTHRGEYWYLNASLFTPFQQLESLD 107 (1077)
Q Consensus 28 ~~~~~~all~~k~~~~~~~~~l~~w~~~~~~~~~c~w~gv~c~~~~~~v~~l~L~~~~~~~~~~~~~~~~~~l~~L~~L~ 107 (1077)
+++|++||++||+++.+|.+.+.+|.. + ++||.|.||+|++ .++|+.+||+++.+.+
T Consensus 27 ~~~~~~~l~~~~~~~~~~~~~~~~w~~-~--~~~c~w~gv~c~~-~~~v~~L~L~~~~i~~------------------- 83 (968)
T PLN00113 27 HAEELELLLSFKSSINDPLKYLSNWNS-S--ADVCLWQGITCNN-SSRVVSIDLSGKNISG------------------- 83 (968)
T ss_pred CHHHHHHHHHHHHhCCCCcccCCCCCC-C--CCCCcCcceecCC-CCcEEEEEecCCCccc-------------------
Confidence 578999999999999888888999964 3 7899999999986 5789999998764332
Q ss_pred CCCCCCCccccchhhhhccCCCCCcEEeCCCCCCCchhhHHhh-ccCCCCEEeCCCCcCCCccCCcchhhccCCCCCcEE
Q 001439 108 LRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLA-RLSSLTSLDLSANRLKGSIDIKGPKRLSRLNNLKVF 186 (1077)
Q Consensus 108 Ls~n~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~-~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L 186 (1077)
..+ ..+..+++|++|+|++|.+++.+|..+. ++++|++|+|++|.+.+.+|. +.+++|++|
T Consensus 84 --------~~~----~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~------~~l~~L~~L 145 (968)
T PLN00113 84 --------KIS----SAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR------GSIPNLETL 145 (968)
T ss_pred --------cCC----hHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc------cccCCCCEE
Confidence 221 1256667777777777777666666554 677777777777777766552 446677777
Q ss_pred ECCCCCCCchhhHhhhccCCCcEEEcCCCCCCCCcChhhhhcccccceeecCCCcCCCCchhhhccCCcccceeeecccc
Q 001439 187 DLSGNLFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVG 266 (1077)
Q Consensus 187 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~l~~~~ 266 (1077)
++++|.+.+..|..++++++|++|++++|.+.+.++ .
T Consensus 146 ~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p-~------------------------------------------ 182 (968)
T PLN00113 146 DLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIP-N------------------------------------------ 182 (968)
T ss_pred ECcCCcccccCChHHhcCCCCCEEECccCcccccCC-h------------------------------------------
Confidence 777777666666666666666666555555432221 1
Q ss_pred cCCcchhhhhcCCCCCcceeccccCcccccccccccCCccCccccEEecchhHhhhhhhhHHHHhccCCCCcEEecccCc
Q 001439 267 IRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSS 346 (1077)
Q Consensus 267 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~l~~~l~~L~~L~L~~~~ 346 (1077)
T Consensus 183 -------------------------------------------------------------------------------- 182 (968)
T PLN00113 183 -------------------------------------------------------------------------------- 182 (968)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcccccccccCCCCccEEEccCCcCCCCchhhhcCCCCCcEEecCCCccccccCCccccCCCCcceeecCCCeeeee
Q 001439 347 VSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIP 426 (1077)
Q Consensus 347 ~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~ 426 (1077)
.++.+++|++|++++|.+++.+|..++++++|++|++++|.+.+.+ +..+.+
T Consensus 183 ----------~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~-p~~l~~----------------- 234 (968)
T PLN00113 183 ----------SLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEI-PYEIGG----------------- 234 (968)
T ss_pred ----------hhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcC-ChhHhc-----------------
Confidence 2222334444444444444444555555555555555555443322 111111
Q ss_pred cCcccccCCCCccEEecCCCcceeeeeccccCCCCccceeEEeeccCCCCCCccchhccCCCcccEEEeccCCCCCCCch
Q 001439 427 ISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPN 506 (1077)
Q Consensus 427 ~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~p~~l~~~~~L~~L~l~~~~~~~~~p~ 506 (1077)
T Consensus 235 -------------------------------------------------------------------------------- 234 (968)
T PLN00113 235 -------------------------------------------------------------------------------- 234 (968)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhcCCCccEEEccCCCCcCCCccCcCCCCCccEEEcCCCcccccCCchhhccCCCCcEEEcccCcccccCCccCCCCC
Q 001439 507 WLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMN 586 (1077)
Q Consensus 507 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~ 586 (1077)
+++|++|++++|.+++.+|..+.. +++|++|++++|.+.+.+|..+.+++
T Consensus 235 -----------------------------l~~L~~L~L~~n~l~~~~p~~l~~-l~~L~~L~L~~n~l~~~~p~~l~~l~ 284 (968)
T PLN00113 235 -----------------------------LTSLNHLDLVYNNLTGPIPSSLGN-LKNLQYLFLYQNKLSGPIPPSIFSLQ 284 (968)
T ss_pred -----------------------------CCCCCEEECcCceeccccChhHhC-CCCCCEEECcCCeeeccCchhHhhcc
Confidence 122333333333333344444443 67778888888888777777777778
Q ss_pred CCCEEEccCCcCCCCcchHhhhcCCcCcEEEcccccCCCcccccccCCCccCeeeccCccccccCCccccCCCCCcEEEc
Q 001439 587 FLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFL 666 (1077)
Q Consensus 587 ~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 666 (1077)
+|++|++++|.+.+.+|..+ ..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++
T Consensus 285 ~L~~L~Ls~n~l~~~~p~~~-~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L 363 (968)
T PLN00113 285 KLISLDLSDNSLSGEIPELV-IQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDL 363 (968)
T ss_pred CcCEEECcCCeeccCCChhH-cCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEEC
Confidence 88888888887776666554 35666666666666666555555555555555555555555555555555555555555
Q ss_pred ccCcCCCCCCccccCCCCccEEECCCCcccCCCCccccCCCCCCEEeccCCcCCcCCCCCCCCccccEEEccCCcccccc
Q 001439 667 SNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQL 746 (1077)
Q Consensus 667 ~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~i 746 (1077)
++|++.+.+|.++..+++|+.|++++|.+.+.+|..+..+++|+.|++++| .+.+.+
T Consensus 364 s~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n-----------------------~l~~~~ 420 (968)
T PLN00113 364 STNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDN-----------------------SFSGEL 420 (968)
T ss_pred CCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCC-----------------------EeeeEC
Confidence 555555555555555555555555555555555555555555555555555 444555
Q ss_pred CcccccccccccEeccccccCCCCCCccccCCCCCCEEEccCccccccCchhccCCCCCCEEECcCCcCCCCCCcccccC
Q 001439 747 KEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNT 826 (1077)
Q Consensus 747 ~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~ 826 (1077)
|. .|.++++|+.|++++|.+++.+|..+..+++|+.|++++|++.+.+|..+ ..++|+.||+++|++++.+|..+.++
T Consensus 421 p~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l 498 (968)
T PLN00113 421 PS-EFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSL 498 (968)
T ss_pred Ch-hHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhh
Confidence 55 78888899999999999999999988899999999999999998888766 46899999999999999999877665
Q ss_pred cccccccCCCCCCCcccceeecCCCcCCcccccccceeeccccceeecccCcCCCCceEECCCCcCCCCCcccccccccC
Q 001439 827 TLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKI 906 (1077)
Q Consensus 827 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L 906 (1077)
. .|+.|+|++|++++.+|..++++++|
T Consensus 499 ~-----------------------------------------------------~L~~L~Ls~N~l~~~~p~~~~~l~~L 525 (968)
T PLN00113 499 S-----------------------------------------------------ELMQLKLSENKLSGEIPDELSSCKKL 525 (968)
T ss_pred h-----------------------------------------------------ccCEEECcCCcceeeCChHHcCccCC
Confidence 4 68899999999999999999999999
Q ss_pred ceeeCcCCcCCCCCCccccCCCCCCeEeCCCCcCcccCCCcccCCCCcceEEcccccccccCCccccccCCCCcccccCC
Q 001439 907 QTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESSYEGN 986 (1077)
Q Consensus 907 ~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~l~ls~N~l~g~~p~~~~~~~~~~~~~~~gN 986 (1077)
++|+|++|.++|.+|..|+.+++|+.|||++|+++|.+|..+..+++|+++++++|+++|.+|. .++|.++...++.||
T Consensus 526 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~-~~~~~~~~~~~~~~n 604 (968)
T PLN00113 526 VSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPS-TGAFLAINASAVAGN 604 (968)
T ss_pred CEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCC-cchhcccChhhhcCC
Confidence 9999999999999999999999999999999999999999999999999999999999999998 788999999999999
Q ss_pred CCCCCCC
Q 001439 987 PFLCGPP 993 (1077)
Q Consensus 987 ~~lC~~~ 993 (1077)
|.+||.+
T Consensus 605 ~~lc~~~ 611 (968)
T PLN00113 605 IDLCGGD 611 (968)
T ss_pred ccccCCc
Confidence 9999864
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=2e-56 Score=572.19 Aligned_cols=519 Identities=30% Similarity=0.487 Sum_probs=424.8
Q ss_pred CCccEEEccCCcCCCCchhhhcCCCCCcEEecCCCccccccCCccccCCCCcceeecCCCeeeeecCcccccCCCCccEE
Q 001439 362 VHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIF 441 (1077)
Q Consensus 362 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l 441 (1077)
.+++.|++++|.+++.++..+..+++|+.|++++|.+.+.++...+..+++|++|++++|.+++.++. ..++
T Consensus 69 ~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~---~~l~----- 140 (968)
T PLN00113 69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR---GSIP----- 140 (968)
T ss_pred CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc---cccC-----
Confidence 46777888888887777777888888888888888877777555555777788888877777654442 1223
Q ss_pred ecCCCcceeeeeccccCCCCccceeEEeeccCCCCCCccchhccCCCcccEEEeccCCCCCCCchhhhhcCCCccEEEcc
Q 001439 442 DAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLV 521 (1077)
Q Consensus 442 ~l~~n~l~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~p~~l~~~~~L~~L~l~~~~~~~~~p~~~~~~~~~L~~L~l~ 521 (1077)
+|++|++++|.+.+.+|.. ++++++|++|+++
T Consensus 141 -----------------------------------------------~L~~L~Ls~n~~~~~~p~~-~~~l~~L~~L~L~ 172 (968)
T PLN00113 141 -----------------------------------------------NLETLDLSNNMLSGEIPND-IGSFSSLKVLDLG 172 (968)
T ss_pred -----------------------------------------------CCCEEECcCCcccccCChH-HhcCCCCCEEECc
Confidence 4445555555555555544 4566666666666
Q ss_pred CCCCcCCCccCcCCCCCccEEEcCCCcccccCCchhhccCCCCcEEEcccCcccccCCccCCCCCCCCEEEccCCcCCCC
Q 001439 522 NDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGE 601 (1077)
Q Consensus 522 ~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~ 601 (1077)
+|.+.+..+..+..+++|++|++++|.+++.+|..+.. +++|++|++++|.+.+.+|..++++++|++|++++|.+++.
T Consensus 173 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~-l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ 251 (968)
T PLN00113 173 GNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQ-MKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGP 251 (968)
T ss_pred cCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcC-cCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccc
Confidence 66666666666667777777777777777777776655 77778888887777777777777778888888888877766
Q ss_pred cchHhhhcCCcCcEEEcccccCCCcccccccCCCccCeeeccCccccccCCccccCCCCCcEEEcccCcCCCCCCccccC
Q 001439 602 IPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGN 681 (1077)
Q Consensus 602 ip~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~ 681 (1077)
+|..+ ..+++|++|++++|.+.+..|..+.++++|++|++++|.+.+.+|..+..+++|+.|++++|.+.+..|.++..
T Consensus 252 ~p~~l-~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 330 (968)
T PLN00113 252 IPSSL-GNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTS 330 (968)
T ss_pred cChhH-hCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhc
Confidence 77654 46777888888888877777777777888888888888888778887888888888888888888888888888
Q ss_pred CCCccEEECCCCcccCCCCccccCCCCCCEEeccCCcCCcCCCCCC-CCccccEEEccCCccccccCcccccccccccEe
Q 001439 682 LTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCY-DFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMIL 760 (1077)
Q Consensus 682 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~-~~~~L~~L~l~~n~~~~~i~~~~~~~~~~L~~L 760 (1077)
+++|+.|++++|.+.+.+|..+..+++|+.|++++|++++.+|..+ ..++|+.+++++|.+.+.+|. .+..+++|+.|
T Consensus 331 l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~-~~~~~~~L~~L 409 (968)
T PLN00113 331 LPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPK-SLGACRSLRRV 409 (968)
T ss_pred CCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCH-HHhCCCCCCEE
Confidence 8888888888888888888888888888888888888888777766 667888888888888888887 89999999999
Q ss_pred ccccccCCCCCCccccCCCCCCEEEccCccccccCchhccCCCCCCEEECcCCcCCCCCCcccccCcccccccCCCCCCC
Q 001439 761 DLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQP 840 (1077)
Q Consensus 761 ~l~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~ 840 (1077)
++++|++++.+|..+..+++|+.|++++|.+++.+|..+..+++|+.|++++|++.+.+|..+..
T Consensus 410 ~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~--------------- 474 (968)
T PLN00113 410 RLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGS--------------- 474 (968)
T ss_pred ECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccccc---------------
Confidence 99999999999999999999999999999999999999999999999999999999888875421
Q ss_pred cccceeecCCCcCCcccccccceeeccccceeecccCcCCCCceEECCCCcCCCCCcccccccccCceeeCcCCcCCCCC
Q 001439 841 FETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPI 920 (1077)
Q Consensus 841 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 920 (1077)
..|+.||+++|++++.+|..+.++++|+.|+|++|++++.+
T Consensus 475 ---------------------------------------~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 515 (968)
T PLN00113 475 ---------------------------------------KRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEI 515 (968)
T ss_pred ---------------------------------------ccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeC
Confidence 16889999999999999999999999999999999999999
Q ss_pred CccccCCCCCCeEeCCCCcCcccCCCcccCCCCcceEEcccccccccCCccccccCCCCcccccCCCCCCCCC
Q 001439 921 PSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESSYEGNPFLCGPP 993 (1077)
Q Consensus 921 p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~l~ls~N~l~g~~p~~~~~~~~~~~~~~~gN~~lC~~~ 993 (1077)
|..++++++|++|+|++|+++|.+|..+..+++|+.|++++|+++|.+|..+..+..+..+++.+|+..+..|
T Consensus 516 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p 588 (968)
T PLN00113 516 PDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLP 588 (968)
T ss_pred ChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCC
Confidence 9999999999999999999999999999999999999999999999999988888899999999999876444
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=9.7e-39 Score=339.55 Aligned_cols=374 Identities=23% Similarity=0.252 Sum_probs=252.8
Q ss_pred CcEEEcccCcccccCCccCCCCCCCCEEEccCCcCCCCcchHhhhcCCcCcEEEcccccCCCcccccccCCCccCeeecc
Q 001439 564 LTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLE 643 (1077)
Q Consensus 564 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 643 (1077)
-+.|++++|.+..+.+..|.++++|+.+++.+|.++ .||... ....+|+.|+|.+|.|+.+..+.+..++.|+.|||+
T Consensus 80 t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~-~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLS 157 (873)
T KOG4194|consen 80 TQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFG-HESGHLEKLDLRHNLISSVTSEELSALPALRSLDLS 157 (873)
T ss_pred eeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hccccc-ccccceeEEeeeccccccccHHHHHhHhhhhhhhhh
Confidence 344555555555555555555555555555555555 555433 123345555555555555555555555555666666
Q ss_pred CccccccCCccccCCCCCcEEEcccCcCCCCCCccccCCCCccEEECCCCcccCCCCccccCCCCCCEEeccCCcCCcCC
Q 001439 644 GNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSL 723 (1077)
Q Consensus 644 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 723 (1077)
.|.|+.+...+|..-.++++|+|++|+++..-...|.++.+|..|.|+.|+++...+..|.++++|+.|+|..|+|.-.-
T Consensus 158 rN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive 237 (873)
T KOG4194|consen 158 RNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVE 237 (873)
T ss_pred hchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeeh
Confidence 65555444444544455666666666665555555555556666666666665555555555666666666666554331
Q ss_pred CCCC-CCccccEEEccCCccccccCcccccccccccEeccccccCCCCCCccccCCCCCCEEEccCccccccCchhccCC
Q 001439 724 PSCY-DFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRL 802 (1077)
Q Consensus 724 p~~~-~~~~L~~L~l~~n~~~~~i~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l 802 (1077)
-..| ++++|+.|.+..|.+. .+..++|..+.++++|+|+.|+++..-..|+.++++|+.|+|++|.|..+-++++..+
T Consensus 238 ~ltFqgL~Sl~nlklqrN~I~-kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsft 316 (873)
T KOG4194|consen 238 GLTFQGLPSLQNLKLQRNDIS-KLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFT 316 (873)
T ss_pred hhhhcCchhhhhhhhhhcCcc-cccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhc
Confidence 2222 5566666666666664 4556688888888888888888887777888888888888888888887778888888
Q ss_pred CCCCEEECcCCcCCCCCCcccccCcccccccCCCCCCCcccceeecCCCcCCcccccccceeeccccceeecccCcCCCC
Q 001439 803 NQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLL 882 (1077)
Q Consensus 803 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 882 (1077)
++|++|||++|+++...+..|..+. .|
T Consensus 317 qkL~~LdLs~N~i~~l~~~sf~~L~-----------------------------------------------------~L 343 (873)
T KOG4194|consen 317 QKLKELDLSSNRITRLDEGSFRVLS-----------------------------------------------------QL 343 (873)
T ss_pred ccceeEeccccccccCChhHHHHHH-----------------------------------------------------Hh
Confidence 8888888888888877776665544 57
Q ss_pred ceEECCCCcCCCCCcccccccccCceeeCcCCcCCCCCCc---cccCCCCCCeEeCCCCcCcccCCCcccCCCCcceEEc
Q 001439 883 SGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPS---TFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSV 959 (1077)
Q Consensus 883 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~---~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~l~l 959 (1077)
+.|.|++|++...-...|..+++|+.|||++|.+++.|.+ .|..|++|+.|+|.+|+|.......|..+..|+.|||
T Consensus 344 e~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL 423 (873)
T KOG4194|consen 344 EELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDL 423 (873)
T ss_pred hhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecC
Confidence 7788888888766666788888888888888888876654 3677888888888888888555567888888888888
Q ss_pred ccccccccCCccccccCCCCcccccCCCCCCCCCC
Q 001439 960 AYNNLSGKIPERAAQFATFNESSYEGNPFLCGPPL 994 (1077)
Q Consensus 960 s~N~l~g~~p~~~~~~~~~~~~~~~gN~~lC~~~l 994 (1077)
.+|.+...-|+.+.++ .+..+.+.--.++|+|.+
T Consensus 424 ~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflCDCql 457 (873)
T KOG4194|consen 424 GDNAIASIQPNAFEPM-ELKELVMNSSSFLCDCQL 457 (873)
T ss_pred CCCcceeecccccccc-hhhhhhhcccceEEeccH
Confidence 8888887777767666 666666666677888865
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=8.4e-37 Score=324.85 Aligned_cols=373 Identities=27% Similarity=0.276 Sum_probs=304.1
Q ss_pred CCccEEEcCCCcccccCCchhhccCCCCcEEEcccCcccccCCccCCCCCCCCEEEccCCcCCCCcchHhhhcCCcCcEE
Q 001439 537 KQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSL 616 (1077)
Q Consensus 537 ~~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L 616 (1077)
+..+.||+++|++. .+....+..+++|+++++..|.++ .+|..-....+|+.|+|.+|.|+ .+.....+.++.|+.|
T Consensus 78 ~~t~~LdlsnNkl~-~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~-sv~se~L~~l~alrsl 154 (873)
T KOG4194|consen 78 SQTQTLDLSNNKLS-HIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLIS-SVTSEELSALPALRSL 154 (873)
T ss_pred cceeeeeccccccc-cCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccc-cccHHHHHhHhhhhhh
Confidence 34567888888887 555555556888888888888887 67765555666888888888887 6766666778888888
Q ss_pred EcccccCCCcccccccCCCccCeeeccCccccccCCccccCCCCCcEEEcccCcCCCCCCccccCCCCccEEECCCCccc
Q 001439 617 ALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIE 696 (1077)
Q Consensus 617 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~ 696 (1077)
||+.|.|+.+....|..-.++++|+|++|.|+..-...|..+.+|..|.|+.|+++...+..|.++++|+.|+|..|+|.
T Consensus 155 DLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~ir 234 (873)
T KOG4194|consen 155 DLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIR 234 (873)
T ss_pred hhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhcccccee
Confidence 88888888877777777778888888888888777788888888888888888888666677888888888888888887
Q ss_pred CCCCccccCCCCCCEEeccCCcCCcCCCCCC-CCccccEEEccCCccccccCcccccccccccEeccccccCCCCCCccc
Q 001439 697 GPIPLEFCQLRILQILDISDNNISGSLPSCY-DFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRV 775 (1077)
Q Consensus 697 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~-~~~~L~~L~l~~n~~~~~i~~~~~~~~~~L~~L~l~~n~l~~~~p~~~ 775 (1077)
-..--+|.++++|+.|.+..|.++..-...| .+.++++|+|..|++. .+..+++.++++|+.|++++|.|..+.++.+
T Consensus 235 ive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~-~vn~g~lfgLt~L~~L~lS~NaI~rih~d~W 313 (873)
T KOG4194|consen 235 IVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQ-AVNEGWLFGLTSLEQLDLSYNAIQRIHIDSW 313 (873)
T ss_pred eehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhh-hhhcccccccchhhhhccchhhhheeecchh
Confidence 5445678888888888888888887666666 7888888888888886 4555588899999999999999998888988
Q ss_pred cCCCCCCEEEccCccccccCchhccCCCCCCEEECcCCcCCCCCCcccccCcccccccCCCCCCCcccceeecCCCcCCc
Q 001439 776 DGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDP 855 (1077)
Q Consensus 776 ~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 855 (1077)
...++|++|+|++|+++...+.+|..+.+|+.|.|++|.++..-...|..++
T Consensus 314 sftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~ls---------------------------- 365 (873)
T KOG4194|consen 314 SFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLS---------------------------- 365 (873)
T ss_pred hhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhh----------------------------
Confidence 8899999999999999988888899999999999999988755444444333
Q ss_pred ccccccceeeccccceeecccCcCCCCceEECCCCcCCCCCcc---cccccccCceeeCcCCcCCCCCCccccCCCCCCe
Q 001439 856 KKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPP---QIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIES 932 (1077)
Q Consensus 856 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~---~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 932 (1077)
+|+.|||++|.+++.|.+ .|.++++|+.|+|.+|++..+....|..+.+||.
T Consensus 366 -------------------------sL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~ 420 (873)
T KOG4194|consen 366 -------------------------SLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEH 420 (873)
T ss_pred -------------------------hhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccce
Confidence 688899999999877654 4888999999999999999777788999999999
Q ss_pred EeCCCCcCcccCCCcccCCCCcceEEccccccccc
Q 001439 933 LDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGK 967 (1077)
Q Consensus 933 LdLs~N~l~~~ip~~l~~l~~L~~l~ls~N~l~g~ 967 (1077)
|||.+|.|...-|..|..+ .|+.|-+..-.+-+.
T Consensus 421 LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflCD 454 (873)
T KOG4194|consen 421 LDLGDNAIASIQPNAFEPM-ELKELVMNSSSFLCD 454 (873)
T ss_pred ecCCCCcceeecccccccc-hhhhhhhcccceEEe
Confidence 9999999998889999988 888887765555443
No 5
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=4e-38 Score=320.88 Aligned_cols=497 Identities=28% Similarity=0.382 Sum_probs=278.0
Q ss_pred CCCcEEecccCcCCCCcccccccccCCCCccEEEccCCcCCCCchhhhcCCCCCcEEecCCCccccccCCccccCCCCcc
Q 001439 335 PSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIE 414 (1077)
Q Consensus 335 ~~L~~L~L~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~l~~l~~L~ 414 (1077)
..++.+.+++|.+....+ .+..+..|..|++++|+++ ..|++++.+..++.++++.|++. .+ |..+..+.++.
T Consensus 45 v~l~~lils~N~l~~l~~----dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~l-p~~i~s~~~l~ 117 (565)
T KOG0472|consen 45 VDLQKLILSHNDLEVLRE----DLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-EL-PEQIGSLISLV 117 (565)
T ss_pred cchhhhhhccCchhhccH----hhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hc-cHHHhhhhhhh
Confidence 345555565555443332 3445566666666666665 45556666666666666666654 34 45555555666
Q ss_pred eeecCCCeeeeecCcccccCCCCccEEecCCCcceeeeeccccCCCCccceeEEeeccCCCCCCccchhccCCCcccEEE
Q 001439 415 DLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVR 494 (1077)
Q Consensus 415 ~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~p~~l~~~~~L~~L~ 494 (1077)
.++.++|.+. ++|+.++.+..++.++
T Consensus 118 ~l~~s~n~~~------------------------------------------------------el~~~i~~~~~l~dl~ 143 (565)
T KOG0472|consen 118 KLDCSSNELK------------------------------------------------------ELPDSIGRLLDLEDLD 143 (565)
T ss_pred hhhcccccee------------------------------------------------------ecCchHHHHhhhhhhh
Confidence 6666555443 1223333344445555
Q ss_pred eccCCCCCCCchhhhhcCCCccEEEccCCCCcCCCccCcCCCCCccEEEcCCCcccccCCchhhccCCCCcEEEcccCcc
Q 001439 495 LSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNAL 574 (1077)
Q Consensus 495 l~~~~~~~~~p~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l 574 (1077)
..+|++....++ +..+.++..+++.+|.+....+.-.. ++.|+.+|...|-+. .+|.+++. +.+|+.|++..|++
T Consensus 144 ~~~N~i~slp~~--~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~-tlP~~lg~-l~~L~~LyL~~Nki 218 (565)
T KOG0472|consen 144 ATNNQISSLPED--MVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLE-TLPPELGG-LESLELLYLRRNKI 218 (565)
T ss_pred ccccccccCchH--HHHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhhhh-cCChhhcc-hhhhHHHHhhhccc
Confidence 555554433332 22444445455544444433332222 455555555555554 55555554 55555566666655
Q ss_pred cccCCccCCCCCCCCEEEccCCcCCCCcchHhhhcCCcCcEEEcccccCCCcccccccCCCccCeeeccCccccccCCcc
Q 001439 575 DGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQS 654 (1077)
Q Consensus 575 ~~~~p~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 654 (1077)
. ..| .|.+|..|++|.+..|.+. .+|......++++.+||+.+|+++ ..|+.
T Consensus 219 ~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-------------------------e~Pde 270 (565)
T KOG0472|consen 219 R-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-------------------------EVPDE 270 (565)
T ss_pred c-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-------------------------cCchH
Confidence 5 334 5555555666666666555 555555555555555555555554 34444
Q ss_pred ccCCCCCcEEEcccCcCCCCCCccccCCCCccEEECCCCcccCCCCccccCCC---CCCEE-------eccCC-------
Q 001439 655 LSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLR---ILQIL-------DISDN------- 717 (1077)
Q Consensus 655 l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~---~L~~L-------~Ls~n------- 717 (1077)
++-+.+|++||+|+|.++ ..|..++++ .|+.|.+.+|.+..+ -..+-+.. -|++| -++..
T Consensus 271 ~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTi-Rr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~ 347 (565)
T KOG0472|consen 271 ICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTI-RREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETA 347 (565)
T ss_pred HHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHH-HHHHHcccHHHHHHHHHHhhccCCCCCCccccccc
Confidence 444444444444444444 344444444 444444444444311 00000000 01110 00000
Q ss_pred --cCCcCCCCCCCCccccEEEccCCccccccCcccccccc--cccEeccccccCCCCCCccccCCCCCCEEEccCccccc
Q 001439 718 --NISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCL--TLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEG 793 (1077)
Q Consensus 718 --~l~~~~p~~~~~~~L~~L~l~~n~~~~~i~~~~~~~~~--~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 793 (1077)
...+..|......+.+.|++++-+++ .+|.+.|.... -...++++.|++. .+|..+..+..+.+.-+..|+..+
T Consensus 348 ~t~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~is 425 (565)
T KOG0472|consen 348 MTLPSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKIS 425 (565)
T ss_pred CCCCCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccc
Confidence 01122233334455666666666664 55664444332 2667777887776 667666666555543333333444
Q ss_pred cCchhccCCCCCCEEECcCCcCCCCCCcccccCcccccccCCCCCCCcccceeecCCCcCCcccccccceeeccccceee
Q 001439 794 EVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYT 873 (1077)
Q Consensus 794 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 873 (1077)
.+|..++.+++|..|+|++|.+. .+|..++.+.
T Consensus 426 fv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv---------------------------------------------- 458 (565)
T KOG0472|consen 426 FVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLV---------------------------------------------- 458 (565)
T ss_pred cchHHHHhhhcceeeecccchhh-hcchhhhhhh----------------------------------------------
Confidence 77777778888888888877665 4454443332
Q ss_pred cccCcCCCCceEECCCCcCCCCCcccccccccCceeeCcCCcCCCCCCccccCCCCCCeEeCCCCcCcccCCCcccCCCC
Q 001439 874 YQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNT 953 (1077)
Q Consensus 874 ~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~ 953 (1077)
.|+.||+|.|+|. .+|..+..++.++.+-.++|++....|+.+.+|.+|..|||.+|.+. .||..++++++
T Consensus 459 -------~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~Lgnmtn 529 (565)
T KOG0472|consen 459 -------RLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTN 529 (565)
T ss_pred -------hhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccc
Confidence 4677888888776 67888888888888777788888777777888888999999998888 78888899999
Q ss_pred cceEEcccccccccCCccccccCCCCcccccCCC
Q 001439 954 LAVFSVAYNNLSGKIPERAAQFATFNESSYEGNP 987 (1077)
Q Consensus 954 L~~l~ls~N~l~g~~p~~~~~~~~~~~~~~~gN~ 987 (1077)
|+.|++++|++. ..|..+---.+...++|-+++
T Consensus 530 L~hLeL~gNpfr-~Pr~~iLmkgT~aiL~ylrdr 562 (565)
T KOG0472|consen 530 LRHLELDGNPFR-QPRHQILMKGTAAILSYLRDR 562 (565)
T ss_pred eeEEEecCCccC-CCHHHHhccChHHHHHHhccc
Confidence 999999999887 333322223344444454443
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=3.2e-37 Score=314.27 Aligned_cols=475 Identities=27% Similarity=0.363 Sum_probs=269.0
Q ss_pred CCccEEEccCCcCCCCchhhhcCCCCCcEEecCCCccccccCCccccCCCCcceeecCCCeeeeecCcccccCCCCccEE
Q 001439 362 VHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIF 441 (1077)
Q Consensus 362 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l 441 (1077)
..|+.+.+++|.+. .+...+.++..|+.|++.+|+++ .. |.+++.+..++.++.+.|++.
T Consensus 45 v~l~~lils~N~l~-~l~~dl~nL~~l~vl~~~~n~l~-~l-p~aig~l~~l~~l~vs~n~ls----------------- 104 (565)
T KOG0472|consen 45 VDLQKLILSHNDLE-VLREDLKNLACLTVLNVHDNKLS-QL-PAAIGELEALKSLNVSHNKLS----------------- 104 (565)
T ss_pred cchhhhhhccCchh-hccHhhhcccceeEEEeccchhh-hC-CHHHHHHHHHHHhhcccchHh-----------------
Confidence 56888888888887 34445778888888888888876 34 555666666666666655433
Q ss_pred ecCCCcceeeeeccccCCCCccceeEEeeccCCCCCCccchhccCCCcccEEEeccCCCCCCCchhhhhcCCCccEEEcc
Q 001439 442 DAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLV 521 (1077)
Q Consensus 442 ~l~~n~l~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~p~~l~~~~~L~~L~l~~~~~~~~~p~~~~~~~~~L~~L~l~ 521 (1077)
.+|..+. ...+++.++++
T Consensus 105 -------------------------------------~lp~~i~-------------------------s~~~l~~l~~s 122 (565)
T KOG0472|consen 105 -------------------------------------ELPEQIG-------------------------SLISLVKLDCS 122 (565)
T ss_pred -------------------------------------hccHHHh-------------------------hhhhhhhhhcc
Confidence 1222222 23333333333
Q ss_pred CCCCcCCCccCcCCCCCccEEEcCCCcccccCCchhhccCCCCcEEEcccCcccccCCccCCCCCCCCEEEccCCcCCCC
Q 001439 522 NDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGE 601 (1077)
Q Consensus 522 ~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~ 601 (1077)
.|.+... +..++.+..+..++..+|+++ ..|..++. +.++..+++.+|.++...|..+ +++.|++||...|-+. .
T Consensus 123 ~n~~~el-~~~i~~~~~l~dl~~~~N~i~-slp~~~~~-~~~l~~l~~~~n~l~~l~~~~i-~m~~L~~ld~~~N~L~-t 197 (565)
T KOG0472|consen 123 SNELKEL-PDSIGRLLDLEDLDATNNQIS-SLPEDMVN-LSKLSKLDLEGNKLKALPENHI-AMKRLKHLDCNSNLLE-T 197 (565)
T ss_pred ccceeec-CchHHHHhhhhhhhccccccc-cCchHHHH-HHHHHHhhccccchhhCCHHHH-HHHHHHhcccchhhhh-c
Confidence 3332211 112233344555555555555 45555544 4555555555555553333222 2555555555555554 5
Q ss_pred cchHhhhcCCcCcEEEcccccCCCcccccccCCCccCeeeccCccccccCCccc-cCCCCCcEEEcccCcCCCCCCcccc
Q 001439 602 IPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSL-SKCSSLQGLFLSNNSLSGKIPRWLG 680 (1077)
Q Consensus 602 ip~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l-~~l~~L~~L~L~~n~l~~~~p~~l~ 680 (1077)
+|+.+. ++.+|+.|++..|++.... .|.++..|++++++.|++. .+|... .+++++.+||+.+|++. ..|+.+.
T Consensus 198 lP~~lg-~l~~L~~LyL~~Nki~~lP--ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~c 272 (565)
T KOG0472|consen 198 LPPELG-GLESLELLYLRRNKIRFLP--EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEIC 272 (565)
T ss_pred CChhhc-chhhhHHHHhhhcccccCC--CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHH
Confidence 555552 4555555555555554322 4455555555555555555 333322 24555555555555555 4555555
Q ss_pred CCCCccEEECCCCcccCCCCccccCCCCCCEEeccCCcCCcCCCCCCCC---ccccEEE-------ccCC----cccccc
Q 001439 681 NLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDF---VCIEQVH-------LSKN----MLHGQL 746 (1077)
Q Consensus 681 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~---~~L~~L~-------l~~n----~~~~~i 746 (1077)
-+.+|++||+++|.++ .+|.+++++ .|+.|-+.+|.+...-.+.... .-|++|. ++.. .-.+..
T Consensus 273 lLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~ 350 (565)
T KOG0472|consen 273 LLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTL 350 (565)
T ss_pred HhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCC
Confidence 5555555555555554 334455555 5555555555443211110000 0000000 0000 000011
Q ss_pred Cccc---ccccccccEeccccccCCCCCCccccCCCC---CCEEEccCccccccCchhccCCCCCCE-EECcCCcCCCCC
Q 001439 747 KEGT---FFNCLTLMILDLSYNHLNGNIPDRVDGLSQ---LSYLILAHNNLEGEVPIQLCRLNQLQL-LDLSNNNLHGHI 819 (1077)
Q Consensus 747 ~~~~---~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~---L~~L~L~~N~l~~~~p~~~~~l~~L~~-L~Ls~N~l~~~~ 819 (1077)
+... .....+.+.|++++-+++ .+|+....-.. ....++++|++. ++|..+..++.++. +++++|.+ +.+
T Consensus 351 ~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~i-sfv 427 (565)
T KOG0472|consen 351 PSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKI-SFV 427 (565)
T ss_pred CCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCcc-ccc
Confidence 1111 112334455555555555 33433222222 445566666655 55555544444432 23333332 233
Q ss_pred CcccccCcccccccCCCCCCCcccceeecCCCcCCcccccccceeeccccceeecccCcCCCCceEECCCCcCCCCCccc
Q 001439 820 PSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQ 899 (1077)
Q Consensus 820 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~ 899 (1077)
|..+..+ +.++.|+|++|-+. .+|.+
T Consensus 428 ~~~l~~l-----------------------------------------------------~kLt~L~L~NN~Ln-~LP~e 453 (565)
T KOG0472|consen 428 PLELSQL-----------------------------------------------------QKLTFLDLSNNLLN-DLPEE 453 (565)
T ss_pred hHHHHhh-----------------------------------------------------hcceeeecccchhh-hcchh
Confidence 4333322 26888999999887 78999
Q ss_pred ccccccCceeeCcCCcCCCCCCccccCCCCCCeEeCCCCcCcccCCCcccCCCCcceEEcccccccccCCccccccCCCC
Q 001439 900 IGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFN 979 (1077)
Q Consensus 900 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~l~ls~N~l~g~~p~~~~~~~~~~ 979 (1077)
++.+..||.||+|+|+|. .+|..+-.+..||.+-.++|++...-|+.+.++..|.+||+.+|.+....|. .+.+.++.
T Consensus 454 ~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~-LgnmtnL~ 531 (565)
T KOG0472|consen 454 MGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPI-LGNMTNLR 531 (565)
T ss_pred hhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhhCChh-hcccccee
Confidence 999999999999999999 8899888888899998899999866666699999999999999999966565 99999999
Q ss_pred cccccCCCCC
Q 001439 980 ESSYEGNPFL 989 (1077)
Q Consensus 980 ~~~~~gN~~l 989 (1077)
.+.+.|||+-
T Consensus 532 hLeL~gNpfr 541 (565)
T KOG0472|consen 532 HLELDGNPFR 541 (565)
T ss_pred EEEecCCccC
Confidence 9999999976
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=1.4e-32 Score=294.00 Aligned_cols=369 Identities=28% Similarity=0.404 Sum_probs=202.6
Q ss_pred CCCccEEEcCCCccc-ccCCchhhccCCCCcEEEcccCcccccCCccCCCCCCCCEEEccCCcCCCCcchHhhhcCCcCc
Q 001439 536 HKQLRLLDVSKNNFQ-GHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLR 614 (1077)
Q Consensus 536 ~~~L~~L~l~~n~l~-~~i~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~ 614 (1077)
++-.+-.|+++|.++ +.+|..+-. +++++.|.|...++. .+|+.++.+.+|++|.+++|++. .+...+ +.++.|+
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~v~q-Mt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGEL-s~Lp~LR 81 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHDVEQ-MTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGEL-SDLPRLR 81 (1255)
T ss_pred cceeecccccCCcCCCCcCchhHHH-hhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhh-ccchhhH
Confidence 344556677777766 345555543 566666666666665 55666666666666666666665 333332 2455555
Q ss_pred EEEcccccCCC-cccccccCCCccCeeeccCccccccCCccccCCCCCcEEEcccCcCCCCCC-ccccCCCCccEEECCC
Q 001439 615 SLALSNNNLEG-HMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIP-RWLGNLTVLRHIIMPK 692 (1077)
Q Consensus 615 ~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~l~~ 692 (1077)
.+.+..|++.. -+|..++.+..|..|||++|++. ..|..+...+++-+|+||+|+|. .+| .-|.+++.|-.|+|++
T Consensus 82 sv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~ 159 (1255)
T KOG0444|consen 82 SVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSN 159 (1255)
T ss_pred HHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhcccc
Confidence 55555555532 23344445555555555555555 34445555555555555555554 233 2334455555555555
Q ss_pred CcccCCCCccccCCCCCCEEeccCCcCCcCCCCCCCCccccEEEccCCccccccCcccccccccccEeccccccCC-CCC
Q 001439 693 NHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLN-GNI 771 (1077)
Q Consensus 693 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~i~~~~~~~~~~L~~L~l~~n~l~-~~~ 771 (1077)
|++. .+|..+..+..|++|+|++|.+... .-..+..+++|++|.+++.+-+ ..+
T Consensus 160 NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hf------------------------QLrQLPsmtsL~vLhms~TqRTl~N~ 214 (1255)
T KOG0444|consen 160 NRLE-MLPPQIRRLSMLQTLKLSNNPLNHF------------------------QLRQLPSMTSLSVLHMSNTQRTLDNI 214 (1255)
T ss_pred chhh-hcCHHHHHHhhhhhhhcCCChhhHH------------------------HHhcCccchhhhhhhcccccchhhcC
Confidence 5554 3344444555555555555544311 0012333455566666554322 345
Q ss_pred CccccCCCCCCEEEccCccccccCchhccCCCCCCEEECcCCcCCCCCCcccccCcccccccCCCCCCCcccceeecCCC
Q 001439 772 PDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGM 851 (1077)
Q Consensus 772 p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 851 (1077)
|..+.++.+|..++++.|.+. ..|+.+.++++|+.|+||+|+|+..- -+.+.+
T Consensus 215 Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~iteL~-~~~~~W------------------------- 267 (1255)
T KOG0444|consen 215 PTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITELN-MTEGEW------------------------- 267 (1255)
T ss_pred CCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCceeeee-ccHHHH-------------------------
Confidence 666666666666666666665 56666666666666666666655210 000000
Q ss_pred cCCcccccccceeeccccceeecccCcCCCCceEECCCCcCCCCCcccccccccCceeeCcCCcCC-CCCCccccCCCCC
Q 001439 852 DVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLA-GPIPSTFSNLRNI 930 (1077)
Q Consensus 852 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L 930 (1077)
..+++|+||+|+++ .+|+++..|+.|+.|.+.+|.++ .-||+.+++|.+|
T Consensus 268 ----------------------------~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~L 318 (1255)
T KOG0444|consen 268 ----------------------------ENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQL 318 (1255)
T ss_pred ----------------------------hhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhh
Confidence 04556666666666 55666666666666666666554 2456666666666
Q ss_pred CeEeCCCCcCcccCCCcccCCCCcceEEcccccccccCCccccccCCCCcccccCCCCCCCCC
Q 001439 931 ESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESSYEGNPFLCGPP 993 (1077)
Q Consensus 931 ~~LdLs~N~l~~~ip~~l~~l~~L~~l~ls~N~l~g~~p~~~~~~~~~~~~~~~gN~~lC~~~ 993 (1077)
+.+..++|.+. ..|..+..+..|+.|.|++|++.. .|+.+.-++.+..+++..||.+.-+|
T Consensus 319 evf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLiT-LPeaIHlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 319 EVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLIT-LPEAIHLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred HHHHhhccccc-cCchhhhhhHHHHHhcccccceee-chhhhhhcCCcceeeccCCcCccCCC
Confidence 66666666665 566666666666666666666653 45545555666666666666665544
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.96 E-value=2.9e-32 Score=291.70 Aligned_cols=366 Identities=24% Similarity=0.328 Sum_probs=277.0
Q ss_pred cCCCccEEEccCCCCcC-CCccCcCCCCCccEEEcCCCcccccCCchhhccCCCCcEEEcccCcccccCCccCCCCCCCC
Q 001439 511 NNTKLRQLSLVNDSLVG-PFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQ 589 (1077)
Q Consensus 511 ~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 589 (1077)
-++-.+-+++++|.+.| ..|.....+++++.|.+...++. .+|.++.. +.+|++|.+++|++. .+-..+..++.|+
T Consensus 5 VLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~-lqkLEHLs~~HN~L~-~vhGELs~Lp~LR 81 (1255)
T KOG0444|consen 5 VLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSR-LQKLEHLSMAHNQLI-SVHGELSDLPRLR 81 (1255)
T ss_pred ccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHH-HhhhhhhhhhhhhhH-hhhhhhccchhhH
Confidence 45667788999999984 56777788999999999999997 89999987 899999999999998 4556788999999
Q ss_pred EEEccCCcCCC-CcchHhhhcCCcCcEEEcccccCCCcccccccCCCccCeeeccCccccccCCccccCCCCCcEEEccc
Q 001439 590 FLDLSNNQLTG-EIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSN 668 (1077)
Q Consensus 590 ~L~Ls~n~l~~-~ip~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~ 668 (1077)
.+++.+|++.. -||..+| .+..|+.|+||+|++.. .|..+..-.++-.|+|++|+|..+...-|.+++.|-.||||+
T Consensus 82 sv~~R~N~LKnsGiP~diF-~l~dLt~lDLShNqL~E-vP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~ 159 (1255)
T KOG0444|consen 82 SVIVRDNNLKNSGIPTDIF-RLKDLTILDLSHNQLRE-VPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSN 159 (1255)
T ss_pred HHhhhccccccCCCCchhc-ccccceeeecchhhhhh-cchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhcccc
Confidence 99999998853 4888887 69999999999999985 567777888999999999999966667788999999999999
Q ss_pred CcCCCCCCccccCCCCccEEECCCCcccCCCCccccCCCCCCEEeccCCcCC-cCCCCCC-CCccccEEEccCCcccccc
Q 001439 669 NSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNIS-GSLPSCY-DFVCIEQVHLSKNMLHGQL 746 (1077)
Q Consensus 669 n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~p~~~-~~~~L~~L~l~~n~~~~~i 746 (1077)
|++. .+|+.+..+..|++|+|++|.+...--..+..+++|++|.+++.+-+ ..+|..+ ++.+|..++++.|.+. .+
T Consensus 160 NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~v 237 (1255)
T KOG0444|consen 160 NRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IV 237 (1255)
T ss_pred chhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cc
Confidence 9998 78888999999999999999886444444556778888999887654 3345554 6667777777777764 45
Q ss_pred CcccccccccccEeccccccCCCCCCccccCCCCCCEEEccCccccccCchhccCCCCCCEEECcCCcCCC-CCCccccc
Q 001439 747 KEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHG-HIPSCFDN 825 (1077)
Q Consensus 747 ~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~ 825 (1077)
|+ .+.++++|+.|+|++|+|+ .+.-..+...+|++|+++.|+++ ..|.+++.++.|+.|.+.+|+++- -||+.++.
T Consensus 238 Pe-cly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGK 314 (1255)
T KOG0444|consen 238 PE-CLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGK 314 (1255)
T ss_pred hH-HHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhh
Confidence 55 6667777777777777776 33344455566777777777776 667777777777777777776652 24444444
Q ss_pred CcccccccCCCCCCCcccceeecCCCcCCcccccccceeeccccceeecccCcCCCCceEECCCCcCCCCCccccccccc
Q 001439 826 TTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTK 905 (1077)
Q Consensus 826 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~ 905 (1077)
+. .|+.+..++|.+. .+|+.+..+..
T Consensus 315 L~-----------------------------------------------------~Levf~aanN~LE-lVPEglcRC~k 340 (1255)
T KOG0444|consen 315 LI-----------------------------------------------------QLEVFHAANNKLE-LVPEGLCRCVK 340 (1255)
T ss_pred hh-----------------------------------------------------hhHHHHhhccccc-cCchhhhhhHH
Confidence 33 4455556666665 56666666666
Q ss_pred CceeeCcCCcCCCCCCccccCCCCCCeEeCCCCcCc
Q 001439 906 IQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLS 941 (1077)
Q Consensus 906 L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~ 941 (1077)
|+.|.|++|++. ..|+.+.-|+.|+.|||..|.--
T Consensus 341 L~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 341 LQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNL 375 (1255)
T ss_pred HHHhccccccee-echhhhhhcCCcceeeccCCcCc
Confidence 777777777666 56666666666777777666443
No 9
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.96 E-value=7e-32 Score=303.59 Aligned_cols=203 Identities=25% Similarity=0.324 Sum_probs=137.7
Q ss_pred CCCCCccEEEcCCCcccccCCchhhccCCCCcEEEcccCcccccCCccCCCCCCCCEEEccCCcCCCCcchHhhhcCCc-
Q 001439 534 HSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVS- 612 (1077)
Q Consensus 534 ~~~~~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~- 612 (1077)
..+.+|+.++...|+++ .+|..++. ..+|+.|.+..|.+. -+|....+++.|++|+|..|++. .+|..++.....
T Consensus 261 ~~~~nle~l~~n~N~l~-~lp~ri~~-~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~ 336 (1081)
T KOG0618|consen 261 GACANLEALNANHNRLV-ALPLRISR-ITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNAS 336 (1081)
T ss_pred HhcccceEecccchhHH-hhHHHHhh-hhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhcccc-ccchHHHhhhhHH
Confidence 34555666666666665 77777775 678888888888887 56667777888888888888887 778777665544
Q ss_pred CcEEEcccccCCCcccccccCCCccCeeeccCccccccCCccccCCCCCcEEEcccCcCCCCCCccccCCCCccEEECCC
Q 001439 613 LRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPK 692 (1077)
Q Consensus 613 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~ 692 (1077)
|..|+.+.|++.......-..++.|+.|.+.+|.++...-..+.+...|+.|+|++|++.......+.++..|++|++++
T Consensus 337 l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSG 416 (1081)
T KOG0618|consen 337 LNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSG 416 (1081)
T ss_pred HHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhccc
Confidence 77777777777655433334566777788888877766666677777788888888877633334566777777777777
Q ss_pred CcccCCCCccccCCCCCCEEeccCCcCCcCCCCCCCCccccEEEccCCcc
Q 001439 693 NHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNML 742 (1077)
Q Consensus 693 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~l~~n~~ 742 (1077)
|+++ .+|.++..+..|++|...+|.+. .+|+...++.|+.++++.|++
T Consensus 417 NkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fPe~~~l~qL~~lDlS~N~L 464 (1081)
T KOG0618|consen 417 NKLT-TLPDTVANLGRLHTLRAHSNQLL-SFPELAQLPQLKVLDLSCNNL 464 (1081)
T ss_pred chhh-hhhHHHHhhhhhHHHhhcCCcee-echhhhhcCcceEEecccchh
Confidence 7776 56677777777777777777665 333333444444444444433
No 10
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.96 E-value=4.7e-32 Score=304.99 Aligned_cols=350 Identities=26% Similarity=0.346 Sum_probs=205.8
Q ss_pred ccEEEcCCCcccccCCchhhccCCCCcEEEcccCcccccCCccCCCCCCCCEEEccCCcCCCCcchHhhhcCCcCcEEEc
Q 001439 539 LRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLAL 618 (1077)
Q Consensus 539 L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L 618 (1077)
.+.+++..|.+.+.++.++.. +.. .|+|.+|.+. -..+..+++|+.|....|++. .+.. .-++|+.|+.
T Consensus 158 ik~~~l~~n~l~~~~~~~i~~-l~~--~ldLr~N~~~---~~dls~~~~l~~l~c~rn~ls-~l~~----~g~~l~~L~a 226 (1081)
T KOG0618|consen 158 IKKLDLRLNVLGGSFLIDIYN-LTH--QLDLRYNEME---VLDLSNLANLEVLHCERNQLS-ELEI----SGPSLTALYA 226 (1081)
T ss_pred chhhhhhhhhcccchhcchhh-hhe--eeecccchhh---hhhhhhccchhhhhhhhcccc-eEEe----cCcchheeee
Confidence 555666666666666555543 222 4666666655 123455666666666666665 3221 2355666666
Q ss_pred ccccCCCcccccccCCCccCeeeccCccccccCCccccCCCCCcEEEcccCcCCCCCCccccCCCCccEEECCCCcccCC
Q 001439 619 SNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGP 698 (1077)
Q Consensus 619 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~ 698 (1077)
++|.++...+. ....+|++++++.|+++ .+|.+++.+.+|+.+++.+|+++ .+|..+...++|+.|.+..|.+. -
T Consensus 227 ~~n~l~~~~~~--p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-y 301 (1081)
T KOG0618|consen 227 DHNPLTTLDVH--PVPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-Y 301 (1081)
T ss_pred ccCcceeeccc--cccccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-h
Confidence 66666532222 22345666666666666 34566666666666666666664 56666666666666666666665 3
Q ss_pred CCccccCCCCCCEEeccCCcCCcCCCCCC--CCccccEEEccCCccccccCcccccccccccEeccccccCCCCCCcccc
Q 001439 699 IPLEFCQLRILQILDISDNNISGSLPSCY--DFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVD 776 (1077)
Q Consensus 699 ~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~--~~~~L~~L~l~~n~~~~~i~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~ 776 (1077)
+|......+.|++|||..|++....+..+ -..+++.++.+.|++. ..|...=...+.|+.|.+.+|.+++..-..+.
T Consensus 302 ip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~-~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~ 380 (1081)
T KOG0618|consen 302 IPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLS-TLPSYEENNHAALQELYLANNHLTDSCFPVLV 380 (1081)
T ss_pred CCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhcccc-ccccccchhhHHHHHHHHhcCcccccchhhhc
Confidence 44455556666666666666653333222 1223555555555554 22221223445677777777777766666677
Q ss_pred CCCCCCEEEccCccccccCchhccCCCCCCEEECcCCcCCCCCCcccccCcccccccCCCCCCCcccceeecCCCcCCcc
Q 001439 777 GLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPK 856 (1077)
Q Consensus 777 ~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 856 (1077)
+..+|+.|+|++|++.......+.++..|++|+||+|+++ .+|.+..++.
T Consensus 381 ~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~----------------------------- 430 (1081)
T KOG0618|consen 381 NFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLG----------------------------- 430 (1081)
T ss_pred cccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhh-----------------------------
Confidence 7777777777777776443344666777777777777776 4455554443
Q ss_pred cccccceeeccccceeecccCcCCCCceEECCCCcCCCCCcccccccccCceeeCcCCcCCC-CCCccccCCCCCCeEeC
Q 001439 857 KQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAG-PIPSTFSNLRNIESLDL 935 (1077)
Q Consensus 857 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~LdL 935 (1077)
.|++|..-+|++. ..| ++..++.|+.+|+|.|+++. .+|.... -++|++|||
T Consensus 431 ------------------------~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p-~p~LkyLdl 483 (1081)
T KOG0618|consen 431 ------------------------RLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALP-SPNLKYLDL 483 (1081)
T ss_pred ------------------------hhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCC-Ccccceeec
Confidence 4566666677766 456 67777777777777777764 3333322 267777777
Q ss_pred CCCcCcccCCCcccCCCCcceEEcccc
Q 001439 936 SYNKLSWKIPYQLVELNTLAVFSVAYN 962 (1077)
Q Consensus 936 s~N~l~~~ip~~l~~l~~L~~l~ls~N 962 (1077)
++|.-.-.--..|..+.++...++.-|
T Consensus 484 SGN~~l~~d~~~l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 484 SGNTRLVFDHKTLKVLKSLSQMDITLN 510 (1081)
T ss_pred cCCcccccchhhhHHhhhhhheecccC
Confidence 777632233444555556666665555
No 11
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.91 E-value=1.3e-26 Score=237.16 Aligned_cols=147 Identities=22% Similarity=0.249 Sum_probs=125.8
Q ss_pred CCCcCCCccCcCCCCCccEEEcCCCcccccCCchhhccCCCCcEEEcccCcccccCCccCCCCCCCCEEEccC-CcCCCC
Q 001439 523 DSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSN-NQLTGE 601 (1077)
Q Consensus 523 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~-n~l~~~ 601 (1077)
|+..|....|-.-.+....++|..|.|+ .||...|..+++|+.|+|++|.|+.+.|++|.++++|..|-+.+ |+|+ .
T Consensus 53 Cr~~GL~eVP~~LP~~tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~ 130 (498)
T KOG4237|consen 53 CRGKGLTEVPANLPPETVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-D 130 (498)
T ss_pred ccCCCcccCcccCCCcceEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-h
Confidence 3334444555555677888999999998 89999998899999999999999999999999999988887776 8888 9
Q ss_pred cchHhhhcCCcCcEEEcccccCCCcccccccCCCccCeeeccCccccccCCccccCCCCCcEEEcccCcC
Q 001439 602 IPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSL 671 (1077)
Q Consensus 602 ip~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 671 (1077)
+|...|.++.+|+.|.+.-|++..+..+.|..+++|..|.+.+|.+..+-..+|..+.+++.+.+..|.+
T Consensus 131 l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~ 200 (498)
T KOG4237|consen 131 LPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPF 200 (498)
T ss_pred hhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCcc
Confidence 9999999999999999999999998889999999999999999998855555888999999999988873
No 12
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.90 E-value=1.3e-25 Score=229.92 Aligned_cols=283 Identities=20% Similarity=0.217 Sum_probs=211.8
Q ss_pred EEEcCCCcccccCCchhhccCCCCcEEEcccCcccccCCccCCCCCCCCEEEccCCcCCCCcchHhhhcCCcCcEEEccc
Q 001439 541 LLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSN 620 (1077)
Q Consensus 541 ~L~l~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~ 620 (1077)
..+-++-.++ ++|..+ .+.-.+++|..|+|+.+.|.+|+.+++|+.|||++|+|+ .|....|.++.+|..|-+.+
T Consensus 50 ~VdCr~~GL~-eVP~~L---P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is-~I~p~AF~GL~~l~~Lvlyg 124 (498)
T KOG4237|consen 50 IVDCRGKGLT-EVPANL---PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNIS-FIAPDAFKGLASLLSLVLYG 124 (498)
T ss_pred eEEccCCCcc-cCcccC---CCcceEEEeccCCcccCChhhccchhhhceecccccchh-hcChHhhhhhHhhhHHHhhc
Confidence 4566666676 788876 467889999999999888899999999999999999998 89999999999998887766
Q ss_pred -ccCCCcccccccCCCccCeeeccCccccccCCccccCCCCCcEEEcccCcCCCCCCccccCCCCccEEECCCCccc---
Q 001439 621 -NNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIE--- 696 (1077)
Q Consensus 621 -n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~--- 696 (1077)
|+|+......|.++.+|+.|.+.-|++.....+.|..+++|..|.+.+|.+....-..|..+.+++.+++..|.+.
T Consensus 125 ~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdC 204 (498)
T KOG4237|consen 125 NNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDC 204 (498)
T ss_pred CCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCcccccc
Confidence 9999999999999999999999999999888899999999999999999998443448999999999999988742
Q ss_pred ---------CCCCccccCCCCCCEEeccCCcCCcCCCCCCCCc--cccEEEccCCccccccCcccccccccccEeccccc
Q 001439 697 ---------GPIPLEFCQLRILQILDISDNNISGSLPSCYDFV--CIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYN 765 (1077)
Q Consensus 697 ---------~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~--~L~~L~l~~n~~~~~i~~~~~~~~~~L~~L~l~~n 765 (1077)
...|..++...-..-..+.++++...-+..+.+. ++..-..+.+...+..|...|..+++|+.|+|++|
T Consensus 205 nL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN 284 (498)
T KOG4237|consen 205 NLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNN 284 (498)
T ss_pred ccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCC
Confidence 2223333333333333344444433333333221 22111223333444556667777778888888888
Q ss_pred cCCCCCCccccCCCCCCEEEccCccccccCchhccCCCCCCEEECcCCcCCCCCCcccccCcc
Q 001439 766 HLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTL 828 (1077)
Q Consensus 766 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~ 828 (1077)
+++++-+.+|.++..++.|.|..|++...-...|.++..|+.|+|.+|+|+...|..|....+
T Consensus 285 ~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~ 347 (498)
T KOG4237|consen 285 KITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFS 347 (498)
T ss_pred ccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccce
Confidence 888777777877778888888888777666666777777888888888877777777765543
No 13
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.89 E-value=4.7e-22 Score=254.24 Aligned_cols=308 Identities=21% Similarity=0.243 Sum_probs=179.3
Q ss_pred CCcEEEcccCcccccCCccCCCCCCCCEEEccCCcCCCCcchHhhhcCCcCcEEEcccccCCCcccccccCCCccCeeec
Q 001439 563 RLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQL 642 (1077)
Q Consensus 563 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 642 (1077)
+|+.|.+.++.+. .+|..| ...+|++|++++|++. .++... ..+++|+.|+++++.....+|. +..+++|+.|++
T Consensus 590 ~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~~~-~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L 664 (1153)
T PLN03210 590 KLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWDGV-HSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKL 664 (1153)
T ss_pred ccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-cccccc-ccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEe
Confidence 3444444444443 334333 2344555555554444 343332 2344455555544433222322 334455555555
Q ss_pred cCccccccCCccccCCCCCcEEEcccCcCCCCCCccccCCCCccEEECCCCcccCCCCccccCCCCCCEEeccCCcCCcC
Q 001439 643 EGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGS 722 (1077)
Q Consensus 643 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 722 (1077)
++|.....+|..+..+++|+.|++++|...+.+|..+ ++++|+.|++++|...+.+|.. .++|+.|++++|.+. .
T Consensus 665 ~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~ 739 (1153)
T PLN03210 665 SDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-E 739 (1153)
T ss_pred cCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-c
Confidence 5554444455555555555555555544333444433 4555555555555443333321 234555555555543 3
Q ss_pred CCCCCCCccccEEEccCCccc---c---ccCcccccccccccEeccccccCCCCCCccccCCCCCCEEEccCccccccCc
Q 001439 723 LPSCYDFVCIEQVHLSKNMLH---G---QLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVP 796 (1077)
Q Consensus 723 ~p~~~~~~~L~~L~l~~n~~~---~---~i~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p 796 (1077)
+|....+++|++|.+.++... + .++...+..+++|+.|++++|...+.+|..++++++|+.|++++|...+.+|
T Consensus 740 lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP 819 (1153)
T PLN03210 740 FPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLP 819 (1153)
T ss_pred ccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeC
Confidence 444444555555555442211 0 1111123345678888888888777888888888888888888886655777
Q ss_pred hhccCCCCCCEEECcCCcCCCCCCcccccCcccccccCCCCCCCcccceeecCCCcCCcccccccceeeccccceeeccc
Q 001439 797 IQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQG 876 (1077)
Q Consensus 797 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 876 (1077)
..+ .+++|+.|++++|.....+|..
T Consensus 820 ~~~-~L~sL~~L~Ls~c~~L~~~p~~------------------------------------------------------ 844 (1153)
T PLN03210 820 TGI-NLESLESLDLSGCSRLRTFPDI------------------------------------------------------ 844 (1153)
T ss_pred CCC-CccccCEEECCCCCcccccccc------------------------------------------------------
Confidence 665 6888888888887644333321
Q ss_pred CcCCCCceEECCCCcCCCCCcccccccccCceeeCcC-CcCCCCCCccccCCCCCCeEeCCCCc
Q 001439 877 RVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSH-NNLAGPIPSTFSNLRNIESLDLSYNK 939 (1077)
Q Consensus 877 ~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~LdLs~N~ 939 (1077)
+.+++.|+|++|.++ .+|..+..+++|+.|+|++ |++. .+|..+..+++|+.++++++.
T Consensus 845 --~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~-~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 845 --STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQ-RVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred --ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcC-ccCcccccccCCCeeecCCCc
Confidence 226778899999887 5788888899999999988 4555 577778888899999988874
No 14
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.89 E-value=1.2e-21 Score=250.55 Aligned_cols=341 Identities=22% Similarity=0.262 Sum_probs=274.7
Q ss_pred CCchhhccCCCCcEEEcccCc------ccccCCccCCCCC-CCCEEEccCCcCCCCcchHhhhcCCcCcEEEcccccCCC
Q 001439 553 IPLEIGDILSRLTVFNISMNA------LDGSIPSSFGNMN-FLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEG 625 (1077)
Q Consensus 553 i~~~~~~~l~~L~~L~L~~n~------l~~~~p~~~~~l~-~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~ 625 (1077)
+....|..+++|+.|.+..+. +...+|..|..++ +|+.|.+.++.+. .+|..+ ...+|+.|++.+|++..
T Consensus 549 i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f--~~~~L~~L~L~~s~l~~ 625 (1153)
T PLN03210 549 IHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF--RPENLVKLQMQGSKLEK 625 (1153)
T ss_pred ecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC--CccCCcEEECcCccccc
Confidence 444556669999999997653 2334677777764 6999999999997 888876 47899999999999875
Q ss_pred cccccccCCCccCeeeccCccccccCCccccCCCCCcEEEcccCcCCCCCCccccCCCCccEEECCCCcccCCCCccccC
Q 001439 626 HMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQ 705 (1077)
Q Consensus 626 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~ 705 (1077)
.+..+..+++|+.|+++++...+.+|. +..+++|+.|++++|.....+|..++++++|+.|++++|...+.+|..+ +
T Consensus 626 -L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~ 702 (1153)
T PLN03210 626 -LWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-N 702 (1153)
T ss_pred -cccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-C
Confidence 556678899999999999876666764 7889999999999998777899999999999999999987666778765 7
Q ss_pred CCCCCEEeccCCcCCcCCCCCCCCccccEEEccCCccccccCcccccccccccEeccccccCC-------CCCCccccCC
Q 001439 706 LRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLN-------GNIPDRVDGL 778 (1077)
Q Consensus 706 l~~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~i~~~~~~~~~~L~~L~l~~n~l~-------~~~p~~~~~l 778 (1077)
+++|+.|++++|...+.+|.. ..+|++|++++|.+. .+|. .+ .+++|+.|++.++... ...|......
T Consensus 703 l~sL~~L~Lsgc~~L~~~p~~--~~nL~~L~L~~n~i~-~lP~-~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~ 777 (1153)
T PLN03210 703 LKSLYRLNLSGCSRLKSFPDI--STNISWLDLDETAIE-EFPS-NL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLS 777 (1153)
T ss_pred CCCCCEEeCCCCCCccccccc--cCCcCeeecCCCccc-cccc-cc-cccccccccccccchhhccccccccchhhhhcc
Confidence 899999999999877777654 468999999999875 5675 33 5788898988875422 1222233345
Q ss_pred CCCCEEEccCccccccCchhccCCCCCCEEECcCCcCCCCCCcccccCcccccccCCCCCCCcccceeecCCCcCCcccc
Q 001439 779 SQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQ 858 (1077)
Q Consensus 779 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 858 (1077)
++|+.|++++|...+.+|.+++++++|+.|++++|+..+.+|... +
T Consensus 778 ~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~--------------------------------- 823 (1153)
T PLN03210 778 PSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-N--------------------------------- 823 (1153)
T ss_pred ccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-C---------------------------------
Confidence 789999999999888999999999999999999987655666533 1
Q ss_pred cccceeeccccceeecccCcCCCCceEECCCCcCCCCCcccccccccCceeeCcCCcCCCCCCccccCCCCCCeEeCCC-
Q 001439 859 ILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSY- 937 (1077)
Q Consensus 859 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~- 937 (1077)
++.|+.|+|++|.....+|.. .++|+.|+|++|.++ .+|.++..+++|+.|++++
T Consensus 824 --------------------L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C 879 (1153)
T PLN03210 824 --------------------LESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGC 879 (1153)
T ss_pred --------------------ccccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCC
Confidence 126889999998776667654 368999999999998 6899999999999999999
Q ss_pred CcCcccCCCcccCCCCcceEEccccc
Q 001439 938 NKLSWKIPYQLVELNTLAVFSVAYNN 963 (1077)
Q Consensus 938 N~l~~~ip~~l~~l~~L~~l~ls~N~ 963 (1077)
|++. .+|..+..++.|+.++++++.
T Consensus 880 ~~L~-~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 880 NNLQ-RVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred CCcC-ccCcccccccCCCeeecCCCc
Confidence 5565 688889999999999999884
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.86 E-value=4e-21 Score=226.22 Aligned_cols=74 Identities=24% Similarity=0.323 Sum_probs=39.2
Q ss_pred CCcEEEcccCcccccCCccCCCCCCCCEEEccCCcCCCCcchHhhhcCCcCcEEEcccccCCCcccccccCCCccCeeec
Q 001439 563 RLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQL 642 (1077)
Q Consensus 563 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 642 (1077)
.-..|+++.+.++ .+|..+. ++|+.|++++|+++ .+|. .+++|++|++++|+++.. |. ..++|+.|++
T Consensus 202 ~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~----lp~~Lk~LdLs~N~LtsL-P~---lp~sL~~L~L 269 (788)
T PRK15387 202 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTSL-PV---LPPGLLELSI 269 (788)
T ss_pred CCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCC----CCCCCcEEEecCCccCcc-cC---cccccceeec
Confidence 4556677777666 4555553 35667777777666 5553 134555555555555532 21 1234444444
Q ss_pred cCcccc
Q 001439 643 EGNHFV 648 (1077)
Q Consensus 643 ~~n~l~ 648 (1077)
++|.+.
T Consensus 270 s~N~L~ 275 (788)
T PRK15387 270 FSNPLT 275 (788)
T ss_pred cCCchh
Confidence 444444
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.84 E-value=2.3e-20 Score=219.77 Aligned_cols=134 Identities=25% Similarity=0.315 Sum_probs=81.8
Q ss_pred CccEEEcCCCcccccCCchhhccCCCCcEEEcccCcccccCCccCCCCCCCCEEEccCCcCCCCcchHhhhcCCcCcEEE
Q 001439 538 QLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLA 617 (1077)
Q Consensus 538 ~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~ 617 (1077)
.-..|+++.+.++ .+|..+. ++|+.|++.+|+++. +|.. .++|++|++++|+++ .+|.. .++|+.|+
T Consensus 202 ~~~~LdLs~~~Lt-sLP~~l~---~~L~~L~L~~N~Lt~-LP~l---p~~Lk~LdLs~N~Lt-sLP~l----p~sL~~L~ 268 (788)
T PRK15387 202 GNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTS-LPAL---PPELRTLEVSGNQLT-SLPVL----PPGLLELS 268 (788)
T ss_pred CCcEEEcCCCCCC-cCCcchh---cCCCEEEccCCcCCC-CCCC---CCCCcEEEecCCccC-cccCc----ccccceee
Confidence 3557788888877 6777653 467888888888773 4532 467888888888887 66642 46778888
Q ss_pred cccccCCCcccccccCCCccCeeeccCccccccCCccccCCCCCcEEEcccCcCCCCCCccccCCCCccEEECCCCccc
Q 001439 618 LSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIE 696 (1077)
Q Consensus 618 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~ 696 (1077)
+++|.++... . ..++|+.|++++|+++. +|.. .++|+.|++++|++++ +|... .+|+.|++++|+++
T Consensus 269 Ls~N~L~~Lp-~---lp~~L~~L~Ls~N~Lt~-LP~~---p~~L~~LdLS~N~L~~-Lp~lp---~~L~~L~Ls~N~L~ 335 (788)
T PRK15387 269 IFSNPLTHLP-A---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPALP---SELCKLWAYNNQLT 335 (788)
T ss_pred ccCCchhhhh-h---chhhcCEEECcCCcccc-cccc---ccccceeECCCCcccc-CCCCc---ccccccccccCccc
Confidence 8888776432 2 12456666777776663 3331 3456666666666653 33211 23444455555444
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.77 E-value=1.2e-18 Score=207.18 Aligned_cols=119 Identities=28% Similarity=0.369 Sum_probs=65.2
Q ss_pred CCCcEEEcccCcccccCCccCCCCCCCCEEEccCCcCCCCcchHhhhcCCcCcEEEcccccCCCcccccccCCCccCeee
Q 001439 562 SRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQ 641 (1077)
Q Consensus 562 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 641 (1077)
.+...|+++++.++ .+|..+. +.|+.|++++|+++ .+|...+ .+|++|++++|+++.. |..+ ..+|+.|+
T Consensus 178 ~~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~---~nL~~L~Ls~N~LtsL-P~~l--~~~L~~L~ 247 (754)
T PRK15370 178 NNKTELRLKILGLT-TIPACIP--EQITTLILDNNELK-SLPENLQ---GNIKTLYANSNQLTSI-PATL--PDTIQEME 247 (754)
T ss_pred cCceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-cCChhhc---cCCCEEECCCCccccC-Chhh--hccccEEE
Confidence 35667788777777 4555442 46778888888777 6776553 4677777777766643 3222 12455555
Q ss_pred ccCccccccCCccccCCCCCcEEEcccCcCCCCCCccccCCCCccEEECCCCccc
Q 001439 642 LEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIE 696 (1077)
Q Consensus 642 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~ 696 (1077)
+++|.+. .+|..+. ++|+.|++++|+++ .+|..+. ++|+.|++++|+++
T Consensus 248 Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt 296 (754)
T PRK15370 248 LSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR 296 (754)
T ss_pred CcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccc
Confidence 5555555 3343332 34555555555554 3343322 23444444444443
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.76 E-value=1.4e-18 Score=206.72 Aligned_cols=222 Identities=26% Similarity=0.389 Sum_probs=123.6
Q ss_pred ccEEEcCCCcccccCCchhhccCCCCcEEEcccCcccccCCccCCCCCCCCEEEccCCcCCCCcchHhhhcCCcCcEEEc
Q 001439 539 LRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLAL 618 (1077)
Q Consensus 539 L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L 618 (1077)
.+.|+++++.++ .+|..+ .+.++.|++++|+++ .+|..+. ++|++|++++|+++ .+|..+. .+|+.|++
T Consensus 180 ~~~L~L~~~~Lt-sLP~~I---p~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~---~~L~~L~L 248 (754)
T PRK15370 180 KTELRLKILGLT-TIPACI---PEQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP---DTIQEMEL 248 (754)
T ss_pred ceEEEeCCCCcC-cCCccc---ccCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh---ccccEEEC
Confidence 445666666655 455543 245666666666666 3444332 36677777777666 5665442 35677777
Q ss_pred ccccCCCcccccccCCCccCeeeccCccccccCCccccCCCCCcEEEcccCcCCCCCCccccCCCCccEEECCCCcccCC
Q 001439 619 SNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGP 698 (1077)
Q Consensus 619 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~ 698 (1077)
++|++.. +|..+. .+|+.|++++|+++ .+|..+. ++|+.|++++|+++ .+|..+. ++|+.|++++|+++.
T Consensus 249 s~N~L~~-LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls~N~Lt~- 318 (754)
T PRK15370 249 SINRITE-LPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR-TLPAHLP--SGITHLNVQSNSLTA- 318 (754)
T ss_pred cCCccCc-CChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccc-cCcccch--hhHHHHHhcCCcccc-
Confidence 7776663 333332 46777777777777 3555443 47888888888777 3454332 356667777776663
Q ss_pred CCccccCCCCCCEEeccCCcCCcCCCCCCCCccccEEEccCCccccccCcccccccccccEeccccccCCCCCCccccCC
Q 001439 699 IPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGL 778 (1077)
Q Consensus 699 ~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~i~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l 778 (1077)
+|..+. ++|+.|++++|.+++ +| . .+ +++|+.|++++|+++ .+|..+.
T Consensus 319 LP~~l~--~sL~~L~Ls~N~Lt~-LP-----------------------~-~l--~~sL~~L~Ls~N~L~-~LP~~lp-- 366 (754)
T PRK15370 319 LPETLP--PGLKTLEAGENALTS-LP-----------------------A-SL--PPELQVLDVSKNQIT-VLPETLP-- 366 (754)
T ss_pred CCcccc--ccceeccccCCcccc-CC-----------------------h-hh--cCcccEEECCCCCCC-cCChhhc--
Confidence 333221 456666666665542 22 1 11 134555555555554 3444332
Q ss_pred CCCCEEEccCccccccCchhccCCCCCCEEECcCCcCC
Q 001439 779 SQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLH 816 (1077)
Q Consensus 779 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 816 (1077)
++|+.|++++|+++ .+|..+. ..|+.|++++|+++
T Consensus 367 ~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~ 401 (754)
T PRK15370 367 PTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLV 401 (754)
T ss_pred CCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc
Confidence 45566666666655 3344332 24555666666655
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.67 E-value=2.5e-18 Score=191.77 Aligned_cols=67 Identities=27% Similarity=0.377 Sum_probs=36.2
Q ss_pred ccccccccEeccccccCCCC----CCccccCCCCCCEEEccCcccccc----CchhccCCCCCCEEECcCCcCCC
Q 001439 751 FFNCLTLMILDLSYNHLNGN----IPDRVDGLSQLSYLILAHNNLEGE----VPIQLCRLNQLQLLDLSNNNLHG 817 (1077)
Q Consensus 751 ~~~~~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~ 817 (1077)
+..+++|+.|++++|.+++. ++..+..+++|+.|++++|.+.+. ++..+..+++|++|++++|++++
T Consensus 161 ~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~ 235 (319)
T cd00116 161 LRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTD 235 (319)
T ss_pred HHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCch
Confidence 44445566666666665531 222333445666666666666532 22334456666666666666553
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.66 E-value=3.8e-18 Score=190.37 Aligned_cols=108 Identities=21% Similarity=0.290 Sum_probs=52.7
Q ss_pred CCceEECCCCcCCCC----CcccccccccCceeeCcCCcCCCCCCcccc-----CCCCCCeEeCCCCcCc----ccCCCc
Q 001439 881 LLSGLDLSCNRLIGH----IPPQIGNLTKIQTLNLSHNNLAGPIPSTFS-----NLRNIESLDLSYNKLS----WKIPYQ 947 (1077)
Q Consensus 881 ~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~-----~l~~L~~LdLs~N~l~----~~ip~~ 947 (1077)
.|+.|+|++|.+++. ++..+..+++|++|++++|.+++.....+. ..+.|+.|++++|.++ ..++..
T Consensus 194 ~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~ 273 (319)
T cd00116 194 NLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEV 273 (319)
T ss_pred CCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHH
Confidence 344455555554422 222344455666666666666542222221 1256666666666665 123334
Q ss_pred ccCCCCcceEEccccccccc----CCcccccc-CCCCcccccCCCC
Q 001439 948 LVELNTLAVFSVAYNNLSGK----IPERAAQF-ATFNESSYEGNPF 988 (1077)
Q Consensus 948 l~~l~~L~~l~ls~N~l~g~----~p~~~~~~-~~~~~~~~~gN~~ 988 (1077)
+..++.|+++++++|+++.. +......+ ..+..+++.+||+
T Consensus 274 ~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 274 LAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred HhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 44456666666666666632 22112223 3445555555553
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.63 E-value=7.2e-18 Score=153.13 Aligned_cols=87 Identities=29% Similarity=0.429 Sum_probs=46.3
Q ss_pred CceEECCCCcCCC-CCcccccccccCceeeCcCCcCCCCCCccccCCCCCCeEeCCCCcCcccCCCcccCCCCcceEEcc
Q 001439 882 LSGLDLSCNRLIG-HIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVA 960 (1077)
Q Consensus 882 L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~l~ls 960 (1077)
|+.|||++|++.. ..|..|..++.|+.|+|+.|.|. .+|..++++++|+.|.+..|.+- ..|..++.++.|+.|.+.
T Consensus 104 levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiq 181 (264)
T KOG0617|consen 104 LEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQ 181 (264)
T ss_pred hhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcc
Confidence 3344444444432 34555555555555555555555 44555555555555555555555 455555555555555555
Q ss_pred cccccccCCc
Q 001439 961 YNNLSGKIPE 970 (1077)
Q Consensus 961 ~N~l~g~~p~ 970 (1077)
+|+++-..|+
T Consensus 182 gnrl~vlppe 191 (264)
T KOG0617|consen 182 GNRLTVLPPE 191 (264)
T ss_pred cceeeecChh
Confidence 5555544444
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.63 E-value=6.4e-18 Score=153.42 Aligned_cols=187 Identities=29% Similarity=0.486 Sum_probs=149.5
Q ss_pred CCCCCCccccEEEccCCccccccCcccccccccccEeccccccCCCCCCccccCCCCCCEEEccCccccccCchhccCCC
Q 001439 724 PSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLN 803 (1077)
Q Consensus 724 p~~~~~~~L~~L~l~~n~~~~~i~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~ 803 (1077)
|..|+....+.|.+++|+++ .+|+ .++.+.+|+.|++.+|+++ .+|..++.+++|+.|+++-|++. ..|..|+.++
T Consensus 27 ~gLf~~s~ITrLtLSHNKl~-~vpp-nia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p 102 (264)
T KOG0617|consen 27 PGLFNMSNITRLTLSHNKLT-VVPP-NIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFP 102 (264)
T ss_pred ccccchhhhhhhhcccCcee-ecCC-cHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCc
Confidence 33344445555555555554 4555 6888999999999999998 78999999999999999999998 8899999999
Q ss_pred CCCEEECcCCcCCCC-CCcccccCcccccccCCCCCCCcccceeecCCCcCCcccccccceeeccccceeecccCcCCCC
Q 001439 804 QLQLLDLSNNNLHGH-IPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLL 882 (1077)
Q Consensus 804 ~L~~L~Ls~N~l~~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 882 (1077)
.|+.|||.+|++... .|.-|--++ .|
T Consensus 103 ~levldltynnl~e~~lpgnff~m~-----------------------------------------------------tl 129 (264)
T KOG0617|consen 103 ALEVLDLTYNNLNENSLPGNFFYMT-----------------------------------------------------TL 129 (264)
T ss_pred hhhhhhccccccccccCCcchhHHH-----------------------------------------------------HH
Confidence 999999999998742 344332222 56
Q ss_pred ceEECCCCcCCCCCcccccccccCceeeCcCCcCCCCCCccccCCCCCCeEeCCCCcCcccCCCcccCCCCc---ceEEc
Q 001439 883 SGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTL---AVFSV 959 (1077)
Q Consensus 883 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L---~~l~l 959 (1077)
+.|+|+.|.|. .+|..++++++||.|.+..|.+- ..|..++.++.|+.|.+.+|+++ .+|..++++.-+ +.+.+
T Consensus 130 ralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~l~l~~~k~v~r~ 206 (264)
T KOG0617|consen 130 RALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELANLDLVGNKQVMRM 206 (264)
T ss_pred HHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhhhhhhhhHHHHhh
Confidence 78999999998 78999999999999999999998 78999999999999999999999 788887765432 34555
Q ss_pred ccccccccCCc
Q 001439 960 AYNNLSGKIPE 970 (1077)
Q Consensus 960 s~N~l~g~~p~ 970 (1077)
.+|++..+|.+
T Consensus 207 E~NPwv~pIae 217 (264)
T KOG0617|consen 207 EENPWVNPIAE 217 (264)
T ss_pred hhCCCCChHHH
Confidence 66666655543
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.58 E-value=3.9e-15 Score=177.52 Aligned_cols=119 Identities=33% Similarity=0.547 Sum_probs=107.3
Q ss_pred CCceEECCCCcCCCCCcccccccccCceeeCcCCcCCCCCCccccCCCCCCeEeCCCCcCcccCCCcccCCCCcceEEcc
Q 001439 881 LLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVA 960 (1077)
Q Consensus 881 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~l~ls 960 (1077)
.++.|+|++|.++|.+|..++.+++|+.|+|++|.++|.+|..++.+++|+.|||++|+++|.+|..++++++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCcccccc-CCCCcccccCCCCCCCCCCCCCCC
Q 001439 961 YNNLSGKIPERAAQF-ATFNESSYEGNPFLCGPPLPICIS 999 (1077)
Q Consensus 961 ~N~l~g~~p~~~~~~-~~~~~~~~~gN~~lC~~~l~~~c~ 999 (1077)
+|+++|.+|..+... .....+++.+|+.+|+.|....|.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~ 538 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG 538 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence 999999999865542 345567899999999976544453
No 24
>PLN03150 hypothetical protein; Provisional
Probab=99.41 E-value=1.2e-12 Score=156.45 Aligned_cols=156 Identities=29% Similarity=0.458 Sum_probs=105.4
Q ss_pred cccCcHHHHHHHHhchhhccCCCCcccCCCCCCCCCCCc----cccceEecCCCCceEEEEcCCcccCcccccccccccc
Q 001439 24 SEGCLNHERFALLQLKLFFIDPYNYLLDWVDDEGATDCC----QWERVSCNNTMGRVVVLDLSQTHRGEYWYLNASLFTP 99 (1077)
Q Consensus 24 ~~~c~~~~~~all~~k~~~~~~~~~l~~w~~~~~~~~~c----~w~gv~c~~~~~~v~~l~L~~~~~~~~~~~~~~~~~~ 99 (1077)
...+.++|.+||+++|+++.+|.. .+|.+ ..|| .|.||.|...... .
T Consensus 366 ~~~t~~~~~~aL~~~k~~~~~~~~--~~W~g----~~C~p~~~~w~Gv~C~~~~~~-----------------------~ 416 (623)
T PLN03150 366 ESKTLLEEVSALQTLKSSLGLPLR--FGWNG----DPCVPQQHPWSGADCQFDSTK-----------------------G 416 (623)
T ss_pred ccccCchHHHHHHHHHHhcCCccc--CCCCC----CCCCCcccccccceeeccCCC-----------------------C
Confidence 445677899999999999876542 48964 4453 7999999631100 0
Q ss_pred CcCCcEeeCCCCCCCccccchhhhhccCCCCCcEEeCCCCCCCchhhHHhhccCCCCEEeCCCCcCCCccCCcchhhccC
Q 001439 100 FQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLARLSSLTSLDLSANRLKGSIDIKGPKRLSR 179 (1077)
Q Consensus 100 l~~L~~L~Ls~n~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~ 179 (1077)
...++.|+|++|.+.|..+. .++.+++|++|+|++|.+.+.+|..++++++|++|+|++|.+.|.+| ..+++
T Consensus 417 ~~~v~~L~L~~n~L~g~ip~----~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP----~~l~~ 488 (623)
T PLN03150 417 KWFIDGLGLDNQGLRGFIPN----DISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIP----ESLGQ 488 (623)
T ss_pred ceEEEEEECCCCCccccCCH----HHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCc----hHHhc
Confidence 01133444455555555443 36777777888888777777777777778888888888887777666 57777
Q ss_pred CCCCcEEECCCCCCCchhhHhhhcc-CCCcEEEcCCCC
Q 001439 180 LNNLKVFDLSGNLFNNSILSSLARL-SSLRSLLLYDNR 216 (1077)
Q Consensus 180 l~~L~~L~Ls~n~i~~~~~~~l~~l-~~L~~L~L~~n~ 216 (1077)
+++|++|+|++|.+++.+|..++.+ .++..+++.+|.
T Consensus 489 L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 489 LTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CCCCCEEECcCCcccccCChHHhhccccCceEEecCCc
Confidence 7778888888777777777776653 355566666554
No 25
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.28 E-value=1.7e-12 Score=132.98 Aligned_cols=97 Identities=23% Similarity=0.203 Sum_probs=56.2
Q ss_pred ccCcCCcEeeCCCCCCCccccchhhhhccCCCCCcEEeCCCC---CCCchhhHHh-------hccCCCCEEeCCCCcCCC
Q 001439 98 TPFQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGN---LFNNSILSSL-------ARLSSLTSLDLSANRLKG 167 (1077)
Q Consensus 98 ~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~l~~L~~L~Ls~n---~l~~~~~~~l-------~~l~~L~~L~Ls~n~l~~ 167 (1077)
..+..+++++||+|.|.........+.+.+.+.||..++|.- +...++|+.+ ..+++|++||||+|.+..
T Consensus 27 ~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~ 106 (382)
T KOG1909|consen 27 EPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGP 106 (382)
T ss_pred cccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCc
Confidence 455677777777777765555555566777778888877764 2233455544 234566666666666543
Q ss_pred ccCCcchhhccCCCCCcEEECCCCCCC
Q 001439 168 SIDIKGPKRLSRLNNLKVFDLSGNLFN 194 (1077)
Q Consensus 168 ~~~~~~~~~l~~l~~L~~L~Ls~n~i~ 194 (1077)
..+..+...+.+++.|++|.|.+|.+.
T Consensus 107 ~g~~~l~~ll~s~~~L~eL~L~N~Glg 133 (382)
T KOG1909|consen 107 KGIRGLEELLSSCTDLEELYLNNCGLG 133 (382)
T ss_pred cchHHHHHHHHhccCHHHHhhhcCCCC
Confidence 333222333455555666666555543
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.22 E-value=7e-13 Score=143.46 Aligned_cols=170 Identities=32% Similarity=0.508 Sum_probs=118.9
Q ss_pred EEccCCccccccCcccccccccccEeccccccCCCCCCccccCCCCCCEEEccCccccccCchhccCCCCCCEEECcCCc
Q 001439 735 VHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNN 814 (1077)
Q Consensus 735 L~l~~n~~~~~i~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~ 814 (1077)
.+++.|++. .+|. .+..+..|+.+.+..|.+. .+|..+.++..|.+|+|+.|++. ..|..++.|+ |+.|-+++|+
T Consensus 80 aDlsrNR~~-elp~-~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNk 154 (722)
T KOG0532|consen 80 ADLSRNRFS-ELPE-EACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNK 154 (722)
T ss_pred hhccccccc-cCch-HHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCc
Confidence 344444442 4555 5666667777777777776 67777777777777777777776 6666666665 6777777777
Q ss_pred CCCCCCcccccCcccccccCCCCCCCcccceeecCCCcCCcccccccceeeccccceeecccCcCCCCceEECCCCcCCC
Q 001439 815 LHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIG 894 (1077)
Q Consensus 815 l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~ 894 (1077)
++ .+|..++.. ..|..||.+.|++.
T Consensus 155 l~-~lp~~ig~~-----------------------------------------------------~tl~~ld~s~nei~- 179 (722)
T KOG0532|consen 155 LT-SLPEEIGLL-----------------------------------------------------PTLAHLDVSKNEIQ- 179 (722)
T ss_pred cc-cCCcccccc-----------------------------------------------------hhHHHhhhhhhhhh-
Confidence 76 334333311 14566777888776
Q ss_pred CCcccccccccCceeeCcCCcCCCCCCccccCCCCCCeEeCCCCcCcccCCCcccCCCCcceEEccccccccc
Q 001439 895 HIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGK 967 (1077)
Q Consensus 895 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~l~ls~N~l~g~ 967 (1077)
.+|..++++.+|+.|++..|++. ..|..+..|+ |..||+|.|+++ .||-+|.+|+.|++|-|.+|+|..+
T Consensus 180 slpsql~~l~slr~l~vrRn~l~-~lp~El~~Lp-Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLqSP 249 (722)
T KOG0532|consen 180 SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLP-LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQSP 249 (722)
T ss_pred hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCc-eeeeecccCcee-ecchhhhhhhhheeeeeccCCCCCC
Confidence 57778888888888888888887 5566666654 778888888888 7888888888888888888888743
No 27
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.20 E-value=4.1e-13 Score=145.25 Aligned_cols=175 Identities=29% Similarity=0.513 Sum_probs=153.8
Q ss_pred ccccccEeccccccCCCCCCccccCCCCCCEEEccCccccccCchhccCCCCCCEEECcCCcCCCCCCcccccCcccccc
Q 001439 753 NCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERY 832 (1077)
Q Consensus 753 ~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~ 832 (1077)
.+..-...|++.|++. .+|..+..+..|+.+.|..|.+. .+|..++++..|.+|||+.|+++ ..|..+..+.
T Consensus 73 ~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp----- 144 (722)
T KOG0532|consen 73 DLTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP----- 144 (722)
T ss_pred cccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-----
Confidence 3455578899999998 88999988999999999999998 89999999999999999999998 4454444332
Q ss_pred cCCCCCCCcccceeecCCCcCCcccccccceeeccccceeecccCcCCCCceEECCCCcCCCCCcccccccccCceeeCc
Q 001439 833 NNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLS 912 (1077)
Q Consensus 833 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls 912 (1077)
|+.|-+++|+++ .+|+.++.+..|..||.|
T Consensus 145 -------------------------------------------------Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s 174 (722)
T KOG0532|consen 145 -------------------------------------------------LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVS 174 (722)
T ss_pred -------------------------------------------------ceeEEEecCccc-cCCcccccchhHHHhhhh
Confidence 677899999998 789999999999999999
Q ss_pred CCcCCCCCCccccCCCCCCeEeCCCCcCcccCCCcccCCCCcceEEcccccccccCCccccccCCCCcccccCCCCC
Q 001439 913 HNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESSYEGNPFL 989 (1077)
Q Consensus 913 ~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~l~ls~N~l~g~~p~~~~~~~~~~~~~~~gN~~l 989 (1077)
.|++. .+|..++.+++|+.|.++.|++. ..|..+..|+ |..||+|+|+++ .||..+..+..+..+-++.||..
T Consensus 175 ~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~Lp-Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 175 KNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLP-LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred hhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCc-eeeeecccCcee-ecchhhhhhhhheeeeeccCCCC
Confidence 99999 77888999999999999999999 6788888665 899999999998 57877899999999999999965
No 28
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.13 E-value=7.9e-11 Score=135.13 Aligned_cols=155 Identities=37% Similarity=0.560 Sum_probs=87.5
Q ss_pred cccEeccccccCCCCCCccccCCCCCCEEEccCccccccCchhccCCCCCCEEECcCCcCCCCCCcccccCcccccccCC
Q 001439 756 TLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNG 835 (1077)
Q Consensus 756 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~ 835 (1077)
+|+.|++++|.+. .+|..++.+++|+.|++++|++. .+|...+.++.|+.|++++|+++. +|....
T Consensus 141 nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~~-l~~~~~----------- 206 (394)
T COG4886 141 NLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKISD-LPPEIE----------- 206 (394)
T ss_pred hcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheeccCCcccc-Cchhhh-----------
Confidence 5666666666655 34445556666666666666665 444444455666666666666552 221100
Q ss_pred CCCCCcccceeecCCCcCCcccccccceeeccccceeecccCcCCCCceEECCCCcCCCCCcccccccccCceeeCcCCc
Q 001439 836 SSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNN 915 (1077)
Q Consensus 836 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~ 915 (1077)
.+..|+++++++|.+. .++..+.++..+..|.+++|+
T Consensus 207 ------------------------------------------~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~ 243 (394)
T COG4886 207 ------------------------------------------LLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNK 243 (394)
T ss_pred ------------------------------------------hhhhhhhhhhcCCcce-ecchhhhhcccccccccCCce
Confidence 1113555666666432 345556666666666666666
Q ss_pred CCCCCCccccCCCCCCeEeCCCCcCcccCCCcccCCCCcceEEcccccccccCCc
Q 001439 916 LAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPE 970 (1077)
Q Consensus 916 l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~l~ls~N~l~g~~p~ 970 (1077)
+. .++..++.+++++.|++++|+++ .++. ++.+..++.+++++|.++...|.
T Consensus 244 ~~-~~~~~~~~l~~l~~L~~s~n~i~-~i~~-~~~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 244 LE-DLPESIGNLSNLETLDLSNNQIS-SISS-LGSLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred ee-eccchhccccccceecccccccc-cccc-ccccCccCEEeccCccccccchh
Confidence 65 22555666666666666666666 3333 66666666666666666655444
No 29
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=7.6e-11 Score=124.24 Aligned_cols=190 Identities=29% Similarity=0.355 Sum_probs=130.1
Q ss_pred ccCcCCcEeeCCCCCCCccccchhhhhccCCCCCcEEeCCCCCCCc--hhhHHhhccCCCCEEeCCCCcCCCccCCcchh
Q 001439 98 TPFQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNN--SILSSLARLSSLTSLDLSANRLKGSIDIKGPK 175 (1077)
Q Consensus 98 ~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~--~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~ 175 (1077)
+++++||.+.|.+++....... +....|++++.||||+|-+.. .+..-...|++|+.|+|+.|.+.-.... .
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~---~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s---~ 191 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIE---EYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISS---N 191 (505)
T ss_pred hhHHhhhheeecCccccccchh---hhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccc---c
Confidence 3578888889988876543322 235678999999999997753 2334456699999999999987643332 1
Q ss_pred hccCCCCCcEEECCCCCCCchh-hHhhhccCCCcEEEcCCCCCCCCcChhhhhcccccceeecCCCcCCCCchhhhccCC
Q 001439 176 RLSRLNNLKVFDLSGNLFNNSI-LSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGL 254 (1077)
Q Consensus 176 ~l~~l~~L~~L~Ls~n~i~~~~-~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l 254 (1077)
.-..+++|+.|.|++|.++... ......+|+|+.|++..|... .+......-++.|++|||++|++-++......+.+
T Consensus 192 ~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~-~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l 270 (505)
T KOG3207|consen 192 TTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEII-LIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTL 270 (505)
T ss_pred chhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhccccc-ceecchhhhhhHHhhccccCCcccccccccccccc
Confidence 2236788999999999887533 334456799999999999532 23334556678899999999988877666667777
Q ss_pred cccceeeecccccCCcchh----hhhcCCCCCcceeccccCccc
Q 001439 255 RKLSYLHLLRVGIRDGSKL----LQSMGSFPSLNTLDLSYNNFT 294 (1077)
Q Consensus 255 ~~L~~L~l~~~~~~~~~~~----~~~l~~~~~L~~L~l~~~~~~ 294 (1077)
+.|..|.++.+++...... ......+++|+.|++..|++.
T Consensus 271 ~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~ 314 (505)
T KOG3207|consen 271 PGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR 314 (505)
T ss_pred cchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccc
Confidence 8888887777776543221 122344556666666666553
No 30
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.06 E-value=1.8e-10 Score=111.82 Aligned_cols=112 Identities=29% Similarity=0.384 Sum_probs=40.8
Q ss_pred ccCCCCCcEEeCCCCCCCchhhHHhh-ccCCCCEEeCCCCcCCCccCCcchhhccCCCCCcEEECCCCCCCchhhHhhhc
Q 001439 125 LSRLSNLKMLNLVGNLFNNSILSSLA-RLSSLTSLDLSANRLKGSIDIKGPKRLSRLNNLKVFDLSGNLFNNSILSSLAR 203 (1077)
Q Consensus 125 l~~l~~L~~L~Ls~n~l~~~~~~~l~-~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~ 203 (1077)
+.+..++++|+|++|.|+. .+.++ .+.+|+.||+++|.++.. +.+..+++|++|++++|.++.........
T Consensus 15 ~~n~~~~~~L~L~~n~I~~--Ie~L~~~l~~L~~L~Ls~N~I~~l------~~l~~L~~L~~L~L~~N~I~~i~~~l~~~ 86 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQIST--IENLGATLDKLEVLDLSNNQITKL------EGLPGLPRLKTLDLSNNRISSISEGLDKN 86 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S--------TT----TT--EEE--SS---S-CHHHHHH
T ss_pred ccccccccccccccccccc--ccchhhhhcCCCEEECCCCCCccc------cCccChhhhhhcccCCCCCCccccchHHh
Confidence 4455667888888887763 24555 477888888888887743 36777888888888888888643322246
Q ss_pred cCCCcEEEcCCCCCCCCcChhhhhcccccceeecCCCcCCC
Q 001439 204 LSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDN 244 (1077)
Q Consensus 204 l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~i~~ 244 (1077)
+++|++|++++|+|...-....++.+++|++|++.+|.++.
T Consensus 87 lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~ 127 (175)
T PF14580_consen 87 LPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCE 127 (175)
T ss_dssp -TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGG
T ss_pred CCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccc
Confidence 78888888888888755556677788888888888887653
No 31
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.02 E-value=3.9e-10 Score=129.44 Aligned_cols=83 Identities=34% Similarity=0.481 Sum_probs=36.4
Q ss_pred CccCeeeccCccccccCCccccCCC-CCcEEEcccCcCCCCCCccccCCCCccEEECCCCcccCCCCccccCCCCCCEEe
Q 001439 635 TNLIWLQLEGNHFVGEIPQSLSKCS-SLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILD 713 (1077)
Q Consensus 635 ~~L~~L~L~~n~l~~~~~~~l~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 713 (1077)
+.++.|++.+|.++ .++....... +|+.|++++|++. .+|..++.++.|+.|++++|++. .+|...+..+.|+.|+
T Consensus 116 ~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ 192 (394)
T COG4886 116 TNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLD 192 (394)
T ss_pred cceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhhee
Confidence 44555555555555 2333333332 4555555555544 33333444444444444444444 2222222334444444
Q ss_pred ccCCcCC
Q 001439 714 ISDNNIS 720 (1077)
Q Consensus 714 Ls~n~l~ 720 (1077)
+++|++.
T Consensus 193 ls~N~i~ 199 (394)
T COG4886 193 LSGNKIS 199 (394)
T ss_pred ccCCccc
Confidence 4444443
No 32
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.99 E-value=3.9e-10 Score=115.90 Aligned_cols=170 Identities=22% Similarity=0.256 Sum_probs=111.6
Q ss_pred CCceEEEEcCCcccCc-cccccccccccCcCCcEeeCCCCCCCccccchh-------hhhccCCCCCcEEeCCCCCCCch
Q 001439 73 MGRVVVLDLSQTHRGE-YWYLNASLFTPFQQLESLDLRDNDIAGCVENEG-------LERLSRLSNLKMLNLVGNLFNNS 144 (1077)
Q Consensus 73 ~~~v~~l~L~~~~~~~-~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~-------~~~l~~l~~L~~L~Ls~n~l~~~ 144 (1077)
...+++++|+|+..+. ..+.-+..+++-++|+..++++- ++|...... .+++..+++|++||||.|.+...
T Consensus 29 ~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~ 107 (382)
T KOG1909|consen 29 MDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPK 107 (382)
T ss_pred cCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCcc
Confidence 3468999999994332 22334556778889999999974 344433322 24456788999999999998755
Q ss_pred hhHH----hhccCCCCEEeCCCCcCCCccCCc---------chhhccCCCCCcEEECCCCCCCch----hhHhhhccCCC
Q 001439 145 ILSS----LARLSSLTSLDLSANRLKGSIDIK---------GPKRLSRLNNLKVFDLSGNLFNNS----ILSSLARLSSL 207 (1077)
Q Consensus 145 ~~~~----l~~l~~L~~L~Ls~n~l~~~~~~~---------~~~~l~~l~~L~~L~Ls~n~i~~~----~~~~l~~l~~L 207 (1077)
.++. +.+++.|++|.|.+|.+...-... ..+.+.+-+.|+++....|.+... +...+...+.|
T Consensus 108 g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~l 187 (382)
T KOG1909|consen 108 GIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTL 187 (382)
T ss_pred chHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhcccc
Confidence 4444 456899999999999875221111 112345567788888888877642 33445566778
Q ss_pred cEEEcCCCCCCCC---cChhhhhcccccceeecCCCcCC
Q 001439 208 RSLLLYDNRLEGS---IDVKEFDSLSNLEELDMSYNEID 243 (1077)
Q Consensus 208 ~~L~L~~n~l~~~---~~~~~l~~l~~L~~L~Ls~n~i~ 243 (1077)
+.+.+..|.|... .-...+..+++|+.|||..|.++
T Consensus 188 eevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft 226 (382)
T KOG1909|consen 188 EEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFT 226 (382)
T ss_pred ceEEEecccccCchhHHHHHHHHhCCcceeeecccchhh
Confidence 8888877776521 11244566677777777777654
No 33
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.95 E-value=3.4e-10 Score=119.45 Aligned_cols=218 Identities=24% Similarity=0.259 Sum_probs=135.0
Q ss_pred hhhccCCCcEEEcCCCCCCCCcCh-hhhhcccccceeecCCCcCCCCc-hhhhccCCcccceeeecccccCCcchhhhhc
Q 001439 200 SLARLSSLRSLLLYDNRLEGSIDV-KEFDSLSNLEELDMSYNEIDNFE-VPQACSGLRKLSYLHLLRVGIRDGSKLLQSM 277 (1077)
Q Consensus 200 ~l~~l~~L~~L~L~~n~l~~~~~~-~~l~~l~~L~~L~Ls~n~i~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l 277 (1077)
.=+++.+|+...|.++.+. .++. +....+++++.|||+.|-+..+. +...+..+++|+.|+++.|.+..
T Consensus 116 kQsn~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~-------- 186 (505)
T KOG3207|consen 116 KQSNLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSN-------- 186 (505)
T ss_pred HhhhHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccC--------
Confidence 3457889999999998876 2222 46778899999999999776553 33444555555555555554432
Q ss_pred CCCCCcceeccccCcccccccccccCCccCccccEEecchhHhhhhhhhHHHHhccCCCCcEEecccCcCCCCccccccc
Q 001439 278 GSFPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQG 357 (1077)
Q Consensus 278 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~~~~~~~~~~ 357 (1077)
..... .-..++.|+.|.++.| .++.....++...+|+|+.|.+..|........ .
T Consensus 187 ------------------~~~s~--~~~~l~~lK~L~l~~C--Gls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~---~ 241 (505)
T KOG3207|consen 187 ------------------FISSN--TTLLLSHLKQLVLNSC--GLSWKDVQWILLTFPSLEVLYLEANEIILIKAT---S 241 (505)
T ss_pred ------------------Ccccc--chhhhhhhheEEeccC--CCCHHHHHHHHHhCCcHHHhhhhcccccceecc---h
Confidence 21111 0113455666777766 333444445555588888888888742111111 2
Q ss_pred ccCCCCccEEEccCCcCCCCc-hhhhcCCCCCcEEecCCCccccccCCcc-----ccCCCCcceeecCCCeeeeecCccc
Q 001439 358 LCPLVHLQELHMADNDLRGSL-PWCLANMTSLRILDVSSNQLIGSISSSP-----LIHLTSIEDLILSDNHFQIPISLEP 431 (1077)
Q Consensus 358 l~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~Ls~n~l~~~i~~~~-----l~~l~~L~~L~L~~n~l~~~~~~~~ 431 (1077)
..-+..|++|+|++|++.... -...+.++.|+.|+++.+.+..--.++. ...+++|+.|++..|++..-.....
T Consensus 242 ~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~ 321 (505)
T KOG3207|consen 242 TKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNH 321 (505)
T ss_pred hhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccch
Confidence 234567888888888776422 1345678888888888887763221222 2567888888888888765445555
Q ss_pred ccCCCCccEEecCCCcceee
Q 001439 432 LFNHSRLKIFDAENNEINAE 451 (1077)
Q Consensus 432 ~~~l~~L~~l~l~~n~l~~~ 451 (1077)
+..+++|+.+.+..|.+..+
T Consensus 322 l~~l~nlk~l~~~~n~ln~e 341 (505)
T KOG3207|consen 322 LRTLENLKHLRITLNYLNKE 341 (505)
T ss_pred hhccchhhhhhccccccccc
Confidence 66667777777777766543
No 34
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.93 E-value=2.3e-10 Score=114.16 Aligned_cols=61 Identities=41% Similarity=0.455 Sum_probs=42.9
Q ss_pred ccccccEeccccccCCCCCCccccCCCCCCEEEccCccccccCchhccCCCCCCEEECcCCcCC
Q 001439 753 NCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLH 816 (1077)
Q Consensus 753 ~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 816 (1077)
....|+.+||++|.|+ .+.+...-.|.++.|++++|.+... . .+..+++|+.||||+|.++
T Consensus 282 TWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v-~-nLa~L~~L~~LDLS~N~Ls 342 (490)
T KOG1259|consen 282 TWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV-Q-NLAELPQLQLLDLSGNLLA 342 (490)
T ss_pred hHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee-h-hhhhcccceEeecccchhH
Confidence 3456778888888777 4566677777888888888877632 2 2666777777777777665
No 35
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.92 E-value=7.4e-10 Score=134.84 Aligned_cols=130 Identities=31% Similarity=0.342 Sum_probs=93.6
Q ss_pred cCcCCcEeeCCCCC--CCccccchhhhhccCCCCCcEEeCCCCCCCchhhHHhhccCCCCEEeCCCCcCCCccCCcchhh
Q 001439 99 PFQQLESLDLRDND--IAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLARLSSLTSLDLSANRLKGSIDIKGPKR 176 (1077)
Q Consensus 99 ~l~~L~~L~Ls~n~--~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~ 176 (1077)
..+.|++|-+.+|. +.... .++|..+++|++|||++|.--+.+|++|++|-+||||+++++.+. .+|..
T Consensus 543 ~~~~L~tLll~~n~~~l~~is----~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-----~LP~~ 613 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLEIS----GEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-----HLPSG 613 (889)
T ss_pred CCCccceEEEeecchhhhhcC----HHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-----ccchH
Confidence 34578888888875 32221 134788999999999988766789999999999999999999876 34479
Q ss_pred ccCCCCCcEEECCCCCCCchhhHhhhccCCCcEEEcCCCCCC-CCcChhhhhcccccceeec
Q 001439 177 LSRLNNLKVFDLSGNLFNNSILSSLARLSSLRSLLLYDNRLE-GSIDVKEFDSLSNLEELDM 237 (1077)
Q Consensus 177 l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~-~~~~~~~l~~l~~L~~L~L 237 (1077)
+.++..|.+||+..+.....+|.....+++||+|.+...... +......+..+.+|+.+..
T Consensus 614 l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~ 675 (889)
T KOG4658|consen 614 LGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSI 675 (889)
T ss_pred HHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhhee
Confidence 999999999999988766566777777999999988776522 1122233344444444444
No 36
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.92 E-value=2.1e-09 Score=104.36 Aligned_cols=89 Identities=34% Similarity=0.475 Sum_probs=28.3
Q ss_pred hhccCCCCEEeCCCCcCCCccCCcchhhcc-CCCCCcEEECCCCCCCchhhHhhhccCCCcEEEcCCCCCCCCcChhhhh
Q 001439 149 LARLSSLTSLDLSANRLKGSIDIKGPKRLS-RLNNLKVFDLSGNLFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFD 227 (1077)
Q Consensus 149 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~-~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~ 227 (1077)
+.+..++++|+|++|.+... +.++ .+.+|++|++++|.++. .+.+..++.|++|++++|+++ .+......
T Consensus 15 ~~n~~~~~~L~L~~n~I~~I------e~L~~~l~~L~~L~Ls~N~I~~--l~~l~~L~~L~~L~L~~N~I~-~i~~~l~~ 85 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQISTI------ENLGATLDKLEVLDLSNNQITK--LEGLPGLPRLKTLDLSNNRIS-SISEGLDK 85 (175)
T ss_dssp ---------------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS----S-CHHHHH
T ss_pred cccccccccccccccccccc------cchhhhhcCCCEEECCCCCCcc--ccCccChhhhhhcccCCCCCC-ccccchHH
Confidence 44566789999999987642 3565 57889999999998875 346778889999999999987 34422224
Q ss_pred cccccceeecCCCcCCCCc
Q 001439 228 SLSNLEELDMSYNEIDNFE 246 (1077)
Q Consensus 228 ~l~~L~~L~Ls~n~i~~~~ 246 (1077)
.+++|++|++++|++.++.
T Consensus 86 ~lp~L~~L~L~~N~I~~l~ 104 (175)
T PF14580_consen 86 NLPNLQELYLSNNKISDLN 104 (175)
T ss_dssp H-TT--EEE-TTS---SCC
T ss_pred hCCcCCEEECcCCcCCChH
Confidence 6888899999888887644
No 37
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=4.8e-10 Score=112.08 Aligned_cols=230 Identities=23% Similarity=0.225 Sum_probs=141.9
Q ss_pred CCcEEeCCCCCCCchhhHHhhcc--CCCCEEeCCCCcCCCccCCcchhhcc-CCCCCcEEECCCCCCCch-hhHhhhccC
Q 001439 130 NLKMLNLVGNLFNNSILSSLARL--SSLTSLDLSANRLKGSIDIKGPKRLS-RLNNLKVFDLSGNLFNNS-ILSSLARLS 205 (1077)
Q Consensus 130 ~L~~L~Ls~n~l~~~~~~~l~~l--~~L~~L~Ls~n~l~~~~~~~~~~~l~-~l~~L~~L~Ls~n~i~~~-~~~~l~~l~ 205 (1077)
.-+.||+.+-.+. |..++.+ .....+.+....... | .+++.+. .-+.||+||||...++.. +-..++.|.
T Consensus 137 lW~~lDl~~r~i~---p~~l~~l~~rgV~v~Rlar~~~~~--p-rlae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~ 210 (419)
T KOG2120|consen 137 LWQTLDLTGRNIH---PDVLGRLLSRGVIVFRLARSFMDQ--P-RLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCS 210 (419)
T ss_pred ceeeeccCCCccC---hhHHHHHHhCCeEEEEcchhhhcC--c-hhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHH
Confidence 3466777776665 5555554 334444444332221 1 1111121 124588888888777653 333467788
Q ss_pred CCcEEEcCCCCCCCCcChhhhhcccccceeecCCC-cCCCCchhhhccCCcccceeeecccccCCcchhhhhcCCCCCcc
Q 001439 206 SLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYN-EIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLN 284 (1077)
Q Consensus 206 ~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n-~i~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~ 284 (1077)
+|+.|.+.++++...+. ..+++-.+|+.|+++.+ .++.....-.+.+|+.|+.|++++|....... -..+.
T Consensus 211 kLk~lSlEg~~LdD~I~-~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~V-tv~V~------ 282 (419)
T KOG2120|consen 211 KLKNLSLEGLRLDDPIV-NTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKV-TVAVA------ 282 (419)
T ss_pred hhhhccccccccCcHHH-HHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhh-hHHHh------
Confidence 88888888888775443 56777788888888876 34555555556666666666666665543221 00000
Q ss_pred eeccccCcccccccccccCCccCccccEEecchhHhhhhhhhHHHHhccCCCCcEEecccCcCCCCcccccccccCCCCc
Q 001439 285 TLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHL 364 (1077)
Q Consensus 285 ~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~l~~L 364 (1077)
.--++|+.|++++++-.+.....+.+...+|+|.+|||++|-.... .....+.+++.|
T Consensus 283 --------------------hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~--~~~~~~~kf~~L 340 (419)
T KOG2120|consen 283 --------------------HISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKN--DCFQEFFKFNYL 340 (419)
T ss_pred --------------------hhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCc--hHHHHHHhcchh
Confidence 0123567777777765555566666767799999999998754322 333467788999
Q ss_pred cEEEccCCcCCCCchhhh---cCCCCCcEEecCCCc
Q 001439 365 QELHMADNDLRGSLPWCL---ANMTSLRILDVSSNQ 397 (1077)
Q Consensus 365 ~~L~L~~n~l~~~~p~~l---~~l~~L~~L~Ls~n~ 397 (1077)
++|.++.|.. ++|..+ ...+.|++||+.++-
T Consensus 341 ~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 341 QHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred eeeehhhhcC--CChHHeeeeccCcceEEEEecccc
Confidence 9999998854 566554 567889999998874
No 38
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.78 E-value=1.6e-09 Score=108.34 Aligned_cols=132 Identities=30% Similarity=0.424 Sum_probs=100.4
Q ss_pred CCCCCcEEeCCCCCCCchhhHHhhccCCCCEEeCCCCcCCCccCCcchhhccCCCCCcEEECCCCCCCchhhHhhhccCC
Q 001439 127 RLSNLKMLNLVGNLFNNSILSSLARLSSLTSLDLSANRLKGSIDIKGPKRLSRLNNLKVFDLSGNLFNNSILSSLARLSS 206 (1077)
Q Consensus 127 ~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~ 206 (1077)
..+.|+.||||+|.|+ .+.+++.-.+.++.|++|+|.+... ..+..+++|++||||+|.++. +...=.++.+
T Consensus 282 TWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v------~nLa~L~~L~~LDLS~N~Ls~-~~Gwh~KLGN 353 (490)
T KOG1259|consen 282 TWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV------QNLAELPQLQLLDLSGNLLAE-CVGWHLKLGN 353 (490)
T ss_pred hHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee------hhhhhcccceEeecccchhHh-hhhhHhhhcC
Confidence 4567888889888887 6777887788889999998887643 357888888999998887763 3334456778
Q ss_pred CcEEEcCCCCCCCCcChhhhhcccccceeecCCCcCCCCchhhhccCCcccceeeecccccCC
Q 001439 207 LRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRD 269 (1077)
Q Consensus 207 L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~l~~~~~~~ 269 (1077)
.++|.+++|.+. ....+.++-+|..||+++|+|........+++++-|+.+.+.+|.+..
T Consensus 354 IKtL~La~N~iE---~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 354 IKTLKLAQNKIE---TLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred EeeeehhhhhHh---hhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 888888888875 345677788888888888888877766777777777777777766654
No 39
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.78 E-value=5.3e-09 Score=75.74 Aligned_cols=41 Identities=37% Similarity=0.733 Sum_probs=30.7
Q ss_pred HHHHHHHHhchhhcc-CCCCcccCCCCCCCCCCCccccceEec
Q 001439 29 NHERFALLQLKLFFI-DPYNYLLDWVDDEGATDCCQWERVSCN 70 (1077)
Q Consensus 29 ~~~~~all~~k~~~~-~~~~~l~~w~~~~~~~~~c~w~gv~c~ 70 (1077)
++|++||++||+++. +|.+.+.+|+... ..+||.|.||+|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~-~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSGVLSSWNPSS-DSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-CCCTT--TT---S-CCCSTTEEE-
T ss_pred cHHHHHHHHHHHhcccccCcccccCCCcC-CCCCeeeccEEeC
Confidence 689999999999998 4668999998631 3699999999996
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.70 E-value=8.8e-09 Score=82.02 Aligned_cols=59 Identities=39% Similarity=0.569 Sum_probs=31.8
Q ss_pred cCceeeCcCCcCCCCCCccccCCCCCCeEeCCCCcCcccCCCcccCCCCcceEEccccc
Q 001439 905 KIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNN 963 (1077)
Q Consensus 905 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~l~ls~N~ 963 (1077)
+|++|++++|+++...++.|..+++|++||+++|+++...|..|..+++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 34555555555554444555555555555555555555444555555555555555554
No 41
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.68 E-value=1.7e-08 Score=123.21 Aligned_cols=131 Identities=24% Similarity=0.239 Sum_probs=96.3
Q ss_pred cCcCCcEeeCCCCCCCccccchhhhhccCCCCCcEEeCCCCC--CCchhhHHhhccCCCCEEeCCCCcCCCccCCcchhh
Q 001439 99 PFQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNL--FNNSILSSLARLSSLTSLDLSANRLKGSIDIKGPKR 176 (1077)
Q Consensus 99 ~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~--l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~ 176 (1077)
.....|...+-+|.+...... ...+.|+.|-+.+|. +.......|..++.|++|||++|.-.+.+ |..
T Consensus 521 ~~~~~rr~s~~~~~~~~~~~~------~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~L----P~~ 590 (889)
T KOG4658|consen 521 SWNSVRRMSLMNNKIEHIAGS------SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKL----PSS 590 (889)
T ss_pred chhheeEEEEeccchhhccCC------CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcC----ChH
Confidence 335566666666665433321 334578888888885 44334455778999999999987644444 479
Q ss_pred ccCCCCCcEEECCCCCCCchhhHhhhccCCCcEEEcCCCCCCCCcChhhhhcccccceeecCCCc
Q 001439 177 LSRLNNLKVFDLSGNLFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNE 241 (1077)
Q Consensus 177 l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~ 241 (1077)
++++-+||+|++++..+. .+|..++++.+|.+|++..+.....+ ......+++|++|.+....
T Consensus 591 I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~-~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 591 IGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESI-PGILLELQSLRVLRLPRSA 653 (889)
T ss_pred HhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccc-cchhhhcccccEEEeeccc
Confidence 999999999999999988 78999999999999999988765444 3666678899999887664
No 42
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.68 E-value=7.8e-09 Score=82.30 Aligned_cols=60 Identities=48% Similarity=0.646 Sum_probs=56.5
Q ss_pred CCceEECCCCcCCCCCcccccccccCceeeCcCCcCCCCCCccccCCCCCCeEeCCCCcC
Q 001439 881 LLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKL 940 (1077)
Q Consensus 881 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l 940 (1077)
.|+.|++++|+++...+..|.++++|++|++++|+++...|..|.++++|++|++++|+|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 678999999999977778999999999999999999999999999999999999999986
No 43
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.63 E-value=4.6e-09 Score=120.41 Aligned_cols=85 Identities=26% Similarity=0.294 Sum_probs=50.8
Q ss_pred CceEECCCCcCCCCCcccccccccCceeeCcCCcCCCCCCccccCCCCCCeEeCCCCcCccc---CCCc-ccCCCCcceE
Q 001439 882 LSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWK---IPYQ-LVELNTLAVF 957 (1077)
Q Consensus 882 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~---ip~~-l~~l~~L~~l 957 (1077)
|+.+++++|++. .++..+..+..+..|++++|++...- .+.....+..+.++.|.+... .... ....+.+..+
T Consensus 234 L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (414)
T KOG0531|consen 234 LRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNLE--GLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTL 310 (414)
T ss_pred HHHHhcccCccc-cccccccccccccccchhhccccccc--cccccchHHHhccCcchhcchhhhhcccccccccccccc
Confidence 556777777766 23345566677777777777776432 244555666677777766521 1111 4455667777
Q ss_pred EcccccccccCC
Q 001439 958 SVAYNNLSGKIP 969 (1077)
Q Consensus 958 ~ls~N~l~g~~p 969 (1077)
.+.+|......+
T Consensus 311 ~~~~~~~~~~~~ 322 (414)
T KOG0531|consen 311 TLELNPIRKISS 322 (414)
T ss_pred ccccCccccccc
Confidence 777777665444
No 44
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.62 E-value=3.5e-08 Score=97.69 Aligned_cols=94 Identities=21% Similarity=0.282 Sum_probs=50.3
Q ss_pred CcCCcEeeCCCCCCCccccchhhhhccCCCCCcEEeCCCCC---CCchhhH-------HhhccCCCCEEeCCCCcCCCcc
Q 001439 100 FQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNL---FNNSILS-------SLARLSSLTSLDLSANRLKGSI 169 (1077)
Q Consensus 100 l~~L~~L~Ls~n~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~---l~~~~~~-------~l~~l~~L~~L~Ls~n~l~~~~ 169 (1077)
+..+..+|||+|.|.........+.+.+-++|+..+++.-. ..+++++ .+.+|++|+..+||.|.+....
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 55666666666666555444444556666667776666532 1223333 2344556666666666555444
Q ss_pred CCcchhhccCCCCCcEEECCCCCC
Q 001439 170 DIKGPKRLSRLNNLKVFDLSGNLF 193 (1077)
Q Consensus 170 ~~~~~~~l~~l~~L~~L~Ls~n~i 193 (1077)
|..+-..|++-+.|.+|.+++|.+
T Consensus 109 ~e~L~d~is~~t~l~HL~l~NnGl 132 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNNGL 132 (388)
T ss_pred chHHHHHHhcCCCceeEEeecCCC
Confidence 433334445555555555555543
No 45
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=6.4e-09 Score=104.20 Aligned_cols=188 Identities=16% Similarity=0.080 Sum_probs=121.4
Q ss_pred ccceeecCCCcCCCCchhhhccCCcccceeeecccccCCcchhhhhcCCCCCcceeccccCcccccccccccCCccCccc
Q 001439 231 NLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFPHFKSL 310 (1077)
Q Consensus 231 ~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L 310 (1077)
.||++||+...++.-.+...++.|.+|+.|.+.++... +.+...+.+..+|+.|+++.++..+..... .-+.+|+.|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~Ld--D~I~~~iAkN~~L~~lnlsm~sG~t~n~~~-ll~~scs~L 262 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLD--DPIVNTIAKNSNLVRLNLSMCSGFTENALQ-LLLSSCSRL 262 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccC--cHHHHHHhccccceeeccccccccchhHHH-HHHHhhhhH
Confidence 46666776666666566666666777777766666554 334456667778888888877654432211 235678888
Q ss_pred cEEecchhHhhhhhhhHHHHhccCCCCcEEecccCcCCCCcccccccccCCCCccEEEccCCcC-CCCchhhhcCCCCCc
Q 001439 311 KELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDL-RGSLPWCLANMTSLR 389 (1077)
Q Consensus 311 ~~L~L~~n~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l-~~~~p~~l~~l~~L~ 389 (1077)
.+|++++|... ...+-..+..--++|+.|+++++.-.-....+..-...+++|.+|||++|.- +......|.+++.|+
T Consensus 263 ~~LNlsWc~l~-~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~ 341 (419)
T KOG2120|consen 263 DELNLSWCFLF-TEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQ 341 (419)
T ss_pred hhcCchHhhcc-chhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchhe
Confidence 88888888432 1222233333357899999998753211111111235799999999999853 434445677899999
Q ss_pred EEecCCCccccccCCccccCCCCcceeecCCCe
Q 001439 390 ILDVSSNQLIGSISSSPLIHLTSIEDLILSDNH 422 (1077)
Q Consensus 390 ~L~Ls~n~l~~~i~~~~l~~l~~L~~L~L~~n~ 422 (1077)
+|.++.|.....-....+...++|.+|++.++-
T Consensus 342 ~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 342 HLSLSRCYDIIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred eeehhhhcCCChHHeeeeccCcceEEEEecccc
Confidence 999999975421112345677899999998873
No 46
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.61 E-value=6.2e-09 Score=119.35 Aligned_cols=132 Identities=39% Similarity=0.528 Sum_probs=90.7
Q ss_pred cCcCCcEeeCCCCCCCccccchhhhhccCCCCCcEEeCCCCCCCchhhHHhhccCCCCEEeCCCCcCCCccCCcchhhcc
Q 001439 99 PFQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLARLSSLTSLDLSANRLKGSIDIKGPKRLS 178 (1077)
Q Consensus 99 ~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~ 178 (1077)
.+..++.++++.|.+.... ..+..+++|.+|++.+|.+.. +...+..+++|++|++++|.|... ..+.
T Consensus 70 ~l~~l~~l~l~~n~i~~~~-----~~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i------~~l~ 137 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAKIL-----NHLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKL------EGLS 137 (414)
T ss_pred HhHhHHhhccchhhhhhhh-----cccccccceeeeeccccchhh-cccchhhhhcchheeccccccccc------cchh
Confidence 4566666777777765422 226777888888888888763 333367788888888888887654 3567
Q ss_pred CCCCCcEEECCCCCCCchhhHhhhccCCCcEEEcCCCCCCCCcCh-hhhhcccccceeecCCCcCCCCc
Q 001439 179 RLNNLKVFDLSGNLFNNSILSSLARLSSLRSLLLYDNRLEGSIDV-KEFDSLSNLEELDMSYNEIDNFE 246 (1077)
Q Consensus 179 ~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~-~~l~~l~~L~~L~Ls~n~i~~~~ 246 (1077)
.++.|+.|++++|.+.. ...+..++.|+.+++++|++. .+.. . ...+.+++.+++.+|.+..+.
T Consensus 138 ~l~~L~~L~l~~N~i~~--~~~~~~l~~L~~l~l~~n~i~-~ie~~~-~~~~~~l~~l~l~~n~i~~i~ 202 (414)
T KOG0531|consen 138 TLTLLKELNLSGNLISD--ISGLESLKSLKLLDLSYNRIV-DIENDE-LSELISLEELDLGGNSIREIE 202 (414)
T ss_pred hccchhhheeccCcchh--ccCCccchhhhcccCCcchhh-hhhhhh-hhhccchHHHhccCCchhccc
Confidence 77778888888888764 345566778888888888876 2221 1 577778888888888766543
No 47
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.43 E-value=1.2e-07 Score=95.14 Aligned_cols=67 Identities=21% Similarity=0.303 Sum_probs=45.2
Q ss_pred CCCCcEEecccCcCCCCcccccccccCCCCccEEEccCCcCCCCc-hhhhcCCCCCcEEecCCCcccccc
Q 001439 334 MPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSL-PWCLANMTSLRILDVSSNQLIGSI 402 (1077)
Q Consensus 334 l~~L~~L~L~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~Ls~n~l~~~i 402 (1077)
+|++..+-+..|.+...... ++..+++.+-.|+|+.+++...- -..+.++++|+-|.++++.+.+.+
T Consensus 198 Fpnv~sv~v~e~PlK~~s~e--k~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l 265 (418)
T KOG2982|consen 198 FPNVNSVFVCEGPLKTESSE--KGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPL 265 (418)
T ss_pred cccchheeeecCcccchhhc--ccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccc
Confidence 67888887777766443322 25566777778888888776432 245677888888888888776543
No 48
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.42 E-value=1.3e-08 Score=113.65 Aligned_cols=162 Identities=27% Similarity=0.291 Sum_probs=113.1
Q ss_pred cccCcCCcEeeCCCCCCCccccchh---------------------hhhccC------CCCCcEEeCCCCCCCchhhHHh
Q 001439 97 FTPFQQLESLDLRDNDIAGCVENEG---------------------LERLSR------LSNLKMLNLVGNLFNNSILSSL 149 (1077)
Q Consensus 97 ~~~l~~L~~L~Ls~n~~~~~~~~~~---------------------~~~l~~------l~~L~~L~Ls~n~l~~~~~~~l 149 (1077)
+..|+.||+|.|+++++.....-.+ ....+. --.|...+.++|.+. .+.+++
T Consensus 105 ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~-~mD~SL 183 (1096)
T KOG1859|consen 105 IFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLV-LMDESL 183 (1096)
T ss_pred eccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHH-hHHHHH
Confidence 3578899999999888753211000 000001 123455566666665 556777
Q ss_pred hccCCCCEEeCCCCcCCCccCCcchhhccCCCCCcEEECCCCCCCchhhHhhhccCCCcEEEcCCCCCCCCcChhhhhcc
Q 001439 150 ARLSSLTSLDLSANRLKGSIDIKGPKRLSRLNNLKVFDLSGNLFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSL 229 (1077)
Q Consensus 150 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l 229 (1077)
.-+++|++|||++|++... ..+..|++|++|||++|.+....--....+. |+.|.+++|.++ ....+.++
T Consensus 184 qll~ale~LnLshNk~~~v------~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~---tL~gie~L 253 (1096)
T KOG1859|consen 184 QLLPALESLNLSHNKFTKV------DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALT---TLRGIENL 253 (1096)
T ss_pred HHHHHhhhhccchhhhhhh------HHHHhcccccccccccchhccccccchhhhh-heeeeecccHHH---hhhhHHhh
Confidence 7788999999999988753 4788899999999999988743222334444 889999999876 34678888
Q ss_pred cccceeecCCCcCCCCchhhhccCCcccceeeecccccCC
Q 001439 230 SNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRD 269 (1077)
Q Consensus 230 ~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~l~~~~~~~ 269 (1077)
++|+.||+++|-+.+..-...+..+..|+.|.+.+|.+.-
T Consensus 254 ksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c 293 (1096)
T KOG1859|consen 254 KSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCC 293 (1096)
T ss_pred hhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence 8999999999988877777777777788888887776653
No 49
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.37 E-value=4.1e-08 Score=103.45 Aligned_cols=286 Identities=19% Similarity=0.171 Sum_probs=145.5
Q ss_pred CCcEeeCCCCCCCccccchhhhhccCCCCCcEEeCCCCC-CCchhhHHhhc-cCCCCEEeCCCCcCCCccCCcchh-hcc
Q 001439 102 QLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNL-FNNSILSSLAR-LSSLTSLDLSANRLKGSIDIKGPK-RLS 178 (1077)
Q Consensus 102 ~L~~L~Ls~n~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~-l~~~~~~~l~~-l~~L~~L~Ls~n~l~~~~~~~~~~-~l~ 178 (1077)
.|+.|.++++.=.+..+-. ....+++++.+|++.++. +++..-.++++ +++|++|++..|..-... ..+ -..
T Consensus 139 ~lk~LSlrG~r~v~~sslr--t~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~---~Lk~la~ 213 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLR--TFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDV---SLKYLAE 213 (483)
T ss_pred ccccccccccccCCcchhh--HHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHH---HHHHHHH
Confidence 6777778776533322211 123567777777777774 44444444443 788888888775422111 112 234
Q ss_pred CCCCCcEEECCCCC-CCchhhHh-hhccCCCcEEEcCCCCCCCCcChhhhhc----ccccceeecCCC-cCCCCchhhhc
Q 001439 179 RLNNLKVFDLSGNL-FNNSILSS-LARLSSLRSLLLYDNRLEGSIDVKEFDS----LSNLEELDMSYN-EIDNFEVPQAC 251 (1077)
Q Consensus 179 ~l~~L~~L~Ls~n~-i~~~~~~~-l~~l~~L~~L~L~~n~l~~~~~~~~l~~----l~~L~~L~Ls~n-~i~~~~~~~~~ 251 (1077)
.|++|++|+++.|. +++..... ..++..++.+.+.+|. ..+.+.+.. +..+.++++..+ .+++..+....
T Consensus 214 gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~---e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~ 290 (483)
T KOG4341|consen 214 GCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCL---ELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIA 290 (483)
T ss_pred hhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccc---cccHHHHHHHhccChHhhccchhhhccccchHHHHHh
Confidence 57888888888773 44422222 3445566666666554 233333332 233555554443 45666666666
Q ss_pred cCCcccceeeecccccCCcchhhhhcCCCCCcceeccccCcccccccccccCCccCccccEEecchhHhhhhhhhHHHHh
Q 001439 252 SGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIALNTSFLQIIG 331 (1077)
Q Consensus 252 ~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~l~ 331 (1077)
..+..|+.+..+++.......+..--.+.++|+.+.+.+++........ .--.+++.|+.+++.++.....+.+.+ +.
T Consensus 291 ~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft-~l~rn~~~Le~l~~e~~~~~~d~tL~s-ls 368 (483)
T KOG4341|consen 291 CGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFT-MLGRNCPHLERLDLEECGLITDGTLAS-LS 368 (483)
T ss_pred hhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhh-hhhcCChhhhhhcccccceehhhhHhh-hc
Confidence 6777777777777666444444444456677777777777643221110 011245566666666653333332222 22
Q ss_pred ccCCCCcEEecccCcCCCCc--ccccccccCCCCccEEEccCCcCCC-CchhhhcCCCCCcEEecCCCc
Q 001439 332 ESMPSIQYLSLSNSSVSNNS--RTLDQGLCPLVHLQELHMADNDLRG-SLPWCLANMTSLRILDVSSNQ 397 (1077)
Q Consensus 332 ~~l~~L~~L~L~~~~~~~~~--~~~~~~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~Ls~n~ 397 (1077)
..++.|+++.+++|...... ..+...-+....|+.+.|++++.+. ..-..+..+++|+.+++-+++
T Consensus 369 ~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 369 RNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred cCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence 23566666666655432111 1111122334455555555554331 111223344445554444443
No 50
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.37 E-value=8.5e-08 Score=101.16 Aligned_cols=290 Identities=16% Similarity=0.091 Sum_probs=192.0
Q ss_pred CCCcEEeCCCCCCCc--hhhHHhhccCCCCEEeCCCCcCCCccCCcchhhc-cCCCCCcEEECCCC-CCCchhhH-hhhc
Q 001439 129 SNLKMLNLVGNLFNN--SILSSLARLSSLTSLDLSANRLKGSIDIKGPKRL-SRLNNLKVFDLSGN-LFNNSILS-SLAR 203 (1077)
Q Consensus 129 ~~L~~L~Ls~n~l~~--~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l-~~l~~L~~L~Ls~n-~i~~~~~~-~l~~ 203 (1077)
..||.|.++++.-.+ .+-..-.+++++++|++.+|...... ....+ ..|++|++|++..| .++..... -...
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~---s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~g 214 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDS---SLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEG 214 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHH---HHHHHHHhcchhhhhhhcccchhHHHHHHHHHHh
Confidence 468888898886332 23334456899999999998733221 11233 56899999999996 46655555 3346
Q ss_pred cCCCcEEEcCCCCC-CCCcChhhhhcccccceeecCCCcCCCC-chhhhccCCcccceeeecccccCCcchhhhhcCCCC
Q 001439 204 LSSLRSLLLYDNRL-EGSIDVKEFDSLSNLEELDMSYNEIDNF-EVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFP 281 (1077)
Q Consensus 204 l~~L~~L~L~~n~l-~~~~~~~~l~~l~~L~~L~Ls~n~i~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~ 281 (1077)
+++|++|++++|.- ++.--.....+++.++.+.+.++.-... .+...-..+..+.++++..|...+...+...-..+.
T Consensus 215 C~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~ 294 (483)
T KOG4341|consen 215 CRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCH 294 (483)
T ss_pred hhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhh
Confidence 89999999999863 2211113345677788888887632222 222233445566777777776655666666667788
Q ss_pred CcceeccccCcccccccccccCCccCccccEEecchhHhhhhhhhHHHHhccCCCCcEEecccCcCCCCcccccccccCC
Q 001439 282 SLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPL 361 (1077)
Q Consensus 282 ~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~l 361 (1077)
.|+.|+.+++......... .--.++.+|+.+.+..++ .+...-...++..++.|+.+++..+...... .+...-.++
T Consensus 295 ~lq~l~~s~~t~~~d~~l~-aLg~~~~~L~~l~l~~c~-~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~-tL~sls~~C 371 (483)
T KOG4341|consen 295 ALQVLCYSSCTDITDEVLW-ALGQHCHNLQVLELSGCQ-QFSDRGFTMLGRNCPHLERLDLEECGLITDG-TLASLSRNC 371 (483)
T ss_pred HhhhhcccCCCCCchHHHH-HHhcCCCceEEEeccccc-hhhhhhhhhhhcCChhhhhhcccccceehhh-hHhhhccCC
Confidence 9999999887653321111 122456899999999986 3556666777777899999999988653222 222234568
Q ss_pred CCccEEEccCCcCCCCc-----hhhhcCCCCCcEEecCCCccccccCCccccCCCCcceeecCCCeee
Q 001439 362 VHLQELHMADNDLRGSL-----PWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQ 424 (1077)
Q Consensus 362 ~~L~~L~L~~n~l~~~~-----p~~l~~l~~L~~L~Ls~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~ 424 (1077)
+.|+++.+++|...... ...-..+..|+.+.+++++.+.+-....+..+++|+.+++-+++-.
T Consensus 372 ~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~v 439 (483)
T KOG4341|consen 372 PRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDV 439 (483)
T ss_pred chhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhh
Confidence 99999999988653221 1222356789999999998776554567778899999999888544
No 51
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.10 E-value=1.9e-07 Score=104.75 Aligned_cols=129 Identities=29% Similarity=0.326 Sum_probs=104.1
Q ss_pred cCCcEeeCCCCCCCccccchhhhhccCCCCCcEEeCCCCCCCchhhHHhhccCCCCEEeCCCCcCCCccCCcchhhccCC
Q 001439 101 QQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLARLSSLTSLDLSANRLKGSIDIKGPKRLSRL 180 (1077)
Q Consensus 101 ~~L~~L~Ls~n~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l 180 (1077)
-.|.+.+.++|.+.... +++.-+++|+.|||++|+++. ...+..|++|.+|||++|.++- +|. -....|
T Consensus 164 n~L~~a~fsyN~L~~mD-----~SLqll~ale~LnLshNk~~~--v~~Lr~l~~LkhLDlsyN~L~~-vp~---l~~~gc 232 (1096)
T KOG1859|consen 164 NKLATASFSYNRLVLMD-----ESLQLLPALESLNLSHNKFTK--VDNLRRLPKLKHLDLSYNCLRH-VPQ---LSMVGC 232 (1096)
T ss_pred hhHhhhhcchhhHHhHH-----HHHHHHHHhhhhccchhhhhh--hHHHHhcccccccccccchhcc-ccc---cchhhh
Confidence 35677778888776433 346778999999999999974 3488899999999999999874 342 122334
Q ss_pred CCCcEEECCCCCCCchhhHhhhccCCCcEEEcCCCCCCCCcChhhhhcccccceeecCCCcCC
Q 001439 181 NNLKVFDLSGNLFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEID 243 (1077)
Q Consensus 181 ~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~i~ 243 (1077)
. |+.|.+++|.++. ...+.++.+|+.||+++|-+.+.-....+..+..|+.|+|.+|.+-
T Consensus 233 ~-L~~L~lrnN~l~t--L~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 233 K-LQLLNLRNNALTT--LRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred h-heeeeecccHHHh--hhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 4 9999999998865 5678999999999999999988777788899999999999999653
No 52
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.09 E-value=1.4e-07 Score=83.75 Aligned_cols=57 Identities=25% Similarity=0.446 Sum_probs=26.5
Q ss_pred ceEECCCCcCCCCCcccccccccCceeeCcCCcCCCCCCccccCCCCCCeEeCCCCcCc
Q 001439 883 SGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLS 941 (1077)
Q Consensus 883 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~ 941 (1077)
+.|+|++|.++ .+|.++..++.|+.||++.|.+. ..|..|..|.+|-.||..+|.+.
T Consensus 80 t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 80 TTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA 136 (177)
T ss_pred hhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc
Confidence 34444444444 34444444444555555444444 33344444444444444444444
No 53
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.06 E-value=1.8e-06 Score=87.09 Aligned_cols=65 Identities=17% Similarity=0.133 Sum_probs=36.2
Q ss_pred CCCCcEEecCCCccccccCCccccCCCCcceeecCCCeeeeecCcccccCCCCccEEecCCCcce
Q 001439 385 MTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEIN 449 (1077)
Q Consensus 385 l~~L~~L~Ls~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n~l~ 449 (1077)
++++..+-+..|.+...-....+..++.+--|+|+.+++..-...+++..++.|..+.++.+.+.
T Consensus 198 Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~ 262 (418)
T KOG2982|consen 198 FPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLS 262 (418)
T ss_pred cccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccc
Confidence 34555555555555433333444555555566666666555555555666666666666666554
No 54
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.05 E-value=1.1e-06 Score=87.41 Aligned_cols=238 Identities=20% Similarity=0.205 Sum_probs=129.2
Q ss_pred hhccCCCCCcEEeCCCCCCCchhhHH----hhccCCCCEEeCCCCcCCCccCC-------cchhhccCCCCCcEEECCCC
Q 001439 123 ERLSRLSNLKMLNLVGNLFNNSILSS----LARLSSLTSLDLSANRLKGSIDI-------KGPKRLSRLNNLKVFDLSGN 191 (1077)
Q Consensus 123 ~~l~~l~~L~~L~Ls~n~l~~~~~~~----l~~l~~L~~L~Ls~n~l~~~~~~-------~~~~~l~~l~~L~~L~Ls~n 191 (1077)
+.+..+..++.++||+|.|..+-... |.+-.+|+..+++.-. +|..-. .+.+.+.+|++|+..+||.|
T Consensus 24 eel~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~f-tgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDN 102 (388)
T COG5238 24 EELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAF-TGRDKDELYSNLVMLLKALLKCPRLQKVDLSDN 102 (388)
T ss_pred HHHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhh-hcccHHHHHHHHHHHHHHHhcCCcceeeecccc
Confidence 34566888999999999987654444 4455788888887643 221111 11245677888888888888
Q ss_pred CCCchhhHh----hhccCCCcEEEcCCCCCCCCcChhhhhcccccceeecCCCcCCCCchhhhccCCcccceeeeccccc
Q 001439 192 LFNNSILSS----LARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGI 267 (1077)
Q Consensus 192 ~i~~~~~~~----l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~l~~~~~ 267 (1077)
-+....|.. +++-+.|++|.+++|.+. .+....+++ ++..+
T Consensus 103 Afg~~~~e~L~d~is~~t~l~HL~l~NnGlG-p~aG~rigk---------------------al~~l------------- 147 (388)
T COG5238 103 AFGSEFPEELGDLISSSTDLVHLKLNNNGLG-PIAGGRIGK---------------------ALFHL------------- 147 (388)
T ss_pred ccCcccchHHHHHHhcCCCceeEEeecCCCC-ccchhHHHH---------------------HHHHH-------------
Confidence 776655544 344567777777777654 222111110 00000
Q ss_pred CCcchhhhhcCCCCCcceeccccCccccccccccc-CCccCccccEEecchhHhhhhhh---hHHHHhccCCCCcEEecc
Q 001439 268 RDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQ-GFPHFKSLKELYMDDARIALNTS---FLQIIGESMPSIQYLSLS 343 (1077)
Q Consensus 268 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~-~l~~l~~L~~L~L~~n~~~~~~~---~~~~l~~~l~~L~~L~L~ 343 (1077)
.......+.|.|++.....|+...++..... .+....+|+.+.+..|.|.-.|. ....+.. +.+|+.|++.
T Consensus 148 ----a~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y-~~~LevLDlq 222 (388)
T COG5238 148 ----AYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFY-SHSLEVLDLQ 222 (388)
T ss_pred ----HHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHH-hCcceeeecc
Confidence 0001123334444444444444333222111 12223456666666664322211 1112222 6888888988
Q ss_pred cCcCCCCccc-ccccccCCCCccEEEccCCcCCCCchhhh------cCCCCCcEEecCCCccccc
Q 001439 344 NSSVSNNSRT-LDQGLCPLVHLQELHMADNDLRGSLPWCL------ANMTSLRILDVSSNQLIGS 401 (1077)
Q Consensus 344 ~~~~~~~~~~-~~~~l~~l~~L~~L~L~~n~l~~~~p~~l------~~l~~L~~L~Ls~n~l~~~ 401 (1077)
+|.++..... +...++..+.|++|.+.+|-++.....++ ...++|..|-..+|...+.
T Consensus 223 DNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~ 287 (388)
T COG5238 223 DNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGG 287 (388)
T ss_pred ccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCc
Confidence 8887654322 22245666778888888887765443332 1356777777777765543
No 55
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.81 E-value=4.7e-05 Score=83.36 Aligned_cols=54 Identities=13% Similarity=0.108 Sum_probs=26.1
Q ss_pred cccccEeccccccCCCCCCccccCCCCCCEEEccCccccccCchhccCCCCCCEEECcCC
Q 001439 754 CLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNN 813 (1077)
Q Consensus 754 ~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N 813 (1077)
+..++.|++++|.++ .+|. -.++|+.|.++++.-...+|..+ .++|+.|++++|
T Consensus 51 ~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~C 104 (426)
T PRK15386 51 ARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHC 104 (426)
T ss_pred hcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCc
Confidence 455555666555554 3331 12345566665533323444433 235566666655
No 56
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.75 E-value=2.3e-05 Score=93.59 Aligned_cols=107 Identities=27% Similarity=0.400 Sum_probs=51.0
Q ss_pred CCCcEEeCCCCCC-CchhhHHhhc-cCCCCEEeCCCCcCCCccCCcchhhccCCCCCcEEECCCCCCCchhhHhhhccCC
Q 001439 129 SNLKMLNLVGNLF-NNSILSSLAR-LSSLTSLDLSANRLKGSIDIKGPKRLSRLNNLKVFDLSGNLFNNSILSSLARLSS 206 (1077)
Q Consensus 129 ~~L~~L~Ls~n~l-~~~~~~~l~~-l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~ 206 (1077)
.+|++||+++... ....|..++. ||+|+.|.+++-.+... .......++++|..||+|+++++.. .+++++++
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~---dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~Lkn 196 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDND---DFSQLCASFPNLRSLDISGTNISNL--SGISRLKN 196 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecch---hHHHHhhccCccceeecCCCCccCc--HHHhcccc
Confidence 4555555555432 2334444444 45555555555443321 0012234455555555555555432 44555555
Q ss_pred CcEEEcCCCCCCCCcChhhhhcccccceeecCCC
Q 001439 207 LRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYN 240 (1077)
Q Consensus 207 L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n 240 (1077)
|+.|.+.+-.+...-....+-+|++|+.||+|..
T Consensus 197 Lq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~ 230 (699)
T KOG3665|consen 197 LQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRD 230 (699)
T ss_pred HHHHhccCCCCCchhhHHHHhcccCCCeeecccc
Confidence 5555555544443333344444555555555544
No 57
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.74 E-value=2.6e-05 Score=93.28 Aligned_cols=154 Identities=23% Similarity=0.260 Sum_probs=106.7
Q ss_pred cCCcEeeCCCCCCCccccchhhhhccCCCCCcEEeCCCCCCCc-hhhHHhhccCCCCEEeCCCCcCCCccCCcchhhccC
Q 001439 101 QQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNN-SILSSLARLSSLTSLDLSANRLKGSIDIKGPKRLSR 179 (1077)
Q Consensus 101 ~~L~~L~Ls~n~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~ 179 (1077)
.+|++||+++......... .+.-..|++|+.|.+++-.+.. .......++++|+.||+|+++++.. ..+++
T Consensus 122 ~nL~~LdI~G~~~~s~~W~--~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl------~GIS~ 193 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWP--KKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL------SGISR 193 (699)
T ss_pred HhhhhcCccccchhhccHH--HHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc------HHHhc
Confidence 5789999988654322111 1112458999999999877743 3344455689999999999988743 58899
Q ss_pred CCCCcEEECCCCCCCc-hhhHhhhccCCCcEEEcCCCCCCCCc--C---hhhhhcccccceeecCCCcCCCCchhhhccC
Q 001439 180 LNNLKVFDLSGNLFNN-SILSSLARLSSLRSLLLYDNRLEGSI--D---VKEFDSLSNLEELDMSYNEIDNFEVPQACSG 253 (1077)
Q Consensus 180 l~~L~~L~Ls~n~i~~-~~~~~l~~l~~L~~L~L~~n~l~~~~--~---~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~ 253 (1077)
+++|++|.+.+-.+.. .....+.+|++|+.||+|.......- . .+.-..+|+|+.||.|++.+...-+...+..
T Consensus 194 LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~s 273 (699)
T KOG3665|consen 194 LKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNS 273 (699)
T ss_pred cccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHh
Confidence 9999999988877664 44567888999999999987754221 1 0112347899999999887776555555556
Q ss_pred Ccccceeee
Q 001439 254 LRKLSYLHL 262 (1077)
Q Consensus 254 l~~L~~L~l 262 (1077)
.++|+.+..
T Consensus 274 H~~L~~i~~ 282 (699)
T KOG3665|consen 274 HPNLQQIAA 282 (699)
T ss_pred CccHhhhhh
Confidence 666665543
No 58
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.71 E-value=2.3e-05 Score=56.78 Aligned_cols=36 Identities=42% Similarity=0.729 Sum_probs=16.3
Q ss_pred cCceeeCcCCcCCCCCCccccCCCCCCeEeCCCCcCc
Q 001439 905 KIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLS 941 (1077)
Q Consensus 905 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~ 941 (1077)
+|++|++++|+|+ .+|..+++|++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 3444555555554 23334455555555555555444
No 59
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.65 E-value=3.9e-06 Score=74.79 Aligned_cols=85 Identities=24% Similarity=0.348 Sum_probs=52.0
Q ss_pred CCccEEEcCCCcccccCCchhhccCCCCcEEEcccCcccccCCccCCCCCCCCEEEccCCcCCCCcchHhhhcCCcCcEE
Q 001439 537 KQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSL 616 (1077)
Q Consensus 537 ~~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L 616 (1077)
..|+..++++|.+. .+|..+...++.++.|++++|.++ .+|..+..++.|+.|+++.|.+. ..|..++. +.++..|
T Consensus 53 ~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~-L~~l~~L 128 (177)
T KOG4579|consen 53 YELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAP-LIKLDML 128 (177)
T ss_pred ceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHH-HHhHHHh
Confidence 44556666666665 566655555566666777766666 45555666666667777666665 55555543 5555555
Q ss_pred EcccccCCC
Q 001439 617 ALSNNNLEG 625 (1077)
Q Consensus 617 ~L~~n~l~~ 625 (1077)
+..+|.+..
T Consensus 129 ds~~na~~e 137 (177)
T KOG4579|consen 129 DSPENARAE 137 (177)
T ss_pred cCCCCcccc
Confidence 555555443
No 60
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.57 E-value=8.6e-05 Score=71.31 Aligned_cols=87 Identities=24% Similarity=0.320 Sum_probs=64.9
Q ss_pred cCCCCEEeCCCCcCCCccCCcchhhccCCCCCcEEECCCCCCCchhhHhhhccCCCcEEEcCCCCCCCCcChhhhhcccc
Q 001439 152 LSSLTSLDLSANRLKGSIDIKGPKRLSRLNNLKVFDLSGNLFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSN 231 (1077)
Q Consensus 152 l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~ 231 (1077)
+.+...+||++|.+... ..+..++.|.+|.|..|+|+...|.--.-+++|+.|.+.+|.+....+...+..+++
T Consensus 41 ~d~~d~iDLtdNdl~~l------~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~ 114 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRKL------DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPK 114 (233)
T ss_pred ccccceecccccchhhc------ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCc
Confidence 45677888888887542 367788888888898888887666655566788888888888875555666777778
Q ss_pred cceeecCCCcCCC
Q 001439 232 LEELDMSYNEIDN 244 (1077)
Q Consensus 232 L~~L~Ls~n~i~~ 244 (1077)
|++|.+-+|.++.
T Consensus 115 L~~Ltll~Npv~~ 127 (233)
T KOG1644|consen 115 LEYLTLLGNPVEH 127 (233)
T ss_pred cceeeecCCchhc
Confidence 8888877776654
No 61
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.53 E-value=5.6e-05 Score=54.76 Aligned_cols=38 Identities=34% Similarity=0.611 Sum_probs=32.9
Q ss_pred CCCCeEeCCCCcCcccCCCcccCCCCcceEEcccccccc
Q 001439 928 RNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSG 966 (1077)
Q Consensus 928 ~~L~~LdLs~N~l~~~ip~~l~~l~~L~~l~ls~N~l~g 966 (1077)
++|++|++++|+|+ .+|..+.++++|++|++++|+++.
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCC
Confidence 57999999999999 678789999999999999999883
No 62
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.45 E-value=0.0005 Score=75.50 Aligned_cols=32 Identities=28% Similarity=0.266 Sum_probs=15.1
Q ss_pred CCCcEEEcccCcCCCCCCccccCCCCccEEECCCC
Q 001439 659 SSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKN 693 (1077)
Q Consensus 659 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n 693 (1077)
++|++|++++|... ..|..+. .+|+.|+++.+
T Consensus 156 sSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 156 PSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIE 187 (426)
T ss_pred CcccEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence 45566666555543 2333222 34555555544
No 63
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.44 E-value=0.00032 Score=66.02 Aligned_cols=87 Identities=24% Similarity=0.219 Sum_probs=35.5
Q ss_pred CchhhccCCCCcEEEcccCcccccCCccCCCCCCCCEEEccCCcCCCCcchHhhhcCCcCcEEEcccccCCCcccccccC
Q 001439 554 PLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFN 633 (1077)
Q Consensus 554 ~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 633 (1077)
+...+..+++|+.+.+.. .+..+....|.++++|+.+.+.++ +. .++...|.++++++.+.+.+ .+.......|..
T Consensus 4 ~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~ 79 (129)
T PF13306_consen 4 GNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPN-NLKSIGDNAFSN 79 (129)
T ss_dssp -TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT
T ss_pred CHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-cc-ccceeeeecccccccccccc-cccccccccccc
Confidence 334444455566666553 344444555666656666666553 43 55555555555555555543 333223333334
Q ss_pred CCccCeeeccC
Q 001439 634 LTNLIWLQLEG 644 (1077)
Q Consensus 634 l~~L~~L~L~~ 644 (1077)
+++|+.+++..
T Consensus 80 ~~~l~~i~~~~ 90 (129)
T PF13306_consen 80 CTNLKNIDIPS 90 (129)
T ss_dssp -TTECEEEETT
T ss_pred cccccccccCc
Confidence 44444444433
No 64
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.37 E-value=0.00037 Score=65.58 Aligned_cols=124 Identities=21% Similarity=0.257 Sum_probs=64.8
Q ss_pred CccCCCCCCCCEEEccCCcCCCCcchHhhhcCCcCcEEEcccccCCCcccccccCCCccCeeeccCccccccCCccccCC
Q 001439 579 PSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKC 658 (1077)
Q Consensus 579 p~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l 658 (1077)
...|.++++|+.+.+.. .+. .++...|.++.+|+.+.+.++ +.......|.++++++.+.+.+ .+.......|..+
T Consensus 5 ~~~F~~~~~l~~i~~~~-~~~-~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~ 80 (129)
T PF13306_consen 5 NNAFYNCSNLESITFPN-TIK-KIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNC 80 (129)
T ss_dssp TTTTTT-TT--EEEETS-T---EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-
T ss_pred HHHHhCCCCCCEEEECC-Cee-EeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccc
Confidence 45678888888888875 565 788888888888888888774 6666666677777788888765 4443445567777
Q ss_pred CCCcEEEcccCcCCCCCCccccCCCCccEEECCCCcccCCCCccccCCCCC
Q 001439 659 SSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRIL 709 (1077)
Q Consensus 659 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 709 (1077)
++|+.+++..+ +.......|.++ .++.+.+.. .+.......|.++++|
T Consensus 81 ~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 81 TNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred ccccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 77877777654 443445556665 777777665 4443445566666555
No 65
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.25 E-value=0.00045 Score=66.48 Aligned_cols=109 Identities=18% Similarity=0.218 Sum_probs=79.0
Q ss_pred CCCCcEEecccCcCCCCcccccccccCCCCccEEEccCCcCCCCchhhhcCCCCCcEEecCCCccccccCCccccCCCCc
Q 001439 334 MPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSI 413 (1077)
Q Consensus 334 l~~L~~L~L~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~l~~l~~L 413 (1077)
......++|++|.+.... .+..+++|..|.+.+|.|+.+-|.--.-+++|..|.+.+|.+..--....+..+++|
T Consensus 41 ~d~~d~iDLtdNdl~~l~-----~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L 115 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRKLD-----NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKL 115 (233)
T ss_pred ccccceecccccchhhcc-----cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCcc
Confidence 456677777777664332 456678888888988888877666555677888899998887654445677888899
Q ss_pred ceeecCCCeeeeecC--cccccCCCCccEEecCCCc
Q 001439 414 EDLILSDNHFQIPIS--LEPLFNHSRLKIFDAENNE 447 (1077)
Q Consensus 414 ~~L~L~~n~l~~~~~--~~~~~~l~~L~~l~l~~n~ 447 (1077)
++|.+-+|+.+.... ...+..+++|+++|++.-.
T Consensus 116 ~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 116 EYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred ceeeecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence 999998887763322 2245678889988887654
No 66
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.17 E-value=0.00028 Score=83.78 Aligned_cols=181 Identities=25% Similarity=0.201 Sum_probs=88.4
Q ss_pred cCCCCEEeCCCCcCCCccCCcchhhccCCCCCcEEECCCC-CCCch----hhHhhhccCCCcEEEcCCCCCCCCcChhhh
Q 001439 152 LSSLTSLDLSANRLKGSIDIKGPKRLSRLNNLKVFDLSGN-LFNNS----ILSSLARLSSLRSLLLYDNRLEGSIDVKEF 226 (1077)
Q Consensus 152 l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n-~i~~~----~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l 226 (1077)
++.|+.|.+..+.-.... ........++.|+.|+++++ ..... .......+.+|+.|+++.+...+......+
T Consensus 187 ~~~L~~l~l~~~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l 264 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDD--SLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSAL 264 (482)
T ss_pred CchhhHhhhcccccCChh--hHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHH
Confidence 455555555555321110 01123445566666666552 11110 112233445666666666652223333333
Q ss_pred hc-ccccceeecCCCc-CCCCchhhhccCCcccceeeecccccCCcchhhhhcCCCCCcceeccccCcccccccccccCC
Q 001439 227 DS-LSNLEELDMSYNE-IDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGF 304 (1077)
Q Consensus 227 ~~-l~~L~~L~Ls~n~-i~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l 304 (1077)
.. +++|++|.+..+. +++..+......++.|++|++.++.......+......+++++.+.+....
T Consensus 265 ~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~------------ 332 (482)
T KOG1947|consen 265 ASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLN------------ 332 (482)
T ss_pred HhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcC------------
Confidence 33 5666666655555 555555566666666777776666555444444445556666665543321
Q ss_pred ccCccccEEecchhHhhhhhhhHHHHhccCCCCcEEecccCcC
Q 001439 305 PHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSV 347 (1077)
Q Consensus 305 ~~l~~L~~L~L~~n~~~~~~~~~~~l~~~l~~L~~L~L~~~~~ 347 (1077)
.+..++.+.+..................+++++.+.+..+..
T Consensus 333 -~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~ 374 (482)
T KOG1947|consen 333 -GCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGI 374 (482)
T ss_pred -CCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhc
Confidence 133455555444311000123333344477777777777663
No 67
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.81 E-value=0.00065 Score=68.57 Aligned_cols=66 Identities=23% Similarity=0.354 Sum_probs=29.1
Q ss_pred cCCCCCcEEECCCC--CCCchhhHhhhccCCCcEEEcCCCCCCCCcChhhhhcccccceeecCCCcCC
Q 001439 178 SRLNNLKVFDLSGN--LFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEID 243 (1077)
Q Consensus 178 ~~l~~L~~L~Ls~n--~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~i~ 243 (1077)
-.+++|++|++|.| .+.+.++....++++|++|++++|++.-.-....+..+.+|..||+..|..+
T Consensus 62 P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 62 PKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVT 129 (260)
T ss_pred CCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCcc
Confidence 33444444444444 3333333333333444444444444432222334445555555555555443
No 68
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.76 E-value=0.00092 Score=67.51 Aligned_cols=59 Identities=39% Similarity=0.466 Sum_probs=24.4
Q ss_pred CCCCcEEECCCCCCCc-hhhHhhhccCCCcEEEcCCCCCCCCcC--hhhhhcccccceeecC
Q 001439 180 LNNLKVFDLSGNLFNN-SILSSLARLSSLRSLLLYDNRLEGSID--VKEFDSLSNLEELDMS 238 (1077)
Q Consensus 180 l~~L~~L~Ls~n~i~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~l~~L~~L~Ls 238 (1077)
+++|++|++++|++.. .-...+..+.+|..|+++.|..+..-. ...|.-+++|+.||-.
T Consensus 90 ~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~ 151 (260)
T KOG2739|consen 90 APNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGC 151 (260)
T ss_pred CCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHHHhhhhcccccc
Confidence 3444444444444432 111123334444455555554432111 1234445555555543
No 69
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.71 E-value=0.00039 Score=82.55 Aligned_cols=117 Identities=22% Similarity=0.123 Sum_probs=78.9
Q ss_pred cCCCCCcEEECCCCCCCch--hhHhhhccCCCcEEEcCCC-CCCCCcC---hhhhhcccccceeecCCCc-CCCCchhhh
Q 001439 178 SRLNNLKVFDLSGNLFNNS--ILSSLARLSSLRSLLLYDN-RLEGSID---VKEFDSLSNLEELDMSYNE-IDNFEVPQA 250 (1077)
Q Consensus 178 ~~l~~L~~L~Ls~n~i~~~--~~~~l~~l~~L~~L~L~~n-~l~~~~~---~~~l~~l~~L~~L~Ls~n~-i~~~~~~~~ 250 (1077)
..++.|+.|.+.++.-... .-.....++.|+.|+++++ ......+ ......+++|++|+++++. +++..+...
T Consensus 185 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l 264 (482)
T KOG1947|consen 185 SSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSAL 264 (482)
T ss_pred hhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHH
Confidence 4478899998888743322 3455677889999999873 2211111 2334456888899998887 777666666
Q ss_pred ccCCcccceeeecccccCCcchhhhhcCCCCCcceeccccCccc
Q 001439 251 CSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFT 294 (1077)
Q Consensus 251 ~~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 294 (1077)
...+++|+.|.+..+...+...+......++.|++|+++++...
T Consensus 265 ~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 265 ASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred HhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 66688888888666665455555666667777888887776554
No 70
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.40 E-value=0.00035 Score=70.29 Aligned_cols=82 Identities=24% Similarity=0.303 Sum_probs=43.6
Q ss_pred cCCCCEEeCCCCcCCCccCCcchhhccCCCCCcEEECCCCCCCchhhHhhhccCCCcEEEcCCCCCCCCcChhhhhcccc
Q 001439 152 LSSLTSLDLSANRLKGSIDIKGPKRLSRLNNLKVFDLSGNLFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSN 231 (1077)
Q Consensus 152 l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~ 231 (1077)
+.+.+.|++-+|.+.+. ....+++.|++|.||-|+|+. ...+..|++|++|+|..|.|...-....+.++++
T Consensus 18 l~~vkKLNcwg~~L~DI------sic~kMp~lEVLsLSvNkIss--L~pl~rCtrLkElYLRkN~I~sldEL~YLknlps 89 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI------SICEKMPLLEVLSLSVNKISS--LAPLQRCTRLKELYLRKNCIESLDELEYLKNLPS 89 (388)
T ss_pred HHHhhhhcccCCCccHH------HHHHhcccceeEEeecccccc--chhHHHHHHHHHHHHHhcccccHHHHHHHhcCch
Confidence 34445555555555432 233455666666666666654 2335556666666666666553333344555566
Q ss_pred cceeecCCCc
Q 001439 232 LEELDMSYNE 241 (1077)
Q Consensus 232 L~~L~Ls~n~ 241 (1077)
|+.|.|..|.
T Consensus 90 Lr~LWL~ENP 99 (388)
T KOG2123|consen 90 LRTLWLDENP 99 (388)
T ss_pred hhhHhhccCC
Confidence 6666665553
No 71
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.29 E-value=0.00061 Score=68.64 Aligned_cols=103 Identities=21% Similarity=0.263 Sum_probs=80.3
Q ss_pred CCCCcEEECCCCCCCchhhHhhhccCCCcEEEcCCCCCCCCcChhhhhcccccceeecCCCcCCCCchhhhccCCcccce
Q 001439 180 LNNLKVFDLSGNLFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSY 259 (1077)
Q Consensus 180 l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~ 259 (1077)
+.+.+.|++-+|.+.+ .....+++.|+.|.|+-|.|+ ....+..+++|++|.|..|.|.++....-+.++++|+.
T Consensus 18 l~~vkKLNcwg~~L~D--Isic~kMp~lEVLsLSvNkIs---sL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDD--ISICEKMPLLEVLSLSVNKIS---SLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRT 92 (388)
T ss_pred HHHhhhhcccCCCccH--HHHHHhcccceeEEeeccccc---cchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence 5577889999998876 345678999999999999987 34678899999999999999999888888899999999
Q ss_pred eeecccccCCcc---hhhhhcCCCCCcceec
Q 001439 260 LHLLRVGIRDGS---KLLQSMGSFPSLNTLD 287 (1077)
Q Consensus 260 L~l~~~~~~~~~---~~~~~l~~~~~L~~L~ 287 (1077)
|-+.+|...... .-...+.-+|+|++||
T Consensus 93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 988887665321 1223445566666664
No 72
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=95.93 E-value=0.00042 Score=79.39 Aligned_cols=143 Identities=26% Similarity=0.245 Sum_probs=94.6
Q ss_pred CcEeeCCCCCCCccccchhhhhccCCCCCcEEeCCCCCCCchhhHHhhc----c-CCCCEEeCCCCcCCCccCCcchhhc
Q 001439 103 LESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLAR----L-SSLTSLDLSANRLKGSIDIKGPKRL 177 (1077)
Q Consensus 103 L~~L~Ls~n~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~----l-~~L~~L~Ls~n~l~~~~~~~~~~~l 177 (1077)
+..|.|.+|.+...........+....+|..|++++|.+.+.--..+.+ . ..|++|++..|.+++......++.+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 7788888888877666666667788888888888888887554444433 2 4577788888887766555555677
Q ss_pred cCCCCCcEEECCCCCCCc----hhhHhhh----ccCCCcEEEcCCCCCCCCcC---hhhhhcccc-cceeecCCCcCCCC
Q 001439 178 SRLNNLKVFDLSGNLFNN----SILSSLA----RLSSLRSLLLYDNRLEGSID---VKEFDSLSN-LEELDMSYNEIDNF 245 (1077)
Q Consensus 178 ~~l~~L~~L~Ls~n~i~~----~~~~~l~----~l~~L~~L~L~~n~l~~~~~---~~~l~~l~~-L~~L~Ls~n~i~~~ 245 (1077)
.....++.+|++.|.+.. .++..+. ...++++|.+.+|.++...- ...+...+. +.+|++..|.+.+.
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 778888888888887642 2233333 35677888888877652111 122334444 66677777776654
No 73
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.30 E-value=0.0065 Score=36.43 Aligned_cols=19 Identities=47% Similarity=0.641 Sum_probs=9.2
Q ss_pred CCeEeCCCCcCcccCCCccc
Q 001439 930 IESLDLSYNKLSWKIPYQLV 949 (1077)
Q Consensus 930 L~~LdLs~N~l~~~ip~~l~ 949 (1077)
|+.|||++|+|+ .+|.+|+
T Consensus 2 L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp ESEEEETSSEES-EEGTTTT
T ss_pred ccEEECCCCcCE-eCChhhc
Confidence 445555555555 4444433
No 74
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.08 E-value=0.0062 Score=36.54 Aligned_cols=20 Identities=60% Similarity=0.908 Sum_probs=10.6
Q ss_pred CceeeCcCCcCCCCCCccccC
Q 001439 906 IQTLNLSHNNLAGPIPSTFSN 926 (1077)
Q Consensus 906 L~~L~Ls~N~l~~~~p~~~~~ 926 (1077)
|++|||++|+|+ .+|..|++
T Consensus 2 L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp ESEEEETSSEES-EEGTTTTT
T ss_pred ccEEECCCCcCE-eCChhhcC
Confidence 455555555555 45554443
No 75
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.33 E-value=0.0033 Score=72.22 Aligned_cols=194 Identities=27% Similarity=0.226 Sum_probs=125.0
Q ss_pred eEEEEcCCcccCc-cccccccccccCcCCcEeeCCCCCCCccccchhhhhccCC-CCCcEEeCCCCCCCc----hhhHHh
Q 001439 76 VVVLDLSQTHRGE-YWYLNASLFTPFQQLESLDLRDNDIAGCVENEGLERLSRL-SNLKMLNLVGNLFNN----SILSSL 149 (1077)
Q Consensus 76 v~~l~L~~~~~~~-~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~l-~~L~~L~Ls~n~l~~----~~~~~l 149 (1077)
...++|.++.+.. ....-...+.....|..|++++|.+.+.......+.+... +.|++|++..|.+++ .+...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 4455666663322 1223344567788999999999999854444333444444 678889999988765 356677
Q ss_pred hccCCCCEEeCCCCcCCCccCCcchhhc----cCCCCCcEEECCCCCCCchhh----HhhhccCC-CcEEEcCCCCCCCC
Q 001439 150 ARLSSLTSLDLSANRLKGSIDIKGPKRL----SRLNNLKVFDLSGNLFNNSIL----SSLARLSS-LRSLLLYDNRLEGS 220 (1077)
Q Consensus 150 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~l----~~l~~L~~L~Ls~n~i~~~~~----~~l~~l~~-L~~L~L~~n~l~~~ 220 (1077)
....+++.+|++.|.+....-...+..+ ....++++|++++|.++.... ..+...+. ++.|++..|.+...
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 7789999999999987422111122333 357889999999998875332 23445555 77899999987632
Q ss_pred cC---hhhhhcc-cccceeecCCCcCCCCch---hhhccCCcccceeeecccccCC
Q 001439 221 ID---VKEFDSL-SNLEELDMSYNEIDNFEV---PQACSGLRKLSYLHLLRVGIRD 269 (1077)
Q Consensus 221 ~~---~~~l~~l-~~L~~L~Ls~n~i~~~~~---~~~~~~l~~L~~L~l~~~~~~~ 269 (1077)
.- ...+..+ ..+++++++.|.++.... .+.+..++.++.+.+..+.+..
T Consensus 249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 11 1123334 577999999998876543 3344455566666666666554
No 76
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.73 E-value=0.039 Score=53.68 Aligned_cols=81 Identities=28% Similarity=0.347 Sum_probs=49.3
Q ss_pred CcEEeCCCCCCCchhhHHhhccCCCCEEeCCCCcCCCccCCcchhhccC-CCCCcEEECCCC-CCCchhhHhhhccCCCc
Q 001439 131 LKMLNLVGNLFNNSILSSLARLSSLTSLDLSANRLKGSIDIKGPKRLSR-LNNLKVFDLSGN-LFNNSILSSLARLSSLR 208 (1077)
Q Consensus 131 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~-l~~L~~L~Ls~n-~i~~~~~~~l~~l~~L~ 208 (1077)
++.+|-+++.|..+.-+.+.+++.++.|.+.+|.-.+.-- .+.+++ .++|+.|++++| .|++.....+.++++|+
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~---L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr 179 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWC---LERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLR 179 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHH---HHHhcccccchheeeccCCCeechhHHHHHHHhhhhH
Confidence 4555556655555555666666666666666665332211 123333 467888888877 57766677777777777
Q ss_pred EEEcCC
Q 001439 209 SLLLYD 214 (1077)
Q Consensus 209 ~L~L~~ 214 (1077)
.|.+++
T Consensus 180 ~L~l~~ 185 (221)
T KOG3864|consen 180 RLHLYD 185 (221)
T ss_pred HHHhcC
Confidence 776654
No 77
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=91.23 E-value=0.0088 Score=58.95 Aligned_cols=82 Identities=22% Similarity=0.225 Sum_probs=72.3
Q ss_pred CCceEECCCCcCCCCCcccccccccCceeeCcCCcCCCCCCccccCCCCCCeEeCCCCcCcccCCCcccCCCCcceEEcc
Q 001439 881 LLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVA 960 (1077)
Q Consensus 881 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~l~ls 960 (1077)
..+.||++.|++. .....|.-++.|..||+|.|.+. ..|..++.+..+..+++..|.++ ..|-++...+.++++++-
T Consensus 43 r~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k 119 (326)
T KOG0473|consen 43 RVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQK 119 (326)
T ss_pred eeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhc
Confidence 4578999999987 34567888899999999999998 78999999999999999999998 789999999999999999
Q ss_pred ccccc
Q 001439 961 YNNLS 965 (1077)
Q Consensus 961 ~N~l~ 965 (1077)
.|.+.
T Consensus 120 ~~~~~ 124 (326)
T KOG0473|consen 120 KTEFF 124 (326)
T ss_pred cCcch
Confidence 99864
No 78
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.34 E-value=0.1 Score=50.97 Aligned_cols=82 Identities=23% Similarity=0.233 Sum_probs=53.2
Q ss_pred CCCcEEECCCCCCCchhhHhhhccCCCcEEEcCCCCCCCCcChhhhhc-ccccceeecCCC-cCCCCchhhhccCCcccc
Q 001439 181 NNLKVFDLSGNLFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDS-LSNLEELDMSYN-EIDNFEVPQACSGLRKLS 258 (1077)
Q Consensus 181 ~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~-l~~L~~L~Ls~n-~i~~~~~~~~~~~l~~L~ 258 (1077)
..++.+|-+++.|..+..+.+.+++.++.|.+.+|.-.+....+.+++ .++|+.|++++| +|++. ....+..+++|+
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~-GL~~L~~lknLr 179 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDG-GLACLLKLKNLR 179 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechh-HHHHHHHhhhhH
Confidence 456778888888877777778888888888888877544433334443 377888888877 45542 234455555555
Q ss_pred eeeec
Q 001439 259 YLHLL 263 (1077)
Q Consensus 259 ~L~l~ 263 (1077)
.|.+.
T Consensus 180 ~L~l~ 184 (221)
T KOG3864|consen 180 RLHLY 184 (221)
T ss_pred HHHhc
Confidence 55543
No 79
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=90.16 E-value=0.16 Score=28.17 Aligned_cols=13 Identities=54% Similarity=0.871 Sum_probs=4.7
Q ss_pred CCCeEeCCCCcCc
Q 001439 929 NIESLDLSYNKLS 941 (1077)
Q Consensus 929 ~L~~LdLs~N~l~ 941 (1077)
+|+.|+|++|+|+
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 3444444444443
No 80
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=88.76 E-value=1.6 Score=48.34 Aligned_cols=60 Identities=23% Similarity=0.179 Sum_probs=32.0
Q ss_pred CccEEEccCCcCCCCch---hhhcCCCCCcEEecCCCccccc---cCCccccCCCCcceeecCCCe
Q 001439 363 HLQELHMADNDLRGSLP---WCLANMTSLRILDVSSNQLIGS---ISSSPLIHLTSIEDLILSDNH 422 (1077)
Q Consensus 363 ~L~~L~L~~n~l~~~~p---~~l~~l~~L~~L~Ls~n~l~~~---i~~~~l~~l~~L~~L~L~~n~ 422 (1077)
-+.++.++.|....... ..+..-+.+..|++++|..... +.+.....-..+..+..+.|.
T Consensus 414 ~l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~n~ 479 (553)
T KOG4242|consen 414 VLAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSLNL 479 (553)
T ss_pred cccCcccCCCcccccHHHHHHhhccCcccccccccCCCcccCCCCcCccccCCCCccCCCCCCCCC
Confidence 36667777776653222 2234456788888888864321 112233333445555555553
No 81
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=88.57 E-value=0.34 Score=26.84 Aligned_cols=13 Identities=69% Similarity=0.787 Sum_probs=5.4
Q ss_pred CCCEEEccCCcCC
Q 001439 587 FLQFLDLSNNQLT 599 (1077)
Q Consensus 587 ~L~~L~Ls~n~l~ 599 (1077)
+|++|++++|+++
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 4555555555554
No 82
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=86.95 E-value=0.61 Score=29.18 Aligned_cols=22 Identities=45% Similarity=0.551 Sum_probs=15.9
Q ss_pred CCCCCEEEccCCcCCCCcchHhh
Q 001439 585 MNFLQFLDLSNNQLTGEIPEHLA 607 (1077)
Q Consensus 585 l~~L~~L~Ls~n~l~~~ip~~~~ 607 (1077)
+++|++|++++|+++ .+|...|
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00369 1 LPNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHHHc
Confidence 356778888888777 7777665
No 83
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=86.95 E-value=0.61 Score=29.18 Aligned_cols=22 Identities=45% Similarity=0.551 Sum_probs=15.9
Q ss_pred CCCCCEEEccCCcCCCCcchHhh
Q 001439 585 MNFLQFLDLSNNQLTGEIPEHLA 607 (1077)
Q Consensus 585 l~~L~~L~Ls~n~l~~~ip~~~~ 607 (1077)
+++|++|++++|+++ .+|...|
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00370 1 LPNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHHHc
Confidence 356778888888777 7777665
No 84
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=86.66 E-value=0.32 Score=29.81 Aligned_cols=21 Identities=38% Similarity=0.463 Sum_probs=11.3
Q ss_pred CCCcEEECCCCCCCchhhHhh
Q 001439 181 NNLKVFDLSGNLFNNSILSSL 201 (1077)
Q Consensus 181 ~~L~~L~Ls~n~i~~~~~~~l 201 (1077)
++|++|++++|.+++..+..+
T Consensus 2 ~~L~~L~l~~n~i~~~g~~~l 22 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGASAL 22 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHHHh
Confidence 566666666666665555444
No 85
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=86.18 E-value=0.029 Score=55.45 Aligned_cols=86 Identities=20% Similarity=0.198 Sum_probs=53.1
Q ss_pred ccCcCCcEeeCCCCCCCccccchhhhhccCCCCCcEEeCCCCCCCchhhHHhhccCCCCEEeCCCCcCCCccCCcchhhc
Q 001439 98 TPFQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLARLSSLTSLDLSANRLKGSIDIKGPKRL 177 (1077)
Q Consensus 98 ~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l 177 (1077)
..++..++||++.|++...... ++-++.|..|+++.|.+. ..|..++.+..++++++..|..+. . |.++
T Consensus 39 ~~~kr~tvld~~s~r~vn~~~n-----~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~~-~----p~s~ 107 (326)
T KOG0473|consen 39 ASFKRVTVLDLSSNRLVNLGKN-----FSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHSQ-Q----PKSQ 107 (326)
T ss_pred hccceeeeehhhhhHHHhhccc-----hHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchhh-C----Cccc
Confidence 3455556666665554332221 445566666777766654 567777777777777777666542 2 3577
Q ss_pred cCCCCCcEEECCCCCCC
Q 001439 178 SRLNNLKVFDLSGNLFN 194 (1077)
Q Consensus 178 ~~l~~L~~L~Ls~n~i~ 194 (1077)
...++++++++-++.+.
T Consensus 108 ~k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 108 KKEPHPKKNEQKKTEFF 124 (326)
T ss_pred cccCCcchhhhccCcch
Confidence 77777777777777654
No 86
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=85.69 E-value=0.59 Score=29.26 Aligned_cols=13 Identities=62% Similarity=0.825 Sum_probs=6.0
Q ss_pred CCCeEeCCCCcCc
Q 001439 929 NIESLDLSYNKLS 941 (1077)
Q Consensus 929 ~L~~LdLs~N~l~ 941 (1077)
+|+.|+|++|+|+
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00369 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 4444444444444
No 87
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=85.69 E-value=0.59 Score=29.26 Aligned_cols=13 Identities=62% Similarity=0.825 Sum_probs=6.0
Q ss_pred CCCeEeCCCCcCc
Q 001439 929 NIESLDLSYNKLS 941 (1077)
Q Consensus 929 ~L~~LdLs~N~l~ 941 (1077)
+|+.|+|++|+|+
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00370 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 4444444444444
No 88
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=85.33 E-value=0.45 Score=29.15 Aligned_cols=21 Identities=33% Similarity=0.415 Sum_probs=9.7
Q ss_pred CCCcEEeCCCCCCCchhhHHh
Q 001439 129 SNLKMLNLVGNLFNNSILSSL 149 (1077)
Q Consensus 129 ~~L~~L~Ls~n~l~~~~~~~l 149 (1077)
++|++|+|++|.+++.....|
T Consensus 2 ~~L~~L~l~~n~i~~~g~~~l 22 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGASAL 22 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHHHh
Confidence 445555555555554444444
No 89
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=73.27 E-value=15 Score=41.13 Aligned_cols=63 Identities=24% Similarity=0.226 Sum_probs=35.8
Q ss_pred CCcEEecccCcCCCCcccccccccCCCCccEEEccCCcCCC----CchhhhcCCCCCcEEecCCCcc
Q 001439 336 SIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRG----SLPWCLANMTSLRILDVSSNQL 398 (1077)
Q Consensus 336 ~L~~L~L~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~Ls~n~l 398 (1077)
-+..+.++.|............+..-+.+.+|++++|.... .+|.....-.+++....+.|..
T Consensus 414 ~l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~n~p 480 (553)
T KOG4242|consen 414 VLAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSLNLP 480 (553)
T ss_pred cccCcccCCCcccccHHHHHHhhccCcccccccccCCCcccCCCCcCccccCCCCccCCCCCCCCCc
Confidence 45566666666544433322344555677888888876543 3444444455666666666643
No 90
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=73.07 E-value=2.8 Score=26.27 Aligned_cols=15 Identities=60% Similarity=0.829 Sum_probs=10.8
Q ss_pred CCCCCeEeCCCCcCc
Q 001439 927 LRNIESLDLSYNKLS 941 (1077)
Q Consensus 927 l~~L~~LdLs~N~l~ 941 (1077)
+++|+.|+|++|+|+
T Consensus 1 L~~L~~L~L~~NkI~ 15 (26)
T smart00365 1 LTNLEELDLSQNKIK 15 (26)
T ss_pred CCccCEEECCCCccc
Confidence 356777777777775
No 91
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=64.77 E-value=6.3 Score=25.19 Aligned_cols=20 Identities=25% Similarity=0.331 Sum_probs=11.3
Q ss_pred CCCcEEECCCCCCCchhhHh
Q 001439 181 NNLKVFDLSGNLFNNSILSS 200 (1077)
Q Consensus 181 ~~L~~L~Ls~n~i~~~~~~~ 200 (1077)
++|++|||++|.+.......
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~ 21 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARA 21 (28)
T ss_pred CccCEEECCCCCCCHHHHHH
Confidence 35666666666665544333
No 92
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=63.63 E-value=7.5 Score=24.86 Aligned_cols=14 Identities=29% Similarity=0.513 Sum_probs=7.2
Q ss_pred CCcEEeCCCCCCCc
Q 001439 130 NLKMLNLVGNLFNN 143 (1077)
Q Consensus 130 ~L~~L~Ls~n~l~~ 143 (1077)
+|++|||++|.+..
T Consensus 3 ~L~~LdL~~N~i~~ 16 (28)
T smart00368 3 SLRELDLSNNKLGD 16 (28)
T ss_pred ccCEEECCCCCCCH
Confidence 45555555555543
No 93
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=62.79 E-value=5.4 Score=24.93 Aligned_cols=13 Identities=38% Similarity=0.470 Sum_probs=6.5
Q ss_pred CCceEECCCCcCC
Q 001439 881 LLSGLDLSCNRLI 893 (1077)
Q Consensus 881 ~L~~L~Ls~N~l~ 893 (1077)
.|+.|+.++|+|+
T Consensus 3 ~L~~L~vs~N~Lt 15 (26)
T smart00364 3 SLKELNVSNNQLT 15 (26)
T ss_pred ccceeecCCCccc
Confidence 3445555555554
No 94
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=53.94 E-value=6 Score=54.12 Aligned_cols=36 Identities=22% Similarity=0.116 Sum_probs=32.1
Q ss_pred eCCCCcCcccCCCcccCCCCcceEEcccccccccCC
Q 001439 934 DLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIP 969 (1077)
Q Consensus 934 dLs~N~l~~~ip~~l~~l~~L~~l~ls~N~l~g~~p 969 (1077)
||++|+|+..-+..|..+++|+.|+|++|++.+.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC~ 36 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECDCG 36 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccccccc
Confidence 789999997777788899999999999999998765
No 95
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=50.47 E-value=16 Score=22.81 Aligned_cols=11 Identities=55% Similarity=0.770 Sum_probs=5.9
Q ss_pred CCCcEEECCCC
Q 001439 181 NNLKVFDLSGN 191 (1077)
Q Consensus 181 ~~L~~L~Ls~n 191 (1077)
++|++|++++|
T Consensus 2 ~~L~~L~l~~C 12 (26)
T smart00367 2 PNLRELDLSGC 12 (26)
T ss_pred CCCCEeCCCCC
Confidence 44555555555
No 96
>PF15102 TMEM154: TMEM154 protein family
Probab=48.78 E-value=11 Score=35.04 Aligned_cols=23 Identities=17% Similarity=0.385 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhh
Q 001439 1028 TSYVIVIFGIVAVLYVNARWRRR 1050 (1077)
Q Consensus 1028 ~~~~~~~~~~~~~~~~~~~~~~~ 1050 (1077)
+.+++++++++++++++||||.+
T Consensus 66 VLLvlLLl~vV~lv~~~kRkr~K 88 (146)
T PF15102_consen 66 VLLVLLLLSVVCLVIYYKRKRTK 88 (146)
T ss_pred HHHHHHHHHHHHheeEEeecccC
Confidence 44455555566666666777764
No 97
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=41.50 E-value=16 Score=41.80 Aligned_cols=64 Identities=22% Similarity=0.181 Sum_probs=30.3
Q ss_pred ccceeeecccccCCcchhhhhcCCCCCcceeccccCcccccccccccCCccCccccEEecchhHh
Q 001439 256 KLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARI 320 (1077)
Q Consensus 256 ~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~~ 320 (1077)
.+..+.+++|++...+.+...-...|+|+.|+|++|............++ ...|++|.+.+|.+
T Consensus 219 ~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k-~l~Leel~l~GNPl 282 (585)
T KOG3763|consen 219 EILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLK-GLPLEELVLEGNPL 282 (585)
T ss_pred ceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhc-CCCHHHeeecCCcc
Confidence 34444444444444444444445567777777777622111111111122 12366677777644
No 98
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=40.72 E-value=14 Score=32.02 Aligned_cols=15 Identities=27% Similarity=0.363 Sum_probs=10.2
Q ss_pred CCCccchhhhHHHHHH
Q 001439 1 MGGSKSKMVVMFVLLL 16 (1077)
Q Consensus 1 ~~~~~~~~~~~~~~~~ 16 (1077)
|+ ||+++++.+++.+
T Consensus 1 Ma-SK~~llL~l~LA~ 15 (95)
T PF07172_consen 1 MA-SKAFLLLGLLLAA 15 (95)
T ss_pred Cc-hhHHHHHHHHHHH
Confidence 77 8888877655433
No 99
>PRK00523 hypothetical protein; Provisional
Probab=39.04 E-value=56 Score=26.31 Aligned_cols=30 Identities=10% Similarity=0.225 Sum_probs=17.7
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhhhhhHhH
Q 001439 1024 ITFTTSYVIVIFGIVAVLYVNARWRRRWFY 1053 (1077)
Q Consensus 1024 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1053 (1077)
++++++.+.+++.+++.+|+.|++-.+|+.
T Consensus 6 l~I~l~i~~li~G~~~Gffiark~~~k~l~ 35 (72)
T PRK00523 6 LALGLGIPLLIVGGIIGYFVSKKMFKKQIR 35 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555566667777777666664
No 100
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=36.79 E-value=39 Score=30.74 Aligned_cols=7 Identities=14% Similarity=0.358 Sum_probs=2.5
Q ss_pred HHHHhhh
Q 001439 1037 IVAVLYV 1043 (1077)
Q Consensus 1037 ~~~~~~~ 1043 (1077)
++++++|
T Consensus 80 ~Illi~y 86 (122)
T PF01102_consen 80 IILLISY 86 (122)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 101
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=35.85 E-value=29 Score=39.89 Aligned_cols=12 Identities=33% Similarity=0.617 Sum_probs=7.5
Q ss_pred CCCCcEEecccC
Q 001439 334 MPSIQYLSLSNS 345 (1077)
Q Consensus 334 l~~L~~L~L~~~ 345 (1077)
.|+|+.|+|++|
T Consensus 243 apklk~L~LS~N 254 (585)
T KOG3763|consen 243 APKLKTLDLSHN 254 (585)
T ss_pred cchhheeecccc
Confidence 566666666665
No 102
>PRK01844 hypothetical protein; Provisional
Probab=34.03 E-value=75 Score=25.63 Aligned_cols=25 Identities=8% Similarity=0.364 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhHhH
Q 001439 1029 SYVIVIFGIVAVLYVNARWRRRWFY 1053 (1077)
Q Consensus 1029 ~~~~~~~~~~~~~~~~~~~~~~~~~ 1053 (1077)
+.+.+++.+++.+|+.|++-.+|+.
T Consensus 10 ~I~~li~G~~~Gff~ark~~~k~lk 34 (72)
T PRK01844 10 GVVALVAGVALGFFIARKYMMNYLQ 34 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444556666776777666654
No 103
>PF15050 SCIMP: SCIMP protein
Probab=32.98 E-value=59 Score=28.84 Aligned_cols=25 Identities=24% Similarity=0.557 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhh
Q 001439 1026 FTTSYVIVIFGIVAVLYVNARWRRR 1050 (1077)
Q Consensus 1026 ~~~~~~~~~~~~~~~~~~~~~~~~~ 1050 (1077)
++++.+++.+++..++|+..||..+
T Consensus 12 LAVaII~vS~~lglIlyCvcR~~lR 36 (133)
T PF15050_consen 12 LAVAIILVSVVLGLILYCVCRWQLR 36 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444445555566544
No 104
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=30.17 E-value=72 Score=22.10 Aligned_cols=11 Identities=18% Similarity=0.398 Sum_probs=4.3
Q ss_pred HHHHHHHHHHH
Q 001439 1025 TFTTSYVIVIF 1035 (1077)
Q Consensus 1025 ~~~~~~~~~~~ 1035 (1077)
++.+|++++++
T Consensus 11 ~V~vg~~iiii 21 (38)
T PF02439_consen 11 AVVVGMAIIII 21 (38)
T ss_pred HHHHHHHHHHH
Confidence 33334444333
No 105
>PF07204 Orthoreo_P10: Orthoreovirus membrane fusion protein p10; InterPro: IPR009854 This family consists of several Orthoreovirus membrane fusion protein p10 sequences. p10 is thought to be a multifunctional protein that plays a key role in virus-host interaction [].
Probab=28.79 E-value=39 Score=28.51 Aligned_cols=30 Identities=10% Similarity=0.171 Sum_probs=19.9
Q ss_pred chhhhhHHHHHHHHHHHHHHHHhhhhhhhh
Q 001439 1019 MDIFFITFTTSYVIVIFGIVAVLYVNARWR 1048 (1077)
Q Consensus 1019 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1048 (1077)
..|.|++.+.++++++++++.++.++.||+
T Consensus 40 ayWpyLA~GGG~iLilIii~Lv~CC~~K~K 69 (98)
T PF07204_consen 40 AYWPYLAAGGGLILILIIIALVCCCRAKHK 69 (98)
T ss_pred hhhHHhhccchhhhHHHHHHHHHHhhhhhh
Confidence 356777777777777766666666655654
No 106
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=26.40 E-value=37 Score=47.13 Aligned_cols=33 Identities=27% Similarity=0.373 Sum_probs=30.6
Q ss_pred eCcCCcCCCCCCccccCCCCCCeEeCCCCcCcc
Q 001439 910 NLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSW 942 (1077)
Q Consensus 910 ~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~ 942 (1077)
||++|+|+...+..|..+++|+.|+|++|.+..
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~C 33 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFEC 33 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcccc
Confidence 699999998888899999999999999998874
No 107
>PF13260 DUF4051: Protein of unknown function (DUF4051)
Probab=22.43 E-value=51 Score=23.74 Aligned_cols=15 Identities=27% Similarity=0.350 Sum_probs=12.3
Q ss_pred cHHHHHHHHhchhhc
Q 001439 28 LNHERFALLQLKLFF 42 (1077)
Q Consensus 28 ~~~~~~all~~k~~~ 42 (1077)
..+||+|||+-++-+
T Consensus 29 frqdrdallear~kl 43 (54)
T PF13260_consen 29 FRQDRDALLEARNKL 43 (54)
T ss_pred HhhhHHHHHHHHHHH
Confidence 458999999988765
No 108
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=21.38 E-value=1.4e+02 Score=25.79 Aligned_cols=8 Identities=13% Similarity=0.243 Sum_probs=2.9
Q ss_pred hhhhhHhH
Q 001439 1046 RWRRRWFY 1053 (1077)
Q Consensus 1046 ~~~~~~~~ 1053 (1077)
+....|.+
T Consensus 39 KC~~~~k~ 46 (102)
T PF15176_consen 39 KCPVWYKY 46 (102)
T ss_pred HhHHHHHH
Confidence 33333333
Done!