BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001442
(1076 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2OT8|A Chain A, Karyopherin Beta2TRANSPORTIN-Hnrnpm Nls Complex
pdb|2OT8|B Chain B, Karyopherin Beta2TRANSPORTIN-Hnrnpm Nls Complex
pdb|4FDD|A Chain A, Crystal Structure Of Kap Beta2-Py-Nls
pdb|4H1K|A Chain A, Crystal Structure Of Human Kap-Beta2 Bound To The Nls Of
Saccharomyces Cerevisiae Nab2
Length = 852
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 111/487 (22%), Positives = 184/487 (37%), Gaps = 47/487 (9%)
Query: 71 PEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSE 130
P RA +L+ + ++ + WP L S L S + E A +K+C+ +E
Sbjct: 104 PLIRATVGILITTIASKGELQNWPDLLPKLCSLLDSEDYNTC--EGAFGALQKICEDSAE 161
Query: 131 LASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLIINFIQCLTSSADRDRFQDL 190
+ + + + ++P Q S K++ A Q II+ Q L D ++L
Sbjct: 162 ILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHID-SFIENL 220
Query: 191 LPLMMRTLTESLNNGNXXXXXXXXXXXXXXXGTEPRFLRR--QLVDVVGSMLQIAEAESL 248
L G+ E R R + ++V MLQ +
Sbjct: 221 FALA----------GDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQ--RTQDQ 268
Query: 249 EEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETED 308
+E A EF +TLAE ++R LP +L +L++ + + D + + E
Sbjct: 269 DENVALEACEFWLTLAEQPICKDVLVRHLP----KLIPVLVNGMKYSDIDIILLKGDVEG 324
Query: 309 EDAGES--SNYSVGQEC----LDRLAIALGGNTIVPVASEQLPAYLAAPEWXXXXXXXXX 362
G+ S++++ ++C LD LA + + ++P L L EW
Sbjct: 325 GSGGDDTISDWNL-RKCSAAALDVLA-NVYRDELLPHILPLLKELLFHHEWVVKESGILV 382
Query: 363 XXXXXEGCAKVMVKNLEQVLSMVLNSFRDPHPRVR----WAAINAIGQLSTDLGPDLQNQ 418
EGC + M+ L +++ ++ D VR W ++ PD
Sbjct: 383 LGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCW-TLSRYAHWVVSQPPD--TY 439
Query: 419 FHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGK 478
P + L +D N RVQ A SA E E L PYL I+ L+ +
Sbjct: 440 LKPLMTELLKRILD--SNKRVQEAACSAFATLEEEACTE-LVPYLAYILDTLVFAFSKYQ 496
Query: 479 QMVQEGALTALASVADSSQEHFQK--YYDAVMPFL--KAILVNATDKSNRMLRAKSMECI 534
A+ ++ADS H K Y +MP L K ++ DK L +EC+
Sbjct: 497 HKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPL----LECL 552
Query: 535 SLVGMAV 541
S V A+
Sbjct: 553 SSVATAL 559
Score = 34.3 bits (77), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 37/167 (22%), Positives = 68/167 (40%), Gaps = 6/167 (3%)
Query: 845 SSYLTPMWG--KDKTAEERRIAICIFDDVAEQCREAALKYYETYLPFLLEACNDENQDVR 902
S+ LT M+ +DK E R+ + + D+ + C + ++P L N E V
Sbjct: 628 SNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEFISVC 687
Query: 903 QAAVYGLGVCAEFGGSVVKPLVGEALSRLNVVIRHPNALQPENLMAYDN-AVSALGKICQ 961
A + +G + G ++P + L +L +I PN P+ L+ + LG +C
Sbjct: 688 NNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPNT--PKTLLENTAITIGRLGYVCP 745
Query: 962 FHRDSIDAAQVVPAWLNCLPIKGDLIEAKIVHEQLCSMVERSDSDLL 1008
+ Q + W L D E +C+M+ + S ++
Sbjct: 746 QEVAPM-LQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPSGVI 791
>pdb|2H4M|A Chain A, Karyopherin Beta2TRANSPORTIN-M9nls
pdb|2H4M|B Chain B, Karyopherin Beta2TRANSPORTIN-M9nls
Length = 865
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 112/495 (22%), Positives = 182/495 (36%), Gaps = 50/495 (10%)
Query: 71 PEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSE 130
P RA +L+ + ++ + WP L S L S + E A +K+C+ +E
Sbjct: 104 PLIRATVGILITTIASKGELQNWPDLLPKLCSLLDSEDYNTC--EGAFGALQKICEDSAE 161
Query: 131 LASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLIINFIQCLTSSADRDRFQDL 190
+ + + + ++P Q S K++ A Q II+ Q L D ++L
Sbjct: 162 ILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHID-SFIENL 220
Query: 191 LPLMMRTLTESLNNGNXXXXXXXXXXXXXXXGTEPRFLRR--QLVDVVGSMLQIAEAESL 248
L G+ E R R + ++V MLQ +
Sbjct: 221 FALA----------GDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQ--RTQDQ 268
Query: 249 EEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRL-----FAILMSMLL--DIEDDPLW 301
+E A EF +TLAE ++R LP+ I L ++ + +LL D+E+D
Sbjct: 269 DENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEEDETI 328
Query: 302 HSAETE-------DEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWX 354
+E + + + + LD LA + + ++P L L EW
Sbjct: 329 PDSEQDIGGSGGSGDTISDWNLRKCSAAALDVLA-NVYRDELLPHILPLLKELLFHHEWV 387
Query: 355 XXXXXXXXXXXXXEGCAKVMVKNLEQVLSMVLNSFRDPHPRVR----WAAINAIGQLSTD 410
EGC + M+ L +++ ++ D VR W ++
Sbjct: 388 VKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCW-TLSRYAHWVVS 446
Query: 411 LGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKL 470
PD P + L +D N RVQ A SA E E L PYL I+ L
Sbjct: 447 QPPD--TYLKPLMTELLKRILD--SNKRVQEAACSAFATLEEEACTE-LVPYLAYILDTL 501
Query: 471 LVLLQNGKQMVQEGALTALASVADSSQEHFQK--YYDAVMPFL--KAILVNATDKSNRML 526
+ + A+ ++ADS H K Y +MP L K ++ DK L
Sbjct: 502 VFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPL 561
Query: 527 RAKSMECISLVGMAV 541
+EC+S V A+
Sbjct: 562 ----LECLSSVATAL 572
Score = 34.3 bits (77), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 37/167 (22%), Positives = 68/167 (40%), Gaps = 6/167 (3%)
Query: 845 SSYLTPMWG--KDKTAEERRIAICIFDDVAEQCREAALKYYETYLPFLLEACNDENQDVR 902
S+ LT M+ +DK E R+ + + D+ + C + ++P L N E V
Sbjct: 641 SNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEFISVC 700
Query: 903 QAAVYGLGVCAEFGGSVVKPLVGEALSRLNVVIRHPNALQPENLMAYDN-AVSALGKICQ 961
A + +G + G ++P + L +L +I PN P+ L+ + LG +C
Sbjct: 701 NNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPNT--PKTLLENTAITIGRLGYVCP 758
Query: 962 FHRDSIDAAQVVPAWLNCLPIKGDLIEAKIVHEQLCSMVERSDSDLL 1008
+ Q + W L D E +C+M+ + S ++
Sbjct: 759 QEVAPM-LQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPSGVI 804
>pdb|1UKL|A Chain A, Crystal Structure Of Importin-Beta And Srebp-2 Complex
pdb|1UKL|B Chain B, Crystal Structure Of Importin-Beta And Srebp-2 Complex
Length = 876
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 56/240 (23%), Positives = 103/240 (42%), Gaps = 29/240 (12%)
Query: 379 EQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPR 438
E ++ +V NS +D +P V+ + + +L L Q + H Q D Q
Sbjct: 530 ESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVL----QMESHIQ------STSDRIQFND 579
Query: 439 VQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQN--GKQMVQEGALTALASVADSS 496
+Q+ + + N + D +++ LL + Q+ G VQE AL A++++ +
Sbjct: 580 LQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVL 639
Query: 497 QEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVG------KDKFRDDA 550
F KY +A PFL L N A+ C++ VG+ VG +
Sbjct: 640 GGEFLKYMEAFKPFLGIGLKN---------YAEYQVCLAAVGL-VGDLCRALQSNILPFC 689
Query: 551 KQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPD 610
+VM++L+ G++ +L + + +G +F Y+ VV+ L Q++Q + D
Sbjct: 690 DEVMQLLLENLGNE-NVHRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQASQAQVD 748
Score = 33.1 bits (74), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 44/89 (49%), Gaps = 9/89 (10%)
Query: 73 ARAMAAVLLRKLLTRDDSFL-------WPRLSLHTQSSLKSMLLQSIQLESAKSISKKLC 125
AR A + ++ LT D + W + + + +K+ +LQ++ E+ + S C
Sbjct: 53 ARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTETYRPSSASQC 112
Query: 126 DTVSELASNILPENGWPELLPFMFQCVSS 154
V+ +A +P + WPEL+P + V++
Sbjct: 113 --VAGIACAEIPVSQWPELIPQLVANVTN 139
>pdb|2QNA|A Chain A, Crystal Structure Of Human Importin-Beta (127-876) In
Complex With The Ibb-Domain Of Snurportin1 (1-65)
Length = 762
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 56/240 (23%), Positives = 103/240 (42%), Gaps = 29/240 (12%)
Query: 379 EQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPR 438
E ++ +V NS +D +P V+ + + +L L Q + H Q D Q
Sbjct: 405 ESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVL----QMESHIQ------STSDRIQFND 454
Query: 439 VQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQN--GKQMVQEGALTALASVADSS 496
+Q+ + + N + D +++ LL + Q+ G VQE AL A++++ +
Sbjct: 455 LQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVL 514
Query: 497 QEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVG------KDKFRDDA 550
F KY +A PFL L N A+ C++ VG+ VG +
Sbjct: 515 GGEFLKYMEAFKPFLGIGLKN---------YAEYQVCLAAVGL-VGDLCRALQSNIIPFC 564
Query: 551 KQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPD 610
+VM++L+ G++ +L + + +G +F Y+ VV+ L Q++Q + D
Sbjct: 565 DEVMQLLLENLGNE-NVHRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQASQAQVD 623
>pdb|1QGK|A Chain A, Structure Of Importin Beta Bound To The Ibb Domain Of
Importin Alpha
pdb|1QGR|A Chain A, Structure Of Importin Beta Bound To The Ibb Domain Of
Importin Alpha (Ii Crystal Form, Grown At Low Ph)
Length = 876
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 56/240 (23%), Positives = 103/240 (42%), Gaps = 29/240 (12%)
Query: 379 EQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPR 438
E ++ +V NS +D +P V+ + + +L L Q + H Q D Q
Sbjct: 530 ESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVL----QMESHIQ------STSDRIQFND 579
Query: 439 VQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQN--GKQMVQEGALTALASVADSS 496
+Q+ + + N + D +++ LL + Q+ G VQE AL A++++ +
Sbjct: 580 LQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVL 639
Query: 497 QEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVG------KDKFRDDA 550
F KY +A PFL L N A+ C++ VG+ VG +
Sbjct: 640 GGEFLKYMEAFKPFLGIGLKN---------YAEYQVCLAAVGL-VGDLCRALQSNIIPFC 689
Query: 551 KQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPD 610
+VM++L+ G++ +L + + +G +F Y+ VV+ L Q++Q + D
Sbjct: 690 DEVMQLLLENLGNE-NVHRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQASQAQVD 748
Score = 33.9 bits (76), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 43/89 (48%), Gaps = 9/89 (10%)
Query: 73 ARAMAAVLLRKLLTRDDSFL-------WPRLSLHTQSSLKSMLLQSIQLESAKSISKKLC 125
AR A + ++ LT D + W + + + +K+ +L ++ E+ + S C
Sbjct: 53 ARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLHTLGTETYRPSSASQC 112
Query: 126 DTVSELASNILPENGWPELLPFMFQCVSS 154
V+ +A +P N WPEL+P + V++
Sbjct: 113 --VAGIACAEIPVNQWPELIPQLVANVTN 139
>pdb|2P8Q|A Chain A, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb- Domain
pdb|2Q5D|A Chain A, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb-Domain Second Crystal Form
pdb|2Q5D|B Chain B, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb-Domain Second Crystal Form
pdb|3LWW|A Chain A, Structure Of An Open And Closed Conformation Of Human
Importin Beta Bound To The Snurportin1 Ibb-Domain
Trapped In The Same Crystallographic Asymmetric Unit
pdb|3LWW|C Chain C, Structure Of An Open And Closed Conformation Of Human
Importin Beta Bound To The Snurportin1 Ibb-Domain
Trapped In The Same Crystallographic Asymmetric Unit
Length = 876
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 56/240 (23%), Positives = 103/240 (42%), Gaps = 29/240 (12%)
Query: 379 EQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPR 438
E ++ +V NS +D +P V+ + + +L L Q + H Q D Q
Sbjct: 530 ESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVL----QMESHIQ------STSDRIQFND 579
Query: 439 VQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQN--GKQMVQEGALTALASVADSS 496
+Q+ + + N + D +++ LL + Q+ G VQE AL A++++ +
Sbjct: 580 LQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVL 639
Query: 497 QEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVG------KDKFRDDA 550
F KY +A PFL L N A+ C++ VG+ VG +
Sbjct: 640 GGEFLKYMEAFKPFLGIGLKN---------YAEYQVCLAAVGL-VGDLCRALQSNIIPFC 689
Query: 551 KQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPD 610
+VM++L+ G++ +L + + +G +F Y+ VV+ L Q++Q + D
Sbjct: 690 DEVMQLLLENLGNE-NVHRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQASQAQVD 748
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 44/89 (49%), Gaps = 9/89 (10%)
Query: 73 ARAMAAVLLRKLLTRDDSFL-------WPRLSLHTQSSLKSMLLQSIQLESAKSISKKLC 125
AR A + ++ LT D + W + + + +K+ +LQ++ E+ + S C
Sbjct: 53 ARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTETYRPSSASQC 112
Query: 126 DTVSELASNILPENGWPELLPFMFQCVSS 154
V+ +A +P N WPEL+P + V++
Sbjct: 113 --VAGIACAEIPVNQWPELIPQLVANVTN 139
>pdb|2QMR|A Chain A, Karyopherin Beta2TRANSPORTIN
pdb|2QMR|B Chain B, Karyopherin Beta2TRANSPORTIN
pdb|2QMR|C Chain C, Karyopherin Beta2TRANSPORTIN
pdb|2QMR|D Chain D, Karyopherin Beta2TRANSPORTIN
pdb|2Z5J|A Chain A, Free Transportin 1
pdb|2Z5K|A Chain A, Complex Of Transportin 1 With Tap Nls
pdb|2Z5M|A Chain A, Complex Of Transportin 1 With Tap Nls, Crystal Form 2
pdb|2Z5N|A Chain A, Complex Of Transportin 1 With Hnrnp D Nls
pdb|2Z5O|A Chain A, Complex Of Transportin 1 With Jktbp Nls
Length = 890
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 117/521 (22%), Positives = 191/521 (36%), Gaps = 77/521 (14%)
Query: 71 PEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSE 130
P RA +L+ + ++ + WP L S L S + E A +K+C+ +E
Sbjct: 104 PLIRATVGILITTIASKGELQNWPDLLPKLCSLLDSEDYNTC--EGAFGALQKICEDSAE 161
Query: 131 LASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLIINFIQCLTSSADRDRFQDL 190
+ + + + ++P Q S K++ A Q II+ Q L D ++L
Sbjct: 162 ILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHID-SFIENL 220
Query: 191 LPLMMRTLTESLNNGNXXXXXXXXXXXXXXXGTEPRFLRR--QLVDVVGSMLQIAEAESL 248
L G+ E R R + ++V MLQ +
Sbjct: 221 FALA----------GDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQ--RTQDQ 268
Query: 249 EEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRL-----FAILMSMLL--DIEDD--- 298
+E A EF +TLAE ++R LP+ I L ++ + +LL D+E+D
Sbjct: 269 DENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEEDETI 328
Query: 299 --------PLWHSAETEDEDAGES------------------SNYSVGQEC----LDRLA 328
P +H + T + E S++++ ++C LD LA
Sbjct: 329 PDSEQDIRPRFHRSRTVAQQHDEDGIEEEDDDDDEIDDDDTISDWNL-RKCSAAALDVLA 387
Query: 329 IALGGNTIVPVASEQLPAYLAAPEWXXXXXXXXXXXXXXEGCAKVMVKNLEQVLSMVLNS 388
+ + ++P L L EW EGC + M+ L +++ ++
Sbjct: 388 -NVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQC 446
Query: 389 FRDPHPRVR----WAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAA 444
D VR W ++ PD P + L +D N RVQ A
Sbjct: 447 LSDKKALVRSITCW-TLSRYAHWVVSQPPD--TYLKPLMTELLKRILD--SNKRVQEAAC 501
Query: 445 SAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQK-- 502
SA E E L PYL I+ L+ + A+ ++ADS H K
Sbjct: 502 SAFATLEEEACTE-LVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPE 560
Query: 503 YYDAVMPFL--KAILVNATDKSNRMLRAKSMECISLVGMAV 541
Y +MP L K ++ DK L +EC+S V A+
Sbjct: 561 YIQMLMPPLIQKWNMLKDEDKDLFPL----LECLSSVATAL 597
Score = 34.3 bits (77), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 37/167 (22%), Positives = 68/167 (40%), Gaps = 6/167 (3%)
Query: 845 SSYLTPMWG--KDKTAEERRIAICIFDDVAEQCREAALKYYETYLPFLLEACNDENQDVR 902
S+ LT M+ +DK E R+ + + D+ + C + ++P L N E V
Sbjct: 666 SNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEFISVC 725
Query: 903 QAAVYGLGVCAEFGGSVVKPLVGEALSRLNVVIRHPNALQPENLMAYDN-AVSALGKICQ 961
A + +G + G ++P + L +L +I PN P+ L+ + LG +C
Sbjct: 726 NNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPNT--PKTLLENTAITIGRLGYVCP 783
Query: 962 FHRDSIDAAQVVPAWLNCLPIKGDLIEAKIVHEQLCSMVERSDSDLL 1008
+ Q + W L D E +C+M+ + S ++
Sbjct: 784 QEVAPM-LQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPSGVI 829
>pdb|4GPT|C Chain C, Crystal Structure Of Kpt251 In Complex With
Crm1-ran-ranbp1
pdb|4GMX|C Chain C, Crystal Structure Of Kpt185 In Complex With
Crm1-Ran-Ranbp1
Length = 1060
Score = 38.9 bits (89), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 72/155 (46%), Gaps = 8/155 (5%)
Query: 20 DSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQRSPHPEARAMAAV 79
D A + ++S S Q+ +A+ + L K QD K +LQ S +P+++ +A
Sbjct: 14 DIALLDQVVSTFYQGSGVQQKQAQEI--LTKFQDNPDAWQKADQILQFSTNPQSKFIALS 71
Query: 80 LLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCD----TVSELASNI 135
+L KL+TR L + ++ + M++ Q + K L + T+ ++
Sbjct: 72 ILDKLITRKWKLLPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQE 131
Query: 136 LPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQL 170
P+N WPE +P + SS SV + E+ ++ L
Sbjct: 132 WPQN-WPEFIPELIGS-SSSSVNVCENNMIVLKLL 164
>pdb|4HB4|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(537dltvk541/glceq)-ran-ranbp1
Length = 1023
Score = 38.5 bits (88), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 72/155 (46%), Gaps = 8/155 (5%)
Query: 20 DSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQRSPHPEARAMAAV 79
D A + ++S S Q+ +A+ + L K QD K +LQ S +P+++ +A
Sbjct: 14 DIALLDQVVSTFYQGSGVQQKQAQEI--LTKFQDNPDAWQKADQILQFSTNPQSKFIALS 71
Query: 80 LLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCD----TVSELASNI 135
+L KL+TR L + ++ + M++ Q + K L + T+ ++
Sbjct: 72 ILDKLITRKWKLLPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQE 131
Query: 136 LPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQL 170
P+N WPE +P + SS SV + E+ ++ L
Sbjct: 132 WPQN-WPEFIPELIGS-SSSSVNVCENNMIVLKLL 164
>pdb|4HAT|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1- Ran-ranbp1
pdb|4HAU|C Chain C, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1- Ran-ranbp1
pdb|4HAV|C Chain C, Crystal Structure Of Crm1 Inhibitor Anguinomycin A In
Complex With Crm1-ran-ranbp1
Length = 1023
Score = 38.5 bits (88), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 72/155 (46%), Gaps = 8/155 (5%)
Query: 20 DSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQRSPHPEARAMAAV 79
D A + ++S S Q+ +A+ + L K QD K +LQ S +P+++ +A
Sbjct: 14 DIALLDQVVSTFYQGSGVQQKQAQEI--LTKFQDNPDAWQKADQILQFSTNPQSKFIALS 71
Query: 80 LLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCD----TVSELASNI 135
+L KL+TR L + ++ + M++ Q + K L + T+ ++
Sbjct: 72 ILDKLITRKWKLLPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQE 131
Query: 136 LPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQL 170
P+N WPE +P + SS SV + E+ ++ L
Sbjct: 132 WPQN-WPEFIPELIGS-SSSSVNVCENNMIVLKLL 164
>pdb|4HB3|C Chain C, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In
Excess Crm1 Inhibitor Leptomycin B
Length = 1023
Score = 38.5 bits (88), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 72/155 (46%), Gaps = 8/155 (5%)
Query: 20 DSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQRSPHPEARAMAAV 79
D A + ++S S Q+ +A+ + L K QD K +LQ S +P+++ +A
Sbjct: 14 DIALLDQVVSTFYQGSGVQQKQAQEI--LTKFQDNPDAWQKADQILQFSTNPQSKFIALS 71
Query: 80 LLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCD----TVSELASNI 135
+L KL+TR L + ++ + M++ Q + K L + T+ ++
Sbjct: 72 ILDKLITRKWKLLPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQE 131
Query: 136 LPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQL 170
P+N WPE +P + SS SV + E+ ++ L
Sbjct: 132 WPQN-WPEFIPELIGS-SSSSVNVCENNMIVLKLL 164
>pdb|4HB2|C Chain C, Crystal Structure Of Crm1-ran-ranbp1
Length = 1023
Score = 38.5 bits (88), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 72/155 (46%), Gaps = 8/155 (5%)
Query: 20 DSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQRSPHPEARAMAAV 79
D A + ++S S Q+ +A+ + L K QD K +LQ S +P+++ +A
Sbjct: 14 DIALLDQVVSTFYQGSGVQQKQAQEI--LTKFQDNPDAWQKADQILQFSTNPQSKFIALS 71
Query: 80 LLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCD----TVSELASNI 135
+L KL+TR L + ++ + M++ Q + K L + T+ ++
Sbjct: 72 ILDKLITRKWKLLPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQE 131
Query: 136 LPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQL 170
P+N WPE +P + SS SV + E+ ++ L
Sbjct: 132 WPQN-WPEFIPELIGS-SSSSVNVCENNMIVLKLL 164
>pdb|4HAY|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548e,k579q)-ran-ranbp1
Length = 1023
Score = 38.5 bits (88), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 72/155 (46%), Gaps = 8/155 (5%)
Query: 20 DSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQRSPHPEARAMAAV 79
D A + ++S S Q+ +A+ + L K QD K +LQ S +P+++ +A
Sbjct: 14 DIALLDQVVSTFYQGSGVQQKQAQEI--LTKFQDNPDAWQKADQILQFSTNPQSKFIALS 71
Query: 80 LLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCD----TVSELASNI 135
+L KL+TR L + ++ + M++ Q + K L + T+ ++
Sbjct: 72 ILDKLITRKWKLLPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQE 131
Query: 136 LPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQL 170
P+N WPE +P + SS SV + E+ ++ L
Sbjct: 132 WPQN-WPEFIPELIGS-SSSSVNVCENNMIVLKLL 164
>pdb|4HB0|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With
Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1
Length = 1023
Score = 38.5 bits (88), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 72/155 (46%), Gaps = 8/155 (5%)
Query: 20 DSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQRSPHPEARAMAAV 79
D A + ++S S Q+ +A+ + L K QD K +LQ S +P+++ +A
Sbjct: 14 DIALLDQVVSTFYQGSGVQQKQAQEI--LTKFQDNPDAWQKADQILQFSTNPQSKFIALS 71
Query: 80 LLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCD----TVSELASNI 135
+L KL+TR L + ++ + M++ Q + K L + T+ ++
Sbjct: 72 ILDKLITRKWKLLPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQE 131
Query: 136 LPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQL 170
P+N WPE +P + SS SV + E+ ++ L
Sbjct: 132 WPQN-WPEFIPELIGS-SSSSVNVCENNMIVLKLL 164
>pdb|4HAZ|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1
Length = 1023
Score = 38.5 bits (88), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 72/155 (46%), Gaps = 8/155 (5%)
Query: 20 DSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQRSPHPEARAMAAV 79
D A + ++S S Q+ +A+ + L K QD K +LQ S +P+++ +A
Sbjct: 14 DIALLDQVVSTFYQGSGVQQKQAQEI--LTKFQDNPDAWQKADQILQFSTNPQSKFIALS 71
Query: 80 LLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCD----TVSELASNI 135
+L KL+TR L + ++ + M++ Q + K L + T+ ++
Sbjct: 72 ILDKLITRKWKLLPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQE 131
Query: 136 LPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQL 170
P+N WPE +P + SS SV + E+ ++ L
Sbjct: 132 WPQN-WPEFIPELIGS-SSSSVNVCENNMIVLKLL 164
>pdb|3M1I|C Chain C, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With
Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp)
Length = 1049
Score = 38.5 bits (88), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 72/155 (46%), Gaps = 8/155 (5%)
Query: 20 DSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQRSPHPEARAMAAV 79
D A + ++S S Q+ +A+ + L K QD K +LQ S +P+++ +A
Sbjct: 14 DIALLDQVVSTFYQGSGVQQKQAQEI--LTKFQDNPDAWQKADQILQFSTNPQSKFIALS 71
Query: 80 LLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCD----TVSELASNI 135
+L KL+TR L + ++ + M++ Q + K L + T+ ++
Sbjct: 72 ILDKLITRKWKLLPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQE 131
Query: 136 LPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQL 170
P+N WPE +P + SS SV + E+ ++ L
Sbjct: 132 WPQN-WPEFIPELIGS-SSSSVNVCENNMIVLKLL 164
>pdb|4HAX|C Chain C, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1(k579a)-ran-ranbp1
Length = 1023
Score = 38.5 bits (88), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 72/155 (46%), Gaps = 8/155 (5%)
Query: 20 DSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQRSPHPEARAMAAV 79
D A + ++S S Q+ +A+ + L K QD K +LQ S +P+++ +A
Sbjct: 14 DIALLDQVVSTFYQGSGVQQKQAQEI--LTKFQDNPDAWQKADQILQFSTNPQSKFIALS 71
Query: 80 LLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCD----TVSELASNI 135
+L KL+TR L + ++ + M++ Q + K L + T+ ++
Sbjct: 72 ILDKLITRKWKLLPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQE 131
Query: 136 LPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQL 170
P+N WPE +P + SS SV + E+ ++ L
Sbjct: 132 WPQN-WPEFIPELIGS-SSSSVNVCENNMIVLKLL 164
>pdb|4HAW|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548a)-ran-ranbp1
Length = 1023
Score = 38.5 bits (88), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 72/155 (46%), Gaps = 8/155 (5%)
Query: 20 DSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQRSPHPEARAMAAV 79
D A + ++S S Q+ +A+ + L K QD K +LQ S +P+++ +A
Sbjct: 14 DIALLDQVVSTFYQGSGVQQKQAQEI--LTKFQDNPDAWQKADQILQFSTNPQSKFIALS 71
Query: 80 LLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCD----TVSELASNI 135
+L KL+TR L + ++ + M++ Q + K L + T+ ++
Sbjct: 72 ILDKLITRKWKLLPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQE 131
Query: 136 LPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQL 170
P+N WPE +P + SS SV + E+ ++ L
Sbjct: 132 WPQN-WPEFIPELIGS-SSSSVNVCENNMIVLKLL 164
>pdb|3VYC|A Chain A, Crystal Structure Of Unliganded Saccharomyces Cerevisiae
Crm1 (Xpo1p)
Length = 1033
Score = 38.5 bits (88), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 72/155 (46%), Gaps = 8/155 (5%)
Query: 20 DSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQRSPHPEARAMAAV 79
D A + ++S S Q+ +A+ + L K QD K +LQ S +P+++ +A
Sbjct: 12 DIALLDQVVSTFYQGSGVQQKQAQEI--LTKFQDNPDAWQKADQILQFSTNPQSKFIALS 69
Query: 80 LLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCD----TVSELASNI 135
+L KL+TR L + ++ + M++ Q + K L + T+ ++
Sbjct: 70 ILDKLITRKWKLLPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQE 129
Query: 136 LPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQL 170
P+N WPE +P + SS SV + E+ ++ L
Sbjct: 130 WPQN-WPEFIPELIGS-SSSSVNVCENNMIVLKLL 162
>pdb|3GB8|A Chain A, Crystal Structure Of Crm1SNURPORTIN-1 Complex
Length = 1071
Score = 37.4 bits (85), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 50/218 (22%), Positives = 83/218 (38%), Gaps = 25/218 (11%)
Query: 398 WAAIN----AIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSEN 453
W +N AIG +S + + + +F V+ L G + + +A AS ++ +
Sbjct: 491 WKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIM-YIVG 549
Query: 454 CTPEILT---PYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHF-QKYYDAVMP 509
P L +L +V+KL + VQ+ A +A + HF Q VMP
Sbjct: 550 QYPRFLRAHWKFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMP 609
Query: 510 FLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSL--------- 560
F+ IL N + + VG +G + + ++E M L
Sbjct: 610 FIDEILNNINTIICDLQPQQVHTFYEAVGYMIGAQTDQTVQEHLIEKYMLLPNQVWDSII 669
Query: 561 QGSQMETD---DPTT----SYMLQAWARLCKCLGQDFL 591
Q + D DP T +L+ R CK +G F+
Sbjct: 670 QQATKNVDILKDPETVKQLGSILKTNVRACKAVGHPFV 707
>pdb|3GJX|A Chain A, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
pdb|3GJX|D Chain D, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
pdb|3NBY|A Chain A, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBY|D Chain D, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBZ|A Chain A, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NBZ|D Chain D, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NC0|A Chain A, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
pdb|3NC0|D Chain D, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
pdb|3NC1|A Chain A, Crystal Structure Of The Crm1-Rangtp Complex
Length = 1073
Score = 37.4 bits (85), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 50/218 (22%), Positives = 83/218 (38%), Gaps = 25/218 (11%)
Query: 398 WAAIN----AIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSEN 453
W +N AIG +S + + + +F V+ L G + + +A AS ++ +
Sbjct: 493 WKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIM-YIVG 551
Query: 454 CTPEILT---PYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHF-QKYYDAVMP 509
P L +L +V+KL + VQ+ A +A + HF Q VMP
Sbjct: 552 QYPRFLRAHWKFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMP 611
Query: 510 FLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSL--------- 560
F+ IL N + + VG +G + + ++E M L
Sbjct: 612 FIDEILNNINTIICDLQPQQVHTFYEAVGYMIGAQTDQTVQEHLIEKYMLLPNQVWDSII 671
Query: 561 QGSQMETD---DPTT----SYMLQAWARLCKCLGQDFL 591
Q + D DP T +L+ R CK +G F+
Sbjct: 672 QQATKNVDILKDPETVKQLGSILKTNVRACKAVGHPFV 709
>pdb|1GCJ|A Chain A, N-Terminal Fragment Of Importin-Beta
pdb|1GCJ|B Chain B, N-Terminal Fragment Of Importin-Beta
Length = 460
Score = 36.6 bits (83), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 66/147 (44%), Gaps = 13/147 (8%)
Query: 19 PDSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQRSPHPE----AR 74
PD A LI+ L T + R E E ++ ++L L L + +P AR
Sbjct: 1 PDYASGXELITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVAR 60
Query: 75 AMAAVLLRKLLTRDDSFL-------WPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDT 127
A + ++ LT D + W + + + +K+ +LQ++ E+ + S C
Sbjct: 61 VAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTETYRPSSASQC-- 118
Query: 128 VSELASNILPENGWPELLPFMFQCVSS 154
V+ +A +P + WPEL+P + V++
Sbjct: 119 VAGIACAEIPVSQWPELIPQLVANVTN 145
>pdb|2BPT|A Chain A, Structure Of The Nup1p:kap95p Complex
pdb|2BKU|B Chain B, Kap95p:rangtp Complex
pdb|2BKU|D Chain D, Kap95p:rangtp Complex
pdb|3EA5|B Chain B, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
pdb|3EA5|D Chain D, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
Length = 861
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 31/157 (19%), Positives = 73/157 (46%), Gaps = 7/157 (4%)
Query: 455 TPEILTPYLDGIVSKLLVLLQNGKQ-MVQEGALTALASVADSSQEHFQKYYDAVMPFLKA 513
+P + P D ++ LL+ +++ A++++A S + F+KY + P+L
Sbjct: 587 SPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYL-- 644
Query: 514 ILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTS 573
+ A ++ + + ++ I+ + ++ +D FR + +M VL + S
Sbjct: 645 --LKALNQVDSPVSITAVGFIADISNSLEED-FRRYSDAMMNVLAQMI-SNPNARRELKP 700
Query: 574 YMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPD 610
+L + + +G DF+PY++ +M + + KP+
Sbjct: 701 AVLSVFGDIASNIGADFIPYLNDIMALCVAAQNTKPE 737
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 84/394 (21%), Positives = 161/394 (40%), Gaps = 22/394 (5%)
Query: 240 LQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDP 299
L IA +S + + +EF T+ E + + PQ + + +S + D+ +
Sbjct: 270 LTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNL 329
Query: 300 L-WHSAETED-EDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWXXXX 357
L + + ED ED + + S G CL A G + + PV E + + A W
Sbjct: 330 LNLLTRQNEDPEDDDWNVSMSAG-ACLQLFAQNCGNHILEPVL-EFVEQNITADNWRNRE 387
Query: 358 XXXXXXXXXXEGCAKVM-VKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQ 416
+G KV + Q L +LN D +V+ IG+++ + +
Sbjct: 388 AAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESID 447
Query: 417 NQFH-PQVLPALAGAMDDFQNPRVQAHAASAVLNFSEN---CTPEILTPYLDGIVSKLLV 472
Q H P V+ A + D +P+V + + ++N E TP + + +V L+
Sbjct: 448 PQQHLPGVVQACLIGLQD--HPKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIG 505
Query: 473 LLQ--NGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAIL--VNATDKSNRMLR- 527
+ + + A +AL ++ + + + + ++ F+ L + D++ L
Sbjct: 506 AANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLED 565
Query: 528 AKSMECIS---LVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPT--TSYMLQAWARL 582
A+S++ + L +A K + V ++LM L +E D + A + L
Sbjct: 566 AQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISAL 625
Query: 583 CKCLGQDFLPYMSVVMPPLLQS-AQLKPDVTITS 615
LG+ F Y+ P LL++ Q+ V+IT+
Sbjct: 626 AASLGKGFEKYLETFSPYLLKALNQVDSPVSITA 659
Score = 33.1 bits (74), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 9/83 (10%)
Query: 881 KYYETYLPFLLEACNDENQDVRQAAVYGLGVCAEFGGSVVKPLVGEALSRLNV---VIRH 937
KY ET+ P+LL+A N + V AV G A+ S+ + + + +NV +I +
Sbjct: 635 KYLETFSPYLLKALNQVDSPVSITAV---GFIADISNSLEEDFRRYSDAMMNVLAQMISN 691
Query: 938 PNA---LQPENLMAYDNAVSALG 957
PNA L+P L + + S +G
Sbjct: 692 PNARRELKPAVLSVFGDIASNIG 714
>pdb|3ND2|A Chain A, Structure Of Yeast Importin-Beta (Kap95p)
Length = 861
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 31/157 (19%), Positives = 73/157 (46%), Gaps = 7/157 (4%)
Query: 455 TPEILTPYLDGIVSKLLVLLQNGKQ-MVQEGALTALASVADSSQEHFQKYYDAVMPFLKA 513
+P + P D ++ LL+ +++ A++++A S + F+KY + P+L
Sbjct: 587 SPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYL-- 644
Query: 514 ILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTS 573
+ A ++ + + ++ I+ + ++ +D FR + +M VL + S
Sbjct: 645 --LKALNQVDSPVSITAVGFIADISNSLEED-FRRYSDAMMNVLAQMI-SNPNARRELKP 700
Query: 574 YMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPD 610
+L + + +G DF+PY++ +M + + KP+
Sbjct: 701 AVLSVFGDIASNIGADFIPYLNDIMALCVAAQNTKPE 737
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 84/394 (21%), Positives = 161/394 (40%), Gaps = 22/394 (5%)
Query: 240 LQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDP 299
L IA +S + + +EF T+ E + + PQ + + +S + D+ +
Sbjct: 270 LTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNL 329
Query: 300 L-WHSAETED-EDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWXXXX 357
L + + ED ED + + S G CL A G + + PV E + + A W
Sbjct: 330 LNLLTRQNEDPEDDDWNVSMSAG-ACLQLFAQNCGNHILEPVL-EFVEQNITADNWRNRE 387
Query: 358 XXXXXXXXXXEGCAKVM-VKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQ 416
+G KV + Q L +LN D +V+ IG+++ + +
Sbjct: 388 AAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESID 447
Query: 417 NQFH-PQVLPALAGAMDDFQNPRVQAHAASAVLNFSEN---CTPEILTPYLDGIVSKLLV 472
Q H P V+ A + D +P+V + + ++N E TP + + +V L+
Sbjct: 448 PQQHLPGVVQACLIGLQD--HPKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIG 505
Query: 473 LLQ--NGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAIL--VNATDKSNRMLR- 527
+ + + A +AL ++ + + + + ++ F+ L + D++ L
Sbjct: 506 AANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLED 565
Query: 528 AKSMECIS---LVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPT--TSYMLQAWARL 582
A+S++ + L +A K + V ++LM L +E D + A + L
Sbjct: 566 AQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISAL 625
Query: 583 CKCLGQDFLPYMSVVMPPLLQS-AQLKPDVTITS 615
LG+ F Y+ P LL++ Q+ V+IT+
Sbjct: 626 AASLGKGFEKYLETFSPYLLKALNQVDSPVSITA 659
Score = 33.1 bits (74), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 9/83 (10%)
Query: 881 KYYETYLPFLLEACNDENQDVRQAAVYGLGVCAEFGGSVVKPLVGEALSRLNV---VIRH 937
KY ET+ P+LL+A N + V AV G A+ S+ + + + +NV +I +
Sbjct: 635 KYLETFSPYLLKALNQVDSPVSITAV---GFIADISNSLEEDFRRYSDAMMNVLAQMISN 691
Query: 938 PNA---LQPENLMAYDNAVSALG 957
PNA L+P L + + S +G
Sbjct: 692 PNARRELKPAVLSVFGDIASNIG 714
>pdb|1IBR|D Chain D, Complex Of Ran With Importin Beta
pdb|1IBR|B Chain B, Complex Of Ran With Importin Beta
Length = 462
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 44/89 (49%), Gaps = 9/89 (10%)
Query: 73 ARAMAAVLLRKLLTRDDSFL-------WPRLSLHTQSSLKSMLLQSIQLESAKSISKKLC 125
AR A + ++ LT D + W + + + +K+ +LQ++ E+ + S C
Sbjct: 53 ARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTETYRPSSASQC 112
Query: 126 DTVSELASNILPENGWPELLPFMFQCVSS 154
V+ +A +P N WPEL+P + V++
Sbjct: 113 --VAGIACAEIPVNQWPELIPQLVANVTN 139
>pdb|1M5N|S Chain S, Crystal Structure Of Heat Repeats (1-11) Of Importin B
Bound To The Non-Classical Nls(67-94) Of Pthrp
Length = 485
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 44/89 (49%), Gaps = 9/89 (10%)
Query: 73 ARAMAAVLLRKLLTRDDSFL-------WPRLSLHTQSSLKSMLLQSIQLESAKSISKKLC 125
AR A + ++ LT D + W + + + +K+ +LQ++ E+ + S C
Sbjct: 53 ARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTETYRPSSASQC 112
Query: 126 DTVSELASNILPENGWPELLPFMFQCVSS 154
V+ +A +P N WPEL+P + V++
Sbjct: 113 --VAGIACAEIPVNQWPELIPQLVANVTN 139
>pdb|1F59|A Chain A, Importin-Beta-Fxfg Nucleoporin Complex
pdb|1F59|B Chain B, Importin-Beta-Fxfg Nucleoporin Complex
pdb|1O6P|A Chain A, Importin Beta Bound To A Glfg Nucleoporin Peptide
pdb|1O6P|B Chain B, Importin Beta Bound To A Glfg Nucleoporin Peptide
pdb|1O6O|A Chain A, Importin Beta Aa1-442 Bound To Five Fxfg Repeats From
Yeast Nsp1p. Second Crystal Form
pdb|1O6O|B Chain B, Importin Beta Aa1-442 Bound To Five Fxfg Repeats From
Yeast Nsp1p. Second Crystal Form
pdb|1O6O|C Chain C, Importin Beta Aa1-442 Bound To Five Fxfg Repeats From
Yeast Nsp1p. Second Crystal Form
Length = 442
Score = 33.9 bits (76), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 43/89 (48%), Gaps = 9/89 (10%)
Query: 73 ARAMAAVLLRKLLTRDDSFL-------WPRLSLHTQSSLKSMLLQSIQLESAKSISKKLC 125
AR A + ++ LT D + W + + + +K+ +L ++ E+ + S C
Sbjct: 53 ARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLHTLGTETYRPSSASQC 112
Query: 126 DTVSELASNILPENGWPELLPFMFQCVSS 154
V+ +A +P N WPEL+P + V++
Sbjct: 113 --VAGIACAEIPVNQWPELIPQLVANVTN 139
>pdb|1QBK|B Chain B, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 890
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 44/108 (40%), Gaps = 3/108 (2%)
Query: 854 KDKTAEERRIAICIFDDVAEQCREAALKYYETYLPFLLEACNDENQDVRQAAVYGLGVCA 913
+DK E R+ + + D+ + C + + P L N E V A + +G +
Sbjct: 677 QDKXPEVRQSSFALLGDLTKACFQHVKPCIADFXPILGTNLNPEFISVCNNATWAIGEIS 736
Query: 914 EFGGSVVKPLVGEALSRLNVVIRHPNALQPENLMAYDN-AVSALGKIC 960
G +P + L +L +I PN P+ L+ + LG +C
Sbjct: 737 IQXGIEXQPYIPXVLHQLVEIINRPNT--PKTLLENTAITIGRLGYVC 782
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 113/521 (21%), Positives = 185/521 (35%), Gaps = 77/521 (14%)
Query: 71 PEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSE 130
P RA +L+ + ++ + WP L S L S + E A +K+C+ +E
Sbjct: 104 PLIRATVGILITTIASKGELQNWPDLLPKLCSLLDSEDYNTC--EGAFGALQKICEDSAE 161
Query: 131 LASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLIINFIQCLTSSADRDRFQDL 190
+ + + + +P Q S K++ A Q II+ Q L
Sbjct: 162 ILDSDVLDRPLNIXIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALX----------- 210
Query: 191 LPLMMRTLTESLNN--GNXXXXXXXXXXXXXXXGTEPRFLR--RQLVDVVGSMLQIAEAE 246
L + + TE+L G+ E R R ++V LQ +
Sbjct: 211 --LHIDSFTENLFALAGDEEPEVRKNVCRALVXLLEVRMDRLLPHXHNIVEYXLQ--RTQ 266
Query: 247 SLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRL-----FAILMSMLL--DIEDD- 298
+E A EF +TLAE ++R LP+ I L ++ + +LL D+E+D
Sbjct: 267 DQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGXKYSDIDIILLKGDVEEDE 326
Query: 299 ----------PLWHSAETEDEDAGES------------------SNYSVGQEC----LDR 326
P +H + T + E S++++ ++C LD
Sbjct: 327 TIPDSEQDIRPRFHRSRTVAQQHDEDGIEEEDDDDDEIDDDDTISDWNL-RKCSAAALDV 385
Query: 327 LAIALGGNTIVPVASEQLPAYLAAPEWXXXXXXXXXXXXXXEGCAKVMVKNLEQVLSMVL 386
LA + + ++P L L EW EGC + + L +++ ++
Sbjct: 386 LA-NVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCXQGXIPYLPELIPHLI 444
Query: 387 NSFRDPHPRVR----WAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAH 442
D VR W ++ PD P L +D N RVQ
Sbjct: 445 QCLSDKKALVRSITCW-TLSRYAHWVVSQPPD--TYLKPLXTELLKRILD--SNKRVQEA 499
Query: 443 AASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQK 502
A SA E E L PYL I+ L+ + A+ ++ADS H K
Sbjct: 500 ACSAFATLEEEACTE-LVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNK 558
Query: 503 --YYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAV 541
Y + P L D+ + +EC+S V A+
Sbjct: 559 PEYIQXLXPPLIQKWNXLKDEDKDLFPL--LECLSSVATAL 597
>pdb|2L1L|B Chain B, Nmr Solution Structure Of The Phi0 Pki Nes Peptide In
Complex With Crm1-Rangtp
Length = 127
Score = 31.2 bits (69), Expect = 3.4, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 462 YLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHF-QKYYDAVMPFLKAILVN 517
+L +V+KL + VQ+ A +A + HF Q VMPF+ IL N
Sbjct: 58 FLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNN 114
>pdb|4B8J|A Chain A, Rimp_alpha1a
Length = 528
Score = 30.8 bits (68), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 48/115 (41%), Gaps = 5/115 (4%)
Query: 392 PHPRVRWAAINAIGQLSTDLGPDLQNQ--FHPQVLPALAGAMDDFQNPRVQAHAASAVLN 449
P P V A+ +G + T G D Q Q Q LP L + ++ A + N
Sbjct: 298 PSPSVLIPALRTVGNIVT--GDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISN 355
Query: 450 FSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYY 504
+ +I GI+ L+ LLQ + +++ A A+++ A S H Q Y
Sbjct: 356 ITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISN-ATSGGSHDQIKY 409
>pdb|2YNS|A Chain A, Rimp_alpha_b54nls
pdb|2YNS|B Chain B, Rimp_alpha_b54nls
pdb|4B8O|A Chain A, Rimp_alpha_sv40tagnls
pdb|4B8P|A Chain A, Rimp_alpha_a89nls
pdb|4B8P|B Chain B, Rimp_alpha_a89nls
Length = 490
Score = 30.8 bits (68), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 48/115 (41%), Gaps = 5/115 (4%)
Query: 392 PHPRVRWAAINAIGQLSTDLGPDLQNQ--FHPQVLPALAGAMDDFQNPRVQAHAASAVLN 449
P P V A+ +G + T G D Q Q Q LP L + ++ A + N
Sbjct: 260 PSPSVLIPALRTVGNIVT--GDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISN 317
Query: 450 FSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYY 504
+ +I GI+ L+ LLQ + +++ A A+++ A S H Q Y
Sbjct: 318 ITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISN-ATSGGSHDQIKY 371
>pdb|2QZA|A Chain A, Crystal Structure Of Salmonella Effector Protein Sopa
pdb|2QZA|B Chain B, Crystal Structure Of Salmonella Effector Protein Sopa
Length = 618
Score = 30.0 bits (66), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 13/79 (16%)
Query: 442 HAASAVLNFSENCTPEILTPYLDGIVSKLL----VLLQNGKQMVQ--------EGALTAL 489
+++SA+ +E+ +P L Y + + K + + +Q + GA T
Sbjct: 532 YSSSAIFG-TEHDSPPALRGYAEALXQKAWELSPAIFPSSEQFTEWSDRFHGLHGAFTCT 590
Query: 490 ASVADSSQEHFQKYYDAVM 508
+ VADS Q H +KY+ +V+
Sbjct: 591 SVVADSXQRHARKYFPSVL 609
>pdb|2QYU|A Chain A, Crystal Structure Of Salmonella Effector Protein Sopa
Length = 627
Score = 29.6 bits (65), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 13/79 (16%)
Query: 442 HAASAVLNFSENCTPEILTPYLDGIVSKLL----VLLQNGKQMVQ--------EGALTAL 489
+++SA+ +E+ +P L Y + ++ K + + +Q + GA T
Sbjct: 541 YSSSAIFG-TEHDSPPALRGYAEALMQKAWELSPAIFPSSEQFTEWSDRFHGLHGAFTCT 599
Query: 490 ASVADSSQEHFQKYYDAVM 508
+ VADS Q H +KY+ +V+
Sbjct: 600 SVVADSMQRHARKYFPSVL 618
>pdb|3SY2|A Chain A, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
pdb|3SY2|B Chain B, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
Length = 621
Score = 29.6 bits (65), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 13/79 (16%)
Query: 442 HAASAVLNFSENCTPEILTPYLDGIVSKLL----VLLQNGKQMVQ--------EGALTAL 489
+++SA+ +E+ +P L Y + ++ K + + +Q + GA T
Sbjct: 535 YSSSAIFG-TEHDSPPALRGYAEALMQKAWELSPAIFPSSEQFTEWSDRFHGLHGAFTCT 593
Query: 490 ASVADSSQEHFQKYYDAVM 508
+ VADS Q H +KY+ +V+
Sbjct: 594 SVVADSMQRHARKYFPSVL 612
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,905,076
Number of Sequences: 62578
Number of extensions: 943858
Number of successful extensions: 2407
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 43
Number of HSP's that attempted gapping in prelim test: 2310
Number of HSP's gapped (non-prelim): 125
length of query: 1076
length of database: 14,973,337
effective HSP length: 109
effective length of query: 967
effective length of database: 8,152,335
effective search space: 7883307945
effective search space used: 7883307945
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)