Query 001439
Match_columns 1077
No_of_seqs 594 out of 5385
Neff 10.0
Searched_HMMs 29240
Date Tue Mar 26 16:16:05 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001439.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_741-745//hhsearch_pdb/001439hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 1.0 1 1 738.5 50.1 740 22-1002 4-752 (768)
2 3rgz_A Protein brassinosteroid 1.0 1 1 583.1 43.8 658 130-990 51-718 (768)
3 1ziw_A TOLL-like receptor 3; i 1.0 1 1 480.3 50.2 135 101-244 25-159 (680)
4 1ziw_A TOLL-like receptor 3; i 1.0 1 1 475.5 50.7 589 129-969 25-626 (680)
5 3j0a_A TOLL-like receptor 5; m 1.0 1 1 456.5 44.9 317 562-999 266-589 (844)
6 3t6q_A CD180 antigen; protein- 1.0 1 1 430.6 43.0 304 563-970 255-565 (606)
7 3t6q_A CD180 antigen; protein- 1.0 1 1 429.7 39.5 190 750-993 371-564 (606)
8 3vq2_A TLR4, TOLL-like recepto 1.0 1 1 421.6 36.5 167 750-970 394-563 (606)
9 3j0a_A TOLL-like receptor 5; m 1.0 1 1 420.4 43.3 295 611-995 266-566 (844)
10 3vq2_A TLR4, TOLL-like recepto 1.0 1 1 410.7 38.8 142 750-945 419-562 (606)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=738.49 Aligned_cols=740 Identities=30% Similarity=0.436 Sum_probs=463.6
Q ss_pred CCCCCCCHHHHHHHHHCHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf 83444748999999820000038877656887899998875644117469989469998277666763223433256686
Q 001439 22 GWSEGCLNHERFALLQLKLFFIDPYNYLLDWVDDEGATDCCQWERVSCNNTMGRVVVLDLSQTHRGEYWYLNASLFTPFQ 101 (1077)
Q Consensus 22 ~~~~~~~~~~~~all~~k~~~~~~~~~~~~w~~~~~~~~~c~w~gv~c~~~~~~v~~l~l~~~~~~~~~~~~~~~~~~l~ 101 (1077)
+.++.+.++|++|||+||+++.||. ++++|+. + ++||.|+||+|+ .++|+.++|++....|....-+..+..++
T Consensus 4 ~~~~~~~~~~~~all~~k~~~~~~~-~l~~W~~-~--~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~~l~~L~ 77 (768)
T 3rgz_A 4 ASPSQSLYREIHQLISFKDVLPDKN-LLPDWSS-N--KNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLSLT 77 (768)
T ss_dssp ----CCHHHHHHHHHHHHTTCSCTT-SSTTCCT-T--SCGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHHHHHTTTCT
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCC-CCCCCCC-C--CCCCCCCCEEEC--CCCEEEEECCCCCCCCCCCCCCHHHHCCC
T ss_conf 7656687899999999996678962-1468789-9--987688413878--99278987789986775576696573168
Q ss_pred CCCEEECCCCCCCCCCCCHHHHHCCCCCCCCEEECCCCCCCCHHHH--HHHCCCCCCEEECCCCCCCCCCCCCCHHHCCC
Q ss_conf 7767648999888641001333203899986995899979801368--75226998888489996888658751011049
Q 001439 102 QLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILS--SLARLSSLTSLDLSANRLKGSIDIKGPKRLSR 179 (1077)
Q Consensus 102 ~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~--~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~ 179 (1077)
.|+.++++.+.+.... ..+.++++|++|+|++|.+.+.+|. .++++++|++|++++|.+.+.++. ..+.+
T Consensus 78 ~L~~l~~~~~~~~~l~-----~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~---~~~~~ 149 (768)
T 3rgz_A 78 GLESLFLSNSHINGSV-----SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKV---SGGLK 149 (768)
T ss_dssp TCCEEECTTSCEEECC-----CCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSC---CSCCC
T ss_pred CCCCCCCCCCCCCCCC-----HHHCCCCCCCEEECCCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCH---HHHCC
T ss_conf 0224678688867870-----332457889989898985787078967872788999898968826774797---78563
Q ss_pred CCCCCEEECCCCCCCCHHHHH---HHCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHCCCCCC
Q ss_conf 999869978998789510475---42067885787578878897574433002666265067786798740211037756
Q 001439 180 LNNLKVFDLSGNLFNNSILSS---LARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRK 256 (1077)
Q Consensus 180 l~~L~~L~Ls~n~l~~~~~~~---l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~ 256 (1077)
+++|++|++++|.+++..+.. +.++++|++|++++|.+.+..+ +..+++|++|++++|.+.... +. +.
T Consensus 150 l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~l~~L~~L~Ls~n~l~~~~-~~-l~---- 220 (768)
T 3rgz_A 150 LNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD---VSRCVNLEFLDVSSNNFSTGI-PF-LG---- 220 (768)
T ss_dssp CTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB---CTTCTTCCEEECCSSCCCSCC-CB-CT----
T ss_pred CCCCCEEECCCCCCCCCCCHHHHHHCCCCCCCEEECCCCCCCCCCC---CCCCCCCCEEECCCCCCCCCC-CC-CC----
T ss_conf 8899989897983588587155664358988989897880346578---454786898989288278877-11-12----
Q ss_pred CCEEEECCCCCCCCCHHHHHCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHCCCCC
Q ss_conf 65443013456784023342089998546504467554553333567766765437714014755203168997301899
Q 001439 257 LSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIALNTSFLQIIGESMPS 336 (1077)
Q Consensus 257 L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~~l~~ 336 (1077)
.+++|++|++++| .+.+.++..+.. +++
T Consensus 221 -------------------------------------------------~l~~L~~L~Ls~n--~l~~~~~~~l~~-l~~ 248 (768)
T 3rgz_A 221 -------------------------------------------------DCSALQHLDISGN--KLSGDFSRAIST-CTE 248 (768)
T ss_dssp -------------------------------------------------TCCSCCEEECCSS--CCCSCHHHHTTT-CSS
T ss_pred -------------------------------------------------CCCCCCEEECCCC--CCCCCCCHHHHC-CCC
T ss_conf -------------------------------------------------6999998979488--587816577744-888
Q ss_pred CCEEECCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHCCC-CCCCEEECCCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 7577234575888854555565588774679835875789740311079-987499367974543237863337787655
Q 001439 337 IQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANM-TSLRILDVSSNQLIGSISSSPLIHLTSIED 415 (1077)
Q Consensus 337 L~~L~L~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l-~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~ 415 (1077)
|+.|++++|.+.+..+. . .+++|++|++++|.+++.+|..+... ++|++|++++|.+.+.+ +..+.++++|++
T Consensus 249 L~~L~Ls~n~l~~~~~~---~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~-p~~~~~l~~L~~ 322 (768)
T 3rgz_A 249 LKLLNISSNQFVGPIPP---L--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAV-PPFFGSCSLLES 322 (768)
T ss_dssp CCEEECCSSCCEESCCC---C--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECC-CGGGGGCTTCCE
T ss_pred CCEEECCCCCCCCCCCC---C--CCCCCCEEECCCCCCCCCCCHHHHHHCCCCCEEECCCCCCCCCC-CHHHHCCCCCCE
T ss_conf 89898988866571672---4--36878989791785577258888844686889989689677842-367755877667
Q ss_pred EECCCCEEEEECCCCCCCCCCCCCEEECCCCCCEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCHHCCCCCCCCEEEE
Q ss_conf 64288732200284323479885187357874101220346677786110377604688888764300028886539990
Q 001439 416 LILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRL 495 (1077)
Q Consensus 416 L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~p~~l~~~~~L~~L~l 495 (1077)
|++++|.+.+.++...+..+++|
T Consensus 323 L~L~~n~l~~~ip~~~l~~l~~L--------------------------------------------------------- 345 (768)
T 3rgz_A 323 LALSSNNFSGELPMDTLLKMRGL--------------------------------------------------------- 345 (768)
T ss_dssp EECCSSEEEEECCHHHHTTCTTC---------------------------------------------------------
T ss_pred EECCCCCCCCCCCHHHHHCCCCC---------------------------------------------------------
T ss_conf 78978852573797887248888---------------------------------------------------------
Q ss_pred CCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCC-CCCEEECCCCCCCCCCCCHHHCC-CCCCCEEECCCCC
Q ss_conf 157899989156652198751999269877688856867889-84599867883632587022104-9998599922674
Q 001439 496 SHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHK-QLRLLDVSKNNFQGHIPLEIGDI-LSRLTVFNISMNA 573 (1077)
Q Consensus 496 ~~~~~~~~~p~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~~-l~~L~~L~L~~n~ 573 (1077)
++|++++|.+.+..+..+..++ +|+.+++++|.+++.++..++.. +++|++|++++|.
T Consensus 346 --------------------~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~ 405 (768)
T 3rgz_A 346 --------------------KVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNG 405 (768)
T ss_dssp --------------------CEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSE
T ss_pred --------------------CEEECCCCCCCCCCCHHHHHHHCCCCEEECCCCCCCCCCCHHHHHCCCCCCCEEECCCCC
T ss_conf --------------------788484784376230989863227719986278747876766653324776189897784
Q ss_pred CCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCC
Q ss_conf 66468965889988989984688588874067651697575999326647874652465877667143458423456994
Q 001439 574 LDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQ 653 (1077)
Q Consensus 574 l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 653 (1077)
+++.+|..+.++++|+.|++++|.+++.+|..+ ..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+++.+|.
T Consensus 406 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~ 484 (768)
T 3rgz_A 406 FTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSL-GSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPS 484 (768)
T ss_dssp EEEECCGGGGGCTTCCEEECCSSEEESCCCGGG-GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCG
T ss_pred CCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHH-HCCCCCCEEECCCCCCCCCCCHHHCCCCCCEEEEECCCCCCCCCCH
T ss_conf 654248777568987989895884668546777-4499889898978815471897882877732999019951375887
Q ss_pred CCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCC-CCCCC
Q ss_conf 66699999689841685888898443587876589877881247897012589887799424774776799988-87632
Q 001439 654 SLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCY-DFVCI 732 (1077)
Q Consensus 654 ~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~-~~~~L 732 (1077)
.+..+++|++|++++|++.+.+|.+++.+++|++|++++|.+.+.+|..+..+++|+.|++++|.+++.+|..+ ....+
T Consensus 485 ~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~ 564 (768)
T 3rgz_A 485 GLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGK 564 (768)
T ss_dssp GGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTC
T ss_pred HHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCHHHHCCCCH
T ss_conf 88169989989753995189687688568999989897894337488777088989989898884688279578604212
Q ss_pred CEEECCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHCCCCCCCCEEECCC
Q ss_conf 58980587354325856302543552750366658888993224998888898447516545831004999998997868
Q 001439 733 EQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSN 812 (1077)
Q Consensus 733 ~~L~l~~n~~~~~i~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~ 812 (1077)
..+.+.. ..+...+.++... ... ...... -.+.+..+..+..++.++.++++.
T Consensus 565 ~~~~~~~----------------~~~~~~~~~~~~~-~~~-------~~~~~~---~~~~~~~~~~~~~l~~~~~~~l~~ 617 (768)
T 3rgz_A 565 IAANFIA----------------GKRYVYIKNDGMK-KEC-------HGAGNL---LEFQGIRSEQLNRLSTRNPCNITS 617 (768)
T ss_dssp BCCSTTC----------------SCEEEEEECCSCC-TTC-------CSSEEE---EECTTCCGGGGGGGGGTCCSCTTS
T ss_pred HHHHCCC----------------CCCCCCCCCCCCC-CCC-------CCCCCC---CCCCCCCCHHHHCCCCCCCCCCCC
T ss_conf 2320134----------------5421111344432-222-------332221---001355632320023211001133
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCEEECCCCCEEECCCCCCCCCCEEECCCCCC
Q ss_conf 84787789551257521113689999876531233188767942233220010036511001367578786487778957
Q 001439 813 NNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRL 892 (1077)
Q Consensus 813 N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l 892 (1077)
|.+.|.+|..+.+++ .|+.|||++|++
T Consensus 618 ~~~~g~~~~~~~~l~-----------------------------------------------------~L~~LdLs~N~l 644 (768)
T 3rgz_A 618 RVYGGHTSPTFDNNG-----------------------------------------------------SMMFLDMSYNML 644 (768)
T ss_dssp CEEEEECCCSCSSSB-----------------------------------------------------CCCEEECCSSCC
T ss_pred CEECCCCCHHHHCCC-----------------------------------------------------CCCEEECCCCCC
T ss_conf 100462743340335-----------------------------------------------------665797858801
Q ss_pred CCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCC
Q ss_conf 89894132364558656586886998897255698879867688871754388762279976668722462633488310
Q 001439 893 IGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERA 972 (1077)
Q Consensus 893 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~ 972 (1077)
+|.+|.+++++++|+.|+|++|.++|.+|..|+++++|+.|||++|+++|.+|..+..+++|+++|+++|+++|.+|+ .
T Consensus 645 ~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~-~ 723 (768)
T 3rgz_A 645 SGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE-M 723 (768)
T ss_dssp BSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCS-S
T ss_pred CCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCC-C
T ss_conf 555877884141578784868803887896784777899898978802386886775788789787968815560899-6
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 013777744456787897999989999999
Q 001439 973 AQFATFNESSYEGNPFLCGPPLPICISPTT 1002 (1077)
Q Consensus 973 ~~~~~~~~~~~~~N~~~C~~~~~~~~~~~~ 1002 (1077)
.+|.++...+|.|||++||.++. .|....
T Consensus 724 ~~~~~~~~~~~~gN~~Lcg~~l~-~C~~~~ 752 (768)
T 3rgz_A 724 GQFETFPPAKFLNNPGLCGYPLP-RCDPSN 752 (768)
T ss_dssp SSGGGSCGGGGCSCTEEESTTSC-CCCSCC
T ss_pred HHHCCCCHHHHCCCCHHCCCCCC-CCCCCC
T ss_conf 01024897775698321088776-788876
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=583.07 Aligned_cols=658 Identities=28% Similarity=0.392 Sum_probs=366.8
Q ss_pred CCCEEECCCCCCCCH---HHHHHHCCCCCCEEECCCCCCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCHHHH--HHHCC
Q ss_conf 986995899979801---3687522699888848999688865875101104999986997899878951047--54206
Q 001439 130 NLKMLNLVGNLFNNS---ILSSLARLSSLTSLDLSANRLKGSIDIKGPKRLSRLNNLKVFDLSGNLFNNSILS--SLARL 204 (1077)
Q Consensus 130 ~L~~L~Ls~n~l~~~---~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~--~l~~l 204 (1077)
+++.|+++++.+.+. +++.+.++++|+.++++.+.+.. . +..++++++|++|++++|.+.+.+|. .++++
T Consensus 51 ~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~~-l----~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l 125 (768)
T 3rgz_A 51 KVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHING-S----VSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSC 125 (768)
T ss_dssp EEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEEE-C----CCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGC
T ss_pred CEEEEECCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCC-C----CHHHCCCCCCCEEECCCCCCCCCCCCHHHHHCC
T ss_conf 27898778998677557669657316802246786888678-7----033245788998989898578707896787278
Q ss_pred CCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHCCCCCCCCEEEECCCCCCCCCHHHHHCCCCCCCC
Q ss_conf 78857875788788975744330026662650677867987402110377566544301345678402334208999854
Q 001439 205 SSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLN 284 (1077)
Q Consensus 205 ~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~ 284 (1077)
++|++|++++|.+.+.++...+.++++|++|++++|.+++.. +.. ...+..+++|+
T Consensus 126 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~-----------------------~~~~~~l~~L~ 181 (768)
T 3rgz_A 126 SGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGAN-VVG-----------------------WVLSDGCGELK 181 (768)
T ss_dssp TTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEET-HHH-----------------------HHHTTCCTTCC
T ss_pred CCCCEEECCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCC-CHH-----------------------HHHHCCCCCCC
T ss_conf 899989896882677479778563889998989798358858-715-----------------------56643589889
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 65044675545533335677667654377140147552031689973018997577234575888854555565588774
Q 001439 285 TLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHL 364 (1077)
Q Consensus 285 ~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~l~~L 364 (1077)
+|++.+|.+.... .+. .+++|++|++++|.+.+..+. +..+++|
T Consensus 182 ~L~Ls~n~l~~~~-----~~~---------------------------~l~~L~~L~Ls~n~l~~~~~~----l~~l~~L 225 (768)
T 3rgz_A 182 HLAISGNKISGDV-----DVS---------------------------RCVNLEFLDVSSNNFSTGIPF----LGDCSAL 225 (768)
T ss_dssp EEECCSSEEESCC-----BCT---------------------------TCTTCCEEECCSSCCCSCCCB----CTTCCSC
T ss_pred EEECCCCCCCCCC-----CCC---------------------------CCCCCCEEECCCCCCCCCCCC----CCCCCCC
T ss_conf 8989788034657-----845---------------------------478689898928827887711----1269999
Q ss_pred CEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCEEEEECCCCCCCCCCCCCEEECC
Q ss_conf 67983587578974031107998749936797454323786333778765564288732200284323479885187357
Q 001439 365 QELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAE 444 (1077)
Q Consensus 365 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~ 444 (1077)
++|++++|.+++.+|..+.++++|++|++++|.+.+.++.. .+++|++|++++|.++
T Consensus 226 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~---~l~~L~~L~L~~n~l~-------------------- 282 (768)
T 3rgz_A 226 QHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL---PLKSLQYLSLAENKFT-------------------- 282 (768)
T ss_dssp CEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC---CCTTCCEEECCSSEEE--------------------
T ss_pred CEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCC---CCCCCCEEECCCCCCC--------------------
T ss_conf 98979488587816577744888898989888665716724---3687898979178557--------------------
Q ss_pred CCCCEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCHHCCCCCCCCEEEECCCCCCCCCCHHHHHCCCCCCEEECCCCC
Q ss_conf 87410122034667778611037760468888876430002888653999015789998915665219875199926987
Q 001439 445 NNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDS 524 (1077)
Q Consensus 445 ~n~l~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~p~~l~~~~~L~~L~l~~~~~~~~~p~~~~~~~~~L~~L~l~~~~ 524 (1077)
T Consensus 283 -------------------------------------------------------------------------------- 282 (768)
T 3rgz_A 283 -------------------------------------------------------------------------------- 282 (768)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCH
Q ss_conf 76888568678898459986788363258702210499985999226746646896588998898998468858887406
Q 001439 525 LVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPE 604 (1077)
Q Consensus 525 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~ 604 (1077)
+.+|..++..+++|++|++++|.+++..|..|+.+++|++|++++|.+++.+|.
T Consensus 283 --------------------------~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~ 336 (768)
T 3rgz_A 283 --------------------------GEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPM 336 (768)
T ss_dssp --------------------------ESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCH
T ss_pred --------------------------CCCCHHHHHHCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCH
T ss_conf --------------------------725888884468688998968967784236775587766778978852573797
Q ss_pred HHHHCCCCCCEEECCCCCCCCCCCCCCCCCC-CCCEEECCCCCCCCCCCCCCCC--CCCCCEEECCCCCCCCCCCCCCCC
Q ss_conf 7651697575999326647874652465877-6671434584234569946669--999968984168588889844358
Q 001439 605 HLAMGCVSLRSLALSNNNLEGHMFSRNFNLT-NLIWLQLEGNHFVGEIPQSLSK--CSSLQGLFLSNNSLSGKIPRWLGN 681 (1077)
Q Consensus 605 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~--l~~L~~L~l~~n~l~~~~p~~l~~ 681 (1077)
..+..+++|+.|++++|.+.+..+..+..++ +|+.|++++|.+.+..+..+.. +++|+.|++++|.+.+..|.++..
T Consensus 337 ~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~ 416 (768)
T 3rgz_A 337 DTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSN 416 (768)
T ss_dssp HHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGG
T ss_pred HHHHCCCCCCEEECCCCCCCCCCCHHHHHHHCCCCEEECCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCCHHHHC
T ss_conf 88724888878848478437623098986322771998627874787676665332477618989778465424877756
Q ss_pred CCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCC-CCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 7876589877881247897012589887799424774776799988-876325898058735432585630254355275
Q 001439 682 LTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCY-DFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMIL 760 (1077)
Q Consensus 682 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~-~~~~L~~L~l~~n~~~~~i~~~~~~~~~~L~~L 760 (1077)
+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+ .+++|+.+++++|.+.+.+|. .+.++++|+.|
T Consensus 417 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~-~l~~l~~L~~L 495 (768)
T 3rgz_A 417 CSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPS-GLSNCTNLNWI 495 (768)
T ss_dssp CTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCG-GGGGCTTCCEE
T ss_pred CCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHCCCCCCEEEEECCCCCCCCCCH-HHHCCCCCCEE
T ss_conf 89879898958846685467774499889898978815471897882877732999019951375887-88169989989
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 03666588889932249988888984475165458310049999989978688478778955125752111368999987
Q 001439 761 DLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQP 840 (1077)
Q Consensus 761 ~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~ 840 (1077)
++++|++++.+|.+++.+++|++|++++|++++.+|..+..+++|+.|++++|+++|.+|..+.............
T Consensus 496 ~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~---- 571 (768)
T 3rgz_A 496 SLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIA---- 571 (768)
T ss_dssp ECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTC----
T ss_pred ECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCHHHHCCCCHHHHHCCC----
T ss_conf 7539951896876885689999898978943374887770889899898988846882795786042122320134----
Q ss_pred CCCCEEECCCCCCCCCC-CCCCCEEECCCCCEEECCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCC
Q ss_conf 65312331887679422-33220010036511001367578786487778957898941323645586565868869988
Q 001439 841 FETSFVIMGGMDVDPKK-QILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGP 919 (1077)
Q Consensus 841 ~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 919 (1077)
...+.+.......... .....+.+ .+...... .....+..++++.|.+.|.+|..+..+++|+.|||++|+++|.
T Consensus 572 -~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ 647 (768)
T 3rgz_A 572 -GKRYVYIKNDGMKKECHGAGNLLEF--QGIRSEQL-NRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGY 647 (768)
T ss_dssp -SCEEEEEECCSCCTTCCSSEEEEEC--TTCCGGGG-GGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSC
T ss_pred -CCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCHHH-HCCCCCCCCCCCCCEECCCCCHHHHCCCCCCEEECCCCCCCCC
T ss_conf -5421111344432222332221001--35563232-0023211001133100462743340335665797858801555
Q ss_pred CCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 97255698879867688871754388762279976668722462633488310013777744456787897
Q 001439 920 IPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESSYEGNPFLC 990 (1077)
Q Consensus 920 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~~N~~~C 990 (1077)
+|..|+++++|+.|+|++|+++|.+|..++.+++|+.||+++|+++|.+|..+..+..+..+++.+|+...
T Consensus 648 ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g 718 (768)
T 3rgz_A 648 IPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSG 718 (768)
T ss_dssp CCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEE
T ss_pred CCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCC
T ss_conf 87788414157878486880388789678477789989897880238688677578878978796881556
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=1.00 E-value=1 Score=480.34 Aligned_cols=135 Identities=24% Similarity=0.265 Sum_probs=89.1
Q ss_pred CCCCEEECCCCCCCCCCCCHHHHHCCCCCCCCEEECCCCCCCCHHHHHHHCCCCCCEEECCCCCCCCCCCCCCHHHCCCC
Q ss_conf 67767648999888641001333203899986995899979801368752269988884899968886587510110499
Q 001439 101 QQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLARLSSLTSLDLSANRLKGSIDIKGPKRLSRL 180 (1077)
Q Consensus 101 ~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l 180 (1077)
+++++|++++|.+.+..+. .+.++++|++|++++|.+++..|..++++++|++|++++|.+.+..+ ..++++
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~----~~~~~l 96 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAA----NFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSD----KTFAFC 96 (680)
T ss_dssp TTCSEEECCSSCCCCCCGG----GGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCT----TTTTTC
T ss_pred CCCCEEECCCCCCCCCCHH----HHHCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCH----HHHCCC
T ss_conf 8876888989977875978----87178767588788996485697787406676888899985675685----453038
Q ss_pred CCCCEEECCCCCCCCHHHHHHHCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCC
Q ss_conf 9986997899878951047542067885787578878897574433002666265067786798
Q 001439 181 NNLKVFDLSGNLFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDN 244 (1077)
Q Consensus 181 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~ 244 (1077)
++|++|++++|.+.+..+..++++++|++|++++|.+.+. ....+..+++|++|++++|.++.
T Consensus 97 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~ 159 (680)
T 1ziw_A 97 TNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSST-KLGTQVQLENLQELLLSNNKIQA 159 (680)
T ss_dssp TTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCC-CCCSSSCCTTCCEEECCSSCCCC
T ss_pred CCCCEEECCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCC-CCHHHCCCCCCCEEECCCCCCCC
T ss_conf 8889898989966853966741567888898989952466-72111245567779745884365
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=1.00 E-value=1 Score=475.45 Aligned_cols=589 Identities=23% Similarity=0.223 Sum_probs=260.6
Q ss_pred CCCCEEECCCCCCCCHHHHHHHCCCCCCEEECCCCCCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCHHHHHHHCCCCCC
Q ss_conf 99869958999798013687522699888848999688865875101104999986997899878951047542067885
Q 001439 129 SNLKMLNLVGNLFNNSILSSLARLSSLTSLDLSANRLKGSIDIKGPKRLSRLNNLKVFDLSGNLFNNSILSSLARLSSLR 208 (1077)
Q Consensus 129 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~ 208 (1077)
+++++|++++|.+++..+..++++++|++|++++|.+.+..+ ..++++++|++|++++|.++...+..|+++++|+
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~ 100 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEP----ELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLT 100 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCT----THHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCS
T ss_pred CCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCH----HHHHCCCCCCEEECCCCCCCCCCHHHHCCCCCCC
T ss_conf 887688898997787597887178767588788996485697----7874066768888999856756854530388889
Q ss_pred EEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHCCCCCCCCEEEECCCCCCCCCHHHHHCCCCCCCCEECC
Q ss_conf 78757887889757443300266626506778679874021103775665443013456784023342089998546504
Q 001439 209 SLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDL 288 (1077)
Q Consensus 209 ~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l 288 (1077)
+|++++|.+. .++...+..+++|++|++++|.++... +.
T Consensus 101 ~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~--------------------------------------- 139 (680)
T 1ziw_A 101 ELHLMSNSIQ-KIKNNPFVKQKNLITLDLSHNGLSSTK-LG--------------------------------------- 139 (680)
T ss_dssp EEECCSSCCC-CCCSCTTTTCTTCCEEECCSSCCSCCC-CC---------------------------------------
T ss_pred EEECCCCCCC-CCCHHHCCCCCCCCEEECCCCCCCCCC-CH---------------------------------------
T ss_conf 8989899668-539667415678888989899524667-21---------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 46755455333356776676543771401475520316899730189975772345758888545555655887746798
Q 001439 289 SYNNFTETVTTTTQGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELH 368 (1077)
Q Consensus 289 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~l~~L~~L~ 368 (1077)
.+..+++|++|+
T Consensus 140 --------------------------------------------------------------------~~~~l~~L~~L~ 151 (680)
T 1ziw_A 140 --------------------------------------------------------------------TQVQLENLQELL 151 (680)
T ss_dssp --------------------------------------------------------------------SSSCCTTCCEEE
T ss_pred --------------------------------------------------------------------HHCCCCCCCEEE
T ss_conf --------------------------------------------------------------------112455677797
Q ss_pred CCCCCCCCCCHHHHC--CCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCEEEEECCCCCCCCCCCCCEEECCCC
Q ss_conf 358757897403110--799874993679745432378633377876556428873220028432347988518735787
Q 001439 369 MADNDLRGSLPWCLA--NMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENN 446 (1077)
Q Consensus 369 L~~n~l~~~~~~~l~--~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n 446 (1077)
+++|.+++..+..+. .+++|+.|++++|.+.+.. +..+..+++|+.+.+.++.+......
T Consensus 152 L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~l~~~~l~~~~~~----------------- 213 (680)
T 1ziw_A 152 LSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFS-PGCFHAIGRLFGLFLNNVQLGPSLTE----------------- 213 (680)
T ss_dssp CCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBC-TTGGGGSSEECEEECTTCCCHHHHHH-----------------
T ss_pred CCCCCCCCCCHHHHHCCCCCCCCEEECCCCCCCCCC-HHHHHHHHHHHHHHCCCCCCCHHHHH-----------------
T ss_conf 458843652978862446663217988898256558-15553223445543056646805677-----------------
Q ss_pred CCEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCHHCCCCCCCCEEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCC
Q ss_conf 41012203466777861103776046888887643000288865399901578999891566521987519992698776
Q 001439 447 EINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLV 526 (1077)
Q Consensus 447 ~l~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~p~~l~~~~~L~~L~l~~~~~~~~~p~~~~~~~~~L~~L~l~~~~~~ 526 (1077)
.++..+ ..++|+.+++++|.+.+..|.
T Consensus 214 --------------------------------~~~~~l-~~~~L~~L~L~~n~l~~~~~~-------------------- 240 (680)
T 1ziw_A 214 --------------------------------KLCLEL-ANTSIRNLSLSNSQLSTTSNT-------------------- 240 (680)
T ss_dssp --------------------------------HHHHHH-TTSCCCEEECTTSCCCEECTT--------------------
T ss_pred --------------------------------HHHHHH-HHCCCCEEECCCCCCCCCCHH--------------------
T ss_conf --------------------------------787775-315100887457743646866--------------------
Q ss_pred CCCCCCCCCC--CCCCEEECCCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCH
Q ss_conf 8885686788--98459986788363258702210499985999226746646896588998898998468858887406
Q 001439 527 GPFRLPIHSH--KQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPE 604 (1077)
Q Consensus 527 ~~~~~~~~~~--~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~ 604 (1077)
.+..+ ++|+.|++++|.+++..+..+ ..+++|+.|++++|.+.+..+..|.++++|+.|++++|...+.++.
T Consensus 241 -----~~~~l~~~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~ 314 (680)
T 1ziw_A 241 -----TFLGLKWTNLTMLDLSYNNLNVVGNDSF-AWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISL 314 (680)
T ss_dssp -----TTGGGGGSCCCEEECTTSCCCEECTTTT-TTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC----
T ss_pred -----HHHCCCCCCCCEEECCCCCCCCCCCCCC-CCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCHHHHCCCCC
T ss_conf -----7514676778887787887675680211-6741056855778856765865626788855773633132133333
Q ss_pred HHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCC--CCCCCCCC
Q ss_conf 7651697575999326647874652465877667143458423456994666999996898416858888--98443587
Q 001439 605 HLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGK--IPRWLGNL 682 (1077)
Q Consensus 605 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~p~~l~~l 682 (1077)
. .+.......+..+++|+.|++++|.+.+..+..|..+++|++|++++|.+... .+..+..+
T Consensus 315 ~----------------~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~ 378 (680)
T 1ziw_A 315 A----------------SLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSL 378 (680)
T ss_dssp ------------------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGG
T ss_pred C----------------CCCCCCHHHCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCHHHHHCCHHHHCCC
T ss_conf 5----------------545438656246777888879898268788557406568728988798014432353220245
Q ss_pred --CCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCC-CC-CCCCCCEEECCCCCCCCCCCCCCCCCCCCCC
Q ss_conf --8765898778812478970125898877994247747767999-88-8763258980587354325856302543552
Q 001439 683 --TVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPS-CY-DFVCIEQVHLSKNMLHGQLKEGTFFNCLTLM 758 (1077)
Q Consensus 683 --~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~-~~-~~~~L~~L~l~~n~~~~~i~~~~~~~~~~L~ 758 (1077)
+.|+.|++++|++.+..|..|..+++|+.|++++|.+.+.+|. .+ .+++|+.+++++|.+.+..+. .|..+++|+
T Consensus 379 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~~~~L~ 457 (680)
T 1ziw_A 379 AHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRN-SFALVPSLQ 457 (680)
T ss_dssp TTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTT-TTTTCTTCC
T ss_pred CCCCCCEEECCCCCCCEECHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEECHH-HHHCCCCCC
T ss_conf 5686766889999777677544207788888867787575435755325754612784489975422764-550075431
Q ss_pred EECCCCCCCC--CCCCCCCCCCCCCCEEECCCCCCCCCCCHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 7503666588--88993224998888898447516545831004999998997868847877895512575211136899
Q 001439 759 ILDLSYNHLN--GNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGS 836 (1077)
Q Consensus 759 ~L~L~~n~l~--~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~ 836 (1077)
.|++++|.+. +..|..+..+++|+.|++++|++++..+..+..+++|+.|++++|.+++..+..+.....
T Consensus 458 ~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~-------- 529 (680)
T 1ziw_A 458 RLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPI-------- 529 (680)
T ss_dssp EEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCC--------
T ss_pred CCHHCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCC--------
T ss_conf 011014644225667764555787899989999877679446345534688858899730000000467741--------
Q ss_pred CCCCCCCCEEECCCCCCCCCCCCCCCEEECCCCCEEECCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCC
Q ss_conf 99876531233188767942233220010036511001367578786487778957898941323645586565868869
Q 001439 837 SLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNL 916 (1077)
Q Consensus 837 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l 916 (1077)
..-.....|+.|+|++|+++...+..|.++++|+.|+|++|++
T Consensus 530 -------------------------------------~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l 572 (680)
T 1ziw_A 530 -------------------------------------YFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNL 572 (680)
T ss_dssp -------------------------------------CTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred -------------------------------------HHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCCCEEECCCCCC
T ss_conf -------------------------------------4233799888888999978877977734666752238999977
Q ss_pred CCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCC-CCCCCCEEECCCCCCCCCCC
Q ss_conf 988972556988798676888717543887622-79976668722462633488
Q 001439 917 AGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLV-ELNTLAVFSVAYNNLSGKIP 969 (1077)
Q Consensus 917 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~l~ls~N~l~~~~p 969 (1077)
++..+..|.++++|+.|++++|++++..|..+. .+++|+.+++++|++.|.++
T Consensus 573 ~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~ 626 (680)
T 1ziw_A 573 NTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE 626 (680)
T ss_dssp CCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred CCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCCEEECCCCCCCCCCC
T ss_conf 767976837898888898999968705966830114665779831897025776
No 5
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=456.47 Aligned_cols=317 Identities=25% Similarity=0.250 Sum_probs=168.2
Q ss_pred CCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 99859992267466468965889988989984688588874067651697575999326647874652465877667143
Q 001439 562 SRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQ 641 (1077)
Q Consensus 562 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 641 (1077)
++++.|++++|.+.+..+..|..+++|+.|++++|.+. .++...+.++++|+.|++++|.+.+..+..+..+++|+.|+
T Consensus 266 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 344 (844)
T 3j0a_A 266 SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKIN-KIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYID 344 (844)
T ss_dssp SCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCC-EECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEE
T ss_pred CCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCC-CCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEE
T ss_conf 78618989799455158634525899999989798189-87968836888999898989978851878846899999898
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCC
Q ss_conf 45842345699466699999689841685888898443587876589877881247897012589887799424774776
Q 001439 642 LEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISG 721 (1077)
Q Consensus 642 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 721 (1077)
+++|.+....+..|..+++|+.|++++|.+.+ . ..+++|+.+++++|.++
T Consensus 345 L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~------------------------i-----~~~~~L~~L~l~~N~l~- 394 (844)
T 3j0a_A 345 LQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT------------------------I-----HFIPSIPDIFLSGNKLV- 394 (844)
T ss_dssp CCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC------------------------C-----SSCCSCSEEEEESCCCC-
T ss_pred CCCCCCCCCCHHHHCCCCCCCEEECCCCCCCC------------------------C-----CCCCCCCHHCCCCCCCC-
T ss_conf 98998776286661378889998898997786------------------------1-----68898232005899723-
Q ss_pred CCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCC-CCCCCCCCCCEEECCCCCCCCCCCH-HC
Q ss_conf 799988876325898058735432585630254355275036665888899-3224998888898447516545831-00
Q 001439 722 SLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIP-DRVDGLSQLSYLILAHNNLEGEVPI-QL 799 (1077)
Q Consensus 722 ~~p~~~~~~~L~~L~l~~n~~~~~i~~~~~~~~~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~-~~ 799 (1077)
.+|. . ..+++.+++++|++++... ..+..+++|+.|++++|++++..+. .+
T Consensus 395 -----------------------~l~~-~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 447 (844)
T 3j0a_A 395 -----------------------TLPK-I---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTP 447 (844)
T ss_dssp -----------------------CCCC-C---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSS
T ss_pred -----------------------CCCC-C---CCCCCEEECCCCCCCCCCHHHHHHCCCCCCEEECCCCCCCCCCCCCCC
T ss_conf -----------------------1455-4---554312214567534575566651277666666778712555543335
Q ss_pred CCCCCCCEEECCCCCCCCCCCC-----CCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCEEECCCCCEEEC
Q ss_conf 4999998997868847877895-----51257521113689999876531233188767942233220010036511001
Q 001439 800 CRLNQLQLLDLSNNNLHGHIPS-----CFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTY 874 (1077)
Q Consensus 800 ~~l~~L~~L~Ls~N~l~~~~p~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 874 (1077)
..+++|+.|++++|.+++..+. .|..+
T Consensus 448 ~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l------------------------------------------------ 479 (844)
T 3j0a_A 448 SENPSLEQLFLGENMLQLAWETELCWDVFEGL------------------------------------------------ 479 (844)
T ss_dssp CSCTTCCBCEEESCCCSSSCCSCCCSSCSSCB------------------------------------------------
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCC------------------------------------------------
T ss_conf 66873100247777364410135535554475------------------------------------------------
Q ss_pred CCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 36757878648777895789894132364558656586886998897255698879867688871754388762279976
Q 001439 875 QGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTL 954 (1077)
Q Consensus 875 ~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 954 (1077)
..|+.|+|++|++++..|..|.++++|+.|+|++|++++.+|..+. ++|+.||+++|++++.+|..+. +|
T Consensus 480 -----~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~~---~L 549 (844)
T 3j0a_A 480 -----SHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVFV---SL 549 (844)
T ss_dssp -----CCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCCS---SC
T ss_pred -----CCCCEEECCCCCCCCCCHHHCCCHHHHHEEECCCCCCCCCCHHHHH--CCCCEEECCCCCCCCCCHHHHC---CC
T ss_conf -----5365777889856553955704501221569999978745710110--0455888988847888966837---76
Q ss_pred CEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 668722462633488310013777744456787897999989999
Q 001439 955 AVFSVAYNNLSGKIPERAAQFATFNESSYEGNPFLCGPPLPICIS 999 (1077)
Q Consensus 955 ~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~~N~~~C~~~~~~~~~ 999 (1077)
+.+++++|++.|.++. .+|..+....+...||.+....|.
T Consensus 550 ~~l~l~~Np~~C~c~~-----~~f~~~~~~~~~~~~~~~~~~~C~ 589 (844)
T 3j0a_A 550 SVLDITHNKFICECEL-----STFINWLNHTNVTIAGPPADIYCV 589 (844)
T ss_dssp CEEEEEEECCCCSSSC-----CSHHHHHHHTTTTTCCCGGGCCCS
T ss_pred CEEEECCCCCCCCCCC-----HHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 8899319970253661-----899999973685302660027557
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=1.00 E-value=1 Score=430.62 Aligned_cols=304 Identities=25% Similarity=0.269 Sum_probs=175.2
Q ss_pred CCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEC
Q ss_conf 98599922674664689658899889899846885888740676516975759993266478746524658776671434
Q 001439 563 RLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQL 642 (1077)
Q Consensus 563 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 642 (1077)
+++.+++++|.+++..+..|..+++|+.|++++|.++ .+|..+ ..+++|+.|++++|.+.+..+..+..+++|+.|++
T Consensus 255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 332 (606)
T 3t6q_A 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGL-VGLSTLKKLVLSANKFENLCQISASNFPSLTHLSI 332 (606)
T ss_dssp EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSC-CSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEEC
T ss_pred CEEEEEEECCCCCCCCHHHHCCCCCCCEEECCCCCCC-CCCHHH-CCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEEC
T ss_conf 5059994457658557777445667888956288267-778214-16546888977168768676023301576898889
Q ss_pred CCCCCCCCCCC-CCCCCCCCCEEECCCCCCCCCC--CCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCC
Q ss_conf 58423456994-6669999968984168588889--84435878765898778812478970125898877994247747
Q 001439 643 EGNHFVGEIPQ-SLSKCSSLQGLFLSNNSLSGKI--PRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNI 719 (1077)
Q Consensus 643 ~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~--p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 719 (1077)
++|.+.+.++. .+..+++|++|++++|.+.+.. +..+..+++|++|++++|.+.+..+..+..+
T Consensus 333 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l------------- 399 (606)
T 3t6q_A 333 KGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKEC------------- 399 (606)
T ss_dssp CSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTC-------------
T ss_pred CCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCHHCCCCCCCCEEECCCCCCCCCCHHHHCCC-------------
T ss_conf 8997444346245506675898878899666456752210567888989898996775788873477-------------
Q ss_pred CCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCC-CCCCCCCCCEEECCCCCCCCCCCHH
Q ss_conf 767999888763258980587354325856302543552750366658888993-2249988888984475165458310
Q 001439 720 SGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPD-RVDGLSQLSYLILAHNNLEGEVPIQ 798 (1077)
Q Consensus 720 ~~~~p~~~~~~~L~~L~l~~n~~~~~i~~~~~~~~~~L~~L~L~~n~l~~~~p~-~~~~l~~L~~L~L~~N~l~~~~p~~ 798 (1077)
++|+.|++++|.+.+..+. .+..+++|++|++++|.+.+..|..
T Consensus 400 -----------------------------------~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 444 (606)
T 3t6q_A 400 -----------------------------------PQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQL 444 (606)
T ss_dssp -----------------------------------TTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTT
T ss_pred -----------------------------------CCCCEEECCCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCHHH
T ss_conf -----------------------------------457768788886777565212417655888989898557768778
Q ss_pred CCCCCCCCEEECCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCEEECCCCCEEECC
Q ss_conf 049999989978688478778---95512575211136899998765312331887679422332200100365110013
Q 001439 799 LCRLNQLQLLDLSNNNLHGHI---PSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQ 875 (1077)
Q Consensus 799 ~~~l~~L~~L~Ls~N~l~~~~---p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 875 (1077)
+..+++|+.|++++|.+.+.. +..+..+
T Consensus 445 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l------------------------------------------------- 475 (606)
T 3t6q_A 445 FDGLPALQHLNLQGNHFPKGNIQKTNSLQTL------------------------------------------------- 475 (606)
T ss_dssp TTTCTTCCEEECTTCBCGGGEECSSCGGGGC-------------------------------------------------
T ss_pred HHCCCCCCEEECCCCCCCCCCCCCCHHHCCC-------------------------------------------------
T ss_conf 7378878889898998885434543124048-------------------------------------------------
Q ss_pred CCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf 67578786487778957898941323645586565868869988972556988798676888717543887622799766
Q 001439 876 GRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLA 955 (1077)
Q Consensus 876 ~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 955 (1077)
..|+.|++++|.+++..|..|..+++|+.|+|++|.+++.+|..|.+++.| .|++++|++++.+|..+..+++|+
T Consensus 476 ----~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~ 550 (606)
T 3t6q_A 476 ----GRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQR 550 (606)
T ss_dssp ----TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSS
T ss_pred ----CCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCC-EEECCCCCCCCCCHHHCCCCCCCC
T ss_conf ----876688799996670686463265678889898980686896684756651-898768941426876625677878
Q ss_pred EEECCCCCCCCCCCC
Q ss_conf 687224626334883
Q 001439 956 VFSVAYNNLSGKIPE 970 (1077)
Q Consensus 956 ~l~ls~N~l~~~~p~ 970 (1077)
.+++++|++.|.++.
T Consensus 551 ~L~l~~N~~~c~c~~ 565 (606)
T 3t6q_A 551 TINLRQNPLDCTCSN 565 (606)
T ss_dssp EEECTTCCEECSGGG
T ss_pred EEECCCCCCCCCCCC
T ss_conf 896779986166775
No 7
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=1.00 E-value=1 Score=429.74 Aligned_cols=190 Identities=24% Similarity=0.271 Sum_probs=86.3
Q ss_pred CCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCH-HCCCCCCCCEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 302543552750366658888993224998888898447516545831-0049999989978688478778955125752
Q 001439 750 TFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPI-QLCRLNQLQLLDLSNNNLHGHIPSCFDNTTL 828 (1077)
Q Consensus 750 ~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~ 828 (1077)
.+.++++|+.|++++|.+.+..|..+..+++|++|++++|++.+..+. .+..+++|+.|++++|.+.+..|..+..++
T Consensus 371 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~- 449 (606)
T 3t6q_A 371 QLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLP- 449 (606)
T ss_dssp TTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCT-
T ss_pred HCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCHHHHHCCC-
T ss_conf 1056788898989899677578887347745776878888677756521241765588898989855776877873788-
Q ss_pred CCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCEEECCCCCEEECCCCCCCCCCEEECCCCCCCCC---CCCCCCCCCC
Q ss_conf 1113689999876531233188767942233220010036511001367578786487778957898---9413236455
Q 001439 829 HERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGH---IPPQIGNLTK 905 (1077)
Q Consensus 829 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~---~p~~~~~l~~ 905 (1077)
.|+.|++++|.+++. .+..+..+++
T Consensus 450 ----------------------------------------------------~L~~L~L~~n~l~~~~~~~~~~~~~l~~ 477 (606)
T 3t6q_A 450 ----------------------------------------------------ALQHLNLQGNHFPKGNIQKTNSLQTLGR 477 (606)
T ss_dssp ----------------------------------------------------TCCEEECTTCBCGGGEECSSCGGGGCTT
T ss_pred ----------------------------------------------------CCCEEECCCCCCCCCCCCCCHHHCCCCC
T ss_conf ----------------------------------------------------7888989899888543454312404887
Q ss_pred CCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 86565868869988972556988798676888717543887622799766687224626334883100137777444567
Q 001439 906 IQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESSYEG 985 (1077)
Q Consensus 906 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~~ 985 (1077)
|+.|++++|.+++.+|..|..+++|+.|++++|++++..|..+..++.| .+++++|++++.+|..+..+..+..+++.+
T Consensus 478 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 556 (606)
T 3t6q_A 478 LEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQ 556 (606)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTT
T ss_pred CCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCC-EEECCCCCCCCCCHHHCCCCCCCCEEECCC
T ss_conf 6688799996670686463265678889898980686896684756651-898768941426876625677878896779
Q ss_pred CCCCCCCC
Q ss_conf 87897999
Q 001439 986 NPFLCGPP 993 (1077)
Q Consensus 986 N~~~C~~~ 993 (1077)
||+.|+|+
T Consensus 557 N~~~c~c~ 564 (606)
T 3t6q_A 557 NPLDCTCS 564 (606)
T ss_dssp CCEECSGG
T ss_pred CCCCCCCC
T ss_conf 98616677
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=1.00 E-value=1 Score=421.58 Aligned_cols=167 Identities=26% Similarity=0.306 Sum_probs=116.5
Q ss_pred CCCCCCCCCEECCCCCCCCCCCC-CCCCCCCCCCEEECCCCCCCCCCCHHCCCCCCCCEEECCCCCCCCC-CCCCCCCCC
Q ss_conf 30254355275036665888899-3224998888898447516545831004999998997868847877-895512575
Q 001439 750 TFFNCLTLMILDLSYNHLNGNIP-DRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGH-IPSCFDNTT 827 (1077)
Q Consensus 750 ~~~~~~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~~~ 827 (1077)
.|..+++|+.|++++|++.+..| ..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+. +|..+..++
T Consensus 394 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 473 (606)
T 3vq2_A 394 NFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTT 473 (606)
T ss_dssp CCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCT
T ss_pred HCCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHHCCCC
T ss_conf 40688888965898870587537645646213788989689787433555347787898989898379854677604578
Q ss_pred CCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCEEECCCCCEEECCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf 21113689999876531233188767942233220010036511001367578786487778957898941323645586
Q 001439 828 LHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQ 907 (1077)
Q Consensus 828 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 907 (1077)
.|+.|++++|.+++..|..|.++++|+
T Consensus 474 -----------------------------------------------------~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 500 (606)
T 3vq2_A 474 -----------------------------------------------------NLTFLDLSKCQLEQISWGVFDTLHRLQ 500 (606)
T ss_dssp -----------------------------------------------------TCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred -----------------------------------------------------CCCEEECCCCCCCCCCHHHHCCCCCCC
T ss_conf -----------------------------------------------------899898988857764865615464689
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCC-CCCEEECCCCCCCCCCCC
Q ss_conf 565868869988972556988798676888717543887622799-766687224626334883
Q 001439 908 TLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELN-TLAVFSVAYNNLSGKIPE 970 (1077)
Q Consensus 908 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~l~ls~N~l~~~~p~ 970 (1077)
.|+|++|.+++.+|..|..+++|+.|++++|+++ .+|..+..++ +|+.+++++|++.|.++.
T Consensus 501 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~ 563 (606)
T 3vq2_A 501 LLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEH 563 (606)
T ss_dssp EEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred EEECCCCCCCCCCHHHCCCCCCCCEEECCCCCCC-CCCHHHHHHCCCCCEEECCCCCCCCCCCC
T ss_conf 8989899578748777068876898889898376-66876752102174887628986647764
No 9
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=420.35 Aligned_cols=295 Identities=26% Similarity=0.230 Sum_probs=235.2
Q ss_pred CCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEC
Q ss_conf 75759993266478746524658776671434584234569946669999968984168588889844358787658987
Q 001439 611 VSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIM 690 (1077)
Q Consensus 611 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l 690 (1077)
++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..|..+++|+.|++++|.+.+..|..+..+++|+.|++
T Consensus 266 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 345 (844)
T 3j0a_A 266 SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDL 345 (844)
T ss_dssp SCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEEC
T ss_pred CCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEEC
T ss_conf 78618989799455158634525899999989798189879688368889998989899788518788468999998989
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCC
Q ss_conf 78812478970125898877994247747767999888763258980587354325856302543552750366658888
Q 001439 691 PKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGN 770 (1077)
Q Consensus 691 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~i~~~~~~~~~~L~~L~L~~n~l~~~ 770 (1077)
++|.+.+..+..|..+++|+.|++++|.+++ +..+++|+.|++++|+++ .
T Consensus 346 ~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-----------------------------i~~~~~L~~L~l~~N~l~-~ 395 (844)
T 3j0a_A 346 QKNHIAIIQDQTFKFLEKLQTLDLRDNALTT-----------------------------IHFIPSIPDIFLSGNKLV-T 395 (844)
T ss_dssp CSCCCCCCCSSCSCSCCCCCEEEEETCCSCC-----------------------------CSSCCSCSEEEEESCCCC-C
T ss_pred CCCCCCCCCHHHHCCCCCCCEEECCCCCCCC-----------------------------CCCCCCCCHHCCCCCCCC-C
T ss_conf 8998776286661378889998898997786-----------------------------168898232005899723-1
Q ss_pred CCCCCCCCCCCCEEECCCCCCCCCC-CHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECC
Q ss_conf 9932249988888984475165458-310049999989978688478778955125752111368999987653123318
Q 001439 771 IPDRVDGLSQLSYLILAHNNLEGEV-PIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMG 849 (1077)
Q Consensus 771 ~p~~~~~l~~L~~L~L~~N~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 849 (1077)
+|.. ..+++.|++++|++++.. +..+..+++|+.|++++|.+++..+....
T Consensus 396 l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~------------------------- 447 (844)
T 3j0a_A 396 LPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTP------------------------- 447 (844)
T ss_dssp CCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSS-------------------------
T ss_pred CCCC---CCCCCEEECCCCCCCCCCHHHHHHCCCCCCEEECCCCCCCCCCCCCCC-------------------------
T ss_conf 4554---554312214567534575566651277666666778712555543335-------------------------
Q ss_pred CCCCCCCCCCCCCEEECCCCCEEECCCCCCCCCCEEECCCCCCC-----CCCCCCCCCCCCCCEEECCCCCCCCCCCCCC
Q ss_conf 87679422332200100365110013675787864877789578-----9894132364558656586886998897255
Q 001439 850 GMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLI-----GHIPPQIGNLTKIQTLNLSHNNLAGPIPSTF 924 (1077)
Q Consensus 850 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~-----~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 924 (1077)
.....|+.|+|++|.++ +..+..|.++++|+.|+|++|.+++.+|..|
T Consensus 448 ---------------------------~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 500 (844)
T 3j0a_A 448 ---------------------------SENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVF 500 (844)
T ss_dssp ---------------------------CSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSS
T ss_pred ---------------------------CCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHC
T ss_conf ---------------------------66873100247777364410135535554475536577788985655395570
Q ss_pred CCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 69887986768887175438876227997666872246263348831001377774445678789799998
Q 001439 925 SNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESSYEGNPFLCGPPLP 995 (1077)
Q Consensus 925 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~~N~~~C~~~~~ 995 (1077)
..+++|+.|+|++|++++..|..+. ++|+.|++++|++++.+|.. +..+..+++.+||+.|+|++.
T Consensus 501 ~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~---~~~L~~l~l~~Np~~C~c~~~ 566 (844)
T 3j0a_A 501 SHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDV---FVSLSVLDITHNKFICECELS 566 (844)
T ss_dssp SSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC---CSSCCEEEEEEECCCCSSSCC
T ss_pred CCHHHHHEEECCCCCCCCCCHHHHH--CCCCEEECCCCCCCCCCHHH---HCCCCEEEECCCCCCCCCCCH
T ss_conf 4501221569999978745710110--04558889888478889668---377688993199702536618
No 10
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=1.00 E-value=1 Score=410.69 Aligned_cols=142 Identities=23% Similarity=0.300 Sum_probs=78.4
Q ss_pred CCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCC-CCCHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 30254355275036665888899322499888889844751654-58310049999989978688478778955125752
Q 001439 750 TFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEG-EVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTL 828 (1077)
Q Consensus 750 ~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~ 828 (1077)
.|.++++|+.|++++|.+.+..|..+..+++|++|++++|.+++ ..|..+..+++|+.|++++|.+++..|..+.+++
T Consensus 419 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~- 497 (606)
T 3vq2_A 419 AFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLH- 497 (606)
T ss_dssp TTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCT-
T ss_pred HHHCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCC-
T ss_conf 5646213788989689787433555347787898989898379854677604578899898988857764865615464-
Q ss_pred CCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCEEECCCCCEEECCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 11136899998765312331887679422332200100365110013675787864877789578989413236455865
Q 001439 829 HERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQT 908 (1077)
Q Consensus 829 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 908 (1077)
.|+.|++++|++++.+|..|.++++|+.
T Consensus 498 ----------------------------------------------------~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 525 (606)
T 3vq2_A 498 ----------------------------------------------------RLQLLNMSHNNLLFLDSSHYNQLYSLST 525 (606)
T ss_dssp ----------------------------------------------------TCCEEECCSSCCSCEEGGGTTTCTTCCE
T ss_pred ----------------------------------------------------CCCEEECCCCCCCCCCHHHCCCCCCCCE
T ss_conf ----------------------------------------------------6898989899578748777068876898
Q ss_pred EECCCCCCCCCCCCCCCCCC-CCCEEECCCCCCCCCCC
Q ss_conf 65868869988972556988-79867688871754388
Q 001439 909 LNLSHNNLAGPIPSTFSNLR-NIESLDLSYNKLSWKIP 945 (1077)
Q Consensus 909 L~Ls~N~l~~~~p~~~~~l~-~L~~L~Ls~N~l~~~~p 945 (1077)
|+|++|+++ .+|..+..++ +|+.|++++|.+.+..+
T Consensus 526 L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~ 562 (606)
T 3vq2_A 526 LDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICE 562 (606)
T ss_dssp EECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred EECCCCCCC-CCCHHHHHHCCCCCEEECCCCCCCCCCC
T ss_conf 889898376-6687675210217488762898664776
Done!