Query 001442
Match_columns 1076
No_of_seqs 355 out of 3164
Neff 10.6
Searched_HMMs 46136
Date Fri Mar 29 00:55:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001442.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001442hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2171 Karyopherin (importin) 100.0 7E-136 1E-140 1146.4 107.0 1033 19-1076 1-1074(1075)
2 KOG2023 Nuclear transport rece 100.0 1.3E-77 2.8E-82 628.1 55.2 790 22-1076 13-884 (885)
3 KOG1241 Karyopherin (importin) 100.0 1.2E-55 2.5E-60 472.2 62.8 728 23-842 2-822 (859)
4 COG5215 KAP95 Karyopherin (imp 100.0 3.6E-44 7.8E-49 370.2 65.6 738 19-878 1-814 (858)
5 KOG2171 Karyopherin (importin) 100.0 1.1E-36 2.4E-41 345.1 78.6 826 68-1029 15-983 (1075)
6 KOG1824 TATA-binding protein-i 100.0 2.9E-32 6.3E-37 298.1 70.4 929 22-1063 47-1203(1233)
7 KOG1991 Nuclear transport rece 100.0 2E-30 4.4E-35 288.1 65.9 651 19-698 1-794 (1010)
8 KOG2023 Nuclear transport rece 100.0 7.8E-33 1.7E-37 291.9 43.4 638 350-1027 59-797 (885)
9 KOG1241 Karyopherin (importin) 100.0 2.2E-28 4.9E-33 263.4 66.3 753 196-1054 5-816 (859)
10 KOG1824 TATA-binding protein-i 100.0 2.6E-27 5.6E-32 259.6 54.0 624 335-1065 43-700 (1233)
11 KOG1992 Nuclear export recepto 100.0 5.6E-26 1.2E-30 246.7 62.1 565 19-602 2-686 (960)
12 KOG1993 Nuclear transport rece 100.0 2.7E-25 6E-30 240.1 62.0 515 24-557 2-664 (978)
13 KOG2274 Predicted importin 9 [ 100.0 1.2E-24 2.5E-29 239.3 57.3 545 20-589 2-651 (1005)
14 KOG0213 Splicing factor 3b, su 100.0 2.5E-24 5.4E-29 230.0 55.0 751 152-1048 372-1141(1172)
15 COG5215 KAP95 Karyopherin (imp 99.9 1.8E-20 3.9E-25 195.5 64.8 660 316-1053 110-813 (858)
16 COG5181 HSH155 U2 snRNP splice 99.9 3.9E-21 8.4E-26 201.9 44.6 740 151-1063 176-927 (975)
17 COG5656 SXM1 Importin, protein 99.9 7E-18 1.5E-22 181.9 61.1 473 21-513 2-587 (970)
18 KOG2022 Nuclear transport rece 99.9 1.6E-15 3.4E-20 167.8 62.4 564 20-603 5-753 (982)
19 KOG0213 Splicing factor 3b, su 99.8 6E-16 1.3E-20 166.6 52.2 542 317-980 417-969 (1172)
20 KOG0915 Uncharacterized conser 99.8 1.1E-15 2.3E-20 178.0 51.1 657 193-965 818-1514(1702)
21 PLN03200 cellulose synthase-in 99.8 9.8E-15 2.1E-19 181.6 60.5 762 142-1061 57-871 (2102)
22 KOG0915 Uncharacterized conser 99.8 3.2E-15 6.9E-20 174.1 48.0 559 335-1026 814-1406(1702)
23 KOG2021 Nuclear mRNA export fa 99.8 5.9E-14 1.3E-18 152.2 53.3 568 22-605 3-747 (980)
24 PLN03200 cellulose synthase-in 99.8 3.4E-14 7.3E-19 176.9 57.4 673 190-1004 59-767 (2102)
25 COG5657 CSE1 CAS/CSE protein i 99.8 2.2E-14 4.8E-19 160.0 45.2 506 23-539 5-609 (947)
26 COG5101 CRM1 Importin beta-rel 99.8 9.7E-12 2.1E-16 132.4 61.9 465 19-498 11-652 (1053)
27 COG5181 HSH155 U2 snRNP splice 99.8 6.4E-15 1.4E-19 155.7 37.9 685 115-968 179-877 (975)
28 KOG1242 Protein containing ada 99.7 4.6E-14 1E-18 152.7 39.3 480 69-606 29-545 (569)
29 KOG1242 Protein containing ada 99.7 6.5E-14 1.4E-18 151.5 39.9 519 203-862 27-553 (569)
30 KOG1991 Nuclear transport rece 99.7 2.8E-09 6E-14 121.2 76.1 483 60-606 5-557 (1010)
31 KOG0212 Uncharacterized conser 99.6 3.1E-12 6.6E-17 135.1 36.9 516 316-1025 16-541 (675)
32 KOG0212 Uncharacterized conser 99.5 2.2E-11 4.8E-16 128.7 33.5 409 151-606 8-425 (675)
33 KOG1248 Uncharacterized conser 99.5 8.4E-08 1.8E-12 111.7 65.2 388 418-894 514-920 (1176)
34 KOG1248 Uncharacterized conser 99.5 7.3E-07 1.6E-11 104.1 69.9 782 192-1074 92-920 (1176)
35 KOG2081 Nuclear transport regu 99.5 1.3E-10 2.8E-15 124.4 33.7 429 40-497 2-539 (559)
36 KOG2274 Predicted importin 9 [ 99.5 5.3E-09 1.1E-13 117.4 47.0 609 383-1066 93-796 (1005)
37 PF01602 Adaptin_N: Adaptin N 99.5 5.2E-10 1.1E-14 132.5 42.4 474 339-996 42-519 (526)
38 PTZ00429 beta-adaptin; Provisi 99.5 6.9E-09 1.5E-13 121.4 50.0 443 23-538 69-545 (746)
39 PF01602 Adaptin_N: Adaptin N 99.4 2.3E-09 5E-14 127.0 41.9 477 22-587 7-486 (526)
40 PTZ00429 beta-adaptin; Provisi 99.4 2.2E-08 4.9E-13 117.2 48.1 471 334-954 64-539 (746)
41 KOG0166 Karyopherin (importin) 99.4 1.7E-10 3.6E-15 124.9 27.9 353 68-498 77-440 (514)
42 KOG1992 Nuclear export recepto 99.4 1.9E-06 4E-11 96.5 61.5 417 423-933 362-813 (960)
43 KOG0166 Karyopherin (importin) 99.4 1.9E-10 4.2E-15 124.4 27.8 360 145-541 68-438 (514)
44 KOG0211 Protein phosphatase 2A 99.3 2.4E-08 5.3E-13 115.3 35.9 486 35-584 172-664 (759)
45 KOG1943 Beta-tubulin folding c 99.2 9.1E-06 2E-10 94.1 53.0 453 98-586 336-839 (1133)
46 KOG1943 Beta-tubulin folding c 99.2 3.6E-05 7.8E-10 89.3 54.6 674 219-980 57-809 (1133)
47 KOG0211 Protein phosphatase 2A 99.1 2.3E-07 5.1E-12 107.3 36.6 529 115-759 131-664 (759)
48 PF10508 Proteasom_PSMB: Prote 99.1 2.5E-07 5.4E-12 106.2 37.0 392 61-496 43-464 (503)
49 PF08506 Cse1: Cse1; InterPro 99.1 2.9E-08 6.3E-13 107.3 26.3 255 184-447 73-370 (370)
50 KOG0392 SNF2 family DNA-depend 99.1 3.6E-05 7.8E-10 90.3 50.3 234 819-1064 750-994 (1549)
51 COG5064 SRP1 Karyopherin (impo 99.1 9.8E-09 2.1E-13 102.0 18.8 348 69-496 83-445 (526)
52 PRK09687 putative lyase; Provi 99.1 2.8E-08 6.1E-13 103.8 23.1 254 195-535 25-278 (280)
53 PF12755 Vac14_Fab1_bd: Vacuol 99.1 1.9E-09 4.2E-14 91.0 11.2 95 354-451 1-95 (97)
54 PF10508 Proteasom_PSMB: Prote 99.0 8.5E-07 1.9E-11 101.8 35.9 311 344-704 43-366 (503)
55 PRK13800 putative oxidoreducta 99.0 1.8E-07 3.8E-12 115.7 30.2 274 58-449 623-896 (897)
56 PRK09687 putative lyase; Provi 99.0 1.8E-07 3.9E-12 97.8 25.4 254 145-491 25-279 (280)
57 PRK13800 putative oxidoreducta 98.9 2E-07 4.3E-12 115.3 27.6 272 107-491 625-896 (897)
58 COG5064 SRP1 Karyopherin (impo 98.9 1.7E-08 3.8E-13 100.3 13.2 357 145-538 73-442 (526)
59 PF12460 MMS19_C: RNAPII trans 98.9 2.8E-06 6.1E-11 95.6 32.2 366 120-513 18-413 (415)
60 PF12348 CLASP_N: CLASP N term 98.9 1.4E-07 2.9E-12 97.5 19.4 189 342-542 10-209 (228)
61 KOG1060 Vesicle coat complex A 98.9 3.1E-05 6.8E-10 86.5 37.7 441 320-908 56-527 (968)
62 KOG0891 DNA-dependent protein 98.8 0.00019 4E-09 93.2 47.8 580 318-959 111-761 (2341)
63 KOG1062 Vesicle coat complex A 98.8 0.00018 3.8E-09 81.1 40.7 154 346-517 77-230 (866)
64 KOG1020 Sister chromatid cohes 98.8 0.0016 3.4E-08 78.8 58.8 131 397-542 794-924 (1692)
65 KOG1060 Vesicle coat complex A 98.7 1.4E-05 3.1E-10 89.1 28.9 406 24-499 73-538 (968)
66 KOG1062 Vesicle coat complex A 98.7 6.8E-05 1.5E-09 84.3 34.4 393 139-589 138-549 (866)
67 PF12460 MMS19_C: RNAPII trans 98.7 3.3E-05 7.1E-10 87.0 32.2 369 208-604 17-414 (415)
68 PF03810 IBN_N: Importin-beta 98.7 7.1E-08 1.5E-12 79.6 8.0 67 42-113 1-76 (77)
69 PF12348 CLASP_N: CLASP N term 98.7 6E-07 1.3E-11 92.7 16.2 187 313-506 20-218 (228)
70 PF03378 CAS_CSE1: CAS/CSE pro 98.7 2.3E-05 4.9E-10 87.0 29.0 358 665-1074 17-435 (435)
71 KOG2020 Nuclear transport rece 98.6 9.6E-05 2.1E-09 88.8 35.5 139 24-170 12-160 (1041)
72 KOG2021 Nuclear mRNA export fa 98.6 0.0026 5.6E-08 71.4 49.9 515 393-1005 206-768 (980)
73 KOG1059 Vesicle coat complex A 98.6 0.00037 8E-09 77.5 34.7 234 142-433 143-382 (877)
74 KOG2032 Uncharacterized conser 98.6 3.4E-05 7.4E-10 82.0 25.4 166 337-503 215-380 (533)
75 PF12755 Vac14_Fab1_bd: Vacuol 98.5 1.2E-06 2.6E-11 74.1 10.8 95 860-961 2-96 (97)
76 KOG1240 Protein kinase contain 98.5 1.7E-05 3.6E-10 92.7 23.3 291 117-455 436-728 (1431)
77 COG5240 SEC21 Vesicle coat com 98.5 0.0034 7.3E-08 68.1 39.6 184 335-541 260-444 (898)
78 KOG1020 Sister chromatid cohes 98.5 0.0091 2E-07 72.6 58.3 128 320-455 797-924 (1692)
79 cd00020 ARM Armadillo/beta-cat 98.4 1.4E-06 3.1E-11 79.6 10.4 112 340-452 8-120 (120)
80 KOG1240 Protein kinase contain 98.4 1.8E-05 3.9E-10 92.4 20.6 262 207-498 437-729 (1431)
81 PF13513 HEAT_EZ: HEAT-like re 98.4 6.4E-07 1.4E-11 67.9 5.8 55 353-407 1-55 (55)
82 KOG2022 Nuclear transport rece 98.3 0.014 3E-07 67.2 41.4 158 394-559 481-639 (982)
83 KOG1059 Vesicle coat complex A 98.3 0.0028 6.1E-08 70.8 33.6 179 67-265 154-365 (877)
84 KOG4224 Armadillo repeat prote 98.3 0.00011 2.3E-09 74.7 19.9 337 317-706 102-448 (550)
85 KOG4224 Armadillo repeat prote 98.3 7.7E-06 1.7E-10 82.7 11.7 356 143-541 85-448 (550)
86 KOG1061 Vesicle coat complex A 98.3 0.0014 3.1E-08 74.3 30.6 442 24-538 51-527 (734)
87 PF03378 CAS_CSE1: CAS/CSE pro 98.3 0.0031 6.8E-08 70.3 32.9 236 455-745 16-258 (435)
88 KOG1061 Vesicle coat complex A 98.2 0.0074 1.6E-07 68.7 34.6 144 340-498 50-193 (734)
89 KOG1820 Microtubule-associated 98.2 5.7E-05 1.2E-09 88.8 18.1 208 334-554 248-458 (815)
90 COG5240 SEC21 Vesicle coat com 98.2 0.001 2.2E-08 71.9 25.5 288 74-408 240-554 (898)
91 KOG4535 HEAT and armadillo rep 98.2 0.0033 7.1E-08 66.7 28.5 530 117-700 9-599 (728)
92 KOG0168 Putative ubiquitin fus 98.1 0.0055 1.2E-07 69.8 31.6 156 378-540 209-365 (1051)
93 KOG2956 CLIP-associating prote 98.1 0.00047 1E-08 73.1 20.7 203 340-556 288-494 (516)
94 COG5096 Vesicle coat complex, 98.1 0.051 1.1E-06 63.4 39.1 156 337-511 53-209 (757)
95 cd00020 ARM Armadillo/beta-cat 98.0 1.5E-05 3.2E-10 72.8 7.7 111 381-493 8-119 (120)
96 KOG2956 CLIP-associating prote 98.0 0.00078 1.7E-08 71.5 20.3 190 206-424 300-492 (516)
97 PF08389 Xpo1: Exportin 1-like 98.0 0.00019 4.1E-09 68.4 14.2 136 118-260 2-148 (148)
98 KOG4413 26S proteasome regulat 97.9 0.027 5.9E-07 57.0 28.8 341 122-494 61-439 (524)
99 KOG1058 Vesicle coat complex C 97.9 0.024 5.2E-07 64.0 31.1 146 334-491 52-198 (948)
100 PF13513 HEAT_EZ: HEAT-like re 97.9 1.6E-05 3.4E-10 60.2 5.0 55 858-912 1-55 (55)
101 KOG2259 Uncharacterized conser 97.9 0.032 7E-07 62.1 31.5 257 195-499 236-516 (823)
102 KOG2259 Uncharacterized conser 97.9 0.026 5.5E-07 62.9 30.7 246 248-542 210-514 (823)
103 KOG1077 Vesicle coat complex A 97.9 0.073 1.6E-06 59.8 41.3 139 346-497 81-219 (938)
104 COG5656 SXM1 Importin, protein 97.9 0.082 1.8E-06 59.9 67.9 208 864-1075 702-968 (970)
105 KOG4535 HEAT and armadillo rep 97.8 0.073 1.6E-06 57.0 31.4 148 349-496 6-181 (728)
106 PF13646 HEAT_2: HEAT repeats; 97.8 0.00011 2.4E-09 62.5 8.4 86 342-448 2-88 (88)
107 PF10274 ParcG: Parkin co-regu 97.8 0.00035 7.6E-09 65.9 12.0 126 420-546 36-171 (183)
108 KOG1967 DNA repair/transcripti 97.7 0.17 3.6E-06 59.1 58.9 237 646-916 787-1026(1030)
109 KOG2933 Uncharacterized conser 97.7 0.00073 1.6E-08 68.0 13.8 144 345-497 94-237 (334)
110 KOG4653 Uncharacterized conser 97.7 0.0035 7.5E-08 71.6 20.6 233 424-705 729-965 (982)
111 PF12717 Cnd1: non-SMC mitotic 97.7 0.0012 2.6E-08 64.4 15.3 108 352-468 1-108 (178)
112 PF08167 RIX1: rRNA processing 97.7 0.001 2.2E-08 63.7 14.1 138 376-515 21-164 (165)
113 KOG0414 Chromosome condensatio 97.7 0.28 6E-06 59.1 63.6 114 146-265 315-428 (1251)
114 KOG1078 Vesicle coat complex C 97.6 0.11 2.3E-06 59.5 30.2 288 141-494 243-532 (865)
115 KOG0946 ER-Golgi vesicle-tethe 97.6 0.24 5.1E-06 56.8 35.8 265 142-427 121-416 (970)
116 PF04826 Arm_2: Armadillo-like 97.5 0.0061 1.3E-07 62.5 17.9 191 340-543 13-209 (254)
117 KOG0891 DNA-dependent protein 97.5 0.27 5.9E-06 65.2 36.5 119 337-457 91-209 (2341)
118 PF12717 Cnd1: non-SMC mitotic 97.5 0.0025 5.4E-08 62.3 14.1 111 816-934 2-113 (178)
119 PF13646 HEAT_2: HEAT repeats; 97.5 0.00046 1E-08 58.6 7.8 86 382-490 1-88 (88)
120 KOG1410 Nuclear transport rece 97.5 0.31 6.6E-06 54.7 46.3 143 21-170 4-155 (1082)
121 PF05004 IFRD: Interferon-rela 97.4 0.051 1.1E-06 58.0 23.8 189 837-1027 80-283 (309)
122 KOG1993 Nuclear transport rece 97.4 0.43 9.3E-06 54.9 47.9 244 650-937 461-710 (978)
123 PF13251 DUF4042: Domain of un 97.4 0.0016 3.4E-08 62.4 11.0 143 354-496 1-176 (182)
124 PF02985 HEAT: HEAT repeat; I 97.4 0.00026 5.6E-09 45.7 3.7 30 886-915 1-30 (31)
125 KOG0168 Putative ubiquitin fus 97.3 0.16 3.5E-06 58.6 27.3 154 339-497 211-367 (1051)
126 KOG0414 Chromosome condensatio 97.3 0.69 1.5E-05 55.9 58.4 132 319-455 294-431 (1251)
127 KOG2032 Uncharacterized conser 97.3 0.37 8E-06 52.4 32.4 139 450-594 241-381 (533)
128 PF05004 IFRD: Interferon-rela 97.3 0.051 1.1E-06 58.1 22.2 197 386-586 49-259 (309)
129 PF08506 Cse1: Cse1; InterPro 97.3 0.27 5.8E-06 53.9 28.0 131 353-489 225-370 (370)
130 PF11865 DUF3385: Domain of un 97.3 0.0027 5.9E-08 60.1 11.2 147 336-496 7-159 (160)
131 PF02985 HEAT: HEAT repeat; I 97.2 0.00042 9.1E-09 44.7 3.6 30 381-410 1-30 (31)
132 KOG1822 Uncharacterized conser 97.2 1.2 2.7E-05 56.6 41.6 133 382-517 878-1011(2067)
133 KOG4653 Uncharacterized conser 97.2 0.042 9E-07 63.3 21.2 188 348-548 736-926 (982)
134 KOG1967 DNA repair/transcripti 97.2 0.79 1.7E-05 53.8 62.4 138 882-1029 864-1007(1030)
135 KOG1820 Microtubule-associated 97.2 0.015 3.3E-07 69.0 18.4 160 340-507 296-457 (815)
136 PF05804 KAP: Kinesin-associat 97.2 0.19 4.2E-06 59.3 26.9 308 143-497 331-652 (708)
137 PF11864 DUF3384: Domain of un 97.2 0.73 1.6E-05 52.9 33.4 340 648-1027 5-354 (464)
138 KOG1078 Vesicle coat complex C 97.2 0.76 1.6E-05 53.0 37.8 198 336-558 242-439 (865)
139 PF14500 MMS19_N: Dos2-interac 97.1 0.087 1.9E-06 54.6 21.2 225 315-558 14-256 (262)
140 PF10274 ParcG: Parkin co-regu 97.1 0.0078 1.7E-07 57.0 11.6 123 842-965 37-168 (183)
141 PF10521 DUF2454: Protein of u 97.0 0.02 4.4E-07 60.5 16.1 167 351-518 87-277 (282)
142 PF05918 API5: Apoptosis inhib 97.0 0.076 1.6E-06 60.1 20.4 272 116-433 34-317 (556)
143 PF05804 KAP: Kinesin-associat 97.0 1.3 2.9E-05 52.5 37.5 339 193-583 290-648 (708)
144 KOG1077 Vesicle coat complex A 97.0 1 2.2E-05 51.2 35.4 403 22-470 11-450 (938)
145 PLN03076 ARF guanine nucleotid 97.0 0.4 8.6E-06 62.7 29.1 293 115-433 1148-1513(1780)
146 COG5116 RPN2 26S proteasome re 96.9 0.0077 1.7E-07 65.3 11.5 153 343-517 520-673 (926)
147 KOG2160 Armadillo/beta-catenin 96.9 0.055 1.2E-06 56.6 17.3 146 350-498 94-244 (342)
148 PF14500 MMS19_N: Dos2-interac 96.9 0.32 6.9E-06 50.5 23.1 243 147-428 3-256 (262)
149 KOG2062 26S proteasome regulat 96.9 0.017 3.7E-07 65.0 13.8 156 341-517 521-676 (929)
150 PF04826 Arm_2: Armadillo-like 96.9 0.027 5.8E-07 57.9 14.5 193 382-589 14-210 (254)
151 PF08167 RIX1: rRNA processing 96.8 0.046 1E-06 52.4 15.1 136 335-474 21-164 (165)
152 KOG1058 Vesicle coat complex C 96.8 1.4 3.1E-05 50.5 33.6 96 351-455 371-466 (948)
153 PF08623 TIP120: TATA-binding 96.8 0.0069 1.5E-07 56.8 8.7 137 920-1062 3-165 (169)
154 KOG4524 Uncharacterized conser 96.8 1.9 4.1E-05 51.2 53.2 89 847-936 807-899 (1014)
155 KOG1517 Guanine nucleotide bin 96.8 0.11 2.4E-06 61.2 19.6 146 352-498 570-736 (1387)
156 PF08064 UME: UME (NUC010) dom 96.7 0.019 4.2E-07 50.1 10.8 98 459-562 5-106 (107)
157 KOG4413 26S proteasome regulat 96.7 0.34 7.3E-06 49.4 20.5 219 319-546 62-290 (524)
158 PF12719 Cnd3: Nuclear condens 96.7 0.075 1.6E-06 57.0 17.6 149 378-539 24-181 (298)
159 COG1413 FOG: HEAT repeat [Ener 96.7 0.7 1.5E-05 50.9 25.4 263 142-494 42-304 (335)
160 COG5096 Vesicle coat complex, 96.7 2.1 4.7E-05 50.5 37.7 133 23-170 56-193 (757)
161 PF05918 API5: Apoptosis inhib 96.7 0.19 4.2E-06 57.0 20.6 274 317-605 39-319 (556)
162 COG1413 FOG: HEAT repeat [Ener 96.7 0.73 1.6E-05 50.7 25.4 250 106-453 46-305 (335)
163 PF12719 Cnd3: Nuclear condens 96.6 0.16 3.4E-06 54.6 19.0 130 336-474 23-161 (298)
164 KOG0413 Uncharacterized conser 96.6 2.4 5.2E-05 50.0 36.3 105 106-220 579-683 (1529)
165 KOG2759 Vacuolar H+-ATPase V1 96.6 1.4 3E-05 47.3 25.1 320 56-409 65-438 (442)
166 smart00802 UME Domain in UVSB 96.6 0.028 6.1E-07 48.6 10.3 97 459-561 5-105 (107)
167 PLN03076 ARF guanine nucleotid 96.6 2.9 6.3E-05 55.1 32.5 254 349-605 1193-1511(1780)
168 PF11864 DUF3384: Domain of un 96.6 2.2 4.7E-05 49.1 33.9 195 206-428 147-350 (464)
169 KOG1525 Sister chromatid cohes 96.5 3.8 8.3E-05 51.7 34.2 130 321-453 243-406 (1266)
170 KOG1243 Protein kinase [Genera 96.5 0.051 1.1E-06 61.6 14.6 193 279-497 326-518 (690)
171 KOG4524 Uncharacterized conser 96.3 3.8 8.2E-05 48.9 42.8 69 344-412 283-351 (1014)
172 KOG0413 Uncharacterized conser 96.3 1.9 4.2E-05 50.8 25.2 145 353-513 945-1090(1529)
173 KOG1837 Uncharacterized conser 96.3 3.4 7.4E-05 51.9 28.7 100 818-922 1520-1619(1621)
174 PF08064 UME: UME (NUC010) dom 96.2 0.042 9.1E-07 48.0 9.7 99 373-475 4-106 (107)
175 cd00256 VATPase_H VATPase_H, r 96.2 2.9 6.3E-05 46.5 26.1 305 62-409 107-425 (429)
176 TIGR02270 conserved hypothetic 96.2 1.4 3E-05 49.1 23.4 241 105-452 56-296 (410)
177 smart00802 UME Domain in UVSB 96.1 0.045 9.8E-07 47.3 9.2 99 372-474 3-105 (107)
178 PF12054 DUF3535: Domain of un 96.0 0.86 1.9E-05 51.4 21.4 118 727-845 310-438 (441)
179 cd00256 VATPase_H VATPase_H, r 96.0 3.3 7.2E-05 46.0 26.5 72 421-493 352-424 (429)
180 KOG0889 Histone acetyltransfer 96.0 11 0.00024 51.9 49.4 299 380-703 984-1305(3550)
181 PF13251 DUF4042: Domain of un 96.0 0.17 3.7E-06 48.6 13.3 133 650-783 3-156 (182)
182 KOG2149 Uncharacterized conser 95.9 0.17 3.8E-06 53.7 14.1 132 382-515 60-191 (393)
183 PF04510 DUF577: Family of unk 95.9 0.2 4.4E-06 46.6 12.5 50 103-152 3-55 (174)
184 PF08767 CRM1_C: CRM1 C termin 95.9 1.9 4E-05 46.6 22.2 136 822-962 92-245 (319)
185 TIGR02270 conserved hypothetic 95.8 0.12 2.6E-06 57.3 13.1 119 341-493 88-206 (410)
186 KOG1293 Proteins containing ar 95.8 3.5 7.6E-05 46.9 23.9 106 349-455 429-536 (678)
187 PF04118 Dopey_N: Dopey, N-ter 95.7 3.3 7.1E-05 43.9 22.5 216 204-491 22-251 (307)
188 KOG1293 Proteins containing ar 95.6 5.5 0.00012 45.4 30.5 147 350-498 388-537 (678)
189 PF13001 Ecm29: Proteasome sta 95.6 6.3 0.00014 45.7 29.4 82 25-114 26-113 (501)
190 KOG1851 Uncharacterized conser 95.6 8 0.00017 48.8 27.6 171 318-494 1505-1678(1710)
191 KOG2933 Uncharacterized conser 95.5 0.25 5.5E-06 50.4 12.9 137 815-964 101-237 (334)
192 KOG4500 Rho/Rac GTPase guanine 95.5 4.6 9.9E-05 43.4 23.1 137 338-478 314-458 (604)
193 PF12231 Rif1_N: Rap1-interact 95.4 5.6 0.00012 44.2 36.8 321 353-758 7-351 (372)
194 PF01603 B56: Protein phosphat 95.3 3.3 7.1E-05 46.5 22.6 215 318-539 108-370 (409)
195 KOG0392 SNF2 family DNA-depend 95.3 0.18 3.9E-06 60.8 12.6 172 317-497 750-928 (1549)
196 KOG2025 Chromosome condensatio 95.2 7.9 0.00017 44.6 36.6 108 335-447 81-188 (892)
197 KOG2025 Chromosome condensatio 95.1 0.22 4.7E-06 56.4 12.1 108 377-491 82-190 (892)
198 PF10521 DUF2454: Protein of u 95.0 0.74 1.6E-05 48.8 15.5 159 399-562 99-275 (282)
199 COG5095 TAF6 Transcription ini 94.9 1.2 2.6E-05 45.0 15.3 150 375-540 196-360 (450)
200 PF08767 CRM1_C: CRM1 C termin 94.9 3.9 8.5E-05 44.2 20.8 100 352-451 133-243 (319)
201 COG5095 TAF6 Transcription ini 94.7 2.5 5.5E-05 42.8 16.9 152 732-917 200-362 (450)
202 KOG2137 Protein kinase [Signal 94.7 0.87 1.9E-05 52.4 15.4 127 378-513 347-475 (700)
203 PF11865 DUF3385: Domain of un 94.7 0.34 7.3E-06 46.1 10.7 146 378-538 8-156 (160)
204 COG5116 RPN2 26S proteasome re 94.6 0.25 5.5E-06 54.2 10.5 115 347-478 560-675 (926)
205 KOG2160 Armadillo/beta-catenin 94.4 0.65 1.4E-05 48.9 12.8 108 854-966 93-201 (342)
206 PF01603 B56: Protein phosphat 94.3 2.5 5.3E-05 47.5 18.3 231 19-265 130-370 (409)
207 KOG0567 HEAT repeat-containing 94.3 4.1 8.8E-05 41.0 17.1 89 341-451 38-128 (289)
208 KOG2137 Protein kinase [Signal 94.2 2.1 4.5E-05 49.4 16.9 133 377-516 386-518 (700)
209 KOG1243 Protein kinase [Genera 93.9 4.8 0.0001 46.4 19.0 188 335-537 326-513 (690)
210 PF10363 DUF2435: Protein of u 93.9 0.58 1.3E-05 39.4 9.2 84 423-516 4-87 (92)
211 PF12231 Rif1_N: Rap1-interact 93.9 13 0.00028 41.3 31.5 267 228-517 33-329 (372)
212 PF13001 Ecm29: Proteasome sta 93.7 2.5 5.4E-05 49.0 17.3 176 316-498 253-447 (501)
213 KOG2549 Transcription initiati 93.7 5.6 0.00012 44.4 18.4 147 376-539 207-370 (576)
214 KOG2149 Uncharacterized conser 93.6 1.1 2.3E-05 48.1 12.6 128 345-474 64-191 (393)
215 PF10363 DUF2435: Protein of u 93.6 0.61 1.3E-05 39.2 8.9 83 886-980 4-86 (92)
216 KOG1949 Uncharacterized conser 93.5 0.97 2.1E-05 51.3 12.6 150 342-494 177-331 (1005)
217 cd08050 TAF6 TATA Binding Prot 93.3 0.81 1.8E-05 49.8 11.7 129 374-517 176-320 (343)
218 cd08050 TAF6 TATA Binding Prot 93.3 0.69 1.5E-05 50.3 11.1 128 322-450 197-338 (343)
219 PF05536 Neurochondrin: Neuroc 93.2 21 0.00046 41.7 32.5 185 479-711 71-268 (543)
220 KOG2122 Beta-catenin-binding p 93.1 32 0.00069 43.6 24.9 74 884-964 529-604 (2195)
221 PF08623 TIP120: TATA-binding 93.1 0.32 7E-06 45.9 7.1 105 857-964 40-150 (169)
222 KOG0889 Histone acetyltransfer 93.1 52 0.0011 45.9 48.2 92 142-244 48-148 (3550)
223 KOG2062 26S proteasome regulat 92.8 23 0.00051 41.2 40.6 124 816-957 569-692 (929)
224 KOG1949 Uncharacterized conser 92.7 1.3 2.9E-05 50.2 12.1 135 31-170 183-329 (1005)
225 COG5218 YCG1 Chromosome conden 92.6 1.2 2.6E-05 49.5 11.4 107 376-489 87-194 (885)
226 KOG1048 Neural adherens juncti 92.4 8.3 0.00018 45.2 18.4 106 346-453 240-350 (717)
227 PF00790 VHS: VHS domain; Int 92.4 3 6.5E-05 38.7 12.7 95 462-556 39-135 (140)
228 KOG1517 Guanine nucleotide bin 92.3 2.9 6.3E-05 50.0 14.7 161 340-500 513-677 (1387)
229 PF05536 Neurochondrin: Neuroc 92.2 29 0.00062 40.7 38.7 238 340-589 6-266 (543)
230 KOG1048 Neural adherens juncti 92.0 30 0.00065 40.8 22.2 110 383-495 236-350 (717)
231 smart00638 LPD_N Lipoprotein N 92.0 9.4 0.0002 45.6 19.6 154 320-490 376-541 (574)
232 KOG2549 Transcription initiati 91.9 5 0.00011 44.8 15.2 113 362-475 270-393 (576)
233 PF12054 DUF3535: Domain of un 91.0 33 0.00071 39.0 22.4 79 352-433 100-179 (441)
234 KOG3961 Uncharacterized conser 91.0 0.93 2E-05 43.4 7.4 93 420-514 112-207 (262)
235 KOG0803 Predicted E3 ubiquitin 90.8 22 0.00049 45.4 21.0 281 146-475 44-330 (1312)
236 KOG2122 Beta-catenin-binding p 90.5 43 0.00093 42.5 21.9 73 380-453 530-602 (2195)
237 PF00514 Arm: Armadillo/beta-c 90.3 0.46 1E-05 32.9 3.8 30 885-914 12-41 (41)
238 PF03224 V-ATPase_H_N: V-ATPas 90.0 7.9 0.00017 41.9 15.0 189 848-1044 110-309 (312)
239 PF08389 Xpo1: Exportin 1-like 89.7 3.5 7.6E-05 38.7 10.8 119 322-447 10-148 (148)
240 PF04118 Dopey_N: Dopey, N-ter 89.7 9.7 0.00021 40.5 14.6 149 349-499 21-172 (307)
241 PF01347 Vitellogenin_N: Lipop 89.6 52 0.0011 39.8 23.2 126 334-487 485-615 (618)
242 cd03561 VHS VHS domain family; 89.3 5.2 0.00011 36.7 11.0 78 379-456 36-116 (133)
243 PF08161 NUC173: NUC173 domain 89.3 5.9 0.00013 39.1 11.9 118 472-603 7-124 (198)
244 KOG0567 HEAT repeat-containing 89.2 27 0.00059 35.4 22.8 113 353-497 170-283 (289)
245 smart00638 LPD_N Lipoprotein N 89.2 56 0.0012 39.1 23.6 99 336-449 443-542 (574)
246 PF12333 Ipi1_N: Rix1 complex 88.5 3.5 7.5E-05 35.7 8.7 62 372-433 3-64 (102)
247 PF00514 Arm: Armadillo/beta-c 88.5 0.87 1.9E-05 31.5 4.1 29 380-408 12-40 (41)
248 KOG1877 Putative transmembrane 88.4 42 0.00092 40.2 19.6 97 651-759 74-174 (819)
249 PF14664 RICTOR_N: Rapamycin-i 87.9 37 0.00079 37.6 18.1 229 139-410 21-270 (371)
250 PF11698 V-ATPase_H_C: V-ATPas 87.8 2.1 4.6E-05 37.6 6.8 69 102-171 42-114 (119)
251 cd03568 VHS_STAM VHS domain fa 87.5 6.4 0.00014 36.6 10.3 94 317-413 18-114 (144)
252 cd03568 VHS_STAM VHS domain fa 87.3 15 0.00032 34.1 12.6 92 463-557 35-128 (144)
253 KOG1848 Uncharacterized conser 87.3 37 0.0008 42.8 18.6 55 882-936 994-1050(1610)
254 cd03569 VHS_Hrs_Vps27p VHS dom 87.2 10 0.00022 35.2 11.4 78 379-456 40-118 (142)
255 KOG3036 Protein involved in ce 87.1 35 0.00076 34.2 17.0 209 1-223 1-248 (293)
256 PF03224 V-ATPase_H_N: V-ATPas 87.0 19 0.00042 38.9 15.5 138 316-457 121-274 (312)
257 smart00288 VHS Domain present 86.9 17 0.00038 33.3 12.7 79 463-543 35-115 (133)
258 PF01347 Vitellogenin_N: Lipop 86.5 40 0.00086 40.8 19.6 124 116-262 447-586 (618)
259 KOG3036 Protein involved in ce 86.5 17 0.00036 36.4 12.6 71 844-914 125-197 (293)
260 PF12783 Sec7_N: Guanine nucle 86.4 27 0.00058 33.7 14.6 109 157-265 36-146 (168)
261 KOG1222 Kinesin associated pro 86.2 59 0.0013 35.9 23.2 92 357-450 281-372 (791)
262 KOG2081 Nuclear transport regu 85.2 74 0.0016 36.2 39.8 133 816-966 366-500 (559)
263 cd03569 VHS_Hrs_Vps27p VHS dom 84.8 23 0.00051 32.8 12.5 79 463-544 39-119 (142)
264 PF12530 DUF3730: Protein of u 84.7 51 0.0011 33.8 21.2 150 319-479 57-217 (234)
265 PF11698 V-ATPase_H_C: V-ATPas 84.7 3.8 8.3E-05 36.1 6.8 69 381-452 44-115 (119)
266 PF00790 VHS: VHS domain; Int 84.3 11 0.00024 35.0 10.3 78 379-456 41-122 (140)
267 cd03567 VHS_GGA VHS domain fam 84.1 25 0.00055 32.4 12.3 95 815-918 18-120 (139)
268 PF12765 Cohesin_HEAT: HEAT re 84.0 1.5 3.2E-05 30.5 3.3 40 362-403 2-41 (42)
269 PF11919 DUF3437: Domain of un 84.0 1.8 3.8E-05 36.2 4.3 61 354-415 4-64 (90)
270 smart00288 VHS Domain present 83.9 15 0.00032 33.8 10.8 78 379-456 36-115 (133)
271 cd03561 VHS VHS domain family; 83.8 22 0.00048 32.6 12.0 80 463-543 35-116 (133)
272 cd03565 VHS_Tom1 VHS domain fa 83.6 17 0.00036 33.7 11.0 95 815-917 18-118 (141)
273 PF04078 Rcd1: Cell differenti 83.5 7.1 0.00015 39.7 9.1 136 820-963 68-220 (262)
274 PF08569 Mo25: Mo25-like; Int 83.4 72 0.0016 34.6 19.4 184 197-410 80-284 (335)
275 COG5218 YCG1 Chromosome conden 83.3 89 0.0019 35.6 40.5 105 335-444 87-191 (885)
276 PF08146 BP28CT: BP28CT (NUC21 83.3 38 0.00083 31.9 13.5 76 821-896 40-119 (153)
277 PF09324 DUF1981: Domain of un 82.9 5 0.00011 33.4 6.6 70 100-169 14-85 (86)
278 PF12333 Ipi1_N: Rix1 complex 82.8 10 0.00022 32.9 8.7 62 877-938 3-65 (102)
279 cd03567 VHS_GGA VHS domain fam 82.5 23 0.0005 32.6 11.3 76 380-455 38-119 (139)
280 KOG4500 Rho/Rac GTPase guanine 81.1 51 0.0011 36.0 14.5 115 380-497 315-434 (604)
281 PF12074 DUF3554: Domain of un 81.1 92 0.002 34.2 20.4 199 842-1053 21-239 (339)
282 COG5231 VMA13 Vacuolar H+-ATPa 80.6 79 0.0017 33.1 18.4 175 206-409 249-428 (432)
283 PF08569 Mo25: Mo25-like; Int 79.9 96 0.0021 33.7 23.6 75 191-267 207-285 (335)
284 PF12830 Nipped-B_C: Sister ch 79.7 48 0.0011 32.5 13.5 86 143-241 8-93 (187)
285 KOG2011 Sister chromatid cohes 79.4 1.4E+02 0.003 37.3 19.2 124 356-486 262-391 (1048)
286 PF04388 Hamartin: Hamartin pr 79.1 34 0.00073 41.2 14.3 79 858-936 82-162 (668)
287 KOG3961 Uncharacterized conser 79.0 4.7 0.0001 38.9 5.7 74 860-933 130-206 (262)
288 PF12830 Nipped-B_C: Sister ch 78.2 59 0.0013 31.9 13.6 65 23-88 9-76 (187)
289 PF12397 U3snoRNP10: U3 small 77.3 25 0.00054 31.6 9.9 73 335-410 2-75 (121)
290 KOG2199 Signal transducing ada 76.7 20 0.00044 38.3 9.9 109 340-456 13-122 (462)
291 PF08713 DNA_alkylation: DNA a 76.2 5.4 0.00012 40.4 6.0 70 338-413 119-188 (213)
292 PF06685 DUF1186: Protein of u 76.1 47 0.001 34.1 12.3 102 860-979 58-161 (249)
293 PF10441 Urb2: Urb2/Npa2 famil 75.8 97 0.0021 31.5 15.0 166 906-1075 9-212 (223)
294 PF12530 DUF3730: Protein of u 75.7 1E+02 0.0022 31.7 21.0 152 347-509 9-166 (234)
295 PF12074 DUF3554: Domain of un 75.3 1.3E+02 0.0029 32.9 18.9 175 334-516 56-254 (339)
296 PF09324 DUF1981: Domain of un 74.5 20 0.00043 29.9 7.7 57 854-910 28-84 (86)
297 PLN03205 ATR interacting prote 74.5 1.3E+02 0.0028 32.4 16.4 141 122-265 302-446 (652)
298 COG5657 CSE1 CAS/CSE protein i 74.2 2.1E+02 0.0047 34.8 43.5 78 946-1027 507-585 (947)
299 PF11701 UNC45-central: Myosin 73.9 19 0.00042 34.1 8.6 131 316-449 21-156 (157)
300 KOG2973 Uncharacterized conser 73.2 12 0.00026 38.7 7.2 106 382-493 5-110 (353)
301 KOG3678 SARM protein (with ste 72.9 31 0.00067 37.6 10.4 137 817-961 197-336 (832)
302 PF11919 DUF3437: Domain of un 72.4 11 0.00025 31.4 5.7 59 901-966 5-63 (90)
303 KOG1789 Endocytosis protein RM 72.2 2.5E+02 0.0055 34.8 23.8 139 72-222 1740-1883(2235)
304 PF04388 Hamartin: Hamartin pr 71.8 51 0.0011 39.8 13.3 76 819-894 85-161 (668)
305 COG4912 Predicted DNA alkylati 71.3 21 0.00047 35.1 8.1 84 323-412 102-186 (222)
306 cd00197 VHS_ENTH_ANTH VHS, ENT 71.2 66 0.0014 28.5 11.0 74 335-408 33-114 (115)
307 cd03572 ENTH_epsin_related ENT 71.2 66 0.0014 28.8 10.5 76 377-452 35-119 (122)
308 KOG0803 Predicted E3 ubiquitin 71.1 2.7E+02 0.0058 36.3 19.4 104 346-451 48-152 (1312)
309 cd03565 VHS_Tom1 VHS domain fa 70.6 59 0.0013 30.2 10.6 77 380-456 38-119 (141)
310 cd03572 ENTH_epsin_related ENT 70.2 37 0.0008 30.4 8.7 75 463-537 36-117 (122)
311 PF12726 SEN1_N: SEN1 N termin 69.8 2.8E+02 0.0061 34.3 34.1 121 379-500 119-249 (727)
312 KOG2759 Vacuolar H+-ATPase V1 69.7 1.8E+02 0.0039 32.0 20.1 72 421-494 365-438 (442)
313 KOG4199 Uncharacterized conser 69.3 1.6E+02 0.0035 31.3 27.3 307 348-703 116-443 (461)
314 PF14668 RICTOR_V: Rapamycin-i 68.8 14 0.00031 29.4 5.2 55 355-411 3-60 (73)
315 PF07571 DUF1546: Protein of u 68.0 12 0.00027 31.6 5.2 60 391-451 17-77 (92)
316 PF08146 BP28CT: BP28CT (NUC21 67.8 36 0.00078 32.1 8.8 82 525-606 36-118 (153)
317 cd00197 VHS_ENTH_ANTH VHS, ENT 67.7 70 0.0015 28.4 10.4 74 377-450 34-113 (115)
318 KOG0929 Guanine nucleotide exc 67.5 4E+02 0.0086 35.1 21.9 257 116-433 1049-1322(1514)
319 smart00185 ARM Armadillo/beta- 67.4 7.4 0.00016 26.5 3.2 28 381-408 13-40 (41)
320 PF05327 RRN3: RNA polymerase 66.8 2.1E+02 0.0047 33.9 17.0 138 861-1009 53-200 (563)
321 smart00185 ARM Armadillo/beta- 66.8 7.4 0.00016 26.6 3.1 28 886-913 13-40 (41)
322 PF05327 RRN3: RNA polymerase 66.7 2.7E+02 0.006 33.0 20.6 54 882-935 343-398 (563)
323 KOG2085 Serine/threonine prote 66.6 1.2E+02 0.0027 33.0 13.0 182 19-219 147-367 (457)
324 PF14668 RICTOR_V: Rapamycin-i 66.3 17 0.00036 29.0 5.2 55 397-454 4-60 (73)
325 cd06561 AlkD_like A new struct 65.8 23 0.0005 35.2 7.7 66 342-412 108-173 (197)
326 KOG1822 Uncharacterized conser 65.8 4.6E+02 0.0099 35.2 68.7 130 888-1028 879-1011(2067)
327 PF04510 DUF577: Family of unk 65.2 38 0.00082 32.1 8.0 37 483-519 60-97 (174)
328 PF14631 FancD2: Fanconi anaem 65.2 69 0.0015 42.2 13.3 139 371-516 426-564 (1426)
329 PF08713 DNA_alkylation: DNA a 64.2 1.5E+02 0.0034 29.6 13.6 143 338-504 50-194 (213)
330 PF07571 DUF1546: Protein of u 63.2 27 0.00058 29.5 6.3 57 856-912 18-76 (92)
331 PF14225 MOR2-PAG1_C: Cell mor 62.4 2E+02 0.0044 30.0 14.3 141 340-498 112-258 (262)
332 PF11935 DUF3453: Domain of un 62.4 1.9E+02 0.0042 29.7 17.1 130 152-292 2-162 (239)
333 KOG1851 Uncharacterized conser 61.5 5E+02 0.011 34.1 33.9 102 816-920 1583-1684(1710)
334 PF11701 UNC45-central: Myosin 60.0 34 0.00073 32.5 7.2 131 817-958 20-156 (157)
335 PF12783 Sec7_N: Guanine nucle 59.3 1E+02 0.0022 29.6 10.6 101 352-453 35-147 (168)
336 COG5369 Uncharacterized conser 58.7 33 0.00072 38.4 7.5 138 355-494 405-545 (743)
337 KOG2973 Uncharacterized conser 58.5 87 0.0019 32.8 9.9 104 344-452 8-111 (353)
338 cd00872 PI3Ka_I Phosphoinositi 57.6 1.2E+02 0.0026 29.2 10.3 32 117-153 84-115 (171)
339 COG5209 RCD1 Uncharacterized p 57.6 27 0.00058 34.3 5.8 56 858-913 160-217 (315)
340 PF14961 BROMI: Broad-minded p 57.2 1.6E+02 0.0034 37.2 13.3 136 106-245 164-316 (1296)
341 PF14838 INTS5_C: Integrator c 56.8 4.2E+02 0.0091 31.8 23.4 64 23-86 182-245 (696)
342 KOG2256 Predicted protein invo 55.1 4.1E+02 0.009 31.2 17.9 178 420-602 280-474 (661)
343 KOG1087 Cytosolic sorting prot 54.5 1.1E+02 0.0024 34.7 10.9 94 463-558 36-132 (470)
344 PF12397 U3snoRNP10: U3 small 54.4 1.6E+02 0.0035 26.3 11.6 74 376-454 2-76 (121)
345 KOG2199 Signal transducing ada 52.9 1.6E+02 0.0035 31.8 11.0 76 338-413 44-122 (462)
346 PF03542 Tuberin: Tuberin; In 52.4 3.3E+02 0.0071 29.9 13.8 146 341-494 143-303 (356)
347 PF07539 DRIM: Down-regulated 52.2 1.7E+02 0.0036 27.2 10.0 80 380-474 17-97 (141)
348 PF12612 TFCD_C: Tubulin foldi 51.8 1.5E+02 0.0033 29.2 10.6 111 377-494 4-116 (193)
349 PF12765 Cohesin_HEAT: HEAT re 51.5 28 0.0006 24.3 3.7 40 128-167 3-42 (42)
350 PF03130 HEAT_PBS: PBS lyase H 50.2 11 0.00025 23.1 1.5 14 396-409 1-14 (27)
351 PF10350 DUF2428: Putative dea 49.7 3.2E+02 0.007 28.4 13.8 59 230-292 185-249 (255)
352 PF08161 NUC173: NUC173 domain 49.7 2.7E+02 0.0059 27.6 14.4 57 359-415 20-76 (198)
353 PF04078 Rcd1: Cell differenti 49.2 3.2E+02 0.007 28.2 15.2 183 28-223 3-219 (262)
354 cd07064 AlkD_like_1 A new stru 48.7 88 0.0019 31.4 8.4 66 340-411 116-181 (208)
355 COG5369 Uncharacterized conser 48.5 2.7E+02 0.0058 31.8 12.2 114 380-494 473-594 (743)
356 KOG4199 Uncharacterized conser 48.1 3.7E+02 0.0081 28.7 26.0 285 202-513 116-422 (461)
357 cd00864 PI3Ka Phosphoinositide 47.8 2.2E+02 0.0048 26.8 10.3 81 20-116 37-118 (152)
358 cd03562 CID CID (CTD-Interacti 46.5 1.3E+02 0.0028 26.5 8.4 83 392-485 17-99 (114)
359 KOG0946 ER-Golgi vesicle-tethe 46.4 6.1E+02 0.013 30.7 42.3 238 23-265 23-292 (970)
360 cd03562 CID CID (CTD-Interacti 45.3 1.4E+02 0.003 26.4 8.4 65 844-909 38-103 (114)
361 smart00567 EZ_HEAT E-Z type HE 45.0 29 0.00063 21.8 2.8 15 353-367 1-15 (30)
362 cd00870 PI3Ka_III Phosphoinosi 44.2 2.6E+02 0.0056 26.8 10.2 81 20-116 44-125 (166)
363 PF12726 SEN1_N: SEN1 N termin 43.6 7.2E+02 0.016 30.7 31.7 67 103-170 77-147 (727)
364 PF12243 CTK3: CTD kinase subu 42.9 1E+02 0.0022 28.4 6.9 74 384-468 12-87 (139)
365 KOG2256 Predicted protein invo 42.5 6.4E+02 0.014 29.8 18.1 179 378-559 280-475 (661)
366 PF03542 Tuberin: Tuberin; In 42.5 5E+02 0.011 28.5 18.7 77 859-938 212-288 (356)
367 cd06561 AlkD_like A new struct 41.9 1.4E+02 0.003 29.5 8.8 66 854-924 115-180 (197)
368 KOG1087 Cytosolic sorting prot 41.8 3.5E+02 0.0076 30.9 12.3 87 380-468 38-126 (470)
369 PF11841 DUF3361: Domain of un 41.2 1.8E+02 0.0039 27.5 8.4 98 398-498 35-135 (160)
370 PF10350 DUF2428: Putative dea 40.7 4.4E+02 0.0096 27.4 15.3 121 817-937 112-251 (255)
371 PF12612 TFCD_C: Tubulin foldi 39.5 3.9E+02 0.0084 26.4 15.8 153 100-266 4-159 (193)
372 PF14868 DUF4487: Domain of un 38.7 7.2E+02 0.016 29.3 23.1 284 55-371 246-555 (559)
373 PF11707 Npa1: Ribosome 60S bi 38.5 5.6E+02 0.012 27.9 19.6 78 189-266 52-144 (330)
374 KOG0929 Guanine nucleotide exc 38.4 1.1E+03 0.024 31.4 18.4 241 349-605 1047-1320(1514)
375 smart00145 PI3Ka Phosphoinosit 38.4 3.3E+02 0.0071 26.6 10.2 78 22-115 44-122 (184)
376 smart00582 RPR domain present 38.3 1.6E+02 0.0035 26.3 7.8 61 385-456 5-65 (121)
377 PF14631 FancD2: Fanconi anaem 37.4 7.6E+02 0.016 33.1 16.1 156 334-496 430-585 (1426)
378 KOG2059 Ras GTPase-activating 36.9 88 0.0019 36.6 6.7 74 318-391 360-433 (800)
379 PF14664 RICTOR_N: Rapamycin-i 36.8 6.3E+02 0.014 28.1 20.0 230 194-453 26-270 (371)
380 PF00613 PI3Ka: Phosphoinositi 36.7 1.7E+02 0.0036 28.7 8.0 80 20-115 43-123 (184)
381 PF14225 MOR2-PAG1_C: Cell mor 36.6 5.2E+02 0.011 27.0 18.5 196 381-606 30-238 (262)
382 PF14222 MOR2-PAG1_N: Cell mor 36.2 7.9E+02 0.017 29.0 24.7 161 57-228 130-308 (552)
383 PF14222 MOR2-PAG1_N: Cell mor 34.5 8.4E+02 0.018 28.8 22.0 149 897-1060 143-313 (552)
384 COG1698 Uncharacterized protei 34.2 1.4E+02 0.003 24.6 5.5 36 16-51 7-48 (93)
385 PF14228 MOR2-PAG1_mid: Cell m 34.2 1.2E+03 0.025 30.4 16.9 54 210-265 933-986 (1120)
386 KOG2085 Serine/threonine prote 31.8 7.5E+02 0.016 27.4 12.1 80 373-453 334-415 (457)
387 PF09759 Atx10homo_assoc: Spin 31.7 2.2E+02 0.0048 24.6 6.8 57 356-413 3-63 (102)
388 KOG1837 Uncharacterized conser 29.9 1.5E+03 0.032 30.2 38.8 218 821-1054 1368-1616(1621)
389 KOG2213 Apoptosis inhibitor 5/ 29.8 7.9E+02 0.017 27.1 22.1 53 647-704 38-90 (460)
390 KOG2213 Apoptosis inhibitor 5/ 29.0 8.1E+02 0.018 27.0 22.4 142 116-265 36-180 (460)
391 PF06371 Drf_GBD: Diaphanous G 29.0 3.3E+02 0.0071 26.5 9.0 60 391-451 127-186 (187)
392 PF01465 GRIP: GRIP domain; I 28.9 1.4E+02 0.003 21.4 4.3 35 99-134 3-37 (46)
393 PF04699 P16-Arc: ARP2/3 compl 28.4 2.6E+02 0.0057 26.2 7.3 59 1017-1075 51-110 (152)
394 cd00869 PI3Ka_II Phosphoinosit 28.1 5.5E+02 0.012 24.7 10.3 49 93-153 66-115 (169)
395 PF03392 OS-D: Insect pheromon 27.3 66 0.0014 27.3 3.0 50 1017-1067 39-89 (95)
396 PF14911 MMS22L_C: S-phase gen 27.1 8.9E+02 0.019 26.8 20.0 60 858-917 225-290 (373)
397 PF07539 DRIM: Down-regulated 25.9 3.7E+02 0.0079 25.0 7.8 28 102-130 16-43 (141)
398 PF06371 Drf_GBD: Diaphanous G 25.9 4.8E+02 0.01 25.3 9.6 58 856-913 128-186 (187)
399 COG5537 IRR1 Cohesin [Cell div 25.7 1.1E+03 0.025 27.6 15.9 115 375-493 269-385 (740)
400 PF03685 UPF0147: Uncharacteri 25.2 2.4E+02 0.0051 23.3 5.5 65 22-86 9-79 (85)
401 PF14676 FANCI_S2: FANCI solen 25.0 5.8E+02 0.012 24.2 9.1 118 76-218 37-157 (158)
402 KOG1877 Putative transmembrane 23.6 1.4E+03 0.031 28.1 24.3 80 208-289 71-150 (819)
403 PF06025 DUF913: Domain of Unk 23.6 3.7E+02 0.0081 29.9 8.8 148 816-965 74-236 (379)
404 KOG1848 Uncharacterized conser 23.6 1.8E+03 0.039 29.1 27.3 130 725-873 993-1132(1610)
405 PF06786 UPF0253: Uncharacteri 23.5 2.4E+02 0.0053 21.4 4.8 49 656-704 7-60 (66)
406 PF11841 DUF3361: Domain of un 23.2 6.5E+02 0.014 23.9 10.3 100 818-918 33-135 (160)
407 PHA02836 putative transmembran 23.2 1.3E+02 0.0027 26.8 3.9 36 862-897 105-141 (153)
408 KOG2011 Sister chromatid cohes 22.9 1.7E+03 0.036 28.5 19.8 127 316-450 303-433 (1048)
409 PF12243 CTK3: CTD kinase subu 22.6 6.2E+02 0.013 23.4 11.0 76 427-513 13-91 (139)
410 PF14961 BROMI: Broad-minded p 22.0 8.9E+02 0.019 31.1 11.9 84 383-470 164-249 (1296)
411 PRK04964 hypothetical protein; 21.8 2.7E+02 0.0059 21.1 4.7 51 654-704 5-60 (66)
412 smart00582 RPR domain present 21.6 5.7E+02 0.012 22.6 8.8 61 428-499 6-66 (121)
413 PF08822 DUF1804: Protein of u 21.1 7.3E+02 0.016 23.7 10.5 93 824-931 62-154 (165)
414 PF14676 FANCI_S2: FANCI solen 20.6 6.3E+02 0.014 24.0 8.4 83 821-909 74-156 (158)
415 PF08324 PUL: PUL domain; Int 20.2 5.1E+02 0.011 27.1 8.9 101 351-451 122-230 (268)
No 1
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.9e-136 Score=1146.41 Aligned_cols=1033 Identities=46% Similarity=0.770 Sum_probs=948.2
Q ss_pred CChHHHHHHHHHhcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHccCCCHHHHHHHHHHHHHhcccCCCCcccCCCH
Q 001442 19 PDSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSL 98 (1076)
Q Consensus 19 ~~~~~l~~lL~~~~s~d~~~r~~Ae~~L~~~~~~~p~~~~~~L~~il~~~~~~~~R~~a~v~Lk~~i~~~~~~~w~~l~~ 98 (1076)
|+.+.|.++++.+.||||++|++||+.|+....+.| .+..|.+++.++.++++||+|||++|+.+.+. |+.++.
T Consensus 1 ~~~~~l~qLl~~l~spDn~vr~~Ae~~l~~~~~~~~--~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~----w~~l~~ 74 (1075)
T KOG2171|consen 1 MDSAPLEQLLQQLLSPDNEVRRQAEEALETLAKTEP--LLPALAHILATSADPQVRQLAAVLLRKLLTKH----WSRLSA 74 (1075)
T ss_pred CchhHHHHHHHHhcCCCchHHHHHHHHHHHhhcccc--hHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH----hhcCCH
Confidence 466799999999999999999999999987555334 67999999999999999999999999999997 999999
Q ss_pred hHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhcccCCCCcchhHHHHHHhhcCCCHHHHHHHHHHHHHH--------
Q 001442 99 HTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQL-------- 170 (1076)
Q Consensus 99 ~~~~~lk~~Ll~~l~~~~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~~~~~~~r~~al~~L~~l-------- 170 (1076)
+.|+.||+.||..+.+|+.+.||+++|++|+.||+.+++. .||+++++|+++.+|+++..|+.|+.+|..+
T Consensus 75 e~~~siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e-~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~ 153 (1075)
T KOG2171|consen 75 EVQQSIKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPE-KWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTL 153 (1075)
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhcccc-chHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhcccc
Confidence 9999999999999999999999999999999999999995 9999999999999999999999999999888
Q ss_pred -----------------------------HHHHHHhhC-CcchHhHHhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Q 001442 171 -----------------------------IINFIQCLT-SSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIEL 220 (1076)
Q Consensus 171 -----------------------------~~~~~~~l~-~~~~~~~~~~l~p~~l~~l~~~~~~~~~~~~~~~~~~l~~l 220 (1076)
+.++...++ ++.....|..++|.++.++...++.+|.+....++++|.++
T Consensus 154 ~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El 233 (1075)
T KOG2171|consen 154 QPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIEL 233 (1075)
T ss_pred chhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHH
Confidence 122222331 34456788899999999999999999999999999999999
Q ss_pred HccCcHHHHHhHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHhhcccchhhccchhhHHHHHHHHHHhhcCCCCCcc
Q 001442 221 AGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPL 300 (1076)
Q Consensus 221 ~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~dd~~ 300 (1076)
++..|+++++|+..++++++.+..|++.++.+|..|++++.++++ ++|.+.++.+++...+++.++.+|.+.++|++
T Consensus 234 ~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e---~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~e 310 (1075)
T KOG2171|consen 234 LESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSE---YAPAMCKKLALLGHTLVPVLLAMMTEEEDDDE 310 (1075)
T ss_pred HhhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHH---hhHHHhhhchhhhccHHHHHHHhcCCcccchh
Confidence 999999999999999999999999999999999999999999999 49999999999999999999999999998999
Q ss_pred ccCCCCCCcccCCCCchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhcHHHHHHhHHH
Q 001442 301 WHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQ 380 (1076)
Q Consensus 301 ~~~~~~e~~d~~e~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~ 380 (1076)
|...|+.|+|+ +.+++..|.+++|+++.++|++.++|.+++++..+++|++|+.|+||+++|+.+++||.+.+.+++++
T Consensus 311 w~~~d~~ded~-~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~ 389 (1075)
T KOG2171|consen 311 WSNEDDLDEDD-EETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPK 389 (1075)
T ss_pred hcccccccccc-ccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 99887776554 56688899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCccccc
Q 001442 381 VLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILT 460 (1076)
Q Consensus 381 i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~aL~~l~~~~~~~~l~ 460 (1076)
|++.++++|+|+||+||++||.++|+++..++|.+++.+++.+.|.|+..+.+..+++|+.+|+.++.+|.+.+..+.+.
T Consensus 390 Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~ 469 (1075)
T KOG2171|consen 390 ILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILE 469 (1075)
T ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHH
Confidence 99999999999999999999999999999999999888888899999999999778999999999999999999999999
Q ss_pred CchHHHHH-HHHHHhhcCchhHHHHHHHHHHHHHHHhHhhHHhhHhhhHHHHHHHHhccCCchhhhhHHHHHHHHHHHHH
Q 001442 461 PYLDGIVS-KLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGM 539 (1076)
Q Consensus 461 ~~l~~ll~-~l~~~l~~~~~~v~~~al~ai~~l~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~i~~ 539 (1076)
||++.+|. .+..+++++++.+++.++.+||++|.+++..|.||++++||.|...+.+..+++.+.+|++.++|++.++.
T Consensus 470 pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~ 549 (1075)
T KOG2171|consen 470 PYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIAR 549 (1075)
T ss_pred HHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHH
Confidence 99999999 55666778889999999999999999999999999999999999999998888999999999999999999
Q ss_pred HhchhhhhhhHHHHHHHHHHHhcCCCCCCChhhHHHHHHHHHHHHHhccCcccchhhhhHHHHHhccCCCCccccCCCCC
Q 001442 540 AVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSD 619 (1076)
Q Consensus 540 ~~g~~~~~~~~~~ii~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~i~~~ll~~~~~~~~~~~~~~d~d 619 (1076)
++|++.|.|+..++|+.+...+.+..+.+++.++|.+.+|+++|+++|++|.||++.+||.++++...+|++...|+++
T Consensus 550 AVGke~F~~~a~eliqll~~~~~~~~~~dd~~~sy~~~~warmc~ilg~~F~p~L~~Vmppl~~ta~~~p~~~~~d~~d- 628 (1075)
T KOG2171|consen 550 AVGKEKFLPLAEELIQLLLELQGSDQDDDDPLRSYMIAFWARMCRILGDDFAPFLPVVMPPLLKTARLDPDVALSDEED- 628 (1075)
T ss_pred HhhhhhhhHhHHHHHHHHHhhcccchhhccccHHHHHHHHHHHHHHhchhhHhHHHHHhHHHHHhhccCCcccCcCchh-
Confidence 9999999999999999999987777777889999999999999999999999999999999999999999887764332
Q ss_pred ccccCCCCcccchhhcCCc-eeeecchhHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHhhhcccccCCHHHHHHHHHH
Q 001442 620 NEIEDSDDDSMETITLGDK-RIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSA 698 (1076)
Q Consensus 620 ~~~~~~d~~~~~~~~~~~~-~~~v~~~~~~~k~~A~~~l~~i~~~~~~~~~p~l~~~~~~l~~~l~~~~~~~vr~~a~~~ 698 (1076)
+.+..++++|++..++++ .++|+|+.+++|++||.+|++++..++.+|.||++++++..++.+.++||++||++|+.+
T Consensus 629 -~e~~~~~~~~e~~~~~~~e~~~I~Tsvl~eK~~A~~~Lv~~a~~lk~~F~pYve~v~~l~v~~l~f~fhdgVR~aa~~~ 707 (1075)
T KOG2171|consen 629 -EEEEQDLDGWEVVELGDKENIGIRTSVLDEKETACEALGEYAKELKEAFAPYVEQVVELMVPLLKFYFHDGVRKAAAES 707 (1075)
T ss_pred -hhhccccccchhhccCCceeeeeeehhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 222235677888888887 999999999999999999999999999999999999999888889999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHH
Q 001442 699 MPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVEALHKEPDTEICASMLDSLNECIQISGPL-LDEGQVRSIVDEI 777 (1076)
Q Consensus 699 l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~l~~l~~~i~~~g~~-~~~~~~~~~~~~l 777 (1076)
++.++.+...+..+ .+.+++.++..+.+.+++.+.+|+++++...+++++..|++.+|+. +.++....+...+
T Consensus 708 ~p~ll~~~~~A~~~------~p~~l~~l~~~~~~~l~~~l~~E~e~~vl~~vl~~f~~~i~~~G~~~L~~~~~~~~~~~~ 781 (1075)
T KOG2171|consen 708 MPQLLTCALKACQG------GPEYLKQLWEAIRPALIKALEEEPETEVLSEILESFAECIEVMGDNCLNEDGLEALLGGL 781 (1075)
T ss_pred HHHHHHHHHHHhcc------ChHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHH
Confidence 99999988776533 3458999999999999999999999999999999999999999974 7888888888887
Q ss_pred HHHHHHHHHhHHHHHHhhcCCCCChHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHhHhhhhcCCCC
Q 001442 778 KQVITASSSRKRERAERAKAEDFDAEESELIKEENEQEEEVFDQVGEILGTLIKTFKAAFLPFFDELSSYLTPMWGKDKT 857 (1076)
Q Consensus 778 ~~~l~~~~~~~~~~~~~~~~ed~d~~~~~~~~e~~e~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~ 857 (1076)
...+.....+...|.....+||+|.++.+.+. |.+..+++.+.+.+..+++.++..|.|+|+.+.|.+.+++.+++.
T Consensus 782 ~~~~l~~~~~~~~r~~~~~eed~d~~eee~~~---e~d~~ll~~i~~i~~~l~k~~k~~f~p~f~~~~p~iv~~l~~~~~ 858 (1075)
T KOG2171|consen 782 LAQLLQHFKRMQDRQEEDDEEDDDIEEEEDLD---EQDAYLLDAISDILAALAKALKGSFLPFFENFLPLIVKLLKSKKT 858 (1075)
T ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHh---hhhHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHhcCCc
Confidence 77777777666666554444555554444333 677889999999999999999999999999999999999977777
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHhhHHhHHHHHHhhccCCChhHHhhhhHHHHHHHhhcCCCchHHHHHHHHHHHHhhcC
Q 001442 858 AEERRIAICIFDDVAEQCREAALKYYETYLPFLLEACNDENQDVRQAAVYGLGVCAEFGGSVVKPLVGEALSRLNVVIRH 937 (1076)
Q Consensus 858 ~~~r~~al~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~vr~~a~~~lg~l~~~~~~~~~~~~~~il~~L~~~l~~ 937 (1076)
.. |++++|+++++++.+|+...+|+..++|.++.++.|.+++||++|+||+|.+|+++++.+.|.+...++.|...+..
T Consensus 859 ~~-r~~av~~~~d~ie~~~~a~~~~~~~~~p~~~~~~~d~~pEVRqaAsYGiGvlaq~~g~~y~~v~~~~l~~L~~~iq~ 937 (1075)
T KOG2171|consen 859 VA-RQWAVCIFDDLIEGCGEASAKYKERFLPLVLEALQDSDPEVRQAAAYGMGVLAQFGGEDYAPVCSEALPLLVQVLQP 937 (1075)
T ss_pred HH-HHHHHHHHHHHHHhcccccchHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHcC
Confidence 77 99999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChhhhhHHHHHHHHHHHHHhhcCCCCCHhhHHHHHHhhCCCCCcHHHHHHHHHHHHHHHhhcCCcccCcCcCchhh
Q 001442 938 PNALQPENLMAYDNAVSALGKICQFHRDSIDAAQVVPAWLNCLPIKGDLIEAKIVHEQLCSMVERSDSDLLGPNHQYLPK 1017 (1076)
Q Consensus 938 ~~~~~~~~~~~~~na~~al~~i~~~~~~~~~~~~~l~~~l~~lp~~~d~~e~~~~~~~l~~li~~~~~~~~~~~~~~l~~ 1017 (1076)
++.+.+.+..+++||++|++||+.+++..+++++++|.||+.||..+|.+|+..+|.+|+.|+++++|.+++++++++|+
T Consensus 938 ~~ar~Ee~~~ateNa~gaiaki~~~~~~~i~vdqvl~~~l~~LPl~~D~eEa~~iy~~l~~L~e~n~p~v~~~~n~~ip~ 1017 (1075)
T KOG2171|consen 938 PLARTEENRRATENAIGAIAKILLFNPNRIPVDQVLPAWLSWLPLKEDKEEAVPIYTFLSDLYESNHPIVLGPNNQNIPK 1017 (1075)
T ss_pred hhhhhHHHhHHHHHHHHHHHHHHHhCCccCcHHHHHHHHHHhCCCccchhhhhhHHHHHHHHHHhCCCeeeCCCcccchH
Confidence 98887888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCCHHHHHHHHhhhC
Q 001442 1018 IVSVFAEILCGKDLATEQTLSRIVNLLKQLQQTLPPATLASTWSSLQPQQQLALQSILS 1076 (1076)
Q Consensus 1018 i~~~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~l~~~~~ 1076 (1076)
|+.++.+.+.+.+...+++..++..+++++.+ |...|.+.|++||++++++||+.|+
T Consensus 1018 i~~v~~~~~~~~~~~~~~~~~r~~~ilkq~~~--~~~~~~~~~~~L~~~~~~~lq~~~~ 1074 (1075)
T KOG2171|consen 1018 ILSVCAESLADKKIEPRSTLARVIEILKQFLA--PPSQFAALLATLPPDQQQALQAVLN 1074 (1075)
T ss_pred HHHHHHhhhhccCCCccchHHHHHHHHHHHhc--CHHHHHHHHHhCCHHHHHHHHHHhc
Confidence 99999999997777777777799999999988 5555999999999999999999873
No 2
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.3e-77 Score=628.07 Aligned_cols=790 Identities=22% Similarity=0.334 Sum_probs=636.9
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHcc--CCCHHHHHHHHHHHHHhcccCCCCcccCCCHh
Q 001442 22 APFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQR--SPHPEARAMAAVLLRKLLTRDDSFLWPRLSLH 99 (1076)
Q Consensus 22 ~~l~~lL~~~~s~d~~~r~~Ae~~L~~~~~~~p~~~~~~L~~il~~--~~~~~~R~~a~v~Lk~~i~~~~~~~w~~l~~~ 99 (1076)
+|+.++|++.+|||+++|+.+...+.++.. +|+ |..+|+.+|.. +.+..+|..|+.+|||.+..+ |..++++
T Consensus 13 ~ql~~lLk~s~Spn~~~~~~~~~~leq~~~-~pd-fnnYL~~IL~~~~~~d~~~Rs~aGLlLKNnvr~~----~~~~~~~ 86 (885)
T KOG2023|consen 13 QQLAQLLKNSQSPNSETRNNVQEKLEQFNL-FPD-FNNYLIYILIRAKSEDVPTRSLAGLLLKNNVRGH----YNSIPSE 86 (885)
T ss_pred HHHHHHHHhccCCChHHHHHHHHHHHHHhc-ccc-hhceeeEEEecccccchhHHHHhhhhHhcccccc----ccCCChH
Confidence 677888899999999999999999999998 788 68999999975 778889999999999999988 9999999
Q ss_pred HHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhcccCCCCcchhHHHHHHhhcCCCHHHHHHHHHHHHHHH--------
Q 001442 100 TQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLI-------- 171 (1076)
Q Consensus 100 ~~~~lk~~Ll~~l~~~~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~~~~~~~r~~al~~L~~l~-------- 171 (1076)
.+..+|+.+++.+. +.++.||..++.+|.+|+... ....||+++|.|.+++.+++.+..++|+.+|..++
T Consensus 87 ~~~yiKs~~l~~lg-d~~~lIr~tvGivITTI~s~~-~~~~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~ld 164 (885)
T KOG2023|consen 87 VLDYIKSECLHGLG-DASPLIRATVGIVITTIASTG-GLQHWPELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLD 164 (885)
T ss_pred HHHHHHHHHHhhcc-CchHHHHhhhhheeeeeeccc-ccccchhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHh
Confidence 99999999999998 678899999999999999854 34799999999999999999999999999999983
Q ss_pred ------------HHHHHhhCCcc-----------------hHhHHhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHc
Q 001442 172 ------------INFIQCLTSSA-----------------DRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAG 222 (1076)
Q Consensus 172 ------------~~~~~~l~~~~-----------------~~~~~~~l~p~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~ 222 (1076)
..|++..++++ ..+.+-..+..+++.++...++.++++|+.+|..|.-+.+
T Consensus 165 s~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Lle 244 (885)
T KOG2023|consen 165 SDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLE 244 (885)
T ss_pred hhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHH
Confidence 33444443321 1122333456788888888899999999999999999999
Q ss_pred cCcHHHHHhHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHhhcccchhhccchhhHHHHHHHHHHhhcCCCCCcc--
Q 001442 223 TEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPL-- 300 (1076)
Q Consensus 223 ~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~dd~~-- 300 (1076)
..++.+.||+..++++|+....+ .++++...|+|||.++++ .|.-...+.+|+.+++|+++..|.+.++|..
T Consensus 245 vr~dkl~phl~~IveyML~~tqd--~dE~VALEACEFwla~ae----qpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL 318 (885)
T KOG2023|consen 245 VRPDKLVPHLDNIVEYMLQRTQD--VDENVALEACEFWLALAE----QPICKEVLQPYLDKLIPVLLSGMVYSDDDIILL 318 (885)
T ss_pred hcHHhcccchHHHHHHHHHHccC--cchhHHHHHHHHHHHHhc----CcCcHHHHHHHHHHHHHHHHccCccccccHHHh
Confidence 99999999999999999998854 578899999999999999 4433344789999999999999987653310
Q ss_pred -------------------cc------------C-CCCCCc--ccC---CCCchhhHHHHHHHHHHHcCCCcchHHHHHH
Q 001442 301 -------------------WH------------S-AETEDE--DAG---ESSNYSVGQECLDRLAIALGGNTIVPVASEQ 343 (1076)
Q Consensus 301 -------------------~~------------~-~~~e~~--d~~---e~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~ 343 (1076)
+. . +++||+ |+| +|+.|++++.+|+.++..+| ++++|.++|+
T Consensus 319 ~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~-~elL~~l~Pl 397 (885)
T KOG2023|consen 319 KNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFG-DELLPILLPL 397 (885)
T ss_pred cCccccccCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHhhH-HHHHHHHHHH
Confidence 00 0 011111 111 25667889999999999998 8999999999
Q ss_pred HHHhhcCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhh
Q 001442 344 LPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQV 423 (1076)
Q Consensus 344 l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l 423 (1076)
+++.+.+++|++|+++++++|++++||.+.+.+|++.++|++++.|.|..|.||..+||+|++++.|....-..+|+..+
T Consensus 398 Lk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~pv 477 (885)
T KOG2023|consen 398 LKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFKPV 477 (885)
T ss_pred HHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998655446899999
Q ss_pred HHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHhHhhHH--
Q 001442 424 LPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQ-- 501 (1076)
Q Consensus 424 l~~l~~~l~~~~~~~v~~~a~~aL~~l~~~~~~~~l~~~l~~ll~~l~~~l~~~~~~v~~~al~ai~~l~~~~~~~~~-- 501 (1076)
+..+++.+-| ++.+||++||.|+..+-+..+++ +.||+..++..|...+.....+-..-...|||++|.++|..+.
T Consensus 478 L~~ll~~llD-~NK~VQEAAcsAfAtleE~A~~e-LVp~l~~IL~~l~~af~kYQ~KNLlILYDAIgtlAdsvg~~Ln~~ 555 (885)
T KOG2023|consen 478 LEGLLRRLLD-SNKKVQEAACSAFATLEEEAGEE-LVPYLEYILDQLVFAFGKYQKKNLLILYDAIGTLADSVGHALNKP 555 (885)
T ss_pred HHHHHHHHhc-ccHHHHHHHHHHHHHHHHhccch-hHHHHHHHHHHHHHHHHHHhhcceehHHHHHHHHHHHHHHhcCcH
Confidence 9999999999 99999999999999999999877 6799999999999999887766666789999999999998764
Q ss_pred hhHhhhHHHHHHHHhccCCchhhhhHHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHhcCCCCCCChhhHHHHHHHHH
Q 001442 502 KYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWAR 581 (1076)
Q Consensus 502 ~~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~g~~~~~~~~~~ii~~l~~~~~~~~~~~~~~~~~~~~~~~~ 581 (1076)
.|+..+||.|.+.|..-.+.+ ..+ ...+||++.++.++| +.|.||++++++-+.++.. ++...
T Consensus 556 ~YiqiLmPPLi~KW~~lsd~D-KdL-fPLLEClSsia~AL~-~gF~P~~~~Vy~Rc~~il~--------------~t~q~ 618 (885)
T KOG2023|consen 556 AYIQILMPPLIEKWELLSDSD-KDL-FPLLECLSSIASALG-VGFLPYAQPVYQRCFRILQ--------------KTLQL 618 (885)
T ss_pred HHHHHhccHHHHHHHhcCccc-chH-HHHHHHHHHHHHHHh-ccccccCHHHHHHHHHHHH--------------HHHHH
Confidence 689999999999988744322 222 245788888888888 6788887777665443211 00000
Q ss_pred HHHHhccCcccchhhhhHHHHHhccCCCCccccCCCCCccccCCCCcccchhhcCCceeeecchhHHHHHHHHHHHHHHH
Q 001442 582 LCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATACNMLCCYA 661 (1076)
Q Consensus 582 l~~~~~~~~~~~l~~i~~~ll~~~~~~~~~~~~~~d~d~~~~~~d~~~~~~~~~~~~~~~v~~~~~~~k~~A~~~l~~i~ 661 (1076)
++. ...++.+..
T Consensus 619 ~~~--------------------~~~~~~~~~------------------------------------------------ 630 (885)
T KOG2023|consen 619 LAK--------------------VQQDPTVEA------------------------------------------------ 630 (885)
T ss_pred HHh--------------------ccCCccccC------------------------------------------------
Confidence 100 000000000
Q ss_pred HHhhhcccccHHHHHHHhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHccC
Q 001442 662 DELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVEALHKE 741 (1076)
Q Consensus 662 ~~~~~~~~p~l~~~~~~l~~~l~~~~~~~vr~~a~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~ 741 (1076)
T Consensus 631 -------------------------------------------------------------------------------- 630 (885)
T KOG2023|consen 631 -------------------------------------------------------------------------------- 630 (885)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcCCCCChHhhhhhhhhhhhHHHHHHH
Q 001442 742 PDTEICASMLDSLNECIQISGPLLDEGQVRSIVDEIKQVITASSSRKRERAERAKAEDFDAEESELIKEENEQEEEVFDQ 821 (1076)
Q Consensus 742 ~~~~~~~~~l~~l~~~i~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ed~d~~~~~~~~e~~e~~~~~~~~ 821 (1076)
++.+.+..++.-++-+.+.+| .++++++.. .
T Consensus 631 pdkdfiI~sLDL~SGLaegLg-----~~ie~Lva~---------------------------------------s----- 661 (885)
T KOG2023|consen 631 PDKDFIIVSLDLLSGLAEGLG-----SHIEPLVAQ---------------------------------------S----- 661 (885)
T ss_pred CCcceEEEeHHHHhHHHHHhh-----hchHHHhhh---------------------------------------c-----
Confidence 000000000111111111111 111111000 0
Q ss_pred HHHHHHHHHHHhhhchhhhHHHHHHhHhhhhcCCCCHHHHHHHHHHHHHHHHHhhhhhHhhHHhHHHHHHhhccCCChhH
Q 001442 822 VGEILGTLIKTFKAAFLPFFDELSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREAALKYYETYLPFLLEACNDENQDV 901 (1076)
Q Consensus 822 ~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~v 901 (1076)
.+...++..+ .+..+++|+++++++|++.++|.+.+.|+...++|.+...+..+.-++
T Consensus 662 ---------------------nl~~lll~C~-~D~~peVRQS~FALLGDltk~c~~~v~p~~~~fl~~lg~Nl~~~~isv 719 (885)
T KOG2023|consen 662 ---------------------NLLDLLLQCL-QDEVPEVRQSAFALLGDLTKACFEHVIPNLADFLPILGANLNPENISV 719 (885)
T ss_pred ---------------------cHHHHHHHHh-ccCChHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHhhcCChhhchH
Confidence 0222222223 578899999999999999999999999999999999998888888999
Q ss_pred HhhhhHHHHHHHhhcCCCchHHHHHHHHHHHHhhcCCCCCChhhhhHHHHHHHHHHHHHhhcCCCC--CHhhHHHHHHhh
Q 001442 902 RQAAVYGLGVCAEFGGSVVKPLVGEALSRLNVVIRHPNALQPENLMAYDNAVSALGKICQFHRDSI--DAAQVVPAWLNC 979 (1076)
Q Consensus 902 r~~a~~~lg~l~~~~~~~~~~~~~~il~~L~~~l~~~~~~~~~~~~~~~na~~al~~i~~~~~~~~--~~~~~l~~~l~~ 979 (1076)
+.||+|++|+++...+...++|+..++..|..++.++.. ...+.+|.+.++||+...+|+.+ +++.++..|+..
T Consensus 720 ~nNA~WAiGeia~k~g~~~~~~v~~vl~~L~~iin~~~~----~~tllENtAITIGrLg~~~Pe~vAp~l~~f~~pWc~s 795 (885)
T KOG2023|consen 720 CNNAIWAIGEIALKMGLKMKQYVSPVLEDLITIINRQNT----PKTLLENTAITIGRLGYICPEEVAPHLDSFMRPWCTS 795 (885)
T ss_pred HHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHhcccCc----hHHHHHhhhhhhhhhhccCHHhcchhHHHHHHHHHHH
Confidence 999999999999999999999999999999999987753 45899999999999999999988 699999999999
Q ss_pred CCCCCcHHHHHHHHHHHHHHHhhcCCcccCcCcCchhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhCChhhHHHH
Q 001442 980 LPIKGDLIEAKIVHEQLCSMVERSDSDLLGPNHQYLPKIVSVFAEILCGKDLATEQTLSRIVNLLKQLQQTLPPATLAST 1059 (1076)
Q Consensus 980 lp~~~d~~e~~~~~~~l~~li~~~~~~~~~~~~~~l~~i~~~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ 1059 (1076)
+....|.+|+.++|.++|.++..++..++. -+.+|+.+..++..+..+++..+..+|..+++++++.+|+++
T Consensus 796 l~~i~DneEK~sAFrG~c~mi~vNp~~vv~--------~~~f~c~aiAsw~np~~~l~~~f~kiL~g~k~qvg~~nW~~~ 867 (885)
T KOG2023|consen 796 LRNIDDNEEKESAFRGLCNMINVNPSGVVS--------SFIFICDAIASWSNPEDDLRDEFYKILQGFKNQVGKINWQRF 867 (885)
T ss_pred hcccccchhHHHHHHHHHHheeeCchhhhh--------hhHHHHHHHhcccChHHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 998889999999999999999655444433 455777777777666788999999999999999999999999
Q ss_pred HhcCCHHHHHHHHhhhC
Q 001442 1060 WSSLQPQQQLALQSILS 1076 (1076)
Q Consensus 1060 ~~~l~~~~~~~l~~~~~ 1076 (1076)
..++||+.+..|+++|+
T Consensus 868 ~~qf~P~~~erl~a~y~ 884 (885)
T KOG2023|consen 868 SEQFPPPLKERLQAFYG 884 (885)
T ss_pred hhcCChhHHHHHHHHhC
Confidence 99999999999999986
No 3
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.2e-55 Score=472.19 Aligned_cols=728 Identities=20% Similarity=0.308 Sum_probs=576.8
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHcc-CCCHHHHHHHHHHHHHhcccCC-------CCccc
Q 001442 23 PFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQR-SPHPEARAMAAVLLRKLLTRDD-------SFLWP 94 (1076)
Q Consensus 23 ~l~~lL~~~~s~d~~~r~~Ae~~L~~~~~~~p~~~~~~L~~il~~-~~~~~~R~~a~v~Lk~~i~~~~-------~~~w~ 94 (1076)
++.++|..+.|||...|+.||++|+++..++...|+..|.++|.+ ..++..|..|++.|||.+..++ ...|-
T Consensus 2 ~~~~~le~tlSpD~n~~~~Ae~~l~~~~~~nf~~F~~~Ls~vl~n~~~~~~~R~~AGL~LKN~L~akd~~~k~~~~qRWl 81 (859)
T KOG1241|consen 2 ELLELLEKTLSPDQNVRKRAEKQLEQAQSQNFPQFLVLLSEVLANDNSSDVARMAAGLQLKNSLTAKDPERKQQYQQRWL 81 (859)
T ss_pred cHHHHHHHHcCCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHhccCCcHHHHHHHhHHHhhhhccCCHHHHHHHHHHHH
Confidence 567888999999999999999999999988888899999999987 6779999999999999998764 45699
Q ss_pred CCCHhHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhcccCCCCcchhHHHHHHhhcCCCHH-HHHHHHHHHHHHH--
Q 001442 95 RLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVK-LQESAFLIFAQLI-- 171 (1076)
Q Consensus 95 ~l~~~~~~~lk~~Ll~~l~~~~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~~~~~~-~r~~al~~L~~l~-- 171 (1076)
.++.+.|+++|+.++..|++ +.+..+..++++++.||..++|.+.||++++.+.....++.+. ++++++.++++++
T Consensus 82 ~l~~e~reqVK~~il~tL~~-~ep~~~s~Aaq~va~IA~~ElP~n~wp~li~~lv~nv~~~~~~~~k~~slealGyice~ 160 (859)
T KOG1241|consen 82 QLPAEIREQVKNNILRTLGS-PEPRRPSSAAQCVAAIACIELPQNQWPELIVTLVSNVGEEQASMVKESSLEALGYICED 160 (859)
T ss_pred cCCHHHHHHHHHHHHHHcCC-CCCCccchHHHHHHHHHHhhCchhhCHHHHHHHHHhcccccchHHHHHHHHHHHHHHcc
Confidence 99999999999999999984 7888999999999999999999999999999999998776654 8999999999993
Q ss_pred --------------HHHHHhhCCcc--hHhHHh---hh----------------HHHHHHHHHHHHhCCCHHHHHHHHHH
Q 001442 172 --------------INFIQCLTSSA--DRDRFQ---DL----------------LPLMMRTLTESLNNGNEATAQEALEL 216 (1076)
Q Consensus 172 --------------~~~~~~l~~~~--~~~~~~---~l----------------~p~~l~~l~~~~~~~~~~~~~~~~~~ 216 (1076)
..++++....+ ....+. .+ ...+|+++++..+++|.+++..++.|
T Consensus 161 i~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~C 240 (859)
T KOG1241|consen 161 IDPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPDEEIQVAAFQC 240 (859)
T ss_pred CCHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCcHHHHHHHHHH
Confidence 22334433211 111111 11 13467777778888999999999999
Q ss_pred HHHHHccCcHHHHHhHHH-HHHHHHHHhcCCCcchhHHHHHHHHHHHHHHhhcc------------cch-hhccchhhHH
Q 001442 217 LIELAGTEPRFLRRQLVD-VVGSMLQIAEAESLEEGTRHLAIEFVITLAEARER------------APG-MMRKLPQFIN 282 (1076)
Q Consensus 217 l~~l~~~~~~~~~~~l~~-l~~~l~~~~~~~~~~~~~r~~al~~l~~l~~~~~~------------~~~-~~~~~~~~~~ 282 (1076)
|+++...+++++.+|+.. ++...+..+. +.++++..+++|||+++++.+.. .|. -+.-...-+.
T Consensus 241 lvkIm~LyY~~m~~yM~~alfaitl~amk--s~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~ 318 (859)
T KOG1241|consen 241 LVKIMSLYYEFMEPYMEQALFAITLAAMK--SDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQ 318 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHh
Confidence 999999999999999986 8887777775 56899999999999999986311 110 0000111345
Q ss_pred HHHHHHHHhhcCCCCCccccCCCCCCcccCCCCchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhcCCChhHHHHHHHH
Q 001442 283 RLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIA 362 (1076)
Q Consensus 283 ~l~~~l~~~l~~~~dd~~~~~~~~e~~d~~e~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~ 362 (1076)
.++|.+++.|...+++ +|+|+|++.++|..||..+++..| +.++|+++|++.+.++++||+.|++|.++
T Consensus 319 ~v~P~Ll~~L~kqde~----------~d~DdWnp~kAAg~CL~l~A~~~~-D~Iv~~Vl~Fiee~i~~pdwr~reaavmA 387 (859)
T KOG1241|consen 319 DVVPVLLELLTKQDED----------DDDDDWNPAKAAGVCLMLFAQCVG-DDIVPHVLPFIEENIQNPDWRNREAAVMA 387 (859)
T ss_pred HhhHHHHHHHHhCCCC----------cccccCcHHHHHHHHHHHHHHHhc-ccchhhhHHHHHHhcCCcchhhhhHHHHH
Confidence 6889999988765433 244579999999999999999998 79999999999999999999999999999
Q ss_pred HHHHHhhcH-HHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhH-HhhhhhhhHHHHHhhccCCCChhHH
Q 001442 363 LAQIAEGCA-KVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDL-QNQFHPQVLPALAGAMDDFQNPRVQ 440 (1076)
Q Consensus 363 l~~l~~~~~-~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~-~~~~~~~ll~~l~~~l~~~~~~~v~ 440 (1076)
+|++.+|.. +.+.+.+.+.+|.++..+.|++-.||.++.|++|+++++++..+ ...+...+++.++.+|.| .|+|.
T Consensus 388 FGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~D--ePrva 465 (859)
T KOG1241|consen 388 FGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLND--EPRVA 465 (859)
T ss_pred HHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhh--CchHH
Confidence 999999854 56678888999999999999999999999999999999987543 235788999999999998 79999
Q ss_pred HHHHHHHHHhhhcCCc--------ccccCchHHHHHHHHHHhhcC---chhHHHHHHHHHHHHHHHhHhhHHhhHhhhHH
Q 001442 441 AHAASAVLNFSENCTP--------EILTPYLDGIVSKLLVLLQNG---KQMVQEGALTALASVADSSQEHFQKYYDAVMP 509 (1076)
Q Consensus 441 ~~a~~aL~~l~~~~~~--------~~l~~~l~~ll~~l~~~l~~~---~~~v~~~al~ai~~l~~~~~~~~~~~~~~i~~ 509 (1076)
..+||++..+++.+.. +...|+++.++..|+..-+.. ....|..++++++.++..+++...+....+.+
T Consensus 466 ~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~~~~l 545 (859)
T KOG1241|consen 466 SNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQKLTL 545 (859)
T ss_pred HHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 9999999999976421 134578999999999887663 46799999999999999988876554444443
Q ss_pred H----HHHHHhc-----cCCchhhhhHHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHhcCCCCCCChhhHHHHHHHH
Q 001442 510 F----LKAILVN-----ATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWA 580 (1076)
Q Consensus 510 ~----L~~~l~~-----~~~~~~~~lr~~a~~~l~~i~~~~g~~~~~~~~~~ii~~l~~~~~~~~~~~~~~~~~~~~~~~ 580 (1076)
. |.+.++. ........|.+-...+++.|.+.+|. .+.++.+.+|..+++++++. ....+.+.++.+.+
T Consensus 546 ~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~-~~~~~~d~iM~lflri~~s~--~s~~v~e~a~laV~ 622 (859)
T KOG1241|consen 546 VILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGS-DIREVSDQIMGLFLRIFESK--RSAVVHEEAFLAVS 622 (859)
T ss_pred HHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccc-cchhHHHHHHHHHHHHHcCC--ccccchHHHHHHHH
Confidence 3 3333331 11223456777778899999999995 78999999999999977652 23346778888999
Q ss_pred HHHHHhccCcccchhhhhHHHHHhccCCCCccccCCCCCccccCCCCcccchhhcCCceeeecchhHHHHHHHHHHHHHH
Q 001442 581 RLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATACNMLCCY 660 (1076)
Q Consensus 581 ~l~~~~~~~~~~~l~~i~~~ll~~~~~~~~~~~~~~d~d~~~~~~d~~~~~~~~~~~~~~~v~~~~~~~k~~A~~~l~~i 660 (1076)
.++..+|+.|..|++.+.|.+...++.-.+ + .-=..|+.++|.+
T Consensus 623 tl~~~Lg~~F~kym~~f~pyL~~gL~n~~e---------------------~---------------qVc~~aVglVgdl 666 (859)
T KOG1241|consen 623 TLAESLGKGFAKYMPAFKPYLLMGLSNFQE---------------------Y---------------QVCAAAVGLVGDL 666 (859)
T ss_pred HHHHHHhHhHHHHHHHHHHHHHHHhhcchH---------------------H---------------HHHHHHHHHHHHH
Confidence 999999999999999999999998842110 0 0113578889999
Q ss_pred HHHhhhcccccHHHHHHHhhhccccc-CCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHH-
Q 001442 661 ADELKEGFFPWIDQVAPTLVPLLKFY-FHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVEAL- 738 (1076)
Q Consensus 661 ~~~~~~~~~p~l~~~~~~l~~~l~~~-~~~~vr~~a~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l- 738 (1076)
++.++..|.||...++..++..|+.+ .|.+|+-+..++++++.-++.. .+.++++.+++.+..+-
T Consensus 667 ~raL~~~i~py~d~~mt~Lvq~Lss~~~hR~vKP~IlS~FgDIAlaIg~-------------~F~~Yl~~vm~llq~as~ 733 (859)
T KOG1241|consen 667 ARALEDDILPYCDELMTVLVQCLSSPNLHRNVKPAILSVFGDIALAIGA-------------DFEPYLEMVMPLLQQASS 733 (859)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHccCccccccccchHHHHHHHHHHHHHH-------------hHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999988753 3567888999999999887753 35678888888766665
Q ss_pred -ccCC--------cHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcCCCCChHhhhhhh
Q 001442 739 -HKEP--------DTEICASMLDSLNECIQISGPLLDEGQVRSIVDEIKQVITASSSRKRERAERAKAEDFDAEESELIK 809 (1076)
Q Consensus 739 -~~~~--------~~~~~~~~l~~l~~~i~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ed~d~~~~~~~~ 809 (1076)
+.++ -.+++..++++..-++..++.......+.+++..+++++.+... +++
T Consensus 734 ~~~d~~~~~~~dYvd~LRe~~leay~gi~qglk~~~~~~~~~p~v~~I~sfi~~I~~----------e~~---------- 793 (859)
T KOG1241|consen 734 VQTDPADDSMVDYVDELREGILEAYTGIIQGLKTHADVMLVQPYVPHIISFIDRIAA----------EPD---------- 793 (859)
T ss_pred ccCCCCcccHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhcchHHHHHHHHHHhc----------Ccc----------
Confidence 2222 12456677888888888777545556677888888888876531 122
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHhhhchhhhHH
Q 001442 810 EENEQEEEVFDQVGEILGTLIKTFKAAFLPFFD 842 (1076)
Q Consensus 810 e~~e~~~~~~~~~~~~l~~l~~~~~~~~~~~~~ 842 (1076)
.++.+...++.+||.|+..+|....+++.
T Consensus 794 ----~~~~~~~~a~GlIgDL~~~fg~~~~~~~~ 822 (859)
T KOG1241|consen 794 ----VSEALHAAALGLIGDLATMFGKGVIKLFL 822 (859)
T ss_pred ----cchHHHHHHHHHHHHHHHHcccchhhhhc
Confidence 12456778999999999999987665443
No 4
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=100.00 E-value=3.6e-44 Score=370.22 Aligned_cols=738 Identities=15% Similarity=0.205 Sum_probs=541.8
Q ss_pred CChHHHHHHHHH-hcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHcc-CCCHHHHHHHHHHHHHhcccCC-------
Q 001442 19 PDSAPFETLISH-LMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQR-SPHPEARAMAAVLLRKLLTRDD------- 89 (1076)
Q Consensus 19 ~~~~~l~~lL~~-~~s~d~~~r~~Ae~~L~~~~~~~p~~~~~~L~~il~~-~~~~~~R~~a~v~Lk~~i~~~~------- 89 (1076)
|...++.++.++ ++|||++.|..||++|.++...+..+|+..+.+.+.+ ..++..|..|++.|||.+..++
T Consensus 1 M~~~ef~~l~~n~vLspD~n~rl~aE~ql~~l~~~dF~qf~~ll~qvl~d~ns~~~~Rm~agl~LKN~l~a~d~~~~~~~ 80 (858)
T COG5215 1 MKKSEFRCLGKNHVLSPDPNARLRAEAQLLELQSGDFEQFISLLVQVLCDLNSNDQLRMVAGLILKNSLHANDPELQKGC 80 (858)
T ss_pred CchHHHHHHHhcccCCCCCCccccHHHHHHHhccccHHHHHHHHHHHHhccCCcHHHHHHHHHHHhhhhhcCCHHHHHHH
Confidence 344577777777 6899999999999999999888888899999999987 7889999999999999998753
Q ss_pred CCcccCCCHhHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhcccCCCCcchhHHHHHHhhcCCCH-HHHHHHHHHHH
Q 001442 90 SFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSV-KLQESAFLIFA 168 (1076)
Q Consensus 90 ~~~w~~l~~~~~~~lk~~Ll~~l~~~~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~~~~~-~~r~~al~~L~ 168 (1076)
...|..+++|.|+++|...++.|.+ +.+...+.++++++.||+.++|++.||+++..+....-++.+ ..+..++.+++
T Consensus 81 ~qrW~~~~~E~k~qvK~~al~aL~s-~epr~~~~Aaql~aaIA~~Elp~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~g 159 (858)
T COG5215 81 SQRWLGMRHESKEQVKGMALRALKS-PEPRFCTMAAQLLAAIARMELPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICG 159 (858)
T ss_pred HHhhccCCHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHhhCccccchHHHHHHHHhccccCchHhHHHHHHHHH
Confidence 4569999999999999999999984 789999999999999999999999999999999998877765 56667788888
Q ss_pred HHHHH----------------HHHhhCCcc--hH---hHHhhh----------------HHHHHHHHHHHHhCCCHHHHH
Q 001442 169 QLIIN----------------FIQCLTSSA--DR---DRFQDL----------------LPLMMRTLTESLNNGNEATAQ 211 (1076)
Q Consensus 169 ~l~~~----------------~~~~l~~~~--~~---~~~~~l----------------~p~~l~~l~~~~~~~~~~~~~ 211 (1076)
+.+.+ ++.+-.+.+ .. ..++.+ ...+|++.++..+.+|+++..
T Consensus 160 y~ces~~Pe~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceatq~~d~e~q~ 239 (858)
T COG5215 160 YHCESEAPEDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEATQGNDEELQH 239 (858)
T ss_pred HHhhccCHHHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhccCCcHHHHH
Confidence 77322 111111111 00 111111 235677778888889999999
Q ss_pred HHHHHHHHHHccCcHHHHHhHHHHH-HHHHHHhcCCCcchhHHHHHHHHHHHHHHhhc-------ccchhhccchh----
Q 001442 212 EALELLIELAGTEPRFLRRQLVDVV-GSMLQIAEAESLEEGTRHLAIEFVITLAEARE-------RAPGMMRKLPQ---- 279 (1076)
Q Consensus 212 ~~~~~l~~l~~~~~~~~~~~l~~l~-~~l~~~~~~~~~~~~~r~~al~~l~~l~~~~~-------~~~~~~~~~~~---- 279 (1076)
.++.||+++...+++++.+|+...+ ......+ ++.++++..+++|||+++++.+. +.|..-.+...
T Consensus 240 aafgCl~kim~LyY~fm~~ymE~aL~alt~~~m--ks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~a 317 (858)
T COG5215 240 AAFGCLNKIMMLYYKFMQSYMENALAALTGRFM--KSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARA 317 (858)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHH
Confidence 9999999999999999999988644 4444555 45689999999999999998642 22211001111
Q ss_pred hHHHHHHHHHHhhcCCCCCccccCCCCCCcccCCCCchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhcCCChhHHHHH
Q 001442 280 FINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAA 359 (1076)
Q Consensus 280 ~~~~l~~~l~~~l~~~~dd~~~~~~~~e~~d~~e~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aa 359 (1076)
-+..++|.++..|....+|+ ++|+|++..+|..||..+++..| +.+..+++.++.+.+++++|..|++|
T Consensus 318 av~dvlP~lL~LL~~q~ed~----------~~DdWn~smaA~sCLqlfaq~~g-d~i~~pVl~FvEqni~~~~w~nreaa 386 (858)
T COG5215 318 AVADVLPELLSLLEKQGEDY----------YGDDWNPSMAASSCLQLFAQLKG-DKIMRPVLGFVEQNIRSESWANREAA 386 (858)
T ss_pred HHHHHHHHHHHHHHhcCCCc----------cccccchhhhHHHHHHHHHHHhh-hHhHHHHHHHHHHhccCchhhhHHHH
Confidence 24568999999987654432 34578899999999999999998 67888899999999999999999999
Q ss_pred HHHHHHHHhhcH-HHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHh-hhhhhhHHHHHhhccCCCCh
Q 001442 360 LIALAQIAEGCA-KVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQN-QFHPQVLPALAGAMDDFQNP 437 (1076)
Q Consensus 360 l~~l~~l~~~~~-~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~-~~~~~ll~~l~~~l~~~~~~ 437 (1076)
.+++|.+.++.- ..+.+++++.+|.|...+.|+.-.|+..+.||+|+++.+....+.. .++...+..++.++.| +|
T Consensus 387 vmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va~~i~p~~Hl~~~vsa~liGl~D--~p 464 (858)
T COG5215 387 VMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVAMIISPCGHLVLEVSASLIGLMD--CP 464 (858)
T ss_pred HHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHHHhcCccccccHHHHHHHhhhhc--cc
Confidence 999999999854 5566889999999999999999999999999999999988665532 3677788888888888 78
Q ss_pred hHHHHHHHHHHHhhhcCCc------ccccCchHHHHHHHHHHhh--cCchhHHHHHHHHHHHHHHHhHhhHHhhHhhhHH
Q 001442 438 RVQAHAASAVLNFSENCTP------EILTPYLDGIVSKLLVLLQ--NGKQMVQEGALTALASVADSSQEHFQKYYDAVMP 509 (1076)
Q Consensus 438 ~v~~~a~~aL~~l~~~~~~------~~l~~~l~~ll~~l~~~l~--~~~~~v~~~al~ai~~l~~~~~~~~~~~~~~i~~ 509 (1076)
.+...++|...++++++.+ +.+.++++.++..|+..-+ ......|..+++++|+++..+++...+.+..+..
T Consensus 465 ~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~a~~~~ 544 (858)
T COG5215 465 FRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILICPDAVSDILAGFYD 544 (858)
T ss_pred hHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchhHHHHHHHHHH
Confidence 8889999999999987643 3456778888888876543 3456788999999999999998877766666665
Q ss_pred HHHHHHhccCCchhhhhHHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHhcCCCCCCChhhHHHHHHHHHHHHHhccC
Q 001442 510 FLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQD 589 (1076)
Q Consensus 510 ~L~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~g~~~~~~~~~~ii~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 589 (1076)
+....+. +|++..+..+..+.-.. . +.+.+-.+..+..+.+..+.+
T Consensus 545 ~~~~kl~---------------~~isv~~q~l~~eD~~~-~------------------~elqSN~~~vl~aiir~~~~~ 590 (858)
T COG5215 545 YTSKKLD---------------ECISVLGQILATEDQLL-V------------------EELQSNYIGVLEAIIRTRRRD 590 (858)
T ss_pred HHHHHHH---------------HHHHHhhhhhhhHHHHH-H------------------HHHHHHHHHHHHHHHHhcCCC
Confidence 5554432 24444332221110000 1 112233455677788888888
Q ss_pred cccchhhhhHHHHHhccCC-CCccccCCCCCccccCCCCcccchhhcCCceeeecchhHHHHHHHHHHHHHHHHHhhhcc
Q 001442 590 FLPYMSVVMPPLLQSAQLK-PDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGF 668 (1076)
Q Consensus 590 ~~~~l~~i~~~ll~~~~~~-~~~~~~~~d~d~~~~~~d~~~~~~~~~~~~~~~v~~~~~~~k~~A~~~l~~i~~~~~~~~ 668 (1076)
+.+--+.+|..+++.++.. |.+. . ..-..+++.++.++++.|
T Consensus 591 ie~v~D~lm~Lf~r~les~~~t~~-~------------------------------------~dV~~aIsal~~sl~e~F 633 (858)
T COG5215 591 IEDVEDQLMELFIRILESTKPTTA-F------------------------------------GDVYTAISALSTSLEERF 633 (858)
T ss_pred cccHHHHHHHHHHHHHhccCCchh-h------------------------------------hHHHHHHHHHHHHHHHHH
Confidence 9988888999999988653 2111 0 112455888888999999
Q ss_pred cccHHHHHHHhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHccC-CcHHHH
Q 001442 669 FPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVEALHKE-PDTEIC 747 (1076)
Q Consensus 669 ~p~l~~~~~~l~~~l~~~~~~~vr~~a~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~-~~~~~~ 747 (1076)
..|++.++|.+.+.++.. ...|-..|...++.|.+.... .+..+.+.++..|++.+.++ .++++.
T Consensus 634 e~y~~~fiPyl~~aln~~-d~~v~~~avglvgdlantl~~-------------df~~y~d~~ms~LvQ~lss~~~~R~lK 699 (858)
T COG5215 634 EQYASKFIPYLTRALNCT-DRFVLNSAVGLVGDLANTLGT-------------DFNIYADVLMSSLVQCLSSEATHRDLK 699 (858)
T ss_pred HHHHhhhhHHHHHHhcch-hHHHHHHHHHHHHHHHHHhhh-------------hHHHHHHHHHHHHHHHhcChhhccccc
Confidence 999999999999888653 556777888888888876632 35677888888999999875 467777
Q ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcCCCCChHhhhhhhhhhhhHHHHHHHHHHHHH
Q 001442 748 ASMLDSLNECIQISGPLLDEGQVRSIVDEIKQVITASSSRKRERAERAKAEDFDAEESELIKEENEQEEEVFDQVGEILG 827 (1076)
Q Consensus 748 ~~~l~~l~~~i~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ed~d~~~~~~~~e~~e~~~~~~~~~~~~l~ 827 (1076)
-.++.++.++-...|. .+..+++.+.-++....+-. -.+++..- .+....++..+.+..-
T Consensus 700 PaiLSvFgDIAlaiga-----~F~~YL~~im~L~qqas~~~------p~~~~~~~---------~dy~~~~~~~v~~ayV 759 (858)
T COG5215 700 PAILSVFGDIALAIGA-----NFESYLDMIMMLFQQASELD------PHSDEVYV---------DDYRKNAVQLVNCAYV 759 (858)
T ss_pred hHHHHHHHHHHHHHhh-----hHHHHHHHHHHHHHHHhccC------CCCCceeH---------HHHHHHHHHHHHHHHH
Confidence 7889999998888773 45667777666665543210 00111111 1122344555555444
Q ss_pred HHHHHh---hhchhhhHHHHHHhHhhhhcCCC--CHHHHHHHHHHHHHHHHHhhhh
Q 001442 828 TLIKTF---KAAFLPFFDELSSYLTPMWGKDK--TAEERRIAICIFDDVAEQCREA 878 (1076)
Q Consensus 828 ~l~~~~---~~~~~~~~~~l~~~l~~~l~~~~--~~~~r~~al~~l~~l~~~~~~~ 878 (1076)
.+.... .....||+..+...+.-.. .+. +......+++++++++..+|..
T Consensus 760 gI~~~~~nr~~~v~Pyv~sif~~i~~ia-eDp~~se~~traalGLigDla~mfpkg 814 (858)
T COG5215 760 GIGDSSKNRVRSVLPYVISIFHKIGMIA-EDPNGSEAHTRAALGLIGDLAGMFPKG 814 (858)
T ss_pred HhhhhhhhhHHHhhhHHHHHHHHHHHhh-cCCccchhHHHHHHHHHHHHHHhCCCc
Confidence 444333 3456677777766554333 232 2333457899999999998764
No 5
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.1e-36 Score=345.11 Aligned_cols=826 Identities=18% Similarity=0.228 Sum_probs=561.7
Q ss_pred CCCHHHHHHHHHHHHHhcccCCCCcccCCCHhHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhcccCCC---Ccchh
Q 001442 68 SPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPEN---GWPEL 144 (1076)
Q Consensus 68 ~~~~~~R~~a~v~Lk~~i~~~~~~~w~~l~~~~~~~lk~~Ll~~l~~~~~~~vr~~~~~~i~~ia~~~~~~~---~w~~l 144 (1076)
+++.++|.-|--.+.+..... + +...|.+.+....++.+|..++....++....|+.= .-..+
T Consensus 15 spDn~vr~~Ae~~l~~~~~~~--------~------~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e~~~si 80 (1075)
T KOG2171|consen 15 SPDNEVRRQAEEALETLAKTE--------P------LLPALAHILATSADPQVRQLAAVLLRKLLTKHWSRLSAEVQQSI 80 (1075)
T ss_pred CCCchHHHHHHHHHHHhhccc--------c------hHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhcCCHHHHHHH
Confidence 566678999988887664332 1 445666777777899999999888877776543310 11224
Q ss_pred HHHHHHhhcCC-CHHHHHHHHHHHHHHHHHHHHhhCCcchHhHHhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHcc
Q 001442 145 LPFMFQCVSSD-SVKLQESAFLIFAQLIINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGT 223 (1076)
Q Consensus 145 l~~l~~~~~~~-~~~~r~~al~~L~~l~~~~~~~l~~~~~~~~~~~l~p~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~ 223 (1076)
...|+.++.++ .+.+|+.-..+++.+....+ ..-+|.+++.++++.+++++..|+.++.+|..+.+.
T Consensus 81 ks~lL~~~~~E~~~~vr~k~~dviAeia~~~l------------~e~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~ 148 (1075)
T KOG2171|consen 81 KSSLLEIIQSETEPSVRHKLADVIAEIARNDL------------PEKWPELLQFLFQSTKSPNPSLRESALLILSSLPET 148 (1075)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHhcc------------ccchHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhh
Confidence 45566666554 46888888888877643322 125899999999999999999999999999999999
Q ss_pred CcHHHHHhHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHhhcccchhhccchhhHHHHHHHHHHhhcCCCCCccccC
Q 001442 224 EPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHS 303 (1076)
Q Consensus 224 ~~~~~~~~l~~l~~~l~~~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~dd~~~~~ 303 (1076)
.+..+.+|+..+...+.+.+.+++ ..+|..|+..+..++......+..++++ ..++|.++..+.+..++.
T Consensus 149 ~~~~~~~~~~~l~~lf~q~~~d~s--~~vr~~a~rA~~a~~~~~~~~~~~~~~~----~~llP~~l~vl~~~i~~~---- 218 (1075)
T KOG2171|consen 149 FGNTLQPHLDDLLRLFSQTMTDPS--SPVRVAAVRALGAFAEYLENNKSEVDKF----RDLLPSLLNVLQEVIQDG---- 218 (1075)
T ss_pred hccccchhHHHHHHHHHHhccCCc--chHHHHHHHHHHHHHHHhccchHHHHHH----HHHhHHHHHHhHhhhhcc----
Confidence 999999999999999999997654 3399999999999988532223333333 445555544444322110
Q ss_pred CCCCCcccCCCCchhhHHHHHHHHHHHcCCCcchHHHHHHH---HHhhcCC--ChhHHHHHHHHHHHHHhhcHHHH----
Q 001442 304 AETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQL---PAYLAAP--EWQKHHAALIALAQIAEGCAKVM---- 374 (1076)
Q Consensus 304 ~~~e~~d~~e~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l---~~~l~~~--~~~~r~aal~~l~~l~~~~~~~~---- 374 (1076)
+......+.++|..++...| +-+-|.+...+ .+...+. +...|+.|+..+..++++.+...
T Consensus 219 ---------d~~~a~~~l~~l~El~e~~p-k~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~ 288 (1075)
T KOG2171|consen 219 ---------DDDAAKSALEALIELLESEP-KLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLA 288 (1075)
T ss_pred ---------chHHHHHHHHHHHHHHhhch-HHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhch
Confidence 00012234444455554443 22223222222 2222222 34566666666655555422100
Q ss_pred ------------------------------------------------------HHhHHHHHHHHHhhCCCCChhHHHHH
Q 001442 375 ------------------------------------------------------VKNLEQVLSMVLNSFRDPHPRVRWAA 400 (1076)
Q Consensus 375 ------------------------------------------------------~~~l~~i~~~l~~~l~d~~~~vr~~a 400 (1076)
+..++.+++.+...+.++++.-|.|+
T Consensus 289 ~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~Aa 368 (1075)
T KOG2171|consen 289 LLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAA 368 (1075)
T ss_pred hhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHH
Confidence 12244556666777788889999999
Q ss_pred HHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcC-ch
Q 001442 401 INAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNG-KQ 479 (1076)
Q Consensus 401 ~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~aL~~l~~~~~~~~l~~~l~~ll~~l~~~l~~~-~~ 479 (1076)
+.+|+.+++.++..+ ...++.+++.+++.|.| ++|+||.+||.|++.+..++.++.-..|.+.+.+.|...++++ +.
T Consensus 369 L~Als~i~EGc~~~m-~~~l~~Il~~Vl~~l~D-phprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~ 446 (1075)
T KOG2171|consen 369 LLALSVIAEGCSDVM-IGNLPKILPIVLNGLND-PHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNV 446 (1075)
T ss_pred HHHHHHHHcccHHHH-HHHHHHHHHHHHhhcCC-CCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCch
Confidence 999999999998877 67999999999999999 9999999999999999999988754455566667888888776 46
Q ss_pred hHHHHHHHHHHHHHH-HhHhhHHhhHhhhHHHHHHHHhccCCchhhhhHHHHHHHHHHHHHHhchhhhhhhHHHHHHHHH
Q 001442 480 MVQEGALTALASVAD-SSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLM 558 (1076)
Q Consensus 480 ~v~~~al~ai~~l~~-~~~~~~~~~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~g~~~~~~~~~~ii~~l~ 558 (1076)
+|+..+..++-.+.. +.++.+.||++.+|..++..+.. +....++..++.+||.++.+.+ +.|.||.+.+|+.+.
T Consensus 447 rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~---~~~~~v~e~vvtaIasvA~AA~-~~F~pY~d~~Mp~L~ 522 (1075)
T KOG2171|consen 447 RVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQ---SSKPYVQEQAVTAIASVADAAQ-EKFIPYFDRLMPLLK 522 (1075)
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhc---CCchhHHHHHHHHHHHHHHHHh-hhhHhHHHHHHHHHH
Confidence 888888777766655 55678899999999966665553 3456789999999999999999 789999999999999
Q ss_pred HHh-cCCCCCCChhhHHHHHHHHHHHHHhc-cCcccchhhhhHHHHHhccCCCCccccCCCCCccccCCCCcccchhhcC
Q 001442 559 SLQ-GSQMETDDPTTSYMLQAWARLCKCLG-QDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLG 636 (1076)
Q Consensus 559 ~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~l~~i~~~ll~~~~~~~~~~~~~~d~d~~~~~~d~~~~~~~~~~ 636 (1076)
+.. +..-+..+.+|.-.+.|++-++.+.| +.|.|+-..++..+...-..+. +++|.
T Consensus 523 ~~L~n~~~~d~r~LrgktmEcisli~~AVGke~F~~~a~eliqll~~~~~~~~----------------~~dd~------ 580 (1075)
T KOG2171|consen 523 NFLQNADDKDLRELRGKTMECLSLIARAVGKEKFLPLAEELIQLLLELQGSDQ----------------DDDDP------ 580 (1075)
T ss_pred HHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhhhhHhHHHHHHHHHhhcccch----------------hhccc------
Confidence 954 43323445688888999999999999 5699999999998876541100 11111
Q ss_pred CceeeecchhHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHhhhccccc-----------------C---------C--
Q 001442 637 DKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFY-----------------F---------H-- 688 (1076)
Q Consensus 637 ~~~~~v~~~~~~~k~~A~~~l~~i~~~~~~~~~p~l~~~~~~l~~~l~~~-----------------~---------~-- 688 (1076)
.++.-+..++.+++.+|.+|.||++.+++.+.+-.+-. . .
T Consensus 581 ------------~~sy~~~~warmc~ilg~~F~p~L~~Vmppl~~ta~~~p~~~~~d~~d~e~~~~~~~~e~~~~~~~e~ 648 (1075)
T KOG2171|consen 581 ------------LRSYMIAFWARMCRILGDDFAPFLPVVMPPLLKTARLDPDVALSDEEDEEEEQDLDGWEVVELGDKEN 648 (1075)
T ss_pred ------------cHHHHHHHHHHHHHHhchhhHhHHHHHhHHHHHhhccCCcccCcCchhhhhccccccchhhccCCcee
Confidence 12445667899999999999999999999887654210 0 0
Q ss_pred HHH-------HHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHh
Q 001442 689 EEV-------RKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVEALHKEPDTEICASMLDSLNECIQIS 761 (1076)
Q Consensus 689 ~~v-------r~~a~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~l~~l~~~i~~~ 761 (1076)
-.| +..|+.+|+.+..-.+.++. +++.+.+...+| .++......+|.++++++-.++...
T Consensus 649 ~~I~Tsvl~eK~~A~~~Lv~~a~~lk~~F~---------pYve~v~~l~v~----~l~f~fhdgVR~aa~~~~p~ll~~~ 715 (1075)
T KOG2171|consen 649 IGIRTSVLDEKETACEALGEYAKELKEAFA---------PYVEQVVELMVP----LLKFYFHDGVRKAAAESMPQLLTCA 715 (1075)
T ss_pred eeeeehhHHHHHHHHHHHHHHHHhhhhhhh---------hHHHHHHHHHHH----HHHhhhhhHHHHHHHHHHHHHHHHH
Confidence 112 34566666655544433222 234444443333 3333334567777777776666543
Q ss_pred CC--CCCHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcCCCCChHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhchh-
Q 001442 762 GP--LLDEGQVRSIVDEIKQVITASSSRKRERAERAKAEDFDAEESELIKEENEQEEEVFDQVGEILGTLIKTFKAAFL- 838 (1076)
Q Consensus 762 g~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ed~d~~~~~~~~e~~e~~~~~~~~~~~~l~~l~~~~~~~~~- 838 (1076)
-. ...+..+..+...+.+.+.+.+. .|.+.++...+.+.++..++.+|...+
T Consensus 716 ~~A~~~~p~~l~~l~~~~~~~l~~~l~-------------------------~E~e~~vl~~vl~~f~~~i~~~G~~~L~ 770 (1075)
T KOG2171|consen 716 LKACQGGPEYLKQLWEAIRPALIKALE-------------------------EEPETEVLSEILESFAECIEVMGDNCLN 770 (1075)
T ss_pred HHHhccChHHHHHHHHHHHHHHHHHhh-------------------------cCCcHHHHHHHHHHHHHHHHhcCcccCC
Confidence 21 12344555554444444443321 123355666777777878888875432
Q ss_pred -hhHHHHHHhHhhh----hc-----C------CCCHH-----------HHHHHHHHHHHHHHHhhhhhHhhHHhHHHHHH
Q 001442 839 -PFFDELSSYLTPM----WG-----K------DKTAE-----------ERRIAICIFDDVAEQCREAALKYYETYLPFLL 891 (1076)
Q Consensus 839 -~~~~~l~~~l~~~----l~-----~------~~~~~-----------~r~~al~~l~~l~~~~~~~~~~~~~~ll~~l~ 891 (1076)
+.+..+...+... .+ + +.+.+ .-..+..++..+++..+..+.|++..+.|.++
T Consensus 771 ~~~~~~~~~~~~~~~l~~~~~~~~r~~~~~eed~d~~eee~~~e~d~~ll~~i~~i~~~l~k~~k~~f~p~f~~~~p~iv 850 (1075)
T KOG2171|consen 771 EDGLEALLGGLLAQLLQHFKRMQDRQEEDDEEDDDIEEEEDLDEQDAYLLDAISDILAALAKALKGSFLPFFENFLPLIV 850 (1075)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHH
Confidence 2333322222111 10 0 01111 11234567777888888899999999999999
Q ss_pred hhccCCChhHHhhhhHHHHHHHhhcCCCchHHHHHHHHHHHHhhcCCCCCChhhhhHHHHHHHHHHHHHhhcCCCC-C-H
Q 001442 892 EACNDENQDVRQAAVYGLGVCAEFGGSVVKPLVGEALSRLNVVIRHPNALQPENLMAYDNAVSALGKICQFHRDSI-D-A 969 (1076)
Q Consensus 892 ~~l~~~~~~vr~~a~~~lg~l~~~~~~~~~~~~~~il~~L~~~l~~~~~~~~~~~~~~~na~~al~~i~~~~~~~~-~-~ 969 (1076)
+.+.+..+.-|+.|.-+++.+++++++...+|....++.+...+.++ +.++|+||+..+|-++.+.+... + .
T Consensus 851 ~~l~~~~~~~r~~av~~~~d~ie~~~~a~~~~~~~~~p~~~~~~~d~------~pEVRqaAsYGiGvlaq~~g~~y~~v~ 924 (1075)
T KOG2171|consen 851 KLLKSKKTVARQWAVCIFDDLIEGCGEASAKYKERFLPLVLEALQDS------DPEVRQAAAYGMGVLAQFGGEDYAPVC 924 (1075)
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHcCCC------CHHHHHHHHHHHHHHHHHcCcchHHHH
Confidence 99998877779999999999999999998899999999999998765 57999999999999999998874 2 4
Q ss_pred hhHHHHHHhhC-CCCCcHHH----HHHHHHHHHHHHhhcCCcccCcCcCchhhHHHHHHHHhcCC
Q 001442 970 AQVVPAWLNCL-PIKGDLIE----AKIVHEQLCSMVERSDSDLLGPNHQYLPKIVSVFAEILCGK 1029 (1076)
Q Consensus 970 ~~~l~~~l~~l-p~~~d~~e----~~~~~~~l~~li~~~~~~~~~~~~~~l~~i~~~~~~~l~~~ 1029 (1076)
...+|.+...+ |...-.++ .+++.+++++++. .+|..++ +++++..|...|+-+
T Consensus 925 ~~~l~~L~~~iq~~~ar~Ee~~~ateNa~gaiaki~~-~~~~~i~-----vdqvl~~~l~~LPl~ 983 (1075)
T KOG2171|consen 925 SEALPLLVQVLQPPLARTEENRRATENAIGAIAKILL-FNPNRIP-----VDQVLPAWLSWLPLK 983 (1075)
T ss_pred HHHHHHHHHHHcChhhhhHHHhHHHHHHHHHHHHHHH-hCCccCc-----HHHHHHHHHHhCCCc
Confidence 55666666654 11111233 4577788889985 4455554 789999999998743
No 6
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=100.00 E-value=2.9e-32 Score=298.11 Aligned_cols=929 Identities=15% Similarity=0.196 Sum_probs=587.0
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHcc---CCCHHHHHHHHHHHHHhcccCCCCcccCCCH
Q 001442 22 APFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQR---SPHPEARAMAAVLLRKLLTRDDSFLWPRLSL 98 (1076)
Q Consensus 22 ~~l~~lL~~~~s~d~~~r~~Ae~~L~~~~~~~p~~~~~~L~~il~~---~~~~~~R~~a~v~Lk~~i~~~~~~~w~~l~~ 98 (1076)
.-+.-+|+.+-+.+.+++..|-+++.-+..+=|+.-+..+.+-|++ +.....|..+++-||..+..-....-..+.+
T Consensus 47 kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~le~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~ 126 (1233)
T KOG1824|consen 47 KVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQLETIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAA 126 (1233)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCcccccccc
Confidence 3445566666778899999999999766554444445666666654 5678899999999999998753222335677
Q ss_pred hHHHHHHHHHHHHHhh-cchhhHHHHHHHHHHHHHhcccCCCCcch----hHHHHHHhhcCCCHHHHHHHHHHHHHHHHH
Q 001442 99 HTQSSLKSMLLQSIQL-ESAKSISKKLCDTVSELASNILPENGWPE----LLPFMFQCVSSDSVKLQESAFLIFAQLIIN 173 (1076)
Q Consensus 99 ~~~~~lk~~Ll~~l~~-~~~~~vr~~~~~~i~~ia~~~~~~~~w~~----ll~~l~~~~~~~~~~~r~~al~~L~~l~~~ 173 (1076)
.....+...+.+.+.. +....++-..+++++.+..... .-.|+ ++..++..+.++...+|+.+..+|+.+...
T Consensus 127 tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g--~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~ 204 (1233)
T KOG1824|consen 127 TVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFG--TLLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASS 204 (1233)
T ss_pred HHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhc--ccCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHh
Confidence 7777788888877754 5566688788888877766432 23344 455556666788889999999999887433
Q ss_pred HHHhhCCcchHhHHhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccCcHHHHHhHHHHHHHHHHHhcC-CCcchhH
Q 001442 174 FIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEA-ESLEEGT 252 (1076)
Q Consensus 174 ~~~~l~~~~~~~~~~~l~p~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~l~~~~~~-~~~~~~~ 252 (1076)
. ....|..++..+++.|.. ..+.......++++..++...+..+..|+..+++++.+.+.. ...++++
T Consensus 205 ~--------~~~ly~~li~~Ll~~L~~---~~q~~~~rt~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~~~~e~~dDEL 273 (1233)
T KOG1824|consen 205 C--------NRDLYVELIEHLLKGLSN---RTQMSATRTYIQCLAAICRQAGHRFGSHLDKIVPLVADYCNKIEEDDDEL 273 (1233)
T ss_pred c--------CHHHHHHHHHHHHhccCC---CCchHHHHHHHHHHHHHHHHhcchhhcccchhhHHHHHHhcccccCcHHH
Confidence 2 144566666666665543 345667778899999999999999999999999998887732 2357889
Q ss_pred HHHHHHHHHHHHHhhcccchhhccchhhHHHHHHHHHHhhcCCC-------CCc-cccCCCC-C--------CcccCCCC
Q 001442 253 RHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIE-------DDP-LWHSAET-E--------DEDAGESS 315 (1076)
Q Consensus 253 r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~-------dd~-~~~~~~~-e--------~~d~~e~~ 315 (1076)
|+.+++.+..+.. +.| +...+|++.++..++.++.+.- ||+ ....+|+ | |+||..|-
T Consensus 274 rE~~lQale~fl~---rcp---~ei~p~~pei~~l~l~yisYDPNy~yd~~eDed~~~~ed~eDde~~deYsDDeD~SWk 347 (1233)
T KOG1824|consen 274 REYCLQALESFLR---RCP---KEILPHVPEIINLCLSYISYDPNYNYDTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWK 347 (1233)
T ss_pred HHHHHHHHHHHHH---hCh---hhhcccchHHHHHHHHHhccCCCCCCCCccchhhhhhhccccchhccccccccchhHH
Confidence 9999999999998 566 3466889999999999988531 111 1111111 1 11222244
Q ss_pred chhhHHHHHHHHHHHcCCCcchHHHHHH----HHHhhcCCChhHHHHHHHHHHHHHh------------------hcH--
Q 001442 316 NYSVGQECLDRLAIALGGNTIVPVASEQ----LPAYLAAPEWQKHHAALIALAQIAE------------------GCA-- 371 (1076)
Q Consensus 316 ~~~~a~~~l~~l~~~~~~~~~~~~l~~~----l~~~l~~~~~~~r~aal~~l~~l~~------------------~~~-- 371 (1076)
+|++|++|+..+...- .+.+|.+.+. +...+++...++|--.+.++-.+.. |.+
T Consensus 348 VRRaAaKcl~a~IsSR--~E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~~~~~~~d~d~~e~~g~~s~ 425 (1233)
T KOG1824|consen 348 VRRAAAKCLEAVISSR--LEMLPDFYQTLGPALISRFKEREENVKADVFHAYIALLKQTRPVIEVLADNDAMEQGGTPSD 425 (1233)
T ss_pred HHHHHHHHHHHHHhcc--HHHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCcccccCchhhhccCCccc
Confidence 5677888887766443 2334433332 3333344444444433333333221 112
Q ss_pred -HHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCC-ChhHHHHHHHHHHH
Q 001442 372 -KVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQ-NPRVQAHAASAVLN 449 (1076)
Q Consensus 372 -~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~-~~~v~~~a~~aL~~ 449 (1076)
..+....+.++..|-+.+++.+-.-|..++..|..+...+++.. .++...++|.+...|.|.+ ....+..+...+..
T Consensus 426 ~~~L~~~~~~iVkai~~qlr~ks~kt~~~cf~lL~eli~~lp~~l-~~~~~slvpgI~~~l~DkSsss~~ki~~L~fl~~ 504 (1233)
T KOG1824|consen 426 LSMLSDQVPLIVKAIQKQLREKSVKTRQGCFLLLTELINVLPGAL-AQHIPSLVPGIIYSLNDKSSSSNLKIDALVFLYS 504 (1233)
T ss_pred hHHHHhhhHHHHHHHHHHHhhccccchhhHHHHHHHHHHhCcchh-hhcccccchhhhhhcCCccchHHHHHHHHHHHHH
Confidence 23445667788888888887777788889999999988877666 7899999999999999832 23455667777777
Q ss_pred hhhcCCcccccCchHHHHHHHHHHhhc--------------------------------------------------Cch
Q 001442 450 FSENCTPEILTPYLDGIVSKLLVLLQN--------------------------------------------------GKQ 479 (1076)
Q Consensus 450 l~~~~~~~~l~~~l~~ll~~l~~~l~~--------------------------------------------------~~~ 479 (1076)
.+...+++.+.|+++.+.+.+.....+ .+.
T Consensus 505 ~L~s~~p~~fhp~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvirpl~~~~~~d~~~~v~~m~~~tl~rL~a~d~Dq 584 (1233)
T KOG1824|consen 505 ALISHPPEVFHPHLSALSPPVVAAVGDPFYKISAEALLVCQQLVKVIRPLQPPSSFDASPYVKTMYDCTLQRLKATDSDQ 584 (1233)
T ss_pred HHhcCChhhcccchhhhhhHHHHHhcCchHhhhHHHHHHHHHHHHHhcccCCCccCCCChhHHHHHHHHHHHHhcccccH
Confidence 766666666666666665555443322 267
Q ss_pred hHHHHHHHHHHHHHHHhHhhHHhhHhhhHHHHHHHHhccCCchhhhhHHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHH
Q 001442 480 MVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMS 559 (1076)
Q Consensus 480 ~v~~~al~ai~~l~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~g~~~~~~~~~~ii~~l~~ 559 (1076)
+||+.+++|+|.++...|+.....++.++|.+.+.+++. ..|-.|+.+++.|+.+.-.-...|.+.++++.+..
T Consensus 585 eVkeraIscmgq~i~~fgD~l~~eL~~~L~il~eRl~nE------iTRl~AvkAlt~Ia~S~l~i~l~~~l~~il~~l~~ 658 (1233)
T KOG1824|consen 585 EVKERAISCMGQIIANFGDFLGNELPRTLPILLERLGNE------ITRLTAVKALTLIAMSPLDIDLSPVLTEILPELAS 658 (1233)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhch------hHHHHHHHHHHHHHhccceeehhhhHHHHHHHHHH
Confidence 899999999999999999888889999999999988753 34778899999998764322344666666665555
Q ss_pred HhcCCCCCCChhhHHHHHHHHHHHHHhccCcccch-hhhhHHHHHhccCCCCccccCCCCCccccCCCCcccch-----h
Q 001442 560 LQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYM-SVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMET-----I 633 (1076)
Q Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l-~~i~~~ll~~~~~~~~~~~~~~d~d~~~~~~d~~~~~~-----~ 633 (1076)
.... ..+..+...+.++..+.+.++..+.+++ ..++..+...+.. .+..+. ....+. .
T Consensus 659 flrK---~~r~lr~~~l~a~~~L~~~~~~~~~~~~~e~vL~el~~Lise-sdlhvt------------~~a~~~L~tl~~ 722 (1233)
T KOG1824|consen 659 FLRK---NQRALRLATLTALDKLVKNYSDSIPAELLEAVLVELPPLISE-SDLHVT------------QLAVAFLTTLAI 722 (1233)
T ss_pred HHHH---HHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhhhH-HHHHHH------------HHHHHHHHHHHh
Confidence 2211 1234667777888888888888777655 2233333322210 000000 000000 0
Q ss_pred hcCCceeeecchhHHHHH-------------HHHHHHHHHHHHhhhcccccHHHHHHH----------------------
Q 001442 634 TLGDKRIGIKTSVLEEKA-------------TACNMLCCYADELKEGFFPWIDQVAPT---------------------- 678 (1076)
Q Consensus 634 ~~~~~~~~v~~~~~~~k~-------------~A~~~l~~i~~~~~~~~~p~l~~~~~~---------------------- 678 (1076)
+.......+++..+++-. .++..+...+...+..=.+|. ..+..
T Consensus 723 ~~ps~l~~~~~~iL~~ii~ll~Spllqg~al~~~l~~f~alV~t~~~~l~y~-~l~s~lt~PV~~~~~~~l~kqa~~siA 801 (1233)
T KOG1824|consen 723 IQPSSLLKISNPILDEIIRLLRSPLLQGGALSALLLFFQALVITKEPDLDYI-SLLSLLTAPVYEQVTDGLHKQAYYSIA 801 (1233)
T ss_pred cccHHHHHHhhhhHHHHHHHhhCccccchHHHHHHHHHHHHHhcCCCCccHH-HHHHHHcCCcccccccchhHHHHHHHH
Confidence 000001112222222100 001000000000111001111 00000
Q ss_pred ------------------------------------------------------------hhhcccccCCHHHHHHHHHH
Q 001442 679 ------------------------------------------------------------LVPLLKFYFHEEVRKAAVSA 698 (1076)
Q Consensus 679 ------------------------------------------------------------l~~~l~~~~~~~vr~~a~~~ 698 (1076)
+++.++. .+++|++||..+
T Consensus 802 ~cvA~Lt~~~~~~s~s~a~kl~~~~~s~~s~~~ikvfa~LslGElgr~~~~s~~~e~~~~iieaf~s-p~edvksAAs~A 880 (1233)
T KOG1824|consen 802 KCVAALTCACPQKSKSLATKLIQDLQSPKSSDSIKVFALLSLGELGRRKDLSPQNELKDTIIEAFNS-PSEDVKSAASYA 880 (1233)
T ss_pred HHHHHHHHhccccchhHHHHHHHHHhCCCCchhHHHHHHhhhhhhccCCCCCcchhhHHHHHHHcCC-ChHHHHHHHHHH
Confidence 1111110 122222222222
Q ss_pred HHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Q 001442 699 MPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVEALHKEPDTEICASMLDSLNECIQISGPLLDEGQVRSIVDEIK 778 (1076)
Q Consensus 699 l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~l~~l~~~i~~~g~~~~~~~~~~~~~~l~ 778 (1076)
||.+.. |+ .+..+|.+++.+..++... .-.+.++.+++..... +.+.+.++.++
T Consensus 881 LGsl~v------------gn--------l~~yLpfil~qi~sqpk~Q--yLLLhSlkevi~~~sv----d~~~~~v~~IW 934 (1233)
T KOG1824|consen 881 LGSLAV------------GN--------LPKYLPFILEQIESQPKRQ--YLLLHSLKEVIVSASV----DGLKPYVEKIW 934 (1233)
T ss_pred hhhhhc------------Cc--------hHhHHHHHHHHHhcchHhH--HHHHHHHHHHHHHhcc----chhhhhHHHHH
Confidence 222211 11 1123344444444443332 2256666666654332 24445555666
Q ss_pred HHHHHHHHhHHHHHHhhcCCCCChHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHhHhhhhcCCCCH
Q 001442 779 QVITASSSRKRERAERAKAEDFDAEESELIKEENEQEEEVFDQVGEILGTLIKTFKAAFLPFFDELSSYLTPMWGKDKTA 858 (1076)
Q Consensus 779 ~~l~~~~~~~~~~~~~~~~ed~d~~~~~~~~e~~e~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~ 858 (1076)
.+|-+..++ .++..+..+++|+|.++-.-++...|-++.. + .+..+
T Consensus 935 ~lL~k~cE~--------------------------~eegtR~vvAECLGkL~l~epesLlpkL~~~-------~-~S~a~ 980 (1233)
T KOG1824|consen 935 ALLFKHCEC--------------------------AEEGTRNVVAECLGKLVLIEPESLLPKLKLL-------L-RSEAS 980 (1233)
T ss_pred HHHHHhccc--------------------------chhhhHHHHHHHhhhHHhCChHHHHHHHHHH-------h-cCCCc
Confidence 665554321 1245688899999999988877765555443 3 45667
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHhhHHhHHHHHHhhccCCChhHHhhhhHHHHHHHhhcCCCchHHHHHHHHHHHHhhcCC
Q 001442 859 EERRIAICIFDDVAEQCREAALKYYETYLPFLLEACNDENQDVRQAAVYGLGVCAEFGGSVVKPLVGEALSRLNVVIRHP 938 (1076)
Q Consensus 859 ~~r~~al~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~vr~~a~~~lg~l~~~~~~~~~~~~~~il~~L~~~l~~~ 938 (1076)
..|..++.++...+.--++.+.++..+.+.-+++.++|+|..||+.|.-.+...+.+-+.-+...++++||.|++--.-.
T Consensus 981 ~~rs~vvsavKfsisd~p~~id~~lk~~ig~fl~~~~dpDl~VrrvaLvv~nSaahNKpslIrDllpeLLp~Ly~eTkvr 1060 (1233)
T KOG1824|consen 981 NTRSSVVSAVKFSISDQPQPIDPLLKQQIGDFLKLLRDPDLEVRRVALVVLNSAAHNKPSLIRDLLPELLPLLYSETKVR 1060 (1233)
T ss_pred chhhhhhheeeeeecCCCCccCHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHccCHhHHHHHHHHHHHHHHHhhhhh
Confidence 78988888888877777778888999999999999999999999999999999999999989999999999998744321
Q ss_pred ------------CCCChhhhhHHHHHHHHHHHHHhhcCCCCCHhhHHHHHHhhCCCCCcHHHHHHHHHHHHHHHhhcCCc
Q 001442 939 ------------NALQPENLMAYDNAVSALGKICQFHRDSIDAAQVVPAWLNCLPIKGDLIEAKIVHEQLCSMVERSDSD 1006 (1076)
Q Consensus 939 ------------~~~~~~~~~~~~na~~al~~i~~~~~~~~~~~~~l~~~l~~lp~~~d~~e~~~~~~~l~~li~~~~~~ 1006 (1076)
++..|+....|+.|-.|++.++..+-+.+++.+|+...-..|... ..-+.-.|..+.++...-|..
T Consensus 1061 kelIreVeMGPFKH~VDdgLd~RKaaFEcmytLLdscld~~dit~Fl~~~~~GL~Dh--ydiKmlt~l~l~rLa~lcPs~ 1138 (1233)
T KOG1824|consen 1061 KELIREVEMGPFKHTVDDGLDLRKAAFECMYTLLDSCLDRLDITEFLNHVEDGLEDH--YDIKMLTFLMLARLADLCPSA 1138 (1233)
T ss_pred HhhhhhhcccCccccccchHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHhhcchh--hHHHHHHHHHHHHHHhhCcHH
Confidence 123467889999999999999999988889999999777777432 345667888888888766555
Q ss_pred ccCcCcCchhhHHHHHHHHhcCC------CC---CCHHHHHHHHHHHHHHHhhCCh----hhHHHHHhcC
Q 001442 1007 LLGPNHQYLPKIVSVFAEILCGK------DL---ATEQTLSRIVNLLKQLQQTLPP----ATLASTWSSL 1063 (1076)
Q Consensus 1007 ~~~~~~~~l~~i~~~~~~~l~~~------~~---~~~~~~~~~~~~l~~l~~~~~~----~~~~~~~~~l 1063 (1076)
++. .++++++-+.....-+ +. ..+++++...+.+..+. ..|. +.|..+.++.
T Consensus 1139 Vlq----rlD~l~EpLr~t~~~k~k~~svKqE~ek~~eLkRSAlRav~~L~-~ip~v~~np~~~df~sqi 1203 (1233)
T KOG1824|consen 1139 VLQ----RLDRLVEPLRKTCTLKVKANSVKQEFEKQDELKRSALRAVAALL-TIPEVEKNPQFSDFESQI 1203 (1233)
T ss_pred HHH----HHHHHHHHHHHHhhcccccchHhHhHHHHHHHHHHHHHHHHHHh-cccccccChHHHHHHHHh
Confidence 555 6888888887777511 11 12467777777776662 2332 2266666554
No 7
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2e-30 Score=288.13 Aligned_cols=651 Identities=16% Similarity=0.205 Sum_probs=434.5
Q ss_pred CChHHHHHHHHHhcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHcc-CCCHHHHHHHHHHHHHhcccCCCCcccC--
Q 001442 19 PDSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQR-SPHPEARAMAAVLLRKLLTRDDSFLWPR-- 95 (1076)
Q Consensus 19 ~~~~~l~~lL~~~~s~d~~~r~~Ae~~L~~~~~~~p~~~~~~L~~il~~-~~~~~~R~~a~v~Lk~~i~~~~~~~w~~-- 95 (1076)
||.+.+.+++.++.++|++.|+.||++|+++.+ +|+ |+..|++|+.+ +.+..+||.|+++|||+|.+. |+.
T Consensus 1 md~~~l~~~~~~T~d~d~~~R~~AE~~L~q~~K-~pg-Fv~~lLqIi~~d~~~l~vrqaaaIYlKN~I~~~----W~~~~ 74 (1010)
T KOG1991|consen 1 MDLQSLLQIFRATIDSDAKERKAAEQQLNQLEK-QPG-FVSSLLQIIMDDGVPLPVRQAAAIYLKNKITKS----WSSHE 74 (1010)
T ss_pred CChHHHHHHHHHhcCCChHHHHHHHHHHHHhhc-CCc-HHHHHHHHHHccCCchhHHHHHHHHHHHHHHhc----CCccC
Confidence 688999999999999999999999999999999 687 78999999987 667788999999999999998 653
Q ss_pred -------CCHhHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhcccCCCCcchhHHHHHHhhcCCCHHHHHHHHHHHH
Q 001442 96 -------LSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFA 168 (1076)
Q Consensus 96 -------l~~~~~~~lk~~Ll~~l~~~~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~~~~~~~r~~al~~L~ 168 (1076)
+.++.|..+|.+++..+.. .+..+|.++..++..|...++| ++||++++.+...+++++....-+|+.+|.
T Consensus 75 ~~g~~~~I~e~dk~~irenIl~~iv~-~p~~iRvql~~~l~~Ii~~D~p-~~Wp~l~d~i~~~Lqs~~~~~vy~aLl~l~ 152 (1010)
T KOG1991|consen 75 APGRPFGIPEEDKAVIRENILETIVQ-VPELIRVQLTACLNTIIKADYP-EQWPGLLDKIKNLLQSQDANHVYGALLCLY 152 (1010)
T ss_pred CCCCcCCCChHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHHhcCCc-ccchhHHHHHHHHhcCcchhhHHHHHHHHH
Confidence 6789999999999999985 5888999999999999999999 899999999999999999999999999998
Q ss_pred HHHHH----------------------HH----HhhCCcc---------------------------hHhHHhhhHHHHH
Q 001442 169 QLIIN----------------------FI----QCLTSSA---------------------------DRDRFQDLLPLMM 195 (1076)
Q Consensus 169 ~l~~~----------------------~~----~~l~~~~---------------------------~~~~~~~l~p~~l 195 (1076)
.++.. +. +.+..++ ....|..++..++
T Consensus 153 qL~k~ye~k~~eeR~~l~~~v~~~fP~il~~~~~ll~~~s~~s~el~klIlKifks~~~~~LP~~L~~~~~f~~W~~l~l 232 (1010)
T KOG1991|consen 153 QLFKTYEWKKDEERQPLGEAVEELFPDILQIFNGLLSQESYQSVELQKLILKIFKSLIYYELPLELSAPETFTSWMELFL 232 (1010)
T ss_pred HHHHHHhhccccccccHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhCCHHhhCchhHHHHHHHHH
Confidence 88211 11 1111110 1122222222233
Q ss_pred HHHHHHHh----CCCHH---------HHHHHHHHHHHHHccCcH--------------HHHHhHHHHHHHHHHHhcC---
Q 001442 196 RTLTESLN----NGNEA---------TAQEALELLIELAGTEPR--------------FLRRQLVDVVGSMLQIAEA--- 245 (1076)
Q Consensus 196 ~~l~~~~~----~~~~~---------~~~~~~~~l~~l~~~~~~--------------~~~~~l~~l~~~l~~~~~~--- 245 (1076)
.++.+-+. .-|++ ..+.++..+.++.+++++ ++..+.+.+.+.+++++..
T Consensus 233 ~i~~rpvP~E~l~~d~e~R~~~~wwK~KKWa~~~L~Rlf~Ryg~~~~~~~~y~~Fa~~f~~n~~~~ile~~lk~l~~~~~ 312 (1010)
T KOG1991|consen 233 SILNRPVPVEVLSLDPEDRSSWPWWKCKKWALHILNRLFERYGSPSLVVPEYKEFAQMFLKNFAQGILEVFLKILEQWRQ 312 (1010)
T ss_pred HHHcCCCChhcccCChhhcccccchhhHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 32221110 11333 457789999988887642 2234555666666665521
Q ss_pred -CCcchhHHHHHHHHHHHHHHhhcccchhhccchhhHHHHH-HHHHHhhcCCCCC-ccccCCCCC------CcccCCCCc
Q 001442 246 -ESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLF-AILMSMLLDIEDD-PLWHSAETE------DEDAGESSN 316 (1076)
Q Consensus 246 -~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~l~-~~l~~~l~~~~dd-~~~~~~~~e------~~d~~e~~~ 316 (1076)
.-..+++-..++.++...++ ...+++.+.|++..++ .+++..|...++| ..|..++.| |--++..++
T Consensus 313 ~~yls~rvl~~~l~fl~~~Vs----~~~twkll~PHl~~ii~~vIFPlmc~~d~deelwe~DP~EYiR~~~Di~ed~~sp 388 (1010)
T KOG1991|consen 313 QLYLSDRVLYYLLNFLEQCVS----HASTWKLLKPHLQVIIQDVIFPLMCFNDEDEELWEEDPYEYIRKKFDIFEDGYSP 388 (1010)
T ss_pred cccCCHHHHHHHHHHHHHhcc----HHHHHHHhhhHHHHHHHHhhhhhcCCCcccHHHHhcCHHHHHHhcCchhcccCCC
Confidence 12456677777888877776 3456677778777655 4666777665543 457655433 111335567
Q ss_pred hhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhc--------CCChhHHHHHHHHHHHHHhhcHH--HHHHhHHH-HHHHH
Q 001442 317 YSVGQECLDRLAIALGGNTIVPVASEQLPAYLA--------APEWQKHHAALIALAQIAEGCAK--VMVKNLEQ-VLSMV 385 (1076)
Q Consensus 317 ~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~--------~~~~~~r~aal~~l~~l~~~~~~--~~~~~l~~-i~~~l 385 (1076)
..+|..++-.+++.-| +..+|.+++++.+.++ ..+++.+++|+.++|.+++-..+ .++..+.. +++.+
T Consensus 389 ~~Aa~~~l~~~~~KR~-ke~l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hV 467 (1010)
T KOG1991|consen 389 DTAALDFLTTLVSKRG-KETLPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHV 467 (1010)
T ss_pred cHHHHHHHHHHHHhcc-hhhhhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHh
Confidence 7788889999988887 7888888888887765 24688999999999999975432 34455554 46789
Q ss_pred HhhCCCCChhHHHHHHHHHHHhh-hhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCc--ccccCc
Q 001442 386 LNSFRDPHPRVRWAAINAIGQLS-TDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTP--EILTPY 462 (1076)
Q Consensus 386 ~~~l~d~~~~vr~~a~~~l~~l~-~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~aL~~l~~~~~~--~~l~~~ 462 (1076)
.+.++++-...|..|||.+++++ ..++. ...+..++....+++.+.++-.|+..|..||..|+.+... +.++++
T Consensus 468 fP~f~s~~g~Lrarac~vl~~~~~~df~d---~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~h 544 (1010)
T KOG1991|consen 468 FPEFQSPYGYLRARACWVLSQFSSIDFKD---PNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAH 544 (1010)
T ss_pred hHhhcCchhHHHHHHHHHHHHHHhccCCC---hHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhh
Confidence 99999999999999999999999 44543 3467788888888888337788999999999999988752 347899
Q ss_pred hHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHhHhhHHhhHhhhHHHHHHHHhcc--------CCchhhhh-HHHHHHH
Q 001442 463 LDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNA--------TDKSNRML-RAKSMEC 533 (1076)
Q Consensus 463 l~~ll~~l~~~l~~~~~~v~~~al~ai~~l~~~~~~~~~~~~~~i~~~L~~~l~~~--------~~~~~~~l-r~~a~~~ 533 (1076)
++.+|..|+.+.+....+. .-.++-.++...++++.||...+...|...+... .+.++..+ -...+.+
T Consensus 545 vp~~mq~lL~L~ne~End~---Lt~vme~iV~~fseElsPfA~eL~q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~T 621 (1010)
T KOG1991|consen 545 VPPIMQELLKLSNEVENDD---LTNVMEKIVCKFSEELSPFAVELCQNLAETFLKVLQTSEDEDESDDDKAIAASGILRT 621 (1010)
T ss_pred hhHHHHHHHHHHHhcchhH---HHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHH
Confidence 9999999999988776443 4566777888888899998888877776654431 11112211 1223344
Q ss_pred HHHHHHHhch--hh---hhhhHHHHHHHHHHH------------hcCCCCCCChhhHHHHHHHHHHHHHhccCcccchhh
Q 001442 534 ISLVGMAVGK--DK---FRDDAKQVMEVLMSL------------QGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSV 596 (1076)
Q Consensus 534 l~~i~~~~g~--~~---~~~~~~~ii~~l~~~------------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ 596 (1076)
+.++..++.. +. ..|-+-.++..++.. .++..--...+...+.+.|.-+.+++.+.--.|++.
T Consensus 622 i~Til~s~e~~p~vl~~le~~~l~vi~~iL~~~i~dfyeE~~ei~~~~t~~~~~Isp~mW~ll~li~e~~~~~~~dyf~d 701 (1010)
T KOG1991|consen 622 ISTILLSLENHPEVLKQLEPIVLPVIGFILKNDITDFYEELLEIVSSLTFLSKEISPIMWGLLELILEVFQDDGIDYFTD 701 (1010)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhhhcccCHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 4444444431 11 222233344433321 000000001133445555666666666666677777
Q ss_pred hhHHHHHhccCCCCccccCCCCCccccCCCCcccchhhcCCceeeecchhHHHHHHHHHHHHHHHHHhhhcccccHHHHH
Q 001442 597 VMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVA 676 (1076)
Q Consensus 597 i~~~ll~~~~~~~~~~~~~~d~d~~~~~~d~~~~~~~~~~~~~~~v~~~~~~~k~~A~~~l~~i~~~~~~~~~p~l~~~~ 676 (1076)
+++.+-+.+.++.+......+- .. --++.. .+.+.-.+..-.+.+.|++.+..++-+|++.+-.|++-.+
T Consensus 702 ~~~~l~N~vt~g~~~~~s~~~y-~~------il~~i~---~~~l~~e~~~D~d~~~a~kLle~iiL~~kg~~dq~iplf~ 771 (1010)
T KOG1991|consen 702 MMPALHNYVTYGTPSLLSNPDY-LQ------ILLEII---KKVLTSENGEDSDCESACKLLEVIILNCKGLLDQYIPLFL 771 (1010)
T ss_pred HHHHHhhheeeCchhhhccchH-HH------HHHHHH---HHHHcCCCCchHHHHHHHHHHHHHHHHhcCcHhhHhHHHH
Confidence 7777776665432211000000 00 000000 0000001111233467999999999999998888888877
Q ss_pred HHhhhcccc-cCCHHHHHHHHHH
Q 001442 677 PTLVPLLKF-YFHEEVRKAAVSA 698 (1076)
Q Consensus 677 ~~l~~~l~~-~~~~~vr~~a~~~ 698 (1076)
...+..+.. ......|..+.+.
T Consensus 772 ~~a~~~l~~~~e~s~~~~~~leV 794 (1010)
T KOG1991|consen 772 ELALSRLTREVETSELRVMLLEV 794 (1010)
T ss_pred HHHHHHHhccccchHHHHHHHHH
Confidence 776665543 2234556555554
No 8
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.8e-33 Score=291.93 Aligned_cols=638 Identities=17% Similarity=0.228 Sum_probs=432.2
Q ss_pred CCChhHHHHHHHHHHHHHhhcHHHHH-HhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHH
Q 001442 350 APEWQKHHAALIALAQIAEGCAKVMV-KNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALA 428 (1076)
Q Consensus 350 ~~~~~~r~aal~~l~~l~~~~~~~~~-~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~ 428 (1076)
+.+-..|.+|-+.|..=..+....+. .....+-..+++++.|+++.+|...-..+..++..-+ ...++.++|.|.
T Consensus 59 ~~d~~~Rs~aGLlLKNnvr~~~~~~~~~~~~yiKs~~l~~lgd~~~lIr~tvGivITTI~s~~~----~~~wpelLp~L~ 134 (885)
T KOG2023|consen 59 SEDVPTRSLAGLLLKNNVRGHYNSIPSEVLDYIKSECLHGLGDASPLIRATVGIVITTIASTGG----LQHWPELLPQLC 134 (885)
T ss_pred ccchhHHHHhhhhHhccccccccCCChHHHHHHHHHHHhhccCchHHHHhhhhheeeeeecccc----cccchhHHHHHH
Confidence 44455566555555443333222222 2344455688899999999999888777777664322 356799999999
Q ss_pred hhccCCCChhHHHHHHHHHHHhhhcCC----cccccCchHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHhHhhHHhhH
Q 001442 429 GAMDDFQNPRVQAHAASAVLNFSENCT----PEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYY 504 (1076)
Q Consensus 429 ~~l~~~~~~~v~~~a~~aL~~l~~~~~----~~~l~~~l~~ll~~l~~~l~~~~~~v~~~al~ai~~l~~~~~~~~~~~~ 504 (1076)
+.|.. ++...++.|+.||..+|+... .+.....+..++|+++...+++++.+|..|+.|+..++-.....+.-.+
T Consensus 135 ~~L~s-~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~i 213 (885)
T KOG2023|consen 135 ELLDS-PDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVHI 213 (885)
T ss_pred HHhcC-CcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHHH
Confidence 99998 888999999999999998754 2334457889999999999999999999999999999888887777777
Q ss_pred hhhHHHHHHHHhccCCchhhhhHHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHhcCCCCCCChhhHHHHHHHHHHHH
Q 001442 505 DAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCK 584 (1076)
Q Consensus 505 ~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~g~~~~~~~~~~ii~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ 584 (1076)
+.++..++..- ++++..+|.....++..+.. +.++++.|++..++++|+..... .++.+.-.+..+|..+|+
T Consensus 214 D~Fle~lFala----nD~~~eVRk~vC~alv~Lle-vr~dkl~phl~~IveyML~~tqd---~dE~VALEACEFwla~ae 285 (885)
T KOG2023|consen 214 DKFLEILFALA----NDEDPEVRKNVCRALVFLLE-VRPDKLVPHLDNIVEYMLQRTQD---VDENVALEACEFWLALAE 285 (885)
T ss_pred HHHHHHHHHHc----cCCCHHHHHHHHHHHHHHHH-hcHHhcccchHHHHHHHHHHccC---cchhHHHHHHHHHHHHhc
Confidence 77777777653 23445677766555555543 44589999999999999984332 345566677788888887
Q ss_pred H--hccCcccchhhhhHHHHHhccCCCC-cc----------ccC------------------C---CCCc-cccCCCCc-
Q 001442 585 C--LGQDFLPYMSVVMPPLLQSAQLKPD-VT----------ITS------------------A---DSDN-EIEDSDDD- 628 (1076)
Q Consensus 585 ~--~~~~~~~~l~~i~~~ll~~~~~~~~-~~----------~~~------------------~---d~d~-~~~~~d~~- 628 (1076)
. +++-+.||++.++|.+++.+.+... .. +-| + ++|+ |++++||+
T Consensus 286 qpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~ 365 (885)
T KOG2023|consen 286 QPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDA 365 (885)
T ss_pred CcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCccccccccccccccccccc
Confidence 5 4556899999999999999865211 00 000 0 0111 11111111
Q ss_pred --ccchhh------------cCCceeeecc---------hhHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHhhhcccc
Q 001442 629 --SMETIT------------LGDKRIGIKT---------SVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKF 685 (1076)
Q Consensus 629 --~~~~~~------------~~~~~~~v~~---------~~~~~k~~A~~~l~~i~~~~~~~~~p~l~~~~~~l~~~l~~ 685 (1076)
+|+... +++....+.- .....|++++.+||.||++|.+.|.||++++++++++++++
T Consensus 366 ~~dWNLRkCSAAaLDVLanvf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~D 445 (885)
T KOG2023|consen 366 FSDWNLRKCSAAALDVLANVFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDD 445 (885)
T ss_pred cccccHhhccHHHHHHHHHhhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhcc
Confidence 232210 1111111111 12234889999999999999999999999999999999998
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHhCCCC
Q 001442 686 YFHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVEALHKEPDTEICASMLDSLNECIQISGPLL 765 (1076)
Q Consensus 686 ~~~~~vr~~a~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~l~~l~~~i~~~g~~~ 765 (1076)
. .+-||+.++.+|+.....+.. .... +++..++..+++.+- |.+..|..+++.+++.+-...|+.+
T Consensus 446 K-kplVRsITCWTLsRys~wv~~--------~~~~----~~f~pvL~~ll~~ll-D~NK~VQEAAcsAfAtleE~A~~eL 511 (885)
T KOG2023|consen 446 K-KPLVRSITCWTLSRYSKWVVQ--------DSRD----EYFKPVLEGLLRRLL-DSNKKVQEAACSAFATLEEEAGEEL 511 (885)
T ss_pred C-ccceeeeeeeeHhhhhhhHhc--------CChH----hhhHHHHHHHHHHHh-cccHHHHHHHHHHHHHHHHhccchh
Confidence 6 789999999998876554321 2222 344444445555443 4578899999999999998888644
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhH--------HHHHHhhcCCCCCh---------HhhhhhhhhhhhHHHHHHHHHHHHHH
Q 001442 766 DEGQVRSIVDEIKQVITASSSRK--------RERAERAKAEDFDA---------EESELIKEENEQEEEVFDQVGEILGT 828 (1076)
Q Consensus 766 ~~~~~~~~~~~l~~~l~~~~~~~--------~~~~~~~~~ed~d~---------~~~~~~~e~~e~~~~~~~~~~~~l~~ 828 (1076)
-+ ++..+++.+...+.+.-.+- +...+..|. ..+. +-.+.|..-++.+.+++ ...+|+..
T Consensus 512 Vp-~l~~IL~~l~~af~kYQ~KNLlILYDAIgtlAdsvg~-~Ln~~~YiqiLmPPLi~KW~~lsd~DKdLf-PLLEClSs 588 (885)
T KOG2023|consen 512 VP-YLEYILDQLVFAFGKYQKKNLLILYDAIGTLADSVGH-ALNKPAYIQILMPPLIEKWELLSDSDKDLF-PLLECLSS 588 (885)
T ss_pred HH-HHHHHHHHHHHHHHHHhhcceehHHHHHHHHHHHHHH-hcCcHHHHHHhccHHHHHHHhcCcccchHH-HHHHHHHH
Confidence 33 55666666655554432110 000000110 1111 01112222233344443 57899999
Q ss_pred HHHHhhhchhhhHHHHHHhHhhhhc--------CCCCH----HHH---HHHHHHHHHHHHHhhhhhHhhH--HhHHHHHH
Q 001442 829 LIKTFKAAFLPFFDELSSYLTPMWG--------KDKTA----EER---RIAICIFDDVAEQCREAALKYY--ETYLPFLL 891 (1076)
Q Consensus 829 l~~~~~~~~~~~~~~l~~~l~~~l~--------~~~~~----~~r---~~al~~l~~l~~~~~~~~~~~~--~~ll~~l~ 891 (1076)
+++.+|..|.||.+.+....+..++ ...++ .+| ..++.+++.+++.+|.++.+.+ ..++..++
T Consensus 589 ia~AL~~gF~P~~~~Vy~Rc~~il~~t~q~~~~~~~~~~~~~pdkdfiI~sLDL~SGLaegLg~~ie~Lva~snl~~lll 668 (885)
T KOG2023|consen 589 IASALGVGFLPYAQPVYQRCFRILQKTLQLLAKVQQDPTVEAPDKDFIIVSLDLLSGLAEGLGSHIEPLVAQSNLLDLLL 668 (885)
T ss_pred HHHHHhccccccCHHHHHHHHHHHHHHHHHHHhccCCccccCCCcceEEEeHHHHhHHHHHhhhchHHHhhhccHHHHHH
Confidence 9999999999988776555444332 11111 122 3478899999999999888744 56889999
Q ss_pred hhccCCChhHHhhhhHHHHHHHhhcCCCchHHHHHHHHHHHHhhcCCCCCChhhhhHHHHHHHHHHHHHhhcCCCC--CH
Q 001442 892 EACNDENQDVRQAAVYGLGVCAEFGGSVVKPLVGEALSRLNVVIRHPNALQPENLMAYDNAVSALGKICQFHRDSI--DA 969 (1076)
Q Consensus 892 ~~l~~~~~~vr~~a~~~lg~l~~~~~~~~~~~~~~il~~L~~~l~~~~~~~~~~~~~~~na~~al~~i~~~~~~~~--~~ 969 (1076)
.|+.|+-|+||+.|+-.+|.+++.+.+.+.|+...+++.+-.-+.. ++..+..||++|+|.|....+... ++
T Consensus 669 ~C~~D~~peVRQS~FALLGDltk~c~~~v~p~~~~fl~~lg~Nl~~------~~isv~nNA~WAiGeia~k~g~~~~~~v 742 (885)
T KOG2023|consen 669 QCLQDEVPEVRQSAFALLGDLTKACFEHVIPNLADFLPILGANLNP------ENISVCNNAIWAIGEIALKMGLKMKQYV 742 (885)
T ss_pred HHhccCChHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHhhcCCh------hhchHHHHHHHHHHHHHHHhchhhhhHH
Confidence 9999999999999999999999999999999999999988754432 467899999999999999876654 34
Q ss_pred hhHHHHHHhhCCC-CCcHHHHHHHHHHHHHHHhhcCCcccCcCcCchhhHHHHHHHHhc
Q 001442 970 AQVVPAWLNCLPI-KGDLIEAKIVHEQLCSMVERSDSDLLGPNHQYLPKIVSVFAEILC 1027 (1076)
Q Consensus 970 ~~~l~~~l~~lp~-~~d~~e~~~~~~~l~~li~~~~~~~~~~~~~~l~~i~~~~~~~l~ 1027 (1076)
..++..++..+.. ..+..-.++..-++.+|- ..+|+.+.| |++..+.-++..+.
T Consensus 743 ~~vl~~L~~iin~~~~~~tllENtAITIGrLg-~~~Pe~vAp---~l~~f~~pWc~sl~ 797 (885)
T KOG2023|consen 743 SPVLEDLITIINRQNTPKTLLENTAITIGRLG-YICPEEVAP---HLDSFMRPWCTSLR 797 (885)
T ss_pred HHHHHHHHHHhcccCchHHHHHhhhhhhhhhh-ccCHHhcch---hHHHHHHHHHHHhc
Confidence 4444444443321 123333444444555655 456777776 89999999999886
No 9
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.2e-28 Score=263.41 Aligned_cols=753 Identities=17% Similarity=0.210 Sum_probs=530.0
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHccCcHHHHHhHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHhhcccchh--
Q 001442 196 RTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGM-- 273 (1076)
Q Consensus 196 ~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~-- 273 (1076)
+.+.. ..++|..++..+-.-|..+.+. .++.++..+..++.+.......|..|=-.|..-...+ .|..
T Consensus 5 ~~le~-tlSpD~n~~~~Ae~~l~~~~~~-------nf~~F~~~Ls~vl~n~~~~~~~R~~AGL~LKN~L~ak--d~~~k~ 74 (859)
T KOG1241|consen 5 ELLEK-TLSPDQNVRKRAEKQLEQAQSQ-------NFPQFLVLLSEVLANDNSSDVARMAAGLQLKNSLTAK--DPERKQ 74 (859)
T ss_pred HHHHH-HcCCCcchHHHHHHHHHHHHhc-------cHHHHHHHHHHHHhccCCcHHHHHHHhHHHhhhhccC--CHHHHH
Confidence 34444 3467888898888888877653 3566666666666666666777777644444332221 1110
Q ss_pred -----hccchh-hHHHHHHHHHHhhcCCCCCccccCCCCCCcccCCCCchhhHHHHHHHHHHHcCCCcchHHHHHHHHHh
Q 001442 274 -----MRKLPQ-FINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAY 347 (1076)
Q Consensus 274 -----~~~~~~-~~~~l~~~l~~~l~~~~dd~~~~~~~~e~~d~~e~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~ 347 (1076)
+-.++. .-+++=..++..|..+ +......|.+|+..++..--|...+|.+++.+...
T Consensus 75 ~~~qRWl~l~~e~reqVK~~il~tL~~~-----------------ep~~~s~Aaq~va~IA~~ElP~n~wp~li~~lv~n 137 (859)
T KOG1241|consen 75 QYQQRWLQLPAEIREQVKNNILRTLGSP-----------------EPRRPSSAAQCVAAIACIELPQNQWPELIVTLVSN 137 (859)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHcCCC-----------------CCCccchHHHHHHHHHHhhCchhhCHHHHHHHHHh
Confidence 111111 1122333444444322 22345679999999987533477889998888877
Q ss_pred hcCCCh-hHHHHHHHHHHHHHhhcH-HHHHHhHHHHHHHHHhhCC--CCChhHHHHHHHHHHHhhhhhchhHHhh-hhhh
Q 001442 348 LAAPEW-QKHHAALIALAQIAEGCA-KVMVKNLEQVLSMVLNSFR--DPHPRVRWAAINAIGQLSTDLGPDLQNQ-FHPQ 422 (1076)
Q Consensus 348 l~~~~~-~~r~aal~~l~~l~~~~~-~~~~~~l~~i~~~l~~~l~--d~~~~vr~~a~~~l~~l~~~~~~~~~~~-~~~~ 422 (1076)
..+... ..|++++.++|.+++... +.+..+...++..|+.+.. .++..||-+|..||-.-.++.+..+..+ -.+-
T Consensus 138 v~~~~~~~~k~~slealGyice~i~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~ 217 (859)
T KOG1241|consen 138 VGEEQASMVKESSLEALGYICEDIDPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNY 217 (859)
T ss_pred cccccchHHHHHHHHHHHHHHccCCHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhce
Confidence 765443 699999999999999864 5666778889999998885 4678999999999998888776665333 3445
Q ss_pred hHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHH-HHHHHHHHhhcCchhHHHHHHHHHHHHHHH------
Q 001442 423 VLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDG-IVSKLLVLLQNGKQMVQEGALTALASVADS------ 495 (1076)
Q Consensus 423 ll~~l~~~l~~~~~~~v~~~a~~aL~~l~~~~~~~~l~~~l~~-ll~~l~~~l~~~~~~v~~~al~ai~~l~~~------ 495 (1076)
++..++..-+. ++.+++.+|+.+|.++..-.- +.+.+|..+ ++...+..+.+.+.+|.-.+++-.++++..
T Consensus 218 iMqvvcEatq~-~d~~i~~aa~~ClvkIm~LyY-~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~ 295 (859)
T KOG1241|consen 218 IMQVVCEATQS-PDEEIQVAAFQCLVKIMSLYY-EFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAI 295 (859)
T ss_pred eeeeeeecccC-CcHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777777777 889999999999999986654 457788776 888888899999999999999888877653
Q ss_pred -hHhhHHhhH------------hhhHHHHHHHHhcc---CCchhhhhHHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHH
Q 001442 496 -SQEHFQKYY------------DAVMPFLKAILVNA---TDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMS 559 (1076)
Q Consensus 496 -~~~~~~~~~------------~~i~~~L~~~l~~~---~~~~~~~lr~~a~~~l~~i~~~~g~~~~~~~~~~ii~~l~~ 559 (1076)
.++.+..+. +.++|.|.+.+.+. .+.++|.....|-.|+..+++.+| +.+.|+ +++++-+
T Consensus 296 e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~-D~Iv~~---Vl~Fiee 371 (859)
T KOG1241|consen 296 EYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVG-DDIVPH---VLPFIEE 371 (859)
T ss_pred HHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhc-ccchhh---hHHHHHH
Confidence 122232222 37899999998772 234567777788889999999999 666664 6666664
Q ss_pred -HhcCCCCCCChhhHHHHHHHHHHHHHhc-cCcccchhhhhHHHHHhccCCCCccccCCCCCccccCCCCcccchhhcCC
Q 001442 560 -LQGSQMETDDPTTSYMLQAWARLCKCLG-QDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGD 637 (1076)
Q Consensus 560 -~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~l~~i~~~ll~~~~~~~~~~~~~~d~d~~~~~~d~~~~~~~~~~~ 637 (1076)
+.++ +..-|+...-+||++-.-.. ..+.|+.+..+|.+++.+. ||..
T Consensus 372 ~i~~p----dwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~-D~sl-------------------------- 420 (859)
T KOG1241|consen 372 NIQNP----DWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMS-DPSL-------------------------- 420 (859)
T ss_pred hcCCc----chhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhc-Cchh--------------------------
Confidence 3333 34456777777887755322 2378899999999988885 3322
Q ss_pred ceeeecchhHHHHHHHHHHHHHHHHHhhhcccc--cHHHHHHHhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 001442 638 KRIGIKTSVLEEKATACNMLCCYADELKEGFFP--WIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEKGLA 715 (1076)
Q Consensus 638 ~~~~v~~~~~~~k~~A~~~l~~i~~~~~~~~~p--~l~~~~~~l~~~l~~~~~~~vr~~a~~~l~~L~~~~~~~~~~~~~ 715 (1076)
..|.++..++|.+++.+++...+ |+...+..+...+.+ ++.+-..++.++..|+..+..+....
T Consensus 421 ----------~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~D--ePrva~N~CWAf~~Laea~~eA~~s~-- 486 (859)
T KOG1241|consen 421 ----------WVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLND--EPRVASNVCWAFISLAEAAYEAAVSN-- 486 (859)
T ss_pred ----------hhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhh--CchHHHHHHHHHHHHHHHHHHhccCC--
Confidence 22456788999999998876655 466777888888876 57888888888888887654432211
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHcc-C-CcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 001442 716 PGRNESYVKQLSDFIIPALVEALHK-E-PDTEICASMLDSLNECIQISGPLLDEGQVRSIVDEIKQVITASSSRKRERAE 793 (1076)
Q Consensus 716 ~~~~~~~~~~~~~~i~~~l~~~l~~-~-~~~~~~~~~l~~l~~~i~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 793 (1076)
|..+ ...+++..++..|++.-.. + .+...|.+++++|.++++.+.. ...+.+..+..++...+...-.. .
T Consensus 487 -~qt~-~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~-----~vy~~v~~~~l~il~kl~q~i~~-~ 558 (859)
T KOG1241|consen 487 -GQTD-PATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTD-----DVYPMVQKLTLVILEKLDQTISS-Q 558 (859)
T ss_pred -CCCC-ccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcH-----HHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 1111 1225777788888877654 2 4678899999999999987653 22222222222222222111100 0
Q ss_pred hhcCCCCChHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHhHhhhhcCCCCHHHHHHHHHHHHHHHH
Q 001442 794 RAKAEDFDAEESELIKEENEQEEEVFDQVGEILGTLIKTFKAAFLPFFDELSSYLTPMWGKDKTAEERRIAICIFDDVAE 873 (1076)
Q Consensus 794 ~~~~ed~d~~~~~~~~e~~e~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~r~~al~~l~~l~~ 873 (1076)
. .+-+|.. .-.++....+.+|+.+.+..|+++.++.+.++..++..++..++..+...|+..++.+++
T Consensus 559 ~-----l~~~dr~-------q~~eLQs~Lc~~Lq~i~rk~~~~~~~~~d~iM~lflri~~s~~s~~v~e~a~laV~tl~~ 626 (859)
T KOG1241|consen 559 I-----LSLADRA-------QLNELQSLLCNTLQSIIRKVGSDIREVSDQIMGLFLRIFESKRSAVVHEEAFLAVSTLAE 626 (859)
T ss_pred h-----ccHhhHH-------HHHHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHH
Confidence 0 0111111 224567789999999999999999899999999999988665666677789999999999
Q ss_pred HhhhhhHhhHHhHHHHHHhhcc-CCChhHHhhhhHHHHHHHhhcCCCchHHHHHHHHHHHHhhcCCCCCChhhhhHHHHH
Q 001442 874 QCREAALKYYETYLPFLLEACN-DENQDVRQAAVYGLGVCAEFGGSVVKPLVGEALSRLNVVIRHPNALQPENLMAYDNA 952 (1076)
Q Consensus 874 ~~~~~~~~~~~~ll~~l~~~l~-~~~~~vr~~a~~~lg~l~~~~~~~~~~~~~~il~~L~~~l~~~~~~~~~~~~~~~na 952 (1076)
.+|..+..|.+.|.|.+..++. -.+..|+..|+..+|.++...++.|.||...+++.|.+.|+++.. ++.++--+
T Consensus 627 ~Lg~~F~kym~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~~i~py~d~~mt~Lvq~Lss~~~----hR~vKP~I 702 (859)
T KOG1241|consen 627 SLGKGFAKYMPAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARALEDDILPYCDELMTVLVQCLSSPNL----HRNVKPAI 702 (859)
T ss_pred HHhHhHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHccCccc----cccccchH
Confidence 9999999999999999999995 578999999999999999999999999999999999999998753 46788889
Q ss_pred HHHHHHHHhhcCCCC--CHhhHHHHHHhhC---CCCCcHHH-------HH---HHHHHHHHHHh-hcCCcccCcCcCchh
Q 001442 953 VSALGKICQFHRDSI--DAAQVVPAWLNCL---PIKGDLIE-------AK---IVHEQLCSMVE-RSDSDLLGPNHQYLP 1016 (1076)
Q Consensus 953 ~~al~~i~~~~~~~~--~~~~~l~~~l~~l---p~~~d~~e-------~~---~~~~~l~~li~-~~~~~~~~~~~~~l~ 1016 (1076)
.+++|.|...-+..+ +++.++|.+-+.- +...|++. .+ .+|.++..-+. +..+..+.| +++
T Consensus 703 lS~FgDIAlaIg~~F~~Yl~~vm~llq~as~~~~d~~~~~~~dYvd~LRe~~leay~gi~qglk~~~~~~~~~p---~v~ 779 (859)
T KOG1241|consen 703 LSVFGDIALAIGADFEPYLEMVMPLLQQASSVQTDPADDSMVDYVDELREGILEAYTGIIQGLKTHADVMLVQP---YVP 779 (859)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCCCcccHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhc---chH
Confidence 999999999988887 6888888766543 22223222 12 34444443332 223444544 899
Q ss_pred hHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhCChh
Q 001442 1017 KIVSVFAEILCGKDLATEQTLSRIVNLLKQLQQTLPPA 1054 (1076)
Q Consensus 1017 ~i~~~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 1054 (1076)
+|++++..+-..... ++.+...+..++..+...||+.
T Consensus 780 ~I~sfi~~I~~e~~~-~~~~~~~a~GlIgDL~~~fg~~ 816 (859)
T KOG1241|consen 780 HIISFIDRIAAEPDV-SEALHAAALGLIGDLATMFGKG 816 (859)
T ss_pred HHHHHHHHHhcCccc-chHHHHHHHHHHHHHHHHcccc
Confidence 999999888864443 6789999999999999999953
No 10
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=99.98 E-value=2.6e-27 Score=259.63 Aligned_cols=624 Identities=16% Similarity=0.201 Sum_probs=455.1
Q ss_pred cchHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchh
Q 001442 335 TIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPD 414 (1076)
Q Consensus 335 ~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~ 414 (1076)
+..+.++..+.+.+.+.+..+..-|+.|+|-++...++ .++..++..++..+-......|..+..+|-.....++|.
T Consensus 43 dSe~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke---~~le~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~ 119 (1233)
T KOG1824|consen 43 DSERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKE---DQLETIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPS 119 (1233)
T ss_pred cchhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchH---HHHHHHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCc
Confidence 45667778888889999999999999999999866554 578888999988877777888888888888877777763
Q ss_pred HHhh----hhhhhHHHHHhhccCC-CChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCchhHHHHHHHHH
Q 001442 415 LQNQ----FHPQVLPALAGAMDDF-QNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTAL 489 (1076)
Q Consensus 415 ~~~~----~~~~ll~~l~~~l~~~-~~~~v~~~a~~aL~~l~~~~~~~~l~~~l~~ll~~l~~~l~~~~~~v~~~al~ai 489 (1076)
.... ..+.++|.+...+... ....++..++..+..+...++. .+.++...++..++.-+.++...+|+.++.+|
T Consensus 120 ~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~-ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l 198 (1233)
T KOG1824|consen 120 SSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGT-LLPNFHLSILKCLLPQLQSPRLAVRKKAITAL 198 (1233)
T ss_pred cccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcc-cCcchHHHHHHHHhhcccChHHHHHHHHHHHH
Confidence 3222 3445555555555431 2344788888888888888874 56678888999999999999999999999999
Q ss_pred HHHHHHhHhhHHhhHhhhHHHHHHHHhccCCchhhhhHHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHhcCCCCCCC
Q 001442 490 ASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDD 569 (1076)
Q Consensus 490 ~~l~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~g~~~~~~~~~~ii~~l~~~~~~~~~~~~ 569 (1076)
|.++..++.. .|..++..|.+.+.+.. ....+| ..+.|++.++++.| .+|..|.+.+++++.++.+..-+.+|
T Consensus 199 ~~la~~~~~~---ly~~li~~Ll~~L~~~~--q~~~~r-t~Iq~l~~i~r~ag-~r~~~h~~~ivp~v~~y~~~~e~~dD 271 (1233)
T KOG1824|consen 199 GHLASSCNRD---LYVELIEHLLKGLSNRT--QMSATR-TYIQCLAAICRQAG-HRFGSHLDKIVPLVADYCNKIEEDDD 271 (1233)
T ss_pred HHHHHhcCHH---HHHHHHHHHHhccCCCC--chHHHH-HHHHHHHHHHHHhc-chhhcccchhhHHHHHHhcccccCcH
Confidence 9999988876 45666777777776542 223343 46889999999999 68999999999999997754334577
Q ss_pred hhhHHHHHHHHHHHHHhccCcccchhhhhHHHHHhccCCCCccccCCCCCccccCCCCcccch-hhcCCceeeecchhHH
Q 001442 570 PTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMET-ITLGDKRIGIKTSVLE 648 (1076)
Q Consensus 570 ~~~~~~~~~~~~l~~~~~~~~~~~l~~i~~~ll~~~~~~~~~~~~~~d~d~~~~~~d~~~~~~-~~~~~~~~~v~~~~~~ 648 (1076)
.+|++++++++.+...++.++.||.|.++..+++.+.+||++.+.++||++.+..+|++|.+. -.+.|
T Consensus 272 ELrE~~lQale~fl~rcp~ei~p~~pei~~l~l~yisYDPNy~yd~~eDed~~~~ed~eDde~~deYsD----------- 340 (1233)
T KOG1824|consen 272 ELREYCLQALESFLRRCPKEILPHVPEIINLCLSYISYDPNYNYDTEEDEDAMFLEDEEDDEQDDEYSD----------- 340 (1233)
T ss_pred HHHHHHHHHHHHHHHhChhhhcccchHHHHHHHHHhccCCCCCCCCccchhhhhhhccccchhcccccc-----------
Confidence 899999999999999999999999999999999999999999887643322111111111110 00000
Q ss_pred HHHHHHHHHHHHHHHhhhcccccHHHHHHHhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHH
Q 001442 649 EKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSD 728 (1076)
Q Consensus 649 ~k~~A~~~l~~i~~~~~~~~~p~l~~~~~~l~~~l~~~~~~~vr~~a~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 728 (1076)
++..+|.||++|++++..++..- .+.+..+..
T Consensus 341 -----------------------------------DeD~SWkVRRaAaKcl~a~IsSR-------------~E~L~~~~q 372 (1233)
T KOG1824|consen 341 -----------------------------------DEDMSWKVRRAAAKCLEAVISSR-------------LEMLPDFYQ 372 (1233)
T ss_pred -----------------------------------ccchhHHHHHHHHHHHHHHHhcc-------------HHHHHHHHH
Confidence 11247999999999998887643 245777888
Q ss_pred HHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHhCCC---C-C---------H---HHHHHHHHHHHHHHHHHHHhHHHHH
Q 001442 729 FIIPALVEALHKEPDTEICASMLDSLNECIQISGPL---L-D---------E---GQVRSIVDEIKQVITASSSRKRERA 792 (1076)
Q Consensus 729 ~i~~~l~~~l~~~~~~~~~~~~l~~l~~~i~~~g~~---~-~---------~---~~~~~~~~~l~~~l~~~~~~~~~~~ 792 (1076)
.+-|.++..+++ .+..|...+++++...+...++. . + + ..+..-...+.+.+.+.+. .
T Consensus 373 ~l~p~lI~RfkE-REEnVk~dvf~~yi~ll~qt~~~~~~~~d~d~~e~~g~~s~~~~L~~~~~~iVkai~~qlr---~-- 446 (1233)
T KOG1824|consen 373 TLGPALISRFKE-REENVKADVFHAYIALLKQTRPVIEVLADNDAMEQGGTPSDLSMLSDQVPLIVKAIQKQLR---E-- 446 (1233)
T ss_pred HhCHHHHHHHHH-HhhhHHHHHHHHHHHHHHcCCCCcccccCchhhhccCCccchHHHHhhhHHHHHHHHHHHh---h--
Confidence 888999999874 46678888999998888877642 1 0 1 1122222223333333221 0
Q ss_pred HhhcCCCCChHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHhHhhhhcC-CCCHHHHHHHHHHHHHH
Q 001442 793 ERAKAEDFDAEESELIKEENEQEEEVFDQVGEILGTLIKTFKAAFLPFFDELSSYLTPMWGK-DKTAEERRIAICIFDDV 871 (1076)
Q Consensus 793 ~~~~~ed~d~~~~~~~~e~~e~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~-~~~~~~r~~al~~l~~l 871 (1076)
+ .-..+.+....+.+++...+....+++..++|.+...+.+ +.++..+..++..+.-+
T Consensus 447 ------k---------------s~kt~~~cf~lL~eli~~lp~~l~~~~~slvpgI~~~l~DkSsss~~ki~~L~fl~~~ 505 (1233)
T KOG1824|consen 447 ------K---------------SVKTRQGCFLLLTELINVLPGALAQHIPSLVPGIIYSLNDKSSSSNLKIDALVFLYSA 505 (1233)
T ss_pred ------c---------------cccchhhHHHHHHHHHHhCcchhhhcccccchhhhhhcCCccchHHHHHHHHHHHHHH
Confidence 0 0113456677888999999999999999999988887743 33455677788777666
Q ss_pred HHHhh-hhhHhhHHhHHHHHHhhccCCChhHHhhhhHHHHHHHhhcC-------CCchHHHHHHHHHHHHhhcCCCCCCh
Q 001442 872 AEQCR-EAALKYYETYLPFLLEACNDENQDVRQAAVYGLGVCAEFGG-------SVVKPLVGEALSRLNVVIRHPNALQP 943 (1076)
Q Consensus 872 ~~~~~-~~~~~~~~~ll~~l~~~l~~~~~~vr~~a~~~lg~l~~~~~-------~~~~~~~~~il~~L~~~l~~~~~~~~ 943 (1076)
+..++ +.+.|+.+.+.|++..+..++.+.+-..|....+.+++... -.+.||+.+++....+.+...+
T Consensus 506 L~s~~p~~fhp~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvirpl~~~~~~d~~~~v~~m~~~tl~rL~a~d---- 581 (1233)
T KOG1824|consen 506 LISHPPEVFHPHLSALSPPVVAAVGDPFYKISAEALLVCQQLVKVIRPLQPPSSFDASPYVKTMYDCTLQRLKATD---- 581 (1233)
T ss_pred HhcCChhhcccchhhhhhHHHHHhcCchHhhhHHHHHHHHHHHHHhcccCCCccCCCChhHHHHHHHHHHHHhccc----
Confidence 66555 56889999999999999999999999999888888888664 2467888888888888887654
Q ss_pred hhhhHHHHHHHHHHHHHhhcCCCC--CHhhHHHHHHhhCCCCCcHHHHHHHHHHHHHHHhhcCCcccCcCcCchhhHHHH
Q 001442 944 ENLMAYDNAVSALGKICQFHRDSI--DAAQVVPAWLNCLPIKGDLIEAKIVHEQLCSMVERSDSDLLGPNHQYLPKIVSV 1021 (1076)
Q Consensus 944 ~~~~~~~na~~al~~i~~~~~~~~--~~~~~l~~~l~~lp~~~d~~e~~~~~~~l~~li~~~~~~~~~~~~~~l~~i~~~ 1021 (1076)
.+.++|+.|++|+|.++.+.++.+ .++.++|.++..|.. +-..-.++++++.+....-.--+.+ ++.+++..
T Consensus 582 ~DqeVkeraIscmgq~i~~fgD~l~~eL~~~L~il~eRl~n---EiTRl~AvkAlt~Ia~S~l~i~l~~---~l~~il~~ 655 (1233)
T KOG1824|consen 582 SDQEVKERAISCMGQIIANFGDFLGNELPRTLPILLERLGN---EITRLTAVKALTLIAMSPLDIDLSP---VLTEILPE 655 (1233)
T ss_pred ccHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhc---hhHHHHHHHHHHHHHhccceeehhh---hHHHHHHH
Confidence 357999999999999999998876 689999999999853 2346678888887774321111223 57778887
Q ss_pred HHHHhcCCCC-CCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCCH
Q 001442 1022 FAEILCGKDL-ATEQTLSRIVNLLKQLQQTLPPATLASTWSSLQP 1065 (1076)
Q Consensus 1022 ~~~~l~~~~~-~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~ 1065 (1076)
+...+.+... ....+...+-.+++.+...+|....+.++..+|+
T Consensus 656 l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~e~vL~el~~ 700 (1233)
T KOG1824|consen 656 LASFLRKNQRALRLATLTALDKLVKNYSDSIPAELLEAVLVELPP 700 (1233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhh
Confidence 7777763311 1234556666677777777777778888877764
No 11
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=5.6e-26 Score=246.74 Aligned_cols=565 Identities=17% Similarity=0.241 Sum_probs=386.8
Q ss_pred CChHHHHHHHHHhcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHcc-CCCHHHHHHHHHHHHHhcccCCCCccc---
Q 001442 19 PDSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQR-SPHPEARAMAAVLLRKLLTRDDSFLWP--- 94 (1076)
Q Consensus 19 ~~~~~l~~lL~~~~s~d~~~r~~Ae~~L~~~~~~~p~~~~~~L~~il~~-~~~~~~R~~a~v~Lk~~i~~~~~~~w~--- 94 (1076)
.|++.+.+.|....+||+++|+.||+.|+++.. |++ |...+++++.+ ..++.+|..|++.+||.++++ |.
T Consensus 2 ~~le~l~~~l~qTl~pdps~rk~aEr~L~~~e~-q~~-y~l~lL~Lv~~~~~d~~~r~aaav~fKN~iKr~----W~~~~ 75 (960)
T KOG1992|consen 2 ANLETLANYLLQTLSPDPSVRKPAERALRSLEG-QQN-YPLLLLNLVANGQQDPQIRVAAAVYFKNYIKRN----WIPAE 75 (960)
T ss_pred ccHHHHHHHHHhcCCCCCccCchHHHHHHHhcc-CCC-chHHHHHHHhccCcChhHHHHHHHHHHHHHHhc----cCcCC
Confidence 367899999999999999999999999999988 544 78889999987 459999999999999999998 64
Q ss_pred ----CCCHhHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhcccCCCCcchhHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 001442 95 ----RLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQL 170 (1076)
Q Consensus 95 ----~l~~~~~~~lk~~Ll~~l~~~~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~~~~~~~r~~al~~L~~l 170 (1076)
++.++.++.||..++..+.+ ....++..++++++.|+++++| ..||+|+|.|...++++|-.+-.+.+.+-.++
T Consensus 76 ~~~~~i~~~~~e~ikslIv~lMl~-s~~~iQ~qlseal~~Ig~~DFP-~kWptLl~dL~~~ls~~D~~~~~gVL~tahsi 153 (960)
T KOG1992|consen 76 DSPIKIIEEDREQIKSLIVTLMLS-SPFNIQKQLSEALSLIGKRDFP-DKWPTLLPDLVARLSSGDFNVINGVLVTAHSI 153 (960)
T ss_pred CCccccchhHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHhccccc-hhhHHHHHHHHhhccccchHHHHHHHHHHHHH
Confidence 47788999999999998874 5788999999999999999999 79999999999999998876665555555544
Q ss_pred ---------------------------HHHHH-------------------------------HhhCCcchHhHHhhhHH
Q 001442 171 ---------------------------IINFI-------------------------------QCLTSSADRDRFQDLLP 192 (1076)
Q Consensus 171 ---------------------------~~~~~-------------------------------~~l~~~~~~~~~~~l~p 192 (1076)
+..++ ..+..++-+.-|.+.+.
T Consensus 154 Fkr~R~efrSdaL~~EIK~vLd~f~~Plt~Lf~~t~~l~~~~~~~~~~l~~lf~vlll~~klfysLn~QDiPEFFEdnm~ 233 (960)
T KOG1992|consen 154 FKRYRPEFRSDALWLEIKLVLDRFAEPLTDLFRKTMELIQRHANDAAALNILFGVLLLICKLFYSLNFQDIPEFFEDNMK 233 (960)
T ss_pred HHhcCcccccHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHhhhcccchHHHHhhHH
Confidence 01111 11111111333444455
Q ss_pred HHHHHHHHHHhCC------C-------HHHHHHHHHHHHHHHccCcHHHHHhHHHHHHHHHHHhcCCCc---chhHHHHH
Q 001442 193 LMMRTLTESLNNG------N-------EATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESL---EEGTRHLA 256 (1076)
Q Consensus 193 ~~l~~l~~~~~~~------~-------~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~---~~~~r~~a 256 (1076)
.+|..+.+.++.+ + .+++..+|+.+.-.+..+.+.|.+++++++...+..+..-.. -+.+...|
T Consensus 234 ~wM~~F~k~l~~~~p~le~~~ee~~~l~~lka~ICEi~~LY~~kYeEef~~fl~~fv~~~W~LL~~~s~~~kyD~Lvs~A 313 (960)
T KOG1992|consen 234 TWMGAFHKLLTYDNPLLESDEEEATVLDKLKAQICEIFNLYATKYEEEFQPFLPDFVTATWNLLVSTSPDTKYDYLVSKA 313 (960)
T ss_pred HHHHHHHHHHhccCcccccCcccccHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence 5666666655421 1 235678899999999999999999999999888877643332 34578889
Q ss_pred HHHHHHHHHhhcccchhhccchhhHHHHHHH-HHHhhcCCCCCccccCCCC------CCcccCCCCchhhHHHHHHHHHH
Q 001442 257 IEFVITLAEARERAPGMMRKLPQFINRLFAI-LMSMLLDIEDDPLWHSAET------EDEDAGESSNYSVGQECLDRLAI 329 (1076)
Q Consensus 257 l~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~-l~~~l~~~~dd~~~~~~~~------e~~d~~e~~~~~~a~~~l~~l~~ 329 (1076)
++|+.++++-.++. +.+. ..+.+.++... ++..+.-..+|.+..+++. |-|..|-++-+++|.+.+..|+.
T Consensus 314 l~FLt~V~~r~~y~-~~F~-~~~vl~~i~e~VvlpN~~lR~eDeElFED~pleYiRRDlEGsDvdTRRR~a~dlvrgL~~ 391 (960)
T KOG1992|consen 314 LQFLTSVSRRPHYA-ELFE-GENVLAQICEKVVLPNLILREEDEELFEDNPLEYIRRDLEGSDVDTRRRAAIDLVRGLCK 391 (960)
T ss_pred HHHHHHHHhhhhhH-hhhc-chHHHHHHHHhhcccccccchhhHHHhccCHHHHHHHhcccCCcchhHHHHHHHHHHHHH
Confidence 99999999832221 1111 12233333321 1111111112221111110 01122344567899999999999
Q ss_pred HcCCCcchHHHHHHHHHhhc------CCChhHHHHHHHHHHHHHhhc-------HH--HHHHhHHHHHHHHHhhCC----
Q 001442 330 ALGGNTIVPVASEQLPAYLA------APEWQKHHAALIALAQIAEGC-------AK--VMVKNLEQVLSMVLNSFR---- 390 (1076)
Q Consensus 330 ~~~~~~~~~~l~~~l~~~l~------~~~~~~r~aal~~l~~l~~~~-------~~--~~~~~l~~i~~~l~~~l~---- 390 (1076)
.+. ..+.+.+..++...+. +.+|+.+..++..+.+++... .. .+.+..+-+...+.+.|.
T Consensus 392 ~fe-~~vt~v~~~~v~~~l~~y~~nPS~nWk~kd~aiyL~talaik~~t~~~Gvtstn~lvdv~~Ff~~~ilp~L~s~~v 470 (960)
T KOG1992|consen 392 NFE-GQVTGVFSSEVQRLLDQYSKNPSGNWKKKDRAIYLVTALAIKGQTAKHGVTSTNELVDVVDFFANQILPDLLSPNV 470 (960)
T ss_pred Hhc-chhHHHHHHHHHHHHHHhccCCCccccccchhhhhhHHHHhhcchhhcceeeccccccHHHHHHHHhhHHhccCcc
Confidence 985 4677777777766665 679999999999888887531 11 111112222333444443
Q ss_pred CCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcC--------CcccccCc
Q 001442 391 DPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENC--------TPEILTPY 462 (1076)
Q Consensus 391 d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~aL~~l~~~~--------~~~~l~~~ 462 (1076)
.++|.++..+.+-+-.+-..+++ .++-.++|.+...|+. +...|...|..++..+.... +++.+.||
T Consensus 471 n~~pilka~aIKy~~~FR~ql~~----~~lm~~~p~li~~L~a-~s~vvhsYAA~aiEkil~vre~~~~~if~~~~iap~ 545 (960)
T KOG1992|consen 471 NEFPILKADAIKYIYTFRNQLGK----EHLMALLPRLIRFLEA-ESRVVHSYAAIAIEKLLTVRENSNAKIFGAEDIAPF 545 (960)
T ss_pred ccccchhhcccceeeeecccCCh----HHHHHHHHHHHHhccC-cchHHHHHHHHHHHhccccccCccccccchhhcchH
Confidence 56889998888766665555543 5677899999999998 78889999999999886432 33457889
Q ss_pred hHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHhHhhHHhhHhhhHHHHHHHHhc-cCCchhhhhHHHHHHHHHHHHHHh
Q 001442 463 LDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVN-ATDKSNRMLRAKSMECISLVGMAV 541 (1076)
Q Consensus 463 l~~ll~~l~~~l~~~~~~v~~~al~ai~~l~~~~~~~~~~~~~~i~~~L~~~l~~-~~~~~~~~lr~~a~~~l~~i~~~~ 541 (1076)
...++..|++.+..+...--+-...+|-.+.....+...|+.+.+++.|-+++.. ..++.+...-...+|.+|.+.+..
T Consensus 546 ~~~ll~nLf~a~s~p~~~EneylmKaImRii~i~~~~i~p~~~~~l~~Lteiv~~v~KNPs~P~fnHYLFEsi~~li~~t 625 (960)
T KOG1992|consen 546 VEILLTNLFKALSLPGKAENEYLMKAIMRIISILQSAIIPHAPELLRQLTEIVEEVSKNPSNPQFNHYLFESIGLLIRKT 625 (960)
T ss_pred HHHHHHHHHHhccCCcccccHHHHHHHHHHHHhCHHhhhhhhhHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHH
Confidence 9999999999888877666677888888888888888889999999988887654 233444455567889999888766
Q ss_pred chhh---hhhhHHHHHHHHHHHhcCCCCCCChhhHHHHHHHHHHHHHhccCcccchhhhhHHHH
Q 001442 542 GKDK---FRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLL 602 (1076)
Q Consensus 542 g~~~---~~~~~~~ii~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~i~~~ll 602 (1076)
++.. ....-..+++....+...+ -.+..+|+++.++.+.+..+..+.+....++|.++
T Consensus 626 ~~~~~~~vs~~e~aL~p~fq~Il~eD---I~EfiPYvfQlla~lve~~~~~ip~~~~~l~~~lL 686 (960)
T KOG1992|consen 626 CKANPSAVSSLEEALFPVFQTILSED---IQEFIPYVFQLLAVLVEHSSGTIPDSYSPLFPPLL 686 (960)
T ss_pred hccCchHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHhc
Confidence 5332 2333334444433332221 12356778888888877776644444444444443
No 12
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=2.7e-25 Score=240.10 Aligned_cols=515 Identities=17% Similarity=0.223 Sum_probs=338.9
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHcc-CCCHHHHHHHHHHHHHhcccCCCCccc-----CCC
Q 001442 24 FETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQR-SPHPEARAMAAVLLRKLLTRDDSFLWP-----RLS 97 (1076)
Q Consensus 24 l~~lL~~~~s~d~~~r~~Ae~~L~~~~~~~p~~~~~~L~~il~~-~~~~~~R~~a~v~Lk~~i~~~~~~~w~-----~l~ 97 (1076)
+.++|++..|||..++|.||++|+++++ +|+ |...|..+..+ +.+-.+|-+|++.+||-|.+. |+ .++
T Consensus 2 vvq~Lq~Ats~d~~v~k~AE~qLr~WEt-qPG-F~~~L~sI~l~~t~dv~vRWmAviyfKNgIdry----WR~~~~~sl~ 75 (978)
T KOG1993|consen 2 VVQVLQQATSQDHIVVKPAEAQLRQWET-QPG-FFSKLYSIFLSKTNDVSVRWMAVIYFKNGIDRY----WRRNTKMSLP 75 (978)
T ss_pred HHHHHHHhcCCCcccchhHHHHHHhhcc-CCc-HHHHHHHHHhccccceeeeeehhhhHhcchhHH----hhcCCcccCC
Confidence 4688999999999999999999999999 788 55888888766 677999999999999999987 76 489
Q ss_pred HhHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhcccCCCCcchhHHHHHHhhcCC----CHHHHHHHHHHHHHHHHH
Q 001442 98 LHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSD----SVKLQESAFLIFAQLIIN 173 (1076)
Q Consensus 98 ~~~~~~lk~~Ll~~l~~~~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~~~----~~~~r~~al~~L~~l~~~ 173 (1076)
+|.|..||..|+..+. |+++.+..+.|.++++|||.++| .+||+++|.|.+.+++. |....++.+.++..++..
T Consensus 76 ~EEK~~iR~~Ll~~~~-E~~nQlaiQ~AvlisrIARlDyP-reWP~Lf~~L~~~Lq~~~~~gD~~~~~RiLi~l~~ilK~ 153 (978)
T KOG1993|consen 76 PEEKDFIRCNLLLHSD-EENNQLAIQNAVLISRIARLDYP-REWPDLFPDLLGQLQSSLGTGDSLVQHRILITLHHILKA 153 (978)
T ss_pred HHHHHHHHHHHHHhcc-cchhHHHHHHHHHHHHHHhcCCC-ccchhHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHH
Confidence 9999999999999887 78999999999999999999999 79999999999988776 777777787777666211
Q ss_pred HHHh-hCCcchHhHHhhhHHHH--------------------------------------HHHHH---------------
Q 001442 174 FIQC-LTSSADRDRFQDLLPLM--------------------------------------MRTLT--------------- 199 (1076)
Q Consensus 174 ~~~~-l~~~~~~~~~~~l~p~~--------------------------------------l~~l~--------------- 199 (1076)
+-.. +. .+.+.|..+.|.+ ++++.
T Consensus 154 Lat~RL~--a~rk~F~el~~~I~~~l~~~l~s~lt~~~lq~~ss~~ea~~LsalQ~s~~~lk~lRrlvv~G~~~P~kse~ 231 (978)
T KOG1993|consen 154 LATKRLL--ADRKAFYELAPEILTILAPILWSSLTMMFLQSVSSIKEATLLSALQRSYLTLKVLRRLVVFGFQNPSKSEF 231 (978)
T ss_pred HHHhHHh--hhhHHHHHHhHHHHHHHHHHHhcchHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhccCCcchhhH
Confidence 1000 00 0001111111111 11111
Q ss_pred -----HHH-----------hCCC--------HHHHHHHHHHHHHHHccCcHHHHH--hHHHHHHHHHHHhcCC-------
Q 001442 200 -----ESL-----------NNGN--------EATAQEALELLIELAGTEPRFLRR--QLVDVVGSMLQIAEAE------- 246 (1076)
Q Consensus 200 -----~~~-----------~~~~--------~~~~~~~~~~l~~l~~~~~~~~~~--~l~~l~~~l~~~~~~~------- 246 (1076)
+++ ..+. +......+..+..+.+.+|..|.. -.+..+++.+....++
T Consensus 232 ~eRl~~F~e~~~~~~~~~~s~~~~~vk~di~ek~~i~l~K~l~~l~~rhpfsF~~~~~~~~~l~f~~~yIf~~~~~l~~~ 311 (978)
T KOG1993|consen 232 FERLLQFLELHQRKLLSSLSTGTQSVKSDILEKFCIKLMKVLAFLFNRHPFSFSFYSPCPVKLEFSIDYIFDEYDFLGQI 311 (978)
T ss_pred HHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHHhcCCCcccccccccceeeehhhhhhhcccchhccc
Confidence 100 0000 011122333444455555544443 2333333333322111
Q ss_pred ----CcchhHHHHHHHHHHHHHHhhcccch-----hh----------ccc------hhhHHHHHHHHHHhh--cCCCCCc
Q 001442 247 ----SLEEGTRHLAIEFVITLAEARERAPG-----MM----------RKL------PQFINRLFAILMSML--LDIEDDP 299 (1076)
Q Consensus 247 ----~~~~~~r~~al~~l~~l~~~~~~~~~-----~~----------~~~------~~~~~~l~~~l~~~l--~~~~dd~ 299 (1076)
..-++.-.+|+..+..+.....+++. .. .++ .+-+..+...++.+. ...+|-.
T Consensus 312 ~~~~~~fe~f~iq~l~mlK~vm~~~~~~~s~~~k~~~d~~~~~~~~a~~i~~sFl~~~rIt~lcd~Lvt~YflLt~~eLE 391 (978)
T KOG1993|consen 312 SGHLSSFEEFFIQCLNMLKKVMIMKNYKFSLTIKEFCDTKDEHLETAQKIYNSFLTDNRITNLCDLLVTHYFLLTEEELE 391 (978)
T ss_pred ccccccHHHHHHHHHHHHHHHHHhhcccccccchhcccCccccHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcCHHHHH
Confidence 12234556666666654433211110 00 000 112223333333321 1223445
Q ss_pred cccCCCCC---Cc--ccCCCCchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhcCC---------ChhHHHHHHHHHHH
Q 001442 300 LWHSAETE---DE--DAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAP---------EWQKHHAALIALAQ 365 (1076)
Q Consensus 300 ~~~~~~~e---~~--d~~e~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~---------~~~~r~aal~~l~~ 365 (1076)
+|..+++. ++ .+-+...|-+|...+..+...++ +-+.|.++..+....+.. ..-.+.|.+.++|.
T Consensus 392 eW~~dPE~~~~Eq~~~dwey~lRPCaE~L~~~lF~~ys-qllvP~~l~~i~~a~~~~~pt~~~~l~a~L~KDAiYaa~g~ 470 (978)
T KOG1993|consen 392 EWTQDPEGWVLEQSGGDWEYNLRPCAEKLYKDLFDAYS-QLLVPPVLDMIYSAQELQSPTVTEDLTALLLKDAIYAAFGL 470 (978)
T ss_pred HHhcChHHhhhhcccccceeccchhHHHHHHHHHHHHH-HhhhHHHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHH
Confidence 67766543 11 12334566778888888888886 678888888886544321 13356677777777
Q ss_pred HHhhcHHH--HHHhHHHHHHHHHhhCCC---CChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCChhHH
Q 001442 366 IAEGCAKV--MVKNLEQVLSMVLNSFRD---PHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQ 440 (1076)
Q Consensus 366 l~~~~~~~--~~~~l~~i~~~l~~~l~d---~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~v~ 440 (1076)
.+....+. +.+.+ ...+++.+.. ....+|+..+|.+|++++. ....+..+-+..++++.++|..+..|+
T Consensus 471 ~a~~l~~~~dF~~Wl---~~~llpEl~~~~~~~RiiRRRVa~ilg~Wvsv---q~~~e~k~l~Y~a~lnLL~d~~D~vV~ 544 (978)
T KOG1993|consen 471 AAYELSNILDFDKWL---QEALLPELANDHGNSRIIRRRVAWILGQWVSV---QQKLELKPLLYCAFLNLLQDQNDLVVR 544 (978)
T ss_pred HHHHHHhcCCHHHHH---HHhhCHHhhhcccchhHHHHHHHHHHhhhhhe---echHhHHHHHHHHHHHhcCccccceee
Confidence 66554431 12222 2233333322 2345799999999998763 222456677888889999994477899
Q ss_pred HHHHHHHHHhhhcC--CcccccCchHHHHHHHHHHhhcC-chhHHHHHHHHHHHHHHHhHhhHHhhHhhhHHHHHHHHhc
Q 001442 441 AHAASAVLNFSENC--TPEILTPYLDGIVSKLLVLLQNG-KQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVN 517 (1076)
Q Consensus 441 ~~a~~aL~~l~~~~--~~~~l~~~l~~ll~~l~~~l~~~-~~~v~~~al~ai~~l~~~~~~~~~~~~~~i~~~L~~~l~~ 517 (1076)
.++..++...++.. .++.+.||++.+...+++++... ..+.|..++..++.++..+++.+.||...++..+...|..
T Consensus 545 Ltt~~tlkl~vDD~nF~~dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~I~P~~~~ivq~lp~LWe~ 624 (978)
T KOG1993|consen 545 LTTARTLKLVVDDWNFSEDSFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSEHIAPYASTIVQYLPLLWEE 624 (978)
T ss_pred hHHHHHHHHhhhhccCChhhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhh
Confidence 99999999999864 55668899999999999998764 4578889999999999999999999999999999998875
Q ss_pred cCCchhhhhHHHHHHHHHHHHHHhchhh--hhhhHHHHHHHH
Q 001442 518 ATDKSNRMLRAKSMECISLVGMAVGKDK--FRDDAKQVMEVL 557 (1076)
Q Consensus 518 ~~~~~~~~lr~~a~~~l~~i~~~~g~~~--~~~~~~~ii~~l 557 (1076)
. .+...+|.+.+.++..+..++|.+. +.|++-.+++..
T Consensus 625 s--~~e~lLr~alL~~L~~lV~alg~qS~~~~~fL~pVIel~ 664 (978)
T KOG1993|consen 625 S--EEEPLLRCALLATLRNLVNALGAQSFEFYPFLYPVIELS 664 (978)
T ss_pred h--ccCcHHHHHHHHHHHHHHHHhccCCccchHHHHHHHHHh
Confidence 3 3567799999999999999998433 445555555543
No 13
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=99.97 E-value=1.2e-24 Score=239.29 Aligned_cols=545 Identities=18% Similarity=0.244 Sum_probs=367.1
Q ss_pred ChHHHHHHHHHhcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHcc-CCCHHHHHHHHHHHHHhcccCCCCcccC---
Q 001442 20 DSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQR-SPHPEARAMAAVLLRKLLTRDDSFLWPR--- 95 (1076)
Q Consensus 20 ~~~~l~~lL~~~~s~d~~~r~~Ae~~L~~~~~~~p~~~~~~L~~il~~-~~~~~~R~~a~v~Lk~~i~~~~~~~w~~--- 95 (1076)
+.+.+..+|.+++|+|..+|.+||.+|+++.. +++|...|+++..+ ...-..||.|.+.||+.+.++ |..
T Consensus 2 ~~~~ii~~L~~~ls~d~~vr~~AE~~l~qle~--~~~f~~aL~~va~~~~~sl~lRQ~A~v~L~~yie~h----W~~~~E 75 (1005)
T KOG2274|consen 2 VKQAIIELLSGSLSADQNVRSQAETQLKQLEL--TEGFGVALAEVAANKDASLPLRQIALVLLKRYIEKH----WSPNFE 75 (1005)
T ss_pred cHHHHHHHHHhhcCCChhHHHHHHHHHhcccc--chHHHHHHHHHHhCcccCchHHHHHHHHHHHHHHHh----CCChHh
Confidence 45688999999999999999999999999987 45588999999887 477889999999999999998 652
Q ss_pred -------CCHhHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhcccCCCCcchhHHHHHHhhcCCCHHHHHHHHHHHH
Q 001442 96 -------LSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFA 168 (1076)
Q Consensus 96 -------l~~~~~~~lk~~Ll~~l~~~~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~~~~~~~r~~al~~L~ 168 (1076)
.+.+.|..||+.|++.+. +++..+|..++.+++.||..+|| +.||+++|.+..++.+++...-++|+++|.
T Consensus 76 ~fr~~~~~~e~~K~~IRe~Ll~~l~-~sn~ki~~~vay~is~Ia~~D~P-d~WpElv~~i~~~l~~~n~n~i~~am~vL~ 153 (1005)
T KOG2274|consen 76 AFRYPLIVSEEVKALIREQLLNLLD-DSNSKIRSAVAYAISSIAAVDYP-DEWPELVPFILKLLSSGNENSIHGAMRVLA 153 (1005)
T ss_pred hccCCCcccHHHHHHHHHHHHhhhh-ccccccchHHHHHHHHHHhccCc-hhhHHHHHHHHHHHhccchhhhhhHHHHHH
Confidence 457889999999999998 78999999999999999999999 799999999999999999999999999998
Q ss_pred HHHHHHH-------------------------------------------HhhC------CcchHhHHhhhHHHHHHHHH
Q 001442 169 QLIINFI-------------------------------------------QCLT------SSADRDRFQDLLPLMMRTLT 199 (1076)
Q Consensus 169 ~l~~~~~-------------------------------------------~~l~------~~~~~~~~~~l~p~~l~~l~ 199 (1076)
.+...+. .-+. .......+.+.++.++..+.
T Consensus 154 el~~ev~~ee~~~~~~~~l~~m~~~f~~~~~~s~~~~~~aa~~~lf~sc~~li~~~~e~~~~~~~~~~s~~l~~~~~~l~ 233 (1005)
T KOG2274|consen 154 ELSDEVDVEEMFFVGPVSLAEMYRIFALTIVYSIITRLGAARGKLFTSCLTLITNVEEVWAEHVKVFLSQILNQFMDILE 233 (1005)
T ss_pred HHHHHHHHHHHhcccccchhhhhhhhhhccccchhHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8821110 0000 00011223445666777776
Q ss_pred HHHhCC---CHHHHHHHHHHHHHHHccCcHHHHHhHHHHHHHHHHHhc----------------C----CCcc------h
Q 001442 200 ESLNNG---NEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAE----------------A----ESLE------E 250 (1076)
Q Consensus 200 ~~~~~~---~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~l~~~~~----------------~----~~~~------~ 250 (1076)
+.++-+ +...+.....++..+.++.|..+.+++...++..++... + .+.+ +
T Consensus 234 h~l~~~~g~~~~~~~eilk~~t~l~~nfp~~~~~~~~~~~~~vw~~~~~~~~~yir~~V~~~e~~~~~~~dsd~e~~~~~ 313 (1005)
T KOG2274|consen 234 HPLQRNDGSDFSLRMEILKCLTQLVENFPSLINPFMMGMFSIVWQTLEKILAVYVRESVNGTEDSYDARYDSDPEEKSVE 313 (1005)
T ss_pred hhhcccccchHHHHHHHHHHHHHHHHhhHHhhhHHHHhhhhHHHHHHHHHHhhhhhhhccccccCcccccCCchhhhChH
Confidence 666543 345788899999999999998888877766665554331 0 0011 1
Q ss_pred hHHHHHHHHHHHHHHhhcccchhhccchhhHHHHHHHHHHhhcCCCCC-ccccCCCCC---CcccCCCCchhhHHHHHHH
Q 001442 251 GTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDD-PLWHSAETE---DEDAGESSNYSVGQECLDR 326 (1076)
Q Consensus 251 ~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~dd-~~~~~~~~e---~~d~~e~~~~~~a~~~l~~ 326 (1076)
......++|+..+++..... +..+.-+..+++.+...++-.++. ..|..+... +|+++ .+.+..+...+-.
T Consensus 314 ~l~i~i~eF~s~i~t~~~~~----~ti~~~l~~lI~~~v~y~Qlseeqie~w~sD~~~fV~dEd~~-~~~~~~~rd~~~~ 388 (1005)
T KOG2274|consen 314 TLVIQIVEFLSTIVTNRFLS----KTIKKNLPELIYQLVAYLQLSEEQIEVWTSDVNQFVADEDDG-YTARISVRDLLLE 388 (1005)
T ss_pred HhhhhHHHHHHHHHHHHHHH----HHhhhhhHHHHHHHHHHHHhhHHHHHHHhccHHHhhccCCCC-chhhhhHHHHHHH
Confidence 24556688888888753211 111122333444444333322111 134433221 22222 3455556666667
Q ss_pred HHHHcCCCcchHHHHHH----HHHh-----hc-CCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCC-CCChh
Q 001442 327 LAIALGGNTIVPVASEQ----LPAY-----LA-APEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFR-DPHPR 395 (1076)
Q Consensus 327 l~~~~~~~~~~~~l~~~----l~~~-----l~-~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~-d~~~~ 395 (1076)
+...+|...+ ..+.+. +.+. ++ ..+|+..++.+.+...+..+. .....+..+...+..++. ...|.
T Consensus 389 v~~~f~~~~i-~~i~~a~~~~~~es~at~~~~~~~~wk~qea~l~a~~~~~~~~--~~dd~l~~l~~~~~~~l~~~e~P~ 465 (1005)
T KOG2274|consen 389 VITTFGNEGI-NPIQDAAGRHFQESQATYLFNNESWWKIQEALLVAAESVRIDD--ANDDKLIELTIMIDNGLVYQESPF 465 (1005)
T ss_pred HHHhccchhh-hHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhhcccCc--chHHHHHHHHHHHHhhcccccCHH
Confidence 7777763333 233333 3221 12 346888888888888776432 223455566666666664 55677
Q ss_pred HHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhh
Q 001442 396 VRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQ 475 (1076)
Q Consensus 396 vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~aL~~l~~~~~~~~l~~~l~~ll~~l~~~l~ 475 (1076)
.-..+.++++.+++...-. .+....++...+..+.-...+.++.+|+.++..+| +.+.+.+.+|.++..|.++..
T Consensus 466 Ll~Ra~~~i~~fs~~~~~~--~~~~~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~---~~~vl~~~~p~ild~L~qlas 540 (1005)
T KOG2274|consen 466 LLLRAFLTISKFSSSTVIN--PQLLQHFLNATVNALTMDVPPPVKISAVRAFCGYC---KVKVLLSLQPMILDGLLQLAS 540 (1005)
T ss_pred HHHHHHHHHHHHHhhhccc--hhHHHHHHHHHHHhhccCCCCchhHHHHHHHHhcc---CceeccccchHHHHHHHHHcc
Confidence 7779999999988764322 24566677777766654356778888888877777 556788999999999999999
Q ss_pred cCchhHHHHHHHHHHHHHHHhHhhHHhhHhhhHHHHHHHHhccCCchhhhhHHHHHHHHHHHHHHhchhhhhhhHHHHHH
Q 001442 476 NGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVME 555 (1076)
Q Consensus 476 ~~~~~v~~~al~ai~~l~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~g~~~~~~~~~~ii~ 555 (1076)
..+.++.....++++.++..-++.-...-+.+.|.++.++.+..+ +..+.+.+.+++-.+.... ....|+....++
T Consensus 541 ~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~--DP~V~~~~qd~f~el~q~~--~~~g~m~e~~iP 616 (1005)
T KOG2274|consen 541 KSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSE--DPQVASLAQDLFEELLQIA--ANYGPMQERLIP 616 (1005)
T ss_pred cccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcC--CchHHHHHHHHHHHHHHHH--HhhcchHHHHHH
Confidence 999999989999999888754432222335677888887776433 2356667777777776643 345677777888
Q ss_pred HHHHHhcCC-CCCCChhhHHHHHHHHHHHHHhccC
Q 001442 556 VLMSLQGSQ-METDDPTTSYMLQAWARLCKCLGQD 589 (1076)
Q Consensus 556 ~l~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~ 589 (1076)
.+++..+.. ....-.....++..+..+.+.-+..
T Consensus 617 slisil~~~~~~~~~~l~~~aidvLttvvr~tp~p 651 (1005)
T KOG2274|consen 617 SLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSP 651 (1005)
T ss_pred HHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCC
Confidence 877754322 1111223444555555555554444
No 14
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=99.96 E-value=2.5e-24 Score=230.00 Aligned_cols=751 Identities=16% Similarity=0.192 Sum_probs=492.1
Q ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHhhCCcchHhHHhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccCcHHHHHh
Q 001442 152 VSSDSVKLQESAFLIFAQLIINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQ 231 (1076)
Q Consensus 152 ~~~~~~~~r~~al~~L~~l~~~~~~~l~~~~~~~~~~~l~p~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~ 231 (1076)
++++.+..|..+++.|..=...+ .....|..++|.+|+.- -+...+......+..+.....+...||
T Consensus 372 vKNG~ppmRk~~LR~ltdkar~~-------ga~~lfnqiLpllMs~t------LeDqerhllVkvidriLyklDdlvrpY 438 (1172)
T KOG0213|consen 372 VKNGTPPMRKSALRILTDKARNF-------GAGPLFNQILPLLMSPT------LEDQERHLLVKVIDRILYKLDDLVRPY 438 (1172)
T ss_pred hcCCCchhHHHHHHHHHHHHHhh-------ccHHHHHHHHHHHcCcc------ccchhhhhHHHHHHHHHHhhcccchhc
Confidence 45566667777777763321111 12334555556555431 234556677777777776667777888
Q ss_pred HHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHhhcccchhhccchhhHHHHHHHHHHhhcCCCCCccccCCCCCCccc
Q 001442 232 LVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDA 311 (1076)
Q Consensus 232 l~~l~~~l~~~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~dd~~~~~~~~e~~d~ 311 (1076)
++.|+-.+-..+- +.+-..|...-|.+..+++. + . +.. .+ ..|. + +. |.
T Consensus 439 VhkILvVieplli--ded~yar~egreIisnLaka---a-G----la~----mi----stmr-p----Di--------dn 487 (1172)
T KOG0213|consen 439 VHKILVVIEPLLI--DEDYYARVEGREIISNLAKA---A-G----LAT----MI----STMR-P----DI--------DN 487 (1172)
T ss_pred eeeeEEEeeccee--cchHHHhhchHHHHHHHHHH---h-h----hHH----HH----Hhhc-C----Cc--------cc
Confidence 8766543333332 23455677888888888873 1 1 111 11 1121 1 00 01
Q ss_pred CCCCchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCC
Q 001442 312 GESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAP-EWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFR 390 (1076)
Q Consensus 312 ~e~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~-~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~ 390 (1076)
.+.-++...+.++..++.++| +|.++|++.....|. +|..|+.++.+..+++.-.+-...+|+..++..|-.++.
T Consensus 488 ~deYVRnttarafavvasalg----ip~llpfLkavc~SkkSwqaRhTgIkivqqIail~Gcsvlphl~~lv~ii~~gl~ 563 (1172)
T KOG0213|consen 488 KDEYVRNTTARAFAVVASALG----IPALLPFLKAVCGSKKSWQARHTGIKIVQQIAILSGCSVLPHLKPLVKIIEHGLK 563 (1172)
T ss_pred ccHHHHHHHHHHHHHHHHHhC----cHHHHHHHHHHhccccchhhhchhhHHHHHHHHHhcchhhhhhHHHHHHHHHhhc
Confidence 112267778888999999988 577888888888776 899999999999999986655567999999999999999
Q ss_pred CCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHH
Q 001442 391 DPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKL 470 (1076)
Q Consensus 391 d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~aL~~l~~~~~~~~l~~~l~~ll~~l 470 (1076)
|.+..||..++.+++.+++...|.- ...++.++..|.+.++. .....-.+-+.|++.++..+.++.-.-|-..+|-.+
T Consensus 564 De~qkVR~itAlalsalaeaa~Pyg-ie~fDsVlkpLwkgir~-hrgk~laafLkAigyliplmd~eya~yyTrevmlil 641 (1172)
T KOG0213|consen 564 DEQQKVRTITALALSALAEAATPYG-IEQFDSVLKPLWKGIRQ-HRGKELAAFLKAIGYLIPLMDAEYASYYTREVMLIL 641 (1172)
T ss_pred ccchhhhhHHHHHHHHHHHhcCCcc-hHHHHHHHHHHHHHHHH-ccChHHHHHHHHHhhccccccHHHHHHhHHHHHHHH
Confidence 9999999999999999999887754 46788899999999987 455555677788888888887665444556888889
Q ss_pred HHHhhcCchhHHHHHHHHHHHHHHHhHhhHHhhH-hhhHHHHHHHHhccCCchhhhhHHHHHHHHHHHHHHhchhhhhhh
Q 001442 471 LVLLQNGKQMVQEGALTALASVADSSQEHFQKYY-DAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDD 549 (1076)
Q Consensus 471 ~~~l~~~~~~v~~~al~ai~~l~~~~~~~~~~~~-~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~g~~~~~~~ 549 (1076)
..-+++++.+.++.++..+..++...|-.= .|. ..++|.++..+......-++..-....++-..++..+|..
T Consensus 642 ~rEf~sPDeemkkivLKVv~qcc~t~Gv~~-~y~r~dilp~ff~~fw~rrmA~drr~ykqlv~ttv~ia~KvG~~----- 715 (1172)
T KOG0213|consen 642 IREFGSPDEEMKKIVLKVVKQCCATDGVEP-AYIRFDILPEFFFSFWGRRMALDRRNYKQLVDTTVEIAAKVGSD----- 715 (1172)
T ss_pred HHhhCCChHHHHHHHHHHHHHHhcccCCCH-HHHhhhhhHHHHhhhhhhhhhccccchhhHHHHHHHHHHHhCch-----
Confidence 999999999999999999999988766431 122 3456655555444222222222335667778888888843
Q ss_pred HHHHHHH-HHHHhcCCCCCCChhhHHHHHHHHHHHHHhcc-Ccccch-hhhhHHHHHhccCCCCccccCCCCCccccCCC
Q 001442 550 AKQVMEV-LMSLQGSQMETDDPTTSYMLQAWARLCKCLGQ-DFLPYM-SVVMPPLLQSAQLKPDVTITSADSDNEIEDSD 626 (1076)
Q Consensus 550 ~~~ii~~-l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~l-~~i~~~ll~~~~~~~~~~~~~~d~d~~~~~~d 626 (1076)
+++.- +..+.+ ..++.|.....+..++...+|. +|..-+ ...+..++.+++.+. .
T Consensus 716 --~~v~R~v~~lkd----e~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqt----------------t 773 (1172)
T KOG0213|consen 716 --PIVSRVVLDLKD----EPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQT----------------T 773 (1172)
T ss_pred --HHHHHHhhhhcc----ccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcc----------------c
Confidence 22222 222332 2344666666777777666664 343322 445555555554211 0
Q ss_pred CcccchhhcCCceeeecchhHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHhhhcccccCCHHHHHHHHHHHHHHHHHH
Q 001442 627 DDSMETITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSA 706 (1076)
Q Consensus 627 ~~~~~~~~~~~~~~~v~~~~~~~k~~A~~~l~~i~~~~~~~~~p~l~~~~~~l~~~l~~~~~~~vr~~a~~~l~~L~~~~ 706 (1076)
++ ..-+..++.+.+.++....||+++++..++..|++. ++.+|..|+.+++.+....
T Consensus 774 ~d----------------------~vml~gfg~V~~~lg~r~kpylpqi~stiL~rLnnk-sa~vRqqaadlis~la~Vl 830 (1172)
T KOG0213|consen 774 ED----------------------SVMLLGFGTVVNALGGRVKPYLPQICSTILWRLNNK-SAKVRQQAADLISSLAKVL 830 (1172)
T ss_pred ch----------------------hhhhhhHHHHHHHHhhccccchHHHHHHHHHHhcCC-ChhHHHHHHHHHHHHHHHH
Confidence 00 012445889999999999999999999999999874 8999999999999998877
Q ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHHHHHHH
Q 001442 707 KLAIEKGLAPGRNESYVKQLSDFIIPALVEALHKEPDTEICASMLDSLNECIQISGPL-LDEGQVRSIVDEIKQVITASS 785 (1076)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~l~~l~~~i~~~g~~-~~~~~~~~~~~~l~~~l~~~~ 785 (1076)
+.|-+ .+++..+--.|.+.+. +.++++...++.++..+....|-. +. .-+..++..+.++|++..
T Consensus 831 ktc~e------------e~~m~~lGvvLyEylg-eeypEvLgsILgAikaI~nvigm~km~-pPi~dllPrltPILknrh 896 (1172)
T KOG0213|consen 831 KTCGE------------EKLMGHLGVVLYEYLG-EEYPEVLGSILGAIKAIVNVIGMTKMT-PPIKDLLPRLTPILKNRH 896 (1172)
T ss_pred HhccH------------HHHHHHhhHHHHHhcC-cccHHHHHHHHHHHHHHHHhccccccC-CChhhhcccchHhhhhhH
Confidence 54411 1222222233456654 558999999999999999887743 22 235678888888888877
Q ss_pred HhHHHH-HH------hhcCCCCCh-Hhh----hhhhhhhhhHHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHhHhhhhc
Q 001442 786 SRKRER-AE------RAKAEDFDA-EES----ELIKEENEQEEEVFDQVGEILGTLIKTFKAAFLPFFDELSSYLTPMWG 853 (1076)
Q Consensus 786 ~~~~~~-~~------~~~~ed~d~-~~~----~~~~e~~e~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~ 853 (1076)
++.... .+ +.+.|-... |.. +.++--......++.++.+.+|.+++..|+.= ++..+++.|+
T Consensus 897 eKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~IakaIGPqd------VLatLlnnLk 970 (1172)
T KOG0213|consen 897 EKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIAKAIGPQD------VLATLLNNLK 970 (1172)
T ss_pred HHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhcCHHH------HHHHHHhcch
Confidence 654321 11 112222221 111 11111223456788899999999999998642 3444444442
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhhhhhHhhHHhHHHHHHhhccCCChhHHhhhhHHHHHHHhhcCCCchHHHHHHHHHHHH
Q 001442 854 KDKTAEERRIAICIFDDVAEQCREAALKYYETYLPFLLEACNDENQDVRQAAVYGLGVCAEFGGSVVKPLVGEALSRLNV 933 (1076)
Q Consensus 854 ~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~vr~~a~~~lg~l~~~~~~~~~~~~~~il~~L~~ 933 (1076)
...-..|.+.--.++-+.++||+. .++|.+++..+.++..|.+....++..+.++.++.-+.|+..+.+.|..
T Consensus 971 -vqeRq~RvcTtvaIaIVaE~c~pF------tVLPalmneYrtPe~nVQnGVLkalsf~FeyigemskdYiyav~PlleD 1043 (1172)
T KOG0213|consen 971 -VQERQNRVCTTVAIAIVAETCGPF------TVLPALMNEYRTPEANVQNGVLKALSFMFEYIGEMSKDYIYAVTPLLED 1043 (1172)
T ss_pred -HHHHHhchhhhhhhhhhhhhcCch------hhhHHHHhhccCchhHHHHhHHHHHHHHHHHHHHHhhhHHHHhhHHHHH
Confidence 211222333344566677888876 7899999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCChhhhhHHHHHHHHHHHHHhhcCCCCCHhhHHHHHHhhC-CCCCcHHHHHHHHHHHHHHHhhcCCcccCcCc
Q 001442 934 VIRHPNALQPENLMAYDNAVSALGKICQFHRDSIDAAQVVPAWLNCL-PIKGDLIEAKIVHEQLCSMVERSDSDLLGPNH 1012 (1076)
Q Consensus 934 ~l~~~~~~~~~~~~~~~na~~al~~i~~~~~~~~~~~~~l~~~l~~l-p~~~d~~e~~~~~~~l~~li~~~~~~~~~~~~ 1012 (1076)
.+.+. +..-|+.|++++.++...+++.-. ...+-.+|+.+ |. -++...++...+..-++.- ...+++
T Consensus 1044 AlmDr------D~vhRqta~~~I~Hl~Lg~~g~g~-eda~iHLLN~iWpN--Ile~sPhviqa~~e~~eg~-r~~Lg~-- 1111 (1172)
T KOG0213|consen 1044 ALMDR------DLVHRQTAMNVIKHLALGVPGTGC-EDALIHLLNLIWPN--ILETSPHVIQAFDEAMEGL-RVALGP-- 1111 (1172)
T ss_pred hhccc------cHHHHHHHHHHHHHHhcCCCCcCc-HHHHHHHHHHhhhh--hcCCChHHHHHHHHHHHHH-HHHhch--
Confidence 99875 357899999999999988766432 22222233322 21 1222333333333333211 224453
Q ss_pred CchhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHH
Q 001442 1013 QYLPKIVSVFAEILCGKDLATEQTLSRIVNLLKQLQ 1048 (1076)
Q Consensus 1013 ~~l~~i~~~~~~~l~~~~~~~~~~~~~~~~~l~~l~ 1048 (1076)
..+++.+.+.|-+. ....+...+..++.+-
T Consensus 1112 ---~~~~~Y~~QGLFHP---arkVR~~yw~vyn~my 1141 (1172)
T KOG0213|consen 1112 ---QAMLKYCLQGLFHP---ARKVRKRYWTVYNSMY 1141 (1172)
T ss_pred ---HHHHHHHHHhccCc---HHHHHHHHHHHHHhHh
Confidence 46777777777643 3446666666666554
No 15
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=99.95 E-value=1.8e-20 Score=195.50 Aligned_cols=660 Identities=14% Similarity=0.117 Sum_probs=442.6
Q ss_pred chhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhcCCC-hhHHHHHHHHHHHHHhhcH-HHHHHhHHHHHHHHHhhC--CC
Q 001442 316 NYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPE-WQKHHAALIALAQIAEGCA-KVMVKNLEQVLSMVLNSF--RD 391 (1076)
Q Consensus 316 ~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~-~~~r~aal~~l~~l~~~~~-~~~~~~l~~i~~~l~~~l--~d 391 (1076)
....|++++..++..--|...+|.++..+.....+.. ...+..++.++|.+++... +.+...-..++-.++.+- +.
T Consensus 110 ~~~~Aaql~aaIA~~Elp~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~Pe~li~~sN~il~aiv~ga~k~e 189 (858)
T COG5215 110 FCTMAAQLLAAIARMELPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAPEDLIQMSNVILFAIVMGALKNE 189 (858)
T ss_pred HHHHHHHHHHHHHHhhCccccchHHHHHHHHhccccCchHhHHHHHHHHHHHhhccCHHHHHHHhhHHHHHHHHhhcccC
Confidence 3467888999888754347888988888877776554 4678889999999988754 344445555655555543 34
Q ss_pred CChhHHHHHHHHHHHhhhhhchhHHhhh-hhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHH
Q 001442 392 PHPRVRWAAINAIGQLSTDLGPDLQNQF-HPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKL 470 (1076)
Q Consensus 392 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~-~~~ll~~l~~~l~~~~~~~v~~~a~~aL~~l~~~~~~~~l~~~l~~ll~~l 470 (1076)
+...||-+|+.||..-+.+.+..+..++ .+-++..++..-+. ++..++.+|+.+|.++..-.- +.+.+|++..+-.+
T Consensus 190 t~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceatq~-~d~e~q~aafgCl~kim~LyY-~fm~~ymE~aL~al 267 (858)
T COG5215 190 TTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEATQG-NDEELQHAAFGCLNKIMMLYY-KFMQSYMENALAAL 267 (858)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhccC-CcHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 6789999999999987666666653332 44566666777777 888999999999999875543 34677887665554
Q ss_pred -HHHhhcCchhHHHHHHHHHHHHHHHhHh-hH-HhhH---------------hhhHHHHHHHHhccC---CchhhhhHHH
Q 001442 471 -LVLLQNGKQMVQEGALTALASVADSSQE-HF-QKYY---------------DAVMPFLKAILVNAT---DKSNRMLRAK 529 (1076)
Q Consensus 471 -~~~l~~~~~~v~~~al~ai~~l~~~~~~-~~-~~~~---------------~~i~~~L~~~l~~~~---~~~~~~lr~~ 529 (1076)
...+.+++.++...+++-.++++..--+ ++ ..|+ ..++|.|.+++.+.. ..++|.....
T Consensus 268 t~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~sma 347 (858)
T COG5215 268 TGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMA 347 (858)
T ss_pred HHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhh
Confidence 4678889999999999888887753211 11 1233 358999999987732 2356777778
Q ss_pred HHHHHHHHHHHhchhhhhhhHHHHHHHHHHHhcCCCCCCChhhHHHHHHHHHHHHHhcc-CcccchhhhhHHHHHhccCC
Q 001442 530 SMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQ-DFLPYMSVVMPPLLQSAQLK 608 (1076)
Q Consensus 530 a~~~l~~i~~~~g~~~~~~~~~~ii~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~l~~i~~~ll~~~~~~ 608 (1076)
|-.|+..+++..|...+.| ++.++-+...+ .+..-|+...-+||++...-.+ ...+|+++.+|.+.+.+. |
T Consensus 348 A~sCLqlfaq~~gd~i~~p----Vl~FvEqni~~---~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~-D 419 (858)
T COG5215 348 ASSCLQLFAQLKGDKIMRP----VLGFVEQNIRS---ESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMS-D 419 (858)
T ss_pred HHHHHHHHHHHhhhHhHHH----HHHHHHHhccC---chhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcc-c
Confidence 8899999999998443334 55555442211 2334567777788877553222 266788888888776663 1
Q ss_pred CCccccCCCCCccccCCCCcccchhhcCCceeeecchhHHHHHHHHHHHHHHHHHhhhccccc--HHHHHHHhhhccccc
Q 001442 609 PDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPW--IDQVAPTLVPLLKFY 686 (1076)
Q Consensus 609 ~~~~~~~~d~d~~~~~~d~~~~~~~~~~~~~~~v~~~~~~~k~~A~~~l~~i~~~~~~~~~p~--l~~~~~~l~~~l~~~ 686 (1076)
+ + +..|..+.+|+|.++++....+.|. +.-.+......+.|
T Consensus 420 ~-----------------------------~-------l~vk~ttAwc~g~iad~va~~i~p~~Hl~~~vsa~liGl~D- 462 (858)
T COG5215 420 S-----------------------------C-------LWVKSTTAWCFGAIADHVAMIISPCGHLVLEVSASLIGLMD- 462 (858)
T ss_pred c-----------------------------e-------eehhhHHHHHHHHHHHHHHHhcCccccccHHHHHHHhhhhc-
Confidence 1 2 2346778899999999999988885 33344443333444
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHcc-CCcHHHHHHHHHHHHHHHHHhCCCC
Q 001442 687 FHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVEALHK-EPDTEICASMLDSLNECIQISGPLL 765 (1076)
Q Consensus 687 ~~~~vr~~a~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~-~~~~~~~~~~l~~l~~~i~~~g~~~ 765 (1076)
++.+-..+..+.-+|+..+..+.. ..+..+.+++..++..|++.-.. ..+...+...++++..++..+.
T Consensus 463 -~p~~~~ncsw~~~nlv~h~a~a~~------~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~--- 532 (858)
T COG5215 463 -CPFRSINCSWRKENLVDHIAKAVR------EVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILICP--- 532 (858)
T ss_pred -cchHHhhhHHHHHhHHHhhhhhhc------cccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcc---
Confidence 455555566666666655432211 11234555666677777766543 4567778889999999987765
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcCCCCChHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhchhhhHHHHH
Q 001442 766 DEGQVRSIVDEIKQVITASSSRKRERAERAKAEDFDAEESELIKEENEQEEEVFDQVGEILGTLIKTFKAAFLPFFDELS 845 (1076)
Q Consensus 766 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ed~d~~~~~~~~e~~e~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~ 845 (1076)
+.+.+++-.+.....++++. +-...++ -.+-+|. -.-+++....+.++.++++..|...-+.-++++
T Consensus 533 --d~V~~~~a~~~~~~~~kl~~---~isv~~q-~l~~eD~-------~~~~elqSN~~~vl~aiir~~~~~ie~v~D~lm 599 (858)
T COG5215 533 --DAVSDILAGFYDYTSKKLDE---CISVLGQ-ILATEDQ-------LLVEELQSNYIGVLEAIIRTRRRDIEDVEDQLM 599 (858)
T ss_pred --hhHHHHHHHHHHHHHHHHHH---HHHHhhh-hhhhHHH-------HHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHH
Confidence 33444444443333333321 1110000 0111111 123567888999999999999999888888899
Q ss_pred HhHhhhhcCCCCHHHHHHHHHHHHHHHHHhhhhhHhhHHhHHHHHHhhccCCChhHHhhhhHHHHHHHhhcCCCchHHHH
Q 001442 846 SYLTPMWGKDKTAEERRIAICIFDDVAEQCREAALKYYETYLPFLLEACNDENQDVRQAAVYGLGVCAEFGGSVVKPLVG 925 (1076)
Q Consensus 846 ~~l~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~vr~~a~~~lg~l~~~~~~~~~~~~~ 925 (1076)
..++..+++.++.......+..++.+...+++.+..|.+.++|.+.+.++..+..|...|+..+|.++...+..|.+|..
T Consensus 600 ~Lf~r~les~~~t~~~~dV~~aIsal~~sl~e~Fe~y~~~fiPyl~~aln~~d~~v~~~avglvgdlantl~~df~~y~d 679 (858)
T COG5215 600 ELFIRILESTKPTTAFGDVYTAISALSTSLEERFEQYASKFIPYLTRALNCTDRFVLNSAVGLVGDLANTLGTDFNIYAD 679 (858)
T ss_pred HHHHHHHhccCCchhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 98888886655555566778889999999999999999999999999999899999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCCCChhhhhHHHHHHHHHHHHHhhcCCCC--CHhhHHHHHHhhC--CCCCcHHH----HHHHHH---
Q 001442 926 EALSRLNVVIRHPNALQPENLMAYDNAVSALGKICQFHRDSI--DAAQVVPAWLNCL--PIKGDLIE----AKIVHE--- 994 (1076)
Q Consensus 926 ~il~~L~~~l~~~~~~~~~~~~~~~na~~al~~i~~~~~~~~--~~~~~l~~~l~~l--p~~~d~~e----~~~~~~--- 994 (1076)
.++..|.+.++++.. .+.++-.+.+++|.|...-+.++ +++.++-.+-+.- ...+|.-+ ...+..
T Consensus 680 ~~ms~LvQ~lss~~~----~R~lKPaiLSvFgDIAlaiga~F~~YL~~im~L~qqas~~~p~~~~~~~~dy~~~~~~~v~ 755 (858)
T COG5215 680 VLMSSLVQCLSSEAT----HRDLKPAILSVFGDIALAIGANFESYLDMIMMLFQQASELDPHSDEVYVDDYRKNAVQLVN 755 (858)
T ss_pred HHHHHHHHHhcChhh----ccccchHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCCceeHHHHHHHHHHHHH
Confidence 999999999988753 45788889999999999988877 5777665544432 11122211 112211
Q ss_pred -HHHHHHhhcC--CcccCcCcCchhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhCCh
Q 001442 995 -QLCSMVERSD--SDLLGPNHQYLPKIVSVFAEILCGKDLATEQTLSRIVNLLKQLQQTLPP 1053 (1076)
Q Consensus 995 -~l~~li~~~~--~~~~~~~~~~l~~i~~~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~ 1053 (1076)
....+.+..+ +..+.| ++..|...+..+-. +...++..-+.+..++..+...||+
T Consensus 756 ~ayVgI~~~~~nr~~~v~P---yv~sif~~i~~iae-Dp~~se~~traalGLigDla~mfpk 813 (858)
T COG5215 756 CAYVGIGDSSKNRVRSVLP---YVISIFHKIGMIAE-DPNGSEAHTRAALGLIGDLAGMFPK 813 (858)
T ss_pred HHHHHhhhhhhhhHHHhhh---HHHHHHHHHHHhhc-CCccchhHHHHHHHHHHHHHHhCCC
Confidence 1222222222 332222 44444555544443 3223556667899999999999995
No 16
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=99.92 E-value=3.9e-21 Score=201.87 Aligned_cols=740 Identities=15% Similarity=0.151 Sum_probs=480.5
Q ss_pred hhcCCCHHHHHHHHHHHHHHHHHHHHhhCCcchHhHHhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccCcHHHHH
Q 001442 151 CVSSDSVKLQESAFLIFAQLIINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRR 230 (1076)
Q Consensus 151 ~~~~~~~~~r~~al~~L~~l~~~~~~~l~~~~~~~~~~~l~p~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 230 (1076)
..++++...|..++++|..-..++ .....|..++|.+|..- + +...+......+..+.....+...|
T Consensus 176 kvKNG~~~mR~~~lRiLtdkav~f-------g~~~vfnkvLp~lm~r~---L---eDqerhl~vk~idr~Ly~lddl~~p 242 (975)
T COG5181 176 KVKNGGKRMRMEGLRILTDKAVNF-------GAAAVFNKVLPMLMSRE---L---EDQERHLVVKLIDRLLYGLDDLKVP 242 (975)
T ss_pred hcccCCchhhHHHHHHHHHHhhcc-------cHHHHHHHHHHHHHhhh---h---hhhhhHhHHHHHHHHHHhccccccc
Confidence 457788888888988884432111 12345566666666532 1 3345666667777766665666667
Q ss_pred hHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHhhcccchhhccchhhHHHHHHHHHHhhcCCCCCccccCCCCCCcc
Q 001442 231 QLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDED 310 (1076)
Q Consensus 231 ~l~~l~~~l~~~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~dd~~~~~~~~e~~d 310 (1076)
|.+.|+-..-..+- +.+...|...-|.+.+++.. +. +...+ ..| .++..
T Consensus 243 yvhkILvVv~plli--ded~~~r~~g~eii~nL~~~---~G-----l~~~v--------s~m-----rpDi~-------- 291 (975)
T COG5181 243 YVHKILVVVGPLLI--DEDLKRRCMGREIILNLVYR---CG-----LGFSV--------SSM-----RPDIT-------- 291 (975)
T ss_pred ceeeEEEEeecccc--CccHHHhcccHHHHHHHHHH---hc-----cceee--------eec-----cCCcc--------
Confidence 76655432222221 23455666667777777662 11 11110 111 01110
Q ss_pred cCCCCchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhC
Q 001442 311 AGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAP-EWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSF 389 (1076)
Q Consensus 311 ~~e~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~-~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l 389 (1076)
..+.-++.....+...++.++| ++.++|++.....|. +|+.|+.++.+..++++-.+-...+|+..++..|-.++
T Consensus 292 ~~deYVRnvt~ra~~vva~alg----v~~llpfl~a~c~SrkSw~aRhTgiri~qqI~~llG~s~l~hl~~l~~ci~~~l 367 (975)
T COG5181 292 SKDEYVRNVTGRAVGVVADALG----VEELLPFLEALCGSRKSWEARHTGIRIAQQICELLGRSRLSHLGPLLKCISKLL 367 (975)
T ss_pred cccHHHHHHHHHHHHHHHHhhC----cHHHHHHHHHHhcCccchhhhchhhHHHHHHHHHhCccHHhhhhhHHHHHHHHh
Confidence 0111256777888899998888 466777887777765 89999999999999998776666789999999999999
Q ss_pred CCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHH
Q 001442 390 RDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSK 469 (1076)
Q Consensus 390 ~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~aL~~l~~~~~~~~l~~~l~~ll~~ 469 (1076)
.|.+..||-.++.+++.+++..+|.- ...++.++..|.+..+. ....+-.+-..|.+.++.-++++...-|-...+..
T Consensus 368 ~D~~~~vRi~tA~alS~lae~~~Pyg-ie~fd~vl~pLw~g~~~-hrgk~l~sfLkA~g~iiplm~peYa~h~tre~m~i 445 (975)
T COG5181 368 KDRSRFVRIDTANALSYLAELVGPYG-IEQFDEVLCPLWEGASQ-HRGKELVSFLKAMGFIIPLMSPEYACHDTREHMEI 445 (975)
T ss_pred hccceeeeehhHhHHHHHHHhcCCcc-hHHHHHHHHHHHHHHHh-cCCchHHHHHHHhccccccCChHhhhhhHHHHHHH
Confidence 99999999999999999999887754 46778888888888876 44444456667777777777777666667789999
Q ss_pred HHHHhhcCchhHHHHHHHHHHHHHHHhHhhHHhhHhhhHHHHHHHHhccCCchhhhhHHHHHHHHHHHHHHhchhhhhhh
Q 001442 470 LLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDD 549 (1076)
Q Consensus 470 l~~~l~~~~~~v~~~al~ai~~l~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~g~~~~~~~ 549 (1076)
++..+++++.+.++..+.........-+..=..|.+++.|.+++.+.......++..-.....+-..+++..|.
T Consensus 446 v~ref~spdeemkk~~l~v~~~C~~v~~~tp~~lr~~v~pefF~~fw~rr~A~dr~~~k~v~~ttvilAk~~g~------ 519 (975)
T COG5181 446 VFREFKSPDEEMKKDLLVVERICDKVGTDTPWKLRDQVSPEFFSPFWRRRSAGDRRSYKQVVLTTVILAKMGGD------ 519 (975)
T ss_pred HHHHhCCchhhcchhHHHHHHHHhccCCCCHHHHHHhhcHHhhchHHHhhhcccccccceeehhHHHHHHHcCC------
Confidence 99999999988877666655554443333323466889998887766532222232233344555566666662
Q ss_pred HHHHHHHHHHHhcCCCCCCChhhHHHHHHHHHHHHHhcc-Ccccch-hhhhHHHHHhccCCCCccccCCCCCccccCCCC
Q 001442 550 AKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQ-DFLPYM-SVVMPPLLQSAQLKPDVTITSADSDNEIEDSDD 627 (1076)
Q Consensus 550 ~~~ii~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~l-~~i~~~ll~~~~~~~~~~~~~~d~d~~~~~~d~ 627 (1076)
+.+..-+++.... ..++.|.....+..++...+|. +|..-+ ...+..++.+++.+.. .
T Consensus 520 -~~v~~kil~~~~D---e~ep~r~m~a~~vsri~~~lg~~~~dErleerl~d~il~Afqeq~~----------------t 579 (975)
T COG5181 520 -PRVSRKILEYYSD---EPEPYRKMNAGLVSRIFSRLGRLGFDERLEERLYDSILNAFQEQDT----------------T 579 (975)
T ss_pred -hHHHHHHHhhccC---CcchhhhhhhHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhccc----------------c
Confidence 2344555543332 2455666556666666666654 344333 3345555655542110 0
Q ss_pred cccchhhcCCceeeecchhHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHhhhcccccCCHHHHHHHHHHHHHHHHHHH
Q 001442 628 DSMETITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAK 707 (1076)
Q Consensus 628 ~~~~~~~~~~~~~~v~~~~~~~k~~A~~~l~~i~~~~~~~~~p~l~~~~~~l~~~l~~~~~~~vr~~a~~~l~~L~~~~~ 707 (1076)
++ + -+.+++.+..+++....||++.++..++++|.+. .+++|..|+.+++.|....+
T Consensus 580 ~~---~-------------------il~~f~tv~vsl~~r~kp~l~~ivStiL~~L~~k-~p~vR~~aadl~~sl~~vlk 636 (975)
T COG5181 580 VG---L-------------------ILPCFSTVLVSLEFRGKPHLSMIVSTILKLLRSK-PPDVRIRAADLMGSLAKVLK 636 (975)
T ss_pred cc---E-------------------EEecccceeeehhhccCcchHHHHHHHHHHhcCC-CccHHHHHHHHHHHHHHHHH
Confidence 00 0 0122444445556668899999999999999874 79999999999999988775
Q ss_pred HHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHHHHHHHH
Q 001442 708 LAIEKGLAPGRNESYVKQLSDFIIPALVEALHKEPDTEICASMLDSLNECIQISGPL-LDEGQVRSIVDEIKQVITASSS 786 (1076)
Q Consensus 708 ~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~l~~l~~~i~~~g~~-~~~~~~~~~~~~l~~~l~~~~~ 786 (1076)
.|-+ ...+..+=-.|.+.+. +.++++...++.++..+....+-. +. .-+..+++.+.++|.++.+
T Consensus 637 ~c~e------------~~~l~klg~iLyE~lg-e~ypEvLgsil~Ai~~I~sv~~~~~mq-pPi~~ilP~ltPILrnkh~ 702 (975)
T COG5181 637 ACGE------------TKELAKLGNILYENLG-EDYPEVLGSILKAICSIYSVHRFRSMQ-PPISGILPSLTPILRNKHQ 702 (975)
T ss_pred hcch------------HHHHHHHhHHHHHhcC-cccHHHHHHHHHHHHHHhhhhcccccC-CchhhccccccHhhhhhhH
Confidence 4411 1112222223445554 568999999999998887766531 22 2356677888888877643
Q ss_pred hHHHHHHhhcCCCCChHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhchhh-hHHHHHHhHhhhhcCCCCHHHHHHHH
Q 001442 787 RKRERAERAKAEDFDAEESELIKEENEQEEEVFDQVGEILGTLIKTFKAAFLP-FFDELSSYLTPMWGKDKTAEERRIAI 865 (1076)
Q Consensus 787 ~~~~~~~~~~~ed~d~~~~~~~~e~~e~~~~~~~~~~~~l~~l~~~~~~~~~~-~~~~l~~~l~~~l~~~~~~~~r~~al 865 (1076)
.+......++|.++...++...+ -+..++--++..| ++.+-+.|..|.
T Consensus 703 ------------------------------Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~L-ks~nKeiRR~A~ 751 (975)
T COG5181 703 ------------------------------KVVANTIALVGTICMNSPEYIGVREWMRICFELVDSL-KSWNKEIRRNAT 751 (975)
T ss_pred ------------------------------HHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHH-HHhhHHHHHhhh
Confidence 23445678889888877764332 2334555556666 456678899999
Q ss_pred HHHHHHHHHhhhhhHhhHHhHHHHHHhhccCCChhHHhhhhHHHHHHHhhcCCCchHHHHHHHHHHHHhhcCCCCCChhh
Q 001442 866 CIFDDVAEQCREAALKYYETYLPFLLEACNDENQDVRQAAVYGLGVCAEFGGSVVKPLVGEALSRLNVVIRHPNALQPEN 945 (1076)
Q Consensus 866 ~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~vr~~a~~~lg~l~~~~~~~~~~~~~~il~~L~~~l~~~~~~~~~~ 945 (1076)
.++|.+.+..|++ .++.+++++++..+..-|-...-++|..++.++.- .+++.|..-...| +
T Consensus 752 ~tfG~Is~aiGPq------dvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgpf------sVlP~lm~dY~TP------e 813 (975)
T COG5181 752 ETFGCISRAIGPQ------DVLDILLNNLKVQERQQRVCTSVAISIVAEYCGPF------SVLPTLMSDYETP------E 813 (975)
T ss_pred hhhhhHHhhcCHH------HHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCch------hhHHHHHhcccCc------h
Confidence 9999999999996 88999999999999888988999999999999852 3566666555555 3
Q ss_pred hhHHHHHHHHHHHHHhhcCCCC--CHhhHHHHHHhhCCCCCcHHHHHHHHHHHHHHHhhcCCcccCcCcCchhhHHHH--
Q 001442 946 LMAYDNAVSALGKICQFHRDSI--DAAQVVPAWLNCLPIKGDLIEAKIVHEQLCSMVERSDSDLLGPNHQYLPKIVSV-- 1021 (1076)
Q Consensus 946 ~~~~~na~~al~~i~~~~~~~~--~~~~~l~~~l~~lp~~~d~~e~~~~~~~l~~li~~~~~~~~~~~~~~l~~i~~~-- 1021 (1076)
..+...+..+++.+-.+-++.- ++-.+.|.+-++|-. .|..-...+...+-.|+ .++|. .+ +.+..+..
T Consensus 814 ~nVQnGvLkam~fmFeyig~~s~dYvy~itPlleDAltD-rD~vhRqta~nvI~Hl~-Lnc~g-tg----~eda~IHLlN 886 (975)
T COG5181 814 ANVQNGVLKAMCFMFEYIGQASLDYVYSITPLLEDALTD-RDPVHRQTAMNVIRHLV-LNCPG-TG----DEDAAIHLLN 886 (975)
T ss_pred hHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcc-cchHHHHHHHHHHHHHh-cCCCC-cc----cHHHHHHHHH
Confidence 4677778889999988866653 466677777777754 35444444444444444 44333 23 23322222
Q ss_pred --HHHHhcCCCCCCHHHHHHHHHHHHHHHhhCC-hhhHHHHHhcC
Q 001442 1022 --FAEILCGKDLATEQTLSRIVNLLKQLQQTLP-PATLASTWSSL 1063 (1076)
Q Consensus 1022 --~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~-~~~~~~~~~~l 1063 (1076)
+..++. +++-..+++-+-+.++.+..+ +..+.=+|++|
T Consensus 887 llwpNIle----~sPhvi~~~~Eg~e~~~~~lg~g~~m~Yv~qGL 927 (975)
T COG5181 887 LLWPNILE----PSPHVIQSFDEGMESFATVLGSGAMMKYVQQGL 927 (975)
T ss_pred HhhhhccC----CCcHHHHHHHHHHHHHHHHhccHHHHHHHHHhc
Confidence 334443 245577788888888888776 45455566666
No 17
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=7e-18 Score=181.92 Aligned_cols=473 Identities=15% Similarity=0.146 Sum_probs=303.1
Q ss_pred hHHHHHHHHHhcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHcc-CCCHHHHHHHHHHHHHhcccCCCCcccC----
Q 001442 21 SAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQR-SPHPEARAMAAVLLRKLLTRDDSFLWPR---- 95 (1076)
Q Consensus 21 ~~~l~~lL~~~~s~d~~~r~~Ae~~L~~~~~~~p~~~~~~L~~il~~-~~~~~~R~~a~v~Lk~~i~~~~~~~w~~---- 95 (1076)
.+++.|...++++.|..+|+.||+.|+++.+ +|+ |+.++++++.+ ..++.+|+.|++++||+|.+. |..
T Consensus 2 ~~ellqcf~qTldada~~rt~AE~~Lk~leK-qPg-Fv~all~i~s~de~~lnvklsAaIYfKNkI~rs----Wss~~d~ 75 (970)
T COG5656 2 REELLQCFLQTLDADAGKRTIAEAMLKDLEK-QPG-FVMALLHICSKDEGDLNVKLSAAIYFKNKIIRS----WSSKRDD 75 (970)
T ss_pred hHHHHHHHHHHhccCcchhhHHHHHHHHhhc-CCc-HHHHHHHHHhhccCCchhhHHHHHHHhhhhhhh----hhhcccC
Confidence 5688999999999999999999999999999 787 78999999987 478999999999999999998 875
Q ss_pred -----CCHhHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhcccCCCCcchhHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 001442 96 -----LSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQL 170 (1076)
Q Consensus 96 -----l~~~~~~~lk~~Ll~~l~~~~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~~~~~~~r~~al~~L~~l 170 (1076)
-.++.|+.+++.++..+.. .+...|...-.++..|...++|...|+ +.|.....+.+++....-.|+.++..+
T Consensus 76 ~i~~Dek~e~K~~lienil~v~l~-sp~~tr~~l~ail~~I~seD~ps~~wg-l~p~~~nll~s~ea~~vy~gLlcl~el 153 (970)
T COG5656 76 GIKADEKSEAKKYLIENILDVFLY-SPEVTRTALNAILVNIFSEDKPSDLWG-LFPKAANLLRSSEANHVYTGLLCLEEL 153 (970)
T ss_pred CCCCcccHHHHHHHHHHHHHHHhc-CCchHHHHHHHHHHHhccccCchhhcc-cchHHHHhhcccchhHHHHHHHHHHHH
Confidence 2345555555555555542 344456666667777778889988999 999999999999999999999999888
Q ss_pred HHH-------------------------HHHhhCCcc----------------------------hHhHHhhhHHHHHHH
Q 001442 171 IIN-------------------------FIQCLTSSA----------------------------DRDRFQDLLPLMMRT 197 (1076)
Q Consensus 171 ~~~-------------------------~~~~l~~~~----------------------------~~~~~~~l~p~~l~~ 197 (1076)
+.. +-+++.... ....|..++...+..
T Consensus 154 fkayRwk~ndeq~di~~li~alfpile~~g~nl~s~~ny~s~e~l~LILk~fKsvcy~~LP~~lsa~e~f~sw~ql~l~i 233 (970)
T COG5656 154 FKAYRWKYNDEQVDILMLITALFPILEKVGGNLESQGNYGSVETLMLILKSFKSVCYYSLPDFLSAIETFSSWFQLSLRI 233 (970)
T ss_pred HHHHhhhccchHhhHHHHHHHhhHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHhhCCHHHccchhhHHHHHHHHHH
Confidence 211 111111100 011111222222222
Q ss_pred HHHHHh----CCCHHH---------HHHHHHHHHHHHccCcHHH------------HHhHHHHHHHHHHHh---cCCC--
Q 001442 198 LTESLN----NGNEAT---------AQEALELLIELAGTEPRFL------------RRQLVDVVGSMLQIA---EAES-- 247 (1076)
Q Consensus 198 l~~~~~----~~~~~~---------~~~~~~~l~~l~~~~~~~~------------~~~l~~l~~~l~~~~---~~~~-- 247 (1076)
+.+-+. +-|+++ .+.++..+.++...+.+.. ...++.+++..++.. ++..
T Consensus 234 ~qkplp~evlsldpevRs~~~wvKckKWa~ynLyR~fqRy~k~s~~~~y~~f~~~f~t~vp~il~tffkqie~wgqgqLW 313 (970)
T COG5656 234 LQKPLPNEVLSLDPEVRSLSKWVKCKKWAAYNLYRSFQRYIKKSYKKSYLSFYITFMTRVPMILATFFKQIEEWGQGQLW 313 (970)
T ss_pred HcCCCCHHHhccChhhccccchhhhhHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCee
Confidence 221110 113333 3456777777666553221 123444444444433 1211
Q ss_pred cchhHHHHHHHHHHHHHHhhcccchhhccchhhHHHHHH-HHHHhhcCCCC-CccccCCCCC------CcccCCCCchhh
Q 001442 248 LEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFA-ILMSMLLDIED-DPLWHSAETE------DEDAGESSNYSV 319 (1076)
Q Consensus 248 ~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~l~~-~l~~~l~~~~d-d~~~~~~~~e------~~d~~e~~~~~~ 319 (1076)
.++. ....+.+....|. .....++...|++.-++. +++.++.-.++ .+.|..+.+| |--++..++.-+
T Consensus 314 lsd~-~LYfi~~Fve~cv---~~d~tw~l~ePhlq~ii~~vIfPllc~see~eElfEnDp~eyirry~df~d~g~spdla 389 (970)
T COG5656 314 LSDI-ELYFIDFFVELCV---DADQTWRLMEPHLQYIISGVIFPLLCLSEEEEELFENDPDEYIRRYYDFFDNGLSPDLA 389 (970)
T ss_pred cchH-HHHHHHHHHHHHh---hhHhhHhhhccHHHHHHHhhhhhhcCCChhhHHHHhcCHHHHHHHhcchhcCCCChhHH
Confidence 2222 2233333333332 123355556666655543 33444433322 2234333222 101222333345
Q ss_pred HHHHHHHHHHHcCCCcchHHHHHHHHHhhc-----C---CChhHHHHHHHHHHHHHhhc--HHHHHHhHHH-HHHHHHhh
Q 001442 320 GQECLDRLAIALGGNTIVPVASEQLPAYLA-----A---PEWQKHHAALIALAQIAEGC--AKVMVKNLEQ-VLSMVLNS 388 (1076)
Q Consensus 320 a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-----~---~~~~~r~aal~~l~~l~~~~--~~~~~~~l~~-i~~~l~~~ 388 (1076)
|..++-.++..-+ +..+..+++++...+. + .+.+..++|+..++.+..-. .......+.. +++.+.+.
T Consensus 390 al~fl~~~~sKrk-e~TfqgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~ 468 (970)
T COG5656 390 ALFFLIISKSKRK-EETFQGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPA 468 (970)
T ss_pred HHHHHHHHhcccc-hhhhhhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHh
Confidence 5556655555554 6667777777776662 1 35778899999999987722 2223333443 57888999
Q ss_pred CCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCC-cccccCchHHHH
Q 001442 389 FRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCT-PEILTPYLDGIV 467 (1076)
Q Consensus 389 l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~aL~~l~~~~~-~~~l~~~l~~ll 467 (1076)
++++--.+|..||..++.+.+.++.. ....++.....+++.+ .+-.|+..|..|+..|+.+.. .+.+..+.+..|
T Consensus 469 f~s~ygfL~Srace~is~~eeDfkd~---~ill~aye~t~ncl~n-n~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tm 544 (970)
T COG5656 469 FRSNYGFLKSRACEFISTIEEDFKDN---GILLEAYENTHNCLKN-NHLPVMIEAALALQFFIFNEQSHEKFSAHVPETM 544 (970)
T ss_pred hcCcccchHHHHHHHHHHHHHhcccc---hHHHHHHHHHHHHHhc-CCcchhhhHHHHHHHHHhchhhhHHHHhhhhHHH
Confidence 99999999999999999998777652 3566778888889988 788899999999999986642 133677889999
Q ss_pred HHHHHHhhcCchhHHHHHHHHHHHHHHHhHhhHHhhHhhhHHHHHH
Q 001442 468 SKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKA 513 (1076)
Q Consensus 468 ~~l~~~l~~~~~~v~~~al~ai~~l~~~~~~~~~~~~~~i~~~L~~ 513 (1076)
+.|+.+-+.-+.++. -.++..++...++++.||.+.++..|.+
T Consensus 545 ekLLsLSn~feiD~L---S~vMe~fVe~fseELspfa~eLa~~Lv~ 587 (970)
T COG5656 545 EKLLSLSNTFEIDPL---SMVMESFVEYFSEELSPFAPELAGSLVR 587 (970)
T ss_pred HHHHHhcccccchHH---HHHHHHHHHHhHHhhchhHHHHHHHHHH
Confidence 999988777665443 3455666777777777887777766655
No 18
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=1.6e-15 Score=167.81 Aligned_cols=564 Identities=17% Similarity=0.232 Sum_probs=357.7
Q ss_pred ChHHHHHHHHHhcCC-ChHHHHHHHHHHHHhhhcCchHHHHHHHHHHccCCCHHHHHHHHHHHHHhcccCCCCcccCCCH
Q 001442 20 DSAPFETLISHLMST-SNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSL 98 (1076)
Q Consensus 20 ~~~~l~~lL~~~~s~-d~~~r~~Ae~~L~~~~~~~p~~~~~~L~~il~~~~~~~~R~~a~v~Lk~~i~~~~~~~w~~l~~ 98 (1076)
+.+.++.++..++++ +.+....++++|+.... .|.+| .+-.++++.+..+++|.++|+.|.-+|+++ |...++
T Consensus 5 ~Ia~v~~~v~~lY~~~~~~~~a~~qk~Lq~aq~-S~Q~w-~~s~~llQ~~k~~evqyFGAltL~~ki~~~----~e~~~~ 78 (982)
T KOG2022|consen 5 LIATVEELVTTLYSHRNHENDAITQKWLQDAQC-SQQGW-HFSWQLLQPDKSSEVQYFGALTLHDKINTR----WEECPA 78 (982)
T ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHh-hHHHH-HHHHHHcCCCchhHHHHHhHHHHHHHHHhh----hccCCh
Confidence 467888999999887 67778888899998887 46665 667777887888999999999999999998 999999
Q ss_pred hHHHHHHHHHHHHHhh--cchhhHHHHHHHHHHHHHhcccCCCCcchhHHHHHHhhcCCC-H----HHH-HHHHHHHHHH
Q 001442 99 HTQSSLKSMLLQSIQL--ESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDS-V----KLQ-ESAFLIFAQL 170 (1076)
Q Consensus 99 ~~~~~lk~~Ll~~l~~--~~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~~~~-~----~~r-~~al~~L~~l 170 (1076)
+...+++..++..+.. .....|-+++|..++.+.-+..| +.||+-+..+.+.++... + .++ ..-+..|..+
T Consensus 79 ~~~~qL~~klf~~l~~~~g~~~lVl~kl~~sLasl~l~~~~-d~Wp~ai~~vi~~l~~q~~p~v~ad~n~~~~Le~Ls~~ 157 (982)
T KOG2022|consen 79 NEAVQLKLKLFLILSRFAGGPKLVLNKLCASLASLILYMVP-DLWPTAIQDVIPTLQGQASPLVLADINCEILLEVLSFM 157 (982)
T ss_pred hHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHcc-ccCCchHHHHHHHHhcccCccccchhhHHHHHHHhccC
Confidence 9999999999987754 23566888888888888888877 699998888777765421 1 111 1111111100
Q ss_pred ----------------------------------------------------------HHHHHHhhCC------------
Q 001442 171 ----------------------------------------------------------IINFIQCLTS------------ 180 (1076)
Q Consensus 171 ----------------------------------------------------------~~~~~~~l~~------------ 180 (1076)
+...++++.-
T Consensus 158 p~e~q~~~l~~t~~~~l~~eLak~~~~v~~l~e~vlr~~~n~t~s~~~~i~~~~a~dCv~~Wi~~i~~~~~~c~~i~~~l 237 (982)
T KOG2022|consen 158 PAEFQHVTLPLTRRSVLRGELAKFSENVISLLEVVLRGGSNSTSSLINLIFKQAAVDCVEQWIRYISLTGMDCDQITQVL 237 (982)
T ss_pred cHhhhhccchhHHHHHHHHHHHHHHHHHhHHHHHHHhccccccHHHHHHHhhhHHHHHHHHHHHHhccccccHHHHHHHH
Confidence 0000110000
Q ss_pred ----------------------------cc---------------hHhHHhhhHHHHHHHHH------HHHhCCC--HHH
Q 001442 181 ----------------------------SA---------------DRDRFQDLLPLMMRTLT------ESLNNGN--EAT 209 (1076)
Q Consensus 181 ----------------------------~~---------------~~~~~~~l~p~~l~~l~------~~~~~~~--~~~ 209 (1076)
.. ..+....+++.++..+. +..+++| ++.
T Consensus 238 l~~l~~s~~~~~~a~~~cmt~~~n~la~~~l~~~v~~i~q~d~~~y~nti~~li~i~~~~l~e~~~~~~~~e~~d~~~e~ 317 (982)
T KOG2022|consen 238 LDVLGQSTEGSYEAAEKCMTIFGNVLADDTLLASVNDIIQPDCEFYRNTITLLISICLGILQEVSGKIQEEENADASEEE 317 (982)
T ss_pred HHHHhhhccccccchhhhcccchhhhccchHHHHHHHhcChHHHhccchHHHHHHHHHHHHHHHHHHHHHHhCCCchhHH
Confidence 00 00001112222222221 2223344 445
Q ss_pred HHHHHHHHHHHHccCcHHHHHhH---------HHHHHHHHHHhcCCC---cchhHHHHHHHHHHHHHHhh------cccc
Q 001442 210 AQEALELLIELAGTEPRFLRRQL---------VDVVGSMLQIAEAES---LEEGTRHLAIEFVITLAEAR------ERAP 271 (1076)
Q Consensus 210 ~~~~~~~l~~l~~~~~~~~~~~l---------~~l~~~l~~~~~~~~---~~~~~r~~al~~l~~l~~~~------~~~~ 271 (1076)
....+.+....++++...+..+. ..++..++..++-+. .++.+...++.||.++.+.- ...+
T Consensus 318 i~~~~~i~v~~~En~l~~lid~~~~g~~~e~v~rlv~vll~~t~~PG~ypveE~~S~~~l~FW~tL~dei~~~~~e~~~~ 397 (982)
T KOG2022|consen 318 IVTFLAITVSSVENHLPTLIDCAAQGEQSELVIRLVQVLLVLTNFPGQYPVEEIVSDRTLIFWYTLQDEIMQTINETQQI 397 (982)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHhhcchHHHHHHHHHHHHHHhCCCCCccHHHHHhHHHHHHHHHHHHHHHHhhhccCCc
Confidence 55566666677776655444433 355555555554332 46778888999999998741 0111
Q ss_pred hhhccchhhHHHHHHHHHHhhcCCCCCc--cccCCCCCCcccCCCC-chhhHHHHHHHHHHHcCCCcchHHHHHHHHHhh
Q 001442 272 GMMRKLPQFINRLFAILMSMLLDIEDDP--LWHSAETEDEDAGESS-NYSVGQECLDRLAIALGGNTIVPVASEQLPAYL 348 (1076)
Q Consensus 272 ~~~~~~~~~~~~l~~~l~~~l~~~~dd~--~~~~~~~e~~d~~e~~-~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l 348 (1076)
.-.....+...+++..++..+.-+.+.. .|.+++.| ++. .|+.-.+++...=..+| +.++..+...+.+++
T Consensus 398 ~~~i~~~qIy~qlvei~l~K~~~Ps~e~~~~W~S~s~e-----~F~~YR~diSD~~~~~Y~ilg-d~ll~~L~~~l~q~~ 471 (982)
T KOG2022|consen 398 KKQILSQQIYAQLVEILLKKLALPSKEIWLSWSSDSRE-----QFESYRKDISDLLMSSYSILG-DGLLDFLIDTLEQAL 471 (982)
T ss_pred chhHHHHHHHHHHHHHHHHHhcCCCHHHhccCCcchHH-----HHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHhh
Confidence 0000112555677888888877664321 34433222 222 23334445544445566 677888888888888
Q ss_pred cCCC-----hhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhh-CCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhh
Q 001442 349 AAPE-----WQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNS-FRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQ 422 (1076)
Q Consensus 349 ~~~~-----~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~-l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ 422 (1076)
.+.+ |..-++.++.+..++++.++...+.++.++...... +.-.++..-..+...+|.++.+++.+. .|++.
T Consensus 472 aa~d~~p~s~~~tEaci~~~~sva~~~~~t~~~~i~rl~~~~asik~S~~n~ql~~Tss~~igs~s~~l~e~P--~~ln~ 549 (982)
T KOG2022|consen 472 AAGDEDPDSLNRTEACIFQFQSVAEYLGETESTWIPRLFETSASIKLSAPNPQLLSTSSDLIGSLSNWLGEHP--MYLNP 549 (982)
T ss_pred hccCCCchHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHhccccccccCChhHHHHHHHHHHHHHHHHhcCC--cccCc
Confidence 7655 999999999999999998876667777766654432 344588899999999999999998764 68999
Q ss_pred hHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcC--chhHHHHHHHHHHHHHHHhH-hh
Q 001442 423 VLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNG--KQMVQEGALTALASVADSSQ-EH 499 (1076)
Q Consensus 423 ll~~l~~~l~~~~~~~v~~~a~~aL~~l~~~~~~~~l~~~l~~ll~~l~~~l~~~--~~~v~~~al~ai~~l~~~~~-~~ 499 (1076)
.+|.|+++|+. +..-..+...|..+|+.+..+ +.||.++++..+-..+... ....|..++.+||.+..... ++
T Consensus 550 sl~~L~~~Lh~---sk~s~q~i~tl~tlC~~C~~~-L~py~d~~~a~~~e~l~~~~~~~S~~~klm~sIGyvls~~~pEe 625 (982)
T KOG2022|consen 550 SLPLLFQGLHN---SKESEQAISTLKTLCETCPES-LDPYADQFSAVCYEVLNKSNAKDSDRLKLMKSIGYVLSRLKPEE 625 (982)
T ss_pred hHHHHHHHhcC---chHHHHHHHHHHHHHHhhhhh-CchHHHHHHHHHHHHhcccccCchHHHHHHHHHHHHHHhccHHh
Confidence 99999999986 333456677799999999865 8999999999998888764 46789999999999998776 45
Q ss_pred HHhhHhhhHHHHHHHHhcc----CCchhhhhHHH-HHHHHHHHHHHhch--------------hhh-----hhhHHHHHH
Q 001442 500 FQKYYDAVMPFLKAILVNA----TDKSNRMLRAK-SMECISLVGMAVGK--------------DKF-----RDDAKQVME 555 (1076)
Q Consensus 500 ~~~~~~~i~~~L~~~l~~~----~~~~~~~lr~~-a~~~l~~i~~~~g~--------------~~~-----~~~~~~ii~ 555 (1076)
..+|+..++..+..-++.. .+.....+|.. -+.|++.+..++-. +.| .....++|+
T Consensus 626 ~~kyl~~lin~il~qle~~l~~~i~~~e~~l~~~~~l~~iS~LftSL~~~~~~~d~d~~~~~~~~~qq~~il~v~~k~i~ 705 (982)
T KOG2022|consen 626 IPKYLMKLINPILSQLEINLAPGIDDQENHLRIAFQLNTISALFTSLINKKDIIDTDQPEQREEPFQQFPILQVLQKAIP 705 (982)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCccccccchhhhccccccCCHHHHHHHHHH
Confidence 5678888777776666553 11222333332 23555655543310 001 112334455
Q ss_pred HHHHHhcCCCCCCChhhHHHHHHHHHHHHHhccCc-ccchhhhhHHHHH
Q 001442 556 VLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDF-LPYMSVVMPPLLQ 603 (1076)
Q Consensus 556 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~l~~i~~~ll~ 603 (1076)
++.+..+-....++ +.+.+...++.=.+..+..| .|+++.+.+.+.+
T Consensus 706 ~~~kv~s~~~~~s~-vve~~C~i~~~~v~~~~~sF~~p~l~~l~~Fi~r 753 (982)
T KOG2022|consen 706 VFEKVLSMWLGLSD-VVEASCIIMVKGVRSLLTSFPEPMLPSLCPFIVR 753 (982)
T ss_pred HHHHHHHHHhcchh-HHHHHHHHHHhccccccccchhhhHHHHHHHHHH
Confidence 44443221111112 22222222222233345567 7888888888776
No 19
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=99.85 E-value=6e-16 Score=166.62 Aligned_cols=542 Identities=16% Similarity=0.191 Sum_probs=353.9
Q ss_pred hhhHHHHHHHHHHHcCCCcchHHHHHH---HHHhhcCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCC
Q 001442 317 YSVGQECLDRLAIALGGNTIVPVASEQ---LPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPH 393 (1076)
Q Consensus 317 ~~~a~~~l~~l~~~~~~~~~~~~l~~~---l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~ 393 (1076)
+..-..+++++...++ +-+.|.+-.+ +..++-+++...|..+-..++.++..++ +..++..+-+-+.+.+
T Consensus 417 rhllVkvidriLyklD-dlvrpYVhkILvViepllided~yar~egreIisnLakaaG------la~mistmrpDidn~d 489 (1172)
T KOG0213|consen 417 RHLLVKVIDRILYKLD-DLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLAKAAG------LATMISTMRPDIDNKD 489 (1172)
T ss_pred hhhHHHHHHHHHHhhc-ccchhceeeeEEEeecceecchHHHhhchHHHHHHHHHHhh------hHHHHHhhcCCccccc
Confidence 5566678888877665 3344433222 2345567889999888888888776554 3456777778888999
Q ss_pred hhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHH
Q 001442 394 PRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVL 473 (1076)
Q Consensus 394 ~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~aL~~l~~~~~~~~l~~~l~~ll~~l~~~ 473 (1076)
+.||.....+++.++..++ .+.++|.|-....+.+++.-|.....+..+++.-++-. +.||+..++..+-..
T Consensus 490 eYVRnttarafavvasalg-------ip~llpfLkavc~SkkSwqaRhTgIkivqqIail~Gcs-vlphl~~lv~ii~~g 561 (1172)
T KOG0213|consen 490 EYVRNTTARAFAVVASALG-------IPALLPFLKAVCGSKKSWQARHTGIKIVQQIAILSGCS-VLPHLKPLVKIIEHG 561 (1172)
T ss_pred HHHHHHHHHHHHHHHHHhC-------cHHHHHHHHHHhccccchhhhchhhHHHHHHHHHhcch-hhhhhHHHHHHHHHh
Confidence 9999999999999998875 24555655555555347888899999999999887755 579999999999999
Q ss_pred hhcCchhHHHHHHHHHHHHHHHhHhhHHhhHhhhHHHHHHHHhccCCchhhhhHHHHHHHHHHHHHHhchhhhhhh-HHH
Q 001442 474 LQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDD-AKQ 552 (1076)
Q Consensus 474 l~~~~~~v~~~al~ai~~l~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~g~~~~~~~-~~~ 552 (1076)
+.+.+..+|..+..+++.++++.++.=..-|+.++..|.+.+....+.. -..-+.++|.+.--... .+..| ..+
T Consensus 562 l~De~qkVR~itAlalsalaeaa~Pygie~fDsVlkpLwkgir~hrgk~----laafLkAigyliplmd~-eya~yyTre 636 (1172)
T KOG0213|consen 562 LKDEQQKVRTITALALSALAEAATPYGIEQFDSVLKPLWKGIRQHRGKE----LAAFLKAIGYLIPLMDA-EYASYYTRE 636 (1172)
T ss_pred hcccchhhhhHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHccChH----HHHHHHHHhhccccccH-HHHHHhHHH
Confidence 9999999999999999999999876444456777777766655433322 12234555655544442 34433 456
Q ss_pred HHHHHHHHhcCCCCCCChhhHHHHHHHHHHHHHhccCcccchhhhhHHHHHhccCCCCccccCCCCCccccCCCCcccch
Q 001442 553 VMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMET 632 (1076)
Q Consensus 553 ii~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~i~~~ll~~~~~~~~~~~~~~d~d~~~~~~d~~~~~~ 632 (1076)
+|-++..-+++ .|+.++..++..+.++|..-|-+=.-.-..++|..+..+-...-.
T Consensus 637 vmlil~rEf~s---PDeemkkivLKVv~qcc~t~Gv~~~y~r~dilp~ff~~fw~rrmA--------------------- 692 (1172)
T KOG0213|consen 637 VMLILIREFGS---PDEEMKKIVLKVVKQCCATDGVEPAYIRFDILPEFFFSFWGRRMA--------------------- 692 (1172)
T ss_pred HHHHHHHhhCC---ChHHHHHHHHHHHHHHhcccCCCHHHHhhhhhHHHHhhhhhhhhh---------------------
Confidence 77776663332 467788889999998888776542222245666666555211000
Q ss_pred hhcCCceeeecchhHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 001442 633 ITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEK 712 (1076)
Q Consensus 633 ~~~~~~~~~v~~~~~~~k~~A~~~l~~i~~~~~~~~~p~l~~~~~~l~~~l~~~~~~~vr~~a~~~l~~L~~~~~~~~~~ 712 (1076)
.+...+ ..-..+-..++...|.. .++..++.-+.+. ++..|+.++.+...++.....+
T Consensus 693 --~drr~y----------kqlv~ttv~ia~KvG~~------~~v~R~v~~lkde-~e~yrkm~~etv~ri~~~lg~~--- 750 (1172)
T KOG0213|consen 693 --LDRRNY----------KQLVDTTVEIAAKVGSD------PIVSRVVLDLKDE-PEQYRKMVAETVSRIVGRLGAA--- 750 (1172)
T ss_pred --ccccch----------hhHHHHHHHHHHHhCch------HHHHHHhhhhccc-cHHHHHHHHHHHHHHHhccccc---
Confidence 000000 01122233455544431 2333333333332 6889999999988887655211
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 001442 713 GLAPGRNESYVKQLSDFIIPALVEALHKEPDTEICASMLDSLNECIQISGPLLDEGQVRSIVDEIKQVITASSSRKRERA 792 (1076)
Q Consensus 713 ~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~l~~l~~~i~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 792 (1076)
+-+ ..+-..++..++.+++++...+. -++.++..+...+|.-+ ..++..++..++..|.++.
T Consensus 751 ----did----erleE~lidgil~Afqeqtt~d~--vml~gfg~V~~~lg~r~-kpylpqi~stiL~rLnnks------- 812 (1172)
T KOG0213|consen 751 ----DID----ERLEERLIDGILYAFQEQTTEDS--VMLLGFGTVVNALGGRV-KPYLPQICSTILWRLNNKS------- 812 (1172)
T ss_pred ----ccc----HHHHHHHHHHHHHHHHhcccchh--hhhhhHHHHHHHHhhcc-ccchHHHHHHHHHHhcCCC-------
Confidence 222 23334455556667765543332 26788888888877422 3456667766666665442
Q ss_pred HhhcCCCCChHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhc----hhhhHHHHHHhHhhhhcCCCCHHHHHHHHHHH
Q 001442 793 ERAKAEDFDAEESELIKEENEQEEEVFDQVGEILGTLIKTFKAA----FLPFFDELSSYLTPMWGKDKTAEERRIAICIF 868 (1076)
Q Consensus 793 ~~~~~ed~d~~~~~~~~e~~e~~~~~~~~~~~~l~~l~~~~~~~----~~~~~~~l~~~l~~~l~~~~~~~~r~~al~~l 868 (1076)
..++..++++++.+++.+..- ..-|+.. .+..++ ....+++-.+.++.+
T Consensus 813 -----------------------a~vRqqaadlis~la~Vlktc~ee~~m~~lGv---vLyEyl-geeypEvLgsILgAi 865 (1172)
T KOG0213|consen 813 -----------------------AKVRQQAADLISSLAKVLKTCGEEKLMGHLGV---VLYEYL-GEEYPEVLGSILGAI 865 (1172)
T ss_pred -----------------------hhHHHHHHHHHHHHHHHHHhccHHHHHHHhhH---HHHHhc-CcccHHHHHHHHHHH
Confidence 346667888888887766532 3334333 344555 566788899999999
Q ss_pred HHHHHHhhh-hhHhhHHhHHHHHHhhccCCChhHHhhhhHHHHHHHhhcCCCc--hHHHHHHHHHHHHhhcCCCCCChhh
Q 001442 869 DDVAEQCRE-AALKYYETYLPFLLEACNDENQDVRQAAVYGLGVCAEFGGSVV--KPLVGEALSRLNVVIRHPNALQPEN 945 (1076)
Q Consensus 869 ~~l~~~~~~-~~~~~~~~ll~~l~~~l~~~~~~vr~~a~~~lg~l~~~~~~~~--~~~~~~il~~L~~~l~~~~~~~~~~ 945 (1076)
..++...|- ...|-...++|.+...+++.+..|..|++-.+|.+|..+++.+ ..++...++.| .+|.. .+
T Consensus 866 kaI~nvigm~km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLl-elLka------hk 938 (1172)
T KOG0213|consen 866 KAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELL-ELLKA------HK 938 (1172)
T ss_pred HHHHHhccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHH-HHHHH------HH
Confidence 999998873 5666788899999999999999999999999999999999754 34554444333 23322 23
Q ss_pred hhHHHHHHHHHHHHHhhcCCCCCHhhHHHHHHhhC
Q 001442 946 LMAYDNAVSALGKICQFHRDSIDAAQVVPAWLNCL 980 (1076)
Q Consensus 946 ~~~~~na~~al~~i~~~~~~~~~~~~~l~~~l~~l 980 (1076)
..+|.+|..++|-|.+.-+ ...++..+++.|
T Consensus 939 K~iRRaa~nTfG~IakaIG----PqdVLatLlnnL 969 (1172)
T KOG0213|consen 939 KEIRRAAVNTFGYIAKAIG----PQDVLATLLNNL 969 (1172)
T ss_pred HHHHHHHHhhhhHHHHhcC----HHHHHHHHHhcc
Confidence 5899999999999877543 334455555554
No 20
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.83 E-value=1.1e-15 Score=177.96 Aligned_cols=657 Identities=16% Similarity=0.188 Sum_probs=386.3
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHccCc--HHHHHhHHHHHHHHHHHhcCCC-cchhHHHHHHHHHHHHHHhhcc
Q 001442 193 LMMRTLTESLNNGNEATAQEALELLIELAGTEP--RFLRRQLVDVVGSMLQIAEAES-LEEGTRHLAIEFVITLAEARER 269 (1076)
Q Consensus 193 ~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~--~~~~~~l~~l~~~l~~~~~~~~-~~~~~r~~al~~l~~l~~~~~~ 269 (1076)
.+...+...+.++++..|+.++-.|..++...+ ....-+.++|...+...+.+.+ ...++...++..++.+...
T Consensus 818 ~~~~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYelgd~--- 894 (1702)
T KOG0915|consen 818 IILKLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYELGDS--- 894 (1702)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccHHHHHHHHhcCceEEEecCCc---
Confidence 456667777788999999998888777776543 2333456667777777765432 2233333344444444331
Q ss_pred cchhhccchhhHHHHHHHHHHhhcCCCCCccccCCCCCCcccCCC--Cc---hhhHHHHHHHHHHHcCCCcchHHHHHHH
Q 001442 270 APGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGES--SN---YSVGQECLDRLAIALGGNTIVPVASEQL 344 (1076)
Q Consensus 270 ~~~~~~~~~~~~~~l~~~l~~~l~~~~dd~~~~~~~~e~~d~~e~--~~---~~~a~~~l~~l~~~~~~~~~~~~l~~~l 344 (1076)
+.-+.++..++..+....-...--.+|.+-.+++.. ++ .-...+=|-.||..+|...+ +.+++
T Consensus 895 ---------~~k~~LV~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASdl~qPdL---VYKFM 962 (1702)
T KOG0915|consen 895 ---------SLKKSLVDSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASDLGQPDL---VYKFM 962 (1702)
T ss_pred ---------hhHHHHHHHHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhhcCChHH---HHHHH
Confidence 122445555555554321100000001010000000 00 11234556677877774332 23333
Q ss_pred HHhhcCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhH
Q 001442 345 PAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVL 424 (1076)
Q Consensus 345 ~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll 424 (1076)
+-.-.+..|+.|.+|.+.+|.+++...+.+.+|+++++|.+.+.-.||++.||.+-...-+.+...-...+ +.|+..++
T Consensus 963 ~LAnh~A~wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~v-d~y~neIl 1041 (1702)
T KOG0915|consen 963 QLANHNATWNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVV-DEYLNEIL 1041 (1702)
T ss_pred HHhhhhchhhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHH-HHHHHHHH
Confidence 32334568999999999999999999999999999999999999999999999987766666665544444 78999999
Q ss_pred HHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCchhHHHHH---HHHHHHHHHHhHh---
Q 001442 425 PALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGA---LTALASVADSSQE--- 498 (1076)
Q Consensus 425 ~~l~~~l~~~~~~~v~~~a~~aL~~l~~~~~~~~l~~~l~~ll~~l~~~l~~~~~~v~~~a---l~ai~~l~~~~~~--- 498 (1076)
..|+..+.+ ..++||+++|.||..++..-+.+.+...++.+...++..+++-...||+.+ ..+++.++-.+.+
T Consensus 1042 ~eLL~~lt~-kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~ 1120 (1702)
T KOG0915|consen 1042 DELLVNLTS-KEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTN 1120 (1702)
T ss_pred HHHHHhccc-hhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCC
Confidence 999999999 999999999999999998866555667788888899999998888888875 4555555544432
Q ss_pred --hHHhhHhhhHHHHHHHHhccCCchhhhhHHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHhcCCCCCCChhhHHHH
Q 001442 499 --HFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYML 576 (1076)
Q Consensus 499 --~~~~~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~g~~~~~~~~~~ii~~l~~~~~~~~~~~~~~~~~~~ 576 (1076)
.-...++.++|+|..-=. -.....+|.-++.++..+++..|+ ...||++.+++.+++..+. .+ ..+..|..
T Consensus 1121 ~~~~~~~l~~iLPfLl~~gi---ms~v~evr~~si~tl~dl~Kssg~-~lkP~~~~LIp~ll~~~s~-lE--~~vLnYls 1193 (1702)
T KOG0915|consen 1121 GAKGKEALDIILPFLLDEGI---MSKVNEVRRFSIGTLMDLAKSSGK-ELKPHFPKLIPLLLNAYSE-LE--PQVLNYLS 1193 (1702)
T ss_pred cccHHHHHHHHHHHHhccCc---ccchHHHHHHHHHHHHHHHHhchh-hhcchhhHHHHHHHHHccc-cc--hHHHHHHH
Confidence 223577888888765311 123556888889999999999995 7899999999998885542 11 11111110
Q ss_pred -HHHHHHHHHh------ccCccc---------------chhhhhHHHHHhccCCCCccccCCCCCccccCCCCcccchhh
Q 001442 577 -QAWARLCKCL------GQDFLP---------------YMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETIT 634 (1076)
Q Consensus 577 -~~~~~l~~~~------~~~~~~---------------~l~~i~~~ll~~~~~~~~~~~~~~d~d~~~~~~d~~~~~~~~ 634 (1076)
.+.+.=.+++ +..-.| -+..++|.+.+.+..
T Consensus 1194 ~r~~~~e~ealDt~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~--------------------------- 1246 (1702)
T KOG0915|consen 1194 LRLINIETEALDTLRASAAKSSPMMETINKCINYIDISVLEELIPRLTELVRG--------------------------- 1246 (1702)
T ss_pred HhhhhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhc---------------------------
Confidence 0000000000 000111 123333333333311
Q ss_pred cCCceeeecchhHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 001442 635 LGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEKGL 714 (1076)
Q Consensus 635 ~~~~~~~v~~~~~~~k~~A~~~l~~i~~~~~~~~~p~l~~~~~~l~~~l~~~~~~~vr~~a~~~l~~L~~~~~~~~~~~~ 714 (1076)
.++ +..|..+...+..++..++..+.||....+..+++.+.+ .++.+|++.+.+++.|+...
T Consensus 1247 ----sVg-----l~Tkvg~A~fI~~L~~r~~~emtP~sgKll~al~~g~~d-RNesv~kafAsAmG~L~k~S-------- 1308 (1702)
T KOG0915|consen 1247 ----SVG-----LGTKVGCASFISLLVQRLGSEMTPYSGKLLRALFPGAKD-RNESVRKAFASAMGYLAKFS-------- 1308 (1702)
T ss_pred ----cCC-----CCcchhHHHHHHHHHHHhccccCcchhHHHHHHhhcccc-ccHHHHHHHHHHHHHHHhcC--------
Confidence 111 123567788899999999999999999999999999998 69999999999999998743
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHh
Q 001442 715 APGRNESYVKQLSDFIIPALVEALHKEPDTEICASMLDSLNECIQISGPLLDEGQVRSIVDEIKQVITASSSRKRERAER 794 (1076)
Q Consensus 715 ~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~l~~l~~~i~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 794 (1076)
.+...+.++..++..++.. .++...+ .+..+.. +... .++.++.+.+.+++++-=...
T Consensus 1309 ----s~dq~qKLie~~l~~~l~k--~es~~si---scatis~-Ian~----s~e~Lkn~asaILPLiFLa~~-------- 1366 (1702)
T KOG0915|consen 1309 ----SPDQMQKLIETLLADLLGK--DESLKSI---SCATISN-IANY----SQEMLKNYASAILPLIFLAMH-------- 1366 (1702)
T ss_pred ----ChHHHHHHHHHHHHHHhcc--CCCccch---hHHHHHH-HHHh----hHHHHHhhHHHHHHHHHHHHh--------
Confidence 2334556665555443331 1222222 3333333 2211 123344444444443321110
Q ss_pred hcCCCCChHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhchhh-hHHHHHHhHhhhhcCCCCHHHHHHHHHHHHHHHH
Q 001442 795 AKAEDFDAEESELIKEENEQEEEVFDQVGEILGTLIKTFKAAFLP-FFDELSSYLTPMWGKDKTAEERRIAICIFDDVAE 873 (1076)
Q Consensus 795 ~~~ed~d~~~~~~~~e~~e~~~~~~~~~~~~l~~l~~~~~~~~~~-~~~~l~~~l~~~l~~~~~~~~r~~al~~l~~l~~ 873 (1076)
|+ + ++...++ -+++..++.. |....+ |...++..+......+.+...|..+...+..++.
T Consensus 1367 ---ee-~-----------Ka~q~Lw---~dvW~e~vsg-gagtvrl~~~eiLn~iceni~nn~~w~lr~q~Akai~~~a~ 1427 (1702)
T KOG0915|consen 1367 ---EE-E-----------KANQELW---NDVWAELVSG-GAGTVRLYLLEILNLICENITNNESWKLRKQAAKAIRVIAE 1427 (1702)
T ss_pred ---HH-H-----------HHHHHHH---HHHHHHhCCC-CcchhhhhHHHHHHHHHHHhccchHHHHHHHHHHHHHHHcc
Confidence 00 0 0111111 1222222211 122222 4444554444444345556777777766666666
Q ss_pred Hhhhhh-HhhHHhHHHHHHhhccCCChhHHhhhhHHHHHHHhhcCCCchHHHHHHHHHHHHhhcCCCCCChhhhhHHHHH
Q 001442 874 QCREAA-LKYYETYLPFLLEACNDENQDVRQAAVYGLGVCAEFGGSVVKPLVGEALSRLNVVIRHPNALQPENLMAYDNA 952 (1076)
Q Consensus 874 ~~~~~~-~~~~~~ll~~l~~~l~~~~~~vr~~a~~~lg~l~~~~~~~~~~~~~~il~~L~~~l~~~~~~~~~~~~~~~na 952 (1076)
...... .|+.-.+.+.+..++...-.+-++.-..++......+...+....+.+.+...+..... ....+.-+
T Consensus 1428 ~~sss~~~p~ilkl~~~ll~~L~GRiwdGKe~iLKAl~~~~~a~~~~v~~~~~si~~A~~~e~sr~------~~~y~~~a 1501 (1702)
T KOG0915|consen 1428 GLSSSAPIPVILKLALSLLDTLNGRIWDGKEEILKALASAFEAGLADVKRNMSSIEHAVMEEVSRR------EAKYKIMA 1501 (1702)
T ss_pred cccccCChHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHhHHHHHHhchHHHHHHHHHHHHH------HhHHHHHH
Confidence 554433 36788888888888876654444444444554444444433333445555555444321 22334444
Q ss_pred HHHHHHHHhhcCC
Q 001442 953 VSALGKICQFHRD 965 (1076)
Q Consensus 953 ~~al~~i~~~~~~ 965 (1076)
..+.|..+...+.
T Consensus 1502 la~~~~~lda~~~ 1514 (1702)
T KOG0915|consen 1502 LAGAGLALDATKA 1514 (1702)
T ss_pred HhhhHHHHhhhhh
Confidence 4555555554443
No 21
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.82 E-value=9.8e-15 Score=181.62 Aligned_cols=762 Identities=16% Similarity=0.190 Sum_probs=436.7
Q ss_pred chhHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhCCcchHhH--HhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 001442 142 PELLPFMFQCVSSDSVKLQESAFLIFAQLIINFIQCLTSSADRDR--FQDLLPLMMRTLTESLNNGNEATAQEALELLIE 219 (1076)
Q Consensus 142 ~~ll~~l~~~~~~~~~~~r~~al~~L~~l~~~~~~~l~~~~~~~~--~~~l~p~~l~~l~~~~~~~~~~~~~~~~~~l~~ 219 (1076)
.+.+|.|...+.+++..++..+..+|..+.. ++..... -..-+|.++.. +++++.+.+..+..+|..
T Consensus 57 aGaIP~LV~lL~sg~~~vk~nAaaaL~nLS~-------~e~nk~~Iv~~GaIppLV~L----L~sGs~eaKe~AA~AL~s 125 (2102)
T PLN03200 57 SQAMPLLVSLLRSGTLGAKVNAAAVLGVLCK-------EEDLRVKVLLGGCIPPLLSL----LKSGSAEAQKAAAEAIYA 125 (2102)
T ss_pred cCcHHHHHHHHcCCCHHHHHHHHHHHHHHhc-------CHHHHHHHHHcCChHHHHHH----HHCCCHHHHHHHHHHHHH
Confidence 4468889999989999999888877765520 1110111 12344555554 467789999999999999
Q ss_pred HHccCc-HHHHHh---HHHHHHHHHHHhcCCCc-chhHHHHHHHHHHHHHHhhcccchhhccchhhH-HHHHHHHHHhhc
Q 001442 220 LAGTEP-RFLRRQ---LVDVVGSMLQIAEAESL-EEGTRHLAIEFVITLAEARERAPGMMRKLPQFI-NRLFAILMSMLL 293 (1076)
Q Consensus 220 l~~~~~-~~~~~~---l~~l~~~l~~~~~~~~~-~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~-~~l~~~l~~~l~ 293 (1076)
++.... +..+.+ -...++.++..+.+... +..++..++-.+..++.. ..+..+ ..+ ...+|.++..+.
T Consensus 126 LS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~Av~AL~nLs~~---~en~~~---~IIeaGaVp~LV~LLs 199 (2102)
T PLN03200 126 VSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGLLTGALRNLCGS---TDGFWS---ATLEAGGVDILVKLLS 199 (2102)
T ss_pred HHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhHHHHHHHHHHHHHHhcC---ccchHH---HHHHcCCHHHHHHHHc
Confidence 987642 221111 14567777777755322 233567777888888874 211111 111 236777777774
Q ss_pred CCCCCccccCCCCCCcccCCCCchhhHHHHHHHHHHHcC--CCcch-HHHHHHHHHhhcC-CChhHHHHHHHHHHHHHhh
Q 001442 294 DIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALG--GNTIV-PVASEQLPAYLAA-PEWQKHHAALIALAQIAEG 369 (1076)
Q Consensus 294 ~~~dd~~~~~~~~e~~d~~e~~~~~~a~~~l~~l~~~~~--~~~~~-~~l~~~l~~~l~~-~~~~~r~aal~~l~~l~~~ 369 (1076)
..+ + .....|..++..++...+ ...++ ...+|.+.+++++ .+...|+.|..+|+.++.+
T Consensus 200 S~d--~---------------~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL~nLAs~ 262 (2102)
T PLN03200 200 SGN--S---------------DAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQ 262 (2102)
T ss_pred CCC--H---------------HHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHccCCChHHHHHHHHHHHHHhcC
Confidence 321 1 123345555555554322 01111 1234555666654 5668999999999999987
Q ss_pred cHHHHHHhHH-HHHHHHHhhCCCCC---------hhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCChhH
Q 001442 370 CAKVMVKNLE-QVLSMVLNSFRDPH---------PRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRV 439 (1076)
Q Consensus 370 ~~~~~~~~l~-~i~~~l~~~l~d~~---------~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~v 439 (1076)
..+.-...++ ..++.++..+..++ ..++..|.|+|+.++... ..+++.|.+.++...+..+
T Consensus 263 s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~---------~~ll~~L~~ll~s~rd~~~ 333 (2102)
T PLN03200 263 SKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGM---------SALILYLGELSESPRSPAP 333 (2102)
T ss_pred CHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCc---------hhhHHHHHHhhcccchHHH
Confidence 6543221111 23455555554333 446889999999999654 3466777766665234556
Q ss_pred HHHHHHHHHHhhhcCCcc--cccCch-HHHHHHHHHHhhcCchh-HHHHHHHHHHHHHHHhH--hhHHhhHhhhHHHHHH
Q 001442 440 QAHAASAVLNFSENCTPE--ILTPYL-DGIVSKLLVLLQNGKQM-VQEGALTALASVADSSQ--EHFQKYYDAVMPFLKA 513 (1076)
Q Consensus 440 ~~~a~~aL~~l~~~~~~~--~l~~~l-~~ll~~l~~~l~~~~~~-v~~~al~ai~~l~~~~~--~~~~~~~~~i~~~L~~ 513 (1076)
...+|+++..+...+... ...-.- ..+.+.|.+++++.++. +++.+..+|..+..... ..+. -....+.|..
T Consensus 334 ~ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~--~~daik~LV~ 411 (2102)
T PLN03200 334 IADTLGALAYALMVFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLN--HAEAKKVLVG 411 (2102)
T ss_pred HHHHHhhHHHHHHhcCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHH--hccchhhhhh
Confidence 677889998885544321 111011 24568899999988665 47788888866443321 1111 1245566666
Q ss_pred HHhccCCchhhhhHHHHHHHHHHHHHHhchhhhhhhH-HHHHHHHHHHhcCCCCCCChhhHHHHHHHHHHHHHhccCccc
Q 001442 514 ILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDA-KQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDFLP 592 (1076)
Q Consensus 514 ~l~~~~~~~~~~lr~~a~~~l~~i~~~~g~~~~~~~~-~~ii~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 592 (1076)
++... ...++..+..++..++..-. +...-.. ...++.+.++... .+...+..+..+++.++....+.-..
T Consensus 412 LL~~~----~~evQ~~Av~aL~~L~~~~~-e~~~aIi~~ggIp~LV~LL~s---~s~~iQ~~A~~~L~nLa~~ndenr~a 483 (2102)
T PLN03200 412 LITMA----TADVQEELIRALSSLCCGKG-GLWEALGGREGVQLLISLLGL---SSEQQQEYAVALLAILTDEVDESKWA 483 (2102)
T ss_pred hhccC----CHHHHHHHHHHHHHHhCCCH-HHHHHHHHcCcHHHHHHHHcC---CCHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 66532 23467778888877763311 1111111 1234555554332 13346666777777776422111110
Q ss_pred c-hhhhhHHHHHhccCCCCccccCCCCCccccCCCCcccchhhcCCceeeecchhHHHHHHHHHHHHHHHHHhhhccccc
Q 001442 593 Y-MSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPW 671 (1076)
Q Consensus 593 ~-l~~i~~~ll~~~~~~~~~~~~~~d~d~~~~~~d~~~~~~~~~~~~~~~v~~~~~~~k~~A~~~l~~i~~~~~~~~~p~ 671 (1076)
. =...+|.+.+.+... ..+.|+.|+.+|+.++.+ .......
T Consensus 484 IieaGaIP~LV~LL~s~-------------------------------------~~~iqeeAawAL~NLa~~-~~qir~i 525 (2102)
T PLN03200 484 ITAAGGIPPLVQLLETG-------------------------------------SQKAKEDSATVLWNLCCH-SEDIRAC 525 (2102)
T ss_pred HHHCCCHHHHHHHHcCC-------------------------------------CHHHHHHHHHHHHHHhCC-cHHHHHH
Confidence 0 134566677766421 013467899999998863 2223333
Q ss_pred HH--HHHHHhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHccCCcHHHHHH
Q 001442 672 ID--QVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVEALHKEPDTEICAS 749 (1076)
Q Consensus 672 l~--~~~~~l~~~l~~~~~~~vr~~a~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ 749 (1076)
+. .+++.++.+++.. ...+|+.|+.+|.+|+... +.. .++.++..+..+ ++.+...
T Consensus 526 V~~aGAIppLV~LL~sg-d~~~q~~Aa~AL~nLi~~~------------d~~--------~I~~Lv~LLlsd-d~~~~~~ 583 (2102)
T PLN03200 526 VESAGAVPALLWLLKNG-GPKGQEIAAKTLTKLVRTA------------DAA--------TISQLTALLLGD-LPESKVH 583 (2102)
T ss_pred HHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHhcc------------chh--------HHHHHHHHhcCC-ChhHHHH
Confidence 32 4566777777764 7899999999999886531 111 124444445443 4555555
Q ss_pred HHHHHHHHHHHhCCCCCHHHH------HHHHHHHHHHHHHHHHhHHHHHHhhcCCCCChHhhhhhhhhhhhHHHHHHHHH
Q 001442 750 MLDSLNECIQISGPLLDEGQV------RSIVDEIKQVITASSSRKRERAERAKAEDFDAEESELIKEENEQEEEVFDQVG 823 (1076)
Q Consensus 750 ~l~~l~~~i~~~g~~~~~~~~------~~~~~~l~~~l~~~~~~~~~~~~~~~~ed~d~~~~~~~~e~~e~~~~~~~~~~ 823 (1076)
++..+..++...... +.. ...++.+.+++... ...+...++
T Consensus 584 aL~vLgnIlsl~~~~---d~~~~g~~~~ggL~~Lv~LL~sg------------------------------s~~ikk~Aa 630 (2102)
T PLN03200 584 VLDVLGHVLSVASLE---DLVREGSAANDALRTLIQLLSSS------------------------------KEETQEKAA 630 (2102)
T ss_pred HHHHHHHHHhhcchh---HHHHHhhhccccHHHHHHHHcCC------------------------------CHHHHHHHH
Confidence 677766665533210 101 01222333333211 134555677
Q ss_pred HHHHHHHHHhhhchhhh-HHHHHHhHhhhhcCCCCHHHHHHHHHHHHHHHHHhhhhhHh-hH-HhHHHHHHhhccCCChh
Q 001442 824 EILGTLIKTFKAAFLPF-FDELSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREAALK-YY-ETYLPFLLEACNDENQD 900 (1076)
Q Consensus 824 ~~l~~l~~~~~~~~~~~-~~~l~~~l~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~-~~-~~ll~~l~~~l~~~~~~ 900 (1076)
.++..++....+..... ....+|.++..+. +.+.+.+..+...|+.++......-.. +. ...+|++++.+++++..
T Consensus 631 ~iLsnL~a~~~d~~~avv~agaIpPLV~LLs-s~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~ 709 (2102)
T PLN03200 631 SVLADIFSSRQDLCESLATDEIINPCIKLLT-NNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIE 709 (2102)
T ss_pred HHHHHHhcCChHHHHHHHHcCCHHHHHHHHh-cCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChH
Confidence 88888876555432222 2336777777774 556677888888888888643332222 23 34789999999999999
Q ss_pred HHhhhhHHHHHHHhhcCCCchHHHHHHHHHHHHhhcCCCCCChhhhhHHHHHHHHHHHHHhhcCCC--C----CHhhHHH
Q 001442 901 VRQAAVYGLGVCAEFGGSVVKPLVGEALSRLNVVIRHPNALQPENLMAYDNAVSALGKICQFHRDS--I----DAAQVVP 974 (1076)
Q Consensus 901 vr~~a~~~lg~l~~~~~~~~~~~~~~il~~L~~~l~~~~~~~~~~~~~~~na~~al~~i~~~~~~~--~----~~~~~l~ 974 (1076)
++..|+.+|+.++........-.-...++.|.+++... +...|+||+.++..++...+.. + .-...+.
T Consensus 710 v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr~G------~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~ 783 (2102)
T PLN03200 710 VAEQAVCALANLLSDPEVAAEALAEDIILPLTRVLREG------TLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVL 783 (2102)
T ss_pred HHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHHhC------ChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHH
Confidence 99999999999998764221111234578888888653 3578999999999999987632 1 1122445
Q ss_pred HHHhhCCCCCcHHHHH--HHHHHHHHHHhhcCCcccCcCcC----chhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHH
Q 001442 975 AWLNCLPIKGDLIEAK--IVHEQLCSMVERSDSDLLGPNHQ----YLPKIVSVFAEILCGKDLATEQTLSRIVNLLKQLQ 1048 (1076)
Q Consensus 975 ~~l~~lp~~~d~~e~~--~~~~~l~~li~~~~~~~~~~~~~----~l~~i~~~~~~~l~~~~~~~~~~~~~~~~~l~~l~ 1048 (1076)
.+++.|.- .|.+... .+...|..+.+.....-..+.+- -.|.=+.-+.+.+.. ..+.+..+..++|..+.
T Consensus 784 ~l~~~L~~-~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~e~p~~l~~l~~~l~~---~~p~~~~kai~il~~~~ 859 (2102)
T PLN03200 784 ALVDLLNS-TDLDSSATSEALEALALLARTKGGANFSHPPWAVLAEVPSSLEPLVRCLAE---GHPLVQDKAIEILSRLC 859 (2102)
T ss_pred HHHHHHhc-CCcchhhHHHHHHHHHHHHhhcccCCCCCCchhhHHhccCchHHHHHHHHc---CChHHHHHHHHHHHHHh
Confidence 56666532 2333322 36666666665322111110000 011123333344422 14679999999999999
Q ss_pred hhCChhhHHHHHh
Q 001442 1049 QTLPPATLASTWS 1061 (1076)
Q Consensus 1049 ~~~~~~~~~~~~~ 1061 (1076)
++-|.. +...+.
T Consensus 860 ~~~~~~-~~~~~~ 871 (2102)
T PLN03200 860 RDQPVV-LGDLIA 871 (2102)
T ss_pred ccChhH-HHHHHh
Confidence 987765 555554
No 22
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.80 E-value=3.2e-15 Score=174.13 Aligned_cols=559 Identities=15% Similarity=0.170 Sum_probs=345.0
Q ss_pred cchHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhcHH--HHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhc
Q 001442 335 TIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAK--VMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLG 412 (1076)
Q Consensus 335 ~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~--~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~ 412 (1076)
...-.+...+...+.++++..|.|++.+|-.+..+|+. ...-+.++|.......|.|.+..++..|.+.+|-+-+--.
T Consensus 814 ~~~~~~~~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYelgd 893 (1702)
T KOG0915|consen 814 TRETIILKLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYELGD 893 (1702)
T ss_pred ccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccHHHHHHHHhcCceEEEecCC
Confidence 34445666677788899999999999999999988873 3445677888899999999999999999999987765444
Q ss_pred hhHHhhhhhhhHHHHHhhccCC----CChhH-------------HHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhh
Q 001442 413 PDLQNQFHPQVLPALAGAMDDF----QNPRV-------------QAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQ 475 (1076)
Q Consensus 413 ~~~~~~~~~~ll~~l~~~l~~~----~~~~v-------------~~~a~~aL~~l~~~~~~~~l~~~l~~ll~~l~~~l~ 475 (1076)
........+.++..+..+=+.. .+..+ ......-|.+++..++ -|+++..++++-+
T Consensus 894 ~~~k~~LV~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASdl~-------qPdLVYKFM~LAn 966 (1702)
T KOG0915|consen 894 SSLKKSLVDSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASDLG-------QPDLVYKFMQLAN 966 (1702)
T ss_pred chhHHHHHHHHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhhcC-------ChHHHHHHHHHhh
Confidence 4443444555555555422210 00000 1112222222322222 2556666776665
Q ss_pred cC-chhHHHHHHHHHHHHHHHhHhhHHhhHhhhHHHHHHHHhccCCchhhhhHHHHHHHHHHHHHHhchhhhhhhHHHHH
Q 001442 476 NG-KQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVM 554 (1076)
Q Consensus 476 ~~-~~~v~~~al~ai~~l~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~g~~~~~~~~~~ii 554 (1076)
+. .+.-|..|.-.+|.++...++.+.||+..++|.|.++= -|+
T Consensus 967 h~A~wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~---yDP--------------------------------- 1010 (1702)
T KOG0915|consen 967 HNATWNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQ---YDP--------------------------------- 1010 (1702)
T ss_pred hhchhhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhc---cCC---------------------------------
Confidence 43 45667778888888888888888888888888777641 111
Q ss_pred HHHHHHhcCCCCCCChhhHHHHHHHHHHHHHhccCcccchhhhhHHHHHhccCCCCccccCCCCCccccCCCCcccchhh
Q 001442 555 EVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETIT 634 (1076)
Q Consensus 555 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~i~~~ll~~~~~~~~~~~~~~d~d~~~~~~d~~~~~~~~ 634 (1076)
+-.++..+.+.|..+..--+.-...|+..|+..++..+.. ..|
T Consensus 1011 -------------~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~--------------------kew---- 1053 (1702)
T KOG0915|consen 1011 -------------DKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTS--------------------KEW---- 1053 (1702)
T ss_pred -------------cHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccc--------------------hhH----
Confidence 1112233333344443322333556777788777766632 112
Q ss_pred cCCceeeecchhHHHHHHHHHHHHHHHHHhhh-cccccHHHHHHHhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHhC
Q 001442 635 LGDKRIGIKTSVLEEKATACNMLCCYADELKE-GFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEKG 713 (1076)
Q Consensus 635 ~~~~~~~v~~~~~~~k~~A~~~l~~i~~~~~~-~~~p~l~~~~~~l~~~l~~~~~~~vr~~a~~~l~~L~~~~~~~~~~~ 713 (1076)
.-|+++|.+|..+..+-+. .+...++++...+.+..+| ..+.||++|-.+...+...+... .
T Consensus 1054 -------------RVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDD-IKEsVR~aa~~~~~~lsKl~vr~---~ 1116 (1702)
T KOG0915|consen 1054 -------------RVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDD-IKESVREAADKAARALSKLCVRI---C 1116 (1702)
T ss_pred -------------HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhh---c
Confidence 2368899999999987543 4677788999999999887 58999999988877665543221 1
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHH---hHH-
Q 001442 714 LAPGRNESYVKQLSDFIIPALVEALHKEPDTEICASMLDSLNECIQISGPLLDEGQVRSIVDEIKQVITASSS---RKR- 789 (1076)
Q Consensus 714 ~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~l~~l~~~i~~~g~~~~~~~~~~~~~~l~~~l~~~~~---~~~- 789 (1076)
++ ..+...++.++.++|-|+..-.-....+++...+..+.++.+..|. .+.+.+..++..|.+... .+.
T Consensus 1117 d~--~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~-----~lkP~~~~LIp~ll~~~s~lE~~vL 1189 (1702)
T KOG0915|consen 1117 DV--TNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGK-----ELKPHFPKLIPLLLNAYSELEPQVL 1189 (1702)
T ss_pred cc--CCcccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchh-----hhcchhhHHHHHHHHHccccchHHH
Confidence 11 1223456788889998875443355788899999999999998885 333333333333332211 000
Q ss_pred -HHHHhhcCCCCChHhhhhhhhhhhhHHHHHHHH------HHHHHHHHHHhhhchhhhHHHHHHhHhhhhcCCCCHHHHH
Q 001442 790 -ERAERAKAEDFDAEESELIKEENEQEEEVFDQV------GEILGTLIKTFKAAFLPFFDELSSYLTPMWGKDKTAEERR 862 (1076)
Q Consensus 790 -~~~~~~~~ed~d~~~~~~~~e~~e~~~~~~~~~------~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~r~ 862 (1076)
.-..+. +..+.+.+ +..|-.+ .+.++.++..... ..++++.|.+.+.++++..-..|.
T Consensus 1190 nYls~r~-----~~~e~eal-------Dt~R~s~aksspmmeTi~~ci~~iD~---~vLeelip~l~el~R~sVgl~Tkv 1254 (1702)
T KOG0915|consen 1190 NYLSLRL-----INIETEAL-------DTLRASAAKSSPMMETINKCINYIDI---SVLEELIPRLTELVRGSVGLGTKV 1254 (1702)
T ss_pred HHHHHhh-----hhhHHHHH-------HHHHHhhhcCCcHHHHHHHHHHhhhH---HHHHHHHHHHHHHHhccCCCCcch
Confidence 000000 11111111 1122222 2233333333222 236778999999887776666788
Q ss_pred HHHHHHHHHHHHhhhhhHhhHHhHHHHHHhhccCCChhHHhhhhHHHHHHHhhcCCCchHHHHHHHHHHHHhhcCCCCCC
Q 001442 863 IAICIFDDVAEQCREAALKYYETYLPFLLEACNDENQDVRQAAVYGLGVCAEFGGSVVKPLVGEALSRLNVVIRHPNALQ 942 (1076)
Q Consensus 863 ~al~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~vr~~a~~~lg~l~~~~~~~~~~~~~~il~~L~~~l~~~~~~~ 942 (1076)
.+..++.-++..+|..+.||...++..++.+++|.++.+|+.-+.++|.++....+ .....+++.+...+..+..
T Consensus 1255 g~A~fI~~L~~r~~~emtP~sgKll~al~~g~~dRNesv~kafAsAmG~L~k~Ss~---dq~qKLie~~l~~~l~k~e-- 1329 (1702)
T KOG0915|consen 1255 GCASFISLLVQRLGSEMTPYSGKLLRALFPGAKDRNESVRKAFASAMGYLAKFSSP---DQMQKLIETLLADLLGKDE-- 1329 (1702)
T ss_pred hHHHHHHHHHHHhccccCcchhHHHHHHhhccccccHHHHHHHHHHHHHHHhcCCh---HHHHHHHHHHHHHHhccCC--
Confidence 88888999999999999999999999999999999999999999999999999875 2344455555444433321
Q ss_pred hhhhhHHHHHHHHHHHHHhhcCCCC--CHhhHHHHHHhhCCCCCcHHHHHHHHHHHHHHHhhcCCcccCcCcCchhhHHH
Q 001442 943 PENLMAYDNAVSALGKICQFHRDSI--DAAQVVPAWLNCLPIKGDLIEAKIVHEQLCSMVERSDSDLLGPNHQYLPKIVS 1020 (1076)
Q Consensus 943 ~~~~~~~~na~~al~~i~~~~~~~~--~~~~~l~~~l~~lp~~~d~~e~~~~~~~l~~li~~~~~~~~~~~~~~l~~i~~ 1020 (1076)
..+.-+|..+..|..+.++.+ +...++|.++=.+- ++..++..-+.- ++...-|.-.+.-+-+.+.|+.
T Consensus 1330 ----s~~siscatis~Ian~s~e~Lkn~asaILPLiFLa~~--ee~Ka~q~Lw~d---vW~e~vsggagtvrl~~~eiLn 1400 (1702)
T KOG0915|consen 1330 ----SLKSISCATISNIANYSQEMLKNYASAILPLIFLAMH--EEEKANQELWND---VWAELVSGGAGTVRLYLLEILN 1400 (1702)
T ss_pred ----CccchhHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHh--HHHHHHHHHHHH---HHHHhCCCCcchhhhhHHHHHH
Confidence 222456666666666665555 57889998766652 222333334332 2222223333321114556666
Q ss_pred HHHHHh
Q 001442 1021 VFAEIL 1026 (1076)
Q Consensus 1021 ~~~~~l 1026 (1076)
.+++-.
T Consensus 1401 ~iceni 1406 (1702)
T KOG0915|consen 1401 LICENI 1406 (1702)
T ss_pred HHHHHh
Confidence 555444
No 23
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=99.80 E-value=5.9e-14 Score=152.22 Aligned_cols=568 Identities=13% Similarity=0.146 Sum_probs=326.3
Q ss_pred HHHHHHHHHhcCC--ChHHHHHHHHHHHHhhhcCchHHHHHHHHHHcc-CCCHHHHHHHHHHHHHhcccCCCCcccCCCH
Q 001442 22 APFETLISHLMST--SNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQR-SPHPEARAMAAVLLRKLLTRDDSFLWPRLSL 98 (1076)
Q Consensus 22 ~~l~~lL~~~~s~--d~~~r~~Ae~~L~~~~~~~p~~~~~~L~~il~~-~~~~~~R~~a~v~Lk~~i~~~~~~~w~~l~~ 98 (1076)
+.++|++.+...| |+..|+||.+.+++++. .|++| ..+.+++.. +.++.+|.+....|-..++.. +...+.
T Consensus 3 ddiEqav~a~ndp~vdsa~KqqA~~y~~qiKs-Sp~aw-~Icie~l~~~ts~d~vkf~clqtL~e~vrek----yne~nl 76 (980)
T KOG2021|consen 3 DDIEQAVNAVNDPRVDSATKQQAIEYLNQIKS-SPNAW-EICIELLINETSNDLVKFYCLQTLIELVREK----YNEANL 76 (980)
T ss_pred hHHHHHHHhhCCCcccHHHHHHHHHHHHhhcC-CccHH-HHHHHHHHhhcccchhhhhhHHHHHHHHHHh----hccCCH
Confidence 4678888888766 88999999999999999 69885 677777754 588999999999999998875 456888
Q ss_pred hHHHHHHHHHHHHHhh-----c---chhhHHHHHHHHHHHHHhcccCCCCcchhHHHHHHhhcCCCH-HHHHHHHHHHHH
Q 001442 99 HTQSSLKSMLLQSIQL-----E---SAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSV-KLQESAFLIFAQ 169 (1076)
Q Consensus 99 ~~~~~lk~~Ll~~l~~-----~---~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~~~~~-~~r~~al~~L~~ 169 (1076)
..++.+|..+...+.- + ...-++++++++++.+.-.++| ..|+.++..++..+.-+.. ..-+--+++|-.
T Consensus 77 ~elqlvR~sv~swlk~qvl~ne~~~~p~fi~Nk~aqvlttLf~~eYp-~~WnsfF~dlmsv~~~~s~~~~~dfflkvlla 155 (980)
T KOG2021|consen 77 NELQLVRFSVTSWLKFQVLGNEQTKLPDFIMNKIAQVLTTLFMLEYP-DCWNSFFDDLMSVFQVDSAISGLDFFLKVLLA 155 (980)
T ss_pred HHHHHHHHHHHHHHHHHHhCcccCCCChHHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHhcccchhhHHHHHHHHHH
Confidence 8999999999876642 2 2456999999999999999999 6899999888876653322 122333333333
Q ss_pred H----------------------------------HHHHHHhhC------Ccc-------hHhHHhhhH-------HHHH
Q 001442 170 L----------------------------------IINFIQCLT------SSA-------DRDRFQDLL-------PLMM 195 (1076)
Q Consensus 170 l----------------------------------~~~~~~~l~------~~~-------~~~~~~~l~-------p~~l 195 (1076)
+ ...+.+.+. +++ ....|..++ ..++
T Consensus 156 IdsEiad~dv~rT~eei~knnliKDaMR~ndip~lv~~wyqil~~y~n~~npgl~~~cLdc~g~fVSWIdInLIaNd~f~ 235 (980)
T KOG2021|consen 156 IDSEIADQDVIRTKEEILKNNLIKDAMRDNDIPKLVNVWYQILKLYENIVNPGLINSCLDCIGSFVSWIDINLIANDYFL 235 (980)
T ss_pred hhhHhhhccccCChHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHhhhhhhhhhhchhHH
Confidence 3 011111110 110 111122221 2344
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHccCcHHHHH--hHHHH---HHHHHHHhc--------------------------
Q 001442 196 RTLTESLNNGNEATAQEALELLIELAGTEPRFLRR--QLVDV---VGSMLQIAE-------------------------- 244 (1076)
Q Consensus 196 ~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~--~l~~l---~~~l~~~~~-------------------------- 244 (1076)
+.+...++ -+++|..|+.|+..++...-+.+.+ .+..+ .+.......
T Consensus 236 nLLy~fl~--ieelR~aac~cilaiVsKkMkP~dKL~lln~L~q~l~lfg~~s~dq~~d~df~e~vskLitg~gvel~~i 313 (980)
T KOG2021|consen 236 NLLYKFLN--IEELRIAACNCILAIVSKKMKPMDKLALLNMLNQTLELFGYHSADQMDDLDFWESVSKLITGFGVELTII 313 (980)
T ss_pred HHHHHHHh--HHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhhccccccCchHHHHHHHHHhhcceeeehh
Confidence 55555554 4678889999988888765433322 11111 010000000
Q ss_pred ----CCCcchhHHHHHHH--------------------------HHHHHHHhhcccchhhccchhhHHHHHHHHHHhhcC
Q 001442 245 ----AESLEEGTRHLAIE--------------------------FVITLAEARERAPGMMRKLPQFINRLFAILMSMLLD 294 (1076)
Q Consensus 245 ----~~~~~~~~r~~al~--------------------------~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~ 294 (1076)
+++.+...+..++. ||......-++-+........++.+++..+++.+.+
T Consensus 314 ~s~lnseld~~~kqn~l~~ll~~vpyllq~l~~e~ddit~~ifpFlsdyl~~LKkl~~ls~~qk~~l~~illai~kqicy 393 (980)
T KOG2021|consen 314 ISQLNSELDTLYKQNVLSILLEIVPYLLQFLNNEFDDITAKIFPFLSDYLAFLKKLKALSSPQKVPLHKILLAIFKQICY 393 (980)
T ss_pred HhhhhhccCHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHhhcccccchhhccHHHHHHHHHHHHhc
Confidence 01112222222222 222211100000100011112445555555555554
Q ss_pred CCCCccccCCCCCCcccCCCC-chhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhc---CCChhHHHHHHHHHHHHHhhc
Q 001442 295 IEDDPLWHSAETEDEDAGESS-NYSVGQECLDRLAIALGGNTIVPVASEQLPAYLA---APEWQKHHAALIALAQIAEGC 370 (1076)
Q Consensus 295 ~~dd~~~~~~~~e~~d~~e~~-~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~---~~~~~~r~aal~~l~~l~~~~ 370 (1076)
.+. ..|+.+-+.+|+++... .|+--.-.+++++..-| +.+...+-+.+...+. .++|..-+.|+..+-.++|+.
T Consensus 394 dem-y~nddn~tg~EeEa~f~e~RkkLk~fqdti~~idp-sl~l~~Ir~slS~al~ns~e~swqevE~Aiylly~lgE~l 471 (980)
T KOG2021|consen 394 DEM-YFNDDNVTGDEEEAFFEEVRKKLKNFQDTIVVIDP-SLFLNNIRQSLSAALMNSKEESWQEVELAIYLLYNLGECL 471 (980)
T ss_pred cHH-hhcccCCCCchHHHHHHHHHHHHHHHHHHHHhcCH-HHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhcc
Confidence 321 12332211222222222 33333344556655443 4444445555554443 457999999999999999977
Q ss_pred HHHH--------H--HhHHHHHHHHHh--hCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHH--hhccCCCC
Q 001442 371 AKVM--------V--KNLEQVLSMVLN--SFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALA--GAMDDFQN 436 (1076)
Q Consensus 371 ~~~~--------~--~~l~~i~~~l~~--~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~--~~l~~~~~ 436 (1076)
+... . ..+..+++.+.. .+.++|+.|.---...+.++...+..+- ++++.++.+.+ .++.+ ++
T Consensus 472 ~~~~~~~nsgd~s~~~vl~~~~~ll~tsqv~~h~h~lVqLlfmE~ivRY~kff~~es--q~ip~vL~aFld~rglhn-~n 548 (980)
T KOG2021|consen 472 KNNYFGLNSGDISTSQVLFLNELLLMTSQVLAHDHELVQLLFMELIVRYNKFFSTES--QKIPLVLNAFLDSRGLHN-KN 548 (980)
T ss_pred ccccccccCccccHHHHHHHHHHHHHHcccccCCchHHHHHHHHHHHHHHHHHhcch--hhhHHHHHHHccchhccc-cc
Confidence 5311 1 122234444433 2468899999888888888888776543 56677777766 35677 88
Q ss_pred hhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcC------------chhHHHHHHHHHHHHHHHh---HhhHH
Q 001442 437 PRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNG------------KQMVQEGALTALASVADSS---QEHFQ 501 (1076)
Q Consensus 437 ~~v~~~a~~aL~~l~~~~~~~~l~~~l~~ll~~l~~~l~~~------------~~~v~~~al~ai~~l~~~~---~~~~~ 501 (1076)
.+||.+|.+.+.+|++.+... +.||.+.++..+-.+|... ..+-+-..++++|-++..- .+.-.
T Consensus 549 e~Vr~RawYLF~RfVKlLkkq-lvpfie~iln~iqdlL~~~vtt~N~~s~~lt~fddqlyIfEtiGviI~l~n~paE~qa 627 (980)
T KOG2021|consen 549 ENVRLRAWYLFTRFVKLLKKQ-LVPFIEEILNKIQDLLHIKVTTINAQSDNLTIFDDQLYIFETIGVIITLNNSPAELQA 627 (980)
T ss_pred cccchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcCcCCCcCccccccccccccceeeecceEEEeCCCCCHHHHH
Confidence 999999999999999998855 6799999999999988422 1122334566777665421 12223
Q ss_pred hhHhhhHHHHHHHH-----hc-cCCchhhhhHH----HHHHHHHHHHHHhch-----hhh--hhhHHHHHHHHHHHhcCC
Q 001442 502 KYYDAVMPFLKAIL-----VN-ATDKSNRMLRA----KSMECISLVGMAVGK-----DKF--RDDAKQVMEVLMSLQGSQ 564 (1076)
Q Consensus 502 ~~~~~i~~~L~~~l-----~~-~~~~~~~~lr~----~a~~~l~~i~~~~g~-----~~~--~~~~~~ii~~l~~~~~~~ 564 (1076)
.|++.++..+..-. .. -.+++...... .++-++|.+++.... +.. .--+..+.+.++.... .
T Consensus 628 ay~~~litpl~~~~~igl~~a~lasde~~pv~Ia~c~~~lmaig~lakgf~~rlvt~~qvg~~~vf~~~ldvil~~ls-~ 706 (980)
T KOG2021|consen 628 AYANTLITPLILDQIIGLLFAQLASDEASPVVIAECHHILMAIGTLAKGFHIRLVTENQVGNMVVFSNILDVILVTLS-F 706 (980)
T ss_pred HHHhcccChHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHhhcccccCcchhcccHHHHHHHHHHHHHHHHh-h
Confidence 45555444322110 00 01222222211 233345555543220 000 0112233333332211 1
Q ss_pred CCCCChhhHHHHHHHHHHHHHhccCcccchhhhhHHHHHhc
Q 001442 565 METDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSA 605 (1076)
Q Consensus 565 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~i~~~ll~~~ 605 (1076)
+...+.+|+.+-.+++++..++|+++.||+|..++.+++..
T Consensus 707 f~k~E~iRsavrft~hRmI~~lg~~vlPfipklie~lL~s~ 747 (980)
T KOG2021|consen 707 FNKFENIRSAVRFTFHRMIPILGNKVLPFIPKLIELLLSST 747 (980)
T ss_pred ccccchhHHHHHHHHHHHHHhcchhhhcchHHHHHHHHhcC
Confidence 22346789999899999999999999999999999988654
No 24
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.79 E-value=3.4e-14 Score=176.91 Aligned_cols=673 Identities=14% Similarity=0.150 Sum_probs=397.7
Q ss_pred hHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccCcHHHHHh-HHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHhhc
Q 001442 190 LLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQ-LVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARE 268 (1076)
Q Consensus 190 l~p~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~-l~~l~~~l~~~~~~~~~~~~~r~~al~~l~~l~~~~~ 268 (1076)
.+|.++..| .+++..++..+..++..+.... +.-... ....++.++.++++. +.+.|..|...+..++....
T Consensus 59 aIP~LV~lL----~sg~~~vk~nAaaaL~nLS~~e-~nk~~Iv~~GaIppLV~LL~sG--s~eaKe~AA~AL~sLS~~~~ 131 (2102)
T PLN03200 59 AMPLLVSLL----RSGTLGAKVNAAAVLGVLCKEE-DLRVKVLLGGCIPPLLSLLKSG--SAEAQKAAAEAIYAVSSGGL 131 (2102)
T ss_pred cHHHHHHHH----cCCCHHHHHHHHHHHHHHhcCH-HHHHHHHHcCChHHHHHHHHCC--CHHHHHHHHHHHHHHHcCcc
Confidence 455555554 5678888888888888887542 111111 145666777777543 67889999999999987310
Q ss_pred ccchhhccchhh-HHHHHHHHHHhhcCCCCCccccCCCCCCcccCCCCchhhHHHHHHHHHHHcCCC--cc-hHHHHHHH
Q 001442 269 RAPGMMRKLPQF-INRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGN--TI-VPVASEQL 344 (1076)
Q Consensus 269 ~~~~~~~~~~~~-~~~l~~~l~~~l~~~~dd~~~~~~~~e~~d~~e~~~~~~a~~~l~~l~~~~~~~--~~-~~~l~~~l 344 (1076)
. ...+. .-. -...+|.|+..+...... +......+..+|..|+..-+.. .+ -...+|.+
T Consensus 132 ~--D~~~~-~I~v~~GaVp~Lv~lL~~gsk~--------------d~~L~~~Av~AL~nLs~~~en~~~~IIeaGaVp~L 194 (2102)
T PLN03200 132 S--DHVGS-KIFSTEGVVPSLWDQLQPGNKQ--------------DKVVEGLLTGALRNLCGSTDGFWSATLEAGGVDIL 194 (2102)
T ss_pred h--hhhhh-hhhhhcCChHHHHHHHhCCchh--------------hHHHHHHHHHHHHHHhcCccchHHHHHHcCCHHHH
Confidence 0 00000 001 145677777776543100 1112334566777777654311 11 12256677
Q ss_pred HHhhcCCChhHHHHHHHHHHHHHhhcHHHHHHhHH-HHHHHHHhhCCC-CChhHHHHHHHHHHHhhhhhchhHHhhhhhh
Q 001442 345 PAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLE-QVLSMVLNSFRD-PHPRVRWAAINAIGQLSTDLGPDLQNQFHPQ 422 (1076)
Q Consensus 345 ~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~-~i~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ 422 (1076)
.+.+++.+...+..|+.++..++.+.++.....+. ..+|.+++.+++ +++.+|..|.|+|+.++......-..-.-..
T Consensus 195 V~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL~nLAs~s~e~r~~Iv~aG 274 (2102)
T PLN03200 195 VKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQSKEAKQAIADAG 274 (2102)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHccCCChHHHHHHHHHHHHHhcCCHHHHHHHHHCC
Confidence 77888889999999999999888776653332222 457888888864 5679999999999999975322111112345
Q ss_pred hHHHHHhhccCCCC---------hhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcC-chhHHHHHHHHHHHH
Q 001442 423 VLPALAGAMDDFQN---------PRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNG-KQMVQEGALTALASV 492 (1076)
Q Consensus 423 ll~~l~~~l~~~~~---------~~v~~~a~~aL~~l~~~~~~~~l~~~l~~ll~~l~~~l~~~-~~~v~~~al~ai~~l 492 (1076)
.+|.|++.+.. ++ ..+++.|.++|.+++... +.+++.|...+++. +......++.+++.+
T Consensus 275 gIp~LI~lL~s-p~~e~~~~~~~~~Lqe~AvwALsNIcgg~---------~~ll~~L~~ll~s~rd~~~~ada~gALayl 344 (2102)
T PLN03200 275 GIPALINATVA-PSKEFMQGEFAQALQENAMGALANICGGM---------SALILYLGELSESPRSPAPIADTLGALAYA 344 (2102)
T ss_pred CHHHHHHHHhC-cchhhhccccchHHHHHHHHHHHHHhCCc---------hhhHHHHHHhhcccchHHHHHHHHhhHHHH
Confidence 67888877765 33 345899999999999664 34667777776654 223333444555555
Q ss_pred HHHhHhhH--HhhH--hhhHHHHHHHHhccCCchhhhhHHHHHHHHHHHHHHhchhhhhhhH--HHHHHHHHHHhcCCCC
Q 001442 493 ADSSQEHF--QKYY--DAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDA--KQVMEVLMSLQGSQME 566 (1076)
Q Consensus 493 ~~~~~~~~--~~~~--~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~g~~~~~~~~--~~ii~~l~~~~~~~~~ 566 (1076)
........ ..-+ ..+.+.|.+++.... ....+..+.+++..+. |.-.+...+ .+.++.+..+...
T Consensus 345 l~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~---p~~vqe~V~eALasl~---gN~~l~~~L~~~daik~LV~LL~~--- 415 (2102)
T PLN03200 345 LMVFDSSAESTRAFDPTVIEQILVKLLKPRD---TKLVQERIIEALASLY---GNAYLSRKLNHAEAKKVLVGLITM--- 415 (2102)
T ss_pred HHhcCCchhhhhhccccccHHHHHHHhCCCC---CchhHHHHHHHHHHhc---CChHHHHHHHhccchhhhhhhhcc---
Confidence 43332211 1111 235577777776532 2223445566664422 111111111 1334444554332
Q ss_pred CCChhhHHHHHHHHHHHHHhccCcccch-hhhhHHHHHhccCCCCccccCCCCCccccCCCCcccchhhcCCceeeecch
Q 001442 567 TDDPTTSYMLQAWARLCKCLGQDFLPYM-SVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTS 645 (1076)
Q Consensus 567 ~~~~~~~~~~~~~~~l~~~~~~~~~~~l-~~i~~~ll~~~~~~~~~~~~~~d~d~~~~~~d~~~~~~~~~~~~~~~v~~~ 645 (1076)
.+...+..+..++..++..-.+...... ...+|.+.+.+...
T Consensus 416 ~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~------------------------------------- 458 (2102)
T PLN03200 416 ATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLS------------------------------------- 458 (2102)
T ss_pred CCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCC-------------------------------------
Confidence 1234566666666666542111111000 12456666666421
Q ss_pred hHHHHHHHHHHHHHHHHHhhhcccccH-HHHHHHhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHH
Q 001442 646 VLEEKATACNMLCCYADELKEGFFPWI-DQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVK 724 (1076)
Q Consensus 646 ~~~~k~~A~~~l~~i~~~~~~~~~p~l-~~~~~~l~~~l~~~~~~~vr~~a~~~l~~L~~~~~~~~~~~~~~~~~~~~~~ 724 (1076)
....+..|+.+++.++....+.-...+ ...++.++++|... +..+|+.|+.+++++.... ...+
T Consensus 459 s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~-~~~iqeeAawAL~NLa~~~--------------~qir 523 (2102)
T PLN03200 459 SEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETG-SQKAKEDSATVLWNLCCHS--------------EDIR 523 (2102)
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhCCc--------------HHHH
Confidence 013356788888888764332211111 24567778888754 7899999999999986411 1123
Q ss_pred HHHH--HHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcCCCCCh
Q 001442 725 QLSD--FIIPALVEALHKEPDTEICASMLDSLNECIQISGPLLDEGQVRSIVDEIKQVITASSSRKRERAERAKAEDFDA 802 (1076)
Q Consensus 725 ~~~~--~i~~~l~~~l~~~~~~~~~~~~l~~l~~~i~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ed~d~ 802 (1076)
..+. ..+|.|++.+++. +.+.+..+..++..++.. + ..+.+.. +..+|.. ++
T Consensus 524 ~iV~~aGAIppLV~LL~sg-d~~~q~~Aa~AL~nLi~~-~---d~~~I~~----Lv~LLls--------------dd--- 577 (2102)
T PLN03200 524 ACVESAGAVPALLWLLKNG-GPKGQEIAAKTLTKLVRT-A---DAATISQ----LTALLLG--------------DL--- 577 (2102)
T ss_pred HHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHhc-c---chhHHHH----HHHHhcC--------------CC---
Confidence 3332 3677888888654 677777888888877653 2 1232322 2222211 00
Q ss_pred HhhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhc-hhh-h--HHHHHHhHhhhhcCCCCHHHHHHHHHHHHHHHHHhhhh
Q 001442 803 EESELIKEENEQEEEVFDQVGEILGTLIKTFKAA-FLP-F--FDELSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREA 878 (1076)
Q Consensus 803 ~~~~~~~e~~e~~~~~~~~~~~~l~~l~~~~~~~-~~~-~--~~~l~~~l~~~l~~~~~~~~r~~al~~l~~l~~~~~~~ 878 (1076)
..+...+.+.++.+....... +.. . -...+|.+..+++ +.+...+..|..++..++......
T Consensus 578 -------------~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~-sgs~~ikk~Aa~iLsnL~a~~~d~ 643 (2102)
T PLN03200 578 -------------PESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLS-SSKEETQEKAASVLADIFSSRQDL 643 (2102)
T ss_pred -------------hhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHc-CCCHHHHHHHHHHHHHHhcCChHH
Confidence 122334455555554432221 100 0 0124667777774 557788889999999998765443
Q ss_pred hHh-hHHhHHHHHHhhccCCChhHHhhhhHHHHHHHhhcCCC-chHHH-HHHHHHHHHhhcCCCCCChhhhhHHHHHHHH
Q 001442 879 ALK-YYETYLPFLLEACNDENQDVRQAAVYGLGVCAEFGGSV-VKPLV-GEALSRLNVVIRHPNALQPENLMAYDNAVSA 955 (1076)
Q Consensus 879 ~~~-~~~~ll~~l~~~l~~~~~~vr~~a~~~lg~l~~~~~~~-~~~~~-~~il~~L~~~l~~~~~~~~~~~~~~~na~~a 955 (1076)
... .....+|.++..+.+.+.+++..|+++|+.++..+.+. ...++ ..+++.|.+++..+ +..+++.|+.+
T Consensus 644 ~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~------d~~v~e~Al~A 717 (2102)
T PLN03200 644 CESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSS------SIEVAEQAVCA 717 (2102)
T ss_pred HHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCC------ChHHHHHHHHH
Confidence 222 34677899999999999999999999999999855432 11222 23688899988765 34789999999
Q ss_pred HHHHHhhcCCCC--CHhhHHHHHHhhCCCCCcHHHHHHHHHHHHHHHhhcC
Q 001442 956 LGKICQFHRDSI--DAAQVVPAWLNCLPIKGDLIEAKIVHEQLCSMVERSD 1004 (1076)
Q Consensus 956 l~~i~~~~~~~~--~~~~~l~~~l~~lp~~~d~~e~~~~~~~l~~li~~~~ 1004 (1076)
++.++....... .-...++.+...|.-. ..+.++++...|..|+.+.+
T Consensus 718 LanLl~~~e~~~ei~~~~~I~~Lv~lLr~G-~~~~k~~Aa~AL~~L~~~~~ 767 (2102)
T PLN03200 718 LANLLSDPEVAAEALAEDIILPLTRVLREG-TLEGKRNAARALAQLLKHFP 767 (2102)
T ss_pred HHHHHcCchHHHHHHhcCcHHHHHHHHHhC-ChHHHHHHHHHHHHHHhCCC
Confidence 999998764432 2345678888888653 34668888999999996544
No 25
>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]
Probab=99.77 E-value=2.2e-14 Score=159.97 Aligned_cols=506 Identities=15% Similarity=0.164 Sum_probs=287.2
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHcc-CCCHHHHHHHHHHHHHhcccCCCCcccC-----C
Q 001442 23 PFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQR-SPHPEARAMAAVLLRKLLTRDDSFLWPR-----L 96 (1076)
Q Consensus 23 ~l~~lL~~~~s~d~~~r~~Ae~~L~~~~~~~p~~~~~~L~~il~~-~~~~~~R~~a~v~Lk~~i~~~~~~~w~~-----l 96 (1076)
.....+....|+|+..++.||+.|+++.. +++ |..-|..+..+ ..+-.+|..|++.+||.|.++ |.. +
T Consensus 5 ~vv~~~~~aqs~~p~s~k~AE~~Lrqwe~-q~g-F~~kL~~I~~~~~~~m~lR~~a~i~fkn~I~~~----W~~~~~~~i 78 (947)
T COG5657 5 PVVKQLDLAQSPDPPSVKCAEERLRQWEK-QHG-FALKLLSINLSAFNSMSLRWAALIQFKNYIDKH----WREENGNSI 78 (947)
T ss_pred HHHHHHHhhcCCCCchHhhHHHHHHhhhc-ccc-HHHHHHHHHhccccchhHHHHHHHHHHhhHHHH----hhhhcccCC
Confidence 34445677789999999999999999999 666 77888888876 578899999999999999998 753 6
Q ss_pred CHhHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhcccCCCCcchhHHHHHHhhcCCCHHHHHHHHHHHHHHHHH---
Q 001442 97 SLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLIIN--- 173 (1076)
Q Consensus 97 ~~~~~~~lk~~Ll~~l~~~~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~~~~~~~r~~al~~L~~l~~~--- 173 (1076)
.++.+..||..++..+.+ .+....-+.+.+++.||+.++| .+||+++|.|...+++.+...-.+.+.++..++..
T Consensus 79 ~p~e~v~IR~~l~~lii~-s~n~l~iq~a~avs~IA~~DfP-deWpTL~~DL~~~Ls~~D~~tn~~~L~~~h~Ifk~~r~ 156 (947)
T COG5657 79 LPDENVLIRDELFSLIIS-SSNQLQIQNALAVSRIARLDFP-DEWPTLVPDLLSLLSEKDMVTNENSLRVLHHIFKRLRR 156 (947)
T ss_pred CCccchHHHHHHHHHHHc-ccchHHHHHHHHHHHHHhccCc-ccchhHHHHHHhhhcccchHHHHHHHHHHHHHHHHHhh
Confidence 677777999999999874 5666666899999999999999 79999999999999997776666666666555110
Q ss_pred ---------------------HH-HhhC------------------------------CcchHhHHhhhHHHHHHHHHHH
Q 001442 174 ---------------------FI-QCLT------------------------------SSADRDRFQDLLPLMMRTLTES 201 (1076)
Q Consensus 174 ---------------------~~-~~l~------------------------------~~~~~~~~~~l~p~~l~~l~~~ 201 (1076)
++ .... -+.-+.-|...++..|......
T Consensus 157 l~Rsd~lf~ei~p~L~~~l~pfl~~~~~~~s~~~~~~~~llslfqv~L~~~r~~~~~~~qdi~eFfEd~l~~~m~~F~kl 236 (947)
T COG5657 157 LFRSDALFLEIAPVLLSILCPFLFSSAYFWSMSENLDESLLSLFQVCLKLIRRYYDLGFQDIPEFFEDNLDKFMEHFCKL 236 (947)
T ss_pred hhccHHHHHHHHHHHHHHHHHHHHhccchhHHhhcchhhHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHH
Confidence 00 0000 0011233445556666666655
Q ss_pred HhCCCHHHHH-------------HHHHHHHHHHccCcHHHHHhHHHHHHHHHHHhcC---CCcchhHHHHHHHHHHHHHH
Q 001442 202 LNNGNEATAQ-------------EALELLIELAGTEPRFLRRQLVDVVGSMLQIAEA---ESLEEGTRHLAIEFVITLAE 265 (1076)
Q Consensus 202 ~~~~~~~~~~-------------~~~~~l~~l~~~~~~~~~~~l~~l~~~l~~~~~~---~~~~~~~r~~al~~l~~l~~ 265 (1076)
+...++..+. ..++.+......+|..+.+.+-..++..+..+.. +..-+.+...++.++....+
T Consensus 237 ls~~~~~lq~~~le~~~~~~l~~~i~e~f~ly~t~yp~~it~li~dfv~~vw~~lttit~~~~~d~Lv~k~l~~l~~v~k 316 (947)
T COG5657 237 LSYSNPVLQKDCLEDCVYFKLKGSICEIFNLYTTKYPEVITYLIYDFVEIVWNLLTTITRPYIRDYLVSKSLTVLINVIK 316 (947)
T ss_pred HhhcchhhhhhhcccceeeeecccHHHHHHHHhhccHHHhhHHHHHHHHHHHHHHHhhcCccccchhhhhHHHHHHHhhc
Confidence 5533333332 3566666667778888887666666665555432 22234455566666666665
Q ss_pred hh--cccchhhccchhhHHHHHHHHHHhhc--CCCCCccccCCCCC-----CcccCCCCchhhHHHHHHHHHHHcCCCcc
Q 001442 266 AR--ERAPGMMRKLPQFINRLFAILMSMLL--DIEDDPLWHSAETE-----DEDAGESSNYSVGQECLDRLAIALGGNTI 336 (1076)
Q Consensus 266 ~~--~~~~~~~~~~~~~~~~l~~~l~~~l~--~~~dd~~~~~~~~e-----~~d~~e~~~~~~a~~~l~~l~~~~~~~~~ 336 (1076)
+. +..+-......+.+.+++..++.... ..+|-+.|..+..+ -..+-+...+.++...+..+-...| +-+
T Consensus 317 ~~irk~~e~l~n~~~~~~~~lvd~l~l~n~~lreed~E~~~ddp~eyire~s~~dye~~vr~~~~~~l~~~f~~~~-~i~ 395 (947)
T COG5657 317 YPIRKTAEVLSNVSENLINNLVDLLILPNLILREEDLEEWEDDPLEYIREQSKTDYEVNVRPCIENELKDLFDVFG-RIA 395 (947)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHhhhccccCcccccccccCHHHHHHhhccccchhhhhHHHHHHHHHHHHHHh-hHh
Confidence 21 11111111112344444444433221 12233445432211 0011233345566667776666666 556
Q ss_pred hHHHHHHHHHhhcCCC---hhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCC----ChhH-HHHHHHHHHHhh
Q 001442 337 VPVASEQLPAYLAAPE---WQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDP----HPRV-RWAAINAIGQLS 408 (1076)
Q Consensus 337 ~~~l~~~l~~~l~~~~---~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~----~~~v-r~~a~~~l~~l~ 408 (1076)
.+.+...+.+....++ -..+.-+++++..+....-..+-...+-.-..+.+.+.++ +.++ |..+...+....
T Consensus 396 ~~~~~~~ie~~~t~P~~~d~~~~~~a~~a~~g~g~~av~~~~~~v~~~~~~~~pd~~s~~~~~~~ri~~~~i~~i~~~r~ 475 (947)
T COG5657 396 VGHELTVIESEATTPNILDEARQLFAAYASFGLGVEAVNRMVDFVKFLGSIIYPDLLSPNEIIHLRILRSRIAYILTFRN 475 (947)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhcCccccCcccCceeEEehhccchheechh
Confidence 6667766666555441 1222233333322222111122223333334444444443 2333 222222222211
Q ss_pred hhhchhHH-hhh-hhhhHHHHHhhccC-CCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCc-hhHHHH
Q 001442 409 TDLGPDLQ-NQF-HPQVLPALAGAMDD-FQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGK-QMVQEG 484 (1076)
Q Consensus 409 ~~~~~~~~-~~~-~~~ll~~l~~~l~~-~~~~~v~~~a~~aL~~l~~~~~~~~l~~~l~~ll~~l~~~l~~~~-~~v~~~ 484 (1076)
.....+.. ..+ ..+..-..+....| ..--.++.+....+....-.-. + ..+.+++++-.+...+.++. ...+.-
T Consensus 476 ~l~~~~~~~~~fl~~~~F~~yt~~~id~~~lLT~~~a~~t~~~~~n~~~~-~-~~~~lenl~~lvl~~~as~~~~~e~~~ 553 (947)
T COG5657 476 QLDSSELSESKFLASQFFVNYTTACIDAVVLLTTREAYSTIFDDWNFSVC-S-KIGLLENLILLVLSLMASPSSLEEREF 553 (947)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcccccc-c-ccccHHHHHHHHHHhcCCcchhHHHHH
Confidence 11111100 011 11111111212222 0112344444444444432221 1 23456677766666666654 567888
Q ss_pred HHHHHHHHHHHhHhhHHhhHhhhHHHHHHHHhccC-CchhhhhHHHHHHHHHHHHH
Q 001442 485 ALTALASVADSSQEHFQKYYDAVMPFLKAILVNAT-DKSNRMLRAKSMECISLVGM 539 (1076)
Q Consensus 485 al~ai~~l~~~~~~~~~~~~~~i~~~L~~~l~~~~-~~~~~~lr~~a~~~l~~i~~ 539 (1076)
.+.+|+++....++...|..+.+++.|.+++.... ++....+-...++.++.++.
T Consensus 554 ll~~i~rii~~~~~~i~pl~~~il~~L~~lv~~~~knps~p~~~h~~fe~I~al~~ 609 (947)
T COG5657 554 LLQLISRIIIIDPELIAPLGSEILQLLDNLVEINAKNPSNPQFAHYTFEDIGALVF 609 (947)
T ss_pred HHHHHHHHHHhCHHhhhhhHHHHHHHHHHHHHHHccCCccHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998877632 33333333445555555553
No 26
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=99.76 E-value=9.7e-12 Score=132.41 Aligned_cols=465 Identities=19% Similarity=0.267 Sum_probs=291.5
Q ss_pred CChHHHHHHHHHhcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHccCCCHHHHHHHHHHHHHhcccCCCCcccCCCH
Q 001442 19 PDSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSL 98 (1076)
Q Consensus 19 ~~~~~l~~lL~~~~s~d~~~r~~Ae~~L~~~~~~~p~~~~~~L~~il~~~~~~~~R~~a~v~Lk~~i~~~~~~~w~~l~~ 98 (1076)
.|.+-+.+++...+.+|+..+++|++.|.++++ .|++| .-.-+||..+..|+.+..|..+|.+.|..+ |.-++.
T Consensus 11 LdiallDkVVttfyqg~g~~q~qAq~iLtkFq~-~PdaW-tkad~IL~~S~~pqskyiALs~LdklIttk----Wkllp~ 84 (1053)
T COG5101 11 LDIALLDKVVTTFYQGDGRKQEQAQRILTKFQE-LPDAW-TKADYILNNSKLPQSKYIALSLLDKLITTK----WKLLPE 84 (1053)
T ss_pred cCHHHHHHHHHHhcCCCchhHHHHHHHHHHHHh-CchHH-HHHHHHHhcccCcchhhhHHHHHHHHHHhh----hhhCCc
Confidence 578889999999999999999999999999999 89986 777889999999999999999999999998 999999
Q ss_pred hHHHHHHHHHHHHHhh-cc-------hhhHHHHHHHHHHHHHhcccCCCCcchhHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 001442 99 HTQSSLKSMLLQSIQL-ES-------AKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQL 170 (1076)
Q Consensus 99 ~~~~~lk~~Ll~~l~~-~~-------~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~~~~~~~r~~al~~L~~l 170 (1076)
+.|.+||+-..+.+-. .+ .+.+-+.+-..+-.|++.+|| ..||+++|.+++..+ .+..+.+..+.+|..+
T Consensus 85 ~~r~GiRnyvv~~vI~~s~dd~v~~~qk~~lnkldltLvqIlKqeWP-~nWP~FIpeli~~S~-~s~~vCeNnmivLklL 162 (1053)
T COG5101 85 GMRQGIRNYVVQLVIEKSQDDKVRDKQKYVLNKLDLTLVQILKQEWP-RNWPTFIPELINVSQ-ISMEVCENNMIVLKLL 162 (1053)
T ss_pred HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhHHHHHHHHhcc-cccchhhHHHHhhcc-chHHHHhccHHHHHHh
Confidence 9999999998887642 12 233455667778889999999 799999999998766 5667777777776655
Q ss_pred HHHHH-------------------------------HhhC---Ccc-------hHhHHhhhHH-------HHHHHHHHHH
Q 001442 171 IINFI-------------------------------QCLT---SSA-------DRDRFQDLLP-------LMMRTLTESL 202 (1076)
Q Consensus 171 ~~~~~-------------------------------~~l~---~~~-------~~~~~~~l~p-------~~l~~l~~~~ 202 (1076)
-..++ +.++ +++ ....|-.++| .++..+...+
T Consensus 163 sEEvFdfSaeqmTq~k~~~LkNqm~~EF~qIF~lc~qiLE~~~~~SLi~ATLesllrfl~wiPl~yIfeTnIieLv~~~f 242 (1053)
T COG5101 163 SEEVFDFSAEQMTQVKKRLLKNQMKIEFPQIFGLCKQILEYSRDESLIEATLESLLRFLEWIPLDYIFETNIIELVLEHF 242 (1053)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHh
Confidence 11111 1111 110 1112222222 2223222222
Q ss_pred hCCCHHHHHHHHHHHHHHHccC--c-------HHHHHhHH---------------------------------HHHHH--
Q 001442 203 NNGNEATAQEALELLIELAGTE--P-------RFLRRQLV---------------------------------DVVGS-- 238 (1076)
Q Consensus 203 ~~~~~~~~~~~~~~l~~l~~~~--~-------~~~~~~l~---------------------------------~l~~~-- 238 (1076)
. .-++.|..++.||.+++... | ..+.-|+. .+..+
T Consensus 243 ~-s~pd~r~~tl~CLtEi~~L~~~pq~n~~~~r~~v~~fq~i~~~~~~s~~p~~~d~~e~Y~~~~~neq~Fvq~LA~fL~ 321 (1053)
T COG5101 243 N-SMPDTRVATLSCLTEIVDLGRHPQENAEKERILVIHFQCIEFLKMYSNKPQEEDIYEVYGGMDKNEQIFVQKLAQFLS 321 (1053)
T ss_pred c-cCCchhHHHHHHHHHHHhhccCcccchhhhhHHHHHHHHHHHHHHHhccchHHHHHHHHcccChhHHHHHHHHHHHHH
Confidence 2 24556667777777666432 1 00000110 01000
Q ss_pred -----HHHHhcCCC------------------cchhHHHHHHHHHHHHHHh--hc--c---------------------c
Q 001442 239 -----MLQIAEAES------------------LEEGTRHLAIEFVITLAEA--RE--R---------------------A 270 (1076)
Q Consensus 239 -----l~~~~~~~~------------------~~~~~r~~al~~l~~l~~~--~~--~---------------------~ 270 (1076)
-+..+++++ .+.++-..|++.|..++-. .+ + .
T Consensus 322 s~~~~~~~lLE~~e~~e~llnah~YLiqiSrInereiFkt~leyW~klVadLy~E~q~lp~tem~Pli~ls~~s~~istn 401 (1053)
T COG5101 322 SLYEVYISLLEAREMAENLLNAHGYLIQISRINEREIFKTALEYWNKLVADLYSEFQRLPATEMSPLIQLSVGSQAISTN 401 (1053)
T ss_pred HHHHHHHHHhcChhHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHhCcccccCcchhccccchhccCC
Confidence 011111110 1234455677777765531 00 0 1
Q ss_pred chhhcc-------chhhHHHHHHHHHHhhcCCCCCccccCCCCCCc-------ccCCCCchhhHHHHHHHHHHHcCCCcc
Q 001442 271 PGMMRK-------LPQFINRLFAILMSMLLDIEDDPLWHSAETEDE-------DAGESSNYSVGQECLDRLAIALGGNTI 336 (1076)
Q Consensus 271 ~~~~~~-------~~~~~~~l~~~l~~~l~~~~dd~~~~~~~~e~~-------d~~e~~~~~~a~~~l~~l~~~~~~~~~ 336 (1076)
|+.... ....++++.-+++..|..+++- .-..+++.| |.|.-..++...++|-.++...- ...
T Consensus 402 pn~~~~~pLrkhiY~~ilsqLrlvlienMvrPEEV--liVendegEivRefvketDtI~lYksmRevLvyLthL~v-~Dt 478 (1053)
T COG5101 402 PNQDSTKPLRKHIYIGILSQLRLVLIENMVRPEEV--LIVENDEGEIVREFVKETDTIELYKSMREVLVYLTHLIV-DDT 478 (1053)
T ss_pred cchhcccchHHHHHHHHHHHHHHHHHHcCCCcceE--EEEECCCcHHHHHHhccccHhHHHHHHhhHHHHHhhhhh-hhH
Confidence 111110 0112334444555555544321 111111111 11222345555666666654322 223
Q ss_pred hHHHHHHHHHhhcCC--ChhHHHHHHHHHHHHHhhcHHHHH-HhHHHHHHHHH-----hhCCCCChhHHHHHHHHHHHhh
Q 001442 337 VPVASEQLPAYLAAP--EWQKHHAALIALAQIAEGCAKVMV-KNLEQVLSMVL-----NSFRDPHPRVRWAAINAIGQLS 408 (1076)
Q Consensus 337 ~~~l~~~l~~~l~~~--~~~~r~aal~~l~~l~~~~~~~~~-~~l~~i~~~l~-----~~l~d~~~~vr~~a~~~l~~l~ 408 (1076)
-..+...+...+... +|+.-..-++++|+++-...+... ..+-.++..++ +..+|....|.......+|++-
T Consensus 479 e~~mi~Klarq~dg~EWsw~nlNtLcWAIGSISGamsE~~EkrF~VnviKdLL~LcemKrgKdnKAVvASnIMyvvGQYp 558 (1053)
T COG5101 479 EKYMIGKLARQLDGKEWSWNNLNTLCWAIGSISGAMSEVNEKRFFVNVIKDLLALCEMKRGKDNKAVVASNIMYVVGQYP 558 (1053)
T ss_pred HHHHHHHHHHHhcCCccchhhHhHHHHHHhcccchhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhecceeeeeccch
Confidence 333444444444444 477888899999999877765444 33444444333 3456777777777888899998
Q ss_pred hhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCccc-------ccCchHHHHHHHHHHhhcCchhH
Q 001442 409 TDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEI-------LTPYLDGIVSKLLVLLQNGKQMV 481 (1076)
Q Consensus 409 ~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~aL~~l~~~~~~~~-------l~~~l~~ll~~l~~~l~~~~~~v 481 (1076)
+++.... .++..++..|++.++. .+.-|+.-||..+-.+++.|+.+. -.|+...++..+-+.-.+-.+.-
T Consensus 559 RFLkahw--~FLkTVv~KLFEFMhE-~HEGvqDMACDtFiKIvqKC~~hFv~Qq~gesEpFI~~Iirnl~ktT~dL~pqQ 635 (1053)
T COG5101 559 RFLKAHW--SFLKTVVKKLFEFMHE-DHEGVQDMACDTFIKIVQKCPVHFVTQQEGESEPFIVYIIRNLPKTTGDLEPQQ 635 (1053)
T ss_pred HHHHHHH--HHHHHHHHHHHHHHhh-hhhhHHhhhHHHHHHHHHhCcHHHhhcCCCCCCcHHHHHHHhhhhhcccCChHH
Confidence 8887765 6889999999999988 788999999999999998876432 25777777777777666666666
Q ss_pred HHHHHHHHHHHHHHhHh
Q 001442 482 QEGALTALASVADSSQE 498 (1076)
Q Consensus 482 ~~~al~ai~~l~~~~~~ 498 (1076)
+.....|.|.++...+.
T Consensus 636 ~htfYeAcg~vIse~p~ 652 (1053)
T COG5101 636 KHTFYEACGMVISEVPK 652 (1053)
T ss_pred HhHHHHHHhHHHhccch
Confidence 77788888888876654
No 27
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=99.76 E-value=6.4e-15 Score=155.69 Aligned_cols=685 Identities=13% Similarity=0.134 Sum_probs=409.5
Q ss_pred cchhhHHHHHHHHHHHHHhcccCCCCcchhHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhCCcchHhHHhhhHHHH
Q 001442 115 ESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLIINFIQCLTSSADRDRFQDLLPLM 194 (1076)
Q Consensus 115 ~~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~~~~~~~r~~al~~L~~l~~~~~~~l~~~~~~~~~~~l~p~~ 194 (1076)
...+..|.....++..=+....+..-++.++|-++..-- +..-|+....++..++ ..+.+.. ..++..+
T Consensus 179 NG~~~mR~~~lRiLtdkav~fg~~~vfnkvLp~lm~r~L--eDqerhl~vk~idr~L----y~lddl~-----~pyvhkI 247 (975)
T COG5181 179 NGGKRMRMEGLRILTDKAVNFGAAAVFNKVLPMLMSREL--EDQERHLVVKLIDRLL----YGLDDLK-----VPYVHKI 247 (975)
T ss_pred cCCchhhHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhh--hhhhhHhHHHHHHHHH----Hhccccc-----ccceeeE
Confidence 457778888888887777655443355667776665332 2345666666665553 3332110 1122222
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHccCcHHHHHhHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHhhcccchhh
Q 001442 195 MRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMM 274 (1076)
Q Consensus 195 l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~ 274 (1076)
+-++...+-+++...+...-+++.+++...+- ...+..+-.-.. +.++-+|...-.....+++. -
T Consensus 248 LvVv~pllided~~~r~~g~eii~nL~~~~Gl------~~~vs~mrpDi~--~~deYVRnvt~ra~~vva~a----l--- 312 (975)
T COG5181 248 LVVVGPLLIDEDLKRRCMGREIILNLVYRCGL------GFSVSSMRPDIT--SKDEYVRNVTGRAVGVVADA----L--- 312 (975)
T ss_pred EEEeeccccCccHHHhcccHHHHHHHHHHhcc------ceeeeeccCCcc--cccHHHHHHHHHHHHHHHHh----h---
Confidence 33333344466777777777777777654431 111111111111 23566787777777777763 1
Q ss_pred ccchhhHHHHHHHHHHhhcCCCCCccccCCCCCCcccCCCCchhhHHHHHHHHHHHcCCCcchHH---HHHHHHHhhcCC
Q 001442 275 RKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPV---ASEQLPAYLAAP 351 (1076)
Q Consensus 275 ~~~~~~~~~l~~~l~~~l~~~~dd~~~~~~~~e~~d~~e~~~~~~a~~~l~~l~~~~~~~~~~~~---l~~~l~~~l~~~ 351 (1076)
-++.++|.+-... .. -. .|..++.+..+...++..+| ...+++ ++..+...+.+.
T Consensus 313 -----gv~~llpfl~a~c-~S--rk-------------Sw~aRhTgiri~qqI~~llG-~s~l~hl~~l~~ci~~~l~D~ 370 (975)
T COG5181 313 -----GVEELLPFLEALC-GS--RK-------------SWEARHTGIRIAQQICELLG-RSRLSHLGPLLKCISKLLKDR 370 (975)
T ss_pred -----CcHHHHHHHHHHh-cC--cc-------------chhhhchhhHHHHHHHHHhC-ccHHhhhhhHHHHHHHHhhcc
Confidence 1233444432221 11 11 13356778889999998888 556555 455566788888
Q ss_pred ChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhc
Q 001442 352 EWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAM 431 (1076)
Q Consensus 352 ~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l 431 (1076)
+-.+|.-+..+|+.+++.....-...++.++..++.+.+..-..+-.+-+.+.|.+.-.+.|+....+....+..++..+
T Consensus 371 ~~~vRi~tA~alS~lae~~~Pygie~fd~vl~pLw~g~~~hrgk~l~sfLkA~g~iiplm~peYa~h~tre~m~iv~ref 450 (975)
T COG5181 371 SRFVRIDTANALSYLAELVGPYGIEQFDEVLCPLWEGASQHRGKELVSFLKAMGFIIPLMSPEYACHDTREHMEIVFREF 450 (975)
T ss_pred ceeeeehhHhHHHHHHHhcCCcchHHHHHHHHHHHHHHHhcCCchHHHHHHHhccccccCChHhhhhhHHHHHHHHHHHh
Confidence 88999999999999999776544467888888899888766666667778888888877777775566778889999999
Q ss_pred cCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcC----chhHHHHHHHHHHHHHHHhHhhHHhhHhhh
Q 001442 432 DDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNG----KQMVQEGALTALASVADSSQEHFQKYYDAV 507 (1076)
Q Consensus 432 ~~~~~~~v~~~a~~aL~~l~~~~~~~~l~~~l~~ll~~l~~~l~~~----~~~v~~~al~ai~~l~~~~~~~~~~~~~~i 507 (1076)
+. ++...+. ......+.|...+...-..+.+++.|.++...-.. +...-+....+-..+|...|.. .+
T Consensus 451 ~s-pdeemkk-~~l~v~~~C~~v~~~tp~~lr~~v~pefF~~fw~rr~A~dr~~~k~v~~ttvilAk~~g~~------~v 522 (975)
T COG5181 451 KS-PDEEMKK-DLLVVERICDKVGTDTPWKLRDQVSPEFFSPFWRRRSAGDRRSYKQVVLTTVILAKMGGDP------RV 522 (975)
T ss_pred CC-chhhcch-hHHHHHHHHhccCCCCHHHHHHhhcHHhhchHHHhhhcccccccceeehhHHHHHHHcCCh------HH
Confidence 88 6555433 23445556666554321123456666666554321 1111222233334444444431 23
Q ss_pred HHHHHHHHhccCCchhhhhHHHHHHHHHHHHHHhchhhhhhhH-HHHHHHHHH-HhcCCCCCCChhhHHHHHHHHHHHHH
Q 001442 508 MPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDA-KQVMEVLMS-LQGSQMETDDPTTSYMLQAWARLCKC 585 (1076)
Q Consensus 508 ~~~L~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~g~~~~~~~~-~~ii~~l~~-~~~~~~~~~~~~~~~~~~~~~~l~~~ 585 (1076)
...+...+. ++....|.....+.+.+...+|.-.|..-. ...++.++. +++.. .--.-++.||+.+...
T Consensus 523 ~~kil~~~~----De~ep~r~m~a~~vsri~~~lg~~~~dErleerl~d~il~Afqeq~-----~t~~~il~~f~tv~vs 593 (975)
T COG5181 523 SRKILEYYS----DEPEPYRKMNAGLVSRIFSRLGRLGFDERLEERLYDSILNAFQEQD-----TTVGLILPCFSTVLVS 593 (975)
T ss_pred HHHHHhhcc----CCcchhhhhhhHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhcc-----ccccEEEecccceeee
Confidence 333333333 233445655566666666666654454332 345555554 33321 1122356678888777
Q ss_pred hccCcccchhhhhHHHHHhccCCCCccccCCCCCccccCCCCcccchhhcCCceeeecchhHHHHHHHHHHHHHHHHHhh
Q 001442 586 LGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATACNMLCCYADELK 665 (1076)
Q Consensus 586 ~~~~~~~~l~~i~~~ll~~~~~~~~~~~~~~d~d~~~~~~d~~~~~~~~~~~~~~~v~~~~~~~k~~A~~~l~~i~~~~~ 665 (1076)
++-...||++.++..+++.+..+|. +.|+-|+++.+.++..++
T Consensus 594 l~~r~kp~l~~ivStiL~~L~~k~p-------------------------------------~vR~~aadl~~sl~~vlk 636 (975)
T COG5181 594 LEFRGKPHLSMIVSTILKLLRSKPP-------------------------------------DVRIRAADLMGSLAKVLK 636 (975)
T ss_pred hhhccCcchHHHHHHHHHHhcCCCc-------------------------------------cHHHHHHHHHHHHHHHHH
Confidence 8888999999999999999976542 124556666666665443
Q ss_pred ---h-cccccHHHHHHHhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHccC
Q 001442 666 ---E-GFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVEALHKE 741 (1076)
Q Consensus 666 ---~-~~~p~l~~~~~~l~~~l~~~~~~~vr~~a~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~ 741 (1076)
+ ....++.. .+.+.+... .+++-....+++..+.+.... .+ .+.-++.++|.|...+...
T Consensus 637 ~c~e~~~l~klg~---iLyE~lge~-ypEvLgsil~Ai~~I~sv~~~--------~~----mqpPi~~ilP~ltPILrnk 700 (975)
T COG5181 637 ACGETKELAKLGN---ILYENLGED-YPEVLGSILKAICSIYSVHRF--------RS----MQPPISGILPSLTPILRNK 700 (975)
T ss_pred hcchHHHHHHHhH---HHHHhcCcc-cHHHHHHHHHHHHHHhhhhcc--------cc----cCCchhhccccccHhhhhh
Confidence 2 33333333 244555543 466666666666665544321 11 1122344666666666543
Q ss_pred CcHHHHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcCCCCChHhhhhhhhhhhhHHHHHH
Q 001442 742 PDTEICASMLDSLNECIQISGP-LLDEGQVRSIVDEIKQVITASSSRKRERAERAKAEDFDAEESELIKEENEQEEEVFD 820 (1076)
Q Consensus 742 ~~~~~~~~~l~~l~~~i~~~g~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ed~d~~~~~~~~e~~e~~~~~~~ 820 (1076)
...++...+.-+. .+...++ ..+. .+.+..++.++...-. ...+++.
T Consensus 701 -h~Kv~~nti~lvg-~I~~~~peyi~~---rEWMRIcfeLvd~Lks---------------------------~nKeiRR 748 (975)
T COG5181 701 -HQKVVANTIALVG-TICMNSPEYIGV---REWMRICFELVDSLKS---------------------------WNKEIRR 748 (975)
T ss_pred -hHHHhhhHHHHHH-HHHhcCcccCCH---HHHHHHHHHHHHHHHH---------------------------hhHHHHH
Confidence 2233322222222 2222232 2332 2333333333322110 1256788
Q ss_pred HHHHHHHHHHHHhhhchhhhHHHHHHhHhhhhcCCCCHHHHHHHHHHHHHHHHHhhhhhHhhHHhHHHHHHhhccCCChh
Q 001442 821 QVGEILGTLIKTFKAAFLPFFDELSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREAALKYYETYLPFLLEACNDENQD 900 (1076)
Q Consensus 821 ~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~ 900 (1076)
.+.+.+|.+.+..|+.= ++..+++.|+ ...-..|...--.++-+.++||+. .++|.++.-.+.++..
T Consensus 749 ~A~~tfG~Is~aiGPqd------vL~~LlnnLk-vqeRq~RvctsvaI~iVae~cgpf------sVlP~lm~dY~TPe~n 815 (975)
T COG5181 749 NATETFGCISRAIGPQD------VLDILLNNLK-VQERQQRVCTSVAISIVAEYCGPF------SVLPTLMSDYETPEAN 815 (975)
T ss_pred hhhhhhhhHHhhcCHHH------HHHHHHhcch-HHHHHhhhhhhhhhhhhHhhcCch------hhHHHHHhcccCchhH
Confidence 99999999999998642 3444444442 222223434444577778888886 7899999999999999
Q ss_pred HHhhhhHHHHHHHhhcCCCchHHHHHHHHHHHHhhcCCCCCChhhhhHHHHHHHHHHHHHhhcCCCCC
Q 001442 901 VRQAAVYGLGVCAEFGGSVVKPLVGEALSRLNVVIRHPNALQPENLMAYDNAVSALGKICQFHRDSID 968 (1076)
Q Consensus 901 vr~~a~~~lg~l~~~~~~~~~~~~~~il~~L~~~l~~~~~~~~~~~~~~~na~~al~~i~~~~~~~~~ 968 (1076)
|.+....++..+.++.++.-..|+..+.+.|..++++.+ ..-|+.|.+.+.++..++++.-+
T Consensus 816 VQnGvLkam~fmFeyig~~s~dYvy~itPlleDAltDrD------~vhRqta~nvI~Hl~Lnc~gtg~ 877 (975)
T COG5181 816 VQNGVLKAMCFMFEYIGQASLDYVYSITPLLEDALTDRD------PVHRQTAMNVIRHLVLNCPGTGD 877 (975)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcccc------hHHHHHHHHHHHHHhcCCCCccc
Confidence 999999999999999999889999999999999998763 57899999999999999887643
No 28
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=99.73 E-value=4.6e-14 Score=152.66 Aligned_cols=480 Identities=15% Similarity=0.178 Sum_probs=314.6
Q ss_pred CCHHHHHHHHHHHHHhcccCCCCcccCCCHhHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhcccCCCC-cchhHHH
Q 001442 69 PHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENG-WPELLPF 147 (1076)
Q Consensus 69 ~~~~~R~~a~v~Lk~~i~~~~~~~w~~l~~~~~~~lk~~Ll~~l~~~~~~~vr~~~~~~i~~ia~~~~~~~~-w~~ll~~ 147 (1076)
..+.+|.--.--....+..+ .| +....+++..-+.|.+..+..+|+......+..+++.+..+. --.++..
T Consensus 29 ~~~~v~~~ml~a~~~~~~~~---~~-----~~v~~l~~~~~~~l~~~~~~~~~~~~~v~~~~~a~~~~~~d~~~~~~~~~ 100 (569)
T KOG1242|consen 29 RRIDVRGNMLEAGEAAINQH---GD-----QNVLNLKPCFEQRLNSLHNDNLRNNVVVLEGTLAFHLQIVDPRPISIIEI 100 (569)
T ss_pred cchhhHHhHHHHHHHHHHhh---hH-----HHHHHHHHHHHHHhccchhHHHhhhhHHHHHHHHHhccccCcchhHHHHH
Confidence 34445544444444444444 13 344556677777787777888999999999999997764332 2335566
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhCCcchHhHHhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccCcHH
Q 001442 148 MFQCVSSDSVKLQESAFLIFAQLIINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRF 227 (1076)
Q Consensus 148 l~~~~~~~~~~~r~~al~~L~~l~~~~~~~l~~~~~~~~~~~l~p~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 227 (1076)
++..+..+.+.+|.....+|..+.... +.. ... .++..+.+.++..+...+..+...+..++...+..
T Consensus 101 ~~~~~~tps~~~q~~~~~~l~~~~~~~-~~~----~~~-------~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i~ 168 (569)
T KOG1242|consen 101 LLEELDTPSKSVQRAVSTCLPPLVVLS-KGL----SGE-------YVLELLLELLTSTKIAERAGAAYGLAGLVNGLGIE 168 (569)
T ss_pred HHHhcCCCcHHHHHHHHHHhhhHHHHh-hcc----CHH-------HHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHHh
Confidence 777777788899998888886552221 111 111 23333444445556667777777777777655432
Q ss_pred HHHhHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHhhcccchhhccchhhHHHHHHHHHHhhcCCCCCccccCCCCC
Q 001442 228 LRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETE 307 (1076)
Q Consensus 228 ~~~~l~~l~~~l~~~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~dd~~~~~~~~e 307 (1076)
-... ..++..+.....++. ...-|+.++-.......+ -+ ....||+-.++|.++.+..+.
T Consensus 169 ~~~~-~~~l~~l~~ai~dk~-~~~~re~~~~a~~~~~~~--Lg----~~~EPyiv~~lp~il~~~~d~------------ 228 (569)
T KOG1242|consen 169 SLKE-FGFLDNLSKAIIDKK-SALNREAALLAFEAAQGN--LG----PPFEPYIVPILPSILTNFGDK------------ 228 (569)
T ss_pred hhhh-hhHHHHHHHHhcccc-hhhcHHHHHHHHHHHHHh--cC----CCCCchHHhhHHHHHHHhhcc------------
Confidence 1111 235555555555442 222233222222222221 11 336789999999998876433
Q ss_pred CcccCCCCchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHh
Q 001442 308 DEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLN 387 (1076)
Q Consensus 308 ~~d~~e~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~ 387 (1076)
...++.++..+...+..++++ .-++.++|.+...+....|+.+.+++..+|.+++..++.+...+++++|.+..
T Consensus 229 -----~~~Vr~Aa~~a~kai~~~~~~-~aVK~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lse 302 (569)
T KOG1242|consen 229 -----INKVREAAVEAAKAIMRCLSA-YAVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSE 302 (569)
T ss_pred -----chhhhHHHHHHHHHHHHhcCc-chhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHH
Confidence 223678888888888887763 33444444444444444999999999999999999999999999999999999
Q ss_pred hCCCCChhHHHHHHHHHHHhhhhhch-hH----------------------------------HhhhhhhhHHHHHhhcc
Q 001442 388 SFRDPHPRVRWAAINAIGQLSTDLGP-DL----------------------------------QNQFHPQVLPALAGAMD 432 (1076)
Q Consensus 388 ~l~d~~~~vr~~a~~~l~~l~~~~~~-~~----------------------------------~~~~~~~ll~~l~~~l~ 432 (1076)
.|.|.+|.||.++..++-++++.... ++ ..+.+.-++|.|-+.+.
T Consensus 303 vl~DT~~evr~a~~~~l~~~~svidN~dI~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~ 382 (569)
T KOG1242|consen 303 VLWDTKPEVRKAGIETLLKFGSVIDNPDIQKIIPTLLDALADPSCYTPECLDSLGATTFVAEVDAPSLALMVPILKRGLA 382 (569)
T ss_pred HHccCCHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhcCcccchHHHHHhhcceeeeeeecchhHHHHHHHHHHHHh
Confidence 99999999999999999999876532 11 01112334444444444
Q ss_pred CCCChhHHHHHHHHHHHhhhcC-CcccccCchHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHhHhhHHhhHhhhHHHH
Q 001442 433 DFQNPRVQAHAASAVLNFSENC-TPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFL 511 (1076)
Q Consensus 433 ~~~~~~v~~~a~~aL~~l~~~~-~~~~l~~~l~~ll~~l~~~l~~~~~~v~~~al~ai~~l~~~~~~~~~~~~~~i~~~L 511 (1076)
+ .+...+..++..+.+++... ++..+.||++.++|.+-..+.++.+++|..+..++|.+.+..|.. +++...|.+
T Consensus 383 e-Rst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~---~f~d~~p~l 458 (569)
T KOG1242|consen 383 E-RSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGALLERLGEV---SFDDLIPEL 458 (569)
T ss_pred h-ccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHhh---cccccccHH
Confidence 4 34445677788888888777 456689999999999999999999999999999999999999875 457888888
Q ss_pred HHHHhccCCchhhhhHHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHhcCCCCCCChhhHHHHHHHHHHHHHhccCcc
Q 001442 512 KAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDFL 591 (1076)
Q Consensus 512 ~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~g~~~~~~~~~~ii~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 591 (1076)
.+....... ..-|..+.+.++.+....|-+.+..+.+.++..+.... .+..+++..+..+.-+-...+..|.
T Consensus 459 ~e~~~~~k~---~~~~~g~aq~l~evl~~~~v~~~~~~~~~~~a~~~~~~-----~~~~~~dg~~~~~~~lp~~~~~~~~ 530 (569)
T KOG1242|consen 459 SETLTSEKS---LVDRSGAAQDLSEVLAGLGVEKVEDILPEILANASSVL-----IDERIRDGVIWLFYLLPYIFGFQFQ 530 (569)
T ss_pred HHhhccchh---hhhhHHHhhhHHHHHhcccchHHHHHHHHHHHHHhhcc-----chhhhccCeeehhhccchhhhHHhH
Confidence 877643222 22244455566666666665555555555544443311 1122445555556666667788999
Q ss_pred cchhhhhHHHHHhcc
Q 001442 592 PYMSVVMPPLLQSAQ 606 (1076)
Q Consensus 592 ~~l~~i~~~ll~~~~ 606 (1076)
+|+..+++.+++.+.
T Consensus 531 ~yi~~i~~~~~k~~a 545 (569)
T KOG1242|consen 531 PYIHEILDEFLKGLA 545 (569)
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999998885
No 29
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=99.73 E-value=6.5e-14 Score=151.51 Aligned_cols=519 Identities=18% Similarity=0.187 Sum_probs=343.1
Q ss_pred hCCCHHHHHHHHHHHHHHHccCcHHHHHhHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHhhcccchhhccchhhHH
Q 001442 203 NNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFIN 282 (1076)
Q Consensus 203 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~ 282 (1076)
.++..+++....+........++.....++..+++..+.-. ..+.+|..-+-+-.+++.+ .+ ...+-+.
T Consensus 27 ~d~~~~v~~~ml~a~~~~~~~~~~~~v~~l~~~~~~~l~~~----~~~~~~~~~~v~~~~~a~~---~~----~~d~~~~ 95 (569)
T KOG1242|consen 27 EDRRIDVRGNMLEAGEAAINQHGDQNVLNLKPCFEQRLNSL----HNDNLRNNVVVLEGTLAFH---LQ----IVDPRPI 95 (569)
T ss_pred CCcchhhHHhHHHHHHHHHHhhhHHHHHHHHHHHHHHhccc----hhHHHhhhhHHHHHHHHHh---cc----ccCcchh
Confidence 56667788888888887777777766666666666554422 2677888877777777774 21 1112223
Q ss_pred HHHHHHHHhhcCCCCCccccCCCCCCcccCCCCchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhcCCChhHHHHHHHH
Q 001442 283 RLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIA 362 (1076)
Q Consensus 283 ~l~~~l~~~l~~~~dd~~~~~~~~e~~d~~e~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~ 362 (1076)
.++..++..+..+. .+.+.+...|+..+..... ..-...+.+.+.+.++......|..+...
T Consensus 96 ~~~~~~~~~~~tps-----------------~~~q~~~~~~l~~~~~~~~-~~~~~~~l~~l~~ll~~~~~~~~~~aa~~ 157 (569)
T KOG1242|consen 96 SIIEILLEELDTPS-----------------KSVQRAVSTCLPPLVVLSK-GLSGEYVLELLLELLTSTKIAERAGAAYG 157 (569)
T ss_pred HHHHHHHHhcCCCc-----------------HHHHHHHHHHhhhHHHHhh-ccCHHHHHHHHHHHhccccHHHHhhhhHH
Confidence 34444444332221 1234555666666654443 23345566777788888888899999999
Q ss_pred HHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChh-HHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCChhHHH
Q 001442 363 LAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPR-VRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQA 441 (1076)
Q Consensus 363 l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~-vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~v~~ 441 (1076)
+..+..+..-.-. .=..++..+.....|.+.. .|..+..+....+..+++.+ ++|...++|.++..+.| ..+.||.
T Consensus 158 ~ag~v~g~~i~~~-~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~-EPyiv~~lp~il~~~~d-~~~~Vr~ 234 (569)
T KOG1242|consen 158 LAGLVNGLGIESL-KEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPF-EPYIVPILPSILTNFGD-KINKVRE 234 (569)
T ss_pred HHHHHcCcHHhhh-hhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCC-CchHHhhHHHHHHHhhc-cchhhhH
Confidence 9988887653111 1124677777888887654 45578888888888998777 89999999999999999 8999999
Q ss_pred HHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHhHhhHHhhHhhhHHHHHHHHhccCCc
Q 001442 442 HAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDK 521 (1076)
Q Consensus 442 ~a~~aL~~l~~~~~~~~l~~~l~~ll~~l~~~l~~~~~~v~~~al~ai~~l~~~~~~~~~~~~~~i~~~L~~~l~~~~~~ 521 (1076)
+|..+...+...+....+. .+++.++..+....+..+..++..+|.++.+.+..+.-+++.++|.+.+.+.+
T Consensus 235 Aa~~a~kai~~~~~~~aVK----~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~D---- 306 (569)
T KOG1242|consen 235 AAVEAAKAIMRCLSAYAVK----LLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWD---- 306 (569)
T ss_pred HHHHHHHHHHHhcCcchhh----HhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHcc----
Confidence 9999999999887765544 44455554444458889999999999999999999999999999999999875
Q ss_pred hhhhhHHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHhcCCCCCCChhhHHHHHHHHHHHHHhccCcc-----cchhh
Q 001442 522 SNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDFL-----PYMSV 596 (1076)
Q Consensus 522 ~~~~lr~~a~~~l~~i~~~~g~~~~~~~~~~ii~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~l~~ 596 (1076)
....+|..+++|+..++..+....+.++.+.+++.+ .++. .+...|...+. ...|. |-+..
T Consensus 307 T~~evr~a~~~~l~~~~svidN~dI~~~ip~Lld~l---~dp~--------~~~~e~~~~L~---~ttFV~~V~~psLal 372 (569)
T KOG1242|consen 307 TKPEVRKAGIETLLKFGSVIDNPDIQKIIPTLLDAL---ADPS--------CYTPECLDSLG---ATTFVAEVDAPSLAL 372 (569)
T ss_pred CCHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHh---cCcc--------cchHHHHHhhc---ceeeeeeecchhHHH
Confidence 245689999999999998876544444444443332 2221 01112222221 12233 44566
Q ss_pred hhHHHHHhccCCCCccccCCCCCccccCCCCcccchhhcCCceeeecchhHHHHHHHHHHHHHHHHHh--hhcccccHHH
Q 001442 597 VMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATACNMLCCYADEL--KEGFFPWIDQ 674 (1076)
Q Consensus 597 i~~~ll~~~~~~~~~~~~~~d~d~~~~~~d~~~~~~~~~~~~~~~v~~~~~~~k~~A~~~l~~i~~~~--~~~~~p~l~~ 674 (1076)
++|.+-+.+... .. ..|..++..++.++.-. +..+.||+++
T Consensus 373 mvpiL~R~l~eR-----------------------------------st--~~kr~t~~IidNm~~LveDp~~lapfl~~ 415 (569)
T KOG1242|consen 373 MVPILKRGLAER-----------------------------------ST--SIKRKTAIIIDNMCKLVEDPKDLAPFLPS 415 (569)
T ss_pred HHHHHHHHHhhc-----------------------------------cc--hhhhhHHHHHHHHHHhhcCHHHHhhhHHH
Confidence 677666666311 11 11244566677777766 6679999999
Q ss_pred HHHHhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHH
Q 001442 675 VAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVEALHKEPDTEICASMLDSL 754 (1076)
Q Consensus 675 ~~~~l~~~l~~~~~~~vr~~a~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~l~~l 754 (1076)
+++.+-..+.+. -+++|..+..+|+.+++.... ..++...|.+.+....+....-+......+
T Consensus 416 Llp~lk~~~~d~-~PEvR~vaarAL~~l~e~~g~----------------~~f~d~~p~l~e~~~~~k~~~~~~g~aq~l 478 (569)
T KOG1242|consen 416 LLPGLKENLDDA-VPEVRAVAARALGALLERLGE----------------VSFDDLIPELSETLTSEKSLVDRSGAAQDL 478 (569)
T ss_pred HhhHHHHHhcCC-ChhHHHHHHHHHHHHHHHHHh----------------hcccccccHHHHhhccchhhhhhHHHhhhH
Confidence 999999988886 899999999999999886532 112445666666665543333334466677
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcCCCCChHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHhh
Q 001442 755 NECIQISGPLLDEGQVRSIVDEIKQVITASSSRKRERAERAKAEDFDAEESELIKEENEQEEEVFDQVGEILGTLIKTFK 834 (1076)
Q Consensus 755 ~~~i~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ed~d~~~~~~~~e~~e~~~~~~~~~~~~l~~l~~~~~ 834 (1076)
.+++...|. +.+..++..+....... . .++.++++...++..+-..+|
T Consensus 479 ~evl~~~~v----~~~~~~~~~~~a~~~~~--------------~--------------~~~~~~dg~~~~~~~lp~~~~ 526 (569)
T KOG1242|consen 479 SEVLAGLGV----EKVEDILPEILANASSV--------------L--------------IDERIRDGVIWLFYLLPYIFG 526 (569)
T ss_pred HHHHhcccc----hHHHHHHHHHHHHHhhc--------------c--------------chhhhccCeeehhhccchhhh
Confidence 777766553 33333333322111110 0 113455667777787888888
Q ss_pred hchhhhHHHHHHhHhhhhcCCCCHHHHH
Q 001442 835 AAFLPFFDELSSYLTPMWGKDKTAEERR 862 (1076)
Q Consensus 835 ~~~~~~~~~l~~~l~~~l~~~~~~~~r~ 862 (1076)
..+.+|+..+++.+.+.+. +.++..+.
T Consensus 527 ~~~~~yi~~i~~~~~k~~a-d~de~~~~ 553 (569)
T KOG1242|consen 527 FQFQPYIHEILDEFLKGLA-DNDEKGRD 553 (569)
T ss_pred HHhHHHHHHHHHHHHHHhh-hcCCcccc
Confidence 8999999999998888763 44443343
No 30
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.72 E-value=2.8e-09 Score=121.18 Aligned_cols=483 Identities=15% Similarity=0.190 Sum_probs=239.7
Q ss_pred HHHHHHcc--CCCHHHHHHHHHHHHHhcccCCCCcccCCCHhHHHHHHHHHHHHHhhcchh-hHHHHHHHHHHHHHhccc
Q 001442 60 KLAHLLQR--SPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLESAK-SISKKLCDTVSELASNIL 136 (1076)
Q Consensus 60 ~L~~il~~--~~~~~~R~~a~v~Lk~~i~~~~~~~w~~l~~~~~~~lk~~Ll~~l~~~~~~-~vr~~~~~~i~~ia~~~~ 136 (1076)
.+++++.. ..++..|..|-..|++.=+.. +....|++.+..+..+ .||+.++.-+.......|
T Consensus 5 ~l~~~~~~T~d~d~~~R~~AE~~L~q~~K~p--------------gFv~~lLqIi~~d~~~l~vrqaaaIYlKN~I~~~W 70 (1010)
T KOG1991|consen 5 SLLQIFRATIDSDAKERKAAEQQLNQLEKQP--------------GFVSSLLQIIMDDGVPLPVRQAAAIYLKNKITKSW 70 (1010)
T ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHhhcCC--------------cHHHHHHHHHHccCCchhHHHHHHHHHHHHHHhcC
Confidence 34444433 567999999999998664332 2445778888766544 578887777766665555
Q ss_pred CCCCcchhHHHHHHhhcCCCHHHHHHHHHHHHHH-------HHHHHHhhCCcchHhHHhhhHHHHHHHHHHHHhCCCHHH
Q 001442 137 PENGWPELLPFMFQCVSSDSVKLQESAFLIFAQL-------IINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEAT 209 (1076)
Q Consensus 137 ~~~~w~~ll~~l~~~~~~~~~~~r~~al~~L~~l-------~~~~~~~l~~~~~~~~~~~l~p~~l~~l~~~~~~~~~~~ 209 (1076)
+...-|. .|.- .-.++...+|+.-+.++... +..++..+= ...|..-+|.++..+...+++++...
T Consensus 71 ~~~~~~g-~~~~--I~e~dk~~irenIl~~iv~~p~~iRvql~~~l~~Ii----~~D~p~~Wp~l~d~i~~~Lqs~~~~~ 143 (1010)
T KOG1991|consen 71 SSHEAPG-RPFG--IPEEDKAVIRENILETIVQVPELIRVQLTACLNTII----KADYPEQWPGLLDKIKNLLQSQDANH 143 (1010)
T ss_pred CccCCCC-CcCC--CChHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHH----hcCCcccchhHHHHHHHHhcCcchhh
Confidence 5332222 0000 00011123333333332211 111121111 12223456777777778888888888
Q ss_pred HHHHHHHHHHHHccCc-----------HHHHHhHHHHHHHHHHHhcCCCc-chhHHHHHHHHHHHHHHhhcccchhhccc
Q 001442 210 AQEALELLIELAGTEP-----------RFLRRQLVDVVGSMLQIAEAESL-EEGTRHLAIEFVITLAEARERAPGMMRKL 277 (1076)
Q Consensus 210 ~~~~~~~l~~l~~~~~-----------~~~~~~l~~l~~~l~~~~~~~~~-~~~~r~~al~~l~~l~~~~~~~~~~~~~~ 277 (1076)
...++-|+..+++.+. ..+...++.+.+....++...+. .-++....+....+++-+ .-|.....
T Consensus 144 vy~aLl~l~qL~k~ye~k~~eeR~~l~~~v~~~fP~il~~~~~ll~~~s~~s~el~klIlKifks~~~~--~LP~~L~~- 220 (1010)
T KOG1991|consen 144 VYGALLCLYQLFKTYEWKKDEERQPLGEAVEELFPDILQIFNGLLSQESYQSVELQKLILKIFKSLIYY--ELPLELSA- 220 (1010)
T ss_pred HHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHH--hCCHHhhC-
Confidence 9999999999887653 22333444555544444433211 112233334433344332 12211111
Q ss_pred hhhHHHHHHHHHHhhcCCCCCccccCCCCCCcccCCCCchhh---HHHHHHHHHHHcCCCc----------------chH
Q 001442 278 PQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSV---GQECLDRLAIALGGNT----------------IVP 338 (1076)
Q Consensus 278 ~~~~~~l~~~l~~~l~~~~dd~~~~~~~~e~~d~~e~~~~~~---a~~~l~~l~~~~~~~~----------------~~~ 338 (1076)
+..+...+...+..+..+-...... . |.++--++.-|++ |...|.++.+.+|... +.+
T Consensus 221 ~~~f~~W~~l~l~i~~rpvP~E~l~-~--d~e~R~~~~wwK~KKWa~~~L~Rlf~Ryg~~~~~~~~y~~Fa~~f~~n~~~ 297 (1010)
T KOG1991|consen 221 PETFTSWMELFLSILNRPVPVEVLS-L--DPEDRSSWPWWKCKKWALHILNRLFERYGSPSLVVPEYKEFAQMFLKNFAQ 297 (1010)
T ss_pred chhHHHHHHHHHHHHcCCCChhccc-C--ChhhcccccchhhHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHH
Confidence 1223334444444443321100000 0 1111112222343 6677788887776421 111
Q ss_pred HHHH----HHHHhhcCCChhHHHHHHHHHHHHHhhcH-----HHHHHhHHHHHH-HHHhhC--CCCChhHHHHHHHHHHH
Q 001442 339 VASE----QLPAYLAAPEWQKHHAALIALAQIAEGCA-----KVMVKNLEQVLS-MVLNSF--RDPHPRVRWAAINAIGQ 406 (1076)
Q Consensus 339 ~l~~----~l~~~l~~~~~~~r~aal~~l~~l~~~~~-----~~~~~~l~~i~~-~l~~~l--~d~~~~vr~~a~~~l~~ 406 (1076)
.+++ .+.++-+ +-|..-+.-..++..+..+.. ..++||+..++. .|++.+ +|++...
T Consensus 298 ~ile~~lk~l~~~~~-~~yls~rvl~~~l~fl~~~Vs~~~twkll~PHl~~ii~~vIFPlmc~~d~deel---------- 366 (1010)
T KOG1991|consen 298 GILEVFLKILEQWRQ-QLYLSDRVLYYLLNFLEQCVSHASTWKLLKPHLQVIIQDVIFPLMCFNDEDEEL---------- 366 (1010)
T ss_pred HHHHHHHHHHHHHHh-cccCCHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHhhhhhcCCCcccHHH----------
Confidence 1111 1211112 333333333444444443332 345677766653 445544 3333211
Q ss_pred hhhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhh--------cCc
Q 001442 407 LSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQ--------NGK 478 (1076)
Q Consensus 407 l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~aL~~l~~~~~~~~l~~~l~~ll~~l~~~l~--------~~~ 478 (1076)
...+. .+|...-+ ....|--+|+ .+|...+..++..-+++.+ +.+++.+...+. ..+
T Consensus 367 ----we~DP-~EYiR~~~----Di~ed~~sp~--~Aa~~~l~~~~~KR~ke~l----~k~l~F~~~Il~~~~~~~~~~~~ 431 (1010)
T KOG1991|consen 367 ----WEEDP-YEYIRKKF----DIFEDGYSPD--TAALDFLTTLVSKRGKETL----PKILSFIVDILTRYKEASPPNKN 431 (1010)
T ss_pred ----HhcCH-HHHHHhcC----chhcccCCCc--HHHHHHHHHHHHhcchhhh----hhHHHHHHHHHHhhcccCCCccC
Confidence 00111 12222211 1222212233 4566677777666554444 445555555554 235
Q ss_pred hhHHHHHHHHHHHHHHHhHhhHHhhHh----hhHHHHHHHHhccCCchhhhhHHHHHHHHHHHHHHhchhhhh--hhHHH
Q 001442 479 QMVQEGALTALASVADSSQEHFQKYYD----AVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFR--DDAKQ 552 (1076)
Q Consensus 479 ~~v~~~al~ai~~l~~~~~~~~~~~~~----~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~g~~~~~--~~~~~ 552 (1076)
++-+..|+.++|++++...+. .||-+ -+.++++..+.. ..-.+|++|...++.++. ..|. ..+.+
T Consensus 432 ~rqkdGAL~~vgsl~~~L~K~-s~~~~~mE~flv~hVfP~f~s----~~g~Lrarac~vl~~~~~----~df~d~~~l~~ 502 (1010)
T KOG1991|consen 432 PRQKDGALRMVGSLASILLKK-SPYKSQMEYFLVNHVFPEFQS----PYGYLRARACWVLSQFSS----IDFKDPNNLSE 502 (1010)
T ss_pred hhhhhhHHHHHHHHHHHHccC-CchHHHHHHHHHHHhhHhhcC----chhHHHHHHHHHHHHHHh----ccCCChHHHHH
Confidence 678889999999999766542 22222 234444444432 345689999998888873 2232 23556
Q ss_pred HHHHHHHHhcCCCCCCChhhHHHHHHHHHHHHHhc---cCcccchhhhhHHHHHhcc
Q 001442 553 VMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLG---QDFLPYMSVVMPPLLQSAQ 606 (1076)
Q Consensus 553 ii~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~l~~i~~~ll~~~~ 606 (1076)
.++...+...+ +.+-|++-.+.-++..+..... +.+.+++|.+|+.+++..+
T Consensus 503 ale~t~~~l~~--d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~n 557 (1010)
T KOG1991|consen 503 ALELTHNCLLN--DNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSN 557 (1010)
T ss_pred HHHHHHHHhcc--CCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHH
Confidence 66666663221 1344666655556666666555 3489999999999998874
No 31
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.63 E-value=3.1e-12 Score=135.08 Aligned_cols=516 Identities=16% Similarity=0.148 Sum_probs=327.6
Q ss_pred chhhHHHHHHHHHHHcCCC---cchHHHHH-HHHHhhcCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCC
Q 001442 316 NYSVGQECLDRLAIALGGN---TIVPVASE-QLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRD 391 (1076)
Q Consensus 316 ~~~~a~~~l~~l~~~~~~~---~~~~~l~~-~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d 391 (1076)
-+++|+.-+..+.+.+-.+ .-+..++. ...+...+.+-+.|++++.+++.++-+.+....+|+..+++.++.++.|
T Consensus 16 kRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~Y~~~iv~Pv~~cf~D 95 (675)
T KOG0212|consen 16 KRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAGYLEKIVPPVLNCFSD 95 (675)
T ss_pred HHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccccHHHHHHhhHHHHHhccC
Confidence 3566776777776654211 22333333 4456677888888889999999998887755556999999999999999
Q ss_pred CChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccc-cCchHHHHHHH
Q 001442 392 PHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEIL-TPYLDGIVSKL 470 (1076)
Q Consensus 392 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~aL~~l~~~~~~~~l-~~~l~~ll~~l 470 (1076)
++.+||.-||..+-.+++....++ -.|++.+...+.+...| ++..|+.+| ..+.++++..-.+.- .-.++.++|.|
T Consensus 96 ~d~~vRyyACEsLYNiaKv~k~~v-~~~Fn~iFdvL~klsaD-sd~~V~~~a-eLLdRLikdIVte~~~tFsL~~~ipLL 172 (675)
T KOG0212|consen 96 QDSQVRYYACESLYNIAKVAKGEV-LVYFNEIFDVLCKLSAD-SDQNVRGGA-ELLDRLIKDIVTESASTFSLPEFIPLL 172 (675)
T ss_pred ccceeeeHhHHHHHHHHHHhccCc-ccchHHHHHHHHHHhcC-CccccccHH-HHHHHHHHHhccccccccCHHHHHHHH
Confidence 999999999999999999888877 58999999999999999 888886654 667777765432211 34688899999
Q ss_pred HHHhhcCchhHHHHHHHHHHHHHHHhHhhHHhhHhhhHHHHHHHHhccCCchhhhhHHHHHHHHHHHHHHhchhhhhhhH
Q 001442 471 LVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDA 550 (1076)
Q Consensus 471 ~~~l~~~~~~v~~~al~ai~~l~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~g~~~~~~~~ 550 (1076)
-.-+...++..|...++.|..+-...+-+|..|++.+++.|+..+.+. ++ .+|..+=-+++.+...
T Consensus 173 ~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~-s~---eVr~~~~t~l~~fL~e---------- 238 (675)
T KOG0212|consen 173 RERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDS-SD---EVRTLTDTLLSEFLAE---------- 238 (675)
T ss_pred HHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCC-cH---HHHHHHHHHHHHHHHH----------
Confidence 888888899999999999999988888899999999999999998752 22 2332211122222111
Q ss_pred HHHHHHHHHHhcCCCCCCChhhHHHHHHHHHHHHHhccCcccchhhhhHHHHHhccCCCCccccCCCCCccccCCCCccc
Q 001442 551 KQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSM 630 (1076)
Q Consensus 551 ~~ii~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~i~~~ll~~~~~~~~~~~~~~d~d~~~~~~d~~~~ 630 (1076)
+.++. . .+ ++ +.+++.+..-+
T Consensus 239 ---------I~s~P---~-s~-----------------d~----~~~i~vlv~~l------------------------- 259 (675)
T KOG0212|consen 239 ---------IRSSP---S-SM-----------------DY----DDMINVLVPHL------------------------- 259 (675)
T ss_pred ---------HhcCc---c-cc-----------------Cc----ccchhhccccc-------------------------
Confidence 11110 0 00 00 11111111001
Q ss_pred chhhcCCceeeecchhHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHhhhcccccCCHHHHHHHHHHHHHHHHHHHHHH
Q 001442 631 ETITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAI 710 (1076)
Q Consensus 631 ~~~~~~~~~~~v~~~~~~~k~~A~~~l~~i~~~~~~~~~p~l~~~~~~l~~~l~~~~~~~vr~~a~~~l~~L~~~~~~~~ 710 (1076)
..+.-+-+..|+..+.+|..-.|..+.||+..++..+++++.+...-.++..+...=+.+..
T Consensus 260 ------------~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~------ 321 (675)
T KOG0212|consen 260 ------------QSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLK------ 321 (675)
T ss_pred ------------cCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHH------
Confidence 11112335678999999999999999999999999999999874222344433332111111
Q ss_pred HhCCCCCCCHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHhHHH
Q 001442 711 EKGLAPGRNESYVKQLSDFIIPALVEALHKEPDTEICASMLDSLNECIQISGPLLDEGQVRSIVDEIKQVITASSSRKRE 790 (1076)
Q Consensus 711 ~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~l~~l~~~i~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 790 (1076)
...++.. +..+ .+.++++.+.+.+...
T Consensus 322 --------------------------l~s~~~~------------------~~~i---d~~~ii~vl~~~l~~~------ 348 (675)
T KOG0212|consen 322 --------------------------LVSSERL------------------KEEI---DYGSIIEVLTKYLSDD------ 348 (675)
T ss_pred --------------------------HHhhhhh------------------cccc---chHHHHHHHHHHhhcc------
Confidence 1111000 0000 0112333332222221
Q ss_pred HHHhhcCCCCChHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHhHhhhhcCCCCHHHHHHHHHHHHH
Q 001442 791 RAERAKAEDFDAEESELIKEENEQEEEVFDQVGEILGTLIKTFKAAFLPFFDELSSYLTPMWGKDKTAEERRIAICIFDD 870 (1076)
Q Consensus 791 ~~~~~~~ed~d~~~~~~~~e~~e~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~r~~al~~l~~ 870 (1076)
....+-.+.+.+..+...+|.....|...+.+.+++.+ .++++++-.-++.+++.
T Consensus 349 ------------------------~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tL-sd~sd~vvl~~L~lla~ 403 (675)
T KOG0212|consen 349 ------------------------REETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTL-SDRSDEVVLLALSLLAS 403 (675)
T ss_pred ------------------------hHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhh-cCchhHHHHHHHHHHHH
Confidence 12345577888888889999999888899999999988 67788888888999998
Q ss_pred HHHHhhhhhHhhHHhHHHHHHhhccCCChhHHhhhhHHHHHHHhhcCCCchHHHHHHHHHHHHhhcCCCCCChhhhhHHH
Q 001442 871 VAEQCREAALKYYETYLPFLLEACNDENQDVRQAAVYGLGVCAEFGGSVVKPLVGEALSRLNVVIRHPNALQPENLMAYD 950 (1076)
Q Consensus 871 l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~vr~~a~~~lg~l~~~~~~~~~~~~~~il~~L~~~l~~~~~~~~~~~~~~~ 950 (1076)
++..... +.+-+++..+++.+..+...++..+.+-+.++|..... ..+...+..++.++ ++.....
T Consensus 404 i~~s~~~---~~~~~fl~sLL~~f~e~~~~l~~Rg~lIIRqlC~lL~a------E~IYr~~a~ILe~e-----~nl~FAs 469 (675)
T KOG0212|consen 404 ICSSSNS---PNLRKFLLSLLEMFKEDTKLLEVRGNLIIRQLCLLLNA------ERIYRSIADILERE-----ENLKFAS 469 (675)
T ss_pred HhcCccc---ccHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHhCH------HHHHHHHHHHHhcc-----ccchHHH
Confidence 8877443 23455566666666656666666677788888876542 23344445555443 2344555
Q ss_pred HHHHHHHHHHhhcCCCCCHhhHHHHHHhhCCCCCcHHHHHHHHHHHHHHHhhcCCcccC-----cCcCchhhHHHHHHHH
Q 001442 951 NAVSALGKICQFHRDSIDAAQVVPAWLNCLPIKGDLIEAKIVHEQLCSMVERSDSDLLG-----PNHQYLPKIVSVFAEI 1025 (1076)
Q Consensus 951 na~~al~~i~~~~~~~~~~~~~l~~~l~~lp~~~d~~e~~~~~~~l~~li~~~~~~~~~-----~~~~~l~~i~~~~~~~ 1025 (1076)
..+.++-.++.+.++-. .+..-|..+ ..+|..+.|.+|.+-+.++|-.+++ .+++|...+++.|+++
T Consensus 470 tMV~~Ln~iLlTStELf----~LR~~Lk~l----sn~es~~lF~cLy~sWchnPva~~SLClLtQnYqhA~~liq~fa~~ 541 (675)
T KOG0212|consen 470 TMVQALNTILLTSTELF----QLRNKLKDL----SNEESQNLFCCLYRSWCHNPVATLSLCLLTQNYQHAYDLIQLFADV 541 (675)
T ss_pred HHHHHHHhhhcccHHHH----HHHHHHHhc----cChhhhHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 55666666665554422 122223333 2355666777777666444333322 2455666666666543
No 32
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.54 E-value=2.2e-11 Score=128.73 Aligned_cols=409 Identities=16% Similarity=0.172 Sum_probs=286.2
Q ss_pred hhcCCCHHHHHHHHHHHHHHHHHHHHhhCCcchHhHHhhhHHHHHH-HHHHHHhCCCHHHHHHHHHHHHHHHccCcHHHH
Q 001442 151 CVSSDSVKLQESAFLIFAQLIINFIQCLTSSADRDRFQDLLPLMMR-TLTESLNNGNEATAQEALELLIELAGTEPRFLR 229 (1076)
Q Consensus 151 ~~~~~~~~~r~~al~~L~~l~~~~~~~l~~~~~~~~~~~l~p~~l~-~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 229 (1076)
.+.+.-..-|++|..-+..++..+++.- +....+ .+++ .......+++...++.++..+...+-.-+..-.
T Consensus 8 ~ltdKlYekRKaaalelEk~Vk~l~~~~----~~~~i~----k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~ 79 (675)
T KOG0212|consen 8 GLTDKLYEKRKAAALELEKLVKDLVNNN----DYDQIR----KVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDA 79 (675)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHccC----cHHHHH----HHHHHHHHHhccCcccccccchHHHHHHHHHHhccccH
Confidence 3444445667777777766655443221 122223 3344 233444566666666666666554433333334
Q ss_pred HhHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHhhcccchhhccchhhHHHHHHHHHHhhcCCCCCccccCCCCCCc
Q 001442 230 RQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDE 309 (1076)
Q Consensus 230 ~~l~~l~~~l~~~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~dd~~~~~~~~e~~ 309 (1076)
+|+..+++..+.+..+ .+..+|..|+|.+..+++..+ .....|.+.++.++++...+.+.
T Consensus 80 ~Y~~~iv~Pv~~cf~D--~d~~vRyyACEsLYNiaKv~k------~~v~~~Fn~iFdvL~klsaDsd~------------ 139 (675)
T KOG0212|consen 80 GYLEKIVPPVLNCFSD--QDSQVRYYACESLYNIAKVAK------GEVLVYFNEIFDVLCKLSADSDQ------------ 139 (675)
T ss_pred HHHHHhhHHHHHhccC--ccceeeeHhHHHHHHHHHHhc------cCcccchHHHHHHHHHHhcCCcc------------
Confidence 5889999999998864 478899999999999998421 23446778899998887654321
Q ss_pred ccCCCCchhhHHHHHHHHHHHcCCC----cchHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHH
Q 001442 310 DAGESSNYSVGQECLDRLAIALGGN----TIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMV 385 (1076)
Q Consensus 310 d~~e~~~~~~a~~~l~~l~~~~~~~----~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l 385 (1076)
..+-+++.++++.+....+ --++.++|.+.+.+...++..|..-+.++..+-...+-.+-.|++.+++.+
T Consensus 140 ------~V~~~aeLLdRLikdIVte~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGL 213 (675)
T KOG0212|consen 140 ------NVRGGAELLDRLIKDIVTESASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGL 213 (675)
T ss_pred ------ccccHHHHHHHHHHHhccccccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHH
Confidence 2344778888888765322 236789999999999889999999998888876665556778999999999
Q ss_pred HhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHH
Q 001442 386 LNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDG 465 (1076)
Q Consensus 386 ~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~aL~~l~~~~~~~~l~~~l~~ 465 (1076)
++.|.|+++.||..+-.+++.+...+......-...+.++.+...++. +++.+|..|...+..|+...+.. +.+|++.
T Consensus 214 f~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s~d~~~~i~vlv~~l~s-s~~~iq~~al~Wi~efV~i~g~~-~l~~~s~ 291 (675)
T KOG0212|consen 214 FNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSSMDYDDMINVLVPHLQS-SEPEIQLKALTWIQEFVKIPGRD-LLLYLSG 291 (675)
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHHHhcCccccCcccchhhccccccC-CcHHHHHHHHHHHHHHhcCCCcc-hhhhhhh
Confidence 999999999999999999999987765433121467889999999999 99999999999999999888765 6799999
Q ss_pred HHHHHHHHhhcCch-hHHHHHHHHHHHHHHHhHhhHHh---hHhhhHHHHHHHHhccCCchhhhhHHHHHHHHHHHHHHh
Q 001442 466 IVSKLLVLLQNGKQ-MVQEGALTALASVADSSQEHFQK---YYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAV 541 (1076)
Q Consensus 466 ll~~l~~~l~~~~~-~v~~~al~ai~~l~~~~~~~~~~---~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~ 541 (1076)
++..+++++.+... .+++.+...-+.+...++..... -+..++..+...+.. +....|..+++.+..+-...
T Consensus 292 il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~----~~~~tri~~L~Wi~~l~~~~ 367 (675)
T KOG0212|consen 292 ILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSD----DREETRIAVLNWIILLYHKA 367 (675)
T ss_pred hhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhc----chHHHHHHHHHHHHHHHhhC
Confidence 99999999988776 46666666555555555443221 345778888777654 34456888888888888877
Q ss_pred chhhhhhhHHHHHHHHHHHhcCCCCCCChhhHHHHHHHHHHHHHhccCcccchhhhhHHHHHhcc
Q 001442 542 GKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQ 606 (1076)
Q Consensus 542 g~~~~~~~~~~ii~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~i~~~ll~~~~ 606 (1076)
+. .+..+...+...+++...+ .+|.+....+..++.+|. ..-.+.+-+.+..+++.+.
T Consensus 368 p~-ql~~h~~~if~tLL~tLsd---~sd~vvl~~L~lla~i~~---s~~~~~~~~fl~sLL~~f~ 425 (675)
T KOG0212|consen 368 PG-QLLVHNDSIFLTLLKTLSD---RSDEVVLLALSLLASICS---SSNSPNLRKFLLSLLEMFK 425 (675)
T ss_pred cc-hhhhhccHHHHHHHHhhcC---chhHHHHHHHHHHHHHhc---CcccccHHHHHHHHHHHHh
Confidence 74 5667778888887774432 344555555555555554 3334455555666666664
No 33
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.54 E-value=8.4e-08 Score=111.68 Aligned_cols=388 Identities=13% Similarity=0.131 Sum_probs=225.2
Q ss_pred hhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCC--------cccccCchHHHHHHHHHHhhcCchhHHHHHHHHH
Q 001442 418 QFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCT--------PEILTPYLDGIVSKLLVLLQNGKQMVQEGALTAL 489 (1076)
Q Consensus 418 ~~~~~ll~~l~~~l~~~~~~~v~~~a~~aL~~l~~~~~--------~~~l~~~l~~ll~~l~~~l~~~~~~v~~~al~ai 489 (1076)
.-+..+.|.+...+.. .+..|...|.+|..+++... .+.+..|-.+.||.+++.-......-+ .++.+.
T Consensus 514 ~sF~~la~~l~~al~~--~~elr~~Ic~sL~~Lv~~n~~~~~a~e~~e~~s~~AknfL~~lfn~ytq~~~~~~-~~l~~~ 590 (1176)
T KOG1248|consen 514 ESFTDLAPILGAALLK--RPELRETICNSLRMLVEQNKPSSDAAENKEVLSNDAKNFLPRLFNVYTQTVAAGR-KILASR 590 (1176)
T ss_pred HHHHHHHHHHHHHHhc--chHhHHHHHHHHHHHHHcCCCcchHHHHHHHHhhhhhHHHHHHHHHhcCCCcccc-ccHHHH
Confidence 4477888888888876 46899999999999998752 134567888899999998776554443 334444
Q ss_pred HHHHHHhH-hhHHhhHhhhHHHHHHHHhccCC-ch---hhhhHHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHhcCC
Q 001442 490 ASVADSSQ-EHFQKYYDAVMPFLKAILVNATD-KS---NRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQ 564 (1076)
Q Consensus 490 ~~l~~~~~-~~~~~~~~~i~~~L~~~l~~~~~-~~---~~~lr~~a~~~l~~i~~~~g~~~~~~~~~~ii~~l~~~~~~~ 564 (1076)
........ ..|..-...+...|.+.+....+ .+ ....+...++-+..++.....+....+. .+++.. .+.
T Consensus 591 ~~~L~~i~~~~~~~t~~dv~~~l~~s~~e~as~~~~s~~~~~~~slLdl~~~~a~~~~e~~vs~l~-~v~~~~----e~~ 665 (1176)
T KOG1248|consen 591 STVLEIIRVDYFTVTPTDVVGSLKDSAGELASDLDESVASFKTLSLLDLLIALAPVQTESQVSKLF-TVDPEF----ENS 665 (1176)
T ss_pred HHHHHHHHHHHhhcccHHHHHHHHHHHHhHhccchhhhhhHHHHHHHHHHHhhhccccchhHHHHH-HhhHHh----hcc
Confidence 33333332 22221122223333322222111 11 1111222333333333322211122221 122211 111
Q ss_pred CCCCChhhHHHHHHHHHHHHHhccCcccch----hhhhHHHHHhccCCCCccccCCCCCccccCCCCcccchhhcCCcee
Q 001442 565 METDDPTTSYMLQAWARLCKCLGQDFLPYM----SVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRI 640 (1076)
Q Consensus 565 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l----~~i~~~ll~~~~~~~~~~~~~~d~d~~~~~~d~~~~~~~~~~~~~~ 640 (1076)
+...+..-.+..+..++.. ....-+. ..+...++..++.
T Consensus 666 --~~~~vQkK~yrlL~~l~~~--~s~~~~~~q~i~~I~n~L~ds~qs--------------------------------- 708 (1176)
T KOG1248|consen 666 --SSTKVQKKAYRLLEELSSS--PSGEGLVEQRIDDIFNSLLDSFQS--------------------------------- 708 (1176)
T ss_pred --ccHHHHHHHHHHHHHHhcC--CchhhHHHHHHHHHHHHHHHHHhc---------------------------------
Confidence 1112333344445555443 2222233 3333333333321
Q ss_pred eecchhHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCH
Q 001442 641 GIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNE 720 (1076)
Q Consensus 641 ~v~~~~~~~k~~A~~~l~~i~~~~~~~~~p~l~~~~~~l~~~l~~~~~~~vr~~a~~~l~~L~~~~~~~~~~~~~~~~~~ 720 (1076)
..-..+..++.+|..+.+.++..+..++++.++.++-++.+ .+..-|+.|..+|..+.... . +. ..|.++
T Consensus 709 ----~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~Ke-~n~~aR~~Af~lL~~i~~i~-~-~~---d~g~e~ 778 (1176)
T KOG1248|consen 709 ----SSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVILSLKE-VNVKARRNAFALLVFIGAIQ-S-SL---DDGNEP 778 (1176)
T ss_pred ----cchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhccc-ccHHHHhhHHHHHHHHHHHH-h-hh---cccccc
Confidence 11123567899999999998877777778877776666654 58899999999988887411 1 11 113332
Q ss_pred HHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcCCCC
Q 001442 721 SYVKQLSDFIIPALVEALHKEPDTEICASMLDSLNECIQISGPLLDEGQVRSIVDEIKQVITASSSRKRERAERAKAEDF 800 (1076)
Q Consensus 721 ~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~l~~l~~~i~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ed~ 800 (1076)
....++..++.+...+..+ ...++...+-++..++...+..++.+.+..+++.+.-.|...
T Consensus 779 --~~~~lnefl~~Isagl~gd-~~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~---------------- 839 (1176)
T KOG1248|consen 779 --ASAILNEFLSIISAGLVGD-STRVVASDIVAITHILQEFKNILDDETLEKLISMVCLYLASN---------------- 839 (1176)
T ss_pred --hHHHHHHHHHHHHhhhccc-HHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcC----------------
Confidence 2334455555555555444 333444448899999998888788887777777766555432
Q ss_pred ChHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhch-hhhHHHHHHhHhhhhcCCCCHHHHHHHHHHHHHHHHHhhhh-
Q 001442 801 DAEESELIKEENEQEEEVFDQVGEILGTLIKTFKAAF-LPFFDELSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREA- 878 (1076)
Q Consensus 801 d~~~~~~~~e~~e~~~~~~~~~~~~l~~l~~~~~~~~-~~~~~~l~~~l~~~l~~~~~~~~r~~al~~l~~l~~~~~~~- 878 (1076)
...++.++...+..+++.++... .+|.+.++|.++.++ ++.....|.-.-.++.-+++.+|..
T Consensus 840 --------------sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls-~d~k~~~r~Kvr~LlekLirkfg~~e 904 (1176)
T KOG1248|consen 840 --------------SREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALS-HDHKIKVRKKVRLLLEKLIRKFGAEE 904 (1176)
T ss_pred --------------CHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHHHHhCHHH
Confidence 14577889999999999999764 689999999999977 5667777887888899999988864
Q ss_pred hHhhHHhHHHHHHhhc
Q 001442 879 ALKYYETYLPFLLEAC 894 (1076)
Q Consensus 879 ~~~~~~~ll~~l~~~l 894 (1076)
+.+|++...--++..+
T Consensus 905 Le~~~pee~~klL~nI 920 (1176)
T KOG1248|consen 905 LESFLPEEDMKLLTNI 920 (1176)
T ss_pred HHhhCHHHHHHHHHHH
Confidence 4445554444444443
No 34
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.49 E-value=7.3e-07 Score=104.13 Aligned_cols=782 Identities=14% Similarity=0.108 Sum_probs=380.1
Q ss_pred HHHHHHHHHHHh--CCCHHHHHHHHHHHHHHHccCcHHHHHhH--HHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHhh
Q 001442 192 PLMMRTLTESLN--NGNEATAQEALELLIELAGTEPRFLRRQL--VDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEAR 267 (1076)
Q Consensus 192 p~~l~~l~~~~~--~~~~~~~~~~~~~l~~l~~~~~~~~~~~l--~~l~~~l~~~~~~~~~~~~~r~~al~~l~~l~~~~ 267 (1076)
+.+++.+..+++ +.+..+...++.||..+.......-+.+- ...+..++.... +..+.+|..|...+..+...+
T Consensus 92 s~~~~~l~~~~~~~stn~svlr~~iscL~~lLraQd~~aW~~~~t~~~~~~il~~~~--h~~pkvRk~a~~~i~~VL~~p 169 (1176)
T KOG1248|consen 92 SDTLNILAPFLTAESTNGSVLRLAISCLEDLLRAQDASAWSYSSTKTELFGILAFAA--HKKPKVRKAAQRGIAAVLKGP 169 (1176)
T ss_pred HHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHcchhhhccccHHHHHHHHHHHHh--cCchHHHHHHHHHHHHHHcCC
Confidence 334444444443 67888999999999988765432222221 122222333332 235889999999999998843
Q ss_pred cccchhhccchhhHHHHHHHHHHhhcCCCCCccccCCCCCCcccCCCCchhhHHHHHHHHHHHcCCCcchHHHHHHHHHh
Q 001442 268 ERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAY 347 (1076)
Q Consensus 268 ~~~~~~~~~~~~~~~~l~~~l~~~l~~~~dd~~~~~~~~e~~d~~e~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~ 347 (1076)
..+|. .--|-...+...++..+...-- + + +..+..+ ...+|..+....| ...+..+-..+...
T Consensus 170 ~~~~~---~~HpA~~~vak~cl~~~e~~~~-~--------a---~~t~v~~-~L~Ll~~~~~~~p-~~li~sl~e~lL~i 232 (1176)
T KOG1248|consen 170 PFAPD---AEHPASLSVAKFCLALIESKLG-S--------A---ENTTVLR-SLMLLRDVLSTFP-RPLIKSLCEVLLNI 232 (1176)
T ss_pred CCCcc---ccchHHHHHHHHHHHHHHhhhc-h--------H---HHHHHHH-HHHHHHHhhccCC-HHHHHHHHHHHHhh
Confidence 22221 1111112222223332211000 0 0 0000111 1223333333343 34455555555555
Q ss_pred hcCCChhHHHHHHHHHHHHHhhcHHHHHH-hHHHHHHHHHhh---CCCCChhHHHHHHH--HHHHhhhhhchhHHhhhhh
Q 001442 348 LAAPEWQKHHAALIALAQIAEGCAKVMVK-NLEQVLSMVLNS---FRDPHPRVRWAAIN--AIGQLSTDLGPDLQNQFHP 421 (1076)
Q Consensus 348 l~~~~~~~r~aal~~l~~l~~~~~~~~~~-~l~~i~~~l~~~---l~d~~~~vr~~a~~--~l~~l~~~~~~~~~~~~~~ 421 (1076)
....+-.++..++.++..+....+..+.. ....++..+... ..|.-..+-+.... +...++. ..++..-...+
T Consensus 233 ~~~s~v~v~~~~~q~l~~lf~~~~~~l~a~~~a~lL~al~~l~ps~~D~~~t~~W~~v~~~~~~~la~-~q~~~~~~~~~ 311 (1176)
T KOG1248|consen 233 TTESPVLVLLEVLQCLHSLFKKHPTALAAELNARLLTALMTLSPSENDDLLTVAWLKVLNEAHDILAT-LQEEKALQALP 311 (1176)
T ss_pred cccchHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHHHHHH-hCHHHHHHhhh
Confidence 56677888888998888887665542221 122344444433 23332222222111 1111111 12222234567
Q ss_pred hhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHH-HHHHhhcCchhHHHHHHHHHHHHHHHhHhhH
Q 001442 422 QVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSK-LLVLLQNGKQMVQEGALTALASVADSSQEHF 500 (1076)
Q Consensus 422 ~ll~~l~~~l~~~~~~~v~~~a~~aL~~l~~~~~~~~l~~~l~~ll~~-l~~~l~~~~~~v~~~al~ai~~l~~~~~~~~ 500 (1076)
.+++.++..+.. ..+.+...+..++..+...+.. +.+.+-.. +..+++-.-..+-..++..+..+.+.+|+..
T Consensus 312 ~~~~~~~t~~~s-~~~e~~q~a~q~l~~il~~sv~-----~~~~~c~~~~~~~l~~kf~~~~~~ilqi~s~~fek~G~~s 385 (1176)
T KOG1248|consen 312 RLFSLFFTILES-LIEELVQAASQSLKEILKESVT-----VIDALCSKQLHSLLDYKFHAVWRFILQILSALFEKCGELS 385 (1176)
T ss_pred hhhhHHHHHHhc-ccHHHHHHHHHHHHHHhcccCc-----ccHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHhhhhc
Confidence 788888886666 7778888888888888776542 44444444 5555555556677889999999999999988
Q ss_pred HhhHhhhHHHHHHHHhccCCchhhhhHHHHHHHHHHHHHHhchhhhhhhH-------------HHHHHHHHHHhcCCCCC
Q 001442 501 QKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDA-------------KQVMEVLMSLQGSQMET 567 (1076)
Q Consensus 501 ~~~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~g~~~~~~~~-------------~~ii~~l~~~~~~~~~~ 567 (1076)
.||+-..+..|... ....+ ..-+...=+|+|.-..++|++.+...+ .++++++.......
T Consensus 386 ~~~l~~~L~~l~~l-r~~~d---~~~~~~ld~~IGSAV~AmGPe~vL~~lpLnl~~~s~~~~RsWLLPvLR~~i~~A--- 458 (1176)
T KOG1248|consen 386 GPELTKTLEGLCDL-RASPD---FFHKLQLDQCIGSAVRAMGPERVLTILPLNLHAESLSFTRSWLLPVLRDYIIGA--- 458 (1176)
T ss_pred CHHHHHHHHHHHHh-hcCCC---CccHHHHHHHHHHHHHhhCHHHHHHHcchhccccccccchhHhHHHHHHhhccC---
Confidence 88888877777653 21111 112235567999999999987654322 23344433321110
Q ss_pred CChhhHHHHHHHHHHHHHhcc--------Cccc-chhhhhHHHHHhccCCCCccccCCCCCccccCCCCcccchhhcCCc
Q 001442 568 DDPTTSYMLQAWARLCKCLGQ--------DFLP-YMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDK 638 (1076)
Q Consensus 568 ~~~~~~~~~~~~~~l~~~~~~--------~~~~-~l~~i~~~ll~~~~~~~~~~~~~~d~d~~~~~~d~~~~~~~~~~~~ 638 (1076)
-..+...-|--++..+.. ...+ .+..+.-.+...+ |++....-|- .+.+.+.. .-.
T Consensus 459 ---~La~F~~~ivpla~sl~~K~~~l~~~~~~~~~~~tl~~QLW~LL---P~FC~~P~Dl--------~~sF~~la-~~l 523 (1176)
T KOG1248|consen 459 ---SLAFFTEYIVPLAMSLQLKAKKLKEAGSQVSLYDTLVDQLWSLL---PGFCNYPVDL--------AESFTDLA-PIL 523 (1176)
T ss_pred ---cHHHHHHHHHHHHHHHHHHHHhhhhccCcHHHHHHHHHHHHHhC---hhhhCCCccH--------HHHHHHHH-HHH
Confidence 011111122223332221 1111 2333333333333 3222111000 00000000 000
Q ss_pred eeeecchhHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHhhhccccc--CCHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 001442 639 RIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFY--FHEEVRKAAVSAMPELLRSAKLAIEKGLAP 716 (1076)
Q Consensus 639 ~~~v~~~~~~~k~~A~~~l~~i~~~~~~~~~p~l~~~~~~l~~~l~~~--~~~~vr~~a~~~l~~L~~~~~~~~~~~~~~ 716 (1076)
.-.+.... +-+..-|..|..++..... .++. ..+-+-..|-..|+.+.+.+.... ..
T Consensus 524 ~~al~~~~-elr~~Ic~sL~~Lv~~n~~----------------~~~a~e~~e~~s~~AknfL~~lfn~ytq~~----~~ 582 (1176)
T KOG1248|consen 524 GAALLKRP-ELRETICNSLRMLVEQNKP----------------SSDAAENKEVLSNDAKNFLPRLFNVYTQTV----AA 582 (1176)
T ss_pred HHHHhcch-HhHHHHHHHHHHHHHcCCC----------------cchHHHHHHHHhhhhhHHHHHHHHHhcCCC----cc
Confidence 00000000 1111222222222221100 0000 011222334444444443321100 01
Q ss_pred CCCHHHHHHHHHHHHHHHH-HHHccCCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHhh
Q 001442 717 GRNESYVKQLSDFIIPALV-EALHKEPDTEICASMLDSLNECIQISGPLLDEGQVRSIVDEIKQVITASSSRKRERAERA 795 (1076)
Q Consensus 717 ~~~~~~~~~~~~~i~~~l~-~~l~~~~~~~~~~~~l~~l~~~i~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 795 (1076)
+. +........+.... ..+ .....++......++.+...... ........-.++.++..........+...
T Consensus 583 ~~---~~l~~~~~~L~~i~~~~~-~~t~~dv~~~l~~s~~e~as~~~----~s~~~~~~~slLdl~~~~a~~~~e~~vs~ 654 (1176)
T KOG1248|consen 583 GR---KILASRSTVLEIIRVDYF-TVTPTDVVGSLKDSAGELASDLD----ESVASFKTLSLLDLLIALAPVQTESQVSK 654 (1176)
T ss_pred cc---ccHHHHHHHHHHHHHHHh-hcccHHHHHHHHHHHHhHhccch----hhhhhHHHHHHHHHHHhhhccccchhHHH
Confidence 10 01111111111111 111 12233333333333333322110 00001111111111111110000000000
Q ss_pred cCCCCChHhhhhhhhhhhhHHHHHHHHHHHHHHHHHH-hhhch-hhhHHHHHHhHhhhhcCCCCHHHHHHHHHHHHHHHH
Q 001442 796 KAEDFDAEESELIKEENEQEEEVFDQVGEILGTLIKT-FKAAF-LPFFDELSSYLTPMWGKDKTAEERRIAICIFDDVAE 873 (1076)
Q Consensus 796 ~~ed~d~~~~~~~~e~~e~~~~~~~~~~~~l~~l~~~-~~~~~-~~~~~~l~~~l~~~l~~~~~~~~r~~al~~l~~l~~ 873 (1076)
-. ..+++ .+.-....+...+.++|..+... .|+.+ ..++..+...+.+-. ++.+...+...+.++.-+++
T Consensus 655 l~-~v~~~------~e~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~-qs~~~~~~~~rl~~L~~L~~ 726 (1176)
T KOG1248|consen 655 LF-TVDPE------FENSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSF-QSSSSPAQASRLKCLKRLLK 726 (1176)
T ss_pred HH-HhhHH------hhccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHH-hccchHHHHHHHHHHHHHHH
Confidence 00 00000 00011234566677777777766 11222 233444555555544 34455578889999999999
Q ss_pred HhhhhhHhhHHhHHHHHHhhccCCChhHHhhhhHHHHHHH--hhcCC----CchHHHHHHHHHHHHhhcCCCCCChhhhh
Q 001442 874 QCREAALKYYETYLPFLLEACNDENQDVRQAAVYGLGVCA--EFGGS----VVKPLVGEALSRLNVVIRHPNALQPENLM 947 (1076)
Q Consensus 874 ~~~~~~~~~~~~ll~~l~~~l~~~~~~vr~~a~~~lg~l~--~~~~~----~~~~~~~~il~~L~~~l~~~~~~~~~~~~ 947 (1076)
.++.....+++..+|-++=.+++.+...|++|+.+|-.++ ...-+ .....+.+.+..+...+... ...
T Consensus 727 ~~~~e~~~~i~k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd------~~~ 800 (1176)
T KOG1248|consen 727 LLSAEHCDLIPKLIPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGD------STR 800 (1176)
T ss_pred hccHHHHHHHHHHHHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhccc------HHH
Confidence 9997777788888888777778889999999998887777 32222 11234555555555554432 122
Q ss_pred HHHHHHHHHHHHHhhcCCCC---CHhhHHHHHHhhCCCCCcHHHHHHHHHHHHHHHhhcCCcccCcCcCchhhHHHHHHH
Q 001442 948 AYDNAVSALGKICQFHRDSI---DAAQVVPAWLNCLPIKGDLIEAKIVHEQLCSMVERSDSDLLGPNHQYLPKIVSVFAE 1024 (1076)
Q Consensus 948 ~~~na~~al~~i~~~~~~~~---~~~~~l~~~l~~lp~~~d~~e~~~~~~~l~~li~~~~~~~~~~~~~~l~~i~~~~~~ 1024 (1076)
++..-+-++++++.....-+ .+..++..+...|-- +..+....+.+++..++..-+...+.+ |++.++..+..
T Consensus 801 ~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s-~sreI~kaAI~fikvlv~~~pe~~l~~---~~~~LL~sll~ 876 (1176)
T KOG1248|consen 801 VVASDIVAITHILQEFKNILDDETLEKLISMVCLYLAS-NSREIAKAAIGFIKVLVYKFPEECLSP---HLEELLPSLLA 876 (1176)
T ss_pred HHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHcCCHHHHhh---hHHHHHHHHHH
Confidence 22222788888888776655 367777777666643 344667788888888887666566665 89999888777
Q ss_pred HhcCCCCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCCHHHHHHHHhh
Q 001442 1025 ILCGKDLATEQTLSRIVNLLKQLQQTLPPATLASTWSSLQPQQQLALQSI 1074 (1076)
Q Consensus 1025 ~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~l~~~ 1074 (1076)
.+. .. +...+.++..+++.+...|+-+.+++++ |.+.++.|..+
T Consensus 877 ls~-d~--k~~~r~Kvr~LlekLirkfg~~eLe~~~---pee~~klL~nI 920 (1176)
T KOG1248|consen 877 LSH-DH--KIKVRKKVRLLLEKLIRKFGAEELESFL---PEEDMKLLTNI 920 (1176)
T ss_pred HHH-hh--hHHHHHHHHHHHHHHHHHhCHHHHHhhC---HHHHHHHHHHH
Confidence 553 21 4668888999999999999865455554 57777766553
No 35
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.48 E-value=1.3e-10 Score=124.36 Aligned_cols=429 Identities=16% Similarity=0.212 Sum_probs=262.8
Q ss_pred HHHHHHHHHhhhcCchHHHHHHHHHHccCCCHHHHHHHHHHHHHhcccCCCCcccCCCHhHHHHHHHHHHHHHhh--cch
Q 001442 40 SEAELLFNLCKQQDPDSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQL--ESA 117 (1076)
Q Consensus 40 ~~Ae~~L~~~~~~~p~~~~~~L~~il~~~~~~~~R~~a~v~Lk~~i~~~~~~~w~~l~~~~~~~lk~~Ll~~l~~--~~~ 117 (1076)
..|-.+|..++.+ ++.| ..+-+++....+-....+|+..+|+++... +..+++..-..+|+.|+..+.. +..
T Consensus 2 ~~A~~~L~~FQ~S-~~aW-~i~~eiL~~~~~~~~~~FaaqTlr~Ki~~~----F~~Lp~~~~~slrdsl~thl~~l~~~~ 75 (559)
T KOG2081|consen 2 EKANNWLGNFQKS-NDAW-QICEEILSQKCDVEALLFAAQTLRNKIQYD----FSELPPLTHASLRDSLITHLKELHDHP 75 (559)
T ss_pred chHhHHHHHhCCC-hHHH-HHHHHHHcccchHHHHHHHHHHHHHHHHhh----HHhcCcchhHHHHHHHHHHHHHHHhCC
Confidence 4688899999994 5554 667777776778899999999999999887 7889998888899977766542 334
Q ss_pred hhHHHHHHHHHHHHHhcccCCCCcchhHHHHHHhhcCCCHHHHHHHHHHHHHH---------------------------
Q 001442 118 KSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQL--------------------------- 170 (1076)
Q Consensus 118 ~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~~~~~~~r~~al~~L~~l--------------------------- 170 (1076)
..+|.+++.+++.+|-+. + .|.+-++.+++...+..+.++ .-+.+|..+
T Consensus 76 ~~i~tQL~vavA~Lal~~-~--~W~n~I~e~v~~~~~~~~~~~-~lLeiL~VlPEE~~~~~~~~~a~Rr~e~~~~l~~~~ 151 (559)
T KOG2081|consen 76 DVIRTQLAVAVAALALHM-P--EWVNPIFELVRALSNKHPAVP-ILLEILKVLPEETRDIRLTVGANRRHEFIDELAAQV 151 (559)
T ss_pred chHHHHHHHHHHHHHHHh-H--hhcchHHHHHHHhhcCCccHH-HHHHHHHhCcHhhcchhhhhhhhhHHHHHHHHHHhH
Confidence 489999999999998865 2 688766666655554433211 111111111
Q ss_pred ------HHHHHHhhCCc-c----------------------------------------------hHh------------
Q 001442 171 ------IINFIQCLTSS-A----------------------------------------------DRD------------ 185 (1076)
Q Consensus 171 ------~~~~~~~l~~~-~----------------------------------------------~~~------------ 185 (1076)
+..+++.-+.+ + ...
T Consensus 152 ~~~L~~l~~lLe~~~l~~~~~l~~Vl~~l~SWl~~~~~~~d~v~a~~pLi~l~F~sl~~~~lhe~At~cic~ll~~~~~~ 231 (559)
T KOG2081|consen 152 SKVLVFLSDLLERSDLKSSDDLEQVLRCLGSWLRLHVFPPDQVLASFPLITLAFRSLSDDELHEEATECICALLYCSLDR 231 (559)
T ss_pred HHHHHHHHHHHhhcCCChhhHHHHHHHHHhhhhhhccCCHHHHHhhhHHHHHHHHHcccchhhHHHHHHHHHHHHHhhhh
Confidence 00011000000 0 000
Q ss_pred ----HHhhh---HHHHHHHHHHH-HhCCCHHHHHHHHHHHHHHHccCcHHHHH---hHHHHHHHHHHHhcCCCcchhHHH
Q 001442 186 ----RFQDL---LPLMMRTLTES-LNNGNEATAQEALELLIELAGTEPRFLRR---QLVDVVGSMLQIAEAESLEEGTRH 254 (1076)
Q Consensus 186 ----~~~~l---~p~~l~~l~~~-~~~~~~~~~~~~~~~l~~l~~~~~~~~~~---~l~~l~~~l~~~~~~~~~~~~~r~ 254 (1076)
.+... -+.++...... ....|.+.....+++|..+.+.+...+.. ....+++.++-..+.. +.++-.
T Consensus 232 ~~~~~~~~~l~~~v~~L~~~~~~a~~~~d~d~~~a~~RIFtel~eaf~~~i~~np~~~l~~vellLl~~~h~--~~evie 309 (559)
T KOG2081|consen 232 SEGLPLAAILFIGVIILETAFHLAMAGEDLDKNEAICRIFTELGEAFVVLISTNPEEFLRIVELLLLVAGHN--DTEVIE 309 (559)
T ss_pred hccCchhHHHhccccccchHHHHhhcccCHHHHHHHHHHHHHHHHHHHHHHhhCCCcchhHHHHHHHhccCC--chhhhh
Confidence 00000 01112222221 12345666777778887777655443322 3345666666655443 558888
Q ss_pred HHHHHHHHHHHhh--cccchhhccchhhHHHHHHHHHHhhcCCCCCccccCCCCCCcccCCCCchhhHHHHHHHHHHHcC
Q 001442 255 LAIEFVITLAEAR--ERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALG 332 (1076)
Q Consensus 255 ~al~~l~~l~~~~--~~~~~~~~~~~~~~~~l~~~l~~~l~~~~dd~~~~~~~~e~~d~~e~~~~~~a~~~l~~l~~~~~ 332 (1076)
.++.+|..+.+.- .+.+.....+.+|..+++..+....+.+.+... .. |+ +++-..-+....+.+...+...|
T Consensus 310 ~SF~fW~~lse~l~~~~~~~~~~~frpy~~rLvs~l~~h~qlp~~~~~---l~-Ee-~~~f~~fR~~v~dvl~Dv~~iig 384 (559)
T KOG2081|consen 310 ASFNFWYSLSEELTLTDDDEALGIFRPYFLRLVSLLKRHVQLPPDQFD---LP-EE-ESEFFEFRLKVGDVLKDVAFIIG 384 (559)
T ss_pred hhHHhhhhhHHHHhccccHHHHHHhHHHHHHHHHHHHHHccCCCcccc---Cc-cc-hhHHHHHHHHHHHHHHHHHHHhC
Confidence 8999999998742 122333345678999999999988877652110 00 01 01111123445667777777788
Q ss_pred CCcchHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhc
Q 001442 333 GNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLG 412 (1076)
Q Consensus 333 ~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~ 412 (1076)
+.+.+..+...+.+ ..+.|..-+|+++.+..++.+.+..-...++.++..+++.-. ...+|++++..+|.+++|+.
T Consensus 385 s~e~lk~~~~~l~e--~~~~We~~EAaLF~l~~~~~~~~~~e~~i~pevl~~i~nlp~--Q~~~~~ts~ll~g~~~ew~~ 460 (559)
T KOG2081|consen 385 SDECLKQMYIRLKE--NNASWEEVEAALFILRAVAKNVSPEENTIMPEVLKLICNLPE--QAPLRYTSILLLGEYSEWVE 460 (559)
T ss_pred cHHHHHHHHHHHcc--CCCchHHHHHHHHHHHHHhccCCccccchHHHHHHHHhCCcc--chhHHHHHHHHHHHHHHHHH
Confidence 76666666555554 567899999999999999998765444566777777765432 23399999999999999986
Q ss_pred hhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCccc--ccCchHHHHHHHHHHhhcCchhHHHHHHHHHH
Q 001442 413 PDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEI--LTPYLDGIVSKLLVLLQNGKQMVQEGALTALA 490 (1076)
Q Consensus 413 ~~~~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~aL~~l~~~~~~~~--l~~~l~~ll~~l~~~l~~~~~~v~~~al~ai~ 490 (1076)
... .....++..+...+.. .. ....+..++..++..+..+. +.|++..+...+....-+ ....- .+..++
T Consensus 461 ~~p--~~le~v~~~~~~~~~~-~~--~as~~a~~~~~i~~~c~~~~~~l~~~~~~l~~~l~~~~~~--~e~a~-l~~~~s 532 (559)
T KOG2081|consen 461 QHP--ELLEPVLRYIRQGLQL-KR--LASAAALAFHRICSACRVQMTCLIPSLLELIRSLDSTQIN--EEAAC-LLQGIS 532 (559)
T ss_pred hCc--HHHHHHHHHHHHHhhh-cc--hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcc--HHHHH-HHHHHH
Confidence 542 5677777778888877 32 77778888888887765331 223333333333333333 22222 455556
Q ss_pred HHHHHhH
Q 001442 491 SVADSSQ 497 (1076)
Q Consensus 491 ~l~~~~~ 497 (1076)
.++...+
T Consensus 533 ~i~~~lp 539 (559)
T KOG2081|consen 533 LIISNLP 539 (559)
T ss_pred HHHhcCC
Confidence 5555544
No 36
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=99.48 E-value=5.3e-09 Score=117.36 Aligned_cols=609 Identities=14% Similarity=0.145 Sum_probs=321.0
Q ss_pred HHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccc---
Q 001442 383 SMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEIL--- 459 (1076)
Q Consensus 383 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~aL~~l~~~~~~~~l--- 459 (1076)
..+++++.|+|..+|.++..+++.++.+--| +-+++++|.+++.+.+ .+..-..+|..+|..+.+....+.+
T Consensus 93 e~Ll~~l~~sn~ki~~~vay~is~Ia~~D~P----d~WpElv~~i~~~l~~-~n~n~i~~am~vL~el~~ev~~ee~~~~ 167 (1005)
T KOG2274|consen 93 EQLLNLLDDSNSKIRSAVAYAISSIAAVDYP----DEWPELVPFILKLLSS-GNENSIHGAMRVLAELSDEVDVEEMFFV 167 (1005)
T ss_pred HHHHhhhhccccccchHHHHHHHHHHhccCc----hhhHHHHHHHHHHHhc-cchhhhhhHHHHHHHHHHHHHHHHHhcc
Confidence 4556666799999999999999999987554 5689999999999998 7777778999999999876532211
Q ss_pred cCchHHHHHHHHHHhhcCchhHHHHHH-----HHHHHHHHHhHh----hHHhhHhhhHHHHHHHHhcc---CCchhhhhH
Q 001442 460 TPYLDGIVSKLLVLLQNGKQMVQEGAL-----TALASVADSSQE----HFQKYYDAVMPFLKAILVNA---TDKSNRMLR 527 (1076)
Q Consensus 460 ~~~l~~ll~~l~~~l~~~~~~v~~~al-----~ai~~l~~~~~~----~~~~~~~~i~~~L~~~l~~~---~~~~~~~lr 527 (1076)
.|..-.-|..++......+...|..+. ..+..++...++ ....++.++++....++... ++..+..+|
T Consensus 168 ~~~~l~~m~~~f~~~~~~s~~~~~~aa~~~lf~sc~~li~~~~e~~~~~~~~~~s~~l~~~~~~l~h~l~~~~g~~~~~~ 247 (1005)
T KOG2274|consen 168 GPVSLAEMYRIFALTIVYSIITRLGAARGKLFTSCLTLITNVEEVWAEHVKVFLSQILNQFMDILEHPLQRNDGSDFSLR 247 (1005)
T ss_pred cccchhhhhhhhhhccccchhHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccchHHHH
Confidence 121112233444444544443333332 333333333322 22345555555555554442 333567889
Q ss_pred HHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHh---------cC------C----CCCCCh------hhHHHHHHHHHH
Q 001442 528 AKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQ---------GS------Q----METDDP------TTSYMLQAWARL 582 (1076)
Q Consensus 528 ~~a~~~l~~i~~~~g~~~~~~~~~~ii~~l~~~~---------~~------~----~~~~~~------~~~~~~~~~~~l 582 (1076)
...+.|++.+...+.+ ...|+...++....+.. .+ . .+.+.. ..-+++.+...+
T Consensus 248 ~eilk~~t~l~~nfp~-~~~~~~~~~~~~vw~~~~~~~~~yir~~V~~~e~~~~~~~dsd~e~~~~~~l~i~i~eF~s~i 326 (1005)
T KOG2274|consen 248 MEILKCLTQLVENFPS-LINPFMMGMFSIVWQTLEKILAVYVRESVNGTEDSYDARYDSDPEEKSVETLVIQIVEFLSTI 326 (1005)
T ss_pred HHHHHHHHHHHHhhHH-hhhHHHHhhhhHHHHHHHHHHhhhhhhhccccccCcccccCCchhhhChHHhhhhHHHHHHHH
Confidence 9999999999877663 44555444433332211 10 0 111111 112233333333
Q ss_pred HHHh--ccCcccchhhhhHHHHHhcc----------CCCCccccCCCCCccccCCCCcccchhhcCCceeeecchhHHH-
Q 001442 583 CKCL--GQDFLPYMSVVMPPLLQSAQ----------LKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEE- 649 (1076)
Q Consensus 583 ~~~~--~~~~~~~l~~i~~~ll~~~~----------~~~~~~~~~~d~d~~~~~~d~~~~~~~~~~~~~~~v~~~~~~~- 649 (1076)
+... .+.+..-++..++.+...++ .+++..+.++++. + ..+.... +....|.+.+..+
T Consensus 327 ~t~~~~~~ti~~~l~~lI~~~v~y~Qlseeqie~w~sD~~~fV~dEd~~---~---~~~~~~r---d~~~~v~~~f~~~~ 397 (1005)
T KOG2274|consen 327 VTNRFLSKTIKKNLPELIYQLVAYLQLSEEQIEVWTSDVNQFVADEDDG---Y---TARISVR---DLLLEVITTFGNEG 397 (1005)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHhccHHHhhccCCCC---c---hhhhhHH---HHHHHHHHhccchh
Confidence 3321 12222234444444433332 2333333333221 0 0000000 0000111100000
Q ss_pred ------------HHH-H--------------HHHHHHHHHHhhhcccccHHHHHHHhhhcccccCCHHHHHHHHHHHHHH
Q 001442 650 ------------KAT-A--------------CNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPEL 702 (1076)
Q Consensus 650 ------------k~~-A--------------~~~l~~i~~~~~~~~~p~l~~~~~~l~~~l~~~~~~~vr~~a~~~l~~L 702 (1076)
+++ | ..+........+.....++......+...+.....+..-..+..+++..
T Consensus 398 i~~i~~a~~~~~~es~at~~~~~~~~wk~qea~l~a~~~~~~~~~~dd~l~~l~~~~~~~l~~~e~P~Ll~Ra~~~i~~f 477 (1005)
T KOG2274|consen 398 INPIQDAAGRHFQESQATYLFNNESWWKIQEALLVAAESVRIDDANDDKLIELTIMIDNGLVYQESPFLLLRAFLTISKF 477 (1005)
T ss_pred hhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhhcccCcchHHHHHHHHHHHHhhcccccCHHHHHHHHHHHHHH
Confidence 000 0 0000000000011111122222222222222111222222333333322
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Q 001442 703 LRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVEALHKEPDTEICASMLDSLNECIQISGPLLDEGQVRSIVDEIKQVIT 782 (1076)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~l~~l~~~i~~~g~~~~~~~~~~~~~~l~~~l~ 782 (1076)
.... ....++...++...+..+..+..+-++..++.++. ..+++.+.....+.+++.+..+..
T Consensus 478 s~~~--------------~~~~~~~~~fl~~~v~~l~~~~~~~~ki~a~~~~~---~~~~~~vl~~~~p~ild~L~qlas 540 (1005)
T KOG2274|consen 478 SSST--------------VINPQLLQHFLNATVNALTMDVPPPVKISAVRAFC---GYCKVKVLLSLQPMILDGLLQLAS 540 (1005)
T ss_pred Hhhh--------------ccchhHHHHHHHHHHHhhccCCCCchhHHHHHHHH---hccCceeccccchHHHHHHHHHcc
Confidence 2211 11334556666666777766655555544544443 223443333444445554444332
Q ss_pred HHHHhHHHHHHhhcCCCCChHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHhHhhh-hcCCCCHHHH
Q 001442 783 ASSSRKRERAERAKAEDFDAEESELIKEENEQEEEVFDQVGEILGTLIKTFKAAFLPFFDELSSYLTPM-WGKDKTAEER 861 (1076)
Q Consensus 783 ~~~~~~~~~~~~~~~ed~d~~~~~~~~e~~e~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~-l~~~~~~~~r 861 (1076)
+. +.++...+.+.+..+++.-++.....-..++|.++.. ++.+.++.+-
T Consensus 541 ~~------------------------------s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~ 590 (1005)
T KOG2274|consen 541 KS------------------------------SDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVA 590 (1005)
T ss_pred cc------------------------------cHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHH
Confidence 21 1345566778888888776654333333466665553 3334455555
Q ss_pred HHHHHHHHHHHHHhhhhhHhhHHhHHHHHHhhccCCC----hhHHhhhhHHHHHHHhhcCCCc-hHHHHHHHHHHHHhhc
Q 001442 862 RIAICIFDDVAEQCREAALKYYETYLPFLLEACNDEN----QDVRQAAVYGLGVCAEFGGSVV-KPLVGEALSRLNVVIR 936 (1076)
Q Consensus 862 ~~al~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~----~~vr~~a~~~lg~l~~~~~~~~-~~~~~~il~~L~~~l~ 936 (1076)
..+-.++.+++.. .....|+...++|.++.-+..+. +..+..|+--+..+.++.++.+ ...+...++.+.+..-
T Consensus 591 ~~~qd~f~el~q~-~~~~g~m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tl 669 (1005)
T KOG2274|consen 591 SLAQDLFEELLQI-AANYGPMQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITL 669 (1005)
T ss_pred HHHHHHHHHHHHH-HHhhcchHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhhee
Confidence 5555666666653 34556788899999999888655 7788888888999999988653 4456778888888764
Q ss_pred CCCCCChhhhhHHHHHHHHHHHHHhhcCCCC---------CHhhHHHHHHhhCCCCCcHHHHHHHHHHHHHHHhhcCCcc
Q 001442 937 HPNALQPENLMAYDNAVSALGKICQFHRDSI---------DAAQVVPAWLNCLPIKGDLIEAKIVHEQLCSMVERSDSDL 1007 (1076)
Q Consensus 937 ~~~~~~~~~~~~~~na~~al~~i~~~~~~~~---------~~~~~l~~~l~~lp~~~d~~e~~~~~~~l~~li~~~~~~~ 1007 (1076)
.. ++....+|+-.|+.-++....+.+ .+-.++..+-..|....++..+..+-..+..|+.+...+
T Consensus 670 Hs-----dD~~tlQ~~~EcLra~Is~~~eq~~t~~~e~g~~~~yImqV~sqLLdp~~sds~a~~VG~lV~tLit~a~~e- 743 (1005)
T KOG2274|consen 670 HS-----DDHETLQNATECLRALISVTLEQLLTWHDEPGHNLWYIMQVLSQLLDPETSDSAAAFVGPLVLTLITHASSE- 743 (1005)
T ss_pred ec-----CChHHHHhHHHHHHHHHhcCHHHHHhhccCCCccHHHHHHHHHHHcCCccchhHHHHHhHHHHHHHHHHHHH-
Confidence 43 235788999999999987643322 233555555555544444455667777788888766444
Q ss_pred cCcCcCchhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCCHH
Q 001442 1008 LGPNHQYLPKIVSVFAEILCGKDLATEQTLSRIVNLLKQLQQTLPPATLASTWSSLQPQ 1066 (1076)
Q Consensus 1008 ~~~~~~~l~~i~~~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~ 1066 (1076)
+++ ++++|+..+..-|.+.+ +....+.++-++.++...-+++ +-.++.++|.+
T Consensus 744 l~~---n~d~IL~Avisrmq~ae--~lsviQsLi~VfahL~~t~~~~-~l~FL~Slp~~ 796 (1005)
T KOG2274|consen 744 LGP---NLDQILRAVISRLQQAE--TLSVIQSLIMVFAHLVHTDLDQ-LLNFLSSLPGP 796 (1005)
T ss_pred hch---hHHHHHHHHHHHHHHhh--hHHHHHHHHHHHHHHhhCCHHH-HHHHHHhCCCC
Confidence 455 79999998887775332 2335555555666665555555 77788877643
No 37
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.47 E-value=5.2e-10 Score=132.49 Aligned_cols=474 Identities=17% Similarity=0.209 Sum_probs=291.0
Q ss_pred HHHHHHHHhhcCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhh
Q 001442 339 VASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQ 418 (1076)
Q Consensus 339 ~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~ 418 (1076)
...+.+.+.+.+++...|+.+.+++..+....++ .+.-+++.+.+.+.++++.+|..|+.+++.+.. .+
T Consensus 42 ~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~----~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~~-------~~ 110 (526)
T PF01602_consen 42 FLFMEVIKLISSKDLELKRLGYLYLSLYLHEDPE----LLILIINSLQKDLNSPNPYIRGLALRTLSNIRT-------PE 110 (526)
T ss_dssp STHHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHH----HHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH-S-------HH
T ss_pred hHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcchh----HHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhcc-------cc
Confidence 3445555677789999999999999999988776 223367788889999999999999999999872 34
Q ss_pred hhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHhHh
Q 001442 419 FHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQE 498 (1076)
Q Consensus 419 ~~~~ll~~l~~~l~~~~~~~v~~~a~~aL~~l~~~~~~~~l~~~l~~ll~~l~~~l~~~~~~v~~~al~ai~~l~~~~~~ 498 (1076)
..+.+++.+.+.+.+ +++.||..|+.++..+....+ +.+.+. +++.+..++.+.++.++..|+.++..+ ...++
T Consensus 111 ~~~~l~~~v~~ll~~-~~~~VRk~A~~~l~~i~~~~p-~~~~~~---~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~ 184 (526)
T PF01602_consen 111 MAEPLIPDVIKLLSD-PSPYVRKKAALALLKIYRKDP-DLVEDE---LIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDD 184 (526)
T ss_dssp HHHHHHHHHHHHHHS-SSHHHHHHHHHHHHHHHHHCH-CCHHGG---HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHH
T ss_pred hhhHHHHHHHHHhcC-CchHHHHHHHHHHHHHhccCH-HHHHHH---HHHHHhhhccCCcchhHHHHHHHHHHH-ccCcc
Confidence 567889999999999 999999999999999998754 322221 688899999999999999999999888 32222
Q ss_pred hHHhhHhhhHHHHHHHHhccCCchhhhhHHHHHHHHHHHHHHhchhhhhhhH--HHHHHHHHHHhcCCCCCCChhhHHHH
Q 001442 499 HFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDA--KQVMEVLMSLQGSQMETDDPTTSYML 576 (1076)
Q Consensus 499 ~~~~~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~g~~~~~~~~--~~ii~~l~~~~~~~~~~~~~~~~~~~ 576 (1076)
.+.+.++.+...|.+.+.. .+.+ ++..+++++..++..- . ... ..+++.+..
T Consensus 185 ~~~~~~~~~~~~L~~~l~~---~~~~-~q~~il~~l~~~~~~~----~-~~~~~~~~i~~l~~----------------- 238 (526)
T PF01602_consen 185 SYKSLIPKLIRILCQLLSD---PDPW-LQIKILRLLRRYAPME----P-EDADKNRIIEPLLN----------------- 238 (526)
T ss_dssp HHTTHHHHHHHHHHHHHTC---CSHH-HHHHHHHHHTTSTSSS----H-HHHHHHHHHHHHHH-----------------
T ss_pred hhhhhHHHHHHHhhhcccc---cchH-HHHHHHHHHHhcccCC----h-hhhhHHHHHHHHHH-----------------
Confidence 2223444444444444321 1122 2333333332221100 0 000 112222211
Q ss_pred HHHHHHHHHhccCcccchhhhhHHHHHhccCCCCccccCCCCCccccCCCCcccchhhcCCceeeecchhHHHHHHHHHH
Q 001442 577 QAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATACNM 656 (1076)
Q Consensus 577 ~~~~~l~~~~~~~~~~~l~~i~~~ll~~~~~~~~~~~~~~d~d~~~~~~d~~~~~~~~~~~~~~~v~~~~~~~k~~A~~~ 656 (1076)
.+... .. .-.-.|+.+
T Consensus 239 ---------------------------~l~s~----------------------------------~~---~V~~e~~~~ 254 (526)
T PF01602_consen 239 ---------------------------LLQSS----------------------------------SP---SVVYEAIRL 254 (526)
T ss_dssp ---------------------------HHHHH----------------------------------HH---HHHHHHHHH
T ss_pred ---------------------------Hhhcc----------------------------------cc---HHHHHHHHH
Confidence 11000 00 000112222
Q ss_pred HHHHHHHhhhcccccHHHHHHHhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHH
Q 001442 657 LCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVE 736 (1076)
Q Consensus 657 l~~i~~~~~~~~~p~l~~~~~~l~~~l~~~~~~~vr~~a~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~ 736 (1076)
+..+.. -.+.+..+++.+..++.+ .++++|-.+..++..+..... ..+. .. ...+.
T Consensus 255 i~~l~~-----~~~~~~~~~~~L~~lL~s-~~~nvr~~~L~~L~~l~~~~~-------------~~v~---~~--~~~~~ 310 (526)
T PF01602_consen 255 IIKLSP-----SPELLQKAINPLIKLLSS-SDPNVRYIALDSLSQLAQSNP-------------PAVF---NQ--SLILF 310 (526)
T ss_dssp HHHHSS-----SHHHHHHHHHHHHHHHTS-SSHHHHHHHHHHHHHHCCHCH-------------HHHG---TH--HHHHH
T ss_pred HHHhhc-----chHHHHhhHHHHHHHhhc-ccchhehhHHHHHHHhhcccc-------------hhhh---hh--hhhhh
Confidence 221111 011345667777777774 478899999988877754321 1111 10 11123
Q ss_pred HHccCCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcCCCCChHhhhhhhhhhhhHH
Q 001442 737 ALHKEPDTEICASMLDSLNECIQISGPLLDEGQVRSIVDEIKQVITASSSRKRERAERAKAEDFDAEESELIKEENEQEE 816 (1076)
Q Consensus 737 ~l~~~~~~~~~~~~l~~l~~~i~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ed~d~~~~~~~~e~~e~~~ 816 (1076)
.+..+++..++..++..+..+.. .+.+..+++.+.+.+... .+.
T Consensus 311 ~l~~~~d~~Ir~~~l~lL~~l~~-------~~n~~~Il~eL~~~l~~~-----------------------------~d~ 354 (526)
T PF01602_consen 311 FLLYDDDPSIRKKALDLLYKLAN-------ESNVKEILDELLKYLSEL-----------------------------SDP 354 (526)
T ss_dssp HHHCSSSHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHC-------------------------------H
T ss_pred eecCCCChhHHHHHHHHHhhccc-------ccchhhHHHHHHHHHHhc-----------------------------cch
Confidence 45556788888888777766654 345556666655554221 013
Q ss_pred HHHHHHHHHHHHHHHHhhhchhhhHHHHHHhHhhhhcCCCCHHHHHHHHHHHHHHHHHhhhhhHhhHHhHHHHHHhhccC
Q 001442 817 EVFDQVGEILGTLIKTFKAAFLPFFDELSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREAALKYYETYLPFLLEACND 896 (1076)
Q Consensus 817 ~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~ 896 (1076)
.++..+...++.++..++.....+++.++..+. .........++..+..++...+.. ....+..+++.+.+
T Consensus 355 ~~~~~~i~~I~~la~~~~~~~~~~v~~l~~ll~-----~~~~~~~~~~~~~i~~ll~~~~~~----~~~~l~~L~~~l~~ 425 (526)
T PF01602_consen 355 DFRRELIKAIGDLAEKFPPDAEWYVDTLLKLLE-----ISGDYVSNEIINVIRDLLSNNPEL----REKILKKLIELLED 425 (526)
T ss_dssp HHHHHHHHHHHHHHHHHGSSHHHHHHHHHHHHH-----CTGGGCHCHHHHHHHHHHHHSTTT----HHHHHHHHHHHHTS
T ss_pred hhhhhHHHHHHHHHhccCchHHHHHHHHHHhhh-----hccccccchHHHHHHHHhhcChhh----hHHHHHHHHHHHHH
Confidence 366678888888888887766555555554442 222334555677777777664433 23456666666665
Q ss_pred -CChhHHhhhhHHHHHHHhhcCCCchHHHHHHHHHHHHhhcCCCCCChhhhhHHHHHHHHHHHHHhhcCCCCCHhhHHHH
Q 001442 897 -ENQDVRQAAVYGLGVCAEFGGSVVKPLVGEALSRLNVVIRHPNALQPENLMAYDNAVSALGKICQFHRDSIDAAQVVPA 975 (1076)
Q Consensus 897 -~~~~vr~~a~~~lg~l~~~~~~~~~~~~~~il~~L~~~l~~~~~~~~~~~~~~~na~~al~~i~~~~~~~~~~~~~l~~ 975 (1076)
.++.+++.++|.+|+.+...++ .. ..+.++..+.+.+... ...++..+..++.++....|..-..+.+++.
T Consensus 426 ~~~~~~~~~~~wilGEy~~~~~~-~~-~~~~~~~~l~~~~~~~------~~~vk~~ilt~~~Kl~~~~~~~~~~~~i~~~ 497 (526)
T PF01602_consen 426 ISSPEALAAAIWILGEYGELIEN-TE-SAPDILRSLIENFIEE------SPEVKLQILTALAKLFKRNPENEVQNEILQF 497 (526)
T ss_dssp SSSHHHHHHHHHHHHHHCHHHTT-TT-HHHHHHHHHHHHHTTS------HHHHHHHHHHHHHHHHHHSCSTTHHHHHHHH
T ss_pred hhHHHHHHHHHhhhcccCCcccc-cc-cHHHHHHHHHHhhccc------cHHHHHHHHHHHHHHHhhCCchhhHHHHHHH
Confidence 6788999999999999998876 22 5677777777776543 4579999999999999998854213455555
Q ss_pred HHhhCCC-CCcHHHHHHHHHHH
Q 001442 976 WLNCLPI-KGDLIEAKIVHEQL 996 (1076)
Q Consensus 976 ~l~~lp~-~~d~~e~~~~~~~l 996 (1076)
+....-. ..|.+....++..+
T Consensus 498 ~~~~~~~~s~~~evr~Ra~~y~ 519 (526)
T PF01602_consen 498 LLSLATEDSSDPEVRDRAREYL 519 (526)
T ss_dssp HHCHHHHS-SSHHHHHHHHHHH
T ss_pred HHHHhccCCCCHHHHHHHHHHH
Confidence 5544431 23566666665543
No 38
>PTZ00429 beta-adaptin; Provisional
Probab=99.47 E-value=6.9e-09 Score=121.44 Aligned_cols=443 Identities=12% Similarity=0.129 Sum_probs=270.6
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHc---cCCCHHHHHHHHHHHHHhcccCCCCcccCCCHh
Q 001442 23 PFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQ---RSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLH 99 (1076)
Q Consensus 23 ~l~~lL~~~~s~d~~~r~~Ae~~L~~~~~~~p~~~~~~L~~il~---~~~~~~~R~~a~v~Lk~~i~~~~~~~w~~l~~~ 99 (1076)
-+..++..+.++|-+.||-.--.+..+.+.+|+.. ...+.-+. ++.+|.+|-+|.-.|-++- .++
T Consensus 69 LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pela-lLaINtl~KDl~d~Np~IRaLALRtLs~Ir-----------~~~ 136 (746)
T PTZ00429 69 LFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEKA-LLAVNTFLQDTTNSSPVVRALAVRTMMCIR-----------VSS 136 (746)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHHH-HHHHHHHHHHcCCCCHHHHHHHHHHHHcCC-----------cHH
Confidence 34456777778888889998888888777677742 22233333 2678888888775555432 244
Q ss_pred HHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhcccCCC-CcchhHHHHHHhhcCCCHHHHHHHHHHHHHHHH------
Q 001442 100 TQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPEN-GWPELLPFMFQCVSSDSVKLQESAFLIFAQLII------ 172 (1076)
Q Consensus 100 ~~~~lk~~Ll~~l~~~~~~~vr~~~~~~i~~ia~~~~~~~-~w~~ll~~l~~~~~~~~~~~r~~al~~L~~l~~------ 172 (1076)
..+.+-..+.+.+. +.++-||++++.++..+.+.. |.- .-.++++.|..++.+.++.+...|+.+|..+..
T Consensus 137 i~e~l~~~lkk~L~-D~~pYVRKtAalai~Kly~~~-pelv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l 214 (746)
T PTZ00429 137 VLEYTLEPLRRAVA-DPDPYVRKTAAMGLGKLFHDD-MQLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKI 214 (746)
T ss_pred HHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHhhC-cccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhh
Confidence 55555556666665 789999999999999997743 211 112466778888899999999999888877731
Q ss_pred --------HHHHhhCCcchHhHH------h-------hhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccC-cHHHHH
Q 001442 173 --------NFIQCLTSSADRDRF------Q-------DLLPLMMRTLTESLNNGNEATAQEALELLIELAGTE-PRFLRR 230 (1076)
Q Consensus 173 --------~~~~~l~~~~~~~~~------~-------~l~p~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~-~~~~~~ 230 (1076)
.++..+.+-..+... . .-.-.++..+...+++.++.+...+++++..+.... +..+..
T Consensus 215 ~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~~e~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~ 294 (746)
T PTZ00429 215 ESSNEWVNRLVYHLPECNEWGQLYILELLAAQRPSDKESAETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIER 294 (746)
T ss_pred HHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHH
Confidence 122222111111100 0 011245666666677778888999999888876543 343444
Q ss_pred hHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHhhcccchhhccchhhHHHHHHHHHHhhcCCCCCccccCCCCCCcc
Q 001442 231 QLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDED 310 (1076)
Q Consensus 231 ~l~~l~~~l~~~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~dd~~~~~~~~e~~d 310 (1076)
.+..+...++.+.. .+.++|..++.-+..++.. .|.. +..-+...+-.. .|+
T Consensus 295 ~~~rl~~pLv~L~s---s~~eiqyvaLr~I~~i~~~---~P~l-------f~~~~~~Ff~~~----~Dp----------- 346 (746)
T PTZ00429 295 CTVRVNTALLTLSR---RDAETQYIVCKNIHALLVI---FPNL-------LRTNLDSFYVRY----SDP----------- 346 (746)
T ss_pred HHHHHHHHHHHhhC---CCccHHHHHHHHHHHHHHH---CHHH-------HHHHHHhhhccc----CCc-----------
Confidence 44445455555532 3567899988888777762 3322 111122221111 111
Q ss_pred cCCCCchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCC
Q 001442 311 AGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFR 390 (1076)
Q Consensus 311 ~~e~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~ 390 (1076)
. .+...-|+.+..... +.-+..++..+.++..+.+...+..++.++|.++...+. ....++..++..+.
T Consensus 347 -----~-yIK~~KLeIL~~Lan-e~Nv~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~~~----~a~~cV~~Ll~ll~ 415 (746)
T PTZ00429 347 -----P-FVKLEKLRLLLKLVT-PSVAPEILKELAEYASGVDMVFVVEVVRAIASLAIKVDS----VAPDCANLLLQIVD 415 (746)
T ss_pred -----H-HHHHHHHHHHHHHcC-cccHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhChH----HHHHHHHHHHHHhc
Confidence 1 234444555544444 455666778888888888899999999999999986654 34455666666665
Q ss_pred CCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhc--cCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHH
Q 001442 391 DPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAM--DDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVS 468 (1076)
Q Consensus 391 d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l--~~~~~~~v~~~a~~aL~~l~~~~~~~~l~~~l~~ll~ 468 (1076)
+....+. .++.++..+....+. . .+++.++..+ ..-.++..+.+..|.|+.+++..+ ..+.++.
T Consensus 416 ~~~~~v~-e~i~vik~IlrkyP~----~---~il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~~I~------~a~~~L~ 481 (746)
T PTZ00429 416 RRPELLP-QVVTAAKDIVRKYPE----L---LMLDTLVTDYGADEVVEEEAKVSLLWMLGEYCDFIE------NGKDIIQ 481 (746)
T ss_pred CCchhHH-HHHHHHHHHHHHCcc----H---HHHHHHHHhhcccccccHHHHHHHHHHHHhhHhhHh------hHHHHHH
Confidence 5444443 355666555443321 1 1455555433 222467888899999999987543 1345666
Q ss_pred HHHHHhhcCchhHHHHHHHHHHHHHHHhHhhHHhhHhhhHHHHHHHHhccCCchhhhhHHHHHHHHHHHH
Q 001442 469 KLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVG 538 (1076)
Q Consensus 469 ~l~~~l~~~~~~v~~~al~ai~~l~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~i~ 538 (1076)
.++.-+...+..||-.++.+...+....+.+..+ .+..++....+ +.++..+|.+|..-...+.
T Consensus 482 ~~i~~f~~E~~~VqlqlLta~vKlfl~~p~~~~~----~l~~vL~~~t~--~~~d~DVRDRA~~Y~rLLs 545 (746)
T PTZ00429 482 RFIDTIMEHEQRVQLAILSAAVKMFLRDPQGMEP----QLNRVLETVTT--HSDDPDVRDRAFAYWRLLS 545 (746)
T ss_pred HHHhhhccCCHHHHHHHHHHHHHHHhcCcHHHHH----HHHHHHHHHHh--cCCChhHHHHHHHHHHHHc
Confidence 6666666678889999998888887766544333 23333332222 2344568888876666553
No 39
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.41 E-value=2.3e-09 Score=126.98 Aligned_cols=477 Identities=16% Similarity=0.189 Sum_probs=307.9
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHhhhc--CchHHHHHHHHHHccCCCHHHHHHHHHHHHHhcccCCCCcccCCCHh
Q 001442 22 APFETLISHLMSTSNEQRSEAELLFNLCKQQ--DPDSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLH 99 (1076)
Q Consensus 22 ~~l~~lL~~~~s~d~~~r~~Ae~~L~~~~~~--~p~~~~~~L~~il~~~~~~~~R~~a~v~Lk~~i~~~~~~~w~~l~~~ 99 (1076)
+++..+++... .+...|+.+-+.+-.+... +.+......+..+ ++.+...|.++=+.+......+ ++
T Consensus 7 ~el~~~~~~~~-~~~~~~~~~l~kli~~~~~G~~~~~~~~~vi~l~-~s~~~~~Krl~yl~l~~~~~~~---------~~ 75 (526)
T PF01602_consen 7 QELAKILNSFK-IDISKKKEALKKLIYLMMLGYDISFLFMEVIKLI-SSKDLELKRLGYLYLSLYLHED---------PE 75 (526)
T ss_dssp HHHHHHHHCSS-THHHHHHHHHHHHHHHHHTT---GSTHHHHHCTC-SSSSHHHHHHHHHHHHHHTTTS---------HH
T ss_pred HHHHHHHhcCC-CCHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhcc---------hh
Confidence 45555555554 4666777777666443322 2232223333333 3889999999999999887654 44
Q ss_pred HHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhcccCCCCcchhHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhC
Q 001442 100 TQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLIINFIQCLT 179 (1076)
Q Consensus 100 ~~~~lk~~Ll~~l~~~~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~~~~~~~r~~al~~L~~l~~~~~~~l~ 179 (1076)
..-.+-+.+.+-+. ++++.+|..+..+++.+... .-.+.+++.+.+++.++++.+|..|+.++..+...
T Consensus 76 ~~~l~~n~l~kdl~-~~n~~~~~lAL~~l~~i~~~----~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~------ 144 (526)
T PF01602_consen 76 LLILIINSLQKDLN-SPNPYIRGLALRTLSNIRTP----EMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRK------ 144 (526)
T ss_dssp HHHHHHHHHHHHHC-SSSHHHHHHHHHHHHHH-SH----HHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHhhc-CCCHHHHHHHHhhhhhhccc----chhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhcc------
Confidence 45556666666665 57889999999999888643 34578899999999999999999999999776422
Q ss_pred CcchHhHHhhhHHH-HHHHHHHHHhCCCHHHHHHHHHHHHHHHccCcHHHHHhHHHHHHHHHHHhcCCCcchhHHHHHHH
Q 001442 180 SSADRDRFQDLLPL-MMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIE 258 (1076)
Q Consensus 180 ~~~~~~~~~~l~p~-~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~r~~al~ 258 (1076)
..+.++. +++.+.+.+.+.++.++..++.++..+ +..+......++.++..+.+.+. ..++..+...++
T Consensus 145 -------~p~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~~~~~~~~~~L~~~l~--~~~~~~q~~il~ 214 (526)
T PF01602_consen 145 -------DPDLVEDELIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYKSLIPKLIRILCQLLS--DPDPWLQIKILR 214 (526)
T ss_dssp -------CHCCHHGGHHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHTTHHHHHHHHHHHHHT--CCSHHHHHHHHH
T ss_pred -------CHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhhhhHHHHHHHhhhccc--ccchHHHHHHHH
Confidence 1223333 456666667888999999999999998 44444433455666666666653 346777777777
Q ss_pred HHHHHHHhhcccchhhccchhhHHHHHHHHHHhhcCCCCCccccCCCCCCcccCCCCchhhHHHHHHHHHHHcCCCcchH
Q 001442 259 FVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVP 338 (1076)
Q Consensus 259 ~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~dd~~~~~~~~e~~d~~e~~~~~~a~~~l~~l~~~~~~~~~~~ 338 (1076)
++..++.. .+.. ... ..+++.+...+.. ....+..+++..+....+......
T Consensus 215 ~l~~~~~~---~~~~---~~~--~~~i~~l~~~l~s--------------------~~~~V~~e~~~~i~~l~~~~~~~~ 266 (526)
T PF01602_consen 215 LLRRYAPM---EPED---ADK--NRIIEPLLNLLQS--------------------SSPSVVYEAIRLIIKLSPSPELLQ 266 (526)
T ss_dssp HHTTSTSS---SHHH---HHH--HHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHSSSHHHHH
T ss_pred HHHhcccC---Chhh---hhH--HHHHHHHHHHhhc--------------------cccHHHHHHHHHHHHhhcchHHHH
Confidence 77766542 1111 100 3345555444431 122345556666665554334566
Q ss_pred HHHHHHHHhhcCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhh
Q 001442 339 VASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQ 418 (1076)
Q Consensus 339 ~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~ 418 (1076)
.+.+.+..++.+++++.|..++.++..++...+..+. +.... +.....++++.||..++..+..++. ..
T Consensus 267 ~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~~v~-~~~~~---~~~l~~~~d~~Ir~~~l~lL~~l~~-------~~ 335 (526)
T PF01602_consen 267 KAINPLIKLLSSSDPNVRYIALDSLSQLAQSNPPAVF-NQSLI---LFFLLYDDDPSIRKKALDLLYKLAN-------ES 335 (526)
T ss_dssp HHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCHHHHG-THHHH---HHHHHCSSSHHHHHHHHHHHHHH---------HH
T ss_pred hhHHHHHHHhhcccchhehhHHHHHHHhhcccchhhh-hhhhh---hheecCCCChhHHHHHHHHHhhccc-------cc
Confidence 7788888899999999999999999999887643332 21111 2222358889999999999999885 24
Q ss_pred hhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHhHh
Q 001442 419 FHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQE 498 (1076)
Q Consensus 419 ~~~~ll~~l~~~l~~~~~~~v~~~a~~aL~~l~~~~~~~~l~~~l~~ll~~l~~~l~~~~~~v~~~al~ai~~l~~~~~~ 498 (1076)
....+++.+.+.+.+.+++.++..++.++..++.... +..+..++.+++++......+...++..+..+....++
T Consensus 336 n~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~-----~~~~~~v~~l~~ll~~~~~~~~~~~~~~i~~ll~~~~~ 410 (526)
T PF01602_consen 336 NVKEILDELLKYLSELSDPDFRRELIKAIGDLAEKFP-----PDAEWYVDTLLKLLEISGDYVSNEIINVIRDLLSNNPE 410 (526)
T ss_dssp HHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHG-----SSHHHHHHHHHHHHHCTGGGCHCHHHHHHHHHHHHSTT
T ss_pred chhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhccC-----chHHHHHHHHHHhhhhccccccchHHHHHHHHhhcChh
Confidence 5567888888888552478899999999999987763 34567788888899888778888888888888766443
Q ss_pred hHHhhHhhhHHHHHHHHhccCCchhhhhHHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHhcCCCCCCChhhHHHHHH
Q 001442 499 HFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQA 578 (1076)
Q Consensus 499 ~~~~~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~g~~~~~~~~~~ii~~l~~~~~~~~~~~~~~~~~~~~~ 578 (1076)
. ...++..+...+....+ ..++..++-++|..+...+. - .....++..+.+.... .+..++..++.+
T Consensus 411 ~----~~~~l~~L~~~l~~~~~---~~~~~~~~wilGEy~~~~~~--~-~~~~~~~~~l~~~~~~---~~~~vk~~ilt~ 477 (526)
T PF01602_consen 411 L----REKILKKLIELLEDISS---PEALAAAIWILGEYGELIEN--T-ESAPDILRSLIENFIE---ESPEVKLQILTA 477 (526)
T ss_dssp T----HHHHHHHHHHHHTSSSS---HHHHHHHHHHHHHHCHHHTT--T-THHHHHHHHHHHHHTT---SHHHHHHHHHHH
T ss_pred h----hHHHHHHHHHHHHHhhH---HHHHHHHHhhhcccCCcccc--c-ccHHHHHHHHHHhhcc---ccHHHHHHHHHH
Confidence 2 23346666666654222 23455566666666554442 0 1355566666654332 233467777777
Q ss_pred HHHHHHHhc
Q 001442 579 WARLCKCLG 587 (1076)
Q Consensus 579 ~~~l~~~~~ 587 (1076)
+..+....+
T Consensus 478 ~~Kl~~~~~ 486 (526)
T PF01602_consen 478 LAKLFKRNP 486 (526)
T ss_dssp HHHHHHHSC
T ss_pred HHHHHhhCC
Confidence 666654443
No 40
>PTZ00429 beta-adaptin; Provisional
Probab=99.40 E-value=2.2e-08 Score=117.20 Aligned_cols=471 Identities=11% Similarity=0.103 Sum_probs=275.6
Q ss_pred CcchHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhch
Q 001442 334 NTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGP 413 (1076)
Q Consensus 334 ~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~ 413 (1076)
..+. .+++.+...+.+++...|+-+++.+...++..++. .--.++.+.+.+.|+||.+|..|+.+++.+..
T Consensus 64 ~DvS-~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pel----alLaINtl~KDl~d~Np~IRaLALRtLs~Ir~---- 134 (746)
T PTZ00429 64 RDVS-YLFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEK----ALLAVNTFLQDTTNSSPVVRALAVRTMMCIRV---- 134 (746)
T ss_pred CCch-HHHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHH----HHHHHHHHHHHcCCCCHHHHHHHHHHHHcCCc----
Confidence 4443 35555556888899999999999999888765542 12357888899999999999999999888653
Q ss_pred hHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCchhHHHHHHHHHHHHH
Q 001442 414 DLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVA 493 (1076)
Q Consensus 414 ~~~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~aL~~l~~~~~~~~l~~~l~~ll~~l~~~l~~~~~~v~~~al~ai~~l~ 493 (1076)
....+.+++.+.+++.| +++.||..|+.++.++....+ +.+. -..+++.|..++.+.++.|...|+.++..+.
T Consensus 135 ---~~i~e~l~~~lkk~L~D-~~pYVRKtAalai~Kly~~~p-elv~--~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~ 207 (746)
T PTZ00429 135 ---SSVLEYTLEPLRRAVAD-PDPYVRKTAAMGLGKLFHDDM-QLFY--QQDFKKDLVELLNDNNPVVASNAAAIVCEVN 207 (746)
T ss_pred ---HHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHhhCc-cccc--ccchHHHHHHHhcCCCccHHHHHHHHHHHHH
Confidence 34567888889999999 999999999999999977654 2221 1245667777899999999999999999998
Q ss_pred HHhHhhHHhhHhhhHHHHHHHHhccCCchhhhhHHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHhcCCCCCCChhhH
Q 001442 494 DSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTS 573 (1076)
Q Consensus 494 ~~~~~~~~~~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~g~~~~~~~~~~ii~~l~~~~~~~~~~~~~~~~ 573 (1076)
...+..+. .....+..|...+... + .| .+...++++. .... + -......+++.+...... .+..+
T Consensus 208 ~~~~~~l~-l~~~~~~~Ll~~L~e~-~--EW-~Qi~IL~lL~---~y~P-~-~~~e~~~il~~l~~~Lq~---~N~AV-- 272 (746)
T PTZ00429 208 DYGSEKIE-SSNEWVNRLVYHLPEC-N--EW-GQLYILELLA---AQRP-S-DKESAETLLTRVLPRMSH---QNPAV-- 272 (746)
T ss_pred HhCchhhH-HHHHHHHHHHHHhhcC-C--hH-HHHHHHHHHH---hcCC-C-CcHHHHHHHHHHHHHhcC---CCHHH--
Confidence 76554332 1122222333333221 1 22 2334444442 2211 1 122345677776663322 12222
Q ss_pred HHHHHHHHHHHHhccCcc-cchhhh----hHHHHHhccCCCCccccCCCCCccccCCCCcccchhhcCCceeeecchhHH
Q 001442 574 YMLQAWARLCKCLGQDFL-PYMSVV----MPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLE 648 (1076)
Q Consensus 574 ~~~~~~~~l~~~~~~~~~-~~l~~i----~~~ll~~~~~~~~~~~~~~d~d~~~~~~d~~~~~~~~~~~~~~~v~~~~~~ 648 (1076)
++.+...+... ..... .....+ .+.++...+.++ +
T Consensus 273 -Vl~Aik~il~l-~~~~~~~~~~~~~~rl~~pLv~L~ss~~--------------------------------------e 312 (746)
T PTZ00429 273 -VMGAIKVVANL-ASRCSQELIERCTVRVNTALLTLSRRDA--------------------------------------E 312 (746)
T ss_pred -HHHHHHHHHHh-cCcCCHHHHHHHHHHHHHHHHHhhCCCc--------------------------------------c
Confidence 22332222221 11111 111221 122222221111 2
Q ss_pred HHHHHHHHHHHHHHHhhhcccccHHHHHHHhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHH
Q 001442 649 EKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSD 728 (1076)
Q Consensus 649 ~k~~A~~~l~~i~~~~~~~~~p~l~~~~~~l~~~l~~~~~~~vr~~a~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 728 (1076)
-|-.++..+..++...+..|.+++ ..+.-..+|+ ..||......|..++... . +.
T Consensus 313 iqyvaLr~I~~i~~~~P~lf~~~~----~~Ff~~~~Dp--~yIK~~KLeIL~~Lane~---------------N----v~ 367 (746)
T PTZ00429 313 TQYIVCKNIHALLVIFPNLLRTNL----DSFYVRYSDP--PFVKLEKLRLLLKLVTPS---------------V----AP 367 (746)
T ss_pred HHHHHHHHHHHHHHHCHHHHHHHH----HhhhcccCCc--HHHHHHHHHHHHHHcCcc---------------c----HH
Confidence 234566667777777666666553 3333344543 468888888877765421 1 22
Q ss_pred HHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcCCCCChHhhhhh
Q 001442 729 FIIPALVEALHKEPDTEICASMLDSLNECIQISGPLLDEGQVRSIVDEIKQVITASSSRKRERAERAKAEDFDAEESELI 808 (1076)
Q Consensus 729 ~i~~~l~~~l~~~~~~~~~~~~l~~l~~~i~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ed~d~~~~~~~ 808 (1076)
.++..|.+... +.+.+++..++.++..|...+. .....+++.+.+++....
T Consensus 368 ~IL~EL~eYa~-d~D~ef~r~aIrAIg~lA~k~~-----~~a~~cV~~Ll~ll~~~~----------------------- 418 (746)
T PTZ00429 368 EILKELAEYAS-GVDMVFVVEVVRAIASLAIKVD-----SVAPDCANLLLQIVDRRP----------------------- 418 (746)
T ss_pred HHHHHHHHHhh-cCCHHHHHHHHHHHHHHHHhCh-----HHHHHHHHHHHHHhcCCc-----------------------
Confidence 34555555554 5678888899999988875542 344555555555543210
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHhHhhhhcCCCCHHHHHHHHHHHHHHHHHhhhhhHhhHHhHHH
Q 001442 809 KEENEQEEEVFDQVGEILGTLIKTFKAAFLPFFDELSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREAALKYYETYLP 888 (1076)
Q Consensus 809 ~e~~e~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~ll~ 888 (1076)
. +...+...+..+.+.++..+ .+..++..+. ...-..++.|...+.++|++++..+. .+.++.
T Consensus 419 -------~-~v~e~i~vik~IlrkyP~~~--il~~L~~~~~--~~~i~e~~AKaaiiWILGEy~~~I~~-----a~~~L~ 481 (746)
T PTZ00429 419 -------E-LLPQVVTAAKDIVRKYPELL--MLDTLVTDYG--ADEVVEEEAKVSLLWMLGEYCDFIEN-----GKDIIQ 481 (746)
T ss_pred -------h-hHHHHHHHHHHHHHHCccHH--HHHHHHHhhc--ccccccHHHHHHHHHHHHhhHhhHhh-----HHHHHH
Confidence 0 11234555666677776543 1222222110 01123556677778899988776533 245565
Q ss_pred HHHhhccCCChhHHhhhhHHHHHHHhhcCCCchHHHHHHHHHHHHhhcCCCCCChhhhhHHHHHHH
Q 001442 889 FLLEACNDENQDVRQAAVYGLGVCAEFGGSVVKPLVGEALSRLNVVIRHPNALQPENLMAYDNAVS 954 (1076)
Q Consensus 889 ~l~~~l~~~~~~vr~~a~~~lg~l~~~~~~~~~~~~~~il~~L~~~l~~~~~~~~~~~~~~~na~~ 954 (1076)
.+++.+.++++.||.....+...+....++.. ...++.+...+...+ ++.++||.|..
T Consensus 482 ~~i~~f~~E~~~VqlqlLta~vKlfl~~p~~~----~~~l~~vL~~~t~~~----~d~DVRDRA~~ 539 (746)
T PTZ00429 482 RFIDTIMEHEQRVQLAILSAAVKMFLRDPQGM----EPQLNRVLETVTTHS----DDPDVRDRAFA 539 (746)
T ss_pred HHHhhhccCCHHHHHHHHHHHHHHHhcCcHHH----HHHHHHHHHHHHhcC----CChhHHHHHHH
Confidence 56677777889999888888887777766433 334455554443221 35678887753
No 41
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.40 E-value=1.7e-10 Score=124.93 Aligned_cols=353 Identities=18% Similarity=0.227 Sum_probs=245.8
Q ss_pred CCCHHHHHHHHHHHHHhcccCCCCcccCCCHhHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhcccCCC---Ccchh
Q 001442 68 SPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPEN---GWPEL 144 (1076)
Q Consensus 68 ~~~~~~R~~a~v~Lk~~i~~~~~~~w~~l~~~~~~~lk~~Ll~~l~~~~~~~vr~~~~~~i~~ia~~~~~~~---~w~~l 144 (1076)
+.++..+..+..-+|+.+++.. -+.+..-.+.++...+.+.|..+.++.++..++.++..||+...... -=...
T Consensus 77 S~~~~~q~~a~~~~rkllS~~~---~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~aga 153 (514)
T KOG0166|consen 77 SDDPQQQLTATQAFRKLLSKER---NPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGA 153 (514)
T ss_pred CCCHHHHHHHHHHHHHHHccCC---CCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCc
Confidence 5667778888888999988752 25566666778888899999877789999999999999998543321 12457
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhCCcchHhHHhhhH--HHHHHHHHHHHhCCCH-HHHHHHHHHHHHHH
Q 001442 145 LPFMFQCVSSDSVKLQESAFLIFAQLIINFIQCLTSSADRDRFQDLL--PLMMRTLTESLNNGNE-ATAQEALELLIELA 221 (1076)
Q Consensus 145 l~~l~~~~~~~~~~~r~~al~~L~~l~~~~~~~l~~~~~~~~~~~l~--p~~l~~l~~~~~~~~~-~~~~~~~~~l~~l~ 221 (1076)
+|.+.+++.+++..+++-|.++|+.+... ...++.++ ..++..|...+...+. .....+.++|..++
T Consensus 154 vp~fi~Ll~s~~~~v~eQavWALgNIagd----------s~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlc 223 (514)
T KOG0166|consen 154 VPIFIQLLSSPSADVREQAVWALGNIAGD----------SPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLC 223 (514)
T ss_pred hHHHHHHhcCCcHHHHHHHHHHHhccccC----------ChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHH
Confidence 88899999999999999999999887311 11112111 2233333333444333 56677888888888
Q ss_pred ccC-cHHHHHhHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHhhcccchhhccchhhHHHHHHHHHHhhcCCCCCcc
Q 001442 222 GTE-PRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPL 300 (1076)
Q Consensus 222 ~~~-~~~~~~~l~~l~~~l~~~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~dd~~ 300 (1076)
+.. |..=...+..+++.+...+.+ .|+++..-|+-.+..+... +. . .+..+
T Consensus 224 rgk~P~P~~~~v~~iLp~L~~ll~~--~D~~Vl~Da~WAlsyLsdg----~n------e----~iq~v------------ 275 (514)
T KOG0166|consen 224 RGKNPSPPFDVVAPILPALLRLLHS--TDEEVLTDACWALSYLTDG----SN------E----KIQMV------------ 275 (514)
T ss_pred cCCCCCCcHHHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHHhcC----Ch------H----HHHHH------------
Confidence 765 332223455566666666633 3566666666555555441 10 0 00000
Q ss_pred ccCCCCCCcccCCCCchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhcHHHHHHhHH-
Q 001442 301 WHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLE- 379 (1076)
Q Consensus 301 ~~~~~~e~~d~~e~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~- 379 (1076)
. .. .+.|.+.+.+.+.+.+.+-.|+.++|.++.|........+.
T Consensus 276 ---------------------------i-~~-------gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~ 320 (514)
T KOG0166|consen 276 ---------------------------I-DA-------GVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINS 320 (514)
T ss_pred ---------------------------H-Hc-------cchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhc
Confidence 0 00 13445556677777888889999999998887654433333
Q ss_pred HHHHHHHhhCC-CCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCccc
Q 001442 380 QVLSMVLNSFR-DPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEI 458 (1076)
Q Consensus 380 ~i~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~aL~~l~~~~~~~~ 458 (1076)
..++.+...+. .+...+|..|||+++.++..-...++.-.-..++|.|+..++. .+.++|..|+||+.+++....++.
T Consensus 321 ~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~-~ef~~rKEAawaIsN~ts~g~~~q 399 (514)
T KOG0166|consen 321 GALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQT-AEFDIRKEAAWAISNLTSSGTPEQ 399 (514)
T ss_pred ChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhc-cchHHHHHHHHHHHhhcccCCHHH
Confidence 46788888887 6677799999999999998777666555566899999999998 889999999999999998876554
Q ss_pred ccCch--HHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHhHh
Q 001442 459 LTPYL--DGIVSKLLVLLQNGKQMVQEGALTALASVADSSQE 498 (1076)
Q Consensus 459 l~~~l--~~ll~~l~~~l~~~~~~v~~~al~ai~~l~~~~~~ 498 (1076)
+ .|+ ..+++.+..+|.-.+.++-..++.++..+-...+.
T Consensus 400 i-~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~ 440 (514)
T KOG0166|consen 400 I-KYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVGEA 440 (514)
T ss_pred H-HHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHHHH
Confidence 3 343 24788889999888888888899999988775543
No 42
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.40 E-value=1.9e-06 Score=96.45 Aligned_cols=417 Identities=13% Similarity=0.194 Sum_probs=231.0
Q ss_pred hHHHHHhhccCCCChhH-HHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHh-hc--CchhHHHHHHHHHHHHHHHhHh
Q 001442 423 VLPALAGAMDDFQNPRV-QAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLL-QN--GKQMVQEGALTALASVADSSQE 498 (1076)
Q Consensus 423 ll~~l~~~l~~~~~~~v-~~~a~~aL~~l~~~~~~~~l~~~l~~ll~~l~~~l-~~--~~~~v~~~al~ai~~l~~~~~~ 498 (1076)
.+..+-+-++. .+... |.+||..+..++++.+.. +.+.+...+..++.-. .+ .++.-+..++..+.+++...+.
T Consensus 362 pleYiRRDlEG-sDvdTRRR~a~dlvrgL~~~fe~~-vt~v~~~~v~~~l~~y~~nPS~nWk~kd~aiyL~talaik~~t 439 (960)
T KOG1992|consen 362 PLEYIRRDLEG-SDVDTRRRAAIDLVRGLCKNFEGQ-VTGVFSSEVQRLLDQYSKNPSGNWKKKDRAIYLVTALAIKGQT 439 (960)
T ss_pred HHHHHHHhccc-CCcchhHHHHHHHHHHHHHHhcch-hHHHHHHHHHHHHHHhccCCCccccccchhhhhhHHHHhhcch
Confidence 33444445554 33333 567889999999998644 5566666666666533 33 3566777788888777765321
Q ss_pred ------------hHHhhH-hhhHHHHHHHHhccCCchhhhhHHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHhcCCC
Q 001442 499 ------------HFQKYY-DAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQM 565 (1076)
Q Consensus 499 ------------~~~~~~-~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~g~~~~~~~~~~ii~~l~~~~~~~~ 565 (1076)
+...|+ ..+.|.|.. .+..+...+|..+++-+-.+-..+|++....+++.++..+ ..
T Consensus 440 ~~~Gvtstn~lvdv~~Ff~~~ilp~L~s----~~vn~~pilka~aIKy~~~FR~ql~~~~lm~~~p~li~~L----~a-- 509 (960)
T KOG1992|consen 440 AKHGVTSTNELVDVVDFFANQILPDLLS----PNVNEFPILKADAIKYIYTFRNQLGKEHLMALLPRLIRFL----EA-- 509 (960)
T ss_pred hhcceeeccccccHHHHHHHHhhHHhcc----CccccccchhhcccceeeeecccCChHHHHHHHHHHHHhc----cC--
Confidence 122333 445565543 2333455677776666666666666654444444444432 21
Q ss_pred CCCChhhHHHHHHHHHHHHHhcc---------CcccchhhhhHHHHHhccCCCCccccCCCCCccccCCCCcccchhhcC
Q 001442 566 ETDDPTTSYMLQAWARLCKCLGQ---------DFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLG 636 (1076)
Q Consensus 566 ~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~l~~i~~~ll~~~~~~~~~~~~~~d~d~~~~~~d~~~~~~~~~~ 636 (1076)
....+..|+..++..+-...++ ++.||+..++..+++.++...+ .
T Consensus 510 -~s~vvhsYAA~aiEkil~vre~~~~~if~~~~iap~~~~ll~nLf~a~s~p~~-----------------~-------- 563 (960)
T KOG1992|consen 510 -ESRVVHSYAAIAIEKLLTVRENSNAKIFGAEDIAPFVEILLTNLFKALSLPGK-----------------A-------- 563 (960)
T ss_pred -cchHHHHHHHHHHHhccccccCccccccchhhcchHHHHHHHHHHHhccCCcc-----------------c--------
Confidence 1223556665555554433332 4778888888888877754211 0
Q ss_pred CceeeecchhHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHhhhcc----cccCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 001442 637 DKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLL----KFYFHEEVRKAAVSAMPELLRSAKLAIEK 712 (1076)
Q Consensus 637 ~~~~~v~~~~~~~k~~A~~~l~~i~~~~~~~~~p~l~~~~~~l~~~l----~~~~~~~vr~~a~~~l~~L~~~~~~~~~~ 712 (1076)
+-+.-++++-.+.....+...|+.+.++..+.+.+ .+..++.--..-..+++-++....
T Consensus 564 ------------EneylmKaImRii~i~~~~i~p~~~~~l~~Lteiv~~v~KNPs~P~fnHYLFEsi~~li~~t~----- 626 (960)
T KOG1992|consen 564 ------------ENEYLMKAIMRIISILQSAIIPHAPELLRQLTEIVEEVSKNPSNPQFNHYLFESIGLLIRKTC----- 626 (960)
T ss_pred ------------ccHHHHHHHHHHHHhCHHhhhhhhhHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHh-----
Confidence 01223445555555566667777766665544433 222233333444455555544332
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 001442 713 GLAPGRNESYVKQLSDFIIPALVEALHKEPDTEICASMLDSLNECIQISGPLLDEGQVRSIVDEIKQVITASSSRKRERA 792 (1076)
Q Consensus 713 ~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~l~~l~~~i~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 792 (1076)
..++..+..+-..++|.+...+.+| -.+....+++-++.++...+.. .++...+++..+ |...+=
T Consensus 627 ----~~~~~~vs~~e~aL~p~fq~Il~eD-I~EfiPYvfQlla~lve~~~~~-ip~~~~~l~~~l---Lsp~lW------ 691 (960)
T KOG1992|consen 627 ----KANPSAVSSLEEALFPVFQTILSED-IQEFIPYVFQLLAVLVEHSSGT-IPDSYSPLFPPL---LSPNLW------ 691 (960)
T ss_pred ----ccCchHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCCC-CchhHHHHHHHh---cCHHHH------
Confidence 2233445666677777776666543 4566677888888888877642 233333333322 211110
Q ss_pred HhhcCCCCChHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhchh--hhHHHHHHhHhhhhcCCCCHHHHHHHHHHHHH
Q 001442 793 ERAKAEDFDAEESELIKEENEQEEEVFDQVGEILGTLIKTFKAAFL--PFFDELSSYLTPMWGKDKTAEERRIAICIFDD 870 (1076)
Q Consensus 793 ~~~~~ed~d~~~~~~~~e~~e~~~~~~~~~~~~l~~l~~~~~~~~~--~~~~~l~~~l~~~l~~~~~~~~r~~al~~l~~ 870 (1076)
+ ....+-++..++.++.+.....+. ..+..++-.+-+++ .++..+ ..++.++..
T Consensus 692 -----------------~----r~gNipalvrLl~aflk~g~~~~~~~~~l~~iLGifqkLi-aSka~D--h~GF~LLn~ 747 (960)
T KOG1992|consen 692 -----------------K----RSGNIPALVRLLQAFLKTGSQIVEAADKLSGILGIFQKLI-ASKAND--HHGFYLLNT 747 (960)
T ss_pred -----------------h----hcCCcHHHHHHHHHHHhcCchhhcccccchhHHHHHHHHh-cCcccc--hhHHHHHHH
Confidence 0 012234567777777777665543 33344444444444 233222 246788888
Q ss_pred HHHHhhh-hhHhhHHhHHHHHHhhccCCC--hhHHhhhhHHHHHHHhhcCCCchHHHHHHHHHHHH
Q 001442 871 VAEQCRE-AALKYYETYLPFLLEACNDEN--QDVRQAAVYGLGVCAEFGGSVVKPLVGEALSRLNV 933 (1076)
Q Consensus 871 l~~~~~~-~~~~~~~~ll~~l~~~l~~~~--~~vr~~a~~~lg~l~~~~~~~~~~~~~~il~~L~~ 933 (1076)
++++.+. .+.||..+++-.++..++++. ..++.-.++..-...++++......+..+-+.+..
T Consensus 748 i~~~~~~~~~~py~k~i~~llf~RlqnskT~kf~k~~~vF~~~~~ik~~~~~l~e~~d~IQ~~~fg 813 (960)
T KOG1992|consen 748 IIESIPPNELAPYMKQIFGLLFQRLQNSKTEKFVKSFIVFFSLFTIKKGGLMLAEVIDGIQPGMFG 813 (960)
T ss_pred HHhcCCHhhhhHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchhHHH
Confidence 8888875 467899999999999998753 34555555554455555554444444443333333
No 43
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.39 E-value=1.9e-10 Score=124.39 Aligned_cols=360 Identities=18% Similarity=0.216 Sum_probs=250.9
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhCCcc-hHhHHhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHcc
Q 001442 145 LPFMFQCVSSDSVKLQESAFLIFAQLIINFIQCLTSSA-DRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGT 223 (1076)
Q Consensus 145 l~~l~~~~~~~~~~~r~~al~~L~~l~~~~~~~l~~~~-~~~~~~~l~p~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~ 223 (1076)
.+.+.+.+.+++...+..+...+..+++. -.++. ....-...+|.++..+. .+.++..+..+.++|..++..
T Consensus 68 ~~~~~~~~~S~~~~~q~~a~~~~rkllS~----~~~ppi~~vi~~G~v~~lV~~l~---~~~~~~lq~eAAWaLTnIAsg 140 (514)
T KOG0166|consen 68 LELMLAALYSDDPQQQLTATQAFRKLLSK----ERNPPIDEVIQSGVVPRLVEFLS---RDDNPTLQFEAAWALTNIASG 140 (514)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHcc----CCCCCHHHHHHcCcHHHHHHHHc---cCCChhHHHHHHHHHHHHhcC
Confidence 56667777788877777777776554311 11111 11111244555544443 245688999999999999986
Q ss_pred CcHHHHHhHH-HHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHhhcccchhhccchhhH--HHHHHHHHHhhcCCCCCcc
Q 001442 224 EPRFLRRQLV-DVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFI--NRLFAILMSMLLDIEDDPL 300 (1076)
Q Consensus 224 ~~~~~~~~l~-~l~~~l~~~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~--~~l~~~l~~~l~~~~dd~~ 300 (1076)
..+.-.-.+. ..++.++..+. +.++.++++|.-.+..++.. .| .++ .++ ..+++.++..+....
T Consensus 141 tse~T~~vv~agavp~fi~Ll~--s~~~~v~eQavWALgNIagd---s~-~~R---d~vl~~g~l~pLl~~l~~~~---- 207 (514)
T KOG0166|consen 141 TSEQTKVVVDAGAVPIFIQLLS--SPSADVREQAVWALGNIAGD---SP-DCR---DYVLSCGALDPLLRLLNKSD---- 207 (514)
T ss_pred chhhccccccCCchHHHHHHhc--CCcHHHHHHHHHHHhccccC---Ch-HHH---HHHHhhcchHHHHHHhcccc----
Confidence 6544332222 34555666664 35789999999999999872 33 222 222 235555655554321
Q ss_pred ccCCCCCCcccCCCCchhhHHHHHHHHHHHcCCC---cchHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhcHHHHHHh
Q 001442 301 WHSAETEDEDAGESSNYSVGQECLDRLAIALGGN---TIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKN 377 (1076)
Q Consensus 301 ~~~~~~e~~d~~e~~~~~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~ 377 (1076)
..+..+.+.++|..++....|. ..+..++|.+...+.+.|..+..-|++++++++++..+.+.-.
T Consensus 208 ------------~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~v 275 (514)
T KOG0166|consen 208 ------------KLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMV 275 (514)
T ss_pred ------------chHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHH
Confidence 1234567889999999876322 3456688888899999999999999999999999988766544
Q ss_pred HH-HHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCc
Q 001442 378 LE-QVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTP 456 (1076)
Q Consensus 378 l~-~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~aL~~l~~~~~~ 456 (1076)
++ .+++.+...|..+++.|+..|+.++|.++.......+.-.-...+|.+...+...+...++..|||++.+++.+...
T Consensus 276 i~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~ 355 (514)
T KOG0166|consen 276 IDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQE 355 (514)
T ss_pred HHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHH
Confidence 44 67899999999999999999999999987654333222245678888888888536667999999999999986543
Q ss_pred ccccCchH-HHHHHHHHHhhcCchhHHHHHHHHHHHHHHHhHhhHHhhHh--hhHHHHHHHHhccCCchhhhhHHHHHHH
Q 001442 457 EILTPYLD-GIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYD--AVMPFLKAILVNATDKSNRMLRAKSMEC 533 (1076)
Q Consensus 457 ~~l~~~l~-~ll~~l~~~l~~~~~~v~~~al~ai~~l~~~~~~~~~~~~~--~i~~~L~~~l~~~~~~~~~~lr~~a~~~ 533 (1076)
. +...++ .++|.|+.++++.+.++|+.|..+|+.+......+-..|+- .+++.+..++. ..+ .+ +-..++++
T Consensus 356 q-iqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~-~~D--~~-ii~v~Ld~ 430 (514)
T KOG0166|consen 356 Q-IQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLT-CPD--VK-IILVALDG 430 (514)
T ss_pred H-HHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhccc-CCC--hH-HHHHHHHH
Confidence 2 333333 78999999999999999999999999998877766666763 48888888873 222 22 24567777
Q ss_pred HHHHHHHh
Q 001442 534 ISLVGMAV 541 (1076)
Q Consensus 534 l~~i~~~~ 541 (1076)
+..+-...
T Consensus 431 l~nil~~~ 438 (514)
T KOG0166|consen 431 LENILKVG 438 (514)
T ss_pred HHHHHHHH
Confidence 77776543
No 44
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=99.25 E-value=2.4e-08 Score=115.31 Aligned_cols=486 Identities=15% Similarity=0.126 Sum_probs=306.1
Q ss_pred ChHHHHHHHHHHHHhhhcCch----HHHHHHHHHHccCCCHHHHHHHHHHHHHhcccCCCCcccCCC-HhHHHHHHHHHH
Q 001442 35 SNEQRSEAELLFNLCKQQDPD----SLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLS-LHTQSSLKSMLL 109 (1076)
Q Consensus 35 d~~~r~~Ae~~L~~~~~~~p~----~~~~~L~~il~~~~~~~~R~~a~v~Lk~~i~~~~~~~w~~l~-~~~~~~lk~~Ll 109 (1076)
.+.+|+.+-+.+.......|. .....++..+..+..-..|-.|+.+++..... ++ +..|.++++..-
T Consensus 172 et~vr~k~ve~l~~v~~~~~~~~~~~~lv~l~~~l~~~d~~~sr~sacglf~~~~~~--------~~~~~vk~elr~~~~ 243 (759)
T KOG0211|consen 172 ETGVREKAVESLLKVAVGLPKEKLREHLVPLLKRLATGDWFQSRLSACGLFGKLYVS--------LPDDAVKRELRPIVQ 243 (759)
T ss_pred HHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHccchhhhhcchhhhhhhHHhccC--------CChHHHHHHHHHHHH
Confidence 344577777776654333331 12234444444443344566666666665543 34 566777777655
Q ss_pred HHHhhcchhhHHHHHHHHHHHHHhcccCCCCcchhHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhCCcchHhHHhh
Q 001442 110 QSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLIINFIQCLTSSADRDRFQD 189 (1076)
Q Consensus 110 ~~l~~~~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~~~~~~~r~~al~~L~~l~~~~~~~l~~~~~~~~~~~ 189 (1076)
+.- .+..+.||+.++.-.+.+++.......|.+++|.+.++..++...+|+.|+..+..+. ..+.... +
T Consensus 244 ~lc-~d~~~~Vr~~~a~~l~~~a~~~~~~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~----~l~~~~~------d 312 (759)
T KOG0211|consen 244 SLC-QDDTPMVRRAVASNLGNIAKVLESEIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLL----DLLDDDD------D 312 (759)
T ss_pred hhc-cccchhhHHHHHhhhHHHHHHHHHHHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHH----HhcCCch------h
Confidence 544 4779999999999999999976655688999999999999999999999999986663 3333221 3
Q ss_pred hHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccCcHHHHHhHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHhhcc
Q 001442 190 LLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARER 269 (1076)
Q Consensus 190 l~p~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~r~~al~~l~~l~~~~~~ 269 (1076)
....+.+.+.+..+++++.++......+..+...... ...-...+......++ +...+.|.....-...++.+.+.
T Consensus 313 ~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~--~~~~~~~~~~~~~l~~--~~~~e~r~a~a~~~~~l~~~l~~ 388 (759)
T KOG0211|consen 313 VVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGP--SATRTQLVPPVSNLLK--DEEWEVRYAIAKKVQKLACYLNA 388 (759)
T ss_pred hhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhcc--ccCcccchhhHHHHhc--chhhhhhHHhhcchHHHhhhcCc
Confidence 3344556666667788888888888888877654433 1111233444444443 23444555443333333332110
Q ss_pred cchhhccchhhHHHHHHHHHHhhcCCCCCccccCCCCCCcccCCCCchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhc
Q 001442 270 APGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLA 349 (1076)
Q Consensus 270 ~~~~~~~~~~~~~~l~~~l~~~l~~~~dd~~~~~~~~e~~d~~e~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~ 349 (1076)
.+ + ..-..+.++|.+.....+.. ..++.+.+....-+...+|.+..++.+.|.+...++
T Consensus 389 ~~-~---~~i~~~~ilp~~~~lv~d~~-----------------~~vr~a~a~~~~~~~p~~~k~~ti~~llp~~~~~l~ 447 (759)
T KOG0211|consen 389 SC-Y---PNIPDSSILPEVQVLVLDNA-----------------LHVRSALASVITGLSPILPKERTISELLPLLIGNLK 447 (759)
T ss_pred cc-c---cccchhhhhHHHHHHHhccc-----------------chHHHHHhccccccCccCCcCcCccccChhhhhhcc
Confidence 00 0 00122345566554432211 112222222233333344545667778888888888
Q ss_pred CCChhHHHHHHHHHHHHHhhcHH--HHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHH
Q 001442 350 APEWQKHHAALIALAQIAEGCAK--VMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPAL 427 (1076)
Q Consensus 350 ~~~~~~r~aal~~l~~l~~~~~~--~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l 427 (1076)
+....+|...+..+... +++.+ .+...-...+|.+...-.|.+.++|.+..+.+-.++...+..+. -+.+-+.+
T Consensus 448 de~~~V~lnli~~ls~~-~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~~~~~---~~~~~~l~ 523 (759)
T KOG0211|consen 448 DEDPIVRLNLIDKLSLL-EEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLGVEFF---DEKLAELL 523 (759)
T ss_pred hhhHHHHHhhHHHHHHH-HhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhhhHHh---hHHHHHHH
Confidence 88888888887666333 33322 23344567788888888888999999999999999887764332 22344455
Q ss_pred HhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHhHhhHHhhHhhh
Q 001442 428 AGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAV 507 (1076)
Q Consensus 428 ~~~l~~~~~~~v~~~a~~aL~~l~~~~~~~~l~~~l~~ll~~l~~~l~~~~~~v~~~al~ai~~l~~~~~~~~~~~~~~i 507 (1076)
...+.| ....+|.+|...+..++..++. ..+...+++.++....+++...|...+.++..++..+|..+ +...+
T Consensus 524 ~~~l~d-~v~~Ir~~aa~~l~~l~~~~G~---~w~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~ei--~~~~L 597 (759)
T KOG0211|consen 524 RTWLPD-HVYSIREAAARNLPALVETFGS---EWARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQEI--TCEDL 597 (759)
T ss_pred Hhhhhh-hHHHHHHHHHHHhHHHHHHhCc---chhHHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccHH--HHHHH
Confidence 566777 7778999999999999999883 35667888999988888889999999999999999999876 45667
Q ss_pred HHHHHHHHhccCCchhhhhHHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHhcCCCCCCChhhHHHHHHHHHHHH
Q 001442 508 MPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCK 584 (1076)
Q Consensus 508 ~~~L~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~g~~~~~~~~~~ii~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ 584 (1076)
+|.+.....+ ....+|..+...+..+...+.......++.++.+.+.+ +.+-.+|-++..+++.+..
T Consensus 598 lp~~~~l~~D----~vanVR~nvak~L~~i~~~L~~~~~~~~v~pll~~L~~------d~~~dvr~~a~~a~~~i~l 664 (759)
T KOG0211|consen 598 LPVFLDLVKD----PVANVRINVAKHLPKILKLLDESVRDEEVLPLLETLSS------DQELDVRYRAILAFGSIEL 664 (759)
T ss_pred hHHHHHhccC----CchhhhhhHHHHHHHHHhhcchHHHHHHHHHHHHHhcc------CcccchhHHHHHHHHHHHH
Confidence 7777775432 34468888888888887666543333333333333322 1233366666666665533
No 45
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=9.1e-06 Score=94.11 Aligned_cols=453 Identities=14% Similarity=0.177 Sum_probs=255.5
Q ss_pred HhHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhcccCCCCcchhHHHHHHhhcCC-CHHHHHHHHHHHHHHHHHHHH
Q 001442 98 LHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSD-SVKLQESAFLIFAQLIINFIQ 176 (1076)
Q Consensus 98 ~~~~~~lk~~Ll~~l~~~~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~~~-~~~~r~~al~~L~~l~~~~~~ 176 (1076)
|+..+.+...|++.+. +++..||..+|..+|.++... |..--.+.+..++.++.-. ++..-|+|+.+|+.+.. .
T Consensus 336 ~eivE~vie~Lls~l~-d~dt~VrWSaAKg~grvt~rl-p~~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~---r 410 (1133)
T KOG1943|consen 336 PEIVEFVIEHLLSALS-DTDTVVRWSAAKGLGRVTSRL-PPELADQVIGSVIDLFNPAEDDSAWHGACLALAELAL---R 410 (1133)
T ss_pred HHHHHHHHHHHHHhcc-CCcchhhHHHHHHHHHHHccC-cHHHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHh---c
Confidence 4677888899999887 789999999999999998854 4112234555555544433 36778899999988731 1
Q ss_pred hhCCcchHhHHhhhHHHHHHHHHHHH----hCCCHHHHHHHHHHHHHHHccC-cHHHHHhHHHHHHHHHHHhcCCCcchh
Q 001442 177 CLTSSADRDRFQDLLPLMMRTLTESL----NNGNEATAQEALELLIELAGTE-PRFLRRQLVDVVGSMLQIAEAESLEEG 251 (1076)
Q Consensus 177 ~l~~~~~~~~~~~l~p~~l~~l~~~~----~~~~~~~~~~~~~~l~~l~~~~-~~~~~~~l~~l~~~l~~~~~~~~~~~~ 251 (1076)
++- -+..+...+|.+++.+.--- -+....+|..++.+.+.+++.+ +..+.|++..+...++...-- |.+-.
T Consensus 411 GlL---lps~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlF-Drevn 486 (1133)
T KOG1943|consen 411 GLL---LPSLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALF-DREVN 486 (1133)
T ss_pred CCc---chHHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhc-Cchhh
Confidence 111 13344556666665543110 1223468889999999988865 566788888888877765432 23455
Q ss_pred HHHHHHHHHHHHHHhhcccch-------------------------hhccchhhHHHHHHHHHHh-hcCCCCCccccCCC
Q 001442 252 TRHLAIEFVITLAEARERAPG-------------------------MMRKLPQFINRLFAILMSM-LLDIEDDPLWHSAE 305 (1076)
Q Consensus 252 ~r~~al~~l~~l~~~~~~~~~-------------------------~~~~~~~~~~~l~~~l~~~-l~~~~dd~~~~~~~ 305 (1076)
+|..|..++...+.-....|. ....++.|...++..++.. + -.|+
T Consensus 487 cRRAAsAAlqE~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv------~HWd--- 557 (1133)
T KOG1943|consen 487 CRRAASAALQENVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKV------CHWD--- 557 (1133)
T ss_pred HhHHHHHHHHHHhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhccc------cccc---
Confidence 677776655544321000110 0011233444444444332 1 1231
Q ss_pred CCCcccCCCCchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhcHHHH--HH-----h-
Q 001442 306 TEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVM--VK-----N- 377 (1076)
Q Consensus 306 ~e~~d~~e~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~--~~-----~- 377 (1076)
...+..++.+|..++...+ +.+....++-+....-+.+...|++...+.|.++-++...- .. .
T Consensus 558 --------~~irelaa~aL~~Ls~~~p-k~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i 628 (1133)
T KOG1943|consen 558 --------VKIRELAAYALHKLSLTEP-KYLADYVLPPLLDSTLSKDASMRHGVFLAAGEVIGALRKLEPVIKGLDENRI 628 (1133)
T ss_pred --------HHHHHHHHHHHHHHHHhhH-HhhcccchhhhhhhhcCCChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHh
Confidence 1245568888888887765 55554555555556667889999999999999887654211 11 1
Q ss_pred --HHHHHHHHHhhCCCC--ChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhc
Q 001442 378 --LEQVLSMVLNSFRDP--HPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSEN 453 (1076)
Q Consensus 378 --l~~i~~~l~~~l~d~--~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~aL~~l~~~ 453 (1076)
+..+++.+...-.+. ....|.+.+..+.++...-..-..+.........+.+.+.+ ++ .+|..|.+++..++..
T Consensus 629 ~~l~~ii~~~~~~~~~rg~~~lmr~~~~~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~-~n-~i~~~av~av~~l~s~ 706 (1133)
T KOG1943|consen 629 AGLLSIIPPICDRYFYRGQGTLMRQATLKFIEQLSLSKDRLFQDFVIENWQMLLAQNLTL-PN-QIRDAAVSAVSDLVST 706 (1133)
T ss_pred hhhhhhccHHHHHHhccchHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhhcc-hH-HHHHHHHHHHHHHHHH
Confidence 112233222221111 15677777877777764322211111112222233344455 55 7899999999999865
Q ss_pred CCcccccCchH-HHHHHHHHHhhcC-chhHHHHHHHHHHHHHHHhHhhHHhhHhhhHHHHHHHHhccCCchhhhhHHHHH
Q 001442 454 CTPEILTPYLD-GIVSKLLVLLQNG-KQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSM 531 (1076)
Q Consensus 454 ~~~~~l~~~l~-~ll~~l~~~l~~~-~~~v~~~al~ai~~l~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~~~~lr~~a~ 531 (1076)
.-. ..++.. .++...+..+.+. ...+|.....++|.+....=. .++.+.+...+.... .+.-...-|...+
T Consensus 707 y~~--~d~~~~~~li~~~ls~~~~~~~~~~r~g~~lal~~lp~~~i~--~~~q~~lc~~~l~~~---p~d~~a~aR~~~V 779 (1133)
T KOG1943|consen 707 YVK--ADEGEEAPLITRYLSRLTKCSEERIRRGLILALGVLPSELIH--RHLQEKLCKLVLELL---PSDAWAEARQQNV 779 (1133)
T ss_pred HHh--cCchhhhHHHHHHHHHhcCchHHHHHHHHHHHHccCcHHhhc--hHHHHHHHHHHhccC---cccccHHHHHHHH
Confidence 422 122333 4777777777666 567777777777765432110 112222322222211 1111344566777
Q ss_pred HHHHHHHHHhchhhhhhhHHHHHHHHHHHhcC-CC----CCCChhhHHHHHHHHHHHHHh
Q 001442 532 ECISLVGMAVGKDKFRDDAKQVMEVLMSLQGS-QM----ETDDPTTSYMLQAWARLCKCL 586 (1076)
Q Consensus 532 ~~l~~i~~~~g~~~~~~~~~~ii~~l~~~~~~-~~----~~~~~~~~~~~~~~~~l~~~~ 586 (1076)
.++..+...++...+..-..++++.+++..++ .. +....+|+.++.++..+...+
T Consensus 780 ~al~~v~~~~~~~~~~~~~~k~~e~LL~~lddYttd~rGDVGswVReaAm~al~~~~~~l 839 (1133)
T KOG1943|consen 780 KALAHVCKTVTSLLFSESIEKFRETLLNALDDYTTDSRGDVGSWVREAAMKALSSLLDTL 839 (1133)
T ss_pred HHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcccccCccHHHHHHHHHHHHHHhhhhhh
Confidence 88888887777444555556666666663322 11 111237777777766654443
No 46
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=3.6e-05 Score=89.35 Aligned_cols=674 Identities=16% Similarity=0.178 Sum_probs=330.5
Q ss_pred HHHccCcHHHHHhHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHhhcccchhhccchhhHHHHHHHHHHhhcCCCCC
Q 001442 219 ELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDD 298 (1076)
Q Consensus 219 ~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~dd 298 (1076)
......|..+.||++.++..+.........+...-..+.+++..+++...++ ...+.++.-+..+ ..++..+......
T Consensus 57 ~kyQeqP~LLDp~L~~~v~~L~~~v~~~~~d~~~~~l~~e~ly~l~kvrgyK-~v~k~fPh~V~~L-e~il~lL~~~nps 134 (1133)
T KOG1943|consen 57 DKYQEQPHLLDPHLESIVPNLLDIVRKFTIDLGELHLAFEYLYILCKVRGYK-AVLKLFPHQVSDL-EPILDLLERQNPS 134 (1133)
T ss_pred HHHhhchhhccchHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhhccch-hhHHhCCcHHHHH-HHHHHHHhccCcc
Confidence 3445679999999999999988877655555555677788899998864221 1222333322222 2222222211100
Q ss_pred ccccCCCCCCcccCCCCchhhHHHHHHHHHHHcC---------------CCcchHHHHHHHHHhhcCCChhHHHHHHHHH
Q 001442 299 PLWHSAETEDEDAGESSNYSVGQECLDRLAIALG---------------GNTIVPVASEQLPAYLAAPEWQKHHAALIAL 363 (1076)
Q Consensus 299 ~~~~~~~~e~~d~~e~~~~~~a~~~l~~l~~~~~---------------~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l 363 (1076)
+.+.|..-.-.+-.|...+- +..++..++.++..++.+ +|..|.+|...+
T Consensus 135 --------------s~~~~~~ryilLlWLsvlllnPF~l~rlD~s~~~~kt~~i~rI~~~~~~Yl~~-~~~~r~~aalll 199 (1133)
T KOG1943|consen 135 --------------SFSDWETRYILLLWLSVLLLNPFDLSRLDESLTFDKTNVILRILSFFENYLIS-SGILRRSAALLL 199 (1133)
T ss_pred --------------hHHHHHHHHHHHHHHHHHHcCCCcccccCcccccCCchHHHHHHHHHHHHHhc-cchhHHHHHHHH
Confidence 11123332333333332210 011233344444444444 457788888877
Q ss_pred HHHHhhcHHHHHHhHHHHHHHHHhhCCCCChh--HHHHHHHHHHHhhhhhchhHHhhhhhhhH-----------------
Q 001442 364 AQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPR--VRWAAINAIGQLSTDLGPDLQNQFHPQVL----------------- 424 (1076)
Q Consensus 364 ~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~--vr~~a~~~l~~l~~~~~~~~~~~~~~~ll----------------- 424 (1076)
+.+..-. + ..+.+..++.-++..-++..++ +.-..+.++..+.++......-+|....+
T Consensus 200 sk~~sR~-D-~~~~~~~Fl~~~l~~~s~~~~n~~~~~g~L~al~ai~k~~~r~d~l~~~~~~~r~L~~~~~~~d~~~llr 277 (1133)
T KOG1943|consen 200 SKLFSRT-D-VKDLLLSFLDWLLDCPSTETPNIFYKLGFLIALLAIFKHGSRKDLLPYSDTGLRMLSVCRESNDGQSLLR 277 (1133)
T ss_pred HHHcccc-c-HHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHhcchhhhHHHhhhhhHhhcccccccccHhHHH
Confidence 7655211 1 1122344444444444444333 33444555555555443221112222222
Q ss_pred ---HHHHhhcc-----C-CCChhHHHHHHHHHHHhhhc---------------CCcccccCchHHHHHHHHHHhhcCchh
Q 001442 425 ---PALAGAMD-----D-FQNPRVQAHAASAVLNFSEN---------------CTPEILTPYLDGIVSKLLVLLQNGKQM 480 (1076)
Q Consensus 425 ---~~l~~~l~-----~-~~~~~v~~~a~~aL~~l~~~---------------~~~~~l~~~l~~ll~~l~~~l~~~~~~ 480 (1076)
..+++.+. . .++++-. +.+..|..-.+. -+.+.+..+++.++..|+..+++.+..
T Consensus 278 KllvKl~QRiGlv~l~prs~sWrY~-rg~rsl~~nl~~~s~~~~~~~~~~~~d~e~edv~eivE~vie~Lls~l~d~dt~ 356 (1133)
T KOG1943|consen 278 KLLVKLVQRIGLVSLKPRSPSWRYS-RGTRSLASNLDPDSFAPSEPVILQQDDDEGEDVPEIVEFVIEHLLSALSDTDTV 356 (1133)
T ss_pred HHHHHHHHHhhheecCCCCcchhhh-cccchhhhccCccccccCcccccccccccccccHHHHHHHHHHHHHhccCCcch
Confidence 22222110 0 0111111 111122111100 001123456788999999999999999
Q ss_pred HHHHHHHHHHHHHHHhHhhHHhhHhhhHHHHHHHHhccCCchhhhhHHHHHHHHHHHHHHhchhhhhh-hHHHHHHHHHH
Q 001442 481 VQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRD-DAKQVMEVLMS 559 (1076)
Q Consensus 481 v~~~al~ai~~l~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~g~~~~~~-~~~~ii~~l~~ 559 (1076)
+|-.+...+|.++...+.++ .+.++....+.+....++..+. .++=+++.++.. .-..| -++.+++.++.
T Consensus 357 VrWSaAKg~grvt~rlp~~L---ad~vi~svid~~~p~e~~~aWH---gacLaLAELA~r---GlLlps~l~dVvplI~k 427 (1133)
T KOG1943|consen 357 VRWSAAKGLGRVTSRLPPEL---ADQVIGSVIDLFNPAEDDSAWH---GACLALAELALR---GLLLPSLLEDVVPLILK 427 (1133)
T ss_pred hhHHHHHHHHHHHccCcHHH---HHHHHHHHHHhcCcCCchhHHH---HHHHHHHHHHhc---CCcchHHHHHHHHHHHH
Confidence 99999999999999988653 4455555555554444444443 344455555542 11222 24556665554
Q ss_pred Hhc-----CCCCCCChhhHHHHHHHHHHHHHhc-cCcccchhhhhHHHHHhccCCCCccccCCCCCccccCC-----CCc
Q 001442 560 LQG-----SQMETDDPTTSYMLQAWARLCKCLG-QDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDS-----DDD 628 (1076)
Q Consensus 560 ~~~-----~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~l~~i~~~ll~~~~~~~~~~~~~~d~d~~~~~~-----d~~ 628 (1076)
-.+ ........+|+.+.-.+=.+++++. .++.||+..+.+.++...-.|+++..+-.-...-.|.- -..
T Consensus 428 aL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAlqE~VGR~~n~p~ 507 (1133)
T KOG1943|consen 428 ALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAALQENVGRQGNFPH 507 (1133)
T ss_pred HhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHHHHHhccCCCCCC
Confidence 211 1122334567665443334777764 45899999999999988877776543211000000000 000
Q ss_pred ccchhhcCCceeeecchhHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHhhhc-ccccCCHHHHHHHHHHHHHHHHHHH
Q 001442 629 SMETITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPL-LKFYFHEEVRKAAVSAMPELLRSAK 707 (1076)
Q Consensus 629 ~~~~~~~~~~~~~v~~~~~~~k~~A~~~l~~i~~~~~~~~~p~l~~~~~~l~~~-l~~~~~~~vr~~a~~~l~~L~~~~~ 707 (1076)
+.+.+..-+ .++| -.+..+..-++... ..|..|.+.++..++.. +. +++..+|..++.+|..|....
T Consensus 508 Gi~Lis~~d-y~sV-----~~rsNcy~~l~~~i----a~~~~y~~~~f~~L~t~Kv~-HWd~~irelaa~aL~~Ls~~~- 575 (1133)
T KOG1943|consen 508 GISLISTID-YFSV-----TNRSNCYLDLCVSI----AEFSGYREPVFNHLLTKKVC-HWDVKIRELAAYALHKLSLTE- 575 (1133)
T ss_pred chhhhhhcc-hhhh-----hhhhhHHHHHhHHH----HhhhhHHHHHHHHHHhcccc-cccHHHHHHHHHHHHHHHHhh-
Confidence 000000000 0010 11122222222222 22566777777766543 44 368899999999998865432
Q ss_pred HHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHhCCCC--CHHHHHHHHHHHHHHHHHHH
Q 001442 708 LAIEKGLAPGRNESYVKQLSDFIIPALVEALHKEPDTEICASMLDSLNECIQISGPLL--DEGQVRSIVDEIKQVITASS 785 (1076)
Q Consensus 708 ~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~l~~l~~~i~~~g~~~--~~~~~~~~~~~l~~~l~~~~ 785 (1076)
.+.+.+..+|+++...-. .+...+-..+.+.++++..+...- .......-+..+...+....
T Consensus 576 ---------------pk~~a~~~L~~lld~~ls-~~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~~l~~ii~~~~ 639 (1133)
T KOG1943|consen 576 ---------------PKYLADYVLPPLLDSTLS-KDASMRHGVFLAAGEVIGALRKLEPVIKGLDENRIAGLLSIIPPIC 639 (1133)
T ss_pred ---------------HHhhcccchhhhhhhhcC-CChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhhhhhccHHH
Confidence 233344556666665432 456666666777777766543210 01111111111111111111
Q ss_pred HhHHHHHHhhcCCCCChHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhchhhhHHH-HHHhHhhhhcCCCCHHHHHHH
Q 001442 786 SRKRERAERAKAEDFDAEESELIKEENEQEEEVFDQVGEILGTLIKTFKAAFLPFFDE-LSSYLTPMWGKDKTAEERRIA 864 (1076)
Q Consensus 786 ~~~~~~~~~~~~ed~d~~~~~~~~e~~e~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~-l~~~l~~~l~~~~~~~~r~~a 864 (1076)
.+...+. .....+.+++..+..+.-....-+...+-. ..-.+...+ ...+ ..|..+
T Consensus 640 ~~~~~rg---------------------~~~lmr~~~~~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l-~~~n-~i~~~a 696 (1133)
T KOG1943|consen 640 DRYFYRG---------------------QGTLMRQATLKFIEQLSLSKDRLFQDFVIENWQMLLAQNL-TLPN-QIRDAA 696 (1133)
T ss_pred HHHhccc---------------------hHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhh-cchH-HHHHHH
Confidence 1110000 002234444444444433322211111111 111222222 1222 678888
Q ss_pred HHHHHHHHHHhhhhhHhhHHhHHHHHHhhccCC-ChhHHhhhhHHHHHHHhhcCCCchHHHHHHH-HHHHHhhcCCCCCC
Q 001442 865 ICIFDDVAEQCREAALKYYETYLPFLLEACNDE-NQDVRQAAVYGLGVCAEFGGSVVKPLVGEAL-SRLNVVIRHPNALQ 942 (1076)
Q Consensus 865 l~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~-~~~vr~~a~~~lg~l~~~~~~~~~~~~~~il-~~L~~~l~~~~~~~ 942 (1076)
+..+++++...-..-...-..++...+..+.++ +..+|+.-..++|.+.... +.-++.+.+ ..+.... |.
T Consensus 697 v~av~~l~s~y~~~d~~~~~~li~~~ls~~~~~~~~~~r~g~~lal~~lp~~~---i~~~~q~~lc~~~l~~~--p~--- 768 (1133)
T KOG1943|consen 697 VSAVSDLVSTYVKADEGEEAPLITRYLSRLTKCSEERIRRGLILALGVLPSEL---IHRHLQEKLCKLVLELL--PS--- 768 (1133)
T ss_pred HHHHHHHHHHHHhcCchhhhHHHHHHHHHhcCchHHHHHHHHHHHHccCcHHh---hchHHHHHHHHHHhccC--cc---
Confidence 888888876542211111224667777777766 7788887777777766432 222333333 3332222 11
Q ss_pred hhhhhHHHHHHHHHHHHHhhcCCCC---CHhhHHHHHHhhC
Q 001442 943 PENLMAYDNAVSALGKICQFHRDSI---DAAQVVPAWLNCL 980 (1076)
Q Consensus 943 ~~~~~~~~na~~al~~i~~~~~~~~---~~~~~l~~~l~~l 980 (1076)
+.....|.+.+.++.+++....... ...++...+++.|
T Consensus 769 d~~a~aR~~~V~al~~v~~~~~~~~~~~~~~k~~e~LL~~l 809 (1133)
T KOG1943|consen 769 DAWAEARQQNVKALAHVCKTVTSLLFSESIEKFRETLLNAL 809 (1133)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 1256889999999999998776333 3678888888887
No 47
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=99.14 E-value=2.3e-07 Score=107.35 Aligned_cols=529 Identities=15% Similarity=0.181 Sum_probs=328.3
Q ss_pred cchhhHHHHHHHHHHHHHhcccCCCCcchhHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhCCcchHhHHhhhHHHH
Q 001442 115 ESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLIINFIQCLTSSADRDRFQDLLPLM 194 (1076)
Q Consensus 115 ~~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~~~~~~~r~~al~~L~~l~~~~~~~l~~~~~~~~~~~l~p~~ 194 (1076)
+..-.|+...+.-++.+..+.+....-.-+++.+...+......+|+.++..+..+.. .+.. ...+..++|.+
T Consensus 131 ~~~dev~~~~a~~~~~~~~~v~~~~~~~~ll~~le~l~~~eet~vr~k~ve~l~~v~~----~~~~---~~~~~~lv~l~ 203 (759)
T KOG0211|consen 131 DDEDEVLLDLAEQLGTFLPDVGGPEYAHMLLPPLELLATVEETGVREKAVESLLKVAV----GLPK---EKLREHLVPLL 203 (759)
T ss_pred cchhHHHHHHHHHhcccchhccchhHHHHhhHHHHhhhHHHHHHHHHHHHHHHHHHHH----hcCh---HHHHHHHHHHH
Confidence 3466788888888888877665422223455666666666667889888888865532 2211 11122233322
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHccCc-HHHHHhHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHhhcccchh
Q 001442 195 MRTLTESLNNGNEATAQEALELLIELAGTEP-RFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGM 273 (1076)
Q Consensus 195 l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~-~~~~~~l~~l~~~l~~~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~ 273 (1076)
-. .....-...+..++.++...+-..+ ..++..+..++. +++. +....+|..+-.-++.++.. -+.
T Consensus 204 ~~----l~~~d~~~sr~sacglf~~~~~~~~~~~vk~elr~~~~---~lc~--d~~~~Vr~~~a~~l~~~a~~---~~~- 270 (759)
T KOG0211|consen 204 KR----LATGDWFQSRLSACGLFGKLYVSLPDDAVKRELRPIVQ---SLCQ--DDTPMVRRAVASNLGNIAKV---LES- 270 (759)
T ss_pred HH----ccchhhhhcchhhhhhhHHhccCCChHHHHHHHHHHHH---hhcc--ccchhhHHHHHhhhHHHHHH---HHH-
Confidence 21 1112122245567777777665555 555554544444 3342 34677888877777777663 111
Q ss_pred hccchhhHHHHHHHHHHhhcCCCCCccccCCCCCCcccCCCCchhhHHHHHHHHHHHcCCC-cchHHHHHHHHHhhcCCC
Q 001442 274 MRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGN-TIVPVASEQLPAYLAAPE 352 (1076)
Q Consensus 274 ~~~~~~~~~~l~~~l~~~l~~~~dd~~~~~~~~e~~d~~e~~~~~~a~~~l~~l~~~~~~~-~~~~~l~~~l~~~l~~~~ 352 (1076)
..-.+.+.|...+... |+.++++.+|...+..+...+..+ .....+.+.+.+...+.+
T Consensus 271 ----~~~~s~v~~~~~~L~~-----------------DdqdsVr~~a~~~~~~l~~l~~~~~d~~~~~~~~l~~~~~d~~ 329 (759)
T KOG0211|consen 271 ----EIVKSEVLPTLIQLLR-----------------DDQDSVREAAVESLVSLLDLLDDDDDVVKSLTESLVQAVEDGS 329 (759)
T ss_pred ----HHHHhhccHHHhhhhh-----------------cchhhHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHhcChh
Confidence 1111223333333321 113457888888988888887655 555566777777788899
Q ss_pred hhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhH-HhhhhhhhHHHHHhhc
Q 001442 353 WQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDL-QNQFHPQVLPALAGAM 431 (1076)
Q Consensus 353 ~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~-~~~~~~~ll~~l~~~l 431 (1076)
|.+|+........+....+. ...-.+..+.....++|....+|.+...-...++..+.... ..-..+.++|.+-...
T Consensus 330 ~~v~~~~~~~~~~L~~~~~~--~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv 407 (759)
T KOG0211|consen 330 WRVSYMVADKFSELSSAVGP--SATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLV 407 (759)
T ss_pred HHHHHHHhhhhhhHHHHhcc--ccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHH
Confidence 99999877776666654443 12223456777888899999999999888888887765211 0123455678888888
Q ss_pred cCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHhHh-hHHhhHhhhHHH
Q 001442 432 DDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQE-HFQKYYDAVMPF 510 (1076)
Q Consensus 432 ~~~~~~~v~~~a~~aL~~l~~~~~~~~l~~~l~~ll~~l~~~l~~~~~~v~~~al~ai~~l~~~~~~-~~~~~~~~i~~~ 510 (1076)
.| ++..|+.+.+.....+...++.+ .-.+.+.|.+...+++..+.||...+.-+..+-...+. ...-+-+..+|.
T Consensus 408 ~d-~~~~vr~a~a~~~~~~~p~~~k~---~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~ 483 (759)
T KOG0211|consen 408 LD-NALHVRSALASVITGLSPILPKE---RTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPA 483 (759)
T ss_pred hc-ccchHHHHHhccccccCccCCcC---cCccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhh
Confidence 88 88999887777666665555522 23445667777888888899998888766444333221 233455667777
Q ss_pred HHHHHhccCCchhhhhHHHHHHHHHHHHHHhchhhhhhhHHH-HHHHHHHHhcCCCCCCChhhHHHHHHHHHHHHHhccC
Q 001442 511 LKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQ-VMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQD 589 (1076)
Q Consensus 511 L~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~g~~~~~~~~~~-ii~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 589 (1076)
+...-. +..+..|.+.++.+...+...|.+.|.+-+.. ++.++.+ ....++..+...+..++..+|..
T Consensus 484 i~el~~----d~~wRvr~ail~~ip~la~q~~~~~~~~~~~~l~~~~l~d-------~v~~Ir~~aa~~l~~l~~~~G~~ 552 (759)
T KOG0211|consen 484 IVELAE----DLLWRVRLAILEYIPQLALQLGVEFFDEKLAELLRTWLPD-------HVYSIREAAARNLPALVETFGSE 552 (759)
T ss_pred hhhhcc----chhHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHhhhhh-------hHHHHHHHHHHHhHHHHHHhCcc
Confidence 766532 22577888889999999888885444443222 2222211 23457888888899999999944
Q ss_pred cccchhhhhHHHHHhccCCCCccccCCCCCccccCCCCcccchhhcCCceeeecchhHHHHHHHHHHHHHHHHHhhhccc
Q 001442 590 FLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFF 669 (1076)
Q Consensus 590 ~~~~l~~i~~~ll~~~~~~~~~~~~~~d~d~~~~~~d~~~~~~~~~~~~~~~v~~~~~~~k~~A~~~l~~i~~~~~~~~~ 669 (1076)
. +...+++.++.....+ .+.. |.+.+.++..++..+|..+
T Consensus 553 w--~~~~~i~k~L~~~~q~------------------------------~y~~-------R~t~l~si~~la~v~g~ei- 592 (759)
T KOG0211|consen 553 W--ARLEEIPKLLAMDLQD------------------------------NYLV-------RMTTLFSIHELAEVLGQEI- 592 (759)
T ss_pred h--hHHHhhHHHHHHhcCc------------------------------ccch-------hhHHHHHHHHHHHHhccHH-
Confidence 3 3456667766555211 1122 2344556778888877765
Q ss_pred ccHHHHHHHhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHccCCcHHHHHH
Q 001442 670 PWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVEALHKEPDTEICAS 749 (1076)
Q Consensus 670 p~l~~~~~~l~~~l~~~~~~~vr~~a~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ 749 (1076)
+.+.+++.+..+..|. .++||-.+++.+..+...... ...+..+-++...+.++.+.+++..
T Consensus 593 -~~~~Llp~~~~l~~D~-vanVR~nvak~L~~i~~~L~~----------------~~~~~~v~pll~~L~~d~~~dvr~~ 654 (759)
T KOG0211|consen 593 -TCEDLLPVFLDLVKDP-VANVRINVAKHLPKILKLLDE----------------SVRDEEVLPLLETLSSDQELDVRYR 654 (759)
T ss_pred -HHHHHhHHHHHhccCC-chhhhhhHHHHHHHHHhhcch----------------HHHHHHHHHHHHHhccCcccchhHH
Confidence 3566777777777764 899999999999988765421 2222333445556666888888877
Q ss_pred HHHHHHHHHH
Q 001442 750 MLDSLNECIQ 759 (1076)
Q Consensus 750 ~l~~l~~~i~ 759 (1076)
+..++..+..
T Consensus 655 a~~a~~~i~l 664 (759)
T KOG0211|consen 655 AILAFGSIEL 664 (759)
T ss_pred HHHHHHHHHH
Confidence 7777665543
No 48
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.14 E-value=2.5e-07 Score=106.15 Aligned_cols=392 Identities=17% Similarity=0.236 Sum_probs=256.7
Q ss_pred HHHHHccCCCHHHHHHHHHHHHHhcccCCCCcccCCCHhHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhcccCCC-
Q 001442 61 LAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPEN- 139 (1076)
Q Consensus 61 L~~il~~~~~~~~R~~a~v~Lk~~i~~~~~~~w~~l~~~~~~~lk~~Ll~~l~~~~~~~vr~~~~~~i~~ia~~~~~~~- 139 (1076)
++..+.++ +.+.-..++-+|++.+.... +......++..|...|. .+++.||..++..++.++++.-..-
T Consensus 43 lf~~L~~~-~~e~v~~~~~iL~~~l~~~~-------~~~l~~~~~~~L~~gL~-h~~~~Vr~l~l~~l~~~~~~~~~~~~ 113 (503)
T PF10508_consen 43 LFDCLNTS-NREQVELICDILKRLLSALS-------PDSLLPQYQPFLQRGLT-HPSPKVRRLALKQLGRIARHSEGAAQ 113 (503)
T ss_pred HHHHHhhc-ChHHHHHHHHHHHHHHhccC-------HHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 55566654 44445677788999887531 22336677788888887 4789999999999999887542111
Q ss_pred --CcchhHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhCCcchHhHHhhhH-HHHHHHHHHHHhCCCHHHHHHHHHH
Q 001442 140 --GWPELLPFMFQCVSSDSVKLQESAFLIFAQLIINFIQCLTSSADRDRFQDLL-PLMMRTLTESLNNGNEATAQEALEL 216 (1076)
Q Consensus 140 --~w~~ll~~l~~~~~~~~~~~r~~al~~L~~l~~~~~~~l~~~~~~~~~~~l~-p~~l~~l~~~~~~~~~~~~~~~~~~ 216 (1076)
.-+++++.++.++.+++..+...|..+|..+... ...+..++ +..+..|...+...++.+|..++++
T Consensus 114 ~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~----------~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el 183 (503)
T PF10508_consen 114 LLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASH----------PEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYEL 183 (503)
T ss_pred HhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCC----------chhHHHHhCcchHHHHHHHHhccCHHHHHHHHHH
Confidence 2377999999999999999999999999777321 11111121 1225555565666678899999999
Q ss_pred HHHHHccCcHHHHHhHH-HHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHhhcccchhhccchhhHH--HHHHHHHHhhc
Q 001442 217 LIELAGTEPRFLRRQLV-DVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFIN--RLFAILMSMLL 293 (1076)
Q Consensus 217 l~~l~~~~~~~~~~~l~-~l~~~l~~~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~--~l~~~l~~~l~ 293 (1076)
+..++...++.+..... .+++.++..+.+ .|.-++..+++++..+++. +.. ..|+. .+++.+...+.
T Consensus 184 ~v~i~~~S~~~~~~~~~sgll~~ll~eL~~--dDiLvqlnalell~~La~~----~~g----~~yL~~~gi~~~L~~~l~ 253 (503)
T PF10508_consen 184 LVEIASHSPEAAEAVVNSGLLDLLLKELDS--DDILVQLNALELLSELAET----PHG----LQYLEQQGIFDKLSNLLQ 253 (503)
T ss_pred HHHHHhcCHHHHHHHHhccHHHHHHHHhcC--ccHHHHHHHHHHHHHHHcC----hhH----HHHHHhCCHHHHHHHHHh
Confidence 99999888777654433 588888887754 3566899999999999983 221 23333 37777777776
Q ss_pred CCCCCccccCCCCCCcccCCCCchhh-HHHHHHHHHHHcCCCc---chHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhh
Q 001442 294 DIEDDPLWHSAETEDEDAGESSNYSV-GQECLDRLAIALGGNT---IVPVASEQLPAYLAAPEWQKHHAALIALAQIAEG 369 (1076)
Q Consensus 294 ~~~dd~~~~~~~~e~~d~~e~~~~~~-a~~~l~~l~~~~~~~~---~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~ 369 (1076)
+.++|+.+ ...+-. ....++.++..-+ .. .+|.++..+..++.+.|...+.+|+.++|.++..
T Consensus 254 ~~~~dp~~------------~~~~l~g~~~f~g~la~~~~-~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst 320 (503)
T PF10508_consen 254 DSEEDPRL------------SSLLLPGRMKFFGNLARVSP-QEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGST 320 (503)
T ss_pred ccccCCcc------------cchhhhhHHHHHHHHHhcCh-HHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCC
Confidence 55443210 111211 2255666666422 22 3577777777888899999999999999999865
Q ss_pred cHH--HH----HHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhch-------hHHhhhh----hhhHH-HHHhhc
Q 001442 370 CAK--VM----VKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGP-------DLQNQFH----PQVLP-ALAGAM 431 (1076)
Q Consensus 370 ~~~--~~----~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~-------~~~~~~~----~~ll~-~l~~~l 431 (1076)
... .+ .+.++.++..+..........+|-+++.+++.+.....+ .+...++ ..-.. .++..+
T Consensus 321 ~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~ 400 (503)
T PF10508_consen 321 VEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLL 400 (503)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHh
Confidence 442 22 134566777777777888888999999999999654332 1111111 11111 556667
Q ss_pred cCCCChhHHHHHHHHHHHhhhcCCc-ccccCchHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHh
Q 001442 432 DDFQNPRVQAHAASAVLNFSENCTP-EILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSS 496 (1076)
Q Consensus 432 ~~~~~~~v~~~a~~aL~~l~~~~~~-~~l~~~l~~ll~~l~~~l~~~~~~v~~~al~ai~~l~~~~ 496 (1076)
+. |-+++|.++...|..++..-.. ..+ --.+.++..++.--...+...++.=..++..++...
T Consensus 401 ~q-PF~elr~a~~~~l~~l~~~~Wg~~~i-~~~~gfie~lldr~~E~~K~~ke~K~~ii~~l~~~~ 464 (503)
T PF10508_consen 401 KQ-PFPELRCAAYRLLQALAAQPWGQREI-CSSPGFIEYLLDRSTETTKEGKEAKYDIIKALAKSS 464 (503)
T ss_pred cC-CchHHHHHHHHHHHHHhcCHHHHHHH-HhCccHHhhhcCCCCCCCHHHHHHHHHHHHHHHhcc
Confidence 77 8899999999999999866321 111 112344444444444455666666667777766543
No 49
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=99.11 E-value=2.9e-08 Score=107.29 Aligned_cols=255 Identities=17% Similarity=0.208 Sum_probs=162.2
Q ss_pred HhHHhhhHHHHHHHHHHHHhCC-------C-------HHHHHHHHHHHHHHHccCcHHHHHhHHHHHHHHHHHhcCC---
Q 001442 184 RDRFQDLLPLMMRTLTESLNNG-------N-------EATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAE--- 246 (1076)
Q Consensus 184 ~~~~~~l~p~~l~~l~~~~~~~-------~-------~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~l~~~~~~~--- 246 (1076)
+..|.+.+..+|+.+...+.-+ + +.+...+|+++...++.+.+.+.++++.+++..++++..-
T Consensus 73 Pe~fed~l~~wm~~f~~~L~~~~p~l~~~d~~e~~~l~kvK~~i~~~~~ly~~kY~e~f~~~l~~fv~~vw~lL~~~~~~ 152 (370)
T PF08506_consen 73 PEFFEDNLSEWMEIFHKYLTYPNPALEEDDDDEPGLLEKVKAWICENLNLYAEKYEEEFEPFLPTFVQAVWNLLTKISQQ 152 (370)
T ss_dssp -HHHHHTHHHHHHHHHHHHH--SGGG-TT-SSS--HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHTC--SS
T ss_pred cHHHHHHHHHHHHHHHHHHcCCCcccCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 3445555556666554444311 1 2356678899999999999999999999999888876432
Q ss_pred CcchhHHHHHHHHHHHHHHhhcccchhhccchhhHHHHHH-HHHHhhcCCCCC-ccccCCCCC-----CcccCCCCchhh
Q 001442 247 SLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFA-ILMSMLLDIEDD-PLWHSAETE-----DEDAGESSNYSV 319 (1076)
Q Consensus 247 ~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~l~~-~l~~~l~~~~dd-~~~~~~~~e-----~~d~~e~~~~~~ 319 (1076)
...+.+...|+.|+.++++..... ..+. .++++..++. +++..|.-.++| ..|..++.| -|..|..+.+.+
T Consensus 153 ~~~D~lv~~al~FL~~v~~~~~~~-~lf~-~~~~L~~Iie~VI~Pnl~~~e~D~ElfEddP~EYIrrd~e~sd~~TrR~A 230 (370)
T PF08506_consen 153 PKYDILVSKALQFLSSVAESPHHK-NLFE-NKPHLQQIIEKVIFPNLCLREEDEELFEDDPEEYIRRDLEGSDSDTRRRA 230 (370)
T ss_dssp GGGHHHHHHHHHHHHHHHTSHHHH-TTT--SHHHHHHHHHHTHHHHHS--HHHHHHHHHSHHHHHHHHSCSS---SHHHH
T ss_pred ccccHHHHHHHHHHHHHHcchhHH-HHhC-CHHHHHHHHHHhccCccCCCHHHHHHHccCHHHHHHhhccccccCCcHHH
Confidence 234567788999999988732111 1111 2456666665 445555544322 234333221 111234567889
Q ss_pred HHHHHHHHHHHcCCCcchHHHHHHHHHhhc------CCChhHHHHHHHHHHHHHhhcHH------------HHHHhHH-H
Q 001442 320 GQECLDRLAIALGGNTIVPVASEQLPAYLA------APEWQKHHAALIALAQIAEGCAK------------VMVKNLE-Q 380 (1076)
Q Consensus 320 a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~------~~~~~~r~aal~~l~~l~~~~~~------------~~~~~l~-~ 380 (1076)
|...+..+++..+ +.+.+.+..++...++ +.+|+.+.+|+..++.++..... .+...+. .
T Consensus 231 A~dfl~~L~~~~~-~~v~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~ 309 (370)
T PF08506_consen 231 ACDFLRSLCKKFE-KQVTSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVDFFSQH 309 (370)
T ss_dssp HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHHH
T ss_pred HHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHHHHHHH
Confidence 9999999999886 6777777777777665 56899999999999999864421 1222222 2
Q ss_pred HHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHH
Q 001442 381 VLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAV 447 (1076)
Q Consensus 381 i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~aL 447 (1076)
|+|.+. .-.+.+|.+|..|++.+..|-..+++ +.+..++|.+.+.|.+ ++..|+..|+.++
T Consensus 310 v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~----~~l~~~~~~l~~~L~~-~~~vv~tyAA~~i 370 (370)
T PF08506_consen 310 VLPELQ-PDVNSHPILKADAIKFLYTFRNQLPK----EQLLQIFPLLVNHLQS-SSYVVHTYAAIAI 370 (370)
T ss_dssp TCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-H----HHHHHHHHHHHHHTTS-S-HHHHHHHHHHH
T ss_pred hHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCH----HHHHHHHHHHHHHhCC-CCcchhhhhhhhC
Confidence 234443 22367899999999999999887654 5678899999999999 8888888887664
No 50
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=99.08 E-value=3.6e-05 Score=90.30 Aligned_cols=234 Identities=12% Similarity=0.073 Sum_probs=148.7
Q ss_pred HHHHHHHHHHHHHHhhhchhhhHHHHHHhHhhhhcCCCCHH-HHHHHHHHHHHHHHHhhhhhHhhHHhHHHHHHhhccCC
Q 001442 819 FDQVGEILGTLIKTFKAAFLPFFDELSSYLTPMWGKDKTAE-ERRIAICIFDDVAEQCREAALKYYETYLPFLLEACNDE 897 (1076)
Q Consensus 819 ~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~-~r~~al~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~ 897 (1076)
+.++--.+..+++.+|+.+...+..+..++..-+....+.. .-...+.++..+...++..+.+ +-+.+|.+..+.++.
T Consensus 750 rrgael~L~~l~~~fg~sl~~klp~l~~~L~~~L~~~~~~~d~~~~s~~vf~s~~~~m~s~l~~-~~~~l~~l~~~~~s~ 828 (1549)
T KOG0392|consen 750 RRGAELFLKILSKMFGGSLAAKLPHLWDFLLKALSGLIDGNDEFLSSFEVFNSLAPLMHSFLHP-LGSLLPRLFFFVRSI 828 (1549)
T ss_pred hhhHHHHHHHHHHHhhHHHHHhcchHHHHHHHhhhccCCCCcchhhhHHHHHHHHHhhhhhhhh-hhhhhhHHHHhcccc
Confidence 45666778999999998775555555555555443322222 3445567777777777777776 667789999999999
Q ss_pred ChhHHhhhhHHHHHHHhhcCCCchHHHHHHHHHHHHhhcCCCCCChhhhhHHHHHHHHHHHHHhhcCCCC--CHhhHHHH
Q 001442 898 NQDVRQAAVYGLGVCAEFGGSVVKPLVGEALSRLNVVIRHPNALQPENLMAYDNAVSALGKICQFHRDSI--DAAQVVPA 975 (1076)
Q Consensus 898 ~~~vr~~a~~~lg~l~~~~~~~~~~~~~~il~~L~~~l~~~~~~~~~~~~~~~na~~al~~i~~~~~~~~--~~~~~l~~ 975 (1076)
+..+|.+|+.|+|.++..+.- +....++..+..++..-+ ...=|..|...++.+......-+ +..-+++.
T Consensus 829 ~~a~r~~~ar~i~~~~k~~~~---e~m~~v~~~~~~ll~~~~-----~~~~r~~a~e~~~~l~~~l~~~l~~~~~Llv~p 900 (1549)
T KOG0392|consen 829 HIAVRYAAARCIGTMFKSATR---ETMATVINGFLPLLGDLD-----KFVRRQGADELIELLDAVLMVGLVPYNPLLVVP 900 (1549)
T ss_pred hHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhhccchh-----hHhhhhhHHHHHHHHHHhhcccccccceeehhh
Confidence 999999999999999987653 233444555555444321 22234444444444444332222 35678888
Q ss_pred HHhhCCCCCcHHHHHHHHHHHHHHHhhcCCcccCcCcCchhhH-H-------HHHHHHhcCCCCCCHHHHHHHHHHHHHH
Q 001442 976 WLNCLPIKGDLIEAKIVHEQLCSMVERSDSDLLGPNHQYLPKI-V-------SVFAEILCGKDLATEQTLSRIVNLLKQL 1047 (1076)
Q Consensus 976 ~l~~lp~~~d~~e~~~~~~~l~~li~~~~~~~~~~~~~~l~~i-~-------~~~~~~l~~~~~~~~~~~~~~~~~l~~l 1047 (1076)
++..|....| .....+.+++..++..-+-+--.+++..+++- + .++.+.++..+.+...+...|..-|+.|
T Consensus 901 llr~msd~~d-~vR~aat~~fa~lip~~~le~g~~~p~gls~eLl~~ke~erkFLeqlldpski~~y~Ip~pI~a~LRkY 979 (1549)
T KOG0392|consen 901 LLRRMSDQID-SVREAATKVFAKLIPLLPLEAGIPDPTGLSKELLASKEEERKFLEQLLDPSKIPEYKIPVPISAKLRKY 979 (1549)
T ss_pred hhcccccchH-HHHHHHHHHHHHHhcccccccCCCCCccccHHHHHhHHHHHHHHHHhcCcccCCccccccchhHHHHHH
Confidence 9888865433 33555666676776433222212223345442 2 2445556666666667888888999999
Q ss_pred HhhCChhhHHHHHhcCC
Q 001442 1048 QQTLPPATLASTWSSLQ 1064 (1076)
Q Consensus 1048 ~~~~~~~~~~~~~~~l~ 1064 (1076)
++. |.+|-+++.++.
T Consensus 980 QqE--GVnWLaFLnky~ 994 (1549)
T KOG0392|consen 980 QQE--GVNWLAFLNKYK 994 (1549)
T ss_pred HHh--ccHHHHHHHHhc
Confidence 988 889999998753
No 51
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.07 E-value=9.8e-09 Score=102.02 Aligned_cols=348 Identities=16% Similarity=0.198 Sum_probs=203.0
Q ss_pred CCHHHHHHHHHHHHHhcccCCCCcccCCCHhHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhcccCCCC---cchhH
Q 001442 69 PHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENG---WPELL 145 (1076)
Q Consensus 69 ~~~~~R~~a~v~Lk~~i~~~~~~~w~~l~~~~~~~lk~~Ll~~l~~~~~~~vr~~~~~~i~~ia~~~~~~~~---w~~ll 145 (1076)
.+-+....|..-+|+.+++. .-+.+.+-....+..++.+.+........+..++-++..|+........ =...+
T Consensus 83 dDie~q~qav~kFR~~LS~E---~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AV 159 (526)
T COG5064 83 DDIEQQLQAVYKFRKLLSKE---TSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAV 159 (526)
T ss_pred hHHHHHHHHHHHHHHHhccc---cCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCch
Confidence 44455555666677777764 2345566666677777777775444556677778888877764322111 13466
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhCCcchHhHHhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccCc
Q 001442 146 PFMFQCVSSDSVKLQESAFLIFAQLIINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEP 225 (1076)
Q Consensus 146 ~~l~~~~~~~~~~~r~~al~~L~~l~~~~~~~l~~~~~~~~~~~l~p~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~ 225 (1076)
|.+++++.+++..+|+-+.++|+.+. -..
T Consensus 160 PlfiqlL~s~~~~V~eQavWALGNiA--------------------------------------------------GDS- 188 (526)
T COG5064 160 PLFIQLLSSTEDDVREQAVWALGNIA--------------------------------------------------GDS- 188 (526)
T ss_pred HHHHHHHcCchHHHHHHHHHHhcccc--------------------------------------------------CCc-
Confidence 77777777777788888888876652 100
Q ss_pred HHHHHhHH--HHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHhhcccchhhccchhhHHHHHHHHHHhhcCCCCCccccC
Q 001442 226 RFLRRQLV--DVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHS 303 (1076)
Q Consensus 226 ~~~~~~l~--~l~~~l~~~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~dd~~~~~ 303 (1076)
.-++.|+- ..++.++.++.....+-.+-..+.-.++.+++-+.-.| ...-+++.+|.+.+.+-..+.
T Consensus 189 ~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P-----~w~~isqalpiL~KLiys~D~------ 257 (526)
T COG5064 189 EGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPP-----DWSNISQALPILAKLIYSRDP------ 257 (526)
T ss_pred hhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCC-----chHHHHHHHHHHHHHHhhcCH------
Confidence 00011100 11111222211111122222333344555554211111 112345566666554422110
Q ss_pred CCCCCcccCCCCchhhHHHHHHHHHHHcCCCcchH-----HHHHHHHHhhcCCChhHHHHHHHHHHHHHhhcHHHHHHhH
Q 001442 304 AETEDEDAGESSNYSVGQECLDRLAIALGGNTIVP-----VASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNL 378 (1076)
Q Consensus 304 ~~~e~~d~~e~~~~~~a~~~l~~l~~~~~~~~~~~-----~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l 378 (1076)
....-|.+++..++..- .+-+. .+.+.+.+.+.+++-++..-++..+|.+..|....-.-.+
T Consensus 258 -----------evlvDA~WAiSYlsDg~--~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI 324 (526)
T COG5064 258 -----------EVLVDACWAISYLSDGP--NEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVII 324 (526)
T ss_pred -----------HHHHHHHHHHHHhccCc--HHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehhe
Confidence 01222344444443211 11111 1234566778888888888999999999887653211111
Q ss_pred H-HHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCC--
Q 001442 379 E-QVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCT-- 455 (1076)
Q Consensus 379 ~-~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~aL~~l~~~~~-- 455 (1076)
. ..++++...|.++...+|.-|||+++.+.-.-...++.-.-..++|.|++.|.. .+..++..||||+.+...+..
T Consensus 325 ~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~-ae~k~kKEACWAisNatsgg~~~ 403 (526)
T COG5064 325 NCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSS-AEYKIKKEACWAISNATSGGLNR 403 (526)
T ss_pred ecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHH-HHHHHHHHHHHHHHhhhccccCC
Confidence 1 345677777899999999999999999976655555434456789999999987 778899999999999887643
Q ss_pred cccccCch--HHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHh
Q 001442 456 PEILTPYL--DGIVSKLLVLLQNGKQMVQEGALTALASVADSS 496 (1076)
Q Consensus 456 ~~~l~~~l--~~ll~~l~~~l~~~~~~v~~~al~ai~~l~~~~ 496 (1076)
++.+ .|+ ...+..|..+|.-.+.++-+.++.|+..+...-
T Consensus 404 PD~i-ryLv~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk~G 445 (526)
T COG5064 404 PDII-RYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILKVG 445 (526)
T ss_pred chHH-HHHHHccchhHHHHHHhccCccchhhhHHHHHHHHhhh
Confidence 2322 232 245667778888777777788899988877643
No 52
>PRK09687 putative lyase; Provisional
Probab=99.06 E-value=2.8e-08 Score=103.81 Aligned_cols=254 Identities=19% Similarity=0.239 Sum_probs=174.4
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHccCcHHHHHhHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHhhcccchhh
Q 001442 195 MRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMM 274 (1076)
Q Consensus 195 l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~ 274 (1076)
++.|...+.+.+..+|..+...|..+-. +.++..+...+. +.+..+|..+...|..+... +.
T Consensus 25 ~~~L~~~L~d~d~~vR~~A~~aL~~~~~----------~~~~~~l~~ll~--~~d~~vR~~A~~aLg~lg~~----~~-- 86 (280)
T PRK09687 25 DDELFRLLDDHNSLKRISSIRVLQLRGG----------QDVFRLAIELCS--SKNPIERDIGADILSQLGMA----KR-- 86 (280)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcCc----------chHHHHHHHHHh--CCCHHHHHHHHHHHHhcCCC----cc--
Confidence 3445555678899999999999887642 334444555443 34788999999998887541 10
Q ss_pred ccchhhHHHHHHHHHHhhcCCCCCccccCCCCCCcccCCCCchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhcCCChh
Q 001442 275 RKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQ 354 (1076)
Q Consensus 275 ~~~~~~~~~l~~~l~~~l~~~~dd~~~~~~~~e~~d~~e~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~ 354 (1076)
-....++.+...+.. |+ +..++..+..+|+.+.... ....+.+++.+...+.+++|.
T Consensus 87 -----~~~~a~~~L~~l~~~---D~-------------d~~VR~~A~~aLG~~~~~~--~~~~~~a~~~l~~~~~D~~~~ 143 (280)
T PRK09687 87 -----CQDNVFNILNNLALE---DK-------------SACVRASAINATGHRCKKN--PLYSPKIVEQSQITAFDKSTN 143 (280)
T ss_pred -----chHHHHHHHHHHHhc---CC-------------CHHHHHHHHHHHhcccccc--cccchHHHHHHHHHhhCCCHH
Confidence 023455555544321 11 2235667777777764321 122355666677778889999
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCC
Q 001442 355 KHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDF 434 (1076)
Q Consensus 355 ~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~ 434 (1076)
+|.+++.+||.+.. +..++.|+..+.|+++.||..|..+||.+.. ..+.+.+.|+..+.|
T Consensus 144 VR~~a~~aLg~~~~----------~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~---------~~~~~~~~L~~~L~D- 203 (280)
T PRK09687 144 VRFAVAFALSVIND----------EAAIPLLINLLKDPNGDVRNWAAFALNSNKY---------DNPDIREAFVAMLQD- 203 (280)
T ss_pred HHHHHHHHHhccCC----------HHHHHHHHHHhcCCCHHHHHHHHHHHhcCCC---------CCHHHHHHHHHHhcC-
Confidence 99999999986532 2467888899999999999999999999821 123677888889999
Q ss_pred CChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHhHhhHHhhHhhhHHHHHHH
Q 001442 435 QNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAI 514 (1076)
Q Consensus 435 ~~~~v~~~a~~aL~~l~~~~~~~~l~~~l~~ll~~l~~~l~~~~~~v~~~al~ai~~l~~~~~~~~~~~~~~i~~~L~~~ 514 (1076)
+++.||..|..+|+.+- . +..++.|++.+++++ ++..++.++|.+.. +..+|.|...
T Consensus 204 ~~~~VR~~A~~aLg~~~----~-------~~av~~Li~~L~~~~--~~~~a~~ALg~ig~----------~~a~p~L~~l 260 (280)
T PRK09687 204 KNEEIRIEAIIGLALRK----D-------KRVLSVLIKELKKGT--VGDLIIEAAGELGD----------KTLLPVLDTL 260 (280)
T ss_pred CChHHHHHHHHHHHccC----C-------hhHHHHHHHHHcCCc--hHHHHHHHHHhcCC----------HhHHHHHHHH
Confidence 99999999999998742 1 256788888888866 56678888877654 2456777777
Q ss_pred HhccCCchhhhhHHHHHHHHH
Q 001442 515 LVNATDKSNRMLRAKSMECIS 535 (1076)
Q Consensus 515 l~~~~~~~~~~lr~~a~~~l~ 535 (1076)
+.... +..++.++++++.
T Consensus 261 ~~~~~---d~~v~~~a~~a~~ 278 (280)
T PRK09687 261 LYKFD---DNEIITKAIDKLK 278 (280)
T ss_pred HhhCC---ChhHHHHHHHHHh
Confidence 65322 3456667776654
No 53
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=99.05 E-value=1.9e-09 Score=90.96 Aligned_cols=95 Identities=25% Similarity=0.348 Sum_probs=86.5
Q ss_pred hHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccC
Q 001442 354 QKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDD 433 (1076)
Q Consensus 354 ~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~ 433 (1076)
+.|++++.+|++++.+++..+.++++.|++.++..+.|++++||..||.++..+++..++.+ -.+++.+++.+.+.+.|
T Consensus 1 n~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~-l~~f~~IF~~L~kl~~D 79 (97)
T PF12755_consen 1 NYRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEI-LPYFNEIFDALCKLSAD 79 (97)
T ss_pred CchhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcC
Confidence 36999999999999999998999999999999999999999999999999999999998888 46999999999999999
Q ss_pred CCChhHHHHHHHHHHHhh
Q 001442 434 FQNPRVQAHAASAVLNFS 451 (1076)
Q Consensus 434 ~~~~~v~~~a~~aL~~l~ 451 (1076)
++++||.+| ..|.+++
T Consensus 80 -~d~~Vr~~a-~~Ld~ll 95 (97)
T PF12755_consen 80 -PDENVRSAA-ELLDRLL 95 (97)
T ss_pred -CchhHHHHH-HHHHHHh
Confidence 999998776 5555554
No 54
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.04 E-value=8.5e-07 Score=101.79 Aligned_cols=311 Identities=15% Similarity=0.189 Sum_probs=205.2
Q ss_pred HHHhhcCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhh
Q 001442 344 LPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQV 423 (1076)
Q Consensus 344 l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l 423 (1076)
+-.++++.+...-..++.+|..+...... ....+++.+.+..+|.++++.||.-+++.++++..+-......-.-..+
T Consensus 43 lf~~L~~~~~e~v~~~~~iL~~~l~~~~~--~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l 120 (503)
T PF10508_consen 43 LFDCLNTSNREQVELICDILKRLLSALSP--DSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNEL 120 (503)
T ss_pred HHHHHhhcChHHHHHHHHHHHHHHhccCH--HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccH
Confidence 33455555555555666667766654321 1226778899999999999999999999999998765433322234679
Q ss_pred HHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCc-hHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHhHhhHHh
Q 001442 424 LPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPY-LDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQK 502 (1076)
Q Consensus 424 l~~l~~~l~~~~~~~v~~~a~~aL~~l~~~~~~~~l~~~-l~~ll~~l~~~l~~~~~~v~~~al~ai~~l~~~~~~~~~~ 502 (1076)
++.++.++.+ ++..|...|..+|..++..-.. +... -+.++..|..++..++..+|-++++++..++....+.+.-
T Consensus 121 ~~~i~~~L~~-~d~~Va~~A~~~L~~l~~~~~~--~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~ 197 (503)
T PF10508_consen 121 LPLIIQCLRD-PDLSVAKAAIKALKKLASHPEG--LEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEA 197 (503)
T ss_pred HHHHHHHHcC-CcHHHHHHHHHHHHHHhCCchh--HHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 9999999999 9999999999999999865321 1111 1122788888888888889999999999998877665532
Q ss_pred hH-hhhHHHHHHHHhccCCchhhhhHHHHHHHHHHHHHHhchhhhhhhHH--HHHHHHHHHh-cCCCCC--CChhhHHHH
Q 001442 503 YY-DAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAK--QVMEVLMSLQ-GSQMET--DDPTTSYML 576 (1076)
Q Consensus 503 ~~-~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~g~~~~~~~~~--~ii~~l~~~~-~~~~~~--~~~~~~~~~ 576 (1076)
.. ..+++.+...+.+ ++..++..++++++.++..- + -..|+. .+++.+.++. +...++ ........+
T Consensus 198 ~~~sgll~~ll~eL~~----dDiLvqlnalell~~La~~~--~-g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~ 270 (503)
T PF10508_consen 198 VVNSGLLDLLLKELDS----DDILVQLNALELLSELAETP--H-GLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRM 270 (503)
T ss_pred HHhccHHHHHHHHhcC----ccHHHHHHHHHHHHHHHcCh--h-HHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHH
Confidence 22 2377777766543 45678889999999998721 1 223332 3556555533 221111 222445666
Q ss_pred HHHHHHHHHhccCcccchhhhhHHHHHhccCCCCccccCCCCCccccCCCCcccchhhcCCceeeecchhHHHHHHHHHH
Q 001442 577 QAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATACNM 656 (1076)
Q Consensus 577 ~~~~~l~~~~~~~~~~~l~~i~~~ll~~~~~~~~~~~~~~d~d~~~~~~d~~~~~~~~~~~~~~~v~~~~~~~k~~A~~~ 656 (1076)
.+++.++..-+..+..-.|.++..+++.+... | ...+..|+.+
T Consensus 271 ~f~g~la~~~~~~v~~~~p~~~~~l~~~~~s~--------------------d-----------------~~~~~~A~dt 313 (503)
T PF10508_consen 271 KFFGNLARVSPQEVLELYPAFLERLFSMLESQ--------------------D-----------------PTIREVAFDT 313 (503)
T ss_pred HHHHHHHhcChHHHHHHHHHHHHHHHHHhCCC--------------------C-----------------hhHHHHHHHH
Confidence 88888888655555555577777777655321 0 1235789999
Q ss_pred HHHHHHHhhh-c-c----cccHHHHHHHhhhcccccCCHHHHHHHHHHHHHHHH
Q 001442 657 LCCYADELKE-G-F----FPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLR 704 (1076)
Q Consensus 657 l~~i~~~~~~-~-~----~p~l~~~~~~l~~~l~~~~~~~vr~~a~~~l~~L~~ 704 (1076)
+|.++....+ . + .+-++.++..+...... ...++|..+..++..++.
T Consensus 314 lg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~-~~~~lk~r~l~al~~il~ 366 (503)
T PF10508_consen 314 LGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKS-GSTELKLRALHALASILT 366 (503)
T ss_pred HHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHHh
Confidence 9999865422 1 2 33445555555555443 256899999999998875
No 55
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.00 E-value=1.8e-07 Score=115.73 Aligned_cols=274 Identities=21% Similarity=0.250 Sum_probs=167.3
Q ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHhcccCCCCcccCCCHhHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhcccC
Q 001442 58 TLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILP 137 (1076)
Q Consensus 58 ~~~L~~il~~~~~~~~R~~a~v~Lk~~i~~~~~~~w~~l~~~~~~~lk~~Ll~~l~~~~~~~vr~~~~~~i~~ia~~~~~ 137 (1076)
+..|+..|. +.++.+|..|+..|...- +++ ..+.|.+.| .+++..||..++..++.++..
T Consensus 623 ~~~L~~~L~-D~d~~VR~~Av~~L~~~~-----------~~~----~~~~L~~aL-~D~d~~VR~~Aa~aL~~l~~~--- 682 (897)
T PRK13800 623 VAELAPYLA-DPDPGVRRTAVAVLTETT-----------PPG----FGPALVAAL-GDGAAAVRRAAAEGLRELVEV--- 682 (897)
T ss_pred HHHHHHHhc-CCCHHHHHHHHHHHhhhc-----------chh----HHHHHHHHH-cCCCHHHHHHHHHHHHHHHhc---
Confidence 356666664 677888888887777532 122 333445555 367888888887777766431
Q ss_pred CCCcchhHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhCCcchHhHHhhhHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 001442 138 ENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLIINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELL 217 (1076)
Q Consensus 138 ~~~w~~ll~~l~~~~~~~~~~~r~~al~~L~~l~~~~~~~l~~~~~~~~~~~l~p~~l~~l~~~~~~~~~~~~~~~~~~l 217 (1076)
++ -.+.+.+.+.++++.+|..++..|+.+- .. . .+ .+...+.++++.+|..+...|
T Consensus 683 ---~~-~~~~L~~~L~~~d~~VR~~A~~aL~~~~--------~~-~-------~~----~l~~~L~D~d~~VR~~Av~aL 738 (897)
T PRK13800 683 ---LP-PAPALRDHLGSPDPVVRAAALDVLRALR--------AG-D-------AA----LFAAALGDPDHRVRIEAVRAL 738 (897)
T ss_pred ---cC-chHHHHHHhcCCCHHHHHHHHHHHHhhc--------cC-C-------HH----HHHHHhcCCCHHHHHHHHHHH
Confidence 11 1245556667778888888887775531 00 0 01 223455678888888888887
Q ss_pred HHHHccCcHHHHHhHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHhhcccchhhccchhhHHHHHHHHHHhhcCCCC
Q 001442 218 IELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIED 297 (1076)
Q Consensus 218 ~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~d 297 (1076)
..+-. . +.++..+. +.+..+|..+.+.|..+... .+ ..++.+...+.+.
T Consensus 739 ~~~~~--~-----------~~l~~~l~--D~~~~VR~~aa~aL~~~~~~---~~-----------~~~~~L~~ll~D~-- 787 (897)
T PRK13800 739 VSVDD--V-----------ESVAGAAT--DENREVRIAVAKGLATLGAG---GA-----------PAGDAVRALTGDP-- 787 (897)
T ss_pred hcccC--c-----------HHHHHHhc--CCCHHHHHHHHHHHHHhccc---cc-----------hhHHHHHHHhcCC--
Confidence 76421 1 12233443 34678888888877776441 10 1133344433211
Q ss_pred CccccCCCCCCcccCCCCchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhcHHHHHHh
Q 001442 298 DPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKN 377 (1076)
Q Consensus 298 d~~~~~~~~e~~d~~e~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~ 377 (1076)
+..++..+...|..+ -. . +.+.+.+...+++++|.+|.+|+.+|+.+..
T Consensus 788 ---------------d~~VR~aA~~aLg~~---g~-~---~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~--------- 836 (897)
T PRK13800 788 ---------------DPLVRAAALAALAEL---GC-P---PDDVAAATAALRASAWQVRQGAARALAGAAA--------- 836 (897)
T ss_pred ---------------CHHHHHHHHHHHHhc---CC-c---chhHHHHHHHhcCCChHHHHHHHHHHHhccc---------
Confidence 112444444444433 21 1 1122345567788899999999999987642
Q ss_pred HHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHH
Q 001442 378 LEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLN 449 (1076)
Q Consensus 378 l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~aL~~ 449 (1076)
+..++.+...|+|+++.||..|.++|+.+. . -+...+.|...++| +++.||..|..+|..
T Consensus 837 -~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~--~--------~~~a~~~L~~al~D-~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 837 -DVAVPALVEALTDPHLDVRKAAVLALTRWP--G--------DPAARDALTTALTD-SDADVRAYARRALAH 896 (897)
T ss_pred -cchHHHHHHHhcCCCHHHHHHHHHHHhccC--C--------CHHHHHHHHHHHhC-CCHHHHHHHHHHHhh
Confidence 124577788889999999999999999861 1 12355666778888 889999999988763
No 56
>PRK09687 putative lyase; Provisional
Probab=98.99 E-value=1.8e-07 Score=97.84 Aligned_cols=254 Identities=15% Similarity=0.100 Sum_probs=172.2
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhCCcchHhHHhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccC
Q 001442 145 LPFMFQCVSSDSVKLQESAFLIFAQLIINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTE 224 (1076)
Q Consensus 145 l~~l~~~~~~~~~~~r~~al~~L~~l~~~~~~~l~~~~~~~~~~~l~p~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~ 224 (1076)
++.|...+.+++..+|..+...|+.+ .+ +.++..+...++++++.+|..+..+|..+....
T Consensus 25 ~~~L~~~L~d~d~~vR~~A~~aL~~~--------~~-----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~ 85 (280)
T PRK09687 25 DDELFRLLDDHNSLKRISSIRVLQLR--------GG-----------QDVFRLAIELCSSKNPIERDIGADILSQLGMAK 85 (280)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhc--------Cc-----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCc
Confidence 35566677889999999999998654 11 122333444557889999999999999986422
Q ss_pred cHHHHHhHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHhhcccchhhccchhhHHHHHHHHHHhhcCCCCCccccCC
Q 001442 225 PRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSA 304 (1076)
Q Consensus 225 ~~~~~~~l~~l~~~l~~~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~dd~~~~~~ 304 (1076)
.. ....++.+...+. .+.+..+|..|+..++.+... .+ .....++..+...+.+.
T Consensus 86 ~~-----~~~a~~~L~~l~~-~D~d~~VR~~A~~aLG~~~~~---~~-------~~~~~a~~~l~~~~~D~--------- 140 (280)
T PRK09687 86 RC-----QDNVFNILNNLAL-EDKSACVRASAINATGHRCKK---NP-------LYSPKIVEQSQITAFDK--------- 140 (280)
T ss_pred cc-----hHHHHHHHHHHHh-cCCCHHHHHHHHHHHhccccc---cc-------ccchHHHHHHHHHhhCC---------
Confidence 11 2344455554432 245788999999999887541 11 11223333333332211
Q ss_pred CCCCcccCCCCchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHH
Q 001442 305 ETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSM 384 (1076)
Q Consensus 305 ~~e~~d~~e~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~ 384 (1076)
++.++..+...|..+ +. +..++.+...+++++|.+|..|..+||.+..+. +.+++.
T Consensus 141 --------~~~VR~~a~~aLg~~----~~----~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~--------~~~~~~ 196 (280)
T PRK09687 141 --------STNVRFAVAFALSVI----ND----EAAIPLLINLLKDPNGDVRNWAAFALNSNKYDN--------PDIREA 196 (280)
T ss_pred --------CHHHHHHHHHHHhcc----CC----HHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCC--------HHHHHH
Confidence 223555555555332 22 345566667788999999999999999883322 246777
Q ss_pred HHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchH
Q 001442 385 VLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLD 464 (1076)
Q Consensus 385 l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~aL~~l~~~~~~~~l~~~l~ 464 (1076)
+...+.|+++.||..|.++||++.. +..+|.|++.+.+ ++ ++..++.+|+.+-. +
T Consensus 197 L~~~L~D~~~~VR~~A~~aLg~~~~-----------~~av~~Li~~L~~-~~--~~~~a~~ALg~ig~-----------~ 251 (280)
T PRK09687 197 FVAMLQDKNEEIRIEAIIGLALRKD-----------KRVLSVLIKELKK-GT--VGDLIIEAAGELGD-----------K 251 (280)
T ss_pred HHHHhcCCChHHHHHHHHHHHccCC-----------hhHHHHHHHHHcC-Cc--hHHHHHHHHHhcCC-----------H
Confidence 8888899999999999999998532 3688889999988 44 67788888887632 2
Q ss_pred HHHHHHHHHhh-cCchhHHHHHHHHHHH
Q 001442 465 GIVSKLLVLLQ-NGKQMVQEGALTALAS 491 (1076)
Q Consensus 465 ~ll~~l~~~l~-~~~~~v~~~al~ai~~ 491 (1076)
..+|.|..+++ +++..++..++.++..
T Consensus 252 ~a~p~L~~l~~~~~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 252 TLLPVLDTLLYKFDDNEIITKAIDKLKR 279 (280)
T ss_pred hHHHHHHHHHhhCCChhHHHHHHHHHhc
Confidence 46788888886 7788999988888753
No 57
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.94 E-value=2e-07 Score=115.25 Aligned_cols=272 Identities=17% Similarity=0.186 Sum_probs=178.3
Q ss_pred HHHHHHhhcchhhHHHHHHHHHHHHHhcccCCCCcchhHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhCCcchHhH
Q 001442 107 MLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLIINFIQCLTSSADRDR 186 (1076)
Q Consensus 107 ~Ll~~l~~~~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~~~~~~~r~~al~~L~~l~~~~~~~l~~~~~~~~ 186 (1076)
.|++.|. ++++.||+.++..++.+.. ++.++.|.+.+.++++.+|..++..|..+. ....
T Consensus 625 ~L~~~L~-D~d~~VR~~Av~~L~~~~~--------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~----~~~~------- 684 (897)
T PRK13800 625 ELAPYLA-DPDPGVRRTAVAVLTETTP--------PGFGPALVAALGDGAAAVRRAAAEGLRELV----EVLP------- 684 (897)
T ss_pred HHHHHhc-CCCHHHHHHHHHHHhhhcc--------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHH----hccC-------
Confidence 4455554 6788899888888875521 557788888888888888988888876542 1110
Q ss_pred HhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccCcHHHHHhHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHh
Q 001442 187 FQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEA 266 (1076)
Q Consensus 187 ~~~l~p~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~r~~al~~l~~l~~~ 266 (1076)
-. ..+...++++++.+|..+++.|..+....+ ..++..+. +.+..+|..|+..+..+-.
T Consensus 685 ---~~----~~L~~~L~~~d~~VR~~A~~aL~~~~~~~~-----------~~l~~~L~--D~d~~VR~~Av~aL~~~~~- 743 (897)
T PRK13800 685 ---PA----PALRDHLGSPDPVVRAAALDVLRALRAGDA-----------ALFAAALG--DPDHRVRIEAVRALVSVDD- 743 (897)
T ss_pred ---ch----HHHHHHhcCCCHHHHHHHHHHHHhhccCCH-----------HHHHHHhc--CCCHHHHHHHHHHHhcccC-
Confidence 01 123344556788888888888877532111 12333443 4467788888777665411
Q ss_pred hcccchhhccchhhHHHHHHHHHHhhcCCCCCccccCCCCCCcccCCCCchhhHHHHHHHHHHHcCCCcchHHHHHHHHH
Q 001442 267 RERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPA 346 (1076)
Q Consensus 267 ~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~dd~~~~~~~~e~~d~~e~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~ 346 (1076)
+ + .+...+. |+ +..++..+...|..+...-+ ...+.+..
T Consensus 744 ----~----------~----~l~~~l~----D~-------------~~~VR~~aa~aL~~~~~~~~------~~~~~L~~ 782 (897)
T PRK13800 744 ----V----------E----SVAGAAT----DE-------------NREVRIAVAKGLATLGAGGA------PAGDAVRA 782 (897)
T ss_pred ----c----------H----HHHHHhc----CC-------------CHHHHHHHHHHHHHhccccc------hhHHHHHH
Confidence 1 1 1122221 10 22356666666665543211 12444557
Q ss_pred hhcCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHH
Q 001442 347 YLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPA 426 (1076)
Q Consensus 347 ~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~ 426 (1076)
.+++++|.+|.+|+.+|+.+... +.+.+.+...+.|+++.||.+|+++|+.+.. +..++.
T Consensus 783 ll~D~d~~VR~aA~~aLg~~g~~---------~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-----------~~a~~~ 842 (897)
T PRK13800 783 LTGDPDPLVRAAALAALAELGCP---------PDDVAAATAALRASAWQVRQGAARALAGAAA-----------DVAVPA 842 (897)
T ss_pred HhcCCCHHHHHHHHHHHHhcCCc---------chhHHHHHHHhcCCChHHHHHHHHHHHhccc-----------cchHHH
Confidence 77888999999999999887432 1133456778899999999999999987541 245577
Q ss_pred HHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCchhHHHHHHHHHHH
Q 001442 427 LAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALAS 491 (1076)
Q Consensus 427 l~~~l~~~~~~~v~~~a~~aL~~l~~~~~~~~l~~~l~~ll~~l~~~l~~~~~~v~~~al~ai~~ 491 (1076)
|...|.| +++.||..|..+|..+ . --+...+.|...+++.+..||..+..+|+.
T Consensus 843 L~~~L~D-~~~~VR~~A~~aL~~~----~------~~~~a~~~L~~al~D~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 843 LVEALTD-PHLDVRKAAVLALTRW----P------GDPAARDALTTALTDSDADVRAYARRALAH 896 (897)
T ss_pred HHHHhcC-CCHHHHHHHHHHHhcc----C------CCHHHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 8888888 8999999999998885 1 013456777888899999999999888864
No 58
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=98.91 E-value=1.7e-08 Score=100.30 Aligned_cols=357 Identities=15% Similarity=0.178 Sum_probs=225.2
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhCCcc-hHhHHhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHcc
Q 001442 145 LPFMFQCVSSDSVKLQESAFLIFAQLIINFIQCLTSSA-DRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGT 223 (1076)
Q Consensus 145 l~~l~~~~~~~~~~~r~~al~~L~~l~~~~~~~l~~~~-~~~~~~~l~p~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~ 223 (1076)
+|.+.+.+-|.+...+..|..-+..+++. -..+. ....-...+|.+++.+.. ....-...++.++|..+++.
T Consensus 73 lp~lt~~l~SdDie~q~qav~kFR~~LS~----E~~PPIq~VIdaGvVpRfvefm~~---~q~~mlqfEAaWalTNiaSG 145 (526)
T COG5064 73 LPQLTQQLFSDDIEQQLQAVYKFRKLLSK----ETSPPIQPVIDAGVVPRFVEFMDE---IQRDMLQFEAAWALTNIASG 145 (526)
T ss_pred hHHHHHHHhhhHHHHHHHHHHHHHHHhcc----ccCCCchhHHhccccHHHHHHHHh---cchhHHHHHHHHHHhhhccC
Confidence 47777777777776666666555443211 00111 111223456666666532 22334456788888888765
Q ss_pred CcHHHHHhH-HHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHhhcccchhhccchhhH--HHHHHHHHHhhcCCCCCcc
Q 001442 224 EPRFLRRQL-VDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFI--NRLFAILMSMLLDIEDDPL 300 (1076)
Q Consensus 224 ~~~~~~~~l-~~l~~~l~~~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~--~~l~~~l~~~l~~~~dd~~ 300 (1076)
....-+-.+ ...++.+++.+. +.++++|.+++-.++.++.. . ..++. |+ ...+..++..+....-
T Consensus 146 tt~QTkvVvd~~AVPlfiqlL~--s~~~~V~eQavWALGNiAGD---S-~~~RD---~vL~~galeplL~ll~ss~~--- 213 (526)
T COG5064 146 TTQQTKVVVDAGAVPLFIQLLS--STEDDVREQAVWALGNIAGD---S-EGCRD---YVLQCGALEPLLGLLLSSAI--- 213 (526)
T ss_pred cccceEEEEeCCchHHHHHHHc--CchHHHHHHHHHHhccccCC---c-hhHHH---HHHhcCchHHHHHHHHhccc---
Confidence 432211111 134555566653 35788999999999999862 2 22222 22 1233344444431110
Q ss_pred ccCCCCCCcccCCCCchhhHHHHHHHHHHHcCCC---cchHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhcHHHHHHh
Q 001442 301 WHSAETEDEDAGESSNYSVGQECLDRLAIALGGN---TIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKN 377 (1076)
Q Consensus 301 ~~~~~~e~~d~~e~~~~~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~ 377 (1076)
..+..+.+.+.|..++..-.|. ..+...+|.+.+.+.+.|..+---|++++++++++..+.+...
T Consensus 214 ------------~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~av 281 (526)
T COG5064 214 ------------HISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAV 281 (526)
T ss_pred ------------hHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHH
Confidence 1123355778888888765433 3456678888899999999999999999999999988766555
Q ss_pred HH-HHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCc
Q 001442 378 LE-QVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTP 456 (1076)
Q Consensus 378 l~-~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~aL~~l~~~~~~ 456 (1076)
++ .+.+.++..|.+++..|+.-|+..+|.+...-....+.-.--..++.+...|.+ +...+|..|||.+.++......
T Consensus 282 ld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~-~ke~irKEaCWTiSNITAGnte 360 (526)
T COG5064 282 LDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSS-PKENIRKEACWTISNITAGNTE 360 (526)
T ss_pred HhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcC-hhhhhhhhhheeecccccCCHH
Confidence 54 345678889999999999999999999886432211111223566777777888 7779999999999999765443
Q ss_pred ccccCch-HHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHhH--hhHHhhH--hhhHHHHHHHHhccCCchhhhhHHHHH
Q 001442 457 EILTPYL-DGIVSKLLVLLQNGKQMVQEGALTALASVADSSQ--EHFQKYY--DAVMPFLKAILVNATDKSNRMLRAKSM 531 (1076)
Q Consensus 457 ~~l~~~l-~~ll~~l~~~l~~~~~~v~~~al~ai~~l~~~~~--~~~~~~~--~~i~~~L~~~l~~~~~~~~~~lr~~a~ 531 (1076)
. +...+ ..++|.|+.++...+..+|+.|+.+|+......- ++...|+ ..++..|..++.-.. ..+-..++
T Consensus 361 q-iqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~d----Nkiiev~L 435 (526)
T COG5064 361 Q-IQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVD----NKIIEVAL 435 (526)
T ss_pred H-HHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccC----ccchhhhH
Confidence 2 33223 2578899999999999999999999998765431 2444555 246667777665321 12334567
Q ss_pred HHHHHHH
Q 001442 532 ECISLVG 538 (1076)
Q Consensus 532 ~~l~~i~ 538 (1076)
+|+..+.
T Consensus 436 D~~eniL 442 (526)
T COG5064 436 DAIENIL 442 (526)
T ss_pred HHHHHHH
Confidence 7776664
No 59
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=98.89 E-value=2.8e-06 Score=95.60 Aligned_cols=366 Identities=15% Similarity=0.158 Sum_probs=225.1
Q ss_pred HHHHHHHHHHHHHhcccCCCCcchhHHHHHHhhcC-----CCHHHHHHHHHHHHHHHHHHHHhhCCcchHhHHhh--hHH
Q 001442 120 ISKKLCDTVSELASNILPENGWPELLPFMFQCVSS-----DSVKLQESAFLIFAQLIINFIQCLTSSADRDRFQD--LLP 192 (1076)
Q Consensus 120 vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~~-----~~~~~r~~al~~L~~l~~~~~~~l~~~~~~~~~~~--l~p 192 (1076)
-...+-.+++.++.. ..-|..+.+.+++.+.. .+....+..+.++..++......... .....|.. ++|
T Consensus 18 ~~~~~L~~l~~ls~~---~~i~~~~~~~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~~~~~~~~~-~~~~~y~~~~lv~ 93 (415)
T PF12460_consen 18 NYERILEALAALSTS---PQILETLSIRLLNKLSIVCQSESSSDYCHAILSTLQSLLEKKQEDKQF-EDNSWYFHRILVP 93 (415)
T ss_pred HHHHHHHHHHHHHCC---hhHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhccccccc-chHHHHHHhHHHH
Confidence 334455555655542 24577777766665532 24455666677776654433222101 12333333 788
Q ss_pred HHHHHHHHHHhCCC---HHHHHHHHHHHHHHHccCcHHHH-HhHHHHHHHHHHH-----hc-CCCcchhHHHHHHHHHHH
Q 001442 193 LMMRTLTESLNNGN---EATAQEALELLIELAGTEPRFLR-RQLVDVVGSMLQI-----AE-AESLEEGTRHLAIEFVIT 262 (1076)
Q Consensus 193 ~~l~~l~~~~~~~~---~~~~~~~~~~l~~l~~~~~~~~~-~~l~~l~~~l~~~-----~~-~~~~~~~~r~~al~~l~~ 262 (1076)
.+++.......... +.+...+..++..++...+..-. ..+..++..++.. .. ............+-.+..
T Consensus 94 ~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 173 (415)
T PF12460_consen 94 RLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQEILDELYSLFLSPKSFSPFQPSSSTISEQQSRLVILFSA 173 (415)
T ss_pred HHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccccccCCCCccccccccccccHHHHHHH
Confidence 88887766543322 44555555566655555443222 2233444433300 00 000000011112222333
Q ss_pred HHHhhcccchhhccchhhHHHHHHHHHHhhcCCCCCccccCCCCCCcccCCCCchhhHHHHHHHHHHHcCCCcchHHHHH
Q 001442 263 LAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASE 342 (1076)
Q Consensus 263 l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~dd~~~~~~~~e~~d~~e~~~~~~a~~~l~~l~~~~~~~~~~~~l~~ 342 (1076)
+... -.+.. .++ ....++..++.+.....+ ...+..+.+++..+...++....+..++.
T Consensus 174 il~~--l~~~~--~~~-~~~~ll~~l~~~~~~~~~----------------~~~~~~~~~~la~LvNK~~~~~~l~~~l~ 232 (415)
T PF12460_consen 174 ILCS--LRKDV--SLP-DLEELLQSLLNLALSSED----------------EFSRLAALQLLASLVNKWPDDDDLDEFLD 232 (415)
T ss_pred HHHc--CCccc--Ccc-CHHHHHHHHHHHHHcCCC----------------hHHHHHHHHHHHHHHcCCCChhhHHHHHH
Confidence 3321 01110 111 233455555544432211 12456778888888877654455555555
Q ss_pred HHHHhh-cCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhch--------
Q 001442 343 QLPAYL-AAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGP-------- 413 (1076)
Q Consensus 343 ~l~~~l-~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~-------- 413 (1076)
.+...+ ...+...|..++..+.+++++.---..+....++..++..+.| +.+...+..+++.+......
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a 310 (415)
T PF12460_consen 233 SLLQSISSSEDSELRPQALEILIWITKALVMRGHPLATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHA 310 (415)
T ss_pred HHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccc
Confidence 555545 4556778888899998888875321124455677778888877 77888899999988876321
Q ss_pred ----hHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCchhHHHHHHHHH
Q 001442 414 ----DLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTAL 489 (1076)
Q Consensus 414 ----~~~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~aL~~l~~~~~~~~l~~~l~~ll~~l~~~l~~~~~~v~~~al~ai 489 (1076)
-+...++..++|.+++..++ .+...+..-..||..++++.+.+.+.++++.++|.+++.+..++..++..++.++
T Consensus 311 ~vklLykQR~F~~~~p~L~~~~~~-~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL 389 (415)
T PF12460_consen 311 NVKLLYKQRFFTQVLPKLLEGFKE-ADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETL 389 (415)
T ss_pred hhhhHHhHHHHHHHHHHHHHHHhh-cChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 12235688899999999988 5556888889999999999999889999999999999999999999999999999
Q ss_pred HHHHHHhHhhHHhhHhhhHHHHHH
Q 001442 490 ASVADSSQEHFQKYYDAVMPFLKA 513 (1076)
Q Consensus 490 ~~l~~~~~~~~~~~~~~i~~~L~~ 513 (1076)
..+....++.+.+|++.++|.|.+
T Consensus 390 ~~~l~~~~~~i~~hl~sLI~~LL~ 413 (415)
T PF12460_consen 390 KMILEEAPELISEHLSSLIPRLLK 413 (415)
T ss_pred HHHHHcCHHHHHHHHHHHHHHHHh
Confidence 999999888899999999998875
No 60
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=98.87 E-value=1.4e-07 Score=97.55 Aligned_cols=189 Identities=21% Similarity=0.327 Sum_probs=137.3
Q ss_pred HHHHHhhcCCChhHHHHHHHHHHHHHhhc-----HHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHH
Q 001442 342 EQLPAYLAAPEWQKHHAALIALAQIAEGC-----AKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQ 416 (1076)
Q Consensus 342 ~~l~~~l~~~~~~~r~aal~~l~~l~~~~-----~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~ 416 (1076)
..+.+.-.+.+|..|..|+..|..+..+. .+.+...+..++..+...+.|....|...|+.+++.++..++..+
T Consensus 10 ~~l~~~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~- 88 (228)
T PF12348_consen 10 AALEKKESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHF- 88 (228)
T ss_dssp TTHHHHHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGG-
T ss_pred HHHhccCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhH-
Confidence 33434446789999999999999998876 233445566777899999999999999999999999999999988
Q ss_pred hhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHH-HHHHHHHhhcCchhHHHHHHHHHHHHHHH
Q 001442 417 NQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGI-VSKLLVLLQNGKQMVQEGALTALASVADS 495 (1076)
Q Consensus 417 ~~~~~~ll~~l~~~l~~~~~~~v~~~a~~aL~~l~~~~~~~~l~~~l~~l-l~~l~~~l~~~~~~v~~~al~ai~~l~~~ 495 (1076)
..+.+.++|.|++.+.+ ++..++..|..+|..+++.++ +.+.+ ++.+....++.++.+|..++.++..+...
T Consensus 89 ~~~~~~~l~~Ll~~~~~-~~~~i~~~a~~~L~~i~~~~~------~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~ 161 (228)
T PF12348_consen 89 EPYADILLPPLLKKLGD-SKKFIREAANNALDAIIESCS------YSPKILLEILSQGLKSKNPQVREECAEWLAIILEK 161 (228)
T ss_dssp HHHHHHHHHHHHHGGG----HHHHHHHHHHHHHHHTTS-------H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcc-ccHHHHHHHHHHHHHHHHHCC------cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 78999999999999999 888999999999999998765 22344 77788889999999999999999999988
Q ss_pred hH---hhHHh--hHhhhHHHHHHHHhccCCchhhhhHHHHHHHHHHHHHHhc
Q 001442 496 SQ---EHFQK--YYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVG 542 (1076)
Q Consensus 496 ~~---~~~~~--~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~g 542 (1076)
.+ ..+.. .++.+.+.+...+.+ .+..+|..+-+++..+...+|
T Consensus 162 ~~~~~~~l~~~~~~~~l~~~l~~~l~D----~~~~VR~~Ar~~~~~l~~~~~ 209 (228)
T PF12348_consen 162 WGSDSSVLQKSAFLKQLVKALVKLLSD----ADPEVREAARECLWALYSHFP 209 (228)
T ss_dssp -----GGG--HHHHHHHHHHHHHHHTS----S-HHHHHHHHHHHHHHHHHH-
T ss_pred ccchHhhhcccchHHHHHHHHHHHCCC----CCHHHHHHHHHHHHHHHHHCC
Confidence 88 34432 357788887777654 345689999999999988777
No 61
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.87 E-value=3.1e-05 Score=86.45 Aligned_cols=441 Identities=15% Similarity=0.205 Sum_probs=253.9
Q ss_pred HHHHHHHHHHHcCCCcchHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHH-HHHHHhhCCCCChhHHH
Q 001442 320 GQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQV-LSMVLNSFRDPHPRVRW 398 (1076)
Q Consensus 320 a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i-~~~l~~~l~d~~~~vr~ 398 (1076)
...++..+++.. . ...++|.+.+...+++..+|+-...-|-..++.-++ +.-+ +..+.+.|+|+|+.+|.
T Consensus 56 mKRIia~iA~G~---d-vS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpd-----LALLSIntfQk~L~DpN~LiRa 126 (968)
T KOG1060|consen 56 MKRIIALIAKGK---D-VSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPD-----LALLSINTFQKALKDPNQLIRA 126 (968)
T ss_pred HHHHHHHHhcCC---c-HHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCC-----ceeeeHHHHHhhhcCCcHHHHH
Confidence 334444455432 2 444566666677788889888777777777765443 1111 56778899999999999
Q ss_pred HHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCc
Q 001442 399 AAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGK 478 (1076)
Q Consensus 399 ~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~aL~~l~~~~~~~~l~~~l~~ll~~l~~~l~~~~ 478 (1076)
.|+.+++.+-- + -..+.++-++-++..| +.+.||..|..|+..+-.- ++ .+.++++..+-.+|.+.+
T Consensus 127 sALRvlSsIRv---p----~IaPI~llAIk~~~~D-~s~yVRk~AA~AIpKLYsL-d~----e~k~qL~e~I~~LLaD~s 193 (968)
T KOG1060|consen 127 SALRVLSSIRV---P----MIAPIMLLAIKKAVTD-PSPYVRKTAAHAIPKLYSL-DP----EQKDQLEEVIKKLLADRS 193 (968)
T ss_pred HHHHHHHhcch---h----hHHHHHHHHHHHHhcC-CcHHHHHHHHHhhHHHhcC-Ch----hhHHHHHHHHHHHhcCCC
Confidence 88888776531 1 1234455556667788 9999999999998887543 22 244588888999999999
Q ss_pred hhHHHHHHHHHHHHHHHhHhhHHhhHhhhHHHHHHHHhccCCchhhhhHHHHHHHHHHHHHH-hchh-------------
Q 001442 479 QMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMA-VGKD------------- 544 (1076)
Q Consensus 479 ~~v~~~al~ai~~l~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~i~~~-~g~~------------- 544 (1076)
+.|-..|+-+...++..-=+-+.++|..+...|.+. +.|. +..++..+..-++. +.+.
T Consensus 194 plVvgsAv~AF~evCPerldLIHknyrklC~ll~dv-------deWg-QvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~ 265 (968)
T KOG1060|consen 194 PLVVGSAVMAFEEVCPERLDLIHKNYRKLCRLLPDV-------DEWG-QVVLINMLTRYARHQLPDPTVVDSSLEDNGRS 265 (968)
T ss_pred CcchhHHHHHHHHhchhHHHHhhHHHHHHHhhccch-------hhhh-HHHHHHHHHHHHHhcCCCccccccccccCccc
Confidence 999888888777766543334456666665555432 1111 12233444433321 0000
Q ss_pred -----hh----hh-----hHHHHHHHHHHHhcCCCCCCChhhHHHHHHHHHHHHHhccCccc--chhhhhHHHHHhccCC
Q 001442 545 -----KF----RD-----DAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDFLP--YMSVVMPPLLQSAQLK 608 (1076)
Q Consensus 545 -----~~----~~-----~~~~ii~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~l~~i~~~ll~~~~~~ 608 (1076)
.. .| +..-+++....+..+. +-.+.-.+.+++-. ++| -...|+..|+..+...
T Consensus 266 ~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~---n~sVVmA~aql~y~--------lAP~~~~~~i~kaLvrLLrs~ 334 (968)
T KOG1060|consen 266 CNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSR---NPSVVMAVAQLFYH--------LAPKNQVTKIAKALVRLLRSN 334 (968)
T ss_pred ccccccccccCCCcccCccHHHHHHhccHHHhcC---CcHHHHHHHhHHHh--------hCCHHHHHHHHHHHHHHHhcC
Confidence 00 12 2223333222222110 01111111122211 222 2345666777666433
Q ss_pred CCccccCCCCCccccCCCCcccchhhcCCceeeecchhHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHhhhcccccCC
Q 001442 609 PDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFH 688 (1076)
Q Consensus 609 ~~~~~~~~d~d~~~~~~d~~~~~~~~~~~~~~~v~~~~~~~k~~A~~~l~~i~~~~~~~~~p~l~~~~~~l~~~l~~~~~ 688 (1076)
++ .|..-+..+..++...+..|.||++.++ +.. .| .
T Consensus 335 ~~--------------------------------------vqyvvL~nIa~~s~~~~~lF~P~lKsFf---v~s-sD--p 370 (968)
T KOG1060|consen 335 RE--------------------------------------VQYVVLQNIATISIKRPTLFEPHLKSFF---VRS-SD--P 370 (968)
T ss_pred Cc--------------------------------------chhhhHHHHHHHHhcchhhhhhhhhceE---eec-CC--H
Confidence 21 1223455577777788888999987652 111 11 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHhCCCCCHH
Q 001442 689 EEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVEALHKEPDTEICASMLDSLNECIQISGPLLDEG 768 (1076)
Q Consensus 689 ~~vr~~a~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~l~~l~~~i~~~g~~~~~~ 768 (1076)
..++..-...|.+|+... -+..|++.+...++.. +.+++..+.+++..|-+..+.
T Consensus 371 ~~vk~lKleiLs~La~es-------------------ni~~ILrE~q~YI~s~-d~~faa~aV~AiGrCA~~~~s----- 425 (968)
T KOG1060|consen 371 TQVKILKLEILSNLANES-------------------NISEILRELQTYIKSS-DRSFAAAAVKAIGRCASRIGS----- 425 (968)
T ss_pred HHHHHHHHHHHHHHhhhc-------------------cHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHhhCc-----
Confidence 344555555566555422 1334666666666654 447888999999999888774
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHhhcCCCCChHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHhH
Q 001442 769 QVRSIVDEIKQVITASSSRKRERAERAKAEDFDAEESELIKEENEQEEEVFDQVGEILGTLIKTFKAAFLPFFDELSSYL 848 (1076)
Q Consensus 769 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ed~d~~~~~~~~e~~e~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l 848 (1076)
.-..+++.++.++... ++.++..+.-.|..++...+..-..++..+.
T Consensus 426 v~~tCL~gLv~Llssh------------------------------de~Vv~eaV~vIk~Llq~~p~~h~~ii~~La--- 472 (968)
T KOG1060|consen 426 VTDTCLNGLVQLLSSH------------------------------DELVVAEAVVVIKRLLQKDPAEHLEILFQLA--- 472 (968)
T ss_pred hhhHHHHHHHHHHhcc------------------------------cchhHHHHHHHHHHHHhhChHHHHHHHHHHH---
Confidence 2233455555554432 1456666777788888777654333333322
Q ss_pred hhhhcCCCCHHHHHHHHHHHHHHHHHhhhhhHhhHHhHHHHHHhhccCCChhHHhhhhHH
Q 001442 849 TPMWGKDKTAEERRIAICIFDDVAEQCREAALKYYETYLPFLLEACNDENQDVRQAAVYG 908 (1076)
Q Consensus 849 ~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~vr~~a~~~ 908 (1076)
+.+..-.-+.-|...+.++|+.++..+. ..+.++..+.+.+.++.+.||--....
T Consensus 473 -~lldti~vp~ARA~IiWLige~~e~vpr----i~PDVLR~laksFs~E~~evKlQILnL 527 (968)
T KOG1060|consen 473 -RLLDTILVPAARAGIIWLIGEYCEIVPR----IAPDVLRKLAKSFSDEGDEVKLQILNL 527 (968)
T ss_pred -HHhhhhhhhhhhceeeeeehhhhhhcch----hchHHHHHHHHhhccccchhhHHHHHh
Confidence 2222223445677778888887776322 456777778888888888888655443
No 62
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=98.81 E-value=0.00019 Score=93.17 Aligned_cols=580 Identities=17% Similarity=0.246 Sum_probs=304.4
Q ss_pred hhHHHHHHHHHHHcCC--CcchHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChh
Q 001442 318 SVGQECLDRLAIALGG--NTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPR 395 (1076)
Q Consensus 318 ~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~ 395 (1076)
..+...+..++...+. ......-...+.+++.+..-..|.+|...+..++...+....+++..++..++..+.|+++.
T Consensus 111 ~~a~~~~~l~~~~~~~~~~~~v~~~~k~~~ew~~~~~~~~~~~a~~~~~~l~~~~P~~~~~~~~~~~~~i~~~~~~~~~~ 190 (2341)
T KOG0891|consen 111 ELAAKSLGLLAAPGKTKTAELVDFEVKRLIEWLGERQEYRRLAAVLIIKELADNVPTFFYPYVNKFFKNIFAALRDPKPA 190 (2341)
T ss_pred HHHHHHHHHHhccccccchHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhHhhcCcHHHHHHHHHHHHHHHHhccCCChh
Confidence 3455556555543321 13344444555556655556678999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhchhHH---hhhhhhhHHHHHhhccCCCChh------------------------HHHHHHHHHH
Q 001442 396 VRWAAINAIGQLSTDLGPDLQ---NQFHPQVLPALAGAMDDFQNPR------------------------VQAHAASAVL 448 (1076)
Q Consensus 396 vr~~a~~~l~~l~~~~~~~~~---~~~~~~ll~~l~~~l~~~~~~~------------------------v~~~a~~aL~ 448 (1076)
+|..|+.++.......+.... .+.+...+...-..+.. +... .+...+..-.
T Consensus 191 i~~~a~~al~~~~~~~~~~~~~~~~~~~~rcvd~~~~~l~~-~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 269 (2341)
T KOG0891|consen 191 IRLQACSALHAVLSSLAQREAKLKPQWYQRCVDEARHGLSS-DGVKIHASLLVYNELLRISDPFLEKYDSTCVRQAKGKL 269 (2341)
T ss_pred hhHHHHHHHHHHHhhhhhccchhhhHHHHHHHHhccccccc-hHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 999999999888766543320 01122222222222222 1100 1111110000
Q ss_pred H-------hhhcCCc--------ccccCchHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHhHhhHHhhHhhhHHHHHH
Q 001442 449 N-------FSENCTP--------EILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKA 513 (1076)
Q Consensus 449 ~-------l~~~~~~--------~~l~~~l~~ll~~l~~~l~~~~~~v~~~al~ai~~l~~~~~~~~~~~~~~i~~~L~~ 513 (1076)
. .+....+ ..-.-|+...|..++..+. .++..++..|+.++.+.+..+.+|...++..+..
T Consensus 270 lk~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~----~~~~~~~~~i~~ia~al~~~~~~~~~~~~~~i~~ 345 (2341)
T KOG0891|consen 270 LKSIVIRMTLSQILPLLAAFNPAKFQVKYLHTEMDHLLSILR----KEKTRAFVSIGEIAVALGSSMSPYLSNILDHIRQ 345 (2341)
T ss_pred hccccHHHHHHhccHHHhhhhhhhhHHHHHHHHHHHHHHhhh----ccchhHHHHHHHHHHHhhhhhhhhhcchhhhhhh
Confidence 0 0000000 0001244455555555544 2226788889999999999999888886666655
Q ss_pred HHhccCCchhhhhHHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHhcCCCCCCChhhHHHHHHHHHHHHHhccCcccc
Q 001442 514 ILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPY 593 (1076)
Q Consensus 514 ~l~~~~~~~~~~lr~~a~~~l~~i~~~~g~~~~~~~~~~ii~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 593 (1076)
.+....-..... -...+.|++..+.++++..|......++..+.. . ........++-.++..+++ .
T Consensus 346 ~~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~il~~~~~---~------~~~~~l~e~l~~l~~rl~~----l 411 (2341)
T KOG0891|consen 346 TLPTKDLARKKF-EKSVFTCIGLLASALGPADQKDLNKDILEQMFK---C------TLSDSLLERLFILSQRIPK----L 411 (2341)
T ss_pred cchhhhHHHHhc-chhHHHHHHHHhhccCHHHHHhHHHHHHHHHhc---C------CchHHHHHHHHHHHHhccc----h
Confidence 443311000000 123567888888888865443333444444332 1 1223344455556665543 3
Q ss_pred hhhhhHHHHHhcc----CC----CCc-cc----cCCCCCccccCCCCcccchhhcCCceeeecchhHHHHHHHHHHHHHH
Q 001442 594 MSVVMPPLLQSAQ----LK----PDV-TI----TSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATACNMLCCY 660 (1076)
Q Consensus 594 l~~i~~~ll~~~~----~~----~~~-~~----~~~d~d~~~~~~d~~~~~~~~~~~~~~~v~~~~~~~k~~A~~~l~~i 660 (1076)
.+.+.+.++...+ .. |+. .+ ...-. . ..+ -++ +. .+-+.|.++++.+
T Consensus 412 ~~~i~~rll~~~~~vl~~~a~~~~~~~~vl~~~~~p~~-~-~~~-~~~-------------~~----~~~~~a~~~l~~~ 471 (2341)
T KOG0891|consen 412 GQSIQDRLLNMTSQVLSGKAFIQPGQFTVLPKLAIPKA-I-LQK-TGD-------------ST----DDIQLAFKTLGGF 471 (2341)
T ss_pred hhHHHHHHHHHHHHHHhCccccCccccCccchhcccch-h-hhh-ccc-------------cc----HHHHHHHHHHhhh
Confidence 3444444444331 11 110 00 00000 0 000 000 00 1124577778777
Q ss_pred HHHhhhcccccHHHHHHHhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHcc
Q 001442 661 ADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVEALHK 740 (1076)
Q Consensus 661 ~~~~~~~~~p~l~~~~~~l~~~l~~~~~~~vr~~a~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~ 740 (1076)
.... .....++.++++.... ..++++|+.+..++..++.....+.++ .+..+ +.+..++..+......
T Consensus 472 ~~~~-~~~~~~~~~~~~~~~~----~~~~e~r~~~~l~~~~ll~~~~~~~~~------~~~~~-~~v~~vl~~ll~~aia 539 (2341)
T KOG0891|consen 472 KFSG-YSLTLFVQQCVDSYLE----ADDSEIRKNAALTCCELLKYDIICSQT------SPHAL-QVVKEVLSALLTVAIA 539 (2341)
T ss_pred hhhh-hhHHHHHHHHHHHHHh----cccHHHHHHHHHHHHHHHhhhhhhhcc------cchHH-HHHHHHHHHHHHHhcc
Confidence 5432 2233344444444433 237899999999988887765443221 11111 3455566666666677
Q ss_pred CCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcC-CCCCh----Hhh--hhhh--hh
Q 001442 741 EPDTEICASMLDSLNECIQISGPLLDEGQVRSIVDEIKQVITASSSRKRERAERAKA-EDFDA----EES--ELIK--EE 811 (1076)
Q Consensus 741 ~~~~~~~~~~l~~l~~~i~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~-ed~d~----~~~--~~~~--e~ 811 (1076)
+.++.++...+..+...+..- ...+..+...+..+. ...+.-+.......+. -+.++ +.. -.+. ++
T Consensus 540 ~~~~~i~~~v~~~l~~~~~~~--laQ~~~lr~~~~al~---~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~~~s~ 614 (2341)
T KOG0891|consen 540 DTDPDIRIRVLSSLNERFDAQ--LAQPDLLRLLFIALH---DENFAIQELATVIIGRLSSYNPAYVLPSLRKTLLELLTE 614 (2341)
T ss_pred CCCcchhhhHHhhhccchhhh--hcCchhHHHHHHHhh---hhhhhhHHhHHhhccccccccHHHHhHHHHHHHHHHhch
Confidence 777777776666655221110 000011110000000 0000000000000000 00000 000 0000 00
Q ss_pred hhhHH--HHHHHHHHHHHHHHHHhhhchhhhHHHHHHhHhhhhcCCCCHHHHHHHHHHHHHHHHHhhhhhHhhHHhHHHH
Q 001442 812 NEQEE--EVFDQVGEILGTLIKTFKAAFLPFFDELSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREAALKYYETYLPF 889 (1076)
Q Consensus 812 ~e~~~--~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~ll~~ 889 (1076)
.+... .+-...+..+..++........++.+.++-.+...+. +.+..+-..++.++++++...|.....+.+.+++.
T Consensus 615 l~~sg~~r~~~~~a~~~~~~i~~~~~~i~~~v~~~l~~~~~~~~-~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~~~~~~ 693 (2341)
T KOG0891|consen 615 LEFSGMARTKEESAKLLCELIISSPVLISPYVGPILLVLLPKLQ-DPSSGVEKAVLETIGELCAVGGEEMVKWVDELFSL 693 (2341)
T ss_pred hhhcchHHhHHHHHHHhhHHHHHHHHHHHhhcCchHHHHHHHHh-ccchhhHHHHHHHHHHHHHhccchhhhccchHHHH
Confidence 00000 1111223334445555555566777777777776663 44445666788999999999998877788888888
Q ss_pred HHhhccC-CChhHHhhhhHHHHHHHhhcCCCchHH--HHHHHHHHHHhhcCCCCCChhhhhHHHHHHHHHHHH
Q 001442 890 LLEACND-ENQDVRQAAVYGLGVCAEFGGSVVKPL--VGEALSRLNVVIRHPNALQPENLMAYDNAVSALGKI 959 (1076)
Q Consensus 890 l~~~l~~-~~~~vr~~a~~~lg~l~~~~~~~~~~~--~~~il~~L~~~l~~~~~~~~~~~~~~~na~~al~~i 959 (1076)
+.+.+.+ .+..-|+++.+++|.++...+-.+.|+ +|.++..+.+.+... ....+|..++..+|..
T Consensus 694 ~~~~l~~~s~~~rr~aslk~l~~l~s~~~~~v~p~~~~P~ll~~l~~~~~te-----~~~~ir~~~v~~~g~~ 761 (2341)
T KOG0891|consen 694 IIKMLQDQSSLGKRLAALKALGQLESSTGYVVDPYLDYPELLDILINILKTE-----QSSTIRREAIRLLGLL 761 (2341)
T ss_pred HHHHHHHhhhhhchhHHHHHhhhhhcccceEecccccChHHHHHHHHHHhHh-----hhhHHHHHHHHHhhhh
Confidence 8888886 467788888999999999988777665 688888888877643 2345666666666644
No 63
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.79 E-value=0.00018 Score=81.15 Aligned_cols=154 Identities=16% Similarity=0.274 Sum_probs=114.7
Q ss_pred HhhcCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHH
Q 001442 346 AYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLP 425 (1076)
Q Consensus 346 ~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~ 425 (1076)
+++.+++.-.++.++++..-+.....+ .+--+...+.+-|++++..|...|+.++|+++. + +..+.+.|
T Consensus 77 KLias~~f~dKRiGYLaamLlLdE~qd----vllLltNslknDL~s~nq~vVglAL~alg~i~s---~----Emardlap 145 (866)
T KOG1062|consen 77 KLIASDNFLDKRIGYLAAMLLLDERQD----LLLLLTNSLKNDLNSSNQYVVGLALCALGNICS---P----EMARDLAP 145 (866)
T ss_pred HHhcCCCchHHHHHHHHHHHHhccchH----HHHHHHHHHHhhccCCCeeehHHHHHHhhccCC---H----HHhHHhhH
Confidence 456788888888888877776654333 222355778888999999999999999988863 3 45678889
Q ss_pred HHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHhHhhHHhhHh
Q 001442 426 ALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYD 505 (1076)
Q Consensus 426 ~l~~~l~~~~~~~v~~~a~~aL~~l~~~~~~~~l~~~l~~ll~~l~~~l~~~~~~v~~~al~ai~~l~~~~~~~~~~~~~ 505 (1076)
.+-+.++. +++.+|..|.-|...+....+. ..+.+++...++|.+.+.-|....+..+-.++....+. ..||.
T Consensus 146 eVe~Ll~~-~~~~irKKA~Lca~r~irK~P~-----l~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~-l~~fr 218 (866)
T KOG1062|consen 146 EVERLLQH-RDPYIRKKAALCAVRFIRKVPD-----LVEHFVIAFRKLLCEKHHGVLIAGLHLITELCKISPDA-LSYFR 218 (866)
T ss_pred HHHHHHhC-CCHHHHHHHHHHHHHHHHcCch-----HHHHhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHH-HHHHH
Confidence 99999998 8999999999999999876542 24566777888888888777777777777777765543 34666
Q ss_pred hhHHHHHHHHhc
Q 001442 506 AVMPFLKAILVN 517 (1076)
Q Consensus 506 ~i~~~L~~~l~~ 517 (1076)
.+.+-+..++.+
T Consensus 219 ~l~~~lV~iLk~ 230 (866)
T KOG1062|consen 219 DLVPSLVKILKQ 230 (866)
T ss_pred HHHHHHHHHHHH
Confidence 677777666654
No 64
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.78 E-value=0.0016 Score=78.84 Aligned_cols=131 Identities=14% Similarity=0.123 Sum_probs=97.3
Q ss_pred HHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhc
Q 001442 397 RWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQN 476 (1076)
Q Consensus 397 r~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~aL~~l~~~~~~~~l~~~l~~ll~~l~~~l~~ 476 (1076)
+..+.+..-.++... .+ ...+...+..++..+.. +...+|..|..+|..+++.-+ ..+ -.+.+-..+..-+.+
T Consensus 794 ~~~a~li~~~la~~r--~f-~~sfD~yLk~Il~~l~e-~~ialRtkAlKclS~ive~Dp-~vL--~~~dvq~~Vh~R~~D 866 (1692)
T KOG1020|consen 794 DDDAKLIVFYLAHAR--SF-SQSFDPYLKLILSVLGE-NAIALRTKALKCLSMIVEADP-SVL--SRPDVQEAVHGRLND 866 (1692)
T ss_pred chhHHHHHHHHHhhh--HH-HHhhHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHhcCh-Hhh--cCHHHHHHHHHhhcc
Confidence 445555544444332 22 35567788888889988 889999999999999987643 222 345666777778888
Q ss_pred CchhHHHHHHHHHHHHHHHhHhhHHhhHhhhHHHHHHHHhccCCchhhhhHHHHHHHHHHHHHHhc
Q 001442 477 GKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVG 542 (1076)
Q Consensus 477 ~~~~v~~~al~ai~~l~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~g 542 (1076)
....||+.|+..+|..+-+.++...+||+.+...+.. ..-.+|.+++.-+..++...+
T Consensus 867 ssasVREAaldLvGrfvl~~~e~~~qyY~~i~erIlD--------tgvsVRKRvIKIlrdic~e~p 924 (1692)
T KOG1020|consen 867 SSASVREAALDLVGRFVLSIPELIFQYYDQIIERILD--------TGVSVRKRVIKILRDICEETP 924 (1692)
T ss_pred chhHHHHHHHHHHhhhhhccHHHHHHHHHHHHhhcCC--------CchhHHHHHHHHHHHHHHhCC
Confidence 8999999999999999999888888888887665432 234589999998888876543
No 65
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.71 E-value=1.4e-05 Score=89.06 Aligned_cols=406 Identities=16% Similarity=0.192 Sum_probs=253.9
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHc---cCCCHHHHHHHHHHHHHhcccCCCCcccCCCHhH
Q 001442 24 FETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQ---RSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHT 100 (1076)
Q Consensus 24 l~~lL~~~~s~d~~~r~~Ae~~L~~~~~~~p~~~~~~L~~il~---~~~~~~~R~~a~v~Lk~~i~~~~~~~w~~l~~~~ 100 (1076)
|.+++.++.+.|.+++|-..-.|-++.+.||+-- ..-+.-++ .++++.+|-.|.-.|-.+= -+.+.|-.
T Consensus 73 Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLA-LLSIntfQk~L~DpN~LiRasALRvlSsIR-------vp~IaPI~ 144 (968)
T KOG1060|consen 73 FPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLA-LLSINTFQKALKDPNQLIRASALRVLSSIR-------VPMIAPIM 144 (968)
T ss_pred HHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCce-eeeHHHHHhhhcCCcHHHHHHHHHHHHhcc-------hhhHHHHH
Confidence 4456667777788888888888877777677631 11111222 3677888877765544321 12233322
Q ss_pred HHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhcccCCCCcchhHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhC-
Q 001442 101 QSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLIINFIQCLT- 179 (1076)
Q Consensus 101 ~~~lk~~Ll~~l~~~~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~~~~~~~r~~al~~L~~l~~~~~~~l~- 179 (1076)
.-.||+ ..+|+.+-||+.+|++|-.+-+-+ + .+.++|+..+-.++.+.++.+...|+.++..++..=+..+.
T Consensus 145 llAIk~-----~~~D~s~yVRk~AA~AIpKLYsLd-~-e~k~qL~e~I~~LLaD~splVvgsAv~AF~evCPerldLIHk 217 (968)
T KOG1060|consen 145 LLAIKK-----AVTDPSPYVRKTAAHAIPKLYSLD-P-EQKDQLEEVIKKLLADRSPLVVGSAVMAFEEVCPERLDLIHK 217 (968)
T ss_pred HHHHHH-----HhcCCcHHHHHHHHHhhHHHhcCC-h-hhHHHHHHHHHHHhcCCCCcchhHHHHHHHHhchhHHHHhhH
Confidence 222222 235889999999999999886644 2 46668888888889999988888888888877322111110
Q ss_pred ---------------------------------Ccc-----------------------hHhHHhhhHHHHHHHHHHHHh
Q 001442 180 ---------------------------------SSA-----------------------DRDRFQDLLPLMMRTLTESLN 203 (1076)
Q Consensus 180 ---------------------------------~~~-----------------------~~~~~~~l~p~~l~~l~~~~~ 203 (1076)
++. .+-....=+..+++....+++
T Consensus 218 nyrklC~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~ 297 (968)
T KOG1060|consen 218 NYRKLCRLLPDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQ 297 (968)
T ss_pred HHHHHHhhccchhhhhHHHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHh
Confidence 110 000001123456777777788
Q ss_pred CCCHHHHHHHHHHHHHHHccCcHHHHHhHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHhhcccchhhccchhhHHH
Q 001442 204 NGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINR 283 (1076)
Q Consensus 204 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~ 283 (1076)
+.++.+...+++++..++-.. ....+++.++..+.. +.+++...+..+..++. ..|.+ +.||++.
T Consensus 298 S~n~sVVmA~aql~y~lAP~~------~~~~i~kaLvrLLrs---~~~vqyvvL~nIa~~s~---~~~~l---F~P~lKs 362 (968)
T KOG1060|consen 298 SRNPSVVMAVAQLFYHLAPKN------QVTKIAKALVRLLRS---NREVQYVVLQNIATISI---KRPTL---FEPHLKS 362 (968)
T ss_pred cCCcHHHHHHHhHHHhhCCHH------HHHHHHHHHHHHHhc---CCcchhhhHHHHHHHHh---cchhh---hhhhhhc
Confidence 888888889999888876422 345566777776643 34556666666676665 23332 3344433
Q ss_pred HHHHHHHhhcCCCCCccccCCCCCCcccCCCCchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhcCCChhHHHHHHHHH
Q 001442 284 LFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIAL 363 (1076)
Q Consensus 284 l~~~l~~~l~~~~dd~~~~~~~~e~~d~~e~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l 363 (1076)
.+- .. .|+ ......-.++|..|+. +.-+..+++.++.++++.+...--+++.++
T Consensus 363 Ffv-------~s-sDp--------------~~vk~lKleiLs~La~----esni~~ILrE~q~YI~s~d~~faa~aV~Ai 416 (968)
T KOG1060|consen 363 FFV-------RS-SDP--------------TQVKILKLEILSNLAN----ESNISEILRELQTYIKSSDRSFAAAAVKAI 416 (968)
T ss_pred eEe-------ec-CCH--------------HHHHHHHHHHHHHHhh----hccHHHHHHHHHHHHhcCchhHHHHHHHHH
Confidence 221 01 111 0011123345555553 445677888888899988876666777777
Q ss_pred HHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHH
Q 001442 364 AQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHA 443 (1076)
Q Consensus 364 ~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~v~~~a 443 (1076)
|..+.... ..-++.+..++..+.+.+..|-..+...+..+...-+. .+..++..+...+....-+..|...
T Consensus 417 GrCA~~~~----sv~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p~-----~h~~ii~~La~lldti~vp~ARA~I 487 (968)
T KOG1060|consen 417 GRCASRIG----SVTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDPA-----EHLEILFQLARLLDTILVPAARAGI 487 (968)
T ss_pred HHHHHhhC----chhhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhChH-----HHHHHHHHHHHHhhhhhhhhhhcee
Confidence 77665433 33445677777777777888888888888888754332 2334555666666543345666777
Q ss_pred HHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHhHhh
Q 001442 444 ASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEH 499 (1076)
Q Consensus 444 ~~aL~~l~~~~~~~~l~~~l~~ll~~l~~~l~~~~~~v~~~al~ai~~l~~~~~~~ 499 (1076)
.|.++..|+.. ....++++..+.+-+.+....+|-.++.....+-....++
T Consensus 488 iWLige~~e~v-----pri~PDVLR~laksFs~E~~evKlQILnL~aKLyl~~~~~ 538 (968)
T KOG1060|consen 488 IWLIGEYCEIV-----PRIAPDVLRKLAKSFSDEGDEVKLQILNLSAKLYLTNIDQ 538 (968)
T ss_pred eeeehhhhhhc-----chhchHHHHHHHHhhccccchhhHHHHHhhhhheEechhh
Confidence 77777777653 3356889999999999999999988888887776554444
No 66
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.71 E-value=6.8e-05 Score=84.34 Aligned_cols=393 Identities=16% Similarity=0.208 Sum_probs=233.5
Q ss_pred CCcchhHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhCCcchHhHHhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 001442 139 NGWPELLPFMFQCVSSDSVKLQESAFLIFAQLIINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLI 218 (1076)
Q Consensus 139 ~~w~~ll~~l~~~~~~~~~~~r~~al~~L~~l~~~~~~~l~~~~~~~~~~~l~p~~l~~l~~~~~~~~~~~~~~~~~~l~ 218 (1076)
.--+++.|.+-..+++.++.+|+-|..|...+... ..+++..++......+.+.+..+...++..+.
T Consensus 138 EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK-------------~P~l~e~f~~~~~~lL~ek~hGVL~~~l~l~~ 204 (866)
T KOG1062|consen 138 EMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRK-------------VPDLVEHFVIAFRKLLCEKHHGVLIAGLHLIT 204 (866)
T ss_pred HHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHc-------------CchHHHHhhHHHHHHHhhcCCceeeeHHHHHH
Confidence 35588999999999999999999999998666211 12234445555555666778888888999999
Q ss_pred HHHccCcHHHHHhHHHHHHHHHHHhcC----C---------CcchhHHHHHHHHHHHHHHhhcccchhhccchhhHHHHH
Q 001442 219 ELAGTEPRFLRRQLVDVVGSMLQIAEA----E---------SLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLF 285 (1076)
Q Consensus 219 ~l~~~~~~~~~~~l~~l~~~l~~~~~~----~---------~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~l~ 285 (1076)
++++..++.+. |+..+++.++.++.+ . -.++-+....+.++.-+.+. .+ .....+..++
T Consensus 205 e~c~~~~~~l~-~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~---d~----daSd~M~DiL 276 (866)
T KOG1062|consen 205 ELCKISPDALS-YFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQN---DA----DASDLMNDIL 276 (866)
T ss_pred HHHhcCHHHHH-HHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCC---Cc----cHHHHHHHHH
Confidence 99988665433 344455554444321 1 13455677777777766552 11 1111222222
Q ss_pred HHHHHhhcCCCCCccccCCCCCCcccCCCCchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhcCCChhHHHHHHHHHHH
Q 001442 286 AILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQ 365 (1076)
Q Consensus 286 ~~l~~~l~~~~dd~~~~~~~~e~~d~~e~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~ 365 (1076)
.. .....+.. -+.-..+-.+|+..+....+...+.......+..++.+.+-+.|+.|+..|..
T Consensus 277 aq---vatntdss--------------kN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r 339 (866)
T KOG1062|consen 277 AQ---VATNTDSS--------------KNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALNMLLR 339 (866)
T ss_pred HH---HHhccccc--------------ccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeehhhHHh
Confidence 22 22111100 00112345567777766655445666677888889999999999999999999
Q ss_pred HHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHH
Q 001442 366 IAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAAS 445 (1076)
Q Consensus 366 l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~ 445 (1076)
+...-+....+|- ..|+.+|+|+++.+|..|+...-.+.. ......++..++..|.. .++..+.....
T Consensus 340 ~V~~d~~avqrHr----~tIleCL~DpD~SIkrralELs~~lvn-------~~Nv~~mv~eLl~fL~~-~d~~~k~~~as 407 (866)
T KOG1062|consen 340 VVQQDPTAVQRHR----STILECLKDPDVSIKRRALELSYALVN-------ESNVRVMVKELLEFLES-SDEDFKADIAS 407 (866)
T ss_pred hhcCCcHHHHHHH----HHHHHHhcCCcHHHHHHHHHHHHHHhc-------cccHHHHHHHHHHHHHh-ccHHHHHHHHH
Confidence 8887666555554 456778899999999999998877764 34566788888888887 67889988888
Q ss_pred HHHHhhhcCCcccccCchHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHhHhhHHhhH-hhhHHHHHHHHhccCCchhh
Q 001442 446 AVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYY-DAVMPFLKAILVNATDKSNR 524 (1076)
Q Consensus 446 aL~~l~~~~~~~~l~~~l~~ll~~l~~~l~~~~~~v~~~al~ai~~l~~~~~~~~~~~~-~~i~~~L~~~l~~~~~~~~~ 524 (1076)
-+..+++.+.++. ..|++.++.. +......|+..+...+-.++.....+...|. ..++..+...... +.+..
T Consensus 408 ~I~~laEkfaP~k-~W~idtml~V----l~~aG~~V~~dv~~nll~LIa~~~~e~~~y~~~rLy~a~~~~~~~--~is~e 480 (866)
T KOG1062|consen 408 KIAELAEKFAPDK-RWHIDTMLKV----LKTAGDFVNDDVVNNLLRLIANAFQELHEYAVLRLYLALSEDTLL--DISQE 480 (866)
T ss_pred HHHHHHHhcCCcc-hhHHHHHHHH----HHhcccccchhhHHHHHHHHhcCCcchhhHHHHHHHHHHhhhhhh--hhhhh
Confidence 8888998887753 5566555444 4444444555555555554444322222221 1122222211000 11112
Q ss_pred hhHHHHHHHHHHHHHHh----chhhhhhh-HHHHHHHHHHHhcCCCCCCChhhHHHHHHHHHHHHHhccC
Q 001442 525 MLRAKSMECISLVGMAV----GKDKFRDD-AKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQD 589 (1076)
Q Consensus 525 ~lr~~a~~~l~~i~~~~----g~~~~~~~-~~~ii~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 589 (1076)
.+-..+.=|||.-+.-+ +.+.+..+ -.+++..+.+..... ..+...+.|++.++..+...++..
T Consensus 481 ~l~qVa~W~IGEYGdlll~~~~~~~p~~vtesdivd~l~~v~~~~-~s~~~tk~yal~Al~KLSsr~~s~ 549 (866)
T KOG1062|consen 481 PLLQVASWCIGEYGDLLLDGANEEEPIKVTESDIVDKLEKVLMSH-SSDSTTKGYALTALLKLSSRFHSS 549 (866)
T ss_pred hHHHHHHHHhhhhhHHhhcCccccCCCcCCHHHHHHHHHHHHHhc-cchHHHHHHHHHHHHHHHhhcccc
Confidence 23334555777665211 11111111 234555555533321 233457888888877776655543
No 67
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=98.69 E-value=3.3e-05 Score=87.05 Aligned_cols=369 Identities=16% Similarity=0.225 Sum_probs=226.1
Q ss_pred HHHHHHHHHHHHHHccCcHHHHHhHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHhhcccchhhccchhhHHH-HHH
Q 001442 208 ATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINR-LFA 286 (1076)
Q Consensus 208 ~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~-l~~ 286 (1076)
.....++.+|..++. .+..+..-...+++.+-....... +.+.....+..+..+.+...... .......|... ++|
T Consensus 17 ~~~~~~L~~l~~ls~-~~~i~~~~~~~ll~kl~~~~~~~~-~~~~~~~il~tl~~~~~~~~~~~-~~~~~~~y~~~~lv~ 93 (415)
T PF12460_consen 17 SNYERILEALAALST-SPQILETLSIRLLNKLSIVCQSES-SSDYCHAILSTLQSLLEKKQEDK-QFEDNSWYFHRILVP 93 (415)
T ss_pred hHHHHHHHHHHHHHC-ChhHHHHHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHHHHHhccccc-ccchHHHHHHhHHHH
Confidence 567778888888875 345555555666666666554332 55566667777777776421111 00122334443 777
Q ss_pred HHHHhhcCCCCCccccCCCCCCcccCCCCchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhc----------CCC---h
Q 001442 287 ILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLA----------APE---W 353 (1076)
Q Consensus 287 ~l~~~l~~~~dd~~~~~~~~e~~d~~e~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~----------~~~---~ 353 (1076)
.++.......... . + .+...-.....++..+...++.+.- ..++..+...+. ... +
T Consensus 94 ~l~~~~~~~~~~~--------~-~-~~~~~L~~~~~l~~~iv~~l~~~~q-~~~~~~~~~lf~~~~~~~~~~~~~~~~~~ 162 (415)
T PF12460_consen 94 RLFELALQASDQS--------S-D-LDDRVLELLSRLINLIVRSLSPEKQ-QEILDELYSLFLSPKSFSPFQPSSSTISE 162 (415)
T ss_pred HHHHHHHhhcccc--------c-c-cchHHHHHHHHHHHHHHHhCCHHHH-HHHHHHHHHHHccccccCCCCcccccccc
Confidence 7777665432210 0 0 0112334566677777777653221 122222222111 111 2
Q ss_pred hHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhC-CCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhc-
Q 001442 354 QKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSF-RDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAM- 431 (1076)
Q Consensus 354 ~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l-~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l- 431 (1076)
..+.......+.++.-.++...+....++..++... ...++..|.+++.+++.++..+.. .+.+..++..+...+
T Consensus 163 ~~~~~~~l~~~il~~l~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~---~~~l~~~l~~~~~~~~ 239 (415)
T PF12460_consen 163 QQSRLVILFSAILCSLRKDVSLPDLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPD---DDDLDEFLDSLLQSIS 239 (415)
T ss_pred ccccHHHHHHHHHHcCCcccCccCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCC---hhhHHHHHHHHHhhhc
Confidence 333333333333333222222234455666555543 445589999999999999877543 235566666666655
Q ss_pred cCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHhHh--------hH---
Q 001442 432 DDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQE--------HF--- 500 (1076)
Q Consensus 432 ~~~~~~~v~~~a~~aL~~l~~~~~~~~l~~~l~~ll~~l~~~l~~~~~~v~~~al~ai~~l~~~~~~--------~~--- 500 (1076)
.. ..+..+..+...+..+.+.+=.+ -.|....++..|+.++.+ +.+...+..+++.+..-..+ .+
T Consensus 240 ~~-~~~~~~~~~~~~~~Wi~KaLv~R-~~~~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklL 315 (415)
T PF12460_consen 240 SS-EDSELRPQALEILIWITKALVMR-GHPLATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLL 315 (415)
T ss_pred cc-CCcchhHHHHHHHHHHHHHHHHc-CCchHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhH
Confidence 22 44556667777776666654222 246667888889998887 55677788888877655221 11
Q ss_pred --HhhHhhhHHHHHHHHhccCCchhhhhHHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHhcCCCCCCChhhHHHHHH
Q 001442 501 --QKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQA 578 (1076)
Q Consensus 501 --~~~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~g~~~~~~~~~~ii~~l~~~~~~~~~~~~~~~~~~~~~ 578 (1076)
..+|..++|.|.+.+....+. .|...+.+++.+...++++.+.++++.+++++++-.+. .+..++..++.+
T Consensus 316 ykQR~F~~~~p~L~~~~~~~~~~----~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~---~~~~v~~s~L~t 388 (415)
T PF12460_consen 316 YKQRFFTQVLPKLLEGFKEADDE----IKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSL---PDADVLLSSLET 388 (415)
T ss_pred HhHHHHHHHHHHHHHHHhhcChh----hHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCC---CCHHHHHHHHHH
Confidence 357888999998887764332 56677889999999999989999999999999985432 233478888888
Q ss_pred HHHHHHHhccCcccchhhhhHHHHHh
Q 001442 579 WARLCKCLGQDFLPYMSVVMPPLLQS 604 (1076)
Q Consensus 579 ~~~l~~~~~~~~~~~l~~i~~~ll~~ 604 (1076)
+..+...-.+-+.+|+..++|.+++.
T Consensus 389 L~~~l~~~~~~i~~hl~sLI~~LL~l 414 (415)
T PF12460_consen 389 LKMILEEAPELISEHLSSLIPRLLKL 414 (415)
T ss_pred HHHHHHcCHHHHHHHHHHHHHHHHhc
Confidence 88888777777999999999999864
No 68
>PF03810 IBN_N: Importin-beta N-terminal domain; InterPro: IPR001494 Karyopherins are a group of proteins involved in transporting molecules through the pores of the nuclear envelope. Karyopherins, which may act as importins or exportins, are part of the Importin-beta super-family, which all share a similar three-dimensional structure. Members of the importin-beta (karyopherin-beta) family can bind and transport cargo by themselves, or can form heterodimers with importin-alpha. As part of a heterodimer, importin-beta mediates interactions with the pore complex, while importin-alpha acts as an adaptor protein to bind the nuclear localisation signal (NLS) on the cargo through the classical NLS import of proteins. Importin-beta is a helicoidal molecule constructed from 19 HEAT repeats. Many nuclear pore proteins contain FG sequence repeats that can bind to HEAT repeats within importins [, ], which is important for importin-beta mediated transport. Ran GTPase helps to control the unidirectional transfer of cargo. The cytoplasm contains primarily RanGDP and the nucleus RanGTP through the actions of RanGAP and RanGEF, respectively. In the nucleus, RanGTP binds to importin-beta within the importin/cargo complex, causing a conformational change in importin-beta that releases it from importin-alpha-bound cargo. As a result, the N-terminal auto-inhibitory region on importin-alpha is free to loop back and bind to the major NLS-binding site, causing the cargo to be released []. There are additional release factors as well. This entry represents the N-terminal domain of karyopherins that is important for the binding of the Ran protein []. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport; PDB: 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 1IBR_D 1QGR_A 3LWW_A 1F59_A 2Q5D_A ....
Probab=98.68 E-value=7.1e-08 Score=79.60 Aligned_cols=67 Identities=33% Similarity=0.565 Sum_probs=60.1
Q ss_pred HHHHHHHhhhcCchHHHHHHHHHHcc-CCCHHHHHHHHHHHHHhcccCCCCccc--------CCCHhHHHHHHHHHHHHH
Q 001442 42 AELLFNLCKQQDPDSLTLKLAHLLQR-SPHPEARAMAAVLLRKLLTRDDSFLWP--------RLSLHTQSSLKSMLLQSI 112 (1076)
Q Consensus 42 Ae~~L~~~~~~~p~~~~~~L~~il~~-~~~~~~R~~a~v~Lk~~i~~~~~~~w~--------~l~~~~~~~lk~~Ll~~l 112 (1076)
||++|+++++++|+ |...|++++.+ +.++.+|++|+++|||.|.++ |. .++++.|+.||+.|++.+
T Consensus 1 AE~~L~~~~~~~p~-~~~~l~~il~~~~~~~~~R~~A~i~LKn~I~~~----W~~~~~~~~~~~~~~~k~~Ik~~ll~~l 75 (77)
T PF03810_consen 1 AEQQLKQFQKQNPG-FWQYLLQILSSNSQDPEVRQLAAILLKNLIKKN----WSPSKQKGWSQLPEEEKEQIKSQLLQLL 75 (77)
T ss_dssp HHHHHHHHHHSCTC-HHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHS----GGHHHHHHHHGSSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhh-HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHc----CchhhccCCCCCCHHHHHHHHHHHHHHH
Confidence 79999999993366 67999999965 669999999999999999998 88 999999999999999987
Q ss_pred h
Q 001442 113 Q 113 (1076)
Q Consensus 113 ~ 113 (1076)
.
T Consensus 76 ~ 76 (77)
T PF03810_consen 76 L 76 (77)
T ss_dssp H
T ss_pred c
Confidence 5
No 69
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=98.66 E-value=6e-07 Score=92.71 Aligned_cols=187 Identities=19% Similarity=0.219 Sum_probs=125.7
Q ss_pred CCCchhhHHHHHHHHHHHcCCCcchHHHHHHHH-------HhhcCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHH
Q 001442 313 ESSNYSVGQECLDRLAIALGGNTIVPVASEQLP-------AYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMV 385 (1076)
Q Consensus 313 e~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~-------~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l 385 (1076)
+|+.+..|..-|..+.....+....+.+.+.+. ..+.+..-.+-..|+.+++.++...+..+.++++.++|.+
T Consensus 20 ~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~~L 99 (228)
T PF12348_consen 20 DWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILLPPL 99 (228)
T ss_dssp SHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 344555566666666655411233344434333 3445555677788999999999998888889999999999
Q ss_pred HhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhh-HHHHHhhccCCCChhHHHHHHHHHHHhhhcCC--cccccC-
Q 001442 386 LNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQV-LPALAGAMDDFQNPRVQAHAASAVLNFSENCT--PEILTP- 461 (1076)
Q Consensus 386 ~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l-l~~l~~~l~~~~~~~v~~~a~~aL~~l~~~~~--~~~l~~- 461 (1076)
+..+.|++..+|.+|..++..++...+ +.+.+ .+.+..+..+ +++.+|..++..+..+++..+ ...+..
T Consensus 100 l~~~~~~~~~i~~~a~~~L~~i~~~~~------~~~~~~~~~l~~~~~~-Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~ 172 (228)
T PF12348_consen 100 LKKLGDSKKFIREAANNALDAIIESCS------YSPKILLEILSQGLKS-KNPQVREECAEWLAIILEKWGSDSSVLQKS 172 (228)
T ss_dssp HHGGG---HHHHHHHHHHHHHHHTTS-------H--HHHHHHHHHHTT--S-HHHHHHHHHHHHHHHTT-----GGG--H
T ss_pred HHHHccccHHHHHHHHHHHHHHHHHCC------cHHHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHHHHccchHhhhccc
Confidence 999999999999999999999998764 22344 6777778888 999999999999999999887 233433
Q ss_pred -chHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHhHhhHHhhHhh
Q 001442 462 -YLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDA 506 (1076)
Q Consensus 462 -~l~~ll~~l~~~l~~~~~~v~~~al~ai~~l~~~~~~~~~~~~~~ 506 (1076)
.++.+.+.+...+.++++.||+.+-.++..+....|+.-...+..
T Consensus 173 ~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~a~~~~~~ 218 (228)
T PF12348_consen 173 AFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPERAESILSM 218 (228)
T ss_dssp HHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HHH------
T ss_pred chHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHhhccchhc
Confidence 358899999999999999999999999999988887754444333
No 70
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=98.65 E-value=2.3e-05 Score=86.99 Aligned_cols=358 Identities=16% Similarity=0.183 Sum_probs=212.4
Q ss_pred hhcccccHHHHHHHhhhccccc---CCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHccC
Q 001442 665 KEGFFPWIDQVAPTLVPLLKFY---FHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVEALHKE 741 (1076)
Q Consensus 665 ~~~~~p~l~~~~~~l~~~l~~~---~~~~vr~~a~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~ 741 (1076)
+..+.|+.++++..+...++.. .|+.+- +|+-.++.... ....+....+++.+...+....+..
T Consensus 17 ~~di~p~~~~ll~~Lf~~i~~~~s~ENeylM----k~iMRvl~~~~---------e~~~p~~~~il~~L~~il~~v~kNP 83 (435)
T PF03378_consen 17 KADIQPFAQQLLQNLFALIEKPGSAENEYLM----KCIMRVLSVLQ---------EDILPIAVEILQHLTAILKEVSKNP 83 (435)
T ss_dssp GGGTTCCHHHHHHHHHHHHHTT-STC-HHHH----HHHHHHHHHST---------TTTGGGHHHHHHHHHHHHHHHHTS-
T ss_pred HHHhhhhHHHHHHHHHHHHhcCCCccchHHH----HHHHHHHHHhH---------HHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4558899999999888887542 244443 34333333221 1112234455555555555566666
Q ss_pred CcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcCCCCChHhhhhhhhhhhhHHHHHHH
Q 001442 742 PDTEICASMLDSLNECIQISGPLLDEGQVRSIVDEIKQVITASSSRKRERAERAKAEDFDAEESELIKEENEQEEEVFDQ 821 (1076)
Q Consensus 742 ~~~~~~~~~l~~l~~~i~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ed~d~~~~~~~~e~~e~~~~~~~~ 821 (1076)
.++..--..+++++.+++.+.. .+++.+..+-+.+++.+...++. |. .+..-.
T Consensus 84 snP~FnHylFEsi~~lir~~~~-~~~~~v~~~E~~L~P~f~~ILq~-----------dV---------------~EF~PY 136 (435)
T PF03378_consen 84 SNPRFNHYLFESIGALIRFVCE-ADPEAVSQFEEALFPPFQEILQQ-----------DV---------------QEFIPY 136 (435)
T ss_dssp --HHHHHHHHHHHHHHHHHS-G-GGHH---HHHHHHHHHHHHHHHT-----------T----------------TTTHHH
T ss_pred CCcchhhhHHHHHHHHHHhccC-CChhHHHHHHHHHHHHHHHHHHH-----------HH---------------HHHHHH
Confidence 7888778889999999987553 23444555666677777665531 11 123445
Q ss_pred HHHHHHHHHHHhh-hchhhhHHHHHHhHhh--hhcCCCCHHHHHHHHHHHHHHHHHhhhhhH--hhHHhHHHHHHhhccC
Q 001442 822 VGEILGTLIKTFK-AAFLPFFDELSSYLTP--MWGKDKTAEERRIAICIFDDVAEQCREAAL--KYYETYLPFLLEACND 896 (1076)
Q Consensus 822 ~~~~l~~l~~~~~-~~~~~~~~~l~~~l~~--~l~~~~~~~~r~~al~~l~~l~~~~~~~~~--~~~~~ll~~l~~~l~~ 896 (1076)
+..+++.+....+ +...+.+..++|.++. .++...+. -..+..+..+++..+..+. +++..++..+-+.+.+
T Consensus 137 vfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~lWe~~gni---PalvrLL~a~i~k~~~~i~~~~~l~~iLgvFQkLi~s 213 (435)
T PF03378_consen 137 VFQILAQLLELRPSSPLPDAYKQLFPPLLSPALWERRGNI---PALVRLLQAYIKKDPSFIVANNQLEPILGVFQKLIAS 213 (435)
T ss_dssp HHHHHHHHHHHSS--S--TTTGGGHHHHTSGGGGGSTTTH---HHHHHHHHHHHHHHGGG----S-CHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcchhccCCCc---CcHHHHHHHHHHhCchhhcchhhHHHHHHHHHHHHCC
Confidence 6777888888877 4555566667776654 33322221 2345688888888776553 5788888888888877
Q ss_pred CChhHHhhhhHHHHHHHhhcCC-CchHHHHHHHHHHHHhhcCCCCCChhhhhHHHHHHHHHHHHHhhcC-CC-------C
Q 001442 897 ENQDVRQAAVYGLGVCAEFGGS-VVKPLVGEALSRLNVVIRHPNALQPENLMAYDNAVSALGKICQFHR-DS-------I 967 (1076)
Q Consensus 897 ~~~~vr~~a~~~lg~l~~~~~~-~~~~~~~~il~~L~~~l~~~~~~~~~~~~~~~na~~al~~i~~~~~-~~-------~ 967 (1076)
+..+ ..+++-+..+..+.+. .+.||++.++..+...+++.+. ...+..-+..++.++..++ +. +
T Consensus 214 k~~D--~~gF~LL~~iv~~~p~~~l~~yl~~I~~lll~RLq~skT-----~kf~~~fv~F~~~~~~~~g~~~li~~id~I 286 (435)
T PF03378_consen 214 KAND--HYGFDLLESIVENLPPEALEPYLKQIFTLLLTRLQSSKT-----EKFVKRFVVFLSLFAIKYGPDFLIQTIDSI 286 (435)
T ss_dssp TTCH--HHHHHHHHHHHHHS-HHHHGGGHHHHHHHHHHHHHHC-------HHHHHHHHHHHHHHHHHH-HHHHHHHHHTT
T ss_pred CCcc--hHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhCCc-----HHHHHHHHHHHHHHHHHcCHHHHHHHHHHh
Confidence 6533 4588899999999985 6789999999999999975431 2333344455555544332 21 2
Q ss_pred -C--HhhHHH-HHHhhCCCCCcHHHHHHHHHHHHHHHhhcCCcccCcCcCchhhHHHHHHHHhcCC--------------
Q 001442 968 -D--AAQVVP-AWLNCLPIKGDLIEAKIVHEQLCSMVERSDSDLLGPNHQYLPKIVSVFAEILCGK-------------- 1029 (1076)
Q Consensus 968 -~--~~~~l~-~~l~~lp~~~d~~e~~~~~~~l~~li~~~~~~~~~~~~~~l~~i~~~~~~~l~~~-------------- 1029 (1076)
+ ...++. .|+..++.-....|++.+.-++++|+... +...+......+.+++.+...+...
T Consensus 287 Q~glF~~il~~v~lp~~~k~~~~~erKi~~vGltkLL~es-~~~~~~~~~~w~~ll~~Ll~ll~~p~~~~~~~~e~~~~~ 365 (435)
T PF03378_consen 287 QPGLFGMILEKVWLPDLQKVSGPIERKICAVGLTKLLCES-PAFLSEYSQLWPPLLEALLKLLERPPEASAADEEDFIDE 365 (435)
T ss_dssp STTHHHHHHHHTHHHHGGG--SHHHHHHHHHHHHHHHHSS-TTHHHH-CHHHHHHHHHHHHHHHTTSTT-S----S----
T ss_pred cCCcHHHHHHHHhcCchhhcCCcchhhHHHHHHHHHHhcc-HhhhhHHHHHHHHHHHHHHHHHcCCcccccccccccccc
Confidence 1 233333 35666665455678888888899988433 3333221223445555555554310
Q ss_pred ------------------------CCC-CHHHHHHHHHHHHHHHhhCChhhHHHHHhc-CCHHHHHHHHhh
Q 001442 1030 ------------------------DLA-TEQTLSRIVNLLKQLQQTLPPATLASTWSS-LQPQQQLALQSI 1074 (1076)
Q Consensus 1030 ------------------------~~~-~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~-l~~~~~~~l~~~ 1074 (1076)
..+ -.+.+.-+.+.|+.+.+..||. +.+++++ ||++.|++|++|
T Consensus 366 ~d~~~~gy~~~fs~L~~a~~~~~Dp~~~i~d~~~~~~~~L~~~~~~~~G~-~~~~i~~~l~~~~~~~L~~y 435 (435)
T PF03378_consen 366 EDVEDIGYQVSFSKLAFAGKKPRDPLPEIPDPKQYLAQSLSKLSQAHPGK-IPPLIQQQLPPEAQQALQQY 435 (435)
T ss_dssp -------TT-GGG--GGG------S-TTTTCHHHHHHHHHHHHHHHTTSS-HHHHHGGGS-HHHHHHHHH-
T ss_pred ccchhcccchhhHHHHhCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCc-hHHHHHhhCCHHHHHHhccC
Confidence 000 1247788888999999999998 8888877 999999999986
No 71
>KOG2020 consensus Nuclear transport receptor CRM1/MSN5 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.64 E-value=9.6e-05 Score=88.80 Aligned_cols=139 Identities=26% Similarity=0.400 Sum_probs=112.3
Q ss_pred HHHHHHHhcC--CChHHHHHHHHHHHHhhhcCchHHHHHHHHHHccCCCHHHHHHHHHHHHHhcccCCCCcccCCCHhHH
Q 001442 24 FETLISHLMS--TSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQ 101 (1076)
Q Consensus 24 l~~lL~~~~s--~d~~~r~~Ae~~L~~~~~~~p~~~~~~L~~il~~~~~~~~R~~a~v~Lk~~i~~~~~~~w~~l~~~~~ 101 (1076)
+...+...++ ++++.|.+|.+.+.+++. .|+.+ .....++..+.++.+|++|..+|-+.++.+ |+.++.+.|
T Consensus 12 lldavv~~~~~~~s~~~r~eA~~~l~~lke-~~~~~-~~~~~iL~~s~~~~~k~f~Lqlle~vik~~----W~~~~~~~r 85 (1041)
T KOG2020|consen 12 LLDAVVVTLNPEGSNEERGEAQQILEELKE-EPDSW-LQVYLILKLSTNPILKYFALQLLENVIKFR----WNSLPVEER 85 (1041)
T ss_pred HHHhHHHHhCcccchHHHHHHHHHHHHHHh-CcchH-HHHHHHHhccCCchhheeeHHHHHHHHHHh----cccCCcccc
Confidence 3333444444 578899999999999999 68865 556667777889999999999999999998 999999999
Q ss_pred HHHHHHHHHHHhh----c----chhhHHHHHHHHHHHHHhcccCCCCcchhHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 001442 102 SSLKSMLLQSIQL----E----SAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQL 170 (1076)
Q Consensus 102 ~~lk~~Ll~~l~~----~----~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~~~~~~~r~~al~~L~~l 170 (1076)
..+|.-.+..... + +.+.++.+++.++-.|++.+|| +.||+++|.+.+... .++..++.++.++..+
T Consensus 86 ~glk~~v~~~~~~~~~~~~~~~~~~~~~~kL~~i~Vqi~K~eWp-~~wp~~i~dl~~~s~-~s~~~~el~m~Il~lL 160 (1041)
T KOG2020|consen 86 VGLKNYVLTLIIEASPDEDVSETEKHLLNKLNLILVQIVKREWP-AIWPTFIPDLAQSSK-TSETVCELSMIILLLL 160 (1041)
T ss_pred HHHHHHHHHHHhhcCCcHhHHHHHHHHHHHHhHHHHHHHHHHHH-hhcchhhhhHHHHhh-cCcccchHHHHHHHHH
Confidence 9999988876532 1 2566899999999999999999 799999999998877 3455666666666655
No 72
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=98.60 E-value=0.0026 Score=71.37 Aligned_cols=515 Identities=10% Similarity=0.081 Sum_probs=242.8
Q ss_pred ChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhc-CCcccccCchHHH--HHH
Q 001442 393 HPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSEN-CTPEILTPYLDGI--VSK 469 (1076)
Q Consensus 393 ~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~aL~~l~~~-~~~~~l~~~l~~l--l~~ 469 (1076)
+|-+-..++.|+|++.+|+.-... .-+..++.+.+.+.- ..+|.+||.++-.++.. ++|-.=.+.+..+ ...
T Consensus 206 npgl~~~cLdc~g~fVSWIdInLI--aNd~f~nLLy~fl~i---eelR~aac~cilaiVsKkMkP~dKL~lln~L~q~l~ 280 (980)
T KOG2021|consen 206 NPGLINSCLDCIGSFVSWIDINLI--ANDYFLNLLYKFLNI---EELRIAACNCILAIVSKKMKPMDKLALLNMLNQTLE 280 (980)
T ss_pred CchHHHHHHHHHHHHhhhhhhhhh--hchhHHHHHHHHHhH---HHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHH
Confidence 888999999999999999854331 234566777777765 78999999998888743 3331111223222 111
Q ss_pred HHHHhhcCchhHHHHHHHHHHHHHHHhHhhHHhhHhhhHHHHHHHHhccCCchhhhhHHHHHHHHHHHHHHhchhhhhhh
Q 001442 470 LLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDD 549 (1076)
Q Consensus 470 l~~~l~~~~~~v~~~al~ai~~l~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~g~~~~~~~ 549 (1076)
+.-. .+.+...-....+-++.++...|.++.....++ +++.+..++ .+|+. .
T Consensus 281 lfg~-~s~dq~~d~df~e~vskLitg~gvel~~i~s~l-----------nseld~~~k---qn~l~-------------~ 332 (980)
T KOG2021|consen 281 LFGY-HSADQMDDLDFWESVSKLITGFGVELTIIISQL-----------NSELDTLYK---QNVLS-------------I 332 (980)
T ss_pred HHhh-hccccccCchHHHHHHHHHhhcceeeehhHhhh-----------hhccCHHHH---HHHHH-------------H
Confidence 1111 111111112223444445554444322111111 011111111 12222 2
Q ss_pred HHHHHHHHHHHhcCCCCCCChhhHHHHHHHHHHHHHhcc------CcccchhhhhHHHHHhccCCCCccccCCCCCcccc
Q 001442 550 AKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQ------DFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIE 623 (1076)
Q Consensus 550 ~~~ii~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~------~~~~~l~~i~~~ll~~~~~~~~~~~~~~d~d~~~~ 623 (1076)
+.+++.++++..+.+ ++.....++.+|......++. .-..++..++..+++.+.+|+...-.++ ..++
T Consensus 333 ll~~vpyllq~l~~e---~ddit~~ifpFlsdyl~~LKkl~~ls~~qk~~l~~illai~kqicydemy~nddn---~tg~ 406 (980)
T KOG2021|consen 333 LLEIVPYLLQFLNNE---FDDITAKIFPFLSDYLAFLKKLKALSSPQKVPLHKILLAIFKQICYDEMYFNDDN---VTGD 406 (980)
T ss_pred HHHHHHHHHHHhccc---chhhHHHHHHHHHHHHHHHhhcccccchhhccHHHHHHHHHHHHhccHHhhcccC---CCCc
Confidence 223455555544332 233445555565555444332 3455678888888888888764321111 0111
Q ss_pred CCCCcccchhhcCCceeeecchhHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHhhhcccccCCHHHHHHHHHHHHHHH
Q 001442 624 DSDDDSMETITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELL 703 (1076)
Q Consensus 624 ~~d~~~~~~~~~~~~~~~v~~~~~~~k~~A~~~l~~i~~~~~~~~~p~l~~~~~~l~~~l~~~~~~~vr~~a~~~l~~L~ 703 (1076)
+ +++..+.+ | ..--..+-.++..-++-+...+.+.+.......... ++..-+.|...+..+.
T Consensus 407 E-eEa~f~e~---------R-------kkLk~fqdti~~idpsl~l~~Ir~slS~al~ns~e~-swqevE~Aiylly~lg 468 (980)
T KOG2021|consen 407 E-EEAFFEEV---------R-------KKLKNFQDTIVVIDPSLFLNNIRQSLSAALMNSKEE-SWQEVELAIYLLYNLG 468 (980)
T ss_pred h-HHHHHHHH---------H-------HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcc-hHHHHHHHHHHHHHHh
Confidence 0 11111111 1 000111222222223334444445444444443332 5566678888777776
Q ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHH-ccCCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Q 001442 704 RSAKLAIEKGLAPGRNESYVKQLSDFIIPALVEAL-HKEPDTEICASMLDSLNECIQISGPLLDEGQVRSIVDEIKQVIT 782 (1076)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l-~~~~~~~~~~~~l~~l~~~i~~~g~~~~~~~~~~~~~~l~~~l~ 782 (1076)
.+.+....+. ..|.-. .......+++.++..- -..+.+.+....++.+..-.+-+. ..++++..++..+
T Consensus 469 E~l~~~~~~~-nsgd~s--~~~vl~~~~~ll~tsqv~~h~h~lVqLlfmE~ivRY~kff~--~esq~ip~vL~aF----- 538 (980)
T KOG2021|consen 469 ECLKNNYFGL-NSGDIS--TSQVLFLNELLLMTSQVLAHDHELVQLLFMELIVRYNKFFS--TESQKIPLVLNAF----- 538 (980)
T ss_pred hccccccccc-cCcccc--HHHHHHHHHHHHHHcccccCCchHHHHHHHHHHHHHHHHHh--cchhhhHHHHHHH-----
Confidence 6553221110 011111 1112223333333322 122344443333333333222111 1122222222221
Q ss_pred HHHHhHHHHHHhhcCCCCChHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHhHhhhhc-CCC--C--
Q 001442 783 ASSSRKRERAERAKAEDFDAEESELIKEENEQEEEVFDQVGEILGTLIKTFKAAFLPFFDELSSYLTPMWG-KDK--T-- 857 (1076)
Q Consensus 783 ~~~~~~~~~~~~~~~ed~d~~~~~~~~e~~e~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~-~~~--~-- 857 (1076)
+..++.+ . ..+.++..+.-++..++|..+....|+++.++..+-+.|. +.. +
T Consensus 539 --ld~rglh---n------------------~ne~Vr~RawYLF~RfVKlLkkqlvpfie~iln~iqdlL~~~vtt~N~~ 595 (980)
T KOG2021|consen 539 --LDSRGLH---N------------------KNENVRLRAWYLFTRFVKLLKKQLVPFIEEILNKIQDLLHIKVTTINAQ 595 (980)
T ss_pred --ccchhcc---c------------------cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCCCcCcc
Confidence 1111111 0 1145667788888888888888888888888777766661 100 0
Q ss_pred ------HHHHHH---HHHHHHHHHHHhhhhhHhhHHhHHH----------HHHhhccCCCh----hHHhhhhHHHHHHHh
Q 001442 858 ------AEERRI---AICIFDDVAEQCREAALKYYETYLP----------FLLEACNDENQ----DVRQAAVYGLGVCAE 914 (1076)
Q Consensus 858 ------~~~r~~---al~~l~~l~~~~~~~~~~~~~~ll~----------~l~~~l~~~~~----~vr~~a~~~lg~l~~ 914 (1076)
.+.... ++|++-..-+...+.-..|...++. .......|++. .-+.+++.++|.+++
T Consensus 596 s~~lt~fddqlyIfEtiGviI~l~n~paE~qaay~~~litpl~~~~~igl~~a~lasde~~pv~Ia~c~~~lmaig~lak 675 (980)
T KOG2021|consen 596 SDNLTIFDDQLYIFETIGVIITLNNSPAELQAAYANTLITPLILDQIIGLLFAQLASDEASPVVIAECHHILMAIGTLAK 675 (980)
T ss_pred ccccccccccceeeecceEEEeCCCCCHHHHHHHHhcccChHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHhh
Confidence 001111 2222222212211111112222221 11122233332 236777889999998
Q ss_pred hcCCCc--------hHHHHHHHHHHHHhhcCCCCCChhhhhHHHHHHHHHHHHHhhcCCCC-C-HhhHHHHHHhhCCCCC
Q 001442 915 FGGSVV--------KPLVGEALSRLNVVIRHPNALQPENLMAYDNAVSALGKICQFHRDSI-D-AAQVVPAWLNCLPIKG 984 (1076)
Q Consensus 915 ~~~~~~--------~~~~~~il~~L~~~l~~~~~~~~~~~~~~~na~~al~~i~~~~~~~~-~-~~~~l~~~l~~lp~~~ 984 (1076)
...... ...+..+++.+...+..... ...+|..+-..++||+...+..+ | ++..+..+|+.-
T Consensus 676 gf~~rlvt~~qvg~~~vf~~~ldvil~~ls~f~k----~E~iRsavrft~hRmI~~lg~~vlPfipklie~lL~s~---- 747 (980)
T KOG2021|consen 676 GFHIRLVTENQVGNMVVFSNILDVILVTLSFFNK----FENIRSAVRFTFHRMIPILGNKVLPFIPKLIELLLSST---- 747 (980)
T ss_pred cccccCcchhcccHHHHHHHHHHHHHHHHhhccc----cchhHHHHHHHHHHHHHhcchhhhcchHHHHHHHHhcC----
Confidence 765321 12355667777776665442 34789999999999999887776 3 555555555543
Q ss_pred cHHHHHHHHHHHHHHHhhcCC
Q 001442 985 DLIEAKIVHEQLCSMVERSDS 1005 (1076)
Q Consensus 985 d~~e~~~~~~~l~~li~~~~~ 1005 (1076)
|.-|-......+..|+...+.
T Consensus 748 d~kEmvdfl~flsQLihkfk~ 768 (980)
T KOG2021|consen 748 DLKEMVDFLGFLSQLIHKFKT 768 (980)
T ss_pred CHHHHHHHHHHHHHHHHHHHH
Confidence 444555556666666655543
No 73
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.58 E-value=0.00037 Score=77.48 Aligned_cols=234 Identities=12% Similarity=0.255 Sum_probs=152.8
Q ss_pred chhHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhCCcchHhHHhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Q 001442 142 PELLPFMFQCVSSDSVKLQESAFLIFAQLIINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELA 221 (1076)
Q Consensus 142 ~~ll~~l~~~~~~~~~~~r~~al~~L~~l~~~~~~~l~~~~~~~~~~~l~p~~l~~l~~~~~~~~~~~~~~~~~~l~~l~ 221 (1076)
-++-+.++.+++++.+-+|..|+.++..++..+ +..++.-+|.+ .+-+.++|+.+...+...+++++
T Consensus 143 RDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkY---------PeAlr~~FprL----~EkLeDpDp~V~SAAV~VICELA 209 (877)
T KOG1059|consen 143 RDLADDVFTLLNSSKPYVRKKAILLLYKVFLKY---------PEALRPCFPRL----VEKLEDPDPSVVSAAVSVICELA 209 (877)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhh---------hHhHhhhHHHH----HHhccCCCchHHHHHHHHHHHHH
Confidence 567788899999999999999999987775332 33334444444 44567899999999999999999
Q ss_pred ccCcHHHHHhHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHhhcccchhhccchhhHHHHHHHHHHhhcCCCCCccc
Q 001442 222 GTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLW 301 (1076)
Q Consensus 222 ~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~dd~~~ 301 (1076)
...|.-+.+..+.++..|.+.. +.-+-...+..+..+.- ..|. .-.++++.+...|...
T Consensus 210 rKnPknyL~LAP~ffkllttSs-----NNWmLIKiiKLF~aLtp---lEPR-------LgKKLieplt~li~sT------ 268 (877)
T KOG1059|consen 210 RKNPQNYLQLAPLFYKLLVTSS-----NNWVLIKLLKLFAALTP---LEPR-------LGKKLIEPITELMEST------ 268 (877)
T ss_pred hhCCcccccccHHHHHHHhccC-----CCeehHHHHHHHhhccc---cCch-------hhhhhhhHHHHHHHhh------
Confidence 9999877776666666555422 22233333455555543 1232 2344555555444211
Q ss_pred cCCCCCCcccCCCCchhhHHHHHHHHHHH-----cCC-CcchHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhcHHHHH
Q 001442 302 HSAETEDEDAGESSNYSVGQECLDRLAIA-----LGG-NTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMV 375 (1076)
Q Consensus 302 ~~~~~e~~d~~e~~~~~~a~~~l~~l~~~-----~~~-~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~ 375 (1076)
..-..-.+|+.++... .+. ...+...++.+..++.++|.+.|+-++.+++.++...+....
T Consensus 269 -------------~AmSLlYECvNTVVa~s~s~g~~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vq 335 (877)
T KOG1059|consen 269 -------------VAMSLLYECVNTVVAVSMSSGMSDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQ 335 (877)
T ss_pred -------------HHHHHHHHHHHHheeehhccCCCCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHH
Confidence 0111223444433322 111 133455677778888999999999999999999998876555
Q ss_pred HhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccC
Q 001442 376 KNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDD 433 (1076)
Q Consensus 376 ~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~ 433 (1076)
.| -..++++|.|.++.+|-.|+..+..+.. .+.+..++..|+..+..
T Consensus 336 a~----kdlIlrcL~DkD~SIRlrALdLl~gmVs-------kkNl~eIVk~LM~~~~~ 382 (877)
T KOG1059|consen 336 AH----KDLILRCLDDKDESIRLRALDLLYGMVS-------KKNLMEIVKTLMKHVEK 382 (877)
T ss_pred Hh----HHHHHHHhccCCchhHHHHHHHHHHHhh-------hhhHHHHHHHHHHHHHh
Confidence 44 3567788999999999999988776653 33445556666655544
No 74
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.56 E-value=3.4e-05 Score=82.01 Aligned_cols=166 Identities=17% Similarity=0.189 Sum_probs=133.9
Q ss_pred hHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHH
Q 001442 337 VPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQ 416 (1076)
Q Consensus 337 ~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~ 416 (1076)
.+.++..+.....+..|+.|......++.+.....-.-...+.+++..+.....||+..+|..|+.+|+..++..+...
T Consensus 215 ~~~il~q~~ss~ts~~~~~ritd~Af~ael~~~~~l~~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv- 293 (533)
T KOG2032|consen 215 MGKILAQLLSSITSEKENGRITDIAFFAELKRPKELDKTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKV- 293 (533)
T ss_pred HHHHHhhcccccchhcccchHHHHHHHHHHhCcccccccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHH-
Confidence 3444443334455677999988877777765432111114577888888889999999999999999999999876666
Q ss_pred hhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHh
Q 001442 417 NQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSS 496 (1076)
Q Consensus 417 ~~~~~~ll~~l~~~l~~~~~~~v~~~a~~aL~~l~~~~~~~~l~~~l~~ll~~l~~~l~~~~~~v~~~al~ai~~l~~~~ 496 (1076)
..+...++..++.+|-|..+..|+..+..+|..+.+......+.+|+-++--.+.+++.+.++++|..++..+|.++...
T Consensus 294 ~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~ 373 (533)
T KOG2032|consen 294 RTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLA 373 (533)
T ss_pred HHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHc
Confidence 68899999999999888568899999999999999988777789999999999999999999999999999999999988
Q ss_pred HhhHHhh
Q 001442 497 QEHFQKY 503 (1076)
Q Consensus 497 ~~~~~~~ 503 (1076)
|..-..+
T Consensus 374 g~~~e~~ 380 (533)
T KOG2032|consen 374 GGGWEEF 380 (533)
T ss_pred CCCchhh
Confidence 7654433
No 75
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=98.51 E-value=1.2e-06 Score=74.09 Aligned_cols=95 Identities=20% Similarity=0.235 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHHHHhhhhhHhhHHhHHHHHHhhccCCChhHHhhhhHHHHHHHhhcCCCchHHHHHHHHHHHHhhcCCC
Q 001442 860 ERRIAICIFDDVAEQCREAALKYYETYLPFLLEACNDENQDVRQAAVYGLGVCAEFGGSVVKPLVGEALSRLNVVIRHPN 939 (1076)
Q Consensus 860 ~r~~al~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~vr~~a~~~lg~l~~~~~~~~~~~~~~il~~L~~~l~~~~ 939 (1076)
.|..++-.++.++..+|....+|++.++|.+++++.|++..||..|+.++..+++..+..+.+|+.+++..|.+.+.+++
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d 81 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPD 81 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 36778899999999999999999999999999999999999999999999999999999999999999999999998874
Q ss_pred CCChhhhhHHHHHHHHHHHHHh
Q 001442 940 ALQPENLMAYDNAVSALGKICQ 961 (1076)
Q Consensus 940 ~~~~~~~~~~~na~~al~~i~~ 961 (1076)
..+| +++..+-|+++
T Consensus 82 ------~~Vr-~~a~~Ld~llk 96 (97)
T PF12755_consen 82 ------ENVR-SAAELLDRLLK 96 (97)
T ss_pred ------hhHH-HHHHHHHHHhc
Confidence 3455 56677766653
No 76
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.51 E-value=1.7e-05 Score=92.70 Aligned_cols=291 Identities=15% Similarity=0.169 Sum_probs=183.2
Q ss_pred hhhHHHHHHHHHHHHHhcccCCCCcchhHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhCCcchHhHHhhhHHHHHH
Q 001442 117 AKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLIINFIQCLTSSADRDRFQDLLPLMMR 196 (1076)
Q Consensus 117 ~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~~~~~~~r~~al~~L~~l~~~~~~~l~~~~~~~~~~~l~p~~l~ 196 (1076)
...-|..+...+..++.+.........++|+++.++.++.+.+|..|+.+|..++..+ +.+. +.+...|.++ ++.
T Consensus 436 ~~~tK~~ALeLl~~lS~~i~de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~V-r~~~-~~daniF~eY---lfP 510 (1431)
T KOG1240|consen 436 TIQTKLAALELLQELSTYIDDEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALV-RDIP-PSDANIFPEY---LFP 510 (1431)
T ss_pred cchhHHHHHHHHHHHhhhcchHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhc-cCCC-cccchhhHhh---hhh
Confidence 4455666777777777765544577889999999999999999999999998875332 2221 1223334333 344
Q ss_pred HHHHHHhC-CCHHHHHHHHHHHHHHHccCcHHHHHhHHHHHHHHHHH-hcCCCcchhHHHHHHHHHHHHHHhhcccchhh
Q 001442 197 TLTESLNN-GNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQI-AEAESLEEGTRHLAIEFVITLAEARERAPGMM 274 (1076)
Q Consensus 197 ~l~~~~~~-~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~l~~~-~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~ 274 (1076)
.|..+..+ ....+|.....+|..++.....++.- ...+-.. +.| +.+.+ +..+ +..-
T Consensus 511 ~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~-----~q~~~~~g~~n-~~nse----------t~~~-----~~~~ 569 (1431)
T KOG1240|consen 511 HLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLEL-----TQELRQAGMLN-DPNSE----------TAPE-----QNYN 569 (1431)
T ss_pred hhHhhhccCccceehhhHHhhHHHHHHHHHHHHHH-----HHHHHhccccc-Ccccc----------cccc-----cccc
Confidence 44444555 45567888888888888765544321 1110010 111 11111 0000 0000
Q ss_pred ccchhhHHHHHHHHHHhhcCCCCCccccCCCCCCcccCCCCchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhcCCChh
Q 001442 275 RKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQ 354 (1076)
Q Consensus 275 ~~~~~~~~~l~~~l~~~l~~~~dd~~~~~~~~e~~d~~e~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~ 354 (1076)
.........+-......+.+. +..++++-.+.|..|+..+|...--..+++++..++++.||.
T Consensus 570 ~~~~~L~~~V~~~v~sLlsd~-----------------~~~Vkr~Lle~i~~LC~FFGk~ksND~iLshLiTfLNDkDw~ 632 (1431)
T KOG1240|consen 570 TELQALHHTVEQMVSSLLSDS-----------------PPIVKRALLESIIPLCVFFGKEKSNDVILSHLITFLNDKDWR 632 (1431)
T ss_pred hHHHHHHHHHHHHHHHHHcCC-----------------chHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHhcCccHH
Confidence 011111111112222222211 122455666668888888886666677889999999999999
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCC
Q 001442 355 KHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDF 434 (1076)
Q Consensus 355 ~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~ 434 (1076)
.|-|-+..+..++-..+.. ..-+.++|.+.++|.|+.+.|-..|+.++..+++. ..+.+.+.-+++..+...|-.
T Consensus 633 LR~aFfdsI~gvsi~VG~r--s~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~--~ll~K~~v~~i~~~v~PlL~h- 707 (1431)
T KOG1240|consen 633 LRGAFFDSIVGVSIFVGWR--SVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKL--GLLRKPAVKDILQDVLPLLCH- 707 (1431)
T ss_pred HHHHHHhhccceEEEEeee--eHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHh--cccchHHHHHHHHhhhhheeC-
Confidence 9998888777665543321 01234789999999999999999999999988864 223345666777777777777
Q ss_pred CChhHHHHHHHHHHHhhhcCC
Q 001442 435 QNPRVQAHAASAVLNFSENCT 455 (1076)
Q Consensus 435 ~~~~v~~~a~~aL~~l~~~~~ 455 (1076)
|+.=+|.++|..+......++
T Consensus 708 PN~WIR~~~~~iI~~~~~~ls 728 (1431)
T KOG1240|consen 708 PNLWIRRAVLGIIAAIARQLS 728 (1431)
T ss_pred chHHHHHHHHHHHHHHHhhhh
Confidence 888899999999999887765
No 77
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=98.50 E-value=0.0034 Score=68.10 Aligned_cols=184 Identities=16% Similarity=0.159 Sum_probs=116.8
Q ss_pred cchHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhc-HHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhch
Q 001442 335 TIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGC-AKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGP 413 (1076)
Q Consensus 335 ~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~-~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~ 413 (1076)
+.+..+.|++..++++.-..+.-.+..++..+++.. ++ +.+.+.+..+...|..+....|.+|...|.+++...+.
T Consensus 260 q~~~q~rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv~~---~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~ 336 (898)
T COG5240 260 QALLQLRPFLNSWLSDKFEMVFLEAARAVCALSEENVGS---QFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQ 336 (898)
T ss_pred HHHHHHHHHHHHHhcCcchhhhHHHHHHHHHHHHhccCH---HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCc
Confidence 667778889999988754444444444555544332 22 34566777777788888899999999999999976544
Q ss_pred hHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCchhHHHHHHHHHHHHH
Q 001442 414 DLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVA 493 (1076)
Q Consensus 414 ~~~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~aL~~l~~~~~~~~l~~~l~~ll~~l~~~l~~~~~~v~~~al~ai~~l~ 493 (1076)
.+ ...=+.+-..+.| .+ |.-+.+|+..+++.-..+ -.+.++..+...+.+-+...+..++.++.+++
T Consensus 337 kv-----~vcN~evEsLIsd-~N---r~IstyAITtLLKTGt~e----~idrLv~~I~sfvhD~SD~FKiI~ida~rsLs 403 (898)
T COG5240 337 KV-----SVCNKEVESLISD-EN---RTISTYAITTLLKTGTEE----TIDRLVNLIPSFVHDMSDGFKIIAIDALRSLS 403 (898)
T ss_pred ee-----eecChhHHHHhhc-cc---ccchHHHHHHHHHcCchh----hHHHHHHHHHHHHHhhccCceEEeHHHHHHHH
Confidence 33 1111223334445 44 345667788888775544 34677777777777777777888899999998
Q ss_pred HHhHhhHHhhHhhhHHHHHHHHhccCCchhhhhHHHHHHHHHHHHHHh
Q 001442 494 DSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAV 541 (1076)
Q Consensus 494 ~~~~~~~~~~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~ 541 (1076)
...+..-..|++ +|...+.+. .....+..++++++.+....
T Consensus 404 l~Fp~k~~s~l~----FL~~~L~~e---Gg~eFK~~~Vdaisd~~~~~ 444 (898)
T COG5240 404 LLFPSKKLSYLD----FLGSSLLQE---GGLEFKKYMVDAISDAMEND 444 (898)
T ss_pred hhCcHHHHHHHH----HHHHHHHhc---ccchHHHHHHHHHHHHHhhC
Confidence 877765444444 444444332 22345556667766655443
No 78
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.50 E-value=0.0091 Score=72.63 Aligned_cols=128 Identities=17% Similarity=0.131 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHcCCCcchHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHH
Q 001442 320 GQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWA 399 (1076)
Q Consensus 320 a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~ 399 (1076)
+..+...++...+-..-+...+..+...+.++....|-.|+.||+.+++.-+..+. .+.+-..+-..+.|.+..||.+
T Consensus 797 a~li~~~la~~r~f~~sfD~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~--~~dvq~~Vh~R~~DssasVREA 874 (1692)
T KOG1020|consen 797 AKLIVFYLAHARSFSQSFDPYLKLILSVLGENAIALRTKALKCLSMIVEADPSVLS--RPDVQEAVHGRLNDSSASVREA 874 (1692)
T ss_pred HHHHHHHHHhhhHHHHhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhc--CHHHHHHHHHhhccchhHHHHH
Confidence 33444444443221233455666666777888899999999999999987664332 2456678888999999999999
Q ss_pred HHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCC
Q 001442 400 AINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCT 455 (1076)
Q Consensus 400 a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~aL~~l~~~~~ 455 (1076)
|+..+|++.-..+ ++..+....+.+.+.| +...||.++...+..+|+..+
T Consensus 875 aldLvGrfvl~~~-----e~~~qyY~~i~erIlD-tgvsVRKRvIKIlrdic~e~p 924 (1692)
T KOG1020|consen 875 ALDLVGRFVLSIP-----ELIFQYYDQIIERILD-TGVSVRKRVIKILRDICEETP 924 (1692)
T ss_pred HHHHHhhhhhccH-----HHHHHHHHHHHhhcCC-CchhHHHHHHHHHHHHHHhCC
Confidence 9999999986654 3445555667788889 888999999999999998865
No 79
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=98.43 E-value=1.4e-06 Score=79.61 Aligned_cols=112 Identities=19% Similarity=0.227 Sum_probs=89.8
Q ss_pred HHHHHHHhhcCCChhHHHHHHHHHHHHHhhcHHHHHHhHH-HHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhh
Q 001442 340 ASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLE-QVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQ 418 (1076)
Q Consensus 340 l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~-~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~ 418 (1076)
+++.+.+.+++.+|..|+.++.+++.++.+.++.....+. .+++.+.+.+.|+++.+|..+++++++++...+.....-
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 87 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIV 87 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHH
Confidence 3455556677788999999999999999886654444444 788999999999999999999999999998754333112
Q ss_pred hhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhh
Q 001442 419 FHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSE 452 (1076)
Q Consensus 419 ~~~~ll~~l~~~l~~~~~~~v~~~a~~aL~~l~~ 452 (1076)
.-..+++.+.+.+.+ .+..++..++++|.++++
T Consensus 88 ~~~g~l~~l~~~l~~-~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 88 LEAGGVPKLVNLLDS-SNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHCCChHHHHHHHhc-CCHHHHHHHHHHHHHhhC
Confidence 334589999999998 789999999999998864
No 80
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.42 E-value=1.8e-05 Score=92.40 Aligned_cols=262 Identities=20% Similarity=0.175 Sum_probs=175.5
Q ss_pred HHHHHHHHHHHHHHHccCcHHHHHhHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHhhcccchhhccchhhHHHHHH
Q 001442 207 EATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFA 286 (1076)
Q Consensus 207 ~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~l~~ 286 (1076)
.+.+..+++.|..++....+ ..-+..++++++.++.+ .+.++|..|++.+..+...-+..|.. ...-|.+-++|
T Consensus 437 ~~tK~~ALeLl~~lS~~i~d--e~~LDRVlPY~v~l~~D--s~a~Vra~Al~Tlt~~L~~Vr~~~~~--daniF~eYlfP 510 (1431)
T KOG1240|consen 437 IQTKLAALELLQELSTYIDD--EVKLDRVLPYFVHLLMD--SEADVRATALETLTELLALVRDIPPS--DANIFPEYLFP 510 (1431)
T ss_pred chhHHHHHHHHHHHhhhcch--HHHHhhhHHHHHHHhcC--chHHHHHHHHHHHHHHHhhccCCCcc--cchhhHhhhhh
Confidence 35566777877777654433 23467888888888854 57889999999988876642211110 11124455677
Q ss_pred HHHHhhcCCCCCccccCCCCCCcccCCCCchhhHHHHHHHHHHHc------------------CC-------------Cc
Q 001442 287 ILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIAL------------------GG-------------NT 335 (1076)
Q Consensus 287 ~l~~~l~~~~dd~~~~~~~~e~~d~~e~~~~~~a~~~l~~l~~~~------------------~~-------------~~ 335 (1076)
.+-.++.+.. ....+.+-+.+|..||... +. ..
T Consensus 511 ~L~~l~~d~~----------------~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~ 574 (1431)
T KOG1240|consen 511 HLNHLLNDSS----------------AQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQA 574 (1431)
T ss_pred hhHhhhccCc----------------cceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHH
Confidence 7655543311 1112222222332222210 00 01
Q ss_pred chHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhH
Q 001442 336 IVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDL 415 (1076)
Q Consensus 336 ~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~ 415 (1076)
+...+-+.+..++.+++..+|.+-+..++-++.-.+.. +.=+-+++.++..|+|.++.+|.+-...+.-++-..+..
T Consensus 575 L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~--ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~r- 651 (1431)
T KOG1240|consen 575 LHHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKE--KSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWR- 651 (1431)
T ss_pred HHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhc--ccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeee-
Confidence 23334444556667777888988888866665543321 112347889999999999999999888888777666653
Q ss_pred HhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHH
Q 001442 416 QNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADS 495 (1076)
Q Consensus 416 ~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~aL~~l~~~~~~~~l~~~l~~ll~~l~~~l~~~~~~v~~~al~ai~~l~~~ 495 (1076)
..-+-++|.+.++|.| +.+.|...|+.+|..+++..--+ .+++-++++....+|-+++.-+|..++..|.+++..
T Consensus 652 --s~seyllPLl~Q~ltD-~EE~Viv~aL~~ls~Lik~~ll~--K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ 726 (1431)
T KOG1240|consen 652 --SVSEYLLPLLQQGLTD-GEEAVIVSALGSLSILIKLGLLR--KPAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQ 726 (1431)
T ss_pred --eHHHHHHHHHHHhccC-cchhhHHHHHHHHHHHHHhcccc--hHHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHhh
Confidence 2345688999999999 99999999999999999874322 478889999999999999999999999999999887
Q ss_pred hHh
Q 001442 496 SQE 498 (1076)
Q Consensus 496 ~~~ 498 (1076)
.+.
T Consensus 727 ls~ 729 (1431)
T KOG1240|consen 727 LSA 729 (1431)
T ss_pred hhh
Confidence 764
No 81
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=98.39 E-value=6.4e-07 Score=67.86 Aligned_cols=55 Identities=33% Similarity=0.464 Sum_probs=52.6
Q ss_pred hhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHh
Q 001442 353 WQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQL 407 (1076)
Q Consensus 353 ~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l 407 (1076)
|.+|.+|+.+||.+++.+++.+.++++++++.+...|+|+++.||.+|+++||++
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 8899999999999999999999999999999999999999999999999999864
No 82
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.33 E-value=0.014 Score=67.17 Aligned_cols=158 Identities=18% Similarity=0.238 Sum_probs=112.4
Q ss_pred hhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhh-ccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHH
Q 001442 394 PRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGA-MDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLV 472 (1076)
Q Consensus 394 ~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~-l~~~~~~~v~~~a~~aL~~l~~~~~~~~l~~~l~~ll~~l~~ 472 (1076)
...-.+++.++..++++++... ...++.++...... +.. .++..-..+...++.++.-+... .-|++..+|.|++
T Consensus 481 ~~~tEaci~~~~sva~~~~~t~-~~~i~rl~~~~asik~S~-~n~ql~~Tss~~igs~s~~l~e~--P~~ln~sl~~L~~ 556 (982)
T KOG2022|consen 481 LNRTEACIFQFQSVAEYLGETE-STWIPRLFETSASIKLSA-PNPQLLSTSSDLIGSLSNWLGEH--PMYLNPSLPLLFQ 556 (982)
T ss_pred HHHHHHHHHHHHHHHhhcCcch-hHHHHHHHHhcccccccc-CChhHHHHHHHHHHHHHHHHhcC--CcccCchHHHHHH
Confidence 3455667788888888887644 23333333333221 222 46666677777777777665533 2466677777777
Q ss_pred HhhcCchhHHHHHHHHHHHHHHHhHhhHHhhHhhhHHHHHHHHhccCCchhhhhHHHHHHHHHHHHHHhchhhhhhhHHH
Q 001442 473 LLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQ 552 (1076)
Q Consensus 473 ~l~~~~~~v~~~al~ai~~l~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~g~~~~~~~~~~ 552 (1076)
.+.++. .-..++..+..++..+..++.||.+.++......+.+..- ....|-+++.++|.+.+...+|....|+..
T Consensus 557 ~Lh~sk--~s~q~i~tl~tlC~~C~~~L~py~d~~~a~~~e~l~~~~~--~~S~~~klm~sIGyvls~~~pEe~~kyl~~ 632 (982)
T KOG2022|consen 557 GLHNSK--ESEQAISTLKTLCETCPESLDPYADQFSAVCYEVLNKSNA--KDSDRLKLMKSIGYVLSRLKPEEIPKYLMK 632 (982)
T ss_pred HhcCch--HHHHHHHHHHHHHHhhhhhCchHHHHHHHHHHHHhccccc--CchHHHHHHHHHHHHHHhccHHhHHHHHHH
Confidence 776443 4456778899999999999999999999999998876332 233577899999999988888888889999
Q ss_pred HHHHHHH
Q 001442 553 VMEVLMS 559 (1076)
Q Consensus 553 ii~~l~~ 559 (1076)
+++.++.
T Consensus 633 lin~il~ 639 (982)
T KOG2022|consen 633 LINPILS 639 (982)
T ss_pred HHHHHHH
Confidence 8888776
No 83
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.32 E-value=0.0028 Score=70.82 Aligned_cols=179 Identities=16% Similarity=0.263 Sum_probs=105.8
Q ss_pred cCCCHHHHHHHHHHHHHhcccCCCCcccCCCHhHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhcccCCCCcchhHH
Q 001442 67 RSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLP 146 (1076)
Q Consensus 67 ~~~~~~~R~~a~v~Lk~~i~~~~~~~w~~l~~~~~~~lk~~Ll~~l~~~~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~ 146 (1076)
++..+.+|.-|..+|-+..-+-+ ..+.+... +|-+.|. ++++.|..++..+|..+|+.. | ..+-+|-|
T Consensus 154 ~sskpYvRKkAIl~lykvFLkYP----eAlr~~Fp-----rL~EkLe-DpDp~V~SAAV~VICELArKn-P-knyL~LAP 221 (877)
T KOG1059|consen 154 NSSKPYVRKKAILLLYKVFLKYP----EALRPCFP-----RLVEKLE-DPDPSVVSAAVSVICELARKN-P-QNYLQLAP 221 (877)
T ss_pred hcCchHHHHHHHHHHHHHHHhhh----HhHhhhHH-----HHHHhcc-CCCchHHHHHHHHHHHHHhhC-C-cccccccH
Confidence 35667777777777766665531 23333222 2233343 678888888888888888754 4 23444444
Q ss_pred HHHHhhcCC-CHHHHHHHHHHHHHH-------------------------------HHHHHHh-hCCcchHhHHhhhHHH
Q 001442 147 FMFQCVSSD-SVKLQESAFLIFAQL-------------------------------IINFIQC-LTSSADRDRFQDLLPL 193 (1076)
Q Consensus 147 ~l~~~~~~~-~~~~r~~al~~L~~l-------------------------------~~~~~~~-l~~~~~~~~~~~l~p~ 193 (1076)
.+...+... |.=+--.-+.+++.+ +..++.. +... ...-...+..
T Consensus 222 ~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g--~~d~~asiqL 299 (877)
T KOG1059|consen 222 LFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGKKLIEPITELMESTVAMSLLYECVNTVVAVSMSSG--MSDHSASIQL 299 (877)
T ss_pred HHHHHHhccCCCeehHHHHHHHhhccccCchhhhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccC--CCCcHHHHHH
Confidence 444444221 111111122222222 1111111 0000 0011223455
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHccCcHHHHHhHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHH
Q 001442 194 MMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAE 265 (1076)
Q Consensus 194 ~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~r~~al~~l~~l~~ 265 (1076)
.++-|..++.+.|+..+..++-++..++..+|..+..|-.-++. ++. +.|+.+|..|++++..++.
T Consensus 300 CvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~kdlIlr----cL~--DkD~SIRlrALdLl~gmVs 365 (877)
T KOG1059|consen 300 CVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAHKDLILR----CLD--DKDESIRLRALDLLYGMVS 365 (877)
T ss_pred HHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHhHHHHHH----Hhc--cCCchhHHHHHHHHHHHhh
Confidence 67777778889999999999999999999999998888775554 443 4578999999999999987
No 84
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.28 E-value=0.00011 Score=74.71 Aligned_cols=337 Identities=17% Similarity=0.214 Sum_probs=195.5
Q ss_pred hhhHHHHHHHHHHHcCCCcchHH---HHHHHHHhhcCCChhHHHHHHHHHHHHHhhcHHHH-HHhHHHHHHHHHhhCCCC
Q 001442 317 YSVGQECLDRLAIALGGNTIVPV---ASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVM-VKNLEQVLSMVLNSFRDP 392 (1076)
Q Consensus 317 ~~~a~~~l~~l~~~~~~~~~~~~---l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~-~~~l~~i~~~l~~~l~d~ 392 (1076)
..+|...++.++...+.+.++-. +-+.+.+++.+. -.+|..++-|+..++.--..-. ..+... +..+.+.-+.+
T Consensus 102 q~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmtd~-vevqcnaVgCitnLaT~d~nk~kiA~sGa-L~pltrLaksk 179 (550)
T KOG4224|consen 102 QCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMTDG-VEVQCNAVGCITNLATFDSNKVKIARSGA-LEPLTRLAKSK 179 (550)
T ss_pred hhhhhhhhccceeccCCceEEEeccChHHHHHHhcCCC-cEEEeeehhhhhhhhccccchhhhhhccc-hhhhHhhcccc
Confidence 34567777877777664443322 233455555543 3444445555555543211000 011222 22334455778
Q ss_pred ChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcC-CcccccCchHHHHHHHH
Q 001442 393 HPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENC-TPEILTPYLDGIVSKLL 471 (1076)
Q Consensus 393 ~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~aL~~l~~~~-~~~~l~~~l~~ll~~l~ 471 (1076)
+.+||+.+..++..+...-. .-+.-....-+|.|.+.+.. .++.||..++.++.++.-.- ..+.+..-=|.+++.|+
T Consensus 180 dirvqrnatgaLlnmThs~E-nRr~LV~aG~lpvLVsll~s-~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv 257 (550)
T KOG4224|consen 180 DIRVQRNATGALLNMTHSRE-NRRVLVHAGGLPVLVSLLKS-GDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALV 257 (550)
T ss_pred hhhHHHHHHHHHHHhhhhhh-hhhhhhccCCchhhhhhhcc-CChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHH
Confidence 89999999888888764322 11123456678999999998 99999999999999986432 12233344467899999
Q ss_pred HHhhcCchhHHHHHHHHHHHHHHHhHhhHHhhH-hhhHHHHHHHHhccCCchhhhhHHHHHHHHHHHHHHhchhhhh---
Q 001442 472 VLLQNGKQMVQEGALTALASVADSSQEHFQKYY-DAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFR--- 547 (1076)
Q Consensus 472 ~~l~~~~~~v~~~al~ai~~l~~~~~~~~~~~~-~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~g~~~~~--- 547 (1076)
.++++++++++-.+-.+++.++.-..-. .+.. ..-+|.+.++++.... .+.....-|+..++-.-+.+...
T Consensus 258 ~Lmd~~s~kvkcqA~lALrnlasdt~Yq-~eiv~ag~lP~lv~Llqs~~~----plilasVaCIrnisihplNe~lI~da 332 (550)
T KOG4224|consen 258 DLMDDGSDKVKCQAGLALRNLASDTEYQ-REIVEAGSLPLLVELLQSPMG----PLILASVACIRNISIHPLNEVLIADA 332 (550)
T ss_pred HHHhCCChHHHHHHHHHHhhhcccchhh-hHHHhcCCchHHHHHHhCcch----hHHHHHHHHHhhcccccCcccceecc
Confidence 9999999999999999999987643211 1111 2346777777754322 23334556776665443333221
Q ss_pred hhHHHHHHHHHHHhcCCCCCCChhhHHHHHHHHHHHHHhccCcccch-hhhhHHHHHhccCCCCccccCCCCCccccCCC
Q 001442 548 DDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYM-SVVMPPLLQSAQLKPDVTITSADSDNEIEDSD 626 (1076)
Q Consensus 548 ~~~~~ii~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l-~~i~~~ll~~~~~~~~~~~~~~d~d~~~~~~d 626 (1076)
.++..++.++ ... .++..+-.+.+.+-+++.........+. ...+|.+...+-..|
T Consensus 333 gfl~pLVrlL----~~~--dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~p----------------- 389 (550)
T KOG4224|consen 333 GFLRPLVRLL----RAG--DNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGP----------------- 389 (550)
T ss_pred cchhHHHHHH----hcC--CchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCC-----------------
Confidence 1223333332 211 2344566666777777765544433322 223444444442111
Q ss_pred CcccchhhcCCceeeecchhHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHhhhcccccCCHHHHHHHHHHHHHHHHHH
Q 001442 627 DDSMETITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSA 706 (1076)
Q Consensus 627 ~~~~~~~~~~~~~~~v~~~~~~~k~~A~~~l~~i~~~~~~~~~p~l~~~~~~l~~~l~~~~~~~vr~~a~~~l~~L~~~~ 706 (1076)
++ ..++.+||.+.-.+.++.+..|..+ .+++.+++...+ .++++|..|+.+|.++....
T Consensus 390 -------------vs-----vqseisac~a~Lal~d~~k~~lld~--gi~~iLIp~t~s-~s~Ev~gNaAaAL~Nlss~v 448 (550)
T KOG4224|consen 390 -------------VS-----VQSEISACIAQLALNDNDKEALLDS--GIIPILIPWTGS-ESEEVRGNAAAALINLSSDV 448 (550)
T ss_pred -------------hh-----HHHHHHHHHHHHHhccccHHHHhhc--CCcceeecccCc-cchhhcccHHHHHHhhhhhh
Confidence 11 1234556655556655555544322 356778887765 58999999999999997644
No 85
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.27 E-value=7.7e-06 Score=82.74 Aligned_cols=356 Identities=15% Similarity=0.150 Sum_probs=206.4
Q ss_pred hhHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhCCcchHhHHhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHc
Q 001442 143 ELLPFMFQCVSSDSVKLQESAFLIFAQLIINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAG 222 (1076)
Q Consensus 143 ~ll~~l~~~~~~~~~~~r~~al~~L~~l~~~~~~~l~~~~~~~~~~~l~p~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~ 222 (1076)
+-...++..+++.++.++..|-..++.+..+ +++..-...+..+=+.+++. . .+.-+++..+..|+..++.
T Consensus 85 es~epvl~llqs~d~~Iq~aa~~alGnlAVn----~enk~liv~l~Gl~~Li~qm----m-td~vevqcnaVgCitnLaT 155 (550)
T KOG4224|consen 85 ESNEPVLALLQSCDKCIQCAAGEALGNLAVN----MENKGLIVSLLGLDLLILQM----M-TDGVEVQCNAVGCITNLAT 155 (550)
T ss_pred hhhhHHHHHHhCcchhhhhhhhhhhccceec----cCCceEEEeccChHHHHHHh----c-CCCcEEEeeehhhhhhhhc
Confidence 3444555567777888777777777655221 11110011112222233332 2 3355677777888887775
Q ss_pred cCcHHHH-HhHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHhhcccchhhccchhhHHHHHHHHHHhhcCCCCCccc
Q 001442 223 TEPRFLR-RQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLW 301 (1076)
Q Consensus 223 ~~~~~~~-~~l~~l~~~l~~~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~dd~~~ 301 (1076)
......+ .+... +..+.... +..+..++..+.+.+..+...++....+++ ..-+|+++..+...+-|
T Consensus 156 ~d~nk~kiA~sGa-L~pltrLa--kskdirvqrnatgaLlnmThs~EnRr~LV~------aG~lpvLVsll~s~d~d--- 223 (550)
T KOG4224|consen 156 FDSNKVKIARSGA-LEPLTRLA--KSKDIRVQRNATGALLNMTHSRENRRVLVH------AGGLPVLVSLLKSGDLD--- 223 (550)
T ss_pred cccchhhhhhccc-hhhhHhhc--ccchhhHHHHHHHHHHHhhhhhhhhhhhhc------cCCchhhhhhhccCChh---
Confidence 4322211 11222 22333333 345778899999999888764221111111 22456666666533211
Q ss_pred cCCCCCCcccCCCCchhhHHHHHHHHHHHcC-C---CcchHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhcHHHHHHh
Q 001442 302 HSAETEDEDAGESSNYSVGQECLDRLAIALG-G---NTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKN 377 (1076)
Q Consensus 302 ~~~~~e~~d~~e~~~~~~a~~~l~~l~~~~~-~---~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~ 377 (1076)
.+..+...+..++..-. . -+.-|.++|.+...+.+.+.+++.-|-.+|+.++........-.
T Consensus 224 --------------vqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv 289 (550)
T KOG4224|consen 224 --------------VQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIV 289 (550)
T ss_pred --------------HHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHH
Confidence 23333344443332110 0 02234567777778889999999999999999986543211101
Q ss_pred HHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcc
Q 001442 378 LEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPE 457 (1076)
Q Consensus 378 l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~aL~~l~~~~~~~ 457 (1076)
-..-+|.+++.++++....--+...|+..++-+-..+.. -.-..++..|...|....+..++.+|...|.+++......
T Consensus 290 ~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~l-I~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n 368 (550)
T KOG4224|consen 290 EAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEVL-IADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHN 368 (550)
T ss_pred hcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCcccc-eecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhh
Confidence 112357788888888766666777788777654332210 1122455667777776346679999999999998755432
Q ss_pred cccCc-hHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHhHhhHHhhH--hhhHHHHHHHHhccCCchhhhhHHHHHHHH
Q 001442 458 ILTPY-LDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYY--DAVMPFLKAILVNATDKSNRMLRAKSMECI 534 (1076)
Q Consensus 458 ~l~~~-l~~ll~~l~~~l~~~~~~v~~~al~ai~~l~~~~~~~~~~~~--~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l 534 (1076)
...+ =..-+|.+..++.+.+..+++..-.|++.++..- .+..++ ..++|.|.+.. +.+...+|+.+.+++
T Consensus 369 -~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~d--~~k~~lld~gi~~iLIp~t----~s~s~Ev~gNaAaAL 441 (550)
T KOG4224|consen 369 -VSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALND--NDKEALLDSGIIPILIPWT----GSESEEVRGNAAAAL 441 (550)
T ss_pred -hHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhcc--ccHHHHhhcCCcceeeccc----CccchhhcccHHHHH
Confidence 1222 2356889999999999999999999999887643 233333 24677777653 345567888888888
Q ss_pred HHHHHHh
Q 001442 535 SLVGMAV 541 (1076)
Q Consensus 535 ~~i~~~~ 541 (1076)
+.+...+
T Consensus 442 ~Nlss~v 448 (550)
T KOG4224|consen 442 INLSSDV 448 (550)
T ss_pred Hhhhhhh
Confidence 8776544
No 86
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.27 E-value=0.0014 Score=74.33 Aligned_cols=442 Identities=16% Similarity=0.171 Sum_probs=228.1
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHcc--CCCHHHHHHHHHHHHHhcccCCCCcccCCCHhHH
Q 001442 24 FETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQR--SPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQ 101 (1076)
Q Consensus 24 l~~lL~~~~s~d~~~r~~Ae~~L~~~~~~~p~~~~~~L~~il~~--~~~~~~R~~a~v~Lk~~i~~~~~~~w~~l~~~~~ 101 (1076)
+-.++..+...|-+.+|-....+....+.+|+..+.+.--++.+ +.++.+|.+|...+-.. + -+...
T Consensus 51 F~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~a~~avnt~~kD~~d~np~iR~lAlrtm~~l--------~---v~~i~ 119 (734)
T KOG1061|consen 51 FPDVVKCMQTRDLELKKLVYLYLMNYAKGKPDLAILAVNTFLKDCEDPNPLIRALALRTMGCL--------R---VDKIT 119 (734)
T ss_pred hHHHHhhcccCCchHHHHHHHHHHHhhccCchHHHhhhhhhhccCCCCCHHHHHHHhhceeeE--------e---ehHHH
Confidence 34466666667778888888888887777887643333333333 67888998887443321 1 13344
Q ss_pred HHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhcccCCCCcchhHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhCCc
Q 001442 102 SSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLIINFIQCLTSS 181 (1076)
Q Consensus 102 ~~lk~~Ll~~l~~~~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~~~~~~~r~~al~~L~~l~~~~~~~l~~~ 181 (1076)
+.+-..|...+. +.++-+|+.++.+++.+........+=..+++.|..++.++++.+...|+.+|..+...=- +.
T Consensus 120 ey~~~Pl~~~l~-d~~~yvRktaa~~vakl~~~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~----~~ 194 (734)
T KOG1061|consen 120 EYLCDPLLKCLK-DDDPYVRKTAAVCVAKLFDIDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHP----SV 194 (734)
T ss_pred HHHHHHHHHhcc-CCChhHHHHHHHHHHHhhcCChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCC----CC
Confidence 556666777776 6799999999999988876543323456688899999999999999999999877721100 00
Q ss_pred chHhHHhhhHHH---------------HHHHHHHHHhC------------------CCHHHHHHHHHHHHHHHccCcHHH
Q 001442 182 ADRDRFQDLLPL---------------MMRTLTESLNN------------------GNEATAQEALELLIELAGTEPRFL 228 (1076)
Q Consensus 182 ~~~~~~~~l~p~---------------~l~~l~~~~~~------------------~~~~~~~~~~~~l~~l~~~~~~~~ 228 (1076)
.....-..++.. +++.+...... .++.+...+...+..+....+..-
T Consensus 195 ~~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~~ 274 (734)
T KOG1061|consen 195 NLLELNPQLINKLLEALNECTEWGQIFILDCLAEYVPKDSREAEDICERLTPRLQHANSAVVLSAVKVILQLVKYLKQVN 274 (734)
T ss_pred CcccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCchhHHHHHHHhhhhhccCCcceEeehHHHHHHHHHHHHHHH
Confidence 000000011111 12222211111 111111111111111111111110
Q ss_pred HHhHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHhhcccchhhccchhhHHHHHHHHHHhhcCCCCCccccCCCCCC
Q 001442 229 RRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETED 308 (1076)
Q Consensus 229 ~~~l~~l~~~l~~~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~dd~~~~~~~~e~ 308 (1076)
...+..+-+.+..++.. ..++...++.=+.-+.. ..|. +...-+...+ ..+ .||.
T Consensus 275 ~~~~~K~~~pl~tlls~---~~e~qyvaLrNi~lil~---~~p~-------~~~~~~~~Ff--~ky--nDPi-------- 329 (734)
T KOG1061|consen 275 ELLFKKVAPPLVTLLSS---ESEIQYVALRNINLILQ---KRPE-------ILKVEIKVFF--CKY--NDPI-------- 329 (734)
T ss_pred HHHHHHhcccceeeecc---cchhhHHHHhhHHHHHH---hChH-------HHHhHhHeee--eec--CCch--------
Confidence 11111111111112211 11223333222222222 0111 1110000000 000 1110
Q ss_pred cccCCCCchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhh
Q 001442 309 EDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNS 388 (1076)
Q Consensus 309 ~d~~e~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~ 388 (1076)
.....-.+++..++. +..++.++.-+.+.-..-|...-..++.++|.++....+. ...++.++..
T Consensus 330 ------YvK~eKleil~~la~----~~nl~qvl~El~eYatevD~~fvrkaIraig~~aik~e~~-----~~cv~~lLel 394 (734)
T KOG1061|consen 330 ------YVKLEKLEILIELAN----DANLAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS-----NDCVSILLEL 394 (734)
T ss_pred ------hhHHHHHHHHHHHhh----HhHHHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh-----hhhHHHHHHH
Confidence 011224456666653 3455566776776666677777778999999988755432 5567777777
Q ss_pred CCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHH
Q 001442 389 FRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVS 468 (1076)
Q Consensus 389 l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~aL~~l~~~~~~~~l~~~l~~ll~ 468 (1076)
++-....|.+.++..+..+....+. ....+++.+...+..-.+|+.|.+..|.++...+.++. .+.++.
T Consensus 395 l~~~~~yvvqE~~vvi~dilRkyP~-----~~~~vv~~l~~~~~sl~epeak~amiWilg~y~~~i~~------a~elL~ 463 (734)
T KOG1061|consen 395 LETKVDYVVQEAIVVIRDILRKYPN-----KYESVVAILCENLDSLQEPEAKAALIWILGEYAERIEN------ALELLE 463 (734)
T ss_pred HhhcccceeeehhHHHHhhhhcCCC-----chhhhhhhhcccccccCChHHHHHHHHHHhhhhhccCc------HHHHHH
Confidence 7644444444555555555544432 23566677766666556788888888999988777652 345667
Q ss_pred HHHHHhhcCchhHHHHHHHHHHHHHHHhHhhHHhhHhhhHHHHHHHHhccCCchhhhhHHHHHHHHHHHH
Q 001442 469 KLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVG 538 (1076)
Q Consensus 469 ~l~~~l~~~~~~v~~~al~ai~~l~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~i~ 538 (1076)
.++.-+.+....|+-..+.+.-.+--..+..-...+..+++. .. .+.+...+|.+++.-...+.
T Consensus 464 ~f~en~~dE~~~Vql~LLta~ik~Fl~~p~~tq~~l~~vL~~---~~---~d~~~~dlrDr~l~Y~RlLs 527 (734)
T KOG1061|consen 464 SFLENFKDETAEVQLELLTAAIKLFLKKPTETQELLQGVLPL---AT---ADTDNPDLRDRGLIYWRLLS 527 (734)
T ss_pred HHHhhcccchHHHHHHHHHHHHHHHhcCCccHHHHHHHHHhh---hh---ccccChhhhhhHHHHHHHhh
Confidence 777777777777776555555443333232222222222221 11 12334467777765544443
No 87
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=98.25 E-value=0.0031 Score=70.26 Aligned_cols=236 Identities=14% Similarity=0.176 Sum_probs=143.5
Q ss_pred CcccccCchHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHhHhhHHhhHhhhHHHHHHHHhc-cCCchhhhhHHHHHHH
Q 001442 455 TPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVN-ATDKSNRMLRAKSMEC 533 (1076)
Q Consensus 455 ~~~~l~~~l~~ll~~l~~~l~~~~~~v~~~al~ai~~l~~~~~~~~~~~~~~i~~~L~~~l~~-~~~~~~~~lr~~a~~~ 533 (1076)
..+.+.|+.+.++..|+..++.+...--+....|+-.+....++...|+...+++.|..++.. ..++.+...-...+|+
T Consensus 16 ~~~di~p~~~~ll~~Lf~~i~~~~s~ENeylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNPsnP~FnHylFEs 95 (435)
T PF03378_consen 16 SKADIQPFAQQLLQNLFALIEKPGSAENEYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNPSNPRFNHYLFES 95 (435)
T ss_dssp -GGGTTCCHHHHHHHHHHHHHTT-STC-HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS---HHHHHHHHHH
T ss_pred CHHHhhhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHH
Confidence 345688999999999999998766555677888999999989999999999999988887754 2345556666778999
Q ss_pred HHHHHHHhchhh---hhhhHHHHHHHHHHHhcCCCCCCChhhHHHHHHHHHHHHHhc-cCcccchhhhhHHHHHhccCCC
Q 001442 534 ISLVGMAVGKDK---FRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLG-QDFLPYMSVVMPPLLQSAQLKP 609 (1076)
Q Consensus 534 l~~i~~~~g~~~---~~~~~~~ii~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~l~~i~~~ll~~~~~~~ 609 (1076)
++.+.+.+.+.. ...+-..+++.+..+...++ .+..+|+++.++.+.+... ..+.+....++|.++.-.
T Consensus 96 i~~lir~~~~~~~~~v~~~E~~L~P~f~~ILq~dV---~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~---- 168 (435)
T PF03378_consen 96 IGALIRFVCEADPEAVSQFEEALFPPFQEILQQDV---QEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPA---- 168 (435)
T ss_dssp HHHHHHHS-GGGHH---HHHHHHHHHHHHHHHTT----TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGG----
T ss_pred HHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcc----
Confidence 999987654221 22333344555544333322 2467888888888877765 456556666666665221
Q ss_pred CccccCCCCCccccCCCCcccchhhcCCceeeecchhHHHHHHHHHHHHHHHHHhhhccc--ccHHHHHHHhhhcccccC
Q 001442 610 DVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFF--PWIDQVAPTLVPLLKFYF 687 (1076)
Q Consensus 610 ~~~~~~~d~d~~~~~~d~~~~~~~~~~~~~~~v~~~~~~~k~~A~~~l~~i~~~~~~~~~--p~l~~~~~~l~~~l~~~~ 687 (1076)
-|+. .+.+ -...++|..+.+..+..+. ++++.++..+.+++....
T Consensus 169 -------------------lWe~-----------~gni---PalvrLL~a~i~k~~~~i~~~~~l~~iLgvFQkLi~sk~ 215 (435)
T PF03378_consen 169 -------------------LWER-----------RGNI---PALVRLLQAYIKKDPSFIVANNQLEPILGVFQKLIASKA 215 (435)
T ss_dssp -------------------GGGS-----------TTTH---HHHHHHHHHHHHHHGGG----S-CHHHHHHHHHHHT-TT
T ss_pred -------------------hhcc-----------CCCc---CcHHHHHHHHHHhCchhhcchhhHHHHHHHHHHHHCCCC
Confidence 1221 1111 1345678888888777664 678888888888887543
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHccCCcHH
Q 001442 688 HEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVEALHKEPDTE 745 (1076)
Q Consensus 688 ~~~vr~~a~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~ 745 (1076)
++ ..+...|..++..+.. ....+++..++..++..+++.....
T Consensus 216 ~D---~~gF~LL~~iv~~~p~------------~~l~~yl~~I~~lll~RLq~skT~k 258 (435)
T PF03378_consen 216 ND---HYGFDLLESIVENLPP------------EALEPYLKQIFTLLLTRLQSSKTEK 258 (435)
T ss_dssp CH---HHHHHHHHHHHHHS-H------------HHHGGGHHHHHHHHHHHHHHC--HH
T ss_pred cc---hHHHHHHHHHHHHCCH------------HHHHHHHHHHHHHHHHHHhhCCcHH
Confidence 33 3466666666665422 2244455556666666666543333
No 88
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.21 E-value=0.0074 Score=68.72 Aligned_cols=144 Identities=21% Similarity=0.315 Sum_probs=104.3
Q ss_pred HHHHHHHhhcCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhh
Q 001442 340 ASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQF 419 (1076)
Q Consensus 340 l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 419 (1076)
+++-+..+....|-..++-...=+...+.+-++.- .-.++.++....|++|.+|..|...++.+-- ...
T Consensus 50 lF~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~a----~~avnt~~kD~~d~np~iR~lAlrtm~~l~v-------~~i 118 (734)
T KOG1061|consen 50 LFPDVVKCMQTRDLELKKLVYLYLMNYAKGKPDLA----ILAVNTFLKDCEDPNPLIRALALRTMGCLRV-------DKI 118 (734)
T ss_pred hhHHHHhhcccCCchHHHHHHHHHHHhhccCchHH----HhhhhhhhccCCCCCHHHHHHHhhceeeEee-------hHH
Confidence 44445556666667777777776776666554311 1246788888999999999999888776532 345
Q ss_pred hhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHhHh
Q 001442 420 HPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQE 498 (1076)
Q Consensus 420 ~~~ll~~l~~~l~~~~~~~v~~~a~~aL~~l~~~~~~~~l~~~l~~ll~~l~~~l~~~~~~v~~~al~ai~~l~~~~~~ 498 (1076)
...+...+.++++| .++.||..+..+...+...-. +.. .-..+++.|..++.+.++.|-..|+.++..+.+.-..
T Consensus 119 ~ey~~~Pl~~~l~d-~~~yvRktaa~~vakl~~~~~-~~~--~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~ 193 (734)
T KOG1061|consen 119 TEYLCDPLLKCLKD-DDPYVRKTAAVCVAKLFDIDP-DLV--EDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPS 193 (734)
T ss_pred HHHHHHHHHHhccC-CChhHHHHHHHHHHHhhcCCh-hhc--cccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCC
Confidence 56677888899999 899999999888888765433 211 2346778888888899999999999999999887653
No 89
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=98.18 E-value=5.7e-05 Score=88.77 Aligned_cols=208 Identities=14% Similarity=0.227 Sum_probs=165.9
Q ss_pred CcchHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhcH-HHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhc
Q 001442 334 NTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCA-KVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLG 412 (1076)
Q Consensus 334 ~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~-~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~ 412 (1076)
..+.+.+-+.+...+.+++|+.|..|+..+..+.+... +....+...+...+-..+.|.|..|-..++.++..++..++
T Consensus 248 ~di~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr 327 (815)
T KOG1820|consen 248 VDILSKITKNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLR 327 (815)
T ss_pred hhhhhhcChHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcc
Confidence 45667777778888889999999999999998887665 22223444455566666789999999999999999999998
Q ss_pred hhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCchhHHHHHHHHHHHH
Q 001442 413 PDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASV 492 (1076)
Q Consensus 413 ~~~~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~aL~~l~~~~~~~~l~~~l~~ll~~l~~~l~~~~~~v~~~al~ai~~l 492 (1076)
..+ ..|...++|.++..+.+ ....++..+..++..++... .+..+.+.+...+.+.++.++......++..
T Consensus 328 ~~~-~~~~~~v~p~lld~lke-kk~~l~d~l~~~~d~~~ns~-------~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~ 398 (815)
T KOG1820|consen 328 PLF-RKYAKNVFPSLLDRLKE-KKSELRDALLKALDAILNST-------PLSKMSEAILEALKGKNPQIKGECLLLLDRK 398 (815)
T ss_pred hhh-HHHHHhhcchHHHHhhh-ccHHHHHHHHHHHHHHHhcc-------cHHHHHHHHHHHhcCCChhhHHHHHHHHHHH
Confidence 887 68999999999999999 88899999999998888732 3567788889999999999999999999988
Q ss_pred HHHhHh--hHHhhHhhhHHHHHHHHhccCCchhhhhHHHHHHHHHHHHHHhchhhhhhhHHHHH
Q 001442 493 ADSSQE--HFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVM 554 (1076)
Q Consensus 493 ~~~~~~--~~~~~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~g~~~~~~~~~~ii 554 (1076)
....+. .+..-...+.|.+.....+ .+..+|..+.++++.+.+.+|.+.|..++..+-
T Consensus 399 ~~~~~~~~~~~~t~~~l~p~~~~~~~D----~~~~VR~Aa~e~~~~v~k~~Ge~~~~k~L~~~~ 458 (815)
T KOG1820|consen 399 LRKLGPKTVEKETVKTLVPHLIKHIND----TDKDVRKAALEAVAAVMKVHGEEVFKKLLKDLD 458 (815)
T ss_pred HhhcCCcCcchhhHHHHhHHHhhhccC----CcHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhc
Confidence 887773 2234556778887776433 345689999999999999999776666655443
No 90
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=98.17 E-value=0.001 Score=71.89 Aligned_cols=288 Identities=15% Similarity=0.098 Sum_probs=167.0
Q ss_pred HHHHHHHHHHhcccCCCCcccCCCHhHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhcccCCCCcchhHHHHHHhhc
Q 001442 74 RAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVS 153 (1076)
Q Consensus 74 R~~a~v~Lk~~i~~~~~~~w~~l~~~~~~~lk~~Ll~~l~~~~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~ 153 (1076)
-|.|.++|-+.+..- -.-+++...++|.-|-.++. +.-..|.-.+|..+..++............++.|...++
T Consensus 240 nq~a~V~lvr~~~~l-----l~~n~q~~~q~rpfL~~wls-~k~emV~lE~Ar~v~~~~~~nv~~~~~~~~vs~L~~fL~ 313 (898)
T COG5240 240 NQLAGVLLVRATVEL-----LKENSQALLQLRPFLNSWLS-DKFEMVFLEAARAVCALSEENVGSQFVDQTVSSLRTFLK 313 (898)
T ss_pred cchhheehHHHHHHH-----HHhChHHHHHHHHHHHHHhc-CcchhhhHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHh
Confidence 345555555555432 12245666777777777775 445677788888888887654343455667788888899
Q ss_pred CCCHHHHHHHHHHHHHHH--------------HHHHHhhC------------CcchHhHHhhhHHHHHHHHHHHHhCCCH
Q 001442 154 SDSVKLQESAFLIFAQLI--------------INFIQCLT------------SSADRDRFQDLLPLMMRTLTESLNNGNE 207 (1076)
Q Consensus 154 ~~~~~~r~~al~~L~~l~--------------~~~~~~l~------------~~~~~~~~~~l~p~~l~~l~~~~~~~~~ 207 (1076)
+.+...|-.|+++|..+. .+++..-. .+.... -+..+++.+...+.+-..
T Consensus 314 s~rv~~rFsA~Riln~lam~~P~kv~vcN~evEsLIsd~Nr~IstyAITtLLKTGt~e----~idrLv~~I~sfvhD~SD 389 (898)
T COG5240 314 STRVVLRFSAMRILNQLAMKYPQKVSVCNKEVESLISDENRTISTYAITTLLKTGTEE----TIDRLVNLIPSFVHDMSD 389 (898)
T ss_pred cchHHHHHHHHHHHHHHHhhCCceeeecChhHHHHhhcccccchHHHHHHHHHcCchh----hHHHHHHHHHHHHHhhcc
Confidence 999999999999999882 12211110 000111 122333333333333233
Q ss_pred HHHHHHHHHHHHHHccCcHHHHHhHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHhhcccchhhccchhhHHHHHHH
Q 001442 208 ATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAI 287 (1076)
Q Consensus 208 ~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~ 287 (1076)
.....++.++..++-..|..-.. ++.++...+.+. ..-+.+..+++.+....++ .|.. -+..+..
T Consensus 390 ~FKiI~ida~rsLsl~Fp~k~~s----~l~FL~~~L~~e-Gg~eFK~~~Vdaisd~~~~---~p~s-------kEraLe~ 454 (898)
T COG5240 390 GFKIIAIDALRSLSLLFPSKKLS----YLDFLGSSLLQE-GGLEFKKYMVDAISDAMEN---DPDS-------KERALEV 454 (898)
T ss_pred CceEEeHHHHHHHHhhCcHHHHH----HHHHHHHHHHhc-ccchHHHHHHHHHHHHHhh---CchH-------HHHHHHH
Confidence 34444555555555555544333 444444444332 3445677778887777773 4422 2445555
Q ss_pred HHHhhcCCCCCccccCCCCCCcccCCCCchhhHHHHHHHHHHHcCCCcchHH-HHHHHHHhhcCCChhHHHHHHHHHHHH
Q 001442 288 LMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPV-ASEQLPAYLAAPEWQKHHAALIALAQI 366 (1076)
Q Consensus 288 l~~~l~~~~dd~~~~~~~~e~~d~~e~~~~~~a~~~l~~l~~~~~~~~~~~~-l~~~l~~~l~~~~~~~r~aal~~l~~l 366 (1076)
++..+.+. + ...++..+|.-|++.-| +.--|. .+.++-..+--++--+|-||+.||+.+
T Consensus 455 LC~fIEDc-----------------e--y~~I~vrIL~iLG~EgP-~a~~P~~yvrhIyNR~iLEN~ivRsaAv~aLskf 514 (898)
T COG5240 455 LCTFIEDC-----------------E--YHQITVRILGILGREGP-RAKTPGKYVRHIYNRLILENNIVRSAAVQALSKF 514 (898)
T ss_pred HHHHHhhc-----------------c--hhHHHHHHHHHhcccCC-CCCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 55543111 1 34567777887776654 221121 222222222234668999999999998
Q ss_pred HhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhh
Q 001442 367 AEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLS 408 (1076)
Q Consensus 367 ~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~ 408 (1076)
+-...+... -..+...+.++++|.+..||..|..++..+-
T Consensus 515 ~ln~~d~~~--~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~ 554 (898)
T COG5240 515 ALNISDVVS--PQSVENALKRCLNDQDDEVRDRASFLLRNMR 554 (898)
T ss_pred ccCcccccc--HHHHHHHHHHHhhcccHHHHHHHHHHHHhhh
Confidence 876654222 1245667778899999999999998877653
No 91
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=98.17 E-value=0.0033 Score=66.75 Aligned_cols=530 Identities=14% Similarity=0.132 Sum_probs=258.3
Q ss_pred hhhHHHHHHHHHHHHHh----cccCCCCcchhHHH--------HH-HhhcCCCHHHHHHHHHHHHHHHHHHHHhhC---C
Q 001442 117 AKSISKKLCDTVSELAS----NILPENGWPELLPF--------MF-QCVSSDSVKLQESAFLIFAQLIINFIQCLT---S 180 (1076)
Q Consensus 117 ~~~vr~~~~~~i~~ia~----~~~~~~~w~~ll~~--------l~-~~~~~~~~~~r~~al~~L~~l~~~~~~~l~---~ 180 (1076)
...||..+..++.+..+ ..+- +.|.-++|. |+ -.++++++..|..|+++++.++..--+.+. +
T Consensus 9 ~akvr~~al~~~~~~~~~~~~~~~y-gyw~~~~pd~~~~g~p~l~~l~lkd~~~~~ra~alqv~~~~l~gsk~fls~a~~ 87 (728)
T KOG4535|consen 9 QAKVRQGALVCFLSTIKSIEKKVLY-GYWSAFIPDTPELGSPSLMTLTLKDPSPKTRACALQVLSAILEGSKQFLSVAED 87 (728)
T ss_pred HHHHHhhHHHHHHHHHhhhhhhhhh-ceeeeecCCCCCCCCceeeEEecCCCChhHHHHHHHHHHHHHHhhHHHHHHHhc
Confidence 34455555555544433 2222 688887753 22 245788999999999999888544222222 1
Q ss_pred cchHhHHhh---hH----HHHHHHHHHHH-hCCCHHHHHHHHHHHHHHHccCcHH-H-HHhHHHHHHHHHHHhcCCCcch
Q 001442 181 SADRDRFQD---LL----PLMMRTLTESL-NNGNEATAQEALELLIELAGTEPRF-L-RRQLVDVVGSMLQIAEAESLEE 250 (1076)
Q Consensus 181 ~~~~~~~~~---l~----p~~l~~l~~~~-~~~~~~~~~~~~~~l~~l~~~~~~~-~-~~~l~~l~~~l~~~~~~~~~~~ 250 (1076)
.. ...|.+ .+ -..-..+...+ ....+.+...+++||..++.+.|.. + ...+-.+...+-..+.. .|.
T Consensus 88 ~~-~~~ftpf~v~~a~si~~~~r~l~~~l~~e~~~~~~tq~~kcla~lv~~~p~~~l~~~~~~~~~~~ik~~i~~--~d~ 164 (728)
T KOG4535|consen 88 TS-DHAFTPFSVMIACSIRELHRCLLLALVAESSSQTVTQIIKCLANLVSNAPYDRLKLSLLTKVWNQIKPYIRH--KDV 164 (728)
T ss_pred cC-CcCCCchHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhc--CCC
Confidence 11 111111 11 11111121111 2345677888999999999887642 1 12333445544455543 467
Q ss_pred hHHHHHHHHHHHHHHhhcccchhhccchhhHHHHHHHHH--Hhhc-CCCCCccccCC----CCCCcccCCCCchhhH--H
Q 001442 251 GTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILM--SMLL-DIEDDPLWHSA----ETEDEDAGESSNYSVG--Q 321 (1076)
Q Consensus 251 ~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~--~~l~-~~~dd~~~~~~----~~e~~d~~e~~~~~~a--~ 321 (1076)
.+|..++-.+..++... + ..|-+...+..-. ..+. .....++|... +.+.| -++.+..... .
T Consensus 165 ~v~vs~l~~~~~~v~t~--~------~~pei~~~~~~~~s~~n~~~~h~s~~~~~~~l~~~~~~~e-~~~~~~~~~~~~~ 235 (728)
T KOG4535|consen 165 NVRVSSLTLLGAIVSTH--A------PLPEVQLLLQQPCSSSNSATPHLSPPDWWKKLPAGPSLEE-TSVSSPKGSSEPC 235 (728)
T ss_pred ChhhHHHHHHHHHHhcC--C------CCHHHHHHhcCCCccccccCCCCCChHHHHhcCCCchhhh-hccCCccCCCCCc
Confidence 78999999888888741 1 1111111111000 0000 01122344321 10110 0000000000 0
Q ss_pred HHHHH---HHHHcCCCcchHHHHHHHHHhhcC--CChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhH
Q 001442 322 ECLDR---LAIALGGNTIVPVASEQLPAYLAA--PEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRV 396 (1076)
Q Consensus 322 ~~l~~---l~~~~~~~~~~~~l~~~l~~~l~~--~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~v 396 (1076)
.++.. +....+.+.. .......++.+ .-...|-.++..|..++.+.+ ....++-++...|..++.+..|.+
T Consensus 236 ~~i~~~~~i~~~~~~~s~---~~~~~~~~~~~~~~ps~~rle~~qvl~~~a~~~~-~~~~~~~~l~RvI~~~~~~~~p~~ 311 (728)
T KOG4535|consen 236 WLIRLCISIVVLPKEDSC---SGSDAGSAAGSTYEPSPMRLEALQVLTLLARYFS-MTQAYLMELGRVICKCMGEADPSI 311 (728)
T ss_pred ceeeeeeeeeecCCcccc---chhhHHhhhcCccCCchhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHccCCCCChHH
Confidence 00000 0000000000 00001111111 112456777777777777654 344677788899999999999999
Q ss_pred HHHHHHHHHHhhhhhchhHH-hhhhhhhHHH-HH---------hhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHH
Q 001442 397 RWAAINAIGQLSTDLGPDLQ-NQFHPQVLPA-LA---------GAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDG 465 (1076)
Q Consensus 397 r~~a~~~l~~l~~~~~~~~~-~~~~~~ll~~-l~---------~~l~~~~~~~v~~~a~~aL~~l~~~~~~~~l~~~l~~ 465 (1076)
...+..++..+...+..... +..-..+... +. ...-|...+..+.++|.++.++....... +..--..
T Consensus 312 ~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~~~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~-lpn~~~T 390 (728)
T KOG4535|consen 312 QLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWTMMLNGPLPRALYDSEHPTLQASACDALSSILPEAFSN-LPNDRQT 390 (728)
T ss_pred HHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHHHHccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcC-CCCcchh
Confidence 99999988887765541110 0111111111 11 11112234556788899988886432211 2111112
Q ss_pred HHHHH-HHHhhcCchhHHHHHHHHHHHHHHHhHhh-HHhhHhhhHHHHHHHHhccCCchhhhhHHHHHHHHHHHHHHhch
Q 001442 466 IVSKL-LVLLQNGKQMVQEGALTALASVADSSQEH-FQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGK 543 (1076)
Q Consensus 466 ll~~l-~~~l~~~~~~v~~~al~ai~~l~~~~~~~-~~~~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~g~ 543 (1076)
..+.+ .-+-++.+.-++..|+.+++..+-+.+-. ...+.......+...+.+ .....|.++.-++|.|..++-.
T Consensus 391 ~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d----~~ln~r~KaawtlgnITdAL~~ 466 (728)
T KOG4535|consen 391 LCITFLLGCNDSKNRLVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLED----KSLNVRAKAAWSLGNITDALIV 466 (728)
T ss_pred hhHHHHhcccchHHHHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhh----HhHhHHHHHHHHhhhhHHHHHc
Confidence 22222 22224445667878888877665443321 112333333333333321 1233577777788888766531
Q ss_pred h--hhhhhHHHHHH----HHHHHhcCCCCCCChhhHHHHHHHHHHHHHhccCcccchhhhhHHHHHhccCCCCccccCCC
Q 001442 544 D--KFRDDAKQVME----VLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSAD 617 (1076)
Q Consensus 544 ~--~~~~~~~~ii~----~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~i~~~ll~~~~~~~~~~~~~~d 617 (1076)
. ........+.. .++..-.......+.++.-++.+++++.+.+..-..+-+..+++.-+..+-.
T Consensus 467 ~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~---------- 536 (728)
T KOG4535|consen 467 NMPTPDSFQERFSGLLLLKMLRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALIS---------- 536 (728)
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhccc----------
Confidence 1 11112223333 2222111111123457777788888776655433233222222221111100
Q ss_pred CCccccCCCCcccchhhcCCceeeecchhHHHHHHHHHHHHHHHHH--hhhcccccHHHHHHHhhhcccccCCHHHHHHH
Q 001442 618 SDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATACNMLCCYADE--LKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAA 695 (1076)
Q Consensus 618 ~d~~~~~~d~~~~~~~~~~~~~~~v~~~~~~~k~~A~~~l~~i~~~--~~~~~~p~l~~~~~~l~~~l~~~~~~~vr~~a 695 (1076)
+. .......-|=.||.++|.+.++ .+-+-.|+.+.+++.+..++.+..|-.||..|
T Consensus 537 ---------------------~v-~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~A 594 (728)
T KOG4535|consen 537 ---------------------TV-LTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSCKNFKVRIRA 594 (728)
T ss_pred ---------------------ce-ecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHhccceEeehh
Confidence 00 0011223345689999999876 34445788899999998888877788899888
Q ss_pred HHHHH
Q 001442 696 VSAMP 700 (1076)
Q Consensus 696 ~~~l~ 700 (1076)
+.+|.
T Consensus 595 A~aL~ 599 (728)
T KOG4535|consen 595 AAALS 599 (728)
T ss_pred hhhhc
Confidence 88753
No 92
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.15 E-value=0.0055 Score=69.85 Aligned_cols=156 Identities=15% Similarity=0.146 Sum_probs=111.7
Q ss_pred HHHHHHHHHhhCCCC-ChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCc
Q 001442 378 LEQVLSMVLNSFRDP-HPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTP 456 (1076)
Q Consensus 378 l~~i~~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~aL~~l~~~~~~ 456 (1076)
++.++|.|+..|+++ |+.+..-||+||..+++.+++....-.....+|.++..|..-+--+|.+.+..||..+-...+.
T Consensus 209 v~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~ 288 (1051)
T KOG0168|consen 209 VKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPK 288 (1051)
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccH
Confidence 568899999999876 6789999999999999999876633334468899988776546678999999999999887775
Q ss_pred ccccCchHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHhHhhHHhhHhhhHHHHHHHHhccCCchhhhhHHHHHHHHHH
Q 001442 457 EILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISL 536 (1076)
Q Consensus 457 ~~l~~~l~~ll~~l~~~l~~~~~~v~~~al~ai~~l~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~ 536 (1076)
.++..- . +...+..++=-...+++.|+...+.++..+..+-..|+-..+|.|..++....+ .....+.-|+..
T Consensus 289 AiL~AG--~-l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f~~v~ealPlL~~lLs~~D~----k~ies~~ic~~r 361 (1051)
T KOG0168|consen 289 AILQAG--A-LSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEFHFVMEALPLLTPLLSYQDK----KPIESVCICLTR 361 (1051)
T ss_pred HHHhcc--c-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhhccc----hhHHHHHHHHHH
Confidence 544321 1 222333333334467888999888888887765445777888999999876422 222334457777
Q ss_pred HHHH
Q 001442 537 VGMA 540 (1076)
Q Consensus 537 i~~~ 540 (1076)
++..
T Consensus 362 i~d~ 365 (1051)
T KOG0168|consen 362 IADG 365 (1051)
T ss_pred HHHh
Confidence 7644
No 93
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=98.09 E-value=0.00047 Score=73.13 Aligned_cols=203 Identities=12% Similarity=0.180 Sum_probs=142.4
Q ss_pred HHHHHHHhhcCCChhHHHHHHH-HHHHHHhhcHHHHHHhHHHHHHHHHhhCCC-CChhHHHHHHHHHHHhhhhhchhHHh
Q 001442 340 ASEQLPAYLAAPEWQKHHAALI-ALAQIAEGCAKVMVKNLEQVLSMVLNSFRD-PHPRVRWAAINAIGQLSTDLGPDLQN 417 (1076)
Q Consensus 340 l~~~l~~~l~~~~~~~r~aal~-~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~~~~~ 417 (1076)
+...+.+.-.+.....|+.|+. ..+.++++-...-.+++.+|+..++.-|.| .+...|.-|+..|+.+++.-+..+ .
T Consensus 288 v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l-~ 366 (516)
T KOG2956|consen 288 VADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARL-F 366 (516)
T ss_pred HHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhh-h
Confidence 3333444334556677888887 455666665556668999999999999998 788999999999999998765555 5
Q ss_pred hhhhhhHHHHHhhccCCCChhHHHHHH-HHHHHhhhcCCcccccCchHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHh
Q 001442 418 QFHPQVLPALAGAMDDFQNPRVQAHAA-SAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSS 496 (1076)
Q Consensus 418 ~~~~~ll~~l~~~l~~~~~~~v~~~a~-~aL~~l~~~~~~~~l~~~l~~ll~~l~~~l~~~~~~v~~~al~ai~~l~~~~ 496 (1076)
++....+..+++.-.| +.+.|-..|. .++..+....+.. .+..+..++.+.+...-..++.++..+++..
T Consensus 367 DstE~ai~K~Leaa~d-s~~~v~~~Aeed~~~~las~~P~~--------~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l 437 (516)
T KOG2956|consen 367 DSTEIAICKVLEAAKD-SQDEVMRVAEEDCLTTLASHLPLQ--------CIVNISPLILTADEPRAVAVIKMLTKLFERL 437 (516)
T ss_pred chHHHHHHHHHHHHhC-CchhHHHHHHHHHHHHHHhhCchh--------HHHHHhhHHhcCcchHHHHHHHHHHHHHhhc
Confidence 7777778888888778 5554444444 4444444443321 2333334444455555556777888888876
Q ss_pred Hh-hHHhhHhhhHHHHHHHHhccCCchhhhhHHHHHHHHHHHHHHhchhhhhhhHHHHHHH
Q 001442 497 QE-HFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEV 556 (1076)
Q Consensus 497 ~~-~~~~~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~g~~~~~~~~~~ii~~ 556 (1076)
.. .+.+.++.+.|.+++.... ....+|..++-|+-.+...+|.+.+.||+.++-..
T Consensus 438 ~~EeL~~ll~diaP~~iqay~S----~SS~VRKtaVfCLVamv~~vG~~~mePhL~~Lt~s 494 (516)
T KOG2956|consen 438 SAEELLNLLPDIAPCVIQAYDS----TSSTVRKTAVFCLVAMVNRVGMEEMEPHLEQLTSS 494 (516)
T ss_pred CHHHHHHhhhhhhhHHHHHhcC----chHHhhhhHHHhHHHHHHHHhHHhhhhHhhhccHH
Confidence 64 5677888899988887654 33468999999999999999988999998765443
No 94
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=98.07 E-value=0.051 Score=63.45 Aligned_cols=156 Identities=15% Similarity=0.211 Sum_probs=117.7
Q ss_pred hHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHH
Q 001442 337 VPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQ 416 (1076)
Q Consensus 337 ~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~ 416 (1076)
++.+++.+...+.+.|...|+-..+=+-..++..++.+ --.++.+.+-++|+|+.+|..|+.+++.+-.
T Consensus 53 mssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~----lLavNti~kDl~d~N~~iR~~AlR~ls~l~~------- 121 (757)
T COG5096 53 MSSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELA----LLAVNTIQKDLQDPNEEIRGFALRTLSLLRV------- 121 (757)
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHH----HHHHHHHHhhccCCCHHHHHHHHHHHHhcCh-------
Confidence 56677777666668888888888888888888776422 2346888999999999999999999888642
Q ss_pred hhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHH-HHHHHHHHhhcCchhHHHHHHHHHHHHHHH
Q 001442 417 NQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDG-IVSKLLVLLQNGKQMVQEGALTALASVADS 495 (1076)
Q Consensus 417 ~~~~~~ll~~l~~~l~~~~~~~v~~~a~~aL~~l~~~~~~~~l~~~l~~-ll~~l~~~l~~~~~~v~~~al~ai~~l~~~ 495 (1076)
.+.+..+++.+.+++.| +++.||..|+.|+..+.+.-. +. |.+. ....+..++.+.++.+...|+.++..+...
T Consensus 122 ~el~~~~~~~ik~~l~d-~~ayVRk~Aalav~kly~ld~-~l---~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 122 KELLGNIIDPIKKLLTD-PHAYVRKTAALAVAKLYRLDK-DL---YHELGLIDILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred HHHHHHHHHHHHHHccC-CcHHHHHHHHHHHHHHHhcCH-hh---hhcccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 46688899999999999 999999999999999876533 21 2233 566677788899999999888888877654
Q ss_pred hHhhHHhhHhhhHHHH
Q 001442 496 SQEHFQKYYDAVMPFL 511 (1076)
Q Consensus 496 ~~~~~~~~~~~i~~~L 511 (1076)
...+|+..+...+
T Consensus 197 ---~a~~~~~~~~~~i 209 (757)
T COG5096 197 ---LAHGYSLEVILRI 209 (757)
T ss_pred ---hhhhHHHHHHHHh
Confidence 3344555444433
No 95
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=98.03 E-value=1.5e-05 Score=72.82 Aligned_cols=111 Identities=23% Similarity=0.251 Sum_probs=88.8
Q ss_pred HHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhh-hhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccc
Q 001442 381 VLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHP-QVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEIL 459 (1076)
Q Consensus 381 i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~-~ll~~l~~~l~~~~~~~v~~~a~~aL~~l~~~~~~~~l 459 (1076)
+++.+...+.++++.+|..++++++.++....... ..+.. .++|.+++.+.+ ++++++..++++|.+++...+....
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~-~~~~~~~~i~~l~~~l~~-~~~~v~~~a~~~L~~l~~~~~~~~~ 85 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNI-QAVVEAGGLPALVQLLKS-EDEEVVKAALWALRNLAAGPEDNKL 85 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHH-HHHHHCCChHHHHHHHhC-CCHHHHHHHHHHHHHHccCcHHHHH
Confidence 56777888889999999999999999997643333 33344 899999999999 8999999999999999987542211
Q ss_pred cCchHHHHHHHHHHhhcCchhHHHHHHHHHHHHH
Q 001442 460 TPYLDGIVSKLLVLLQNGKQMVQEGALTALASVA 493 (1076)
Q Consensus 460 ~~~l~~ll~~l~~~l~~~~~~v~~~al~ai~~l~ 493 (1076)
...-.++++.+...+++.+..+++.++.+++.++
T Consensus 86 ~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 86 IVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 1122357899999999999999999999998875
No 96
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=98.00 E-value=0.00078 Score=71.52 Aligned_cols=190 Identities=15% Similarity=0.214 Sum_probs=133.2
Q ss_pred CHHHHHHHHH-HHHHHHccCcHHHHHhHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHhhcccchhhccchhhHHHH
Q 001442 206 NEATAQEALE-LLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRL 284 (1076)
Q Consensus 206 ~~~~~~~~~~-~l~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~l 284 (1076)
..+.+..++. +..-+++..-....+|+..|+..+++++.+. .++..|..|+..+..++++ .|. ++..+.+-.
T Consensus 300 ~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~-~~~~~k~laLrvL~~ml~~---Q~~---~l~DstE~a 372 (516)
T KOG2956|consen 300 RASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDS-EDEIIKKLALRVLREMLTN---QPA---RLFDSTEIA 372 (516)
T ss_pred chhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccc-hhhHHHHHHHHHHHHHHHh---chH---hhhchHHHH
Confidence 4556777766 4445555656667789999999999999753 4677899999999999984 332 334455555
Q ss_pred HHHHHHhhcCCCCCccccCCCCCCcccCCCCchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhcCCChhHHHHHHHHHH
Q 001442 285 FAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALA 364 (1076)
Q Consensus 285 ~~~l~~~l~~~~dd~~~~~~~~e~~d~~e~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~ 364 (1076)
+..+++.-.+.. +...+.++..|+..++++.| ..-+..+.+.+ ...|...--+++..+.
T Consensus 373 i~K~Leaa~ds~----------------~~v~~~Aeed~~~~las~~P-~~~I~~i~~~I----lt~D~~~~~~~iKm~T 431 (516)
T KOG2956|consen 373 ICKVLEAAKDSQ----------------DEVMRVAEEDCLTTLASHLP-LQCIVNISPLI----LTADEPRAVAVIKMLT 431 (516)
T ss_pred HHHHHHHHhCCc----------------hhHHHHHHHHHHHHHHhhCc-hhHHHHHhhHH----hcCcchHHHHHHHHHH
Confidence 555554433221 11245566678888888887 34443344433 3355555566777888
Q ss_pred HHHhhcH-HHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhc-hhHHhhhhhhhH
Q 001442 365 QIAEGCA-KVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLG-PDLQNQFHPQVL 424 (1076)
Q Consensus 365 ~l~~~~~-~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~-~~~~~~~~~~ll 424 (1076)
.+.+... +.+...++++.|.++++.++.+..||.+|..||-.+...++ ..+ .+|+.++-
T Consensus 432 kl~e~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~~~m-ePhL~~Lt 492 (516)
T KOG2956|consen 432 KLFERLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGMEEM-EPHLEQLT 492 (516)
T ss_pred HHHhhcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhHHhh-hhHhhhcc
Confidence 8888765 56778899999999999999999999999999999998887 444 56665543
No 97
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=97.96 E-value=0.00019 Score=68.39 Aligned_cols=136 Identities=23% Similarity=0.288 Sum_probs=96.6
Q ss_pred hhHHHHHHHHHHHHHhcccCCCCcchhHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhCCc-------chHhHHhhh
Q 001442 118 KSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLIINFIQCLTSS-------ADRDRFQDL 190 (1076)
Q Consensus 118 ~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~~~~~~~r~~al~~L~~l~~~~~~~l~~~-------~~~~~~~~l 190 (1076)
+.||+++|.+++.|+.+++| ..||++++.+.+.+++ ++.....++.+|..+...+....... .-...+...
T Consensus 2 ~~i~~kl~~~l~~i~~~~~P-~~Wp~~l~~l~~~~~~-~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~~~ 79 (148)
T PF08389_consen 2 PFIRNKLAQVLAEIAKRDWP-QQWPDFLEDLLQLLQS-SPQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALRSN 79 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-TTSTTHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHCh-hhCchHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHH
Confidence 56899999999999999999 7999999999999887 57778889999988866665421111 112334455
Q ss_pred HHHHHHHHHHHHhCCC----HHHHHHHHHHHHHHHccCcHHHHHhHHHHHHHHHHHhcCCCcchhHHHHHHHHH
Q 001442 191 LPLMMRTLTESLNNGN----EATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFV 260 (1076)
Q Consensus 191 ~p~~l~~l~~~~~~~~----~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~r~~al~~l 260 (1076)
.|.+++.+.+.++... ++....+++++...+.-.+...... ..+++.++..+.+ +.++..|++++
T Consensus 80 ~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~~i~~-~~~l~~~~~~l~~----~~~~~~A~~cl 148 (148)
T PF08389_consen 80 SPDILEILSQILSQSSSEANEELVKAALKCLKSWISWIPIELIIN-SNLLNLIFQLLQS----PELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HHHHHS-SSHHHHHHHHTTS----CCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHHHhcc-HHHHHHHHHHcCC----HHHHHHHHHhC
Confidence 6777777777665433 7788999999999887443222211 2477777777743 34488888765
No 98
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=97.94 E-value=0.027 Score=56.98 Aligned_cols=341 Identities=16% Similarity=0.147 Sum_probs=188.0
Q ss_pred HHHHHHHHHHHhcccCCCCcchhHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhCCcchHhHHhh-hHHHHHHHHHH
Q 001442 122 KKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLIINFIQCLTSSADRDRFQD-LLPLMMRTLTE 200 (1076)
Q Consensus 122 ~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~~~~~~~r~~al~~L~~l~~~~~~~l~~~~~~~~~~~-l~p~~l~~l~~ 200 (1076)
.....++.++.+...+..--|+++|.|+..+..++..++..++..++.++... ++........ .-..+++.+..
T Consensus 61 tlcVscLERLfkakegahlapnlmpdLQrGLiaddasVKiLackqigcilEdc-----DtnaVseillvvNaeilklild 135 (524)
T KOG4413|consen 61 TLCVSCLERLFKAKEGAHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDC-----DTNAVSEILLVVNAEILKLILD 135 (524)
T ss_pred hhHHHHHHHHHhhccchhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcC-----chhhHHHHHHHhhhhHHHHHHH
Confidence 33566677777766665667999999999999999888888887776664221 1111111111 11345566666
Q ss_pred HHhCCCHHHHHHHHHHHHHHHccCcHHHHHhHHHHHHH-----HH-HHhcCCCcchhHHHHHHHHHHHHHHhhcccchhh
Q 001442 201 SLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGS-----ML-QIAEAESLEEGTRHLAIEFVITLAEARERAPGMM 274 (1076)
Q Consensus 201 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~-----l~-~~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~ 274 (1076)
++...|.++...+.+.+..++.. |.-+ ..+++. +- .-+.. ..++-.|...++.+..+.+. .|...
T Consensus 136 cIggeddeVAkAAiesikrialf-paal----eaiFeSellDdlhlrnlaa-kcndiaRvRVleLIieifSi---Spesa 206 (524)
T KOG4413|consen 136 CIGGEDDEVAKAAIESIKRIALF-PAAL----EAIFESELLDDLHLRNLAA-KCNDIARVRVLELIIEIFSI---SPESA 206 (524)
T ss_pred HHcCCcHHHHHHHHHHHHHHHhc-HHHH----HHhcccccCChHHHhHHHh-hhhhHHHHHHHHHHHHHHhc---CHHHH
Confidence 77788999999999999988642 2222 222221 00 00000 12345677777777777663 33211
Q ss_pred ccchhhHHHHHHHHHHhhcCCCCCccccCCCCCCcccCCCCchhhHHHHHHHHHHHcCCCcchH--HHHHHHHHhhc--C
Q 001442 275 RKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVP--VASEQLPAYLA--A 350 (1076)
Q Consensus 275 ~~~~~~~~~l~~~l~~~l~~~~dd~~~~~~~~e~~d~~e~~~~~~a~~~l~~l~~~~~~~~~~~--~l~~~l~~~l~--~ 350 (1076)
... --+.++..+..-|+..+| .-++..+.+....++..-.+.++++ .+++.+...+. +
T Consensus 207 nec--kkSGLldlLeaElkGteD----------------tLVianciElvteLaeteHgreflaQeglIdlicnIIsGad 268 (524)
T KOG4413|consen 207 NEC--KKSGLLDLLEAELKGTED----------------TLVIANCIELVTELAETEHGREFLAQEGLIDLICNIISGAD 268 (524)
T ss_pred hHh--hhhhHHHHHHHHhcCCcc----------------eeehhhHHHHHHHHHHHhhhhhhcchhhHHHHHHHHhhCCC
Confidence 111 113466666555554322 1133345556666665433344443 25555655554 5
Q ss_pred CChhHHHHHHHHHHHHHhh------cHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhch-hHHhhhhhhh
Q 001442 351 PEWQKHHAALIALAQIAEG------CAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGP-DLQNQFHPQV 423 (1076)
Q Consensus 351 ~~~~~r~aal~~l~~l~~~------~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~-~~~~~~~~~l 423 (1076)
+++..+.-+++..+.+... .++.+-..+...+.-.+......+|....+|..++|.+...... +..-..-+.-
T Consensus 269 sdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGSnteGadlllkTgppa 348 (524)
T KOG4413|consen 269 SDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEGADLLLKTGPPA 348 (524)
T ss_pred CCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcchhHHHhccCChH
Confidence 6777777777777765432 12222233344455556666777888999999999999876533 2211222333
Q ss_pred HHHHHhhccCCCChhHHHHHHHHHHHhhhcCCc--ccccC--chHH----------------HHHHHHHHhhcCchhHHH
Q 001442 424 LPALAGAMDDFQNPRVQAHAASAVLNFSENCTP--EILTP--YLDG----------------IVSKLLVLLQNGKQMVQE 483 (1076)
Q Consensus 424 l~~l~~~l~~~~~~~v~~~a~~aL~~l~~~~~~--~~l~~--~l~~----------------ll~~l~~~l~~~~~~v~~ 483 (1076)
...++...-|.+...-+..+..+|..+...... +.+.. -... -+..+...++.+.++++-
T Consensus 349 aehllarafdqnahakqeaaihaLaaIagelrlkpeqitDgkaeerlrclifdaaaqstkldPleLFlgilqQpfpEihc 428 (524)
T KOG4413|consen 349 AEHLLARAFDQNAHAKQEAAIHALAAIAGELRLKPEQITDGKAEERLRCLIFDAAAQSTKLDPLELFLGILQQPFPEIHC 428 (524)
T ss_pred HHHHHHHHhcccccchHHHHHHHHHHhhccccCChhhccccHHHHHHHHHHHHHHhhccCCChHHHHHHHHcCCChhhHH
Confidence 334444333413333457778888888765431 11111 0000 112233455666778888
Q ss_pred HHHHHHHHHHH
Q 001442 484 GALTALASVAD 494 (1076)
Q Consensus 484 ~al~ai~~l~~ 494 (1076)
.++..+..++.
T Consensus 429 AalktfTAiaa 439 (524)
T KOG4413|consen 429 AALKTFTAIAA 439 (524)
T ss_pred HHHHHHHHHHc
Confidence 88877777765
No 99
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.93 E-value=0.024 Score=64.01 Aligned_cols=146 Identities=10% Similarity=0.192 Sum_probs=94.0
Q ss_pred CcchHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhcHH-HHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhc
Q 001442 334 NTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAK-VMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLG 412 (1076)
Q Consensus 334 ~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~-~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~ 412 (1076)
+.+-..++..+...+-+.+-..++--++-+..+-...++ .+.+.+--+...+-+-|++||..||...++.+..+-+
T Consensus 52 e~~p~Llm~IiRfvlps~~~elKKLly~ywE~vPKt~~dgkl~~EMILvcna~RkDLQHPNEyiRG~TLRFLckLkE--- 128 (948)
T KOG1058|consen 52 EDLPSLLMTIIRFVLPSRNHELKKLLYYYWELVPKTDSDGKLLHEMILVCNAYRKDLQHPNEYIRGSTLRFLCKLKE--- 128 (948)
T ss_pred CCchHHHHHHhheeeccCchHHHHHHHHHHHHccccCCCcccHHHHHHHHHHHhhhccCchHhhcchhhhhhhhcCc---
Confidence 444333333334444455555555444433333222221 1222333456788889999999999999888777643
Q ss_pred hhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCchhHHHHHHHHHHH
Q 001442 413 PDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALAS 491 (1076)
Q Consensus 413 ~~~~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~aL~~l~~~~~~~~l~~~l~~ll~~l~~~l~~~~~~v~~~al~ai~~ 491 (1076)
.+.+++++|.+..+|.. .+..||..|.-|+..+..... .+-|-.+.++...+..= .++.-+++|+-.+-.
T Consensus 129 ----~ELlepl~p~IracleH-rhsYVRrNAilaifsIyk~~~--~L~pDapeLi~~fL~~e--~DpsCkRNAFi~L~~ 198 (948)
T KOG1058|consen 129 ----PELLEPLMPSIRACLEH-RHSYVRRNAILAIFSIYKNFE--HLIPDAPELIESFLLTE--QDPSCKRNAFLMLFT 198 (948)
T ss_pred ----HHHhhhhHHHHHHHHhC-cchhhhhhhheeehhHHhhhh--hhcCChHHHHHHHHHhc--cCchhHHHHHHHHHh
Confidence 35688999999999999 999999999999999887754 25677777777665443 344456666555443
No 100
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.93 E-value=1.6e-05 Score=60.23 Aligned_cols=55 Identities=33% Similarity=0.495 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHhhHHhHHHHHHhhccCCChhHHhhhhHHHHHH
Q 001442 858 AEERRIAICIFDDVAEQCREAALKYYETYLPFLLEACNDENQDVRQAAVYGLGVC 912 (1076)
Q Consensus 858 ~~~r~~al~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~vr~~a~~~lg~l 912 (1076)
+.+|..|+.+|+.+.+.++....+|.+.++|.++..++|+++.||.+|+++||.+
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 3578899999999999999999999999999999999999999999999999975
No 101
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.92 E-value=0.032 Score=62.12 Aligned_cols=257 Identities=18% Similarity=0.200 Sum_probs=150.7
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHccCcHHHH------HhHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHhhc
Q 001442 195 MRTLTESLNNGNEATAQEALELLIELAGTEPRFLR------RQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARE 268 (1076)
Q Consensus 195 l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~------~~l~~l~~~l~~~~~~~~~~~~~r~~al~~l~~l~~~~~ 268 (1076)
.+...+.+.+.++++|..+++++.-....+|.... .+....+..+...+. +.+-.+|..|.+.++.+-..
T Consensus 236 Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~D~aF~~vC~~v~--D~sl~VRV~AaK~lG~~~~v-- 311 (823)
T KOG2259|consen 236 YSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEEKLKDAAFSSVCRAVR--DRSLSVRVEAAKALGEFEQV-- 311 (823)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhhhhHHHHHHHHHHHHh--cCceeeeehHHHHhchHHHh--
Confidence 34445566788899999999999988877742211 233444554555443 34567888888887776442
Q ss_pred ccchhhccchhhHHHHHHH-HHH----hhcCC------------CCCccccCCCC-CCcccCCCCchhhHHHHHHHHHHH
Q 001442 269 RAPGMMRKLPQFINRLFAI-LMS----MLLDI------------EDDPLWHSAET-EDEDAGESSNYSVGQECLDRLAIA 330 (1076)
Q Consensus 269 ~~~~~~~~~~~~~~~l~~~-l~~----~l~~~------------~dd~~~~~~~~-e~~d~~e~~~~~~a~~~l~~l~~~ 330 (1076)
...++.+.+.. ++. +-... ....+|+.+-. |++|+++.+... .+ .
T Consensus 312 --------See~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~advpsee~d~~~~siI~-sG--------A 374 (823)
T KOG2259|consen 312 --------SEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWNADVPSEEDDEEEESIIP-SG--------A 374 (823)
T ss_pred --------HHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCccccccCchhhcccccccccc-cc--------c
Confidence 11233332221 111 10000 01223432211 111111111110 00 0
Q ss_pred cCCCcchHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhh
Q 001442 331 LGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTD 410 (1076)
Q Consensus 331 ~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~ 410 (1076)
+| .+ ...+.++-..+|.||+..++.++-..+++ -..-+.++...++|+...||--|..+|..++.+
T Consensus 375 CG--A~--------VhGlEDEf~EVR~AAV~Sl~~La~ssP~F----A~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~ 440 (823)
T KOG2259|consen 375 CG--AL--------VHGLEDEFYEVRRAAVASLCSLATSSPGF----AVRALDFLVDMFNDEIEVVRLKAIFALTMISVH 440 (823)
T ss_pred cc--ee--------eeechHHHHHHHHHHHHHHHHHHcCCCCc----HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 11 11 11233444689999999999999876542 234567888889999999999999999999987
Q ss_pred hchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCchhHHHHHHHHHH
Q 001442 411 LGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALA 490 (1076)
Q Consensus 411 ~~~~~~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~aL~~l~~~~~~~~l~~~l~~ll~~l~~~l~~~~~~v~~~al~ai~ 490 (1076)
+ ..-+..++.++..|.| .++++|.+.-.. +..+.-.. ...+..++..++..+...+ .-|..++.|++
T Consensus 441 l------~i~eeql~~il~~L~D-~s~dvRe~l~el----L~~~~~~d-~~~i~m~v~~lL~~L~kyP-qDrd~i~~cm~ 507 (823)
T KOG2259|consen 441 L------AIREEQLRQILESLED-RSVDVREALREL----LKNARVSD-LECIDMCVAHLLKNLGKYP-QDRDEILRCMG 507 (823)
T ss_pred h------eecHHHHHHHHHHHHh-cCHHHHHHHHHH----HHhcCCCc-HHHHHHHHHHHHHHhhhCC-CCcHHHHHHHH
Confidence 4 2344667778888889 888898765444 33333221 2345666777777766443 23567889999
Q ss_pred HHHHHhHhh
Q 001442 491 SVADSSQEH 499 (1076)
Q Consensus 491 ~l~~~~~~~ 499 (1076)
.++..-+.-
T Consensus 508 ~iGqnH~~l 516 (823)
T KOG2259|consen 508 RIGQNHRRL 516 (823)
T ss_pred HHhccChhh
Confidence 988876654
No 102
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.92 E-value=0.026 Score=62.87 Aligned_cols=246 Identities=17% Similarity=0.180 Sum_probs=152.6
Q ss_pred cchhHHHHHHHHHHHHHHhhcccchhhccchhhHHHHHHHHHHhhcCCCCCccccCCCCCCcccCCCCchhhHHHHHHHH
Q 001442 248 LEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRL 327 (1076)
Q Consensus 248 ~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~dd~~~~~~~~e~~d~~e~~~~~~a~~~l~~l 327 (1076)
.+..+|..|++.+..+.+. -++ -..++....+.|.+. +..++++|.+++-.+
T Consensus 210 ~D~~Vrt~A~eglL~L~eg--------~kL---~~~~Y~~A~~~lsD~-----------------~e~VR~aAvqlv~v~ 261 (823)
T KOG2259|consen 210 QDFRVRTHAVEGLLALSEG--------FKL---SKACYSRAVKHLSDD-----------------YEDVRKAAVQLVSVW 261 (823)
T ss_pred CCcchHHHHHHHHHhhccc--------ccc---cHHHHHHHHHHhcch-----------------HHHHHHHHHHHHHHH
Confidence 3567788888877777651 011 122333444444321 112566666666666
Q ss_pred HHHcCC--------CcchHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhcHHHHHHhHH--------------------
Q 001442 328 AIALGG--------NTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLE-------------------- 379 (1076)
Q Consensus 328 ~~~~~~--------~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~-------------------- 379 (1076)
++..+. .......+..+...+.+-.|.+|--|..+||.+-....+.+.+.++
T Consensus 262 gn~~p~~~e~e~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l 341 (823)
T KOG2259|consen 262 GNRCPAPLERESEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKAL 341 (823)
T ss_pred HhcCCCcccchhhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHH
Confidence 655521 1233444555555666667777777777776654433332222221
Q ss_pred --------------------------HHH-----HHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHH
Q 001442 380 --------------------------QVL-----SMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALA 428 (1076)
Q Consensus 380 --------------------------~i~-----~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~ 428 (1076)
.|+ -.++.+|.|+--.||.+|...++.++... | .+....+..|.
T Consensus 342 ~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ss-P----~FA~~aldfLv 416 (823)
T KOG2259|consen 342 YSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSS-P----GFAVRALDFLV 416 (823)
T ss_pred HhcCCcccCccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCC-C----CcHHHHHHHHH
Confidence 111 23455667777889999999999998643 2 34556777788
Q ss_pred hhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHhHhhHHhhHhhhH
Q 001442 429 GAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVM 508 (1076)
Q Consensus 429 ~~l~~~~~~~v~~~a~~aL~~l~~~~~~~~l~~~l~~ll~~l~~~l~~~~~~v~~~al~ai~~l~~~~~~~~~~~~~~i~ 508 (1076)
..+.| ....||..|..+|..+..+.. + -+..++.++..|.+.+.++|+.+...++..=-. -..-++.++
T Consensus 417 DMfND-E~~~VRL~ai~aL~~Is~~l~---i---~eeql~~il~~L~D~s~dvRe~l~elL~~~~~~----d~~~i~m~v 485 (823)
T KOG2259|consen 417 DMFND-EIEVVRLKAIFALTMISVHLA---I---REEQLRQILESLEDRSVDVREALRELLKNARVS----DLECIDMCV 485 (823)
T ss_pred HHhcc-HHHHHHHHHHHHHHHHHHHhe---e---cHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC----cHHHHHHHH
Confidence 88888 888999999999999988743 2 255678888889999999998877776652111 123455666
Q ss_pred HHHHHHHhccCCchhhhhHHHHHHHHHHHHHHhc
Q 001442 509 PFLKAILVNATDKSNRMLRAKSMECISLVGMAVG 542 (1076)
Q Consensus 509 ~~L~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~g 542 (1076)
..+...+.....+ |...+.|++.|++.-+
T Consensus 486 ~~lL~~L~kyPqD-----rd~i~~cm~~iGqnH~ 514 (823)
T KOG2259|consen 486 AHLLKNLGKYPQD-----RDEILRCMGRIGQNHR 514 (823)
T ss_pred HHHHHHhhhCCCC-----cHHHHHHHHHHhccCh
Confidence 6666666654333 3346679999987766
No 103
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.91 E-value=0.073 Score=59.80 Aligned_cols=139 Identities=12% Similarity=0.269 Sum_probs=94.5
Q ss_pred HhhcCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHH
Q 001442 346 AYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLP 425 (1076)
Q Consensus 346 ~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~ 425 (1076)
+.++++.+..+..+.+.++.+.+...+ .++-++..+.+-|...|+.-..-|+.|++.+.+. ++.+.+..++-.
T Consensus 81 ~LLss~kysEKqIGYl~is~L~n~n~d----l~klvin~iknDL~srn~~fv~LAL~~I~niG~r---e~~ea~~~DI~K 153 (938)
T KOG1077|consen 81 NLLSSNKYSEKQIGYLFISLLLNENSD----LMKLVINSIKNDLSSRNPTFVCLALHCIANIGSR---EMAEAFADDIPK 153 (938)
T ss_pred HHhhcCCccHHHHhHHHHHHHHhcchH----HHHHHHHHHHhhhhcCCcHHHHHHHHHHHhhccH---hHHHHhhhhhHH
Confidence 466777888899999999998876654 3445677788888888888888889998887642 333445555544
Q ss_pred HHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHhH
Q 001442 426 ALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQ 497 (1076)
Q Consensus 426 ~l~~~l~~~~~~~v~~~a~~aL~~l~~~~~~~~l~~~l~~ll~~l~~~l~~~~~~v~~~al~ai~~l~~~~~ 497 (1076)
.|...- ..+.|+..|.-+|-.+.+..+ +.+.+ +.-..+++.+|++.+..|-..+.+.|..++..-+
T Consensus 154 lLvS~~---~~~~vkqkaALclL~L~r~sp-Dl~~~--~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p 219 (938)
T KOG1077|consen 154 LLVSGS---SMDYVKQKAALCLLRLFRKSP-DLVNP--GEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNP 219 (938)
T ss_pred HHhCCc---chHHHHHHHHHHHHHHHhcCc-cccCh--hhHHHHHHHHhCccccceeeehHHHHHHHHHcCC
Confidence 333322 346788888888888888855 33332 3456778888888876665555555555555433
No 104
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=97.89 E-value=0.082 Score=59.89 Aligned_cols=208 Identities=13% Similarity=0.093 Sum_probs=106.2
Q ss_pred HHHHHHHHHHHhhhhhH--h-hHHhHHHHHHhhccCCCh--hHHhhhhHHHHHHHhhcCC-CchHHHHHHHHHHHHhhcC
Q 001442 864 AICIFDDVAEQCREAAL--K-YYETYLPFLLEACNDENQ--DVRQAAVYGLGVCAEFGGS-VVKPLVGEALSRLNVVIRH 937 (1076)
Q Consensus 864 al~~l~~l~~~~~~~~~--~-~~~~ll~~l~~~l~~~~~--~vr~~a~~~lg~l~~~~~~-~~~~~~~~il~~L~~~l~~ 937 (1076)
+.-.+..++-+++..+. + |..-+..+...++.+++- .-+..++..+-.++-..++ ....|.|-........+..
T Consensus 702 ~~~al~nfityG~~ef~~~~~y~~i~~eI~~~~l~sE~n~l~D~~~vc~i~e~l~Ln~rd~Ll~qy~plfi~vags~l~~ 781 (970)
T COG5656 702 VADALDNFITYGKTEFMDAGIYGSICSEISKLCLCSEENFLEDFIGVCRIIESLILNIRDELLSQYLPLFISVAGSGLKM 781 (970)
T ss_pred HHHHHHHHHHhCccccccccchhHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHHHHccchhHHhhhHHHHHHHhhhhhc
Confidence 34566667777655432 2 556666677777776654 4455666666666666665 4445555444444323322
Q ss_pred CCCCChhhhhHHHHHHHHHH-------HHHhhcCCCCCHhhHHHHHHhhCCCCCcHHHHHHHHHHHHHHHhhc-CCcccC
Q 001442 938 PNALQPENLMAYDNAVSALG-------KICQFHRDSIDAAQVVPAWLNCLPIKGDLIEAKIVHEQLCSMVERS-DSDLLG 1009 (1076)
Q Consensus 938 ~~~~~~~~~~~~~na~~al~-------~i~~~~~~~~~~~~~l~~~l~~lp~~~d~~e~~~~~~~l~~li~~~-~~~~~~ 1009 (1076)
-+........+.+-+++++. ++++.++ .+..++..|++..|.-.-.....-+.-++..++... .+....
T Consensus 782 ~dElg~~sv~aleliinnli~~P~eTLqiLe~qg---~l~~FF~~wf~~ipkfkrvhdkKLsvlaIltii~l~~v~~~~e 858 (970)
T COG5656 782 IDELGPASVYALELIINNLILRPKETLQILEEQG---YLQSFFEKWFSQIPKFKRVHDKKLSVLAILTIIRLQEVGALPE 858 (970)
T ss_pred cccccchhhhHHHHHHHHHhcChHHHHHHHHHcC---cHHHHHHHHHhcCcchhhhhhhHhHHHHHHHHHHhcccccchh
Confidence 21111112233333333321 0111111 366788999999886333344444444455555322 111111
Q ss_pred cCcCchhhHHHHHHHHhcC-----------CCCC----------------------------------CHHHHHHHHHHH
Q 001442 1010 PNHQYLPKIVSVFAEILCG-----------KDLA----------------------------------TEQTLSRIVNLL 1044 (1076)
Q Consensus 1010 ~~~~~l~~i~~~~~~~l~~-----------~~~~----------------------------------~~~~~~~~~~~l 1044 (1076)
+.-.++..++-.+...|++ .++. ..+-..-+...+
T Consensus 859 ~lv~nLg~vlv~l~~sLPeAir~rake~d~e~f~e~dlt~ey~e~vD~~D~~etfileEDplfeT~LDqvdpf~~f~ef~ 938 (970)
T COG5656 859 LLVHNLGEVLVALVTSLPEAIRLRAKEKDDEDFPEPDLTTEYDECVDASDISETFILEEDPLFETELDQVDPFGYFSEFL 938 (970)
T ss_pred hhhhHHHHHHHHHHHhhHHHHHHHHhhcccCCCCCcccchhhhccccccchhhhhhhcccchhhhhhhhcchHHHHHHHH
Confidence 1101355544444333321 0000 012344556666
Q ss_pred HHHHhhCChhhHHHHHhcCCHHHHHHHHhhh
Q 001442 1045 KQLQQTLPPATLASTWSSLQPQQQLALQSIL 1075 (1076)
Q Consensus 1045 ~~l~~~~~~~~~~~~~~~l~~~~~~~l~~~~ 1075 (1076)
..++..-|+- .+.+++.|.+.+|+-||.++
T Consensus 939 ~nLq~~s~~~-yekIi~~Lt~s~qdslq~il 968 (970)
T COG5656 939 SNLQPASGTY-YEKIISTLTDSQQDSLQTIL 968 (970)
T ss_pred HhCCCCCchh-HHHHHHhcCHHHHHHHHHHh
Confidence 6666655554 99999999999999999875
No 105
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=97.82 E-value=0.073 Score=56.96 Aligned_cols=148 Identities=14% Similarity=0.187 Sum_probs=98.0
Q ss_pred cCCChhHHHHHHHHHHHHHhhcHH-HHHHhHHHHHH---------HHHhhCCCCChhHHHHHHHHHHHhhhhhchhH---
Q 001442 349 AAPEWQKHHAALIALAQIAEGCAK-VMVKNLEQVLS---------MVLNSFRDPHPRVRWAAINAIGQLSTDLGPDL--- 415 (1076)
Q Consensus 349 ~~~~~~~r~aal~~l~~l~~~~~~-~~~~~l~~i~~---------~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~--- 415 (1076)
.+...++|.+|+.++.......+. .+..|..-++| .+.-.|+|++++.|..|+..++++.+....-.
T Consensus 6 r~~~akvr~~al~~~~~~~~~~~~~~~ygyw~~~~pd~~~~g~p~l~~l~lkd~~~~~ra~alqv~~~~l~gsk~fls~a 85 (728)
T KOG4535|consen 6 RSYQAKVRQGALVCFLSTIKSIEKKVLYGYWSAFIPDTPELGSPSLMTLTLKDPSPKTRACALQVLSAILEGSKQFLSVA 85 (728)
T ss_pred hhHHHHHHhhHHHHHHHHHhhhhhhhhhceeeeecCCCCCCCCceeeEEecCCCChhHHHHHHHHHHHHHHhhHHHHHHH
Confidence 445678999999999988877653 23333333332 23346899999999999999888876432100
Q ss_pred -------Hhh-------hhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCccccc-CchHHHHHHHHHHhhcCchh
Q 001442 416 -------QNQ-------FHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILT-PYLDGIVSKLLVLLQNGKQM 480 (1076)
Q Consensus 416 -------~~~-------~~~~ll~~l~~~l~~~~~~~v~~~a~~aL~~l~~~~~~~~l~-~~l~~ll~~l~~~l~~~~~~ 480 (1076)
..+ ....+...++-.|.....+.+-.....+|..++.+.+-+.+. .++..++..+.+.+++.++.
T Consensus 86 ~~~~~~~ftpf~v~~a~si~~~~r~l~~~l~~e~~~~~~tq~~kcla~lv~~~p~~~l~~~~~~~~~~~ik~~i~~~d~~ 165 (728)
T KOG4535|consen 86 EDTSDHAFTPFSVMIACSIRELHRCLLLALVAESSSQTVTQIIKCLANLVSNAPYDRLKLSLLTKVWNQIKPYIRHKDVN 165 (728)
T ss_pred hccCCcCCCchHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence 011 122233334444443245667788889999998776533222 34566777888889999999
Q ss_pred HHHHHHHHHHHHHHHh
Q 001442 481 VQEGALTALASVADSS 496 (1076)
Q Consensus 481 v~~~al~ai~~l~~~~ 496 (1076)
|+-.++..++.++...
T Consensus 166 v~vs~l~~~~~~v~t~ 181 (728)
T KOG4535|consen 166 VRVSSLTLLGAIVSTH 181 (728)
T ss_pred hhhHHHHHHHHHHhcC
Confidence 9999999999988653
No 106
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.78 E-value=0.00011 Score=62.47 Aligned_cols=86 Identities=28% Similarity=0.427 Sum_probs=66.9
Q ss_pred HHHHHhh-cCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhh
Q 001442 342 EQLPAYL-AAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFH 420 (1076)
Q Consensus 342 ~~l~~~l-~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~ 420 (1076)
+.+.+.+ ++++|.+|..++.+|+.+.. +..++.+...++|+++.||..|+++++++..
T Consensus 2 ~~L~~~l~~~~~~~vr~~a~~~L~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~----------- 60 (88)
T PF13646_consen 2 PALLQLLQNDPDPQVRAEAARALGELGD----------PEAIPALIELLKDEDPMVRRAAARALGRIGD----------- 60 (88)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHCCTH----------HHHHHHHHHHHTSSSHHHHHHHHHHHHCCHH-----------
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcCC----------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----------
Confidence 4445555 78999999999999994321 2567888888899999999999999998741
Q ss_pred hhhHHHHHhhccCCCChhHHHHHHHHHH
Q 001442 421 PQVLPALAGAMDDFQNPRVQAHAASAVL 448 (1076)
Q Consensus 421 ~~ll~~l~~~l~~~~~~~v~~~a~~aL~ 448 (1076)
+..++.+.+.+.+.++..||..|..+|+
T Consensus 61 ~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 61 PEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 3577788888877456678999988874
No 107
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=97.77 E-value=0.00035 Score=65.93 Aligned_cols=126 Identities=20% Similarity=0.268 Sum_probs=94.8
Q ss_pred hhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCchhHHHHHHHHHHHH---HHHh
Q 001442 420 HPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASV---ADSS 496 (1076)
Q Consensus 420 ~~~ll~~l~~~l~~~~~~~v~~~a~~aL~~l~~~~~~~~l~~~l~~ll~~l~~~l~~~~~~v~~~al~ai~~l---~~~~ 496 (1076)
++.++|.++.+|.+ ....-+--|...+..+++..+.+.+.|.+++++..+...|++.++.+...++.++..+ ...+
T Consensus 36 y~~~Lpif~dGL~E-t~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~v 114 (183)
T PF10274_consen 36 YHHYLPIFFDGLRE-TEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMV 114 (183)
T ss_pred hhhHHHHHHhhhhc-cCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhh
Confidence 56899999999998 5444556677777788877444457899999999999999999999999999999999 7778
Q ss_pred HhhHHhhHhhhHHHHHHHHhccCC-------chhhhhHHHHHHHHHHHHHHhchhhh
Q 001442 497 QEHFQKYYDAVMPFLKAILVNATD-------KSNRMLRAKSMECISLVGMAVGKDKF 546 (1076)
Q Consensus 497 ~~~~~~~~~~i~~~L~~~l~~~~~-------~~~~~lr~~a~~~l~~i~~~~g~~~~ 546 (1076)
|+.+.||+.+++|.+.-......+ .....++..+.+++..+-+.-|++.|
T Consensus 115 G~aLvPyyrqLLp~ln~f~~k~~n~gd~i~y~~~~~~~dlI~etL~~lE~~GG~dA~ 171 (183)
T PF10274_consen 115 GEALVPYYRQLLPVLNLFKNKNVNLGDGIDYRKRKNLGDLIQETLELLERNGGPDAF 171 (183)
T ss_pred hHHHHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHhcChhHH
Confidence 999999999999998754433210 12233455555666666666665443
No 108
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=97.75 E-value=0.17 Score=59.12 Aligned_cols=237 Identities=15% Similarity=0.130 Sum_probs=163.9
Q ss_pred hHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHH
Q 001442 646 VLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQ 725 (1076)
Q Consensus 646 ~~~~k~~A~~~l~~i~~~~~~~~~p~l~~~~~~l~~~l~~~~~~~vr~~a~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~ 725 (1076)
..+.++.|+..+..+.+++-..-.|-..++...++.+++ ++++-..+++++.-+..-.....+...+.....-+-++
T Consensus 787 s~dls~~al~~l~Wv~KaLl~R~~~~s~~ia~klld~Ls---~~~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQR 863 (1030)
T KOG1967|consen 787 SLDLSEIALTVLAWVTKALLLRNHPESSEIAEKLLDLLS---GPSTGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQR 863 (1030)
T ss_pred CcchhhHHHHHHHHHHHHHHHcCCcccchHHHHHHHhcC---CccccchHHHhhHhhhccChHHhhhccccchhHHHHHH
Confidence 345567788888887776644445555556666666665 35666777777766654332222211111222346678
Q ss_pred HHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcCCCCChHhh
Q 001442 726 LSDFIIPALVEALHKEPDTEICASMLDSLNECIQISGPLLDEGQVRSIVDEIKQVITASSSRKRERAERAKAEDFDAEES 805 (1076)
Q Consensus 726 ~~~~i~~~l~~~l~~~~~~~~~~~~l~~l~~~i~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ed~d~~~~ 805 (1076)
++..++|.+.+.+.+. ....+.-.+.++..++..+.. +.+.+-++.+.++|-..+.. +|
T Consensus 864 fF~~ivP~l~~~~~t~-~~~~K~~yl~~LshVl~~vP~----~vllp~~~~LlPLLLq~Ls~----------~D------ 922 (1030)
T KOG1967|consen 864 FFCDIVPILVSKFETA-PGSQKHNYLEALSHVLTNVPK----QVLLPQFPMLLPLLLQALSM----------PD------ 922 (1030)
T ss_pred HHHhhHHHHHHHhccC-CccchhHHHHHHHHHHhcCCH----HhhccchhhHHHHHHHhcCC----------Cc------
Confidence 8899999999998843 334455678899999986553 45555566666666554321 11
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHhHhhhhcCCCC--HHHHHHHHHHHHHHHHHhhh-hhHhh
Q 001442 806 ELIKEENEQEEEVFDQVGEILGTLIKTFKAAFLPFFDELSSYLTPMWGKDKT--AEERRIAICIFDDVAEQCRE-AALKY 882 (1076)
Q Consensus 806 ~~~~e~~e~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~--~~~r~~al~~l~~l~~~~~~-~~~~~ 882 (1076)
-.++-....++..+....+.-...|+.++.|.++..-....+ -.+|..|+.+++.+.+..+. ...+|
T Consensus 923 ----------~~v~vstl~~i~~~l~~~~tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~f 992 (1030)
T KOG1967|consen 923 ----------VIVRVSTLRTIPMLLTESETLQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSF 992 (1030)
T ss_pred ----------cchhhhHhhhhhHHHHhccccchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccc
Confidence 234456778888888888887788899999999886533222 56899999999999997764 66789
Q ss_pred HHhHHHHHHhhccCCChhHHhhhhHHHHHHHhhc
Q 001442 883 YETYLPFLLEACNDENQDVRQAAVYGLGVCAEFG 916 (1076)
Q Consensus 883 ~~~ll~~l~~~l~~~~~~vr~~a~~~lg~l~~~~ 916 (1076)
-++++..+.+.+.|+..-||..|+.+=+.....+
T Consensus 993 r~~Vl~al~k~LdDkKRlVR~eAv~tR~~W~~l~ 1026 (1030)
T KOG1967|consen 993 RPLVLRALIKILDDKKRLVRKEAVDTRQNWYMLG 1026 (1030)
T ss_pred cHHHHHHhhhccCcHHHHHHHHHHHHhhhhhhcc
Confidence 9999999999999999999999998877665543
No 109
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.71 E-value=0.00073 Score=67.98 Aligned_cols=144 Identities=18% Similarity=0.276 Sum_probs=120.7
Q ss_pred HHhhcCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhH
Q 001442 345 PAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVL 424 (1076)
Q Consensus 345 ~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll 424 (1076)
...+.+.+|..+.-++..+..+++..++.+.+.+..++-.+.+.++++...|-.+||.+++.+.+.+...+ .+.+..++
T Consensus 94 l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i-~~~ld~lv 172 (334)
T KOG2933|consen 94 LKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSI-DQELDDLV 172 (334)
T ss_pred HHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 34567889999999999999999999988889999999999999999999999999999999999888777 34666666
Q ss_pred HHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHhH
Q 001442 425 PALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQ 497 (1076)
Q Consensus 425 ~~l~~~l~~~~~~~v~~~a~~aL~~l~~~~~~~~l~~~l~~ll~~l~~~l~~~~~~v~~~al~ai~~l~~~~~ 497 (1076)
..|+..-.+ .+.-|++.|-.+|..++.+..+. .+++.|...+++.++.+|..+..+........|
T Consensus 173 ~~Ll~ka~~-dnrFvreda~kAL~aMV~~vtp~-------~~L~~L~~~~~~~n~r~r~~a~~~~~~~v~rl~ 237 (334)
T KOG2933|consen 173 TQLLHKASQ-DNRFVREDAEKALVAMVNHVTPQ-------KLLRKLIPILQHSNPRVRAKAALCFSRCVIRLG 237 (334)
T ss_pred HHHHhhhcc-cchHHHHHHHHHHHHHHhccChH-------HHHHHHHHHHhhhchhhhhhhhccccccceecc
Confidence 666655555 57789999999999999887653 357778888899999999888887777666655
No 110
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.71 E-value=0.0035 Score=71.65 Aligned_cols=233 Identities=15% Similarity=0.191 Sum_probs=163.5
Q ss_pred HHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHhHhhHHhh
Q 001442 424 LPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKY 503 (1076)
Q Consensus 424 l~~l~~~l~~~~~~~v~~~a~~aL~~l~~~~~~~~l~~~l~~ll~~l~~~l~~~~~~v~~~al~ai~~l~~~~~~~~~~~ 503 (1076)
+...+..+.| +-+.+|..+..-|..+++.-.+.. .-....++...+..+.+.++.+--.++..+..+++..+
T Consensus 729 ~qeai~sl~d-~qvpik~~gL~~l~~l~e~r~~~~-~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~------ 800 (982)
T KOG4653|consen 729 LQEAISSLHD-DQVPIKGYGLQMLRHLIEKRKKAT-LIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYP------ 800 (982)
T ss_pred HHHHHHHhcC-CcccchHHHHHHHHHHHHhcchhh-hhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcc------
Confidence 5555667777 777889999999999998543322 23456788889999999999998888888888888744
Q ss_pred HhhhHHHHHHHHhccCCchhhhhHHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHhcCCCCCCChhhHHHHHHHHHHH
Q 001442 504 YDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLC 583 (1076)
Q Consensus 504 ~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~g~~~~~~~~~~ii~~l~~~~~~~~~~~~~~~~~~~~~~~~l~ 583 (1076)
+.++|.+.+...+.........|-++-|++..++++.| +-+..|...+++..+.... +++...|.+.+..+|.+|
T Consensus 801 -e~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~G-el~~~y~~~Li~tfl~gvr---epd~~~RaSS~a~lg~Lc 875 (982)
T KOG4653|consen 801 -EDILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALG-ELVFKYKAVLINTFLSGVR---EPDHEFRASSLANLGQLC 875 (982)
T ss_pred -hhhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHhcC---CchHHHHHhHHHHHHHHH
Confidence 45667776654442222212234455589999999999 7888898888888877433 235568888999999999
Q ss_pred HHhccCcccchhhhhHHHHHhccCCCCccccCCCCCccccCCCCcccchhhcCCceeeecchhHHHHHHHHHHHHHHHHH
Q 001442 584 KCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATACNMLCCYADE 663 (1076)
Q Consensus 584 ~~~~~~~~~~l~~i~~~ll~~~~~~~~~~~~~~d~d~~~~~~d~~~~~~~~~~~~~~~v~~~~~~~k~~A~~~l~~i~~~ 663 (1076)
....-....++..+...+++....+.. ..-|.+|++.+..+..+
T Consensus 876 q~~a~~vsd~~~ev~~~Il~l~~~d~s------------------------------------~~vRRaAv~li~~lL~~ 919 (982)
T KOG4653|consen 876 QLLAFQVSDFFHEVLQLILSLETTDGS------------------------------------VLVRRAAVHLLAELLNG 919 (982)
T ss_pred HHHhhhhhHHHHHHHHHHHHHHccCCc------------------------------------hhhHHHHHHHHHHHHhc
Confidence 988766666777777777766643211 12367899999999999
Q ss_pred hhhcccccHH----HHHHHhhhcccccCCHHHHHHHHHHHHHHHHH
Q 001442 664 LKEGFFPWID----QVAPTLVPLLKFYFHEEVRKAAVSAMPELLRS 705 (1076)
Q Consensus 664 ~~~~~~p~l~----~~~~~l~~~l~~~~~~~vr~~a~~~l~~L~~~ 705 (1076)
++..+.|++. +....+.........+.+|..|+.++-.+-..
T Consensus 920 tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~leei~a~ 965 (982)
T KOG4653|consen 920 TGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEEIQAA 965 (982)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHH
Confidence 9988888553 33444444444444667777777776655443
No 111
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.70 E-value=0.0012 Score=64.44 Aligned_cols=108 Identities=21% Similarity=0.330 Sum_probs=82.3
Q ss_pred ChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhc
Q 001442 352 EWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAM 431 (1076)
Q Consensus 352 ~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l 431 (1076)
++..|..++.++|-++...+. .++..++.+...|.|++|.||..|+.++..+... ++ ...-..++..++..+
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~----~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~---d~-ik~k~~l~~~~l~~l 72 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPN----LVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILE---DM-IKVKGQLFSRILKLL 72 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcH----HHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHc---Cc-eeehhhhhHHHHHHH
Confidence 467899999999988876654 3455677888899999999999999999998753 22 244556667788888
Q ss_pred cCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHH
Q 001442 432 DDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVS 468 (1076)
Q Consensus 432 ~~~~~~~v~~~a~~aL~~l~~~~~~~~l~~~l~~ll~ 468 (1076)
.| +++.||..|..++..+.....+..+...++.++.
T Consensus 73 ~D-~~~~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~ 108 (178)
T PF12717_consen 73 VD-ENPEIRSLARSFFSELLKKRNPNIIYNNFPELIS 108 (178)
T ss_pred cC-CCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHH
Confidence 99 9999999999999999877554444333333333
No 112
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=97.69 E-value=0.001 Score=63.75 Aligned_cols=138 Identities=22% Similarity=0.287 Sum_probs=114.4
Q ss_pred HhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCC
Q 001442 376 KNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCT 455 (1076)
Q Consensus 376 ~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~aL~~l~~~~~ 455 (1076)
..++.++..+.+.++++++.-|..++..++..++..+.+....+....+..+++.|+....+.+...++.++..++....
T Consensus 21 ~~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~ 100 (165)
T PF08167_consen 21 SALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIR 100 (165)
T ss_pred HHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Confidence 45667778888899999999999999999999998866665677788899999999885566788999999999987653
Q ss_pred c------ccccCchHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHhHhhHHhhHhhhHHHHHHHH
Q 001442 456 P------EILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAIL 515 (1076)
Q Consensus 456 ~------~~l~~~l~~ll~~l~~~l~~~~~~v~~~al~ai~~l~~~~~~~~~~~~~~i~~~L~~~l 515 (1076)
+ +...|.++.+++.+++++++ ......++.++..+....+..|.||...+-..+...+
T Consensus 101 ~~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~ptt~rp~~~ki~~~l~~ll 164 (165)
T PF08167_consen 101 GKPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPTTFRPFANKIESALLSLL 164 (165)
T ss_pred CCCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCccccchHHHHHHHHHHHh
Confidence 2 44678999999999999886 5577889999999999999889999888776665543
No 113
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.66 E-value=0.28 Score=59.08 Aligned_cols=114 Identities=17% Similarity=0.186 Sum_probs=81.0
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhCCcchHhHHhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccCc
Q 001442 146 PFMFQCVSSDSVKLQESAFLIFAQLIINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEP 225 (1076)
Q Consensus 146 ~~l~~~~~~~~~~~r~~al~~L~~l~~~~~~~l~~~~~~~~~~~l~p~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~ 225 (1076)
..+...+.+.+...|...+.+++.++...++. .+.....+.+-..+++.+.+.+.+-.+-+|..++++|..+++.+.
T Consensus 315 ~~lv~lld~es~~lRnavlei~~n~V~~~l~d---~e~~~~sk~~r~~~le~l~erl~Dvsa~vRskVLqv~~~l~~~~s 391 (1251)
T KOG0414|consen 315 TLLVDLLDSESYTLRNAVLEICANLVASELRD---EELEEMSKSLRDELLELLRERLLDVSAYVRSKVLQVFRRLFQQHS 391 (1251)
T ss_pred HHHHHhcCCchHHHHHHHHHHHHHHHHHHhcc---hhhhHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHccC
Confidence 34444667778889988888888776554432 222233344444588888888888899999999999999998765
Q ss_pred HHHHHhHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHH
Q 001442 226 RFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAE 265 (1076)
Q Consensus 226 ~~~~~~l~~l~~~l~~~~~~~~~~~~~r~~al~~l~~l~~ 265 (1076)
...+ ....++......+.++ +.-||..|+..+..+..
T Consensus 392 ~p~~-~~~eV~~la~grl~Dk--SslVRk~Ai~Ll~~~L~ 428 (1251)
T KOG0414|consen 392 IPLG-SRTEVLELAIGRLEDK--SSLVRKNAIQLLSSLLD 428 (1251)
T ss_pred CCcc-HHHHHHHHHhcccccc--cHHHHHHHHHHHHHHHh
Confidence 4433 3556777666666443 56799999999999887
No 114
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.62 E-value=0.11 Score=59.50 Aligned_cols=288 Identities=19% Similarity=0.202 Sum_probs=167.2
Q ss_pred cchhHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhCCcchHhHHhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Q 001442 141 WPELLPFMFQCVSSDSVKLQESAFLIFAQLIINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIEL 220 (1076)
Q Consensus 141 w~~ll~~l~~~~~~~~~~~r~~al~~L~~l~~~~~~~l~~~~~~~~~~~l~p~~l~~l~~~~~~~~~~~~~~~~~~l~~l 220 (1076)
...+++++-.++.+....+.--+.+.+..+ ... .-+.+.| -+.++..++.++....|..+++.|+++
T Consensus 243 ~s~~~~fl~s~l~~K~emV~~EaArai~~l--------~~~----~~r~l~p-avs~Lq~flssp~~~lRfaAvRtLnkv 309 (865)
T KOG1078|consen 243 DSPLFPFLESCLRHKSEMVIYEAARAIVSL--------PNT----NSRELAP-AVSVLQLFLSSPKVALRFAAVRTLNKV 309 (865)
T ss_pred hhhHHHHHHHHHhchhHHHHHHHHHHHhhc--------ccc----CHhhcch-HHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 455778888888876665544344443222 110 0112223 567777778888999999999999999
Q ss_pred HccCcHHHHHhHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHhhcccchhhccchhhHHHHHHHHHHhhcCCCCCcc
Q 001442 221 AGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPL 300 (1076)
Q Consensus 221 ~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~dd~~ 300 (1076)
+..+|....---.++=+ + .. +.+..+... .+.++.+.. ...-+..++..+-..+.+..|
T Consensus 310 Am~~P~~v~~cN~elE~-l---It--d~NrsIat~---AITtLLKTG---------~e~sv~rLm~qI~~fv~disD--- 368 (865)
T KOG1078|consen 310 AMKHPQAVTVCNLDLES-L---IT--DSNRSIATL---AITTLLKTG---------TESSVDRLMKQISSFVSDISD--- 368 (865)
T ss_pred HHhCCccccccchhHHh-h---hc--ccccchhHH---HHHHHHHhc---------chhHHHHHHHHHHHHHHhccc---
Confidence 99887654321111111 1 11 223333333 334444320 011234444444444443322
Q ss_pred ccCCCCCCcccCCCCchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhc-CCChhHHHHHHHHHHHHHhhcHHHHHHhHH
Q 001442 301 WHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLA-APEWQKHHAALIALAQIAEGCAKVMVKNLE 379 (1076)
Q Consensus 301 ~~~~~~e~~d~~e~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-~~~~~~r~aal~~l~~l~~~~~~~~~~~l~ 379 (1076)
+ ......+++..++..++.+ ...+++++...+. +.....+.+.+.++..+++..++.-.+-+.
T Consensus 369 ------------e--FKivvvdai~sLc~~fp~k--~~~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe~~L~ 432 (865)
T KOG1078|consen 369 ------------E--FKIVVVDAIRSLCLKFPRK--HTVMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDSKERGLE 432 (865)
T ss_pred ------------c--ceEEeHHHHHHHHhhccHH--HHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcchhhHHHH
Confidence 1 2334566777888777632 3345667766665 456788889999999998877765445555
Q ss_pred HHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhH-HhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCccc
Q 001442 380 QVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDL-QNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEI 458 (1076)
Q Consensus 380 ~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~-~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~aL~~l~~~~~~~~ 458 (1076)
.++.+|..+- .+..+...++.+....+... ...|...+.+.+ .= .+..||.+|..+|.+|.-. ...
T Consensus 433 ~LCefIEDce------~~~i~~rILhlLG~EgP~a~~Pskyir~iyNRv----iL-En~ivRaaAv~alaKfg~~--~~~ 499 (865)
T KOG1078|consen 433 HLCEFIEDCE------FTQIAVRILHLLGKEGPKAPNPSKYIRFIYNRV----IL-ENAIVRAAAVSALAKFGAQ--DVV 499 (865)
T ss_pred HHHHHHHhcc------chHHHHHHHHHHhccCCCCCCcchhhHHHhhhh----hh-hhhhhHHHHHHHHHHHhcC--CCC
Confidence 6666665332 23345555555555443211 023444443332 22 4688999999999999822 222
Q ss_pred ccCchHHHHHHHHHHhhcCchhHHHHHHHHHHHHHH
Q 001442 459 LTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVAD 494 (1076)
Q Consensus 459 l~~~l~~ll~~l~~~l~~~~~~v~~~al~ai~~l~~ 494 (1076)
..+.+...|..++.+.+..+|..|-.++..+-.
T Consensus 500 ---l~~sI~vllkRc~~D~DdevRdrAtf~l~~l~~ 532 (865)
T KOG1078|consen 500 ---LLPSILVLLKRCLNDSDDEVRDRATFYLKNLEE 532 (865)
T ss_pred ---ccccHHHHHHHHhcCchHHHHHHHHHHHHHhhh
Confidence 235666777888999999999999888877763
No 115
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.60 E-value=0.24 Score=56.80 Aligned_cols=265 Identities=16% Similarity=0.217 Sum_probs=147.6
Q ss_pred chhHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhCCcchHhHHhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Q 001442 142 PELLPFMFQCVSSDSVKLQESAFLIFAQLIINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELA 221 (1076)
Q Consensus 142 ~~ll~~l~~~~~~~~~~~r~~al~~L~~l~~~~~~~l~~~~~~~~~~~l~p~~l~~l~~~~~~~~~~~~~~~~~~l~~l~ 221 (1076)
++.+..+++.+...+-.+|..++..+..++.. .. ...+..--..|.-+..+...+.+..+-.|..++-.|..++
T Consensus 121 qd~I~lll~~~e~~DF~VR~~aIqLlsalls~----r~--~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~ 194 (970)
T KOG0946|consen 121 QDNITLLLQSLEEFDFHVRLYAIQLLSALLSC----RP--TELQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELV 194 (970)
T ss_pred chhHHHHHHHHHhhchhhhhHHHHHHHHHHhc----CC--HHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHH
Confidence 66778888888888889999999998776422 11 0011111123555666666677778889999999999999
Q ss_pred ccCcHHHH-HhHHHHHHHHHHHhcCCC-cch-hHHHHHHHHHHHHHHhhcccchhhccchhhHHHHHHHHHHhhcCCCCC
Q 001442 222 GTEPRFLR-RQLVDVVGSMLQIAEAES-LEE-GTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDD 298 (1076)
Q Consensus 222 ~~~~~~~~-~~l~~l~~~l~~~~~~~~-~~~-~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~dd 298 (1076)
..++..=. -.+..+++.++.++.... .+. -+..-|+-++..+.++......+++. ..| +|-+.+.+....-.
T Consensus 195 k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE-~~~----i~rL~klL~~f~~~ 269 (970)
T KOG0946|consen 195 KDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFRE-GSY----IPRLLKLLSVFEFG 269 (970)
T ss_pred ccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhc-ccc----HHHHHhhcCccccc
Confidence 87764321 135577888888876543 222 36778888999999864333333333 224 34444333322110
Q ss_pred ccccCCCCCCcccCCCCchhh-----HHHHHHHHHHHcCCCcc---------hHHHHHHHHHhhcCC--ChhHHHHHHHH
Q 001442 299 PLWHSAETEDEDAGESSNYSV-----GQECLDRLAIALGGNTI---------VPVASEQLPAYLAAP--EWQKHHAALIA 362 (1076)
Q Consensus 299 ~~~~~~~~e~~d~~e~~~~~~-----a~~~l~~l~~~~~~~~~---------~~~l~~~l~~~l~~~--~~~~r~aal~~ 362 (1076)
|++...|+..++ +.+++..+..--.+..+ -..++..+...+.++ ...++..++.+
T Consensus 270 ---------d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIltesiit 340 (970)
T KOG0946|consen 270 ---------DGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILTESIIT 340 (970)
T ss_pred ---------CcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHHHHHHH
Confidence 001113433332 33444433321111011 122444455555554 35788899999
Q ss_pred HHHHHhhcHHH---HH----HhHH----HHHHHHHhhCCCC-ChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHH
Q 001442 363 LAQIAEGCAKV---MV----KNLE----QVLSMVLNSFRDP-HPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPAL 427 (1076)
Q Consensus 363 l~~l~~~~~~~---~~----~~l~----~i~~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l 427 (1076)
++.++.|+... +. ++.+ .|+-.+....... .+..|.+++.|+..+...- .+.+..++..++|..
T Consensus 341 vAevVRgn~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~dN-~~gq~~~l~tllp~~ 416 (970)
T KOG0946|consen 341 VAEVVRGNARNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLYDN-DDGQRKFLKTLLPSS 416 (970)
T ss_pred HHHHHHhchHHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHHhcc-hhhHHHHHHHHhhhh
Confidence 99999887632 11 2222 2333333344444 3567888888888775432 122245555555543
No 116
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=97.53 E-value=0.0061 Score=62.51 Aligned_cols=191 Identities=19% Similarity=0.236 Sum_probs=122.6
Q ss_pred HHHHHHHhhc-CCChhHHHHHHHHHHHHHhhcHHHHHHhHH--HHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhch--h
Q 001442 340 ASEQLPAYLA-APEWQKHHAALIALAQIAEGCAKVMVKNLE--QVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGP--D 414 (1076)
Q Consensus 340 l~~~l~~~l~-~~~~~~r~aal~~l~~l~~~~~~~~~~~l~--~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~--~ 414 (1076)
-++.+...++ +.++..++.++.+++..+..... ...+. ..++.+.+.+.++++.+|..|++++..++..... .
T Consensus 13 ~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~n--q~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~ 90 (254)
T PF04826_consen 13 ELQKLLCLLESTEDPFIQEKALIALGNSAAFPFN--QDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQ 90 (254)
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHhhccChhH--HHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHH
Confidence 3344445555 56899999999999997654321 22233 3578899999999999999999999998865432 2
Q ss_pred HHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCchhHHHHHHHHHHHHHH
Q 001442 415 LQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVAD 494 (1076)
Q Consensus 415 ~~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~aL~~l~~~~~~~~l~~~l~~ll~~l~~~l~~~~~~v~~~al~ai~~l~~ 494 (1076)
+ +.|.+.++..+... .-+..+|.++..+|.++.-.-. ....+...++.++.++..++..+|..++.++..++.
T Consensus 91 I-k~~i~~Vc~~~~s~---~lns~~Q~agLrlL~nLtv~~~---~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~ 163 (254)
T PF04826_consen 91 I-KMYIPQVCEETVSS---PLNSEVQLAGLRLLTNLTVTND---YHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSE 163 (254)
T ss_pred H-HHHHHHHHHHHhcC---CCCCHHHHHHHHHHHccCCCcc---hhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhcc
Confidence 2 34555555444432 1356899999999999853321 123345567788889999999999999999999876
Q ss_pred HhHhhHHhhH-hhhHHHHHHHHhccCCchhhhhHHHHHHHHHHHHHHhch
Q 001442 495 SSQEHFQKYY-DAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGK 543 (1076)
Q Consensus 495 ~~~~~~~~~~-~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~g~ 543 (1076)
...- ....+ .+.++.+..++....+ ..+.-+++..+..+...+++
T Consensus 164 np~~-~~~Ll~~q~~~~~~~Lf~~~~~---~~~l~~~l~~~~ni~~~~~~ 209 (254)
T PF04826_consen 164 NPDM-TRELLSAQVLSSFLSLFNSSES---KENLLRVLTFFENINENIKK 209 (254)
T ss_pred CHHH-HHHHHhccchhHHHHHHccCCc---cHHHHHHHHHHHHHHHhhCc
Confidence 4221 11122 2456666666654322 22333445555555555443
No 117
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=97.53 E-value=0.27 Score=65.24 Aligned_cols=119 Identities=13% Similarity=0.159 Sum_probs=83.2
Q ss_pred hHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHH
Q 001442 337 VPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQ 416 (1076)
Q Consensus 337 ~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~ 416 (1076)
....-..+..++.+.++..-..+..++|.++-++.-.....++.-+..+...+.+....=|.+|.+.+..+....+.-+
T Consensus 91 ~s~~~n~l~~l~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~v~~~~k~~~ew~~~~~~~~~~~a~~~~~~l~~~~P~~~- 169 (2341)
T KOG0891|consen 91 ISRLANYLRYLLPSNDVEVMELAAKSLGLLAAPGKTKTAELVDFEVKRLIEWLGERQEYRRLAAVLIIKELADNVPTFF- 169 (2341)
T ss_pred hHhHHHHHHHhhccCChHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhHhhcCcHHH-
Confidence 3444555556666778998888999999888766532223333334444444455555556777888888877665433
Q ss_pred hhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcc
Q 001442 417 NQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPE 457 (1076)
Q Consensus 417 ~~~~~~ll~~l~~~l~~~~~~~v~~~a~~aL~~l~~~~~~~ 457 (1076)
-.+.+.++..++..+.+ +++.++..||.++.........+
T Consensus 170 ~~~~~~~~~~i~~~~~~-~~~~i~~~a~~al~~~~~~~~~~ 209 (2341)
T KOG0891|consen 170 YPYVNKFFKNIFAALRD-PKPAIRLQACSALHAVLSSLAQR 209 (2341)
T ss_pred HHHHHHHHHHHHHhccC-CChhhhHHHHHHHHHHHhhhhhc
Confidence 57888888999999999 89999999999999887665543
No 118
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.49 E-value=0.0025 Score=62.30 Aligned_cols=111 Identities=18% Similarity=0.193 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhchhhhHHHHHHhHhhhhcCCCCHHHHHHHHHHHHHHHHHhhhhhHhhHHhHHHHHHhhcc
Q 001442 816 EEVFDQVGEILGTLIKTFKAAFLPFFDELSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREAALKYYETYLPFLLEACN 895 (1076)
Q Consensus 816 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~ 895 (1076)
..++..+.-++|.++..++.-+-|+... +...+ .|.++.+|..|+.++..++... +...-..++..++.++.
T Consensus 2 ~~vR~n~i~~l~DL~~r~~~~ve~~~~~----l~~~L-~D~~~~VR~~al~~Ls~Li~~d---~ik~k~~l~~~~l~~l~ 73 (178)
T PF12717_consen 2 PSVRNNAIIALGDLCIRYPNLVEPYLPN----LYKCL-RDEDPLVRKTALLVLSHLILED---MIKVKGQLFSRILKLLV 73 (178)
T ss_pred HHHHHHHHHHHHHHHHhCcHHHHhHHHH----HHHHH-CCCCHHHHHHHHHHHHHHHHcC---ceeehhhhhHHHHHHHc
Confidence 3577889999999999988765555444 44445 6789999999999999998653 22334566677778889
Q ss_pred CCChhHHhhhhHHHHHHHhh-cCCCchHHHHHHHHHHHHh
Q 001442 896 DENQDVRQAAVYGLGVCAEF-GGSVVKPLVGEALSRLNVV 934 (1076)
Q Consensus 896 ~~~~~vr~~a~~~lg~l~~~-~~~~~~~~~~~il~~L~~~ 934 (1076)
|+++.||..|..++..+... .+..+...+++++-.|.+.
T Consensus 74 D~~~~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~~~ 113 (178)
T PF12717_consen 74 DENPEIRSLARSFFSELLKKRNPNIIYNNFPELISSLNNC 113 (178)
T ss_pred CCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhCc
Confidence 99999999999999999998 5666666666666665543
No 119
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.47 E-value=0.00046 Score=58.60 Aligned_cols=86 Identities=34% Similarity=0.552 Sum_probs=68.1
Q ss_pred HHHHHhhC-CCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCccccc
Q 001442 382 LSMVLNSF-RDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILT 460 (1076)
Q Consensus 382 ~~~l~~~l-~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~aL~~l~~~~~~~~l~ 460 (1076)
++.+++.+ +|+++.||..++++++++. .+.++|.+...+.| +++.||..|+.+|+.+-
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~-----------~~~~~~~L~~~l~d-~~~~vr~~a~~aL~~i~--------- 59 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG-----------DPEAIPALIELLKD-EDPMVRRAAARALGRIG--------- 59 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT-----------HHHHHHHHHHHHTS-SSHHHHHHHHHHHHCCH---------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC-----------CHhHHHHHHHHHcC-CCHHHHHHHHHHHHHhC---------
Confidence 45677777 8999999999999999542 22568888888888 99999999999999872
Q ss_pred CchHHHHHHHHHHhhcC-chhHHHHHHHHHH
Q 001442 461 PYLDGIVSKLLVLLQNG-KQMVQEGALTALA 490 (1076)
Q Consensus 461 ~~l~~ll~~l~~~l~~~-~~~v~~~al~ai~ 490 (1076)
-+..++.|...+.++ +..+|..++.+||
T Consensus 60 --~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 --DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp --HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 145678888888775 4567998988886
No 120
>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.46 E-value=0.31 Score=54.68 Aligned_cols=143 Identities=22% Similarity=0.253 Sum_probs=112.3
Q ss_pred hHHHHHHHHHhc-CCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHccCCCHHHHHHHHHHHHHhcccCCCCcccCCCHh
Q 001442 21 SAPFETLISHLM-STSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLH 99 (1076)
Q Consensus 21 ~~~l~~lL~~~~-s~d~~~r~~Ae~~L~~~~~~~p~~~~~~L~~il~~~~~~~~R~~a~v~Lk~~i~~~~~~~w~~l~~~ 99 (1076)
.++++.+-..++ +.|+..|.+||+.|.++.. +|+ ++.-+.-++..+..|....+|+..|-+.+..+ ..++.+
T Consensus 4 LaqLe~lCk~LY~s~D~~~R~~AE~~L~e~s~-spe-clskCqlll~~gs~pYs~mlAst~L~Klvs~~-----t~lpl~ 76 (1082)
T KOG1410|consen 4 LAQLESLCKDLYESTDPTARHRAEKALAELSE-SPE-CLSKCQLLLERGSYPYSQMLASTCLMKLVSRK-----TPLPLE 76 (1082)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHcc-CHH-HHHHHHHHHHcCCCchHHHHHHHHHHHHHcCC-----CCCcHH
Confidence 457777777776 7799999999999999999 687 56777777777888999999999999999886 478999
Q ss_pred HHHHHHHHHHHHHhhcc---hhhHHHHHHHHHHHHHhcccCCC-----CcchhHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 001442 100 TQSSLKSMLLQSIQLES---AKSISKKLCDTVSELASNILPEN-----GWPELLPFMFQCVSSDSVKLQESAFLIFAQL 170 (1076)
Q Consensus 100 ~~~~lk~~Ll~~l~~~~---~~~vr~~~~~~i~~ia~~~~~~~-----~w~~ll~~l~~~~~~~~~~~r~~al~~L~~l 170 (1076)
+|-.||+-+++.+.+.. .+-|-.+++++++++-+..|-.. .+-+.+..+...++.++....-.|+.+|..+
T Consensus 77 qrldir~Yilnylat~~Pk~~~fvi~sLiQl~arlTK~gW~d~~k~~y~FRd~v~~~~kfl~~~~ve~~~igv~iLsqL 155 (1082)
T KOG1410|consen 77 QRLDIRNYILNYLATGAPKLAPFVIQSLIQLFARLTKLGWFDQQKDEYVFRDPVDDVTKFLQMDNVEHCIIGVQILSQL 155 (1082)
T ss_pred HHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHhccccccccccchhhhhHHHHHHHhccCchHHHHHHHHHHHHH
Confidence 99999999999998622 45588899999999988666432 2455666667777766666666666666665
No 121
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=97.40 E-value=0.051 Score=58.05 Aligned_cols=189 Identities=18% Similarity=0.158 Sum_probs=126.1
Q ss_pred hhhhHHHHHHhHhhhhcCCCCHHHHHHHHHHHHHHHHHhh--hhhHhhHHhHHHHHHhhccCC--ChhHHhhhhHHHHHH
Q 001442 837 FLPFFDELSSYLTPMWGKDKTAEERRIAICIFDDVAEQCR--EAALKYYETYLPFLLEACNDE--NQDVRQAAVYGLGVC 912 (1076)
Q Consensus 837 ~~~~~~~l~~~l~~~l~~~~~~~~r~~al~~l~~l~~~~~--~~~~~~~~~ll~~l~~~l~~~--~~~vr~~a~~~lg~l 912 (1076)
+.....+++..+.+.+++... +++..|+.+++-++-.+| ......+..+.|.+...+.|. .+.+|.+++.+||.+
T Consensus 80 v~~~~~tL~~~~~k~lkkg~~-~E~~lA~~~l~Ll~ltlg~g~~~~ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~ 158 (309)
T PF05004_consen 80 VEDRRETLLDALLKSLKKGKS-EEQALAARALALLALTLGAGEDSEEIFEELKPVLKRILTDSSASPKARAACLEALAIC 158 (309)
T ss_pred HHHHHHHHHHHHHHHhccCCH-HHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHH
Confidence 345667789999999876655 677888888888888866 566678899999999998875 457888999999999
Q ss_pred HhhcCCCchHHH--HHHHHHHHHhh--cCCCC----CChhhhhHHHHHHHHHHHHHhhcCCC-C--CHhhHHHHHHhhCC
Q 001442 913 AEFGGSVVKPLV--GEALSRLNVVI--RHPNA----LQPENLMAYDNAVSALGKICQFHRDS-I--DAAQVVPAWLNCLP 981 (1076)
Q Consensus 913 ~~~~~~~~~~~~--~~il~~L~~~l--~~~~~----~~~~~~~~~~na~~al~~i~~~~~~~-~--~~~~~l~~~l~~lp 981 (1076)
+-.++....... .+.++.+.... ...+. ...++..+.-+|+.+-|-++...+.. + .+...+|.+...|-
T Consensus 159 ~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~ 238 (309)
T PF05004_consen 159 TFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLD 238 (309)
T ss_pred HHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhc
Confidence 998776543322 24555333322 21111 11234578889999999998776652 2 25667787777775
Q ss_pred CCCcHHHHHHHHHHHHHHHhhcCCcccCcCcCchhhHHHHHHHHhc
Q 001442 982 IKGDLIEAKIVHEQLCSMVERSDSDLLGPNHQYLPKIVSVFAEILC 1027 (1076)
Q Consensus 982 ~~~d~~e~~~~~~~l~~li~~~~~~~~~~~~~~l~~i~~~~~~~l~ 1027 (1076)
- .|.+....+-++|.-+++..+..--...+.+.+++++.+.+...
T Consensus 239 s-~d~~VRiAAGEaiAll~E~~~~~~~~~~~~~~~~l~~~l~~La~ 283 (309)
T PF05004_consen 239 S-DDVDVRIAAGEAIALLYELARDHEEDFLYEDMEELLEQLRELAT 283 (309)
T ss_pred C-CCHHHHHHHHHHHHHHHHHhhcccccccccCHHHHHHHHHHHHH
Confidence 3 57777777878888777766532111111256667666655544
No 122
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.40 E-value=0.43 Score=54.88 Aligned_cols=244 Identities=13% Similarity=0.160 Sum_probs=144.3
Q ss_pred HHHHHHHHHHHHHHhhhcccccHHHHHHHhhhccc--ccCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHH
Q 001442 650 KATACNMLCCYADELKEGFFPWIDQVAPTLVPLLK--FYFHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLS 727 (1076)
Q Consensus 650 k~~A~~~l~~i~~~~~~~~~p~l~~~~~~l~~~l~--~~~~~~vr~~a~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~ 727 (1076)
|.+...+.|.-+..+.+ ..+|-..+...+++-+. .....-+|+..+-.++.-+.. +...+.-
T Consensus 461 KDAiYaa~g~~a~~l~~-~~dF~~Wl~~~llpEl~~~~~~~RiiRRRVa~ilg~Wvsv---------------q~~~e~k 524 (978)
T KOG1993|consen 461 KDAIYAAFGLAAYELSN-ILDFDKWLQEALLPELANDHGNSRIIRRRVAWILGQWVSV---------------QQKLELK 524 (978)
T ss_pred HHHHHHHHHHHHHHHHh-cCCHHHHHHHhhCHHhhhcccchhHHHHHHHHHHhhhhhe---------------echHhHH
Confidence 44444445544444333 23333333333333332 222345677777766654431 1122333
Q ss_pred HHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcCCCCChHhhhh
Q 001442 728 DFIIPALVEALHKEPDTEICASMLDSLNECIQISGPLLDEGQVRSIVDEIKQVITASSSRKRERAERAKAEDFDAEESEL 807 (1076)
Q Consensus 728 ~~i~~~l~~~l~~~~~~~~~~~~l~~l~~~i~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ed~d~~~~~~ 807 (1076)
..+...+++.+++..|.-++.+...++.-+++... ++++...++++.++..+-+.+.....
T Consensus 525 ~l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~n--F~~dsFlp~lenlf~~lfkll~~~~e----------------- 585 (978)
T KOG1993|consen 525 PLLYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWN--FSEDSFLPYLENLFVLLFKLLKAVEE----------------- 585 (978)
T ss_pred HHHHHHHHHhcCccccceeehHHHHHHHHhhhhcc--CChhhhhhhHHHHHHHHHHHHHHHhh-----------------
Confidence 33445556666666688888888888888877643 55666666667666666555432221
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHhHhhhhcCCCC-HHHHHHHHHHHHHHHHHhhhhhHhhHHhH
Q 001442 808 IKEENEQEEEVFDQVGEILGTLIKTFKAAFLPFFDELSSYLTPMWGKDKT-AEERRIAICIFDDVAEQCREAALKYYETY 886 (1076)
Q Consensus 808 ~~e~~e~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~-~~~r~~al~~l~~l~~~~~~~~~~~~~~l 886 (1076)
-+.+..+..+++.++...++...|+...+...+-..++.+.. +-.|...++++..++...|....++++-+
T Consensus 586 --------~Dtk~~VL~~ls~lI~r~~e~I~P~~~~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~qS~~~~~fL 657 (978)
T KOG1993|consen 586 --------CDTKTSVLNLLSTLIERVSEHIAPYASTIVQYLPLLWEESEEEPLLRCALLATLRNLVNALGAQSFEFYPFL 657 (978)
T ss_pred --------hhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhccCCccchHHH
Confidence 123457888899999999998889888877777666755443 33566778999999999999877888888
Q ss_pred HHHHHhhccCCChhHHhhh--hHHH-HHHHhhcCCCchHHHHHHHHHHHHhhcC
Q 001442 887 LPFLLEACNDENQDVRQAA--VYGL-GVCAEFGGSVVKPLVGEALSRLNVVIRH 937 (1076)
Q Consensus 887 l~~l~~~l~~~~~~vr~~a--~~~l-g~l~~~~~~~~~~~~~~il~~L~~~l~~ 937 (1076)
+|++-.+..-+.|+--.-. .+.+ +....+. +.+.|.+-.+++.|..++..
T Consensus 658 ~pVIel~~D~~sP~hv~L~EDgmeLW~~~L~n~-~~l~p~ll~L~p~l~~~iE~ 710 (978)
T KOG1993|consen 658 YPVIELSTDPSSPEHVYLLEDGMELWLTTLMNS-QKLTPELLLLFPHLLYIIEQ 710 (978)
T ss_pred HHHHHHhcCCCCCceeehhhhHHHHHHHHHhcc-cccCHHHHHHHHHHHHHHHh
Confidence 8887776654443211111 1222 2233333 44556666666777766653
No 123
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=97.39 E-value=0.0016 Score=62.36 Aligned_cols=143 Identities=21% Similarity=0.252 Sum_probs=101.0
Q ss_pred hHHHHHHHHHHHHHhh-cHHHHHHhHHHHHHH------------HHhhCCCCChhHHHHHHHHHHHhhhhhchhHH----
Q 001442 354 QKHHAALIALAQIAEG-CAKVMVKNLEQVLSM------------VLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQ---- 416 (1076)
Q Consensus 354 ~~r~aal~~l~~l~~~-~~~~~~~~l~~i~~~------------l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~---- 416 (1076)
++|.+|+.+|+.+++. -+..+..|...++|. +...+.|++++||.+|+.++..+.+..++.+.
T Consensus 1 kvR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~ 80 (182)
T PF13251_consen 1 KVRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEE 80 (182)
T ss_pred ChhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHh
Confidence 4677888888888776 333444555544432 23346899999999999999999876543221
Q ss_pred ---------------hhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCccccc-CchHHHHHHHHHHhhcCchh
Q 001442 417 ---------------NQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILT-PYLDGIVSKLLVLLQNGKQM 480 (1076)
Q Consensus 417 ---------------~~~~~~ll~~l~~~l~~~~~~~v~~~a~~aL~~l~~~~~~~~l~-~~l~~ll~~l~~~l~~~~~~ 480 (1076)
...+..+=..|+..|+...+..+....+.++..++.+.+-+.+. .+++.++..+...+.+.+..
T Consensus 81 ~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~ 160 (182)
T PF13251_consen 81 SKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPN 160 (182)
T ss_pred cCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCc
Confidence 01122233345556665467778889999999999887654443 36778888888899999999
Q ss_pred HHHHHHHHHHHHHHHh
Q 001442 481 VQEGALTALASVADSS 496 (1076)
Q Consensus 481 v~~~al~ai~~l~~~~ 496 (1076)
++..++.++|.+....
T Consensus 161 v~v~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 161 VRVAALSCLGALLSVQ 176 (182)
T ss_pred HHHHHHHHHHHHHcCC
Confidence 9999999999987653
No 124
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=97.36 E-value=0.00026 Score=45.66 Aligned_cols=30 Identities=50% Similarity=0.639 Sum_probs=27.3
Q ss_pred HHHHHHhhccCCChhHHhhhhHHHHHHHhh
Q 001442 886 YLPFLLEACNDENQDVRQAAVYGLGVCAEF 915 (1076)
Q Consensus 886 ll~~l~~~l~~~~~~vr~~a~~~lg~l~~~ 915 (1076)
++|.+++.++|+++.||.+|++++|.++++
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 589999999999999999999999999976
No 125
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.35 E-value=0.16 Score=58.59 Aligned_cols=154 Identities=16% Similarity=0.132 Sum_probs=108.2
Q ss_pred HHHHHHHHhhcC-CChhHHHHHHHHHHHHHhhcHHHHHHhHH-HHHHHHHhhCCC-CChhHHHHHHHHHHHhhhhhchhH
Q 001442 339 VASEQLPAYLAA-PEWQKHHAALIALAQIAEGCAKVMVKNLE-QVLSMVLNSFRD-PHPRVRWAAINAIGQLSTDLGPDL 415 (1076)
Q Consensus 339 ~l~~~l~~~l~~-~~~~~r~aal~~l~~l~~~~~~~~~~~l~-~i~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~~~ 415 (1076)
.++|.+...+++ .+.....-|+.||..+.+.++....-.++ ..+|.++..|.- +--.|-+.++.++..++..-+..+
T Consensus 211 slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~Ai 290 (1051)
T KOG0168|consen 211 SLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPKAI 290 (1051)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccHHH
Confidence 355555566654 36788889999999999998864432222 256666655532 334577778888888887655443
Q ss_pred HhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHH
Q 001442 416 QNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADS 495 (1076)
Q Consensus 416 ~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~aL~~l~~~~~~~~l~~~l~~ll~~l~~~l~~~~~~v~~~al~ai~~l~~~ 495 (1076)
. -..-+.+++..|.= =...+|..|+....+.|..+.++.+ .|+-..+|.|..+|+..+...-+.++.|+..++..
T Consensus 291 L---~AG~l~a~LsylDF-FSi~aQR~AlaiaaN~Cksi~sd~f-~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~ 365 (1051)
T KOG0168|consen 291 L---QAGALSAVLSYLDF-FSIHAQRVALAIAANCCKSIRSDEF-HFVMEALPLLTPLLSYQDKKPIESVCICLTRIADG 365 (1051)
T ss_pred H---hcccHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCCCccc-hHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHh
Confidence 2 12233334444432 2356788899999999999988765 46677899999999999999999999999999987
Q ss_pred hH
Q 001442 496 SQ 497 (1076)
Q Consensus 496 ~~ 497 (1076)
..
T Consensus 366 f~ 367 (1051)
T KOG0168|consen 366 FQ 367 (1051)
T ss_pred cc
Confidence 64
No 126
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.34 E-value=0.69 Score=55.91 Aligned_cols=132 Identities=16% Similarity=0.178 Sum_probs=97.1
Q ss_pred hHHHHHHHHHHHcCCCcchHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhcH-----HHHHHhHH-HHHHHHHhhCCCC
Q 001442 319 VGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCA-----KVMVKNLE-QVLSMVLNSFRDP 392 (1076)
Q Consensus 319 ~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~-----~~~~~~l~-~i~~~l~~~l~d~ 392 (1076)
.-...|..++..+| +-..+.+-. +...+.+++...|.+.+-++|.+....- +...+.+. .++..+...+.|-
T Consensus 294 ~v~~fL~elS~~~P-~l~~~~l~~-lv~lld~es~~lRnavlei~~n~V~~~l~d~e~~~~sk~~r~~~le~l~erl~Dv 371 (1251)
T KOG0414|consen 294 IVGNFLVELSERVP-KLMLRQLTL-LVDLLDSESYTLRNAVLEICANLVASELRDEELEEMSKSLRDELLELLRERLLDV 371 (1251)
T ss_pred hHHHHHHHHHHHhH-HHHHHHHHH-HHHhcCCchHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHhhcc
Confidence 34456677777665 444444333 3346778889999999999998765422 12223344 4788999999999
Q ss_pred ChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCC
Q 001442 393 HPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCT 455 (1076)
Q Consensus 393 ~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~aL~~l~~~~~ 455 (1076)
++.||..++..+.+++..-... ...+..++...+..+.| .+.-||..|..-+..+....+
T Consensus 372 sa~vRskVLqv~~~l~~~~s~p--~~~~~eV~~la~grl~D-kSslVRk~Ai~Ll~~~L~~~P 431 (1251)
T KOG0414|consen 372 SAYVRSKVLQVFRRLFQQHSIP--LGSRTEVLELAIGRLED-KSSLVRKNAIQLLSSLLDRHP 431 (1251)
T ss_pred cHHHHHHHHHHHHHHHHccCCC--ccHHHHHHHHHhccccc-ccHHHHHHHHHHHHHHHhcCC
Confidence 9999999999999887643221 35678899999999999 899999999999999987653
No 127
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.32 E-value=0.37 Score=52.42 Aligned_cols=139 Identities=17% Similarity=0.210 Sum_probs=102.5
Q ss_pred hhhcCCccccc--CchHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHhHhhHHhhHhhhHHHHHHHHhccCCchhhhhH
Q 001442 450 FSENCTPEILT--PYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLR 527 (1076)
Q Consensus 450 l~~~~~~~~l~--~~l~~ll~~l~~~l~~~~~~v~~~al~ai~~l~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~~~~lr 527 (1076)
|.+..++..+. +.+..++..+..-..+++..+|..++.+|+..+..+++....|...++..+...+-+.. +..+.
T Consensus 241 ~ael~~~~~l~~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~---~~~V~ 317 (533)
T KOG2032|consen 241 FAELKRPKELDKTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDL---NEEVQ 317 (533)
T ss_pred HHHHhCcccccccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCC---ccHHH
Confidence 33444443343 67788888888888899999999999999999999999999999999998888775432 24566
Q ss_pred HHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHhcCCCCCCChhhHHHHHHHHHHHHHhccCcccch
Q 001442 528 AKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYM 594 (1076)
Q Consensus 528 ~~a~~~l~~i~~~~g~~~~~~~~~~ii~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l 594 (1076)
-.++.|+..+..........+|+-.+---+.+++.+ .++..|...+..|+.++...|...+.++
T Consensus 318 leam~~Lt~v~~~~~~~~l~~~~l~ialrlR~l~~s---e~~~~R~aa~~Lfg~L~~l~g~~~e~~F 381 (533)
T KOG2032|consen 318 LEAMKCLTMVLEKASNDDLESYLLNIALRLRTLFDS---EDDKMRAAAFVLFGALAKLAGGGWEEFF 381 (533)
T ss_pred HHHHHHHHHHHHhhhhcchhhhchhHHHHHHHHHHh---cChhhhhhHHHHHHHHHHHcCCCchhhh
Confidence 678888877765443356777766665555566554 3556788888899999998887655544
No 128
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=97.29 E-value=0.051 Score=58.06 Aligned_cols=197 Identities=17% Similarity=0.144 Sum_probs=130.0
Q ss_pred HhhCCCCChhHHHHHHHHHHHhhh-hhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCc-ccccCch
Q 001442 386 LNSFRDPHPRVRWAAINAIGQLST-DLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTP-EILTPYL 463 (1076)
Q Consensus 386 ~~~l~d~~~~vr~~a~~~l~~l~~-~~~~~~~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~aL~~l~~~~~~-~~l~~~l 463 (1076)
+..+.+.....|.+++..+..+.. ...+++.......++..+.+.++. +...-+.-|+.++.-++-.++. ......+
T Consensus 49 Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkk-g~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~ 127 (309)
T PF05004_consen 49 IDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKK-GKSEEQALAARALALLALTLGAGEDSEEIF 127 (309)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhcc-CCHHHHHHHHHHHHHHhhhcCCCccHHHHH
Confidence 344567789999999988877764 334555567788899999999987 5555566777888888766541 1234567
Q ss_pred HHHHHHHHHHhhcCc--hhHHHHHHHHHHHHHHHhHhhHHhhHh--hhHHHHHHH--HhccC------CchhhhhHHHHH
Q 001442 464 DGIVSKLLVLLQNGK--QMVQEGALTALASVADSSQEHFQKYYD--AVMPFLKAI--LVNAT------DKSNRMLRAKSM 531 (1076)
Q Consensus 464 ~~ll~~l~~~l~~~~--~~v~~~al~ai~~l~~~~~~~~~~~~~--~i~~~L~~~--l~~~~------~~~~~~lr~~a~ 531 (1076)
..+.|.|.+.+.+.. ..+|..++.|+|.++...+.....+.. ..|..++.. ..... ..+...+...|+
T Consensus 128 ~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL 207 (309)
T PF05004_consen 128 EELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAAL 207 (309)
T ss_pred HHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHH
Confidence 888888888888764 467778888999988876654332221 233322221 11111 122356888999
Q ss_pred HHHHHHHHHhchhhhhhhHHHHHHHHHHHhcCCCCCCChhhHHHHHHHHHHHHHh
Q 001442 532 ECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCL 586 (1076)
Q Consensus 532 ~~l~~i~~~~g~~~~~~~~~~ii~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 586 (1076)
.+++.+...++...+...+...++.+..+.++ .+..+|-.+-.++.-+.+..
T Consensus 208 ~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s---~d~~VRiAAGEaiAll~E~~ 259 (309)
T PF05004_consen 208 SAWALLLTTLPDSKLEDLLEEALPALSELLDS---DDVDVRIAAGEAIALLYELA 259 (309)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHh
Confidence 99999998888656776677788887776554 23446666655555444443
No 129
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=97.29 E-value=0.27 Score=53.91 Aligned_cols=131 Identities=24% Similarity=0.237 Sum_probs=86.5
Q ss_pred hhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhh---CCCCChhHHHHHHHHHHHhhhhhch------------hHHh
Q 001442 353 WQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNS---FRDPHPRVRWAAINAIGQLSTDLGP------------DLQN 417 (1076)
Q Consensus 353 ~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~---l~d~~~~vr~~a~~~l~~l~~~~~~------------~~~~ 417 (1076)
-..|.||...+..+++...+...+.+...+..++.. -...+++-+.+|+..++.++..... ++..
T Consensus 225 ~TrR~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~ 304 (370)
T PF08506_consen 225 DTRRRAACDFLRSLCKKFEKQVTSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVD 304 (370)
T ss_dssp -SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHH
T ss_pred CCcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHH
Confidence 457889999999998876655444444444444432 1245788999999999999865421 1211
Q ss_pred hhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCchhHHHHHHHHH
Q 001442 418 QFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTAL 489 (1076)
Q Consensus 418 ~~~~~ll~~l~~~l~~~~~~~v~~~a~~aL~~l~~~~~~~~l~~~l~~ll~~l~~~l~~~~~~v~~~al~ai 489 (1076)
=+...++|.|. .-.+ ..|-++..|++.+..|-..++++ .+..++|.+...|.+++.-|+..|..||
T Consensus 305 Ff~~~v~peL~-~~~~-~~piLka~aik~~~~Fr~~l~~~----~l~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 305 FFSQHVLPELQ-PDVN-SHPILKADAIKFLYTFRNQLPKE----QLLQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHHTCHHHH--SS--S-HHHHHHHHHHHHHHGGGS-HH----HHHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHHhHHHhc-ccCC-CCcchHHHHHHHHHHHHhhCCHH----HHHHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 13445566665 2223 57889999999999998887643 5678999999999999988887766654
No 130
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=97.28 E-value=0.0027 Score=60.14 Aligned_cols=147 Identities=14% Similarity=0.135 Sum_probs=98.8
Q ss_pred chHHHHHHHHHhhc-CCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhC-----CCCChhHHHHHHHHHHHhhh
Q 001442 336 IVPVASEQLPAYLA-APEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSF-----RDPHPRVRWAAINAIGQLST 409 (1076)
Q Consensus 336 ~~~~l~~~l~~~l~-~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l-----~d~~~~vr~~a~~~l~~l~~ 409 (1076)
-.|.+++.+...++ +.+|..|..++.++|.+..--+...+ .+.... .+.+........ +..
T Consensus 7 ~yP~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k--------~~~~~~~~~~~~~~~~~~~~~~l-----~~~ 73 (160)
T PF11865_consen 7 DYPELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHK--------SIQKSLDSKSSENSNDESTDISL-----PMM 73 (160)
T ss_pred HhHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHh--------cccccCCccccccccccchhhHH-----hhc
Confidence 45777887777776 35699999999999998764332111 111111 112222222222 111
Q ss_pred hhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCchhHHHHHHHHH
Q 001442 410 DLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTAL 489 (1076)
Q Consensus 410 ~~~~~~~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~aL~~l~~~~~~~~l~~~l~~ll~~l~~~l~~~~~~v~~~al~ai 489 (1076)
...+...+-|...++..|+..|+|..-..-+..+..++..+++..+.+. .||++.++|.++..+++.+...++..+.-+
T Consensus 74 ~~~~~~ee~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~c-v~~L~~viP~~l~~i~~~~~~~~e~~~~qL 152 (160)
T PF11865_consen 74 GISPSSEEYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKC-VPYLPQVIPIFLRVIRTCPDSLREFYFQQL 152 (160)
T ss_pred cCCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCc-hhHHHHHhHHHHHHHHhCCHHHHHHHHHHH
Confidence 2222222345667888899999994334455678899999998888775 799999999999999988889999999999
Q ss_pred HHHHHHh
Q 001442 490 ASVADSS 496 (1076)
Q Consensus 490 ~~l~~~~ 496 (1076)
+.++...
T Consensus 153 ~~lv~iv 159 (160)
T PF11865_consen 153 ADLVSIV 159 (160)
T ss_pred HHHHHHh
Confidence 8887643
No 131
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=97.24 E-value=0.00042 Score=44.69 Aligned_cols=30 Identities=33% Similarity=0.664 Sum_probs=26.8
Q ss_pred HHHHHHhhCCCCChhHHHHHHHHHHHhhhh
Q 001442 381 VLSMVLNSFRDPHPRVRWAAINAIGQLSTD 410 (1076)
Q Consensus 381 i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~ 410 (1076)
++|.+++.++|+++.||.+|+++++.++++
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 578999999999999999999999999875
No 132
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.23 E-value=1.2 Score=56.57 Aligned_cols=133 Identities=23% Similarity=0.320 Sum_probs=102.0
Q ss_pred HHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccC
Q 001442 382 LSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTP 461 (1076)
Q Consensus 382 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~aL~~l~~~~~~~~l~~ 461 (1076)
...+.+.+..++|..|-++..++++++...+. ..+...+...++..+.+..++..|..-..+++.+.+..+.-.-..
T Consensus 878 ~~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~---~~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~q 954 (2067)
T KOG1822|consen 878 LTLIVNSLINPNPKLRCAAAEALARLAQVVGS---APFVASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSGQ 954 (2067)
T ss_pred HHHHhhhhccCChHHHHHHHHHHHHHHHhccc---cchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCch
Confidence 45667788899999999999999999987654 457778888888888875667777777777777777665322234
Q ss_pred chHHHHHHHHHHhhcCch-hHHHHHHHHHHHHHHHhHhhHHhhHhhhHHHHHHHHhc
Q 001442 462 YLDGIVSKLLVLLQNGKQ-MVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVN 517 (1076)
Q Consensus 462 ~l~~ll~~l~~~l~~~~~-~v~~~al~ai~~l~~~~~~~~~~~~~~i~~~L~~~l~~ 517 (1076)
++..-+..++.+.++++. .|+..++.++.-++...++-+.-|....+..+...+..
T Consensus 955 hl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~lLls 1011 (2067)
T KOG1822|consen 955 HLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLKLLLS 1011 (2067)
T ss_pred hcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHHHcCC
Confidence 666777788888887765 99999999999999988887766776666666665543
No 133
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.22 E-value=0.042 Score=63.31 Aligned_cols=188 Identities=14% Similarity=0.236 Sum_probs=138.9
Q ss_pred hcCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHH
Q 001442 348 LAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPAL 427 (1076)
Q Consensus 348 l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l 427 (1076)
+.++....|-+|+..+..+++.....-.-....++...+..+.|.++.|--.|...+..+|+. |-+.++|.+
T Consensus 736 l~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcev--------y~e~il~dL 807 (982)
T KOG4653|consen 736 LHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEV--------YPEDILPDL 807 (982)
T ss_pred hcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHh--------cchhhHHHH
Confidence 345667789999999999998543222234456889999999999999998888888888864 344566666
Q ss_pred HhhccC---CCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHhHhhHHhhH
Q 001442 428 AGAMDD---FQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYY 504 (1076)
Q Consensus 428 ~~~l~~---~~~~~v~~~a~~aL~~l~~~~~~~~l~~~l~~ll~~l~~~l~~~~~~v~~~al~ai~~l~~~~~~~~~~~~ 504 (1076)
...-.+ .+.++-+...-.++.+++...+ +.+..|...++..++..+++++...|..++..+|.++....-....++
T Consensus 808 ~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~G-el~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~ 886 (982)
T KOG4653|consen 808 SEEYLSEKKKLQTDYRLKVGEAILKVAQALG-ELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDFF 886 (982)
T ss_pred HHHHHhcccCCCccceehHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHH
Confidence 653221 1212334444588888888887 456789999999999999999888899999999999987665445577
Q ss_pred hhhHHHHHHHHhccCCchhhhhHHHHHHHHHHHHHHhchhhhhh
Q 001442 505 DAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRD 548 (1076)
Q Consensus 505 ~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~g~~~~~~ 548 (1076)
..+...+...... ++...+|..|+..+..+-.+.| +...|
T Consensus 887 ~ev~~~Il~l~~~---d~s~~vRRaAv~li~~lL~~tg-~dlLp 926 (982)
T KOG4653|consen 887 HEVLQLILSLETT---DGSVLVRRAAVHLLAELLNGTG-EDLLP 926 (982)
T ss_pred HHHHHHHHHHHcc---CCchhhHHHHHHHHHHHHhccc-hhhHH
Confidence 7777777766543 3456788889999999888888 45556
No 134
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=97.20 E-value=0.79 Score=53.84 Aligned_cols=138 Identities=14% Similarity=0.175 Sum_probs=109.5
Q ss_pred hHHhHHHHHHhhccCCChhHHhhhhHHHHHHHhhcC-CCchHHHHHHHHHHHHhhcCCCCCChhhhhHHHHHHHHHHHHH
Q 001442 882 YYETYLPFLLEACNDENQDVRQAAVYGLGVCAEFGG-SVVKPLVGEALSRLNVVIRHPNALQPENLMAYDNAVSALGKIC 960 (1076)
Q Consensus 882 ~~~~ll~~l~~~l~~~~~~vr~~a~~~lg~l~~~~~-~~~~~~~~~il~~L~~~l~~~~~~~~~~~~~~~na~~al~~i~ 960 (1076)
++.+++|.+...+......+|.+-..++..+..+.| +.+.|.++.+++.|.+.|.-++ ..+|-.+..++-.++
T Consensus 864 fF~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D------~~v~vstl~~i~~~l 937 (1030)
T KOG1967|consen 864 FFCDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPD------VIVRVSTLRTIPMLL 937 (1030)
T ss_pred HHHhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCc------cchhhhHhhhhhHHH
Confidence 788999999999997788899999999999988877 5678999999999999998774 356667778888888
Q ss_pred hhcCCCC--CHhhHHHHHHhhCCCCCc---HHHHHHHHHHHHHHHhhcCCcccCcCcCchhhHHHHHHHHhcCC
Q 001442 961 QFHRDSI--DAAQVVPAWLNCLPIKGD---LIEAKIVHEQLCSMVERSDSDLLGPNHQYLPKIVSVFAEILCGK 1029 (1076)
Q Consensus 961 ~~~~~~~--~~~~~l~~~l~~lp~~~d---~~e~~~~~~~l~~li~~~~~~~~~~~~~~l~~i~~~~~~~l~~~ 1029 (1076)
...+... ++++++|.+|..=.. .| ......+..+|..|-+..|+..+-+ +-|++++.+...|+.+
T Consensus 938 ~~~~tL~t~~~~Tlvp~lLsls~~-~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~---fr~~Vl~al~k~LdDk 1007 (1030)
T KOG1967|consen 938 TESETLQTEHLSTLVPYLLSLSSD-NDNNMMVVREDALQCLNALTRRLPTKSLLS---FRPLVLRALIKILDDK 1007 (1030)
T ss_pred HhccccchHHHhHHHHHHHhcCCC-CCcchhHHHHHHHHHHHHHhccCCCccccc---ccHHHHHHhhhccCcH
Confidence 8777766 799999998875422 22 3456678888888887555544444 7899999999999743
No 135
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=97.19 E-value=0.015 Score=68.96 Aligned_cols=160 Identities=18% Similarity=0.218 Sum_probs=132.2
Q ss_pred HHHHHHHhhcCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhh
Q 001442 340 ASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQF 419 (1076)
Q Consensus 340 l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 419 (1076)
+...+.-...+.|-++-.-++.+|..++........++...+.+.++..+.+..+.+|.++..++-.++.. ..
T Consensus 296 l~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns-------~~ 368 (815)
T KOG1820|consen 296 LGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNS-------TP 368 (815)
T ss_pred HHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhc-------cc
Confidence 33333344557788888889999999999998888889999999999999999999999999999988862 34
Q ss_pred hhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCccc-ccCchHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHhHh
Q 001442 420 HPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEI-LTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQE 498 (1076)
Q Consensus 420 ~~~ll~~l~~~l~~~~~~~v~~~a~~aL~~l~~~~~~~~-l~~~l~~ll~~l~~~l~~~~~~v~~~al~ai~~l~~~~~~ 498 (1076)
+..+.+.++..+.+ ++|.++..+...+...+...++.. -..-...+++.+....++.+..||..++.+++.+....|+
T Consensus 369 l~~~~~~I~e~lk~-knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge 447 (815)
T KOG1820|consen 369 LSKMSEAILEALKG-KNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGE 447 (815)
T ss_pred HHHHHHHHHHHhcC-CChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhH
Confidence 56788889999999 999999999999999998877432 2345778999999999999999999999999999999997
Q ss_pred h-HHhhHhhh
Q 001442 499 H-FQKYYDAV 507 (1076)
Q Consensus 499 ~-~~~~~~~i 507 (1076)
. +..|+..+
T Consensus 448 ~~~~k~L~~~ 457 (815)
T KOG1820|consen 448 EVFKKLLKDL 457 (815)
T ss_pred HHHHHHHHhh
Confidence 5 33444443
No 136
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=97.17 E-value=0.19 Score=59.30 Aligned_cols=308 Identities=13% Similarity=0.165 Sum_probs=160.3
Q ss_pred hhHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhCCcchHhHH--hhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Q 001442 143 ELLPFMFQCVSSDSVKLQESAFLIFAQLIINFIQCLTSSADRDRF--QDLLPLMMRTLTESLNNGNEATAQEALELLIEL 220 (1076)
Q Consensus 143 ~ll~~l~~~~~~~~~~~r~~al~~L~~l~~~~~~~l~~~~~~~~~--~~l~p~~l~~l~~~~~~~~~~~~~~~~~~l~~l 220 (1076)
++++.|...+.+++...+..++++|..+. .++.....+ .+++|.+...+ .+ +..+..++.+|..+
T Consensus 331 giV~kL~kLl~s~~~~l~~~aLrlL~NLS-------fd~~~R~~mV~~GlIPkLv~LL----~d--~~~~~val~iLy~L 397 (708)
T PF05804_consen 331 GIVEKLLKLLPSENEDLVNVALRLLFNLS-------FDPELRSQMVSLGLIPKLVELL----KD--PNFREVALKILYNL 397 (708)
T ss_pred CCHHHHHHHhcCCCHHHHHHHHHHHHHhC-------cCHHHHHHHHHCCCcHHHHHHh----CC--CchHHHHHHHHHHh
Confidence 46677777777777777777777775541 011111111 23456555444 33 34556677777777
Q ss_pred HccCc--HHHHHhHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHhhcccchhhccchhhHHHHHHHHHHhhcCCCCC
Q 001442 221 AGTEP--RFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDD 298 (1076)
Q Consensus 221 ~~~~~--~~~~~~l~~l~~~l~~~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~dd 298 (1076)
+.... ..|. + .+.++.+++.+... .++.+....+.++..++...+.+..+++. +-++.++...++ ..
T Consensus 398 S~dd~~r~~f~-~-TdcIp~L~~~Ll~~-~~~~v~~eliaL~iNLa~~~rnaqlm~~g--~gL~~L~~ra~~----~~-- 466 (708)
T PF05804_consen 398 SMDDEARSMFA-Y-TDCIPQLMQMLLEN-SEEEVQLELIALLINLALNKRNAQLMCEG--NGLQSLMKRALK----TR-- 466 (708)
T ss_pred ccCHhhHHHHh-h-cchHHHHHHHHHhC-CCccccHHHHHHHHHHhcCHHHHHHHHhc--CcHHHHHHHHHh----cc--
Confidence 65321 1111 1 13444444443222 23444555566677777654333322221 122223322211 10
Q ss_pred ccccCCCCCCcccCCCCchhhHHHHHHHHHHHcCCC--cchHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhc-HH-HH
Q 001442 299 PLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGN--TIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGC-AK-VM 374 (1076)
Q Consensus 299 ~~~~~~~~e~~d~~e~~~~~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~-~~-~~ 374 (1076)
......++..++.+-|+. .+.+.+.+.+ ..+.+.+ .-+..+.++|.++.-. ++ ..
T Consensus 467 ------------------D~lLlKlIRNiS~h~~~~k~~f~~~i~~L~-~~v~~~~--~ee~~vE~LGiLaNL~~~~ld~ 525 (708)
T PF05804_consen 467 ------------------DPLLLKLIRNISQHDGPLKELFVDFIGDLA-KIVSSGD--SEEFVVECLGILANLTIPDLDW 525 (708)
T ss_pred ------------------cHHHHHHHHHHHhcCchHHHHHHHHHHHHH-HHhhcCC--cHHHHHHHHHHHHhcccCCcCH
Confidence 023445677777665421 1223333333 2333332 2345666666665432 11 11
Q ss_pred HHhHH--HHHHHHHhhCCCC--ChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCC-CChhHHHHHHHHHHH
Q 001442 375 VKNLE--QVLSMVLNSFRDP--HPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDF-QNPRVQAHAASAVLN 449 (1076)
Q Consensus 375 ~~~l~--~i~~~l~~~l~d~--~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~-~~~~v~~~a~~aL~~ 449 (1076)
...+. .++|.+...|... ++.+.-.++..+|.++..-.... .-.-..+++.++..|... .+.+.....++++..
T Consensus 526 ~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d~~~A~-lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ 604 (708)
T PF05804_consen 526 AQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASDPECAP-LLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQ 604 (708)
T ss_pred HHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCCHHHHH-HHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHH
Confidence 12222 3566666665422 33455566778888775422111 112346778887777652 245666788888888
Q ss_pred hhhcCCcc-cccCchHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHhH
Q 001442 450 FSENCTPE-ILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQ 497 (1076)
Q Consensus 450 l~~~~~~~-~l~~~l~~ll~~l~~~l~~~~~~v~~~al~ai~~l~~~~~ 497 (1076)
|+.+-... .+. .-..+...++.++.+.+..+|+.+=.++..++..-+
T Consensus 605 ll~h~~tr~~ll-~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~d~ 652 (708)
T PF05804_consen 605 LLFHEETREVLL-KETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEYDE 652 (708)
T ss_pred HHcChHHHHHHH-hccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCH
Confidence 88763321 111 114577889999999999999988888888777543
No 137
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=97.17 E-value=0.73 Score=52.91 Aligned_cols=340 Identities=14% Similarity=0.113 Sum_probs=176.2
Q ss_pred HHHHHHHHHHHHHHHHhhhcccccHHHHHHHhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC-CHHHHHHH
Q 001442 648 EEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEKGLAPGR-NESYVKQL 726 (1076)
Q Consensus 648 ~~k~~A~~~l~~i~~~~~~~~~p~l~~~~~~l~~~l~~~~~~~vr~~a~~~l~~L~~~~~~~~~~~~~~~~-~~~~~~~~ 726 (1076)
.+|..|+.-|+......+- .-++++....--+++.....+.|.++...+..++..- +. ....-..+
T Consensus 5 ~~R~~a~~~l~~~i~~~~~---~~i~~iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~----------~~~~~~~R~~f 71 (464)
T PF11864_consen 5 SERIKAAEELCESIQKYPL---SSIEEIWYAAKDLIDPNQPSEARRAALELLIACIKRQ----------DSSSGLMRAEF 71 (464)
T ss_pred HHHHHHHHHHHHHHHhCCc---hHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHcc----------ccccHHHHHHH
Confidence 3455555555555544322 4456677777777776556789999999987776532 11 11112233
Q ss_pred HHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHhHH-HHHHhhcCCCCChHhh
Q 001442 727 SDFIIPALVEALHKEPDTEICASMLDSLNECIQISGPLLDEGQVRSIVDEIKQVITASSSRKR-ERAERAKAEDFDAEES 805 (1076)
Q Consensus 727 ~~~i~~~l~~~l~~~~~~~~~~~~l~~l~~~i~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~-~~~~~~~~ed~d~~~~ 805 (1076)
+..+ .....++.....++++..+-. -|+.+.. .-.++.+.+..-+....+..+ .+..............
T Consensus 72 F~~I--------~~~~~~~d~~~~l~aL~~LT~-~Grdi~~-~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~ 141 (464)
T PF11864_consen 72 FRDI--------SDPSNDDDFDLRLEALIALTD-NGRDIDF-FEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGL 141 (464)
T ss_pred HHHH--------hcCCCchhHHHHHHHHHHHHc-CCcCchh-cccchHHHHHHHHHHHHHHHHHHHHHhhcccccccccc
Confidence 3322 333333323334444444433 3443211 122222333332322221000 0000000000000000
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHhhhchh-hhHHHHHHhHhhhhcCCCCHHHHHHHHHHHHHHHHHhhhhhHhhHH
Q 001442 806 ELIKEENEQEEEVFDQVGEILGTLIKTFKAAFL-PFFDELSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREAALKYYE 884 (1076)
Q Consensus 806 ~~~~e~~e~~~~~~~~~~~~l~~l~~~~~~~~~-~~~~~l~~~l~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~ 884 (1076)
. ..+.+.........++..++|.....+- ..+..++..+........+..+-..++.++..++.++.-. ...+.
T Consensus 142 ~----~~~~~~~~l~~ll~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP-~~sl~ 216 (464)
T PF11864_consen 142 S----NLDNEESNLSDLLQFLVNVIKFNFNYLDEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITYGDIP-SESLS 216 (464)
T ss_pred c----cccchhhhHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCC-hHHHH
Confidence 0 0001233344555666666666554443 4455677766666555556666778899999999874322 23455
Q ss_pred hHHHHHHhhccCCChhHHhhhhHHHHHHHhhcCCCchHHHHHHHHHHHHhhcCCCCCChhhhhHHHHHHHHHHHHHhhcC
Q 001442 885 TYLPFLLEACNDENQDVRQAAVYGLGVCAEFGGSVVKPLVGEALSRLNVVIRHPNALQPENLMAYDNAVSALGKICQFHR 964 (1076)
Q Consensus 885 ~ll~~l~~~l~~~~~~vr~~a~~~lg~l~~~~~~~~~~~~~~il~~L~~~l~~~~~~~~~~~~~~~na~~al~~i~~~~~ 964 (1076)
.++..+....... +.++.+-.++..++... .-...+..|..+|.+++.....+..+..+|+..+++++...+
T Consensus 217 ~~i~vLCsi~~~~--~l~~~~w~~m~nL~~S~------~g~~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~ 288 (464)
T PF11864_consen 217 PCIEVLCSIVNSV--SLCKPSWRTMRNLLKSH------LGHSAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSG 288 (464)
T ss_pred HHHHHHhhHhccc--ccchhHHHHHHHHHcCc------cHHHHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccc
Confidence 6666666553333 55666666677776532 234566777777743333333456677799999999998774
Q ss_pred CC----CCHhh--HHHHHHhhCCCCCcHHHHHHHHHHHHHHH-hhcCCcccCcCcCchhhHHHHHHHHhc
Q 001442 965 DS----IDAAQ--VVPAWLNCLPIKGDLIEAKIVHEQLCSMV-ERSDSDLLGPNHQYLPKIVSVFAEILC 1027 (1076)
Q Consensus 965 ~~----~~~~~--~l~~~l~~lp~~~d~~e~~~~~~~l~~li-~~~~~~~~~~~~~~l~~i~~~~~~~l~ 1027 (1076)
+. ++... ++|.+...|..... ...-.+...+.+++ ....+..... .-+.++.++.....
T Consensus 289 ~~~~~~l~~~~~~vl~sl~~al~~~~~-~v~~eIl~~i~~ll~~~~~~~l~~~---~W~~~~~i~~~~~~ 354 (464)
T PF11864_consen 289 EQGYPSLPFSPSSVLPSLLNALKSNSP-RVDYEILLLINRLLDGKYGRELSEE---DWDIILDIIEEIFD 354 (464)
T ss_pred cCCcceecccHHHHHHHHHHHHhCCCC-eehHHHHHHHHHHHhHhhhhhhccc---CchHHHHHHHHHHh
Confidence 43 23444 99999999975333 33445556666777 5555544333 34556666665544
No 138
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.16 E-value=0.76 Score=52.98 Aligned_cols=198 Identities=13% Similarity=0.122 Sum_probs=122.3
Q ss_pred chHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhH
Q 001442 336 IVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDL 415 (1076)
Q Consensus 336 ~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~ 415 (1076)
....+++++..++.+....+-.-|..++..+....+..+.+ -+..+...+..+.+.+|.+|.++|.+++...+..+
T Consensus 242 ~~s~~~~fl~s~l~~K~emV~~EaArai~~l~~~~~r~l~p----avs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v 317 (865)
T KOG1078|consen 242 ADSPLFPFLESCLRHKSEMVIYEAARAIVSLPNTNSRELAP----AVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAV 317 (865)
T ss_pred chhhHHHHHHHHHhchhHHHHHHHHHHHhhccccCHhhcch----HHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCccc
Confidence 34567888888998877766666666666655544433333 55666667789999999999999999987654332
Q ss_pred HhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHH
Q 001442 416 QNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADS 495 (1076)
Q Consensus 416 ~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~aL~~l~~~~~~~~l~~~l~~ll~~l~~~l~~~~~~v~~~al~ai~~l~~~ 495 (1076)
. ..=..+-..+.| .+ |.-|..|+..+.+....+ -.+.+|..+...+.+-+...+..++.++.+++..
T Consensus 318 ~-----~cN~elE~lItd-~N---rsIat~AITtLLKTG~e~----sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~ 384 (865)
T KOG1078|consen 318 T-----VCNLDLESLITD-SN---RSIATLAITTLLKTGTES----SVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLK 384 (865)
T ss_pred c-----ccchhHHhhhcc-cc---cchhHHHHHHHHHhcchh----HHHHHHHHHHHHHHhccccceEEeHHHHHHHHhh
Confidence 1 111122334445 44 344566777777665433 3456777777777766666777778888888776
Q ss_pred hHhhHHhhHhhhHHHHHHHHhccCCchhhhhHHHHHHHHHHHHHHhchhhhhhhHHHHHHHHH
Q 001442 496 SQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLM 558 (1076)
Q Consensus 496 ~~~~~~~~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~g~~~~~~~~~~ii~~l~ 558 (1076)
.+.. ...+|++|...+... .....+...++++..++.... +.=.+-+..++.++.
T Consensus 385 fp~k----~~~~m~FL~~~Lr~e---Gg~e~K~aivd~Ii~iie~~p-dsKe~~L~~LCefIE 439 (865)
T KOG1078|consen 385 FPRK----HTVMMNFLSNMLREE---GGFEFKRAIVDAIIDIIEENP-DSKERGLEHLCEFIE 439 (865)
T ss_pred ccHH----HHHHHHHHHHHHHhc---cCchHHHHHHHHHHHHHHhCc-chhhHHHHHHHHHHH
Confidence 5543 234566777766642 233456677788877776444 222233444444443
No 139
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=97.13 E-value=0.087 Score=54.58 Aligned_cols=225 Identities=12% Similarity=0.142 Sum_probs=145.4
Q ss_pred CchhhHHHHHHHHHHHcCCCcc----hHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCC
Q 001442 315 SNYSVGQECLDRLAIALGGNTI----VPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFR 390 (1076)
Q Consensus 315 ~~~~~a~~~l~~l~~~~~~~~~----~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~ 390 (1076)
..|.-|..+|..+...++++.+ +..++.++...+ .||..-..++.++..+.. +...-......++..+.....
T Consensus 14 ~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl--~D~~~~~~~l~gl~~L~~-~~~~~~~~~~~i~~~l~~~~~ 90 (262)
T PF14500_consen 14 IIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRL--DDHACVQPALKGLLALVK-MKNFSPESAVKILRSLFQNVD 90 (262)
T ss_pred HHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHh--ccHhhHHHHHHHHHHHHh-CcCCChhhHHHHHHHHHHhCC
Confidence 3566688888888777764333 344555555555 466666666888888773 222112334456666655443
Q ss_pred --CCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHH
Q 001442 391 --DPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVS 468 (1076)
Q Consensus 391 --d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~aL~~l~~~~~~~~l~~~l~~ll~ 468 (1076)
.--...|..+...+..+.+.....+ ...-..++..+++.++..++|+.-.-++..+..+..... +.++.+.++.
T Consensus 91 ~q~~~q~~R~~~~~ll~~l~~~~~~~l-~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~---~~~~~e~lFd 166 (262)
T PF14500_consen 91 VQSLPQSTRYAVYQLLDSLLENHREAL-QSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFD---ISEFAEDLFD 166 (262)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHhHHHH-HhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcc---cchhHHHHHH
Confidence 2345689999999999888766555 455567788888888876789888888888888887776 3566666666
Q ss_pred HHHHHh----h----cCc----hhHHHHHHHHHHHHHHHhHhhHHhhHhhhHHHHHHHHhccCCchhhhhHHHHHHHHHH
Q 001442 469 KLLVLL----Q----NGK----QMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISL 536 (1076)
Q Consensus 469 ~l~~~l----~----~~~----~~v~~~al~ai~~l~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~ 536 (1076)
.+.... + ++. .+++.....|+.+ .+. |.+..+|.|.+.+... ....|..+++++..
T Consensus 167 ~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s-----~~~---fa~~~~p~LleKL~s~----~~~~K~D~L~tL~~ 234 (262)
T PF14500_consen 167 VFSCYFPITFRPPPNDPYGITREDLKRALRNCLSS-----TPL---FAPFAFPLLLEKLDST----SPSVKLDSLQTLKA 234 (262)
T ss_pred HhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcC-----cHh---hHHHHHHHHHHHHcCC----CcHHHHHHHHHHHH
Confidence 554432 1 111 2344444444432 222 4456788888887642 23467788899999
Q ss_pred HHHHhchhhhhhhHHHHHHHHH
Q 001442 537 VGMAVGKDKFRDDAKQVMEVLM 558 (1076)
Q Consensus 537 i~~~~g~~~~~~~~~~ii~~l~ 558 (1076)
.....|.+.+.+|...+-+.+.
T Consensus 235 c~~~y~~~~~~~~~~~iw~~lk 256 (262)
T PF14500_consen 235 CIENYGADSLSPHWSTIWNALK 256 (262)
T ss_pred HHHHCCHHHHHHHHHHHHHHHH
Confidence 8888888778888777766654
No 140
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=97.06 E-value=0.0078 Score=57.02 Aligned_cols=123 Identities=16% Similarity=0.068 Sum_probs=89.1
Q ss_pred HHHHHhHhhhhcCCCCHHHHHHHHHHHHHHHHH-hhhhhHhhHHhHHHHHHhhccCCChhHHhhhhHHHHHH---HhhcC
Q 001442 842 DELSSYLTPMWGKDKTAEERRIAICIFDDVAEQ-CREAALKYYETYLPFLLEACNDENQDVRQAAVYGLGVC---AEFGG 917 (1076)
Q Consensus 842 ~~l~~~l~~~l~~~~~~~~r~~al~~l~~l~~~-~~~~~~~~~~~ll~~l~~~l~~~~~~vr~~a~~~lg~l---~~~~~ 917 (1076)
+.++|.+..-++ .....-|..|...+.++++. .+..+.|.++++++.+-.+++..+++|..++..+|-.+ ....|
T Consensus 37 ~~~Lpif~dGL~-Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG 115 (183)
T PF10274_consen 37 HHYLPIFFDGLR-ETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVG 115 (183)
T ss_pred hhHHHHHHhhhh-ccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhh
Confidence 345666665553 23334577888999999999 77889999999999999999999999999999999999 66777
Q ss_pred CCchHHHHHHHHHHHHhhcCCCCCCh-----hhhhHHHHHHHHHHHHHhhcCC
Q 001442 918 SVVKPLVGEALSRLNVVIRHPNALQP-----ENLMAYDNAVSALGKICQFHRD 965 (1076)
Q Consensus 918 ~~~~~~~~~il~~L~~~l~~~~~~~~-----~~~~~~~na~~al~~i~~~~~~ 965 (1076)
+...||+.++++.+.-.........| ....+++-+-.++..+-.+.+.
T Consensus 116 ~aLvPyyrqLLp~ln~f~~k~~n~gd~i~y~~~~~~~dlI~etL~~lE~~GG~ 168 (183)
T PF10274_consen 116 EALVPYYRQLLPVLNLFKNKNVNLGDGIDYRKRKNLGDLIQETLELLERNGGP 168 (183)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHhcCh
Confidence 88999999999999854433211111 1234555555555555555443
No 141
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=97.04 E-value=0.02 Score=60.50 Aligned_cols=167 Identities=17% Similarity=0.209 Sum_probs=116.7
Q ss_pred CChhHHHHHH-HHHHHHHh-hcH-HHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhH---Hh--hhhhh
Q 001442 351 PEWQKHHAAL-IALAQIAE-GCA-KVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDL---QN--QFHPQ 422 (1076)
Q Consensus 351 ~~~~~r~aal-~~l~~l~~-~~~-~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~---~~--~~~~~ 422 (1076)
+.|+...+.. ..+.++.. ... ..+..+++-++|.++..++|.++.+|..++.++..+........ .. ...+.
T Consensus 87 ~~WK~~~~~~~~~l~w~v~~~~~~~~i~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v 166 (282)
T PF10521_consen 87 QPWKSNPGLASHVLSWIVLSQLDRPWISQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSV 166 (282)
T ss_pred CCcccCCcccHHHHHHHHHhcCCcchHHHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHH
Confidence 3677665333 56666655 433 35678899999999999999999999999999999998775433 11 23445
Q ss_pred hHHHHHhhcc--------CCCChhHHHHHHHHHHHhhhcCCcccccCc---hHHHH-HHHHHHhhc----CchhHHHHHH
Q 001442 423 VLPALAGAMD--------DFQNPRVQAHAASAVLNFSENCTPEILTPY---LDGIV-SKLLVLLQN----GKQMVQEGAL 486 (1076)
Q Consensus 423 ll~~l~~~l~--------~~~~~~v~~~a~~aL~~l~~~~~~~~l~~~---l~~ll-~~l~~~l~~----~~~~v~~~al 486 (1076)
+-+++...+. + ....+-..+..++..++.....+.-.++ +..++ ..++..+.. +...++...+
T Consensus 167 ~~~al~~~L~~LP~~tp~~-~s~~Ll~~ay~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll 245 (282)
T PF10521_consen 167 FEDALFPCLYYLPPITPED-ESLELLQAAYPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLL 245 (282)
T ss_pred HHHHHHHHhhcCCCCCCch-hhHHHHHHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHH
Confidence 5555666655 3 4566778888898888765321111222 33333 224443322 2478889999
Q ss_pred HHHHHHHHHhHhhHHhhHhhhHHHHHHHHhcc
Q 001442 487 TALASVADSSQEHFQKYYDAVMPFLKAILVNA 518 (1076)
Q Consensus 487 ~ai~~l~~~~~~~~~~~~~~i~~~L~~~l~~~ 518 (1076)
..+..++..+|.....|+..+++.+.+.+.+.
T Consensus 246 ~~l~~~i~~lGi~~~~hL~rii~~l~~~l~np 277 (282)
T PF10521_consen 246 QQLPPIIDELGISSVKHLQRIIPVLSQILENP 277 (282)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999987653
No 142
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=96.98 E-value=0.076 Score=60.12 Aligned_cols=272 Identities=14% Similarity=0.166 Sum_probs=135.6
Q ss_pred chhhHHHHHHHHHHHHHhcccCCCCcchhHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhCCcchHhHHhhhHHHHH
Q 001442 116 SAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLIINFIQCLTSSADRDRFQDLLPLMM 195 (1076)
Q Consensus 116 ~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~~~~~~~r~~al~~L~~l~~~~~~~l~~~~~~~~~~~l~p~~l 195 (1076)
.+...++.+++.|..+.+ .+| ..-.+.+..++.++.+++..+|..|++.|-.++.. -..+++.+.
T Consensus 34 g~~k~K~Laaq~I~kffk-~FP-~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~-------------~~~~v~kva 98 (556)
T PF05918_consen 34 GSPKEKRLAAQFIPKFFK-HFP-DLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKD-------------NPEHVSKVA 98 (556)
T ss_dssp S-HHHHHHHHHHHHHHHC-C-G-GGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T---------------T-HHHHH
T ss_pred CCHHHHHHHHHHHHHHHh-hCh-hhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHh-------------HHHHHhHHH
Confidence 578899999999998887 344 34456788899999999999999999998555311 135778889
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHccCcHHHHHhHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHhhcccchhhc
Q 001442 196 RTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMR 275 (1076)
Q Consensus 196 ~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~ 275 (1076)
.+|.++++.++......+-..|..+....+.- -+..++..+.. .+..++.+|+.++.|+..-... -.+....
T Consensus 99 DvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k~---tL~~lf~~i~~---~~~~de~~Re~~lkFl~~kl~~--l~~~~~~ 170 (556)
T PF05918_consen 99 DVLVQLLQTDDPVELDAVKNSLMSLLKQDPKG---TLTGLFSQIES---SKSGDEQVRERALKFLREKLKP--LKPELLT 170 (556)
T ss_dssp HHHHHHTT---HHHHHHHHHHHHHHHHH-HHH---HHHHHHHHHH------HS-HHHHHHHHHHHHHHGGG--S-TTTS-
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHhcCcHH---HHHHHHHHHHh---cccCchHHHHHHHHHHHHHHhh--CcHHHhh
Confidence 99999999888888888888898887766532 22333333332 2234678999999998754431 1111111
Q ss_pred cchhhHHHHHHHHHHhhcCCCCCccccCCCCCCcccCCCCchhhHHHHHHHHHHHcC--CCcchHHHHHHHHHhh-----
Q 001442 276 KLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALG--GNTIVPVASEQLPAYL----- 348 (1076)
Q Consensus 276 ~~~~~~~~l~~~l~~~l~~~~dd~~~~~~~~e~~d~~e~~~~~~a~~~l~~l~~~~~--~~~~~~~l~~~l~~~l----- 348 (1076)
.-...-.-++..+.+.|.++..+ .+.....+|..+-..-+ +..-...+++.+.+..
T Consensus 171 p~~E~e~~i~~~ikkvL~DVTae-----------------EF~l~m~lL~~lk~~~~~~t~~g~qeLv~ii~eQa~Ld~~ 233 (556)
T PF05918_consen 171 PQKEMEEFIVDEIKKVLQDVTAE-----------------EFELFMSLLKSLKIYGGKQTIEGRQELVDIIEEQADLDQP 233 (556)
T ss_dssp --HHHHHHHHHHHHHHCTT--HH-----------------HHHHHHHHHHTSGG---GSSHHHHHHHHHHHHHHHTTTS-
T ss_pred chHHHHHHHHHHHHHHHHhccHH-----------------HHHHHHHHHHhCccccccCChHHHHHHHHHHHHHhccCCC
Confidence 00111122444444444332110 12333333333322101 0111233445444322
Q ss_pred -cCCChhHHH----HHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhh
Q 001442 349 -AAPEWQKHH----AALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQV 423 (1076)
Q Consensus 349 -~~~~~~~r~----aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l 423 (1076)
...|...-. ....++-.+..+... .+.+..++..+++.+.+-....|-.-+.++..++.+.++.- ...+
T Consensus 234 f~~sD~e~Idrli~C~~~Alp~fs~~v~S--skfv~y~~~kvlP~l~~l~e~~kl~lLk~lAE~s~~~~~~d----~~~~ 307 (556)
T PF05918_consen 234 FDPSDPESIDRLISCLRQALPFFSRGVSS--SKFVNYMCEKVLPKLSDLPEDRKLDLLKLLAELSPFCGAQD----ARQL 307 (556)
T ss_dssp --SSSHHHHHHHHHHHHHHGGG-BTTB----HHHHHHHHHHTCCCTT-----HHHHHHHHHHHHHTT----T----HHHH
T ss_pred CCCcCHHHHHHHHHHHHHhhHHhcCCCCh--HHHHHHHHHHhcCChhhCChHHHHHHHHHHHHHcCCCCccc----HHHH
Confidence 122222111 112222223333322 24455566666777766555666667778888777765321 3445
Q ss_pred HHHHHhhccC
Q 001442 424 LPALAGAMDD 433 (1076)
Q Consensus 424 l~~l~~~l~~ 433 (1076)
+|.++..|..
T Consensus 308 L~~i~~~L~~ 317 (556)
T PF05918_consen 308 LPSIFQLLKK 317 (556)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHH
Confidence 5555554443
No 143
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=96.98 E-value=1.3 Score=52.50 Aligned_cols=339 Identities=15% Similarity=0.204 Sum_probs=167.6
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHccC--cHHHHHhHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHhhccc
Q 001442 193 LMMRTLTESLNNGNEATAQEALELLIELAGTE--PRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERA 270 (1076)
Q Consensus 193 ~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~--~~~~~~~l~~l~~~l~~~~~~~~~~~~~r~~al~~l~~l~~~~~~~ 270 (1076)
.++..|..+++.++.+....+..+|..+.-.. ...+. -..+++.+..++.. .+.+++..++.++..+...
T Consensus 290 ~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~--~~giV~kL~kLl~s--~~~~l~~~aLrlL~NLSfd---- 361 (708)
T PF05804_consen 290 GIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMA--ESGIVEKLLKLLPS--ENEDLVNVALRLLFNLSFD---- 361 (708)
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHH--HcCCHHHHHHHhcC--CCHHHHHHHHHHHHHhCcC----
Confidence 34455555667778888888888888876321 11121 12567777777754 3577899999999999763
Q ss_pred chhhccchhhH-HHHHHHHHHhhcCCCCCccccCCCCCCcccCCCCchhhHHHHHHHHHHHc------CCCcchHHHHHH
Q 001442 271 PGMMRKLPQFI-NRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIAL------GGNTIVPVASEQ 343 (1076)
Q Consensus 271 ~~~~~~~~~~~-~~l~~~l~~~l~~~~dd~~~~~~~~e~~d~~e~~~~~~a~~~l~~l~~~~------~~~~~~~~l~~~ 343 (1076)
+.... .++ ..++|.+...+.+. +.+..+..+|..++..- .....+|.++..
T Consensus 362 ~~~R~---~mV~~GlIPkLv~LL~d~-------------------~~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~ 419 (708)
T PF05804_consen 362 PELRS---QMVSLGLIPKLVELLKDP-------------------NFREVALKILYNLSMDDEARSMFAYTDCIPQLMQM 419 (708)
T ss_pred HHHHH---HHHHCCCcHHHHHHhCCC-------------------chHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHH
Confidence 22111 111 23556666655321 12334555555554321 112334444433
Q ss_pred HHHhhcCCChhHHHHHHHHHHHHHhhcH--HHHH--HhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhh
Q 001442 344 LPAYLAAPEWQKHHAALIALAQIAEGCA--KVMV--KNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQF 419 (1076)
Q Consensus 344 l~~~l~~~~~~~r~aal~~l~~l~~~~~--~~~~--~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 419 (1076)
+ +..++.......+..+-.++.... ..+. .-++.++.. .++..+|. .++.+..++.+-++ . ...
T Consensus 420 L---l~~~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~r---a~~~~D~l----LlKlIRNiS~h~~~-~-k~~ 487 (708)
T PF05804_consen 420 L---LENSEEEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKR---ALKTRDPL----LLKLIRNISQHDGP-L-KEL 487 (708)
T ss_pred H---HhCCCccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHH---HHhcccHH----HHHHHHHHHhcCch-H-HHH
Confidence 3 233333333333333333333211 1111 113333332 23333433 23466666665432 2 223
Q ss_pred hhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchH--HHHHHHHHHhhcC--chhHHHHHHHHHHHHHHH
Q 001442 420 HPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLD--GIVSKLLVLLQNG--KQMVQEGALTALASVADS 495 (1076)
Q Consensus 420 ~~~ll~~l~~~l~~~~~~~v~~~a~~aL~~l~~~~~~~~l~~~l~--~ll~~l~~~l~~~--~~~v~~~al~ai~~l~~~ 495 (1076)
+...+..+...+....+......+..+|.++.-. +.+ ...++. .++|.+...+..+ ..++.-.++..+|+++..
T Consensus 488 f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~-~ld-~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d 565 (708)
T PF05804_consen 488 FVDFIGDLAKIVSSGDSEEFVVECLGILANLTIP-DLD-WAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASD 565 (708)
T ss_pred HHHHHHHHHHHhhcCCcHHHHHHHHHHHHhcccC-CcC-HHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCC
Confidence 3345555555555534566666777777776422 111 112232 4677777777644 345667777888877642
Q ss_pred hHhhHHhhH--hhhHHHHHHHHhccCCchhhhhHHHHHHHHHHHHHH-hchhhhhhhHHHHHHHHHHHhcCCCCCCChhh
Q 001442 496 SQEHFQKYY--DAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMA-VGKDKFRDDAKQVMEVLMSLQGSQMETDDPTT 572 (1076)
Q Consensus 496 ~~~~~~~~~--~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~i~~~-~g~~~~~~~~~~ii~~l~~~~~~~~~~~~~~~ 572 (1076)
+...+.+ ..+++.|..++....+++...+ +.+-++..+... -..+.+... .++..+++.+.++ .+..+|
T Consensus 566 --~~~A~lL~~sgli~~Li~LL~~kqeDdE~Vl--Qil~~f~~ll~h~~tr~~ll~~-~~~~~ylidL~~d---~N~~ir 637 (708)
T PF05804_consen 566 --PECAPLLAKSGLIPTLIELLNAKQEDDEIVL--QILYVFYQLLFHEETREVLLKE-TEIPAYLIDLMHD---KNAEIR 637 (708)
T ss_pred --HHHHHHHHhCChHHHHHHHHHhhCchHHHHH--HHHHHHHHHHcChHHHHHHHhc-cchHHHHHHHhcC---CCHHHH
Confidence 2333333 4678888888876554433322 334444444321 011111111 2456667776553 234455
Q ss_pred HHHHHHHHHHH
Q 001442 573 SYMLQAWARLC 583 (1076)
Q Consensus 573 ~~~~~~~~~l~ 583 (1076)
..+-.++.-++
T Consensus 638 ~~~d~~Ldii~ 648 (708)
T PF05804_consen 638 KVCDNALDIIA 648 (708)
T ss_pred HHHHHHHHHHH
Confidence 55545554443
No 144
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.98 E-value=1 Score=51.18 Aligned_cols=403 Identities=15% Similarity=0.163 Sum_probs=200.8
Q ss_pred HHHHHHHHHhcC--CChHHHHHHHHHHHHhhhcC----------chHHHHHHHHHHccCCCHHHHHHHHHHHHHh--ccc
Q 001442 22 APFETLISHLMS--TSNEQRSEAELLFNLCKQQD----------PDSLTLKLAHLLQRSPHPEARAMAAVLLRKL--LTR 87 (1076)
Q Consensus 22 ~~l~~lL~~~~s--~d~~~r~~Ae~~L~~~~~~~----------p~~~~~~L~~il~~~~~~~~R~~a~v~Lk~~--i~~ 87 (1076)
..|.-.+..+-+ .+.+.+++..+.|..++.+. --.++.-|+.|.-.+.+-..-++-++-|-.. .+.
T Consensus 11 rGL~vFISDlRncq~keaE~kRInkELanIRskFk~~K~L~gYqkKKYV~KLlyI~llg~dIdFGhmEaV~LLss~kysE 90 (938)
T KOG1077|consen 11 RGLAVFISDLRNCQSKEAEEKRINKELANIRSKFKGDKTLDGYQKKKYVCKLLYIYLLGYDIDFGHMEAVNLLSSNKYSE 90 (938)
T ss_pred hhHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHHHHHHhcCccccchHHHHHHhhcCCccH
Confidence 344444444432 23445556666665544321 1235667777665555544555544433211 111
Q ss_pred CC-CCcccC-C---CHhHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhcccCCCCcchhHHHHHHhhcCCC--HHHH
Q 001442 88 DD-SFLWPR-L---SLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDS--VKLQ 160 (1076)
Q Consensus 88 ~~-~~~w~~-l---~~~~~~~lk~~Ll~~l~~~~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~~~~--~~~r 160 (1076)
+- +-..-. + +.+....+-+.+.+-|.+ .++.-...+-++|+.|...+....-.++ +-..+.+++ .-+|
T Consensus 91 KqIGYl~is~L~n~n~dl~klvin~iknDL~s-rn~~fv~LAL~~I~niG~re~~ea~~~D----I~KlLvS~~~~~~vk 165 (938)
T KOG1077|consen 91 KQIGYLFISLLLNENSDLMKLVINSIKNDLSS-RNPTFVCLALHCIANIGSREMAEAFADD----IPKLLVSGSSMDYVK 165 (938)
T ss_pred HHHhHHHHHHHHhcchHHHHHHHHHHHhhhhc-CCcHHHHHHHHHHHhhccHhHHHHhhhh----hHHHHhCCcchHHHH
Confidence 00 000000 0 122223333333333332 2333444566788877665443212222 223333333 4567
Q ss_pred HHHHHHHHHHHHHHHHhhCCcchHhHHhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccCcHHHHHhHHHHHHHHH
Q 001442 161 ESAFLIFAQLIINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSML 240 (1076)
Q Consensus 161 ~~al~~L~~l~~~~~~~l~~~~~~~~~~~l~p~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~l~ 240 (1076)
..|..+|-.++.. -. +...-.. +.+.+...+.+.+-.+...+...+..++...|+....-++.-+..+.
T Consensus 166 qkaALclL~L~r~----sp---Dl~~~~~----W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~avs~L~ 234 (938)
T KOG1077|consen 166 QKAALCLLRLFRK----SP---DLVNPGE----WAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLPLAVSRLS 234 (938)
T ss_pred HHHHHHHHHHHhc----Cc---cccChhh----HHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHHHHHHHHH
Confidence 6666666444322 11 1111122 33444445556666666677777778888887777666665555555
Q ss_pred HHhcCCCcc-----------hhHHHHHHHHHHHHHHhhcccchhhccchhhHHHHHHHHHHhhcCCCCCccccCCCCCCc
Q 001442 241 QIAEAESLE-----------EGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDE 309 (1076)
Q Consensus 241 ~~~~~~~~~-----------~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~dd~~~~~~~~e~~ 309 (1076)
.+......+ +-+....+..+..+-. | .-+.-..+++.++-..|....+-+. ..
T Consensus 235 riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~-----~----~D~~~r~~l~evl~~iLnk~~~~~~-~k------ 298 (938)
T KOG1077|consen 235 RIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPT-----P----EDPSTRARLNEVLERILNKAQEPPK-SK------ 298 (938)
T ss_pred HHHhhcccchhhceeecCCChHHHHHHHHHHHhCCC-----C----CCchHHHHHHHHHHHHHhccccCcc-cc------
Confidence 554332211 2233333333333200 0 0011112222222222221111110 00
Q ss_pred ccCCCCchh-hHHHHHHHHHHHcC-CCcchHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhc--HHHHHHhHHHHHHHH
Q 001442 310 DAGESSNYS-VGQECLDRLAIALG-GNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGC--AKVMVKNLEQVLSMV 385 (1076)
Q Consensus 310 d~~e~~~~~-~a~~~l~~l~~~~~-~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~--~~~~~~~l~~i~~~l 385 (1076)
+-...+... +-.+++. ++.++. .+.++......+.+++++...+.|+-|+..+..++..- .+.++.| ...|
T Consensus 299 ~vq~~na~naVLFeaI~-l~~h~D~e~~ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h----~d~I 373 (938)
T KOG1077|consen 299 KVQHSNAKNAVLFEAIS-LAIHLDSEPELLSRAVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKH----QDTI 373 (938)
T ss_pred chHhhhhHHHHHHHHHH-HHHHcCCcHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHH----HHHH
Confidence 000000111 1222232 233332 23556666677778888999999999998888887652 2334444 4556
Q ss_pred HhhCC-CCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchH
Q 001442 386 LNSFR-DPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLD 464 (1076)
Q Consensus 386 ~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~aL~~l~~~~~~~~l~~~l~ 464 (1076)
+..|+ +.+-.||+.|...|-.+|.. .....++..+++.|.. .++.+|+....-..-+.+....+ ...|.+
T Consensus 374 i~sLkterDvSirrravDLLY~mcD~-------~Nak~IV~elLqYL~t-Ad~sireeivlKvAILaEKyAtD-y~WyVd 444 (938)
T KOG1077|consen 374 INSLKTERDVSIRRRAVDLLYAMCDV-------SNAKQIVAELLQYLET-ADYSIREEIVLKVAILAEKYATD-YSWYVD 444 (938)
T ss_pred HHHhccccchHHHHHHHHHHHHHhch-------hhHHHHHHHHHHHHhh-cchHHHHHHHHHHHHHHHHhcCC-cchhHH
Confidence 66676 78889999999999998863 3455677777888777 67888888777777777776655 456665
Q ss_pred HHHHHH
Q 001442 465 GIVSKL 470 (1076)
Q Consensus 465 ~ll~~l 470 (1076)
.++..+
T Consensus 445 viLqLi 450 (938)
T KOG1077|consen 445 VILQLI 450 (938)
T ss_pred HHHHHH
Confidence 555433
No 145
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=96.96 E-value=0.4 Score=62.67 Aligned_cols=293 Identities=14% Similarity=0.174 Sum_probs=180.6
Q ss_pred cchhhHHHHHHHHHHHHHhcccCCCC-----c-chhHHHHHHhh-cCCCHHHHHHHHHHHHHHHHHHHHhhCCcchHhHH
Q 001442 115 ESAKSISKKLCDTVSELASNILPENG-----W-PELLPFMFQCV-SSDSVKLQESAFLIFAQLIINFIQCLTSSADRDRF 187 (1076)
Q Consensus 115 ~~~~~vr~~~~~~i~~ia~~~~~~~~-----w-~~ll~~l~~~~-~~~~~~~r~~al~~L~~l~~~~~~~l~~~~~~~~~ 187 (1076)
.++..++..+.+.+..++.......+ . .+++..+...+ .+.+..+|+..+.++..++......+
T Consensus 1148 ~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~nI--------- 1218 (1780)
T PLN03076 1148 SENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNV--------- 1218 (1780)
T ss_pred CcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhh---------
Confidence 34556777777777777765544322 1 35665555544 45567999999999988866554444
Q ss_pred hhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccCcHHHH----HhHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHH
Q 001442 188 QDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLR----RQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITL 263 (1076)
Q Consensus 188 ~~l~p~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~----~~l~~l~~~l~~~~~~~~~~~~~r~~al~~l~~l 263 (1076)
+.=++.++.++.....+.++.....+++.+..+++.+-..+. ..+..++..+.....+. .+.++...|++++..+
T Consensus 1219 kSGWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~DlV~cL~~Fa~q~-~~~nISL~AI~lL~~~ 1297 (1780)
T PLN03076 1219 KSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFTDCVNCLIAFTNSR-FNKDISLNAIAFLRFC 1297 (1780)
T ss_pred hcCcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHhCc-CcccccHHHHHHHHHH
Confidence 345667788887777778888999999999888765433222 46778888887777543 4567788888887766
Q ss_pred HHhhcccchh---------------------------hccchhhHHHHHHHHHHhhcCCCCCccccCCCCCCcccCCCCc
Q 001442 264 AEARERAPGM---------------------------MRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSN 316 (1076)
Q Consensus 264 ~~~~~~~~~~---------------------------~~~~~~~~~~l~~~l~~~l~~~~dd~~~~~~~~e~~d~~e~~~ 316 (1076)
+..-...+.. ......+..-.+|.+...-. ..-| +...+
T Consensus 1298 ~~~La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~-l~~D-------------~RlEV 1363 (1780)
T PLN03076 1298 ATKLAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSE-LSFD-------------PRPEI 1363 (1780)
T ss_pred HHHHHhccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHH-HhcC-------------CcHHH
Confidence 4321000000 00000111223343333211 1101 02236
Q ss_pred hhhHHHHHHHHHHHcCCCcch--------H-HHHHHHHHhh---c--------------C------CChhHHHHHHHHHH
Q 001442 317 YSVGQECLDRLAIALGGNTIV--------P-VASEQLPAYL---A--------------A------PEWQKHHAALIALA 364 (1076)
Q Consensus 317 ~~~a~~~l~~l~~~~~~~~~~--------~-~l~~~l~~~l---~--------------~------~~~~~r~aal~~l~ 364 (1076)
|..|.+.|-++....|. .+- . .++|.+...- . + ..|. .+.+..+|.
T Consensus 1364 R~~ALqtLF~iL~~yG~-~Fs~~~W~~if~~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl-~eT~~~AL~ 1441 (1780)
T PLN03076 1364 RKSALQVLFDTLRNHGH-LFSLPLWERVFESVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWL-YETCTLALQ 1441 (1780)
T ss_pred HHHHHHHHHHHHHHhhc-cCCHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhhhhHH-HHHHHHHHH
Confidence 76677666555555552 221 1 3444443211 0 0 1143 667777777
Q ss_pred HHHhhcHH---HHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccC
Q 001442 365 QIAEGCAK---VMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDD 433 (1076)
Q Consensus 365 ~l~~~~~~---~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~ 433 (1076)
.+++-... .+...++.++..+..+...+|..+-..+..|+.++....+..+.++.+..++..+.+.+..
T Consensus 1442 ~lvdLft~fFd~L~~~L~~~l~ll~~ci~q~n~~la~ig~~~l~~li~~ng~~F~~~~W~~i~~~~~~lf~~ 1513 (1780)
T PLN03076 1442 LVVDLFVKFYPTVNPLLKKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGHLFSDEKWLEVVLSLKEAANA 1513 (1780)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHH
Confidence 77765543 3445677788888888888999999999999999999988888778888888888777765
No 146
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=96.93 E-value=0.0077 Score=65.35 Aligned_cols=153 Identities=18% Similarity=0.183 Sum_probs=114.2
Q ss_pred HHHHhhcCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhh-CCCCChhHHHHHHHHHHHhhhhhchhHHhhhhh
Q 001442 343 QLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNS-FRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHP 421 (1076)
Q Consensus 343 ~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~-l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ 421 (1076)
++.+++.+.+.-.|+++.++++.---|.+. ..++..++.. .+|.|..||++|..++|-+|-.- .
T Consensus 520 ~I~ell~d~ds~lRy~G~fs~alAy~GTgn------~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D---------~ 584 (926)
T COG5116 520 YINELLYDKDSILRYNGVFSLALAYVGTGN------LGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDD---------R 584 (926)
T ss_pred HHHHHhcCchHHhhhccHHHHHHHHhcCCc------chhHhhhheeecccCchHHHHHHHHheeeeEecC---------c
Confidence 455666777888888888777654333221 1234444444 68999999999999999876321 2
Q ss_pred hhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHhHhhHH
Q 001442 422 QVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQ 501 (1076)
Q Consensus 422 ~ll~~l~~~l~~~~~~~v~~~a~~aL~~l~~~~~~~~l~~~l~~ll~~l~~~l~~~~~~v~~~al~ai~~l~~~~~~~~~ 501 (1076)
..++..++.|.+..++.||.....+|+-.|...+.. ..+..|-.++.+++..||..|+.+++.+..-+.+++.
T Consensus 585 ~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~-------~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Ln 657 (926)
T COG5116 585 DLLVGTVELLSESHNFHVRAGVAVALGIACAGTGDK-------VATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELN 657 (926)
T ss_pred chhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccH-------HHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccC
Confidence 456666777777578999999999999999887743 2355566677888999999999999999988888888
Q ss_pred hhHhhhHHHHHHHHhc
Q 001442 502 KYYDAVMPFLKAILVN 517 (1076)
Q Consensus 502 ~~~~~i~~~L~~~l~~ 517 (1076)
|-+..|...+.+.+.+
T Consensus 658 p~v~~I~k~f~~vI~~ 673 (926)
T COG5116 658 PNVKRIIKKFNRVIVD 673 (926)
T ss_pred hhHHHHHHHHHHHHhh
Confidence 8888888888887765
No 147
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.92 E-value=0.055 Score=56.61 Aligned_cols=146 Identities=18% Similarity=0.165 Sum_probs=103.5
Q ss_pred CCChhHHHHHHHHHHHHHhhcHHHHH-HhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhh-hhhHHHH
Q 001442 350 APEWQKHHAALIALAQIAEGCAKVMV-KNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFH-PQVLPAL 427 (1076)
Q Consensus 350 ~~~~~~r~aal~~l~~l~~~~~~~~~-~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~-~~ll~~l 427 (1076)
+.+...|+.|+.-|..+++....... -.+.. +..++..++++++.+|..|++.+|..+..-+. .+...+ ...++.|
T Consensus 94 s~~le~ke~ald~Le~lve~iDnAndl~~~gg-l~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~-~Qe~v~E~~~L~~L 171 (342)
T KOG2160|consen 94 SVDLEDKEDALDNLEELVEDIDNANDLISLGG-LVPLLGYLENSDAELRELAARVIGTAVQNNPK-SQEQVIELGALSKL 171 (342)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhhHHhHhhccC-HHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHH-HHHHHHHcccHHHH
Confidence 45788999999999999887654222 11222 34444499999999999999999999876543 222222 2477778
Q ss_pred HhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchH-HHHHHHHHHhhc--CchhHHHHHHHHHHHHHHHhHh
Q 001442 428 AGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLD-GIVSKLLVLLQN--GKQMVQEGALTALASVADSSQE 498 (1076)
Q Consensus 428 ~~~l~~~~~~~v~~~a~~aL~~l~~~~~~~~l~~~l~-~ll~~l~~~l~~--~~~~v~~~al~ai~~l~~~~~~ 498 (1076)
+..+...++..+|..|..|+..++.+..+.. ..++. .=...|..++++ .+...+..++..++.+......
T Consensus 172 l~~ls~~~~~~~r~kaL~AissLIRn~~~g~-~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s 244 (342)
T KOG2160|consen 172 LKILSSDDPNTVRTKALFAISSLIRNNKPGQ-DEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKS 244 (342)
T ss_pred HHHHccCCCchHHHHHHHHHHHHHhcCcHHH-HHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhh
Confidence 8777754667889999999999999876431 21211 115677888888 5677888899999998876544
No 148
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=96.92 E-value=0.32 Score=50.45 Aligned_cols=243 Identities=14% Similarity=0.213 Sum_probs=137.6
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHHHHHHHh-hCCcchHhHHhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccCc
Q 001442 147 FMFQCVSSDSVKLQESAFLIFAQLIINFIQC-LTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEP 225 (1076)
Q Consensus 147 ~l~~~~~~~~~~~r~~al~~L~~l~~~~~~~-l~~~~~~~~~~~l~p~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~ 225 (1076)
.|-..+.++++..|..|+.+|+.++..+-.. +. .+-+..+++.+...+. |......++..+..++.. .
T Consensus 3 ~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~--------~~ev~~L~~F~~~rl~--D~~~~~~~l~gl~~L~~~-~ 71 (262)
T PF14500_consen 3 SLGEYLTSEDPIIRAKALELLSEVLERLPPDFLS--------RQEVQVLLDFFCSRLD--DHACVQPALKGLLALVKM-K 71 (262)
T ss_pred chhhhhCCCCHHHHHHHHHHHHHHHHhCCHhhcc--------HHHHHHHHHHHHHHhc--cHhhHHHHHHHHHHHHhC-c
Confidence 3456778899999999999998775443211 11 1224455666665553 566666778888888743 3
Q ss_pred HHHHHhHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHhhcccchhhccchhhHHHHHHHHHHhhcCCCCCccccCCC
Q 001442 226 RFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAE 305 (1076)
Q Consensus 226 ~~~~~~l~~l~~~l~~~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~dd~~~~~~~ 305 (1076)
.+-......+++.+.+-...+......|..+++++..+.+.. ....+ .+-...+..+++.+ +.+.|
T Consensus 72 ~~~~~~~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~---~~~l~---~~~~~fv~~~i~~~-~gEkD------- 137 (262)
T PF14500_consen 72 NFSPESAVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENH---REALQ---SMGDDFVYGFIQLI-DGEKD------- 137 (262)
T ss_pred CCChhhHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHh---HHHHH---hchhHHHHHHHHHh-ccCCC-------
Confidence 333344556666666544444456678999999999998841 11111 11122333333322 12222
Q ss_pred CCCcccCCCCch--hhHHHHHHHHHHHcCCCcchHHHHHHHHHhh----c-CC-Ch--hHHHHHHHHHHHHHhhcHHHHH
Q 001442 306 TEDEDAGESSNY--SVGQECLDRLAIALGGNTIVPVASEQLPAYL----A-AP-EW--QKHHAALIALAQIAEGCAKVMV 375 (1076)
Q Consensus 306 ~e~~d~~e~~~~--~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l----~-~~-~~--~~r~aal~~l~~l~~~~~~~~~ 375 (1076)
++ ..+.+.+..+...+.-....+.++..+.-++ + .+ ++ -.|+.--.+|.......+
T Consensus 138 ----------PRnLl~~F~l~~~i~~~~~~~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~---- 203 (262)
T PF14500_consen 138 ----------PRNLLLSFKLLKVILQEFDISEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTP---- 203 (262)
T ss_pred ----------HHHHHHHHHHHHHHHHhcccchhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcH----
Confidence 33 2355556666655543333333333332221 1 11 22 122222222222211111
Q ss_pred HhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHH
Q 001442 376 KNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALA 428 (1076)
Q Consensus 376 ~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~ 428 (1076)
.+-+..+|.++..|.++.+.++..++.+|...+...++....+|+..+...+-
T Consensus 204 ~fa~~~~p~LleKL~s~~~~~K~D~L~tL~~c~~~y~~~~~~~~~~~iw~~lk 256 (262)
T PF14500_consen 204 LFAPFAFPLLLEKLDSTSPSVKLDSLQTLKACIENYGADSLSPHWSTIWNALK 256 (262)
T ss_pred hhHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
Confidence 22346789999999999999999999999999988877654677777766653
No 149
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.86 E-value=0.017 Score=64.98 Aligned_cols=156 Identities=21% Similarity=0.226 Sum_probs=111.8
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhh
Q 001442 341 SEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFH 420 (1076)
Q Consensus 341 ~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~ 420 (1076)
-+++.+++.+.|+-.|.+++++++.---|.+. ..-+.++++. ..+|.|..||++|..+||-++-.-
T Consensus 521 d~lI~el~~dkdpilR~~Gm~t~alAy~GTgn--nkair~lLh~---aVsD~nDDVrRaAVialGFVl~~d--------- 586 (929)
T KOG2062|consen 521 DPLIKELLRDKDPILRYGGMYTLALAYVGTGN--NKAIRRLLHV---AVSDVNDDVRRAAVIALGFVLFRD--------- 586 (929)
T ss_pred HHHHHHHhcCCchhhhhhhHHHHHHHHhccCc--hhhHHHhhcc---cccccchHHHHHHHHHheeeEecC---------
Confidence 35566777888999999998877643332221 1122222222 368999999999999999876321
Q ss_pred hhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHhHhhH
Q 001442 421 PQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHF 500 (1076)
Q Consensus 421 ~~ll~~l~~~l~~~~~~~v~~~a~~aL~~l~~~~~~~~l~~~l~~ll~~l~~~l~~~~~~v~~~al~ai~~l~~~~~~~~ 500 (1076)
+..+|..++.|.++-++.||..+.-||+-.|...+.. ..+..|-.+..++...||..|+.+++.+.--..+..
T Consensus 587 p~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~-------eAi~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~ 659 (929)
T KOG2062|consen 587 PEQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLK-------EAINLLEPLTSDPVDFVRQGALIALAMIMIQQTEQL 659 (929)
T ss_pred hhhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcH-------HHHHHHhhhhcChHHHHHHHHHHHHHHHHHhccccc
Confidence 2345666667776568999999999999999887632 344555566678888999999999999887777777
Q ss_pred HhhHhhhHHHHHHHHhc
Q 001442 501 QKYYDAVMPFLKAILVN 517 (1076)
Q Consensus 501 ~~~~~~i~~~L~~~l~~ 517 (1076)
.|-+..+-..+.+.+.+
T Consensus 660 ~pkv~~frk~l~kvI~d 676 (929)
T KOG2062|consen 660 CPKVNGFRKQLEKVIND 676 (929)
T ss_pred CchHHHHHHHHHHHhhh
Confidence 77777777777777765
No 150
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=96.86 E-value=0.027 Score=57.85 Aligned_cols=193 Identities=16% Similarity=0.206 Sum_probs=116.1
Q ss_pred HHHHHhhCC-CCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCc-ccc
Q 001442 382 LSMVLNSFR-DPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTP-EIL 459 (1076)
Q Consensus 382 ~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~aL~~l~~~~~~-~~l 459 (1076)
++.++..|+ ..+|.++..+..+++..+.+-...- .-.--..++.+...+.+ +++.+|..|+.+|.++....+. ..+
T Consensus 14 l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~-~Ir~~Ggi~lI~~lL~~-p~~~vr~~AL~aL~Nls~~~en~~~I 91 (254)
T PF04826_consen 14 LQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQD-IIRDLGGISLIGSLLND-PNPSVREKALNALNNLSVNDENQEQI 91 (254)
T ss_pred HHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHH-HHHHcCCHHHHHHHcCC-CChHHHHHHHHHHHhcCCChhhHHHH
Confidence 344555555 5689999999999999765421110 01223678888999999 9999999999999999765432 223
Q ss_pred cCchHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHhHhhHHhhHhhhHHHHHHHHhccCCchhhhhHHHHHHHHHHHHH
Q 001442 460 TPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGM 539 (1076)
Q Consensus 460 ~~~l~~ll~~l~~~l~~~~~~v~~~al~ai~~l~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~i~~ 539 (1076)
..|++.++..+.. ..-+..++..++.++..+.-. ......+...+|.+..++... +...|..++.++..++.
T Consensus 92 k~~i~~Vc~~~~s--~~lns~~Q~agLrlL~nLtv~--~~~~~~l~~~i~~ll~LL~~G----~~~~k~~vLk~L~nLS~ 163 (254)
T PF04826_consen 92 KMYIPQVCEETVS--SPLNSEVQLAGLRLLTNLTVT--NDYHHMLANYIPDLLSLLSSG----SEKTKVQVLKVLVNLSE 163 (254)
T ss_pred HHHHHHHHHHHhc--CCCCCHHHHHHHHHHHccCCC--cchhhhHHhhHHHHHHHHHcC----ChHHHHHHHHHHHHhcc
Confidence 4455555544433 123567888888888888532 222233344566666666542 23467778888877764
Q ss_pred H--hchhhhhhhHHHHHHHHHHHhcCCCCCCChhhHHHHHHHHHHHHHhccC
Q 001442 540 A--VGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQD 589 (1076)
Q Consensus 540 ~--~g~~~~~~~~~~ii~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 589 (1076)
. ..++-+. .+....++.+.+.. .+......++..|.++...++++
T Consensus 164 np~~~~~Ll~---~q~~~~~~~Lf~~~--~~~~~l~~~l~~~~ni~~~~~~~ 210 (254)
T PF04826_consen 164 NPDMTRELLS---AQVLSSFLSLFNSS--ESKENLLRVLTFFENINENIKKE 210 (254)
T ss_pred CHHHHHHHHh---ccchhHHHHHHccC--CccHHHHHHHHHHHHHHHhhCcc
Confidence 2 1112111 13444455554432 23344556677777777666544
No 151
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=96.83 E-value=0.046 Score=52.37 Aligned_cols=136 Identities=21% Similarity=0.277 Sum_probs=103.4
Q ss_pred cchHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhc-HHHHHHhHHHHHHHHHhhCCCC-ChhHHHHHHHHHHHhhhhhc
Q 001442 335 TIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGC-AKVMVKNLEQVLSMVLNSFRDP-HPRVRWAAINAIGQLSTDLG 412 (1076)
Q Consensus 335 ~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~-~~~~~~~l~~i~~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~~ 412 (1076)
..+..+...+...++++++..|..|+..++.+++.+ .+.+..+-...+..+++.++.+ .+.++..++.+++.+.....
T Consensus 21 ~~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~ 100 (165)
T PF08167_consen 21 SALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIR 100 (165)
T ss_pred HHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Confidence 455667777888899999999999999999999998 5666677777777777777654 45789999999999987664
Q ss_pred h------hHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHh
Q 001442 413 P------DLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLL 474 (1076)
Q Consensus 413 ~------~~~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~aL~~l~~~~~~~~l~~~l~~ll~~l~~~l 474 (1076)
+ ++..+.++.+++.+++.+++ ..+...++.+|..++...+. .+.||...+-..+...+
T Consensus 101 ~~p~l~Rei~tp~l~~~i~~ll~l~~~---~~~~~~~l~~L~~ll~~~pt-t~rp~~~ki~~~l~~ll 164 (165)
T PF08167_consen 101 GKPTLTREIATPNLPKFIQSLLQLLQD---SSCPETALDALATLLPHHPT-TFRPFANKIESALLSLL 164 (165)
T ss_pred CCCchHHHHhhccHHHHHHHHHHHHhc---cccHHHHHHHHHHHHHHCCc-cccchHHHHHHHHHHHh
Confidence 2 22235677777777777765 45667889999999988764 47888887766666554
No 152
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.81 E-value=1.4 Score=50.48 Aligned_cols=96 Identities=8% Similarity=0.120 Sum_probs=68.1
Q ss_pred CChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhh
Q 001442 351 PEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGA 430 (1076)
Q Consensus 351 ~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~ 430 (1076)
++-+.|..-+.++...+-..++ .-.++++.++..+.|.|+.--...+..+....+.++ .....++..++..
T Consensus 371 ~~~~yRqlLiktih~cav~Fp~----~aatvV~~ll~fisD~N~~aas~vl~FvrE~iek~p-----~Lr~~ii~~l~~~ 441 (948)
T KOG1058|consen 371 DNGKYRQLLIKTIHACAVKFPE----VAATVVSLLLDFISDSNEAAASDVLMFVREAIEKFP-----NLRASIIEKLLET 441 (948)
T ss_pred cchHHHHHHHHHHHHHhhcChH----HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCc-----hHHHHHHHHHHHh
Confidence 3467788888999888877664 445788999999999998766666666666555442 2334556666665
Q ss_pred ccCCCChhHHHHHHHHHHHhhhcCC
Q 001442 431 MDDFQNPRVQAHAASAVLNFSENCT 455 (1076)
Q Consensus 431 l~~~~~~~v~~~a~~aL~~l~~~~~ 455 (1076)
+..-....+...|.|.++.+|+...
T Consensus 442 ~~~irS~ki~rgalwi~GeYce~~~ 466 (948)
T KOG1058|consen 442 FPQIRSSKICRGALWILGEYCEGLS 466 (948)
T ss_pred hhhhcccccchhHHHHHHHHHhhhH
Confidence 5543456778899999999987754
No 153
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=96.79 E-value=0.0069 Score=56.83 Aligned_cols=137 Identities=15% Similarity=0.162 Sum_probs=98.6
Q ss_pred chHHHHHHHHHHHHhhcCCC------------CCChhhhhHHHHHHHHHHHHHhhcCCCCCHhhHHHHHHhhCCCCCcHH
Q 001442 920 VKPLVGEALSRLNVVIRHPN------------ALQPENLMAYDNAVSALGKICQFHRDSIDAAQVVPAWLNCLPIKGDLI 987 (1076)
Q Consensus 920 ~~~~~~~il~~L~~~l~~~~------------~~~~~~~~~~~na~~al~~i~~~~~~~~~~~~~l~~~l~~lp~~~d~~ 987 (1076)
+.|+++.++|.+++-+.... +..||..++|..|.+|+..++..+...+++..++..+...|.. +.+
T Consensus 3 i~~~L~~llP~ly~et~v~~elir~V~mGPFKh~vDDGLelRK~ayE~lytlLd~~~~~~~~~~~~~~v~~GL~D--~~D 80 (169)
T PF08623_consen 3 IRPHLDQLLPNLYAETKVKPELIREVDMGPFKHKVDDGLELRKAAYECLYTLLDTCLSRIDISEFLDRVEAGLKD--EHD 80 (169)
T ss_dssp TTTTHHHHHHHHHHTTS--STTEEEEEETTCEEEEEGGGHHHHHHHHHHHHHHHSTCSSS-HHHHHHHHHHTTSS---HH
T ss_pred hHHHHHHHHHHHHHHhccCHHHheeeecCCceeeecCcHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhcCC--cHH
Confidence 56788999999998765321 2347889999999999999999999999999999999999954 455
Q ss_pred HHHHHHHHHHHHHhhcCCcccCcCcCchhhHHHHHHHHhcCC---CCC------CHHHHHHHHHHHHHHHhhCChh----
Q 001442 988 EAKIVHEQLCSMVERSDSDLLGPNHQYLPKIVSVFAEILCGK---DLA------TEQTLSRIVNLLKQLQQTLPPA---- 1054 (1076)
Q Consensus 988 e~~~~~~~l~~li~~~~~~~~~~~~~~l~~i~~~~~~~l~~~---~~~------~~~~~~~~~~~l~~l~~~~~~~---- 1054 (1076)
-..-++..+.+|+...+..+.. +++.+++.+...+..+ +.. ..|....+...+..+...+|+.
T Consensus 81 Ik~L~~~~l~kl~~~~p~~v~~----~Ld~l~~~l~~~L~~k~k~~AvkQE~Ek~~E~~rs~lr~~~~l~~~i~~~~~~~ 156 (169)
T PF08623_consen 81 IKMLCHLMLSKLAQLAPEEVLQ----RLDSLVEPLRKTLSKKLKENAVKQEIEKQQELIRSVLRAVKALNSKIPGAESSP 156 (169)
T ss_dssp HHHHHHHHHHHHHHS-HHHHHH----CCTTTHHHHHHHHH----TTS-HHHHHHHHHHHHHHHHHHHHH-HSSTS-SSSH
T ss_pred HHHHHHHHHHHHHHhCHHHHHH----HHHHHHHHHHHHhhccCCCCcccccHHHHHHHHHHHHHHHHHHHHhCcccccCH
Confidence 6778999999999766555555 6899999998888622 111 2356677777777786777632
Q ss_pred -hHHHHHhc
Q 001442 1055 -TLASTWSS 1062 (1076)
Q Consensus 1055 -~~~~~~~~ 1062 (1076)
.|..+|..
T Consensus 157 ~~~~~f~~~ 165 (169)
T PF08623_consen 157 NKWNEFVEW 165 (169)
T ss_dssp -HHHHHHHH
T ss_pred HHHHHHHHH
Confidence 46666653
No 154
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.77 E-value=1.9 Score=51.22 Aligned_cols=89 Identities=12% Similarity=0.098 Sum_probs=67.0
Q ss_pred hHhhhhcCCCCHHHHHHHHHHHHHHHHHh---hhhhHhhHHhHHHHHHhhccCCChhHHhhhhHHHHHHHhhcCCCch-H
Q 001442 847 YLTPMWGKDKTAEERRIAICIFDDVAEQC---REAALKYYETYLPFLLEACNDENQDVRQAAVYGLGVCAEFGGSVVK-P 922 (1076)
Q Consensus 847 ~l~~~l~~~~~~~~r~~al~~l~~l~~~~---~~~~~~~~~~ll~~l~~~l~~~~~~vr~~a~~~lg~l~~~~~~~~~-~ 922 (1076)
....++ .+.+-..|..++.++......+ ...+.|.+++..|.++.++.+.+|-+-..|+.|+-.++.++|+-+. -
T Consensus 807 r~~~~L-S~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~~~k~~L~v~~a~~~i~~m~~~sgDFv~sR 885 (1014)
T KOG4524|consen 807 RGIHLL-SHESLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECLLCKDPLIVQRAFSCIEQMGKYSGDFVASR 885 (1014)
T ss_pred HHHHHh-cchhHHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHHhcCchHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 333344 4556667777888877755443 4567889999999999999999999999999999999999997543 3
Q ss_pred HHHHHHHHHHHhhc
Q 001442 923 LVGEALSRLNVVIR 936 (1076)
Q Consensus 923 ~~~~il~~L~~~l~ 936 (1076)
+...++|.+...+.
T Consensus 886 ~l~dvlP~l~~~~~ 899 (1014)
T KOG4524|consen 886 FLEDVLPWLKHLCQ 899 (1014)
T ss_pred HHHHHHHHHHHHHH
Confidence 45666776665554
No 155
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.75 E-value=0.11 Score=61.16 Aligned_cols=146 Identities=20% Similarity=0.237 Sum_probs=102.6
Q ss_pred ChhHHHHHHHHHHHHHhhcHHHHHHhH-HHHHHHHHhhCCC-CChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHh
Q 001442 352 EWQKHHAALIALAQIAEGCAKVMVKNL-EQVLSMVLNSFRD-PHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAG 429 (1076)
Q Consensus 352 ~~~~r~aal~~l~~l~~~~~~~~~~~l-~~i~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~ 429 (1076)
+.+.|..|.+.|+.++.+.+-.-+..+ ..++...+..++| ++|..|+=+|.|||++-+.+...--.-.-...-..+..
T Consensus 570 ~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~ 649 (1387)
T KOG1517|consen 570 PPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLIL 649 (1387)
T ss_pred CHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHH
Confidence 468899999999999998664333333 2567777788888 48999999999999998766431101122344556778
Q ss_pred hccCCCChhHHHHHHHHHHHhhhcCCcc----------ccc-----CchHHHHH----HHHHHhhcCchhHHHHHHHHHH
Q 001442 430 AMDDFQNPRVQAHAASAVLNFSENCTPE----------ILT-----PYLDGIVS----KLLVLLQNGKQMVQEGALTALA 490 (1076)
Q Consensus 430 ~l~~~~~~~v~~~a~~aL~~l~~~~~~~----------~l~-----~~l~~ll~----~l~~~l~~~~~~v~~~al~ai~ 490 (1076)
.|.| +.++||.+|..||+.|+.+...+ .+. .-.+.++. .++..+++..+.+|.....+++
T Consensus 650 ~LsD-~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~ls 728 (1387)
T KOG1517|consen 650 LLSD-PVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVVALS 728 (1387)
T ss_pred HhcC-ccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHHHHH
Confidence 8889 99999999999999999874211 011 11233333 5667778888999998888888
Q ss_pred HHHHHhHh
Q 001442 491 SVADSSQE 498 (1076)
Q Consensus 491 ~l~~~~~~ 498 (1076)
.++.....
T Consensus 729 ~~~~g~~~ 736 (1387)
T KOG1517|consen 729 HFVVGYVS 736 (1387)
T ss_pred HHHHhhHH
Confidence 77654443
No 156
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=96.75 E-value=0.019 Score=50.09 Aligned_cols=98 Identities=17% Similarity=0.287 Sum_probs=78.1
Q ss_pred ccCchHHHHHHHHHHhhc----CchhHHHHHHHHHHHHHHHhHhhHHhhHhhhHHHHHHHHhccCCchhhhhHHHHHHHH
Q 001442 459 LTPYLDGIVSKLLVLLQN----GKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECI 534 (1076)
Q Consensus 459 l~~~l~~ll~~l~~~l~~----~~~~v~~~al~ai~~l~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l 534 (1076)
+.+++=.++..+-..+.+ .+...|..++.+|+.+....++.+..+.++++-.|...+.. ..+|..+++|+
T Consensus 5 L~~~~Lgil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~------~~l~~~al~~W 78 (107)
T PF08064_consen 5 LQPHILGILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEI------PELREEALSCW 78 (107)
T ss_pred HHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCC------hhhHHHHHHHH
Confidence 445555667777766666 45678999999999999988888888888888877777643 25889999999
Q ss_pred HHHHHHhchhhhhhhHHHHHHHHHHHhc
Q 001442 535 SLVGMAVGKDKFRDDAKQVMEVLMSLQG 562 (1076)
Q Consensus 535 ~~i~~~~g~~~~~~~~~~ii~~l~~~~~ 562 (1076)
..+.+.++.+.+.|.+++++-.+++.++
T Consensus 79 ~~fi~~L~~~~l~~ll~~~~~~l~~~~~ 106 (107)
T PF08064_consen 79 NCFIKTLDEEDLGPLLDQIFAILLPLWD 106 (107)
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHHHhcc
Confidence 9999999988899999998888877543
No 157
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=96.74 E-value=0.34 Score=49.43 Aligned_cols=219 Identities=17% Similarity=0.243 Sum_probs=132.2
Q ss_pred hHHHHHHHHHHHcCCCcchHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhcHH-HHHHh----HHHHHHHHHhhCCCCC
Q 001442 319 VGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAK-VMVKN----LEQVLSMVLNSFRDPH 393 (1076)
Q Consensus 319 ~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~-~~~~~----l~~i~~~l~~~l~d~~ 393 (1076)
.+..||.++.+..-+-.+.|.++|.++..+..++..++.-++..++.+.+.|.. ..... -..+++.++.++..++
T Consensus 62 lcVscLERLfkakegahlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIgged 141 (524)
T KOG4413|consen 62 LCVSCLERLFKAKEGAHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGED 141 (524)
T ss_pred hHHHHHHHHHhhccchhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCc
Confidence 367789998887655788999999999999988999999999999999999862 22211 2357888888999999
Q ss_pred hhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHH-HhhccCCCChhHHHHHHHHHHHhhhcCCcccccCc--hHHHHHHH
Q 001442 394 PRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPAL-AGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPY--LDGIVSKL 470 (1076)
Q Consensus 394 ~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l-~~~l~~~~~~~v~~~a~~aL~~l~~~~~~~~l~~~--l~~ll~~l 470 (1076)
..|..+|...+.+++.. +..+..-+-..++..+ +..|.-..+.-+|.+....+..+....+ +. ..| -..++..|
T Consensus 142 deVAkAAiesikrialf-paaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSp-es-aneckkSGLldlL 218 (524)
T KOG4413|consen 142 DEVAKAAIESIKRIALF-PAALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISP-ES-ANECKKSGLLDLL 218 (524)
T ss_pred HHHHHHHHHHHHHHHhc-HHHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCH-HH-HhHhhhhhHHHHH
Confidence 99999999999998753 2222101111111111 0111110123344444444444443322 11 122 23556666
Q ss_pred HHHhhc-CchhHHHHHHHHHHHHHHHh-HhhHHhhHhhhHHHHHHHHhccCCchhhhhHHHHHHHHHHHHHHhchhhh
Q 001442 471 LVLLQN-GKQMVQEGALTALASVADSS-QEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKF 546 (1076)
Q Consensus 471 ~~~l~~-~~~~v~~~al~ai~~l~~~~-~~~~~~~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~g~~~~ 546 (1076)
..-++. .+.-|+...+.....++..- |.+|.+- ..++..+.+++....+.....+ ..+-..++.+|++..
T Consensus 219 eaElkGteDtLVianciElvteLaeteHgreflaQ-eglIdlicnIIsGadsdPfekf-----ralmgfgkffgkeai 290 (524)
T KOG4413|consen 219 EAELKGTEDTLVIANCIELVTELAETEHGREFLAQ-EGLIDLICNIISGADSDPFEKF-----RALMGFGKFFGKEAI 290 (524)
T ss_pred HHHhcCCcceeehhhHHHHHHHHHHHhhhhhhcch-hhHHHHHHHHhhCCCCCcHHHH-----HHHHHHHHHhcchHH
Confidence 666655 56678888888888877643 3333221 3467777777766444333333 244455555665543
No 158
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=96.72 E-value=0.075 Score=57.01 Aligned_cols=149 Identities=20% Similarity=0.279 Sum_probs=102.0
Q ss_pred HHHHHH-HHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCc
Q 001442 378 LEQVLS-MVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTP 456 (1076)
Q Consensus 378 l~~i~~-~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~aL~~l~~~~~~ 456 (1076)
+..++. .|.+++.++++.||..|..|+|-++-.-. +...+.++.+...+.. .+..|+..|+.++..++-..+.
T Consensus 24 l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~-----~~a~~~l~l~~~~~~~-~~~~v~~~al~~l~Dll~~~g~ 97 (298)
T PF12719_consen 24 LESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDK-----ELAKEHLPLFLQALQK-DDEEVKITALKALFDLLLTHGI 97 (298)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCh-----HHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHcCc
Confidence 446665 45589999999999999999999985432 3444556666666655 5789999999999998877665
Q ss_pred ccccCc--------hHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHhHhhHHhhHhhhHHHHHHHHhccCCchhhhhHH
Q 001442 457 EILTPY--------LDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRA 528 (1076)
Q Consensus 457 ~~l~~~--------l~~ll~~l~~~l~~~~~~v~~~al~ai~~l~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~~~~lr~ 528 (1076)
+.+... ...++..+...+.+.++.++..+..+++.+.-.-.-. + .+.++..|.-.+-+....++..+|
T Consensus 98 ~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~--~-~~~vL~~Lll~yF~p~t~~~~~Lr- 173 (298)
T PF12719_consen 98 DIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRIS--D-PPKVLSRLLLLYFNPSTEDNQRLR- 173 (298)
T ss_pred hhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCC--c-HHHHHHHHHHHHcCcccCCcHHHH-
Confidence 544333 3478888999999999999999999999976643211 1 235555555555444443434343
Q ss_pred HHHHHHHHHHH
Q 001442 529 KSMECISLVGM 539 (1076)
Q Consensus 529 ~a~~~l~~i~~ 539 (1076)
.|++.+-.
T Consensus 174 ---Q~L~~Ffp 181 (298)
T PF12719_consen 174 ---QCLSVFFP 181 (298)
T ss_pred ---HHHHHHHH
Confidence 45655543
No 159
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=96.67 E-value=0.7 Score=50.87 Aligned_cols=263 Identities=24% Similarity=0.274 Sum_probs=153.3
Q ss_pred chhHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhCCcchHhHHhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Q 001442 142 PELLPFMFQCVSSDSVKLQESAFLIFAQLIINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELA 221 (1076)
Q Consensus 142 ~~ll~~l~~~~~~~~~~~r~~al~~L~~l~~~~~~~l~~~~~~~~~~~l~p~~l~~l~~~~~~~~~~~~~~~~~~l~~l~ 221 (1076)
+...+.+.+.+.+.+..+|..+...++.+- . .. .+..+...+.+.++.+|..+..+|..+-
T Consensus 42 ~~~~~~~~~~l~~~~~~vr~~aa~~l~~~~--------~-------~~----av~~l~~~l~d~~~~vr~~a~~aLg~~~ 102 (335)
T COG1413 42 PEAADELLKLLEDEDLLVRLSAAVALGELG--------S-------EE----AVPLLRELLSDEDPRVRDAAADALGELG 102 (335)
T ss_pred hhhHHHHHHHHcCCCHHHHHHHHHHHhhhc--------h-------HH----HHHHHHHHhcCCCHHHHHHHHHHHHccC
Confidence 467788888888888899988888865441 0 11 2334445556778888988888777653
Q ss_pred ccCcHHHHHhHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHhhcccchhhccchhhHHHHHHHHHHhhcCCCCCccc
Q 001442 222 GTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLW 301 (1076)
Q Consensus 222 ~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~dd~~~ 301 (1076)
. +..++.++..+.+ +.+..+|..+...+..+-.. . .+..++..+.+......+
T Consensus 103 ~----------~~a~~~li~~l~~-d~~~~vR~~aa~aL~~~~~~------------~----a~~~l~~~l~~~~~~~a~ 155 (335)
T COG1413 103 D----------PEAVPPLVELLEN-DENEGVRAAAARALGKLGDE------------R----ALDPLLEALQDEDSGSAA 155 (335)
T ss_pred C----------hhHHHHHHHHHHc-CCcHhHHHHHHHHHHhcCch------------h----hhHHHHHHhccchhhhhh
Confidence 2 3334444444433 45788999988887776441 1 122233333221100000
Q ss_pred cCCCCCCcccCCCCchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHH
Q 001442 302 HSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQV 381 (1076)
Q Consensus 302 ~~~~~e~~d~~e~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i 381 (1076)
... +......+..+...+..+ | -+...+.+.+.+.+.+..+|.++..+|+.+.... ..+
T Consensus 156 ~~~-----~~~~~~~r~~a~~~l~~~----~----~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~--------~~~ 214 (335)
T COG1413 156 AAL-----DAALLDVRAAAAEALGEL----G----DPEAIPLLIELLEDEDADVRRAAASALGQLGSEN--------VEA 214 (335)
T ss_pred hhc-----cchHHHHHHHHHHHHHHc----C----ChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch--------hhH
Confidence 000 000001222222222222 2 2334455566777888899999999999887653 346
Q ss_pred HHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccC
Q 001442 382 LSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTP 461 (1076)
Q Consensus 382 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~aL~~l~~~~~~~~l~~ 461 (1076)
.+.+...+.|++..||..++.++|.+.. ....+.+...+.+ .++.++..+..++. ..
T Consensus 215 ~~~l~~~~~~~~~~vr~~~~~~l~~~~~-----------~~~~~~l~~~l~~-~~~~~~~~~~~~~~----~~------- 271 (335)
T COG1413 215 ADLLVKALSDESLEVRKAALLALGEIGD-----------EEAVDALAKALED-EDVILALLAAAALG----AL------- 271 (335)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhcccCc-----------chhHHHHHHHHhc-cchHHHHHHHHHhc----cc-------
Confidence 6778888999999999999998887542 2344556667777 66666655555544 11
Q ss_pred chHHHHHHHHHHhhcCchhHHHHHHHHHHHHHH
Q 001442 462 YLDGIVSKLLVLLQNGKQMVQEGALTALASVAD 494 (1076)
Q Consensus 462 ~l~~ll~~l~~~l~~~~~~v~~~al~ai~~l~~ 494 (1076)
....-...+...+.+....++..+..+++.+..
T Consensus 272 ~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~ 304 (335)
T COG1413 272 DLAEAALPLLLLLIDEANAVRLEAALALGQIGQ 304 (335)
T ss_pred CchhhHHHHHHHhhcchhhHHHHHHHHHHhhcc
Confidence 112223445555666666666666666665443
No 160
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=96.67 E-value=2.1 Score=50.53 Aligned_cols=133 Identities=16% Similarity=0.177 Sum_probs=92.7
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHc-c--CCCHHHHHHHHHHHHHhcccCCCCcccCCCHh
Q 001442 23 PFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQ-R--SPHPEARAMAAVLLRKLLTRDDSFLWPRLSLH 99 (1076)
Q Consensus 23 ~l~~lL~~~~s~d~~~r~~Ae~~L~~~~~~~p~~~~~~L~~il~-~--~~~~~~R~~a~v~Lk~~i~~~~~~~w~~l~~~ 99 (1076)
-+-.++..+.+.|.+.+|--.-.|..+.+.+|+.. ...+..++ + ++++.+|-+|.-.+-..=. ++
T Consensus 56 Lf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~-lLavNti~kDl~d~N~~iR~~AlR~ls~l~~-----------~e 123 (757)
T COG5096 56 LFPDVIKNVATRDVELKRLLYLYLERYAKLKPELA-LLAVNTIQKDLQDPNEEIRGFALRTLSLLRV-----------KE 123 (757)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHH-HHHHHHHHhhccCCCHHHHHHHHHHHHhcCh-----------HH
Confidence 34457888888899999999999999888888754 33334343 3 8899999998865543211 22
Q ss_pred HHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhcccCCCCcchh--HHHHHHhhcCCCHHHHHHHHHHHHHH
Q 001442 100 TQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPEL--LPFMFQCVSSDSVKLQESAFLIFAQL 170 (1076)
Q Consensus 100 ~~~~lk~~Ll~~l~~~~~~~vr~~~~~~i~~ia~~~~~~~~w~~l--l~~l~~~~~~~~~~~r~~al~~L~~l 170 (1076)
.-..+-..+.+.+. ++++-||+.++.++..+.+.+- ...++. ...+...+.++++.+...|+..|..+
T Consensus 124 l~~~~~~~ik~~l~-d~~ayVRk~Aalav~kly~ld~--~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i 193 (757)
T COG5096 124 LLGNIIDPIKKLLT-DPHAYVRKTAALAVAKLYRLDK--DLYHELGLIDILKELVADSDPIVIANALASLAEI 193 (757)
T ss_pred HHHHHHHHHHHHcc-CCcHHHHHHHHHHHHHHHhcCH--hhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHh
Confidence 33334444444444 7899999999999999987442 344444 44555566788898888888888777
No 161
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=96.67 E-value=0.19 Score=56.96 Aligned_cols=274 Identities=12% Similarity=0.105 Sum_probs=135.0
Q ss_pred hhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhH
Q 001442 317 YSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRV 396 (1076)
Q Consensus 317 ~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~v 396 (1076)
...|++.+.++...+| .+-...+..+..++.+.+..+|..|+..|..++...+ .++..+...|.+.|..+++..
T Consensus 39 K~Laaq~I~kffk~FP--~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~----~~v~kvaDvL~QlL~tdd~~E 112 (556)
T PF05918_consen 39 KRLAAQFIPKFFKHFP--DLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNP----EHVSKVADVLVQLLQTDDPVE 112 (556)
T ss_dssp HHHHHHHHHHHHCC-G--GGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T------T-HHHHHHHHHHHTT---HHH
T ss_pred HHHHHHHHHHHHhhCh--hhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHH----HHHhHHHHHHHHHHhcccHHH
Confidence 4567777777777775 4555666666677889999999999999998887654 467788999999999999998
Q ss_pred HHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccC---chHHHHHHHHHH
Q 001442 397 RWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTP---YLDGIVSKLLVL 473 (1076)
Q Consensus 397 r~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~aL~~l~~~~~~~~l~~---~l~~ll~~l~~~ 473 (1076)
+.++-++|..+...-+. ..+..++..+... .. .+..+|+.++..|..-+..+..+.+.| .-..++..+.+.
T Consensus 113 ~~~v~~sL~~ll~~d~k----~tL~~lf~~i~~~-~~-~de~~Re~~lkFl~~kl~~l~~~~~~p~~E~e~~i~~~ikkv 186 (556)
T PF05918_consen 113 LDAVKNSLMSLLKQDPK----GTLTGLFSQIESS-KS-GDEQVRERALKFLREKLKPLKPELLTPQKEMEEFIVDEIKKV 186 (556)
T ss_dssp HHHHHHHHHHHHHH-HH----HHHHHHHHHHH----H-S-HHHHHHHHHHHHHHGGGS-TTTS---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcH----HHHHHHHHHHHhc-cc-CchHHHHHHHHHHHHHHhhCcHHHhhchHHHHHHHHHHHHHH
Confidence 88888888887654322 2233333333221 13 457899999988877777666655542 122345556667
Q ss_pred hhcCchhHHHHHHHHHHHHHHHhHhhHHhhHhhhHHHHHHHHh--ccCCchhhhhHHHHHHHHHHHHHHhchhhhhhhHH
Q 001442 474 LQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILV--NATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAK 551 (1076)
Q Consensus 474 l~~~~~~v~~~al~ai~~l~~~~~~~~~~~~~~i~~~L~~~l~--~~~~~~~~~lr~~a~~~l~~i~~~~g~~~~~~~~~ 551 (1076)
|++-...--...+..++.+-...+..-.+-...+++.+.+-.. ..-+..+...-.+.+.|+..-..-+.+ .....
T Consensus 187 L~DVTaeEF~l~m~lL~~lk~~~~~~t~~g~qeLv~ii~eQa~Ld~~f~~sD~e~Idrli~C~~~Alp~fs~---~v~Ss 263 (556)
T PF05918_consen 187 LQDVTAEEFELFMSLLKSLKIYGGKQTIEGRQELVDIIEEQADLDQPFDPSDPESIDRLISCLRQALPFFSR---GVSSS 263 (556)
T ss_dssp CTT--HHHHHHHHHHHHTSGG---GSSHHHHHHHHHHHHHHHTTTS---SSSHHHHHHHHHHHHHHGGG-BT---TB--H
T ss_pred HHhccHHHHHHHHHHHHhCccccccCChHHHHHHHHHHHHHhccCCCCCCcCHHHHHHHHHHHHHhhHHhcC---CCChH
Confidence 7664433223333333332210001111223344554443321 111111222223344444331111000 01123
Q ss_pred HHHHHHHHHhcCCCC-CCChhhHHHHHHHHHHHHHhcc-CcccchhhhhHHHHHhc
Q 001442 552 QVMEVLMSLQGSQME-TDDPTTSYMLQAWARLCKCLGQ-DFLPYMSVVMPPLLQSA 605 (1076)
Q Consensus 552 ~ii~~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~-~~~~~l~~i~~~ll~~~ 605 (1076)
.++.++..-.=+.++ ..+..+-.++..+..++...+. +-..+++.+...++..+
T Consensus 264 kfv~y~~~kvlP~l~~l~e~~kl~lLk~lAE~s~~~~~~d~~~~L~~i~~~L~~ym 319 (556)
T PF05918_consen 264 KFVNYMCEKVLPKLSDLPEDRKLDLLKLLAELSPFCGAQDARQLLPSIFQLLKKYM 319 (556)
T ss_dssp HHHHHHHHHTCCCTT-----HHHHHHHHHHHHHTT----THHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHhcCChhhCChHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHHhC
Confidence 344444431111111 1234566788888888877763 34455555555555444
No 162
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=96.65 E-value=0.73 Score=50.72 Aligned_cols=250 Identities=19% Similarity=0.239 Sum_probs=149.7
Q ss_pred HHHHHHHhhcchhhHHHHHHHHHHHHHhcccCCCCcchhHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhCCcchHh
Q 001442 106 SMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLIINFIQCLTSSADRD 185 (1076)
Q Consensus 106 ~~Ll~~l~~~~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~~~~~~~r~~al~~L~~l~~~~~~~l~~~~~~~ 185 (1076)
..+++.+. +++..+|..++..++.+. -.+.++.+...+.+.++.+|..+..+|+.+ .+
T Consensus 46 ~~~~~~l~-~~~~~vr~~aa~~l~~~~--------~~~av~~l~~~l~d~~~~vr~~a~~aLg~~--------~~----- 103 (335)
T COG1413 46 DELLKLLE-DEDLLVRLSAAVALGELG--------SEEAVPLLRELLSDEDPRVRDAAADALGEL--------GD----- 103 (335)
T ss_pred HHHHHHHc-CCCHHHHHHHHHHHhhhc--------hHHHHHHHHHHhcCCCHHHHHHHHHHHHcc--------CC-----
Confidence 34555565 458899999888866442 256889999999999999999999987554 11
Q ss_pred HHhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccCcHHHHHhHHHHHHHHHHHhcCCC----------cchhHHHH
Q 001442 186 RFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAES----------LEEGTRHL 255 (1076)
Q Consensus 186 ~~~~l~p~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~----------~~~~~r~~ 255 (1076)
...+|.++..+.. +++..+|..+...|..+-.... +..++..+.+.. ....+|..
T Consensus 104 --~~a~~~li~~l~~---d~~~~vR~~aa~aL~~~~~~~a----------~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~ 168 (335)
T COG1413 104 --PEAVPPLVELLEN---DENEGVRAAAARALGKLGDERA----------LDPLLEALQDEDSGSAAAALDAALLDVRAA 168 (335)
T ss_pred --hhHHHHHHHHHHc---CCcHhHHHHHHHHHHhcCchhh----------hHHHHHHhccchhhhhhhhccchHHHHHHH
Confidence 1234444444432 6888999999999988754321 222333332211 11234555
Q ss_pred HHHHHHHHHHhhcccchhhccchhhHHHHHHHHHHhhcCCCCCccccCCCCCCcccCCCCchhhHHHHHHHHHHHcCCCc
Q 001442 256 AIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNT 335 (1076)
Q Consensus 256 al~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~dd~~~~~~~~e~~d~~e~~~~~~a~~~l~~l~~~~~~~~ 335 (1076)
+.+.+..+.. +..++.+...+... ....+..+...+..+....
T Consensus 169 a~~~l~~~~~----------------~~~~~~l~~~l~~~-----------------~~~vr~~Aa~aL~~~~~~~---- 211 (335)
T COG1413 169 AAEALGELGD----------------PEAIPLLIELLEDE-----------------DADVRRAAASALGQLGSEN---- 211 (335)
T ss_pred HHHHHHHcCC----------------hhhhHHHHHHHhCc-----------------hHHHHHHHHHHHHHhhcch----
Confidence 5555444422 11222333322211 1124555655655554221
Q ss_pred chHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhH
Q 001442 336 IVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDL 415 (1076)
Q Consensus 336 ~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~ 415 (1076)
..+.+.+...+.+.+|.+|..++.++|.+... .....+...+.+.++.++..+..+.+.+
T Consensus 212 --~~~~~~l~~~~~~~~~~vr~~~~~~l~~~~~~----------~~~~~l~~~l~~~~~~~~~~~~~~~~~~-------- 271 (335)
T COG1413 212 --VEAADLLVKALSDESLEVRKAALLALGEIGDE----------EAVDALAKALEDEDVILALLAAAALGAL-------- 271 (335)
T ss_pred --hhHHHHHHHHhcCCCHHHHHHHHHHhcccCcc----------hhHHHHHHHHhccchHHHHHHHHHhccc--------
Confidence 34556667788899999999999999976542 3345666777888888777766655511
Q ss_pred HhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhc
Q 001442 416 QNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSEN 453 (1076)
Q Consensus 416 ~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~aL~~l~~~ 453 (1076)
........+...+.+ ....++..+..++..+...
T Consensus 272 ---~~~~~~~~l~~~~~~-~~~~~~~~~~~~l~~~~~~ 305 (335)
T COG1413 272 ---DLAEAALPLLLLLID-EANAVRLEAALALGQIGQE 305 (335)
T ss_pred ---CchhhHHHHHHHhhc-chhhHHHHHHHHHHhhccc
Confidence 112223334455555 5677788777777776543
No 163
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=96.61 E-value=0.16 Score=54.57 Aligned_cols=130 Identities=18% Similarity=0.197 Sum_probs=88.6
Q ss_pred chHHHHH-HHHHhhcCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchh
Q 001442 336 IVPVASE-QLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPD 414 (1076)
Q Consensus 336 ~~~~l~~-~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~ 414 (1076)
.+..++. .+...+++.+...|+.|+.+||..+--..+.-..++.-+.. .++..++.||..|+.++..+....+..
T Consensus 23 ~l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~----~~~~~~~~v~~~al~~l~Dll~~~g~~ 98 (298)
T PF12719_consen 23 SLESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKEHLPLFLQ----ALQKDDEEVKITALKALFDLLLTHGID 98 (298)
T ss_pred hHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHH----HHHhCCHHHHHHHHHHHHHHHHHcCch
Confidence 3334443 44578889999999999999998876544433344444443 444458999999999999998877654
Q ss_pred HHhhh--------hhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHh
Q 001442 415 LQNQF--------HPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLL 474 (1076)
Q Consensus 415 ~~~~~--------~~~ll~~l~~~l~~~~~~~v~~~a~~aL~~l~~~~~~~~l~~~l~~ll~~l~~~l 474 (1076)
..... ...++..+.+.+.+ .++.++..|+.++.++.-.-. +.+ -+.++..|+-..
T Consensus 99 ~~~~~~~~~~~~~~~~l~~~l~~~l~~-~~~~~~~~a~EGl~KLlL~~~---i~~-~~~vL~~Lll~y 161 (298)
T PF12719_consen 99 IFDSESDNDESVDSKSLLKILTKFLDS-ENPELQAIAVEGLCKLLLSGR---ISD-PPKVLSRLLLLY 161 (298)
T ss_pred hccchhccCccchHhHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHhcCC---CCc-HHHHHHHHHHHH
Confidence 43222 24688888888988 688999999999998864422 222 245555555443
No 164
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=96.59 E-value=2.4 Score=50.04 Aligned_cols=105 Identities=14% Similarity=0.263 Sum_probs=69.9
Q ss_pred HHHHHHHhhcchhhHHHHHHHHHHHHHhcccCCCCcchhHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhCCcchHh
Q 001442 106 SMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLIINFIQCLTSSADRD 185 (1076)
Q Consensus 106 ~~Ll~~l~~~~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~~~~~~~r~~al~~L~~l~~~~~~~l~~~~~~~ 185 (1076)
..++..+..+....+++..+..+..+..+.-..+.+++.+..|...+.+.-..+|..++..|+.++.. + +
T Consensus 579 ~mi~Rr~~~d~k~~v~k~a~~~l~S~l~~cD~~~~fe~~L~iLq~lCrd~~vsvrk~~~~Sltel~~~------~---p- 648 (1529)
T KOG0413|consen 579 YMIVRRLSTDDKAPVKKAACSLLKSYLSYCDEASKFEVVLSILQMLCRDRMVSVRKTGADSLTELMLR------D---P- 648 (1529)
T ss_pred HHHHHHhccCCCcccchhhHHHHHHHHhccchhhcchhHHHHHHHHhcCcchHHHHHHHHHHHHHHhh------C---c-
Confidence 34555565566777899999988888775433367788888888888888888999998888776311 1 1
Q ss_pred HHhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Q 001442 186 RFQDLLPLMMRTLTESLNNGNEATAQEALELLIEL 220 (1076)
Q Consensus 186 ~~~~l~p~~l~~l~~~~~~~~~~~~~~~~~~l~~l 220 (1076)
....+-..++..+...+.+.+..+...++..+..+
T Consensus 649 r~~~~~~~wl~~li~~~~d~es~v~e~a~~~i~k~ 683 (1529)
T KOG0413|consen 649 RLFSLSSKWLHTLISMLNDTESDVTEHARKLIMKV 683 (1529)
T ss_pred hhhhhhHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 11133344555666666666667777777766654
No 165
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=96.59 E-value=1.4 Score=47.26 Aligned_cols=320 Identities=15% Similarity=0.115 Sum_probs=161.9
Q ss_pred HHHHHHHHHHccCCCHHHHHHHHHHHHHhcccCC--CCcccCCCHhHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHh
Q 001442 56 SLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDD--SFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELAS 133 (1076)
Q Consensus 56 ~~~~~L~~il~~~~~~~~R~~a~v~Lk~~i~~~~--~~~w~~l~~~~~~~lk~~Ll~~l~~~~~~~vr~~~~~~i~~ia~ 133 (1076)
+++..++.++.....++..++..+++--.+.... ...+.......+...-...+..+. ..+..+-...+.+++.++.
T Consensus 65 ~~v~~fi~LlS~~~kdd~v~yvL~li~DmLs~d~sr~~lf~~~a~~~k~~~~~~fl~ll~-r~d~~iv~~~~~Ils~la~ 143 (442)
T KOG2759|consen 65 QYVKTFINLLSHIDKDDTVQYVLTLIDDMLSEDRSRVDLFHDYAHKLKRTEWLSFLNLLN-RQDTFIVEMSFRILSKLAC 143 (442)
T ss_pred HHHHHHHHHhchhhhHHHHHHHHHHHHHHHhhCchHHHHHHHHHHhhhccchHHHHHHHh-cCChHHHHHHHHHHHHHHH
Confidence 4567777777766667777888888887777641 001111111111111234555565 4677777778888888887
Q ss_pred cccC---CCCcchhHHHHHHhhcC-CCHHHHHHHHHHHHHHH---------------HHHHHhh-CCcc-----h-----
Q 001442 134 NILP---ENGWPELLPFMFQCVSS-DSVKLQESAFLIFAQLI---------------INFIQCL-TSSA-----D----- 183 (1076)
Q Consensus 134 ~~~~---~~~w~~ll~~l~~~~~~-~~~~~r~~al~~L~~l~---------------~~~~~~l-~~~~-----~----- 183 (1076)
...- .+...=.+..|...+++ .+...+..+.+||..++ ..++..+ .... .
T Consensus 144 ~g~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifc 223 (442)
T KOG2759|consen 144 FGNCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRYAFVIADGVSLLIRILASTKCGFQLQYQSIFC 223 (442)
T ss_pred hccccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhheeeecCcchhhHHHHhccCcchhHHHHHHHH
Confidence 4211 11223344556555555 56677777888887761 1112222 1000 0
Q ss_pred ------------HhHHhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccCcHH--HHHhHHHH----HHHHHHHhc-
Q 001442 184 ------------RDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRF--LRRQLVDV----VGSMLQIAE- 244 (1076)
Q Consensus 184 ------------~~~~~~l~p~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~--~~~~l~~l----~~~l~~~~~- 244 (1076)
......+++.+...+..+ ..+.+...++.+|..+++..++. .+.+.... +...++.+.
T Consensus 224 iWlLtFn~~~ae~~~~~~li~~L~~Ivk~~---~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~ 300 (442)
T KOG2759|consen 224 IWLLTFNPHAAEKLKRFDLIQDLSDIVKES---TKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKTLQSLEE 300 (442)
T ss_pred HHHhhcCHHHHHHHhhccHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHHHHHHHh
Confidence 001112344444444433 24567777788888888776421 11111111 111122222
Q ss_pred CCCcchhHHHHHHHHHHHHHHhhcccchhhccchhhHHHHHHHHHHhhcCCCCCccccCCCCCCcccCCCCchhhHHHHH
Q 001442 245 AESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECL 324 (1076)
Q Consensus 245 ~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~dd~~~~~~~~e~~d~~e~~~~~~a~~~l 324 (1076)
.+-.|++++. .++++.+-.+.. ......+..|...+..-.+.|--...+..- |+- -.
T Consensus 301 rkysDEDL~~-di~~L~e~L~~s---vq~LsSFDeY~sEl~sG~L~WSP~Hk~e~F----------------W~e---Na 357 (442)
T KOG2759|consen 301 RKYSDEDLVD-DIEFLTEKLKNS---VQDLSSFDEYKSELRSGRLEWSPVHKSEKF----------------WRE---NA 357 (442)
T ss_pred cCCCcHHHHH-HHHHHHHHHHHH---HHhhccHHHHHHHHHhCCcCCCccccccch----------------HHH---hH
Confidence 2223444443 356666554421 111122334545444433332111111111 221 11
Q ss_pred HHHHHHcCCCcchHHHHHHHHHhhc-CCChhHHHHHHHHHHHHHhhcHHHHHHhHHH--HHHHHHhhCCCCChhHHHHHH
Q 001442 325 DRLAIALGGNTIVPVASEQLPAYLA-APEWQKHHAALIALAQIAEGCAKVMVKNLEQ--VLSMVLNSFRDPHPRVRWAAI 401 (1076)
Q Consensus 325 ~~l~~~~~~~~~~~~l~~~l~~~l~-~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~--i~~~l~~~l~d~~~~vr~~a~ 401 (1076)
+++- +.-+ .++..+...++ +.|+..-..|+.-+|..+++.|+... .+.+ --..+.+.+++++|.||.-|+
T Consensus 358 ~rln-----enny-ellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~-vv~k~ggKe~vM~Llnh~d~~Vry~AL 430 (442)
T KOG2759|consen 358 DRLN-----ENNY-ELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKA-VVEKYGGKERVMNLLNHEDPEVRYHAL 430 (442)
T ss_pred HHHh-----hccH-HHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhH-HHHHhchHHHHHHHhcCCCchHHHHHH
Confidence 1111 1111 24444555555 44677778889999999888775321 1221 235778889999999999999
Q ss_pred HHHHHhhh
Q 001442 402 NAIGQLST 409 (1076)
Q Consensus 402 ~~l~~l~~ 409 (1076)
.|+..+..
T Consensus 431 lavQ~lm~ 438 (442)
T KOG2759|consen 431 LAVQKLMV 438 (442)
T ss_pred HHHHHHHh
Confidence 99988764
No 166
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=96.57 E-value=0.028 Score=48.57 Aligned_cols=97 Identities=15% Similarity=0.244 Sum_probs=76.0
Q ss_pred ccCchHHHHHHHHHHhhcCc----hhHHHHHHHHHHHHHHHhHhhHHhhHhhhHHHHHHHHhccCCchhhhhHHHHHHHH
Q 001442 459 LTPYLDGIVSKLLVLLQNGK----QMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECI 534 (1076)
Q Consensus 459 l~~~l~~ll~~l~~~l~~~~----~~v~~~al~ai~~l~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l 534 (1076)
+.+++=.++..+-..+.+.+ ..-|+.++.+|+.++..+|+.+..+.++++-.|...+.. ..+|..+++|+
T Consensus 5 L~~~~LGil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~~------~eL~~~al~~W 78 (107)
T smart00802 5 LKDHFLGILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALEI------PELRSLALRCW 78 (107)
T ss_pred HHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc------hhHHHHHHHHH
Confidence 44555566777777776654 345899999999999999988888888888888877653 34899999999
Q ss_pred HHHHHHhchhhhhhhHHHHHHHHHHHh
Q 001442 535 SLVGMAVGKDKFRDDAKQVMEVLMSLQ 561 (1076)
Q Consensus 535 ~~i~~~~g~~~~~~~~~~ii~~l~~~~ 561 (1076)
..+.+.+..+...|.+.+++..+.+.+
T Consensus 79 ~~~i~~L~~~~l~~ll~~~~~~i~~~~ 105 (107)
T smart00802 79 HVLIKTLKEEELGPLLDQIFAAILPLW 105 (107)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHhc
Confidence 999999988778888888777776643
No 167
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=96.56 E-value=2.9 Score=55.07 Aligned_cols=254 Identities=14% Similarity=0.121 Sum_probs=145.5
Q ss_pred cCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHH---hhhhhhhHH
Q 001442 349 AAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQ---NQFHPQVLP 425 (1076)
Q Consensus 349 ~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~---~~~~~~ll~ 425 (1076)
++.+..+|+..+.++..+.....+.++.-.+.|+..+-....++++.+-..|..++..++..+-+.+. ...+..++.
T Consensus 1193 ~s~~~eVrE~ILeCv~qmI~s~~~nIkSGWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~DlV~ 1272 (1780)
T PLN03076 1193 KSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFTDCVN 1272 (1780)
T ss_pred hcCchHHHHHHHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHH
Confidence 35677999999999999998888777777778888888778899999888999999888765433221 134555666
Q ss_pred HHHhhccCCCChhHHHHHHHHHHHhhhcCCc--------------------------cc---cc------CchHHHHHHH
Q 001442 426 ALAGAMDDFQNPRVQAHAASAVLNFSENCTP--------------------------EI---LT------PYLDGIVSKL 470 (1076)
Q Consensus 426 ~l~~~l~~~~~~~v~~~a~~aL~~l~~~~~~--------------------------~~---l~------~~l~~ll~~l 470 (1076)
.+.+......+.++...|...|..+...+-. +. +. .+-=.++..|
T Consensus 1273 cL~~Fa~q~~~~nISL~AI~lL~~~~~~La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~L 1352 (1780)
T PLN03076 1273 CLIAFTNSRFNKDISLNAIAFLRFCATKLAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGL 1352 (1780)
T ss_pred HHHHHHhCcCcccccHHHHHHHHHHHHHHHhccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHH
Confidence 5555444322355555666555544221100 00 00 1112344455
Q ss_pred HHHhhcCchhHHHHHHHHHHHHHHHhHhhHHh-h----HhhhHHHHHHHHhccC---------------Cchhhh----h
Q 001442 471 LVLLQNGKQMVQEGALTALASVADSSQEHFQK-Y----YDAVMPFLKAILVNAT---------------DKSNRM----L 526 (1076)
Q Consensus 471 ~~~l~~~~~~v~~~al~ai~~l~~~~~~~~~~-~----~~~i~~~L~~~l~~~~---------------~~~~~~----l 526 (1076)
..+..+...+||..|+..+-.+....|..|.+ + +..++-.++..+.... +.+... +
T Consensus 1353 s~l~~D~RlEVR~~ALqtLF~iL~~yG~~Fs~~~W~~if~~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl 1432 (1780)
T PLN03076 1353 SELSFDPRPEIRKSALQVLFDTLRNHGHLFSLPLWERVFESVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWL 1432 (1780)
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhhhhHH
Confidence 55566788999999999999999988888865 3 3333333443333210 000001 1
Q ss_pred HHHHHHHHHHHHHHhch--hhhhhhHHHHHHHHHHHhcCCCCCCChhhHHHHHHHHHHHHHhccCcccch-hhhhHHHHH
Q 001442 527 RAKSMECISLVGMAVGK--DKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYM-SVVMPPLLQ 603 (1076)
Q Consensus 527 r~~a~~~l~~i~~~~g~--~~~~~~~~~ii~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l-~~i~~~ll~ 603 (1076)
......++..+..-+.. +.+.+.++.++.++..... ..++.+......|+.++....|..|.+-- ..++..+.+
T Consensus 1433 ~eT~~~AL~~lvdLft~fFd~L~~~L~~~l~ll~~ci~---q~n~~la~ig~~~l~~li~~ng~~F~~~~W~~i~~~~~~ 1509 (1780)
T PLN03076 1433 YETCTLALQLVVDLFVKFYPTVNPLLKKVLMLLVSFIK---RPHQSLAGIGIAAFVRLMSNAGHLFSDEKWLEVVLSLKE 1509 (1780)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---CchHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHH
Confidence 22222233222211110 1222334445555444222 13455666677889999988888876533 344444444
Q ss_pred hc
Q 001442 604 SA 605 (1076)
Q Consensus 604 ~~ 605 (1076)
.+
T Consensus 1510 lf 1511 (1780)
T PLN03076 1510 AA 1511 (1780)
T ss_pred HH
Confidence 44
No 168
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=96.56 E-value=2.2 Score=49.10 Aligned_cols=195 Identities=16% Similarity=0.258 Sum_probs=116.0
Q ss_pred CHHHHHHHHHHHHHHHccCcHHHH-HhHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHhhcccchhhccchhhHHHH
Q 001442 206 NEATAQEALELLIELAGTEPRFLR-RQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRL 284 (1076)
Q Consensus 206 ~~~~~~~~~~~l~~l~~~~~~~~~-~~l~~l~~~l~~~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~l 284 (1076)
+.......+..+..+++.....+. ..+..++..++.++......+++ ..++.++.+++.+.. -| ..-+..+
T Consensus 147 ~~~~l~~ll~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di-~~~L~vldaii~y~~-iP------~~sl~~~ 218 (464)
T PF11864_consen 147 EESNLSDLLQFLVNVIKFNFNYLDEDEISSLVDQICTICKSTSSEDDI-EACLSVLDAIITYGD-IP------SESLSPC 218 (464)
T ss_pred hhhhHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHH-HHHHHHHHHHHHcCc-CC------hHHHHHH
Confidence 444556677777777776666555 56777888888876554434444 677999999988421 12 1234555
Q ss_pred HHHHHHhhcCCCCCccccCCCCCCcccCCCCchhhHHHHHHHHHH-HcCCCcchHHHHHHHH--HhhcCCChhHHHHHHH
Q 001442 285 FAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAI-ALGGNTIVPVASEQLP--AYLAAPEWQKHHAALI 361 (1076)
Q Consensus 285 ~~~l~~~l~~~~dd~~~~~~~~e~~d~~e~~~~~~a~~~l~~l~~-~~~~~~~~~~l~~~l~--~~l~~~~~~~r~aal~ 361 (1076)
+.+|+...... +....+-+++..|+. +.| ...+..+..++. ..-..++.+.-.+|+.
T Consensus 219 i~vLCsi~~~~-------------------~l~~~~w~~m~nL~~S~~g-~~~i~~L~~iL~~~~~~~~~~~~~lRGAv~ 278 (464)
T PF11864_consen 219 IEVLCSIVNSV-------------------SLCKPSWRTMRNLLKSHLG-HSAIRTLCDILRSPDPQNKRDINVLRGAVF 278 (464)
T ss_pred HHHHhhHhccc-------------------ccchhHHHHHHHHHcCccH-HHHHHHHHHHHcccCccccccHHHHhhHHH
Confidence 55555543211 122334456666663 333 344444544441 1112346777789999
Q ss_pred HHHHHHhhcHHHHHHh--H--HHHHHHHHhhCCCCChhHHHHHHHHHHHhh-hhhchhHHhhhhhhhHHHHH
Q 001442 362 ALAQIAEGCAKVMVKN--L--EQVLSMVLNSFRDPHPRVRWAAINAIGQLS-TDLGPDLQNQFHPQVLPALA 428 (1076)
Q Consensus 362 ~l~~l~~~~~~~~~~~--l--~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~-~~~~~~~~~~~~~~ll~~l~ 428 (1076)
.++.+.-+.++.-.+. + ..+++.+...++..++.|-...+.++..+. ..++..+....+..++..+.
T Consensus 279 ~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~~~~v~~eIl~~i~~ll~~~~~~~l~~~~W~~~~~i~~ 350 (464)
T PF11864_consen 279 FLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSNSPRVDYEILLLINRLLDGKYGRELSEEDWDIILDIIE 350 (464)
T ss_pred HHHHHHhccccCCcceecccHHHHHHHHHHHHhCCCCeehHHHHHHHHHHHhHhhhhhhcccCchHHHHHHH
Confidence 9998876653211111 2 248899999999888888877777777777 55555444445555555444
No 169
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.53 E-value=3.8 Score=51.72 Aligned_cols=130 Identities=16% Similarity=0.178 Sum_probs=95.8
Q ss_pred HHHHHHHHHHcCCCcchHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHH
Q 001442 321 QECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAA 400 (1076)
Q Consensus 321 ~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a 400 (1076)
.+++-.+-...+ +.+-.++|.+...+.+++-..|.-|+..+|.+.......+....+.+....+..+.|.++.||..+
T Consensus 243 he~i~~L~~~~p--~ll~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~ 320 (1266)
T KOG1525|consen 243 HELILELWRIAP--QLLLAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRFNDISVEVRMEC 320 (1266)
T ss_pred HHHHHHHHHhhH--HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhcccchHHHHHHHHHhccCChhhhhhH
Confidence 345555554443 556668888888899999999999999999987765544445566788888889999999999998
Q ss_pred HHHHHHhhhhhc----------------------------------hhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHH
Q 001442 401 INAIGQLSTDLG----------------------------------PDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASA 446 (1076)
Q Consensus 401 ~~~l~~l~~~~~----------------------------------~~~~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~a 446 (1076)
.....++.-.-+ ..+.-.+.+.++..+.+.+.| ..++||..|...
T Consensus 321 v~~~~~~l~~~~~~~~~~~~~~~l~~~~~D~~~rir~~v~i~~~~v~~~~l~~~~~ll~~~~eR~rD-Kk~~VR~~Am~~ 399 (1266)
T KOG1525|consen 321 VESIKQCLLNNPSIAKASTILLALRERDLDEDVRVRTQVVIVACDVMKFKLVYIPLLLKLVAERLRD-KKIKVRKQAMNG 399 (1266)
T ss_pred HHHhHHHHhcCchhhhHHHHHHHHHhhcCChhhhheeeEEEEEeehhHhhhhhhHHHHHHHHHHHhh-hhHHHHHHHHHH
Confidence 877666542211 011113444477778888999 899999999999
Q ss_pred HHHhhhc
Q 001442 447 VLNFSEN 453 (1076)
Q Consensus 447 L~~l~~~ 453 (1076)
|..+-++
T Consensus 400 LaqlYk~ 406 (1266)
T KOG1525|consen 400 LAQLYKN 406 (1266)
T ss_pred HHHHHHH
Confidence 9998774
No 170
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=96.51 E-value=0.051 Score=61.63 Aligned_cols=193 Identities=12% Similarity=0.140 Sum_probs=135.9
Q ss_pred hhHHHHHHHHHHhhcCCCCCccccCCCCCCcccCCCCchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhcCCChhHHHH
Q 001442 279 QFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHA 358 (1076)
Q Consensus 279 ~~~~~l~~~l~~~l~~~~dd~~~~~~~~e~~d~~e~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~a 358 (1076)
+|-..++|.+++++...+. ..|-.-.+-++.+..++.++.+-..++|.+...+.+.+...|+-
T Consensus 326 eyq~~i~p~l~kLF~~~Dr-----------------~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~ 388 (690)
T KOG1243|consen 326 EYQVRIIPVLLKLFKSPDR-----------------QIRLLLLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQ 388 (690)
T ss_pred ccccchhhhHHHHhcCcch-----------------HHHHHHHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHH
Confidence 3666788888887654321 12333333445555566655566778888888999999999999
Q ss_pred HHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCChh
Q 001442 359 ALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPR 438 (1076)
Q Consensus 359 al~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~ 438 (1076)
.+.++..++...... ..=.+++..+-..-.|+++-+|.....|+|.++.++.+.. .-..+..+..+.++| +-..
T Consensus 389 Tlksm~~La~kL~~~--~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~---R~~vL~~aftralkd-pf~p 462 (690)
T KOG1243|consen 389 TLKSMAVLAPKLSKR--NLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASV---RKRVLASAFTRALKD-PFVP 462 (690)
T ss_pred HHHHHHHHHhhhchh--hhcHHHHHHHHhhCccccCcccccceeeecccccccchhh---hccccchhhhhhhcC-CCCC
Confidence 999999998876542 1112456666666669999999999999999998876643 223344445567888 7777
Q ss_pred HHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHhH
Q 001442 439 VQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQ 497 (1076)
Q Consensus 439 v~~~a~~aL~~l~~~~~~~~l~~~l~~ll~~l~~~l~~~~~~v~~~al~ai~~l~~~~~ 497 (1076)
-|.++..++..-.+.... ...-..|+|.+....-+++..+|..+..++...-....
T Consensus 463 aR~a~v~~l~at~~~~~~---~~va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl~kl~ 518 (690)
T KOG1243|consen 463 ARKAGVLALAATQEYFDQ---SEVANKILPSLVPLTVDPEKTVRDTAEKAIRQFLEKLE 518 (690)
T ss_pred chhhhhHHHhhcccccch---hhhhhhccccccccccCcccchhhHHHHHHHHHHhhhh
Confidence 888888888777666553 23446778888888888888999888888776544433
No 171
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.28 E-value=3.8 Score=48.88 Aligned_cols=69 Identities=10% Similarity=0.130 Sum_probs=53.9
Q ss_pred HHHhhcCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhc
Q 001442 344 LPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLG 412 (1076)
Q Consensus 344 l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~ 412 (1076)
+.....+++|.+|.+-.....-+-..|...+......++..++..-+|++|.++..+...+-.+.+.+.
T Consensus 283 ~~~~~~~~~~~v~~aL~d~~~~Ll~~C~~sL~~c~~~llesll~L~ndEn~ki~~~~~~~l~~~~eq~~ 351 (1014)
T KOG4524|consen 283 IIPLRKHNNESVREALADFVSILLTRCENSLNNCEKHLLESLVHLENDENPKLPSHCVKLLEVLNEQLH 351 (1014)
T ss_pred hhhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHH
Confidence 333447889999998888777777777766666666677888888899999999999988888776554
No 172
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=96.27 E-value=1.9 Score=50.75 Aligned_cols=145 Identities=11% Similarity=0.249 Sum_probs=102.8
Q ss_pred hhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCC-CCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhc
Q 001442 353 WQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFR-DPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAM 431 (1076)
Q Consensus 353 ~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l 431 (1076)
...|..+..+|+.++-...+ .....+|.+.+.|. .....+|.....+++.+|..... ..+..+|.+...|
T Consensus 945 ~~vra~~vvTlakmcLah~~----LaKr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YTa-----m~d~YiP~I~~~L 1015 (1529)
T KOG0413|consen 945 DKVRAVGVVTLAKMCLAHDR----LAKRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYTA-----MTDRYIPMIAASL 1015 (1529)
T ss_pred hHHHHHHHHHHHHHHhhhhH----HHHHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHHH-----HHHHhhHHHHHHh
Confidence 45777788888877654333 23346777777774 45667899888899888866532 2445678888999
Q ss_pred cCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHhHhhHHhhHhhhHHHH
Q 001442 432 DDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFL 511 (1076)
Q Consensus 432 ~~~~~~~v~~~a~~aL~~l~~~~~~~~l~~~l~~ll~~l~~~l~~~~~~v~~~al~ai~~l~~~~~~~~~~~~~~i~~~L 511 (1076)
.| +++-||..++.-|.+++.. + +..+-..++=+++-.+-+.++++|..+=-+++.+...-.+.| ++..++..+
T Consensus 1016 ~D-p~~iVRrqt~ilL~rLLq~---~-~vKw~G~Lf~Rf~l~l~D~~edIr~~a~f~~~~vL~~~~P~~--f~~~FVe~i 1088 (1529)
T KOG0413|consen 1016 CD-PSVIVRRQTIILLARLLQF---G-IVKWNGELFIRFMLALLDANEDIRNDAKFYISEVLQSEEPNF--FPLNFVEYI 1088 (1529)
T ss_pred cC-chHHHHHHHHHHHHHHHhh---h-hhhcchhhHHHHHHHHcccCHHHHHHHHHHHHHHHhhcCccc--hHHHHHHHH
Confidence 99 9999999999999988754 2 234555666666666677888999999999999887765554 334455554
Q ss_pred HH
Q 001442 512 KA 513 (1076)
Q Consensus 512 ~~ 513 (1076)
+.
T Consensus 1089 ~~ 1090 (1529)
T KOG0413|consen 1089 IA 1090 (1529)
T ss_pred HH
Confidence 43
No 173
>KOG1837 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.26 E-value=3.4 Score=51.90 Aligned_cols=100 Identities=16% Similarity=0.141 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHHHHhhhchhhhHHHHHHhHhhhhcCCCCHHHHHHHHHHHHHHHHHhhhhhHhhHHhHHHHHHhhccCC
Q 001442 818 VFDQVGEILGTLIKTFKAAFLPFFDELSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREAALKYYETYLPFLLEACNDE 897 (1076)
Q Consensus 818 ~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~ 897 (1076)
+...++-+++......+.++.|+..+++-. . .+.+...|..|+..+..++...|+.+.+.+++.+|.+-+.+.|.
T Consensus 1520 v~~~li~~i~~~~~a~~~d~~pl~~k~l~~----t-rss~~~~r~~ai~~~~~l~~~lge~~~~lL~q~iPfLaEL~ED~ 1594 (1621)
T KOG1837|consen 1520 VSKLLIAEIASDSVADKDDLKPLNQKILKK----T-RSSSRKARYLAIIQVKLLYTKLGENVIVLLPQSIPFLAELMEDE 1594 (1621)
T ss_pred HHHHHHHHHHhhccCChhhhHHHHHHHHHH----h-ccccHHHHHHHHHHHHHHHHHhcchhHHhhhhhhHHHHHHHhhh
Confidence 444555566666655565555555554432 2 34456789999999999999999999999999999999999999
Q ss_pred ChhHHhhhhHHHHHHHhhcCCCchH
Q 001442 898 NQDVRQAAVYGLGVCAEFGGSVVKP 922 (1076)
Q Consensus 898 ~~~vr~~a~~~lg~l~~~~~~~~~~ 922 (1076)
+.+|...+...+..+=...|+.+..
T Consensus 1595 ~~~Ve~~~q~li~q~e~~lGE~l~~ 1619 (1621)
T KOG1837|consen 1595 DDEVECLCQKLIRQLEEVLGEPLQS 1619 (1621)
T ss_pred HHHHHHHHHHHHHHHHHHhchhhhh
Confidence 9999888888777777777775443
No 174
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=96.24 E-value=0.042 Score=47.98 Aligned_cols=99 Identities=23% Similarity=0.306 Sum_probs=73.9
Q ss_pred HHHHhHHHHHHHHHhhCCC----CChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHH
Q 001442 373 VMVKNLEQVLSMVLNSFRD----PHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVL 448 (1076)
Q Consensus 373 ~~~~~l~~i~~~l~~~l~d----~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~aL~ 448 (1076)
++.+++=.++..+-..+.| ....-|..+..+++.+.+..++.+ ..+.++++-.|-..++. +.++..|+.+..
T Consensus 4 fL~~~~Lgil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i-~~~~pQI~a~L~sal~~---~~l~~~al~~W~ 79 (107)
T PF08064_consen 4 FLQPHILGILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHI-SSARPQIMACLQSALEI---PELREEALSCWN 79 (107)
T ss_pred HHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHH-HHHHHHHHHHHHHHhCC---hhhHHHHHHHHH
Confidence 4556665666666555555 455678889999999999555544 45666666666666665 589999999999
Q ss_pred HhhhcCCcccccCchHHHHHHHHHHhh
Q 001442 449 NFSENCTPEILTPYLDGIVSKLLVLLQ 475 (1076)
Q Consensus 449 ~l~~~~~~~~l~~~l~~ll~~l~~~l~ 475 (1076)
.|+..++++.+.|.+++++..+++.++
T Consensus 80 ~fi~~L~~~~l~~ll~~~~~~l~~~~~ 106 (107)
T PF08064_consen 80 CFIKTLDEEDLGPLLDQIFAILLPLWD 106 (107)
T ss_pred HHHHHCCHHHHHHHHHHHHHHHHHhcc
Confidence 999999988888999888888877654
No 175
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=96.17 E-value=2.9 Score=46.47 Aligned_cols=305 Identities=14% Similarity=0.089 Sum_probs=148.0
Q ss_pred HHHHccCCCHHHHHHHHHHHHHhcccCCCCcccCCCHhHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhcccCCC-C
Q 001442 62 AHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPEN-G 140 (1076)
Q Consensus 62 ~~il~~~~~~~~R~~a~v~Lk~~i~~~~~~~w~~l~~~~~~~lk~~Ll~~l~~~~~~~vr~~~~~~i~~ia~~~~~~~-~ 140 (1076)
+.+|. ..+.-+...|+-+|-..+.... ..........+-+-|...+.+..+...+.....+++.+.+..--+. -
T Consensus 107 l~lL~-~~d~~i~~~a~~iLt~l~~~~~----~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f 181 (429)
T cd00256 107 FNLLN-RQDQFIVHMSFSILAKLACFGL----AKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAF 181 (429)
T ss_pred HHHHc-CCchhHHHHHHHHHHHHHhcCc----cccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHH
Confidence 33443 5677899999999999886541 1223333444444555555433334455566678888776432211 2
Q ss_pred c-chhHHHHHHhhcCCC--HHHHHHHHHHHHHHHHHHHHhhCCcchHhHHhhhHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 001442 141 W-PELLPFMFQCVSSDS--VKLQESAFLIFAQLIINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELL 217 (1076)
Q Consensus 141 w-~~ll~~l~~~~~~~~--~~~r~~al~~L~~l~~~~~~~l~~~~~~~~~~~l~p~~l~~l~~~~~~~~~~~~~~~~~~l 217 (1076)
| .+-++.|...++... ....-.++.++ .++..-.+......-..++|.+++.+... ..+++..-++.+|
T Consensus 182 ~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~l-----WlLSF~~~~~~~~~~~~~i~~l~~i~k~s---~KEKvvRv~l~~l 253 (429)
T cd00256 182 VLADGVPTLVKLLSNATLGFQLQYQSIFCI-----WLLTFNPHAAEVLKRLSLIQDLSDILKES---TKEKVIRIVLAIF 253 (429)
T ss_pred HHccCHHHHHHHHhhccccHHHHHHHHHHH-----HHHhccHHHHHhhccccHHHHHHHHHHhh---hhHHHHHHHHHHH
Confidence 3 224566666665422 12222222222 11111100000111135677777776653 3567777888888
Q ss_pred HHHHccCcHH--HHHhHHHHHH----HHHHHh-cCCCcchhHHHHHHHHHHHHHHhhcccchhhccchhhHHHHHHHHHH
Q 001442 218 IELAGTEPRF--LRRQLVDVVG----SMLQIA-EAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMS 290 (1076)
Q Consensus 218 ~~l~~~~~~~--~~~~l~~l~~----~l~~~~-~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~ 290 (1076)
..++....+. -..+...++. .+++.+ ..+-.|+++..- ++.+....+.. -.....+..|...+..-.+.
T Consensus 254 ~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~~DedL~ed-l~~L~e~L~~~---~k~ltsfD~Y~~El~sg~L~ 329 (429)
T cd00256 254 RNLISKRVDREVKKTAALQMVQCKVLKTLQSLEQRKYDDEDLTDD-LKFLTEELKNS---VQDLSSFDEYKSELRSGRLH 329 (429)
T ss_pred HHHhhcccccchhhhHHHHHHHcChHHHHHHHhcCCCCcHHHHHH-HHHHHHHHHHH---HHHcCCHHHHHHHHhcCCcc
Confidence 8887743110 1111122221 122222 222334554433 55555555421 01112244455544433322
Q ss_pred hhcCCCCCccccCCCCCCcccCCCCchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhh-cCCChhHHHHHHHHHHHHHhh
Q 001442 291 MLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYL-AAPEWQKHHAALIALAQIAEG 369 (1076)
Q Consensus 291 ~l~~~~dd~~~~~~~~e~~d~~e~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l-~~~~~~~r~aal~~l~~l~~~ 369 (1076)
|--...++. -|+ +-..++-. +. + .++..+.+.+ ++.|+..-..|+.=+|.+++.
T Consensus 330 WSp~H~se~----------------FW~---EN~~kf~~----~~-~-~llk~L~~iL~~s~d~~~laVAc~Dige~vr~ 384 (429)
T cd00256 330 WSPVHKSEK----------------FWR---ENADRLNE----KN-Y-ELLKILIHLLETSVDPIILAVACHDIGEYVRH 384 (429)
T ss_pred CCCCCCCch----------------HHH---HHHHHHHh----cc-h-HHHHHHHHHHhcCCCcceeehhhhhHHHHHHH
Confidence 210000111 121 11111111 11 1 1333333444 355667777888899999887
Q ss_pred cHHH--HHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhh
Q 001442 370 CAKV--MVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLST 409 (1076)
Q Consensus 370 ~~~~--~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~ 409 (1076)
.|.. +...+. .-..+++.+.++++.||..|+.|++.+..
T Consensus 385 ~P~gr~i~~~lg-~K~~vM~Lm~h~d~~Vr~eAL~avQklm~ 425 (429)
T cd00256 385 YPRGKDVVEQLG-GKQRVMRLLNHEDPNVRYEALLAVQKLMV 425 (429)
T ss_pred CccHHHHHHHcC-cHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 6531 111111 23567788899999999999999998753
No 176
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=96.16 E-value=1.4 Score=49.08 Aligned_cols=241 Identities=13% Similarity=0.008 Sum_probs=136.4
Q ss_pred HHHHHHHHhhcchhhHHHHHHHHHHHHHhcccCCCCcchhHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhCCcchH
Q 001442 105 KSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLIINFIQCLTSSADR 184 (1076)
Q Consensus 105 k~~Ll~~l~~~~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~~~~~~~r~~al~~L~~l~~~~~~~l~~~~~~ 184 (1076)
...|+..|..+.+..++...+..+. . ..=+..+..+++.+.++++.+|..+...|+.+ .
T Consensus 56 ~~~L~~aL~~d~~~ev~~~aa~al~---~-----~~~~~~~~~L~~~L~d~~~~vr~aaa~ALg~i--------~----- 114 (410)
T TIGR02270 56 TELLVSALAEADEPGRVACAALALL---A-----QEDALDLRSVLAVLQAGPEGLCAGIQAALGWL--------G----- 114 (410)
T ss_pred HHHHHHHHhhCCChhHHHHHHHHHh---c-----cCChHHHHHHHHHhcCCCHHHHHHHHHHHhcC--------C-----
Confidence 3455666654556666654332221 1 11122478888888888888888888888654 1
Q ss_pred hHHhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccCcHHHHHhHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHH
Q 001442 185 DRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLA 264 (1076)
Q Consensus 185 ~~~~~l~p~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~r~~al~~l~~l~ 264 (1076)
.+.....|...+.+.++.++..++..+..... .-.+.+...++ +.+..+|..|+..+..+.
T Consensus 115 ------~~~a~~~L~~~L~~~~p~vR~aal~al~~r~~-----------~~~~~L~~~L~--d~d~~Vra~A~raLG~l~ 175 (410)
T TIGR02270 115 ------GRQAEPWLEPLLAASEPPGRAIGLAALGAHRH-----------DPGPALEAALT--HEDALVRAAALRALGELP 175 (410)
T ss_pred ------chHHHHHHHHHhcCCChHHHHHHHHHHHhhcc-----------ChHHHHHHHhc--CCCHHHHHHHHHHHHhhc
Confidence 11223334444567788888877766654211 11233444453 457788999888887774
Q ss_pred HhhcccchhhccchhhHHHHHHHHHHhhcCCCCCccccCCCCCCcccCCCCchhhHHHHHHHHHHHcCCCcchHHHHHHH
Q 001442 265 EARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQL 344 (1076)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~dd~~~~~~~~e~~d~~e~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l 344 (1076)
.. ..++. +...+.+. +..++..|...+..+ |..... ..+
T Consensus 176 ~~------------~a~~~----L~~al~d~-----------------~~~VR~aA~~al~~l----G~~~A~----~~l 214 (410)
T TIGR02270 176 RR------------LSEST----LRLYLRDS-----------------DPEVRFAALEAGLLA----GSRLAW----GVC 214 (410)
T ss_pred cc------------cchHH----HHHHHcCC-----------------CHHHHHHHHHHHHHc----CCHhHH----HHH
Confidence 41 11122 22222111 122566665555433 322222 333
Q ss_pred HHhhcCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhH
Q 001442 345 PAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVL 424 (1076)
Q Consensus 345 ~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll 424 (1076)
........+..+......++.. + -+..++.+...++|+. +|..+++++|.+.. +..+
T Consensus 215 ~~~~~~~g~~~~~~l~~~lal~--~--------~~~a~~~L~~ll~d~~--vr~~a~~AlG~lg~-----------p~av 271 (410)
T TIGR02270 215 RRFQVLEGGPHRQRLLVLLAVA--G--------GPDAQAWLRELLQAAA--TRREALRAVGLVGD-----------VEAA 271 (410)
T ss_pred HHHHhccCccHHHHHHHHHHhC--C--------chhHHHHHHHHhcChh--hHHHHHHHHHHcCC-----------cchH
Confidence 3333444444444444444332 1 1256677777777765 99999999998653 3467
Q ss_pred HHHHhhccCCCChhHHHHHHHHHHHhhh
Q 001442 425 PALAGAMDDFQNPRVQAHAASAVLNFSE 452 (1076)
Q Consensus 425 ~~l~~~l~~~~~~~v~~~a~~aL~~l~~ 452 (1076)
+.|+..+.+ +.++..|-.++..++.
T Consensus 272 ~~L~~~l~d---~~~aR~A~eA~~~ItG 296 (410)
T TIGR02270 272 PWCLEAMRE---PPWARLAGEAFSLITG 296 (410)
T ss_pred HHHHHHhcC---cHHHHHHHHHHHHhhC
Confidence 788888887 3488888888888763
No 177
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=96.14 E-value=0.045 Score=47.30 Aligned_cols=99 Identities=23% Similarity=0.365 Sum_probs=76.0
Q ss_pred HHHHHhHHHHHHHHHhhCCCCC---h-hHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHH
Q 001442 372 KVMVKNLEQVLSMVLNSFRDPH---P-RVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAV 447 (1076)
Q Consensus 372 ~~~~~~l~~i~~~l~~~l~d~~---~-~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~aL 447 (1076)
+++.+++=.++..+-..+.|.+ | .-|..+..+++.+.+..++.+ ..+.++++-.|...|+. +..|..|+.++
T Consensus 3 ~fL~~~~LGil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i-~~a~pQI~acL~saL~~---~eL~~~al~~W 78 (107)
T smart00802 3 DFLKDHFLGILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHI-SSALPQIMACLQSALEI---PELRSLALRCW 78 (107)
T ss_pred HHHHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCc---hhHHHHHHHHH
Confidence 3556677777777777777766 2 348889999999999777666 56777777777777765 67999999999
Q ss_pred HHhhhcCCcccccCchHHHHHHHHHHh
Q 001442 448 LNFSENCTPEILTPYLDGIVSKLLVLL 474 (1076)
Q Consensus 448 ~~l~~~~~~~~l~~~l~~ll~~l~~~l 474 (1076)
..|+..++++.+.|.++.++..+.+..
T Consensus 79 ~~~i~~L~~~~l~~ll~~~~~~i~~~~ 105 (107)
T smart00802 79 HVLIKTLKEEELGPLLDQIFAAILPLW 105 (107)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHhc
Confidence 999999987777777777777666554
No 178
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=96.05 E-value=0.86 Score=51.45 Aligned_cols=118 Identities=19% Similarity=0.203 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHhHHHHH----Hh------hc
Q 001442 727 SDFIIPALVEALHKEPDTEICASMLDSLNECIQISGPLLDEGQVRSIVDEIKQVITASSSRKRERA----ER------AK 796 (1076)
Q Consensus 727 ~~~i~~~l~~~l~~~~~~~~~~~~l~~l~~~i~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~----~~------~~ 796 (1076)
++.++..|++.++.|++..+...+..+++.++..+. .-.+.-.+++++.+...++.......... .. ..
T Consensus 310 LnPiIrpLMdSIK~Een~~LQ~rsA~slA~Li~~~~-~rkp~PndKIvkNLc~flC~D~seTP~~~~~~~~~~gILsl~k 388 (441)
T PF12054_consen 310 LNPIIRPLMDSIKREENELLQQRSAESLARLIQLCV-DRKPCPNDKIVKNLCTFLCVDTSETPEFSHNVDKKDGILSLRK 388 (441)
T ss_pred ccHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHh-CCCCCCcHHHHHHHhhhhccCcccCCCCCCCcchhhcccchhh
Confidence 556778889999999999999999999999998876 22333446677777777754321111000 00 00
Q ss_pred CCC-CChHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhchhhhHHHHH
Q 001442 797 AED-FDAEESELIKEENEQEEEVFDQVGEILGTLIKTFKAAFLPFFDELS 845 (1076)
Q Consensus 797 ~ed-~d~~~~~~~~e~~e~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~ 845 (1076)
+++ -|..+....+++......-+.++...|..+++.+|+.....+..++
T Consensus 389 ~~~~~~~~~~~~~~~~~~~a~I~RrGA~~aL~~l~~~FG~~Lf~~lP~Lw 438 (441)
T PF12054_consen 389 EEDKADHADAASEEREQKEARIQRRGAELALEQLAKRFGSSLFEKLPKLW 438 (441)
T ss_pred hcccccccccccchhhhhhhHHHhcCHHHHHHHHHHHHhHHHHHhhhHHH
Confidence 000 0111111111223344667889999999999999998755444444
No 179
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=96.03 E-value=3.3 Score=46.00 Aligned_cols=72 Identities=18% Similarity=0.207 Sum_probs=52.0
Q ss_pred hhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcc-cccCchHHHHHHHHHHhhcCchhHHHHHHHHHHHHH
Q 001442 421 PQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPE-ILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVA 493 (1076)
Q Consensus 421 ~~ll~~l~~~l~~~~~~~v~~~a~~aL~~l~~~~~~~-~l~~~l~~ll~~l~~~l~~~~~~v~~~al~ai~~l~ 493 (1076)
-.++..|.+.|..+.++.+..-||.-++.|++..+.. .+..-+ ..=..++.++++++++||..|+.|+..+.
T Consensus 352 ~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~l-g~K~~vM~Lm~h~d~~Vr~eAL~avQklm 424 (429)
T cd00256 352 YELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQL-GGKQRVMRLLNHEDPNVRYEALLAVQKLM 424 (429)
T ss_pred hHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHc-CcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 3577777777754356777788999999999987522 111111 12345788999999999999999999873
No 180
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=96.03 E-value=11 Score=51.88 Aligned_cols=299 Identities=14% Similarity=0.121 Sum_probs=160.6
Q ss_pred HHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhch-------hHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhh
Q 001442 380 QVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGP-------DLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSE 452 (1076)
Q Consensus 380 ~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~-------~~~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~aL~~l~~ 452 (1076)
.+++.|...+...+..++.++..++..+.+.... ...-+.+..+++.+++...+ +.+.-+.+.+.++..+++
T Consensus 984 i~ldal~~~l~~~~~~~~~~g~~~l~~i~~~~~~~l~~~~~~~~lpi~~~l~~k~~~lCy~-~~wy~k~gG~~gI~~l~~ 1062 (3550)
T KOG0889|consen 984 TFLDALVESLSHENSEMRPAGVRALKVIFSTSTLILGSPERAFKLPMFEYLLEKLCHLCYD-STWYAKDGGVNGIKCLIE 1062 (3550)
T ss_pred HHHHHHHHHHhccchhhhhhHHHHHHHHHHHHHHhhcCcchhhccchHHHHHHHHHHHhcc-HhHHHHcCCCceeeeehh
Confidence 4678999999999999999999998887654321 12234677788888888888 888888889999999988
Q ss_pred cCCcccccCchHHHHHHHHHHhhcCchhHHH----HHHHHHHHHHHHh----H--hhHHhhHhhhHHHHHHHHhccCCch
Q 001442 453 NCTPEILTPYLDGIVSKLLVLLQNGKQMVQE----GALTALASVADSS----Q--EHFQKYYDAVMPFLKAILVNATDKS 522 (1076)
Q Consensus 453 ~~~~~~l~~~l~~ll~~l~~~l~~~~~~v~~----~al~ai~~l~~~~----~--~~~~~~~~~i~~~L~~~l~~~~~~~ 522 (1076)
.+....+..+...++..++..+.+...++.. .+-..+-.+-..+ . +.=...+..+...+...+.+++
T Consensus 1063 ~~~~~~l~d~~~d~~~~l~fvl~d~~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~lv~eL~npN--- 1139 (3550)
T KOG0889|consen 1063 SMPSLWLLDFQVDILKALFFVLKDTESEVSSLPLDEAKDILMDILRVIFIDELAEEERAKSAMNVFSPLVLELFNPN--- 1139 (3550)
T ss_pred hchHHHHHHHHHHHhhhHHHhhcCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHcCCc---
Confidence 8875445556667777777776654322222 1111111111111 0 0001122333444444343322
Q ss_pred hhhhHHHHHHHHHHHHHHhchhhhhhhHHHHHHHHH-HHhcCCCCC-CChhhHHHHHHHHHHHHHhccCcccchhhhhHH
Q 001442 523 NRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLM-SLQGSQMET-DDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPP 600 (1076)
Q Consensus 523 ~~~lr~~a~~~l~~i~~~~g~~~~~~~~~~ii~~l~-~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~l~~i~~~ 600 (1076)
..+|..+..++..++...|++ ........-+.++ ......+.. .....-..+.++ ..|...++.+-.|-+.....
T Consensus 1140 -~~VR~~~~~~L~~i~~~s~~~-v~~L~~p~K~~ll~p~f~k~lr~~p~~~qig~vd~~-~fC~~l~p~~f~~~~~l~~l 1216 (3550)
T KOG0889|consen 1140 -SDVREFSQKLLRLISELSGKS-VVKLLEPFKDVLLSPIFKKPLRALPFTIQIGHLDAI-TFCLSLGPCLFDFTEELYRL 1216 (3550)
T ss_pred -hHHHHHHHHHHHHHHHHcCCc-HHHHHHHHHHHHhccccccccccCCHHHHhhhHHHH-HHHHHcCCcccCchHHHHHH
Confidence 368999999999998776643 2222222222221 111100000 000111122222 25555676665555444432
Q ss_pred HHHhccCCCCccccCCCCCccccCCCCcccchh-hcCCceeeecchhHHHHHHHHHHHHHHHHHhhh---cccccHHHHH
Q 001442 601 LLQSAQLKPDVTITSADSDNEIEDSDDDSMETI-TLGDKRIGIKTSVLEEKATACNMLCCYADELKE---GFFPWIDQVA 676 (1076)
Q Consensus 601 ll~~~~~~~~~~~~~~d~d~~~~~~d~~~~~~~-~~~~~~~~v~~~~~~~k~~A~~~l~~i~~~~~~---~~~p~l~~~~ 676 (1076)
........ +.++++.. ..........+....-|..+++++++.....+. ...+|-+.++
T Consensus 1217 ~~~~~~La-----------------~~~~~~~~~i~k~~~~k~~~~l~~Lr~~ci~ll~~~~~~~d~~~~~~~~~r~kii 1279 (3550)
T KOG0889|consen 1217 KRFLIALA-----------------DAEEDELATIQKTSDYKNSSSLVRLRVACIKLLAACMKLSDFRTPQHAELREKII 1279 (3550)
T ss_pred HHHHHHhh-----------------hhhhhhhhhhhcccccccccccccchhHHHHHHHHHHhcccccchhhhhhhhHHH
Confidence 21111000 00111111 111112233333444567777777776655433 3567788888
Q ss_pred HHhhhcccccCCHHHHHHHHHHHHHHH
Q 001442 677 PTLVPLLKFYFHEEVRKAAVSAMPELL 703 (1076)
Q Consensus 677 ~~l~~~l~~~~~~~vr~~a~~~l~~L~ 703 (1076)
..+.+.+.. .+.++...+..++....
T Consensus 1280 ~v~fk~l~~-~~~Ei~~~~~~~l~~v~ 1305 (3550)
T KOG0889|consen 1280 AVFFKSLYK-RSSELIEVALEGLRKVL 1305 (3550)
T ss_pred HHHHHHHcC-ChHHHHHHHHHHHHhhh
Confidence 888887764 36778777777765543
No 181
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=95.99 E-value=0.17 Score=48.65 Aligned_cols=133 Identities=22% Similarity=0.256 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHHHH-hhhcccccHHHHHHHh------------hhcccccCCHHHHHHHHHHHHHHHHHHHHHHHh----
Q 001442 650 KATACNMLCCYADE-LKEGFFPWIDQVAPTL------------VPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEK---- 712 (1076)
Q Consensus 650 k~~A~~~l~~i~~~-~~~~~~p~l~~~~~~l------------~~~l~~~~~~~vr~~a~~~l~~L~~~~~~~~~~---- 712 (1076)
|..|+.+|..+++. -+..|..|-+.++|.- ...+.| .++.+|.+|+.++..++...+..+..
T Consensus 3 R~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~D-p~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~ 81 (182)
T PF13251_consen 3 RQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKD-PSPKVRAAAASALAALLEGSKPFLAQAEES 81 (182)
T ss_pred hHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcC-CchhHHHHHHHHHHHHHHccHHHHHHHHhc
Confidence 56899999999999 4556777766665543 122333 48999999999999998866543321
Q ss_pred CCCCCC---CHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHHHHH
Q 001442 713 GLAPGR---NESYVKQLSDFIIPALVEALHKEPDTEICASMLDSLNECIQISGPL-LDEGQVRSIVDEIKQVITA 783 (1076)
Q Consensus 713 ~~~~~~---~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~l~~l~~~i~~~g~~-~~~~~~~~~~~~l~~~l~~ 783 (1076)
....++ -+..+...+-.+-..|+..++.|.+..+....++++..++...... +.++.+..++..+...+.+
T Consensus 82 ~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~ 156 (182)
T PF13251_consen 82 KGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRH 156 (182)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhc
Confidence 111111 1222334444455677888888888888889999999888776543 6667666766666655554
No 182
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.92 E-value=0.17 Score=53.75 Aligned_cols=132 Identities=16% Similarity=0.226 Sum_probs=109.6
Q ss_pred HHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccC
Q 001442 382 LSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTP 461 (1076)
Q Consensus 382 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~aL~~l~~~~~~~~l~~ 461 (1076)
+..++..+++.|..||..|...+..+...- +.....+...+++.+...+.| .+..||......+..++....++.+.|
T Consensus 60 lkeLl~qlkHhNakvRkdal~glkd~l~s~-p~~l~~~~~~ll~~~~~~i~D-~~~~vR~~~~qll~~~i~~~~~e~~sp 137 (393)
T KOG2149|consen 60 LKELLSQLKHHNAKVRKDALNGLKDLLKSH-PAELQSHLYALLQKLRELILD-DDSLVRDALYQLLDSLILPACKEDQSP 137 (393)
T ss_pred HHHHHhhhcCchHhhhHHHHHHHHHHHHhC-hHHHHHHHHHHHHHhhhhhcC-ccccHHHHHHHHHHHHHhhcchhhhcc
Confidence 445677889999999999999999988763 333345677888888888888 788999999999999887776666899
Q ss_pred chHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHhHhhHHhhHhhhHHHHHHHH
Q 001442 462 YLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAIL 515 (1076)
Q Consensus 462 ~l~~ll~~l~~~l~~~~~~v~~~al~ai~~l~~~~~~~~~~~~~~i~~~L~~~l 515 (1076)
+..-+++.+...+.+..+.+|..++..+..++..+++.|..+...+++.....+
T Consensus 138 ~~~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p~~~~~~~~il~n~~d~i 191 (393)
T KOG2149|consen 138 MVSLLMPYISSAMTHITPEIQEDSLKFLSLLLERYPDTFSRYASKILENFKDVI 191 (393)
T ss_pred hHHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHcChHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998887776666555555444
No 183
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=95.87 E-value=0.2 Score=46.56 Aligned_cols=50 Identities=28% Similarity=0.466 Sum_probs=36.1
Q ss_pred HHHHHHHHHHhhcch-hhHHHHHHHHHHHHHhcc--cCCCCcchhHHHHHHhh
Q 001442 103 SLKSMLLQSIQLESA-KSISKKLCDTVSELASNI--LPENGWPELLPFMFQCV 152 (1076)
Q Consensus 103 ~lk~~Ll~~l~~~~~-~~vr~~~~~~i~~ia~~~--~~~~~w~~ll~~l~~~~ 152 (1076)
+||+.|+..|..+.. ...-+.++++++.+|... ++.+.|++|...+....
T Consensus 3 eikplLIsCL~~q~~k~s~~KiL~~iVs~Va~~v~~~~~~~W~eL~d~Ils~~ 55 (174)
T PF04510_consen 3 EIKPLLISCLTMQETKESDFKILRRIVSHVAYEVFDLQEGGWDELSDCILSLS 55 (174)
T ss_pred chHHHHHHHHHhhcccHhHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHhh
Confidence 578888888876443 345566777777777644 47789999998888755
No 184
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=95.86 E-value=1.9 Score=46.60 Aligned_cols=136 Identities=14% Similarity=0.213 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHhhhchhh----hHHHHHHhHhhhhcCC--CCHHHHHHHHHHHHHHHHHhhhhhHh----hHHhHHHHHH
Q 001442 822 VGEILGTLIKTFKAAFLP----FFDELSSYLTPMWGKD--KTAEERRIAICIFDDVAEQCREAALK----YYETYLPFLL 891 (1076)
Q Consensus 822 ~~~~l~~l~~~~~~~~~~----~~~~l~~~l~~~l~~~--~~~~~r~~al~~l~~l~~~~~~~~~~----~~~~ll~~l~ 891 (1076)
+..++..+++..|+.+.+ .++.+....+.++.++ ..|+.|..-+..+..+.++|.+.+.. .+..++..++
T Consensus 92 vL~l~~~ii~kl~~~~~~~v~~I~~~vf~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~ 171 (319)
T PF08767_consen 92 VLSLMATIINKLGELIQPQVPQILEAVFECTLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIV 171 (319)
T ss_dssp HHHHHHHHHHHHGGGCCCCHHHHHHHHHHHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHH
Confidence 455667777777765444 4444555566666554 35788988899999999998775533 5788888899
Q ss_pred hhccCCChhHHhhhhHHHHHHHhhcCC--------CchHHHHHHHHHHHHhhcCCCCCChhhhhHHHHHHHHHHHHHhh
Q 001442 892 EACNDENQDVRQAAVYGLGVCAEFGGS--------VVKPLVGEALSRLNVVIRHPNALQPENLMAYDNAVSALGKICQF 962 (1076)
Q Consensus 892 ~~l~~~~~~vr~~a~~~lg~l~~~~~~--------~~~~~~~~il~~L~~~l~~~~~~~~~~~~~~~na~~al~~i~~~ 962 (1076)
-++++++.+|...+..++..+...... -+..|+-.+++.+...+.++.+ ...-+.-+..+.+++..
T Consensus 172 wg~kh~~~~I~~~~L~~l~~ll~~~~~~~~~~~~~F~~~y~~~il~~if~vltD~~H-----k~gf~~q~~iL~~Lf~~ 245 (319)
T PF08767_consen 172 WGFKHTNREISETGLNILLELLNNVSKTNPEFANQFYQQYYLDILQDIFSVLTDSDH-----KSGFKLQSQILSNLFRL 245 (319)
T ss_dssp HHHTSSSHHHHHHHHHHHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHHHHHHSTT------GGGHHHHHHHHHHHHHH
T ss_pred HHhCCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHCccc-----HHHHHHHHHHHHHHHHH
Confidence 999999999999999999988876543 1345677888888888887753 34444555666666643
No 185
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=95.79 E-value=0.12 Score=57.26 Aligned_cols=119 Identities=21% Similarity=0.134 Sum_probs=85.8
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhh
Q 001442 341 SEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFH 420 (1076)
Q Consensus 341 ~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~ 420 (1076)
+..+.+.+.+.+..+|.++..+||.+-. +...+.+...+.+++|.||.+++.+++....
T Consensus 88 ~~~L~~~L~d~~~~vr~aaa~ALg~i~~----------~~a~~~L~~~L~~~~p~vR~aal~al~~r~~----------- 146 (410)
T TIGR02270 88 LRSVLAVLQAGPEGLCAGIQAALGWLGG----------RQAEPWLEPLLAASEPPGRAIGLAALGAHRH----------- 146 (410)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhcCCc----------hHHHHHHHHHhcCCChHHHHHHHHHHHhhcc-----------
Confidence 5566667778888899999999986532 2455677778889999999888877776221
Q ss_pred hhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCchhHHHHHHHHHHHHH
Q 001442 421 PQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVA 493 (1076)
Q Consensus 421 ~~ll~~l~~~l~~~~~~~v~~~a~~aL~~l~~~~~~~~l~~~l~~ll~~l~~~l~~~~~~v~~~al~ai~~l~ 493 (1076)
.-.+.+...|+| +++.|+..|+.+|+.+-.. ..++.|...+.+.++.||..++.+++.+.
T Consensus 147 -~~~~~L~~~L~d-~d~~Vra~A~raLG~l~~~-----------~a~~~L~~al~d~~~~VR~aA~~al~~lG 206 (410)
T TIGR02270 147 -DPGPALEAALTH-EDALVRAAALRALGELPRR-----------LSESTLRLYLRDSDPEVRFAALEAGLLAG 206 (410)
T ss_pred -ChHHHHHHHhcC-CCHHHHHHHHHHHHhhccc-----------cchHHHHHHHcCCCHHHHHHHHHHHHHcC
Confidence 123456666777 8899999999998886422 12344556688889999999888886653
No 186
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=95.79 E-value=3.5 Score=46.91 Aligned_cols=106 Identities=15% Similarity=0.163 Sum_probs=69.6
Q ss_pred cCCChhHHHHHHHHHHHHHhhcHHHHHHhHH-HHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHH-H
Q 001442 349 AAPEWQKHHAALIALAQIAEGCAKVMVKNLE-QVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLP-A 426 (1076)
Q Consensus 349 ~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~-~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~-~ 426 (1076)
.+++-.+..+++-++..++-..++.-...+. ..+..+.+.+.++++.+|..+.|+|..+.=.....+.......+-. .
T Consensus 429 ~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~ 508 (678)
T KOG1293|consen 429 MDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANL 508 (678)
T ss_pred hCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHH
Confidence 3444445555555555544433322223332 4677888889999999999999999998755444443334444433 3
Q ss_pred HHhhccCCCChhHHHHHHHHHHHhhhcCC
Q 001442 427 LAGAMDDFQNPRVQAHAASAVLNFSENCT 455 (1076)
Q Consensus 427 l~~~l~~~~~~~v~~~a~~aL~~l~~~~~ 455 (1076)
+.....| +++.|++.++..|.++.-+..
T Consensus 509 i~~l~nd-~d~~Vqeq~fqllRNl~c~~~ 536 (678)
T KOG1293|consen 509 ILDLIND-PDWAVQEQCFQLLRNLTCNSR 536 (678)
T ss_pred HHHHHhC-CCHHHHHHHHHHHHHhhcCcH
Confidence 4456667 999999999999999987654
No 187
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=95.68 E-value=3.3 Score=43.92 Aligned_cols=216 Identities=18% Similarity=0.171 Sum_probs=129.0
Q ss_pred CCCHHHHHHHHHHHHHHHc--cCcHHHHHhHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHhhcccch-hhccchhh
Q 001442 204 NGNEATAQEALELLIELAG--TEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPG-MMRKLPQF 280 (1076)
Q Consensus 204 ~~~~~~~~~~~~~l~~l~~--~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~-~~~~~~~~ 280 (1076)
..++.....++.-|.+..+ ......-|+-..+...+.+++ ++.....|-..|+|....+.+. .++. +.+.+.-|
T Consensus 22 ~~EWAD~is~L~kL~k~lq~~~~~~~~IP~k~~v~krLaqCL-~P~LPsGVH~KaLevY~~IF~~--ig~~~L~~dl~i~ 98 (307)
T PF04118_consen 22 SSEWADYISFLGKLLKALQNSNNQFPYIPHKLQVSKRLAQCL-NPALPSGVHQKALEVYEYIFER--IGPDGLAQDLPIY 98 (307)
T ss_pred hhhHHHHHHHHHHHHHHHhccCCCCceeCcHHHHHHHHHHhc-CCCCChHHHHHHHHHHHHHHHh--cCHHHHHhhcHHH
Confidence 3455555555555555555 222223344445555555555 4667888999999988887763 1111 12223334
Q ss_pred HHHHHHHHHHhhcCCCCCccccCCCCCCcccCCCCchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhcCCChhHHHHHH
Q 001442 281 INRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAAL 360 (1076)
Q Consensus 281 ~~~l~~~l~~~l~~~~dd~~~~~~~~e~~d~~e~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal 360 (1076)
...++|.+-.. + -.+-|.++..+.+.+-
T Consensus 99 ~~GLfpl~~~a----------------------------s-------------i~Vkp~lL~i~e~~~l----------- 126 (307)
T PF04118_consen 99 SPGLFPLFSYA----------------------------S-------------IQVKPQLLDIYEKYYL----------- 126 (307)
T ss_pred HHHHHHHHHHH----------------------------H-------------HhhHHHHHHHHHHHhc-----------
Confidence 44444443111 0 1233444444443332
Q ss_pred HHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCChhHH
Q 001442 361 IALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQ 440 (1076)
Q Consensus 361 ~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~v~ 440 (1076)
..+..+.+.++.++..+++++.|++..+...+...+..+...++.. .++.. +...+. .+|.+|
T Consensus 127 --------pL~~~L~p~l~~li~slLpGLede~sE~~~~~~~ll~~l~~~v~~~---~F~~~----lwl~ii--~sp~~R 189 (307)
T PF04118_consen 127 --------PLGPALRPCLKGLILSLLPGLEDEGSEFFDRTLKLLDKLKEAVGDK---YFWQC----LWLCII--TSPSRR 189 (307)
T ss_pred --------CccHHHHHHHHHHHHHhccccccCCchHHHHHHHHHHHHHHhcChh---HHHHH----HHHHHh--cCcchh
Confidence 1223455777888999999999999999999999999998877663 23433 443333 367888
Q ss_pred HHHHHHHHHhhhcCC-----------cccccCchHHHHHHHHHHhhcCchhHHHHHHHHHHH
Q 001442 441 AHAASAVLNFSENCT-----------PEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALAS 491 (1076)
Q Consensus 441 ~~a~~aL~~l~~~~~-----------~~~l~~~l~~ll~~l~~~l~~~~~~v~~~al~ai~~ 491 (1076)
..|...+..-..... ...+.+--.-++..+...+++.+.-|++.+++.+-.
T Consensus 190 l~al~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Llv~al~~~L~D~~iLVqR~~LDlLl~ 251 (307)
T PF04118_consen 190 LGALNYLLRRLPKFQNDELSLSSEEQEYCLGPDPGLLVRALCACLEDENILVQRGFLDLLLS 251 (307)
T ss_pred HHHHHHHHHhCCcccccccccchHHHHHhcCCCccHHHHHHHHHhCCchHHHHHHHHHHHHH
Confidence 888777666554433 112334445677888888888888888877776654
No 188
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=95.63 E-value=5.5 Score=45.43 Aligned_cols=147 Identities=16% Similarity=0.185 Sum_probs=109.3
Q ss_pred CCChhHHHHHHHHHHHHHhhcHHHHH-HhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhh-hhhhHHHH
Q 001442 350 APEWQKHHAALIALAQIAEGCAKVMV-KNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQF-HPQVLPAL 427 (1076)
Q Consensus 350 ~~~~~~r~aal~~l~~l~~~~~~~~~-~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~-~~~ll~~l 427 (1076)
..+...+.||+.++-.++......-. ..-..+...+++.+.||+..|..++.-++..++..+++.- ..+ -...+..+
T Consensus 388 ~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~k-skfl~~ngId~l 466 (678)
T KOG1293|consen 388 IKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLK-SKFLRNNGIDIL 466 (678)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHH-HHHHHcCcHHHH
Confidence 45677889999999888776542111 1123466777778899999999999999999988876533 333 34688889
Q ss_pred HhhccCCCChhHHHHHHHHHHHhhhcCCccc-ccCchHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHhHh
Q 001442 428 AGAMDDFQNPRVQAHAASAVLNFSENCTPEI-LTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQE 498 (1076)
Q Consensus 428 ~~~l~~~~~~~v~~~a~~aL~~l~~~~~~~~-l~~~l~~ll~~l~~~l~~~~~~v~~~al~ai~~l~~~~~~ 498 (1076)
.+.+.+ +++.+|..+.|+|..+.=++.... ..++-.--...+..+.+++++.|++.++..+..+.-...+
T Consensus 467 ~s~~~~-~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~~~ 537 (678)
T KOG1293|consen 467 ESMLTD-PDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNSRK 537 (678)
T ss_pred HHHhcC-CCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCcHH
Confidence 999999 889999999999999987665432 2334444456677788999999999999999887654433
No 189
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=95.58 E-value=6.3 Score=45.74 Aligned_cols=82 Identities=16% Similarity=0.194 Sum_probs=60.7
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHhhhc---CchH--HHHHHHHHHccCC-CHHHHHHHHHHHHHhcccCCCCcccCCCH
Q 001442 25 ETLISHLMSTSNEQRSEAELLFNLCKQQ---DPDS--LTLKLAHLLQRSP-HPEARAMAAVLLRKLLTRDDSFLWPRLSL 98 (1076)
Q Consensus 25 ~~lL~~~~s~d~~~r~~Ae~~L~~~~~~---~p~~--~~~~L~~il~~~~-~~~~R~~a~v~Lk~~i~~~~~~~w~~l~~ 98 (1076)
..+|..+.|++..+|+..-+.++.+.+. +|.- =+..|++...+.. +.-+|.++.++++.-+ ..+++
T Consensus 26 ~plLlkl~S~~~~VR~kV~eil~hin~Rik~~~~I~LPv~~Ll~q~~~~~~s~~vrnfsliyi~~g~--------~Rl~~ 97 (501)
T PF13001_consen 26 PPLLLKLASPHASVRKKVIEILSHINKRIKSNPSIQLPVEALLKQYKEPSDSSFVRNFSLIYIEMGF--------DRLDD 97 (501)
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHHHhccCCcCcCcHHHHHHHHhCCCCchHHHHHHHHHHHHhh--------hcCCH
Confidence 3345555789999999999998775432 3321 1356777666644 7899999999998776 45689
Q ss_pred hHHHHHHHHHHHHHhh
Q 001442 99 HTQSSLKSMLLQSIQL 114 (1076)
Q Consensus 99 ~~~~~lk~~Ll~~l~~ 114 (1076)
+.|..+...+++.+..
T Consensus 98 ~e~~~llP~ll~~is~ 113 (501)
T PF13001_consen 98 EERRELLPSLLKGISK 113 (501)
T ss_pred HHHHHHHHHHHHhhcc
Confidence 9999999999998863
No 190
>KOG1851 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.56 E-value=8 Score=48.83 Aligned_cols=171 Identities=9% Similarity=0.080 Sum_probs=102.8
Q ss_pred hhHHHHHHHHHHHcCCCcchHHHHHHHHHhh-cCCChhHHHHHHHHHHHHHhhcHH-HHHHhHHHHHHHHHhhCCCCChh
Q 001442 318 SVGQECLDRLAIALGGNTIVPVASEQLPAYL-AAPEWQKHHAALIALAQIAEGCAK-VMVKNLEQVLSMVLNSFRDPHPR 395 (1076)
Q Consensus 318 ~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l-~~~~~~~r~aal~~l~~l~~~~~~-~~~~~l~~i~~~l~~~l~d~~~~ 395 (1076)
..+..|.+.++....+..+.+.++..+.... .+.+|++|.+.+.-+..+.-...- ......++|-..+.+.+.|....
T Consensus 1505 ~~a~~~~~lm~~~~~~~~l~~e~l~~l~~~~~~~~tw~vr~avl~fl~~~vy~n~Fv~~~~~r~dI~~l~~s~l~D~~i~ 1584 (1710)
T KOG1851|consen 1505 NSALLCHSLMSLSWIGHHLQPEFLRDLKMLTADSSTWRVRSAVLKFLQTVVYSNIFVSQELRRDDIRKLLESLLNDDQIE 1584 (1710)
T ss_pred HHHHHHHHHHHhhccchhhHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHcchHHH
Confidence 4566666766666554677888888887533 466899999988877766543221 23355678888888999999889
Q ss_pred HHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCC-CChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHh
Q 001442 396 VRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDF-QNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLL 474 (1076)
Q Consensus 396 vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~-~~~~v~~~a~~aL~~l~~~~~~~~l~~~l~~ll~~l~~~l 474 (1076)
||..|..+++-+...-...+ .+............. .+.....+|..+|+.++-.++-. +..+++..+..+....
T Consensus 1585 vre~Aa~~Lsgl~~~s~~~~----~~~k~d~~~~~~~s~s~~~i~~HgavlgLgA~VlafPy~-vP~wip~~L~~Ls~fa 1659 (1710)
T KOG1851|consen 1585 VREEAAKCLSGLLQGSKFQF----VSDKRDTTSNILQSKSKDEIKAHGAVLGLGAIVLAFPYV-VPLWIPKPLMNLSSFA 1659 (1710)
T ss_pred HHHHHHHHHHHHHhcccccc----chHhhhhhhhhhhhcchHHHHhhhhHHHHHHHHHhcccc-chhhhHHHHHHHHhhc
Confidence 99999999998875432222 111112222222221 22333466778888887766532 3334555555444444
Q ss_pred hcCchhHHHHHHHHHHHHHH
Q 001442 475 QNGKQMVQEGALTALASVAD 494 (1076)
Q Consensus 475 ~~~~~~v~~~al~ai~~l~~ 494 (1076)
.++ ..++..+-.+++.+-.
T Consensus 1660 ~e~-~~i~~tvkktvseFrr 1678 (1710)
T KOG1851|consen 1660 RES-AAIKQTVKKTVSEFRR 1678 (1710)
T ss_pred CCc-hHHHHHHHHHHHHHHH
Confidence 443 4455555555554433
No 191
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.54 E-value=0.25 Score=50.40 Aligned_cols=137 Identities=14% Similarity=0.092 Sum_probs=106.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHhHhhhhcCCCCHHHHHHHHHHHHHHHHHhhhhhHhhHHhHHHHHHhhc
Q 001442 815 EEEVFDQVGEILGTLIKTFKAAFLPFFDELSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREAALKYYETYLPFLLEAC 894 (1076)
Q Consensus 815 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~ll~~l~~~l 894 (1076)
+|.........+..+...+++...+-+..++..+.+-++ +....+-..|+.++++++.+++..+..-++.++-.++...
T Consensus 101 dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslK-NlRS~VsraA~~t~~difs~ln~~i~~~ld~lv~~Ll~ka 179 (334)
T KOG2933|consen 101 DWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLK-NLRSAVSRAACMTLADIFSSLNNSIDQELDDLVTQLLHKA 179 (334)
T ss_pred HHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 466666778888999999999888888888888888773 4445566778999999999999988888888888888877
Q ss_pred cCCChhHHhhhhHHHHHHHhhcCCCchHHHHHHHHHHHHhhcCCCCCChhhhhHHHHHHHHHHHHHhhcC
Q 001442 895 NDENQDVRQAAVYGLGVCAEFGGSVVKPLVGEALSRLNVVIRHPNALQPENLMAYDNAVSALGKICQFHR 964 (1076)
Q Consensus 895 ~~~~~~vr~~a~~~lg~l~~~~~~~~~~~~~~il~~L~~~l~~~~~~~~~~~~~~~na~~al~~i~~~~~ 964 (1076)
...+..||..|-.+|..+..+..+ ..+++.|...+... +..+|.+++.|+.+.+...+
T Consensus 180 ~~dnrFvreda~kAL~aMV~~vtp------~~~L~~L~~~~~~~------n~r~r~~a~~~~~~~v~rl~ 237 (334)
T KOG2933|consen 180 SQDNRFVREDAEKALVAMVNHVTP------QKLLRKLIPILQHS------NPRVRAKAALCFSRCVIRLG 237 (334)
T ss_pred cccchHHHHHHHHHHHHHHhccCh------HHHHHHHHHHHhhh------chhhhhhhhccccccceecc
Confidence 788899999999999999988654 33566666665543 34677788877766665543
No 192
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=95.46 E-value=4.6 Score=43.43 Aligned_cols=137 Identities=13% Similarity=0.131 Sum_probs=89.3
Q ss_pred HHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhcH---HHHH-HhHHHHHHHHHh-hCCCCChhHHHHHHHHHHHhhhhhc
Q 001442 338 PVASEQLPAYLAAPEWQKHHAALIALAQIAEGCA---KVMV-KNLEQVLSMVLN-SFRDPHPRVRWAAINAIGQLSTDLG 412 (1076)
Q Consensus 338 ~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~---~~~~-~~l~~i~~~l~~-~l~d~~~~vr~~a~~~l~~l~~~~~ 412 (1076)
|.+++++..++.|.|.....++..++|.+++.-. ..+. ..+..++..+.+ .-.|.|-.++.+++.++..++--.+
T Consensus 314 p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~ 393 (604)
T KOG4500|consen 314 PQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVS 393 (604)
T ss_pred cHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCC
Confidence 5588888899999999999999999999997543 2222 345566666665 4457788999999999999874332
Q ss_pred hhHHhhhh-hhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcc--cccCchHHHHHHHHHHhhcCc
Q 001442 413 PDLQNQFH-PQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPE--ILTPYLDGIVSKLLVLLQNGK 478 (1076)
Q Consensus 413 ~~~~~~~~-~~ll~~l~~~l~~~~~~~v~~~a~~aL~~l~~~~~~~--~l~~~l~~ll~~l~~~l~~~~ 478 (1076)
.. ..+. ..+...++..++- ..|.|.-.-...+..+.+..+.- .+. --+.++..|..--++++
T Consensus 394 nk--a~~~~aGvteaIL~~lk~-~~ppv~fkllgTlrM~~d~qe~~a~eL~-kn~~l~ekLv~Wsks~D 458 (604)
T KOG4500|consen 394 NK--AHFAPAGVTEAILLQLKL-ASPPVTFKLLGTLRMIRDSQEYIACELA-KNPELFEKLVDWSKSPD 458 (604)
T ss_pred ch--hhccccchHHHHHHHHHh-cCCcchHHHHHHHHHHHhchHHHHHHHh-cCHHHHHHHHHhhhCCc
Confidence 21 1222 3466777777776 66777777777777766553310 010 11345555555545544
No 193
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=95.42 E-value=5.6 Score=44.16 Aligned_cols=321 Identities=13% Similarity=0.154 Sum_probs=170.9
Q ss_pred hhHHHHHHHHHHHHHhh---cH--HHHHHhHHHHHHHHHhhCCC------C-ChhHHHHHHHHHHHhhhhh--chhHHhh
Q 001442 353 WQKHHAALIALAQIAEG---CA--KVMVKNLEQVLSMVLNSFRD------P-HPRVRWAAINAIGQLSTDL--GPDLQNQ 418 (1076)
Q Consensus 353 ~~~r~aal~~l~~l~~~---~~--~~~~~~l~~i~~~l~~~l~d------~-~~~vr~~a~~~l~~l~~~~--~~~~~~~ 418 (1076)
-..|--|+..|...... .+ ..+.++++.++..+...+.. + +.++-..|+.++|.+..+. ...+..+
T Consensus 7 ~~~r~daY~~l~~~l~~~~~~~~~~~l~~k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~~~i~~~l~~d 86 (372)
T PF12231_consen 7 RSSRLDAYMTLNNALKAYDNLPDRQALQDKMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYHPEIVSTLSDD 86 (372)
T ss_pred cHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHccHHHHhhCChH
Confidence 34455555555443322 22 24456666666666655433 2 6678888999999887432 1222223
Q ss_pred hhhhhHHHHHhhccCCC-ChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhh--cCchhHHHHHHHHHHHHHHH
Q 001442 419 FHPQVLPALAGAMDDFQ-NPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQ--NGKQMVQEGALTALASVADS 495 (1076)
Q Consensus 419 ~~~~ll~~l~~~l~~~~-~~~v~~~a~~aL~~l~~~~~~~~l~~~l~~ll~~l~~~l~--~~~~~v~~~al~ai~~l~~~ 495 (1076)
+...++...+..+.+.. ++.+.....++|.. ..++++.+.......+-..+..+. -++..+-...+.++-.+..-
T Consensus 87 ~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~--Q~f~~~~~~~~~~~~l~~~l~~i~~~~~s~si~~erL~i~~~ll~q 164 (372)
T PF12231_consen 87 FASFIIDHSIESLQNPNSPKSICTHYLWCLSD--QKFSPKIMTSDRVERLLAALHNIKNRFPSKSIISERLNIYKRLLSQ 164 (372)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc--CCCCCcccchhhHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHH
Confidence 44457777777886633 33444555555443 345555444333332222233333 24456777888999999988
Q ss_pred hHhhHHhhHhhhHHHHHHHHhccCCchhhhhHHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHhcCCCCCCChhhHHH
Q 001442 496 SQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYM 575 (1076)
Q Consensus 496 ~~~~~~~~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~g~~~~~~~~~~ii~~l~~~~~~~~~~~~~~~~~~ 575 (1076)
.+..+....+..+|.++..+-.. ...+|.+|+.+...+...+|++.. +...+....+......
T Consensus 165 ~p~~M~~~~~~W~~~l~~~l~~~----~k~ir~~a~~l~~~~~~~l~~~~~------~s~~~~~~~~~~~~~~------- 227 (372)
T PF12231_consen 165 FPQQMIKHADIWFPILFPDLLSS----AKDIRTKAISLLLEAKKCLGPNKE------LSKSVLEDLQRSLENG------- 227 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhc----chHHHHHHHHHHHHHHHHhChhHH------HHHHHHHHhccccccc-------
Confidence 88888777777777777665542 234677777777666677764322 1111112111111111
Q ss_pred HHHHHHHHHHhccCcccchhhhhHHHHHhccCCCCccccCCCCCccccCCCCcccchhhcCCceeeecchhHHHHHHHHH
Q 001442 576 LQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATACN 655 (1076)
Q Consensus 576 ~~~~~~l~~~~~~~~~~~l~~i~~~ll~~~~~~~~~~~~~~d~d~~~~~~d~~~~~~~~~~~~~~~v~~~~~~~k~~A~~ 655 (1076)
.|...+.+.+...+..+. + ...|.+
T Consensus 228 ----------------~~~~~~~~~L~~mi~~~~------------------~---------------------~~~a~~ 252 (372)
T PF12231_consen 228 ----------------KLIQLYCERLKEMIKSKD------------------E---------------------YKLAMQ 252 (372)
T ss_pred ----------------cHHHHHHHHHHHHHhCcC------------------C---------------------cchHHH
Confidence 112222222222221100 0 012333
Q ss_pred HHHHHHHHhhhc---ccccHHHHHHHhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Q 001442 656 MLCCYADELKEG---FFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIP 732 (1076)
Q Consensus 656 ~l~~i~~~~~~~---~~p~l~~~~~~l~~~l~~~~~~~vr~~a~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 732 (1076)
.++.+..-++.. --+|+.+.+.....+++.. ++.+|..|..+-..++.... .+....++.+..++.
T Consensus 253 iW~~~i~LL~~~~~~~w~~~n~wL~v~e~cFn~~-d~~~k~~A~~aW~~liy~~~----------~~~~~~~k~l~lL~~ 321 (372)
T PF12231_consen 253 IWSVVILLLGSSRLDSWEHLNEWLKVPEKCFNSS-DPQVKIQAFKAWRRLIYASN----------PNELTSPKRLKLLCQ 321 (372)
T ss_pred HHHHHHHHhCCchhhccHhHhHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHhc----------CCccccHHHHHHHHH
Confidence 344444433322 2345667777777777764 78999999999888887431 112223455666666
Q ss_pred HHHHHHccCCcH----HHHHHHHHHHHHHH
Q 001442 733 ALVEALHKEPDT----EICASMLDSLNECI 758 (1076)
Q Consensus 733 ~l~~~l~~~~~~----~~~~~~l~~l~~~i 758 (1076)
++...++.+... ++...++.++...+
T Consensus 322 Pl~~~l~~~~~~~~~~~~~~~ll~~l~~ll 351 (372)
T PF12231_consen 322 PLSSQLRREKSSKTKEEVWWYLLYSLCNLL 351 (372)
T ss_pred HHHHHhCccccccccHHHHHHHHHHHhchH
Confidence 666666665444 55555555555544
No 194
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=95.34 E-value=3.3 Score=46.55 Aligned_cols=215 Identities=12% Similarity=0.117 Sum_probs=116.7
Q ss_pred hhHHHHHHHHHHHcCCCc----chHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhcHH---HHHHhHHHHHHHHHhhCC
Q 001442 318 SVGQECLDRLAIALGGNT----IVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAK---VMVKNLEQVLSMVLNSFR 390 (1076)
Q Consensus 318 ~~a~~~l~~l~~~~~~~~----~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~---~~~~~l~~i~~~l~~~l~ 390 (1076)
....+.|-++....+.+. +-..++..+...+.++|++.|......|..+-....+ .+...+.. .+...+.
T Consensus 108 ~~vY~il~~~i~~~~~~~~~~~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~i~~---~~~~fi~ 184 (409)
T PF01603_consen 108 QLVYEILLRFIESPPFDPAKKYIDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKSINN---IFYRFIY 184 (409)
T ss_dssp HHHHHHHHHHHTSTT--CCTTTS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHHHHH---HHHHHHH
T ss_pred HHHHHHHHHHHHCccccHHHHHcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH---HHHHHhc
Confidence 456677777766543222 4455667777888999999999988888887654432 22222222 2222221
Q ss_pred -CCChhHHHHHHHHHHHhhhhhchhH--------------------HhhhhhhhHHHHHhhccCC---------------
Q 001442 391 -DPHPRVRWAAINAIGQLSTDLGPDL--------------------QNQFHPQVLPALAGAMDDF--------------- 434 (1076)
Q Consensus 391 -d~~~~vr~~a~~~l~~l~~~~~~~~--------------------~~~~~~~ll~~l~~~l~~~--------------- 434 (1076)
...+.--...+..+|.+...+...+ ...|++++...+...+...
T Consensus 185 e~~~~~gI~elLeil~sii~gf~~plk~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l~~~~i~~llk~W 264 (409)
T PF01603_consen 185 ETERHNGIAELLEILGSIINGFAVPLKEEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSLAEPVIKGLLKHW 264 (409)
T ss_dssp TTS--STHHHHHHHHHHHHTT--SS--HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGGHHHHHHHHHHHS
T ss_pred CcccccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHhC
Confidence 2233333445566666655443111 1233344443333333320
Q ss_pred --CChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCchhHHHHHHHHHHHH--HHHhHhhHHhhHhhhHHH
Q 001442 435 --QNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASV--ADSSQEHFQKYYDAVMPF 510 (1076)
Q Consensus 435 --~~~~v~~~a~~aL~~l~~~~~~~~l~~~l~~ll~~l~~~l~~~~~~v~~~al~ai~~l--~~~~~~~~~~~~~~i~~~ 510 (1076)
.++.-...-..-+..+++.+++..+......++..+..++++++..|-+.|+..+..- ... +..+-..++|.
T Consensus 265 P~t~s~Kev~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~n~~~~~l----i~~~~~~i~p~ 340 (409)
T PF01603_consen 265 PKTNSQKEVLFLNELEEILEVLPPEEFQKIMVPLFKRLAKCISSPHFQVAERALYFWNNEYFLSL----ISQNSRVILPI 340 (409)
T ss_dssp -SS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGGSHHHHHH----HHCTHHHHHHH
T ss_pred CCCCchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHCCHHHHHH----HHhChHHHHHH
Confidence 1111122333445555566665556667788888899999999999988888776542 222 23455667777
Q ss_pred HHHHHhcc-CCchhhhhHHHHHHHHHHHHH
Q 001442 511 LKAILVNA-TDKSNRMLRAKSMECISLVGM 539 (1076)
Q Consensus 511 L~~~l~~~-~~~~~~~lr~~a~~~l~~i~~ 539 (1076)
+...+... ...-+..+|..+..++..+..
T Consensus 341 i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~~ 370 (409)
T PF01603_consen 341 IFPALYRNSKNHWNQTVRNLAQNVLKILME 370 (409)
T ss_dssp HHHHHSSTTSS-SSTTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 77776542 223345677777777766653
No 195
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=95.28 E-value=0.18 Score=60.75 Aligned_cols=172 Identities=19% Similarity=0.180 Sum_probs=111.6
Q ss_pred hhhHHHHHHHHHHHcCCC--cchHHHHHHHHHhhc----CCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCC
Q 001442 317 YSVGQECLDRLAIALGGN--TIVPVASEQLPAYLA----APEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFR 390 (1076)
Q Consensus 317 ~~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~----~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~ 390 (1076)
++-|...|..+++.+|+. .-+|.+...+...++ +.+ .--..+..+..+.......+.+ +-+.++.+.....
T Consensus 750 rrgael~L~~l~~~fg~sl~~klp~l~~~L~~~L~~~~~~~d--~~~~s~~vf~s~~~~m~s~l~~-~~~~l~~l~~~~~ 826 (1549)
T KOG0392|consen 750 RRGAELFLKILSKMFGGSLAAKLPHLWDFLLKALSGLIDGND--EFLSSFEVFNSLAPLMHSFLHP-LGSLLPRLFFFVR 826 (1549)
T ss_pred hhhHHHHHHHHHHHhhHHHHHhcchHHHHHHHhhhccCCCCc--chhhhHHHHHHHHHhhhhhhhh-hhhhhhHHHHhcc
Confidence 345677888888888842 123444444443333 222 1111122222222222233334 5567788888999
Q ss_pred CCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCChhHH-HHHHHHHHHhhhcCCcccccCchHHHHHH
Q 001442 391 DPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQ-AHAASAVLNFSENCTPEILTPYLDGIVSK 469 (1076)
Q Consensus 391 d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~v~-~~a~~aL~~l~~~~~~~~l~~~l~~ll~~ 469 (1076)
..++.+|.+|+.|++.+...... +.+..++..++..+.+ .+.-++ ..|-..+..++.... ..+.||.+-+++.
T Consensus 827 s~~~a~r~~~ar~i~~~~k~~~~----e~m~~v~~~~~~ll~~-~~~~~~r~~a~e~~~~l~~~l~-~~l~~~~~Llv~p 900 (1549)
T KOG0392|consen 827 SIHIAVRYAAARCIGTMFKSATR----ETMATVINGFLPLLGD-LDKFVRRQGADELIELLDAVLM-VGLVPYNPLLVVP 900 (1549)
T ss_pred cchHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhhhccc-hhhHhhhhhHHHHHHHHHHhhc-ccccccceeehhh
Confidence 99999999999999999876544 3344555666666666 333343 445555555555544 4478999999999
Q ss_pred HHHHhhcCchhHHHHHHHHHHHHHHHhH
Q 001442 470 LLVLLQNGKQMVQEGALTALASVADSSQ 497 (1076)
Q Consensus 470 l~~~l~~~~~~v~~~al~ai~~l~~~~~ 497 (1076)
|+..+.+....+|..+-.+++.++...+
T Consensus 901 llr~msd~~d~vR~aat~~fa~lip~~~ 928 (1549)
T KOG0392|consen 901 LLRRMSDQIDSVREAATKVFAKLIPLLP 928 (1549)
T ss_pred hhcccccchHHHHHHHHHHHHHHhcccc
Confidence 9999999999999999999999987654
No 196
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.19 E-value=7.9 Score=44.56 Aligned_cols=108 Identities=19% Similarity=0.177 Sum_probs=81.0
Q ss_pred cchHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchh
Q 001442 335 TIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPD 414 (1076)
Q Consensus 335 ~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~ 414 (1076)
.++..++.++.....+++-++|.-.+..++.+.......-...+..+...+...+.|..|.||..|..+|+++-..-.
T Consensus 81 DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~-- 158 (892)
T KOG2025|consen 81 DLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPK-- 158 (892)
T ss_pred hHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCC--
Confidence 355556666667777889999999999999988754433334567788888999999999999999999999864321
Q ss_pred HHhhhhhhhHHHHHhhccCCCChhHHHHHHHHH
Q 001442 415 LQNQFHPQVLPALAGAMDDFQNPRVQAHAASAV 447 (1076)
Q Consensus 415 ~~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~aL 447 (1076)
+---.+.+.+...+++.|++.||.+|...+
T Consensus 159 ---dee~~v~n~l~~liqnDpS~EVRRaaLsnI 188 (892)
T KOG2025|consen 159 ---DEECPVVNLLKDLIQNDPSDEVRRAALSNI 188 (892)
T ss_pred ---CCcccHHHHHHHHHhcCCcHHHHHHHHHhh
Confidence 112256777777777669999999876543
No 197
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.15 E-value=0.22 Score=56.37 Aligned_cols=108 Identities=18% Similarity=0.265 Sum_probs=84.6
Q ss_pred hHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCc
Q 001442 377 NLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTP 456 (1076)
Q Consensus 377 ~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~aL~~l~~~~~~ 456 (1076)
.+..++..++++...++..||..+|..+..+..... .+.+..++.+...+...+.| ..|.||..|..+|..+-+.-..
T Consensus 82 lV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~-eidd~vfn~l~e~l~~Rl~D-rep~VRiqAv~aLsrlQ~d~~d 159 (892)
T KOG2025|consen 82 LVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENA-EIDDDVFNKLNEKLLIRLKD-REPNVRIQAVLALSRLQGDPKD 159 (892)
T ss_pred HHHHHHHHHHhcccCcchhHHHHHHHHHHHHhcccc-ccCHHHHHHHHHHHHHHHhc-cCchHHHHHHHHHHHHhcCCCC
Confidence 566788899999999999999999999999987432 33356788899999999999 8999999999999999754332
Q ss_pred ccccCchHHHHHHHHHHhh-cCchhHHHHHHHHHHH
Q 001442 457 EILTPYLDGIVSKLLVLLQ-NGKQMVQEGALTALAS 491 (1076)
Q Consensus 457 ~~l~~~l~~ll~~l~~~l~-~~~~~v~~~al~ai~~ 491 (1076)
+.. .++..+..+++ +++++||+.++.+|..
T Consensus 160 ee~-----~v~n~l~~liqnDpS~EVRRaaLsnI~v 190 (892)
T KOG2025|consen 160 EEC-----PVVNLLKDLIQNDPSDEVRRAALSNISV 190 (892)
T ss_pred Ccc-----cHHHHHHHHHhcCCcHHHHHHHHHhhcc
Confidence 221 34555555554 6788999999988853
No 198
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=95.03 E-value=0.74 Score=48.80 Aligned_cols=159 Identities=13% Similarity=0.136 Sum_probs=106.0
Q ss_pred HHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCccc---ccC--chHHHHHHHHHH
Q 001442 399 AAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEI---LTP--YLDGIVSKLLVL 473 (1076)
Q Consensus 399 ~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~aL~~l~~~~~~~~---l~~--~l~~ll~~l~~~ 473 (1076)
.-.|++..-. -.+.+ .++++-++|.++..++| .++.++..+|.+|..|++.++... +.. +.+-+-+.+..+
T Consensus 99 ~l~w~v~~~~--~~~~i-~~~~~liiP~iL~llDD-~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~ 174 (282)
T PF10521_consen 99 VLSWIVLSQL--DRPWI-SQHWPLIIPPILNLLDD-YSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPC 174 (282)
T ss_pred HHHHHHHhcC--CcchH-HHhhhHHHhhHHHHhcC-CCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHH
Confidence 3456665111 12344 68999999999999999 899999999999999999887654 322 234444555555
Q ss_pred hh--------cCchhHHHHHHHHHHHHHHHhHh-----hHHhhHhhhHHHHHHHHhccCCchhhhhHHHHHHHHHHHHHH
Q 001442 474 LQ--------NGKQMVQEGALTALASVADSSQE-----HFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMA 540 (1076)
Q Consensus 474 l~--------~~~~~v~~~al~ai~~l~~~~~~-----~~~~~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~i~~~ 540 (1076)
+. +....+-..++.|+-.++..... ....+...+-..+...+....+-....++...++.+..+...
T Consensus 175 L~~LP~~tp~~~s~~Ll~~ay~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~ 254 (282)
T PF10521_consen 175 LYYLPPITPEDESLELLQAAYPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDE 254 (282)
T ss_pred hhcCCCCCCchhhHHHHHHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHH
Confidence 54 44566788899999998876421 111222223333444433322222456778888999999999
Q ss_pred hchhhhhhhHHHHHHHHHHHhc
Q 001442 541 VGKDKFRDDAKQVMEVLMSLQG 562 (1076)
Q Consensus 541 ~g~~~~~~~~~~ii~~l~~~~~ 562 (1076)
+| -....|++.++..+.+...
T Consensus 255 lG-i~~~~hL~rii~~l~~~l~ 275 (282)
T PF10521_consen 255 LG-ISSVKHLQRIIPVLSQILE 275 (282)
T ss_pred hc-cHHHHHHHHHHHHHHHHhc
Confidence 99 4678899999888877443
No 199
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=94.94 E-value=1.2 Score=44.98 Aligned_cols=150 Identities=13% Similarity=0.177 Sum_probs=83.9
Q ss_pred HHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCC-----CChhHHHHHHHHHHH
Q 001442 375 VKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDF-----QNPRVQAHAASAVLN 449 (1076)
Q Consensus 375 ~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~-----~~~~v~~~a~~aL~~ 449 (1076)
.-|++.++..+ +...+...|.+|+.++.. +.-+++++|.++..+.+. ++..+-.........
T Consensus 196 q~YF~kvisal---~dEs~~~~r~aAl~sLr~----------dsGlhQLvPYFi~f~~eqit~Nl~nl~~LtTv~~m~~s 262 (450)
T COG5095 196 QMYFDKVISAL---LDESDEQTRDAALESLRN----------DSGLHQLVPYFIHFFNEQITKNLKNLEKLTTVVMMYSS 262 (450)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHhcc----------CccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 34555555554 345577889999887654 123445555555555441 112222222222333
Q ss_pred hhhcCCcccccCchHHHHHHHHHHhhc-----Cc-----hhHHHHHHHHHHHHHHHhHhhHHhhHhhhHHHHHHHHhccC
Q 001442 450 FSENCTPEILTPYLDGIVSKLLVLLQN-----GK-----QMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNAT 519 (1076)
Q Consensus 450 l~~~~~~~~l~~~l~~ll~~l~~~l~~-----~~-----~~v~~~al~ai~~l~~~~~~~~~~~~~~i~~~L~~~l~~~~ 519 (1076)
+.++-. -++.||+.++||.++.++-. .+ ..+|..|...++.+....+......-+++...+...|-+.+
T Consensus 263 LL~N~~-iFvdPY~hqlmPSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~~YktLkPRvtrTllKafLD~~ 341 (450)
T COG5095 263 LLKNKY-IFVDPYLHQLMPSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSSSYKTLKPRVTRTLLKAFLDRE 341 (450)
T ss_pred HhcCCc-eeecHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhHhhhhhchHHHHHHHHHHHhcc
Confidence 344332 24689999999999887632 11 24788888888888777766544444555555555554432
Q ss_pred CchhhhhHHHHHHHHHHHHHH
Q 001442 520 DKSNRMLRAKSMECISLVGMA 540 (1076)
Q Consensus 520 ~~~~~~lr~~a~~~l~~i~~~ 540 (1076)
... ...-.|+.|++.++..
T Consensus 342 k~~--sT~YGalkgls~l~ke 360 (450)
T COG5095 342 KTE--STQYGALKGLSILSKE 360 (450)
T ss_pred ccc--chhhhhhhhhhhhchh
Confidence 221 2233567777777643
No 200
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=94.89 E-value=3.9 Score=44.15 Aligned_cols=100 Identities=12% Similarity=0.200 Sum_probs=73.8
Q ss_pred ChhHHHHHHHHHHHHHhhcHHHHH----HhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhch-------hHHhhhh
Q 001442 352 EWQKHHAALIALAQIAEGCAKVMV----KNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGP-------DLQNQFH 420 (1076)
Q Consensus 352 ~~~~r~aal~~l~~l~~~~~~~~~----~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~-------~~~~~~~ 420 (1076)
-+..|..-...|..+.+.|...+. ..+..++..+..++++++..|...++.++..+.+.+.. .+-..|+
T Consensus 133 yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~~~~~~~~~F~~~y~ 212 (319)
T PF08767_consen 133 YPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSKTNPEFANQFYQQYY 212 (319)
T ss_dssp SHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH-SHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 478999999999999998876443 45788999999999999999999999999999887654 2334456
Q ss_pred hhhHHHHHhhccCCCChhHHHHHHHHHHHhh
Q 001442 421 PQVLPALAGAMDDFQNPRVQAHAASAVLNFS 451 (1076)
Q Consensus 421 ~~ll~~l~~~l~~~~~~~v~~~a~~aL~~l~ 451 (1076)
-.++..++..+.|..+...-..-+..|..++
T Consensus 213 ~~il~~if~vltD~~Hk~gf~~q~~iL~~Lf 243 (319)
T PF08767_consen 213 LDILQDIFSVLTDSDHKSGFKLQSQILSNLF 243 (319)
T ss_dssp HHHHHHHHHHHHSTT-GGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCcccHHHHHHHHHHHHHHH
Confidence 6677777777777434433344445555555
No 201
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=94.74 E-value=2.5 Score=42.81 Aligned_cols=152 Identities=16% Similarity=0.167 Sum_probs=95.0
Q ss_pred HHHHHHHccCCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcCCCCChHhhhhhhhh
Q 001442 732 PALVEALHKEPDTEICASMLDSLNECIQISGPLLDEGQVRSIVDEIKQVITASSSRKRERAERAKAEDFDAEESELIKEE 811 (1076)
Q Consensus 732 ~~l~~~l~~~~~~~~~~~~l~~l~~~i~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ed~d~~~~~~~~e~ 811 (1076)
.+.+.++-+|.+.+.+.+++.++.. ...+..+++-++..+.+...+.-
T Consensus 200 ~kvisal~dEs~~~~r~aAl~sLr~----------dsGlhQLvPYFi~f~~eqit~Nl---------------------- 247 (450)
T COG5095 200 DKVISALLDESDEQTRDAALESLRN----------DSGLHQLVPYFIHFFNEQITKNL---------------------- 247 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc----------CccHHHHHHHHHHHHHHHHHHhh----------------------
Confidence 3444455556677777777766542 12344445555544444321100
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHhHhhhhcC----CCCH-----HHHHHHHHHHHHHHHHhhhhhHhh
Q 001442 812 NEQEEEVFDQVGEILGTLIKTFKAAFLPFFDELSSYLTPMWGK----DKTA-----EERRIAICIFDDVAEQCREAALKY 882 (1076)
Q Consensus 812 ~e~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~----~~~~-----~~r~~al~~l~~l~~~~~~~~~~~ 882 (1076)
.+..++..+..+...+.+.-.-..-||+.+++|.++.++-. +.+. ..|..|..+++.++..++..+...
T Consensus 248 --~nl~~LtTv~~m~~sLL~N~~iFvdPY~hqlmPSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~~YktL 325 (450)
T COG5095 248 --KNLEKLTTVVMMYSSLLKNKYIFVDPYLHQLMPSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSSSYKTL 325 (450)
T ss_pred --hhHHHHHHHHHHHHHHhcCCceeecHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhHhhhhh
Confidence 01234455566666666543333459999999988775421 2222 268889999999999999988888
Q ss_pred HHhHHHHHHhhccCC--ChhHHhhhhHHHHHHHhhcC
Q 001442 883 YETYLPFLLEACNDE--NQDVRQAAVYGLGVCAEFGG 917 (1076)
Q Consensus 883 ~~~ll~~l~~~l~~~--~~~vr~~a~~~lg~l~~~~~ 917 (1076)
.+.+...+++.+-|. -....-.|.+|+..+....-
T Consensus 326 kPRvtrTllKafLD~~k~~sT~YGalkgls~l~ke~i 362 (450)
T COG5095 326 KPRVTRTLLKAFLDREKTESTQYGALKGLSILSKEVI 362 (450)
T ss_pred chHHHHHHHHHHHhcccccchhhhhhhhhhhhchhhe
Confidence 888888888887664 34566778888888876543
No 202
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=94.68 E-value=0.87 Score=52.36 Aligned_cols=127 Identities=16% Similarity=0.268 Sum_probs=81.6
Q ss_pred HHHHHHHHHhhCCCC-ChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCc
Q 001442 378 LEQVLSMVLNSFRDP-HPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTP 456 (1076)
Q Consensus 378 l~~i~~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~aL~~l~~~~~~ 456 (1076)
-..++|.|.+.++-+ +..++-..+.=+..+.+...+ +...+.++|.|...+++ .+..+|..+...+..+.+.++.
T Consensus 347 ~~~~~p~l~pi~~~~~~~~~~l~i~e~mdlL~~Kt~~---e~~~~~IlplL~~S~~~-~~~~iQ~~~L~~lptv~e~iD~ 422 (700)
T KOG2137|consen 347 GPKMLPALKPIYSASDPKQALLFILENMDLLKEKTPP---EEVKEKILPLLYRSLED-SDVQIQELALQILPTVAESIDV 422 (700)
T ss_pred hhhhhHHHHHHhccCCcccchhhHHhhHHHHHhhCCh---HHHHHHHHHHHHHHhcC-cchhhHHHHHHhhhHHHHhccH
Confidence 344555655555422 223332222333333444443 45788999999999999 8899999999999999988863
Q ss_pred ccccCchHHHHHHHHH-HhhcCchhHHHHHHHHHHHHHHHhHhhHHhhHhhhHHHHHH
Q 001442 457 EILTPYLDGIVSKLLV-LLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKA 513 (1076)
Q Consensus 457 ~~l~~~l~~ll~~l~~-~l~~~~~~v~~~al~ai~~l~~~~~~~~~~~~~~i~~~L~~ 513 (1076)
..+ -..|+|.+.. .+.+.+..++..++.|++.+++.+... .-++.+.|.+..
T Consensus 423 ~~v---k~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~lD~~--~v~d~~lpi~~~ 475 (700)
T KOG2137|consen 423 PFV---KQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRLDKA--AVLDELLPILKC 475 (700)
T ss_pred HHH---HHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHHHHH--HhHHHHHHHHHH
Confidence 322 3456666655 456677889999999999999665432 133444444443
No 203
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=94.68 E-value=0.34 Score=46.05 Aligned_cols=146 Identities=15% Similarity=0.286 Sum_probs=84.5
Q ss_pred HHHHHHHHHhhCCC-CChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCc
Q 001442 378 LEQVLSMVLNSFRD-PHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTP 456 (1076)
Q Consensus 378 l~~i~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~aL~~l~~~~~~ 456 (1076)
.+++++.+++.++. .++.+|..+.+++|.+.- +-| |.... ......+ .........+.....+.....+
T Consensus 8 yP~LL~~L~~iLk~e~s~~iR~E~lr~lGilGA-LDP-----~~~k~---~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~ 77 (160)
T PF11865_consen 8 YPELLDILLNILKTEQSQSIRREALRVLGILGA-LDP-----YKHKS---IQKSLDS-KSSENSNDESTDISLPMMGISP 77 (160)
T ss_pred hHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccc-cCc-----HHHhc---ccccCCc-cccccccccchhhHHhhccCCC
Confidence 35677777777753 468999999999999863 222 22111 1111111 0000000001111112122211
Q ss_pred ccccCc-hHHHHHHHHHHhhcCch-hHHHHHHHHHHHHHHHhHhhHHhhHhhhHHHHHHHHhccCCchhhhhHHHHHHHH
Q 001442 457 EILTPY-LDGIVSKLLVLLQNGKQ-MVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECI 534 (1076)
Q Consensus 457 ~~l~~~-l~~ll~~l~~~l~~~~~-~v~~~al~ai~~l~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l 534 (1076)
. ...| ....+..|+..++++.. .-...++.++-.+....|....+|++.++|.+...+.+..+ .+|...+.-+
T Consensus 78 ~-~ee~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~----~~~e~~~~qL 152 (160)
T PF11865_consen 78 S-SEEYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPD----SLREFYFQQL 152 (160)
T ss_pred c-hHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCH----HHHHHHHHHH
Confidence 1 2233 44567889999988763 44557889988888888888899999999999999886432 3455555555
Q ss_pred HHHH
Q 001442 535 SLVG 538 (1076)
Q Consensus 535 ~~i~ 538 (1076)
+.+.
T Consensus 153 ~~lv 156 (160)
T PF11865_consen 153 ADLV 156 (160)
T ss_pred HHHH
Confidence 5444
No 204
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=94.59 E-value=0.25 Score=54.17 Aligned_cols=115 Identities=23% Similarity=0.241 Sum_probs=85.3
Q ss_pred hhcCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhC-CCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHH
Q 001442 347 YLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSF-RDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLP 425 (1076)
Q Consensus 347 ~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l-~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~ 425 (1076)
.+++.+-.+|+||+.+||.++-.-.+ .++..++.| .+-|+.||.....+||-.|...+... .+.
T Consensus 560 avsD~nDDVrRAAViAlGfvc~~D~~--------~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~~-------a~d 624 (926)
T COG5116 560 AVSDGNDDVRRAAVIALGFVCCDDRD--------LLVGTVELLSESHNFHVRAGVAVALGIACAGTGDKV-------ATD 624 (926)
T ss_pred ecccCchHHHHHHHHheeeeEecCcc--------hhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccHH-------HHH
Confidence 35677889999999999987533222 333334444 45689999999999999887665432 223
Q ss_pred HHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCc
Q 001442 426 ALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGK 478 (1076)
Q Consensus 426 ~l~~~l~~~~~~~v~~~a~~aL~~l~~~~~~~~l~~~l~~ll~~l~~~l~~~~ 478 (1076)
.|-....| ++.-||.+||.+++.+.-.+.++ +.|-...+...+.+.+.+.+
T Consensus 625 iL~~L~~D-~~dfVRQ~AmIa~~mIl~Q~n~~-Lnp~v~~I~k~f~~vI~~Kh 675 (926)
T COG5116 625 ILEALMYD-TNDFVRQSAMIAVGMILMQCNPE-LNPNVKRIIKKFNRVIVDKH 675 (926)
T ss_pred HHHHHhhC-cHHHHHHHHHHHHHHHHhhcCcc-cChhHHHHHHHHHHHHhhhh
Confidence 33344456 78899999999999999998876 78889999999988887765
No 205
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.44 E-value=0.65 Score=48.86 Aligned_cols=108 Identities=15% Similarity=0.140 Sum_probs=79.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhhhhhHhhHHhHHHHHHhhccCCChhHHhhhhHHHHHHHhhcCCCchHHH-HHHHHHHH
Q 001442 854 KDKTAEERRIAICIFDDVAEQCREAALKYYETYLPFLLEACNDENQDVRQAAVYGLGVCAEFGGSVVKPLV-GEALSRLN 932 (1076)
Q Consensus 854 ~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~vr~~a~~~lg~l~~~~~~~~~~~~-~~il~~L~ 932 (1076)
.+.+.+.+..++.-|.++++.+.....=.-...+..++..+++.++.+|..|++.+|.++++.+..-...+ ...++.|.
T Consensus 93 ~s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll 172 (342)
T KOG2160|consen 93 SSVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLL 172 (342)
T ss_pred ccCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHH
Confidence 34567788889999999998887653323334455666699999999999999999999999874211111 12677777
Q ss_pred HhhcCCCCCChhhhhHHHHHHHHHHHHHhhcCCC
Q 001442 933 VVIRHPNALQPENLMAYDNAVSALGKICQFHRDS 966 (1076)
Q Consensus 933 ~~l~~~~~~~~~~~~~~~na~~al~~i~~~~~~~ 966 (1076)
.+++.. +...+|-.|..|++.++++++..
T Consensus 173 ~~ls~~-----~~~~~r~kaL~AissLIRn~~~g 201 (342)
T KOG2160|consen 173 KILSSD-----DPNTVRTKALFAISSLIRNNKPG 201 (342)
T ss_pred HHHccC-----CCchHHHHHHHHHHHHHhcCcHH
Confidence 777643 24578899999999999988653
No 206
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=94.33 E-value=2.5 Score=47.54 Aligned_cols=231 Identities=11% Similarity=0.102 Sum_probs=135.5
Q ss_pred CChHHHHHHHHHhcCCChHHHHHHHHHHHHhhhcCchHH---HHHHHHHH----ccCCCHHHHHHHHHHHHHhcccCCCC
Q 001442 19 PDSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSL---TLKLAHLL----QRSPHPEARAMAAVLLRKLLTRDDSF 91 (1076)
Q Consensus 19 ~~~~~l~~lL~~~~s~d~~~r~~Ae~~L~~~~~~~p~~~---~~~L~~il----~~~~~~~~R~~a~v~Lk~~i~~~~~~ 91 (1076)
.|..-+.+++..+.|+|+..|......|..+..+.++.. ...+..++ -.+....-=.-..-++...++..
T Consensus 130 i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf--- 206 (409)
T PF01603_consen 130 IDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKSINNIFYRFIYETERHNGIAELLEILGSIINGF--- 206 (409)
T ss_dssp S-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHHHHHTTS--STHHHHHHHHHHHHTT----
T ss_pred cCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHhcc---
Confidence 355677888888999999999999999988665444221 11122222 22222222222333445555432
Q ss_pred cccCCCHhHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhcccCCCCcchhHHHHHHhhcCCCHHHHHHHHHHHHHHH
Q 001442 92 LWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLI 171 (1076)
Q Consensus 92 ~w~~l~~~~~~~lk~~Ll~~l~~~~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~~~~~~~r~~al~~L~~l~ 171 (1076)
=..+.++.+..+++.|+-......-......+..++..+...+.. --..++..++..---.+..-.-.-+.-+..+
T Consensus 207 -~~plk~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~--l~~~~i~~llk~WP~t~s~Kev~FL~el~~i- 282 (409)
T PF01603_consen 207 -AVPLKEEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPS--LAEPVIKGLLKHWPKTNSQKEVLFLNELEEI- 282 (409)
T ss_dssp --SS--HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GG--GHHHHHHHHHHHS-SS-HHHHHHHHHHHHHH-
T ss_pred -CCCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCch--hHHHHHHHHHHhCCCCCchhHHHHHHHHHHH-
Confidence 125678888888888888777555566678888888888876522 2233444444443334433333333333333
Q ss_pred HHHHHhhCCcchHhHHhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccCcHHHHHhHHHHHHHHHHHhcC---CCc
Q 001442 172 INFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEA---ESL 248 (1076)
Q Consensus 172 ~~~~~~l~~~~~~~~~~~l~p~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~l~~~~~~---~~~ 248 (1076)
+..+. ...|..+...+.+.+..++++++..+++.|+..+..- ..-..+..+-..+++.+...+.. ..=
T Consensus 283 ---l~~~~----~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~n~--~~~~li~~~~~~i~p~i~~~L~~~~~~HW 353 (409)
T PF01603_consen 283 ---LEVLP----PEEFQKIMVPLFKRLAKCISSPHFQVAERALYFWNNE--YFLSLISQNSRVILPIIFPALYRNSKNHW 353 (409)
T ss_dssp ---HTT------HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGGSH--HHHHHHHCTHHHHHHHHHHHHSSTTSS-S
T ss_pred ---HHhcC----HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHCCH--HHHHHHHhChHHHHHHHHHHHHHHHHHHh
Confidence 33332 5677888899999999999999999999999876531 11123334445555555554322 123
Q ss_pred chhHHHHHHHHHHHHHH
Q 001442 249 EEGTRHLAIEFVITLAE 265 (1076)
Q Consensus 249 ~~~~r~~al~~l~~l~~ 265 (1076)
+..+|..|..++..+.+
T Consensus 354 n~~Vr~~a~~vl~~l~~ 370 (409)
T PF01603_consen 354 NQTVRNLAQNVLKILME 370 (409)
T ss_dssp STTHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 56789999988888877
No 207
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=94.30 E-value=4.1 Score=41.02 Aligned_cols=89 Identities=18% Similarity=0.294 Sum_probs=51.8
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCC--CCChhHHHHHHHHHHHhhhhhchhHHhh
Q 001442 341 SEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFR--DPHPRVRWAAINAIGQLSTDLGPDLQNQ 418 (1076)
Q Consensus 341 ~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~--d~~~~vr~~a~~~l~~l~~~~~~~~~~~ 418 (1076)
+..+.+...+..-.-++.+.++||++.. ..-++.+...+. +..|.||.-|..+||.+..
T Consensus 38 i~~i~ka~~d~s~llkhe~ay~LgQ~~~----------~~Av~~l~~vl~desq~pmvRhEAaealga~~~--------- 98 (289)
T KOG0567|consen 38 IKAITKAFIDDSALLKHELAYVLGQMQD----------EDAVPVLVEVLLDESQEPMVRHEAAEALGAIGD--------- 98 (289)
T ss_pred HHHHHHhcccchhhhccchhhhhhhhcc----------chhhHHHHHHhcccccchHHHHHHHHHHHhhcc---------
Confidence 3444444444344445555666665432 123455555554 4568888888888888651
Q ss_pred hhhhhHHHHHhhccCCCChhHHHHHHHHHHHhh
Q 001442 419 FHPQVLPALAGAMDDFQNPRVQAHAASAVLNFS 451 (1076)
Q Consensus 419 ~~~~ll~~l~~~l~~~~~~~v~~~a~~aL~~l~ 451 (1076)
+.+++.+-+..+| +...|++.+..|+.++-
T Consensus 99 --~~~~~~l~k~~~d-p~~~v~ETc~lAi~rle 128 (289)
T KOG0567|consen 99 --PESLEILTKYIKD-PCKEVRETCELAIKRLE 128 (289)
T ss_pred --hhhHHHHHHHhcC-CccccchHHHHHHHHHH
Confidence 2344445555566 77778777777777664
No 208
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=94.17 E-value=2.1 Score=49.44 Aligned_cols=133 Identities=14% Similarity=0.193 Sum_probs=90.3
Q ss_pred hHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCc
Q 001442 377 NLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTP 456 (1076)
Q Consensus 377 ~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~aL~~l~~~~~~ 456 (1076)
....|+|.|...++|.+..++..++..+..+++.+... -.-+.++|.+.+..-...+..|+..+..|++.+++.++.
T Consensus 386 ~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~---~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~lD~ 462 (700)
T KOG2137|consen 386 VKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVP---FVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRLDK 462 (700)
T ss_pred HHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHH---HHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHHHH
Confidence 45679999999999999999999999999999877532 245567887776533336788999999999999977653
Q ss_pred ccccCchHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHhHhhHHhhHhhhHHHHHHHHh
Q 001442 457 EILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILV 516 (1076)
Q Consensus 457 ~~l~~~l~~ll~~l~~~l~~~~~~v~~~al~ai~~l~~~~~~~~~~~~~~i~~~L~~~l~ 516 (1076)
-. .+ +.+..+....+..++.+....+.....++........-....++|.+..+..
T Consensus 463 ~~---v~-d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls~ 518 (700)
T KOG2137|consen 463 AA---VL-DELLPILKCIKTRDPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLSV 518 (700)
T ss_pred HH---hH-HHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhhh
Confidence 21 22 3344555666666777766666666555543332111133566776666543
No 209
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=93.89 E-value=4.8 Score=46.42 Aligned_cols=188 Identities=14% Similarity=0.181 Sum_probs=117.7
Q ss_pred cchHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchh
Q 001442 335 TIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPD 414 (1076)
Q Consensus 335 ~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~ 414 (1076)
.+-..++|.+.+++.+.|-..|---+.-+-..++...+. ..-++|+|.+..++.|.++.+|..++.++..++..++..
T Consensus 326 eyq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt~~--~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~ 403 (690)
T KOG1243|consen 326 EYQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLTKQ--ILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKR 403 (690)
T ss_pred ccccchhhhHHHHhcCcchHHHHHHHHhHHHHhhhcCHH--hhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchh
Confidence 344446677777888888888876666666555555431 234578999999999999999999999999999887663
Q ss_pred HHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCchhHHHHHHHHHHHHHH
Q 001442 415 LQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVAD 494 (1076)
Q Consensus 415 ~~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~aL~~l~~~~~~~~l~~~l~~ll~~l~~~l~~~~~~v~~~al~ai~~l~~ 494 (1076)
..-..++..+-..-.| ....+|.....+|+.+.....+..-. ..+...+...+.++-...|..++.++.....
T Consensus 404 ---~Ln~Ellr~~ar~q~d-~~~~irtntticlgki~~~l~~~~R~---~vL~~aftralkdpf~paR~a~v~~l~at~~ 476 (690)
T KOG1243|consen 404 ---NLNGELLRYLARLQPD-EHGGIRTNTTICLGKIAPHLAASVRK---RVLASAFTRALKDPFVPARKAGVLALAATQE 476 (690)
T ss_pred ---hhcHHHHHHHHhhCcc-ccCcccccceeeecccccccchhhhc---cccchhhhhhhcCCCCCchhhhhHHHhhccc
Confidence 2334566665555555 67777877777777766554332111 1233444556777777778877777766554
Q ss_pred HhHhhHHhhHhhhHHHHHHHHhccCCchhhhhHHHHHHHHHHH
Q 001442 495 SSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLV 537 (1076)
Q Consensus 495 ~~~~~~~~~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~i 537 (1076)
.... ..-...|+|.+.....+ ....+|..+..++...
T Consensus 477 ~~~~--~~va~kIlp~l~pl~vd----~e~~vr~~a~~~i~~f 513 (690)
T KOG1243|consen 477 YFDQ--SEVANKILPSLVPLTVD----PEKTVRDTAEKAIRQF 513 (690)
T ss_pred ccch--hhhhhhccccccccccC----cccchhhHHHHHHHHH
Confidence 3322 12234455555443322 2344566665555443
No 210
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=93.88 E-value=0.58 Score=39.38 Aligned_cols=84 Identities=24% Similarity=0.313 Sum_probs=66.9
Q ss_pred hHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHhHhhHHh
Q 001442 423 VLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQK 502 (1076)
Q Consensus 423 ll~~l~~~l~~~~~~~v~~~a~~aL~~l~~~~~~~~l~~~l~~ll~~l~~~l~~~~~~v~~~al~ai~~l~~~~~~~~~~ 502 (1076)
.+...+..+.| +.+.+|..+..-|..+++.-. . .....+.++..+...++++++.|--+|+.+++.++...++.
T Consensus 4 ~~~~al~~L~d-p~~PvRa~gL~~L~~Li~~~~-~-~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~--- 77 (92)
T PF10363_consen 4 TLQEALSDLND-PLPPVRAHGLVLLRKLIESKS-E-PVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDE--- 77 (92)
T ss_pred HHHHHHHHccC-CCcchHHHHHHHHHHHHHcCC-c-chhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHH---
Confidence 34556777888 889999999999999998766 1 23457889999999999999999999999999999976653
Q ss_pred hHhhhHHHHHHHHh
Q 001442 503 YYDAVMPFLKAILV 516 (1076)
Q Consensus 503 ~~~~i~~~L~~~l~ 516 (1076)
+++.|.+.+.
T Consensus 78 ----vl~~L~~~y~ 87 (92)
T PF10363_consen 78 ----VLPILLDEYA 87 (92)
T ss_pred ----HHHHHHHHHh
Confidence 4555555544
No 211
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=93.86 E-value=13 Score=41.30 Aligned_cols=267 Identities=12% Similarity=0.080 Sum_probs=144.9
Q ss_pred HHHhHHHHHHHHHHHhcC----CC-cchhHHHHHHHHHHHHHHhhcccchhhccchh-hHHHHHHHHHHhhcCCCCCccc
Q 001442 228 LRRQLVDVVGSMLQIAEA----ES-LEEGTRHLAIEFVITLAEARERAPGMMRKLPQ-FINRLFAILMSMLLDIEDDPLW 301 (1076)
Q Consensus 228 ~~~~l~~l~~~l~~~~~~----~~-~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~-~~~~l~~~l~~~l~~~~dd~~~ 301 (1076)
+..++..+++++-.-... .+ .+.++..+|+.++..+.. .|.+...++. +..-++...+..+....
T Consensus 33 l~~k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~----~~~i~~~l~~d~~~~~i~~~i~~l~~~~----- 103 (372)
T PF12231_consen 33 LQDKMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLY----HPEIVSTLSDDFASFIIDHSIESLQNPN----- 103 (372)
T ss_pred HHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHc----cHHHHhhCChHHHHHHHHHHHHHHcCCC-----
Confidence 344555555554443321 12 367788999999999987 3444333322 33345666666554321
Q ss_pred cCCCCCCcccCCCCchhhHHHHHHHHHH-HcCCCcc----hHHHHHHHHHhhc-CCChhHHHHHHHHHHHHHhhcHHHHH
Q 001442 302 HSAETEDEDAGESSNYSVGQECLDRLAI-ALGGNTI----VPVASEQLPAYLA-APEWQKHHAALIALAQIAEGCAKVMV 375 (1076)
Q Consensus 302 ~~~~~e~~d~~e~~~~~~a~~~l~~l~~-~~~~~~~----~~~l~~~l~~~l~-~~~~~~r~aal~~l~~l~~~~~~~~~ 375 (1076)
.+...+...+--++. .++++.+ ...++..+...-+ -+.-..-...+.++..+....+..|.
T Consensus 104 -------------~~K~i~~~~l~~ls~Q~f~~~~~~~~~~~~l~~~l~~i~~~~~s~si~~erL~i~~~ll~q~p~~M~ 170 (372)
T PF12231_consen 104 -------------SPKSICTHYLWCLSDQKFSPKIMTSDRVERLLAALHNIKNRFPSKSIISERLNIYKRLLSQFPQQMI 170 (372)
T ss_pred -------------CCHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 122333333333332 2333221 2222222222111 12334455667778888888888888
Q ss_pred HhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHH---------------hhhhhhhHHHHHhhccCCCChhHH
Q 001442 376 KNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQ---------------NQFHPQVLPALAGAMDDFQNPRVQ 440 (1076)
Q Consensus 376 ~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~---------------~~~~~~ll~~l~~~l~~~~~~~v~ 440 (1076)
.+...-++.++..+-+....+|..|..++......+++... ..+.+.+.+.+...+.+..+....
T Consensus 171 ~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~L~~mi~~~~~~~~a 250 (372)
T PF12231_consen 171 KHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKSVLEDLQRSLENGKLIQLYCERLKEMIKSKDEYKLA 250 (372)
T ss_pred HHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHHHHHHhccccccccHHHHHHHHHHHHHhCcCCcchH
Confidence 88887888888888888889999877766666655544210 011122222233333331111111
Q ss_pred HHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHhHhh---HHhhHhhhHHHHHHHHhc
Q 001442 441 AHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEH---FQKYYDAVMPFLKAILVN 517 (1076)
Q Consensus 441 ~~a~~aL~~l~~~~~~~~l~~~l~~ll~~l~~~l~~~~~~v~~~al~ai~~l~~~~~~~---~~~~~~~i~~~L~~~l~~ 517 (1076)
-..-.++..+...-. -.--+++...+...-.+++++++.+|..|+.|-..++.....+ ..+.+.-++.++...+..
T Consensus 251 ~~iW~~~i~LL~~~~-~~~w~~~n~wL~v~e~cFn~~d~~~k~~A~~aW~~liy~~~~~~~~~~k~l~lL~~Pl~~~l~~ 329 (372)
T PF12231_consen 251 MQIWSVVILLLGSSR-LDSWEHLNEWLKVPEKCFNSSDPQVKIQAFKAWRRLIYASNPNELTSPKRLKLLCQPLSSQLRR 329 (372)
T ss_pred HHHHHHHHHHhCCch-hhccHhHhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHhCc
Confidence 122222333332111 1123678888888888999999999999999999999865432 123444454444444443
No 212
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=93.69 E-value=2.5 Score=48.98 Aligned_cols=176 Identities=13% Similarity=0.174 Sum_probs=116.7
Q ss_pred chhhHHHHHHHHHHHcCCCcchHHHHHHHH--Hhh-----cCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhh
Q 001442 316 NYSVGQECLDRLAIALGGNTIVPVASEQLP--AYL-----AAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNS 388 (1076)
Q Consensus 316 ~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~--~~l-----~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~ 388 (1076)
+...|...|.++...+....++..++.... ..- ...++..|..-+-.|.. ... -....+.++..+..+
T Consensus 253 V~~~ae~~LKr~~~~~ed~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~k---S~~--Aa~~~~~~~~i~~~~ 327 (501)
T PF13001_consen 253 VSDRAEDLLKRLSVSLEDPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSK---SVI--AATSFPNILQIVFDG 327 (501)
T ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHH---hHH--HHhCCccHHHHHhcc
Confidence 445677777777766654455555555444 100 01245555444433332 211 113456788888889
Q ss_pred CCCC--ChhHHHHHHHHH---HHhhhhhchhHHhhhhhhhHHHHHhhcc-------CCCChhHHHHHHHHHHHhhhcCCc
Q 001442 389 FRDP--HPRVRWAAINAI---GQLSTDLGPDLQNQFHPQVLPALAGAMD-------DFQNPRVQAHAASAVLNFSENCTP 456 (1076)
Q Consensus 389 l~d~--~~~vr~~a~~~l---~~l~~~~~~~~~~~~~~~ll~~l~~~l~-------~~~~~~v~~~a~~aL~~l~~~~~~ 456 (1076)
+.++ +.++|..++..+ .....++++......-+.+...+...++ +..+...|..+..+|+.++...+.
T Consensus 328 l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe~lG~L~~~~p~ 407 (501)
T PF13001_consen 328 LYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAYETLGLLAKRAPS 407 (501)
T ss_pred ccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHHHHHHHHHHccCcc
Confidence 9887 789999999888 7777777766545555555555555563 113567899999999999988764
Q ss_pred ccccCchHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHhHh
Q 001442 457 EILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQE 498 (1076)
Q Consensus 457 ~~l~~~l~~ll~~l~~~l~~~~~~v~~~al~ai~~l~~~~~~ 498 (1076)
- +..- -.++..|+..+..+..++|..+-+|+++++.+...
T Consensus 408 l-~~~d-~~li~~LF~sL~~~~~evr~sIqeALssl~~af~~ 447 (501)
T PF13001_consen 408 L-FSKD-LSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKD 447 (501)
T ss_pred c-cccc-HHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhc
Confidence 2 2222 35788888888999999999999999999988765
No 213
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=93.68 E-value=5.6 Score=44.44 Aligned_cols=147 Identities=14% Similarity=0.172 Sum_probs=90.6
Q ss_pred HhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCC-------ChhHHHHHHHHHH
Q 001442 376 KNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQ-------NPRVQAHAASAVL 448 (1076)
Q Consensus 376 ~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~-------~~~v~~~a~~aL~ 448 (1076)
-|+.+|...+. +.++..|+.|+.+|.. +.=+++++|.+...+.+.- +-+.-........
T Consensus 207 lYy~~It~a~~----g~~~~~r~eAL~sL~T----------DsGL~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~r 272 (576)
T KOG2549|consen 207 LYYKEITEACT----GSDEPLRQEALQSLET----------DSGLQQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVR 272 (576)
T ss_pred HHHHHHHHHHh----cCCHHHHHHHHHhhcc----------CccHHHHHHHHHHHHhhheeeccccccHHHHHHHHHHHH
Confidence 44555555544 4788899999887654 2234566666666665421 2222233333334
Q ss_pred HhhhcCCcccccCchHHHHHHHHHHhhc----------CchhHHHHHHHHHHHHHHHhHhhHHhhHhhhHHHHHHHHhcc
Q 001442 449 NFSENCTPEILTPYLDGIVSKLLVLLQN----------GKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNA 518 (1076)
Q Consensus 449 ~l~~~~~~~~l~~~l~~ll~~l~~~l~~----------~~~~v~~~al~ai~~l~~~~~~~~~~~~~~i~~~L~~~l~~~ 518 (1076)
.+.++-. =.+.||+..+||.++.++-. .++.+|.-+...++.++...+.......+++...+...|.+.
T Consensus 273 SLl~Np~-i~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D~ 351 (576)
T KOG2549|consen 273 SLLDNPN-IFLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALLDN 351 (576)
T ss_pred HHhcCCc-cchhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCC
Confidence 4444432 24789999999999988632 357799999999999998888765555667777777777653
Q ss_pred CCchhhhhHHHHHHHHHHHHH
Q 001442 519 TDKSNRMLRAKSMECISLVGM 539 (1076)
Q Consensus 519 ~~~~~~~lr~~a~~~l~~i~~ 539 (1076)
.. .....-.++.++..++.
T Consensus 352 ~~--~~st~YGai~gL~~lg~ 370 (576)
T KOG2549|consen 352 KK--PLSTHYGAIAGLSELGH 370 (576)
T ss_pred CC--CchhhhhHHHHHHHhhh
Confidence 22 22223345556665554
No 214
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.64 E-value=1.1 Score=48.07 Aligned_cols=128 Identities=16% Similarity=0.167 Sum_probs=101.6
Q ss_pred HHhhcCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhH
Q 001442 345 PAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVL 424 (1076)
Q Consensus 345 ~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll 424 (1076)
...+++-+-++|.-|+..+..+....+..+..++..+++.+.....|.+..||.+...++..+.....+.-...+..-++
T Consensus 64 l~qlkHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp~~~l~~ 143 (393)
T KOG2149|consen 64 LSQLKHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSPMVSLLM 143 (393)
T ss_pred HhhhcCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcchHHHHH
Confidence 34567788999999999999988887777777888899999999999999999999999988777666654567788888
Q ss_pred HHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHh
Q 001442 425 PALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLL 474 (1076)
Q Consensus 425 ~~l~~~l~~~~~~~v~~~a~~aL~~l~~~~~~~~l~~~l~~ll~~l~~~l 474 (1076)
+.+..++.. -.+.+|..+...|..+++.+++.. ..+...+++.+...+
T Consensus 144 ~yi~~AMTh-it~~i~~dslkfL~~Ll~~~~p~~-~~~~~~il~n~~d~i 191 (393)
T KOG2149|consen 144 PYISSAMTH-ITPEIQEDSLKFLSLLLERYPDTF-SRYASKILENFKDVI 191 (393)
T ss_pred HHHHHHHhh-ccHHHHHhhHHHHHHHHHHcChHH-HHHHHHHHHHHHHHH
Confidence 888888888 789999999999999999887653 333333444444433
No 215
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=93.62 E-value=0.61 Score=39.23 Aligned_cols=83 Identities=22% Similarity=0.177 Sum_probs=65.5
Q ss_pred HHHHHHhhccCCChhHHhhhhHHHHHHHhhcCCCchHHHHHHHHHHHHhhcCCCCCChhhhhHHHHHHHHHHHHHhhcCC
Q 001442 886 YLPFLLEACNDENQDVRQAAVYGLGVCAEFGGSVVKPLVGEALSRLNVVIRHPNALQPENLMAYDNAVSALGKICQFHRD 965 (1076)
Q Consensus 886 ll~~l~~~l~~~~~~vr~~a~~~lg~l~~~~~~~~~~~~~~il~~L~~~l~~~~~~~~~~~~~~~na~~al~~i~~~~~~ 965 (1076)
.+...+..+.|+.+-+|..+...|..+++... ......+.++..+...+.+++ ..+.-||+.+++.++..+|.
T Consensus 4 ~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~D------syVYL~aI~~L~~La~~~p~ 76 (92)
T PF10363_consen 4 TLQEALSDLNDPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDED------SYVYLNAIKGLAALADRHPD 76 (92)
T ss_pred HHHHHHHHccCCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCC------chHHHHHHHHHHHHHHHChH
Confidence 34566777899999999999999999999877 223457889999999998764 47888999999999998876
Q ss_pred CCCHhhHHHHHHhhC
Q 001442 966 SIDAAQVVPAWLNCL 980 (1076)
Q Consensus 966 ~~~~~~~l~~~l~~l 980 (1076)
. ++|.+++..
T Consensus 77 ~-----vl~~L~~~y 86 (92)
T PF10363_consen 77 E-----VLPILLDEY 86 (92)
T ss_pred H-----HHHHHHHHH
Confidence 4 566665543
No 216
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.51 E-value=0.97 Score=51.26 Aligned_cols=150 Identities=15% Similarity=0.139 Sum_probs=103.7
Q ss_pred HHHHHhhcCCChhHHHHHHHHHHHHHhhc-----HHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHH
Q 001442 342 EQLPAYLAAPEWQKHHAALIALAQIAEGC-----AKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQ 416 (1076)
Q Consensus 342 ~~l~~~l~~~~~~~r~aal~~l~~l~~~~-----~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~ 416 (1076)
|.+-..++..|..+|-.|+..+-..-.-. .+.+...++.-...+...|.|+-|.||..|...+.++...+..-+.
T Consensus 177 p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~iP 256 (1005)
T KOG1949|consen 177 PILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMIP 256 (1005)
T ss_pred HHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcC
Confidence 44445677788889987766655432211 1234444555556788889999999999997776666554443332
Q ss_pred hhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCchhHHHHHHHHHHHHHH
Q 001442 417 NQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVAD 494 (1076)
Q Consensus 417 ~~~~~~ll~~l~~~l~~~~~~~v~~~a~~aL~~l~~~~~~~~l~~~l~~ll~~l~~~l~~~~~~v~~~al~ai~~l~~ 494 (1076)
...+..++..++.-+...+...||.+.+..|..++.+-. -.|.++.++|.+-..+.+....||-.+...|..+=.
T Consensus 257 ~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~---sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik~ 331 (1005)
T KOG1949|consen 257 PTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPL---SHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIKA 331 (1005)
T ss_pred HHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCcc---chhHHHHHHHhcchhhhccchhHHHHHHHHHHHHHh
Confidence 334556666666555433667899999999998886633 246788999999999999999999888888776543
No 217
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=93.28 E-value=0.81 Score=49.83 Aligned_cols=129 Identities=16% Similarity=0.211 Sum_probs=81.5
Q ss_pred HHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCC-----C-ChhHHHHHHHHH
Q 001442 374 MVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDF-----Q-NPRVQAHAASAV 447 (1076)
Q Consensus 374 ~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~-----~-~~~v~~~a~~aL 447 (1076)
..-++..+...+. +.+...|..|+..|.. +.-+.+++|.++..+.+. . +..+-......+
T Consensus 176 lq~yf~~It~a~~----~~~~~~r~~aL~sL~t----------D~gl~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v 241 (343)
T cd08050 176 LQLYFEEITEALV----GSNEEKRREALQSLRT----------DPGLQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMV 241 (343)
T ss_pred HHHHHHHHHHHHh----CCCHHHHHHHHHHhcc----------CCCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHH
Confidence 3344555554443 4677778777665543 234556666666665541 0 233334445555
Q ss_pred HHhhhcCCcccccCchHHHHHHHHHHhh----------cCchhHHHHHHHHHHHHHHHhHhhHHhhHhhhHHHHHHHHhc
Q 001442 448 LNFSENCTPEILTPYLDGIVSKLLVLLQ----------NGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVN 517 (1076)
Q Consensus 448 ~~l~~~~~~~~l~~~l~~ll~~l~~~l~----------~~~~~v~~~al~ai~~l~~~~~~~~~~~~~~i~~~L~~~l~~ 517 (1076)
..++.+-.- .+.||+-.++|.++.++- ..++.+|+.+...++.++...+.......++++..+.+.+.+
T Consensus 242 ~ALl~N~~l-~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d 320 (343)
T cd08050 242 RALLDNPNL-HLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALLD 320 (343)
T ss_pred HHHhcCCCC-chHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcC
Confidence 555555443 368999999999998872 235789999999999999988776444555666666666654
No 218
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=93.26 E-value=0.69 Score=50.35 Aligned_cols=128 Identities=16% Similarity=0.184 Sum_probs=86.3
Q ss_pred HHHHHHHHHcCCCcchHHHHHHHHHhhc--CC-ChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhC---------
Q 001442 322 ECLDRLAIALGGNTIVPVASEQLPAYLA--AP-EWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSF--------- 389 (1076)
Q Consensus 322 ~~l~~l~~~~~~~~~~~~l~~~l~~~l~--~~-~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l--------- 389 (1076)
.+|..|...-|=..++|.+..++.+.+. .. ++..-...+..+.++..+..=.+.+|+.+++|.++.++
T Consensus 197 ~aL~sL~tD~gl~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~le~Ylh~Lip~vltclv~~~l~~~~ 276 (343)
T cd08050 197 EALQSLRTDPGLQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLHLEPYLHQLIPSVLTCLVAKQLCSRP 276 (343)
T ss_pred HHHHHhccCCCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCchHHhHHHHHHHHHHHhhhHhhcCCC
Confidence 3566666554445667777777666543 22 56666666666677766655456788888888887765
Q ss_pred -CCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCChh-HHHHHHHHHHHh
Q 001442 390 -RDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPR-VQAHAASAVLNF 450 (1076)
Q Consensus 390 -~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~-v~~~a~~aL~~l 450 (1076)
.+.+..+|.-|+..++.++..++... ....+.++..+.+.+.|...+. ..-+|...|..|
T Consensus 277 ~~~~h~~LRd~AA~ll~~i~~~f~~~y-~~l~~ri~~tl~k~l~d~~~~~~~~YGAi~GL~~l 338 (343)
T cd08050 277 PDDNHWALRDYAARLLAQICRKFSTSY-NTLQPRITRTLLKALLDPKKPLTTHYGAIVGLSAL 338 (343)
T ss_pred CCchHHHHHHHHHHHHHHHHHHcCCCC-CcHHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHh
Confidence 34567999999999999999887654 3456677777888887733332 356666666655
No 219
>PF05536 Neurochondrin: Neurochondrin
Probab=93.18 E-value=21 Score=41.71 Aligned_cols=185 Identities=15% Similarity=0.178 Sum_probs=102.8
Q ss_pred hhHHHHHHHHHHHHHHHhHhhH--HhhHhhhHHHHHHHHhccCCchhhhhHHHHHHHHHHHHHH-hchhhhhhhHHHHHH
Q 001442 479 QMVQEGALTALASVADSSQEHF--QKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMA-VGKDKFRDDAKQVME 555 (1076)
Q Consensus 479 ~~v~~~al~ai~~l~~~~~~~~--~~~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~i~~~-~g~~~~~~~~~~ii~ 555 (1076)
...+.-++..++.++. .+++ .+-+-.-+|.|.+.+....+ ......+++|+..++.. -|.+.+... ..+.
T Consensus 71 ~~~~~LavsvL~~f~~--~~~~a~~~~~~~~IP~Lle~l~~~s~---~~~v~dalqcL~~Ias~~~G~~aLl~~--g~v~ 143 (543)
T PF05536_consen 71 EEYLSLAVSVLAAFCR--DPELASSPQMVSRIPLLLEILSSSSD---LETVDDALQCLLAIASSPEGAKALLES--GAVP 143 (543)
T ss_pred HHHHHHHHHHHHHHcC--ChhhhcCHHHHHHHHHHHHHHHcCCc---hhHHHHHHHHHHHHHcCcHhHHHHHhc--CCHH
Confidence 4566777788877776 2232 34555677888888776433 34556788899888722 233333321 2233
Q ss_pred HHHHHhcCCCCCCChhhHHHHHHHHHHHHHhccCccc----chhhhhHHHHHhccCCCCccccCCCCCccccCCCCcccc
Q 001442 556 VLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDFLP----YMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSME 631 (1076)
Q Consensus 556 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~l~~i~~~ll~~~~~~~~~~~~~~d~d~~~~~~d~~~~~ 631 (1076)
.+.+...+ .....+.++..|..++...+....+ .+..+++.+-+.+....
T Consensus 144 ~L~ei~~~----~~~~~E~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~---------------------- 197 (543)
T PF05536_consen 144 ALCEIIPN----QSFQMEIALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFH---------------------- 197 (543)
T ss_pred HHHHHHHh----CcchHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhc----------------------
Confidence 33332111 1234666777777777766643222 22233333322221100
Q ss_pred hhhcCCceeeecchhHHHHHHHHHHHHHHHHHhhh--cc----cccHHHHHHHhhhcccccCCHHHHHHHHHHHHHHHHH
Q 001442 632 TITLGDKRIGIKTSVLEEKATACNMLCCYADELKE--GF----FPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRS 705 (1076)
Q Consensus 632 ~~~~~~~~~~v~~~~~~~k~~A~~~l~~i~~~~~~--~~----~p~l~~~~~~l~~~l~~~~~~~vr~~a~~~l~~L~~~ 705 (1076)
-..|-.+|..|+.+....+. .- ..+...+...+...+.....+.-|..+..+...++..
T Consensus 198 ---------------~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~sr~~~~~R~~al~Laa~Ll~~ 262 (543)
T PF05536_consen 198 ---------------GEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQSRLTPSQRDPALNLAASLLDL 262 (543)
T ss_pred ---------------cchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 01245567778877776631 11 1244556666666666666788899999999998887
Q ss_pred HHHHHH
Q 001442 706 AKLAIE 711 (1076)
Q Consensus 706 ~~~~~~ 711 (1076)
.+..|-
T Consensus 263 ~G~~wl 268 (543)
T PF05536_consen 263 LGPEWL 268 (543)
T ss_pred hChHhh
Confidence 654443
No 220
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=93.15 E-value=32 Score=43.57 Aligned_cols=74 Identities=16% Similarity=0.136 Sum_probs=51.9
Q ss_pred HhHHHHHHhhccCCChhHHhhhhHHHHHHHhhcCCCchHHH--HHHHHHHHHhhcCCCCCChhhhhHHHHHHHHHHHHHh
Q 001442 884 ETYLPFLLEACNDENQDVRQAAVYGLGVCAEFGGSVVKPLV--GEALSRLNVVIRHPNALQPENLMAYDNAVSALGKICQ 961 (1076)
Q Consensus 884 ~~ll~~l~~~l~~~~~~vr~~a~~~lg~l~~~~~~~~~~~~--~~il~~L~~~l~~~~~~~~~~~~~~~na~~al~~i~~ 961 (1076)
...+..++..|++....+-.|++.+|..|.-..+.+ +.++ ...+..|.+++... +..+...++.+|-.++.
T Consensus 529 ~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~D-Qq~LwD~gAv~mLrnLIhSK------hkMIa~GSaaALrNLln 601 (2195)
T KOG2122|consen 529 HNCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPED-QQMLWDDGAVPMLRNLIHSK------HKMIAMGSAAALRNLLN 601 (2195)
T ss_pred hhHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHH-HHHHHhcccHHHHHHHHhhh------hhhhhhhHHHHHHHHhc
Confidence 456788999999999999999999999998777642 1121 22345566666543 34667778888888876
Q ss_pred hcC
Q 001442 962 FHR 964 (1076)
Q Consensus 962 ~~~ 964 (1076)
+.|
T Consensus 602 ~RP 604 (2195)
T KOG2122|consen 602 FRP 604 (2195)
T ss_pred CCc
Confidence 654
No 221
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=93.10 E-value=0.32 Score=45.87 Aligned_cols=105 Identities=12% Similarity=0.086 Sum_probs=75.3
Q ss_pred CHHHHHHHHHHHHHHHHHhhhhhHhhHHhHHHHHHhhccCCChhHHhhhhHHHHHHHhhcCCCchHHHHHHHHHHHHhhc
Q 001442 857 TAEERRIAICIFDDVAEQCREAALKYYETYLPFLLEACNDENQDVRQAAVYGLGVCAEFGGSVVKPLVGEALSRLNVVIR 936 (1076)
Q Consensus 857 ~~~~r~~al~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~vr~~a~~~lg~l~~~~~~~~~~~~~~il~~L~~~l~ 936 (1076)
.-+.|..|+-++..++..|...+. +..++..+..++.| +.++|.-+...+..++...+..+.+.+..+.+.+...++
T Consensus 40 GLelRK~ayE~lytlLd~~~~~~~--~~~~~~~v~~GL~D-~~DIk~L~~~~l~kl~~~~p~~v~~~Ld~l~~~l~~~L~ 116 (169)
T PF08623_consen 40 GLELRKAAYECLYTLLDTCLSRID--ISEFLDRVEAGLKD-EHDIKMLCHLMLSKLAQLAPEEVLQRLDSLVEPLRKTLS 116 (169)
T ss_dssp GGHHHHHHHHHHHHHHHSTCSSS---HHHHHHHHHHTTSS--HHHHHHHHHHHHHHHHS-HHHHHHCCTTTHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHhCC--HHHHHHHHHhhcCC-cHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHhh
Confidence 346899999999999998776543 56778899999999 999999999999999999987777777888888888775
Q ss_pred CCCC----CC--hhhhhHHHHHHHHHHHHHhhcC
Q 001442 937 HPNA----LQ--PENLMAYDNAVSALGKICQFHR 964 (1076)
Q Consensus 937 ~~~~----~~--~~~~~~~~na~~al~~i~~~~~ 964 (1076)
..-. ++ |...+....++.++..+-...+
T Consensus 117 ~k~k~~AvkQE~Ek~~E~~rs~lr~~~~l~~~i~ 150 (169)
T PF08623_consen 117 KKLKENAVKQEIEKQQELIRSVLRAVKALNSKIP 150 (169)
T ss_dssp ----TTS-HHHHHHHHHHHHHHHHHHHHH-HSST
T ss_pred ccCCCCcccccHHHHHHHHHHHHHHHHHHHHhCc
Confidence 3211 11 2334566667777666644443
No 222
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=93.09 E-value=52 Score=45.95 Aligned_cols=92 Identities=15% Similarity=0.330 Sum_probs=69.0
Q ss_pred chhHHHHHHhhcCC---------CHHHHHHHHHHHHHHHHHHHHhhCCcchHhHHhhhHHHHHHHHHHHHhCCCHHHHHH
Q 001442 142 PELLPFMFQCVSSD---------SVKLQESAFLIFAQLIINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQE 212 (1076)
Q Consensus 142 ~~ll~~l~~~~~~~---------~~~~r~~al~~L~~l~~~~~~~l~~~~~~~~~~~l~p~~l~~l~~~~~~~~~~~~~~ 212 (1076)
..++|.+.+.+.+. ....|...+.++..+ . ..+.|++....++.++.+.+..++++...-
T Consensus 48 ~~~ip~~l~~l~~~~~~~~~~~~~~~lR~~~Leil~r~--------~---~~e~~~~~~~~~~~~~~~vl~~dNeen~~l 116 (3550)
T KOG0889|consen 48 EMLIPLLLNFLENTEKSFSAESPEQELRNLVLEILNRL--------P---HNEVFKPFSQELLKVLMRVLTNDNEENAIL 116 (3550)
T ss_pred HHHHHHHHHHhcccCchhhhcCcHHHHHHHHHHHHHhc--------c---cHHHHHHHHHHHHHHHHHHHhcccchhhhh
Confidence 34566666655443 235666666666443 1 256677777788888888888899999999
Q ss_pred HHHHHHHHHccCcHHHHHhHHHHHHHHHHHhc
Q 001442 213 ALELLIELAGTEPRFLRRQLVDVVGSMLQIAE 244 (1076)
Q Consensus 213 ~~~~l~~l~~~~~~~~~~~l~~l~~~l~~~~~ 244 (1076)
|++++..+.+.+...+..|+..++.+..++..
T Consensus 117 ~lkii~~l~r~f~~~~~~~v~~fl~~V~~ly~ 148 (3550)
T KOG0889|consen 117 CLKIITDLFRQFKSLVEQHVQPFLDIVIDLYK 148 (3550)
T ss_pred HHHHHHHHHHhhchHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988888887653
No 223
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=92.82 E-value=23 Score=41.19 Aligned_cols=124 Identities=19% Similarity=0.082 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhchhhhHHHHHHhHhhhhcCCCCHHHHHHHHHHHHHHHHHhhhhhHhhHHhHHHHHHhhcc
Q 001442 816 EEVFDQVGEILGTLIKTFKAAFLPFFDELSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREAALKYYETYLPFLLEACN 895 (1076)
Q Consensus 816 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~ 895 (1076)
.++++.+.-.||-++-.-++ .+|.+..+|..+.++-+|..+.-+||-.+...|.. .-+..+-....
T Consensus 569 DDVrRaAVialGFVl~~dp~--------~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~------eAi~lLepl~~ 634 (929)
T KOG2062|consen 569 DDVRRAAVIALGFVLFRDPE--------QLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLK------EAINLLEPLTS 634 (929)
T ss_pred hHHHHHHHHHheeeEecChh--------hchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcH------HHHHHHhhhhc
Confidence 35777887777766544443 34556666667788889988888888777666653 22223333345
Q ss_pred CCChhHHhhhhHHHHHHHhhcCCCchHHHHHHHHHHHHhhcCCCCCChhhhhHHHHHHHHHH
Q 001442 896 DENQDVRQAAVYGLGVCAEFGGSVVKPLVGEALSRLNVVIRHPNALQPENLMAYDNAVSALG 957 (1076)
Q Consensus 896 ~~~~~vr~~a~~~lg~l~~~~~~~~~~~~~~il~~L~~~l~~~~~~~~~~~~~~~na~~al~ 957 (1076)
|+...||+.|..+++-+.....+...|.+..+-+.+.+.+.+.. ++..++=.|+-+=|
T Consensus 635 D~~~fVRQgAlIa~amIm~Q~t~~~~pkv~~frk~l~kvI~dKh----Ed~~aK~GAilAqG 692 (929)
T KOG2062|consen 635 DPVDFVRQGALIALAMIMIQQTEQLCPKVNGFRKQLEKVINDKH----EDGMAKFGAILAQG 692 (929)
T ss_pred ChHHHHHHHHHHHHHHHHHhcccccCchHHHHHHHHHHHhhhhh----hHHHHHHHHHHHhh
Confidence 88889999999999999998888888999999999999987643 23455555554433
No 224
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.69 E-value=1.3 Score=50.23 Aligned_cols=135 Identities=21% Similarity=0.288 Sum_probs=100.3
Q ss_pred hcCCChHHHHHHHHHHHHhh-hcCchHHH-----------HHHHHHHccCCCHHHHHHHHHHHHHhcccCCCCcccCCCH
Q 001442 31 LMSTSNEQRSEAELLFNLCK-QQDPDSLT-----------LKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSL 98 (1076)
Q Consensus 31 ~~s~d~~~r~~Ae~~L~~~~-~~~p~~~~-----------~~L~~il~~~~~~~~R~~a~v~Lk~~i~~~~~~~w~~l~~ 98 (1076)
+.-+|.++|..|-..+-++. -.+|+... -.|..+| .+.-|.+|..|..-+-+.+.+. |.-+++
T Consensus 183 L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL-~d~~p~VRS~a~~gv~k~~s~f----We~iP~ 257 (1005)
T KOG1949|consen 183 LKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLL-EDPYPMVRSTAILGVCKITSKF----WEMIPP 257 (1005)
T ss_pred hccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHh-cCCCchHHHHHHHHHHHHHHHH----HHHcCH
Confidence 34578899888776654432 22443311 2233333 4678999999999999999886 999999
Q ss_pred hHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhcccCCCCcchhHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 001442 99 HTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQL 170 (1076)
Q Consensus 99 ~~~~~lk~~Ll~~l~~~~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~~~~~~~r~~al~~L~~l 170 (1076)
.+...+...++.-+..|+...||-+....+.-++..-...+....++|.+-..+.+....+|-++...|..+
T Consensus 258 ~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~i 329 (1005)
T KOG1949|consen 258 TILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKI 329 (1005)
T ss_pred HHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccchhHHHHHHHhcchhhhccchhHHHHHHHHHHHH
Confidence 998888888888888889999999999888888764333234566777777788888899998888888766
No 225
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=92.62 E-value=1.2 Score=49.49 Aligned_cols=107 Identities=18% Similarity=0.200 Sum_probs=82.3
Q ss_pred HhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCC
Q 001442 376 KNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCT 455 (1076)
Q Consensus 376 ~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~aL~~l~~~~~ 455 (1076)
..+..++..++.++..++..||..++..+..++...++ +.+...+.++..+.+.+-| ..+.||..|..+|..+-+...
T Consensus 87 ~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~e-IDe~l~N~L~ekl~~R~~D-RE~~VR~eAv~~L~~~Qe~~~ 164 (885)
T COG5218 87 ELVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVRE-IDEVLANGLLEKLSERLFD-REKAVRREAVKVLCYYQEMEL 164 (885)
T ss_pred HHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcch-HHHHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHHHHhccC
Confidence 45667788899999999999999999999999987765 4356778888889988888 889999999999999976544
Q ss_pred cccccCchHHHHHHHHHHhh-cCchhHHHHHHHHH
Q 001442 456 PEILTPYLDGIVSKLLVLLQ-NGKQMVQEGALTAL 489 (1076)
Q Consensus 456 ~~~l~~~l~~ll~~l~~~l~-~~~~~v~~~al~ai 489 (1076)
.+. ..+...+...++ +|+.+||+.++..|
T Consensus 165 nee-----n~~~n~l~~~vqnDPS~EVRr~allni 194 (885)
T COG5218 165 NEE-----NRIVNLLKDIVQNDPSDEVRRLALLNI 194 (885)
T ss_pred ChH-----HHHHHHHHHHHhcCcHHHHHHHHHHHe
Confidence 321 233444555554 56778998887655
No 226
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=92.45 E-value=8.3 Score=45.20 Aligned_cols=106 Identities=17% Similarity=0.191 Sum_probs=65.4
Q ss_pred HhhcCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHH--HHHHHhhCCCCChhHHHHHHHHHHHhhhhhch---hHHhhhh
Q 001442 346 AYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQV--LSMVLNSFRDPHPRVRWAAINAIGQLSTDLGP---DLQNQFH 420 (1076)
Q Consensus 346 ~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i--~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~~ 420 (1076)
.++.+++..+.-.|..-+.-++.+-.+ .+..+.++ ++.++..|.+++..|+..||++|..++-.-.. .+...+.
T Consensus 240 ~mL~~q~~~~qsnaaaylQHlcfgd~~-ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKlai~~~ 318 (717)
T KOG1048|consen 240 SMLMSQDPSVQSNAAAYLQHLCFGDNK-IKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKLAIKEL 318 (717)
T ss_pred HHHhccChhhhHHHHHHHHHHHhhhHH-HHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccchhhhhc
Confidence 445555555554444444444444333 22344444 67888899999999999999999998743322 1111222
Q ss_pred hhhHHHHHhhccCCCChhHHHHHHHHHHHhhhc
Q 001442 421 PQVLPALAGAMDDFQNPRVQAHAASAVLNFSEN 453 (1076)
Q Consensus 421 ~~ll~~l~~~l~~~~~~~v~~~a~~aL~~l~~~ 453 (1076)
.=+|.+++.|....+..|++.....|-++-..
T Consensus 319 -~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~ 350 (717)
T KOG1048|consen 319 -NGVPTLVRLLRHTQDDEVRELITGILWNLSSN 350 (717)
T ss_pred -CChHHHHHHHHhhcchHHHHHHHHHHhcccch
Confidence 33566777776545678888877777776544
No 227
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=92.42 E-value=3 Score=38.71 Aligned_cols=95 Identities=16% Similarity=0.113 Sum_probs=69.2
Q ss_pred chHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHhHhhHHhhH--hhhHHHHHHHHhccCCchhhhhHHHHHHHHHHHHH
Q 001442 462 YLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYY--DAVMPFLKAILVNATDKSNRMLRAKSMECISLVGM 539 (1076)
Q Consensus 462 ~l~~ll~~l~~~l~~~~~~v~~~al~ai~~l~~~~~~~~~~~~--~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~i~~ 539 (1076)
.-...+..|.+-+.+.++.++..++..+..++..+|..|...+ ..++..|..++..........+|.++++.+...+.
T Consensus 39 ~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~ 118 (140)
T PF00790_consen 39 GAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAE 118 (140)
T ss_dssp HHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHH
Confidence 3467788899999999999999999999999999999887554 35777777766654333323388899999988888
Q ss_pred HhchhhhhhhHHHHHHH
Q 001442 540 AVGKDKFRDDAKQVMEV 556 (1076)
Q Consensus 540 ~~g~~~~~~~~~~ii~~ 556 (1076)
.++.+.-.+++.++++.
T Consensus 119 ~f~~~~~~~~i~~~y~~ 135 (140)
T PF00790_consen 119 AFKSDPELSLIQDTYKR 135 (140)
T ss_dssp HTTTSTTGHHHHHHHHH
T ss_pred HHCCCCCchHHHHHHHH
Confidence 77543333444444443
No 228
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=92.32 E-value=2.9 Score=50.04 Aligned_cols=161 Identities=12% Similarity=0.115 Sum_probs=106.0
Q ss_pred HHHHHHHhhcCCChhHHHHHHHHHHHHHhhcHHHHHHhHHH-HHHHHHhhCCC---CChhHHHHHHHHHHHhhhhhchhH
Q 001442 340 ASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQ-VLSMVLNSFRD---PHPRVRWAAINAIGQLSTDLGPDL 415 (1076)
Q Consensus 340 l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~-i~~~l~~~l~d---~~~~vr~~a~~~l~~l~~~~~~~~ 415 (1076)
++|++.++++++-...|-.-++.-+.|...-+..-...+.+ .-...++.|.+ -++.-|..|+..|+.++..+.-.-
T Consensus 513 IFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ 592 (1387)
T KOG1517|consen 513 IFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQ 592 (1387)
T ss_pred hHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhH
Confidence 56666677787766667666666665543222100011111 00112222322 135788899999999998875433
Q ss_pred HhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHH
Q 001442 416 QNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADS 495 (1076)
Q Consensus 416 ~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~aL~~l~~~~~~~~l~~~l~~ll~~l~~~l~~~~~~v~~~al~ai~~l~~~ 495 (1076)
....-..++..++..+.+.+.+-.|.=.|.+|+.+-++.......-.=..-...|...+.++-++||..++-|+|++...
T Consensus 593 ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~ 672 (1387)
T KOG1517|consen 593 KACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSN 672 (1387)
T ss_pred HHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcc
Confidence 23345678888889998834688899999999999888754222222344577888999999999999999999999987
Q ss_pred hHhhH
Q 001442 496 SQEHF 500 (1076)
Q Consensus 496 ~~~~~ 500 (1076)
..++|
T Consensus 673 ~~d~f 677 (1387)
T KOG1517|consen 673 GSDNF 677 (1387)
T ss_pred ccccc
Confidence 64444
No 229
>PF05536 Neurochondrin: Neurochondrin
Probab=92.17 E-value=29 Score=40.68 Aligned_cols=238 Identities=14% Similarity=0.153 Sum_probs=139.6
Q ss_pred HHHHHHHhhcCCChhHHHHHHHHHHHHHhhcHH--HHH-HhHHHH-HHHHHhhCCC-------CChhHHHHHHHHHHHhh
Q 001442 340 ASEQLPAYLAAPEWQKHHAALIALAQIAEGCAK--VMV-KNLEQV-LSMVLNSFRD-------PHPRVRWAAINAIGQLS 408 (1076)
Q Consensus 340 l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~--~~~-~~l~~i-~~~l~~~l~d-------~~~~vr~~a~~~l~~l~ 408 (1076)
.+..+...+++.+-..|.+|+..+..+..+-.. ... ..++.+ .+++-+.|.. +....+.-|...+..|+
T Consensus 6 ~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~ 85 (543)
T PF05536_consen 6 SLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFC 85 (543)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHc
Confidence 345556677887888999999999999875431 111 112222 1233333332 23456777788888887
Q ss_pred hhhchhH-HhhhhhhhHHHHHhhccCCCCh-hHHHHHHHHHHHhhhcCCc-ccccCchHHHHHHHHHHhhcCchhHHHHH
Q 001442 409 TDLGPDL-QNQFHPQVLPALAGAMDDFQNP-RVQAHAASAVLNFSENCTP-EILTPYLDGIVSKLLVLLQNGKQMVQEGA 485 (1076)
Q Consensus 409 ~~~~~~~-~~~~~~~ll~~l~~~l~~~~~~-~v~~~a~~aL~~l~~~~~~-~~l~~~l~~ll~~l~~~l~~~~~~v~~~a 485 (1076)
. .|++ ..+-+-.-+|.+++.+.. ... .+...++.+|..++..-.. +.+ .-...++.|...+.+ ++..++.+
T Consensus 86 ~--~~~~a~~~~~~~~IP~Lle~l~~-~s~~~~v~dalqcL~~Ias~~~G~~aL--l~~g~v~~L~ei~~~-~~~~~E~A 159 (543)
T PF05536_consen 86 R--DPELASSPQMVSRIPLLLEILSS-SSDLETVDDALQCLLAIASSPEGAKAL--LESGAVPALCEIIPN-QSFQMEIA 159 (543)
T ss_pred C--ChhhhcCHHHHHHHHHHHHHHHc-CCchhHHHHHHHHHHHHHcCcHhHHHH--HhcCCHHHHHHHHHh-CcchHHHH
Confidence 6 3333 134566788999999887 444 7888999999999843221 111 112446666666665 55677888
Q ss_pred HHHHHHHHHHhHhhH----HhhHhhhHHHHHHHHhccCCchhhhhHHHHHHHHHHHHHHhchh---h--hhhhHHHHHHH
Q 001442 486 LTALASVADSSQEHF----QKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKD---K--FRDDAKQVMEV 556 (1076)
Q Consensus 486 l~ai~~l~~~~~~~~----~~~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~g~~---~--~~~~~~~ii~~ 556 (1076)
+..+..+....+... ...+..+++.+...+....+ ..+..+++.++.+-...+.. . -......+...
T Consensus 160 l~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~----~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~g 235 (543)
T PF05536_consen 160 LNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHG----EDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKG 235 (543)
T ss_pred HHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhcc----chHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHH
Confidence 888888877666322 23445666666666554322 23445566666665443210 0 11234455555
Q ss_pred HHHHhcCCCCCCChhhHHHHHHHHHHHHHhccC
Q 001442 557 LMSLQGSQMETDDPTTSYMLQAWARLCKCLGQD 589 (1076)
Q Consensus 557 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 589 (1076)
+..+..+... ...|..++...+.+...+|.+
T Consensus 236 l~~iL~sr~~--~~~R~~al~Laa~Ll~~~G~~ 266 (543)
T PF05536_consen 236 LRDILQSRLT--PSQRDPALNLAASLLDLLGPE 266 (543)
T ss_pred HHHHHhcCCC--HHHHHHHHHHHHHHHHHhChH
Confidence 5554443322 335777777777787777754
No 230
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=92.01 E-value=30 Score=40.80 Aligned_cols=110 Identities=22% Similarity=0.248 Sum_probs=66.1
Q ss_pred HHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHh-hhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCc--ccc
Q 001442 383 SMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQN-QFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTP--EIL 459 (1076)
Q Consensus 383 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~-~~~~~ll~~l~~~l~~~~~~~v~~~a~~aL~~l~~~~~~--~~l 459 (1076)
+..+.+|...++.++..|..-+..++-.- ..+.. -.--.=++.++..|.. ++.+|+..||++|.++.-.-.. ..+
T Consensus 236 pe~i~mL~~q~~~~qsnaaaylQHlcfgd-~~ik~~vrqlggI~kLv~Ll~~-~~~evq~~acgaLRNLvf~~~~~~NKl 313 (717)
T KOG1048|consen 236 PEVISMLMSQDPSVQSNAAAYLQHLCFGD-NKIKSRVRQLGGIPKLVALLDH-RNDEVQRQACGALRNLVFGKSTDSNKL 313 (717)
T ss_pred HHHHHHHhccChhhhHHHHHHHHHHHhhh-HHHHHHHHHhccHHHHHHHhcC-CcHHHHHHHHHHHHhhhcccCCcccch
Confidence 34444556777778777776666665321 11211 1112345678888888 8999999999999999855332 111
Q ss_pred -cCchHHHHHHHHHHhhc-CchhHHHHHHHHHHHHHHH
Q 001442 460 -TPYLDGIVSKLLVLLQN-GKQMVQEGALTALASVADS 495 (1076)
Q Consensus 460 -~~~l~~ll~~l~~~l~~-~~~~v~~~al~ai~~l~~~ 495 (1076)
.++.+. ++.++..+.. .+.++++.+-..+-.+...
T Consensus 314 ai~~~~G-v~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~ 350 (717)
T KOG1048|consen 314 AIKELNG-VPTLVRLLRHTQDDEVRELITGILWNLSSN 350 (717)
T ss_pred hhhhcCC-hHHHHHHHHhhcchHHHHHHHHHHhcccch
Confidence 133333 4455555554 5677887776555555443
No 231
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=91.96 E-value=9.4 Score=45.64 Aligned_cols=154 Identities=15% Similarity=0.121 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHc--CCCcchHHHHHHHHHhhcCCChhHHHHHHHHHHHHHh-hcHH-------HHHHhHHHHHHHHHhhC
Q 001442 320 GQECLDRLAIAL--GGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAE-GCAK-------VMVKNLEQVLSMVLNSF 389 (1076)
Q Consensus 320 a~~~l~~l~~~~--~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~-~~~~-------~~~~~l~~i~~~l~~~l 389 (1076)
+.+++..+.... +.+.++..+++.+..--..++...|..+++++|.++. .|.+ ....+++.+...+..+.
T Consensus 376 a~~~~~~~~~~~~~Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~ 455 (574)
T smart00638 376 AAQLLAVLPHTARYPTEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAV 455 (574)
T ss_pred HHHHHHHHHHhhhcCCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHH
Confidence 444555544443 3233333333333221122467789999999999986 3421 11233444444444455
Q ss_pred CCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHH
Q 001442 390 RDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSK 469 (1076)
Q Consensus 390 ~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~aL~~l~~~~~~~~l~~~l~~ll~~ 469 (1076)
...+...+..++.+||.+.... ....+.|.+. +-.. ....+|..|++||..+.+..+.. +-+.
T Consensus 456 ~~~~~~~~~~~LkaLGN~g~~~-------~i~~l~~~l~-~~~~-~~~~iR~~Av~Alr~~a~~~p~~--------v~~~ 518 (574)
T smart00638 456 SKGDEEEIQLYLKALGNAGHPS-------SIKVLEPYLE-GAEP-LSTFIRLAAILALRNLAKRDPRK--------VQEV 518 (574)
T ss_pred hcCCchheeeHHHhhhccCChh-------HHHHHHHhcC-CCCC-CCHHHHHHHHHHHHHHHHhCchH--------HHHH
Confidence 5556667788899999876321 1122222222 1122 46789999999999887765532 3344
Q ss_pred HHHHhhc--CchhHHHHHHHHHH
Q 001442 470 LLVLLQN--GKQMVQEGALTALA 490 (1076)
Q Consensus 470 l~~~l~~--~~~~v~~~al~ai~ 490 (1076)
++.++.+ .+.++|-.|+..+-
T Consensus 519 l~~i~~n~~e~~EvRiaA~~~lm 541 (574)
T smart00638 519 LLPIYLNRAEPPEVRMAAVLVLM 541 (574)
T ss_pred HHHHHcCCCCChHHHHHHHHHHH
Confidence 5555544 35678866665554
No 232
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=91.93 E-value=5 Score=44.81 Aligned_cols=113 Identities=17% Similarity=0.230 Sum_probs=73.4
Q ss_pred HHHHHHhhcHHHHHHhHHHHHHHHHhhC----------CCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhc
Q 001442 362 ALAQIAEGCAKVMVKNLEQVLSMVLNSF----------RDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAM 431 (1076)
Q Consensus 362 ~l~~l~~~~~~~~~~~l~~i~~~l~~~l----------~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l 431 (1076)
.+.++..+..=.+.+|+..++|.++.++ .|.+..+|.-|+..+..++..++... ....+.++..+.+.+
T Consensus 270 m~rSLl~Np~i~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y-~~L~~Rit~tl~k~l 348 (576)
T KOG2549|consen 270 MVRSLLDNPNIFLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLY-NNLQPRITRTLSKAL 348 (576)
T ss_pred HHHHHhcCCccchhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHH-HHHHHHHHHHHHHHh
Confidence 3333444333356788888888777653 35678899999999999999987765 345667788888888
Q ss_pred cCC-CChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhh
Q 001442 432 DDF-QNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQ 475 (1076)
Q Consensus 432 ~~~-~~~~v~~~a~~aL~~l~~~~~~~~l~~~l~~ll~~l~~~l~ 475 (1076)
.|. ........+...|..|....-...+.|.+......+...+.
T Consensus 349 ~D~~~~~st~YGai~gL~~lg~~~I~~~ilp~L~~~~~~l~~~l~ 393 (576)
T KOG2549|consen 349 LDNKKPLSTHYGAIAGLSELGHEVIRTVILPNLKEYNERLQSVLD 393 (576)
T ss_pred cCCCCCchhhhhHHHHHHHhhhhhhhheeccchHHHHHHhhhhcc
Confidence 873 23455666766766665433323445566555555544433
No 233
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=90.96 E-value=33 Score=38.98 Aligned_cols=79 Identities=14% Similarity=0.167 Sum_probs=56.9
Q ss_pred ChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHH-HHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhh
Q 001442 352 EWQKHHAALIALAQIAEGCAKVMVKNLEQVLS-MVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGA 430 (1076)
Q Consensus 352 ~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~-~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~ 430 (1076)
-++.|.+|..+||.+....++ ..+..+.. .+..+|++++..=|..|+..+..++............+.+.+.|...
T Consensus 100 v~r~Ri~aA~ALG~l~~~~~~---~~~~~~~~~~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~~ 176 (441)
T PF12054_consen 100 VIRARIAAAKALGLLLSYWPE---SSLQEIFQPLLLPYLNSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLEI 176 (441)
T ss_pred HHHHHHHHHHHHHHHHHhccc---chHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHHH
Confidence 368899999999999987643 33444554 68889999999999999999999988765432111124566666677
Q ss_pred ccC
Q 001442 431 MDD 433 (1076)
Q Consensus 431 l~~ 433 (1076)
|.+
T Consensus 177 L~~ 179 (441)
T PF12054_consen 177 LEN 179 (441)
T ss_pred HcC
Confidence 764
No 234
>KOG3961 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.95 E-value=0.93 Score=43.44 Aligned_cols=93 Identities=15% Similarity=0.209 Sum_probs=71.1
Q ss_pred hhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHH---h
Q 001442 420 HPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADS---S 496 (1076)
Q Consensus 420 ~~~ll~~l~~~l~~~~~~~v~~~a~~aL~~l~~~~~~~~l~~~l~~ll~~l~~~l~~~~~~v~~~al~ai~~l~~~---~ 496 (1076)
+...+|.+..+|.+ .+..-+--|-..+..++...+.+ +.|.+++++..|-..+.+.+.++...++.+|..++.. +
T Consensus 112 y~~yLp~F~dGL~e-~~hpyrf~A~~Gi~DLLl~~g~k-ilpVLPqLI~plK~al~trd~ev~~~~Lkvlq~lv~~~~~v 189 (262)
T KOG3961|consen 112 YCPYLPLFFDGLAE-TDHPYRFVARQGITDLLLAGGEK-ILPVLPQLILPLKAALVTRDDEVICRTLKVLQQLVVSVGCV 189 (262)
T ss_pred chHHHHHHhhhhhh-cCCCcchhhhhcHHHHHHhcccc-cccccHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccc
Confidence 45678888888876 33333444555566666666644 6799999999999999999999999998888887654 5
Q ss_pred HhhHHhhHhhhHHHHHHH
Q 001442 497 QEHFQKYYDAVMPFLKAI 514 (1076)
Q Consensus 497 ~~~~~~~~~~i~~~L~~~ 514 (1076)
|..+.||+.+++|.+...
T Consensus 190 G~aLVPfYRQlLp~~n~~ 207 (262)
T KOG3961|consen 190 GAALVPFYRQLLPVLNTF 207 (262)
T ss_pred chhhhhHHHHhhhhhhhh
Confidence 678999999999987543
No 235
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.76 E-value=22 Score=45.37 Aligned_cols=281 Identities=14% Similarity=0.139 Sum_probs=147.7
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhCCcchHhHHhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccCc
Q 001442 146 PFMFQCVSSDSVKLQESAFLIFAQLIINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEP 225 (1076)
Q Consensus 146 ~~l~~~~~~~~~~~r~~al~~L~~l~~~~~~~l~~~~~~~~~~~l~p~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~ 225 (1076)
..+++-+.--|+..+..|+.-|..++ ++.+......++|.+...+.+++.+++..+|......+..+.....
T Consensus 44 ~~I~kkL~KkD~~TK~KaL~eL~eli--------~~~~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lk 115 (1312)
T KOG0803|consen 44 DIIVKKLLKRDETTKIKALQELSELI--------DTSDTEELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLK 115 (1312)
T ss_pred HHHHHHHhccChHHHHHHHHhHHHhc--------ccccchHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHH
Confidence 34455555567888888998886663 2223444455788888888888899999999999999999998888
Q ss_pred HHHHHhHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHhhcccchhhccchhhHHHHHHHHHHhhcCCCCCccccCCC
Q 001442 226 RFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAE 305 (1076)
Q Consensus 226 ~~~~~~l~~l~~~l~~~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~dd~~~~~~~ 305 (1076)
+.+.||+..+++..+-... +.+-.+...|...+...-.. .+.+..+.. +-+.+.+.+...+.....+.
T Consensus 116 k~lsp~LK~li~~wl~~~~--d~~~~vs~aa~~sf~~~f~~-ek~~~v~~~---c~~~i~~~~~~~~~~~~~~s------ 183 (1312)
T KOG0803|consen 116 KKLSPFLKSLIPPWLGGQF--DLDYPVSEAAKASFKDGFAE-EKDRHVWFK---CDPEIFYLVTEILVKETPDS------ 183 (1312)
T ss_pred HHhhHHHHhhhhhhhheec--ccchHHHHHHHHHHHhhcCh-hhhHHHHHH---hhHHHHHHHHHHHhccCccc------
Confidence 9999999999987665432 33444555554443332221 112222211 22344444444432111110
Q ss_pred CCCcccCCCCchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhc-CCChhHHHHHHHHHHHHHhhcHHHHHHhHHHH--H
Q 001442 306 TEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLA-APEWQKHHAALIALAQIAEGCAKVMVKNLEQV--L 382 (1076)
Q Consensus 306 ~e~~d~~e~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i--~ 382 (1076)
.++ .+..+.+.++.-- ..+++..+-.+...+. ..+-..+. . ....+..+ -
T Consensus 184 ---lSd----~~~~s~Ee~E~k~-----~Rvi~ssLl~l~~l~~~~~~~~el~-------~--------~~~~~kt~~s~ 236 (1312)
T KOG0803|consen 184 ---LSD----LRTLSSEELESKY-----QRVISSSLLLLLKLFKITGDEEELH-------S--------LSEKEKTFLSS 236 (1312)
T ss_pred ---cch----hhhcchHHHHHhh-----HHHHHHHHHHHHHHHHHhCchHhhh-------h--------hhhhhhhhhhH
Confidence 000 0000001100000 0111111111111110 00000000 0 01112222 2
Q ss_pred HHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCccccc-C
Q 001442 383 SMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILT-P 461 (1076)
Q Consensus 383 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~aL~~l~~~~~~~~l~-~ 461 (1076)
..+++.++++.|.+|.+...++..++..+..-+.......+-+.+...+.+ .+ .|......++..+......+.+. +
T Consensus 237 ~~fWk~~~~k~~~i~~~~~ell~~l~~~i~~~~~~~~~~~l~~~~~~~~~~-~d-~~c~~~we~Vl~~~~~~p~~~~~~~ 314 (1312)
T KOG0803|consen 237 EKFWKLLKSKSPSIKVALLELLLSLIDDILNRVMESEKNYLKPVLLGSIDS-LD-HVCSSMWEKVLLNLSSLPDEWLHLN 314 (1312)
T ss_pred HHHHHHhcCCCcchhHHHHHHHHHHHhhhHHhcchhhhhHhhHHHHccccc-cc-cccHHHHHHHHHHhhhhhHHHhccc
Confidence 577888999999999999999999998876653233344455555555555 44 55555555555444444432211 1
Q ss_pred --chHHHHHHHHHHhh
Q 001442 462 --YLDGIVSKLLVLLQ 475 (1076)
Q Consensus 462 --~l~~ll~~l~~~l~ 475 (1076)
-...++|.+.++++
T Consensus 315 ~~~~k~il~~l~~~ir 330 (1312)
T KOG0803|consen 315 SLLKKGILPLLSNLIR 330 (1312)
T ss_pred chhccchhHHHHHHHh
Confidence 12355666666655
No 236
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=90.49 E-value=43 Score=42.52 Aligned_cols=73 Identities=16% Similarity=0.194 Sum_probs=52.0
Q ss_pred HHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhc
Q 001442 380 QVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSEN 453 (1076)
Q Consensus 380 ~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~aL~~l~~~ 453 (1076)
..+..+++.|+..+-.|...+|-+|-.++-....+-..-+-...++.+.+.++. ++..+...+..+|.+++..
T Consensus 530 NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhS-KhkMIa~GSaaALrNLln~ 602 (2195)
T KOG2122|consen 530 NCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHS-KHKMIAMGSAAALRNLLNF 602 (2195)
T ss_pred hHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhh-hhhhhhhhHHHHHHHHhcC
Confidence 467888888888877777777777777765443322111233567777888888 8888888999999999765
No 237
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=90.33 E-value=0.46 Score=32.93 Aligned_cols=30 Identities=23% Similarity=0.388 Sum_probs=27.2
Q ss_pred hHHHHHHhhccCCChhHHhhhhHHHHHHHh
Q 001442 885 TYLPFLLEACNDENQDVRQAAVYGLGVCAE 914 (1076)
Q Consensus 885 ~ll~~l~~~l~~~~~~vr~~a~~~lg~l~~ 914 (1076)
..+|.+++.++++++.++.+|+++++.++.
T Consensus 12 g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 12 GGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp THHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 468999999999999999999999999873
No 238
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=90.04 E-value=7.9 Score=41.91 Aligned_cols=189 Identities=12% Similarity=0.103 Sum_probs=84.1
Q ss_pred HhhhhcCCCCHHHHHHHHHHHHHHHHHhhhhhHhhHHhHHHHHHhhcc----CCChhHHhhhhHHHHHHHhhcCCCchHH
Q 001442 848 LTPMWGKDKTAEERRIAICIFDDVAEQCREAALKYYETYLPFLLEACN----DENQDVRQAAVYGLGVCAEFGGSVVKPL 923 (1076)
Q Consensus 848 l~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~----~~~~~vr~~a~~~lg~l~~~~~~~~~~~ 923 (1076)
+++.+ ...+......+..++..++...+.........+++.+++.+. .++..+...|+.+++.+...-. +...
T Consensus 110 fl~ll-~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~--~R~~ 186 (312)
T PF03224_consen 110 FLKLL-DRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKE--YRQV 186 (312)
T ss_dssp HHHH--S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHH--HHHH
T ss_pred HHHHh-cCCCHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcch--hHHH
Confidence 33444 344666777788999999888776544433455555555544 3455677888889999886543 1121
Q ss_pred H--HHHHHHHHHhhcCCC-CCChhhhhHHHHHHHHHHHHHhhcCCCC---CHhhHHHHHHhhCCCCCcHHHHHHHHHHHH
Q 001442 924 V--GEALSRLNVVIRHPN-ALQPENLMAYDNAVSALGKICQFHRDSI---DAAQVVPAWLNCLPIKGDLIEAKIVHEQLC 997 (1076)
Q Consensus 924 ~--~~il~~L~~~l~~~~-~~~~~~~~~~~na~~al~~i~~~~~~~~---~~~~~l~~~l~~lp~~~d~~e~~~~~~~l~ 997 (1076)
+ ...++.+.+++.... ..+..+..+.-+++-|+=-+. +.+..+ .-..++|.+...+.....+-..+.++..|-
T Consensus 187 f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLS-F~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~ 265 (312)
T PF03224_consen 187 FWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLS-FEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILR 265 (312)
T ss_dssp HHTHHHHHHHHHHHH---------HHHHHHHHHHHHHHHT-TSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHH
T ss_pred HHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHh-cCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHH
Confidence 1 445555555551100 000012333334443332221 111111 011256666555532222233445566666
Q ss_pred HHHhhcCCcccCcCcCchh-hHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 001442 998 SMVERSDSDLLGPNHQYLP-KIVSVFAEILCGKDLATEQTLSRIVNLL 1044 (1076)
Q Consensus 998 ~li~~~~~~~~~~~~~~l~-~i~~~~~~~l~~~~~~~~~~~~~~~~~l 1044 (1076)
.++...+...... .+. .++. ..+.|.+.++.++|+...+..+-
T Consensus 266 Nl~~~~~~~~~~~---mv~~~~l~-~l~~L~~rk~~Dedl~edl~~L~ 309 (312)
T PF03224_consen 266 NLLSKAPKSNIEL---MVLCGLLK-TLQNLSERKWSDEDLTEDLEFLK 309 (312)
T ss_dssp HTTSSSSTTHHHH---HHHH-HHH-HHHHHHSS--SSHHHHHHHHHHH
T ss_pred HHHhccHHHHHHH---HHHccHHH-HHHHHhcCCCCCHHHHHHHHHHH
Confidence 6664332222110 011 1122 22333345666777776665544
No 239
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=89.73 E-value=3.5 Score=38.73 Aligned_cols=119 Identities=16% Similarity=0.157 Sum_probs=71.2
Q ss_pred HHHHHHHHHcCCCcchHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhcH----------------HHHHHhHHHHHHHH
Q 001442 322 ECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCA----------------KVMVKNLEQVLSMV 385 (1076)
Q Consensus 322 ~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~----------------~~~~~~l~~i~~~l 385 (1076)
.++..++...-| .-.|.+++.+.+.+++ +......++..|..+.+... +.+....+.++..+
T Consensus 10 ~~l~~i~~~~~P-~~Wp~~l~~l~~~~~~-~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~~~~~~i~~~l 87 (148)
T PF08389_consen 10 QVLAEIAKRDWP-QQWPDFLEDLLQLLQS-SPQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALRSNSPDILEIL 87 (148)
T ss_dssp HHHHHHHHHHTT-TTSTTHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCh-hhCchHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455444321 2344444444444444 35556666666666655432 12334455666666
Q ss_pred HhhCCCCC----hhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHH
Q 001442 386 LNSFRDPH----PRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAV 447 (1076)
Q Consensus 386 ~~~l~d~~----~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~aL 447 (1076)
.+.+.... ..+...++.+++.+..+...... .-..+++.+++.+.+ +..+..|+.+|
T Consensus 88 ~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~~i--~~~~~l~~~~~~l~~---~~~~~~A~~cl 148 (148)
T PF08389_consen 88 SQILSQSSSEANEELVKAALKCLKSWISWIPIELI--INSNLLNLIFQLLQS---PELREAAAECL 148 (148)
T ss_dssp HHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HHHH--HSSSHHHHHHHHTTS---CCCHHHHHHHH
T ss_pred HHHHHhhccccHHHHHHHHHHHHHHHHHhCCHHHh--ccHHHHHHHHHHcCC---HHHHHHHHHhC
Confidence 66554322 78899999999999998876542 224599999999976 45588888775
No 240
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=89.70 E-value=9.7 Score=40.48 Aligned_cols=149 Identities=17% Similarity=0.194 Sum_probs=111.5
Q ss_pred cCCChhHHHHHHHHHHHHHh--hcHHHHHHhHHHHHHHHHhhCCCCC-hhHHHHHHHHHHHhhhhhchhHHhhhhhhhHH
Q 001442 349 AAPEWQKHHAALIALAQIAE--GCAKVMVKNLEQVLSMVLNSFRDPH-PRVRWAAINAIGQLSTDLGPDLQNQFHPQVLP 425 (1076)
Q Consensus 349 ~~~~~~~r~aal~~l~~l~~--~~~~~~~~~l~~i~~~l~~~l~d~~-~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~ 425 (1076)
+.++|..-.+++.-|..... .......++-..+...+.++|+-.= .-|-..|+.+...+.+.++++-....+.-..|
T Consensus 21 ~~~EWAD~is~L~kL~k~lq~~~~~~~~IP~k~~v~krLaqCL~P~LPsGVH~KaLevY~~IF~~ig~~~L~~dl~i~~~ 100 (307)
T PF04118_consen 21 SSSEWADYISFLGKLLKALQNSNNQFPYIPHKLQVSKRLAQCLNPALPSGVHQKALEVYEYIFERIGPDGLAQDLPIYSP 100 (307)
T ss_pred hhhhHHHHHHHHHHHHHHHhccCCCCceeCcHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcCHHHHHhhcHHHHH
Confidence 35678877777666665555 1111112333345667777775433 35777889999999888887665667777788
Q ss_pred HHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHhHhh
Q 001442 426 ALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEH 499 (1076)
Q Consensus 426 ~l~~~l~~~~~~~v~~~a~~aL~~l~~~~~~~~l~~~l~~ll~~l~~~l~~~~~~v~~~al~ai~~l~~~~~~~ 499 (1076)
.++..+.. ....||-.-...+..+.-.+++ .+.|.++.++..++..+++.+.++.+.++..+..+...++..
T Consensus 101 GLfpl~~~-asi~Vkp~lL~i~e~~~lpL~~-~L~p~l~~li~slLpGLede~sE~~~~~~~ll~~l~~~v~~~ 172 (307)
T PF04118_consen 101 GLFPLFSY-ASIQVKPQLLDIYEKYYLPLGP-ALRPCLKGLILSLLPGLEDEGSEFFDRTLKLLDKLKEAVGDK 172 (307)
T ss_pred HHHHHHHH-HHHhhHHHHHHHHHHHhcCccH-HHHHHHHHHHHHhccccccCCchHHHHHHHHHHHHHHhcChh
Confidence 88888877 6678888888888888877776 588999999999999999999999999999999999988876
No 241
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=89.57 E-value=52 Score=39.83 Aligned_cols=126 Identities=16% Similarity=0.191 Sum_probs=72.9
Q ss_pred CcchHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCC---ChhHHHHHHHHHHHhhhh
Q 001442 334 NTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDP---HPRVRWAAINAIGQLSTD 410 (1076)
Q Consensus 334 ~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~---~~~vr~~a~~~l~~l~~~ 410 (1076)
+.+.+.+.+.+.......+...+..++.+||.+.. +..++.+.+.+.+. ...+|.+|++++.+++..
T Consensus 485 ~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~----------~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~ 554 (618)
T PF01347_consen 485 EKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH----------PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKH 554 (618)
T ss_dssp GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-----------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT
T ss_pred HHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC----------chhhHHHHhHhhhccccchHHHHHHHHHHHHHhhc
Confidence 34566666666666667788899999999998753 23455666666555 789999999999988655
Q ss_pred hchhHHhhhhhhhHHHHHhhccCC-CChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhh-cCchhHHHHHHH
Q 001442 411 LGPDLQNQFHPQVLPALAGAMDDF-QNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQ-NGKQMVQEGALT 487 (1076)
Q Consensus 411 ~~~~~~~~~~~~ll~~l~~~l~~~-~~~~v~~~a~~aL~~l~~~~~~~~l~~~l~~ll~~l~~~l~-~~~~~v~~~al~ 487 (1076)
.+. .+.+.++..+.+. .++.+|.+|+..|.. .-+ . ..++..+...+. .++..|.....+
T Consensus 555 ~~~--------~v~~~l~~I~~n~~e~~EvRiaA~~~lm~---~~P-~------~~~l~~i~~~l~~E~~~QV~sfv~S 615 (618)
T PF01347_consen 555 CPE--------KVREILLPIFMNTTEDPEVRIAAYLILMR---CNP-S------PSVLQRIAQSLWNEPSNQVASFVYS 615 (618)
T ss_dssp -HH--------HHHHHHHHHHH-TTS-HHHHHHHHHHHHH---T----------HHHHHHHHHHHTT-S-HHHHHHHHH
T ss_pred CcH--------HHHHHHHHHhcCCCCChhHHHHHHHHHHh---cCC-C------HHHHHHHHHHHhhCchHHHHHHHHH
Confidence 432 2333334433331 246789888766443 212 1 234555555554 344555544443
No 242
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=89.27 E-value=5.2 Score=36.72 Aligned_cols=78 Identities=18% Similarity=0.277 Sum_probs=61.0
Q ss_pred HHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhh-hhHHHHHhhccC--CCChhHHHHHHHHHHHhhhcCC
Q 001442 379 EQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHP-QVLPALAGAMDD--FQNPRVQAHAASAVLNFSENCT 455 (1076)
Q Consensus 379 ~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~-~ll~~l~~~l~~--~~~~~v~~~a~~aL~~l~~~~~ 455 (1076)
...+..|...+.+++|.++..|+..+..++..+++.+...+.. ..+..+.+.+.. ..++.|+..+...+......++
T Consensus 36 k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f~ 115 (133)
T cd03561 36 KEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESFG 115 (133)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 3567788888999999999999999999999998866444443 555556666654 2577899999999999988776
Q ss_pred c
Q 001442 456 P 456 (1076)
Q Consensus 456 ~ 456 (1076)
.
T Consensus 116 ~ 116 (133)
T cd03561 116 G 116 (133)
T ss_pred C
Confidence 4
No 243
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=89.26 E-value=5.9 Score=39.10 Aligned_cols=118 Identities=11% Similarity=0.148 Sum_probs=70.8
Q ss_pred HHhhcCchhHHHHHHHHHHHHHHHhHhhHHhhHhhhHHHHHHHHhccCCchhhhhHHHHHHHHHHHHHHhchhhhhhhHH
Q 001442 472 VLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAK 551 (1076)
Q Consensus 472 ~~l~~~~~~v~~~al~ai~~l~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~g~~~~~~~~~ 551 (1076)
..++-.-...-..++..++.+....|....|++..++..+-+.-.+ +....|..+=+|+|...+++|++.|...
T Consensus 7 ~~L~~~y~~aw~~vl~v~s~lf~~lg~~~~~~l~~~L~~l~~lr~~----~~f~~~~~~e~~lgaAi~amGpe~vL~~-- 80 (198)
T PF08161_consen 7 SLLSYRYQHAWPEVLNVLSALFEKLGERSSPLLKPILKTLGDLRES----EDFSFRKELEQVLGAAIRAMGPEQVLSI-- 80 (198)
T ss_pred HHhCcchHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHcC----CCcchHHHHHHHHHHHHHHCCHHHHHHH--
Confidence 3443334456677899999999999988777777777766665332 2256788888999999999998765432
Q ss_pred HHHHHHHHHhcCCCCCCChhhHHHHHHHHHHHHHhccCcccchhhhhHHHHH
Q 001442 552 QVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQ 603 (1076)
Q Consensus 552 ~ii~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~i~~~ll~ 603 (1076)
+++-+ .. -+..++-|..++-.+..-. .+..+.-|...++|..-.
T Consensus 81 --lPLnl--~~--~~~~~~~raWLLPlLr~~i--~~~~L~fF~~~~lPla~~ 124 (198)
T PF08161_consen 81 --LPLNL--DN--ADDSQPGRAWLLPLLRDHI--RNASLSFFVEEFLPLARR 124 (198)
T ss_pred --CCCCc--cC--CCcCCcccchhHHHHHHhc--cCCChHHHHHHHHHHHHH
Confidence 22111 00 0112234444444443321 245566666666665543
No 244
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=89.24 E-value=27 Score=35.43 Aligned_cols=113 Identities=22% Similarity=0.328 Sum_probs=79.9
Q ss_pred hhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhcc
Q 001442 353 WQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMD 432 (1076)
Q Consensus 353 ~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~ 432 (1076)
-..|+.|++.|..+.. +.-+..+..++.++++..|..+..++|++-. +.-+|.+.+.|.
T Consensus 170 l~~Ry~amF~LRn~g~----------EeaI~al~~~l~~~SalfrhEvAfVfGQl~s-----------~~ai~~L~k~L~ 228 (289)
T KOG0567|consen 170 LFERYRAMFYLRNIGT----------EEAINALIDGLADDSALFRHEVAFVFGQLQS-----------PAAIPSLIKVLL 228 (289)
T ss_pred HHHHHhhhhHhhccCc----------HHHHHHHHHhcccchHHHHHHHHHHHhhccc-----------hhhhHHHHHHHH
Confidence 3567777777765422 2345677788888899999999999999753 234455555555
Q ss_pred CC-CChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHhH
Q 001442 433 DF-QNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQ 497 (1076)
Q Consensus 433 ~~-~~~~v~~~a~~aL~~l~~~~~~~~l~~~l~~ll~~l~~~l~~~~~~v~~~al~ai~~l~~~~~ 497 (1076)
+. .++-||..|..||+.+.+ +..++.|...+.++.+-+++.+..++...-..-+
T Consensus 229 d~~E~pMVRhEaAeALGaIa~-----------e~~~~vL~e~~~D~~~vv~esc~valdm~eyens 283 (289)
T KOG0567|consen 229 DETEHPMVRHEAAEALGAIAD-----------EDCVEVLKEYLGDEERVVRESCEVALDMLEYENS 283 (289)
T ss_pred hhhcchHHHHHHHHHHHhhcC-----------HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHhcc
Confidence 42 468899999999988753 3456777788888888888888887776544333
No 245
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=89.24 E-value=56 Score=39.06 Aligned_cols=99 Identities=15% Similarity=0.119 Sum_probs=58.2
Q ss_pred chHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhH
Q 001442 336 IVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDL 415 (1076)
Q Consensus 336 ~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~ 415 (1076)
+++.+...+.+..+..+...+...+.+||.+..... +..+.+.+. +-....+.+|.+|+++|.+++...+..+
T Consensus 443 ~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~~~~------i~~l~~~l~-~~~~~~~~iR~~Av~Alr~~a~~~p~~v 515 (574)
T smart00638 443 LLKYLHELLQQAVSKGDEEEIQLYLKALGNAGHPSS------IKVLEPYLE-GAEPLSTFIRLAAILALRNLAKRDPRKV 515 (574)
T ss_pred HHHHHHHHHHHHHhcCCchheeeHHHhhhccCChhH------HHHHHHhcC-CCCCCCHHHHHHHHHHHHHHHHhCchHH
Confidence 334444444444455666778889999998754211 122233332 2334567999999999999876554322
Q ss_pred HhhhhhhhHHHHHhhccCC-CChhHHHHHHHHHHH
Q 001442 416 QNQFHPQVLPALAGAMDDF-QNPRVQAHAASAVLN 449 (1076)
Q Consensus 416 ~~~~~~~ll~~l~~~l~~~-~~~~v~~~a~~aL~~ 449 (1076)
-+.++..+.+. .++.+|.+|+..|..
T Consensus 516 --------~~~l~~i~~n~~e~~EvRiaA~~~lm~ 542 (574)
T smart00638 516 --------QEVLLPIYLNRAEPPEVRMAAVLVLME 542 (574)
T ss_pred --------HHHHHHHHcCCCCChHHHHHHHHHHHh
Confidence 23333333331 357899888777543
No 246
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=88.54 E-value=3.5 Score=35.69 Aligned_cols=62 Identities=10% Similarity=0.152 Sum_probs=55.2
Q ss_pred HHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccC
Q 001442 372 KVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDD 433 (1076)
Q Consensus 372 ~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~ 433 (1076)
+.+.++++.++..+..++.+-.+.||..+...|.-+.+..++.....++..+++..+..+.-
T Consensus 3 ~~l~p~~~~l~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~p~~~~~~~~~kil~~f~~ll~~ 64 (102)
T PF12333_consen 3 ELLSPFFPLLMLYISSAMTHISPDIREDSLKFLDLLLEHAPDELCSGGWVKILPNFLDLLGW 64 (102)
T ss_pred HHHHhHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHCChHhHhhhHHHHHHHHHHHHCC
Confidence 45678999999999999999999999999999999999998884468888999998888876
No 247
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=88.52 E-value=0.87 Score=31.54 Aligned_cols=29 Identities=24% Similarity=0.416 Sum_probs=26.5
Q ss_pred HHHHHHHhhCCCCChhHHHHHHHHHHHhh
Q 001442 380 QVLSMVLNSFRDPHPRVRWAAINAIGQLS 408 (1076)
Q Consensus 380 ~i~~~l~~~l~d~~~~vr~~a~~~l~~l~ 408 (1076)
..+|.++..+.++++.||..|+|+|+.++
T Consensus 12 g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 12 GGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp THHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 36889999999999999999999999886
No 248
>KOG1877 consensus Putative transmembrane protein cmp44E [General function prediction only]
Probab=88.38 E-value=42 Score=40.24 Aligned_cols=97 Identities=16% Similarity=0.215 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHHhhhcccccHHHHHHHhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Q 001442 651 ATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFI 730 (1076)
Q Consensus 651 ~~A~~~l~~i~~~~~~~~~p~l~~~~~~l~~~l~~~~~~~vr~~a~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~i 730 (1076)
..|+.+...+..+|++++..|...++..+.++|+.. +++++..++.++..++... +..+.+... ++.+
T Consensus 74 ~Iamea~~kLL~~C~eq~n~F~ssfL~mv~~LLes~-~~~~~ilg~~sf~~F~~i~----------~d~~sy~~~-yd~F 141 (819)
T KOG1877|consen 74 KIAMEAYDKLLQACKEQINLFVSSFLRMVQKLLESN-NDEMQILGTNSFVKFANIE----------EDGPSYHRN-YDFF 141 (819)
T ss_pred hhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcC-CCceeeehhhHHHHHHhhc----------ccCchhhhh-hHHH
Confidence 357888899999999999888899999999999987 8899999999988777543 333344433 4555
Q ss_pred HHHHHHHHccCCcHH----HHHHHHHHHHHHHH
Q 001442 731 IPALVEALHKEPDTE----ICASMLDSLNECIQ 759 (1076)
Q Consensus 731 ~~~l~~~l~~~~~~~----~~~~~l~~l~~~i~ 759 (1076)
++++.+...+.++.+ ++.+-++++..++.
T Consensus 142 i~kf~~l~he~~~~~~~~~lr~agl~gLsa~v~ 174 (819)
T KOG1877|consen 142 ISKFSSLCHERGDDDMKDCLRAAGLQGLSAVVW 174 (819)
T ss_pred HHHHHHHhhcccchhhhhhccHhhhhhHHHHHH
Confidence 666666655543333 33344555655543
No 249
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=87.85 E-value=37 Score=37.55 Aligned_cols=229 Identities=18% Similarity=0.269 Sum_probs=122.5
Q ss_pred CCcchhHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhCCcchHhHHhh-hHHHH-HHHHHHHHhCCCHHHHHHHHHH
Q 001442 139 NGWPELLPFMFQCVSSDSVKLQESAFLIFAQLIINFIQCLTSSADRDRFQD-LLPLM-MRTLTESLNNGNEATAQEALEL 216 (1076)
Q Consensus 139 ~~w~~ll~~l~~~~~~~~~~~r~~al~~L~~l~~~~~~~l~~~~~~~~~~~-l~p~~-l~~l~~~~~~~~~~~~~~~~~~ 216 (1076)
-.|..+.+.++..+-+++..+|.+|++++.+++.. ......+.. -++.+ ...+.. .......|..|++.
T Consensus 21 ~~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d-------~~~l~~~~~l~id~~ii~SL~~--~~~~~~ER~QALkl 91 (371)
T PF14664_consen 21 LVLSFFGERIQCMLLSDSKEVRAAGYRILRYLISD-------EESLQILLKLHIDIFIIRSLDR--DNKNDVEREQALKL 91 (371)
T ss_pred hhHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcC-------HHHHHHHHHcCCchhhHhhhcc--cCCChHHHHHHHHH
Confidence 36888888888766666699999999999776322 111111111 12222 122211 12356678899999
Q ss_pred HHHHHcc--CcHHHHHhHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHhhcccchhhccchhhHHHHHHHHHHhhcC
Q 001442 217 LIELAGT--EPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLD 294 (1076)
Q Consensus 217 l~~l~~~--~~~~~~~~l~~l~~~l~~~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~ 294 (1076)
+..+.+. .+..+ -..++..+..+.++ .++..|..|++.+..++- ..|.++.... -+..+...+.+
T Consensus 92 iR~~l~~~~~~~~~---~~~vvralvaiae~--~~D~lr~~cletL~El~l---~~P~lv~~~g-----G~~~L~~~l~d 158 (371)
T PF14664_consen 92 IRAFLEIKKGPKEI---PRGVVRALVAIAEH--EDDRLRRICLETLCELAL---LNPELVAECG-----GIRVLLRALID 158 (371)
T ss_pred HHHHHHhcCCcccC---CHHHHHHHHHHHhC--CchHHHHHHHHHHHHHHh---hCHHHHHHcC-----CHHHHHHHHHh
Confidence 8888876 22222 24677777777765 578899999999998876 3555432211 11222222211
Q ss_pred CCCCccccCCCCCCcccCCCCchhhHHHHHHHHHHHcCCC---------cchHHHHHHHHHhh---cCCCh--hHHHHHH
Q 001442 295 IEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGN---------TIVPVASEQLPAYL---AAPEW--QKHHAAL 360 (1076)
Q Consensus 295 ~~dd~~~~~~~~e~~d~~e~~~~~~a~~~l~~l~~~~~~~---------~~~~~l~~~l~~~l---~~~~~--~~r~aal 360 (1076)
. .+..+..++..+...+... .-+..++.-+.+.- ...+- ..-.++.
T Consensus 159 ~--------------------~~~~~~~l~~~lL~lLd~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~ 218 (371)
T PF14664_consen 159 G--------------------SFSISESLLDTLLYLLDSPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASA 218 (371)
T ss_pred c--------------------cHhHHHHHHHHHHHHhCCcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHH
Confidence 0 1112222333332222110 11122222222220 11122 2345666
Q ss_pred HHHHHHHhhcHHHHH---HhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhh
Q 001442 361 IALAQIAEGCAKVMV---KNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTD 410 (1076)
Q Consensus 361 ~~l~~l~~~~~~~~~---~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~ 410 (1076)
.++..+....++.+. +.+ +-+..++..|.-|++.+|......+-.+...
T Consensus 219 ~ai~~~LrsW~GLl~l~~~~~-~~lksLv~~L~~p~~~ir~~Ildll~dllri 270 (371)
T PF14664_consen 219 KAISTLLRSWPGLLYLSMNDF-RGLKSLVDSLRLPNPEIRKAILDLLFDLLRI 270 (371)
T ss_pred HHHHHHHhcCCceeeeecCCc-hHHHHHHHHHcCCCHHHHHHHHHHHHHHHCC
Confidence 777777766554321 111 3456677777889999999988777766653
No 250
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=87.82 E-value=2.1 Score=37.63 Aligned_cols=69 Identities=12% Similarity=0.193 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhcccCCC--Cc--chhHHHHHHhhcCCCHHHHHHHHHHHHHHH
Q 001442 102 SSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPEN--GW--PELLPFMFQCVSSDSVKLQESAFLIFAQLI 171 (1076)
Q Consensus 102 ~~lk~~Ll~~l~~~~~~~vr~~~~~~i~~ia~~~~~~~--~w--~~ll~~l~~~~~~~~~~~r~~al~~L~~l~ 171 (1076)
-.+...|++.|....++.+...+|.-||.++++. |.+ -. -..-..+++++.++++.+|.-|+.+++.++
T Consensus 42 ~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~-p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 42 FELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHY-PNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp GHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH--GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHccCCCcceeehhhcchHHHHHHC-hhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 3566778888865568888889999999999964 543 11 123467899999999999999999998774
No 251
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=87.48 E-value=6.4 Score=36.57 Aligned_cols=94 Identities=15% Similarity=0.173 Sum_probs=67.6
Q ss_pred hhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhcHHHHHHhH--HHHHHHHHhhCCC-CC
Q 001442 317 YSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNL--EQVLSMVLNSFRD-PH 393 (1076)
Q Consensus 317 ~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l--~~i~~~l~~~l~d-~~ 393 (1076)
|....++-|.+-.. ..--...+..+..-+++.++++..-|+..|..++++|+..+...+ ..++..+...+.+ .+
T Consensus 18 w~~il~icD~I~~~---~~~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~ 94 (144)
T cd03568 18 WGLILDVCDKVKSD---ENGAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVH 94 (144)
T ss_pred HHHHHHHHHHHhcC---CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCC
Confidence 44444455555432 112234566677778889999999999999999999997655443 2566667666666 78
Q ss_pred hhHHHHHHHHHHHhhhhhch
Q 001442 394 PRVRWAAINAIGQLSTDLGP 413 (1076)
Q Consensus 394 ~~vr~~a~~~l~~l~~~~~~ 413 (1076)
+.|+..++..+..++..++.
T Consensus 95 ~~Vk~kil~li~~W~~~f~~ 114 (144)
T cd03568 95 PTVKEKLREVVKQWADEFKN 114 (144)
T ss_pred HHHHHHHHHHHHHHHHHhCC
Confidence 99999999999999988864
No 252
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=87.28 E-value=15 Score=34.15 Aligned_cols=92 Identities=16% Similarity=0.155 Sum_probs=66.3
Q ss_pred hHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHhHhhHHhhH--hhhHHHHHHHHhccCCchhhhhHHHHHHHHHHHHHH
Q 001442 463 LDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYY--DAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMA 540 (1076)
Q Consensus 463 l~~ll~~l~~~l~~~~~~v~~~al~ai~~l~~~~~~~~~~~~--~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~i~~~ 540 (1076)
-...+..|.+-+.+.++.+...++..+.+++..+|..|...+ ..++..|..++... .+..++.++++.+...+.+
T Consensus 35 ~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~---~~~~Vk~kil~li~~W~~~ 111 (144)
T cd03568 35 AKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDR---VHPTVKEKLREVVKQWADE 111 (144)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhccc---CCHHHHHHHHHHHHHHHHH
Confidence 356788888889999999999999999999999999886444 35667777766543 4556888888888888877
Q ss_pred hchhhhhhhHHHHHHHH
Q 001442 541 VGKDKFRDDAKQVMEVL 557 (1076)
Q Consensus 541 ~g~~~~~~~~~~ii~~l 557 (1076)
+..+.-.+++.++++.+
T Consensus 112 f~~~~~l~~i~~~y~~L 128 (144)
T cd03568 112 FKNDPSLSLMSDLYKKL 128 (144)
T ss_pred hCCCcccHHHHHHHHHH
Confidence 76332223334444433
No 253
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.27 E-value=37 Score=42.78 Aligned_cols=55 Identities=20% Similarity=0.203 Sum_probs=43.4
Q ss_pred hHHhHHHHHHhhccCCChhHHhhhhHHHHHHHhhcCCCchH--HHHHHHHHHHHhhc
Q 001442 882 YYETYLPFLLEACNDENQDVRQAAVYGLGVCAEFGGSVVKP--LVGEALSRLNVVIR 936 (1076)
Q Consensus 882 ~~~~ll~~l~~~l~~~~~~vr~~a~~~lg~l~~~~~~~~~~--~~~~il~~L~~~l~ 936 (1076)
.+--++..+.+++.|+-++||+.|+..+=++....+..+.+ +-.-+++.+.++|.
T Consensus 994 lwi~ll~~L~~~~~dsr~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd 1050 (1610)
T KOG1848|consen 994 LWIMLLVHLADLCEDSRAEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLD 1050 (1610)
T ss_pred HHHHHHHHHHHHhccchHHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhc
Confidence 34455566777788889999999999999999888877766 66667777788776
No 254
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=87.24 E-value=10 Score=35.23 Aligned_cols=78 Identities=9% Similarity=0.185 Sum_probs=61.0
Q ss_pred HHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhh-hhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCc
Q 001442 379 EQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQF-HPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTP 456 (1076)
Q Consensus 379 ~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~-~~~ll~~l~~~l~~~~~~~v~~~a~~aL~~l~~~~~~ 456 (1076)
...+..|.+.+.+++|.+...|+..+..+++.++..+...+ -..++..+...+.+..++.|+..+...+......+..
T Consensus 40 k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~ 118 (142)
T cd03569 40 KYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAFRN 118 (142)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHhCC
Confidence 35677888899999999999999999999999887663332 2355666666665446789999999999999888764
No 255
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=87.15 E-value=35 Score=34.22 Aligned_cols=209 Identities=15% Similarity=0.178 Sum_probs=119.9
Q ss_pred CcccCchhhHhhHHhh----cCCChHHHHHHHHHhcCCChHHHHHHHHHHHHhhhcCch---------HHHHHHHHHHcc
Q 001442 1 MAAESTHLQQSQLAVI----LGPDSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPD---------SLTLKLAHLLQR 67 (1076)
Q Consensus 1 ~~~~~~~~~~~~~~~~----~~~~~~~l~~lL~~~~s~d~~~r~~Ae~~L~~~~~~~p~---------~~~~~L~~il~~ 67 (1076)
||.-|.|...-+..+- -..+.+.+.+.+..+.+| +.|..|-.+|-+-.+..|+ +...+|++-+.+
T Consensus 1 M~~~p~p~~s~~~~~~~p~~~~~~~dk~~~~i~~l~~~--p~rE~aL~ELskkre~~~dlA~~lW~s~g~~~~LLqEiva 78 (293)
T KOG3036|consen 1 MANLPSPAMSKQQQTPSPGSNASNNDKAYQLILSLVSP--PTREMALLELSKKREPFPDLAPMLWHSFGTMVALLQEIVA 78 (293)
T ss_pred CCCCCCCccchhccCCCCCcccccccchhhHHHHhhCC--chHHHHHHHHHHhccCCccccHHHHHhcchHHHHHHHHHh
Confidence 6777765554443320 013445677777777666 4566666666443332232 122334432221
Q ss_pred ----------CCCHHHHHHHHHHHHHhcccCCCCcccCCCHhHHH-HHHHHH----HHHHh----hcchhhHHHHHHHHH
Q 001442 68 ----------SPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQS-SLKSML----LQSIQ----LESAKSISKKLCDTV 128 (1076)
Q Consensus 68 ----------~~~~~~R~~a~v~Lk~~i~~~~~~~w~~l~~~~~~-~lk~~L----l~~l~----~~~~~~vr~~~~~~i 128 (1076)
+....-|-.-+..|-+.+..+ |++|. .++..+ ...|. +-+..-+|-..--+|
T Consensus 79 iYp~l~p~~l~~~qsnRVcnaL~LlQcvASH---------pdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVI 149 (293)
T KOG3036|consen 79 IYPSLSPPTLTPAQSNRVCNALALLQCVASH---------PDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVI 149 (293)
T ss_pred cccccCCCCCCccccchHHHHHHHHHHHhcC---------cchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHH
Confidence 344667888888888888876 33433 333332 22232 123455899999999
Q ss_pred HHHHhcccCC----CCcchhHHHHHHhhcCCCHHHHHHHHHHHHHHHHHH--HHhhCCcchHhHHhhhHHHHHH-HHHHH
Q 001442 129 SELASNILPE----NGWPELLPFMFQCVSSDSVKLQESAFLIFAQLIINF--IQCLTSSADRDRFQDLLPLMMR-TLTES 201 (1076)
Q Consensus 129 ~~ia~~~~~~----~~w~~ll~~l~~~~~~~~~~~r~~al~~L~~l~~~~--~~~l~~~~~~~~~~~l~p~~l~-~l~~~ 201 (1076)
|.+++.+-.. -.|.|++|..+..+.++++..+..|..+++.|+..= +.++.. ..+.|.. +..+++ .+.+.
T Consensus 150 gaLvk~dd~eVi~fLl~TeIVPlCLrime~GSelSKtvA~fIlqKIlldD~GL~YiCq--t~eRF~a-v~~~L~kmv~~l 226 (293)
T KOG3036|consen 150 GALVKNDDQEVIRFLLTTEIVPLCLRIMESGSELSKTVATFILQKILLDDVGLYYICQ--TAERFSA-VALVLGKMVFQL 226 (293)
T ss_pred HHHHhcCcHHHHHHHHHhhhHHHHHHHHhcccHHHHHHHHHHHHHHhhccccHHHHHH--hHHHHHH-HHHHHHHHHHHH
Confidence 9999865321 157899999999999999988999999988873110 000000 0122322 222222 23344
Q ss_pred HhCCCHHHHHHHHHHHHHHHcc
Q 001442 202 LNNGNEATAQEALELLIELAGT 223 (1076)
Q Consensus 202 ~~~~~~~~~~~~~~~l~~l~~~ 223 (1076)
.+.++....+.+++|...+.++
T Consensus 227 ~~~ps~RllKhviRcYlrLsdn 248 (293)
T KOG3036|consen 227 VSMPSPRLLKHVIRCYLRLSDN 248 (293)
T ss_pred hcCCCHHHHHHHHHHHHHhcCC
Confidence 4566777777788887777654
No 256
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=86.99 E-value=19 Score=38.92 Aligned_cols=138 Identities=14% Similarity=0.151 Sum_probs=73.4
Q ss_pred chhhHHHHHHHHHHHcCCC------cchHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhcHH--HHHHhHHHHHHHHHh
Q 001442 316 NYSVGQECLDRLAIALGGN------TIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAK--VMVKNLEQVLSMVLN 387 (1076)
Q Consensus 316 ~~~~a~~~l~~l~~~~~~~------~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~--~~~~~l~~i~~~l~~ 387 (1076)
....+..++..+....+.. ..++.++..+...+++++-.....++.+|+.+...-.- .+-. ...++.+.+
T Consensus 121 i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~--~~~v~~l~~ 198 (312)
T PF03224_consen 121 IQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWK--SNGVSPLFD 198 (312)
T ss_dssp HHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHT--HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHh--cCcHHHHHH
Confidence 3445777777777654421 23344444444444444555668899999988754321 1111 233444444
Q ss_pred hC-------CCCChhHHHHHHHHHHHhhhhhchhHHhh-hhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcc
Q 001442 388 SF-------RDPHPRVRWAAINAIGQLSTDLGPDLQNQ-FHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPE 457 (1076)
Q Consensus 388 ~l-------~d~~~~vr~~a~~~l~~l~~~~~~~~~~~-~~~~ll~~l~~~l~~~~~~~v~~~a~~aL~~l~~~~~~~ 457 (1076)
.+ +..+..+.+.++.|+=.++ +.+.+... ....++|.+...+++.....|..-++.+|.++++.....
T Consensus 199 iL~~~~~~~~~~~~Ql~Y~~ll~lWlLS--F~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~ 274 (312)
T PF03224_consen 199 ILRKQATNSNSSGIQLQYQALLCLWLLS--FEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKS 274 (312)
T ss_dssp HHH---------HHHHHHHHHHHHHHHT--TSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTT
T ss_pred HHHhhcccCCCCchhHHHHHHHHHHHHh--cCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHH
Confidence 44 2234566666665554433 22222111 122389999988887566777788889999998776543
No 257
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=86.86 E-value=17 Score=33.26 Aligned_cols=79 Identities=18% Similarity=0.100 Sum_probs=60.8
Q ss_pred hHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHhHhhHHhhH--hhhHHHHHHHHhccCCchhhhhHHHHHHHHHHHHHH
Q 001442 463 LDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYY--DAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMA 540 (1076)
Q Consensus 463 l~~ll~~l~~~l~~~~~~v~~~al~ai~~l~~~~~~~~~~~~--~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~i~~~ 540 (1076)
-...+..|.+-++++++.+...++..+..++..+|..|...+ ..++..|..++....+ ...++.++++.+...+.+
T Consensus 35 ~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~--~~~Vk~kil~li~~W~~~ 112 (133)
T smart00288 35 PKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYP--LPLVKKRILELIQEWADA 112 (133)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCC--cHHHHHHHHHHHHHHHHH
Confidence 356788888899999999999999999999999999886544 3477777776654322 223888888888888877
Q ss_pred hch
Q 001442 541 VGK 543 (1076)
Q Consensus 541 ~g~ 543 (1076)
+..
T Consensus 113 f~~ 115 (133)
T smart00288 113 FKN 115 (133)
T ss_pred HcC
Confidence 753
No 258
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=86.47 E-value=40 Score=40.83 Aligned_cols=124 Identities=13% Similarity=0.128 Sum_probs=69.2
Q ss_pred chhhHHHHHHHHHHHHHhcccCCC------------CcchhHHHHHHhh----cCCCHHHHHHHHHHHHHHHHHHHHhhC
Q 001442 116 SAKSISKKLCDTVSELASNILPEN------------GWPELLPFMFQCV----SSDSVKLQESAFLIFAQLIINFIQCLT 179 (1076)
Q Consensus 116 ~~~~vr~~~~~~i~~ia~~~~~~~------------~w~~ll~~l~~~~----~~~~~~~r~~al~~L~~l~~~~~~~l~ 179 (1076)
.++.++..+...++.++....... .-..+++.+...+ ..++...+..++++|+.+ .
T Consensus 447 ~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~--------g 518 (618)
T PF01347_consen 447 NSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNL--------G 518 (618)
T ss_dssp T-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHH--------T
T ss_pred CChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhcc--------C
Confidence 456788889999999988654421 1123444444433 345556677777777654 1
Q ss_pred CcchHhHHhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccCcHHHHHhHHHHHHHHHHHhcCCCcchhHHHHHHHH
Q 001442 180 SSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEF 259 (1076)
Q Consensus 180 ~~~~~~~~~~l~p~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~r~~al~~ 259 (1076)
. ...++.+...+... ......+|..|+.+|..++...+.. +.+.++.+..|...+.++|..|+..
T Consensus 519 ~-------~~~i~~l~~~i~~~-~~~~~~~R~~Ai~Alr~~~~~~~~~-------v~~~l~~I~~n~~e~~EvRiaA~~~ 583 (618)
T PF01347_consen 519 H-------PESIPVLLPYIEGK-EEVPHFIRVAAIQALRRLAKHCPEK-------VREILLPIFMNTTEDPEVRIAAYLI 583 (618)
T ss_dssp --------GGGHHHHHTTSTTS-S-S-HHHHHHHHHTTTTGGGT-HHH-------HHHHHHHHHH-TTS-HHHHHHHHHH
T ss_pred C-------chhhHHHHhHhhhc-cccchHHHHHHHHHHHHHhhcCcHH-------HHHHHHHHhcCCCCChhHHHHHHHH
Confidence 0 12233333322110 0225678889999988877666544 4445566666666778899998755
Q ss_pred HHH
Q 001442 260 VIT 262 (1076)
Q Consensus 260 l~~ 262 (1076)
+..
T Consensus 584 lm~ 586 (618)
T PF01347_consen 584 LMR 586 (618)
T ss_dssp HHH
T ss_pred HHh
Confidence 444
No 259
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=86.46 E-value=17 Score=36.37 Aligned_cols=71 Identities=10% Similarity=0.148 Sum_probs=53.8
Q ss_pred HHHhHhhhhcCCCCHHHHHHHHHHHHHHHHHhhhhhHhhH--HhHHHHHHhhccCCChhHHhhhhHHHHHHHh
Q 001442 844 LSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREAALKYY--ETYLPFLLEACNDENQDVRQAAVYGLGVCAE 914 (1076)
Q Consensus 844 l~~~l~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~--~~ll~~l~~~l~~~~~~vr~~a~~~lg~l~~ 914 (1076)
+.|++....+.....-.|-.++|+++.+++.....+..|+ ..++|..++.+..++..-+..|++-++.+.-
T Consensus 125 lYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrime~GSelSKtvA~fIlqKIll 197 (293)
T KOG3036|consen 125 LYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIMESGSELSKTVATFILQKILL 197 (293)
T ss_pred hHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhcccHHHHHHHHHHHHHHhh
Confidence 4444443332233345799999999999999877776654 7899999999999888888889888887764
No 260
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=86.41 E-value=27 Score=33.68 Aligned_cols=109 Identities=16% Similarity=0.223 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCcchHhHHhhhH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccCcHHHHHhHHHH
Q 001442 157 VKLQESAFLIFAQLIINFIQCLTSSADRDRFQDLL-PLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDV 235 (1076)
Q Consensus 157 ~~~r~~al~~L~~l~~~~~~~l~~~~~~~~~~~l~-p~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l 235 (1076)
...|..++.++..++......+.+......+..++ ..+...+.+...+.+..+...+++++..+.......++..+..+
T Consensus 36 ~~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~~~Lk~ele~~ 115 (168)
T PF12783_consen 36 ERSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFRSHLKLELEVF 115 (168)
T ss_pred HHHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567788888777554433332111011222222 23344444444455688899999999999988888888888888
Q ss_pred HHHHHH-HhcCCCcchhHHHHHHHHHHHHHH
Q 001442 236 VGSMLQ-IAEAESLEEGTRHLAIEFVITLAE 265 (1076)
Q Consensus 236 ~~~l~~-~~~~~~~~~~~r~~al~~l~~l~~ 265 (1076)
+..++. +++.+...-.-|..++|++..+++
T Consensus 116 l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~ 146 (168)
T PF12783_consen 116 LSHIILRILESDNSSLWQKELALEILRELCK 146 (168)
T ss_pred HHHHHHHHHccCCCcHHHHHHHHHHHHHHHh
Confidence 888777 555433334578889999999988
No 261
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.21 E-value=59 Score=35.90 Aligned_cols=92 Identities=13% Similarity=0.159 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCC
Q 001442 357 HAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQN 436 (1076)
Q Consensus 357 ~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~ 436 (1076)
.+|+..|-.+++...-..+-.-..++..++++|.-++..+-......+-.++-+..... .---..++..+.+.+.. ++
T Consensus 281 rva~ylLlNlAed~~~ElKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~eNK~-~M~~~~iveKL~klfp~-~h 358 (791)
T KOG1222|consen 281 RVAVYLLLNLAEDISVELKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSIFDENKI-VMEQNGIVEKLLKLFPI-QH 358 (791)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhhhccchH-HHHhccHHHHHHHhcCC-CC
Confidence 46777777788776644444445688888888877776666666666666654433222 11233566667777766 66
Q ss_pred hhHHHHHHHHHHHh
Q 001442 437 PRVQAHAASAVLNF 450 (1076)
Q Consensus 437 ~~v~~~a~~aL~~l 450 (1076)
+.++......+-++
T Consensus 359 ~dL~~~tl~LlfNl 372 (791)
T KOG1222|consen 359 PDLRKATLMLLFNL 372 (791)
T ss_pred HHHHHHHHHHhhhc
Confidence 77776666555554
No 262
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.19 E-value=74 Score=36.17 Aligned_cols=133 Identities=19% Similarity=0.206 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhchhhhHHHHHHhHhhhhcCCCCHHHHHHHHHHHHHHHHHhhhhhHhhHHhHHHHHHhhcc
Q 001442 816 EEVFDQVGEILGTLIKTFKAAFLPFFDELSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREAALKYYETYLPFLLEACN 895 (1076)
Q Consensus 816 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~ 895 (1076)
...+..+++.+..++-..|..-. +..+.- +......+.+.-..++.++..++++..+.- +.++|.+++.+.
T Consensus 366 ~~fR~~v~dvl~Dv~~iigs~e~--lk~~~~---~l~e~~~~We~~EAaLF~l~~~~~~~~~~e----~~i~pevl~~i~ 436 (559)
T KOG2081|consen 366 FEFRLKVGDVLKDVAFIIGSDEC--LKQMYI---RLKENNASWEEVEAALFILRAVAKNVSPEE----NTIMPEVLKLIC 436 (559)
T ss_pred HHHHHHHHHHHHHHHHHhCcHHH--HHHHHH---HHccCCCchHHHHHHHHHHHHHhccCCccc----cchHHHHHHHHh
Confidence 55677888888888877775421 122221 112235577888889999999999876643 355666666554
Q ss_pred C--CChhHHhhhhHHHHHHHhhcCCCchHHHHHHHHHHHHhhcCCCCCChhhhhHHHHHHHHHHHHHhhcCCC
Q 001442 896 D--ENQDVRQAAVYGLGVCAEFGGSVVKPLVGEALSRLNVVIRHPNALQPENLMAYDNAVSALGKICQFHRDS 966 (1076)
Q Consensus 896 ~--~~~~vr~~a~~~lg~l~~~~~~~~~~~~~~il~~L~~~l~~~~~~~~~~~~~~~na~~al~~i~~~~~~~ 966 (1076)
+ ....+|..++.-+|.+.+.....- ..+..+++.+...++.. .....++.|+.+++..+...
T Consensus 437 nlp~Q~~~~~ts~ll~g~~~ew~~~~p-~~le~v~~~~~~~~~~~--------~~as~~a~~~~~i~~~c~~~ 500 (559)
T KOG2081|consen 437 NLPEQAPLRYTSILLLGEYSEWVEQHP-ELLEPVLRYIRQGLQLK--------RLASAAALAFHRICSACRVQ 500 (559)
T ss_pred CCccchhHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHhhhc--------chhHHHHHHHHHHHHHHHHH
Confidence 3 344599999999999998765431 23344445555544432 13444556666666655443
No 263
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=84.78 E-value=23 Score=32.82 Aligned_cols=79 Identities=24% Similarity=0.196 Sum_probs=61.1
Q ss_pred hHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHhHhhHHhhH--hhhHHHHHHHHhccCCchhhhhHHHHHHHHHHHHHH
Q 001442 463 LDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYY--DAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMA 540 (1076)
Q Consensus 463 l~~ll~~l~~~l~~~~~~v~~~al~ai~~l~~~~~~~~~~~~--~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~i~~~ 540 (1076)
-...+..+.+-+++.++.+...++..+..++..+|..|...+ ..++..|..++.+ ..+..++.++++.+...+.+
T Consensus 39 ~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~---~~~~~Vk~kil~li~~W~~~ 115 (142)
T cd03569 39 PKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKT---TKNEEVRQKILELIQAWALA 115 (142)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcc---cCCHHHHHHHHHHHHHHHHH
Confidence 456788888889999999999999999999999999876433 3567777776654 23456788888888888877
Q ss_pred hchh
Q 001442 541 VGKD 544 (1076)
Q Consensus 541 ~g~~ 544 (1076)
++.+
T Consensus 116 f~~~ 119 (142)
T cd03569 116 FRNK 119 (142)
T ss_pred hCCC
Confidence 7643
No 264
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=84.71 E-value=51 Score=33.84 Aligned_cols=150 Identities=13% Similarity=0.069 Sum_probs=87.1
Q ss_pred hHHHHHHHHHHHcCCCcchHHHHHHHHHh-------h--cCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhC
Q 001442 319 VGQECLDRLAIALGGNTIVPVASEQLPAY-------L--AAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSF 389 (1076)
Q Consensus 319 ~a~~~l~~l~~~~~~~~~~~~l~~~l~~~-------l--~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l 389 (1076)
.+...+..+-+.- +..+|.+-+.+... . .+..|....+...++..++...++ +-.++++.|...+
T Consensus 57 ~~~rLl~~lw~~~--~r~f~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L 130 (234)
T PF12530_consen 57 VALRLLTLLWKAN--DRHFPFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD----HGVDLLPLLSGCL 130 (234)
T ss_pred HHHHHHHHHHHhC--chHHHHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHH
Confidence 4445555554442 34556665555441 1 134687777777778877777665 5556777777777
Q ss_pred -CCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhc-CCcccccCchHHHH
Q 001442 390 -RDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSEN-CTPEILTPYLDGIV 467 (1076)
Q Consensus 390 -~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~aL~~l~~~-~~~~~l~~~l~~ll 467 (1076)
++.++.++..++.++..+++.---++ . .....+.+.++....|.+....|..+..+-.. .+.+........++
T Consensus 131 ~~~~~~~~~alale~l~~Lc~~~vvd~-~----s~w~vl~~~l~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l 205 (234)
T PF12530_consen 131 NQSCDEVAQALALEALAPLCEAEVVDF-Y----SAWKVLQKKLSLDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQIL 205 (234)
T ss_pred hccccHHHHHHHHHHHHHHHHHhhccH-H----HHHHHHHHhcCCccchHHHHHHHHHHHHhccccCChhhhhHHHHHHH
Confidence 78889999999999999985433333 2 23344444445435666655544444333221 11122233455667
Q ss_pred HHHHHHhhcCch
Q 001442 468 SKLLVLLQNGKQ 479 (1076)
Q Consensus 468 ~~l~~~l~~~~~ 479 (1076)
..+.+.....+.
T Consensus 206 ~~lW~~~~~~~~ 217 (234)
T PF12530_consen 206 QLLWEYTSSSDV 217 (234)
T ss_pred HHHHhhcccccc
Confidence 777777666654
No 265
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=84.66 E-value=3.8 Score=36.09 Aligned_cols=69 Identities=16% Similarity=0.207 Sum_probs=48.4
Q ss_pred HHHHHHhhC-CCCChhHHHHHHHHHHHhhhhhchhHHhhhh--hhhHHHHHhhccCCCChhHHHHHHHHHHHhhh
Q 001442 381 VLSMVLNSF-RDPHPRVRWAAINAIGQLSTDLGPDLQNQFH--PQVLPALAGAMDDFQNPRVQAHAASAVLNFSE 452 (1076)
Q Consensus 381 i~~~l~~~l-~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~--~~ll~~l~~~l~~~~~~~v~~~a~~aL~~l~~ 452 (1076)
++..+...| .+.++.+...||.=||.++...+..- ..+ -..=..+++.+.+ +++.||..|..|+..++-
T Consensus 44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr--~ii~~lg~K~~vM~Lm~h-~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGR--NIIEKLGAKERVMELMNH-EDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGH--HHHHHHSHHHHHHHHTS--SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCcceeehhhcchHHHHHHChhHH--HHHHhcChHHHHHHHhcC-CCHHHHHHHHHHHHHHHH
Confidence 455555555 34478888899999999999875432 222 2344567788888 999999999999988764
No 266
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=84.31 E-value=11 Score=35.01 Aligned_cols=78 Identities=13% Similarity=0.279 Sum_probs=59.5
Q ss_pred HHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhh-hhhhHHHHHhhccCCCChh---HHHHHHHHHHHhhhcC
Q 001442 379 EQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQF-HPQVLPALAGAMDDFQNPR---VQAHAASAVLNFSENC 454 (1076)
Q Consensus 379 ~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~-~~~ll~~l~~~l~~~~~~~---v~~~a~~aL~~l~~~~ 454 (1076)
...+..|.+.|.+++|.++..|+..+..++..+++.+...+ -..++..+...+.+.+... |+..+...+......+
T Consensus 41 kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~f 120 (140)
T PF00790_consen 41 KEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEAF 120 (140)
T ss_dssp HHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHHH
Confidence 45778888999999999999999999999999988774432 2346666666555423333 8999999999998888
Q ss_pred Cc
Q 001442 455 TP 456 (1076)
Q Consensus 455 ~~ 456 (1076)
..
T Consensus 121 ~~ 122 (140)
T PF00790_consen 121 KS 122 (140)
T ss_dssp TT
T ss_pred CC
Confidence 53
No 267
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=84.14 E-value=25 Score=32.37 Aligned_cols=95 Identities=12% Similarity=0.046 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHhHhhhhcCCCCHHHHHHHHHHHHHHHHHhhhhhHhhH--HhHHHHHHh
Q 001442 815 EEEVFDQVGEILGTLIKTFKAAFLPFFDELSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREAALKYY--ETYLPFLLE 892 (1076)
Q Consensus 815 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~--~~ll~~l~~ 892 (1076)
++.....+++.+.. -+... ...+..+.+.+ .++++.+...|+.++..++++||..+...+ ..|+..+++
T Consensus 18 dw~~ileicD~In~----~~~~~----k~a~rai~krl-~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~k 88 (139)
T cd03567 18 DWEAIQAFCEQINK----EPEGP----QLAVRLLAHKI-QSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIK 88 (139)
T ss_pred CHHHHHHHHHHHHc----CCccH----HHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHH
Confidence 46666677777642 12111 11233444445 466777888899999999999999775522 556666666
Q ss_pred hccC------CChhHHhhhhHHHHHHHhhcCC
Q 001442 893 ACND------ENQDVRQAAVYGLGVCAEFGGS 918 (1076)
Q Consensus 893 ~l~~------~~~~vr~~a~~~lg~l~~~~~~ 918 (1076)
.+.. .++.|++-....+...+...+.
T Consensus 89 l~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~ 120 (139)
T cd03567 89 LVSPKYLGSRTSEKVKTKIIELLYSWTLELPH 120 (139)
T ss_pred HhccccCCCCCCHHHHHHHHHHHHHHHHHhcc
Confidence 6642 4678998888888887776653
No 268
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=83.98 E-value=1.5 Score=30.53 Aligned_cols=40 Identities=30% Similarity=0.404 Sum_probs=27.8
Q ss_pred HHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHH
Q 001442 362 ALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINA 403 (1076)
Q Consensus 362 ~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~ 403 (1076)
+++.+++.-+..+. -+.+...+...+.|+++.||.+|..+
T Consensus 2 ~l~~iv~~dp~ll~--~~~v~~~i~~rl~D~s~~VR~aav~l 41 (42)
T PF12765_consen 2 ALSSIVEKDPTLLD--SSDVQSAIIRRLSDSSPSVREAAVDL 41 (42)
T ss_pred hHHHHHhcCccccc--hHHHHHHHHHHhcCCChHHHHHHHHH
Confidence 34555554433222 23678889999999999999999865
No 269
>PF11919 DUF3437: Domain of unknown function (DUF3437); InterPro: IPR021843 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 142 to 163 amino acids in length. ; PDB: 3L5Q_6 1VSY_5.
Probab=83.97 E-value=1.8 Score=36.16 Aligned_cols=61 Identities=13% Similarity=0.187 Sum_probs=47.5
Q ss_pred hHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhH
Q 001442 354 QKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDL 415 (1076)
Q Consensus 354 ~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~ 415 (1076)
..|++++++|++++...+..+-++++.++..+.....| ...|+..+-.+++.|-+.-.+..
T Consensus 4 ~~rH~~VLGL~Alv~a~Py~vP~w~P~~l~~La~~~~~-~~~I~~tvk~tl~eFkrtH~D~W 64 (90)
T PF11919_consen 4 RRRHAAVLGLSALVLAFPYDVPPWMPEVLEELARHAND-PQPIRTTVKKTLSEFKRTHQDTW 64 (90)
T ss_dssp HHHHHHHHHHHHHHTT-S--SS-HHHHHHHHHHTTSSS--SSHHHHTHHHHHHHHHHTSTTH
T ss_pred HHHHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHhCC-CchHHHHHHHHHHHHHHhCcccH
Confidence 57899999999999998877778999999998888887 56789899999999877655544
No 270
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=83.93 E-value=15 Score=33.77 Aligned_cols=78 Identities=9% Similarity=0.195 Sum_probs=60.2
Q ss_pred HHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhh-hhhhHHHHHhhccCCCChh-HHHHHHHHHHHhhhcCCc
Q 001442 379 EQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQF-HPQVLPALAGAMDDFQNPR-VQAHAASAVLNFSENCTP 456 (1076)
Q Consensus 379 ~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~-~~~ll~~l~~~l~~~~~~~-v~~~a~~aL~~l~~~~~~ 456 (1076)
...+..|.+.+.+++|.+...|+..+..++..++..+...+ ...++..+...+.+..... |+..+...+......+..
T Consensus 36 k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~f~~ 115 (133)
T smart00288 36 KDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADAFKN 115 (133)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHcC
Confidence 35677888899999999999999999999999988774333 3346677777776633333 999999999998887753
No 271
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=83.85 E-value=22 Score=32.60 Aligned_cols=80 Identities=23% Similarity=0.188 Sum_probs=61.8
Q ss_pred hHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHhHhhHHhhH-h-hhHHHHHHHHhccCCchhhhhHHHHHHHHHHHHHH
Q 001442 463 LDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYY-D-AVMPFLKAILVNATDKSNRMLRAKSMECISLVGMA 540 (1076)
Q Consensus 463 l~~ll~~l~~~l~~~~~~v~~~al~ai~~l~~~~~~~~~~~~-~-~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~i~~~ 540 (1076)
-...+..|.+-++++++.++..|+..+..++..+|..|...+ . .++..|..++... ...+..+|.++++.+...+..
T Consensus 35 ~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~-~~~~~~Vk~kil~ll~~W~~~ 113 (133)
T cd03561 35 PKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNS-PKYDPKVREKALELILAWSES 113 (133)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCC-CCCCHHHHHHHHHHHHHHHHH
Confidence 356788888889999999999999999999999999886444 3 4566666666542 233566888999999888887
Q ss_pred hch
Q 001442 541 VGK 543 (1076)
Q Consensus 541 ~g~ 543 (1076)
++.
T Consensus 114 f~~ 116 (133)
T cd03561 114 FGG 116 (133)
T ss_pred hcC
Confidence 764
No 272
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=83.62 E-value=17 Score=33.74 Aligned_cols=95 Identities=9% Similarity=0.105 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHhHhhhhcCCCCHHHHHHHHHHHHHHHHHhhhhhHhhH--HhHHHH-HH
Q 001442 815 EEEVFDQVGEILGTLIKTFKAAFLPFFDELSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREAALKYY--ETYLPF-LL 891 (1076)
Q Consensus 815 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~--~~ll~~-l~ 891 (1076)
++.+.-.+++.+.. +..|+. ..+..+.+.+..++++.+...|+.++..++++||..+...+ ..|+.. ++
T Consensus 18 dw~~ileicD~In~--~~~~~k------~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~ 89 (141)
T cd03565 18 DWGLNMEICDIINE--TEDGPK------DAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLV 89 (141)
T ss_pred CHHHHHHHHHHHhC--CCCcHH------HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHH
Confidence 46666677777653 222221 23444555554455677777899999999999998776522 456665 55
Q ss_pred hhccC---CChhHHhhhhHHHHHHHhhcC
Q 001442 892 EACND---ENQDVRQAAVYGLGVCAEFGG 917 (1076)
Q Consensus 892 ~~l~~---~~~~vr~~a~~~lg~l~~~~~ 917 (1076)
+.+.. .+..|+.-....+..++...+
T Consensus 90 ~~i~~~~~~~~~Vk~kil~li~~W~~~f~ 118 (141)
T cd03565 90 KLINPKNNPPTIVQEKVLALIQAWADAFR 118 (141)
T ss_pred HHHcccCCCcHHHHHHHHHHHHHHHHHhC
Confidence 55542 345788887777777776654
No 273
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=83.52 E-value=7.1 Score=39.67 Aligned_cols=136 Identities=10% Similarity=0.093 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHHhhhchhhhHHH-----HHHhHhhhhcCCC-CHHHHHHHHHHHHHHHHHhhhhhHhhH--HhHHHHHH
Q 001442 820 DQVGEILGTLIKTFKAAFLPFFDE-----LSSYLTPMWGKDK-TAEERRIAICIFDDVAEQCREAALKYY--ETYLPFLL 891 (1076)
Q Consensus 820 ~~~~~~l~~l~~~~~~~~~~~~~~-----l~~~l~~~l~~~~-~~~~r~~al~~l~~l~~~~~~~~~~~~--~~ll~~l~ 891 (1076)
..+..++..++. +++.=.++++. +.|.+...- +++ -...|-++++++|.+++.-...+..|+ .+++|..+
T Consensus 68 cnaLaLlQ~vAs-hpetr~~Fl~a~iplyLyPfL~tt~-k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcL 145 (262)
T PF04078_consen 68 CNALALLQCVAS-HPETRMPFLKAHIPLYLYPFLNTTS-KTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCL 145 (262)
T ss_dssp HHHHHHHHHHHH--TTTHHHHHHTTGGGGGHHHHH-----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHH
T ss_pred HHHHHHHHHHHc-ChHHHHHHHHcCchhhehhhhhccc-cccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHH
Confidence 345566666665 55443344444 344443222 222 234688999999999998777777765 78999999
Q ss_pred hhccCCChhHHhhhhHHHHHHHhhcC---------CCchHHHHHHHHHHHHhhcCCCCCChhhhhHHHHHHHHHHHHHhh
Q 001442 892 EACNDENQDVRQAAVYGLGVCAEFGG---------SVVKPLVGEALSRLNVVIRHPNALQPENLMAYDNAVSALGKICQF 962 (1076)
Q Consensus 892 ~~l~~~~~~vr~~a~~~lg~l~~~~~---------~~~~~~~~~il~~L~~~l~~~~~~~~~~~~~~~na~~al~~i~~~ 962 (1076)
+.+..++.--+..|.+-+..+...-. +.|. .+..++..++..+... -...+.++++.|.-|+..+
T Consensus 146 r~me~GselSKtvAtfIlqKIL~dd~GL~yiC~t~eRf~-av~~vL~~mV~~l~~~-----pS~RLLKhIIrCYlRLsdn 219 (262)
T PF04078_consen 146 RIMEFGSELSKTVATFILQKILLDDVGLNYICQTAERFF-AVAMVLNKMVEQLVKQ-----PSPRLLKHIIRCYLRLSDN 219 (262)
T ss_dssp HHHHHS-HHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHH-HHHHHHHHHHHHHHHS-------HHHHHHHHHHHHHHTTS
T ss_pred HHHHhccHHHHHHHHHHHHHHHcchhHHHHHhcCHHHHH-HHHHHHHHHHHHHccC-----CChhHHHHHHHHHHHHccC
Confidence 99998888888889998877765321 1222 2344455554444322 1357778888888888654
Q ss_pred c
Q 001442 963 H 963 (1076)
Q Consensus 963 ~ 963 (1076)
.
T Consensus 220 p 220 (262)
T PF04078_consen 220 P 220 (262)
T ss_dssp T
T ss_pred H
Confidence 3
No 274
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=83.38 E-value=72 Score=34.60 Aligned_cols=184 Identities=11% Similarity=0.214 Sum_probs=107.5
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHccCcH--------HHHHhHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHhhc
Q 001442 197 TLTESLNNGNEATAQEALELLIELAGTEPR--------FLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARE 268 (1076)
Q Consensus 197 ~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~--------~~~~~l~~l~~~l~~~~~~~~~~~~~r~~al~~l~~l~~~~~ 268 (1076)
.+...+..-+.+.|+.+..++..+...... .+..|.+.++..++..-+++ ++...+-.++..+++++
T Consensus 80 ~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~----dial~~g~mlRec~k~e- 154 (335)
T PF08569_consen 80 LLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENP----DIALNCGDMLRECIKHE- 154 (335)
T ss_dssp HHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGST----TTHHHHHHHHHHHTTSH-
T ss_pred HHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCc----cccchHHHHHHHHHhhH-
Confidence 344445566788999999999888775421 23344467788777766543 34445555566665531
Q ss_pred ccchhhccchhhHHHHHHHHHHhhcCCCCCccccCCCCCCcccCCCCchhhHHHHHHHHHHHcCCC-cc--------hHH
Q 001442 269 RAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGN-TI--------VPV 339 (1076)
Q Consensus 269 ~~~~~~~~~~~~~~~l~~~l~~~l~~~~dd~~~~~~~~e~~d~~e~~~~~~a~~~l~~l~~~~~~~-~~--------~~~ 339 (1076)
...+.+ +-+..+..++.++ +...+.+|.+++.++-..+... .+ +..
T Consensus 155 ---~l~~~i--L~~~~f~~ff~~~--------------------~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ 209 (335)
T PF08569_consen 155 ---SLAKII--LYSECFWKFFKYV--------------------QLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDR 209 (335)
T ss_dssp ---HHHHHH--HTSGGGGGHHHHT--------------------TSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHH
T ss_pred ---HHHHHH--hCcHHHHHHHHHh--------------------cCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 111100 0011111122222 1224566666666665544321 11 233
Q ss_pred HHHHHHHhhcCCChhHHHHHHHHHHHHHhh--cHHHHHHhHH--HHHHHHHhhCCCCChhHHHHHHHHHHHhhhh
Q 001442 340 ASEQLPAYLAAPEWQKHHAALIALAQIAEG--CAKVMVKNLE--QVLSMVLNSFRDPHPRVRWAAINAIGQLSTD 410 (1076)
Q Consensus 340 l~~~l~~~l~~~~~~~r~aal~~l~~l~~~--~~~~~~~~l~--~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~ 410 (1076)
++.....++.++++-.|.-++..||.+... ....+..|+. .-+..++..|+|++..+|.-|...+--|+-.
T Consensus 210 ff~~~~~Ll~s~NYvtkrqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVAN 284 (335)
T PF08569_consen 210 FFQKYNKLLESSNYVTKRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVAN 284 (335)
T ss_dssp HHHHHHHHCT-SSHHHHHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHccCCCeEeehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhC
Confidence 455666778899999999999999998754 3456666654 4578899999999999999999988887754
No 275
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=83.34 E-value=89 Score=35.62 Aligned_cols=105 Identities=12% Similarity=0.066 Sum_probs=77.6
Q ss_pred cchHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchh
Q 001442 335 TIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPD 414 (1076)
Q Consensus 335 ~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~ 414 (1076)
.++...+.++.....+++-++|+-++..|+.+.....+.-......++.-+...+-|..+.||..|..+|.++-+.-..+
T Consensus 87 ~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~ne 166 (885)
T COG5218 87 ELVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNE 166 (885)
T ss_pred HHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCCh
Confidence 34445556666777889999999999999999988776444556677788888899999999999999999987543321
Q ss_pred HHhhhhhhhHHHHHhhccCCCChhHHHHHH
Q 001442 415 LQNQFHPQVLPALAGAMDDFQNPRVQAHAA 444 (1076)
Q Consensus 415 ~~~~~~~~ll~~l~~~l~~~~~~~v~~~a~ 444 (1076)
-..+...+...++..|+..||..|.
T Consensus 167 -----en~~~n~l~~~vqnDPS~EVRr~al 191 (885)
T COG5218 167 -----ENRIVNLLKDIVQNDPSDEVRRLAL 191 (885)
T ss_pred -----HHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 2234445555666558888988764
No 276
>PF08146 BP28CT: BP28CT (NUC211) domain; InterPro: IPR012954 This C-terminal domain is found in BAP28-like nucleolar proteins []. The bap28 mutation leads to abnormalities in the brain, starting at midsomitogenesis stages. Mutant zebrafish embryos display excessive apoptosis, especially in the central nervous system (CNS) that results in death. The mutation affects a gene that encodes a large protein with high similarity to the uncharacterised human protein BAP28 and lower similarity to yeast Utp10. Utp10 is a component of a nucleolar U3 small nucleolar RNA-containing RNP complex that is required for transcription of ribosomal DNA and for processing of 18 S rRNA. Zebrafish Bap28 is also required for rRNA transcription and processing, with a major effect on 18S rRNA maturation. Bap28 is therefore required for cell survival in the CNS through its role in rRNA synthesis and processing [].
Probab=83.31 E-value=38 Score=31.90 Aligned_cols=76 Identities=20% Similarity=0.290 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHhh-hchhhhHHHHHHhHhhhhcC--CCCHHHHHHH-HHHHHHHHHHhhhhhHhhHHhHHHHHHhhccC
Q 001442 821 QVGEILGTLIKTFK-AAFLPFFDELSSYLTPMWGK--DKTAEERRIA-ICIFDDVAEQCREAALKYYETYLPFLLEACND 896 (1076)
Q Consensus 821 ~~~~~l~~l~~~~~-~~~~~~~~~l~~~l~~~l~~--~~~~~~r~~a-l~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~ 896 (1076)
.+.+++-.++-.+. ..|.|.|..+..+-..-+.+ ......|..+ +.++..+.+.+...+.||+..++....+.++.
T Consensus 40 ~v~~~~~~lV~KLnE~~FRPlF~~l~dWA~~~l~~~~~~~~~~R~itfy~l~~~l~e~LKslf~~Y~~~ll~~~~~~L~~ 119 (153)
T PF08146_consen 40 SVISAFVSLVLKLNEATFRPLFLKLVDWATSGLPKSDSSGSRARLITFYRLLNALAEKLKSLFTPYFSYLLDNAVDLLKQ 119 (153)
T ss_pred HHHHHHHHHHHHcccchhHhHHHHHHHHHcccCCcccCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555554 56889999988887653322 2233445554 57889999999999999999999987777653
No 277
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=82.91 E-value=5 Score=33.37 Aligned_cols=70 Identities=10% Similarity=0.180 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhcccC--CCCcchhHHHHHHhhcCCCHHHHHHHHHHHHH
Q 001442 100 TQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILP--ENGWPELLPFMFQCVSSDSVKLQESAFLIFAQ 169 (1076)
Q Consensus 100 ~~~~lk~~Ll~~l~~~~~~~vr~~~~~~i~~ia~~~~~--~~~w~~ll~~l~~~~~~~~~~~r~~al~~L~~ 169 (1076)
.+..+.+-+...+...++..||..+.+++..+...... ...|+.++..+.....+++..+...|+.++..
T Consensus 14 fQ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~~ 85 (86)
T PF09324_consen 14 FQKDFLKPFEYIMSNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQL 85 (86)
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHHhh
Confidence 44455555555556667889999999999999874432 25899999999999998888888899888753
No 278
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=82.81 E-value=10 Score=32.85 Aligned_cols=62 Identities=11% Similarity=0.110 Sum_probs=55.4
Q ss_pred hhhHhhHHhHHHHHHhhccCCChhHHhhhhHHHHHHHhhcCCC-chHHHHHHHHHHHHhhcCC
Q 001442 877 EAALKYYETYLPFLLEACNDENQDVRQAAVYGLGVCAEFGGSV-VKPLVGEALSRLNVVIRHP 938 (1076)
Q Consensus 877 ~~~~~~~~~ll~~l~~~l~~~~~~vr~~a~~~lg~l~~~~~~~-~~~~~~~il~~L~~~l~~~ 938 (1076)
..+.||++.++..+..++.+-.++||.-|...+..+.++.|+. +..+..++++....++...
T Consensus 3 ~~l~p~~~~l~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~p~~~~~~~~~kil~~f~~ll~~~ 65 (102)
T PF12333_consen 3 ELLSPFFPLLMLYISSAMTHISPDIREDSLKFLDLLLEHAPDELCSGGWVKILPNFLDLLGWS 65 (102)
T ss_pred HHHHhHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHCChHhHhhhHHHHHHHHHHHHCCC
Confidence 3567899999999999999999999999999999999999987 7778889999999998754
No 279
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=82.47 E-value=23 Score=32.62 Aligned_cols=76 Identities=8% Similarity=0.187 Sum_probs=58.8
Q ss_pred HHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhh-hhhHHHHHhhccC-----CCChhHHHHHHHHHHHhhhc
Q 001442 380 QVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFH-PQVLPALAGAMDD-----FQNPRVQAHAASAVLNFSEN 453 (1076)
Q Consensus 380 ~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~-~~ll~~l~~~l~~-----~~~~~v~~~a~~aL~~l~~~ 453 (1076)
..+..|...+++++|.+.-.|+..|..+++.++..+..... ..++..+.+.+.. ..++.|+......+....+.
T Consensus 38 ~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 117 (139)
T cd03567 38 LAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTLE 117 (139)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 46678888899999999999999999999999887743322 3455566665532 25678999999999999887
Q ss_pred CC
Q 001442 454 CT 455 (1076)
Q Consensus 454 ~~ 455 (1076)
++
T Consensus 118 f~ 119 (139)
T cd03567 118 LP 119 (139)
T ss_pred hc
Confidence 76
No 280
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=81.14 E-value=51 Score=35.95 Aligned_cols=115 Identities=21% Similarity=0.220 Sum_probs=77.9
Q ss_pred HHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhH---HhhhhhhhHHHHHh-hccCCCChhHHHHHHHHHHHhhhcCC
Q 001442 380 QVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDL---QNQFHPQVLPALAG-AMDDFQNPRVQAHAASAVLNFSENCT 455 (1076)
Q Consensus 380 ~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~---~~~~~~~ll~~l~~-~l~~~~~~~v~~~a~~aL~~l~~~~~ 455 (1076)
+++..+...+.+.+.....++..++|.|++.-...+ ...+++.++..+.+ .-.| .+.+++.+++.||.++.--..
T Consensus 315 ~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vd-gnV~~qhA~lsALRnl~IPv~ 393 (604)
T KOG4500|consen 315 QFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVD-GNVERQHACLSALRNLMIPVS 393 (604)
T ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCC-ccchhHHHHHHHHHhccccCC
Confidence 478888889988888899999999999987533222 12344445554444 2234 678889999999999864332
Q ss_pred cccccCch-HHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHhH
Q 001442 456 PEILTPYL-DGIVSKLLVLLQNGKQMVQEGALTALASVADSSQ 497 (1076)
Q Consensus 456 ~~~l~~~l-~~ll~~l~~~l~~~~~~v~~~al~ai~~l~~~~~ 497 (1076)
.+ ..++ ..+.+.++..++...+.+.-..+..+..+....+
T Consensus 394 nk--a~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe 434 (604)
T KOG4500|consen 394 NK--AHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQE 434 (604)
T ss_pred ch--hhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchH
Confidence 21 1122 2567777788887777777777777777766544
No 281
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=81.08 E-value=92 Score=34.19 Aligned_cols=199 Identities=14% Similarity=0.148 Sum_probs=108.4
Q ss_pred HHHHHhHhhhhcCCCCHHHHHHHHHHHHHHHHHhhhhhHhhHHhHHHHHHhhccCCChhHHhhhhHHHHHHHh----hc-
Q 001442 842 DELSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREAALKYYETYLPFLLEACNDENQDVRQAAVYGLGVCAE----FG- 916 (1076)
Q Consensus 842 ~~l~~~l~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~vr~~a~~~lg~l~~----~~- 916 (1076)
..++..+..++.+..+.......+.+++.-+..++. ..-+.++..+.+++.+..+.+|+.-+.++|.+.. ..
T Consensus 21 ~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~~~---~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~~~ 97 (339)
T PF12074_consen 21 SKIVQGLSPLLSKESNEAALSALLSALFKHLFFLSS---ELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNSDS 97 (339)
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCc---CCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCchH
Confidence 345555555555555555555555555555544422 2346888999999999999999999999999987 11
Q ss_pred CCCchHHHHHHHHHHHHhhcCCCCCChhhhhHHHHHHHHHHHHHhhcCCC------------C-CHhh--HHHHHHhhCC
Q 001442 917 GSVVKPLVGEALSRLNVVIRHPNALQPENLMAYDNAVSALGKICQFHRDS------------I-DAAQ--VVPAWLNCLP 981 (1076)
Q Consensus 917 ~~~~~~~~~~il~~L~~~l~~~~~~~~~~~~~~~na~~al~~i~~~~~~~------------~-~~~~--~l~~~l~~lp 981 (1076)
...+.++++.+++.+.+...+|-... .+ .....|...++ +....... . +=+. +-+.+++.+
T Consensus 98 ~~~~~~~~~~L~~~~~~~~~~p~~~~-~~-~~~~~a~~~l~-~~~~~~~~~~~~~~~~~~l~~~~kps~ll~~kvyskl- 173 (339)
T PF12074_consen 98 LKFAEPFLPKLLQSLKEASANPLQSA-QN-GELVGAYVLLA-LSSWKLDKIDSKNISFWSLALDPKPSFLLSEKVYSKL- 173 (339)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCcc-cc-ccHHHHHHHHH-hccccchhhhhhhhhhhhhccCCCcchhcCHHHHhcc-
Confidence 12344566666666666666653221 00 11111211111 00000000 0 0011 123455553
Q ss_pred CCCcHHHHHHHHHHHHHHHhhcCCcccCcCcCchhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhCCh
Q 001442 982 IKGDLIEAKIVHEQLCSMVERSDSDLLGPNHQYLPKIVSVFAEILCGKDLATEQTLSRIVNLLKQLQQTLPP 1053 (1076)
Q Consensus 982 ~~~d~~e~~~~~~~l~~li~~~~~~~~~~~~~~l~~i~~~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~ 1053 (1076)
.+.++.....+++..+....+....+. ......+.|...+..... +.+.+......++.+-...|+
T Consensus 174 --~~~~d~~w~~~al~~~~~~~~~~~~~~---~~~~~~~a~i~ll~s~~~-~~~vR~~A~~~l~~l~~~~~~ 239 (339)
T PF12074_consen 174 --ASEEDLCWLLRALEALLSDHPSELSSD---KSSAWAQAFIYLLCSSNV-SWKVRRAALSALKKLYASNPE 239 (339)
T ss_pred --CCHhHHHHHHHHHHHHHhcchhhhhhh---HHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHhChH
Confidence 344666677777777774333333221 123456666666654332 456888888888877776665
No 282
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=80.57 E-value=79 Score=33.11 Aligned_cols=175 Identities=13% Similarity=0.126 Sum_probs=87.7
Q ss_pred CHHHHHHHHHHHHHHHccCcHH--HHHhHHH-HHHHHHHHhcCCCcchhHHHHHHHHHHHHHHhhcccchhhccchhhHH
Q 001442 206 NEATAQEALELLIELAGTEPRF--LRRQLVD-VVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFIN 282 (1076)
Q Consensus 206 ~~~~~~~~~~~l~~l~~~~~~~--~~~~l~~-l~~~l~~~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~ 282 (1076)
.+.+..-++.++..++...|+- +.+-+.. +....--..+.+-.+++++.. ++.+.+....+ . .....+..|+.
T Consensus 249 keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~d-i~~i~s~l~~~--~-k~l~~fD~Y~~ 324 (432)
T COG5231 249 KEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVID-IERIRSRLVQN--T-KKLCIFDNYLN 324 (432)
T ss_pred HHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHH-HHHHHHHHHhh--h-hhhhHHHHHHH
Confidence 3456667777777777755432 2221111 222211222333456666655 66666655531 1 11112345555
Q ss_pred HHHHHHHHhhcCCCCCccccCCCCCCcccCCCCchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhcCCChh-HHHHHHH
Q 001442 283 RLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQ-KHHAALI 361 (1076)
Q Consensus 283 ~l~~~l~~~l~~~~dd~~~~~~~~e~~d~~e~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~-~r~aal~ 361 (1076)
.+..-++.+-...-+.+-|. .-++.+-+. -. .++..+.+.+++.+++ .-..|+.
T Consensus 325 ELdsg~l~wSp~H~~~dFWs-------------------~N~d~l~kd-----ny-~i~k~L~~~lq~n~~nt~i~vAc~ 379 (432)
T COG5231 325 ELDSGRLEWSPYHHKKDFWS-------------------TNLDMLIKD-----NY-EIVKVLKKYLQSNNPNTWICVACS 379 (432)
T ss_pred HHhhCcccCCCcccccCchh-------------------hhHHHHhhh-----hH-HHHHHHHHHHhcCCCCceEeeeHh
Confidence 55554444422221222222 122333211 01 1334444555544433 3346777
Q ss_pred HHHHHHhhcHHHHHHhHH-HHHHHHHhhCCCCChhHHHHHHHHHHHhhh
Q 001442 362 ALAQIAEGCAKVMVKNLE-QVLSMVLNSFRDPHPRVRWAAINAIGQLST 409 (1076)
Q Consensus 362 ~l~~l~~~~~~~~~~~l~-~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~ 409 (1076)
-++.+.+..|+...-... ..-..|+..++++++.||.-|+.++..+..
T Consensus 380 Di~~~Vr~~PE~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i~ 428 (432)
T COG5231 380 DIFQLVRASPEINAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCIS 428 (432)
T ss_pred hHHHHHHhCchHHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHHh
Confidence 788888777753321111 234567788899999999999998877653
No 283
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=79.88 E-value=96 Score=33.69 Aligned_cols=75 Identities=15% Similarity=0.177 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccC--cHHHHHhHH--HHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHh
Q 001442 191 LPLMMRTLTESLNNGNEATAQEALELLIELAGTE--PRFLRRQLV--DVVGSMLQIAEAESLEEGTRHLAIEFVITLAEA 266 (1076)
Q Consensus 191 ~p~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~--~~~~~~~l~--~l~~~l~~~~~~~~~~~~~r~~al~~l~~l~~~ 266 (1076)
...+......++.+++--.+..++..|.++.... ...+..|+. .-+..++..+.+ .+..++..|+.++.-++-+
T Consensus 207 ~d~ff~~~~~Ll~s~NYvtkrqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d--~sk~Iq~eAFhvFKvFVAN 284 (335)
T PF08569_consen 207 YDRFFQKYNKLLESSNYVTKRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRD--KSKNIQFEAFHVFKVFVAN 284 (335)
T ss_dssp HHHHHHHHHHHCT-SSHHHHHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT---S-HHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHccCCCeEeehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcC--cchhhhHHHHHHHHHHHhC
Confidence 3456666667778888888999999999998543 455566654 456667777754 4688999999999998885
Q ss_pred h
Q 001442 267 R 267 (1076)
Q Consensus 267 ~ 267 (1076)
+
T Consensus 285 p 285 (335)
T PF08569_consen 285 P 285 (335)
T ss_dssp S
T ss_pred C
Confidence 3
No 284
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=79.72 E-value=48 Score=32.55 Aligned_cols=86 Identities=15% Similarity=0.194 Sum_probs=63.4
Q ss_pred hhHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhCCcchHhHHhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHc
Q 001442 143 ELLPFMFQCVSSDSVKLQESAFLIFAQLIINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAG 222 (1076)
Q Consensus 143 ~ll~~l~~~~~~~~~~~r~~al~~L~~l~~~~~~~l~~~~~~~~~~~l~p~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~ 222 (1076)
..++.+++++.+++..+|..|+.++..++. +++-+| .. .++.+..+..++++..+..|...+..+.+
T Consensus 8 ryl~~Il~~~~~~~~~vr~~Al~~l~~il~---qGLvnP------~~----cvp~lIAL~ts~~~~ir~~A~~~l~~l~e 74 (187)
T PF12830_consen 8 RYLKNILELCLSSDDSVRLAALQVLELILR---QGLVNP------KQ----CVPTLIALETSPNPSIRSRAYQLLKELHE 74 (187)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHh---cCCCCh------HH----HHhHhhhhhCCCChHHHHHHHHHHHHHHH
Confidence 356777888888999999999999977642 233332 12 34445555678999999999999999999
Q ss_pred cCcHHHHHhHHHHHHHHHH
Q 001442 223 TEPRFLRRQLVDVVGSMLQ 241 (1076)
Q Consensus 223 ~~~~~~~~~l~~l~~~l~~ 241 (1076)
.++.++...+..-+.....
T Consensus 75 K~~s~v~~~~~~gi~~af~ 93 (187)
T PF12830_consen 75 KHESLVESRYSEGIRLAFD 93 (187)
T ss_pred HhHHHHHHHHHHHHHHHHH
Confidence 9999988766655554443
No 285
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=79.37 E-value=1.4e+02 Score=37.32 Aligned_cols=124 Identities=15% Similarity=0.219 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHhhcHHHHHHhHHHHHHH-HHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCC
Q 001442 356 HHAALIALAQIAEGCAKVMVKNLEQVLSM-VLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDF 434 (1076)
Q Consensus 356 r~aal~~l~~l~~~~~~~~~~~l~~i~~~-l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~ 434 (1076)
|...+...........+.+...+..++.. ++...+|-.|.+|..|...||-++...+..+. -...+..+-=.|.|
T Consensus 262 rle~Ll~~r~etqe~~d~i~~mi~~if~sVFVHRYRDV~~~IRaiCiqeLgiWi~~yP~~Fl---~dsYLKYiGWtLsD- 337 (1048)
T KOG2011|consen 262 RLESLLMLRKETQEQQDEIESMINDIFDSVFVHRYRDVDPDIRAICIQELGIWIKSYPEIFL---SDSYLKYIGWTLSD- 337 (1048)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhheeeeecccCchHHHHHHHHHHHHHHHhccHHHh---cchHHHHhcceeec-
Confidence 56666666666655555555555555543 34556899999999999999998887766542 22344444456788
Q ss_pred CChhHHHHHHHHHHHhhhcCCcccccCchHHHHHH----HHHHh-hcCchhHHHHHH
Q 001442 435 QNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSK----LLVLL-QNGKQMVQEGAL 486 (1076)
Q Consensus 435 ~~~~v~~~a~~aL~~l~~~~~~~~l~~~l~~ll~~----l~~~l-~~~~~~v~~~al 486 (1076)
.+..||..+..+|..+.+.-. +.+.+..+..+ ++.+. .+.+..||...+
T Consensus 338 k~~~VRl~~lkaL~~L~e~~~---~~~~L~lFtsRFK~RIVeMadrd~~~~Vrav~L 391 (1048)
T KOG2011|consen 338 KNGTVRLRCLKALIKLYEKDE---DKDKLELFTSRFKDRIVEMADRDRNVSVRAVGL 391 (1048)
T ss_pred CccHHHHHHHHHHHHHHhccc---cchHHHHHHHHHHHHHHHHHhhhcchhHHHHHH
Confidence 889999999999999998722 34445444444 34444 344555554443
No 286
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=79.15 E-value=34 Score=41.23 Aligned_cols=79 Identities=14% Similarity=0.104 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHhhH-HhHHHHHHhhcc-CCChhHHhhhhHHHHHHHhhcCCCchHHHHHHHHHHHHhh
Q 001442 858 AEERRIAICIFDDVAEQCREAALKYY-ETYLPFLLEACN-DENQDVRQAAVYGLGVCAEFGGSVVKPLVGEALSRLNVVI 935 (1076)
Q Consensus 858 ~~~r~~al~~l~~l~~~~~~~~~~~~-~~ll~~l~~~l~-~~~~~vr~~a~~~lg~l~~~~~~~~~~~~~~il~~L~~~l 935 (1076)
+..|..++.+|+.++..-+..+.... ..+++.+++++. |.+..+-..|+.+|-.+.-+.+..+.+|++.++....+++
T Consensus 82 ~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ip~~l~~~L~~Lf~If~Rl~ 161 (668)
T PF04388_consen 82 PSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHIPSSLGPHLPDLFNIFGRLL 161 (668)
T ss_pred chhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHH
Confidence 45789999999999998777665533 578888898887 6788999999999999999999999999999999988887
Q ss_pred c
Q 001442 936 R 936 (1076)
Q Consensus 936 ~ 936 (1076)
.
T Consensus 162 ~ 162 (668)
T PF04388_consen 162 S 162 (668)
T ss_pred H
Confidence 3
No 287
>KOG3961 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.02 E-value=4.7 Score=38.88 Aligned_cols=74 Identities=19% Similarity=0.075 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhHhhHHhHHHHHHhhccCCChhHHhhhhHHHHHHHhhcC---CCchHHHHHHHHHHHH
Q 001442 860 ERRIAICIFDDVAEQCREAALKYYETYLPFLLEACNDENQDVRQAAVYGLGVCAEFGG---SVVKPLVGEALSRLNV 933 (1076)
Q Consensus 860 ~r~~al~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~vr~~a~~~lg~l~~~~~---~~~~~~~~~il~~L~~ 933 (1076)
-|..|-.-+.+++...|+.+.|.+++++..+-.++...|.+|...+...|..+....+ ..+.||+.++|+.+..
T Consensus 130 yrf~A~~Gi~DLLl~~g~kilpVLPqLI~plK~al~trd~ev~~~~Lkvlq~lv~~~~~vG~aLVPfYRQlLp~~n~ 206 (262)
T KOG3961|consen 130 YRFVARQGITDLLLAGGEKILPVLPQLILPLKAALVTRDDEVICRTLKVLQQLVVSVGCVGAALVPFYRQLLPVLNT 206 (262)
T ss_pred cchhhhhcHHHHHHhcccccccccHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhccccchhhhhHHHHhhhhhhh
Confidence 3556677788999999999999999999999999999999998888888887776654 6788999999998754
No 288
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=78.24 E-value=59 Score=31.93 Aligned_cols=65 Identities=25% Similarity=0.379 Sum_probs=56.2
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHhhhc---CchHHHHHHHHHHccCCCHHHHHHHHHHHHHhcccC
Q 001442 23 PFETLISHLMSTSNEQRSEAELLFNLCKQQ---DPDSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRD 88 (1076)
Q Consensus 23 ~l~~lL~~~~s~d~~~r~~Ae~~L~~~~~~---~p~~~~~~L~~il~~~~~~~~R~~a~v~Lk~~i~~~ 88 (1076)
-+.++|+...++|..+|..|-+.+....++ +|...++.+..+ .+++++.+|..|-.+++..-.|+
T Consensus 9 yl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~~cvp~lIAL-~ts~~~~ir~~A~~~l~~l~eK~ 76 (187)
T PF12830_consen 9 YLKNILELCLSSDDSVRLAALQVLELILRQGLVNPKQCVPTLIAL-ETSPNPSIRSRAYQLLKELHEKH 76 (187)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChHHHHhHhhhh-hCCCChHHHHHHHHHHHHHHHHh
Confidence 466788888999999999999999886665 898888888886 45699999999999999998886
No 289
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=77.31 E-value=25 Score=31.61 Aligned_cols=73 Identities=16% Similarity=0.165 Sum_probs=52.7
Q ss_pred cchHHHHHHHHHhhc-CCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhh
Q 001442 335 TIVPVASEQLPAYLA-APEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTD 410 (1076)
Q Consensus 335 ~~~~~l~~~l~~~l~-~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~ 410 (1076)
.+++.++|.+...+. +.....|-++++.++.++...+ .-.+-+..++..+......... ...+..++..++..
T Consensus 2 ~~l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~-L~~~~l~~l~~~i~~~~~~~~~--~~~~l~~L~~l~q~ 75 (121)
T PF12397_consen 2 DILPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVP-LSDEVLNALMESILKNWTQETV--QRQALICLIVLCQS 75 (121)
T ss_pred cHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcC-CcHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHc
Confidence 467889999999988 7778999999999999987654 1123455666667666655554 45677788877743
No 290
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=76.71 E-value=20 Score=38.25 Aligned_cols=109 Identities=12% Similarity=0.210 Sum_probs=73.8
Q ss_pred HHHHHHHhhcCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhh
Q 001442 340 ASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQF 419 (1076)
Q Consensus 340 l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 419 (1076)
+...-.+...+.+|...-..+.-++.--++. .+.+..|.+.|++.+|.|.-.|+..++.++..++..+..+.
T Consensus 13 v~KAT~e~nT~enW~~IlDvCD~v~~~~~~~--------kd~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EV 84 (462)
T KOG2199|consen 13 VEKATDEKNTSENWSLILDVCDKVGSDPDGG--------KDCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEV 84 (462)
T ss_pred HHHhcCcccccccHHHHHHHHHhhcCCCccc--------HHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHH
Confidence 3333345566788986666655555433322 34677888999999999999999999999999887664332
Q ss_pred -hhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCc
Q 001442 420 -HPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTP 456 (1076)
Q Consensus 420 -~~~ll~~l~~~l~~~~~~~v~~~a~~aL~~l~~~~~~ 456 (1076)
..++...+...+.+...+.|++..-..+....+.+..
T Consensus 85 sSr~F~~el~al~~~~~h~kV~~k~~~lv~eWsee~K~ 122 (462)
T KOG2199|consen 85 SSRDFTTELRALIESKAHPKVCEKMRDLVKEWSEEFKK 122 (462)
T ss_pred hhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcc
Confidence 2344444445555336788888888888888877654
No 291
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=76.25 E-value=5.4 Score=40.39 Aligned_cols=70 Identities=17% Similarity=0.185 Sum_probs=52.6
Q ss_pred HHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhch
Q 001442 338 PVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGP 413 (1076)
Q Consensus 338 ~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~ 413 (1076)
+.+.+.+.++++|++...|.+|+.++...... ..++.++..+...+.|++..||.+..|+|..++..-++
T Consensus 119 ~~~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~------~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~~~ 188 (213)
T PF08713_consen 119 PEALELLEKWAKSDNEWVRRAAIVMLLRYIRK------EDFDELLEIIEALLKDEEYYVQKAIGWALREIGKKDPD 188 (213)
T ss_dssp GGHHHHHHHHHHCSSHHHHHHHHHCTTTHGGG------CHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT-HH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHh------cCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhCHH
Confidence 56778888899988877777776665444333 45667888888889999999999999999999876443
No 292
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=76.14 E-value=47 Score=34.06 Aligned_cols=102 Identities=18% Similarity=0.153 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhHhhHHhHHHHHHhhccCCChhHHhhhhHHHHHH-HhhcCCCchHHHHHHHHHHHHhhcCC
Q 001442 860 ERRIAICIFDDVAEQCREAALKYYETYLPFLLEACNDENQDVRQAAVYGLGVC-AEFGGSVVKPLVGEALSRLNVVIRHP 938 (1076)
Q Consensus 860 ~r~~al~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~vr~~a~~~lg~l-~~~~~~~~~~~~~~il~~L~~~l~~~ 938 (1076)
....|+.+|+++-+. .-+|.+++.++.++..+ -.-+|.. .+..+..+......=++.|.+.+.++
T Consensus 58 ~~~~a~~LLaq~re~----------~A~~~li~l~~~~~~~~----~~l~GD~~tE~l~~ilasv~~G~~~~L~~li~~~ 123 (249)
T PF06685_consen 58 LHFYALYLLAQFREE----------RALPPLIRLFSQDDDFL----EDLFGDFITEDLPRILASVGDGDIEPLKELIEDP 123 (249)
T ss_pred HHHHHHHHHHHHhhh----------hhHHHHHHHHcCCcchH----HHHHcchhHhHHHHHHHHHhCCCHHHHHHHHhCC
Confidence 355677778776433 44566666665443211 1112221 11111111111111245566666666
Q ss_pred CCCChhhhhHHHHHHHHHHHHHhhcCCCC-CHhhHHHHHHhh
Q 001442 939 NALQPENLMAYDNAVSALGKICQFHRDSI-DAAQVVPAWLNC 979 (1076)
Q Consensus 939 ~~~~~~~~~~~~na~~al~~i~~~~~~~~-~~~~~l~~~l~~ 979 (1076)
+ -+..+|.+|++|++.+...++..= .+-+.++.++..
T Consensus 124 ~----~~~yvR~aa~~aL~~l~~~~~~~Re~vi~~f~~ll~~ 161 (249)
T PF06685_consen 124 D----ADEYVRMAAISALAFLVHEGPISREEVIQYFRELLNY 161 (249)
T ss_pred c----HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 4 467899999999999998887642 344455555554
No 293
>PF10441 Urb2: Urb2/Npa2 family; InterPro: IPR018849 This entry represents a conserved domain found towards the C terminus of proteins involved in ribosome biogenesis, such as the Urb2 protein from yeast [].
Probab=75.76 E-value=97 Score=31.51 Aligned_cols=166 Identities=16% Similarity=0.145 Sum_probs=94.0
Q ss_pred hHHHHHHHhhcCCCchHH-HHHHHHHHHHhhcCC--CCCChhhhhHHHHHHHHHHHHHhhcCCCC----C-HhhHHHHHH
Q 001442 906 VYGLGVCAEFGGSVVKPL-VGEALSRLNVVIRHP--NALQPENLMAYDNAVSALGKICQFHRDSI----D-AAQVVPAWL 977 (1076)
Q Consensus 906 ~~~lg~l~~~~~~~~~~~-~~~il~~L~~~l~~~--~~~~~~~~~~~~na~~al~~i~~~~~~~~----~-~~~~l~~~l 977 (1076)
+.++-.++...+-.+.++ ++.+++.+..+.... ....+....+-...+..++.|+.+++..+ | +-.++..++
T Consensus 9 l~~l~~ll~~~~~~~sq~~ie~~l~~~~~~~~~~~~~~~~~~~~~if~~~~~ll~~il~~hr~~l~~r~hll~~~l~~LL 88 (223)
T PF10441_consen 9 LEILKQLLSSKPWLFSQYNIEQILSILSTLFSSLRNTLSADSSPSIFISLCRLLSSILRHHRFKLSGRFHLLLSVLQRLL 88 (223)
T ss_pred HHHHHHHHhcCchhccchhHHHHHHHHHHHHcccccccccchhHHHHHHHHHHHHHHHHHhHHHHcCCChHHHHHHHHHH
Confidence 344444455444444444 566677776666431 11223455677788888999998887665 2 344444455
Q ss_pred hhCC------CC---CcHHH---HHHHHHHHHHHHhhcC------------------CcccCcCcCchhhHHHHHHHHhc
Q 001442 978 NCLP------IK---GDLIE---AKIVHEQLCSMVERSD------------------SDLLGPNHQYLPKIVSVFAEILC 1027 (1076)
Q Consensus 978 ~~lp------~~---~d~~e---~~~~~~~l~~li~~~~------------------~~~~~~~~~~l~~i~~~~~~~l~ 1027 (1076)
..+- .. ....+ +...-+.|..+++... ...++ .|++.++.-+.....
T Consensus 89 ~~l~~~~~~~~~~~~~~s~~~~~a~~~aRlL~~l~ep~~~~~~~~~~~~l~~~~~~~k~~~~---kh~~~lL~~Yi~~~~ 165 (223)
T PF10441_consen 89 RCLFSPNSQRSSKQLGLSAEAEEAKAFARLLTNLCEPSSVSRSSKKTSSLTSATSSAKKSLR---KHAPYLLANYISLQL 165 (223)
T ss_pred HHHHhcCccccccccccchhhHHHHHHHHHHHHHhCcccccccccccccccHHHHHHHHHHH---hHHHHHHHHHHHHHh
Confidence 4442 00 11112 2233333444443200 00111 255555444444443
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCCHHHHHHHHhhh
Q 001442 1028 GKDLATEQTLSRIVNLLKQLQQTLPPATLASTWSSLQPQQQLALQSIL 1075 (1076)
Q Consensus 1028 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~l~~~~ 1075 (1076)
+... +.+++..+...+-++-...++...+.+.+.|+...|..++.+|
T Consensus 166 ~~~l-~~~vr~~L~pGiy~l~d~~s~~e~~~l~a~Ld~~gr~~fk~Ly 212 (223)
T PF10441_consen 166 KYTL-PPEVREALMPGIYALFDVCSQHELQQLNASLDASGRAVFKSLY 212 (223)
T ss_pred cCCC-CHHHHHHHHHHHHHHHHhCCHHHHHHHHHHcChHHHHHHHHHH
Confidence 3443 5778888888887777777777799999999999999988876
No 294
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=75.72 E-value=1e+02 Score=31.67 Aligned_cols=152 Identities=15% Similarity=0.086 Sum_probs=93.9
Q ss_pred hhcCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHH
Q 001442 347 YLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPA 426 (1076)
Q Consensus 347 ~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~ 426 (1076)
..+..+.+.....+.+|..++.+-. ...+.++..+......++...+..+...+..+...-...+ .++..++..
T Consensus 9 l~~~~~~~~~~~~L~~L~~l~~~~~----~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f--~~L~~~L~~ 82 (234)
T PF12530_consen 9 LGKISDPELQLPLLEALPSLACHKN----VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF--PFLQPLLLL 82 (234)
T ss_pred hcCCCChHHHHHHHHHHHHHhccCc----cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH--HHHHHHHHH
Confidence 3456677888888888888876531 3445566777777777777777777777777665432211 233333322
Q ss_pred HHhh----cc-CCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHh-hcCchhHHHHHHHHHHHHHHHhHhhH
Q 001442 427 LAGA----MD-DFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLL-QNGKQMVQEGALTALASVADSSQEHF 500 (1076)
Q Consensus 427 l~~~----l~-~~~~~~v~~~a~~aL~~l~~~~~~~~l~~~l~~ll~~l~~~l-~~~~~~v~~~al~ai~~l~~~~~~~~ 500 (1076)
+... .. +....+...+...++..+|...+. +-.++++.+..++ ++.+..++..+++++..++..---+|
T Consensus 83 ~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~-----~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~vvd~ 157 (234)
T PF12530_consen 83 LILRIPSSFSSKDEFWECLISIAASIRDICCSRPD-----HGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAEVVDF 157 (234)
T ss_pred HHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh-----hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhhccH
Confidence 1111 11 113445555556778888877553 5567888888888 78888899999999999986544444
Q ss_pred HhhHhhhHH
Q 001442 501 QKYYDAVMP 509 (1076)
Q Consensus 501 ~~~~~~i~~ 509 (1076)
.+....+.+
T Consensus 158 ~s~w~vl~~ 166 (234)
T PF12530_consen 158 YSAWKVLQK 166 (234)
T ss_pred HHHHHHHHH
Confidence 444443333
No 295
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=75.28 E-value=1.3e+02 Score=32.91 Aligned_cols=175 Identities=14% Similarity=0.084 Sum_probs=96.4
Q ss_pred CcchHHHHHHHHHhhcCCChhHHHHHHHHHHHHHh-----hcHHHHHHhHHHHHHHHHhhCCCCChhHH-----HHHHHH
Q 001442 334 NTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAE-----GCAKVMVKNLEQVLSMVLNSFRDPHPRVR-----WAAINA 403 (1076)
Q Consensus 334 ~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~-----~~~~~~~~~l~~i~~~l~~~l~d~~~~vr-----~~a~~~ 403 (1076)
..+-+.++..+...+++.....|++-+.+++.+.. .......+.++.++..+-+....+.+... .+.+.+
T Consensus 56 ~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l 135 (339)
T PF12074_consen 56 SELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNSDSLKFAEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLL 135 (339)
T ss_pred cCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHH
Confidence 45667788888889988888899999999998875 22234445566666666666666654422 121111
Q ss_pred HHHhhhhhchhHHh-h-hh--------h--hhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHH
Q 001442 404 IGQLSTDLGPDLQN-Q-FH--------P--QVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLL 471 (1076)
Q Consensus 404 l~~l~~~~~~~~~~-~-~~--------~--~ll~~l~~~l~~~~~~~v~~~a~~aL~~l~~~~~~~~l~~~l~~ll~~l~ 471 (1076)
. ......+.+.. . .. + -+-+.+...+.+ +.-..-.+.++..+...............+-..++
T Consensus 136 ~--~~~~~~~~~~~~~~~~~~l~~~~kps~ll~~kvyskl~~---~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i 210 (339)
T PF12074_consen 136 A--LSSWKLDKIDSKNISFWSLALDPKPSFLLSEKVYSKLAS---EEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFI 210 (339)
T ss_pred H--hccccchhhhhhhhhhhhhccCCCcchhcCHHHHhccCC---HhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHH
Confidence 1 11100011100 0 00 0 011122222222 22233455666666655543321111355667777
Q ss_pred HHhhcC--chhHHHHHHHHHHHHHHHhHhhHHhhHhhhHHHHHHHHh
Q 001442 472 VLLQNG--KQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILV 516 (1076)
Q Consensus 472 ~~l~~~--~~~v~~~al~ai~~l~~~~~~~~~~~~~~i~~~L~~~l~ 516 (1076)
.++-++ .+.+|+.++.++..+....+..+ -..++..+...+.
T Consensus 211 ~ll~s~~~~~~vR~~A~~~l~~l~~~~~~~l---~~~li~~l~~~l~ 254 (339)
T PF12074_consen 211 YLLCSSNVSWKVRRAALSALKKLYASNPELL---SKSLISGLWKWLS 254 (339)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHhChHHH---HHHHHHHHHHHHH
Confidence 788777 89999999999999888766542 2334444444443
No 296
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=74.53 E-value=20 Score=29.88 Aligned_cols=57 Identities=11% Similarity=0.151 Sum_probs=48.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhhhhhHhhHHhHHHHHHhhccCCChhHHhhhhHHHH
Q 001442 854 KDKTAEERRIAICIFDDVAEQCREAALKYYETYLPFLLEACNDENQDVRQAAVYGLG 910 (1076)
Q Consensus 854 ~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~vr~~a~~~lg 910 (1076)
...+.++|...+.++..++...|..+..-++.++..+-....+++..+...|..++.
T Consensus 28 ~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~ 84 (86)
T PF09324_consen 28 NNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQ 84 (86)
T ss_pred ccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHHh
Confidence 456788999999999999999999888888999999998888888888877776653
No 297
>PLN03205 ATR interacting protein; Provisional
Probab=74.47 E-value=1.3e+02 Score=32.42 Aligned_cols=141 Identities=11% Similarity=0.080 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHhcccCCCCcchhHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhCCcchHhHHhhhHHHHHHHHHHH
Q 001442 122 KKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLIINFIQCLTSSADRDRFQDLLPLMMRTLTES 201 (1076)
Q Consensus 122 ~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~~~~~~~r~~al~~L~~l~~~~~~~l~~~~~~~~~~~l~p~~l~~l~~~ 201 (1076)
.++.++++.+.+...+.-....++..|+.++.-++..+.++++++|..++..+...-..- ...+...+-.+++.+.+.
T Consensus 302 ekVshlYs~~tKiS~G~V~lqtLlEaLLdLC~v~n~a~V~RsLRvLh~vLqHl~~~~~~~--~~~~~~NWvsLfElm~Qi 379 (652)
T PLN03205 302 EKVYHLYSAVTKISYGFVNLKSLVEPLLDLCKAETAVLVHRSLRVLHVLLEHICGDEKRF--EASWDANWHSLFELMNQI 379 (652)
T ss_pred HHHHHHHHHHHHhhCCeeeHHHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHhCCcccc--cccccccHHHHHHHHHHH
Confidence 677888888877655434667899999999999999999999999988877665321100 111122222333333332
Q ss_pred -HhCCCHHHHHHHHHHHHHHHccCcHHHH-HhH--HHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHH
Q 001442 202 -LNNGNEATAQEALELLIELAGTEPRFLR-RQL--VDVVGSMLQIAEAESLEEGTRHLAIEFVITLAE 265 (1076)
Q Consensus 202 -~~~~~~~~~~~~~~~l~~l~~~~~~~~~-~~l--~~l~~~l~~~~~~~~~~~~~r~~al~~l~~l~~ 265 (1076)
....++.++..++.+.+-++........ ..+ ..+++.+.+.+.. +..-.++..|+.++.-+..
T Consensus 380 Av~~TEE~VrLEAvSIMnVIlmssna~~eREkFG~~~VfESiaQLLkk-EaGl~VqKealhLLfLLLN 446 (652)
T PLN03205 380 ASIRTEEDVKLEALSIMNIIVMSTDAYTARESFVSKEVFESISLLLRK-EGGLHVRKEAIHLFYLLLN 446 (652)
T ss_pred HhccchhheeeehhhhhHHhhhccchhHHHHHhcchHHHHHHHHHHHH-hccchhhHHHHHHHHHHHc
Confidence 2345677888888877776654432221 111 2455655555542 2345678888888777665
No 298
>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]
Probab=74.17 E-value=2.1e+02 Score=34.77 Aligned_cols=78 Identities=8% Similarity=0.046 Sum_probs=55.9
Q ss_pred hhHHHHHHHHHHHHHhhcCCCC-CHhhHHHHHHhhCCCCCcHHHHHHHHHHHHHHHhhcCCcccCcCcCchhhHHHHHHH
Q 001442 946 LMAYDNAVSALGKICQFHRDSI-DAAQVVPAWLNCLPIKGDLIEAKIVHEQLCSMVERSDSDLLGPNHQYLPKIVSVFAE 1024 (1076)
Q Consensus 946 ~~~~~na~~al~~i~~~~~~~~-~~~~~l~~~l~~lp~~~d~~e~~~~~~~l~~li~~~~~~~~~~~~~~l~~i~~~~~~ 1024 (1076)
..++++....+.+........+ -++.++-.+++.++..++.+|+....+.+.+++...++.+.+ -.+.+++.+-+
T Consensus 507 LT~~~a~~t~~~~~n~~~~~~~~~lenl~~lvl~~~as~~~~~e~~~ll~~i~rii~~~~~~i~p----l~~~il~~L~~ 582 (947)
T COG5657 507 LTTREAYSTIFDDWNFSVCSKIGLLENLILLVLSLMASPSSLEEREFLLQLISRIIIIDPELIAP----LGSEILQLLDN 582 (947)
T ss_pred HHHHHHHHHHHHhcccccccccccHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhCHHhhhh----hHHHHHHHHHH
Confidence 3556655555555443332333 367788889999999899999999999999999777666655 46678887777
Q ss_pred Hhc
Q 001442 1025 ILC 1027 (1076)
Q Consensus 1025 ~l~ 1027 (1076)
...
T Consensus 583 lv~ 585 (947)
T COG5657 583 LVE 585 (947)
T ss_pred HHH
Confidence 765
No 299
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=73.93 E-value=19 Score=34.13 Aligned_cols=131 Identities=17% Similarity=0.119 Sum_probs=84.3
Q ss_pred chhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhcHHHHHHhH--HHHHHHHHhhCC--C
Q 001442 316 NYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNL--EQVLSMVLNSFR--D 391 (1076)
Q Consensus 316 ~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l--~~i~~~l~~~l~--d 391 (1076)
.+..+.-++.++-...+ +.+...+..++...+...+......++.++..+-.+.++.....+ +.+++.+..... .
T Consensus 21 ~r~~a~v~l~k~l~~~~-~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~~~~~ 99 (157)
T PF11701_consen 21 VRSHALVILSKLLDAAR-EEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPLASRKS 99 (157)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHHHH-CT
T ss_pred HHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHHHhccc
Confidence 56666666666654443 455666777777777665555777788888888888877544332 345666666665 6
Q ss_pred CChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCChh-HHHHHHHHHHH
Q 001442 392 PHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPR-VQAHAASAVLN 449 (1076)
Q Consensus 392 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~-v~~~a~~aL~~ 449 (1076)
++..+..+++.++..-+.. .....-.....++.|-+.++..++.. +|..|.-+|..
T Consensus 100 ~~~~~~~~~lell~aAc~d--~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 100 KDRKVQKAALELLSAACID--KSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp S-HHHHHHHHHHHHHHTTS--HHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcc--HHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence 7888999999998886643 22223345667777777775535555 77777666543
No 300
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.19 E-value=12 Score=38.65 Aligned_cols=106 Identities=20% Similarity=0.302 Sum_probs=67.8
Q ss_pred HHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccC
Q 001442 382 LSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTP 461 (1076)
Q Consensus 382 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~aL~~l~~~~~~~~l~~ 461 (1076)
+..+...+.+++|.||.+|..-+..+... +......+....++.+.+.+.+ ..+ ...|..+|.++.....-. ..
T Consensus 5 l~elv~ll~~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~-~~~--~~~a~~alVnlsq~~~l~--~~ 78 (353)
T KOG2973|consen 5 LVELVELLHSLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKD-LDP--AEPAATALVNLSQKEELR--KK 78 (353)
T ss_pred HHHHHHHhccCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccC-ccc--ccHHHHHHHHHHhhHHHH--HH
Confidence 34566778899999999998776666544 3333356777899999999988 554 566778888887664311 12
Q ss_pred chHHHHHHHHHHhhcCchhHHHHHHHHHHHHH
Q 001442 462 YLDGIVSKLLVLLQNGKQMVQEGALTALASVA 493 (1076)
Q Consensus 462 ~l~~ll~~l~~~l~~~~~~v~~~al~ai~~l~ 493 (1076)
.+..++..++..+.++....-..++..+++++
T Consensus 79 ll~~~~k~l~~~~~~p~~~lad~~cmlL~NLs 110 (353)
T KOG2973|consen 79 LLQDLLKVLMDMLTDPQSPLADLICMLLSNLS 110 (353)
T ss_pred HHHHHHHHHHHHhcCcccchHHHHHHHHHHhc
Confidence 33445566666666664444444444444443
No 301
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=72.89 E-value=31 Score=37.63 Aligned_cols=137 Identities=15% Similarity=0.135 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHHHHHhhhchhhhHHHHHHhHhhhhcCCCCHHHHHHHHHHHHHHHHHhhhhhHhhH-HhHHHHHHhhcc
Q 001442 817 EVFDQVGEILGTLIKTFKAAFLPFFDELSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREAALKYY-ETYLPFLLEACN 895 (1076)
Q Consensus 817 ~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~-~~ll~~l~~~l~ 895 (1076)
.++..++.++..+...-.-... ...-+..++...+...+++.....+++++-++++..+.....+ ...+..++--++
T Consensus 197 ~vRve~~rlLEq~~~aeN~d~v--a~~~~~~Il~lAK~~e~~e~aR~~~~il~~mFKHSeet~~~Lvaa~~lD~vl~~~r 274 (832)
T KOG3678|consen 197 SVRVEAARLLEQILVAENRDRV--ARIGLGVILNLAKEREPVELARSVAGILEHMFKHSEETCQRLVAAGGLDAVLYWCR 274 (832)
T ss_pred HHHHHHHHHHHHHHhhhhhhHH--hhccchhhhhhhhhcCcHHHHHHHHHHHHHHhhhhHHHHHHHHhhcccchheeecc
Confidence 4555666666655544332211 1111233344444455667777788999999998765443322 334445555567
Q ss_pred CCChhHHhhhhHHHHHHHhhcCCCchHHH--HHHHHHHHHhhcCCCCCChhhhhHHHHHHHHHHHHHh
Q 001442 896 DENQDVRQAAVYGLGVCAEFGGSVVKPLV--GEALSRLNVVIRHPNALQPENLMAYDNAVSALGKICQ 961 (1076)
Q Consensus 896 ~~~~~vr~~a~~~lg~l~~~~~~~~~~~~--~~il~~L~~~l~~~~~~~~~~~~~~~na~~al~~i~~ 961 (1076)
..+|.+-+.++.++|.++.+++...+--+ ..+-+.|+.+-... +.-.|-.||-|++.+..
T Consensus 275 Rt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~sk------Del~R~~AClAV~vlat 336 (832)
T KOG3678|consen 275 RTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSK------DELLRLHACLAVAVLAT 336 (832)
T ss_pred cCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcch------HHHHHHHHHHHHhhhhh
Confidence 77899999999999999999987544321 23444454443322 24677788888887764
No 302
>PF11919 DUF3437: Domain of unknown function (DUF3437); InterPro: IPR021843 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 142 to 163 amino acids in length. ; PDB: 3L5Q_6 1VSY_5.
Probab=72.36 E-value=11 Score=31.45 Aligned_cols=59 Identities=25% Similarity=0.228 Sum_probs=45.2
Q ss_pred HHhhhhHHHHHHHhhcCCCchHHHHHHHHHHHHhhcCCCCCChhhhhHHHHHHHHHHHHHhhcCCC
Q 001442 901 VRQAAVYGLGVCAEFGGSVVKPLVGEALSRLNVVIRHPNALQPENLMAYDNAVSALGKICQFHRDS 966 (1076)
Q Consensus 901 vr~~a~~~lg~l~~~~~~~~~~~~~~il~~L~~~l~~~~~~~~~~~~~~~na~~al~~i~~~~~~~ 966 (1076)
.|.+++.|||.++...+..+-++++++|..|.+...++ ..++..+-.+++..-+.+.+.
T Consensus 5 ~rH~~VLGL~Alv~a~Py~vP~w~P~~l~~La~~~~~~-------~~I~~tvk~tl~eFkrtH~D~ 63 (90)
T PF11919_consen 5 RRHAAVLGLSALVLAFPYDVPPWMPEVLEELARHANDP-------QPIRTTVKKTLSEFKRTHQDT 63 (90)
T ss_dssp HHHHHHHHHHHHHTT-S--SS-HHHHHHHHHHTTSSS--------SSHHHHTHHHHHHHHHHTSTT
T ss_pred HHHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHhCCC-------chHHHHHHHHHHHHHHhCccc
Confidence 47788899999999999999999999999998877643 367778888899998888664
No 303
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=72.20 E-value=2.5e+02 Score=34.75 Aligned_cols=139 Identities=13% Similarity=0.119 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHhcccCCCCcccCCCHhH-HHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhcccCC--C-CcchhHHH
Q 001442 72 EARAMAAVLLRKLLTRDDSFLWPRLSLHT-QSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPE--N-GWPELLPF 147 (1076)
Q Consensus 72 ~~R~~a~v~Lk~~i~~~~~~~w~~l~~~~-~~~lk~~Ll~~l~~~~~~~vr~~~~~~i~~ia~~~~~~--~-~w~~ll~~ 147 (1076)
+--+++...|+|.+++++ +.-.-++.+. .-..-..++..+...+++.+++....++..+-.+ .+. + .-...+..
T Consensus 1740 ~~v~m~LtAL~Nli~~nP-dlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan-~~Cv~~~a~~~vL~~ 1817 (2235)
T KOG1789|consen 1740 TKVLMTLTALANLVSANP-DLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATAN-KECVTDLATCNVLTT 1817 (2235)
T ss_pred HHHHHHHHHHHHHHhhCc-chhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcc-cHHHHHHHhhhHHHH
Confidence 356788888999998863 1111122222 2222334455566566777777666666544331 110 0 01225566
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhCCcchHhHHh-hhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHc
Q 001442 148 MFQCVSSDSVKLQESAFLIFAQLIINFIQCLTSSADRDRFQ-DLLPLMMRTLTESLNNGNEATAQEALELLIELAG 222 (1076)
Q Consensus 148 l~~~~~~~~~~~r~~al~~L~~l~~~~~~~l~~~~~~~~~~-~l~p~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~ 222 (1076)
|++++.+ -+..|++++.+|..+.++- + + .+.... .-+-.++..+ ........|..+.+.|.++..
T Consensus 1818 LL~lLHS-~PS~R~~vL~vLYAL~S~~-~-i----~keA~~hg~l~yil~~~---c~~~~~QqRAqaAeLlaKl~A 1883 (2235)
T KOG1789|consen 1818 LLTLLHS-QPSMRARVLDVLYALSSNG-Q-I----GKEALEHGGLMYILSIL---CLTNSDQQRAQAAELLAKLQA 1883 (2235)
T ss_pred HHHHHhc-ChHHHHHHHHHHHHHhcCc-H-H----HHHHHhcCchhhhhHHH---hccCcHHHHHHHHHHHHHhhh
Confidence 6666654 6788999999987762110 0 0 011111 0111222222 235567888889999988865
No 304
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=71.79 E-value=51 Score=39.76 Aligned_cols=76 Identities=9% Similarity=-0.006 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHHhhhchhhhHH-HHHHhHhhhhcCCCCHHHHHHHHHHHHHHHHHhhhhhHhhHHhHHHHHHhhc
Q 001442 819 FDQVGEILGTLIKTFKAAFLPFFD-ELSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREAALKYYETYLPFLLEAC 894 (1076)
Q Consensus 819 ~~~~~~~l~~l~~~~~~~~~~~~~-~l~~~l~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~ll~~l~~~l 894 (1076)
+-.+..+++.+++..+...-...+ .+++.++++|..+.+...-..|+.+|.-++..++..+.+|++.++.++...+
T Consensus 85 Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ip~~l~~~L~~Lf~If~Rl~ 161 (668)
T PF04388_consen 85 RLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHIPSSLGPHLPDLFNIFGRLL 161 (668)
T ss_pred HHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHH
Confidence 446788899999998887655555 3788888888788888888899999999999999999999999999988776
No 305
>COG4912 Predicted DNA alkylation repair enzyme [DNA replication, recombination, and repair]
Probab=71.26 E-value=21 Score=35.13 Aligned_cols=84 Identities=19% Similarity=0.180 Sum_probs=56.9
Q ss_pred HHHHHHHHcCCCcchHHHHHHHHHhhcCCC-hhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHH
Q 001442 323 CLDRLAIALGGNTIVPVASEQLPAYLAAPE-WQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAI 401 (1076)
Q Consensus 323 ~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~-~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~ 401 (1076)
++|.++.+...-...|.+++......++.+ |..|-+...++...-+. .....+++.+-..++|..+.||.+..
T Consensus 102 vvD~la~~~V~~~~~~~li~~~~a~~~~~~~w~rraaiv~~l~~~k~~------~~~~~if~i~E~~l~d~e~fV~KAig 175 (222)
T COG4912 102 VVDTLANHFVGIPLWPDLIEEWAADAEEDNRWERRAAIVHQLVYKKKT------LDLLEIFEIIELLLGDKEFFVQKAIG 175 (222)
T ss_pred HHHHHHHHhhccccCHHHHHHHHhccccchHHHHHHHHHHHHHHhcCc------cchhHHHHHHHHHccChHHHHHHHHH
Confidence 556666665434566777776644445544 55555555555544333 22336888888899999999999999
Q ss_pred HHHHHhhhhhc
Q 001442 402 NAIGQLSTDLG 412 (1076)
Q Consensus 402 ~~l~~l~~~~~ 412 (1076)
|+|.+++.+..
T Consensus 176 WaLrq~~k~~~ 186 (222)
T COG4912 176 WALRQIGKHSN 186 (222)
T ss_pred HHHHHHHhhch
Confidence 99999998543
No 306
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=71.23 E-value=66 Score=28.50 Aligned_cols=74 Identities=15% Similarity=0.130 Sum_probs=52.9
Q ss_pred cchHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhcHHHHHHhHHH--HHHHHHh----hC--CCCChhHHHHHHHHHHH
Q 001442 335 TIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQ--VLSMVLN----SF--RDPHPRVRWAAINAIGQ 406 (1076)
Q Consensus 335 ~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~--i~~~l~~----~l--~d~~~~vr~~a~~~l~~ 406 (1076)
.....++..+...+.+.+|++..-|+..|-.+..+|++.+..++.. ++..++. .. .+.+..||..+...+..
T Consensus 33 ~~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~ 112 (115)
T cd00197 33 VGPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQL 112 (115)
T ss_pred ccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHH
Confidence 4456678888888888999999999999999999998765544432 2222222 11 35578999998887766
Q ss_pred hh
Q 001442 407 LS 408 (1076)
Q Consensus 407 l~ 408 (1076)
++
T Consensus 113 w~ 114 (115)
T cd00197 113 WA 114 (115)
T ss_pred Hh
Confidence 53
No 307
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=71.15 E-value=66 Score=28.79 Aligned_cols=76 Identities=16% Similarity=0.284 Sum_probs=52.5
Q ss_pred hHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhh--hhhhHHHHHhhcc-------CCCChhHHHHHHHHH
Q 001442 377 NLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQF--HPQVLPALAGAMD-------DFQNPRVQAHAASAV 447 (1076)
Q Consensus 377 ~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~--~~~ll~~l~~~l~-------~~~~~~v~~~a~~aL 447 (1076)
.+..++..|.+.|++.++.|+.-++.+|-.++...++.+.... ...++..+.+.-. +.+...||..|-.++
T Consensus 35 ~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~ 114 (122)
T cd03572 35 SCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELI 114 (122)
T ss_pred HHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHH
Confidence 3557899999999999999999999999999988777663221 1223344333222 113456888888887
Q ss_pred HHhhh
Q 001442 448 LNFSE 452 (1076)
Q Consensus 448 ~~l~~ 452 (1076)
..+..
T Consensus 115 ~~if~ 119 (122)
T cd03572 115 KAIFS 119 (122)
T ss_pred HHHhc
Confidence 77654
No 308
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=71.09 E-value=2.7e+02 Score=36.30 Aligned_cols=104 Identities=18% Similarity=0.172 Sum_probs=77.9
Q ss_pred HhhcCCChhHHHHHHHHHHHHHhhcH-HHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhH
Q 001442 346 AYLAAPEWQKHHAALIALAQIAEGCA-KVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVL 424 (1076)
Q Consensus 346 ~~l~~~~~~~r~aal~~l~~l~~~~~-~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll 424 (1076)
+.+...|...|.-|+..|+.+.+... +.....++.......+...|.+..||......+..+...++..+ .+|+..++
T Consensus 48 kkL~KkD~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lkk~l-sp~LK~li 126 (1312)
T KOG0803|consen 48 KKLLKRDETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLKKKL-SPFLKSLI 126 (1312)
T ss_pred HHHhccChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHh-hHHHHhhh
Confidence 34455688889999999998876543 22223344444455566789999999999999999999998887 79999999
Q ss_pred HHHHhhccCCCChhHHHHHHHHHHHhh
Q 001442 425 PALAGAMDDFQNPRVQAHAASAVLNFS 451 (1076)
Q Consensus 425 ~~l~~~l~~~~~~~v~~~a~~aL~~l~ 451 (1076)
|..+-+..| ....|..+|...+....
T Consensus 127 ~~wl~~~~d-~~~~vs~aa~~sf~~~f 152 (1312)
T KOG0803|consen 127 PPWLGGQFD-LDYPVSEAAKASFKDGF 152 (1312)
T ss_pred hhhhheecc-cchHHHHHHHHHHHhhc
Confidence 999988888 67777666666655443
No 309
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=70.63 E-value=59 Score=30.16 Aligned_cols=77 Identities=5% Similarity=0.110 Sum_probs=55.2
Q ss_pred HHHHHHHhhCC-CCChhHHHHHHHHHHHhhhhhchhHHhhh-hhhhHHH-HHhhccCC--CChhHHHHHHHHHHHhhhcC
Q 001442 380 QVLSMVLNSFR-DPHPRVRWAAINAIGQLSTDLGPDLQNQF-HPQVLPA-LAGAMDDF--QNPRVQAHAASAVLNFSENC 454 (1076)
Q Consensus 380 ~i~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~-~~~ll~~-l~~~l~~~--~~~~v~~~a~~aL~~l~~~~ 454 (1076)
..+..|.+.+. ++++.|...|+..+..+++.++..+..+. ...++.. +.+.+... ....|+..+...+....+.+
T Consensus 38 ~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~f 117 (141)
T cd03565 38 DAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWADAF 117 (141)
T ss_pred HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHHHh
Confidence 46677777776 57899998899999999999987764222 2345554 55555431 24589999999999998887
Q ss_pred Cc
Q 001442 455 TP 456 (1076)
Q Consensus 455 ~~ 456 (1076)
..
T Consensus 118 ~~ 119 (141)
T cd03565 118 RG 119 (141)
T ss_pred CC
Confidence 64
No 310
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=70.15 E-value=37 Score=30.36 Aligned_cols=75 Identities=15% Similarity=0.206 Sum_probs=53.7
Q ss_pred hHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHhHhhHHhhHhhhHHHHHHHHhcc-------CCchhhhhHHHHHHHHH
Q 001442 463 LDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNA-------TDKSNRMLRAKSMECIS 535 (1076)
Q Consensus 463 l~~ll~~l~~~l~~~~~~v~~~al~ai~~l~~~~~~~~~~~~~~i~~~L~~~l~~~-------~~~~~~~lr~~a~~~l~ 535 (1076)
+..++..|.+-|++.++.|+..++..|..++...++.|...+..-...+..+..-. .+.....+|..|-|++.
T Consensus 36 ~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~ 115 (122)
T cd03572 36 CQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELIK 115 (122)
T ss_pred HHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHH
Confidence 56788999999999999999999999999999988888777665555444432211 12234557777777766
Q ss_pred HH
Q 001442 536 LV 537 (1076)
Q Consensus 536 ~i 537 (1076)
.+
T Consensus 116 ~i 117 (122)
T cd03572 116 AI 117 (122)
T ss_pred HH
Confidence 55
No 311
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=69.80 E-value=2.8e+02 Score=34.26 Aligned_cols=121 Identities=17% Similarity=0.059 Sum_probs=73.8
Q ss_pred HHHHHHHHhhCCCCChhHHHHHHHHHHHhhhh---h-chhHHhhhhhhhHHHHHhhccC-CCChhHHHHHHHHHHHhhhc
Q 001442 379 EQVLSMVLNSFRDPHPRVRWAAINAIGQLSTD---L-GPDLQNQFHPQVLPALAGAMDD-FQNPRVQAHAASAVLNFSEN 453 (1076)
Q Consensus 379 ~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~---~-~~~~~~~~~~~ll~~l~~~l~~-~~~~~v~~~a~~aL~~l~~~ 453 (1076)
...+|.+...+-++++.+|.=|...+.++... + ..++.....+.+...+... +. ..++.....--..+..+++.
T Consensus 119 ~~~lPG~~~~Lf~~~~~~r~WA~~~~~~l~~~~~~~t~~~~~~av~~~l~~~l~~i-~~~~~~~~~~~~fW~g~~~Il~~ 197 (727)
T PF12726_consen 119 KELLPGMTYFLFDGNPERRRWAERWWQRLKRPPYSITDEEFDWAVLDELSSHLYRI-SPNNYNPDSVIRFWSGFSLILRL 197 (727)
T ss_pred ccccchhhhhhhcCCHHHHHHHHHHHHHcCCCccCCchhhhhHHHHHHHHHHHHHh-ccCCCChhHHHHHHHHHHHHHHH
Confidence 45677888888889999999888888887653 1 2222112233333333333 22 12333333344556666666
Q ss_pred CCcccccCchHH-----HHHHHHHHhhcCchhHHHHHHHHHHHHHHHhHhhH
Q 001442 454 CTPEILTPYLDG-----IVSKLLVLLQNGKQMVQEGALTALASVADSSQEHF 500 (1076)
Q Consensus 454 ~~~~~l~~~l~~-----ll~~l~~~l~~~~~~v~~~al~ai~~l~~~~~~~~ 500 (1076)
++.+.+..++.. ++..++.-+...........+.++..+....|..|
T Consensus 198 ld~~~i~~~l~~~~~~~i~~L~~~hL~~~~~~~l~~lL~~l~~lL~k~~~~F 249 (727)
T PF12726_consen 198 LDKEQITHSLRALELDPIYRLLLNHLSSNLSPPLPILLRCLSILLEKLGSDF 249 (727)
T ss_pred ccHHHHHHHHhccccchHHHHHHHHhhcccchhHHHHHHHHHHHHHhCHHHH
Confidence 666555444333 56666666766645566788999999999998876
No 312
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=69.68 E-value=1.8e+02 Score=32.00 Aligned_cols=72 Identities=15% Similarity=0.204 Sum_probs=53.9
Q ss_pred hhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchH--HHHHHHHHHhhcCchhHHHHHHHHHHHHHH
Q 001442 421 PQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLD--GIVSKLLVLLQNGKQMVQEGALTALASVAD 494 (1076)
Q Consensus 421 ~~ll~~l~~~l~~~~~~~v~~~a~~aL~~l~~~~~~~~l~~~l~--~ll~~l~~~l~~~~~~v~~~al~ai~~l~~ 494 (1076)
-.++..|++.|+...+|.+-.-||.-++.+++..+... ..+. +-=..++.+++++++.||-.|+.|+-.+..
T Consensus 365 yellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk--~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~ 438 (442)
T KOG2759|consen 365 YELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGK--AVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMV 438 (442)
T ss_pred HHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHh--HHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHh
Confidence 36888899999874568888889999999998876421 1111 113457889999999999999999887654
No 313
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.35 E-value=1.6e+02 Score=31.26 Aligned_cols=307 Identities=15% Similarity=0.163 Sum_probs=156.3
Q ss_pred hcCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHh-hhh-hhhHH
Q 001442 348 LAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQN-QFH-PQVLP 425 (1076)
Q Consensus 348 l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~-~~~-~~ll~ 425 (1076)
-.+++-..-.-++.++..+..+-++.+...-..++-.++.. +.++..+-...+.++..-+.. .+... .++ -.+++
T Consensus 116 a~~~~~~~l~ksL~al~~lt~~qpdl~da~g~~vvv~lL~~-~~~~~dlt~~~~~~v~~Ac~~--hE~nrQ~~m~~~il~ 192 (461)
T KOG4199|consen 116 AESPNESVLKKSLEAINSLTHKQPDLFDAEAMAVVLKLLAL-KVESEEVTLLTLQWLQKACIM--HEVNRQLFMELKILE 192 (461)
T ss_pred hhCCchhHHHHHHHHHHHhhcCCcchhccccHHHHHHHHhc-ccchHHHHHHHHHHHHHHHHH--hHHHHHHHHHhhHHH
Confidence 34556666677788888888777765543333333222221 223334444444444443321 11111 122 24666
Q ss_pred HHHhhccCCCChhHHHHHHHHHHHhhhcCCccc----ccCchH-----HHHHHHHHHhhcC-chhHHHHHHHHHHHHHHH
Q 001442 426 ALAGAMDDFQNPRVQAHAASAVLNFSENCTPEI----LTPYLD-----GIVSKLLVLLQNG-KQMVQEGALTALASVADS 495 (1076)
Q Consensus 426 ~l~~~l~~~~~~~v~~~a~~aL~~l~~~~~~~~----l~~~l~-----~ll~~l~~~l~~~-~~~v~~~al~ai~~l~~~ 495 (1076)
.+...|......++...+++++..+.-.-.-.. ...|.. .++..|...++.. ++.+...+..+++.++-.
T Consensus 193 Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr 272 (461)
T KOG4199|consen 193 LILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVR 272 (461)
T ss_pred HHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHH
Confidence 677666553445677888999888864321000 011211 2344455554432 345566677777776543
Q ss_pred hHhhHHhhHhh--hHHHHHHHHhccCCchhhhhHHHHHHHHHHHHHHhchhhhhh------hHHHHHHHHHHHhcCCCCC
Q 001442 496 SQEHFQKYYDA--VMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRD------DAKQVMEVLMSLQGSQMET 567 (1076)
Q Consensus 496 ~~~~~~~~~~~--i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~g~~~~~~------~~~~ii~~l~~~~~~~~~~ 567 (1076)
++|..-... =+..|+.++.++++.+.+.+ +-.|++.+..-.|.+.... -.+.++..+++.. +
T Consensus 273 --~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l---~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~-----~ 342 (461)
T KOG4199|consen 273 --DEICKSIAESGGLDTLLRCIDDSNEQGNRTL---AKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHS-----D 342 (461)
T ss_pred --HHHHHHHHHccCHHHHHHHHhhhchhhHHHH---HHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcC-----C
Confidence 222221111 13455566655444444433 3445555544445443322 2455666655422 1
Q ss_pred CChhhHHHHHHHHHHHHHhccCcccchhh-hhHHHHHhccCCCCccccCCCCCccccCCCCcccchhhcCCceeeecchh
Q 001442 568 DDPTTSYMLQAWARLCKCLGQDFLPYMSV-VMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSV 646 (1076)
Q Consensus 568 ~~~~~~~~~~~~~~l~~~~~~~~~~~l~~-i~~~ll~~~~~~~~~~~~~~d~d~~~~~~d~~~~~~~~~~~~~~~v~~~~ 646 (1076)
+..+.+.++.++.-+|-..++.-..+++. .....++.+...|. .
T Consensus 343 ~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~-----------------------------------~ 387 (461)
T KOG4199|consen 343 DPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPV-----------------------------------A 387 (461)
T ss_pred ChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcH-----------------------------------H
Confidence 23366666667776766555543333321 22223333332221 0
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccccHHHHHHHhhhcccccCCHHHHHHHHHHHHHHH
Q 001442 647 LEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELL 703 (1076)
Q Consensus 647 ~~~k~~A~~~l~~i~~~~~~~~~p~l~~~~~~l~~~l~~~~~~~vr~~a~~~l~~L~ 703 (1076)
..-+..||.++-.++....+.-.|++..=++.++..-.. .|+.++.+|-.+|..|-
T Consensus 388 a~vQrnac~~IRNiv~rs~~~~~~~l~~GiE~Li~~A~~-~h~tce~~akaALRDLG 443 (461)
T KOG4199|consen 388 AQVQRNACNMIRNIVVRSAENRTILLANGIEKLIRTAKA-NHETCEAAAKAALRDLG 443 (461)
T ss_pred HHHHHHHHHHHHHHHHhhhhccchHHhccHHHHHHHHHh-cCccHHHHHHHHHHhcC
Confidence 111346888999998876666666666555655554332 48899988888888774
No 314
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=68.82 E-value=14 Score=29.45 Aligned_cols=55 Identities=18% Similarity=0.283 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHhHH--HHHHHHHhhC-CCCChhHHHHHHHHHHHhhhhh
Q 001442 355 KHHAALIALAQIAEGCAKVMVKNLE--QVLSMVLNSF-RDPHPRVRWAAINAIGQLSTDL 411 (1076)
Q Consensus 355 ~r~aal~~l~~l~~~~~~~~~~~l~--~i~~~l~~~l-~d~~~~vr~~a~~~l~~l~~~~ 411 (1076)
.+++++.++|.++...... +.++ ++++.+++.. +.+...+|..|+.+|+-++...
T Consensus 3 ~lKaaLWaighIgss~~G~--~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~ 60 (73)
T PF14668_consen 3 ELKAALWAIGHIGSSPLGI--QLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTE 60 (73)
T ss_pred HHHHHHHHHHhHhcChHHH--HHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCH
Confidence 4689999999998754321 2222 5777777765 4778899999999999998754
No 315
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=68.01 E-value=12 Score=31.55 Aligned_cols=60 Identities=17% Similarity=0.177 Sum_probs=45.4
Q ss_pred CCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCC-ChhHHHHHHHHHHHhh
Q 001442 391 DPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQ-NPRVQAHAASAVLNFS 451 (1076)
Q Consensus 391 d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~-~~~v~~~a~~aL~~l~ 451 (1076)
+++..+|.-|...++.++..++... ....+.++..+.+.+.|.. +...+-.|..+|..+-
T Consensus 17 ~~h~~LRd~AA~lL~~I~~~~~~~~-~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~lG 77 (92)
T PF07571_consen 17 DNHWALRDFAASLLAQICRKFSSSY-PTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSALG 77 (92)
T ss_pred cchHHHHHHHHHHHHHHHHHhcccc-chHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 5688999999999999999887654 3456678888888888732 3346677877777773
No 316
>PF08146 BP28CT: BP28CT (NUC211) domain; InterPro: IPR012954 This C-terminal domain is found in BAP28-like nucleolar proteins []. The bap28 mutation leads to abnormalities in the brain, starting at midsomitogenesis stages. Mutant zebrafish embryos display excessive apoptosis, especially in the central nervous system (CNS) that results in death. The mutation affects a gene that encodes a large protein with high similarity to the uncharacterised human protein BAP28 and lower similarity to yeast Utp10. Utp10 is a component of a nucleolar U3 small nucleolar RNA-containing RNP complex that is required for transcription of ribosomal DNA and for processing of 18 S rRNA. Zebrafish Bap28 is also required for rRNA transcription and processing, with a major effect on 18S rRNA maturation. Bap28 is therefore required for cell survival in the CNS through its role in rRNA synthesis and processing [].
Probab=67.83 E-value=36 Score=32.09 Aligned_cols=82 Identities=13% Similarity=0.169 Sum_probs=59.0
Q ss_pred hhHHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHH-HhcCCCCCCChhhHHHHHHHHHHHHHhccCcccchhhhhHHHHH
Q 001442 525 MLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMS-LQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQ 603 (1076)
Q Consensus 525 ~lr~~a~~~l~~i~~~~g~~~~~~~~~~ii~~l~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~i~~~ll~ 603 (1076)
.+-..+++|+-.+...+....|.|.+..++++... +....-.......-.....+..+...++.-|.||...+++...+
T Consensus 36 ~vE~~v~~~~~~lV~KLnE~~FRPlF~~l~dWA~~~l~~~~~~~~~~R~itfy~l~~~l~e~LKslf~~Y~~~ll~~~~~ 115 (153)
T PF08146_consen 36 EVESSVISAFVSLVLKLNEATFRPLFLKLVDWATSGLPKSDSSGSRARLITFYRLLNALAEKLKSLFTPYFSYLLDNAVD 115 (153)
T ss_pred HHHHHHHHHHHHHHHHcccchhHhHHHHHHHHHcccCCcccCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556788888888888777899999999998765 22111111122334456677788899999999999999999887
Q ss_pred hcc
Q 001442 604 SAQ 606 (1076)
Q Consensus 604 ~~~ 606 (1076)
.+.
T Consensus 116 ~L~ 118 (153)
T PF08146_consen 116 LLK 118 (153)
T ss_pred HHH
Confidence 774
No 317
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=67.70 E-value=70 Score=28.37 Aligned_cols=74 Identities=12% Similarity=0.182 Sum_probs=50.2
Q ss_pred hHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhh-hhHHHHHhh-----ccCCCChhHHHHHHHHHHHh
Q 001442 377 NLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHP-QVLPALAGA-----MDDFQNPRVQAHAASAVLNF 450 (1076)
Q Consensus 377 ~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~-~ll~~l~~~-----l~~~~~~~v~~~a~~aL~~l 450 (1076)
....++..|...+.++++.+..-|+..+..++..+++.+...... .++..+++. .....+..||..+...+...
T Consensus 34 ~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w 113 (115)
T cd00197 34 GPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLW 113 (115)
T ss_pred cHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHH
Confidence 345688899999999999999999999999999998776432211 222223221 11114667888877766554
No 318
>KOG0929 consensus Guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.49 E-value=4e+02 Score=35.10 Aligned_cols=257 Identities=15% Similarity=0.192 Sum_probs=141.3
Q ss_pred chhhHHHHHHHHHHHHHhcccCCCCcchhHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhCCcchHhHHhhhHHHHH
Q 001442 116 SAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLIINFIQCLTSSADRDRFQDLLPLMM 195 (1076)
Q Consensus 116 ~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~~~~~~~r~~al~~L~~l~~~~~~~l~~~~~~~~~~~l~p~~l 195 (1076)
.+..||..+.+|++.-. ...|..++.-+-....+.+..+.+.++..+..++...+...-. .....|.+.++-+.
T Consensus 1049 ~s~~Irelv~rC~~~ni-----kSGWk~if~i~~~aA~~~~~~iv~~~fe~v~~i~~~~f~~~~~-~~~~sf~d~v~cl~ 1122 (1514)
T KOG0929|consen 1049 SSAEIRELVVRCISSNI-----KSGWKNIFKIFTTAASDSSKNIVELAFETVSKILQELFENVFP-QEMDSFKDCVKCLE 1122 (1514)
T ss_pred CcchhHHHHHhhhhhhh-----hhhhhHHHHHHHHhhccchhhHHHHhHHHHHHHHHHhhhhhch-hhhHHHHHHHHHHH
Confidence 45678888999988222 2589999999988888888888888888887654444333211 11244555444444
Q ss_pred HHHHHHHhCCC-HHHHHHHHHHHHHHHcc-CcH------------HHHHhHHHHHHHHHHHhcCCCcchhHHHHHHHHHH
Q 001442 196 RTLTESLNNGN-EATAQEALELLIELAGT-EPR------------FLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVI 261 (1076)
Q Consensus 196 ~~l~~~~~~~~-~~~~~~~~~~l~~l~~~-~~~------------~~~~~l~~l~~~l~~~~~~~~~~~~~r~~al~~l~ 261 (1076)
+.......... -........|-..+.+. ..+ +...+++.++.+-.-+. +....+|..+++.+.
T Consensus 1123 ~F~~~~~~~~~s~~aI~~lr~ca~k~~e~~~~~~~~~~~~~~~~~~~~~wfP~l~~ls~i~~---~~~~~vr~~al~vlF 1199 (1514)
T KOG0929|consen 1123 EFTKNLGFPDDSLNAIRFLRLCALKLAEGVYNEKLKVGKDSEFDVWNSGWFPMLFQLSKIIN---DYRLEVRKRALEVLF 1199 (1514)
T ss_pred HHHHhcCCCccchHHHHHHHHHHHHhccccchhhcccccccccccceeeeehhHhhhhHHhh---ccHHHHHHHHHHHHH
Confidence 44332221111 11111122222233332 111 12223444444222222 235678999999988
Q ss_pred HHHHhhcccchhhccchhhHHHHHHHHHHhhcCCCCCccccCCCCCCcccCCCCchhhHHHHHHHHHHHcCCCcchHHHH
Q 001442 262 TLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVAS 341 (1076)
Q Consensus 262 ~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~dd~~~~~~~~e~~d~~e~~~~~~a~~~l~~l~~~~~~~~~~~~l~ 341 (1076)
.+... .+.. -..++.+.++..++.......-+ | + . .
T Consensus 1200 ~il~~---~g~~--F~~~~We~v~~~~fpIF~~~~~~--~------~----~---~------------------------ 1235 (1514)
T KOG0929|consen 1200 DILKE---HGDD--FSKEFWEDVFRILFPIFDNVKLD--E------D----E---S------------------------ 1235 (1514)
T ss_pred HHHHh---hhhh--ccHHHHHHHHHheeecccccCcc--c------c----h---h------------------------
Confidence 88773 2221 13456777777555443222110 0 0 0 0
Q ss_pred HHHHHhhcCCChhHHHHHHHHHHHHHhh---cHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhh
Q 001442 342 EQLPAYLAAPEWQKHHAALIALAQIAEG---CAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQ 418 (1076)
Q Consensus 342 ~~l~~~l~~~~~~~r~aal~~l~~l~~~---~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~ 418 (1076)
...+|. .+....+|..+++- ..+.+...++.++..+..+.+.+|..+-.....|+.++....+..+.+.
T Consensus 1236 -------~~~eW~-~tT~~~Al~~~v~lf~~~~~~l~~lL~~~~~ll~~ci~~~n~~la~~g~~cl~~l~~~n~~~fse~ 1307 (1514)
T KOG0929|consen 1236 -------EKDEWL-STTCNHALQALVDLFTQFFKQLNNLLPKVLGLLVGCIKQDNQQLARIGTSCLLQLVSSNGEKFSEE 1307 (1514)
T ss_pred -------hhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhHHhHHHHHHHHHHhcccccCHh
Confidence 001121 22333333333332 2233345566777777778888888888899999999998888777666
Q ss_pred hhhhhHHHHHhhccC
Q 001442 419 FHPQVLPALAGAMDD 433 (1076)
Q Consensus 419 ~~~~ll~~l~~~l~~ 433 (1076)
.+..+...+.+.+.-
T Consensus 1308 ~Wde~~~~~~e~~~~ 1322 (1514)
T KOG0929|consen 1308 DWDEICNCILEAFKT 1322 (1514)
T ss_pred hHHHHHHHHHHHHHh
Confidence 777777777666654
No 319
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=67.37 E-value=7.4 Score=26.54 Aligned_cols=28 Identities=21% Similarity=0.195 Sum_probs=23.7
Q ss_pred HHHHHHhhCCCCChhHHHHHHHHHHHhh
Q 001442 381 VLSMVLNSFRDPHPRVRWAAINAIGQLS 408 (1076)
Q Consensus 381 i~~~l~~~l~d~~~~vr~~a~~~l~~l~ 408 (1076)
.++.+.+.+.++++.++..++++|+.++
T Consensus 13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 13 GLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 4667777777889999999999999875
No 320
>PF05327 RRN3: RNA polymerase I specific transcription initiation factor RRN3; InterPro: IPR007991 This family consists of several eukaryotic proteins which are homologous to the Saccharomyces cerevisiae RRN3 protein. RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in the S. cerevisiae [] RNA polymerase I complex within the nucleolus. In mammalian cells, the phosphorylation state of Rrn3 regulates rDNA transcription by determining the steady-state concentration of the Rrn3 [].; PDB: 3TJ1_B.
Probab=66.81 E-value=2.1e+02 Score=33.88 Aligned_cols=138 Identities=14% Similarity=0.096 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHHHhhhhhHhhHHhHHHHHHhhcc-CCChhHHhhhhHHHHHHHhhcCCCchHHHHHHHHHHHHhhcCCC
Q 001442 861 RRIAICIFDDVAEQCREAALKYYETYLPFLLEACN-DENQDVRQAAVYGLGVCAEFGGSVVKPLVGEALSRLNVVIRHPN 939 (1076)
Q Consensus 861 r~~al~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~-~~~~~vr~~a~~~lg~l~~~~~~~~~~~~~~il~~L~~~l~~~~ 939 (1076)
...-+..+...+..+... ...++..+++.-= ..++.++..-..-++.++...+ .|+..++..|++.+..+.
T Consensus 53 l~~~L~~L~~~Vs~Ld~~----~~~LV~ail~~~W~~~~~~~v~~y~~Fl~~Lvsa~~----~yl~~vl~~LV~~f~p~~ 124 (563)
T PF05327_consen 53 LIRWLKALSSCVSLLDSS----CKQLVEAILSLNWLGRDEDFVEAYIQFLINLVSAQP----KYLSPVLSMLVKNFIPPP 124 (563)
T ss_dssp HHHHHHHHHHGGGGG-SC----CHHHHHHHHT-TGGGS-HHHHHHHHHHHHHHHHH-G----GGHHHHHHHHHHGGGS-H
T ss_pred HHHHHHHHHHHHHHhhhH----HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHhhH----HHHHHHHHHHHHhccCCC
Confidence 333344444444444333 4566666665521 4567777776666788776654 368888888888886542
Q ss_pred CC--------ChhhhhHHHHHHHHHHHHHhhcCCCCCHhhHHHHHHhhCCCCCcHHHHHH-HHHHHHHHHhhcCCcccC
Q 001442 940 AL--------QPENLMAYDNAVSALGKICQFHRDSIDAAQVVPAWLNCLPIKGDLIEAKI-VHEQLCSMVERSDSDLLG 1009 (1076)
Q Consensus 940 ~~--------~~~~~~~~~na~~al~~i~~~~~~~~~~~~~l~~~l~~lp~~~d~~e~~~-~~~~l~~li~~~~~~~~~ 1009 (1076)
.. .+.-..+.+.+..++.+|+...|.. ...+.+.+.+.+|.......... -.+.++++. .+.|.+-.
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~vH~~L~~Il~lvP~s--~~~L~~~l~~~FP~~~~~~~~~~~Yv~NlL~l~-~Y~P~L~~ 200 (563)
T PF05327_consen 125 SSIAEWPGCPPEKRREIYERVHDALQKILRLVPTS--PSFLIPILVQNFPHKRKSKDEHVNYVRNLLRLT-EYCPELRS 200 (563)
T ss_dssp HHHHH---------------HHHHHHHHHHH-GGG--HHHHHHHHHHTS--TTS-HHHHHHHHHHHHHHH-CC-GGGHH
T ss_pred ccccccchhhhhhhhhhHHHHHHHHHHHHHHcCCC--HHHHHHHHHHcCcCCCCChHHHHHHHHHHHHHH-cchHHHHH
Confidence 11 1122356678899999999998876 67788889999998755544433 346777887 56566543
No 321
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=66.75 E-value=7.4 Score=26.56 Aligned_cols=28 Identities=29% Similarity=0.421 Sum_probs=24.1
Q ss_pred HHHHHHhhccCCChhHHhhhhHHHHHHH
Q 001442 886 YLPFLLEACNDENQDVRQAAVYGLGVCA 913 (1076)
Q Consensus 886 ll~~l~~~l~~~~~~vr~~a~~~lg~l~ 913 (1076)
.+|.+++.+.++++.+++.|+++++.++
T Consensus 13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 13 GLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 5677777888889999999999999886
No 322
>PF05327 RRN3: RNA polymerase I specific transcription initiation factor RRN3; InterPro: IPR007991 This family consists of several eukaryotic proteins which are homologous to the Saccharomyces cerevisiae RRN3 protein. RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in the S. cerevisiae [] RNA polymerase I complex within the nucleolus. In mammalian cells, the phosphorylation state of Rrn3 regulates rDNA transcription by determining the steady-state concentration of the Rrn3 [].; PDB: 3TJ1_B.
Probab=66.75 E-value=2.7e+02 Score=33.00 Aligned_cols=54 Identities=26% Similarity=0.157 Sum_probs=35.3
Q ss_pred hHHhHHHHHHhhccCC--ChhHHhhhhHHHHHHHhhcCCCchHHHHHHHHHHHHhh
Q 001442 882 YYETYLPFLLEACNDE--NQDVRQAAVYGLGVCAEFGGSVVKPLVGEALSRLNVVI 935 (1076)
Q Consensus 882 ~~~~ll~~l~~~l~~~--~~~vr~~a~~~lg~l~~~~~~~~~~~~~~il~~L~~~l 935 (1076)
+...++..+++.+.++ .+.+|++|+.=||-....++..-..++..++..|...+
T Consensus 343 ~~~~Fl~~L~~~~~~~~~~~~~R~~A~~YlaSflaRAk~v~~~~v~~~l~~L~~w~ 398 (563)
T PF05327_consen 343 LADAFLSFLWKIAFDPNQPPVTRQAAAAYLASFLARAKFVPLSTVRSVLSYLCDWL 398 (563)
T ss_dssp HHHHHHHHHHHHHH-SSS-HHHHHHHHHHHHHHHHHBTT--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 4456666666666554 56789998877888887777655566777777776655
No 323
>KOG2085 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=66.61 E-value=1.2e+02 Score=33.00 Aligned_cols=182 Identities=18% Similarity=0.260 Sum_probs=95.6
Q ss_pred CChHHHHHHHHH-hcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHccCCCHHHHHHHHHHHHHhcccCCCCcccCCC
Q 001442 19 PDSAPFETLISH-LMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLS 97 (1076)
Q Consensus 19 ~~~~~l~~lL~~-~~s~d~~~r~~Ae~~L~~~~~~~p~~~~~~L~~il~~~~~~~~R~~a~v~Lk~~i~~~~~~~w~~l~ 97 (1076)
+..+....++-. +.|||-+. +-|.+.+ . ..|+.-|+.++. +.+|.-|++-=.+|.++..+. ...-
T Consensus 147 phLqlvye~~Lrf~~sp~~d~-~vaK~yi----d---~~FvlkLLdLFd-SEDpRERe~LKT~LhrIygKf-----l~~r 212 (457)
T KOG2085|consen 147 PHLQLVYEFLLRFLESPDFDP-SVAKKYI----D---QKFVLKLLDLFD-SEDPREREFLKTILHRIYGKF-----LVHR 212 (457)
T ss_pred hHHHHHHHHHHHHHhCcccCH-HHHHHHh----h---HHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHH-----hhhH
Confidence 344566665444 45776433 2333333 2 237788888775 689999999999999998874 2222
Q ss_pred HhHHHHHHHHHHHHHh-hcchhhHHHHHHHHHHHHHh-cccCCC-Ccch-hHHHHHHhhc-------------------C
Q 001442 98 LHTQSSLKSMLLQSIQ-LESAKSISKKLCDTVSELAS-NILPEN-GWPE-LLPFMFQCVS-------------------S 154 (1076)
Q Consensus 98 ~~~~~~lk~~Ll~~l~-~~~~~~vr~~~~~~i~~ia~-~~~~~~-~w~~-ll~~l~~~~~-------------------~ 154 (1076)
+=.+..+-+.+++.+. ++....|.. +-.++|.|.. ...|-. +-.- +...|+.+-+ .
T Consensus 213 ~firk~iNNif~~FIyEte~hnGIaE-LLEIlgSiIngfAlPlKEEhkiFL~rvLipLhk~k~l~~yh~QLaYcivQfve 291 (457)
T KOG2085|consen 213 PFIRKSINNIFLRFIYETERHNGIAE-LLEILGSIINGFALPLKEEHKLFLVRVLIPLHKPKSLSLYHKQLAYCIVQFVE 291 (457)
T ss_pred HHHHHhhcchhhhhcccccccCCHHH-HHHHHHHhcCcccCcchhHHHHHHHHhhhccccCCCccccccccceeeeeeec
Confidence 2333334344444442 233334443 3344444432 222311 0000 1222222211 1
Q ss_pred CCHHHHHHHHHHHHHH---------------HHHHHHhhCCcchHhHHhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 001442 155 DSVKLQESAFLIFAQL---------------IINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIE 219 (1076)
Q Consensus 155 ~~~~~r~~al~~L~~l---------------~~~~~~~l~~~~~~~~~~~l~p~~l~~l~~~~~~~~~~~~~~~~~~l~~ 219 (1076)
.++.+-+..++.|-.. +..+++.++ +..|....-++..-+..++.++...+++.|+..++.
T Consensus 292 Kd~kl~~~VIrglLK~WP~tnS~KEVmFL~ElEEILe~ie----p~eFqk~~~PLf~qia~c~sS~HFQVAEraL~~wnN 367 (457)
T KOG2085|consen 292 KDPKLTETVIRGLLKYWPKTNSSKEVMFLNELEEILEVIE----PSEFQKIMVPLFRQIARCVSSPHFQVAERALYLWNN 367 (457)
T ss_pred cCccccHHHHHHHHHhcCCCCCcceeeeHhhHHHHHHhcC----HHHHHHHhHHHHHHHHHHcCChhHHHHHHHHHHHhh
Confidence 2223333333333222 233333333 566777777777888888988888999988887763
No 324
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=66.30 E-value=17 Score=29.04 Aligned_cols=55 Identities=13% Similarity=0.090 Sum_probs=42.0
Q ss_pred HHHHHHHHHHhhhhhchhHHhhhh--hhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcC
Q 001442 397 RWAAINAIGQLSTDLGPDLQNQFH--PQVLPALAGAMDDFQNPRVQAHAASAVLNFSENC 454 (1076)
Q Consensus 397 r~~a~~~l~~l~~~~~~~~~~~~~--~~ll~~l~~~l~~~~~~~v~~~a~~aL~~l~~~~ 454 (1076)
.++|+|++|.++..-.. + .++ ..+++.+++.....+...+|..|+++|+.+....
T Consensus 4 lKaaLWaighIgss~~G-~--~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~ 60 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLG-I--QLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTE 60 (73)
T ss_pred HHHHHHHHHhHhcChHH-H--HHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCH
Confidence 46899999999864221 1 233 3689999988877688899999999999987653
No 325
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=65.80 E-value=23 Score=35.19 Aligned_cols=66 Identities=14% Similarity=0.131 Sum_probs=48.8
Q ss_pred HHHHHhhcCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhc
Q 001442 342 EQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLG 412 (1076)
Q Consensus 342 ~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~ 412 (1076)
+.+..+..+++...|.+|+..+...... ....+.++..+...+.|++..||.+..|+|..++...+
T Consensus 108 ~~~~~w~~s~~~~~rR~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~~~ 173 (197)
T cd06561 108 DLLEEWAKSENEWVRRAAIVLLLRLIKK-----ETDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKKDP 173 (197)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHh-----cccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCH
Confidence 5677888888765666665555443322 24567788888888999999999999999999987643
No 326
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.76 E-value=4.6e+02 Score=35.21 Aligned_cols=130 Identities=15% Similarity=0.123 Sum_probs=88.6
Q ss_pred HHHHhhccCCChhHHhhhhHHHHHHHhhcCCCchHHHHHHHHHHHHhhcCCCCCChhhhhHHHHHHHHHHHHHhhcCCCC
Q 001442 888 PFLLEACNDENQDVRQAAVYGLGVCAEFGGSVVKPLVGEALSRLNVVIRHPNALQPENLMAYDNAVSALGKICQFHRDSI 967 (1076)
Q Consensus 888 ~~l~~~l~~~~~~vr~~a~~~lg~l~~~~~~~~~~~~~~il~~L~~~l~~~~~~~~~~~~~~~na~~al~~i~~~~~~~~ 967 (1076)
-.++.-+..++|..|-.+..++|+++...++. +++..+.+..+.-+...+ +...|-.-.-++|.+-++.++-.
T Consensus 879 ~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~--~f~a~~aq~~fdklas~~-----d~i~R~ghslalg~lhkyvgs~~ 951 (2067)
T KOG1822|consen 879 TLIVNSLINPNPKLRCAAAEALARLAQVVGSA--PFVASLAQNSFDKLASAR-----DPITRTGHSLALGCLHKYVGSIG 951 (2067)
T ss_pred HHHhhhhccCChHHHHHHHHHHHHHHHhcccc--chHHHHHHHHHHHHHhcC-----CcHHHHHHHHHHHHHHHhccCCC
Confidence 34455567789999999999999999998875 667777777777765432 34667777888999988887765
Q ss_pred ---CHhhHHHHHHhhCCCCCcHHHHHHHHHHHHHHHhhcCCcccCcCcCchhhHHHHHHHHhcC
Q 001442 968 ---DAAQVVPAWLNCLPIKGDLIEAKIVHEQLCSMVERSDSDLLGPNHQYLPKIVSVFAEILCG 1028 (1076)
Q Consensus 968 ---~~~~~l~~~l~~lp~~~d~~e~~~~~~~l~~li~~~~~~~~~~~~~~l~~i~~~~~~~l~~ 1028 (1076)
++..-+..++...-.-.+.....-....+.-++....|.... ++..-+..+...+-.
T Consensus 952 s~qhl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~----~ve~tlsl~~~lLls 1011 (2067)
T KOG1822|consen 952 SGQHLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRV----LVEPTLSLCLKLLLS 1011 (2067)
T ss_pred CchhcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehh----hHHHHHHHHHHHcCC
Confidence 466666667666543333334445556666666666665544 566666666666653
No 327
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=65.22 E-value=38 Score=32.07 Aligned_cols=37 Identities=11% Similarity=0.248 Sum_probs=26.3
Q ss_pred HHHHHHHHHHH-HHhHhhHHhhHhhhHHHHHHHHhccC
Q 001442 483 EGALTALASVA-DSSQEHFQKYYDAVMPFLKAILVNAT 519 (1076)
Q Consensus 483 ~~al~ai~~l~-~~~~~~~~~~~~~i~~~L~~~l~~~~ 519 (1076)
..|+.....+. ...++-+.|+++.+.|.+.+.+.++.
T Consensus 60 ~kA~~IF~~L~~~l~~efl~~~~~~L~~~~~~~L~~p~ 97 (174)
T PF04510_consen 60 VKAFHIFICLPMPLYGEFLIPFMENLLPEISKVLLPPE 97 (174)
T ss_pred HHHHHHHHhCCchhhhhHHHHHHHHHHHHHHHHcCCch
Confidence 44666666655 44556667999999999999887753
No 328
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=65.19 E-value=69 Score=42.22 Aligned_cols=139 Identities=17% Similarity=0.200 Sum_probs=86.8
Q ss_pred HHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHh
Q 001442 371 AKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNF 450 (1076)
Q Consensus 371 ~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~aL~~l 450 (1076)
...+..|++.++...-..+..+++.|+.-+......+-..+... +-+.++..|+..+.+ .+..-...|...|..+
T Consensus 426 ~~vL~~~f~siL~la~~Ll~S~e~~v~~FG~~~Y~~lF~~fds~----~qqeVv~~Lvthi~s-g~~~ev~~aL~vL~~L 500 (1426)
T PF14631_consen 426 SEVLKDYFPSILSLAQSLLRSKEPSVREFGSHLYKYLFKEFDSY----CQQEVVGALVTHIGS-GNSQEVDAALDVLCEL 500 (1426)
T ss_dssp HHHHTTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS-HH----HHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhccch----hHHHHHHHHHHHHcC-CcHHHHHHHHHHHHHH
Confidence 34556788888888888899999999999998888887776332 345677777777755 3443346888888888
Q ss_pred hhcCCcccccCchHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHhHhhHHhhHhhhHHHHHHHHh
Q 001442 451 SENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILV 516 (1076)
Q Consensus 451 ~~~~~~~~l~~~l~~ll~~l~~~l~~~~~~v~~~al~ai~~l~~~~~~~~~~~~~~i~~~L~~~l~ 516 (1076)
++... +.+.|| ..++..++..+.+-+..--+..+..++.++...+..-...-+.+.-.+.+.+.
T Consensus 501 ~~~~~-~~l~~f-a~~l~giLD~l~~Ls~~qiR~lf~il~~La~~~~~~~s~i~del~ivIRKQLs 564 (1426)
T PF14631_consen 501 AEKNP-SELQPF-ATFLKGILDYLDNLSLQQIRKLFDILCTLAFSDSSSSSSIQDELHIVIRKQLS 564 (1426)
T ss_dssp HHH-H-HHHHHT-HHHHHGGGGGGGG--HHHHHHHHHHHHHHHHHHSS---HHHHHHHHHHHHHHT
T ss_pred HhccH-HHHHHH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCcccchhhHHHHHHHHHHhhc
Confidence 87644 345565 34556666666665544445678888887754432212222344334444443
No 329
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=64.17 E-value=1.5e+02 Score=29.64 Aligned_cols=143 Identities=15% Similarity=0.139 Sum_probs=77.4
Q ss_pred HHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCC-CCChhHHHHH-HHHHHHhhhhhchhH
Q 001442 338 PVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFR-DPHPRVRWAA-INAIGQLSTDLGPDL 415 (1076)
Q Consensus 338 ~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~-d~~~~vr~~a-~~~l~~l~~~~~~~~ 415 (1076)
......+.++..+..-..|..|+..++........ ..++.+...+. -++..+.... ..+++.+..
T Consensus 50 ~~~~~l~~~L~~~~~~E~~~la~~il~~~~~~~~~-------~~~~~~~~~~~~~~~W~~~D~~~~~~~~~~~~------ 116 (213)
T PF08713_consen 50 EELYELADELWESGYREERYLALLILDKRRKKLTE-------EDLELLEKWLPDIDNWATCDSLCSKLLGPLLK------ 116 (213)
T ss_dssp HHHHHHHHHHHCSSCHHHHHHHHHHHHHCGGG--H-------HHHHHHHHCCCCCCCHHHHHHHTHHHHHHHHH------
T ss_pred hHHHHHHHHHcCCchHHHHHHHHHHhHHHhhhhhH-------HHHHHHHHHhccCCcchhhhHHHHHHHHHHHH------
Confidence 34445555666776777777777777654432221 12333333332 2344444333 333333321
Q ss_pred HhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHH
Q 001442 416 QNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADS 495 (1076)
Q Consensus 416 ~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~aL~~l~~~~~~~~l~~~l~~ll~~l~~~l~~~~~~v~~~al~ai~~l~~~ 495 (1076)
.+ +...+.+..-+.+ +++-+|..++.++..+... .+.+.++..+...+.+++..++..+-.+|..++..
T Consensus 117 --~~-~~~~~~~~~W~~s-~~~w~rR~~~v~~~~~~~~-------~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~ 185 (213)
T PF08713_consen 117 --KH-PEALELLEKWAKS-DNEWVRRAAIVMLLRYIRK-------EDFDELLEIIEALLKDEEYYVQKAIGWALREIGKK 185 (213)
T ss_dssp --HH-GGHHHHHHHHHHC-SSHHHHHHHHHCTTTHGGG-------CHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT
T ss_pred --hh-HHHHHHHHHHHhC-CcHHHHHHHHHHHHHHHHh-------cCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHh
Confidence 11 4566666677777 6777777766554433322 45567777777777888888887777777776665
Q ss_pred hHhhHHhhH
Q 001442 496 SQEHFQKYY 504 (1076)
Q Consensus 496 ~~~~~~~~~ 504 (1076)
-++...+|+
T Consensus 186 ~~~~v~~~l 194 (213)
T PF08713_consen 186 DPDEVLEFL 194 (213)
T ss_dssp -HHHHHHHH
T ss_pred CHHHHHHHH
Confidence 444444443
No 330
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=63.23 E-value=27 Score=29.53 Aligned_cols=57 Identities=16% Similarity=0.145 Sum_probs=47.3
Q ss_pred CCHHHHHHHHHHHHHHHHHhhhhhHhhHHhHHHHHHhhccCCC--hhHHhhhhHHHHHH
Q 001442 856 KTAEERRIAICIFDDVAEQCREAALKYYETYLPFLLEACNDEN--QDVRQAAVYGLGVC 912 (1076)
Q Consensus 856 ~~~~~r~~al~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~--~~vr~~a~~~lg~l 912 (1076)
.....|..|..+++.+++.++.......+.+...+.+.+.|+. ....-.|+.||..+
T Consensus 18 ~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~l 76 (92)
T PF07571_consen 18 NHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSAL 76 (92)
T ss_pred chHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 3457899999999999999998777778899999999998764 56777788887777
No 331
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=62.44 E-value=2e+02 Score=29.98 Aligned_cols=141 Identities=23% Similarity=0.235 Sum_probs=84.7
Q ss_pred HHHHHHHhhcCCC-----hhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHh-hCCCCChhHHHHHHHHHHHhhhhhch
Q 001442 340 ASEQLPAYLAAPE-----WQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLN-SFRDPHPRVRWAAINAIGQLSTDLGP 413 (1076)
Q Consensus 340 l~~~l~~~l~~~~-----~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~-~l~d~~~~vr~~a~~~l~~l~~~~~~ 413 (1076)
.+|.+-..+.+++ ...+ .....|+.+++..+ .+.+..++....+ ..++.+.-++.. +..+..
T Consensus 112 ~LP~ll~~~d~~~~i~~~~~~~-~~A~~La~~a~~~~---~~~La~il~~ya~~~fr~~~dfl~~v--------~~~l~~ 179 (262)
T PF14225_consen 112 LLPRLLHAFDDPNPIQPDQECI-EIAEALAQVAEAQG---LPNLARILSSYAKGRFRDKDDFLSQV--------VSYLRE 179 (262)
T ss_pred HHHHHHHHhcccccccccHHHH-HHHHHHHHHHHhCC---CccHHHHHHHHHhcCCCCHHHHHHHH--------HHHHHH
Confidence 3444444444444 3333 33355666664322 1344555544333 344444444433 223333
Q ss_pred hHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCchhHHHHHHHHHHHHH
Q 001442 414 DLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVA 493 (1076)
Q Consensus 414 ~~~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~aL~~l~~~~~~~~l~~~l~~ll~~l~~~l~~~~~~v~~~al~ai~~l~ 493 (1076)
.+..++...++-.++..|.+ +.+-+|..+...|..++...+.+ .|.-++++..+.++++++.. ..|+..+..+.
T Consensus 180 ~f~P~~~~~~l~~Ll~lL~n-~~~w~~~~~L~iL~~ll~~~d~~--~~~~~dlispllrlL~t~~~---~eAL~VLd~~v 253 (262)
T PF14225_consen 180 AFFPDHEFQILTFLLGLLEN-GPPWLRRKTLQILKVLLPHVDMR--SPHGADLISPLLRLLQTDLW---MEALEVLDEIV 253 (262)
T ss_pred HhCchhHHHHHHHHHHHHhC-CcHHHHHHHHHHHHHHhccccCC--CCcchHHHHHHHHHhCCccH---HHHHHHHHHHH
Confidence 22234556777778888888 77889999999999999887654 56888999999999988753 44666666665
Q ss_pred HHhHh
Q 001442 494 DSSQE 498 (1076)
Q Consensus 494 ~~~~~ 498 (1076)
...|.
T Consensus 254 ~~s~s 258 (262)
T PF14225_consen 254 TRSGS 258 (262)
T ss_pred hhccc
Confidence 55443
No 332
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=62.40 E-value=1.9e+02 Score=29.71 Aligned_cols=130 Identities=12% Similarity=0.241 Sum_probs=75.5
Q ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHhhC-CcchHhHHhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccC------
Q 001442 152 VSSDSVKLQESAFLIFAQLIINFIQCLT-SSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTE------ 224 (1076)
Q Consensus 152 ~~~~~~~~r~~al~~L~~l~~~~~~~l~-~~~~~~~~~~l~p~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~------ 224 (1076)
++++++.+.+.++.+...+...+++.+. ++.....+..+ ..+=..+...+.+.++.++..++.++..++-..
T Consensus 2 l~d~d~~v~K~~I~~~~~iy~~~~~~i~~~~~~~~~W~~~-~~lK~~Il~~~~~~~~gvk~~~iKFle~vIl~qs~~~~~ 80 (239)
T PF11935_consen 2 LNDEDPAVVKRAIQCSTSIYPLVFRWICVNPSDEQLWESM-NELKDRILSLWDSENPGVKLAAIKFLERVILVQSPGSSD 80 (239)
T ss_dssp CT-SSHHHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHH-HHHHHHHHHGGGSSSHHHHHHHHHHHHHHHHHTS---TT
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHH-HHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCCC
Confidence 4567788888888888887777666662 22222222211 111122223345667778877777776655211
Q ss_pred --------------------c----HHHHHhHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHhhcccchhhccchhh
Q 001442 225 --------------------P----RFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQF 280 (1076)
Q Consensus 225 --------------------~----~~~~~~l~~l~~~l~~~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ 280 (1076)
| ..+...-..+++.++..+.....+..+-..++..|..+++. . +.|
T Consensus 81 ~~~~~~~~~d~SL~~vp~~Hp~l~~~~Le~Ea~~lL~~Ll~~l~~~~i~~~~~~a~insL~~Iak~---R-------P~~ 150 (239)
T PF11935_consen 81 SPPRRGSPNDFSLSSVPPNHPLLNPQQLEAEANGLLDRLLDVLQSPHISSPLLTAIINSLSNIAKQ---R-------PQF 150 (239)
T ss_dssp S---GGGTTS--GGGS-TT-SSS-HHHHHHHHHHHHHHHHHHHC-TT--HHHHHHHHHHHHHHHHH---S-------GGG
T ss_pred CccccccccCCCHHHcCCCCCcCCHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHH---h-------hHH
Confidence 0 12223344788888888876554566666778888888872 2 457
Q ss_pred HHHHHHHHHHhh
Q 001442 281 INRLFAILMSML 292 (1076)
Q Consensus 281 ~~~l~~~l~~~l 292 (1076)
...+++.+..+-
T Consensus 151 ~~~Il~~ll~~~ 162 (239)
T PF11935_consen 151 MSRILPALLSFN 162 (239)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC
Confidence 788888887763
No 333
>KOG1851 consensus Uncharacterized conserved protein [Function unknown]
Probab=61.45 E-value=5e+02 Score=34.15 Aligned_cols=102 Identities=13% Similarity=0.060 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhchhhhHHHHHHhHhhhhcCCCCHHHHHHHHHHHHHHHHHhhhhhHhhHHhHHHHHHhhcc
Q 001442 816 EEVFDQVGEILGTLIKTFKAAFLPFFDELSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREAALKYYETYLPFLLEACN 895 (1076)
Q Consensus 816 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~ 895 (1076)
-.++..++.++..+.+...-.+.+ +..-+.......++.+....-.|+-.+|.++-..+-.+..++++.+..+....+
T Consensus 1583 i~vre~Aa~~Lsgl~~~s~~~~~~--~k~d~~~~~~~s~s~~~i~~HgavlgLgA~VlafPy~vP~wip~~L~~Ls~fa~ 1660 (1710)
T KOG1851|consen 1583 IEVREEAAKCLSGLLQGSKFQFVS--DKRDTTSNILQSKSKDEIKAHGAVLGLGAIVLAFPYVVPLWIPKPLMNLSSFAR 1660 (1710)
T ss_pred HHHHHHHHHHHHHHHhccccccch--HhhhhhhhhhhhcchHHHHhhhhHHHHHHHHHhccccchhhhHHHHHHHHhhcC
Confidence 357888999999988776554433 111111111111222333344577778888877665544455565555555555
Q ss_pred CCChhHHhhhhHHHHHHHhhcCCCc
Q 001442 896 DENQDVRQAAVYGLGVCAEFGGSVV 920 (1076)
Q Consensus 896 ~~~~~vr~~a~~~lg~l~~~~~~~~ 920 (1076)
++ ..+++.+-.++.+.-+...+..
T Consensus 1661 e~-~~i~~tvkktvseFrrth~D~W 1684 (1710)
T KOG1851|consen 1661 ES-AAIKQTVKKTVSEFRRTHADTW 1684 (1710)
T ss_pred Cc-hHHHHHHHHHHHHHHHHhhhhh
Confidence 44 5667777777777666555443
No 334
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=59.99 E-value=34 Score=32.47 Aligned_cols=131 Identities=17% Similarity=0.159 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHHHHHhhhchhhhHHHHHHhHhhhhcCCCCHHHHHHHHHHHHHHHHHhhhhhHhh--HHhHHHHHHhhc
Q 001442 817 EVFDQVGEILGTLIKTFKAAFLPFFDELSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREAALKY--YETYLPFLLEAC 894 (1076)
Q Consensus 817 ~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~--~~~ll~~l~~~l 894 (1076)
.++..+.-++..+....++.+...+...+...+ .+...+....++.++..++...+...... -+.+++.++..+
T Consensus 20 ~~r~~a~v~l~k~l~~~~~~~~~~~~~~i~~~~----~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~ 95 (157)
T PF11701_consen 20 EVRSHALVILSKLLDAAREEFKEKISDFIESLL----DEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPLA 95 (157)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----CCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH----ccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHHH
Confidence 355566666666666666666554444433332 12222356678888888888766655542 367777777777
Q ss_pred c--CCChhHHhhhhHHHHHHHhhcC--CCchHHHHHHHHHHHHhhcCCCCCChhhhhHHHHHHHHHHH
Q 001442 895 N--DENQDVRQAAVYGLGVCAEFGG--SVVKPLVGEALSRLNVVIRHPNALQPENLMAYDNAVSALGK 958 (1076)
Q Consensus 895 ~--~~~~~vr~~a~~~lg~l~~~~~--~~~~~~~~~il~~L~~~l~~~~~~~~~~~~~~~na~~al~~ 958 (1076)
. .++..+...++.++...|.... ..+..++ ++.|.+.+...+ ++..+|--|+-++++
T Consensus 96 ~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~~~---~~~L~~~~~~~~----~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 96 SRKSKDRKVQKAALELLSAACIDKSCRTFISKNY---VSWLKELYKNSK----DDSEIRVLAAVGLCK 156 (157)
T ss_dssp H-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHHHC---HHHHHHHTTTCC-----HH-CHHHHHHHHHH
T ss_pred hcccCCHHHHHHHHHHHHHHHccHHHHHHHHHHH---HHHHHHHHcccc----chHHHHHHHHHHHhc
Confidence 7 6788888888888888876543 3344444 444555553331 111256556665554
No 335
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=59.32 E-value=1e+02 Score=29.62 Aligned_cols=101 Identities=10% Similarity=0.061 Sum_probs=65.6
Q ss_pred ChhHHHHHHHHHHHHHhhcHHHHH---------Hh-HHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhh
Q 001442 352 EWQKHHAALIALAQIAEGCAKVMV---------KN-LEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHP 421 (1076)
Q Consensus 352 ~~~~r~aal~~l~~l~~~~~~~~~---------~~-l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ 421 (1076)
+...|.-++..+..+.++.+..+. .. -..+++.+.+.+..+++.+-..++..+..+...+...+ +...+
T Consensus 35 ~~~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~~~L-k~ele 113 (168)
T PF12783_consen 35 DERSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFRSHL-KLELE 113 (168)
T ss_pred hHHHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 345555666666666655554333 11 13456777777766678888889999888888877766 55667
Q ss_pred hhHHHHHh-hccCCC-ChhHHHHHHHHHHHhhhc
Q 001442 422 QVLPALAG-AMDDFQ-NPRVQAHAASAVLNFSEN 453 (1076)
Q Consensus 422 ~ll~~l~~-~l~~~~-~~~v~~~a~~aL~~l~~~ 453 (1076)
.+++.++. .+.... ...-|..+..++..++..
T Consensus 114 ~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~~ 147 (168)
T PF12783_consen 114 VFLSHIILRILESDNSSLWQKELALEILRELCKD 147 (168)
T ss_pred HHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHhC
Confidence 77777776 444312 235667788888888753
No 336
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=58.68 E-value=33 Score=38.40 Aligned_cols=138 Identities=13% Similarity=0.164 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHhHH-HHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhh-hhhhHHHHHhhcc
Q 001442 355 KHHAALIALAQIAEGCAKVMVKNLE-QVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQF-HPQVLPALAGAMD 432 (1076)
Q Consensus 355 ~r~aal~~l~~l~~~~~~~~~~~l~-~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~-~~~ll~~l~~~l~ 432 (1076)
.--|++.+|-.++....-.-....+ .+...++..|.+|+.+|...+...+..+.--+.+-- ..+ -..++..+.+.+.
T Consensus 405 ~~~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~-~~fL~~~iIdvl~~~v~ 483 (743)
T COG5369 405 DFVAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLG-AGFLEKSIIDVLVNLVM 483 (743)
T ss_pred HHHHHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchH-HHHHHhhHHHHHHHHhh
Confidence 3446677777776654421111111 477888899999888887777666665554443211 222 3356666777666
Q ss_pred CCCChhHHHHHHHHHHHhhhcCCcc-cccCchHHHHHHHHHHhhcCchhHHHHHHHHHHHHHH
Q 001442 433 DFQNPRVQAHAASAVLNFSENCTPE-ILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVAD 494 (1076)
Q Consensus 433 ~~~~~~v~~~a~~aL~~l~~~~~~~-~l~~~l~~ll~~l~~~l~~~~~~v~~~al~ai~~l~~ 494 (1076)
. ++...|....|.+..+.-++... .+.+....=+..++...+++...+++..+..+..+.-
T Consensus 484 s-KDdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc 545 (743)
T COG5369 484 S-KDDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTC 545 (743)
T ss_pred c-chhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhccc
Confidence 6 67789999999999888777543 2333344447888999999999999999999988653
No 337
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=58.52 E-value=87 Score=32.78 Aligned_cols=104 Identities=19% Similarity=0.194 Sum_probs=66.6
Q ss_pred HHHhhcCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhh
Q 001442 344 LPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQV 423 (1076)
Q Consensus 344 l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l 423 (1076)
+.+++.+.++.+|.+|+.-+-.+..+-...+..+-...++.+.+.+.+..+ -+-|..++..++..- ...+..+..+
T Consensus 8 lv~ll~~~sP~v~~~AV~~l~~lt~~~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~--~l~~~ll~~~ 83 (353)
T KOG2973|consen 8 LVELLHSLSPPVRKAAVEHLLGLTGRGLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKE--ELRKKLLQDL 83 (353)
T ss_pred HHHHhccCChHHHHHHHHHHhhccccchhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhH--HHHHHHHHHH
Confidence 446778889999999987666555442333444445677888888888877 334556777776542 2223344556
Q ss_pred HHHHHhhccCCCChhHHHHHHHHHHHhhh
Q 001442 424 LPALAGAMDDFQNPRVQAHAASAVLNFSE 452 (1076)
Q Consensus 424 l~~l~~~l~~~~~~~v~~~a~~aL~~l~~ 452 (1076)
+..++..+.+ +........|..|.++..
T Consensus 84 ~k~l~~~~~~-p~~~lad~~cmlL~NLs~ 111 (353)
T KOG2973|consen 84 LKVLMDMLTD-PQSPLADLICMLLSNLSR 111 (353)
T ss_pred HHHHHHHhcC-cccchHHHHHHHHHHhcc
Confidence 6667777777 545566667777776654
No 338
>cd00872 PI3Ka_I Phosphoinositide 3-kinase (PI3K) class I, accessory domain ; PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3K class I prefer phosphoinositol (4,5)-bisphosphate as a substrate. Mammalian members interact with active Ras. They form heterodimers with adapter molecules linking them to different signaling pathways.
Probab=57.64 E-value=1.2e+02 Score=29.18 Aligned_cols=32 Identities=9% Similarity=0.158 Sum_probs=15.1
Q ss_pred hhhHHHHHHHHHHHHHhcccCCCCcchhHHHHHHhhc
Q 001442 117 AKSISKKLCDTVSELASNILPENGWPELLPFMFQCVS 153 (1076)
Q Consensus 117 ~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~ 153 (1076)
++.||+.+.+.+..+.. .+.-..+|.|+|.++
T Consensus 84 d~~VR~yAV~~L~~~sd-----~eL~~yL~QLVQaLK 115 (171)
T cd00872 84 DEHVREFAVRCLEKLSD-----DELLQYLLQLVQVLK 115 (171)
T ss_pred CHHHHHHHHHHHHhCCH-----HHHHHHHHHHHHHHH
Confidence 45555555555554322 233444555555443
No 339
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=57.61 E-value=27 Score=34.27 Aligned_cols=56 Identities=9% Similarity=0.148 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHhhH--HhHHHHHHhhccCCChhHHhhhhHHHHHHH
Q 001442 858 AEERRIAICIFDDVAEQCREAALKYY--ETYLPFLLEACNDENQDVRQAAVYGLGVCA 913 (1076)
Q Consensus 858 ~~~r~~al~~l~~l~~~~~~~~~~~~--~~ll~~l~~~l~~~~~~vr~~a~~~lg~l~ 913 (1076)
...|.+++++++.++++....+..++ .+++|..++.+..++.--+..|++.+|.+.
T Consensus 160 EyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLrIme~gSElSktvaifI~qkil 217 (315)
T COG5209 160 EYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLRIMELGSELSKTVAIFIFQKIL 217 (315)
T ss_pred ceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 44688999999999999877766643 788999999888777766777777776654
No 340
>PF14961 BROMI: Broad-minded protein
Probab=57.19 E-value=1.6e+02 Score=37.21 Aligned_cols=136 Identities=10% Similarity=0.187 Sum_probs=86.8
Q ss_pred HHHHHHHhhcchhhHHHHHHHHHHHHHhcccC-CCCcchhHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhCCcchH
Q 001442 106 SMLLQSIQLESAKSISKKLCDTVSELASNILP-ENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLIINFIQCLTSSADR 184 (1076)
Q Consensus 106 ~~Ll~~l~~~~~~~vr~~~~~~i~~ia~~~~~-~~~w~~ll~~l~~~~~~~~~~~r~~al~~L~~l~~~~~~~l~~~~~~ 184 (1076)
+.+++.+..+....||..+.+.+..+--.+.. ...|+.+-..|...+.++++.+.+.+++..+..+..- .-....
T Consensus 164 q~i~d~ld~~~P~evR~eAlq~Lc~~p~SDVls~E~W~~L~~~L~~~LsDpD~~is~~~L~f~Ak~fssS----pl~~tr 239 (1296)
T PF14961_consen 164 QLIADKLDPGQPKEVRLEALQILCSAPPSDVLSCESWSVLRENLTDALSDPDPEISDASLRFHAKMFSSS----PLNMTR 239 (1296)
T ss_pred HHHHHhcCCCCchHHHHHHHHHHhcCChhhccccccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccCC----chhhhH
Confidence 55667777677889999999888766554433 3589999999999999999999999999987763210 000012
Q ss_pred hHHhhhHHHHHHHHH----------HHH--hCCCHHHHHHHHHHHHHHHccCcH-H---HHHhHHHHHHHHHHHhcC
Q 001442 185 DRFQDLLPLMMRTLT----------ESL--NNGNEATAQEALELLIELAGTEPR-F---LRRQLVDVVGSMLQIAEA 245 (1076)
Q Consensus 185 ~~~~~l~p~~l~~l~----------~~~--~~~~~~~~~~~~~~l~~l~~~~~~-~---~~~~l~~l~~~l~~~~~~ 245 (1076)
..|..++..+-..+. ..+ +.++....-..++.+++.-+..|. + -.+++..+++..+..+..
T Consensus 240 EiYtsL~~~l~~~Fls~~~~lptl~~giDi~~~~~~rLLk~vrLlneyq~E~ps~WiRhpeK~mEeIVEsTLsLLs~ 316 (1296)
T PF14961_consen 240 EIYTSLANHLESYFLSQKNSLPTLSSGIDITFPDIERLLKKVRLLNEYQKEVPSFWIRHPEKYMEEIVESTLSLLST 316 (1296)
T ss_pred HHHHHHHHHHHHHHHhccccCccccccccccCccHHHHHHHHHHHHHHHHhcchhhhcCcHHHHHHHHHHHHHHhcc
Confidence 223333322211110 001 112334455677888887766665 2 246788899988887754
No 341
>PF14838 INTS5_C: Integrator complex subunit 5 C-terminus
Probab=56.85 E-value=4.2e+02 Score=31.82 Aligned_cols=64 Identities=23% Similarity=0.273 Sum_probs=41.1
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHccCCCHHHHHHHHHHHHHhcc
Q 001442 23 PFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQRSPHPEARAMAAVLLRKLLT 86 (1076)
Q Consensus 23 ~l~~lL~~~~s~d~~~r~~Ae~~L~~~~~~~p~~~~~~L~~il~~~~~~~~R~~a~v~Lk~~i~ 86 (1076)
.+.++-..+++.+.....-|-+.|.-+..++|+-++..+.++|..+++++-.-.+..++.....
T Consensus 182 ~~~~Lc~~lL~~n~~r~~w~~rLL~lL~~~~Psi~~~~~~~lL~~A~~~~~l~lli~L~~~~~~ 245 (696)
T PF14838_consen 182 HITELCKELLSLNRKRQQWAHRLLCLLSSQHPSIAIEAISYLLTKAQNPEHLALLIRLYAGLSV 245 (696)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHhcCCCchHHHHHHHHHHhcCCHHHHHHHHHHHhcccC
Confidence 3344455556665544444445555566658888788888888888887777666666665554
No 342
>KOG2256 consensus Predicted protein involved in nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis]
Probab=55.05 E-value=4.1e+02 Score=31.22 Aligned_cols=178 Identities=15% Similarity=0.244 Sum_probs=90.2
Q ss_pred hhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcC-----c-----hhHHHHHHHHH
Q 001442 420 HPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNG-----K-----QMVQEGALTAL 489 (1076)
Q Consensus 420 ~~~ll~~l~~~l~~~~~~~v~~~a~~aL~~l~~~~~~~~l~~~l~~ll~~l~~~l~~~-----~-----~~v~~~al~ai 489 (1076)
...++..+...=.. ++..+|..|+-+|..+|.......+.+.+.... +..+.+. + ...+..++..+
T Consensus 280 lk~liK~~V~vWst-ge~~~rv~Afl~l~~l~~~~~~~~l~~vlk~mY---~afv~nsk~~~~~tl~~i~Fl~~slvEL~ 355 (661)
T KOG2256|consen 280 LKKLIKAVVHVWST-GEESLRVLAFLCLIDLCRKFKSTCLDPVLKTMY---LAFVRNSKFVTVNTLPLINFLQNSLVELL 355 (661)
T ss_pred HHHHHHHHheeecc-CCcchhhHHHHHHHHHHHHhhhHHHHHHHHHHH---HHHHHhCCCCCCcccchhHHHHHHHHHHh
Confidence 33444444433334 567888999999999988877554443333322 2222222 1 12333333333
Q ss_pred HHHHHHhHhhHHhhHhhhHHHHHHHHhccCCchhhhhH-HHHHHHHHH---HHH-Hhc-hhhhhhhHHHHHHHHHHHhcC
Q 001442 490 ASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLR-AKSMECISL---VGM-AVG-KDKFRDDAKQVMEVLMSLQGS 563 (1076)
Q Consensus 490 ~~l~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~~~~lr-~~a~~~l~~---i~~-~~g-~~~~~~~~~~ii~~l~~~~~~ 563 (1076)
|.=...+-..---|+.++--+|...+.....++...+- .+-+.|+-. +.. +.| .....|.+..++++++....-
T Consensus 356 ~ld~~~~Yq~aF~yIrQLAihLRnam~~k~K~s~~~VYnWqfi~cL~lW~rvisf~~~~~s~lq~LvYpLvQvi~GvirL 435 (661)
T KOG2256|consen 356 GLDLQVSYQHAFVYIRQLAIHLRNAMITKNKESVQSVYNWQYVHCLDLWLRVISFANGSASQLQPLVYPLVQVILGVIRL 435 (661)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccHhhhhhhhhHHHHHHHHHhhh
Confidence 32222211111236666666666666553322211111 122333332 222 333 345667777777776663221
Q ss_pred -CCCCCChhhHHHHHHHHHHHHHhccCcccchhhhhHHHH
Q 001442 564 -QMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLL 602 (1076)
Q Consensus 564 -~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~i~~~ll 602 (1076)
.-...-|+|-.++..+.++++..| -|.|.++.+++.+-
T Consensus 436 ipT~qy~PLRlhcir~Li~Ls~ssg-~fIPi~~ll~Eml~ 474 (661)
T KOG2256|consen 436 IPTPQYYPLRLHCIRSLISLSRSSG-TFIPLSPLLVEMLK 474 (661)
T ss_pred cCcccchhHHHHHHHHHHHHHhhcC-ceeecHHHHHHHHH
Confidence 111234688888888888888776 46777666655543
No 343
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.47 E-value=1.1e+02 Score=34.68 Aligned_cols=94 Identities=21% Similarity=0.124 Sum_probs=68.3
Q ss_pred hHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHhHhhHHhhH--hhhHHHHHHHHhccCCchhhhhHHHHHHHHHHHHHH
Q 001442 463 LDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYY--DAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMA 540 (1076)
Q Consensus 463 l~~ll~~l~~~l~~~~~~v~~~al~ai~~l~~~~~~~~~~~~--~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~i~~~ 540 (1076)
-...+..|.+.+++.++.+.-.|+..|-+++..||..|...+ ..+++.+.....+. +-+..+|.+++..|-....+
T Consensus 36 ~~eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~emVk~~k~~--~~~~~Vr~kiL~LI~~W~~a 113 (470)
T KOG1087|consen 36 PKEAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNEMVKRPKNK--PRDLKVREKILELIDTWQQA 113 (470)
T ss_pred cHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccccC--CcchhHHHHHHHHHHHHHHH
Confidence 347888899999988889999999999999999999886333 24566555554432 14567899999999999988
Q ss_pred hch-hhhhhhHHHHHHHHH
Q 001442 541 VGK-DKFRDDAKQVMEVLM 558 (1076)
Q Consensus 541 ~g~-~~~~~~~~~ii~~l~ 558 (1076)
++. +...|.+..+...+.
T Consensus 114 f~~~~~~~~~~~~~y~~l~ 132 (470)
T KOG1087|consen 114 FCGPDGYLPDYYQIYDELR 132 (470)
T ss_pred ccCCCCcchhHHHHHHHHH
Confidence 875 444455555555443
No 344
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=54.41 E-value=1.6e+02 Score=26.32 Aligned_cols=74 Identities=12% Similarity=0.238 Sum_probs=53.2
Q ss_pred HhHHHHHHHHHhhCC-CCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcC
Q 001442 376 KNLEQVLSMVLNSFR-DPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENC 454 (1076)
Q Consensus 376 ~~l~~i~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~aL~~l~~~~ 454 (1076)
.++..++|.+..++. ...+..|-++...+++++...+- ..+.+..++..+++.... ... ...+..+|..++..-
T Consensus 2 ~~l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L--~~~~l~~l~~~i~~~~~~-~~~--~~~~l~~L~~l~q~q 76 (121)
T PF12397_consen 2 DILPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPL--SDEVLNALMESILKNWTQ-ETV--QRQALICLIVLCQSQ 76 (121)
T ss_pred cHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCC--cHHHHHHHHHHHHhcccc-chh--HHHHHHHHHHHHHcc
Confidence 356789999999998 78899999999999999976532 134555566666655554 222 467778888888655
No 345
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=52.88 E-value=1.6e+02 Score=31.84 Aligned_cols=76 Identities=13% Similarity=0.126 Sum_probs=54.7
Q ss_pred HHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhcHHHHHHhH--HHHHHHHHhhCC-CCChhHHHHHHHHHHHhhhhhch
Q 001442 338 PVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNL--EQVLSMVLNSFR-DPHPRVRWAAINAIGQLSTDLGP 413 (1076)
Q Consensus 338 ~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l--~~i~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~ 413 (1076)
...+..+...+++.++.+---|+..+++++.+|++.+...+ .++...+...+. ..++.|+......+..+++.+..
T Consensus 44 kd~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv~eWsee~K~ 122 (462)
T KOG2199|consen 44 KDCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIESKAHPKVCEKMRDLVKEWSEEFKK 122 (462)
T ss_pred HHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcc
Confidence 44666677778888999999999999999999997554322 233344444444 67899998888888888776654
No 346
>PF03542 Tuberin: Tuberin; InterPro: IPR018515 Initiation of eukaryotic mRNA transcription requires melting of promoter DNA with the help of the general transcription factors TFIIE and TFIIH. In higher eukaryotes, the general transcription factor TFIIE consists of two subunits: the large alpha subunit (IPR002853 from INTERPRO) and the small beta (IPR003166 from INTERPRO). TFIIE beta has been found to bind to the region where the promoter starts to open to be single-stranded upon transcription initiation by RNA polymerase II. The approximately 120-residue central core domain of TFIIE beta plays a role in double-stranded DNA binding of TFIIE []. The TFIIE beta central core DNA-binding domain consists of three helices with a beta hairpin at the C terminus, resembling the winged helix proteins. It shows a novel double-stranded DNA-binding activity where the DNA-binding surface locates on the opposite side to the previously reported winged helix motif by forming a positively charged furrow []. This domain is found in Tuberin proteins. ; GO: 0005096 GTPase activator activity, 0043547 positive regulation of GTPase activity
Probab=52.43 E-value=3.3e+02 Score=29.94 Aligned_cols=146 Identities=13% Similarity=0.169 Sum_probs=80.3
Q ss_pred HHHHHHhhc-CCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCC--------------ChhHHHHHHHHHH
Q 001442 341 SEQLPAYLA-APEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDP--------------HPRVRWAAINAIG 405 (1076)
Q Consensus 341 ~~~l~~~l~-~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~--------------~~~vr~~a~~~l~ 405 (1076)
+..+...++ ..||.+-.-.+.-|.....+-.=.....++.+...+++.+.|. ...+......+|.
T Consensus 143 ~~~il~~L~~e~dWeV~s~VL~hLp~qL~Nk~Lf~~~~I~~L~~~Lc~~i~d~~~~~~l~~~p~~~~~~D~~~~~~~~Ls 222 (356)
T PF03542_consen 143 FSVILQCLEHETDWEVYSYVLVHLPSQLSNKALFLGADIDQLRNALCSMICDRSFLESLSNKPTGFKRADLQVCVFPVLS 222 (356)
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHhhhhHHhccCcHHHHHHHHHHHHhcccccccccCCCCCCCHHHHHHHHHHHHH
Confidence 333444443 5577766555555544433221111112444444444443332 2345556666777
Q ss_pred HhhhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCchhHHHHH
Q 001442 406 QLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGA 485 (1076)
Q Consensus 406 ~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~aL~~l~~~~~~~~l~~~l~~ll~~l~~~l~~~~~~v~~~a 485 (1076)
.+..+- ..+....-+.++..+..++.+ + ....+..||.-.+-.++.. +.++++.++..+.+...+....+ ..
T Consensus 223 ~LisYh-~~~~k~~qd~iV~~l~~GL~s-~---~a~~CI~aLtic~~EmP~s-~~k~L~~iL~kLs~i~tt~~~Ai--~I 294 (356)
T PF03542_consen 223 ALISYH-SHFSKQEQDEIVRALESGLGS-K---TAKPCIHALTICCYEMPDS-MKKLLPSILLKLSKISTTPNMAI--HI 294 (356)
T ss_pred HHHHHH-HhcCHhHHHHHHHHHHHHhcc-C---cHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHhhccchhhHH--HH
Confidence 766543 223234456788888888876 3 3355667777777777643 67788888888877666554322 35
Q ss_pred HHHHHHHHH
Q 001442 486 LTALASVAD 494 (1076)
Q Consensus 486 l~ai~~l~~ 494 (1076)
++-++.++.
T Consensus 295 LEFLs~L~~ 303 (356)
T PF03542_consen 295 LEFLSSLSR 303 (356)
T ss_pred HHHHHHHhh
Confidence 555555554
No 347
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=52.23 E-value=1.7e+02 Score=27.17 Aligned_cols=80 Identities=15% Similarity=0.294 Sum_probs=46.3
Q ss_pred HHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccc
Q 001442 380 QVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEIL 459 (1076)
Q Consensus 380 ~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~aL~~l~~~~~~~~l 459 (1076)
.+-..+...|.++++.|+..|+.|+-.+-. +.+ .+|- ..|...++| ...|. .|..|.-.-+.+.+
T Consensus 17 ~l~~~~~~LL~~~d~~vQklAL~cll~~k~---~~l-~pY~----d~L~~Lldd---~~frd----eL~~f~~~~~~~~I 81 (141)
T PF07539_consen 17 ELYDALLRLLSSRDPEVQKLALDCLLTWKD---PYL-TPYK----DNLENLLDD---KTFRD----ELTTFNLSDESSVI 81 (141)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc---HHH-HhHH----HHHHHHcCc---chHHH----HHHhhcccCCcCCC
Confidence 455667788899999999999999988542 223 3343 334445555 23333 34444433222223
Q ss_pred c-CchHHHHHHHHHHh
Q 001442 460 T-PYLDGIVSKLLVLL 474 (1076)
Q Consensus 460 ~-~~l~~ll~~l~~~l 474 (1076)
. .+-+.+||.++.+|
T Consensus 82 ~~ehR~~l~pvvlRIL 97 (141)
T PF07539_consen 82 EEEHRPELMPVVLRIL 97 (141)
T ss_pred CHHHHhHHHHHHHHHH
Confidence 3 34456677766655
No 348
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=51.82 E-value=1.5e+02 Score=29.22 Aligned_cols=111 Identities=16% Similarity=0.148 Sum_probs=60.6
Q ss_pred hHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCChh--HHHHHHHHHHHhhhcC
Q 001442 377 NLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPR--VQAHAASAVLNFSENC 454 (1076)
Q Consensus 377 ~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~--v~~~a~~aL~~l~~~~ 454 (1076)
.+.+++..+++..-..-.+||..|..++.++...-.+.+ .+.+ -.+.+...+.. +... .-..+..++..++.-+
T Consensus 4 ~~~~~~~~llrqa~EKiDrvR~~A~~~l~~ll~~~~~~~--~~ip-~~~~L~~i~~~-~~~~~~~w~~~~~~F~~l~~LL 79 (193)
T PF12612_consen 4 LVQQIIGGLLRQAAEKIDRVREVAGKCLQRLLHSQDPTI--PHIP-HREELQDIFPS-ESEASLNWSSSSEYFPRLVKLL 79 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccc--cCCC-cHHHHHHHccc-ccccccccCCHHHHHHHHHHHh
Confidence 344566666666666678999999999999984332211 1222 22333333332 1110 0122233344444333
Q ss_pred CcccccCchHHHHHHHHHHhhcCchhHHHHHHHHHHHHHH
Q 001442 455 TPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVAD 494 (1076)
Q Consensus 455 ~~~~l~~~l~~ll~~l~~~l~~~~~~v~~~al~ai~~l~~ 494 (1076)
. +..|...++..++......+..+.+.+..++-....
T Consensus 80 ~---~~~y~~~ll~Glv~S~G~~tesl~~~s~~AL~~~~~ 116 (193)
T PF12612_consen 80 D---LPEYRYSLLSGLVVSAGGLTESLVRASSAALLSYLR 116 (193)
T ss_pred c---cHHHHHHHHhHHHhcCCCCchhHHHHHHHHHHHHHH
Confidence 3 345677777777777776666666666666655554
No 349
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=51.45 E-value=28 Score=24.29 Aligned_cols=40 Identities=13% Similarity=0.120 Sum_probs=26.9
Q ss_pred HHHHHhcccCCCCcchhHHHHHHhhcCCCHHHHHHHHHHH
Q 001442 128 VSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIF 167 (1076)
Q Consensus 128 i~~ia~~~~~~~~w~~ll~~l~~~~~~~~~~~r~~al~~L 167 (1076)
++.++..+-.--.-+.+...+...+.++++.+|+.++.++
T Consensus 3 l~~iv~~dp~ll~~~~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 3 LSSIVEKDPTLLDSSDVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred HHHHHhcCccccchHHHHHHHHHHhcCCChHHHHHHHHHC
Confidence 4445544322124467888888888899999999887653
No 350
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=50.20 E-value=11 Score=23.11 Aligned_cols=14 Identities=50% Similarity=0.679 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHhhh
Q 001442 396 VRWAAINAIGQLST 409 (1076)
Q Consensus 396 vr~~a~~~l~~l~~ 409 (1076)
||..|.++||++..
T Consensus 1 VR~~Aa~aLg~igd 14 (27)
T PF03130_consen 1 VRRAAARALGQIGD 14 (27)
T ss_dssp HHHHHHHHHGGG-S
T ss_pred CHHHHHHHHHHcCC
Confidence 78999999999864
No 351
>PF10350 DUF2428: Putative death-receptor fusion protein (DUF2428); InterPro: IPR019442 This domain is found in a family of proteins of unknown function that are conserved from plants to humans. Several of these proteins have been annotated as being HEAT repeat-containing proteins while others are designated as death-receptor interacting proteins, but neither of these has yet been confirmed. Aberrations in the genes encoding these proteins have been observed in benign thyroid adenomas [].
Probab=49.74 E-value=3.2e+02 Score=28.42 Aligned_cols=59 Identities=14% Similarity=0.233 Sum_probs=39.6
Q ss_pred HhHHHHHHHHHHHhcCCCcc------hhHHHHHHHHHHHHHHhhcccchhhccchhhHHHHHHHHHHhh
Q 001442 230 RQLVDVVGSMLQIAEAESLE------EGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSML 292 (1076)
Q Consensus 230 ~~l~~l~~~l~~~~~~~~~~------~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l 292 (1076)
+-++..++.++++...+... +..+..|++++..+... ..+-....+|+...+...+..+
T Consensus 185 ~ll~~~~~~Ll~ia~~~~~~~~~~~~d~~qVHAlNiLr~if~d----s~L~~~~~~yi~~~l~lai~~f 249 (255)
T PF10350_consen 185 PLLHRTMKSLLEIAKSPSTQHEDEKSDLPQVHALNILRAIFRD----SKLSEDVSPYIEDALILAIKGF 249 (255)
T ss_pred hHHHHHHHHHHHHhcCCcccccccccchHHHHHHHHHHHHHhc----chhHHHHHHHHHHHHHHHHHhC
Confidence 55666777777776544321 45799999999999883 2233345678887777766655
No 352
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=49.72 E-value=2.7e+02 Score=27.58 Aligned_cols=57 Identities=16% Similarity=0.155 Sum_probs=40.7
Q ss_pred HHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhH
Q 001442 359 ALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDL 415 (1076)
Q Consensus 359 al~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~ 415 (1076)
.+..++.+.+.++..-.+.+..++..+...-.+++...|..+-.++|...+.++|+.
T Consensus 20 vl~v~s~lf~~lg~~~~~~l~~~L~~l~~lr~~~~f~~~~~~e~~lgaAi~amGpe~ 76 (198)
T PF08161_consen 20 VLNVLSALFEKLGERSSPLLKPILKTLGDLRESEDFSFRKELEQVLGAAIRAMGPEQ 76 (198)
T ss_pred HHHHHHHHHHHHhhhccHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHCCHHH
Confidence 344444444444443446677777777777777778899999999999999999854
No 353
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=49.18 E-value=3.2e+02 Score=28.23 Aligned_cols=183 Identities=14% Similarity=0.204 Sum_probs=95.3
Q ss_pred HHHhcCCChHHHHHHHHHHHHhhhcCch---------HHHHHHHH-HHc-----c----CCCHHHHHHHHHHHHHhcccC
Q 001442 28 ISHLMSTSNEQRSEAELLFNLCKQQDPD---------SLTLKLAH-LLQ-----R----SPHPEARAMAAVLLRKLLTRD 88 (1076)
Q Consensus 28 L~~~~s~d~~~r~~Ae~~L~~~~~~~p~---------~~~~~L~~-il~-----~----~~~~~~R~~a~v~Lk~~i~~~ 88 (1076)
+..+. +++.|..|-..|..-+++.|+ +.+..|++ |+. + +....-|-..++.|-+.+..+
T Consensus 3 i~~L~--~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAsh 80 (262)
T PF04078_consen 3 ILDLC--NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASH 80 (262)
T ss_dssp HHHTS--SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-
T ss_pred hHHhc--CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcC
Confidence 34444 456688887777654443332 12233443 332 1 123457888888888888776
Q ss_pred CCCcccCCCHhHHH-HHHHHHH----HHHhh----cchhhHHHHHHHHHHHHHhcccCCC----CcchhHHHHHHhhcCC
Q 001442 89 DSFLWPRLSLHTQS-SLKSMLL----QSIQL----ESAKSISKKLCDTVSELASNILPEN----GWPELLPFMFQCVSSD 155 (1076)
Q Consensus 89 ~~~~w~~l~~~~~~-~lk~~Ll----~~l~~----~~~~~vr~~~~~~i~~ia~~~~~~~----~w~~ll~~l~~~~~~~ 155 (1076)
|++|. .++..+. -.|.. .+-..+|-..-.+||.+++.+-+.- -..|++|..+..+..+
T Consensus 81 ---------petr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~G 151 (262)
T PF04078_consen 81 ---------PETRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFG 151 (262)
T ss_dssp ---------TTTHHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS
T ss_pred ---------hHHHHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhc
Confidence 34444 3333322 22221 1245689999999999998543210 2367888888888888
Q ss_pred CHHHHHHHHHHHHHHHHH--HHHhhCCcchHhHHhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHcc
Q 001442 156 SVKLQESAFLIFAQLIIN--FIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGT 223 (1076)
Q Consensus 156 ~~~~r~~al~~L~~l~~~--~~~~l~~~~~~~~~~~l~p~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~ 223 (1076)
+.-.+..|..++..++.. =++++... .+.|..+...+=+.+.+..+++++...+.+++|...+.++
T Consensus 152 selSKtvAtfIlqKIL~dd~GL~yiC~t--~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdn 219 (262)
T PF04078_consen 152 SELSKTVATFILQKILLDDVGLNYICQT--AERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDN 219 (262)
T ss_dssp -HHHHHHHHHHHHHHHHSHHHHHHHTSS--HHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTS
T ss_pred cHHHHHHHHHHHHHHHcchhHHHHHhcC--HHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccC
Confidence 888888888888777421 01111111 2333322222222222333455555666666666666554
No 354
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=48.65 E-value=88 Score=31.38 Aligned_cols=66 Identities=11% Similarity=0.114 Sum_probs=45.2
Q ss_pred HHHHHHHhhcCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhh
Q 001442 340 ASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDL 411 (1076)
Q Consensus 340 l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~ 411 (1076)
..+.+.++..+++--.|.+|+.+.-...+. ...+.+...+...+.|++..|+.+..|+|..++..-
T Consensus 116 ~~~~l~~W~~s~~~W~rR~ai~~~l~~~~~------~~~~~l~~~~~~~~~d~e~fI~KAiGW~LRe~~k~d 181 (208)
T cd07064 116 FEPVMDEWSTDENFWLRRTAILHQLKYKEK------TDTDLLFEIILANLGSKEFFIRKAIGWALREYSKTN 181 (208)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHHHc------cCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhccC
Confidence 356677788888755555555432222221 234456677788889999999999999999998754
No 355
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=48.51 E-value=2.7e+02 Score=31.77 Aligned_cols=114 Identities=11% Similarity=0.095 Sum_probs=72.8
Q ss_pred HHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhh-hhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCc--
Q 001442 380 QVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFH-PQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTP-- 456 (1076)
Q Consensus 380 ~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~-~~ll~~l~~~l~~~~~~~v~~~a~~aL~~l~~~~~~-- 456 (1076)
.++..+.+.+...+..+|....|.+..+.-.++....-+.+ ..=+..++....| +...|+..+...|.+|.-+...
T Consensus 473 ~iIdvl~~~v~sKDdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~ND-pc~~vq~q~lQilrNftc~~~knE 551 (743)
T COG5369 473 SIIDVLVNLVMSKDDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTND-PCFKVQHQVLQILRNFTCDTSKNE 551 (743)
T ss_pred hHHHHHHHHhhcchhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcC-cccccHHHHHHHHHhccccccccc
Confidence 46677777776677789999999999888776654322232 3345667888889 9999999999999999753321
Q ss_pred ---ccccCc--hHHHHHHHHHHhhcCchhHHHHHHHHHHHHHH
Q 001442 457 ---EILTPY--LDGIVSKLLVLLQNGKQMVQEGALTALASVAD 494 (1076)
Q Consensus 457 ---~~l~~~--l~~ll~~l~~~l~~~~~~v~~~al~ai~~l~~ 494 (1076)
+.+-.. ..-+...+...+...++..-...+..+-.++.
T Consensus 552 kskdv~~K~~p~~ylfk~l~~k~e~~np~~i~~~~yilv~~aa 594 (743)
T COG5369 552 KSKDVFIKATPRRYLFKRLIDKYEENNPMEILEGCYILVRNAA 594 (743)
T ss_pred ccceeEEecChHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHh
Confidence 111111 12356666666666665444444444444443
No 356
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=48.11 E-value=3.7e+02 Score=28.70 Aligned_cols=285 Identities=14% Similarity=0.152 Sum_probs=135.2
Q ss_pred HhCCCHHHHHHHHHHHHHHHccCcHHHHHhHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHhhcccchhhccchhhH
Q 001442 202 LNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFI 281 (1076)
Q Consensus 202 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~ 281 (1076)
..+++..+...+++.+..+....|+++.-.-..++-.++. .+..++++-...+.++..-+-.. .+.+ ..|+
T Consensus 116 a~~~~~~~l~ksL~al~~lt~~qpdl~da~g~~vvv~lL~---~~~~~~dlt~~~~~~v~~Ac~~h----E~nr--Q~~m 186 (461)
T KOG4199|consen 116 AESPNESVLKKSLEAINSLTHKQPDLFDAEAMAVVLKLLA---LKVESEEVTLLTLQWLQKACIMH----EVNR--QLFM 186 (461)
T ss_pred hhCCchhHHHHHHHHHHHhhcCCcchhccccHHHHHHHHh---cccchHHHHHHHHHHHHHHHHHh----HHHH--HHHH
Confidence 4678889999999999999999999987665555544443 23345666666665555443310 1111 1222
Q ss_pred H-HHHHHHHHhhcCCCCCc-----cccCC--CCCCcccCCCC-chhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhcCCC
Q 001442 282 N-RLFAILMSMLLDIEDDP-----LWHSA--ETEDEDAGESS-NYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPE 352 (1076)
Q Consensus 282 ~-~l~~~l~~~l~~~~dd~-----~~~~~--~~e~~d~~e~~-~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~ 352 (1076)
+ .+.+.+.+.+.....+. -|.-. -.+| +.. ++..+..--..++. .-++-.+.+.++..+.
T Consensus 187 ~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dD----DiRV~fg~ah~hAr~ia~----e~~l~~L~Eal~A~~d--- 255 (461)
T KOG4199|consen 187 ELKILELILQVLNREGKTRTVRELYDAIRALLTDD----DIRVVFGQAHGHARTIAK----EGILTALTEALQAGID--- 255 (461)
T ss_pred HhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCC----ceeeecchhhHHHHHHHH----hhhHHHHHHHHHccCC---
Confidence 2 34444444433211110 00000 0000 000 11111111111221 1122233333333332
Q ss_pred hhHHHHHHHHHHHHHh---hcHHHHHHhHHHHHHHHHhhCCCCC-hhHHHH---HHHHHHHhhhhh--chhHHh-hhhhh
Q 001442 353 WQKHHAALIALAQIAE---GCAKVMVKNLEQVLSMVLNSFRDPH-PRVRWA---AINAIGQLSTDL--GPDLQN-QFHPQ 422 (1076)
Q Consensus 353 ~~~r~aal~~l~~l~~---~~~~~~~~~l~~i~~~l~~~l~d~~-~~vr~~---a~~~l~~l~~~~--~~~~~~-~~~~~ 422 (1076)
+..--..+.+|+.++- -|...... .=+..++..+.|.+ ..+|.. ++..|..++..- ...+.. .-.+.
T Consensus 256 p~~L~~l~~tl~~lAVr~E~C~~I~e~---GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ 332 (461)
T KOG4199|consen 256 PDSLVSLSTTLKALAVRDEICKSIAES---GGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDK 332 (461)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHc---cCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHH
Confidence 3334445555555543 22221100 11445566666633 345544 445555554321 111111 12333
Q ss_pred hHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchH-HHHHHHHHHhhcCc--hhHHHHHHHHHHHHHHHhHhh
Q 001442 423 VLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLD-GIVSKLLVLLQNGK--QMVQEGALTALASVADSSQEH 499 (1076)
Q Consensus 423 ll~~l~~~l~~~~~~~v~~~a~~aL~~l~~~~~~~~l~~~l~-~ll~~l~~~l~~~~--~~v~~~al~ai~~l~~~~~~~ 499 (1076)
++....+... +|.|...++.++..++=..++.. ..+++ ..-...++.++..+ ..++++++..|..++......
T Consensus 333 ii~l~~~h~~---~p~Vi~~~~a~i~~l~LR~pdhs-a~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~ 408 (461)
T KOG4199|consen 333 IITLALRHSD---DPLVIQEVMAIISILCLRSPDHS-AKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAEN 408 (461)
T ss_pred HHHHHHHcCC---ChHHHHHHHHHHHHHHhcCcchH-HHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhc
Confidence 4444444443 58899999999998886554321 11111 22233444554432 468999999999999877665
Q ss_pred HHhhHhhhHHHHHH
Q 001442 500 FQKYYDAVMPFLKA 513 (1076)
Q Consensus 500 ~~~~~~~i~~~L~~ 513 (1076)
-.+++..=+..|..
T Consensus 409 ~~~~l~~GiE~Li~ 422 (461)
T KOG4199|consen 409 RTILLANGIEKLIR 422 (461)
T ss_pred cchHHhccHHHHHH
Confidence 55665544444443
No 357
>cd00864 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain); PIK domain is conserved in PI3 and PI4-kinases. Its role is unclear, but it has been suggested to be involved in substrate presentation. Phosphoinositide 3-kinases play an important role in a variety of fundamental cellular processes and can be divided into three main classes, defined by their substrate specificity and domain architecture.
Probab=47.83 E-value=2.2e+02 Score=26.78 Aligned_cols=81 Identities=21% Similarity=0.218 Sum_probs=54.4
Q ss_pred ChHHHHHHHHHhcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHcc-CCCHHHHHHHHHHHHHhcccCCCCcccCCCH
Q 001442 20 DSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQR-SPHPEARAMAAVLLRKLLTRDDSFLWPRLSL 98 (1076)
Q Consensus 20 ~~~~l~~lL~~~~s~d~~~r~~Ae~~L~~~~~~~p~~~~~~L~~il~~-~~~~~~R~~a~v~Lk~~i~~~~~~~w~~l~~ 98 (1076)
++..+..+|..+.-.|.+.++++.+.|..+..-+| ...+++|.. -.++.+|++|.-.|++ +++
T Consensus 37 ~p~~lp~~L~sv~w~~~~~~~e~~~lL~~W~~~~~----~~aL~LL~~~~~~~~vr~yAv~~L~~------------~~~ 100 (152)
T cd00864 37 VPKALPKLLKSVNWNDDEEVSELYQLLKWWAPLSP----EDALELLSPKYPDPVVRQYAVRVLES------------ASD 100 (152)
T ss_pred ChHHHHHHHHHccCCCHHHHHHHHHHHhcCCCCCH----HHHHHHcCCcCCCHHHHHHHHHHHHh------------CCH
Confidence 44667777777776778888888888877655333 334555554 4568899999877764 245
Q ss_pred hHHHHHHHHHHHHHhhcc
Q 001442 99 HTQSSLKSMLLQSIQLES 116 (1076)
Q Consensus 99 ~~~~~lk~~Ll~~l~~~~ 116 (1076)
+.-.....+|.|+|..|+
T Consensus 101 ~~l~~ylpQLVQaLkye~ 118 (152)
T cd00864 101 DELLLYLPQLVQALKYEP 118 (152)
T ss_pred HHHHHHHHHHHHHHhccc
Confidence 566666677777776654
No 358
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA processing and transcription termination. Nrd1 is implicated in polyadenylation-independent 3'-RNA processing. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II. During transcription, Pol II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr 1-Ser 2-Pro 3-Thr 4-Ser 5-Pro 6-Ser 7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Probab=46.53 E-value=1.3e+02 Score=26.54 Aligned_cols=83 Identities=8% Similarity=0.077 Sum_probs=49.6
Q ss_pred CChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHH
Q 001442 392 PHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLL 471 (1076)
Q Consensus 392 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~aL~~l~~~~~~~~l~~~l~~ll~~l~ 471 (1076)
+.+.+...+.||+... .+...++..+.+.+.. ..+.-+..+++.+..++.+++...-..+...+.+.+.
T Consensus 17 S~~~I~~lt~~a~~~~----------~~a~~iv~~i~~~i~~-~~~~~KL~~LYL~dsIvkn~~~~~~~~~~~~~~~~f~ 85 (114)
T cd03562 17 SQPSIQTLTKLAIENR----------KHAKEIVEIIEKHIKK-CPPEQKLPLLYLLDSIVKNVGRKYKEFFSEFLVPLFL 85 (114)
T ss_pred cHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHHHcccchHHHHHHHHHHHHH
Confidence 4455555555554442 4556777777777777 5667788999999999998865422112222244444
Q ss_pred HHhhcCchhHHHHH
Q 001442 472 VLLQNGKQMVQEGA 485 (1076)
Q Consensus 472 ~~l~~~~~~v~~~a 485 (1076)
......++.+|...
T Consensus 86 ~~~~~~~~~~r~kl 99 (114)
T cd03562 86 DAYEKVDEKTRKKL 99 (114)
T ss_pred HHHHhCCHHHHHHH
Confidence 44445555555433
No 359
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.42 E-value=6.1e+02 Score=30.67 Aligned_cols=238 Identities=18% Similarity=0.145 Sum_probs=137.5
Q ss_pred HHHHHHHHhcC-CChHHHHHHHHHHHHhhhcCchHH----HHHHHHHHcc-CCCHHHHHHHHHHHHHhcccCCCC-c--c
Q 001442 23 PFETLISHLMS-TSNEQRSEAELLFNLCKQQDPDSL----TLKLAHLLQR-SPHPEARAMAAVLLRKLLTRDDSF-L--W 93 (1076)
Q Consensus 23 ~l~~lL~~~~s-~d~~~r~~Ae~~L~~~~~~~p~~~----~~~L~~il~~-~~~~~~R~~a~v~Lk~~i~~~~~~-~--w 93 (1076)
.+..+...+.+ +=-+.|+.|-..|+.+.+++-..+ ...|++.|.. ..++++-..+.-.+-..+...+.. . -
T Consensus 23 TI~kLcDRvessTL~eDRR~A~rgLKa~srkYR~~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v~dd 102 (970)
T KOG0946|consen 23 TIEKLCDRVESSTLLEDRRDAVRGLKAFSRKYREEVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEVMDD 102 (970)
T ss_pred HHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhhccc
Confidence 45555555543 446789999999999877543322 2567777765 677888888888887777765200 0 0
Q ss_pred cCCCHhHHHHHH----------HHHHHHHhhcchhhHHHHHHHHHHHHHhcccCC-----CCcchhHHHHHHhhcCCCHH
Q 001442 94 PRLSLHTQSSLK----------SMLLQSIQLESAKSISKKLCDTVSELASNILPE-----NGWPELLPFMFQCVSSDSVK 158 (1076)
Q Consensus 94 ~~l~~~~~~~lk----------~~Ll~~l~~~~~~~vr~~~~~~i~~ia~~~~~~-----~~w~~ll~~l~~~~~~~~~~ 158 (1076)
++-+++.-..+- ..|++.+. +.+-.||....+.++.+.+...+. -..|.=+..++..+.+...-
T Consensus 103 s~qsdd~g~~iae~fik~qd~I~lll~~~e-~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~ 181 (970)
T KOG0946|consen 103 STQSDDLGLWIAEQFIKNQDNITLLLQSLE-EFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREP 181 (970)
T ss_pred chhhhHHHHHHHHHHHcCchhHHHHHHHHH-hhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhh
Confidence 111222222222 23444554 568899999999999998865432 13566678889999998899
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCcchHhHHhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccCc---HHHH--HhHH
Q 001442 159 LQESAFLIFAQLIINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEP---RFLR--RQLV 233 (1076)
Q Consensus 159 ~r~~al~~L~~l~~~~~~~l~~~~~~~~~~~l~p~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~---~~~~--~~l~ 233 (1076)
+|..++..|..+... -..-.....|.+.+..++..+..--.....=+...|+..+..+..++. .+|+ .|++
T Consensus 182 IRNe~iLlL~eL~k~----n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~ 257 (970)
T KOG0946|consen 182 IRNEAILLLSELVKD----NSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIP 257 (970)
T ss_pred hchhHHHHHHHHHcc----CchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHH
Confidence 999999888666211 100011234455444555544321111122467888888888887653 3443 3555
Q ss_pred HHHHHHHHHhcCCC---cchhHHHHHHHHHHHHHH
Q 001442 234 DVVGSMLQIAEAES---LEEGTRHLAIEFVITLAE 265 (1076)
Q Consensus 234 ~l~~~l~~~~~~~~---~~~~~r~~al~~l~~l~~ 265 (1076)
.+...+-...-..+ ....-|...+.+...+++
T Consensus 258 rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr 292 (970)
T KOG0946|consen 258 RLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVR 292 (970)
T ss_pred HHHhhcCcccccCcccccccHHHHHHHHHHHHHHH
Confidence 55433222211111 122346655555555544
No 360
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA processing and transcription termination. Nrd1 is implicated in polyadenylation-independent 3'-RNA processing. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II. During transcription, Pol II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr 1-Ser 2-Pro 3-Thr 4-Ser 5-Pro 6-Ser 7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Probab=45.31 E-value=1.4e+02 Score=26.36 Aligned_cols=65 Identities=11% Similarity=0.281 Sum_probs=42.2
Q ss_pred HHHhHhhhhcCCCCHHHHHHHHHHHHHHHHHhhhhhHhhHHhH-HHHHHhhccCCChhHHhhhhHHH
Q 001442 844 LSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREAALKYYETY-LPFLLEACNDENQDVRQAAVYGL 909 (1076)
Q Consensus 844 l~~~l~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l-l~~l~~~l~~~~~~vr~~a~~~l 909 (1076)
+...+.+.++ ..++..+-.++.++.+++++++.....++... .+.+....+..++.+|......+
T Consensus 38 iv~~i~~~i~-~~~~~~KL~~LYL~dsIvkn~~~~~~~~~~~~~~~~f~~~~~~~~~~~r~kl~rl~ 103 (114)
T cd03562 38 IVEIIEKHIK-KCPPEQKLPLLYLLDSIVKNVGRKYKEFFSEFLVPLFLDAYEKVDEKTRKKLERLL 103 (114)
T ss_pred HHHHHHHHHH-hCCcccchHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 4444444443 34556788899999999999988766655555 55565656666667765443333
No 361
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=44.96 E-value=29 Score=21.78 Aligned_cols=15 Identities=33% Similarity=0.299 Sum_probs=13.0
Q ss_pred hhHHHHHHHHHHHHH
Q 001442 353 WQKHHAALIALAQIA 367 (1076)
Q Consensus 353 ~~~r~aal~~l~~l~ 367 (1076)
|.+|+.+..+||.+.
T Consensus 1 ~~vR~~aa~aLg~~~ 15 (30)
T smart00567 1 PLVRHEAAFALGQLG 15 (30)
T ss_pred CHHHHHHHHHHHHcC
Confidence 678999999999873
No 362
>cd00870 PI3Ka_III Phosphoinositide 3-kinase (PI3K) class III, accessory domain (PIK domain); PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3Ks class III phosphorylate phosphoinositol (PtdIns) only. The prototypical PI3K class III, yeast Vps34, is involved in trafficking proteins from Golgi to the vacuole.
Probab=44.18 E-value=2.6e+02 Score=26.83 Aligned_cols=81 Identities=16% Similarity=0.130 Sum_probs=50.2
Q ss_pred ChHHHHHHHHHhcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHcc-CCCHHHHHHHHHHHHHhcccCCCCcccCCCH
Q 001442 20 DSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQR-SPHPEARAMAAVLLRKLLTRDDSFLWPRLSL 98 (1076)
Q Consensus 20 ~~~~l~~lL~~~~s~d~~~r~~Ae~~L~~~~~~~p~~~~~~L~~il~~-~~~~~~R~~a~v~Lk~~i~~~~~~~w~~l~~ 98 (1076)
++..+..+|..+-=.|.+..+++.+.|..+..-+| ...+++|.. =.++.||++|.-.|++ +++
T Consensus 44 ~p~aL~~~L~sv~W~~~~e~~e~~~lL~~W~~i~~----~~aLeLL~~~f~~~~VR~yAV~~L~~------------~sd 107 (166)
T cd00870 44 NKKALTKFLKSVNWSDEQEVKQALELMPKWAKIDI----EDALELLSPYFTNPVVRKYAVSRLKL------------ASD 107 (166)
T ss_pred CcHHHHHHhhhCCCCCHHHHHHHHHHHhcCCCCCH----HHHHHHcCccCCCHHHHHHHHHHHHh------------CCH
Confidence 34555556655533466667778777777765333 334555554 3567888888877764 245
Q ss_pred hHHHHHHHHHHHHHhhcc
Q 001442 99 HTQSSLKSMLLQSIQLES 116 (1076)
Q Consensus 99 ~~~~~lk~~Ll~~l~~~~ 116 (1076)
+.......+|.++|..|.
T Consensus 108 ~eL~~yL~QLVQaLKyE~ 125 (166)
T cd00870 108 EELLLYLLQLVQALKYEN 125 (166)
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 555666667777777654
No 363
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=43.62 E-value=7.2e+02 Score=30.73 Aligned_cols=67 Identities=16% Similarity=0.050 Sum_probs=42.9
Q ss_pred HHHHHHHHHHhhc----chhhHHHHHHHHHHHHHhcccCCCCcchhHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 001442 103 SLKSMLLQSIQLE----SAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQL 170 (1076)
Q Consensus 103 ~lk~~Ll~~l~~~----~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~~~~~~~r~~al~~L~~l 170 (1076)
.+.-.+.+.|.+. .++.+|...-.++..+-..... .-+.+++|.+..++-++++..|.-|...+..+
T Consensus 77 ~~~~aiyE~L~~p~lLr~~~~l~~~F~~~f~~~~~~~~~-~~~~~~lPG~~~~Lf~~~~~~r~WA~~~~~~l 147 (727)
T PF12726_consen 77 ALLLAIYECLCNPALLRDDEELRELFDAIFSSLQSKKPL-KLPKELLPGMTYFLFDGNPERRRWAERWWQRL 147 (727)
T ss_pred hHHHHHHHHHhCHHHHcCcHHHHHHHHHHHHHHhccCCc-cccccccchhhhhhhcCCHHHHHHHHHHHHHc
Confidence 3445556665432 2445777766666666543221 22377888888888888888888888777765
No 364
>PF12243 CTK3: CTD kinase subunit gamma CTK3
Probab=42.86 E-value=1e+02 Score=28.40 Aligned_cols=74 Identities=11% Similarity=0.174 Sum_probs=50.6
Q ss_pred HHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCccc--ccC
Q 001442 384 MVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEI--LTP 461 (1076)
Q Consensus 384 ~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~aL~~l~~~~~~~~--l~~ 461 (1076)
.+++.|+-+...++.+|..+|.. . ...+.+.+.+++.+++ ++-..|...++.+..+++.+.... -.+
T Consensus 12 ~~L~~L~aS~qSi~kaa~fAlk~--~--------~~~edL~~cIle~le~-~~lN~R~nI~~fID~l~e~~~~~~~~~~~ 80 (139)
T PF12243_consen 12 QLLRRLNASQQSIQKAAQFALKN--R--------DMEEDLWSCILEQLEK-ENLNTRINIFYFIDSLCESSQKSKKYNYP 80 (139)
T ss_pred HHHHHcchhHHHHHHHHHHHHHc--c--------ccHHHHHHHHHHHHhc-cchhhHHHHHHHHHHHHHHHHhcccccch
Confidence 44556666667777777777655 1 2345677778888888 778889999999999998764332 345
Q ss_pred chHHHHH
Q 001442 462 YLDGIVS 468 (1076)
Q Consensus 462 ~l~~ll~ 468 (1076)
|...+-.
T Consensus 81 Yv~~l~~ 87 (139)
T PF12243_consen 81 YVSMLQR 87 (139)
T ss_pred hHHHHHH
Confidence 6554433
No 365
>KOG2256 consensus Predicted protein involved in nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis]
Probab=42.51 E-value=6.4e+02 Score=29.78 Aligned_cols=179 Identities=9% Similarity=0.115 Sum_probs=88.4
Q ss_pred HHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhcc--CCCChhHHHHHHHHHHHhhhcCC
Q 001442 378 LEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMD--DFQNPRVQAHAASAVLNFSENCT 455 (1076)
Q Consensus 378 l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~--~~~~~~v~~~a~~aL~~l~~~~~ 455 (1076)
+..++..++..=......+|..|+.++..++....+......+....-..+.... .........---.++..++.. +
T Consensus 280 lk~liK~~V~vWstge~~~rv~Afl~l~~l~~~~~~~~l~~vlk~mY~afv~nsk~~~~~tl~~i~Fl~~slvEL~~l-d 358 (661)
T KOG2256|consen 280 LKKLIKAVVHVWSTGEESLRVLAFLCLIDLCRKFKSTCLDPVLKTMYLAFVRNSKFVTVNTLPLINFLQNSLVELLGL-D 358 (661)
T ss_pred HHHHHHHHheeeccCCcchhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCCCCCCcccchhHHHHHHHHHHhcc-C
Confidence 3444444443334457789999999999988877654433333333222222211 100111111111222222211 1
Q ss_pred cc----cccCchHHHHHHHHHHhhcCchhHHHHH-----HHHH----HHHHHHh--HhhHHhhHhhhHHHHHHHHhccCC
Q 001442 456 PE----ILTPYLDGIVSKLLVLLQNGKQMVQEGA-----LTAL----ASVADSS--QEHFQKYYDAVMPFLKAILVNATD 520 (1076)
Q Consensus 456 ~~----~l~~~l~~ll~~l~~~l~~~~~~v~~~a-----l~ai----~~l~~~~--~~~~~~~~~~i~~~L~~~l~~~~~ 520 (1076)
.+ .---|+.++--.|-..+...+.+-...+ +.|+ ..++... ...+.|....+++.+..++.-..+
T Consensus 359 ~~~~Yq~aF~yIrQLAihLRnam~~k~K~s~~~VYnWqfi~cL~lW~rvisf~~~~~s~lq~LvYpLvQvi~GvirLipT 438 (661)
T KOG2256|consen 359 LQVSYQHAFVYIRQLAIHLRNAMITKNKESVQSVYNWQYVHCLDLWLRVISFANGSASQLQPLVYPLVQVILGVIRLIPT 438 (661)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccHhhhhhhhhHHHHHHHHHhhhcCc
Confidence 00 0012455555556666655543322211 1222 1122111 123444444555555555555566
Q ss_pred chhhhhHHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHH
Q 001442 521 KSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMS 559 (1076)
Q Consensus 521 ~~~~~lr~~a~~~l~~i~~~~g~~~~~~~~~~ii~~l~~ 559 (1076)
+....+|-.++..+-.++++.| .|.|.++-+++.+-.
T Consensus 439 ~qy~PLRlhcir~Li~Ls~ssg--~fIPi~~ll~Eml~~ 475 (661)
T KOG2256|consen 439 PQYYPLRLHCIRSLISLSRSSG--TFIPLSPLLVEMLKS 475 (661)
T ss_pred ccchhHHHHHHHHHHHHHhhcC--ceeecHHHHHHHHHH
Confidence 7788899988888888888887 588877766666554
No 366
>PF03542 Tuberin: Tuberin; InterPro: IPR018515 Initiation of eukaryotic mRNA transcription requires melting of promoter DNA with the help of the general transcription factors TFIIE and TFIIH. In higher eukaryotes, the general transcription factor TFIIE consists of two subunits: the large alpha subunit (IPR002853 from INTERPRO) and the small beta (IPR003166 from INTERPRO). TFIIE beta has been found to bind to the region where the promoter starts to open to be single-stranded upon transcription initiation by RNA polymerase II. The approximately 120-residue central core domain of TFIIE beta plays a role in double-stranded DNA binding of TFIIE []. The TFIIE beta central core DNA-binding domain consists of three helices with a beta hairpin at the C terminus, resembling the winged helix proteins. It shows a novel double-stranded DNA-binding activity where the DNA-binding surface locates on the opposite side to the previously reported winged helix motif by forming a positively charged furrow []. This domain is found in Tuberin proteins. ; GO: 0005096 GTPase activator activity, 0043547 positive regulation of GTPase activity
Probab=42.49 E-value=5e+02 Score=28.54 Aligned_cols=77 Identities=10% Similarity=0.133 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHhhHHhHHHHHHhhccCCChhHHhhhhHHHHHHHhhcCCCchHHHHHHHHHHHHhhcCC
Q 001442 859 EERRIAICIFDDVAEQCREAALKYYETYLPFLLEACNDENQDVRQAAVYGLGVCAEFGGSVVKPLVGEALSRLNVVIRHP 938 (1076)
Q Consensus 859 ~~r~~al~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~vr~~a~~~lg~l~~~~~~~~~~~~~~il~~L~~~l~~~ 938 (1076)
+.....+.+|..++.+....-..--+.++..+..++.++. .+-++.++..++.-.++.+..+++.++..|.++...+
T Consensus 212 D~~~~~~~~Ls~LisYh~~~~k~~qd~iV~~l~~GL~s~~---a~~CI~aLtic~~EmP~s~~k~L~~iL~kLs~i~tt~ 288 (356)
T PF03542_consen 212 DLQVCVFPVLSALISYHSHFSKQEQDEIVRALESGLGSKT---AKPCIHALTICCYEMPDSMKKLLPSILLKLSKISTTP 288 (356)
T ss_pred HHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHhccCc---HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccch
Confidence 3444555666666666443222344677778887776633 2345677888888888888888999999988776543
No 367
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=41.93 E-value=1.4e+02 Score=29.53 Aligned_cols=66 Identities=18% Similarity=0.189 Sum_probs=47.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhhhhhHhhHHhHHHHHHhhccCCChhHHhhhhHHHHHHHhhcCCCchHHH
Q 001442 854 KDKTAEERRIAICIFDDVAEQCREAALKYYETYLPFLLEACNDENQDVRQAAVYGLGVCAEFGGSVVKPLV 924 (1076)
Q Consensus 854 ~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~vr~~a~~~lg~l~~~~~~~~~~~~ 924 (1076)
.+.+.-.|..++.++...+.. ..+.+.++..+-..+.|++..|+.+..++|..+....++.+.+++
T Consensus 115 ~s~~~~~rR~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~~~~~v~~~l 180 (197)
T cd06561 115 KSENEWVRRAAIVLLLRLIKK-----ETDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKKDPERVIAFL 180 (197)
T ss_pred hCCcHHHHHHHHHHHHHHHHh-----cccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCHHHHHHHH
Confidence 455555666665555444433 246778888888888889999999999999999998655444443
No 368
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.82 E-value=3.5e+02 Score=30.89 Aligned_cols=87 Identities=9% Similarity=0.156 Sum_probs=66.9
Q ss_pred HHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhh-hhhhhHHHHHhhccCC-CChhHHHHHHHHHHHhhhcCCcc
Q 001442 380 QVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQ-FHPQVLPALAGAMDDF-QNPRVQAHAASAVLNFSENCTPE 457 (1076)
Q Consensus 380 ~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~-~~~~ll~~l~~~l~~~-~~~~v~~~a~~aL~~l~~~~~~~ 457 (1076)
..+..|.+.+++.++.|..-|+..|..+++.++..|... .-..+++..+...... ....||..++..|...-+.++..
T Consensus 38 eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~emVk~~k~~~~~~~Vr~kiL~LI~~W~~af~~~ 117 (470)
T KOG1087|consen 38 EAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNEMVKRPKNKPRDLKVREKILELIDTWQQAFCGP 117 (470)
T ss_pred HHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccccCCcchhHHHHHHHHHHHHHHHccCC
Confidence 677888999999999999999999999999998876322 2346777777777774 46689999999999998887642
Q ss_pred cccCchHHHHH
Q 001442 458 ILTPYLDGIVS 468 (1076)
Q Consensus 458 ~l~~~l~~ll~ 468 (1076)
..|++++..
T Consensus 118 --~~~~~~~~~ 126 (470)
T KOG1087|consen 118 --DGYLPDYYQ 126 (470)
T ss_pred --CCcchhHHH
Confidence 356655444
No 369
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=41.19 E-value=1.8e+02 Score=27.47 Aligned_cols=98 Identities=11% Similarity=0.121 Sum_probs=57.6
Q ss_pred HHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCC-ChhHHHHHHHHHHHhhhcCCcc--cccCchHHHHHHHHHHh
Q 001442 398 WAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQ-NPRVQAHAASAVLNFSENCTPE--ILTPYLDGIVSKLLVLL 474 (1076)
Q Consensus 398 ~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~-~~~v~~~a~~aL~~l~~~~~~~--~l~~~l~~ll~~l~~~l 474 (1076)
.-++.++..+.++---.+ +...+.++..+...+.... +..+...|...|.+++.+.+.- .+.. +--++.|...+
T Consensus 35 a~~L~af~eLMeHg~vsW-d~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaILEs~Vl~S~~ly~~V~~--evt~~~Li~hL 111 (160)
T PF11841_consen 35 AYALTAFVELMEHGIVSW-DTLSDSFIKKIASYVNSSAMDASILQRSLAILESIVLNSPKLYQLVEQ--EVTLESLIRHL 111 (160)
T ss_pred HHHHHHHHHHHhcCcCch-hhccHHHHHHHHHHHccccccchHHHHHHHHHHHHHhCCHHHHHHHhc--cCCHHHHHHHH
Confidence 334445555554321122 2223334444444444322 5778889999999998764321 1111 11267788888
Q ss_pred hcCchhHHHHHHHHHHHHHHHhHh
Q 001442 475 QNGKQMVQEGALTALASVADSSQE 498 (1076)
Q Consensus 475 ~~~~~~v~~~al~ai~~l~~~~~~ 498 (1076)
+.++..++..++..|.++...+++
T Consensus 112 q~~~~~iq~naiaLinAL~~kA~~ 135 (160)
T PF11841_consen 112 QVSNQEIQTNAIALINALFLKADD 135 (160)
T ss_pred HcCCHHHHHHHHHHHHHHHhcCCh
Confidence 889999999999888887766554
No 370
>PF10350 DUF2428: Putative death-receptor fusion protein (DUF2428); InterPro: IPR019442 This domain is found in a family of proteins of unknown function that are conserved from plants to humans. Several of these proteins have been annotated as being HEAT repeat-containing proteins while others are designated as death-receptor interacting proteins, but neither of these has yet been confirmed. Aberrations in the genes encoding these proteins have been observed in benign thyroid adenomas [].
Probab=40.72 E-value=4.4e+02 Score=27.41 Aligned_cols=121 Identities=12% Similarity=0.049 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHHHHHhh----hchhhhHHHHHHhHhhhhcCC-C---CHHHHHHHH-HHHHHHHHHhhhhhHhhHHhHH
Q 001442 817 EVFDQVGEILGTLIKTFK----AAFLPFFDELSSYLTPMWGKD-K---TAEERRIAI-CIFDDVAEQCREAALKYYETYL 887 (1076)
Q Consensus 817 ~~~~~~~~~l~~l~~~~~----~~~~~~~~~l~~~l~~~l~~~-~---~~~~r~~al-~~l~~l~~~~~~~~~~~~~~ll 887 (1076)
..++.+...+..+++.+- +.+...-..-+..++..++.. . +..-|+.++ .++..++..-+....+.++..+
T Consensus 112 GAfe~~~~~f~~lc~~l~~~~~~~l~~LP~~WL~~~l~~i~~~~~~~~~iTRRSAGLP~~i~aiL~ae~~~~~~ll~~~~ 191 (255)
T PF10350_consen 112 GAFESVYPGFTALCRRLWSSNNPELSELPEEWLDELLEAIESKGQQKLSITRRSAGLPFLILAILSAEPSNSRPLLHRTM 191 (255)
T ss_pred cHHHHHHHHHHHHHHHHhcCCCchHHHhHHHHHHHHHHHHhcccccccccccccCcHHHHHHHHHhcCCCcchhHHHHHH
Confidence 344556666666666554 222211122233333333222 1 123344444 2344444443333236777788
Q ss_pred HHHHhhccCCCh--------hHHhhhhHHHHHHHhhcC--CCchHHHHHHHHHHHHhhcC
Q 001442 888 PFLLEACNDENQ--------DVRQAAVYGLGVCAEFGG--SVVKPLVGEALSRLNVVIRH 937 (1076)
Q Consensus 888 ~~l~~~l~~~~~--------~vr~~a~~~lg~l~~~~~--~~~~~~~~~il~~L~~~l~~ 937 (1076)
..+++..+.+.. .-+-+|.-+|..+..... +.+.+|+.+.+..-.+.+..
T Consensus 192 ~~Ll~ia~~~~~~~~~~~~d~~qVHAlNiLr~if~ds~L~~~~~~yi~~~l~lai~~f~s 251 (255)
T PF10350_consen 192 KSLLEIAKSPSTQHEDEKSDLPQVHALNILRAIFRDSKLSEDVSPYIEDALILAIKGFSS 251 (255)
T ss_pred HHHHHHhcCCcccccccccchHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCC
Confidence 888877765432 356666667777766543 56777887777766665544
No 371
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=39.51 E-value=3.9e+02 Score=26.39 Aligned_cols=153 Identities=14% Similarity=0.088 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhcccCC-CCcchhHHHHHHhhcCCCHH--HHHHHHHHHHHHHHHHHH
Q 001442 100 TQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPE-NGWPELLPFMFQCVSSDSVK--LQESAFLIFAQLIINFIQ 176 (1076)
Q Consensus 100 ~~~~lk~~Ll~~l~~~~~~~vr~~~~~~i~~ia~~~~~~-~~w~~ll~~l~~~~~~~~~~--~r~~al~~L~~l~~~~~~ 176 (1076)
....+-..+++... |.--.||..++.++..+.....+. ..-| -.+.|...+..+... ....+-.++..+ +.
T Consensus 4 ~~~~~~~~llrqa~-EKiDrvR~~A~~~l~~ll~~~~~~~~~ip-~~~~L~~i~~~~~~~~~~w~~~~~~F~~l----~~ 77 (193)
T PF12612_consen 4 LVQQIIGGLLRQAA-EKIDRVREVAGKCLQRLLHSQDPTIPHIP-HREELQDIFPSESEASLNWSSSSEYFPRL----VK 77 (193)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCCCccccCCC-cHHHHHHHcccccccccccCCHHHHHHHH----HH
Confidence 33444455555444 567789999999999998544331 1122 334555544433221 011111222111 11
Q ss_pred hhCCcchHhHHhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccCcHHHHHhHHHHHHHHHHHhcCCCcchhHHHHH
Q 001442 177 CLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLA 256 (1076)
Q Consensus 177 ~l~~~~~~~~~~~l~p~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~r~~a 256 (1076)
-+. +..+...++..+...+....+.....+...|...+... ..-...+..++..++.++.+...++.+-.-.
T Consensus 78 LL~-------~~~y~~~ll~Glv~S~G~~tesl~~~s~~AL~~~~~~~-~~~~~~~~~v~~~l~~il~~~~~~dRv~vP~ 149 (193)
T PF12612_consen 78 LLD-------LPEYRYSLLSGLVVSAGGLTESLVRASSAALLSYLREL-SDSPEELEQVLSDLLSILKENLRNDRVVVPL 149 (193)
T ss_pred Hhc-------cHHHHHHHHhHHHhcCCCCchhHHHHHHHHHHHHHHHh-hcCHHHHHHHHHHHHHHHHHhCCCCCeeecH
Confidence 111 12334456666665566677788888877777776422 1112234556666666665544556666666
Q ss_pred HHHHHHHHHh
Q 001442 257 IEFVITLAEA 266 (1076)
Q Consensus 257 l~~l~~l~~~ 266 (1076)
++++..+.+.
T Consensus 150 l~tl~~Ll~~ 159 (193)
T PF12612_consen 150 LKTLDFLLSS 159 (193)
T ss_pred HHHHHHHHhC
Confidence 7777776663
No 372
>PF14868 DUF4487: Domain of unknown function (DUF4487)
Probab=38.67 E-value=7.2e+02 Score=29.29 Aligned_cols=284 Identities=15% Similarity=0.201 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHccCCCHHHHHHHHHHHHHhcccCC------CCccc----CCCHhHHHHHHHHHHHHHhhcchhhHHH-H
Q 001442 55 DSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDD------SFLWP----RLSLHTQSSLKSMLLQSIQLESAKSISK-K 123 (1076)
Q Consensus 55 ~~~~~~L~~il~~~~~~~~R~~a~v~Lk~~i~~~~------~~~w~----~l~~~~~~~lk~~Ll~~l~~~~~~~vr~-~ 123 (1076)
...+..|+..+.+.++..--.+=.-+|++.+..+. -+.|- --+.+.....-..|.+.+..-+....+. .
T Consensus 246 ~~vl~~Lctfi~~~~~s~f~eLE~~LL~~vL~~~~l~~lLa~DvWCFlaRygtaeLc~~hv~~L~~Lik~lp~~~~~~~~ 325 (559)
T PF14868_consen 246 QHVLVHLCTFIASLSPSAFPELERFLLENVLHPHFLCSLLAMDVWCFLARYGTAELCAHHVNLLAHLIKSLPSSSYQLIN 325 (559)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHcCCcchhHhh
Q ss_pred HHHHHHHHHhcccCCCCcchhHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhCCcchHhHHhhhHHHHHHHHHHHHh
Q 001442 124 LCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLIINFIQCLTSSADRDRFQDLLPLMMRTLTESLN 203 (1076)
Q Consensus 124 ~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~~~~~~~r~~al~~L~~l~~~~~~~l~~~~~~~~~~~l~p~~l~~l~~~~~ 203 (1076)
++..++++.....+ .+-.+++...-..++..+ +.....+. ++.+.+.-....-..+.+.....+.....
T Consensus 326 L~~LL~Rl~~~m~~-~~q~~~v~~f~p~~~~~n-------~~lw~~~~---~~~L~~~lr~~~~~~i~~~~~~~~~~~~~ 394 (559)
T PF14868_consen 326 LSILLRRLFFLMAP-DHQSEFVQDFSPSAETEN-------LLLWEGFP---LNALSDELRKQIVQEIFTLCFAFCQKWLS 394 (559)
T ss_pred HHHHHHHHHHhcCH-HHHHHHHHhcCccccccc-------hHHHHhcc---HHhCCHHHHHHHHHHHHHHHHHHHHHhcc
Q ss_pred -----CCCHHHHHHHHHHHHHHHccCcHHHHH----hHHHHHHHHHHHh-cCCCcchhHHHHHHHHHHHHHHhhcccchh
Q 001442 204 -----NGNEATAQEALELLIELAGTEPRFLRR----QLVDVVGSMLQIA-EAESLEEGTRHLAIEFVITLAEARERAPGM 273 (1076)
Q Consensus 204 -----~~~~~~~~~~~~~l~~l~~~~~~~~~~----~l~~l~~~l~~~~-~~~~~~~~~r~~al~~l~~l~~~~~~~~~~ 273 (1076)
.+.-.....++.++...+......+.. -+-.++..++..+ .........-...+..+..+.. .+
T Consensus 395 ~~~~s~g~l~~~~~~LsalL~~c~~~~~~~d~~~~~~i~~ii~~lw~~~~~~~v~~~~~l~~~~~~lL~l~~------~~ 468 (559)
T PF14868_consen 395 PSSCSLGELGQLNFALSALLQVCNSSGSTIDMKDQTFIVEIISQLWSFLSSKQVSSQPYLQQTLSLLLSLLS------FF 468 (559)
T ss_pred cCCcCcchHhHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHHHHHHhchhhhccchHHHHHHHHHHHHHH------HH
Q ss_pred hccchh-hHHHHHHHHHHhhcCCCCCccccCCCCCCcccCCCCchhhHHHHHHHHHHHcCCC----cchHHHHHHHHHhh
Q 001442 274 MRKLPQ-FINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGN----TIVPVASEQLPAYL 348 (1076)
Q Consensus 274 ~~~~~~-~~~~l~~~l~~~l~~~~dd~~~~~~~~e~~d~~e~~~~~~a~~~l~~l~~~~~~~----~~~~~l~~~l~~~l 348 (1076)
.+.+.+ .+.+++-.+-..+.....+. ..-+..+.+..+++..-+. .+.|.+...+...+
T Consensus 469 ~~~l~~~~i~qv~~~l~~l~~~~pp~~----------------~kl~~~~FLs~lg~~~i~~~~q~~~~~~Ls~Lf~~LL 532 (559)
T PF14868_consen 469 IQLLDPQLIEQVLTELTSLFKSEPPDH----------------VKLALLDFLSSLGKLFIPESDQNPVSPALSELFHMLL 532 (559)
T ss_pred HHhcChHHHHHHHHHHHHHHhhCCCcc----------------chHHHHHHHHHhccccCCccccchhhhHHHHHHHHHh
Q ss_pred cCCChhHHHHHHHHHHHHHhhcH
Q 001442 349 AAPEWQKHHAALIALAQIAEGCA 371 (1076)
Q Consensus 349 ~~~~~~~r~aal~~l~~l~~~~~ 371 (1076)
.+++|-.++-|+.+++.++++.+
T Consensus 533 ~d~~Wll~q~ALeAF~~FAe~T~ 555 (559)
T PF14868_consen 533 ADRHWLLHQHALEAFGQFAERTS 555 (559)
T ss_pred cCCcHHHHHHHHHHHHHHhccCC
No 373
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=38.52 E-value=5.6e+02 Score=27.94 Aligned_cols=78 Identities=19% Similarity=0.274 Sum_probs=47.9
Q ss_pred hhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccCcHHHHHhHHHHHHHHH----HHhcC--CCcc---------hhHH
Q 001442 189 DLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSML----QIAEA--ESLE---------EGTR 253 (1076)
Q Consensus 189 ~l~p~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~l~----~~~~~--~~~~---------~~~r 253 (1076)
.++..-++.+...+++........+++.+..++...+......+-.-+++-. .++.. .+.+ .++|
T Consensus 52 ~iL~~~~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR 131 (330)
T PF11707_consen 52 SILQNHLKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIR 131 (330)
T ss_pred HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHH
Confidence 3343346677777888788888899999999998444333332222222211 12110 0001 2899
Q ss_pred HHHHHHHHHHHHh
Q 001442 254 HLAIEFVITLAEA 266 (1076)
Q Consensus 254 ~~al~~l~~l~~~ 266 (1076)
...+.||.++.+.
T Consensus 132 ~~fI~F~Lsfl~~ 144 (330)
T PF11707_consen 132 TNFIRFWLSFLSS 144 (330)
T ss_pred HHHHHHHHHHHcc
Confidence 9999999999984
No 374
>KOG0929 consensus Guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.44 E-value=1.1e+03 Score=31.36 Aligned_cols=241 Identities=11% Similarity=0.152 Sum_probs=116.0
Q ss_pred cCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhh-chhHHh--hhhhhhHH
Q 001442 349 AAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDL-GPDLQN--QFHPQVLP 425 (1076)
Q Consensus 349 ~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~-~~~~~~--~~~~~ll~ 425 (1076)
.+.+..+|+..+.|...- .+.-...++..+-..-.|.+..+-..+...++.+.... ...+.. ..+...++
T Consensus 1047 ~s~s~~Irelv~rC~~~n-------ikSGWk~if~i~~~aA~~~~~~iv~~~fe~v~~i~~~~f~~~~~~~~~sf~d~v~ 1119 (1514)
T KOG0929|consen 1047 RSSSAEIRELVVRCISSN-------IKSGWKNIFKIFTTAASDSSKNIVELAFETVSKILQELFENVFPQEMDSFKDCVK 1119 (1514)
T ss_pred ccCcchhHHHHHhhhhhh-------hhhhhhHHHHHHHHhhccchhhHHHHhHHHHHHHHHHhhhhhchhhhHHHHHHHH
Confidence 355677787777776621 11223345555555566666666666666666333222 111100 12333333
Q ss_pred HHHhhccCCCChhHHHHHHHHHHHh----hhc-----CC------cc-cccCchHHHHHHHHHHhhcCchhHHHHHHHHH
Q 001442 426 ALAGAMDDFQNPRVQAHAASAVLNF----SEN-----CT------PE-ILTPYLDGIVSKLLVLLQNGKQMVQEGALTAL 489 (1076)
Q Consensus 426 ~l~~~l~~~~~~~v~~~a~~aL~~l----~~~-----~~------~~-~l~~~l~~ll~~l~~~l~~~~~~v~~~al~ai 489 (1076)
.+.....+...+.....+...+... .+. .. .+ ...-|+| ++-.+-....+....+|..++..+
T Consensus 1120 cl~~F~~~~~~~~~s~~aI~~lr~ca~k~~e~~~~~~~~~~~~~~~~~~~~~wfP-~l~~ls~i~~~~~~~vr~~al~vl 1198 (1514)
T KOG0929|consen 1120 CLEEFTKNLGFPDDSLNAIRFLRLCALKLAEGVYNEKLKVGKDSEFDVWNSGWFP-MLFQLSKIINDYRLEVRKRALEVL 1198 (1514)
T ss_pred HHHHHHHhcCCCccchHHHHHHHHHHHHhccccchhhcccccccccccceeeeeh-hHhhhhHHhhccHHHHHHHHHHHH
Confidence 3333322211222222222222111 111 11 01 1122333 333444444477889999999999
Q ss_pred HHHHHHhHhhHHh-hHhhhHHHHHHHHhccCCchhhhhH-----HHHHHHHHHHHHHhchhhhhhh-------HHHHHHH
Q 001442 490 ASVADSSQEHFQK-YYDAVMPFLKAILVNATDKSNRMLR-----AKSMECISLVGMAVGKDKFRDD-------AKQVMEV 556 (1076)
Q Consensus 490 ~~l~~~~~~~~~~-~~~~i~~~L~~~l~~~~~~~~~~lr-----~~a~~~l~~i~~~~g~~~~~~~-------~~~ii~~ 556 (1076)
-.+....|+.|.+ +...+...+++++..-..+.+...+ .....++-.+. +.|..+ ++.++..
T Consensus 1199 F~il~~~g~~F~~~~We~v~~~~fpIF~~~~~~~~~~~~~eW~~tT~~~Al~~~v-----~lf~~~~~~l~~lL~~~~~l 1273 (1514)
T KOG0929|consen 1199 FDILKEHGDDFSKEFWEDVFRILFPIFDNVKLDEDESEKDEWLSTTCNHALQALV-----DLFTQFFKQLNNLLPKVLGL 1273 (1514)
T ss_pred HHHHHhhhhhccHHHHHHHHHheeecccccCcccchhhhhHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHH
Confidence 9999999998874 4455555666666542211111111 22222222222 223333 3333333
Q ss_pred HHHHhcCCCCCCChhhHHHHHHHHHHHHHhccCcccch-hhhhHHHHHhc
Q 001442 557 LMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYM-SVVMPPLLQSA 605 (1076)
Q Consensus 557 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l-~~i~~~ll~~~ 605 (1076)
+..... ..+..+......|+.++....|..|...- ..+...+.+.+
T Consensus 1274 l~~ci~---~~n~~la~~g~~cl~~l~~~n~~~fse~~Wde~~~~~~e~~ 1320 (1514)
T KOG0929|consen 1274 LVGCIK---QDNQQLARIGTSCLLQLVSSNGEKFSEEDWDEICNCILEAF 1320 (1514)
T ss_pred HHHHhc---CcchhhHHhHHHHHHHHHHhcccccCHhhHHHHHHHHHHHH
Confidence 333211 12334555667888899888888876543 33444444444
No 375
>smart00145 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain). PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation.
Probab=38.44 E-value=3.3e+02 Score=26.64 Aligned_cols=78 Identities=21% Similarity=0.190 Sum_probs=36.0
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHcc-CCCHHHHHHHHHHHHHhcccCCCCcccCCCHhH
Q 001442 22 APFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQR-SPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHT 100 (1076)
Q Consensus 22 ~~l~~lL~~~~s~d~~~r~~Ae~~L~~~~~~~p~~~~~~L~~il~~-~~~~~~R~~a~v~Lk~~i~~~~~~~w~~l~~~~ 100 (1076)
+.+..+|..+.=.+....+++.+.+..+..-+| ...+++|.. -.++.||++|.-.|++ ++++.
T Consensus 44 ~aL~~~L~sv~W~~~~e~~e~~~ll~~W~~~~~----~~aL~LL~~~~~~~~Vr~yAV~~L~~------------~~d~~ 107 (184)
T smart00145 44 KALPKFLLSVNWSDADEVAQALSLLKKWAPLDP----EDALELLSPKFPDPFVRAYAVERLES------------ASDEE 107 (184)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHcCCCCCH----HHHHHHhCccCCCHHHHHHHHHHHHh------------CCHHH
Confidence 344444433333344445555555555544222 223344432 2356666666655442 23444
Q ss_pred HHHHHHHHHHHHhhc
Q 001442 101 QSSLKSMLLQSIQLE 115 (1076)
Q Consensus 101 ~~~lk~~Ll~~l~~~ 115 (1076)
......+|.|+|.-|
T Consensus 108 l~~yLpQLVQaLr~E 122 (184)
T smart00145 108 LLLYLLQLVQALKYE 122 (184)
T ss_pred HHHHHHHHHHHHHcc
Confidence 444455555555544
No 376
>smart00582 RPR domain present in proteins, which are involved in regulation of nuclear pre-mRNA.
Probab=38.32 E-value=1.6e+02 Score=26.29 Aligned_cols=61 Identities=10% Similarity=0.085 Sum_probs=39.8
Q ss_pred HHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCc
Q 001442 385 VLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTP 456 (1076)
Q Consensus 385 l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~aL~~l~~~~~~ 456 (1076)
.+..|......++....|++... .+...++..+.+.+.. ..+.-+...++.+..++.++..
T Consensus 5 ~L~~L~~s~~~I~~lt~~~~~~~----------~~a~~Iv~~i~~~~~~-~~~~~kL~~LYlindIl~n~~~ 65 (121)
T smart00582 5 KLESLNNSQESIQTLTKWAIEHA----------SHAKEIVELWEKYIKK-APPPRKLPLLYLLDSIVQNSKR 65 (121)
T ss_pred HHHhccccHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHh-CCccceehhHHhHHHHHHHHhh
Confidence 34555666677887777777553 2334567777776666 4445566778888888877653
No 377
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=37.42 E-value=7.6e+02 Score=33.12 Aligned_cols=156 Identities=8% Similarity=0.064 Sum_probs=88.8
Q ss_pred CcchHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhch
Q 001442 334 NTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGP 413 (1076)
Q Consensus 334 ~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~ 413 (1076)
+..++.++.....++.+.+..++..|......+-..+..... .+++..++..+.+.+..-..+|+..|..++...+.
T Consensus 430 ~~~f~siL~la~~Ll~S~e~~v~~FG~~~Y~~lF~~fds~~q---qeVv~~Lvthi~sg~~~ev~~aL~vL~~L~~~~~~ 506 (1426)
T PF14631_consen 430 KDYFPSILSLAQSLLRSKEPSVREFGSHLYKYLFKEFDSYCQ---QEVVGALVTHIGSGNSQEVDAALDVLCELAEKNPS 506 (1426)
T ss_dssp TTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS-HHHH---HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH-HH
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhccchhH---HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhccHH
Confidence 367888888888899999999999999888888777644222 23454554444333444446889999888876544
Q ss_pred hHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCchhHHHHHHHHHHHHH
Q 001442 414 DLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVA 493 (1076)
Q Consensus 414 ~~~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~aL~~l~~~~~~~~l~~~l~~ll~~l~~~l~~~~~~v~~~al~ai~~l~ 493 (1076)
.+ .. +..++..++..+.+-....+| ..+..|..++-.-... -...-+++.-.+-+.+.+++...|...+.+.-+++
T Consensus 507 ~l-~~-fa~~l~giLD~l~~Ls~~qiR-~lf~il~~La~~~~~~-~s~i~del~ivIRKQLss~~~~~K~~GIIGav~~i 582 (1426)
T PF14631_consen 507 EL-QP-FATFLKGILDYLDNLSLQQIR-KLFDILCTLAFSDSSS-SSSIQDELHIVIRKQLSSSNPKYKRIGIIGAVMMI 582 (1426)
T ss_dssp HH-HH-THHHHHGGGGGGGG--HHHHH-HHHHHHHHHHHHHSS----HHHHHHHHHHHHHHT-SSHHHHHHHHHHHHHHH
T ss_pred HH-HH-HHHHHHHHHHHHhcCCHHHHH-HHHHHHHHHhcCCccc-chhhHHHHHHHHHHhhcCCcHHHHHHhHHHHHHHH
Confidence 44 23 345555566666653334443 3455555554221211 11223455555667777887777665443333333
Q ss_pred HHh
Q 001442 494 DSS 496 (1076)
Q Consensus 494 ~~~ 496 (1076)
..+
T Consensus 583 ~~l 585 (1426)
T PF14631_consen 583 KHL 585 (1426)
T ss_dssp HHT
T ss_pred HHH
Confidence 333
No 378
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=36.89 E-value=88 Score=36.56 Aligned_cols=74 Identities=7% Similarity=0.040 Sum_probs=48.3
Q ss_pred hhHHHHHHHHHHHcCCCcchHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCC
Q 001442 318 SVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRD 391 (1076)
Q Consensus 318 ~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d 391 (1076)
..|..+++.+.+..|-..+...+-|.+.+...+..+..-.-+=...|...+...+.+..|+..++..|...-..
T Consensus 360 SLasK~mde~mkl~Gm~YLh~tLkPvi~kI~eekK~cEiDP~Kv~~g~~lE~n~~nLr~y~~~lf~ait~S~~~ 433 (800)
T KOG2059|consen 360 SLASKMMDEFMKLAGMHYLHVTLKPVIDKIFEEKKPCEIDPSKVKVGDNLETNLENLRVYVGRLFEAITKSSTR 433 (800)
T ss_pred chHHHHHHHHHHHhchHHHHHHhHHHHHHHHhhcCCcccChhhhhhhhHHHhhHHHHHHHHHHHHHHHHhcccc
Confidence 36889999999998866666667777777776543333223333444445655566677788888777765543
No 379
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=36.85 E-value=6.3e+02 Score=28.06 Aligned_cols=230 Identities=14% Similarity=0.146 Sum_probs=109.1
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHccCcHHHHH----hHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHhhcc
Q 001442 194 MMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRR----QLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARER 269 (1076)
Q Consensus 194 ~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~----~l~~l~~~l~~~~~~~~~~~~~r~~al~~l~~l~~~~~~ 269 (1076)
++..+...+-+++.++|..+++++-.++... ..+.. |++.++-..+. .....+.=|++|+.++..+.+..+
T Consensus 26 ~~~~i~~~lL~~~~~vraa~yRilRy~i~d~-~~l~~~~~l~id~~ii~SL~---~~~~~~~ER~QALkliR~~l~~~~- 100 (371)
T PF14664_consen 26 FGERIQCMLLSDSKEVRAAGYRILRYLISDE-ESLQILLKLHIDIFIIRSLD---RDNKNDVEREQALKLIRAFLEIKK- 100 (371)
T ss_pred HHHHHHHHHCCCcHHHHHHHHHHHHHHHcCH-HHHHHHHHcCCchhhHhhhc---ccCCChHHHHHHHHHHHHHHHhcC-
Confidence 3343433333455889999999998777643 22222 33333332222 222234459999999999998421
Q ss_pred cchhhccchhhHHHHHHHHHHhhcCCCCCccccCCCCCCcccCCCCchhhHHHHHHHHHHHcCCCcchH-HHHHHHHHhh
Q 001442 270 APGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVP-VASEQLPAYL 348 (1076)
Q Consensus 270 ~~~~~~~~~~~~~~l~~~l~~~l~~~~dd~~~~~~~~e~~d~~e~~~~~~a~~~l~~l~~~~~~~~~~~-~l~~~l~~~l 348 (1076)
++ +.++ ..++..++...... ++..+.++.+++-.++-.-| +-+.. .-+..+.+.+
T Consensus 101 ~~---~~~~---~~vvralvaiae~~-----------------~D~lr~~cletL~El~l~~P-~lv~~~gG~~~L~~~l 156 (371)
T PF14664_consen 101 GP---KEIP---RGVVRALVAIAEHE-----------------DDRLRRICLETLCELALLNP-ELVAECGGIRVLLRAL 156 (371)
T ss_pred Cc---ccCC---HHHHHHHHHHHhCC-----------------chHHHHHHHHHHHHHHhhCH-HHHHHcCCHHHHHHHH
Confidence 11 1221 33444444433211 12245666666655554432 11100 0112222333
Q ss_pred cCCChhHHHHHHHHHHHHHhhcHH--HHHH--hHHHHHHHHHhh----CCCCCh-hHHHHHHHHHHHhhhhhchhHH-hh
Q 001442 349 AAPEWQKHHAALIALAQIAEGCAK--VMVK--NLEQVLSMVLNS----FRDPHP-RVRWAAINAIGQLSTDLGPDLQ-NQ 418 (1076)
Q Consensus 349 ~~~~~~~r~aal~~l~~l~~~~~~--~~~~--~l~~i~~~l~~~----l~d~~~-~vr~~a~~~l~~l~~~~~~~~~-~~ 418 (1076)
.+.....-++.+.++-.+.+.... .+.+ .++.++..+... ..+... .--..+..++..+.+.-++-+. ..
T Consensus 157 ~d~~~~~~~~l~~~lL~lLd~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~ 236 (371)
T PF14664_consen 157 IDGSFSISESLLDTLLYLLDSPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSM 236 (371)
T ss_pred HhccHhHHHHHHHHHHHHhCCcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeec
Confidence 333333455555555555544321 1111 133333333322 222221 1233444555555443322210 01
Q ss_pred hhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhc
Q 001442 419 FHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSEN 453 (1076)
Q Consensus 419 ~~~~ll~~l~~~l~~~~~~~v~~~a~~aL~~l~~~ 453 (1076)
.--.-+..++..|.- |++.+|......+-.+..-
T Consensus 237 ~~~~~lksLv~~L~~-p~~~ir~~Ildll~dllri 270 (371)
T PF14664_consen 237 NDFRGLKSLVDSLRL-PNPEIRKAILDLLFDLLRI 270 (371)
T ss_pred CCchHHHHHHHHHcC-CCHHHHHHHHHHHHHHHCC
Confidence 111567778888888 8888888877776666543
No 380
>PF00613 PI3Ka: Phosphoinositide 3-kinase family, accessory domain (PIK domain); InterPro: IPR001263 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The role of the accessory domain of phosphoinositide 3-kinase (PI3-kinase) is unclear. It may be involved in substrate presentation [].; GO: 0004428 inositol or phosphatidylinositol kinase activity; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2WXL_A 4AJW_B 2WXQ_A 2WXP_A 2WXM_A ....
Probab=36.66 E-value=1.7e+02 Score=28.69 Aligned_cols=80 Identities=24% Similarity=0.214 Sum_probs=40.4
Q ss_pred ChHHHHHHHHHhcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHcc-CCCHHHHHHHHHHHHHhcccCCCCcccCCCH
Q 001442 20 DSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQR-SPHPEARAMAAVLLRKLLTRDDSFLWPRLSL 98 (1076)
Q Consensus 20 ~~~~l~~lL~~~~s~d~~~r~~Ae~~L~~~~~~~p~~~~~~L~~il~~-~~~~~~R~~a~v~Lk~~i~~~~~~~w~~l~~ 98 (1076)
+++.+..+|..+--.+.+..+++.+.|..+..-+|. ..+++|.. =.++.||++|.-.|+ ++++
T Consensus 43 ~p~aL~~~L~sv~w~~~~~~~~~~~ll~~W~~~~p~----~AL~LL~~~f~~~~VR~yAv~~L~------------~~~d 106 (184)
T PF00613_consen 43 NPEALPKLLRSVDWWNPEEVSEAYQLLLQWPPISPE----DALELLSPNFPDPFVRQYAVRRLE------------SLSD 106 (184)
T ss_dssp SGGGHHHHHTTSTTTSHHHHHHHHHHHHTSHCTTHH----HHHHCTSTT---HHHHHHHHHHHC------------TS-H
T ss_pred CchHHHHHHhhCCCCchhhHHHHHHHHHcCCCCCHH----HHHHHHHhhccHHHHHHHHHHHHH------------HcCc
Confidence 345555555544444555556666666665553222 23444433 234667777665543 2345
Q ss_pred hHHHHHHHHHHHHHhhc
Q 001442 99 HTQSSLKSMLLQSIQLE 115 (1076)
Q Consensus 99 ~~~~~lk~~Ll~~l~~~ 115 (1076)
+.......+|.++|..|
T Consensus 107 ~~l~~yLpQLVQaLr~e 123 (184)
T PF00613_consen 107 EELLFYLPQLVQALRYE 123 (184)
T ss_dssp HHHHHHHHHHHHHGGGS
T ss_pred hHHHHHHHHHHHHheec
Confidence 55555556666666554
No 381
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=36.59 E-value=5.2e+02 Score=27.02 Aligned_cols=196 Identities=16% Similarity=0.124 Sum_probs=109.3
Q ss_pred HHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHh-hhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccc
Q 001442 381 VLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQN-QFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEIL 459 (1076)
Q Consensus 381 i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~-~~~~~ll~~l~~~l~~~~~~~v~~~a~~aL~~l~~~~~~~~l 459 (1076)
++..++..+.-.++.++..-. +..++.. + ..++.+-+.+++++.. +.....+...|..+........+
T Consensus 30 lL~~~l~k~dl~~~~~~~~L~-------~~~p~~w-e~~~f~Glq~Ll~KGL~S---s~t~e~tl~lL~~L~~~~~~~li 98 (262)
T PF14225_consen 30 LLNKLLDKLDLDDPDVRDVLE-------SSQPQLW-EWGNFEGLQPLLLKGLRS---SSTYELTLRLLSRLTPLPDDPLI 98 (262)
T ss_pred HHHHHHhhcCCchHHHHHHHH-------HhCCccc-cCCCchhHHHHHhCccCC---CCcHHHHHHHHHHHhcCCCcccc
Confidence 455555555545555554332 2333322 2 3567788999999988 33456778888888766443333
Q ss_pred cC-------chHHHHHHHHHHhhcCch----hHHHHHHHHHHHHHHHhHhhHHhhHhhhHHHHHHHHhccCCchhhhhHH
Q 001442 460 TP-------YLDGIVSKLLVLLQNGKQ----MVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRA 528 (1076)
Q Consensus 460 ~~-------~l~~ll~~l~~~l~~~~~----~v~~~al~ai~~l~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~~~~lr~ 528 (1076)
.+ .+-..+|.++..++++++ ..-..+...|+.++...+. +-+..++...... ...+.
T Consensus 99 g~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~~~---~~La~il~~ya~~--~fr~~------- 166 (262)
T PF14225_consen 99 GDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQGL---PNLARILSSYAKG--RFRDK------- 166 (262)
T ss_pred CCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHhCCC---ccHHHHHHHHHhc--CCCCH-------
Confidence 22 234567777777777761 2233455666766654332 2333333322211 01111
Q ss_pred HHHHHHHHHHHHhchhhhh-hhHHHHHHHHHHHhcCCCCCCChhhHHHHHHHHHHHHHhccCcccchhhhhHHHHHhcc
Q 001442 529 KSMECISLVGMAVGKDKFR-DDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQ 606 (1076)
Q Consensus 529 ~a~~~l~~i~~~~g~~~~~-~~~~~ii~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~i~~~ll~~~~ 606 (1076)
-+.+..++..+. +.|. .+.-+++.+++.+..++ -..++..++..+..+.....-. .|+-+.++..+++.++
T Consensus 167 --~dfl~~v~~~l~-~~f~P~~~~~~l~~Ll~lL~n~---~~w~~~~~L~iL~~ll~~~d~~-~~~~~dlispllrlL~ 238 (262)
T PF14225_consen 167 --DDFLSQVVSYLR-EAFFPDHEFQILTFLLGLLENG---PPWLRRKTLQILKVLLPHVDMR-SPHGADLISPLLRLLQ 238 (262)
T ss_pred --HHHHHHHHHHHH-HHhCchhHHHHHHHHHHHHhCC---cHHHHHHHHHHHHHHhccccCC-CCcchHHHHHHHHHhC
Confidence 123444444444 4554 45567888888865432 2346777777777666655444 5577788888888885
No 382
>PF14222 MOR2-PAG1_N: Cell morphogenesis N-terminal
Probab=36.22 E-value=7.9e+02 Score=29.05 Aligned_cols=161 Identities=10% Similarity=0.136 Sum_probs=82.6
Q ss_pred HHHHHHHHHccC-CCHHHHHHHHHHHHHhcccC------C--CCcccCCCHhHHHHHHHHHHHHHhhcchhhHHHHHHHH
Q 001442 57 LTLKLAHLLQRS-PHPEARAMAAVLLRKLLTRD------D--SFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDT 127 (1076)
Q Consensus 57 ~~~~L~~il~~~-~~~~~R~~a~v~Lk~~i~~~------~--~~~w~~l~~~~~~~lk~~Ll~~l~~~~~~~vr~~~~~~ 127 (1076)
|+..+....... .+.++++.-+-+|-..+..- + ...|. +..+.|...+.+...+.....+- --.
T Consensus 130 Fm~~l~~~f~~~h~~~~ik~A~~~~l~~lLlPvA~~~~~evn~P~W~----~~v~~i~~~~~~~~~K~khw~~a---fPL 202 (552)
T PF14222_consen 130 FMQSLAKFFLEAHKKSDIKHAYCEVLVELLLPVAATATAEVNHPKWK----EAVETIYPRAAKMMSKPKHWNVA---FPL 202 (552)
T ss_pred HHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcccccccccHHH----HHHHHHHHHHHHHHhCcchhhhH---HHH
Confidence 344444444445 56678888888877776531 0 11232 34445555666655532222221 222
Q ss_pred HHHHHh---cccCCCCcc-hhHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHH-HhhCCcchHhHHhhhHHHHHHHHHHH-
Q 001442 128 VSELAS---NILPENGWP-ELLPFMFQCVSSDSVKLQESAFLIFAQLIINFI-QCLTSSADRDRFQDLLPLMMRTLTES- 201 (1076)
Q Consensus 128 i~~ia~---~~~~~~~w~-~ll~~l~~~~~~~~~~~r~~al~~L~~l~~~~~-~~l~~~~~~~~~~~l~p~~l~~l~~~- 201 (1076)
+..+.. .+.-..+|. +++..+...+++. ..|..++.++..++=.++ ....++ ...-..-+..+++.++..
T Consensus 203 ~t~lLCvS~~e~F~~~W~~~~i~~~~~klKdk--~~r~~~l~~l~RLlWvYL~~r~~Es--~n~T~krL~~i~~~lfp~~ 278 (552)
T PF14222_consen 203 VTTLLCVSPKEFFLSNWLPSLIESLISKLKDK--ETRPVALECLSRLLWVYLVYRCPES--LNNTTKRLDSIFKLLFPKG 278 (552)
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHHHHhhcCCh--hhhHHHHHHHHHHHHHHHhcccCCC--chHHHHHHHHHHHHHccCC
Confidence 222222 111114788 6888888877765 678889999988865555 222111 111122233344443321
Q ss_pred ---HhCCCHHHHHHHHHHHHHHHccCcHHH
Q 001442 202 ---LNNGNEATAQEALELLIELAGTEPRFL 228 (1076)
Q Consensus 202 ---~~~~~~~~~~~~~~~l~~l~~~~~~~~ 228 (1076)
.-..|........+++..++..++++.
T Consensus 279 kk~~i~~D~~~~~~lv~ii~~I~~~~~df~ 308 (552)
T PF14222_consen 279 KKGWIPRDPEPLNPLVQIIRFIGYKHLDFA 308 (552)
T ss_pred CCcccCCChhhhhhHHHHHHhHhhhCcchH
Confidence 112344555666666666766666654
No 383
>PF14222 MOR2-PAG1_N: Cell morphogenesis N-terminal
Probab=34.47 E-value=8.4e+02 Score=28.84 Aligned_cols=149 Identities=12% Similarity=0.116 Sum_probs=76.8
Q ss_pred CChhHHhhhhHHHHHHHh----hcC-----CCchHHHHHHHHHHHHhhcCCCCCChhhhhHHHHHHHHHHHHHhhcCCCC
Q 001442 897 ENQDVRQAAVYGLGVCAE----FGG-----SVVKPLVGEALSRLNVVIRHPNALQPENLMAYDNAVSALGKICQFHRDSI 967 (1076)
Q Consensus 897 ~~~~vr~~a~~~lg~l~~----~~~-----~~~~~~~~~il~~L~~~l~~~~~~~~~~~~~~~na~~al~~i~~~~~~~~ 967 (1076)
.+.+++.+-+..+..+.. ... +.....+..+.+.+.++..+++.. . .+.--+..++-..|..
T Consensus 143 ~~~~ik~A~~~~l~~lLlPvA~~~~~evn~P~W~~~v~~i~~~~~~~~~K~khw-----~---~afPL~t~lLCvS~~e- 213 (552)
T PF14222_consen 143 KKSDIKHAYCEVLVELLLPVAATATAEVNHPKWKEAVETIYPRAAKMMSKPKHW-----N---VAFPLVTTLLCVSPKE- 213 (552)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHHhCcchh-----h---hHHHHHHHHHhcCcHH-
Confidence 456677777776665543 222 123445666677777776654321 1 1222223333333333
Q ss_pred CHhhHHHHHH-hhC----CCCCcHHHHHHHHHHHHHHHhhc----CCcccCcCcCchhhHHHHHHHHhcCCC---CCCH-
Q 001442 968 DAAQVVPAWL-NCL----PIKGDLIEAKIVHEQLCSMVERS----DSDLLGPNHQYLPKIVSVFAEILCGKD---LATE- 1034 (1076)
Q Consensus 968 ~~~~~l~~~l-~~l----p~~~d~~e~~~~~~~l~~li~~~----~~~~~~~~~~~l~~i~~~~~~~l~~~~---~~~~- 1034 (1076)
.|...|. +.+ +...|-..+..+..++++|+=.| .++-.+. -..++=+++...+++.+ .+.+
T Consensus 214 ---~F~~~W~~~~i~~~~~klKdk~~r~~~l~~l~RLlWvYL~~r~~Es~n~---T~krL~~i~~~lfp~~kk~~i~~D~ 287 (552)
T PF14222_consen 214 ---FFLSNWLPSLIESLISKLKDKETRPVALECLSRLLWVYLVYRCPESLNN---TTKRLDSIFKLLFPKGKKGWIPRDP 287 (552)
T ss_pred ---HHHHHHHHHHHHHHHhhcCChhhhHHHHHHHHHHHHHHHhcccCCCchH---HHHHHHHHHHHHccCCCCcccCCCh
Confidence 3444444 232 33345566777777777665433 2333332 13334444444555321 2233
Q ss_pred HHHHHHHHHHHHHHhhCChhhHHHHH
Q 001442 1035 QTLSRIVNLLKQLQQTLPPATLASTW 1060 (1076)
Q Consensus 1035 ~~~~~~~~~l~~l~~~~~~~~~~~~~ 1060 (1076)
+..+.++++++-+...+++=.+..++
T Consensus 288 ~~~~~lv~ii~~I~~~~~df~~~~iI 313 (552)
T PF14222_consen 288 EPLNPLVQIIRFIGYKHLDFAFRNII 313 (552)
T ss_pred hhhhhHHHHHHhHhhhCcchHHHHHH
Confidence 67778888888888888865455554
No 384
>COG1698 Uncharacterized protein conserved in archaea [Function unknown]
Probab=34.24 E-value=1.4e+02 Score=24.64 Aligned_cols=36 Identities=8% Similarity=0.195 Sum_probs=21.8
Q ss_pred hcCCChHHHHHH---HHHhcCC---ChHHHHHHHHHHHHhhh
Q 001442 16 ILGPDSAPFETL---ISHLMST---SNEQRSEAELLFNLCKQ 51 (1076)
Q Consensus 16 ~~~~~~~~l~~l---L~~~~s~---d~~~r~~Ae~~L~~~~~ 51 (1076)
.+.++.+.|.++ |..+.+. ..++|+.|++....+.+
T Consensus 7 ~~~d~~e~i~q~~~lL~~Ii~DttVPRNIRraA~~a~e~L~~ 48 (93)
T COG1698 7 LMNDSEEKINQVMQLLDEIIQDTTVPRNIRRAAEEAKEALNN 48 (93)
T ss_pred chhhhHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHhC
Confidence 344555555554 4443332 34689999988877665
No 385
>PF14228 MOR2-PAG1_mid: Cell morphogenesis central region
Probab=34.16 E-value=1.2e+03 Score=30.39 Aligned_cols=54 Identities=22% Similarity=0.247 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHccCcHHHHHhHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHH
Q 001442 210 AQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAE 265 (1076)
Q Consensus 210 ~~~~~~~l~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~r~~al~~l~~l~~ 265 (1076)
.+.++-+|.+++-.....+..|++.++...+-.+.+ ...-++.+|-++|..++.
T Consensus 933 ~qlalifL~dl~~~~~~~~~~~lP~LLH~~~~~lDH--~~~~V~e~a~~lL~~Li~ 986 (1120)
T PF14228_consen 933 GQLALIFLVDLAVEPDEDLREHLPLLLHVIFVLLDH--YTPLVQEQARELLVNLIH 986 (1120)
T ss_pred HHHHHHHHHHHHcCCcchHhhhhHHHHHHHHHcccC--CChHHHHHHHHHHHHHHH
Confidence 456788888888777888999999999988887743 467788888777777665
No 386
>KOG2085 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=31.75 E-value=7.5e+02 Score=27.42 Aligned_cols=80 Identities=16% Similarity=0.187 Sum_probs=44.9
Q ss_pred HHHHhHHHHHHHHHhhCCCCChhHHHHHHH--HHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHh
Q 001442 373 VMVKNLEQVLSMVLNSFRDPHPRVRWAAIN--AIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNF 450 (1076)
Q Consensus 373 ~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~--~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~aL~~l 450 (1076)
.+...+..+...|-.+++++|-.|...|+. ....+...+.... ...++.+.|+|.+..+..=+..+..-++..+..|
T Consensus 334 eFqk~~~PLf~qia~c~sS~HFQVAEraL~~wnNe~i~~Li~~n~-~~ilPiiFpaLyr~sk~hWN~~i~~l~~nvlk~f 412 (457)
T KOG2085|consen 334 EFQKIMVPLFRQIARCVSSPHFQVAERALYLWNNEYIRSLISQNA-EVILPIVFPALYRNSKSHWNQAIHNLILNVLKTF 412 (457)
T ss_pred HHHHHhHHHHHHHHHHcCChhHHHHHHHHHHHhhHHHHHHHHhcc-ceeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556677788888999999998777654 3333332222211 2334444455544444311344556666777776
Q ss_pred hhc
Q 001442 451 SEN 453 (1076)
Q Consensus 451 ~~~ 453 (1076)
++.
T Consensus 413 ~em 415 (457)
T KOG2085|consen 413 MEM 415 (457)
T ss_pred HHh
Confidence 654
No 387
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=31.67 E-value=2.2e+02 Score=24.63 Aligned_cols=57 Identities=19% Similarity=0.204 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHhhcHHHHHHhHHH--HHHHHHhh--CCCCChhHHHHHHHHHHHhhhhhch
Q 001442 356 HHAALIALAQIAEGCAKVMVKNLEQ--VLSMVLNS--FRDPHPRVRWAAINAIGQLSTDLGP 413 (1076)
Q Consensus 356 r~aal~~l~~l~~~~~~~~~~~l~~--i~~~l~~~--l~d~~~~vr~~a~~~l~~l~~~~~~ 413 (1076)
|...+..+|.++..++.. ...+.. -++.+++. +.+.+|.+|+-|.+|+..+++.-..
T Consensus 3 K~~lvrlianl~~~~~~~-Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~e 63 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKEV-QDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPE 63 (102)
T ss_pred HHHHHHHHHHHHhCCHHH-HHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHH
Confidence 445566777777666532 222221 15555554 4678999999999999999986543
No 388
>KOG1837 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.91 E-value=1.5e+03 Score=30.23 Aligned_cols=218 Identities=14% Similarity=0.125 Sum_probs=113.6
Q ss_pred HHHHHHHHHHHHhh-hchhhhHHHHHHhHhhhhcC--CCCHHHHHHH-HHHHHHHHHHhhhhhHhhHHhHHHHHHhhccC
Q 001442 821 QVGEILGTLIKTFK-AAFLPFFDELSSYLTPMWGK--DKTAEERRIA-ICIFDDVAEQCREAALKYYETYLPFLLEACND 896 (1076)
Q Consensus 821 ~~~~~l~~l~~~~~-~~~~~~~~~l~~~l~~~l~~--~~~~~~r~~a-l~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~ 896 (1076)
.+.++.-.++.... ..|.|+|-.+..+--+-+.. .....+|... ++....+.+.+...+.||+..++......+..
T Consensus 1368 sV~~~~v~~v~klse~~FRplf~~l~~WA~~~~~~~a~~~~~~Rli~fy~f~~~l~esl~si~~pYf~~~l~~~~~~L~k 1447 (1621)
T KOG1837|consen 1368 SVQNKAVAKVLKLSESTFRPLFSPLFDWAEPGLEAKAEQKCLERLISFYHFADYLQESLKSIVTPYFGYLLEPRVILLKK 1447 (1621)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhcccCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 34444444444443 45667766665554322111 1223345544 46777788888888999999988766555543
Q ss_pred CCh------------hHHhhhhHHHHHHHhhcC-----CCc-hHH---------HHHHHHHHHHhhcCCCCCChhhhhHH
Q 001442 897 ENQ------------DVRQAAVYGLGVCAEFGG-----SVV-KPL---------VGEALSRLNVVIRHPNALQPENLMAY 949 (1076)
Q Consensus 897 ~~~------------~vr~~a~~~lg~l~~~~~-----~~~-~~~---------~~~il~~L~~~l~~~~~~~~~~~~~~ 949 (1076)
-+. ..| -.+..|.++.++- .+. ..+ ...++..+.+..-.+. ....+.
T Consensus 1448 ~n~s~~~~~~~~~~~~~r--~~~~~~~Lvl~cl~~~~~~Dt~~~f~t~~r~~~~~~p~v~ql~n~~~e~~----~~~~v~ 1521 (1621)
T KOG1837|consen 1448 INASKHRWFWLLPVNQSR--KPLLLGTLVLNCLKDLFLFDTIESFVTKSRFELLSYPLVSQLVNVLLEFY----ASDIVS 1521 (1621)
T ss_pred hhhhhhhhhhhhcccccc--hhHHHHHHHHHHHHHHHhhhhhHHHHhhhhhhhhhhhhHHHHHHhhccch----hhhHHH
Confidence 221 122 2223333333221 011 111 1222333333211111 123577
Q ss_pred HHHHHHHHHHHhhcCCCCCHhhHHHHHHhhCCCCCcHHHHHHHHHHHHHHHhhcCCcccCcCcCchhhHHHHHHHHhcCC
Q 001442 950 DNAVSALGKICQFHRDSIDAAQVVPAWLNCLPIKGDLIEAKIVHEQLCSMVERSDSDLLGPNHQYLPKIVSVFAEILCGK 1029 (1076)
Q Consensus 950 ~na~~al~~i~~~~~~~~~~~~~l~~~l~~lp~~~d~~e~~~~~~~l~~li~~~~~~~~~~~~~~l~~i~~~~~~~l~~~ 1029 (1076)
+.++.|++++....++. +...+...+..... +.....--+...+-.++..-+..... ++|+.++++++.+...
T Consensus 1522 ~~li~~i~~~~~a~~~d--~~pl~~k~l~~trs-s~~~~r~~ai~~~~~l~~~lge~~~~----lL~q~iPfLaEL~ED~ 1594 (1621)
T KOG1837|consen 1522 KLLIAEIASDSVADKDD--LKPLNQKILKKTRS-SSRKARYLAIIQVKLLYTKLGENVIV----LLPQSIPFLAELMEDE 1594 (1621)
T ss_pred HHHHHHHHhhccCChhh--hHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHHHHhcchhHH----hhhhhhHHHHHHHhhh
Confidence 78888888887666654 44444444444322 11122223333344555444455554 7999999999999622
Q ss_pred CCCCHHHHHHHHHHHHHHHhhCChh
Q 001442 1030 DLATEQTLSRIVNLLKQLQQTLPPA 1054 (1076)
Q Consensus 1030 ~~~~~~~~~~~~~~l~~l~~~~~~~ 1054 (1076)
.++....+..+++++...+|..
T Consensus 1595 ---~~~Ve~~~q~li~q~e~~lGE~ 1616 (1621)
T KOG1837|consen 1595 ---DDEVECLCQKLIRQLEEVLGEP 1616 (1621)
T ss_pred ---HHHHHHHHHHHHHHHHHHhchh
Confidence 3556666777777777776654
No 389
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=29.82 E-value=7.9e+02 Score=27.06 Aligned_cols=53 Identities=15% Similarity=0.231 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccccHHHHHHHhhhcccccCCHHHHHHHHHHHHHHHH
Q 001442 647 LEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLR 704 (1076)
Q Consensus 647 ~~~k~~A~~~l~~i~~~~~~~~~p~l~~~~~~l~~~l~~~~~~~vr~~a~~~l~~L~~ 704 (1076)
..+|..|.+.+..+.++.++ ...+.++.-..+.++. .-.||..|++-|+.++.
T Consensus 38 ~k~k~lasq~ip~~fk~fp~----la~~a~da~~d~~ed~-d~~ir~qaik~lp~fc~ 90 (460)
T KOG2213|consen 38 SKEKRLASQFIPRFFKHFPS----LADEAIDAQLDLCEDD-DVGIRRQAIKGLPLFCK 90 (460)
T ss_pred hHHHHHHHHHHHHHHhhCch----hhhHHHHhhhcccccc-chhhHHHHHhccchhcc
Confidence 46788888888888765222 2344555555666653 67899999999988764
No 390
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=29.03 E-value=8.1e+02 Score=26.96 Aligned_cols=142 Identities=13% Similarity=0.178 Sum_probs=74.5
Q ss_pred chhhHHHHHHHHHHHHHhcccCCCCcchhHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhCCcchHhHHhhhH-HHH
Q 001442 116 SAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLIINFIQCLTSSADRDRFQDLL-PLM 194 (1076)
Q Consensus 116 ~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~~~~~~~r~~al~~L~~l~~~~~~~l~~~~~~~~~~~l~-p~~ 194 (1076)
+...-++.+++.|..+.++ +| .--.+.+..-+.++.+.+..+|.-|++-|-.++.. ..+.. ....+.+++ ..=
T Consensus 36 ~~~k~k~lasq~ip~~fk~-fp-~la~~a~da~~d~~ed~d~~ir~qaik~lp~fc~~--d~~~r--v~d~l~qLLnk~s 109 (460)
T KOG2213|consen 36 GTSKEKRLASQFIPRFFKH-FP-SLADEAIDAQLDLCEDDDVGIRRQAIKGLPLFCKG--DALSR--VNDVLVQLLNKAS 109 (460)
T ss_pred cchHHHHHHHHHHHHHHhh-Cc-hhhhHHHHhhhccccccchhhHHHHHhccchhccC--chhhh--hHHHHHHHHHHHH
Confidence 3555567888999988874 34 34455677777788899999999998887555322 11100 011111111 111
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHH-HccCcHHHHHhHH-HHHHHHHHHhcCCCcchhHHHHHHHHHHHHHH
Q 001442 195 MRTLTESLNNGNEATAQEALELLIEL-AGTEPRFLRRQLV-DVVGSMLQIAEAESLEEGTRHLAIEFVITLAE 265 (1076)
Q Consensus 195 l~~l~~~~~~~~~~~~~~~~~~l~~l-~~~~~~~~~~~l~-~l~~~l~~~~~~~~~~~~~r~~al~~l~~l~~ 265 (1076)
+..|+.-+..+|+..|+.++..+.+= ....++.+.+-+. .+++-+...+.+. ..+--...+.+|.++-.
T Consensus 110 l~~Lf~~~~~~D~~irek~l~fi~tKl~~l~~e~L~kevE~~iv~eikkal~dV--tgeef~lfm~~L~~lk~ 180 (460)
T KOG2213|consen 110 LTGLFGQIEVGDEQIREKVLKFIRTKLITLKGEVLTKEVERHIVDEIKKALEDV--TGEEFTLFMDILASLKS 180 (460)
T ss_pred HHHHHhhhhhhhHHHHHHHHHHHHHHhhcccHHHhhhHHHHHHHHHHHHHHHhc--cHHHHHHHHHHHHhhhc
Confidence 22333333345888888888877643 3333444443332 3334333444322 22223344555555543
No 391
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=29.00 E-value=3.3e+02 Score=26.53 Aligned_cols=60 Identities=12% Similarity=0.107 Sum_probs=42.3
Q ss_pred CCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhh
Q 001442 391 DPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFS 451 (1076)
Q Consensus 391 d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~aL~~l~ 451 (1076)
..+..+...++.|+..++..-.+--.--..+..++.+...|.. ++..+|..++..|..+|
T Consensus 127 ~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s-~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 127 EEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDS-PNIKTRKLALEILAALC 186 (187)
T ss_dssp TTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--T-TSHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCC-CCHHHHHHHHHHHHHHH
Confidence 4566778888889888876432211012356788899999988 89999999999988876
No 392
>PF01465 GRIP: GRIP domain; InterPro: IPR000237 The GRIP (golgin-97, RanBP2alpha,Imh1p and p230/golgin-245) domain [, , ] is found in many large coiled-coil proteins. It has been shown to be sufficient for targeting to the Golgi []. The GRIP domain contains a completely conserved tyrosine residue.; GO: 0005515 protein binding, 0000042 protein targeting to Golgi; PDB: 1R4A_H 1UPT_B.
Probab=28.87 E-value=1.4e+02 Score=21.39 Aligned_cols=35 Identities=23% Similarity=0.216 Sum_probs=25.3
Q ss_pred hHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhc
Q 001442 99 HTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASN 134 (1076)
Q Consensus 99 ~~~~~lk~~Ll~~l~~~~~~~vr~~~~~~i~~ia~~ 134 (1076)
...+.+|+.+++.|... ++..|..+..+|+++.+.
T Consensus 3 ~~~eYLKNvl~~fl~~~-~~~~~~~llpvi~tlL~f 37 (46)
T PF01465_consen 3 INLEYLKNVLLQFLESR-EPSEREQLLPVIATLLKF 37 (46)
T ss_dssp HHHHHHHHHHHHHHTTS-S---HHHHHHHHHHHTT-
T ss_pred hhHHHHHHHHHHHhcCC-chhhHHHHHHHHHHHHCC
Confidence 34678999999999854 478888899999988764
No 393
>PF04699 P16-Arc: ARP2/3 complex 16 kDa subunit (p16-Arc); InterPro: IPR006789 The Arp2/3 protein complex has been implicated in the control of actin polymerisation. The human complex consists of seven subunits which include the actin related proteins Arp2 and Arp3, and five others referred to as p41-Arc, p34-Arc, p21-Arc, p20-Arc, and p16-Arc. The precise function of p16-Arc is currently unknown. Its structure consists of a single domain containing a bundle of seven alpha helices [, ].; GO: 0030833 regulation of actin filament polymerization, 0005856 cytoskeleton; PDB: 3DWL_G 1TYQ_G 1U2V_G 2P9U_G 2P9L_G 1K8K_G 3DXM_G 2P9N_G 3DXK_G 2P9I_G ....
Probab=28.43 E-value=2.6e+02 Score=26.22 Aligned_cols=59 Identities=14% Similarity=0.181 Sum_probs=35.9
Q ss_pred hHHHHHHHHhcCCCCC-CHHHHHHHHHHHHHHHhhCChhhHHHHHhcCCHHHHHHHHhhh
Q 001442 1017 KIVSVFAEILCGKDLA-TEQTLSRIVNLLKQLQQTLPPATLASTWSSLQPQQQLALQSIL 1075 (1076)
Q Consensus 1017 ~i~~~~~~~l~~~~~~-~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~l~~~~ 1075 (1076)
+....+..+|...... ..+++.+...++-....++-...+.+++.+|+.++++.|.+|+
T Consensus 51 ~~~~ALk~aL~npP~~~k~~~K~~~~~~Vl~vL~s~k~sdI~~~v~~L~~~~~D~LMKYi 110 (152)
T PF04699_consen 51 DNEEALKAALENPPYGSKDAVKDRALQLVLEVLTSIKSSDIENAVKSLDSDQQDILMKYI 110 (152)
T ss_dssp -HHHHHHHHTSS--TT-S-HHHHHHHHHHHHHHHCS-GGGHHHHHCCS-HHHHHHHHHHH
T ss_pred CHHHHHHHhccCCCcCCCcchHHHHHHHHHHHHHHccHHHHHHHHHhCCHHHHhHHHHHH
Confidence 3455666666532211 1255555555555555556655699999999999999999885
No 394
>cd00869 PI3Ka_II Phosphoinositide 3-kinase (PI3K) class II, accessory domain (PIK domain); PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, class II PI3-kinases phosphorylate phosphoinositol (PtdIns), PtdIns(4)-phosphate, but not PtdIns(4,5)-bisphosphate. They are larger, having a C2 domain at the C-terminus.
Probab=28.06 E-value=5.5e+02 Score=24.69 Aligned_cols=49 Identities=14% Similarity=0.270 Sum_probs=30.5
Q ss_pred ccCCCHhHHHHHHHHHHHHHhh-cchhhHHHHHHHHHHHHHhcccCCCCcchhHHHHHHhhc
Q 001442 93 WPRLSLHTQSSLKSMLLQSIQL-ESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVS 153 (1076)
Q Consensus 93 w~~l~~~~~~~lk~~Ll~~l~~-~~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~ 153 (1076)
|..++++.- ++.|.. -++..||..+...+..+.. +.--..+|.|+|.++
T Consensus 66 W~p~~p~~A-------LeLL~~~f~d~~VR~yAV~~L~~~~d-----deL~~yLpQLVQaLk 115 (169)
T cd00869 66 WAPLRPLIA-------LELLLPKFPDQEVRAHAVQWLARLSN-----DELLDYLPQLVQALK 115 (169)
T ss_pred CCCCCHHHH-------HHHcCCcCCChHHHHHHHHHHHhCCH-----HHHHHHHHHHHHHHH
Confidence 888777543 222321 1356788888888886533 344567777777775
No 395
>PF03392 OS-D: Insect pheromone-binding family, A10/OS-D; InterPro: IPR005055 A class of small (14-20 Kd) water-soluble proteins, called odorant binding proteins (OBPs), first discovered in the insect sensillar lymph but also in the mucus of vertebrates, is postulated to mediate the solubilisation of hydrophobic odorant molecules, and thereby to facilitate their transport to the receptor neurons. The product of a gene expressed in the olfactory system of Drosophila melanogaster (Fruit fly), OS-D, shares features common to vertebrate odorant-binding proteins, but has a primary structure unlike odorant-binding proteins []. OS-D derivatives have subsequently been found in chemosensory organs of phylogenetically distinct insects, including cockroaches, phasmids and moths, suggesting that OS-D-like proteins seem to be conserved in the insect phylum.; PDB: 1KX9_A 1N8U_A 1KX8_A 1K19_A 1N8V_A 2GVS_A 2JNT_A.
Probab=27.30 E-value=66 Score=27.35 Aligned_cols=50 Identities=16% Similarity=0.225 Sum_probs=37.3
Q ss_pred hHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCCHHH
Q 001442 1017 KIVSVFAEILCGK-DLATEQTLSRIVNLLKQLQQTLPPATLASTWSSLQPQQ 1067 (1076)
Q Consensus 1017 ~i~~~~~~~l~~~-~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~ 1067 (1076)
.+=.++-+++... .-.++..+..+..+++.+.+.+|+. |+.+..++.|+.
T Consensus 39 ~lK~~ipeal~t~C~KCt~kQK~~~~kv~~~l~~~~P~~-w~~l~~KyDp~~ 89 (95)
T PF03392_consen 39 ELKKVIPEALKTNCAKCTPKQKENARKVIKFLKKNYPDE-WEELVKKYDPEG 89 (95)
T ss_dssp HHHHHHHHHHHCTTTTS-HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHTTT-
T ss_pred HHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHcCHHH-HHHHHHHHCCCc
Confidence 3444556666532 3357889999999999999999998 999999988764
No 396
>PF14911 MMS22L_C: S-phase genomic integrity recombination mediator, C-terminal
Probab=27.13 E-value=8.9e+02 Score=26.80 Aligned_cols=60 Identities=18% Similarity=0.186 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHh----hhhhHhhHHhHHHHHHhhcc--CCChhHHhhhhHHHHHHHhhcC
Q 001442 858 AEERRIAICIFDDVAEQC----REAALKYYETYLPFLLEACN--DENQDVRQAAVYGLGVCAEFGG 917 (1076)
Q Consensus 858 ~~~r~~al~~l~~l~~~~----~~~~~~~~~~ll~~l~~~l~--~~~~~vr~~a~~~lg~l~~~~~ 917 (1076)
+..-..++..+-++++.. .....-.+..++|.+++++- ++.+.+|..|...+..+.+.+.
T Consensus 225 ~p~l~~vL~fl~~Ll~~~~~~~~~~~~~~~~~~lp~lL~c~~~v~e~~~~k~~a~e~l~~mv~~~~ 290 (373)
T PF14911_consen 225 PPRLASVLAFLQQLLKRLQRQNENQILTLLRLVLPSLLECLMLVNEEPQVKKLATELLQYMVESCQ 290 (373)
T ss_pred CCcHHHHHHHHHHHHHhcCcccchhHHHHHHHhhHHHHHHHhhcCCCcchhHHHHHHHHHHHHccc
Confidence 334455677777777774 22333466777888888854 5678899999888888888776
No 397
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=25.87 E-value=3.7e+02 Score=24.97 Aligned_cols=28 Identities=18% Similarity=0.211 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHhhcchhhHHHHHHHHHHH
Q 001442 102 SSLKSMLLQSIQLESAKSISKKLCDTVSE 130 (1076)
Q Consensus 102 ~~lk~~Ll~~l~~~~~~~vr~~~~~~i~~ 130 (1076)
+++++.++..|. .++..|++.+-+|+-.
T Consensus 16 ~~l~~~~~~LL~-~~d~~vQklAL~cll~ 43 (141)
T PF07539_consen 16 DELYDALLRLLS-SRDPEVQKLALDCLLT 43 (141)
T ss_pred HHHHHHHHHHHc-CCCHHHHHHHHHHHHH
Confidence 455555555454 4566666666666643
No 398
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=25.86 E-value=4.8e+02 Score=25.31 Aligned_cols=58 Identities=9% Similarity=0.022 Sum_probs=40.0
Q ss_pred CCHHHHHHHHHHHHHHHHHh-hhhhHhhHHhHHHHHHhhccCCChhHHhhhhHHHHHHH
Q 001442 856 KTAEERRIAICIFDDVAEQC-REAALKYYETYLPFLLEACNDENQDVRQAAVYGLGVCA 913 (1076)
Q Consensus 856 ~~~~~r~~al~~l~~l~~~~-~~~~~~~~~~ll~~l~~~l~~~~~~vr~~a~~~lg~l~ 913 (1076)
........++.++..++..- |-...--.+..+..+..++.++++.+|..++..|+.+|
T Consensus 128 ~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 128 EDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp TCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 34445566788888887753 22222224677888999999999999999999888876
No 399
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=25.69 E-value=1.1e+03 Score=27.56 Aligned_cols=115 Identities=9% Similarity=0.150 Sum_probs=77.5
Q ss_pred HHhHHHHHH-HHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhc
Q 001442 375 VKNLEQVLS-MVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSEN 453 (1076)
Q Consensus 375 ~~~l~~i~~-~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~aL~~l~~~ 453 (1076)
...+..++. .++.+..|-++.+|--+...++..+...+..+. . ...+...--.|.| .+..||......+..++..
T Consensus 269 ~d~i~dicdsvfvsRy~Dv~d~IRv~c~~~L~dwi~lvP~yf~-k--~~~lry~GW~LSD-n~~~vRl~v~Kil~~L~s~ 344 (740)
T COG5537 269 RDEIKDICDSVFVSRYIDVDDVIRVLCSMSLRDWIGLVPDYFR-K--ILGLRYNGWSLSD-NHEGVRLLVSKILLFLCSR 344 (740)
T ss_pred HHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhcchHHHH-h--hhccccccccccc-chHHHHHHHHHHHHHHHhc
Confidence 345555554 556778899999999999999888766544331 1 1123333345677 7888999999999999876
Q ss_pred CCc-ccccCchHHHHHHHHHHhhcCchhHHHHHHHHHHHHH
Q 001442 454 CTP-EILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVA 493 (1076)
Q Consensus 454 ~~~-~~l~~~l~~ll~~l~~~l~~~~~~v~~~al~ai~~l~ 493 (1076)
-+. +.+..+++.....++.........||..++..+..+-
T Consensus 345 ~p~~d~ir~f~eRFk~rILE~~r~D~d~VRi~sik~l~~lr 385 (740)
T COG5537 345 IPHTDAIRRFVERFKDRILEFLRTDSDCVRICSIKSLCYLR 385 (740)
T ss_pred CCcchHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHH
Confidence 542 2345667777777787776655558877766665543
No 400
>PF03685 UPF0147: Uncharacterised protein family (UPF0147); InterPro: IPR005354 The proteins in this entry are functionally uncharacterised.; PDB: 2QZG_C 2QSB_A.
Probab=25.16 E-value=2.4e+02 Score=23.32 Aligned_cols=65 Identities=12% Similarity=0.250 Sum_probs=30.7
Q ss_pred HHHHHHHHHhcCC---ChHHHHHHHHHHHHhhhcC--chHHHHHHHHHHcc-CCCHHHHHHHHHHHHHhcc
Q 001442 22 APFETLISHLMST---SNEQRSEAELLFNLCKQQD--PDSLTLKLAHLLQR-SPHPEARAMAAVLLRKLLT 86 (1076)
Q Consensus 22 ~~l~~lL~~~~s~---d~~~r~~Ae~~L~~~~~~~--p~~~~~~L~~il~~-~~~~~~R~~a~v~Lk~~i~ 86 (1076)
.+..+.|..+.+. ..++|+.|++....+.... |.--...-..+|.. +.+|++...+=..+.+.++
T Consensus 9 ~~~~~~L~~I~~D~sVPRNIRr~a~ea~~~L~~e~~~~~vRaataIs~LdeIsnDPNmP~h~RT~IW~i~S 79 (85)
T PF03685_consen 9 KQAIQMLERIINDTSVPRNIRRAAEEAKEILNNEEESPGVRAATAISILDEISNDPNMPSHTRTLIWNIVS 79 (85)
T ss_dssp HHHHHHHHHHHT-TTS-HHHHHHHHHHHHHCT-TTS-HHHHHHHHHHHHHHHCT-TTS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCChHHHHHHHHHHHHHhCCCcchhHhHHHHHHHHHHhhcCCCCchHHHHHHHHHHH
Confidence 4555566666443 3468888888887766521 11111222223322 4555555555555554443
No 401
>PF14676 FANCI_S2: FANCI solenoid 2; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=24.96 E-value=5.8e+02 Score=24.24 Aligned_cols=118 Identities=17% Similarity=0.155 Sum_probs=60.3
Q ss_pred HHHHHHHHhcccCCCCcccCCCHhHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhcccC---CCCcchhHHHHHHhh
Q 001442 76 MAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILP---ENGWPELLPFMFQCV 152 (1076)
Q Consensus 76 ~a~v~Lk~~i~~~~~~~w~~l~~~~~~~lk~~Ll~~l~~~~~~~vr~~~~~~i~~ia~~~~~---~~~w~~ll~~l~~~~ 152 (1076)
++..+|.+.+..+ +..+.+|-+.+++.+....+..+ ....++++.+++.. | .+.|..+- .++..+
T Consensus 37 LG~~IL~~~fk~h---------~~~r~~Ile~l~~rI~~~s~~~~-~~~idlL~~lv~~~-p~~vle~~~~l~-~~ld~l 104 (158)
T PF14676_consen 37 LGIQILLELFKVH---------EMIRSEILEQLLNRIVTKSSSPS-SQYIDLLSELVRKA-PLTVLECSSKLK-ELLDYL 104 (158)
T ss_dssp HHHHHHHHHHHH----------GGGHHHHHHHHHHHHHH--SS---HHHHHHHHHHHHH--HHHHS-S-HHHH-GGGGGT
T ss_pred HHHHHHHHHHHHh---------HHHHHHHHHHHHHHHHhcCccch-hHHHHHHHHHHHHC-hHHHHHHHHHHH-HHHHHH
Confidence 8888888888776 45666676777776665444433 34567777777642 2 12333222 222222
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHHHhhCCcchHhHHhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 001442 153 SSDSVKLQESAFLIFAQLIINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLI 218 (1076)
Q Consensus 153 ~~~~~~~r~~al~~L~~l~~~~~~~l~~~~~~~~~~~l~p~~l~~l~~~~~~~~~~~~~~~~~~l~ 218 (1076)
..=.. +.|...+..+.+-+ .- . ..+-..++-++.+.+-+.+.+.|..|...|.
T Consensus 105 ~~lp~---~~a~~ll~Al~PLi----~~---s---~~lrd~lilvLRKamf~r~~~~R~~Av~Gfl 157 (158)
T PF14676_consen 105 SFLPG---DVAIGLLRALLPLI----KF---S---PSLRDSLILVLRKAMFSRELDARQMAVNGFL 157 (158)
T ss_dssp TTS-H---HHHHHHHHHHHHHH----TT-------HHHHHHHHHHHHHHTT-SSHHHHHHHHHHHH
T ss_pred HhCCH---HHHHHHHHHHHHHH----hc---C---HHHHHHHHHHHHHHHccccHHHHHHHHHHhc
Confidence 21112 22334443332111 00 0 2344567777888887788889988887764
No 402
>KOG1877 consensus Putative transmembrane protein cmp44E [General function prediction only]
Probab=23.60 E-value=1.4e+03 Score=28.06 Aligned_cols=80 Identities=14% Similarity=0.208 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHccCcHHHHHhHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHhhcccchhhccchhhHHHHHHH
Q 001442 208 ATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAI 287 (1076)
Q Consensus 208 ~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~ 287 (1076)
.....++++...+...+.+.+......++..+...+++. .++++..+++.+..++......|...+....|+.++.+.
T Consensus 71 ~~v~Iamea~~kLL~~C~eq~n~F~ssfL~mv~~LLes~--~~~~~ilg~~sf~~F~~i~~d~~sy~~~yd~Fi~kf~~l 148 (819)
T KOG1877|consen 71 GSVKIAMEAYDKLLQACKEQINLFVSSFLRMVQKLLESN--NDEMQILGTNSFVKFANIEEDGPSYHRNYDFFISKFSSL 148 (819)
T ss_pred cchhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcC--CCceeeehhhHHHHHHhhcccCchhhhhhHHHHHHHHHH
Confidence 334455666666655554444334445555555555443 677788889999998876556666666666677776665
Q ss_pred HH
Q 001442 288 LM 289 (1076)
Q Consensus 288 l~ 289 (1076)
+.
T Consensus 149 ~h 150 (819)
T KOG1877|consen 149 CH 150 (819)
T ss_pred hh
Confidence 53
No 403
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=23.57 E-value=3.7e+02 Score=29.89 Aligned_cols=148 Identities=14% Similarity=0.163 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHHHHH---HhhhchhhhHH--HHHHhHhhhhcCCC--CHHHHHHHHHHHHHHHHHhhhhhHhhH-HhHH
Q 001442 816 EEVFDQVGEILGTLIK---TFKAAFLPFFD--ELSSYLTPMWGKDK--TAEERRIAICIFDDVAEQCREAALKYY-ETYL 887 (1076)
Q Consensus 816 ~~~~~~~~~~l~~l~~---~~~~~~~~~~~--~l~~~l~~~l~~~~--~~~~r~~al~~l~~l~~~~~~~~~~~~-~~ll 887 (1076)
..++..+.+++..+.+ ..+...-+.++ .+...+...++... .+.+-..|+.++.+++..=+..+.-.. ..+.
T Consensus 74 ~~llK~lLk~l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~ 153 (379)
T PF06025_consen 74 QQLLKSLLKFLSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLI 153 (379)
T ss_pred HHHHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCCh
Confidence 4566677777777776 22223334445 24444444443222 345667788889988887554432211 2334
Q ss_pred HHHHhhcc-C---CChhHHhhhhHHHHHHHhhcC--CCchHHHHHHHHHHHHhhcCCCCCCh-hhhhHHHHHHHHHHHHH
Q 001442 888 PFLLEACN-D---ENQDVRQAAVYGLGVCAEFGG--SVVKPLVGEALSRLNVVIRHPNALQP-ENLMAYDNAVSALGKIC 960 (1076)
Q Consensus 888 ~~l~~~l~-~---~~~~vr~~a~~~lg~l~~~~~--~~~~~~~~~il~~L~~~l~~~~~~~~-~~~~~~~na~~al~~i~ 960 (1076)
+.+++.+. . ++.++-..---++|.+|-+.. +.++.. ..++.+.+++.+++.-.. ...+...+.-+++-.++
T Consensus 154 ~~~L~~i~~~~i~~s~e~l~~lP~~l~AicLN~~Gl~~~~~~--~~l~~~f~if~s~~~~~~l~~~d~a~~lG~~~DEL~ 231 (379)
T PF06025_consen 154 DAFLDAITAKGILPSSEVLTSLPNVLSAICLNNRGLEKVKSS--NPLDKLFEIFTSPDYVKALRRRDTASNLGNSFDELM 231 (379)
T ss_pred HHHHHHHhccCCCCcHHHHHHHHHHHhHHhcCHHHHHHHHhc--ChHHHHHHHhCCHHHHHHhcccchHHHHHHHHHHHH
Confidence 44555544 2 456666666677888887653 334332 556777777776532100 00022223345555666
Q ss_pred hhcCC
Q 001442 961 QFHRD 965 (1076)
Q Consensus 961 ~~~~~ 965 (1076)
+|+|.
T Consensus 232 RH~p~ 236 (379)
T PF06025_consen 232 RHHPS 236 (379)
T ss_pred ccCHH
Confidence 66665
No 404
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.56 E-value=1.8e+03 Score=29.12 Aligned_cols=130 Identities=15% Similarity=0.216 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH-HHHHHHHHHhHHHHHHhhcCCCCChH
Q 001442 725 QLSDFIIPALVEALHKEPDTEICASMLDSLNECIQISGPLLDEGQVRSIVDEI-KQVITASSSRKRERAERAKAEDFDAE 803 (1076)
Q Consensus 725 ~~~~~i~~~l~~~l~~~~~~~~~~~~l~~l~~~i~~~g~~~~~~~~~~~~~~l-~~~l~~~~~~~~~~~~~~~~ed~d~~ 803 (1076)
.+|=.++..|.+.. .|+-.+|+..+.+.+-+++..-|..+++...+.++-.+ .++|.+.-. +. -+++..+
T Consensus 993 ~lwi~ll~~L~~~~-~dsr~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~~-q~-------~~ewngk 1063 (1610)
T KOG1848|consen 993 VLWIMLLVHLADLC-EDSRAEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQPI-QN-------VSEWNGK 1063 (1610)
T ss_pred HHHHHHHHHHHHHh-ccchHHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhccccc-cc-------hhhhcch
Confidence 34444455444444 45678999999999999999888777776666555433 344442111 00 0111111
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhch---------hhhHHHHHHhHhhhhcCCCCHHHHHHHHHHHHHHHH
Q 001442 804 ESELIKEENEQEEEVFDQVGEILGTLIKTFKAAF---------LPFFDELSSYLTPMWGKDKTAEERRIAICIFDDVAE 873 (1076)
Q Consensus 804 ~~~~~~e~~e~~~~~~~~~~~~l~~l~~~~~~~~---------~~~~~~l~~~l~~~l~~~~~~~~r~~al~~l~~l~~ 873 (1076)
+. ++ +--+..+-.++.+++.+++.| +..++.++.++.+.. .+.+++....++..+.++..
T Consensus 1064 ei---qk------qwtet~~ltisgIaklf~e~fk~llnln~f~~vwe~ll~flkrl~-s~~s~e~slsai~~~qell~ 1132 (1610)
T KOG1848|consen 1064 EI---QK------QWTETSCLTISGIAKLFSENFKLLLNLNGFLDVWEELLQFLKRLH-SDISPEISLSAIKALQELLF 1132 (1610)
T ss_pred hH---hh------hhhhhhhhhHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH-hcCChHhHHHHHHHHHHHHH
Confidence 10 00 001133444555555555443 344444555444443 45567777777777766643
No 405
>PF06786 UPF0253: Uncharacterised protein family (UPF0253); InterPro: IPR009624 This is a group of proteins of unknown function.
Probab=23.48 E-value=2.4e+02 Score=21.36 Aligned_cols=49 Identities=20% Similarity=0.180 Sum_probs=32.4
Q ss_pred HHHHHHHHhhhcccccHHHHHHHhhhcccc-----cCCHHHHHHHHHHHHHHHH
Q 001442 656 MLCCYADELKEGFFPWIDQVAPTLVPLLKF-----YFHEEVRKAAVSAMPELLR 704 (1076)
Q Consensus 656 ~l~~i~~~~~~~~~p~l~~~~~~l~~~l~~-----~~~~~vr~~a~~~l~~L~~ 704 (1076)
.+..+....+..=..|+|+.+...++.|++ ...+++|+.|+.+-.+|+-
T Consensus 7 liR~~ya~IgSGd~gYiP~Ai~calk~Ln~iAad~~Lp~~vRE~AAfAAANLli 60 (66)
T PF06786_consen 7 LIRELYAQIGSGDQGYIPDAIGCALKTLNDIAADEALPEDVREQAAFAAANLLI 60 (66)
T ss_pred HHHHHHHHhcCCccccCcHHHHHHHHHHHHHHcccccCHHHHHHHHHHHHHHHH
Confidence 344444444555566888877777776654 2467899999988777764
No 406
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=23.25 E-value=6.5e+02 Score=23.90 Aligned_cols=100 Identities=9% Similarity=0.040 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHHHhhhchhhhHH-HHHHhHhhhhcCCC-CHHHHHHHHHHHHHHHHHhhhhhHhhH-HhHHHHHHhhc
Q 001442 818 VFDQVGEILGTLIKTFKAAFLPFFD-ELSSYLTPMWGKDK-TAEERRIAICIFDDVAEQCREAALKYY-ETYLPFLLEAC 894 (1076)
Q Consensus 818 ~~~~~~~~l~~l~~~~~~~~~~~~~-~l~~~l~~~l~~~~-~~~~r~~al~~l~~l~~~~~~~~~~~~-~~ll~~l~~~l 894 (1076)
.+..+..++..+... |--.+..+. .++..+..++.... +...-+.++++|..++.+.+..+.--. +--++.++..+
T Consensus 33 ~La~~L~af~eLMeH-g~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaILEs~Vl~S~~ly~~V~~evt~~~Li~hL 111 (160)
T PF11841_consen 33 ILAYALTAFVELMEH-GIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAILESIVLNSPKLYQLVEQEVTLESLIRHL 111 (160)
T ss_pred HHHHHHHHHHHHHhc-CcCchhhccHHHHHHHHHHHccccccchHHHHHHHHHHHHHhCCHHHHHHHhccCCHHHHHHHH
Confidence 344445555555542 432222111 23333444443332 566777889999998887444222211 22356788889
Q ss_pred cCCChhHHhhhhHHHHHHHhhcCC
Q 001442 895 NDENQDVRQAAVYGLGVCAEFGGS 918 (1076)
Q Consensus 895 ~~~~~~vr~~a~~~lg~l~~~~~~ 918 (1076)
++.++.+..+|...+..+..++++
T Consensus 112 q~~~~~iq~naiaLinAL~~kA~~ 135 (160)
T PF11841_consen 112 QVSNQEIQTNAIALINALFLKADD 135 (160)
T ss_pred HcCCHHHHHHHHHHHHHHHhcCCh
Confidence 999999999999999999988875
No 407
>PHA02836 putative transmembrane protein; Provisional
Probab=23.19 E-value=1.3e+02 Score=26.78 Aligned_cols=36 Identities=25% Similarity=0.367 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHhhhhh-HhhHHhHHHHHHhhccCC
Q 001442 862 RIAICIFDDVAEQCREAA-LKYYETYLPFLLEACNDE 897 (1076)
Q Consensus 862 ~~al~~l~~l~~~~~~~~-~~~~~~ll~~l~~~l~~~ 897 (1076)
-.-+++++.+++.+|..- ..|++.++|.+.+.+.|.
T Consensus 105 LtLiG~~gyise~wGk~k~~kYI~~im~l~fnfl~dn 141 (153)
T PHA02836 105 LTLIGIIGYISECCGKYGLEKYIQDLLLLLFNFLDDN 141 (153)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHcccc
Confidence 345799999999999754 459999999999988764
No 408
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=22.89 E-value=1.7e+03 Score=28.52 Aligned_cols=127 Identities=14% Similarity=0.031 Sum_probs=77.0
Q ss_pred chhhHHHHHHHHHHHcCCCcch-HHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhcH--HHHHHhHHHHHHHHHhhC-CC
Q 001442 316 NYSVGQECLDRLAIALGGNTIV-PVASEQLPAYLAAPEWQKHHAALIALAQIAEGCA--KVMVKNLEQVLSMVLNSF-RD 391 (1076)
Q Consensus 316 ~~~~a~~~l~~l~~~~~~~~~~-~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~--~~~~~~l~~i~~~l~~~l-~d 391 (1076)
.|..+.+-|+.....+| ..++ ...+.++--.+.+.+-.+|..++.+|-.+.+.-. +.+......+-..|+... .|
T Consensus 303 IRaiCiqeLgiWi~~yP-~~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~lFtsRFK~RIVeMadrd 381 (1048)
T KOG2011|consen 303 IRAICIQELGIWIKSYP-EIFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLELFTSRFKDRIVEMADRD 381 (1048)
T ss_pred HHHHHHHHHHHHHHhcc-HHHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHhhh
Confidence 56666666777777776 3333 4467777777888899999999999999987622 122223333334444444 67
Q ss_pred CChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHh
Q 001442 392 PHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNF 450 (1076)
Q Consensus 392 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~aL~~l 450 (1076)
-+..||..++..+...... ..+.. .=+..+...+-| .+++++.+|...+..-
T Consensus 382 ~~~~Vrav~L~~~~~~~~~--g~L~d----~di~~Vy~Li~d-~~r~~~~aa~~fl~~k 433 (1048)
T KOG2011|consen 382 RNVSVRAVGLVLCLLLSSS--GLLSD----KDILIVYSLIYD-SNRRVAVAAGEFLYKK 433 (1048)
T ss_pred cchhHHHHHHHHHHHHhcc--cccCh----hHHHHHHHHHhc-cCcchHHHHHHHHHHH
Confidence 7888998876654443211 11101 112234455556 7788888777665543
No 409
>PF12243 CTK3: CTD kinase subunit gamma CTK3
Probab=22.58 E-value=6.2e+02 Score=23.41 Aligned_cols=76 Identities=18% Similarity=0.167 Sum_probs=50.4
Q ss_pred HHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHhHhh---HHhh
Q 001442 427 LAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEH---FQKY 503 (1076)
Q Consensus 427 l~~~l~~~~~~~v~~~a~~aL~~l~~~~~~~~l~~~l~~ll~~l~~~l~~~~~~v~~~al~ai~~l~~~~~~~---~~~~ 503 (1076)
+++.|.. +-..++.+|..||.. .. .-+.+.++++..+++++...|...+..|..++..+... ..+|
T Consensus 13 ~L~~L~a-S~qSi~kaa~fAlk~--~~--------~~edL~~cIle~le~~~lN~R~nI~~fID~l~e~~~~~~~~~~~Y 81 (139)
T PF12243_consen 13 LLRRLNA-SQQSIQKAAQFALKN--RD--------MEEDLWSCILEQLEKENLNTRINIFYFIDSLCESSQKSKKYNYPY 81 (139)
T ss_pred HHHHcch-hHHHHHHHHHHHHHc--cc--------cHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHhcccccchh
Confidence 3445554 445666777777665 22 23567899999999998889999999999988876542 3455
Q ss_pred HhhhHHHHHH
Q 001442 504 YDAVMPFLKA 513 (1076)
Q Consensus 504 ~~~i~~~L~~ 513 (1076)
...+-.-|..
T Consensus 82 v~~l~~dL~~ 91 (139)
T PF12243_consen 82 VSMLQRDLPR 91 (139)
T ss_pred HHHHHHHHHH
Confidence 5544333333
No 410
>PF14961 BROMI: Broad-minded protein
Probab=21.98 E-value=8.9e+02 Score=31.13 Aligned_cols=84 Identities=13% Similarity=0.239 Sum_probs=56.9
Q ss_pred HHHHhhCCCCCh-hHHHHHHHHHHHhhhhhchh-HHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCccccc
Q 001442 383 SMVLNSFRDPHP-RVRWAAINAIGQLSTDLGPD-LQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILT 460 (1076)
Q Consensus 383 ~~l~~~l~d~~~-~vr~~a~~~l~~l~~~~~~~-~~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~aL~~l~~~~~~~~l~ 460 (1076)
..+...+.-.+| .||..|+..|..+. ..+ ...++++.+-..|..+|.| +++.+...+.....+++...+.....
T Consensus 164 q~i~d~ld~~~P~evR~eAlq~Lc~~p---~SDVls~E~W~~L~~~L~~~LsD-pD~~is~~~L~f~Ak~fssSpl~~tr 239 (1296)
T PF14961_consen 164 QLIADKLDPGQPKEVRLEALQILCSAP---PSDVLSCESWSVLRENLTDALSD-PDPEISDASLRFHAKMFSSSPLNMTR 239 (1296)
T ss_pred HHHHHhcCCCCchHHHHHHHHHHhcCC---hhhccccccHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhccCCchhhhH
Confidence 555666654444 69999888776543 222 2347899999999999999 99999999888888877665543222
Q ss_pred CchHHHHHHH
Q 001442 461 PYLDGIVSKL 470 (1076)
Q Consensus 461 ~~l~~ll~~l 470 (1076)
..+..++..+
T Consensus 240 EiYtsL~~~l 249 (1296)
T PF14961_consen 240 EIYTSLANHL 249 (1296)
T ss_pred HHHHHHHHHH
Confidence 2333444444
No 411
>PRK04964 hypothetical protein; Provisional
Probab=21.84 E-value=2.7e+02 Score=21.11 Aligned_cols=51 Identities=22% Similarity=0.286 Sum_probs=33.9
Q ss_pred HHHHHHHHHHhhhcccccHHHHHHHhhhcccc-----cCCHHHHHHHHHHHHHHHH
Q 001442 654 CNMLCCYADELKEGFFPWIDQVAPTLVPLLKF-----YFHEEVRKAAVSAMPELLR 704 (1076)
Q Consensus 654 ~~~l~~i~~~~~~~~~p~l~~~~~~l~~~l~~-----~~~~~vr~~a~~~l~~L~~ 704 (1076)
|..+..+....+..=..|+|+.+...++.|++ ...+++|+.|+.+-.+|+-
T Consensus 5 CelvR~~ya~IgSGd~gYiP~Ai~ca~k~L~~IAad~~Lp~~vRe~AAfAAANLli 60 (66)
T PRK04964 5 CELVRKRYAEIGSGDLGYVPDALGCVLKALNEIAADEALPESVREKAAYAAANLLV 60 (66)
T ss_pred HHHHHHHHHHhcCCccccCcHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHh
Confidence 33344444445555567888888777777654 2357899999988777764
No 412
>smart00582 RPR domain present in proteins, which are involved in regulation of nuclear pre-mRNA.
Probab=21.55 E-value=5.7e+02 Score=22.64 Aligned_cols=61 Identities=13% Similarity=0.108 Sum_probs=37.4
Q ss_pred HhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHhHhh
Q 001442 428 AGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEH 499 (1076)
Q Consensus 428 ~~~l~~~~~~~v~~~a~~aL~~l~~~~~~~~l~~~l~~ll~~l~~~l~~~~~~v~~~al~ai~~l~~~~~~~ 499 (1076)
++.|.. +...++..+.+++... .+...++..+.+.+...++.-|-..+..+..++..+...
T Consensus 6 L~~L~~-s~~~I~~lt~~~~~~~----------~~a~~Iv~~i~~~~~~~~~~~kL~~LYlindIl~n~~~~ 66 (121)
T smart00582 6 LESLNN-SQESIQTLTKWAIEHA----------SHAKEIVELWEKYIKKAPPPRKLPLLYLLDSIVQNSKRK 66 (121)
T ss_pred HHhccc-cHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHhCCccceehhHHhHHHHHHHHhhc
Confidence 344444 4455655555555432 122456777777776666666677888888888877554
No 413
>PF08822 DUF1804: Protein of unknown function (DUF1804); InterPro: IPR014926 This entry is represented by Bacteriophage D3112, Orf24. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=21.06 E-value=7.3e+02 Score=23.67 Aligned_cols=93 Identities=16% Similarity=0.128 Sum_probs=47.5
Q ss_pred HHHHHHHHHhhhchhhhHHHHHHhHhhhhcCCCCHHHHHHHHHHHHHHHHHhhhhhHhhHHhHHHHHHhhccCCChhHHh
Q 001442 824 EILGTLIKTFKAAFLPFFDELSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREAALKYYETYLPFLLEACNDENQDVRQ 903 (1076)
Q Consensus 824 ~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~vr~ 903 (1076)
..+..+.+.+=..|.-.++..+..+.. ..+-++..|...+..|++-+....... ..++|-.-+ ..
T Consensus 62 gg~e~v~~~~l~~f~~Q~~~tmeel~~--~~~~~~~~k~~~LasLaDsf~K~vaas----kr~lPets~---------La 126 (165)
T PF08822_consen 62 GGIEDVARQMLEDFVVQYQATMEELKE--NEDMPPQEKVELLASLADSFSKMVAAS----KRVLPETSE---------LA 126 (165)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhc--ccCCCHHHHHHHHHHHHHHHHHHHHHH----hhcCchHHH---------HH
Confidence 334455555444444334444443321 123367888888888888776654432 233332221 23
Q ss_pred hhhHHHHHHHhhcCCCchHHHHHHHHHH
Q 001442 904 AAVYGLGVCAEFGGSVVKPLVGEALSRL 931 (1076)
Q Consensus 904 ~a~~~lg~l~~~~~~~~~~~~~~il~~L 931 (1076)
.|...+..++....+.+..+++.+++.|
T Consensus 127 vA~~vl~~l~~fv~e~~P~h~~af~eiL 154 (165)
T PF08822_consen 127 VAMEVLELLAAFVQERYPQHLAAFLEIL 154 (165)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 3445566666665555444444444444
No 414
>PF14676 FANCI_S2: FANCI solenoid 2; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=20.57 E-value=6.3e+02 Score=23.99 Aligned_cols=83 Identities=19% Similarity=0.220 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHhhhchhhhHHHHHHhHhhhhcCCCCHHHHHHHHHHHHHHHHHhhhhhHhhHHhHHHHHHhhccCCChh
Q 001442 821 QVGEILGTLIKTFKAAFLPFFDELSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREAALKYYETYLPFLLEACNDENQD 900 (1076)
Q Consensus 821 ~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~ 900 (1076)
...+|+..+++..+-.+..+...+-..+ +++ ..-+.+ .+.+++..+..-+... ...-+.++-.+-+.+-..+..
T Consensus 74 ~~idlL~~lv~~~p~~vle~~~~l~~~l-d~l-~~lp~~---~a~~ll~Al~PLi~~s-~~lrd~lilvLRKamf~r~~~ 147 (158)
T PF14676_consen 74 QYIDLLSELVRKAPLTVLECSSKLKELL-DYL-SFLPGD---VAIGLLRALLPLIKFS-PSLRDSLILVLRKAMFSRELD 147 (158)
T ss_dssp HHHHHHHHHHHH-HHHHS-S-HHHHGGG-GGT-TTS-HH---HHHHHHHHHHHHHTT--HHHHHHHHHHHHHHTT-SSHH
T ss_pred HHHHHHHHHHHHChHHHHHHHHHHHHHH-HHH-HhCCHH---HHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHccccHH
Confidence 4579999999998876655555443322 222 111222 3455555554433221 235567788888888899999
Q ss_pred HHhhhhHHH
Q 001442 901 VRQAAVYGL 909 (1076)
Q Consensus 901 vr~~a~~~l 909 (1076)
.|..|+.|+
T Consensus 148 ~R~~Av~Gf 156 (158)
T PF14676_consen 148 ARQMAVNGF 156 (158)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999998875
No 415
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=20.19 E-value=5.1e+02 Score=27.12 Aligned_cols=101 Identities=13% Similarity=0.159 Sum_probs=64.2
Q ss_pred CChhHHHHHHHHHHHHHhhcH--HHHHHhHH-HHHHHHHhhCCCC---ChhHHHHHHHHHHHhhhhhchhH-Hhhhhhhh
Q 001442 351 PEWQKHHAALIALAQIAEGCA--KVMVKNLE-QVLSMVLNSFRDP---HPRVRWAAINAIGQLSTDLGPDL-QNQFHPQV 423 (1076)
Q Consensus 351 ~~~~~r~aal~~l~~l~~~~~--~~~~~~l~-~i~~~l~~~l~d~---~~~vr~~a~~~l~~l~~~~~~~~-~~~~~~~l 423 (1076)
.....+-.++.++..+..+.. ..+..+.. .++..+....... ++.+|.++...+-.++-.....- ..+....+
T Consensus 122 ~~~~~~ml~lR~l~NlF~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~l 201 (268)
T PF08324_consen 122 SPPANQMLALRLLANLFSHPPGRQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSEL 201 (268)
T ss_dssp SSHHHHHHHHHHHHHHTTSCCCHHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHH
T ss_pred CcHHHHHHHHHHHHHhhCCCccHHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHH
Confidence 455566666666666654322 34445555 5666666655554 89999999998888876654322 12333446
Q ss_pred HHHHHhhccC-CCChhHHHHHHHHHHHhh
Q 001442 424 LPALAGAMDD-FQNPRVQAHAASAVLNFS 451 (1076)
Q Consensus 424 l~~l~~~l~~-~~~~~v~~~a~~aL~~l~ 451 (1076)
+..+.+.+.. ..++++..+++-|+++++
T Consensus 202 l~~i~~~~~~~~~d~Ea~~R~LvAlGtL~ 230 (268)
T PF08324_consen 202 LSSIIEVLSREESDEEALYRLLVALGTLL 230 (268)
T ss_dssp HHHHHHHCHCCHTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccCCHHHHHHHHHHHHHHh
Confidence 6666664332 246888889999999998
Done!