Query 001440
Match_columns 1077
No_of_seqs 744 out of 6600
Neff 9.4
Searched_HMMs 29240
Date Tue Mar 26 16:41:36 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001440.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_741-745//hhsearch_pdb/001440hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 1.0 1 1 759.0 39.8 690 28-735 4-754 (768)
2 3rgz_A Protein brassinosteroid 1.0 1 1 609.6 32.0 590 102-697 94-741 (768)
3 1ziw_A TOLL-like receptor 3; i 1.0 1 1 537.0 44.1 579 108-701 25-627 (680)
4 1ziw_A TOLL-like receptor 3; i 1.0 1 1 533.8 43.0 567 84-673 26-623 (680)
5 4eco_A Uncharacterized protein 1.0 1 1 486.7 22.8 492 33-599 27-578 (636)
6 3j0a_A TOLL-like receptor 5; m 1.0 1 1 485.3 43.8 519 106-700 22-564 (844)
7 3t6q_A CD180 antigen; protein- 1.0 1 1 483.9 39.4 523 108-674 33-562 (606)
8 3j0a_A TOLL-like receptor 5; m 1.0 1 1 482.9 38.9 530 72-674 14-562 (844)
9 4ecn_A Leucine-rich repeat pro 1.0 1 1 474.6 31.7 86 31-125 264-365 (876)
10 3vq2_A TLR4, TOLL-like recepto 1.0 1 1 471.8 33.5 521 108-700 32-562 (606)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=759.05 Aligned_cols=690 Identities=33% Similarity=0.478 Sum_probs=607.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCC---CCCCCC
Q ss_conf 21479998889999999986236999998889999999999888856732414799832114678875333---378646
Q 001440 28 LIVSSNSTEEAHALLKWKTSLQNHNNKGSFLPSWTLNNATKISPCAWFGIHCNHAGKVNSINLTSAGLIGT---LHDFSF 104 (1077)
Q Consensus 28 ~~~~~~~~~~~~all~~k~~~~~~~~~~~~~~sW~~~~~~~~~~C~w~gv~C~~~~~v~~l~l~~~~~~~~---l~~~~~ 104 (1077)
+.++.+.++|++||++||+++.|+ . .++||+. ++|||+|.||+|+ .|||+.+++.+.++.|. +++. +
T Consensus 4 ~~~~~~~~~~~~all~~k~~~~~~---~-~l~~W~~----~~~~C~w~gv~C~-~~~v~~L~L~~~~l~g~~~~l~~~-l 73 (768)
T 3rgz_A 4 ASPSQSLYREIHQLISFKDVLPDK---N-LLPDWSS----NKNPCTFDGVTCR-DDKVTSIDLSSKPLNVGFSAVSSS-L 73 (768)
T ss_dssp ----CCHHHHHHHHHHHHTTCSCT---T-SSTTCCT----TSCGGGSTTEEEE-TTEEEEEECTTSCCCEEHHHHHHH-T
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCC---C-CCCCCCC----CCCCCCCCCEEEC-CCCEEEEECCCCCCCCCCCCCCHH-H
T ss_conf 765668789999999999667896---2-1468789----9987688413878-992789877899867755766965-7
Q ss_pred CCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCC--CCCCCCCCCEECCCCCCCCCCCCCCC-CCCCC
Q ss_conf 8999876897647732333783657999998883789988898999--88986766341454534578889977-77575
Q 001440 105 SSFPHLAYLDLRVNQIFGIIPSQIANNSKLKYLDLSSNSFSGTIPP--QIGNLSMLKILYLSTNQFSGRIPPQI-GHLSY 181 (1077)
Q Consensus 105 ~~l~~l~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~--~~~~l~~L~~L~l~~n~~~~~~p~~~-~~l~~ 181 (1077)
..+++|+.++++.+.+.. +|..++.+++|++|+|++|.++|.+|. .++++++|++|++++|.+.+..|..+ ..+++
T Consensus 74 ~~L~~L~~l~~~~~~~~~-l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~ 152 (768)
T 3rgz_A 74 LSLTGLESLFLSNSHING-SVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNS 152 (768)
T ss_dssp TTCTTCCEEECTTSCEEE-CCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTT
T ss_pred HCCCCCCCCCCCCCCCCC-CCHHHCCCCCCCEEECCCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCC
T ss_conf 316802246786888678-7033245788998989898578707896787278899989896882677479778563889
Q ss_pred CCEEECCCCCCCCCCCCC---CCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 445531234687898998---78877675798347767887787556766565688202334687786678888777687
Q 001440 182 LKALHLFENGLSGSIPPS---LGNLTNLAIMYLYNNSLSGSIPSEIGNLKSLSGLELGYNKLSGSMPLSLGNLPNLATLD 258 (1077)
Q Consensus 182 L~~L~L~~n~l~~~~p~~---~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ 258 (1077)
|++|++++|.+++..|.. +.++++|++|++++|.+++.+|. ..+++|++|++++|.+++.+|. ++.+++|++|+
T Consensus 153 L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~ 229 (768)
T 3rgz_A 153 LEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLD 229 (768)
T ss_dssp CSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC--TTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEE
T ss_pred CCEEECCCCCCCCCCCHHHHHHCCCCCCCEEECCCCCCCCCCCC--CCCCCCCEEECCCCCCCCCCCC-CCCCCCCCEEE
T ss_conf 99898979835885871556643589889898978803465784--5478689898928827887711-12699999897
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCC-CCCCEEECCCCCCC
Q ss_conf 12588888878988877754035078988989986423788785568767888888768876887-88628983386233
Q 001440 259 LHDNSLSGSIPLSFGNLTNLDILNLPHNSLSGSIPSEMGNLKSLYGLGLSFNKLSGSIPSSLGNL-TKLTILYLSDNLLF 337 (1077)
Q Consensus 259 L~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l-~~L~~L~L~~n~l~ 337 (1077)
+++|.+++.+|..+..+++|+.|++++|.+.+.+|.. .+++|+.|++++|++.+.+|..+... ++|+.|++++|.+.
T Consensus 230 Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~ 307 (768)
T 3rgz_A 230 ISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFY 307 (768)
T ss_dssp CCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEE
T ss_pred CCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCC--CCCCCCEEECCCCCCCCCCCHHHHHHCCCCCEEECCCCCCC
T ss_conf 9488587816577744888898989888665716724--36878989791785577258888844686889989689677
Q ss_pred CCCCCCCCCCCCCCEEECCCCCCCCCCCCC-CCCCCCCCEEECCCCCCCCCCCCCCCCCC-CCCEEECCCCCCCCCCCCC
Q ss_conf 016823345453548867998574458988-78876555687568777899962134787-8884646888767885610
Q 001440 338 GSIPCEIGNLRYLFYLELGDNKLSGSIPHS-LGNLTNLATLYLFTNLLSGSIPSEIGNLN-SLSDLGLSENELSGSIPYS 415 (1077)
Q Consensus 338 ~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~-l~~l~~L~~L~l~~n~l~~~~p~~l~~l~-~L~~L~L~~n~l~~~~~~~ 415 (1077)
+.+|..++.+++|++|++++|.+.+.+|.. +..+++|++|++.+|.+.+.+|..+..++ +|+.|++++|.+.+.++..
T Consensus 308 ~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~ 387 (768)
T 3rgz_A 308 GAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPN 387 (768)
T ss_dssp ECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTT
T ss_pred CCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHHHHCCCCEEECCCCCCCCCCCHH
T ss_conf 84236775587766778978852573797887248888788484784376230989863227719986278747876766
Q ss_pred CCC--CCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCC-CCCCCCCCCEEEECCCCCCCCCCCCCCCCCC
Q ss_conf 103--4644502323666868889866784557678563675789964-3001122224750588667877753344555
Q 001440 416 FGN--LTNMIVLSIYSNALSGAIPKEYGNLVKLTLLVLSYNQLQGPIP-DLRNLTRLARVRLDRNHLTGNISESFGIHSN 492 (1077)
Q Consensus 416 l~~--l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~ 492 (1077)
+.. +++|+.|++++|.+.+.+|..+..+++|++|++++|.+.+.++ .+..+++|+.|++.+|.+.+..+..+..+++
T Consensus 388 ~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~ 467 (768)
T 3rgz_A 388 LCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKT 467 (768)
T ss_dssp TTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTT
T ss_pred HHHCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHCCCCC
T ss_conf 65332477618989778465424877756898798989588466854677744998898989788154718978828777
Q ss_pred CCEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCC
Q ss_conf 41402356522477776779989975798126623588998889999977997348846888822111788784898259
Q 001440 493 LSYINLSHKKFYGEISFDWGKFPNLGTLDVSANNITGILPPEIGDSPQLKVLDLSSNHIVGEIPSELGKLRSLIKLTLNR 572 (1077)
Q Consensus 493 L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~L~~ 572 (1077)
|+.|++++|.+.+..+..+..+++|++|++++|.+....|..+..+++|+.|++++|++.+.+|..+..+++|+.|++++
T Consensus 468 L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~ 547 (768)
T 3rgz_A 468 LETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNT 547 (768)
T ss_dssp CCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCS
T ss_pred CEEEEECCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCC
T ss_conf 32999019951375887881699899897539951896876885689999898978943374887770889899898988
Q ss_pred CCCCCCCCHHHHCCC----------------------------------------------CCCEEECCCCCCCCCCCCC
Q ss_conf 614577432100012----------------------------------------------3562321577456888885
Q 001440 573 NQFSGQLPTELGSLI----------------------------------------------QLEHLDLSSNRLSNSIPGS 606 (1077)
Q Consensus 573 N~l~~~~~~~l~~l~----------------------------------------------~L~~L~Ls~N~l~~~~~~~ 606 (1077)
|.+++.+|..+.... .+..++++.|.+.+..+..
T Consensus 548 N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~ 627 (768)
T 3rgz_A 548 NLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPT 627 (768)
T ss_dssp SEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCS
T ss_pred CCCCCCCCHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCEECCCCCHH
T ss_conf 84688279578604212232013454211113444322223322210013556323200232110011331004627433
Q ss_pred CCCCCCCEEEEECCCCCCCCCCHHCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCHHHHCCCCCC
Q ss_conf 44433450664103223587611013453346110146658997740010223211202456634565310121156640
Q 001440 607 LGNLVKLYYLNLSNNQFSGEIPIKLEKFIHLSDLDLSHNFLGEEIPSQVCSMQSLEKLNLAHNNLSGFIPRCFKEMHGLV 686 (1077)
Q Consensus 607 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~l~~l~~L~ 686 (1077)
+..+++|+.|++++|++++.+|..+..++.|+.|+|++|++++.+|..+..+++|+.|++++|++++.+|..+..++.|+
T Consensus 628 ~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~ 707 (768)
T 3rgz_A 628 FDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLT 707 (768)
T ss_dssp CSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCS
T ss_pred HHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCC
T ss_conf 40335665797858801555877884141578784868803887896784777899898978802386886775788789
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 8831477146989997423568722126997656987899865688876
Q 001440 687 YIDISYNKLHGPIPNSAAFKHAPMEALQGNKGLCGDIKGFPSCKASKSD 735 (1077)
Q Consensus 687 ~l~l~~N~l~~~~~~~~~~~~~~~~~~~~n~~~c~~~~~~~~c~~~~~~ 735 (1077)
.+|+++|++++.+|....|.......+.+||+.||.+.. +|.....+
T Consensus 708 ~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~--~C~~~~~~ 754 (768)
T 3rgz_A 708 EIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLP--RCDPSNAD 754 (768)
T ss_dssp EEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSC--CCCSCC--
T ss_pred EEECCCCCCCCCCCCCHHHCCCCHHHHCCCCHHCCCCCC--CCCCCCCC
T ss_conf 787968815560899601024897775698321088776--78887668
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=609.59 Aligned_cols=590 Identities=33% Similarity=0.474 Sum_probs=527.7
Q ss_pred CCCCCCCCCCEEECCCCCCCCCCCC--CCCCCCCCCEEECCCCCCCCCCCCCC-CCCCCCCEECCCCCCCCCCCCCC---
Q ss_conf 6468999876897647732333783--65799999888378998889899988-98676634145453457888997---
Q 001440 102 FSFSSFPHLAYLDLRVNQIFGIIPS--QIANNSKLKYLDLSSNSFSGTIPPQI-GNLSMLKILYLSTNQFSGRIPPQ--- 175 (1077)
Q Consensus 102 ~~~~~l~~l~~L~L~~n~~~~~~p~--~~~~l~~L~~L~L~~n~~~~~~p~~~-~~l~~L~~L~l~~n~~~~~~p~~--- 175 (1077)
..|..+++|++|+|++|.+.|.+|. .++++++|++|+|++|.+.+.+|..+ .++++|++|++++|.+++..|..
T Consensus 94 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 173 (768)
T 3rgz_A 94 SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVL 173 (768)
T ss_dssp CCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHH
T ss_pred HHHCCCCCCCEEECCCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCHHHHH
T ss_conf 33245788998989898578707896787278899989896882677479778563889998989798358858715566
Q ss_pred CCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 77757544553123468789899878877675798347767887787556766565688202334687786678888777
Q 001440 176 IGHLSYLKALHLFENGLSGSIPPSLGNLTNLAIMYLYNNSLSGSIPSEIGNLKSLSGLELGYNKLSGSMPLSLGNLPNLA 255 (1077)
Q Consensus 176 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~ 255 (1077)
+..+++|++|++++|.+.+..|. ..+++|++|++++|.+++.+|. ++.+++|++|++++|.+++..|..+..+++|+
T Consensus 174 ~~~l~~L~~L~Ls~n~l~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~ 250 (768)
T 3rgz_A 174 SDGCGELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELK 250 (768)
T ss_dssp TTCCTTCCEEECCSSEEESCCBC--TTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCC
T ss_pred HCCCCCCCEEECCCCCCCCCCCC--CCCCCCCEEECCCCCCCCCCCC-CCCCCCCCEEECCCCCCCCCCCHHHHCCCCCC
T ss_conf 43589889898978803465784--5478689898928827887711-12699999897948858781657774488889
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCC-CCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCC
Q ss_conf 68712588888878988877754035078988989986423788-78556876788888876887688788628983386
Q 001440 256 TLDLHDNSLSGSIPLSFGNLTNLDILNLPHNSLSGSIPSEMGNL-KSLYGLGLSFNKLSGSIPSSLGNLTKLTILYLSDN 334 (1077)
Q Consensus 256 ~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l-~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n 334 (1077)
+|++++|.+++.+|.. .+++|+.|++++|++.+.+|..+... ++|+.|++++|++.+.+|..++++++|+.|++++|
T Consensus 251 ~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n 328 (768)
T 3rgz_A 251 LLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSN 328 (768)
T ss_dssp EEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSS
T ss_pred EEECCCCCCCCCCCCC--CCCCCCEEECCCCCCCCCCCHHHHHHCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCC
T ss_conf 8989888665716724--36878989791785577258888844686889989689677842367755877667789788
Q ss_pred CCCCCCCCC-CCCCCCCCEEECCCCCCCCCCCCCCCCCC-CCCEEECCCCCCCCCCCCCCCC--CCCCCEEECCCCCCCC
Q ss_conf 233016823-34545354886799857445898878876-5556875687778999621347--8788846468887678
Q 001440 335 LLFGSIPCE-IGNLRYLFYLELGDNKLSGSIPHSLGNLT-NLATLYLFTNLLSGSIPSEIGN--LNSLSDLGLSENELSG 410 (1077)
Q Consensus 335 ~l~~~~p~~-l~~l~~L~~L~l~~n~l~~~~~~~l~~l~-~L~~L~l~~n~l~~~~p~~l~~--l~~L~~L~L~~n~l~~ 410 (1077)
.+.+.+|.. +..+++|++|++++|.+.+.+|..+..+. +|+.|++.+|.+.+.+|..+.. +++|++|++++|.+.+
T Consensus 329 ~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~ 408 (768)
T 3rgz_A 329 NFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTG 408 (768)
T ss_dssp EEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEE
T ss_pred CCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHHHHCCCCEEECCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCC
T ss_conf 52573797887248888788484784376230989863227719986278747876766653324776189897784654
Q ss_pred CCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCC-CCCCCCCCCEEEECCCCCCCCCCCCCCC
Q ss_conf 856101034644502323666868889866784557678563675789964-3001122224750588667877753344
Q 001440 411 SIPYSFGNLTNMIVLSIYSNALSGAIPKEYGNLVKLTLLVLSYNQLQGPIP-DLRNLTRLARVRLDRNHLTGNISESFGI 489 (1077)
Q Consensus 411 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~ 489 (1077)
.+|..+.++++|+.|++++|.+.+.+|..+..+++|+.|++++|.+.+.++ .+..+++|+.|++.+|.+++..+..+..
T Consensus 409 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~ 488 (768)
T 3rgz_A 409 KIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSN 488 (768)
T ss_dssp ECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGG
T ss_pred CCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHCCCCCCEEEEECCCCCCCCCCHHHHC
T ss_conf 24877756898798989588466854677744998898989788154718978828777329990199513758878816
Q ss_pred CCCCCEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHCCCCCCCE--
Q ss_conf 555414023565224777767799899757981266235889988899999779973488468888221117887848--
Q 001440 490 HSNLSYINLSHKKFYGEISFDWGKFPNLGTLDVSANNITGILPPEIGDSPQLKVLDLSSNHIVGEIPSELGKLRSLIK-- 567 (1077)
Q Consensus 490 ~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~-- 567 (1077)
+++|++|++++|++.+..+..+..+++|++|++++|.+....|..+..+++|+.|++++|.+.+.+|..+.....+..
T Consensus 489 l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~ 568 (768)
T 3rgz_A 489 CTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAAN 568 (768)
T ss_dssp CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCS
T ss_pred CCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCHHHHCCCCHHHHH
T ss_conf 99899897539951896876885689999898978943374887770889899898988846882795786042122320
Q ss_pred --------------------------------------------EECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCC
Q ss_conf --------------------------------------------982596145774321000123562321577456888
Q 001440 568 --------------------------------------------LTLNRNQFSGQLPTELGSLIQLEHLDLSSNRLSNSI 603 (1077)
Q Consensus 568 --------------------------------------------L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~ 603 (1077)
+++..|.+.+..+..+..+++|++|++++|.+++.+
T Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~i 648 (768)
T 3rgz_A 569 FIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYI 648 (768)
T ss_dssp TTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCEECCCCCHHHHCCCCCCEEECCCCCCCCCC
T ss_conf 13454211113444322223322210013556323200232110011331004627433403356657978588015558
Q ss_pred CCCCCCCCCCEEEEECCCCCCCCCCHHCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCHHHHCCC
Q ss_conf 88544433450664103223587611013453346110146658997740010223211202456634565310121156
Q 001440 604 PGSLGNLVKLYYLNLSNNQFSGEIPIKLEKFIHLSDLDLSHNFLGEEIPSQVCSMQSLEKLNLAHNNLSGFIPRCFKEMH 683 (1077)
Q Consensus 604 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~l~~l~ 683 (1077)
|..++.++.|+.|+|++|++++.+|..+..++.|+.|+|++|++++.+|..+..+++|++|++++|++++.+|.. ..+.
T Consensus 649 p~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~ 727 (768)
T 3rgz_A 649 PKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQFE 727 (768)
T ss_dssp CGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS-SSGG
T ss_pred CHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCC-HHHC
T ss_conf 778841415787848688038878967847778998989788023868867757887897879688155608996-0102
Q ss_pred CCCEEECCCCCCCC
Q ss_conf 64088314771469
Q 001440 684 GLVYIDISYNKLHG 697 (1077)
Q Consensus 684 ~L~~l~l~~N~l~~ 697 (1077)
.+....+.+|+.-+
T Consensus 728 ~~~~~~~~gN~~Lc 741 (768)
T 3rgz_A 728 TFPPAKFLNNPGLC 741 (768)
T ss_dssp GSCGGGGCSCTEEE
T ss_pred CCCHHHHCCCCHHC
T ss_conf 48977756983210
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=1.00 E-value=1 Score=537.00 Aligned_cols=579 Identities=25% Similarity=0.258 Sum_probs=442.8
Q ss_pred CCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCEEEC
Q ss_conf 98768976477323337836579999988837899888989998898676634145453457888997777575445531
Q 001440 108 PHLAYLDLRVNQIFGIIPSQIANNSKLKYLDLSSNSFSGTIPPQIGNLSMLKILYLSTNQFSGRIPPQIGHLSYLKALHL 187 (1077)
Q Consensus 108 ~~l~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~L 187 (1077)
+++++|+|++|.+.+..+..|.++++|++|+|++|.+++..|..|+++++|++|++++|.+....+..|..+++|++|++
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 104 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL 104 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEEC
T ss_conf 88768889899778759788717876758878899648569778740667688889998567568545303888898989
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCC--CCCCCCEEECCCCCCC
Q ss_conf 23468789899878877675798347767887787556766565688202334687786678--8887776871258888
Q 001440 188 FENGLSGSIPPSLGNLTNLAIMYLYNNSLSGSIPSEIGNLKSLSGLELGYNKLSGSMPLSLG--NLPNLATLDLHDNSLS 265 (1077)
Q Consensus 188 ~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~--~l~~L~~L~L~~N~l~ 265 (1077)
++|.+++..|..|+++++|++|++++|.+++..|..+..+++|++|++++|.+++..+..+. .+++|++|++++|.++
T Consensus 105 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~ 184 (680)
T 1ziw_A 105 MSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIK 184 (680)
T ss_dssp CSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCC
T ss_pred CCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCCCEEECCCCCCC
T ss_conf 89966853966741567888898989952466721112455677797458843652978862446663217988898256
Q ss_pred CCCCCCCCCCCCCCEECCCCCCCCCCCCCCCC---CCCCCCEEECCCCCCCCCCCCCCCCCCC--CCEEECCCCCCCCCC
Q ss_conf 88789888777540350789889899864237---8878556876788888876887688788--628983386233016
Q 001440 266 GSIPLSFGNLTNLDILNLPHNSLSGSIPSEMG---NLKSLYGLGLSFNKLSGSIPSSLGNLTK--LTILYLSDNLLFGSI 340 (1077)
Q Consensus 266 ~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~---~l~~L~~L~Ls~N~l~~~~p~~~~~l~~--L~~L~L~~n~l~~~~ 340 (1077)
+..|..|..+.+|+.|++.+|.+.+.....+. ..++|+.|++++|.+.+..|..+.+++. |+.|++++|.+.+..
T Consensus 185 ~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~ 264 (680)
T 1ziw_A 185 EFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVG 264 (680)
T ss_dssp CBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEEC
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEECCCCCCCCCCHHHHHCCCCCCCCEEECCCCCCCCCC
T ss_conf 55815553223445543056646805677787775315100887457743646866751467677888778788767568
Q ss_pred CCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCC
Q ss_conf 82334545354886799857445898878876555687568777899962134787888464688876788561010346
Q 001440 341 PCEIGNLRYLFYLELGDNKLSGSIPHSLGNLTNLATLYLFTNLLSGSIPSEIGNLNSLSDLGLSENELSGSIPYSFGNLT 420 (1077)
Q Consensus 341 p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 420 (1077)
|..+..+++|++|++++|.+.+..+..+.++++|+.|++.+|...+.++. +.+.......|..++
T Consensus 265 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~---------------~~lp~i~~~~~~~l~ 329 (680)
T 1ziw_A 265 NDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISL---------------ASLPKIDDFSFQWLK 329 (680)
T ss_dssp TTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC---------------------CCEECTTTTTTCT
T ss_pred CCCCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCHHHHCCCCC---------------CCCCCCCHHHCCCCC
T ss_conf 02116741056855778856765865626788855773633132133333---------------554543865624677
Q ss_pred CCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCC-CC--CCCC--CCCCCEEEECCCCCCCCCCCCCCCCCCCCE
Q ss_conf 445023236668688898667845576785636757899-64--3001--122224750588667877753344555414
Q 001440 421 NMIVLSIYSNALSGAIPKEYGNLVKLTLLVLSYNQLQGP-IP--DLRN--LTRLARVRLDRNHLTGNISESFGIHSNLSY 495 (1077)
Q Consensus 421 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~--~l~~--l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~ 495 (1077)
+|+.|++++|.+.+..+..|..+++|++|++++|.+... ++ .+.. .+.|+.+++.+|.++...+..+..+++|+.
T Consensus 330 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 409 (680)
T 1ziw_A 330 CLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEV 409 (680)
T ss_dssp TCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred CCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCHHHHHCCHHHHCCCCCCCCCEEECCCCCCCEECHHHHHCCCCCCE
T ss_conf 78888798982687885574065687289887980144323532202455686766889999777677544207788888
Q ss_pred ECCCCCCCCC-CCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCC--CCCCHHHCCCCCCCEEECCC
Q ss_conf 0235652247-77767799899757981266235889988899999779973488468--88822111788784898259
Q 001440 496 INLSHKKFYG-EISFDWGKFPNLGTLDVSANNITGILPPEIGDSPQLKVLDLSSNHIV--GEIPSELGKLRSLIKLTLNR 572 (1077)
Q Consensus 496 L~L~~n~i~~-~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~l~~~~~L~~L~L~~ 572 (1077)
|++++|.+.+ .....+..+++|++|++++|.+....+..+..+++|+.|++++|.+. +..|..+..+++|+.|++++
T Consensus 410 L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~ 489 (680)
T 1ziw_A 410 LDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSN 489 (680)
T ss_dssp EECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCS
T ss_pred EECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEECHHHHHCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCEEECCC
T ss_conf 86778757543575532575461278448997542276455007543101101464422566776455578789998999
Q ss_pred CCCCCCCCHHHHCCCCCCEEECCCCCCCCCCC--------CCCCCCCCCEEEEECCCCCCCCCCHHCCCCCCCCCEECCC
Q ss_conf 61457743210001235623215774568888--------8544433450664103223587611013453346110146
Q 001440 573 NQFSGQLPTELGSLIQLEHLDLSSNRLSNSIP--------GSLGNLVKLYYLNLSNNQFSGEIPIKLEKFIHLSDLDLSH 644 (1077)
Q Consensus 573 N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~--------~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~L~~L~Ls~ 644 (1077)
|++++..+..+..+++|++|++++|.++.... ..|..+++|+.|++++|+++...+..|..+++|+.|++++
T Consensus 490 N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 569 (680)
T 1ziw_A 490 NNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGL 569 (680)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCCCEEECCC
T ss_conf 98776794463455346888588997300000004677414233799888888999978877977734666752238999
Q ss_pred CCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCHHHH-CCCCCCEEECCCCCCCCCCCC
Q ss_conf 658997740010223211202456634565310121-156640883147714698999
Q 001440 645 NFLGEEIPSQVCSMQSLEKLNLAHNNLSGFIPRCFK-EMHGLVYIDISYNKLHGPIPN 701 (1077)
Q Consensus 645 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~l~-~l~~L~~l~l~~N~l~~~~~~ 701 (1077)
|+++...+..+..+++|+.|++++|++++..+..+. .+++|+.+++++|++.+..+.
T Consensus 570 N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 570 NNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES 627 (680)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred CCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCCEEECCCCCCCCCCCC
T ss_conf 9777679768378988888989999687059668301146657798318970257766
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=1.00 E-value=1 Score=533.84 Aligned_cols=567 Identities=24% Similarity=0.245 Sum_probs=247.4
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEECC
Q ss_conf 83211467887533337864689998768976477323337836579999988837899888989998898676634145
Q 001440 84 KVNSINLTSAGLIGTLHDFSFSSFPHLAYLDLRVNQIFGIIPSQIANNSKLKYLDLSSNSFSGTIPPQIGNLSMLKILYL 163 (1077)
Q Consensus 84 ~v~~l~l~~~~~~~~l~~~~~~~l~~l~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l 163 (1077)
+++.+++.+..+.+ +++..|.++++|++|+|++|.+.+..|..++++++|++|+|++|.+++..+..|+++++|++|++
T Consensus 26 ~l~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 104 (680)
T 1ziw_A 26 NITVLNLTHNQLRR-LPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL 104 (680)
T ss_dssp TCSEEECCSSCCCC-CCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCEEECCCCCCCC-CCHHHHHCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEEC
T ss_conf 87688898997787-59788717876758878899648569778740667688889998567568545303888898989
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCC--CCCCCCEEEEECCCCC
Q ss_conf 45345788899777757544553123468789899878877675798347767887787556--7665656882023346
Q 001440 164 STNQFSGRIPPQIGHLSYLKALHLFENGLSGSIPPSLGNLTNLAIMYLYNNSLSGSIPSEIG--NLKSLSGLELGYNKLS 241 (1077)
Q Consensus 164 ~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~--~l~~L~~L~l~~n~l~ 241 (1077)
++|.+.+..|..|..+++|++|++++|.+++..|..+.++++|+.|++++|.+++..+..+. .+++|+.|++++|.++
T Consensus 105 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~ 184 (680)
T 1ziw_A 105 MSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIK 184 (680)
T ss_dssp CSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCC
T ss_pred CCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCCCEEECCCCCCC
T ss_conf 89966853966741567888898989952466721112455677797458843652978862446663217988898256
Q ss_pred CCCCCCCCCCCCCCEEECCCCCCCCCCCCCC---CCCCCCCEECCCCCCCCCCCCCCCCCCCC--CCEEECCCCCCCCCC
Q ss_conf 8778667888877768712588888878988---87775403507898898998642378878--556876788888876
Q 001440 242 GSMPLSLGNLPNLATLDLHDNSLSGSIPLSF---GNLTNLDILNLPHNSLSGSIPSEMGNLKS--LYGLGLSFNKLSGSI 316 (1077)
Q Consensus 242 ~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~---~~l~~L~~L~L~~n~l~~~~p~~~~~l~~--L~~L~Ls~N~l~~~~ 316 (1077)
+..|..+..+++|+.|++++|.+.+.....+ ...++|+.|++++|.+.+..|..+..++. |+.|++++|++.+..
T Consensus 185 ~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~ 264 (680)
T 1ziw_A 185 EFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVG 264 (680)
T ss_dssp CBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEEC
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEECCCCCCCCCCHHHHHCCCCCCCCEEECCCCCCCCCC
T ss_conf 55815553223445543056646805677787775315100887457743646866751467677888778788767568
Q ss_pred CCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCC-----CC----CCCCCCCCCCEEECCCCCCCCC
Q ss_conf 88768878862898338623301682334545354886799857445-----89----8878876555687568777899
Q 001440 317 PSSLGNLTKLTILYLSDNLLFGSIPCEIGNLRYLFYLELGDNKLSGS-----IP----HSLGNLTNLATLYLFTNLLSGS 387 (1077)
Q Consensus 317 p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~-----~~----~~l~~l~~L~~L~l~~n~l~~~ 387 (1077)
|..+..+++|+.|++++|.+.+..|..+..+++|++|++++|...+. +| ..+..+++|++|++.+|.+.+.
T Consensus 265 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~ 344 (680)
T 1ziw_A 265 NDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGI 344 (680)
T ss_dssp TTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCC
T ss_pred CCCCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCHHHHCCCCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCC
T ss_conf 02116741056855778856765865626788855773633132133333554543865624677788887989826878
Q ss_pred CCCCCCCCCCCCEEECCCCCCCCC--CCCCCCCC--CCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCC
Q ss_conf 962134787888464688876788--56101034--64450232366686888986678455767856367578996430
Q 001440 388 IPSEIGNLNSLSDLGLSENELSGS--IPYSFGNL--TNMIVLSIYSNALSGAIPKEYGNLVKLTLLVLSYNQLQGPIPDL 463 (1077)
Q Consensus 388 ~p~~l~~l~~L~~L~L~~n~l~~~--~~~~l~~l--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~l 463 (1077)
.+..+..+++|++|++++|.+... ....|..+ +.|+.|++++|.+.+..+..+..+++|+.|++++|.+.+.++
T Consensus 345 ~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-- 422 (680)
T 1ziw_A 345 KSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELT-- 422 (680)
T ss_dssp CTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECC--
T ss_pred CHHHHCCCCCCCEEECCCCCHHHHHCCHHHHCCCCCCCCCEEECCCCCCCEECHHHHHCCCCCCEEECCCCCCCCCCC--
T ss_conf 855740656872898879801443235322024556867668899997776775442077888888677875754357--
Q ss_pred CCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCC--CCCCCCCCCCCCC
Q ss_conf 01122224750588667877753344555414023565224777767799899757981266235--8899888999997
Q 001440 464 RNLTRLARVRLDRNHLTGNISESFGIHSNLSYINLSHKKFYGEISFDWGKFPNLGTLDVSANNIT--GILPPEIGDSPQL 541 (1077)
Q Consensus 464 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~l~--~~~~~~~~~l~~L 541 (1077)
...+..+++|+.|++++|.+.......|..+++|++|++++|.+. ...+..+..+++|
T Consensus 423 --------------------~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L 482 (680)
T 1ziw_A 423 --------------------GQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNL 482 (680)
T ss_dssp --------------------SGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTC
T ss_pred --------------------CCCCCCCCCCCEEECCCCCCCEECHHHHHCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCC
T ss_conf --------------------553257546127844899754227645500754310110146442256677645557878
Q ss_pred CEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCC--------HHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 799734884688882211178878489825961457743--------210001235623215774568888854443345
Q 001440 542 KVLDLSSNHIVGEIPSELGKLRSLIKLTLNRNQFSGQLP--------TELGSLIQLEHLDLSSNRLSNSIPGSLGNLVKL 613 (1077)
Q Consensus 542 ~~L~L~~n~l~~~~~~~l~~~~~L~~L~L~~N~l~~~~~--------~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 613 (1077)
+.|++++|+++...+..+..+++|++|++++|++++... ..+..+++|+.|++++|.++...+..|..+++|
T Consensus 483 ~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L 562 (680)
T 1ziw_A 483 TILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFEL 562 (680)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCC
T ss_conf 99989999877679446345534688858899730000000467741423379988888899997887797773466675
Q ss_pred EEEEECCCCCCCCCCHHCCCCCCCCCEECCCCCCCCCCCCCCC-CCCCCCHHCCCCCCCCC
Q ss_conf 0664103223587611013453346110146658997740010-22321120245663456
Q 001440 614 YYLNLSNNQFSGEIPIKLEKFIHLSDLDLSHNFLGEEIPSQVC-SMQSLEKLNLAHNNLSG 673 (1077)
Q Consensus 614 ~~L~L~~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~l~~N~l~~ 673 (1077)
+.|++++|++++..+..|..+++|+.|++++|+++...+..+. .+++|+.+++++|++.+
T Consensus 563 ~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c 623 (680)
T 1ziw_A 563 KIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDC 623 (680)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCB
T ss_pred CEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCCEEECCCCCCCC
T ss_conf 2238999977767976837898888898999968705966830114665779831897025
No 5
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=1.00 E-value=1 Score=486.66 Aligned_cols=492 Identities=19% Similarity=0.240 Sum_probs=275.9
Q ss_pred CCHHHHHHHHHHHHHCCCCCCCCC-------CCCCCCCCCCCCCCCCCC---CCEEECCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 998889999999986236999998-------889999999999888856---7324147998321146788753333786
Q 001440 33 NSTEEAHALLKWKTSLQNHNNKGS-------FLPSWTLNNATKISPCAW---FGIHCNHAGKVNSINLTSAGLIGTLHDF 102 (1077)
Q Consensus 33 ~~~~~~~all~~k~~~~~~~~~~~-------~~~sW~~~~~~~~~~C~w---~gv~C~~~~~v~~l~l~~~~~~~~l~~~ 102 (1077)
....|+.||.++|+++..+. |. ..++|+. +.|||.| .||+|+..|||+++++.+.++.|.+++.
T Consensus 27 ~~~~d~~aL~~~~~~~~~~~--w~~~~~~~~~~~~W~~----~~~~c~w~~~~GV~C~~~~~V~~L~L~~~~l~g~lp~~ 100 (636)
T 4eco_A 27 EYIKDYLALKEIWDALNGKN--WSQQGFGTQPGANWNF----NKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDA 100 (636)
T ss_dssp HHHHHHHHHHHHHHHTTGGG--CCCCC------CCCCC----SSCGGGTTCCTTEEECTTCCEEEEECTTSCCEEEECGG
T ss_pred HHHHHHHHHHHHHHHCCCCC--CCCCCCCCCCCCCCCC----CCCCCCCCCCCCEEECCCCCEEEEEECCCCCCCCCCHH
T ss_conf 67788999999999758997--4547767765788777----99800014779848767897889984276657728857
Q ss_pred CCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCC-CCC
Q ss_conf 4689998768976477323337836579999988837899888989998898676634145453457888997777-575
Q 001440 103 SFSSFPHLAYLDLRVNQIFGIIPSQIANNSKLKYLDLSSNSFSGTIPPQIGNLSMLKILYLSTNQFSGRIPPQIGH-LSY 181 (1077)
Q Consensus 103 ~~~~l~~l~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~~~~-l~~ 181 (1077)
++.+++|++|+|++|.+... +..++.. .+...+|... +..|+ ++++.|.+.+.+|..+.. +..
T Consensus 101 -l~~L~~L~~L~Ls~N~~~~~-~~~~~~~-----------~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~~~~~~~~ 164 (636)
T 4eco_A 101 -IGQLTELEVLALGSHGEKVN-ERLFGPK-----------GISANMSDEQ--KQKMR-MHYQKTFVDYDPREDFSDLIKD 164 (636)
T ss_dssp -GGGCTTCCEEESCCGGGGGT-CCSBSTT-----------SBCTTCCHHH--HHHHH-THHHHHHTCCCGGGGSCHHHHH
T ss_pred -HHCCCCCEEEECCCCCCCCC-CCCCCCC-----------CCCCCCHHHH--HHHHH-HHHHHHHHCCCCHHHHHHHHHH
T ss_conf -85684511898768851237-7433453-----------2356733888--88887-6577755411706667788777
Q ss_pred CCEEECCCCCCCCCCCCCCCCCCCCCEEEC--CCCCCCCCCCCCCCCCCCCCEEEEECCCCCCC----------------
Q ss_conf 445531234687898998788776757983--47767887787556766565688202334687----------------
Q 001440 182 LKALHLFENGLSGSIPPSLGNLTNLAIMYL--YNNSLSGSIPSEIGNLKSLSGLELGYNKLSGS---------------- 243 (1077)
Q Consensus 182 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L--~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~---------------- 243 (1077)
+..+++....+.. .....++.+.+ .+|++++ +|+.++++++|++|++++|.+++.
T Consensus 165 l~~~~l~~~~~~~------~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~ 237 (636)
T 4eco_A 165 CINSDPQQKSIKK------SSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQ 237 (636)
T ss_dssp HHHHCTTSCCCCC------CCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHH
T ss_pred HHHCCCCCCCCCC------CCCCCHHHHHHCCCCCCCCC-CCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCHHCC
T ss_conf 7642755465410------13344213001013677750-7877725647878988688236642322122222100102
Q ss_pred -CCCCCC--CCCCCCEEECCCCCCCCCCCCCCCCCCCCCEECCCCCC-CCC-CCCCCCCCC------CCCCEEECCCCCC
Q ss_conf -786678--88877768712588888878988877754035078988-989-986423788------7855687678888
Q 001440 244 -MPLSLG--NLPNLATLDLHDNSLSGSIPLSFGNLTNLDILNLPHNS-LSG-SIPSEMGNL------KSLYGLGLSFNKL 312 (1077)
Q Consensus 244 -~p~~l~--~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~n~-l~~-~~p~~~~~l------~~L~~L~Ls~N~l 312 (1077)
+|..++ ++++|++|++++|.+.+.+|..|+++++|+.|++++|+ +++ .+|..++.+ ++|+.|++++|++
T Consensus 238 ~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l 317 (636)
T 4eco_A 238 YKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNL 317 (636)
T ss_dssp HTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCC
T ss_pred CCCHHHHHCCCCCCCEEEECCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEECCCCCC
T ss_conf 48632200446878889804885776283888349997889784798876653357887543046578888898979937
Q ss_pred CCCCCC--CCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCC-CCEEECCCCCCCCCCC
Q ss_conf 887688--7688788628983386233016823345453548867998574458988788765-5568756877789996
Q 001440 313 SGSIPS--SLGNLTKLTILYLSDNLLFGSIPCEIGNLRYLFYLELGDNKLSGSIPHSLGNLTN-LATLYLFTNLLSGSIP 389 (1077)
Q Consensus 313 ~~~~p~--~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~-L~~L~l~~n~l~~~~p 389 (1077)
+ .+|. .++++++|+.|++++|.+.|.+| .+..+++|++|++++|.+. .+|..+..+++ |+.|++.+|.+. .+|
T Consensus 318 ~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp 393 (636)
T 4eco_A 318 K-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIP 393 (636)
T ss_dssp S-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCC
T ss_pred C-CCCCHHHHCCCCCCCEEECCCCCCCCCHH-HHCCCCCCCEEECCCCCCC-CCCHHHHHHCCCCCEEECCCCCCC-CCC
T ss_conf 7-66765554257888989690880705166-6478898898989899403-033756510236868985298275-446
Q ss_pred CCCCCCC--CCCEEECCCCCCCCCCCCCCC-------CCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC
Q ss_conf 2134787--888464688876788561010-------3464450232366686888986678455767856367578996
Q 001440 390 SEIGNLN--SLSDLGLSENELSGSIPYSFG-------NLTNMIVLSIYSNALSGAIPKEYGNLVKLTLLVLSYNQLQGPI 460 (1077)
Q Consensus 390 ~~l~~l~--~L~~L~L~~n~l~~~~~~~l~-------~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 460 (1077)
..+..+. +|+.|++++|.+.+..|..+. .+++|+.|++++|.+....+..+..+++|++|+|++|.+..
T Consensus 394 ~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~-- 471 (636)
T 4eco_A 394 NIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTE-- 471 (636)
T ss_dssp SCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSB--
T ss_pred HHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCC--
T ss_conf 655333457668897748857886524420022011258988889772796686787887158988989897997887--
Q ss_pred CCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCC--CC
Q ss_conf 4300112222475058866787775334455541402356522477776779989975798126623588998889--99
Q 001440 461 PDLRNLTRLARVRLDRNHLTGNISESFGIHSNLSYINLSHKKFYGEISFDWGKFPNLGTLDVSANNITGILPPEIG--DS 538 (1077)
Q Consensus 461 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~--~l 538 (1077)
.+...+.... ..+..+++|++|++++|.++. .+..+. .+
T Consensus 472 ---------------------i~~~~~~~~~-----------------~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~~~l 512 (636)
T 4eco_A 472 ---------------------IPKNSLKDEN-----------------ENFKNTYLLTSIDLRFNKLTK-LSDDFRATTL 512 (636)
T ss_dssp ---------------------CCSSSSEETT-----------------EECTTGGGCCEEECCSSCCCB-CCGGGSTTTC
T ss_pred ---------------------CCHHHHCCCC-----------------CCCCCCCCCCEEECCCCCCCC-CCHHHHHCCC
T ss_conf ---------------------3978840440-----------------012214773389896993881-6854534458
Q ss_pred CCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCC------CCCCCCCCHHHHCCCCCCEEECCCCCC
Q ss_conf 9977997348846888822111788784898259------614577432100012356232157745
Q 001440 539 PQLKVLDLSSNHIVGEIPSELGKLRSLIKLTLNR------NQFSGQLPTELGSLIQLEHLDLSSNRL 599 (1077)
Q Consensus 539 ~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~L~~------N~l~~~~~~~l~~l~~L~~L~Ls~N~l 599 (1077)
++|+.|++++|++++ +|..+..+++|+.|++++ |++.+.+|..+..+++|+.|++++|.+
T Consensus 513 ~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 578 (636)
T 4eco_A 513 PYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI 578 (636)
T ss_dssp TTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred CCCCEEECCCCCCCC-CCHHHHCCCCCCEEECCCCCCCCCCCCCCCCHHHHHCCCCCCEEECCCCCC
T ss_conf 876989898998877-682353088878788988866566731212737785699878898989947
No 6
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=485.30 Aligned_cols=519 Identities=23% Similarity=0.225 Sum_probs=310.4
Q ss_pred CCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC-CCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 9998768976477323337836579999988837899888989-998898676634145453457888997777575445
Q 001440 106 SFPHLAYLDLRVNQIFGIIPSQIANNSKLKYLDLSSNSFSGTI-PPQIGNLSMLKILYLSTNQFSGRIPPQIGHLSYLKA 184 (1077)
Q Consensus 106 ~l~~l~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~-p~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~ 184 (1077)
..+++++|+|++|.+.+..|..|.++++|++|+|++|...+.+ |..|.++++|++|+|++|.+.+..|..|.++++|++
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 101 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFE 101 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCC
T ss_pred CCCCCCEEECCCCCCCCCCHHHCCCCCCCEEEECCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCCCE
T ss_conf 99986888887786783296677662137088678997744419778537877888879899585319767157866587
Q ss_pred EECCCCCCCCCCCCC--CCCCCCCCEEECCCCCCCCCCC-CCCCCCCCCCEEEEECCCCCCCCCCCCCCC--CCCCEEEC
Q ss_conf 531234687898998--7887767579834776788778-755676656568820233468778667888--87776871
Q 001440 185 LHLFENGLSGSIPPS--LGNLTNLAIMYLYNNSLSGSIP-SEIGNLKSLSGLELGYNKLSGSMPLSLGNL--PNLATLDL 259 (1077)
Q Consensus 185 L~L~~n~l~~~~p~~--~~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l--~~L~~L~L 259 (1077)
|+|++|.+++.+|.. +.++++|+.|+|++|.+++..+ ..|+++++|+.|++++|.+++..+..+..+ ++|+.|++
T Consensus 102 L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L 181 (844)
T 3j0a_A 102 LRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSL 181 (844)
T ss_dssp EECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEE
T ss_pred EECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHCCCCCEEECCCCCCCEECHHHCCCCCCCCCCEEEC
T ss_conf 01767889734046764556679998889878642325665576388989898989847766788753556775035789
Q ss_pred CCCCCCCCCCCCCCCCCC------CCEECCCCCCCCCCCCCCCCCC---CCCCEEECCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 258888887898887775------4035078988989986423788---7855687678888887688768878862898
Q 001440 260 HDNSLSGSIPLSFGNLTN------LDILNLPHNSLSGSIPSEMGNL---KSLYGLGLSFNKLSGSIPSSLGNLTKLTILY 330 (1077)
Q Consensus 260 ~~N~l~~~~p~~~~~l~~------L~~L~L~~n~l~~~~p~~~~~l---~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 330 (1077)
+.|.+.+..|..+..+.+ |+.|++++|.+.+..+..+... .++..+.++++.....
T Consensus 182 ~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~--------------- 246 (844)
T 3j0a_A 182 AANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAG--------------- 246 (844)
T ss_dssp CCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCS---------------
T ss_pred CCCCCCCCCCCCHHHCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCEECCCCCCCCC---------------
T ss_conf 78866655455332237722357400796578868656778887642744100112121223466---------------
Q ss_pred CCCCCCCCCCCCCCCCC--CCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCC
Q ss_conf 33862330168233454--5354886799857445898878876555687568777899962134787888464688876
Q 001440 331 LSDNLLFGSIPCEIGNL--RYLFYLELGDNKLSGSIPHSLGNLTNLATLYLFTNLLSGSIPSEIGNLNSLSDLGLSENEL 408 (1077)
Q Consensus 331 L~~n~l~~~~p~~l~~l--~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l 408 (1077)
...+.+.+.....+..+ ++|+.|++++|.+.+..+..+..+++|+.|++.+|.+.+..+..+..+++|++|++++|.+
T Consensus 247 ~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l 326 (844)
T 3j0a_A 247 FGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLL 326 (844)
T ss_dssp SSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCC
T ss_pred CCCCCCCCCCHHHHHCCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCC
T ss_conf 44456688985565255547861898979945515863452589999998979818987968836888999898989978
Q ss_pred CCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCC
Q ss_conf 78856101034644502323666868889866784557678563675789964300112222475058866787775334
Q 001440 409 SGSIPYSFGNLTNMIVLSIYSNALSGAIPKEYGNLVKLTLLVLSYNQLQGPIPDLRNLTRLARVRLDRNHLTGNISESFG 488 (1077)
Q Consensus 409 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~ 488 (1077)
++..+..|..+++|+.|++++|.+....+..|..+++|++|++++|.+.+..
T Consensus 327 ~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~---------------------------- 378 (844)
T 3j0a_A 327 GELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIH---------------------------- 378 (844)
T ss_dssp SCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCS----------------------------
T ss_pred CCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCC----------------------------
T ss_conf 8518788468999998989899877628666137888999889899778616----------------------------
Q ss_pred CCCCCCEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC-CHHHCCCCCCCE
Q ss_conf 4555414023565224777767799899757981266235889988899999779973488468888-221117887848
Q 001440 489 IHSNLSYINLSHKKFYGEISFDWGKFPNLGTLDVSANNITGILPPEIGDSPQLKVLDLSSNHIVGEI-PSELGKLRSLIK 567 (1077)
Q Consensus 489 ~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~l~~~~~L~~ 567 (1077)
.+++|+.|++++|.+..+. . ....++.|++++|++.... ...+..+++|+.
T Consensus 379 ------------------------~~~~L~~L~l~~N~l~~l~-~---~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~ 430 (844)
T 3j0a_A 379 ------------------------FIPSIPDIFLSGNKLVTLP-K---INLTANLIHLSENRLENLDILYFLLRVPHLQI 430 (844)
T ss_dssp ------------------------SCCSCSEEEEESCCCCCCC-C---CCTTCCEEECCSCCCCSSTTHHHHTTCTTCCE
T ss_pred ------------------------CCCCCCHHCCCCCCCCCCC-C---CCCCCCEEECCCCCCCCCCHHHHHHCCCCCCE
T ss_conf ------------------------8898232005899723145-5---45543122145675345755666512776666
Q ss_pred EECCCCCCCCCCCH-HHHCCCCCCEEECCCCCCCC-----CCCCCCCCCCCCEEEEECCCCCCCCCCHHCCCCCCCCCEE
Q ss_conf 98259614577432-10001235623215774568-----8888544433450664103223587611013453346110
Q 001440 568 LTLNRNQFSGQLPT-ELGSLIQLEHLDLSSNRLSN-----SIPGSLGNLVKLYYLNLSNNQFSGEIPIKLEKFIHLSDLD 641 (1077)
Q Consensus 568 L~L~~N~l~~~~~~-~l~~l~~L~~L~Ls~N~l~~-----~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~L~~L~ 641 (1077)
|++++|++++..+. .+..+++|+.|++++|.++. ..+..|..+++|+.|+|++|.+++..+..|..+++|+.|+
T Consensus 431 L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 510 (844)
T 3j0a_A 431 LILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLS 510 (844)
T ss_dssp EEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEE
T ss_pred EECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHCCCHHHHHEEE
T ss_conf 66778712555543335668731002477773644101355355544755365777889856553955704501221569
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCC
Q ss_conf 14665899774001022321120245663456531012115664088314771469899
Q 001440 642 LSHNFLGEEIPSQVCSMQSLEKLNLAHNNLSGFIPRCFKEMHGLVYIDISYNKLHGPIP 700 (1077)
Q Consensus 642 Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~l~~l~~L~~l~l~~N~l~~~~~ 700 (1077)
|++|+++...+..+. ++|+.|++++|++++.+|..| .+|..+++++|++.+..+
T Consensus 511 Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~---~~L~~l~l~~Np~~C~c~ 564 (844)
T 3j0a_A 511 LNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVF---VSLSVLDITHNKFICECE 564 (844)
T ss_dssp EESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCC---SSCCEEEEEEECCCCSSS
T ss_pred CCCCCCCCCCHHHHH--CCCCEEECCCCCCCCCCHHHH---CCCCEEEECCCCCCCCCC
T ss_conf 999978745710110--045588898884788896683---776889931997025366
No 7
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=1.00 E-value=1 Score=483.93 Aligned_cols=523 Identities=21% Similarity=0.194 Sum_probs=350.9
Q ss_pred CCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCEEEC
Q ss_conf 98768976477323337836579999988837899888989998898676634145453457888997777575445531
Q 001440 108 PHLAYLDLRVNQIFGIIPSQIANNSKLKYLDLSSNSFSGTIPPQIGNLSMLKILYLSTNQFSGRIPPQIGHLSYLKALHL 187 (1077)
Q Consensus 108 ~~l~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~L 187 (1077)
+++++|+|++|.+.+..|..|+++++|++|+|++|.+++..|..|.++++|++|++++|.+.+..|..|.++++|++|++
T Consensus 33 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 112 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFF 112 (606)
T ss_dssp TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEEC
T ss_pred CCCCEEECCCCCCCCCCHHHHCCCCCCEEEECCCCCCCEECHHHCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEEC
T ss_conf 86758981587347179667256766528978898355248511368433676448898565458655234421537652
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCC--EEECCCCCCC
Q ss_conf 23468789899878877675798347767887787556766565688202334687786678888777--6871258888
Q 001440 188 FENGLSGSIPPSLGNLTNLAIMYLYNNSLSGSIPSEIGNLKSLSGLELGYNKLSGSMPLSLGNLPNLA--TLDLHDNSLS 265 (1077)
Q Consensus 188 ~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~--~L~L~~N~l~ 265 (1077)
++|.+++..+..++++++|++|++++|++++...+.+..+++|+.|++++|.+++..|..+..+++|+ .|++++|.++
T Consensus 113 ~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~ 192 (606)
T 3t6q_A 113 IQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA 192 (606)
T ss_dssp TTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCC
T ss_pred CCCCCCCCCCCHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHHHHCCCCEEEEECCCCCCC
T ss_conf 12676657810122378223898879834114765456876568777656844554965633221564038966798147
Q ss_pred CCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCC
Q ss_conf 88789888777540350789889899864237887855687678888887688768878862898338623301682334
Q 001440 266 GSIPLSFGNLTNLDILNLPHNSLSGSIPSEMGNLKSLYGLGLSFNKLSGSIPSSLGNLTKLTILYLSDNLLFGSIPCEIG 345 (1077)
Q Consensus 266 ~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~ 345 (1077)
+..|..|.. .+|+.|++++|. .++..+..+..+....+..+.+.. +....++.+.+ ..+.
T Consensus 193 ~~~~~~~~~-~~L~~L~l~~~~---~~~~~~~~l~~~~l~~l~~~~~~~-----------~~~~~i~~~~~-----~~l~ 252 (606)
T 3t6q_A 193 GIEPGAFDS-AVFQSLNFGGTQ---NLLVIFKGLKNSTIQSLWLGTFED-----------MDDEDISPAVF-----EGLC 252 (606)
T ss_dssp EECTTTTTT-CEEEEEECTTCS---CHHHHHHHTTTCEEEEEECCCCTT-----------SCCCCCCGGGG-----GGGG
T ss_pred CCCHHHHHH-CCCCCCCCCCCH---HHHHHHHHCCCCCHHHEECHHHCC-----------CCCCCCCHHHH-----CHHH
T ss_conf 548667300-100135567726---677776513356442200201102-----------64122686674-----3032
Q ss_pred CCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 54535488679985744589887887655568756877789996213478788846468887678856101034644502
Q 001440 346 NLRYLFYLELGDNKLSGSIPHSLGNLTNLATLYLFTNLLSGSIPSEIGNLNSLSDLGLSENELSGSIPYSFGNLTNMIVL 425 (1077)
Q Consensus 346 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 425 (1077)
.+ .|+.+++++|.+.+..+..+..+++|++|++.+|.+. .+|..+..+++|++|++++|.+.+..+..+..+++|+.|
T Consensus 253 ~~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 330 (606)
T 3t6q_A 253 EM-SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHL 330 (606)
T ss_dssp GS-EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEE
T ss_pred CC-CEEEEEEECCCCCCCCHHHHCCCCCCCEEECCCCCCC-CCCHHHCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEE
T ss_conf 07-5059994457658557777445667888956288267-778214165468889771687686760233015768988
Q ss_pred ECCCCCCCCCCC-CCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEECCCCCCCC
Q ss_conf 323666868889-8667845576785636757899643001122224750588667877753344555414023565224
Q 001440 426 SIYSNALSGAIP-KEYGNLVKLTLLVLSYNQLQGPIPDLRNLTRLARVRLDRNHLTGNISESFGIHSNLSYINLSHKKFY 504 (1077)
Q Consensus 426 ~l~~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~ 504 (1077)
++++|.+.+.++ ..+..+++|++|++++|.+.+... .+..+..+++|+.|++++|.+.
T Consensus 331 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~---------------------~~~~~~~l~~L~~L~l~~n~l~ 389 (606)
T 3t6q_A 331 SIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDC---------------------CNLQLRNLSHLQSLNLSYNEPL 389 (606)
T ss_dssp ECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEE---------------------STTTTTTCTTCCEEECCSCSCE
T ss_pred ECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCC---------------------CCHHCCCCCCCCEEECCCCCCC
T ss_conf 8989974443462455066758988788996664567---------------------5221056788898989899677
Q ss_pred CCCCCCCCCCCCCCEEECCCCCCCCCCCC-CCCCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCC---CC
Q ss_conf 77776779989975798126623588998-889999977997348846888822111788784898259614577---43
Q 001440 505 GEISFDWGKFPNLGTLDVSANNITGILPP-EIGDSPQLKVLDLSSNHIVGEIPSELGKLRSLIKLTLNRNQFSGQ---LP 580 (1077)
Q Consensus 505 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~L~~N~l~~~---~~ 580 (1077)
+..+..+..+++|++|++++|.+....+. .+..+++|+.|++++|.+....+..+..+++|++|++++|.+++. .+
T Consensus 390 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 469 (606)
T 3t6q_A 390 SLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKT 469 (606)
T ss_dssp EECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSS
T ss_pred CCCHHHHCCCCCCCEEECCCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCC
T ss_conf 57888734774577687888867775652124176558889898985577687787378878889898998885434543
Q ss_pred HHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHCCCCCCCCCEECCCCCCCCCCCCCCCCCCC
Q ss_conf 21000123562321577456888885444334506641032235876110134533461101466589977400102232
Q 001440 581 TELGSLIQLEHLDLSSNRLSNSIPGSLGNLVKLYYLNLSNNQFSGEIPIKLEKFIHLSDLDLSHNFLGEEIPSQVCSMQS 660 (1077)
Q Consensus 581 ~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~ 660 (1077)
..+..+++|+.|++++|.+++..+..|..+++|+.|++++|++++..+..+..++.| .|++++|+++...+..+..+++
T Consensus 470 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~ 548 (606)
T 3t6q_A 470 NSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQ 548 (606)
T ss_dssp CGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHT
T ss_pred HHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCC-EEECCCCCCCCCCHHHCCCCCC
T ss_conf 124048876688799996670686463265678889898980686896684756651-8987689414268766256778
Q ss_pred CCHHCCCCCCCCCC
Q ss_conf 11202456634565
Q 001440 661 LEKLNLAHNNLSGF 674 (1077)
Q Consensus 661 L~~L~l~~N~l~~~ 674 (1077)
|+.|++++|++.+.
T Consensus 549 L~~L~l~~N~~~c~ 562 (606)
T 3t6q_A 549 QRTINLRQNPLDCT 562 (606)
T ss_dssp SSEEECTTCCEECS
T ss_pred CCEEECCCCCCCCC
T ss_conf 78896779986166
No 8
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=482.94 Aligned_cols=530 Identities=23% Similarity=0.230 Sum_probs=358.7
Q ss_pred CCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC-CCCCCCCCCCCEEECCCCCCCCCCCC
Q ss_conf 85673241479983211467887533337864689998768976477323337-83657999998883789988898999
Q 001440 72 CAWFGIHCNHAGKVNSINLTSAGLIGTLHDFSFSSFPHLAYLDLRVNQIFGII-PSQIANNSKLKYLDLSSNSFSGTIPP 150 (1077)
Q Consensus 72 C~w~gv~C~~~~~v~~l~l~~~~~~~~l~~~~~~~l~~l~~L~L~~n~~~~~~-p~~~~~l~~L~~L~L~~n~~~~~~p~ 150 (1077)
|.|..|-+ ....+..|+++...+.+ +.+..|.++++|++|+|++|...+.+ |..|.++++|++|+|++|.+++..|.
T Consensus 14 ~~L~~vP~-lp~~l~~LdLs~N~i~~-i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~ 91 (844)
T 3j0a_A 14 CNLTQVPQ-VLNTTERLLLSFNYIRT-VTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPD 91 (844)
T ss_dssp CCSSCCCS-SCTTCCEEEEESCCCCE-ECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTT
T ss_pred CCCCCCCC-CCCCCCEEECCCCCCCC-CCHHHCCCCCCCEEEECCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHH
T ss_conf 99777898-99986888887786783-29667766213708867899774441977853787788887989958531976
Q ss_pred CCCCCCCCCEECCCCCCCCCCCCCC--CCCCCCCCEEECCCCCCCCCCC-CCCCCCCCCCEEECCCCCCCCCCCCCCCCC
Q ss_conf 8898676634145453457888997--7775754455312346878989-987887767579834776788778755676
Q 001440 151 QIGNLSMLKILYLSTNQFSGRIPPQ--IGHLSYLKALHLFENGLSGSIP-PSLGNLTNLAIMYLYNNSLSGSIPSEIGNL 227 (1077)
Q Consensus 151 ~~~~l~~L~~L~l~~n~~~~~~p~~--~~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l 227 (1077)
.|+++++|++|+|++|.+.+.+|.. +..+++|++|+|++|.+++..+ ..|+++++|+.|++++|.+++..+..+..+
T Consensus 92 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l 171 (844)
T 3j0a_A 92 AFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPL 171 (844)
T ss_dssp SSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHH
T ss_pred HCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHCCCCCEEECCCCCCCEECHHHCCCC
T ss_conf 71578665870176788973404676455667999888987864232566557638898989898984776678875355
Q ss_pred --CCCCEEEEECCCCCCCCCCCCCCCCC------CCEEECCCCCCCCCCCCCCCCC---CCCCEECCCCCCCCCCCCCCC
Q ss_conf --65656882023346877866788887------7768712588888878988877---754035078988989986423
Q 001440 228 --KSLSGLELGYNKLSGSMPLSLGNLPN------LATLDLHDNSLSGSIPLSFGNL---TNLDILNLPHNSLSGSIPSEM 296 (1077)
Q Consensus 228 --~~L~~L~l~~n~l~~~~p~~l~~l~~------L~~L~L~~N~l~~~~p~~~~~l---~~L~~L~L~~n~l~~~~p~~~ 296 (1077)
++|+.|++++|.+.+..|..+..+++ |+.|++++|.+++..+..+... ..+..+.++++.+..
T Consensus 172 ~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~------ 245 (844)
T 3j0a_A 172 QGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGA------ 245 (844)
T ss_dssp HHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBC------
T ss_pred CCCCCCEEECCCCCCCCCCCCCHHHCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCEECCCCCCCC------
T ss_conf 67750357897886665545533223772235740079657886865677888764274410011212122346------
Q ss_pred CCCCCCCEEECCCCCCCCCCCCCCCCC--CCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 788785568767888888768876887--886289833862330168233454535488679985744589887887655
Q 001440 297 GNLKSLYGLGLSFNKLSGSIPSSLGNL--TKLTILYLSDNLLFGSIPCEIGNLRYLFYLELGDNKLSGSIPHSLGNLTNL 374 (1077)
Q Consensus 297 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l--~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 374 (1077)
+.+.+.+.+.....+.++ ++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|
T Consensus 246 ---------~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L 316 (844)
T 3j0a_A 246 ---------GFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNL 316 (844)
T ss_dssp ---------SSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSC
T ss_pred ---------CCCCCCCCCCCHHHHHCCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHCCCCCC
T ss_conf ---------64445668898556525554786189897994551586345258999999897981898796883688899
Q ss_pred CEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCC
Q ss_conf 56875687778999621347878884646888767885610103464450232366686888986678455767856367
Q 001440 375 ATLYLFTNLLSGSIPSEIGNLNSLSDLGLSENELSGSIPYSFGNLTNMIVLSIYSNALSGAIPKEYGNLVKLTLLVLSYN 454 (1077)
Q Consensus 375 ~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N 454 (1077)
+.|++.+|.+.+..+..+..+++|+.|++++|.+....+..|..+++|+.|++++|.+++. ..+++|+.|++++|
T Consensus 317 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-----~~~~~L~~L~l~~N 391 (844)
T 3j0a_A 317 QVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-----HFIPSIPDIFLSGN 391 (844)
T ss_dssp CEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-----SSCCSCSEEEEESC
T ss_pred CEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCC-----CCCCCCCHHCCCCC
T ss_conf 9898989978851878846899999898989987762866613788899988989977861-----68898232005899
Q ss_pred CCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCC-CCCCCCCCCEEECCCCCCCCCCCC
Q ss_conf 5789964300112222475058866787775334455541402356522477776-779989975798126623588998
Q 001440 455 QLQGPIPDLRNLTRLARVRLDRNHLTGNISESFGIHSNLSYINLSHKKFYGEISF-DWGKFPNLGTLDVSANNITGILPP 533 (1077)
Q Consensus 455 ~l~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~-~~~~~~~L~~L~L~~n~l~~~~~~ 533 (1077)
++...+.. . .+++.+++++|.+...... .+..+++|++|++++|.+....+.
T Consensus 392 ~l~~l~~~---~------------------------~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 444 (844)
T 3j0a_A 392 KLVTLPKI---N------------------------LTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGD 444 (844)
T ss_dssp CCCCCCCC---C------------------------TTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSS
T ss_pred CCCCCCCC---C------------------------CCCCEEECCCCCCCCCCHHHHHHCCCCCCEEECCCCCCCCCCCC
T ss_conf 72314554---5------------------------54312214567534575566651277666666778712555543
Q ss_pred -CCCCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCC
Q ss_conf -8899999779973488468888221117887848982596145774321000123562321577456888885444334
Q 001440 534 -EIGDSPQLKVLDLSSNHIVGEIPSELGKLRSLIKLTLNRNQFSGQLPTELGSLIQLEHLDLSSNRLSNSIPGSLGNLVK 612 (1077)
Q Consensus 534 -~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 612 (1077)
.+..+++|+.|++++|.+....+. +..+..+..+++|+.|+|++|.+++..+..|..+++
T Consensus 445 ~~~~~~~~L~~L~Ls~N~l~~~~~~-------------------~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 505 (844)
T 3j0a_A 445 QTPSENPSLEQLFLGENMLQLAWET-------------------ELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTA 505 (844)
T ss_dssp SSSCSCTTCCBCEEESCCCSSSCCS-------------------CCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCS
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCC-------------------CCCHHHHCCCCCCCEEECCCCCCCCCCHHHCCCHHH
T ss_conf 3356687310024777736441013-------------------553555447553657778898565539557045012
Q ss_pred CEEEEECCCCCCCCCCHHCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCC
Q ss_conf 50664103223587611013453346110146658997740010223211202456634565
Q 001440 613 LYYLNLSNNQFSGEIPIKLEKFIHLSDLDLSHNFLGEEIPSQVCSMQSLEKLNLAHNNLSGF 674 (1077)
Q Consensus 613 L~~L~L~~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~ 674 (1077)
|+.|+|++|++++..+..+. ++|+.|++++|++++..+..+ .+|+.+++++|++.+.
T Consensus 506 L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~---~~L~~l~l~~Np~~C~ 562 (844)
T 3j0a_A 506 LRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVF---VSLSVLDITHNKFICE 562 (844)
T ss_dssp CSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCC---SSCCEEEEEEECCCCS
T ss_pred HHEEECCCCCCCCCCHHHHH--CCCCEEECCCCCCCCCCHHHH---CCCCEEEECCCCCCCC
T ss_conf 21569999978745710110--045588898884788896683---7768899319970253
No 9
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=1.00 E-value=1 Score=474.55 Aligned_cols=86 Identities=16% Similarity=0.302 Sum_probs=63.8
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC-CCCCCC--CCC------------CCEEECCCCCCCCCCCCCCCC
Q ss_conf 79998889999999986236999998889999999-999888--856------------732414799832114678875
Q 001440 31 SSNSTEEAHALLKWKTSLQNHNNKGSFLPSWTLNN-ATKISP--CAW------------FGIHCNHAGKVNSINLTSAGL 95 (1077)
Q Consensus 31 ~~~~~~~~~all~~k~~~~~~~~~~~~~~sW~~~~-~~~~~~--C~w------------~gv~C~~~~~v~~l~l~~~~~ 95 (1077)
.++..+|+.||++||+++.++ +|+... ....+| |+| .||+|+..+||++|+|.+.++
T Consensus 264 ~~~~~~d~~ALl~~k~~l~~~--------~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~~~~V~~L~Ls~~~L 335 (876)
T 4ecn_A 264 TAEYIKDYKALKAIWEALDGK--------NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGA 335 (876)
T ss_dssp CCHHHHHHHHHHHHHHHTTGG--------GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECTTSCEEEEECTTTCC
T ss_pred CCCCHHHHHHHHHHHHHCCCC--------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCEEEEECCCCCC
T ss_conf 546317899999999973799--------988689865336776403466654533576842836999798998724789
Q ss_pred CCCCCCCCCCCCCCCCEEEC-CCCCCCCCCC
Q ss_conf 33337864689998768976-4773233378
Q 001440 96 IGTLHDFSFSSFPHLAYLDL-RVNQIFGIIP 125 (1077)
Q Consensus 96 ~~~l~~~~~~~l~~l~~L~L-~~n~~~~~~p 125 (1077)
.|.+++. +++|++|++|+| ++|.+.|..|
T Consensus 336 ~G~ip~~-l~~L~~L~~LdLss~N~lsG~~~ 365 (876)
T 4ecn_A 336 KGRVPDA-IGQLTELKVLSFGTHSETVSGRL 365 (876)
T ss_dssp EEEECGG-GGGCTTCCEEESCCTTHHHHTTC
T ss_pred CCCCCHH-HHCCCCCEEEEECCCCCCCCCCC
T ss_conf 9948557-74155562843012563356664
No 10
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=1.00 E-value=1 Score=471.80 Aligned_cols=521 Identities=21% Similarity=0.206 Sum_probs=292.1
Q ss_pred CCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCEEEC
Q ss_conf 98768976477323337836579999988837899888989998898676634145453457888997777575445531
Q 001440 108 PHLAYLDLRVNQIFGIIPSQIANNSKLKYLDLSSNSFSGTIPPQIGNLSMLKILYLSTNQFSGRIPPQIGHLSYLKALHL 187 (1077)
Q Consensus 108 ~~l~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~L 187 (1077)
+++++|+|++|.+.+..+..|.++++|++|+|++|.+++..|..|.++++|++|++++|.+.+..|..|+++++|++|++
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 111 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA 111 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEEC
T ss_pred CCCCEEECCCCCCCEECHHHCCCCCCCCEEECCCCCCCCCCHHHHHCHHHCCEEECCCCCCCCCCHHHCCCCCCCCEEEC
T ss_conf 87678878889757737545557766748868877366439777306010688678798563048522078653788870
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCCCC-CCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCC----EEECCCC
Q ss_conf 2346878989987887767579834776788-7787556766565688202334687786678888777----6871258
Q 001440 188 FENGLSGSIPPSLGNLTNLAIMYLYNNSLSG-SIPSEIGNLKSLSGLELGYNKLSGSMPLSLGNLPNLA----TLDLHDN 262 (1077)
Q Consensus 188 ~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~-~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~----~L~L~~N 262 (1077)
++|.+++..+..++++++|++|++++|.+++ .+|..|+++++|+.|++++|.+++..+..++.+.+|+ +|++++|
T Consensus 112 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n 191 (606)
T 3vq2_A 112 VETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLN 191 (606)
T ss_dssp TTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTC
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCCCCEECHHHHHHCCCCCEEECCCCCCEECCHHHHHHHHCCCCCCCEEECCCC
T ss_conf 37755544511348988779896878852325306867326777788766885310573341212034200243004689
Q ss_pred CCCCCCCCCCCCCCCCCEECCCCCCCC-CCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCC
Q ss_conf 888887898887775403507898898-9986423788785568767888888768876887886289833862330168
Q 001440 263 SLSGSIPLSFGNLTNLDILNLPHNSLS-GSIPSEMGNLKSLYGLGLSFNKLSGSIPSSLGNLTKLTILYLSDNLLFGSIP 341 (1077)
Q Consensus 263 ~l~~~~p~~~~~l~~L~~L~L~~n~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p 341 (1077)
.+++..+..+... +|+.|++++|.+. +..|..+.+++.|+.+++..+.+.+.. .+.. +....+
T Consensus 192 ~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~--------~l~~-------~~~~~~ 255 (606)
T 3vq2_A 192 PIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDER--------NLEI-------FEPSIM 255 (606)
T ss_dssp CCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSC--------CCSC-------CCGGGG
T ss_pred CCCEECCCCCCCC-EEEEEECCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCC--------CCCC-------CCHHHH
T ss_conf 7532571105676-04335246785616677888602665652314111103677--------4102-------681776
Q ss_pred CCCCCCCCCCEEEC-CCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCC
Q ss_conf 23345453548867-99857445898878876555687568777899962134787888464688876788561010346
Q 001440 342 CEIGNLRYLFYLEL-GDNKLSGSIPHSLGNLTNLATLYLFTNLLSGSIPSEIGNLNSLSDLGLSENELSGSIPYSFGNLT 420 (1077)
Q Consensus 342 ~~l~~l~~L~~L~l-~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 420 (1077)
..+..+ .++.+++ ..|.+.+.+|. +..+++++.|++.+|.+.. +| .+..+++|+.|++++|.++ .+| .+ .++
T Consensus 256 ~~l~~l-~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~-l~-~l~~~~~L~~L~l~~n~l~-~lp-~~-~l~ 328 (606)
T 3vq2_A 256 EGLCDV-TIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIKY-LE-DVPKHFKWQSLSIIRCQLK-QFP-TL-DLP 328 (606)
T ss_dssp TTGGGS-EEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCCC-CC-CCCTTCCCSEEEEESCCCS-SCC-CC-CCS
T ss_pred HHHHHC-CHHHEECCCCCCCCCCCCC-CCCCCCCCEEEECCCCCHH-HH-HCCCCCCCCEEECCCCCCC-CCC-CC-CCC
T ss_conf 666543-4745012366555543222-3548878987714766044-35-4334011778976466676-546-67-887
Q ss_pred CCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEECCCC
Q ss_conf 44502323666868889866784557678563675789964300112222475058866787775334455541402356
Q 001440 421 NMIVLSIYSNALSGAIPKEYGNLVKLTLLVLSYNQLQGPIPDLRNLTRLARVRLDRNHLTGNISESFGIHSNLSYINLSH 500 (1077)
Q Consensus 421 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~ 500 (1077)
+|+.|++++|...... .+..+++|++|++++|.+.+... .
T Consensus 329 ~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~---------------------~----------------- 368 (606)
T 3vq2_A 329 FLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGC---------------------C----------------- 368 (606)
T ss_dssp SCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEE---------------------C-----------------
T ss_pred CCCEEECCCCCCCCCH--HHCCCCCCCEEECCCCCCCCCCC---------------------H-----------------
T ss_conf 5564454478685310--00248988879775873687752---------------------0-----------------
Q ss_pred CCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCC-HHHCCCCCCCEEECCCCCCCCCC
Q ss_conf 52247777677998997579812662358899888999997799734884688882-21117887848982596145774
Q 001440 501 KKFYGEISFDWGKFPNLGTLDVSANNITGILPPEIGDSPQLKVLDLSSNHIVGEIP-SELGKLRSLIKLTLNRNQFSGQL 579 (1077)
Q Consensus 501 n~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~~~~L~~L~L~~N~l~~~~ 579 (1077)
+..+..+++|++|++++|.+..+ +..+..+++|+.|++++|.+.+..+ ..+..+++|+.|++++|.+++..
T Consensus 369 -------~~~~~~~~~L~~L~L~~n~l~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 440 (606)
T 3vq2_A 369 -------SYSDLGTNSLRHLDLSFNGAIIM-SANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDF 440 (606)
T ss_dssp -------CHHHHCCSCCCEEECCSCSEEEE-CCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECC
T ss_pred -------HHHHCCCCCCCEEECCCCCCCCC-HHHCCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCC
T ss_conf -------12214677554867889953000-5540688888965898870587537645646213788989689787433
Q ss_pred CHHHHCCCCCCEEECCCCCCCC-CCCCCCCCCCCCEEEEECCCCCCCCCCHHCCCCCCCCCEECCCCCCCCCCCCCCCCC
Q ss_conf 3210001235623215774568-888854443345066410322358761101345334611014665899774001022
Q 001440 580 PTELGSLIQLEHLDLSSNRLSN-SIPGSLGNLVKLYYLNLSNNQFSGEIPIKLEKFIHLSDLDLSHNFLGEEIPSQVCSM 658 (1077)
Q Consensus 580 ~~~l~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l 658 (1077)
+..+..+++|+.|++++|.+++ ..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|++.+..+..+..+
T Consensus 441 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 520 (606)
T 3vq2_A 441 DGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQL 520 (606)
T ss_dssp TTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTC
T ss_pred HHHHCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHCCCC
T ss_conf 55534778789898989837985467760457889989898885776486561546468989898995787487770688
Q ss_pred CCCCHHCCCCCCCCCCCCHHHHCCC-CCCEEECCCCCCCCCCC
Q ss_conf 3211202456634565310121156-64088314771469899
Q 001440 659 QSLEKLNLAHNNLSGFIPRCFKEMH-GLVYIDISYNKLHGPIP 700 (1077)
Q Consensus 659 ~~L~~L~l~~N~l~~~~~~~l~~l~-~L~~l~l~~N~l~~~~~ 700 (1077)
++|++|++++|+++ .+|..+..++ +|+.+++++|++.+..+
T Consensus 521 ~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~ 562 (606)
T 3vq2_A 521 YSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICE 562 (606)
T ss_dssp TTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred CCCCEEECCCCCCC-CCCHHHHHHCCCCCEEECCCCCCCCCCC
T ss_conf 76898889898376-6687675210217488762898664776
Done!