Query 001442
Match_columns 1076
No_of_seqs 338 out of 3164
Neff 10.5
Searched_HMMs 29240
Date Tue Mar 26 17:30:37 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001442.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_741-745//hhsearch_pdb/001442hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fdd_A Transportin-1; heat rep 1.0 1 1 615.4 75.4 791 20-1076 11-851 (852)
2 2bpt_A Importin beta-1 subunit 1.0 1 1 495.6 80.4 765 19-915 1-858 (861)
3 1u6g_C TIP120 protein, CAND1; 1.0 1 1 480.4 68.7 936 17-1048 1-1184(1230)
4 1qgr_A Protein (importin beta 1.0 1 1 479.9 73.0 771 23-917 2-874 (876)
5 1wa5_C Importin alpha RE-expor 1.0 1 1 421.4 67.6 560 19-602 2-687 (960)
6 2x1g_F Cadmus; transport prote 1.0 1 1 388.4 53.2 580 19-684 4-744 (971)
7 2x19_B Importin-13; nuclear tr 1.0 1 1 388.4 61.0 507 19-543 21-653 (963)
8 1u6g_C TIP120 protein, CAND1; 1.0 1 1 370.5 70.3 929 59-1073 9-1155(1230)
9 3m1i_C Exportin-1; heat repeat 1.0 1 1 361.2 65.6 482 19-516 13-642 (1049)
10 1qgr_A Protein (importin beta 1.0 1 1 339.1 70.4 772 68-965 12-875 (876)
No 1
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=1.00 E-value=1 Score=615.36 Aligned_cols=791 Identities=18% Similarity=0.260 Sum_probs=625.7
Q ss_pred CHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHC--CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 92889999999508996898999999988550094389999999980--5999879999999999751558887566789
Q 001442 20 DSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQ--RSPHPEARAMAAVLLRKLLTRDDSFLWPRLS 97 (1076)
Q Consensus 20 ~~~~l~~lL~~~~s~d~~~r~~Ae~~L~~~~~~~p~~~~~~l~~il~--~~~~~~~R~~a~i~Lk~~i~~~~~~~w~~l~ 97 (1076)
+.+++.++|+.++|||+++|++||++|+++++ +|+ +..+|..++. ++.++.+|++|+++|||.+.++ |..++
T Consensus 11 ~~~~l~~~l~~~~s~d~~~r~~Ae~~L~~~~~-~p~-~~~~l~~il~~~~~~~~~vR~~a~~~Lkn~i~~~----w~~~~ 84 (852)
T 4fdd_A 11 GLQQILQLLKESQSPDTTIQRTVQQKLEQLNQ-YPD-FNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAH----FQNFP 84 (852)
T ss_dssp HHHHHHHHHHHHTCSCHHHHHHHHHHHHHHTT-SHH-HHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTTTS----GGGCC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH-CCC-HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHC----CCCCC
T ss_conf 39999999998739498999999999999870-998-8999999985668898679999999999989874----47799
Q ss_pred HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH--
Q ss_conf 868999999998998413226699999999999974216999940169999984029988789999999999999999--
Q 001442 98 LHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLIINFI-- 175 (1076)
Q Consensus 98 ~~~~~~i~~~Ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~~~~~~~r~~al~~L~~l~~~~~-- 175 (1076)
++.+..+|+.+++.+. ++++.+|+.++.+++.|++.+++ +.||++++.+.+.+++++..+|++++.+|+.++...-
T Consensus 85 ~~~~~~ik~~ll~~l~-~~~~~vr~~~a~~i~~ia~~~~~-~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~ 162 (852)
T 4fdd_A 85 NGVTDFIKSECLNNIG-DSSPLIRATVGILITTIASKGEL-QNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEI 162 (852)
T ss_dssp HHHHHHHHHHHHTTTT-CSSHHHHHHHHHHHHHHHHHTTT-TTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999874-99899999999999999986481-356899999999870999899999999999999985787
Q ss_pred ------------------HHHCCCCH-----------------HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf ------------------85089004-----------------8677635999999999998279988999999999998
Q 001442 176 ------------------QCLTSSAD-----------------RDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIEL 220 (1076)
Q Consensus 176 ------------------~~l~~~~~-----------------~~~~~~l~p~il~~l~~~~~~~~~~~~~~~~~~l~~l 220 (1076)
+.+.++.. ...+...++.+++.+...++++++++|..++++|..+
T Consensus 163 ~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l 242 (852)
T 4fdd_A 163 LDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVML 242 (852)
T ss_dssp HHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHH
T ss_pred HCHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf 56343133299999999998567978999999999999986463879988999999999871799778999999999999
Q ss_pred HCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 82386888894999999999973278744569999999999999721025212203544699999999994237899833
Q 001442 221 AGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPL 300 (1076)
Q Consensus 221 ~~~~~~~~~~~~~~i~~~ll~~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~dd~~ 300 (1076)
++..++.+.+|+..+++.++..+.+ .++.+|..|+++|..+++. +...+...+++..++|.++..|.+.++|..
T Consensus 243 ~~~~~~~~~~~l~~l~~~l~~~~~~--~~~~vr~~a~e~l~~l~~~----~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~ 316 (852)
T 4fdd_A 243 LEVRMDRLLPHMHNIVEYMLQRTQD--QDENVALEACEFWLTLAEQ----PICKDVLVRHLPKLIPVLVNGMKYSDIDII 316 (852)
T ss_dssp HHHCHHHHGGGHHHHHHHHHHHHTC--SSHHHHHHHHHHHHHHTTS----TTHHHHHTTTHHHHHHHHHHHTSCCHHHHH
T ss_pred HHHCHHHHHHHHHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHHCC----HHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf 9857798998899999999987069--9689999999999998603----657988788898899999987578676799
Q ss_pred CCCCC-CCCCCC----CCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCHHHHH
Q ss_conf 45788-987554----7777210599999999987499743587987898844698966999999999999821689999
Q 001442 301 WHSAE-TEDEDA----GESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMV 375 (1076)
Q Consensus 301 ~~~~~-~e~~d~----~e~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~ 375 (1076)
|...+ ++|+++ ++++.++++..+++.++...| +.+++.+++.+.+.+++++|+.|++++.++|.+++++++.+.
T Consensus 317 ~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~-~~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~ 395 (852)
T 4fdd_A 317 LLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYR-DELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMI 395 (852)
T ss_dssp HHHC------------CCCCHHHHHHHHHHHHHHHHG-GGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHG
T ss_pred HHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHH
T ss_conf 8669844322245640111699999999999987461-878999999999985599889999999999999863568899
Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCC
Q ss_conf 82999999998307898866899999999996643304377533441599999521589981289889999999640289
Q 001442 376 KNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCT 455 (1076)
Q Consensus 376 ~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~d~~~~~v~~~a~~aL~~l~~~~~ 455 (1076)
++++.+++.+.+.+.|+++.||.+++|++|++++++++.....++..+++.++..+.| +++.||..|++++..+++.++
T Consensus 396 ~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d-~~~~vr~~a~~aL~~l~~~~~ 474 (852)
T 4fdd_A 396 PYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILD-SNKRVQEAACSAFATLEEEAC 474 (852)
T ss_dssp GGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTC-SSHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHHH
T ss_conf 8799999999987179988999999999999998861104789999999999999858-988899999999999999736
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 3333586489999999985058666999999999999998276578--52955679999998301771034668899999
Q 001442 456 PEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQ--KYYDAVMPFLKAILVNATDKSNRMLRAKSMEC 533 (1076)
Q Consensus 456 ~~~l~~~l~~il~~l~~~l~~~~~~v~~~al~ai~~l~~~~~~~~~--~~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~ 533 (1076)
.. +.||++.+++.|...++..+......++.+++.++...++.+. +|++.++|.+...+....+. ...++ .+++|
T Consensus 475 ~~-l~~~l~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~~~l~d~-~~~~~-~~~~~ 551 (852)
T 4fdd_A 475 TE-LVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDE-DKDLF-PLLEC 551 (852)
T ss_dssp GG-GGGGHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHHHHSCTT-CTTHH-HHHHH
T ss_pred HH-HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCC-CHHHH-HHHHH
T ss_conf 76-67679999999999998837479999999999999974243136789999889999998733304-69999-99999
Q ss_pred HHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCC
Q ss_conf 99999873601005639999999999836889999702489999999999880168512136645999986067998333
Q 001442 534 ISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTI 613 (1076)
Q Consensus 534 l~~i~~~~g~~~~~~~~~~ii~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~i~~~ll~~~~~~~~~~~ 613 (1076)
++.++.++| ..
T Consensus 552 l~~i~~~~g---------------------------------------------~~------------------------ 562 (852)
T 4fdd_A 552 LSSVATALQ---------------------------------------------SG------------------------ 562 (852)
T ss_dssp HHHHHHHHG---------------------------------------------GG------------------------
T ss_pred HHHHHHHHH---------------------------------------------HH------------------------
T ss_conf 999999974---------------------------------------------86------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCHHHCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCHHHHH
Q ss_conf 57898754347897431021038912452011598999999999999999311034539878987600015327788999
Q 001442 614 TSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRK 693 (1076)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~k~~A~~~L~~i~~~~~~~~~p~~~~~~~~l~~~l~~~~~~~ir~ 693 (1076)
|.||++.+++.+...+...
T Consensus 563 ------------------------------------------------------~~~~~~~i~~~~~~~l~~~------- 581 (852)
T 4fdd_A 563 ------------------------------------------------------FLPYCEPVYQRCVNLVQKT------- 581 (852)
T ss_dssp ------------------------------------------------------GHHHHHHHHHHHHHHHHHH-------
T ss_pred ------------------------------------------------------HHHHHHHHHHHHHHHHHHH-------
T ss_conf ------------------------------------------------------7988999999999999999-------
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf 99998999999999999808899999799999999999999999700992989999999999999984999999889999
Q 001442 694 AAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVEALHKEPDTEICASMLDSLNECIQISGPLLDEGQVRSI 773 (1076)
Q Consensus 694 ~a~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~~~l~~l~~~i~~~g~~~~~~~~~~~ 773 (1076)
+.. .. ... .
T Consensus 582 --------l~~--------------------~~---------~~~-~--------------------------------- 590 (852)
T 4fdd_A 582 --------LAQ--------------------AM---------LNN-A--------------------------------- 590 (852)
T ss_dssp --------HHH--------------------HH---------HHH-H---------------------------------
T ss_pred --------HHH--------------------HH---------HHH-C---------------------------------
T ss_conf --------999--------------------98---------753-3---------------------------------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH--HHHHHHHHHH
Q ss_conf 99999999988876999999621878885764463454366999999999999999998112205648--8888767532
Q 001442 774 VDEIKQVITASSSRKRERAERAKAEDFDAEESELIKEENEQEEEVFDQVGEILGTLIKTFKAAFLPFF--DELSSYLTPM 851 (1076)
Q Consensus 774 ~~~l~~~L~~~~~~~~~~~~~~~~ed~d~~~~~~~~~~~e~~~~~~~~~~~~l~~l~~~~~~~~~~~~--~~l~~~l~~~ 851 (1076)
..+..++ .+..++..+.++++.+++..|+.+.+++ ..+++.+...
T Consensus 591 ----------------------~~~~~~~-----------~d~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~ 637 (852)
T 4fdd_A 591 ----------------------QPDQYEA-----------PDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQC 637 (852)
T ss_dssp ----------------------CTTTSCC-----------CCTHHHHHHHHHHHHHHHHHGGGGHHHHHTCCHHHHHHHH
T ss_pred ----------------------CCCCCCC-----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf ----------------------8866688-----------7611999999999789998747699883677189999998
Q ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 16999988999999989999777236667538869999996636999467766558997998512988168799999999
Q 001442 852 WGKDKTAEERRIAICIFDDVAEQCREAALKYYETYLPFLLEACNDENQDVRQAAVYGLGVCAEFGGSVVKPLVGEALSRL 931 (1076)
Q Consensus 852 l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~vr~~a~~~lg~l~~~~~~~~~~~~~~il~~L 931 (1076)
+ .++++.+|..++.++++++.+++..+.+|++.++|.+.+.+.++++.+|.+|++++|.++...++.+.||+..+++.|
T Consensus 638 l-~~~~~~vr~~a~~~l~~l~~~~~~~~~~~l~~~lp~l~~~l~~~~~~v~~~a~~alg~i~~~~~~~~~p~~~~il~~L 716 (852)
T 4fdd_A 638 M-QDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYIPMVLHQL 716 (852)
T ss_dssp T-TCSSHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTCCTTSHHHHHHHHHHHHHHHHHHGGGGGGGTHHHHHHH
T ss_pred H-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 3-899844999999999999998168889879999999998769420689999999999999971176787899999999
Q ss_pred HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 985169987882446679899999999985527999--976499999960999885787799999999998405985448
Q 001442 932 NVVIRHPNALQPENLMAYDNAVSALGKICQFHRDSI--DAAQVVPAWLNCLPIKGDLIEAKIVHEQLCSMVERSDSDLLG 1009 (1076)
Q Consensus 932 ~~~l~~~~~~~~~~~~~~~na~~al~~l~~~~~~~~--~~~~~i~~~l~~lp~~~d~~e~~~~~~~l~~l~~~~~~~~~~ 1009 (1076)
.+++.+++. ...+++|++.++||++..+|+.+ +++++++.|+..||..+|.+|+..++.+||.+++.+|+.+++
T Consensus 717 ~~~l~~~~~----~~~~~~~a~~~igrl~~~~~~~~~~~l~~~~~~~~~~l~~~~d~~e~~~a~~~l~~li~~~p~~~~~ 792 (852)
T 4fdd_A 717 VEIINRPNT----PKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPSGVIQ 792 (852)
T ss_dssp HHHHTCSSC----CHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHHHHHCGGGTGG
T ss_pred HHHHCCCCC----CCHHHHHHHHHHHHHHHHCHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCHHHHHH
T ss_conf 998579988----7207788999999999868897675589999999998653666079999999999999869186888
Q ss_pred CCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHC
Q ss_conf 6767545699999998357888888899999999999996189456999984199999999996319
Q 001442 1010 PNHQYLPKIVSVFAEILCGKDLATEQTLSRIVNLLKQLQQTLPPATLASTWSSLQPQQQLALQSILS 1076 (1076)
Q Consensus 1010 ~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~ 1076 (1076)
++..+.. +...+..++.+++..+.+++..+++..|+.+|+++++++||+.|++|++.|+
T Consensus 793 ----~~~~~~~----~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 851 (852)
T 4fdd_A 793 ----DFIFFCD----AVASWINPKDDLRDMFCKILHGFKNQVGDENWRRFSDQFPLPLKERLAAFYG 851 (852)
T ss_dssp ----GHHHHHH----HHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTSC
T ss_pred ----HHHHHHH----HHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHC
T ss_conf ----8999999----9870689978999999999999987677201999987299999999998709
No 2
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=1.00 E-value=1 Score=495.57 Aligned_cols=765 Identities=17% Similarity=0.251 Sum_probs=597.1
Q ss_pred CCHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHCCCCC-------
Q ss_conf 9928899999995-0899689899999998855009438999999998059-998799999999997515588-------
Q 001442 19 PDSAPFETLISHL-MSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQRS-PHPEARAMAAVLLRKLLTRDD------- 89 (1076)
Q Consensus 19 ~~~~~l~~lL~~~-~s~d~~~r~~Ae~~L~~~~~~~p~~~~~~l~~il~~~-~~~~~R~~a~i~Lk~~i~~~~------- 89 (1076)
||..++.++|..+ +|||+++|++|+++|+++.++++++|...|++++.++ .++.+|++|+++||+.+.++|
T Consensus 1 Md~~~l~~~L~~~~~s~d~~~r~~Ae~~L~~~~~~~~~~~~~~l~~il~~~~~~~~vR~~A~~~lk~~i~~~w~~~~~~~ 80 (861)
T 2bpt_A 1 MSTAEFAQLLENSILSPDQNIRLTSETQLKKLSNDNFLQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVKTQQF 80 (861)
T ss_dssp CCHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHHHHHHH
T ss_pred CCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf 98779999999742693979999999999999851999999999999837899867999999998702257574878999
Q ss_pred CCCCCC-CCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCC-CHHHHHHHHHHH
Q ss_conf 875667-898689999999989984132266999999999999742169999401699999840299-887899999999
Q 001442 90 SFLWPR-LSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSD-SVKLQESAFLIF 167 (1076)
Q Consensus 90 ~~~w~~-l~~~~~~~i~~~Ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~~~-~~~~r~~al~~L 167 (1076)
...|.. ++++.+..+|+.|++.+.. ++..+|+.++.+++.|++.++|.+.||++++.|.+.++++ ++..|+.++.++
T Consensus 81 ~~~~~~~l~~~~~~~ik~~ll~~l~~-~~~~vr~~~~~~l~~i~~~~~p~~~w~~ll~~L~~~l~~~~~~~~r~~al~~l 159 (861)
T 2bpt_A 81 AQRWITQVSPEAKNQIKTNALTALVS-IEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLAL 159 (861)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHHTC-SSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTSCHHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 97676629999999999999998779-96379999999999999846764554999999999872689789999999999
Q ss_pred HHHHHH------------------HHHHHCCC--CH------HHHHHH-------------HHHHHHHHHHHHHHCCCHH
Q ss_conf 999999------------------99850890--04------867763-------------5999999999998279988
Q 001442 168 AQLIIN------------------FIQCLTSS--AD------RDRFQD-------------LLPLMMRTLTESLNNGNEA 208 (1076)
Q Consensus 168 ~~l~~~------------------~~~~l~~~--~~------~~~~~~-------------l~p~il~~l~~~~~~~~~~ 208 (1076)
..++.. +...+.++ .. ...+.. ..+.+++.+...+++++++
T Consensus 160 ~~l~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~ 239 (861)
T 2bpt_A 160 GYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIE 239 (861)
T ss_dssp HHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHH
T ss_conf 99997278435678988999999999841579998789999999999999999987067668999999999986599889
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHH-HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCC----------CHHH-CC
Q ss_conf 9999999999988238688889499-9999999973278744569999999999999721025----------2122-03
Q 001442 209 TAQEALELLIELAGTEPRFLRRQLV-DVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERA----------PGMM-RK 276 (1076)
Q Consensus 209 ~~~~~~~~l~~l~~~~~~~~~~~~~-~i~~~ll~~~~~~~~~~~~r~~al~~l~~l~~~~~~~----------~~~~-~~ 276 (1076)
+|..++++|..+++.++..+.+++. .+++.++..+.+ .++.+|..++++|..+++..... |... +.
T Consensus 240 ~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~--~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~ 317 (861)
T 2bpt_A 240 VQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKS--PNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNF 317 (861)
T ss_dssp HHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTC--SSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
T ss_conf 99999999999999988999998899999999998737--7278999999999999987886433321035773256999
Q ss_pred CHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHH
Q ss_conf 54469999999999423789983345788987554777721059999999998749974358798789884469896699
Q 001442 277 LPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKH 356 (1076)
Q Consensus 277 ~~~~~~~l~~~l~~~l~~~~dd~~~~~~~~e~~d~~e~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r 356 (1076)
..+++..++|.++..|.+.+++ +++++++.+..+..+++.++..++ +.+++.+++.+.+.+++.+|+.|
T Consensus 318 ~~~~~~~il~~ll~~l~~~~~d----------~~d~~~~~r~~a~~~L~~l~~~~~-~~~~~~l~~~l~~~l~~~~~~~r 386 (861)
T 2bpt_A 318 ALSSIKDVVPNLLNLLTRQNED----------PEDDDWNVSMSAGACLQLFAQNCG-NHILEPVLEFVEQNITADNWRNR 386 (861)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCC-----------CCCCCHHHHHHHHHHHHHHHHHG-GGGHHHHHHHHHHHTTCSSHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCC----------CCCCCCCHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHCCCCCHHHH
T ss_conf 9999988999999998706653----------012468689999999999998740-86899999999987579972699
Q ss_pred HHHHHHHHHHHHHCH-HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCHHH-HHHHHHHHHHHHHHHCCCC
Q ss_conf 999999999982168-99998299999999830789886689999999999664330437-7533441599999521589
Q 001442 357 HAALIALAQIAEGCA-KVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDL-QNQFHPQVLPALAGAMDDF 434 (1076)
Q Consensus 357 ~aal~~l~~l~~~~~-~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~-~~~~~~~il~~l~~~l~d~ 434 (1076)
++++.++|.+++++. +.+.++++.+++.+.+.+.|+++.||.++++++|+++.++++.+ ...+++.+++.++..+.+
T Consensus 387 ~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~- 465 (861)
T 2bpt_A 387 EAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQD- 465 (861)
T ss_dssp HHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTS-
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCC-
T ss_conf 9999999999859987888998999999999882899599999999999999987354048788899999999997644-
Q ss_pred CCHHHHHHHHHHHHHHHHCCC---CCCCCCCHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 981289889999999640289---33335864899999999850586--6699999999999999827657852955679
Q 001442 435 QNPRVQAHAASAVLNFSENCT---PEILTPYLDGIVSKLLVLLQNGK--QMVQEGALTALASVADSSQEHFQKYYDAVMP 509 (1076)
Q Consensus 435 ~~~~v~~~a~~aL~~l~~~~~---~~~l~~~l~~il~~l~~~l~~~~--~~v~~~al~ai~~l~~~~~~~~~~~~~~i~~ 509 (1076)
+ ++|+..||+++..+++.++ ...+.||++.+++.+...+++.+ ..+|..++.+++.++...+..+.+|+..++|
T Consensus 466 ~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~l~~ 544 (861)
T 2bpt_A 466 H-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASIST 544 (861)
T ss_dssp C-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHH
T ss_pred C-HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf 7-289999999999999862313542468999999999999985758615899999999999999762656999999999
Q ss_pred HHHHHHHCCC-------C----CHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCCC-HHHHHHHH
Q ss_conf 9999983017-------7----1034668899999999998736010056399999999998368899997-02489999
Q 001442 510 FLKAILVNAT-------D----KSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDD-PTTSYMLQ 577 (1076)
Q Consensus 510 ~L~~~l~~~~-------~----~~~~~lr~~a~~~l~~i~~~~g~~~~~~~~~~ii~~l~~~~~~~~~~~~-~~~~~~~~ 577 (1076)
.+...+.... + +....+|..++++++.++..+|. .+.|+.+.+++.++...... +. .++..++.
T Consensus 545 ~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~-~~~~~~~~l~~~l~~~l~~~---~~~~v~~~~~~ 620 (861)
T 2bpt_A 545 FVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPS-SVEPVADMLMGLFFRLLEKK---DSAFIEDDVFY 620 (861)
T ss_dssp HHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGG-GTGGGHHHHHHHHHHHHHST---TGGGTHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHCCC---CCCCHHHHHHH
T ss_conf 999999988753201388556777999999999999999998556-34789999999999997467---88757999999
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCEEEECCHHHHHHHHHHHHH
Q ss_conf 99999988016851213664599998606799833357898754347897431021038912452011598999999999
Q 001442 578 AWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATACNML 657 (1076)
Q Consensus 578 ~~~~l~~~~~~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~k~~A~~~L 657 (1076)
+++.++...|.+|.||++.++|.+++.+.. + + . ..+..|+.++
T Consensus 621 ~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~-~-----------------~--~-----------------~vr~~a~~~l 663 (861)
T 2bpt_A 621 AISALAASLGKGFEKYLETFSPYLLKALNQ-V-----------------D--S-----------------PVSITAVGFI 663 (861)
T ss_dssp HHHHHHHHHGGGGHHHHHHHHHHHHHHHHC-T-----------------T--S-----------------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-C-----------------C--H-----------------HHHHHHHHHH
T ss_conf 999999997660999999999999988655-6-----------------6--7-----------------8999999999
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHCCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 99999931103453987898760001532-77889999999899999999999980889999979999999999999999
Q 001442 658 CCYADELKEGFFPWIDQVAPTLVPLLKFY-FHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVE 736 (1076)
Q Consensus 658 ~~i~~~~~~~~~p~~~~~~~~l~~~l~~~-~~~~ir~~a~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~ 736 (1076)
+.++..++..+.||++.+++.+...+.+. .+..+|..+..+++.++...+. .+.++++.++|.+++
T Consensus 664 ~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~-------------~~~~~l~~~l~~l~~ 730 (861)
T 2bpt_A 664 ADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGA-------------DFIPYLNDIMALCVA 730 (861)
T ss_dssp HHHHHHTGGGGHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGG-------------GGHHHHHHHHHHHHH
T ss_pred HHHHHHHCHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHH
T ss_conf 9999874540311199999999997278655676659999999999998405-------------089999999999999
Q ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 97009929899999999999999849999998899999999999998887699999962187888576446345436699
Q 001442 737 ALHKEPDTEICASMLDSLNECIQISGPLLDEGQVRSIVDEIKQVITASSSRKRERAERAKAEDFDAEESELIKEENEQEE 816 (1076)
Q Consensus 737 ~l~~~~~~~~~~~~l~~l~~~i~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~ed~d~~~~~~~~~~~e~~~ 816 (1076)
.+...... .|+++ .+...
T Consensus 731 ~~~~~~~~-------------------------------------------------------~d~d~-------~~~~~ 748 (861)
T 2bpt_A 731 AQNTKPEN-------------------------------------------------------GTLEA-------LDYQI 748 (861)
T ss_dssp HHTCCCSS-------------------------------------------------------SSHHH-------HHHHH
T ss_pred HHHCCCCC-------------------------------------------------------CCHHH-------HHHHH
T ss_conf 97367899-------------------------------------------------------97588-------99999
Q ss_pred HHHHHHHHHHHHHHHHHH---HCHHHHHHHHHHHHHHHHCCC--C-CHHHHHHHHHHHHHHHHHH-HHHHHHHHH-HHHH
Q ss_conf 999999999999999811---220564888887675321699--9-9889999999899997772-366675388-6999
Q 001442 817 EVFDQVGEILGTLIKTFK---AAFLPFFDELSSYLTPMWGKD--K-TAEERRIAICIFDDVAEQC-REAALKYYE-TYLP 888 (1076)
Q Consensus 817 ~~~~~~~~~l~~l~~~~~---~~~~~~~~~l~~~l~~~l~~~--~-~~~~r~~al~~l~~l~~~~-~~~~~~~~~-~i~~ 888 (1076)
.++..+.++++.++...+ ..+.+++..+++.+...+.+. . +..+|..++.+++.++..+ |..+.+|++ .++|
T Consensus 749 ~vr~~~l~~~~~i~~~l~~~~~~~~~~~~~i~~~l~~~~~d~~~~~~~~vr~~a~~~l~~l~~~~~g~~~~~~~~~~~~~ 828 (861)
T 2bpt_A 749 KVLEAVLDAYVGIVAGLHDKPEALFPYVGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAAMFPDGSIKQFYGQDWVI 828 (861)
T ss_dssp HHHHHHHHHHHHHHHHTTTCHHHHGGGHHHHHHHHHHHHHCHHHHTSHHHHHHHHHHHHHHHHHCTTSTTGGGTTCHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHCHHHH
T ss_conf 99999999999999998267788999999999999998748555786999999999999999882882488987267999
Q ss_pred HHHHHCC---CCCHHHHHHHHHHHHHHHHH
Q ss_conf 9996636---99946776655899799851
Q 001442 889 FLLEACN---DENQDVRQAAVYGLGVCAEF 915 (1076)
Q Consensus 889 ~l~~~l~---~~~~~vr~~a~~~lg~l~~~ 915 (1076)
.+++.+. +.+..++.+|.|++|.+.+.
T Consensus 829 ~ll~~l~~~~~~~~~~~~~~~wa~~~~~~~ 858 (861)
T 2bpt_A 829 DYIKRTRSGQLFSQATKDTARWAREQQKRQ 858 (861)
T ss_dssp HHHHHHHHCSSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 999988535578877899999999999987
No 3
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=1.00 E-value=1 Score=480.40 Aligned_cols=936 Identities=13% Similarity=0.163 Sum_probs=617.9
Q ss_pred CCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC--------CHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 1999288999999950899689899999998855009--------43899999999805999879999999999751558
Q 001442 17 LGPDSAPFETLISHLMSTSNEQRSEAELLFNLCKQQD--------PDSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRD 88 (1076)
Q Consensus 17 ~~~~~~~l~~lL~~~~s~d~~~r~~Ae~~L~~~~~~~--------p~~~~~~l~~il~~~~~~~~R~~a~i~Lk~~i~~~ 88 (1076)
|+.+..++.++|..+.|+|+++|++|+..|....+.. +..++..+++.+. +.++.+|+.|+..|.+....
T Consensus 1 ~~~~~~~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~-d~~~~vR~~A~~~L~~l~~~- 78 (1230)
T 1u6g_C 1 MASASYHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLE-DKNGEVQNLAVKCLGPLVSK- 78 (1230)
T ss_dssp ---CCHHHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTT-CSSHHHHHHHHHHHHHHHTT-
T ss_pred CCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHH-
T ss_conf 9836769999997558987859999999999997416657875679999999999866-99989999999999999975-
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCC--------CCCHHHHHHHHHHC-CCCHHH
Q ss_conf 887566789868999999998998413226699999999999974216999--------94016999998402-998878
Q 001442 89 DSFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPEN--------GWPELLPFMFQCVS-SDSVKL 159 (1076)
Q Consensus 89 ~~~~w~~l~~~~~~~i~~~Ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~--------~w~~ll~~l~~~~~-~~~~~~ 159 (1076)
+++.....+++.|+..+. +++..+|..++.+++.++....+.. .|++++|.|...+. +++..+
T Consensus 79 -------~~~~~~~~i~~~Ll~~l~-d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~ 150 (1230)
T 1u6g_C 79 -------VKEYQVETIVDTLCTNML-SDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSV 150 (1230)
T ss_dssp -------SCHHHHHHHHHHHHHHTT-CSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHH
T ss_pred -------CCHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHH
T ss_conf -------879899999999999866-983889999999999999967974444411788999999999998757884679
Q ss_pred HHHHHHHHHHHHHH---------------HHHHHCCCCH------------------HHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 99999999999999---------------9985089004------------------86776359999999999982799
Q 001442 160 QESAFLIFAQLIIN---------------FIQCLTSSAD------------------RDRFQDLLPLMMRTLTESLNNGN 206 (1076)
Q Consensus 160 r~~al~~L~~l~~~---------------~~~~l~~~~~------------------~~~~~~l~p~il~~l~~~~~~~~ 206 (1076)
|+.++.++..++.. ++..+.++.. ...+..+++.+++.+.. ..+
T Consensus 151 ~~~al~~l~~~~~~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~---~~~ 227 (1230)
T 1u6g_C 151 QLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSK---NDS 227 (1230)
T ss_dssp HHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----CTTHHHHHHHHHHH---TCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCC---CCC
T ss_conf 99999999999998276778879999999999875996899999999999999856899999999999998616---775
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHCCCHHHHHHHHH
Q ss_conf 88999999999998823868888949999999999732787445699999999999997210252122035446999999
Q 001442 207 EATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFA 286 (1076)
Q Consensus 207 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~i~~~ll~~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~l~~ 286 (1076)
...+..+++++..+++..++.+.+|+..+++.++..+.+ .++++|..+++++..+++. .+ ..+.+|++.++|
T Consensus 228 ~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~d--~~~~vR~~a~~~l~~l~~~---~~---~~~~~~l~~li~ 299 (1230)
T 1u6g_C 228 MSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNV--DDDELREYCIQAFESFVRR---CP---KEVYPHVSTIIN 299 (1230)
T ss_dssp SCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSS--CCTTTHHHHHHHHHHHHHC---TT---CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHHHHH---CH---HHHHHHHHHHHH
T ss_conf 568999999999999986898998899999999998668--9778999999999999997---84---877776899999
Q ss_pred HHHHHHCCCCC-----CCCCCC------CCCCCC---------CCCCCCCHHHHHHHHHHHHHHCCC--CCCHHHHHHHH
Q ss_conf 99994237899-----833457------889875---------547777210599999999987499--74358798789
Q 001442 287 ILMSMLLDIED-----DPLWHS------AETEDE---------DAGESSNYSVGQECLDRLAIALGG--NTIVPVASEQL 344 (1076)
Q Consensus 287 ~l~~~l~~~~d-----d~~~~~------~~~e~~---------d~~e~~~~~~a~~~l~~l~~~~~~--~~~~~~l~~~l 344 (1076)
.++..+.+..+ +.+|.. .+++++ ++..|..+..+..+++.++...+. ...++.+++.+
T Consensus 300 ~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~l~~~l 379 (1230)
T 1u6g_C 300 ICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPAL 379 (1230)
T ss_dssp HHTTCCCCC------------------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHH
T ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_conf 99998278998887644110112233446530110013666455567799999999999999746667999999998999
Q ss_pred HHHHCCCCHHHHHHHHHHHHHHHHH-------------------CHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 8844698966999999999999821-------------------689999829999999983078988668999999999
Q 001442 345 PAYLAAPEWQKHHAALIALAQIAEG-------------------CAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIG 405 (1076)
Q Consensus 345 ~~~l~~~~~~~r~aal~~l~~l~~~-------------------~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~ 405 (1076)
...+.+.++.+|.+++.+++.+... +...+..+++.+++.+.+.+.|+++.+|.+++.+++
T Consensus 380 ~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~ 459 (1230)
T 1u6g_C 380 ISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLT 459 (1230)
T ss_dssp HSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 98717986579999999999999972424343467520135645599999874699999999861377879999999999
Q ss_pred HHHHHHCHHHHHHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHH
Q ss_conf 96643304377533441599999521589981--2898899999996402893333586489999999985058666999
Q 001442 406 QLSTDLGPDLQNQFHPQVLPALAGAMDDFQNP--RVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQE 483 (1076)
Q Consensus 406 ~l~~~~~~~~~~~~~~~il~~l~~~l~d~~~~--~v~~~a~~aL~~l~~~~~~~~l~~~l~~il~~l~~~l~~~~~~v~~ 483 (1076)
.++...+..+ .++++.+++.++..+.+ +.+ .++..++.++..+++..+++.+.||++.+++.++..+++.+..++.
T Consensus 460 ~l~~~~~~~l-~~~l~~ll~~l~~~L~d-~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l~d~~~~v~~ 537 (1230)
T 1u6g_C 460 ELVNVLPGAL-TQHIPVLVPGIIFSLND-KSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITS 537 (1230)
T ss_dssp HHHHHSTTTT-GGGHHHHHHHHHHHTTC-SSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCSSHHHHH
T ss_pred HHHHHCHHHH-HHHHHHHHHHHHHHHCC-CCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf 9999761105-77799999999999748-788516899999999999983898878867999999999997142468999
Q ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
Q ss_conf 999999999998276-------5785295567999999830177103466889999999999873601005639999999
Q 001442 484 GALTALASVADSSQE-------HFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEV 556 (1076)
Q Consensus 484 ~al~ai~~l~~~~~~-------~~~~~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~g~~~~~~~~~~ii~~ 556 (1076)
.++.+++.++...+. .+.||++.++|.+...+... +.+..+|..++.|++.++...| +.+.++.+.+++.
T Consensus 538 ~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~--d~~~~vr~~a~~~lg~L~~~~g-~~~~~~~~~~l~~ 614 (1230)
T 1u6g_C 538 EALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAA--DIDQEVKERAISCMGQIICNLG-DNLGSDLPNTLQI 614 (1230)
T ss_dssp HHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHHHHSCS--SSCHHHHHHHHHHHHHHHHHTG-GGCCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHH
T ss_conf 999999999987167555653232789999999999987326--9988999999999999999827-0324438899999
Q ss_pred HHHHHCCCC-------------------------------------CCCCHHHHHHHHHHHHHHHHHCC-----------
Q ss_conf 999836889-------------------------------------99970248999999999988016-----------
Q 001442 557 LMSLQGSQM-------------------------------------ETDDPTTSYMLQAWARLCKCLGQ----------- 588 (1076)
Q Consensus 557 l~~~~~~~~-------------------------------------~~~~~~~~~~~~~~~~l~~~~~~----------- 588 (1076)
+........ +.+...|..++.+++.++...+.
T Consensus 615 L~~~l~~e~~r~~~~~al~~i~~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~r~~a~~al~~l~~~~~~~~~~~~v~~~l 694 (1230)
T 1u6g_C 615 FLERLKNEITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVL 694 (1230)
T ss_dssp HHHHTTSSSHHHHHHHHHHHHTTCSSCCCCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHCCTTCCHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
T ss_conf 99884453059999999999981856443688899999999999986788899999999999996043338989999999
Q ss_pred -------------------------------CCCCCHHHHHHHHHHHCCCCC--CCC----------CCCCCC---C-C-
Q ss_conf -------------------------------851213664599998606799--833----------357898---7-5-
Q 001442 589 -------------------------------DFLPYMSVVMPPLLQSAQLKP--DVT----------ITSADS---D-N- 620 (1076)
Q Consensus 589 -------------------------------~~~~~l~~i~~~ll~~~~~~~--~~~----------~~~~~~---~-~- 620 (1076)
.+.++.+.+++.++..+.... +.. ...... . .
T Consensus 695 ~~ll~ll~~~D~~~~~~~~~~L~~l~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~ 774 (1230)
T 1u6g_C 695 DELPPLISESDMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPLLQGGALSAMLDFFQALVVTGTNNLGYMD 774 (1230)
T ss_dssp TTCGGGSCTTCHHHHHHHHHHHHHHTTSCGGGGGGTTTTTHHHHHHHHTCTTCCHHHHHHHHHHHHHHHTTCCTTCSHHH
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHH
T ss_conf 99876357541878999999999998849126777677689999999758621057899999999999834788788999
Q ss_pred -------CCC-CCCC-CCCC---HH-----------------HCCCCEEEECC--HHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf -------434-7897-4310---21-----------------03891245201--1598999999999999999311034
Q 001442 621 -------EIE-DSDD-DSME---TI-----------------TLGDKRIGIKT--SVLEEKATACNMLCCYADELKEGFF 669 (1076)
Q Consensus 621 -------~~~-~~~~-~~~~---~~-----------------~~~~~~~~v~~--~~~~~k~~A~~~L~~i~~~~~~~~~ 669 (1076)
... +.++ .+.. .. ........+++ .....+..++.+++.+... ..+.
T Consensus 775 ll~~l~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~--~~~~ 852 (1230)
T 1u6g_C 775 LLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDVKNSRSTDSIRLLALLSLGEVGHH--IDLS 852 (1230)
T ss_dssp HHHHHSTTTTTC----CCHHHHHHHHHHHHHHHHHSCCCSHHHHTTTTTTTTTTTCCHHHHHHHHHHHHHHHHH--SCCC
T ss_pred HHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCC--CCCC
T ss_conf 99998500357887320001048999999999984656668999999998378876679999999999986156--7876
Q ss_pred CCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf 53987898760001532778899999998999999999999808899999799999999999999999700992989999
Q 001442 670 PWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVEALHKEPDTEICAS 749 (1076)
Q Consensus 670 p~~~~~~~~l~~~l~~~~~~~ir~~a~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~~ 749 (1076)
++ +++.+.+.+.+.+. ++.||.+|+.+++.+... .++.++|.+++.+..+ ++.+..
T Consensus 853 ~~-~~l~~~~~~~l~~~-~~~Vr~aAa~aLg~l~~~--------------------~~~~~lp~ll~~l~~~--~~~~~~ 908 (1230)
T 1u6g_C 853 GQ-LELKSVILEAFSSP-SEEVKSAASYALGSISVG--------------------NLPEYLPFVLQEITSQ--PKRQYL 908 (1230)
T ss_dssp SC-THHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHH--------------------THHHHHHHHHHHHHSC--GGGHHH
T ss_pred CC-CCHHHHHHHHHCCC-CHHHHHHHHHHHHHHHCC--------------------CHHHHHHHHHHHHHCC--CHHHHH
T ss_conf 56-41899999984799-778999999996877526--------------------9998899999987266--032498
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999998499999988999999999999988876999999621878885764463454366999999999999999
Q 001442 750 MLDSLNECIQISGPLLDEGQVRSIVDEIKQVITASSSRKRERAERAKAEDFDAEESELIKEENEQEEEVFDQVGEILGTL 829 (1076)
Q Consensus 750 ~l~~l~~~i~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~ed~d~~~~~~~~~~~e~~~~~~~~~~~~l~~l 829 (1076)
.+.++.+++...+. +.+.++...++..|..... + .++.++..+++|+|.+
T Consensus 909 ~l~al~e~i~~~~~----~~~~~~~~~i~~~L~~~~~------------~--------------~~~~~r~~~a~~lg~l 958 (1230)
T 1u6g_C 909 LLHSLKEIISSASV----VGLKPYVENIWALLLKHCE------------C--------------AEEGTRNVVAECLGKL 958 (1230)
T ss_dssp HHHHHHHHHHSSCS----TTTHHHHHHHHHHHTTCCC------------C--------------SSTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCH----HHHHHHHHHHHHHHHHHHC------------C--------------CCHHHHHHHHHHHHHH
T ss_conf 89999999823876----6677669999999998733------------8--------------3044689999887566
Q ss_pred HHHHHHCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 99811220564888887675321699998899999998999977723666753886999999663699946776655899
Q 001442 830 IKTFKAAFLPFFDELSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREAALKYYETYLPFLLEACNDENQDVRQAAVYGL 909 (1076)
Q Consensus 830 ~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l 909 (1076)
++..+.. ++|.+...+ .+.++..|..++.+++.++..++..+.+|++.+++.++..++|+++.||++|++++
T Consensus 959 ~~~~~~~-------l~p~l~~~l-~~~~~~~R~~~~~~l~~~~~~~~~~~~~~l~~~~~~ll~~l~d~~~~vr~~a~~~l 1030 (1230)
T 1u6g_C 959 TLIDPET-------LLPRLKGYL-ISGSSYARSSVVTAVKFTISDHPQPIDPLLKNCIGDFLKTLEDPDLNVRRVALVTF 1030 (1230)
T ss_dssp HHSSGGG-------THHHHTTTS-SSSCHHHHHHHHHHTGGGCCSSCCTHHHHHHHHSTTTHHHHSSSSTHHHHHHHHHH
T ss_pred HCCCHHH-------HHHHHHHHH-CCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf 5067688-------889999985-69978899999999999970682335898999899999864898587999999999
Q ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHCCCCC------------CCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 7998512988168799999999985169987------------8824466798999999999855279999764999999
Q 001442 910 GVCAEFGGSVVKPLVGEALSRLNVVIRHPNA------------LQPENLMAYDNAVSALGKICQFHRDSIDAAQVVPAWL 977 (1076)
Q Consensus 910 g~l~~~~~~~~~~~~~~il~~L~~~l~~~~~------------~~~~~~~~~~na~~al~~l~~~~~~~~~~~~~i~~~l 977 (1076)
|.++.+.++.+.++++.+++.|++.+..++. +.+++..+|+||..|+++++.++.+.+++.++++.|+
T Consensus 1031 ~~~~~~~~~~~~~~l~~~lp~l~~~~~~~~~~~~~v~~gp~k~~vd~~l~~rk~a~~~~~~ll~~~~~~i~~~~~~~~~~ 1110 (1230)
T 1u6g_C 1031 NSAAHNKPSLIRDLLDTVLPHLYNETKVRKELIREVEMGPFKHTVDDGLDIRKAAFECMYTLLDSCLDRLDIFEFLNHVE 1110 (1230)
T ss_dssp HHHHHHCGGGTGGGHHHHHHHHHHTTSCCGGGEEEEEETTEEEEEETHHHHHHHHHHHHHHHHHSSCSSSCHHHHHHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHHHHHHHHCCCHHHHEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_conf 99984285768977988989999883026876013305896023677489999999999999998887478999999998
Q ss_pred HHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCC---CCC------CHHHHHHHHHHHHHHH
Q ss_conf 6099988578779999999999840598544867675456999999983578---888------8889999999999999
Q 001442 978 NCLPIKGDLIEAKIVHEQLCSMVERSDSDLLGPNHQYLPKIVSVFAEILCGK---DLA------TEQTLSRIVNLLKQLQ 1048 (1076)
Q Consensus 978 ~~lp~~~d~~e~~~~~~~l~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~---~~~------~~~~~~~~~~~l~~~~ 1048 (1076)
..||. |.+.+..+|..+.+|++.+|+.+.+ +++++++.+..++..+ +.+ ..|....+.+.+..+.
T Consensus 1111 ~gl~d--~~di~~~~~~~l~~l~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~qe~e~~~e~~r~~~r~~~~l~ 1184 (1230)
T 1u6g_C 1111 DGLKD--HYDIKMLTFLMLVRLSTLCPSAVLQ----RLDRLVEPLRATCTTKVKANSVKQEFEKQDELKRSAMRAVAALL 1184 (1230)
T ss_dssp HTTSS--CHHHHHHHHHHHHHHHHSCCHHHHT----TTTTTHHHHHHHHHCCCCTTSCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCC--HHHHHHHHHHHHHHHHHCCHHHHHH----HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 04676--6889999999999998408798999----99999999999984114634365248899999999999999998
No 4
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=1.00 E-value=1 Score=479.95 Aligned_cols=771 Identities=17% Similarity=0.236 Sum_probs=547.3
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHCCCCC-------CCCCC
Q ss_conf 8999999950899689899999998855009438999999998059-998799999999997515588-------87566
Q 001442 23 PFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQRS-PHPEARAMAAVLLRKLLTRDD-------SFLWP 94 (1076)
Q Consensus 23 ~l~~lL~~~~s~d~~~r~~Ae~~L~~~~~~~p~~~~~~l~~il~~~-~~~~~R~~a~i~Lk~~i~~~~-------~~~w~ 94 (1076)
++.++|++++|+|+++|++|+++|+++.++++..+...|++++.++ .++.+|++|+++||+.+...+ ...|.
T Consensus 2 ~l~~~L~~~~s~d~~~r~~A~~~L~~~~~~~~~~~~~~L~~~l~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~w~ 81 (876)
T 1qgr_A 2 ELITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWL 81 (876)
T ss_dssp CHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHH
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHC
T ss_conf 68999997629898999999999999871680469999999985789987999999999987605543476789986440
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHH
Q ss_conf 7898689999999989984132266999999999999742169999401699999840299--88789999999999999
Q 001442 95 RLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSD--SVKLQESAFLIFAQLII 172 (1076)
Q Consensus 95 ~l~~~~~~~i~~~Ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~~~--~~~~r~~al~~L~~l~~ 172 (1076)
.++++.+..+|+.+++.+.. ++..+ +.++.+++.|++.++|.+.||++++.+.+.+.++ ++.+|+.++.++..++.
T Consensus 82 ~l~~~~~~~ik~~ll~~l~~-~~~~~-~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~ 159 (876)
T 1qgr_A 82 AIDANARREVKNYVLHTLGT-ETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQ 159 (876)
T ss_dssp TSCHHHHHHHHHHHHHHTTT-CCSSS-CHHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHCC-CCHHH-HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
T ss_conf 69999999999999998679-94788-99999999999846762256889999999870889879999999999999987
Q ss_pred H----------------HHHHHCCCC--HH------HHHHHH-------------HHHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf 9----------------998508900--48------677635-------------9999999999982799889999999
Q 001442 173 N----------------FIQCLTSSA--DR------DRFQDL-------------LPLMMRTLTESLNNGNEATAQEALE 215 (1076)
Q Consensus 173 ~----------------~~~~l~~~~--~~------~~~~~l-------------~p~il~~l~~~~~~~~~~~~~~~~~ 215 (1076)
. +...+.+++ .. ..+..+ .+.+++.+...+.+.+.+++..+++
T Consensus 160 ~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~ 239 (876)
T 1qgr_A 160 DIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQ 239 (876)
T ss_dssp HSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHH
T ss_pred HCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
T ss_conf 45876678679999999998616799988999999999999999999988717899999999998717998899999999
Q ss_pred HHHHHHCCCCHHHHHHHH-HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCC-------------CC--HHHCCCHH
Q ss_conf 999988238688889499-999999997327874456999999999999972102-------------52--12203544
Q 001442 216 LLIELAGTEPRFLRRQLV-DVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARER-------------AP--GMMRKLPQ 279 (1076)
Q Consensus 216 ~l~~l~~~~~~~~~~~~~-~i~~~ll~~~~~~~~~~~~r~~al~~l~~l~~~~~~-------------~~--~~~~~~~~ 279 (1076)
+|..+++.+++.+.+++. .+++.++.... +.++.+|..++++|..+++.... .| .......+
T Consensus 240 ~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (876)
T 1qgr_A 240 NLVKIMSLYYQYMETYMGPALFAITIEAMK--SDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKG 317 (876)
T ss_dssp HHHHHHHHSGGGCHHHHTTTHHHHHHHHHT--CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH
T ss_conf 999999986999998877899999999963--873499999999999998878767665100112477754201899999
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf 69999999999423789983345788987554777721059999999998749974358798789884469896699999
Q 001442 280 FINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAA 359 (1076)
Q Consensus 280 ~~~~l~~~l~~~l~~~~dd~~~~~~~~e~~d~~e~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aa 359 (1076)
++..+++.++..+...++| +++++++.+.++..+++.++...+ +.+++.+++.+...+++++|+.|+++
T Consensus 318 ~~~~ll~~ll~~l~~~~~d----------~~~~~~~~r~~a~~~l~~l~~~~~-~~~~~~~l~~l~~~l~~~~~~~r~~a 386 (876)
T 1qgr_A 318 ALQYLVPILTQTLTKQDEN----------DDDDDWNPCKAAGVCLMLLATCCE-DDIVPHVLPFIKEHIKNPDWRYRDAA 386 (876)
T ss_dssp HHHHHHHHHHHHTTCCCSS----------CCTTCCCHHHHHHHHHHHHHHHHG-GGGHHHHHHHHHHHTTCSSHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCC----------CCCCCCHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf 8988707999875313344----------454521799999999999998775-86699999999988469982899999
Q ss_pred HHHHHHHHHHCH-HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCHHH-HHHHHHHHHHHHHHHCCCCCCH
Q ss_conf 999999982168-99998299999999830789886689999999999664330437-7533441599999521589981
Q 001442 360 LIALAQIAEGCA-KVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDL-QNQFHPQVLPALAGAMDDFQNP 437 (1076)
Q Consensus 360 l~~l~~l~~~~~-~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~-~~~~~~~il~~l~~~l~d~~~~ 437 (1076)
+.+++.+++++. +.+.++++.+++.++..+.|+++.||.+|+++++++++++++.+ ..++++.+++.++..+.+ + +
T Consensus 387 ~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~-~-~ 464 (876)
T 1qgr_A 387 VMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSA-E-P 464 (876)
T ss_dssp HHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTS-C-H
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHCC-C-H
T ss_conf 9999999748877789999999999999986799789999999999999985720114477799999999998758-8-8
Q ss_pred HHHHHHHHHHHHHHHCCC-------------CCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 289889999999640289-------------3333586489999999985058---666999999999999998276578
Q 001442 438 RVQAHAASAVLNFSENCT-------------PEILTPYLDGIVSKLLVLLQNG---KQMVQEGALTALASVADSSQEHFQ 501 (1076)
Q Consensus 438 ~v~~~a~~aL~~l~~~~~-------------~~~l~~~l~~il~~l~~~l~~~---~~~v~~~al~ai~~l~~~~~~~~~ 501 (1076)
+|+..+++++..+++.++ .+.+.||++.+++.|...+... +..+|..++.+++.++...+..+.
T Consensus 465 ~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~ 544 (876)
T 1qgr_A 465 RVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCY 544 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCHHHH
T ss_conf 89999999999999985020123444455540321576999999999997276742046999999999999997743118
Q ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCCC-----HHHHHHH
Q ss_conf 52955679999998301771034668899999999998736010056399999999998368899997-----0248999
Q 001442 502 KYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDD-----PTTSYML 576 (1076)
Q Consensus 502 ~~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~g~~~~~~~~~~ii~~l~~~~~~~~~~~~-----~~~~~~~ 576 (1076)
+|+..+++.+...+..... . .+.....++ .++..++
T Consensus 545 ~~~~~l~~~l~~~l~~~~~--------------------~-------------------~~~~~~~~d~~~~~~~~~~~~ 585 (876)
T 1qgr_A 545 PAVQKTTLVIMERLQQVLQ--------------------M-------------------ESHIQSTSDRIQFNDLQSLLC 585 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHT--------------------T-------------------TTSCCSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH--------------------H-------------------HHCCCCHHHHHHHHHHHHHHH
T ss_conf 9999999999999999998--------------------8-------------------712488635999999999999
Q ss_pred HHHHHHHHHHC-CCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCEEEECCHHHHHHHHHHH
Q ss_conf 99999998801-68512136645999986067998333578987543478974310210389124520115989999999
Q 001442 577 QAWARLCKCLG-QDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATACN 655 (1076)
Q Consensus 577 ~~~~~l~~~~~-~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~k~~A~~ 655 (1076)
.+++.++..+| ..+.||++.+++.+++.+....+ . . ..++.++.
T Consensus 586 ~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~---------------------------~-----~---~v~~~a~~ 630 (876)
T 1qgr_A 586 ATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAG---------------------------S-----G---GVQEDALM 630 (876)
T ss_dssp HHHHHHHTTSCHHHHHTTHHHHHHHHHHHC--------------------------------C-----C---HHHHHHHH
T ss_pred HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCC---------------------------C-----C---CCCHHHHH
T ss_conf 99999999828542057899999999999985368---------------------------8-----8---85089999
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 99999999311034539878987600015327788999999989999999999998088999997999999999999999
Q 001442 656 MLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALV 735 (1076)
Q Consensus 656 ~L~~i~~~~~~~~~p~~~~~~~~l~~~l~~~~~~~ir~~a~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l~ 735 (1076)
+++.++..++..|.||++.+++.+.+.+.+..++.+|..++.+++.++...+. ...+++..+++.++
T Consensus 631 ~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~-------------~~~~~~~~i~~~l~ 697 (876)
T 1qgr_A 631 AVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQS-------------NIIPFCDEVMQLLL 697 (876)
T ss_dssp HHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGG-------------GGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHH
T ss_conf 99999999876099999999999999875865087999999999999998878-------------54645999999999
Q ss_pred HHHCC-CCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q ss_conf 99700-99298999999999999998499999988999999999999988876999999621878885764463454366
Q 001442 736 EALHK-EPDTEICASMLDSLNECIQISGPLLDEGQVRSIVDEIKQVITASSSRKRERAERAKAEDFDAEESELIKEENEQ 814 (1076)
Q Consensus 736 ~~l~~-~~~~~~~~~~l~~l~~~i~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~ed~d~~~~~~~~~~~e~ 814 (1076)
+.+.. +.+.+++..++.++..+...+|.. +.++++.+++.+...... ..+..|++. .+.
T Consensus 698 ~~l~~~~~~~~~~~~~~~~l~~i~~~~g~~-----~~~~l~~~~~~l~~~~~~--------~~~~~d~~~-------~~~ 757 (876)
T 1qgr_A 698 ENLGNENVHRSVKPQILSVFGDIALAIGGE-----FKKYLEVVLNTLQQASQA--------QVDKSDYDM-------VDY 757 (876)
T ss_dssp HHHTCTTSCGGGHHHHHHHHHHHHHHHGGG-----GGGGHHHHHHHHHHHHTC--------CCCTTCHHH-------HHH
T ss_pred HHHCCCCCCHHHHHHHHHHHHHHHHHHCHH-----HHHHHHHHHHHHHHHHHC--------CCCCCCHHH-------HHH
T ss_conf 974871233876399999999999970352-----799999999999999855--------589997588-------999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH----------CHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHHHHHHH-HHHHH
Q ss_conf 999999999999999998112----------205648888876753216999-988999999989999777236-66753
Q 001442 815 EEEVFDQVGEILGTLIKTFKA----------AFLPFFDELSSYLTPMWGKDK-TAEERRIAICIFDDVAEQCRE-AALKY 882 (1076)
Q Consensus 815 ~~~~~~~~~~~l~~l~~~~~~----------~~~~~~~~l~~~l~~~l~~~~-~~~~r~~al~~l~~l~~~~~~-~~~~~ 882 (1076)
...++..+.++++.+++..+. .+.+|+..+++.+........ +..+|..++.++++++++.|. .+.+|
T Consensus 758 ~~~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 837 (876)
T 1qgr_A 758 LNELRESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFILSFIDHIAGDEDHTDGVVACAAGLIGDLCTAFGKDVLKLV 837 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCSSSSCCGGGGGSGGGHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHCTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_conf 99999999999999999974575555543889999999999999998658888889999999999999988284889999
Q ss_pred -HHHHHHHHHH-HCCCCCHHHHHHHHHHHHHHHHHCC
Q ss_conf -8869999996-6369994677665589979985129
Q 001442 883 -YETYLPFLLE-ACNDENQDVRQAAVYGLGVCAEFGG 917 (1076)
Q Consensus 883 -~~~i~~~l~~-~l~~~~~~vr~~a~~~lg~l~~~~~ 917 (1076)
.+.+++.++. ++.++++.+|++|+|++|.+++..+
T Consensus 838 ~~~~~i~~ll~~~l~~~~~~~r~~a~~a~~~~~~~~~ 874 (876)
T 1qgr_A 838 EARPMIHELLTEGRRSKTNKAKTLARWATKELRKLKN 874 (876)
T ss_dssp HTSHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHT
T ss_pred HHCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 7048999999987546887689999999999997534
No 5
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=1.00 E-value=1 Score=421.41 Aligned_cols=560 Identities=13% Similarity=0.189 Sum_probs=433.9
Q ss_pred CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHHCCCCCCCCCC---
Q ss_conf 9928899999995089968989999999885500943899999999805-999879999999999751558887566---
Q 001442 19 PDSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQR-SPHPEARAMAAVLLRKLLTRDDSFLWP--- 94 (1076)
Q Consensus 19 ~~~~~l~~lL~~~~s~d~~~r~~Ae~~L~~~~~~~p~~~~~~l~~il~~-~~~~~~R~~a~i~Lk~~i~~~~~~~w~--- 94 (1076)
.|.+++.++|.+++|||+++| ||++|+++++ +|+ |...|++++.+ +.+..+|++|+++|||.+.++ |.
T Consensus 2 ~d~~~l~~~L~~~~spd~~~r--Ae~~L~~~~~-~p~-~~~~L~~il~~~~~~~~vR~~A~i~lkn~i~~~----w~~~~ 73 (960)
T 1wa5_C 2 SDLETVAKFLAESVIASTAKT--SERNLRQLET-QDG-FGLTLLHVIASTNLPLSTRLAGALFFKNFIKRK----WVDEN 73 (960)
T ss_dssp CHHHHHHHHHHHTTSGGGHHH--HHHHHHHHHT-STT-HHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHH----SBCSS
T ss_pred CCHHHHHHHHHHHCCCCHHHH--HHHHHHHHHC-CCC-HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC----CCCCC
T ss_conf 759999999997659987899--9999998555-998-899999998657988889999999999999854----88765
Q ss_pred ---CCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf ---78986899999999899841322669999999999997421699994016999998402998878999999999999
Q 001442 95 ---RLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLI 171 (1076)
Q Consensus 95 ---~l~~~~~~~i~~~Ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~~~~~~~r~~al~~L~~l~ 171 (1076)
.++++.|..||+.+++.+..+ ++.+|++++.+++.|+++++| +.||++++.|.+.+++++...+++++.++..++
T Consensus 74 ~~~~l~~~~k~~ik~~ll~~l~~~-~~~ir~~l~~~ia~ia~~d~p-~~Wp~ll~~L~~~l~s~~~~~~~~aL~~l~~i~ 151 (960)
T 1wa5_C 74 GNHLLPANNVELIKKEIVPLMISL-PNNLQVQIGEAISSIADSDFP-DRWPTLLSDLASRLSNDDMVTNKGVLTVAHSIF 151 (960)
T ss_dssp SCBSSCHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHHST-TTCTTHHHHHHTTCCSSCTTHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 678899899999999999999808-799999999999999986171-301579999999847898899999999999999
Q ss_pred HHH---------------------------H----HHHCCCCHH---------------HHH------------HHHHHH
Q ss_conf 999---------------------------9----850890048---------------677------------635999
Q 001442 172 INF---------------------------I----QCLTSSADR---------------DRF------------QDLLPL 193 (1076)
Q Consensus 172 ~~~---------------------------~----~~l~~~~~~---------------~~~------------~~l~p~ 193 (1076)
..+ + +.+.+.... +.+ ...++.
T Consensus 152 ~~~~~~~~~~~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~~~~~~ 231 (960)
T 1wa5_C 152 KRWRPLFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNIQV 231 (960)
T ss_dssp GGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHTHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 99887614847789999999998999999999999998735798799999999999999999998625655999998999
Q ss_pred HHHHHHHHHHC------CC---------HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHC---CCCCCHHHHHH
Q ss_conf 99999999827------99---------88999999999998823868888949999999999732---78744569999
Q 001442 194 MMRTLTESLNN------GN---------EATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAE---AESLEEGTRHL 255 (1076)
Q Consensus 194 il~~l~~~~~~------~~---------~~~~~~~~~~l~~l~~~~~~~~~~~~~~i~~~ll~~~~---~~~~~~~~r~~ 255 (1076)
+++.+.+.+.. .+ +.+++.++++|..+.+.+++.|.+|++.+++.++..+. +...++.++..
T Consensus 232 ~~~~~~~~l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 311 (960)
T 1wa5_C 232 GMGIFHKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSISNQPKYDILVSK 311 (960)
T ss_dssp HHHHHHHHHSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCTTSHHHHHH
T ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH
T ss_conf 99999999768998555785533132799999999999999999989999999999999999999843777672899999
Q ss_pred HHHHHHHHHHHHCCCCHHHCCC--HHHHHHHH-HHHHHHHCCCCC-CCCCCCCCCC-----CCCCCCCCCHHHHHHHHHH
Q ss_conf 9999999997210252122035--44699999-999994237899-8334578898-----7554777721059999999
Q 001442 256 AIEFVITLAEARERAPGMMRKL--PQFINRLF-AILMSMLLDIED-DPLWHSAETE-----DEDAGESSNYSVGQECLDR 326 (1076)
Q Consensus 256 al~~l~~l~~~~~~~~~~~~~~--~~~~~~l~-~~l~~~l~~~~d-d~~~~~~~~e-----~~d~~e~~~~~~a~~~l~~ 326 (1076)
+++||.++++.+. ....+ .+++..++ +.++..|...++ ...|..+++| .++++.++.+.+|..+++.
T Consensus 312 al~fl~~~~~~~~----~~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~ 387 (960)
T 1wa5_C 312 SLSFLTAVTRIPK----YFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKE 387 (960)
T ss_dssp HHHHHHHHHTSHH----HHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHH
T ss_pred HHHHHHHHHCCHH----HHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHCCCCCCCCCCHHHHHHHHHH
T ss_conf 9999999968676----899876851899999999687348888789988449999998635755123718899999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHC------CCCHHHHHHHHHHHHHHHHH---CHHHHHH-----HHHHH-HHHHHHHCCC
Q ss_conf 99874997435879878988446------98966999999999999821---6899998-----29999-9999830789
Q 001442 327 LAIALGGNTIVPVASEQLPAYLA------APEWQKHHAALIALAQIAEG---CAKVMVK-----NLEQV-LSMVLNSFRD 391 (1076)
Q Consensus 327 l~~~~~~~~~~~~l~~~l~~~l~------~~~~~~r~aal~~l~~l~~~---~~~~~~~-----~l~~i-~~~l~~~l~d 391 (1076)
++..++ +.+++.+++++.+.++ +.+|+.|++|++++|.++++ +...... .+..+ ...+.+.+.|
T Consensus 388 l~~~~~-~~v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~ 466 (960)
T 1wa5_C 388 LKEKNE-VLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTS 466 (960)
T ss_dssp HHHHCH-HHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHC
T ss_pred HHHHCC-HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
T ss_conf 999701-3278999999999998736696121799999999999999874125677412344356999999973787449
Q ss_pred C---CHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCC----------CCCC
Q ss_conf 8---86689999999999664330437753344159999952158998128988999999964028----------9333
Q 001442 392 P---HPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENC----------TPEI 458 (1076)
Q Consensus 392 ~---~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~d~~~~~v~~~a~~aL~~l~~~~----------~~~~ 458 (1076)
+ +|.||.+++|++|++++++. .+++..+++.+++++.+ +++.|+.+||.||..|++.. ..+.
T Consensus 467 ~~~~~p~vr~~a~~~lg~~~~~~~----~~~l~~~l~~l~~~L~d-~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~ 541 (960)
T 1wa5_C 467 NNIPHIILRVDAIKYIYTFRNQLT----KAQLIELMPILATFLQT-DEYVVYTYAAITIEKILTIRESNTSPAFIFHKED 541 (960)
T ss_dssp SSCSCHHHHHHHHHHHHHTGGGSC----HHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGG
T ss_pred CCCCCCEEHHHHHHHHHHHHHHCC----HHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHH
T ss_conf 988883303989999999886589----99999999999998489-9721999999999999844364446654435987
Q ss_pred CCCCHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCHHHHHHHHHHH
Q ss_conf 35864899999999850586-----6699999999999999827657852955679999998301-77103466889999
Q 001442 459 LTPYLDGIVSKLLVLLQNGK-----QMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNA-TDKSNRMLRAKSME 532 (1076)
Q Consensus 459 l~~~l~~il~~l~~~l~~~~-----~~v~~~al~ai~~l~~~~~~~~~~~~~~i~~~L~~~l~~~-~~~~~~~lr~~a~~ 532 (1076)
+.||++.+++.|+.+++... ....+.++.+++.++...++.+.||++.+++.|...+... .+++++.++..+++
T Consensus 542 l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e 621 (960)
T 1wa5_C 542 ISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFE 621 (960)
T ss_dssp TTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
T ss_conf 56469999999999997146787764322799999999999888861247999999999999999739897278899999
Q ss_pred HHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf 9999998736010056399999999998368899997024899999999998801685121366459999
Q 001442 533 CISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLL 602 (1076)
Q Consensus 533 ~l~~i~~~~g~~~~~~~~~~ii~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~i~~~ll 602 (1076)
|++.++.+.+++.+.++.+.+++.+........ ....++++..++.+.... ..|.+|+..+.+.++
T Consensus 622 ~l~~l~~~~~~~~~~~~~~~~~p~~~~iL~~~~---~~~~~~~~~i~~~l~~~~-~~~~~~~~~~~~~l~ 687 (960)
T 1wa5_C 622 SIGAILNYTQRQNLPLLVDSMMPTFLTVFSEDI---QEFIPYVFQIIAFVVEQS-ATIPESIKPLAQPLL 687 (960)
T ss_dssp HHHHHHHTSCGGGHHHHHHHHHHHHHHHHHTTC---TTTHHHHHHHHHHHHHHC-SSCCTTTGGGHHHHT
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHC-CCCCHHHHHHHHHHC
T ss_conf 999999638953699999999999999998605---766999999999999735-478899999999980
No 6
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=1.00 E-value=1 Score=388.36 Aligned_cols=580 Identities=15% Similarity=0.208 Sum_probs=408.3
Q ss_pred CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCH
Q ss_conf 99288999999950899689899999998855009438999999998059998799999999997515588875667898
Q 001442 19 PDSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSL 98 (1076)
Q Consensus 19 ~~~~~l~~lL~~~~s~d~~~r~~Ae~~L~~~~~~~p~~~~~~l~~il~~~~~~~~R~~a~i~Lk~~i~~~~~~~w~~l~~ 98 (1076)
+|.+++.+++..+++||++.|++|+++|+++++ +|+.+ ..+.+++..+.++.+|++|+++||+++.++ |..+++
T Consensus 4 ~d~~~l~~~l~~~~~~d~~~r~~A~~~L~~~~~-~p~~w-~~~~~lL~~~~~~~vr~~aa~~L~~~i~~~----w~~l~~ 77 (971)
T 2x1g_F 4 IDIARLEEAVVSFYRSNSQNQAITHEWLTDAEA-SPQAW-QFSWQLMQLGKSQEVQFFGAITLHSKLMKH----WHEVPP 77 (971)
T ss_dssp -------CTHHHHHTSTTTC----CHHHHHTTT-STHHH-HHHHHHTCTTSCHHHHHHHHHHHHHHHHHC----GGGCCG
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHC-CHHHH-HHHHHHHHCCCCHHHHHHHHHHHHHHHHCC----HHHCCH
T ss_conf 559999999998769999999999999999874-97989-999999835994989999999999999715----864999
Q ss_pred HHHHHHHHHHHHHHHHCC--HHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCC------CHHHHHHHHHHHHHH
Q ss_conf 689999999989984132--266999999999999742169999401699999840299------887899999999999
Q 001442 99 HTQSSLKSMLLQSIQLES--AKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSD------SVKLQESAFLIFAQL 170 (1076)
Q Consensus 99 ~~~~~i~~~Ll~~l~~e~--~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~~~------~~~~r~~al~~L~~l 170 (1076)
+.+..+|+.+++.+.... ++.||++++.+++.|+++++| .||++++.+.+.++++ ++..++.++.+|..+
T Consensus 78 ~~~~~ir~~ll~~l~~~~~~~~~vr~kl~~~la~i~~~~~p--~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~~l~iL~~l 155 (971)
T 2x1g_F 78 ENREELKQKILESIVRFAGGPKIVLNRLCISLGAYIVHMLG--EWPGAIEEVINTFQNQRMPNVSADVQLWIMLEVLTAI 155 (971)
T ss_dssp GGHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTC--C------HHHHHHHHTC----CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 99999999999999986799878999999999999997062--2437999999997153345678788999999999985
Q ss_pred HHHHH---------------------------HHH---CCC-------C----HH-------------------------
Q ss_conf 99999---------------------------850---890-------0----48-------------------------
Q 001442 171 IINFI---------------------------QCL---TSS-------A----DR------------------------- 184 (1076)
Q Consensus 171 ~~~~~---------------------------~~l---~~~-------~----~~------------------------- 184 (1076)
...+. +.+ ... . ..
T Consensus 156 ~EEi~~~~~~~~r~~~~~~l~~~~~~vl~ll~~~l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~ip~~~~~~ll~~l~ 235 (971)
T 2x1g_F 156 PEEAQVIHTSVKRVVLRAEIAKRVQLVIHTVERYLKLQMNRVWDAEAYSNMNRAVKCVGTWIKNIGYTIEGCVTITAVLL 235 (971)
T ss_dssp HHHHHHCCCSSCHHHHHHHHHTTHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHH
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHH
T ss_conf 99882468578999999999987999999999998554678888642367999999999998257838656631999998
Q ss_pred ----------------------------------------------HHHHHHHHHHHHHHHH---HHHCCCH---HHHHH
Q ss_conf ----------------------------------------------6776359999999999---9827998---89999
Q 001442 185 ----------------------------------------------DRFQDLLPLMMRTLTE---SLNNGNE---ATAQE 212 (1076)
Q Consensus 185 ----------------------------------------------~~~~~l~p~il~~l~~---~~~~~~~---~~~~~ 212 (1076)
..+..++|.++..... ...++|. +....
T Consensus 236 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 315 (971)
T 2x1g_F 236 EVVHKCYWPCIHAGDGCMTADENELAESCLKTMVNIIIQPDCHNYPKTAFVLIKMFLDSLSEITKTEWKRENDNEDIIVH 315 (971)
T ss_dssp HHHHHHHSSSCC---CCCCHHHHHHHHHHHHHHHHHHHCSGGGGCHHHHHHHHHHHHHHHHHHHHHHSSSSCSCSHHHHH
T ss_pred HHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
T ss_conf 64355302323566555676774799999999999976801132088999999999986899999985656540689999
Q ss_pred HHHHHHHHHCCCCHHHH-----------HHHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHHHHHHH-C-----CCCH
Q ss_conf 99999998823868888-----------94999999999973278---744569999999999999721-0-----2521
Q 001442 213 ALELLIELAGTEPRFLR-----------RQLVDVVGSMLQIAEAE---SLEEGTRHLAIEFVITLAEAR-E-----RAPG 272 (1076)
Q Consensus 213 ~~~~l~~l~~~~~~~~~-----------~~~~~i~~~ll~~~~~~---~~~~~~r~~al~~l~~l~~~~-~-----~~~~ 272 (1076)
.++.+..+.+.++..+. +++..+++.++.++..+ ..+++++..+++||..+++.. . ..+.
T Consensus 316 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~ 395 (971)
T 2x1g_F 316 IYMLFVSSVERHSTLLLSGITSADPELSILVHRIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHK 395 (971)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
T ss_conf 99999999999999999873157653549999999999999758888886312458789999999999974133100089
Q ss_pred HHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCC--
Q ss_conf 220354469999999999423789983345788987554777721059999999998749974358798789884469--
Q 001442 273 MMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAA-- 350 (1076)
Q Consensus 273 ~~~~~~~~~~~l~~~l~~~l~~~~dd~~~~~~~~e~~d~~e~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~-- 350 (1076)
......+++..+++.++..+.+++++ +|...+. +++++-.+.++.+..++..++..++ +.+++.+++.+.+.+.+
T Consensus 396 ~~~~~~~~~~~ll~~l~~~~~~p~~~-~~~~~d~-~e~~~f~~~R~~~~~~l~~~~~~~~-~~~l~~~~~~l~~~l~~~~ 472 (971)
T 2x1g_F 396 CWEYIKPLYAHLTRILVRKSEQPDEK-SLAKWSS-DDLECFRCYRQDISDTFMYCYDVLN-DYILEILAAMLDEAIADLQ 472 (971)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCCCTT-TTSCSCH-HHHHHHHHHHHHHHHHHHHHHTTCT-THHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCC-CCCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHCC
T ss_conf 99999999999999999986199962-4335677-5799999999999999999999970-9999999999999997346
Q ss_pred ---CCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
Q ss_conf ---8966999999999999821689999829999999983078--98866899999999996643304377533441599
Q 001442 351 ---PEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFR--DPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLP 425 (1076)
Q Consensus 351 ---~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~--d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~ 425 (1076)
.+|+.|++++++++.+++++.+...++++.+++ ++..+. |+++.||.+++|++|++++++.... +|++.+++
T Consensus 473 ~~~~~w~~~eaal~~l~~iae~~~~~~~~~l~~l~~-~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~--~~l~~vl~ 549 (971)
T 2x1g_F 473 RHPTHWTKLEACIYSFQSVAEHFGGEEKRQIPRLMR-VLAEIPYEKLNVKLLGTALETMGSYCNWLMENP--AYIPPAIN 549 (971)
T ss_dssp HCTTCCHHHHHHHHHHHHTTTC------CHHHHHHH-HHHHSCTTTSCHHHHHHHHHHHHHTHHHHC------CHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH-HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCH--HHHHHHHH
T ss_conf 898738999999999999983548033477999999-998567653678999999999998788886088--98999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHHHH-HHHHH
Q ss_conf 999521589981289889999999640289333358648999999998505--866699999999999999827-65785
Q 001442 426 ALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQN--GKQMVQEGALTALASVADSSQ-EHFQK 502 (1076)
Q Consensus 426 ~l~~~l~d~~~~~v~~~a~~aL~~l~~~~~~~~l~~~l~~il~~l~~~l~~--~~~~v~~~al~ai~~l~~~~~-~~~~~ 502 (1076)
.++..+ + ++|+..|+.++..+++.++.. +.||++.++..+..+++. .+...+..++++++.++...+ +.+.+
T Consensus 550 ~l~~~l-~---~~v~~~A~~al~~l~~~~~~~-l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~ 624 (971)
T 2x1g_F 550 LLVRGL-N---SSMSAQATLGLKELCRDCQLQ-LKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPK 624 (971)
T ss_dssp HHHHHH-H---SSCHHHHHHHHHHHHHHCHHH-HHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHH
T ss_pred HHHHHH-C---HHHHHHHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_conf 999874-8---588999999999999998886-23007999999999972789992899999999999997299999999
Q ss_pred HHHHHHHHHHHHHHCCC-----CCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
Q ss_conf 29556799999983017-----7103466889999999999873601005639999999999836889999702489999
Q 001442 503 YYDAVMPFLKAILVNAT-----DKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQ 577 (1076)
Q Consensus 503 ~~~~i~~~L~~~l~~~~-----~~~~~~lr~~a~~~l~~i~~~~g~~~~~~~~~~ii~~l~~~~~~~~~~~~~~~~~~~~ 577 (1076)
|+..+++.+...+.... +++...-...++++++.+..+++. .+.+ ...+ .
T Consensus 625 ~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~-~~~~---------------------~~~~-~-- 679 (971)
T 2x1g_F 625 YLDIIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNT-DVDE---------------------QATD-Q-- 679 (971)
T ss_dssp HHHHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC----------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCC-CCCC---------------------CCCC-C--
T ss_conf 9999998999999999856899822599999999999999841677-7685---------------------3334-5--
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCEEEECCHHHHHHHHHHHHH
Q ss_conf 99999988016851213664599998606799833357898754347897431021038912452011598999999999
Q 001442 578 AWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATACNML 657 (1076)
Q Consensus 578 ~~~~l~~~~~~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~k~~A~~~L 657 (1076)
+ ..+.+.+|.+.+++.+...+...+ ++ ..-.+.++.++
T Consensus 680 -~------~~~~~~~~~~~i~~~l~~~l~~~~----------------~~-------------------~~v~e~~~~~~ 717 (971)
T 2x1g_F 680 -P------IVQPVLLVMQRTMPIFKRIAEMWV----------------EE-------------------IDVLEAACSAM 717 (971)
T ss_dssp -----------CCHHHHHTTHHHHHHHHHHTT----------------TC-------------------HHHHHHHHHHH
T ss_pred -C------CCCCHHHHHHHHHHHHHHHHHHCC----------------CC-------------------HHHHHHHHHHH
T ss_conf -6------788369999999999999998643----------------63-------------------78999999999
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHCCC
Q ss_conf 999999311034539878987600015
Q 001442 658 CCYADELKEGFFPWIDQVAPTLVPLLK 684 (1076)
Q Consensus 658 ~~i~~~~~~~~~p~~~~~~~~l~~~l~ 684 (1076)
+.++..++..+.||++.+++.+...+.
T Consensus 718 ~~~~~~~~~~~~p~l~~~~~~l~~~~~ 744 (971)
T 2x1g_F 718 KHAITNLRSSFQPMLQDLCLFIVASFQ 744 (971)
T ss_dssp HHHHHHHHC--CTHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 999986144042527899999999986
No 7
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=1.00 E-value=1 Score=388.36 Aligned_cols=507 Identities=18% Similarity=0.233 Sum_probs=381.3
Q ss_pred CCHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 9928899999995-089968989999999885500943899999999805999879999999999751558887566789
Q 001442 19 PDSAPFETLISHL-MSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLS 97 (1076)
Q Consensus 19 ~~~~~l~~lL~~~-~s~d~~~r~~Ae~~L~~~~~~~p~~~~~~l~~il~~~~~~~~R~~a~i~Lk~~i~~~~~~~w~~l~ 97 (1076)
++.+++.++|..+ .++|++.|++|+++|+++++ +|+.+ ..+..++.++.++.+|++|+++||+.+.++ |..++
T Consensus 21 ~~~~~l~~~l~~l~~~~~~~~r~~A~~~L~~~~~-~p~~~-~~~~~lL~~~~~~~vr~~aa~~L~~~i~~~----w~~l~ 94 (963)
T 2x19_B 21 FTVENVEKALHQLYYDPNIENKNLAQKWLMQAQV-SPQAW-HFSWQLLQPDKVPEIQYFGASALHIKISRY----WSDIP 94 (963)
T ss_dssp CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH-STTHH-HHHHHHTSTTSCHHHHHHHHHHHHHHHHHC----GGGSC
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHC-CHHHH-HHHHHHHCCCCCHHHHHHHHHHHHHHHHHC----HHHCC
T ss_conf 5599999999998359798999999999999846-99999-999998657972588999999999999738----87499
Q ss_pred HHHHHHHHHHHHHHHHHCC--HHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCC-----CCHHHHHHHHHHHHHH
Q ss_conf 8689999999989984132--26699999999999974216999940169999984029-----9887899999999999
Q 001442 98 LHTQSSLKSMLLQSIQLES--AKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSS-----DSVKLQESAFLIFAQL 170 (1076)
Q Consensus 98 ~~~~~~i~~~Ll~~l~~e~--~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~~-----~~~~~r~~al~~L~~l 170 (1076)
++.+..+|+.+++.+...+ ++.||++++.+++.|++.++| ..||++++.+.+.+++ +++..++.++.+|..+
T Consensus 95 ~~~~~~ir~~ll~~l~~~~~~~~~ir~kl~~~la~i~~~~~p-~~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~l~iL~~l 173 (963)
T 2x19_B 95 TDQYESLKAQLFTQITRFASGSKIVLTRLCVALASLALSMMP-DAWPCAVADMVRLFQAEDSPVDGQGRCLALLELLTVL 173 (963)
T ss_dssp GGGHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHTT-TTSTTHHHHHHHHHCC------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHC
T ss_conf 999999999999999987489889999999999999987483-1155599999999864335787478899999999868
Q ss_pred HHHHHH----------------------------HHCCCCH---------------------------------------
Q ss_conf 999998----------------------------5089004---------------------------------------
Q 001442 171 IINFIQ----------------------------CLTSSAD--------------------------------------- 183 (1076)
Q Consensus 171 ~~~~~~----------------------------~l~~~~~--------------------------------------- 183 (1076)
...+.. .+.+...
T Consensus 174 ~ee~~~~~~~~~~r~~~~~~l~~~~~~i~~ll~~~l~~~~~~~~~~~~~l~~l~~wi~~~~~~~~~~~ll~~l~~~l~~~ 253 (963)
T 2x19_B 174 PEEFQTSRLPQYRKGLVRTSLAVECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWVQLEVPLQDCEALIQAAFAALQDS 253 (963)
T ss_dssp HHHHTTCCC---------CCSGGGHHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHTSSCCGGGTHHHHHHHHHHTTST
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCC
T ss_conf 99885065869999999999998788999999999827788057999999999999828998534168999999986796
Q ss_pred ----------------------HHHHHHHHHHHHHH---HHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHH------HHH
Q ss_conf ----------------------86776359999999---99998279988999999999998823868888------949
Q 001442 184 ----------------------RDRFQDLLPLMMRT---LTESLNNGNEATAQEALELLIELAGTEPRFLR------RQL 232 (1076)
Q Consensus 184 ----------------------~~~~~~l~p~il~~---l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~------~~~ 232 (1076)
...+..+++.++.. +......+|.+.....++++..+.+.++..+. +++
T Consensus 254 ~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~ 333 (963)
T 2x19_B 254 ELFDSSVEAIVNAISQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNGDMETSHGICRIAVALGENHSRALLDQVEHWQSF 333 (963)
T ss_dssp TTHHHHHHHHHHHHTCTTGGGCHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
T ss_conf 47999999999997531124577999999999974079999999877989999999999999998699997375565899
Q ss_pred HHHHHHHHHHHCCC---CCCHHHHHHHHHHHHHHHHHHCC-----CCHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 99999999973278---74456999999999999972102-----52122035446999999999942378998334578
Q 001442 233 VDVVGSMLQIAEAE---SLEEGTRHLAIEFVITLAEARER-----APGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSA 304 (1076)
Q Consensus 233 ~~i~~~ll~~~~~~---~~~~~~r~~al~~l~~l~~~~~~-----~~~~~~~~~~~~~~l~~~l~~~l~~~~dd~~~~~~ 304 (1076)
..+++.++.+..++ ..+++++..++++|..+++.... .+.......+++.++++.++..+.+++++ +|...
T Consensus 334 ~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~p~~~-~~~~~ 412 (963)
T 2x19_B 334 LALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQLVDVLLHKAQFPSDE-EYGFW 412 (963)
T ss_dssp HHHHHHHHHHHTCSSCTTTTCGGGGGGHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHH-HHHTS
T ss_pred HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-CCCCC
T ss_conf 99999999997588888720345441299999999999862344457889999999999999999998099830-22677
Q ss_pred CCCCCCCCCC-CCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----CCCCHHHHHHHHHHHHHHHHHCHHHHHHHHH
Q ss_conf 8987554777-7210599999999987499743587987898844----6989669999999999998216899998299
Q 001442 305 ETEDEDAGES-SNYSVGQECLDRLAIALGGNTIVPVASEQLPAYL----AAPEWQKHHAALIALAQIAEGCAKVMVKNLE 379 (1076)
Q Consensus 305 ~~e~~d~~e~-~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l----~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~ 379 (1076)
++ | +.+++ +.++.+.++++.++...+ +.+++.+++.+.+.+ .+.+|+.|+++++++|.+++++.+...++++
T Consensus 413 ~~-d-e~~~~~~~r~~~~~~L~~~~~~~~-~~~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~~~~l~ 489 (963)
T 2x19_B 413 SS-D-EKEQFRIYRVDISDTLMYVYEMLG-AELLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNYSDVVP 489 (963)
T ss_dssp CH-H-HHHHHHHHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSCCSHHH
T ss_pred CH-H-HHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_conf 76-3-899999999999999999999706-89999999999999972579986679989999999997043822467899
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 99999983078988668999999999966433043775334415999995215899812898899999996402893333
Q 001442 380 QVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEIL 459 (1076)
Q Consensus 380 ~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~d~~~~~v~~~a~~aL~~l~~~~~~~~l 459 (1076)
.+++.+. .+.++++.||.+++|++|++++++.... ++++.+++.++..+.+ +.|+..||.++..+++.++.. +
T Consensus 490 ~l~~~l~-~l~~~~~~vr~~~~~~l~~~~~~l~~~~--~~l~~vl~~l~~~l~~---~~V~~~A~~al~~l~~~~~~~-l 562 (963)
T 2x19_B 490 GLIGLIP-RISISNVQLADTVMFTIGALSEWLADHP--VMINSVLPLVLHALGN---PELSVSSVSTLKKICRECKYD-L 562 (963)
T ss_dssp HHHHHGG-GSCCCSHHHHHHHHHHHHHTHHHHHHCH--HHHTTTHHHHHHHTTC---GGGHHHHHHHHHHHHHHTGGG-C
T ss_pred HHHHHHH-HCCCCCHHHHHHHHHHHHHHHHHHHHCH--HHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHHHHHHH-H
T ss_conf 9999998-5799858999999999998888887588--9899999999987178---468999999999999998998-7
Q ss_pred CCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHCC----CCCHHHHHHHHHHH
Q ss_conf 58648999999998505--866699999999999999827-657852955679999998301----77103466889999
Q 001442 460 TPYLDGIVSKLLVLLQN--GKQMVQEGALTALASVADSSQ-EHFQKYYDAVMPFLKAILVNA----TDKSNRMLRAKSME 532 (1076)
Q Consensus 460 ~~~l~~il~~l~~~l~~--~~~~v~~~al~ai~~l~~~~~-~~~~~~~~~i~~~L~~~l~~~----~~~~~~~lr~~a~~ 532 (1076)
.||++.++..+..+++. .+...+..++.+++.++...+ +.+.+|+..+++.+...|... .+++....+...++
T Consensus 563 ~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~ 642 (963)
T 2x19_B 563 PPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKNLHSLISPYIQQLEKLAEEIPNPSNKLAIVHILG 642 (963)
T ss_dssp TTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 76699999999998635789848899999999999962999999999999998999999999827898778999999999
Q ss_pred HHHHHHHHHCH
Q ss_conf 99999987360
Q 001442 533 CISLVGMAVGK 543 (1076)
Q Consensus 533 ~l~~i~~~~g~ 543 (1076)
|++.++++++.
T Consensus 643 ~l~~i~~~~~~ 653 (963)
T 2x19_B 643 LLSNLFTTLDI 653 (963)
T ss_dssp HHHHHHHHCCS
T ss_pred HHHHHHHHCCC
T ss_conf 99999977489
No 8
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=1.00 E-value=1 Score=370.54 Aligned_cols=929 Identities=13% Similarity=0.143 Sum_probs=589.3
Q ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 99999980599987999999999975155888756678986899999999899841322669999999999997421699
Q 001442 59 LKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPE 138 (1076)
Q Consensus 59 ~~l~~il~~~~~~~~R~~a~i~Lk~~i~~~~~~~w~~l~~~~~~~i~~~Ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~ 138 (1076)
..+++-+. +.++.+|.+|..-|.+.+... ...+++.....+...|++.+. +++..+|+.++.+++.++... +.
T Consensus 9 ~~lL~~l~-s~d~~~R~~A~~~L~~~l~~~----~~~~~~~~~~~il~~Ll~~L~-d~~~~vR~~A~~~L~~l~~~~-~~ 81 (1230)
T 1u6g_C 9 SNLLEKMT-SSDKDFRFMATNDLMTELQKD----SIKLDDDSERKVVKMILKLLE-DKNGEVQNLAVKCLGPLVSKV-KE 81 (1230)
T ss_dssp HHHHHHTT-CSSHHHHHHHHHHHHHHTSSS----CCSCCTTHHHHHHHHHHHHTT-CSSHHHHHHHHHHHHHHHTTS-CH
T ss_pred HHHHHHCC-CCCHHHHHHHHHHHHHHHCCC----CCCCCHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHC-CH
T ss_conf 99997558-987859999999999997416----657875679999999999866-999899999999999999758-79
Q ss_pred CCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHHH-CCCHHHHHHHHHH
Q ss_conf 99401699999840299887899999999999999998508900-486776359999999999982-7998899999999
Q 001442 139 NGWPELLPFMFQCVSSDSVKLQESAFLIFAQLIINFIQCLTSSA-DRDRFQDLLPLMMRTLTESLN-NGNEATAQEALEL 216 (1076)
Q Consensus 139 ~~w~~ll~~l~~~~~~~~~~~r~~al~~L~~l~~~~~~~l~~~~-~~~~~~~l~p~il~~l~~~~~-~~~~~~~~~~~~~ 216 (1076)
..++.+++.++..+.+++..+|..+..+++.+... +.... .........+.+++.+...+. +++..++..++.+
T Consensus 82 ~~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~----l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~ 157 (1230)
T 1u6g_C 82 YQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGE----LPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDI 157 (1230)
T ss_dssp HHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHH----CC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH----CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 89999999999986698388999999999999996----79744444117889999999999987578846799999999
Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHCCCHHHHHHHH-----------
Q ss_conf 999882386888894999999999973278744569999999999999721025212203544699999-----------
Q 001442 217 LIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLF----------- 285 (1076)
Q Consensus 217 l~~l~~~~~~~~~~~~~~i~~~ll~~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~l~----------- 285 (1076)
|..+++..+..+.+|++.+++.++..+.+. +..+|..++.++..++.. .+. ..+..+++.++
T Consensus 158 l~~~~~~~~~~l~~~~~~ll~~l~~~L~~~--~~~vR~~a~~al~~l~~~---~~~--~~~~~~l~~l~~~L~~~~~~~~ 230 (1230)
T 1u6g_C 158 MADMLSRQGGLLVNFHPSILTCLLPQLTSP--RLAVRKRTIIALGHLVMS---CGN--IVFVDLIEHLLSELSKNDSMST 230 (1230)
T ss_dssp HHHHHHHTCSSCTTTHHHHHHHHGGGGGCS--SHHHHHHHHHHHHHHTTT---C------CTTHHHHHHHHHHHTCSSCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHHH---CCH--HHHHHHHHHHHHHHCCCCCHHH
T ss_conf 999999827677887999999999987599--689999999999999985---689--9999999999998616775568
Q ss_pred ---------------------------HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCC--
Q ss_conf ---------------------------999994237899833457889875547777210599999999987499743--
Q 001442 286 ---------------------------AILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTI-- 336 (1076)
Q Consensus 286 ---------------------------~~l~~~l~~~~dd~~~~~~~~e~~d~~e~~~~~~a~~~l~~l~~~~~~~~~-- 336 (1076)
+.++..+. +++...+..+..++..++..++ +.+
T Consensus 231 r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~-----------------d~~~~vR~~a~~~l~~l~~~~~-~~~~~ 292 (1230)
T 1u6g_C 231 TRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCN-----------------VDDDELREYCIQAFESFVRRCP-KEVYP 292 (1230)
T ss_dssp CTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHS-----------------SCCTTTHHHHHHHHHHHHHCTT-CCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----------------CCCHHHHHHHHHHHHHHHHHCH-HHHHH
T ss_conf 99999999999998689899889999999999866-----------------8977899999999999999784-87777
Q ss_pred -HHHHHHHHHHHHC-------------------------------------CCCHHHHHHHHHHHHHHHHHCHHHHHHHH
Q ss_conf -5879878988446-------------------------------------98966999999999999821689999829
Q 001442 337 -VPVASEQLPAYLA-------------------------------------APEWQKHHAALIALAQIAEGCAKVMVKNL 378 (1076)
Q Consensus 337 -~~~l~~~l~~~l~-------------------------------------~~~~~~r~aal~~l~~l~~~~~~~~~~~l 378 (1076)
++.+++.+...+. +..|++|.+++.+++.++...++.+.+++
T Consensus 293 ~l~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~ 372 (1230)
T 1u6g_C 293 HVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFY 372 (1230)
T ss_dssp HHHHHHHHHTTCCCCC------------------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_conf 68999999999827899888764411011223344653011001366645556779999999999999974666799999
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCH------------------HHHHHHHHHHHHHHHHHCCCCCCHHHH
Q ss_conf 99999998307898866899999999996643304------------------377533441599999521589981289
Q 001442 379 EQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGP------------------DLQNQFHPQVLPALAGAMDDFQNPRVQ 440 (1076)
Q Consensus 379 ~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~------------------~~~~~~~~~il~~l~~~l~d~~~~~v~ 440 (1076)
+.+++.+...+.|.++.||.+++.+++.++...+. .....+++.+++.+.+.+.+ +++++|
T Consensus 373 ~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~-~~~~vr 451 (1230)
T 1u6g_C 373 KTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKE-KSVKTR 451 (1230)
T ss_dssp TTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTC-SCHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC-CCHHHH
T ss_conf 9998999987179865799999999999999724243434675201356455999998746999999998613-778799
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCH--HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHC
Q ss_conf 889999999640289333358648999999998505866--69999999999999982765-785295567999999830
Q 001442 441 AHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQ--MVQEGALTALASVADSSQEH-FQKYYDAVMPFLKAILVN 517 (1076)
Q Consensus 441 ~~a~~aL~~l~~~~~~~~l~~~l~~il~~l~~~l~~~~~--~v~~~al~ai~~l~~~~~~~-~~~~~~~i~~~L~~~l~~ 517 (1076)
.+++.++..++..++. .+.+|++.+++.+...+.+... .++..++.+++.++...+.. |.||++.++|.+...+.+
T Consensus 452 ~~~~~~L~~l~~~~~~-~l~~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l~d 530 (1230)
T 1u6g_C 452 QCCFNMLTELVNVLPG-ALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGD 530 (1230)
T ss_dssp HHHHHHHHHHHHHSTT-TTGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHCHH-HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCC
T ss_conf 9999999999997611-057779999999999974878851689999999999998389887886799999999999714
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHCH------HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 17710346688999999999987360------100563999999999983688999970248999999999988016851
Q 001442 518 ATDKSNRMLRAKSMECISLVGMAVGK------DKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDFL 591 (1076)
Q Consensus 518 ~~~~~~~~lr~~a~~~l~~i~~~~g~------~~~~~~~~~ii~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 591 (1076)
....+|..++.+++.++..+|. ..+.||.+.+++.++...... +.+..+|..++.+++.++...|..+.
T Consensus 531 ----~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~-d~~~~vr~~a~~~lg~L~~~~g~~~~ 605 (1230)
T 1u6g_C 531 ----PFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAA-DIDQEVKERAISCMGQIICNLGDNLG 605 (1230)
T ss_dssp ----SSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHHHHSCS-SSCHHHHHHHHHHHHHHHHHTGGGCC
T ss_pred ----CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHHHHHHCCHHH
T ss_conf ----2468999999999999987167555653232789999999999987326-99889999999999999998270324
Q ss_pred CCHHHHHHHHHHHCCCCCCC--------CCCCCCCCCCCCCCCCCCCCHHHCCCCEEEECCHHHHHHHHHHHHHHHHHHH
Q ss_conf 21366459999860679983--------3357898754347897431021038912452011598999999999999999
Q 001442 592 PYMSVVMPPLLQSAQLKPDV--------TITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATACNMLCCYADE 663 (1076)
Q Consensus 592 ~~l~~i~~~ll~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~k~~A~~~L~~i~~~ 663 (1076)
+|++.+++.+...+.....- .+...-. ..+-+.+-..........++......|..|+.+++.++..
T Consensus 606 ~~~~~~l~~L~~~l~~e~~r~~~~~al~~i~~~~~-----~~~~~~~~~~i~~~L~~~l~~~~~~~r~~a~~al~~l~~~ 680 (1230)
T 1u6g_C 606 SDLPNTLQIFLERLKNEITRLTTVKALTLIAGSPL-----KIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKN 680 (1230)
T ss_dssp THHHHHHHHHHHHTTSSSHHHHHHHHHHHHTTCSS-----CCCCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCC-----CCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHC
T ss_conf 43889999999884453059999999999981856-----4436888999999999999867888999999999999960
Q ss_pred HHHCCC-CCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC-----------CCCC-CHHHHHHH---H
Q ss_conf 311034-539878987600015327788999999989999999999998088-----------9999-97999999---9
Q 001442 664 LKEGFF-PWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEKGL-----------APGR-NESYVKQL---S 727 (1076)
Q Consensus 664 ~~~~~~-p~~~~~~~~l~~~l~~~~~~~ir~~a~~~l~~L~~~~~~~~~~~~-----------~~~~-~~~~~~~~---~ 727 (1076)
.+..+. +++..++..+.+++++. +..++..+..++..++........... .... .......+ +
T Consensus 681 ~~~~~~~~~v~~~l~~ll~ll~~~-D~~~~~~~~~~L~~l~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~l~~~~ 759 (1230)
T 1u6g_C 681 YSDSLTAAMIDAVLDELPPLISES-DMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPLLQGGALSAMLDFF 759 (1230)
T ss_dssp CCTTCCHHHHHHHHTTCGGGSCTT-CHHHHHHHHHHHHHHTTSCGGGGGGTTTTTHHHHHHHHTCTTCCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
T ss_conf 433389899999999987635754-1878999999999998849126777677689999999758621057899999999
Q ss_pred HHH---------HHHHHHHHCCC--------CCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH-----------H-
Q ss_conf 999---------99999997009--------929899999999999999849999998899999999-----------9-
Q 001442 728 DFI---------IPALVEALHKE--------PDTEICASMLDSLNECIQISGPLLDEGQVRSIVDEI-----------K- 778 (1076)
Q Consensus 728 ~~i---------l~~l~~~l~~~--------~~~~~~~~~l~~l~~~i~~~g~~~~~~~~~~~~~~l-----------~- 778 (1076)
..+ ++.++..+... ....++..+-.++..++...|+... ..+..++..+ .
T Consensus 760 ~~l~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 838 (1230)
T 1u6g_C 760 QALVVTGTNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGP-AVVGQFIQDVKNSRSTDSIRLLA 838 (1230)
T ss_dssp HHHHTTCCTTCSHHHHHHHHSTTTTTC----CCHHHHHHHHHHHHHHHHHSCCCSH-HHHTTTTTTTTTTTCCHHHHHHH
T ss_pred HHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHH-HHHHHHHHHHCCCCCCHHHHHHH
T ss_conf 99983478878899999998500357887320001048999999999984656668-99999999837887667999999
Q ss_pred -HHHHHHHHHHHHHHHHHCCCCCC--HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCC
Q ss_conf -99998887699999962187888--57644-634543669999999999999999981122056488888767532169
Q 001442 779 -QVITASSSRKRERAERAKAEDFD--AEESE-LIKEENEQEEEVFDQVGEILGTLIKTFKAAFLPFFDELSSYLTPMWGK 854 (1076)
Q Consensus 779 -~~L~~~~~~~~~~~~~~~~ed~d--~~~~~-~~~~~~e~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~ 854 (1076)
..+.... . . .+.. ++-.+ +..--.+....++..++.++|.++.... ..++|.++..+..
T Consensus 839 l~~l~~~g-------~-~--~~~~~~~~l~~~~~~~l~~~~~~Vr~aAa~aLg~l~~~~~-------~~~lp~ll~~l~~ 901 (1230)
T 1u6g_C 839 LLSLGEVG-------H-H--IDLSGQLELKSVILEAFSSPSEEVKSAASYALGSISVGNL-------PEYLPFVLQEITS 901 (1230)
T ss_dssp HHHHHHHH-------H-H--SCCCSCTHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHTH-------HHHHHHHHHHHHS
T ss_pred HHHHHHHC-------C-C--CCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCH-------HHHHHHHHHHHHC
T ss_conf 99999861-------5-6--7876564189999998479977899999999687752699-------9889999998726
Q ss_pred CCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCH------------
Q ss_conf 9998899999998999977723-666753886999999663699946776655899799851298816------------
Q 001442 855 DKTAEERRIAICIFDDVAEQCR-EAALKYYETYLPFLLEACNDENQDVRQAAVYGLGVCAEFGGSVVK------------ 921 (1076)
Q Consensus 855 ~~~~~~r~~al~~l~~l~~~~~-~~~~~~~~~i~~~l~~~l~~~~~~vr~~a~~~lg~l~~~~~~~~~------------ 921 (1076)
. +..|...+..+.+++...+ ....||.+.+++.++..+.+.+..+|..++.|+|.++...++.+.
T Consensus 902 ~--~~~~~~~l~al~e~i~~~~~~~~~~~~~~i~~~L~~~~~~~~~~~r~~~a~~lg~l~~~~~~~l~p~l~~~l~~~~~ 979 (1230)
T 1u6g_C 902 Q--PKRQYLLLHSLKEIISSASVVGLKPYVENIWALLLKHCECAEEGTRNVVAECLGKLTLIDPETLLPRLKGYLISGSS 979 (1230)
T ss_dssp C--GGGHHHHHHHHHHHHHSSCSTTTHHHHHHHHHHHTTCCCCSSTTHHHHHHHHHHHHHHSSGGGTHHHHTTTSSSSCH
T ss_pred C--CHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCH
T ss_conf 6--03249889999999823876667766999999999873383044689999887566506768888999998569978
Q ss_pred ----------------------HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC--CHHHHHHHHH
Q ss_conf ----------------------8799999999985169987882446679899999999985527999--9764999999
Q 001442 922 ----------------------PLVGEALSRLNVVIRHPNALQPENLMAYDNAVSALGKICQFHRDSI--DAAQVVPAWL 977 (1076)
Q Consensus 922 ----------------------~~~~~il~~L~~~l~~~~~~~~~~~~~~~na~~al~~l~~~~~~~~--~~~~~i~~~l 977 (1076)
++++.+++.+...+.++ +..+|++|+.+++.++.+.|..+ +++.++|.++
T Consensus 980 ~~R~~~~~~l~~~~~~~~~~~~~~l~~~~~~ll~~l~d~------~~~vr~~a~~~l~~~~~~~~~~~~~~l~~~lp~l~ 1053 (1230)
T 1u6g_C 980 YARSSVVTAVKFTISDHPQPIDPLLKNCIGDFLKTLEDP------DLNVRRVALVTFNSAAHNKPSLIRDLLDTVLPHLY 1053 (1230)
T ss_dssp HHHHHHHHHTGGGCCSSCCTHHHHHHHHSTTTHHHHSSS------STHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCC------CHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_conf 899999999999970682335898999899999864898------58799999999999984285768977988989999
Q ss_pred HHCCCCCCH-----------------HHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHH
Q ss_conf 609998857-----------------877999999999984059854486767545699999998357888888899999
Q 001442 978 NCLPIKGDL-----------------IEAKIVHEQLCSMVERSDSDLLGPNHQYLPKIVSVFAEILCGKDLATEQTLSRI 1040 (1076)
Q Consensus 978 ~~lp~~~d~-----------------~e~~~~~~~l~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~ 1040 (1076)
...+.+.+. +.++.+++++..+++..... +. +..++..+...|. . +.+++...
T Consensus 1054 ~~~~~~~~~~~~v~~gp~k~~vd~~l~~rk~a~~~~~~ll~~~~~~-i~-----~~~~~~~~~~gl~-d---~~di~~~~ 1123 (1230)
T 1u6g_C 1054 NETKVRKELIREVEMGPFKHTVDDGLDIRKAAFECMYTLLDSCLDR-LD-----IFEFLNHVEDGLK-D---HYDIKMLT 1123 (1230)
T ss_dssp HTTSCCGGGEEEEEETTEEEEEETHHHHHHHHHHHHHHHHHSSCSS-SC-----HHHHHHHHHHTTS-S---CHHHHHHH
T ss_pred HHHCCCHHHHEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-CC-----HHHHHHHHHCCCC-C---HHHHHHHH
T ss_conf 8830268760133058960236774899999999999999988874-78-----9999999980467-6---68899999
Q ss_pred HHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHH
Q ss_conf 999999996189456999984199999999996
Q 001442 1041 VNLLKQLQQTLPPATLASTWSSLQPQQQLALQS 1073 (1076)
Q Consensus 1041 ~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ 1073 (1076)
..++..+.+..|+. ..+-+.++-+..++.|..
T Consensus 1124 ~~~l~~l~~~~~~~-~~~~~~~~~~~~~~~l~~ 1155 (1230)
T 1u6g_C 1124 FLMLVRLSTLCPSA-VLQRLDRLVEPLRATCTT 1155 (1230)
T ss_dssp HHHHHHHHHSCCHH-HHTTTTTTHHHHHHHHHC
T ss_pred HHHHHHHHHCCHHH-HHHHHHHHHHHHHHHHHH
T ss_conf 99999998408798-999999999999999841
No 9
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=1.00 E-value=1 Score=361.22 Aligned_cols=482 Identities=16% Similarity=0.235 Sum_probs=359.0
Q ss_pred CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCH
Q ss_conf 99288999999950899689899999998855009438999999998059998799999999997515588875667898
Q 001442 19 PDSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSL 98 (1076)
Q Consensus 19 ~~~~~l~~lL~~~~s~d~~~r~~Ae~~L~~~~~~~p~~~~~~l~~il~~~~~~~~R~~a~i~Lk~~i~~~~~~~w~~l~~ 98 (1076)
++.+++.++|..+++|+++.|++|+++|+++++ +|+. ...+.+++.++.++.+|++|+++||+.+.++ |..+++
T Consensus 13 ~~~~~l~~~l~~~~~p~~~~r~~Ae~~L~~~~~-~p~~-~~~l~~iL~~s~~~~vr~~aa~~Lk~~i~~~----W~~l~~ 86 (1049)
T 3m1i_C 13 LDIALLDQVVSTFYQGSGVQQKQAQEILTKFQD-NPDA-WQKADQILQFSTNPQSKFIALSILDKLITRK----WKLLPN 86 (1049)
T ss_dssp CCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH-STTG-GGGHHHHHHHCSCHHHHHHHHHHHHHHHHHT----GGGSCH
T ss_pred CCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH-CCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH----CCCCCH
T ss_conf 659999999999868993899999999999883-9569-9999999862998899999999999999760----704999
Q ss_pred HHHHHHHHHHHHHHHHCC--------HHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf 689999999989984132--------266999999999999742169999401699999840299887899999999999
Q 001442 99 HTQSSLKSMLLQSIQLES--------AKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQL 170 (1076)
Q Consensus 99 ~~~~~i~~~Ll~~l~~e~--------~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~~~~~~~r~~al~~L~~l 170 (1076)
+.+..||+.+++.+...+ ++.+|++++.+++.|++.++| +.||++++.+.+.++ ++...++.++.+|..+
T Consensus 87 ~~~~~ir~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p-~~Wp~ll~~L~~~~~-~~~~~~~~~l~~L~~l 164 (1049)
T 3m1i_C 87 DHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWP-QNWPEFIPELIGSSS-SSVNVCENNMIVLKLL 164 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTT-TTCTTHHHHHHHHHT-TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHC-CCHHHHHHHHHHHHHH
T ss_conf 99999999999999862776200000289999999999999997681-115479999999871-5858899999999999
Q ss_pred HHHHHHHHCC---CCH----HHHHHHHHHHH-----------------------------------------HHHHHHHH
Q ss_conf 9999985089---004----86776359999-----------------------------------------99999998
Q 001442 171 IINFIQCLTS---SAD----RDRFQDLLPLM-----------------------------------------MRTLTESL 202 (1076)
Q Consensus 171 ~~~~~~~l~~---~~~----~~~~~~l~p~i-----------------------------------------l~~l~~~~ 202 (1076)
...+...-.. ... ...+...++.+ ++.+...+
T Consensus 165 ~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~~~~~~~~~ll~~l~~~~ 244 (1049)
T 3m1i_C 165 SEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIPYRYIYETNILELLSTKF 244 (1049)
T ss_dssp HHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHTHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_conf 99998726001326899999999999999999999999986688899999999999998608899886055999999986
Q ss_pred HCCCHHHHHHHHHHHHHHHCC-----------------------------------------------------------
Q ss_conf 279988999999999998823-----------------------------------------------------------
Q 001442 203 NNGNEATAQEALELLIELAGT----------------------------------------------------------- 223 (1076)
Q Consensus 203 ~~~~~~~~~~~~~~l~~l~~~----------------------------------------------------------- 223 (1076)
. .+++.+..+++||..++..
T Consensus 245 l-~~~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~ 323 (1049)
T 3m1i_C 245 M-TSPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTT 323 (1049)
T ss_dssp H-HSHHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHH
T ss_pred C-CCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHH
T ss_conf 8-987679999999999994889950346889999999999999988627985417877445771028999999999999
Q ss_pred ----CCHH------HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHHC
Q ss_conf ----8688------889499999999997327874456999999999999972102521220354469999999999423
Q 001442 224 ----EPRF------LRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLL 293 (1076)
Q Consensus 224 ----~~~~------~~~~~~~i~~~ll~~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~ 293 (1076)
+... +.+++..+++.++.+...+ +++++..+++||..+++.-...+.......+++.++++.++..|.
T Consensus 324 ~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~--d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~ 401 (1049)
T 3m1i_C 324 YLARNRALLESDESLRELLLNAHQYLIQLSKIE--ERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMV 401 (1049)
T ss_dssp HHHHHHHHHHSCGGGHHHHHHHHHHHHHHHTSS--CHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 999999998288214799999999999988689--089999999999999999974635899999999999999998658
Q ss_pred CCCCCCCCCCCCCC------CCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHC--CCCHHHHHHHHHHHHH
Q ss_conf 78998334578898------755477772105999999999874997435879878988446--9896699999999999
Q 001442 294 DIEDDPLWHSAETE------DEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLA--APEWQKHHAALIALAQ 365 (1076)
Q Consensus 294 ~~~dd~~~~~~~~e------~~d~~e~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~--~~~~~~r~aal~~l~~ 365 (1076)
+.+ |.+|..+++. .+|+|+++.++.+..+|+.++...+ ..+++.+.+.+.+.++ +.+|+.|+++++++|.
T Consensus 402 ~~e-d~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L~~l~~~~~-~~~l~~v~~~l~~~l~~~~~~W~~~eaal~algs 479 (1049)
T 3m1i_C 402 RPE-EVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNV-IDTEEIMISKLARQIDGSEWSWHNINTLSWAIGS 479 (1049)
T ss_dssp CCT-TCCEEECTTSCEEECSSCCHHHHHHHHHHHHHHHHHHHHCH-HHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHH
T ss_pred CCC-CEEEEECCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
T ss_conf 996-20000579985048653122279999999999999883698-9999999999998727787898999999999999
Q ss_pred HHHHCHHHHH-HHHHHHHHHHHHHCC-----CCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCCHHH
Q ss_conf 9821689999-829999999983078-----9886689999999999664330437753344159999952158998128
Q 001442 366 IAEGCAKVMV-KNLEQVLSMVLNSFR-----DPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRV 439 (1076)
Q Consensus 366 l~~~~~~~~~-~~l~~i~~~l~~~l~-----d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~d~~~~~v 439 (1076)
+++++.+... .+++.+++.+..... |+++.+|..++|++|++++++... .+++..+++.++..+.+ ++++|
T Consensus 480 ia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~--~~~l~~vl~~ll~~l~~-~~~~V 556 (1049)
T 3m1i_C 480 ISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAH--WNFLRTVILKLFEFMHE-THEGV 556 (1049)
T ss_dssp TTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHC--HHHHHHHHHHHHHHTTS-SCHHH
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHCC-CCHHH
T ss_conf 8602376255799999999999877654356654999988999999779999867--89999999999998618-98789
Q ss_pred HHHHHHHHHHHHHCCCCCCC-------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
Q ss_conf 98899999996402893333-------58648999999998505866699999999999999827--6578529556799
Q 001442 440 QAHAASAVLNFSENCTPEIL-------TPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQ--EHFQKYYDAVMPF 510 (1076)
Q Consensus 440 ~~~a~~aL~~l~~~~~~~~l-------~~~l~~il~~l~~~l~~~~~~v~~~al~ai~~l~~~~~--~~~~~~~~~i~~~ 510 (1076)
+..||.++.++++.++.... .||++.++..+..++...+.......+.+++.++...+ +...+|+..+++.
T Consensus 557 ~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~~~~~~~~~~~~~l~~~ 636 (1049)
T 3m1i_C 557 QDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERSVAERNRLLSDLMQL 636 (1049)
T ss_dssp HHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 99999999999999889861156778775799999989999985899999999999999997599789999999999988
Q ss_pred HHHHHH
Q ss_conf 999983
Q 001442 511 LKAILV 516 (1076)
Q Consensus 511 L~~~l~ 516 (1076)
+...|.
T Consensus 637 ~~~~~~ 642 (1049)
T 3m1i_C 637 PNMAWD 642 (1049)
T ss_dssp HHHHHH
T ss_pred HHHHHH
T ss_conf 999999
No 10
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=1.00 E-value=1 Score=339.09 Aligned_cols=772 Identities=13% Similarity=0.115 Sum_probs=559.3
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHHCCCC------CCC
Q ss_conf 999879999999999751558887566789868999999998998413-2266999999999999742169------999
Q 001442 68 SPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLE-SAKSISKKLCDTVSELASNILP------ENG 140 (1076)
Q Consensus 68 ~~~~~~R~~a~i~Lk~~i~~~~~~~w~~l~~~~~~~i~~~Ll~~l~~e-~~~~vr~~~~~~i~~ia~~~~~------~~~ 140 (1076)
+.+.++|+.|...|++.-. .....+...|++.+.++ .+..+|..++..+.......++ ...
T Consensus 12 s~d~~~r~~A~~~L~~~~~------------~~~~~~~~~L~~~l~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~ 79 (876)
T 1qgr_A 12 SPDRLELEAAQKFLERAAV------------ENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQR 79 (876)
T ss_dssp CSCHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHH------------CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 9898999999999999871------------6804699999999857899879999999999876055434767899864
Q ss_pred CCHHHHH--------HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCC--CHHHH
Q ss_conf 4016999--------9984029988789999999999999999850890048677635999999999998279--98899
Q 001442 141 WPELLPF--------MFQCVSSDSVKLQESAFLIFAQLIINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNG--NEATA 210 (1076)
Q Consensus 141 w~~ll~~--------l~~~~~~~~~~~r~~al~~L~~l~~~~~~~l~~~~~~~~~~~l~p~il~~l~~~~~~~--~~~~~ 210 (1076)
|+.+-+. +++.+.++++.+ ..+..+++.+..... . ...+|.+++.+.+.+.++ ++.++
T Consensus 80 w~~l~~~~~~~ik~~ll~~l~~~~~~~-~~~~~~l~~i~~~~~--------~---~~~w~~ll~~l~~~l~~~~~~~~~r 147 (876)
T 1qgr_A 80 WLAIDANARREVKNYVLHTLGTETYRP-SSASQCVAGIACAEI--------P---VNQWPELIPQLVANVTNPNSTEHMK 147 (876)
T ss_dssp HHTSCHHHHHHHHHHHHHHTTTCCSSS-CHHHHHHHHHHHHHG--------G---GTCCTTHHHHHHHHHHCTTCCHHHH
T ss_pred HCCCCHHHHHHHHHHHHHHHCCCCHHH-HHHHHHHHHHHHHHC--------C---CCCCHHHHHHHHHHHHCCCCCHHHH
T ss_conf 406999999999999999867994788-999999999998467--------6---2256889999999870889879999
Q ss_pred HHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHH
Q ss_conf 99999999988238-68888949999999999732787445699999999999997210252122035446999999999
Q 001442 211 QEALELLIELAGTE-PRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILM 289 (1076)
Q Consensus 211 ~~~~~~l~~l~~~~-~~~~~~~~~~i~~~ll~~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~ 289 (1076)
..++.++..+++.. ++.+.++++.+++.+...+.+.+.+..+|..++.++..++.. .+.... .......+++.+.
T Consensus 148 ~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~---~~~~~~-~~~~~~~il~~l~ 223 (876)
T 1qgr_A 148 ESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEF---TKANFD-KESERHFIMQVVC 223 (876)
T ss_dssp HHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGG---CHHHHT-SHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH---HHHHHH-HHHHHHHHHHHHH
T ss_conf 999999999987458766786799999999986167999889999999999999999---999887-1789999999999
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 9423789983345788987554777721059999999998749974358----798789884469896699999999999
Q 001442 290 SMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVP----VASEQLPAYLAAPEWQKHHAALIALAQ 365 (1076)
Q Consensus 290 ~~l~~~~dd~~~~~~~~e~~d~~e~~~~~~a~~~l~~l~~~~~~~~~~~----~l~~~l~~~l~~~~~~~r~aal~~l~~ 365 (1076)
..+.+ + +...+..+.+++..++...+ +.+.+ .+++.+...+.+.+..+|..++..+..
T Consensus 224 ~~~~~---~--------------~~~vr~~a~~~l~~l~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~ 285 (876)
T 1qgr_A 224 EATQC---P--------------DTRVRVAALQNLVKIMSLYY-QYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSN 285 (876)
T ss_dssp HHTTC---S--------------SHHHHHHHHHHHHHHHHHSG-GGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred HHCCC---C--------------CHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 87179---9--------------88999999999999999869-999988778999999999638734999999999999
Q ss_pred HHHHCH---------------------HHHHHHHHHHHHHHHHHCC-------CCCHHHHHHHHHHHHHHHHHHCHHHHH
Q ss_conf 982168---------------------9999829999999983078-------988668999999999966433043775
Q 001442 366 IAEGCA---------------------KVMVKNLEQVLSMVLNSFR-------DPHPRVRWAAINAIGQLSTDLGPDLQN 417 (1076)
Q Consensus 366 l~~~~~---------------------~~~~~~l~~i~~~l~~~l~-------d~~~~vr~~a~~~l~~l~~~~~~~~~~ 417 (1076)
+++... ....+++..+++.++..+. |.++.+|.++..+++.++..++.
T Consensus 286 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~---- 361 (876)
T 1qgr_A 286 VCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED---- 361 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG----
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCH----
T ss_conf 9887876766510011247775420189999989887079998753133444545217999999999999987758----
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 33441599999521589981289889999999640289333358648999999998505866699999999999999827
Q 001442 418 QFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQ 497 (1076)
Q Consensus 418 ~~~~~il~~l~~~l~d~~~~~v~~~a~~aL~~l~~~~~~~~l~~~l~~il~~l~~~l~~~~~~v~~~al~ai~~l~~~~~ 497 (1076)
...+.+++.+...+.+ +++++|.+|+.+++.+++.+.++.+.++++.+++.++..+++++..+|..++.+++.++...+
T Consensus 362 ~~~~~~l~~l~~~l~~-~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~ 440 (876)
T 1qgr_A 362 DIVPHVLPFIKEHIKN-PDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLP 440 (876)
T ss_dssp GGHHHHHHHHHHHTTC-SSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCG
T ss_pred HHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 6699999999988469-982899999999999974887778999999999999998679978999999999999998572
Q ss_pred HHH--HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHC-------------HHHHHHHHHHHHHHHHHHHC
Q ss_conf 657--852955679999998301771034668899999999998736-------------01005639999999999836
Q 001442 498 EHF--QKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVG-------------KDKFRDDAKQVMEVLMSLQG 562 (1076)
Q Consensus 498 ~~~--~~~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~g-------------~~~~~~~~~~ii~~l~~~~~ 562 (1076)
..+ .+|++.+++.+...+.. . ..+|..+..+++.++...+ ++.+.||++.+++.+.....
T Consensus 441 ~~~~~~~~l~~~l~~l~~~l~~---~--~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~ 515 (876)
T 1qgr_A 441 EAAINDVYLAPLLQCLIEGLSA---E--PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTD 515 (876)
T ss_dssp GGTSSTTTHHHHHHHHHHHTTS---C--HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTT
T ss_pred HHCCCHHHHHHHHHHHHHHHCC---C--HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 0114477799999999998758---8--8899999999999999850201234444555403215769999999999972
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCEEEE
Q ss_conf 88999970248999999999988016851213664599998606799833357898754347897431021038912452
Q 001442 563 SQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGI 642 (1076)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 642 (1076)
..-..+..++..++.+++.++...|.++.+|+..+++.+++.+...-... .. .. .++|.
T Consensus 516 ~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~--~~-----~~--~~~d~------------ 574 (876)
T 1qgr_A 516 RPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQME--SH-----IQ--STSDR------------ 574 (876)
T ss_dssp SCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTT--TS-----CC--STTHH------------
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH--HC-----CC--CHHHH------------
T ss_conf 76742046999999999999997743118999999999999999999887--12-----48--86359------------
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHH-HCCCCCHHHHHHHHHHCCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCH
Q ss_conf 01159899999999999999931-1034539878987600015327-788999999989999999999998088999997
Q 001442 643 KTSVLEEKATACNMLCCYADELK-EGFFPWIDQVAPTLVPLLKFYF-HEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNE 720 (1076)
Q Consensus 643 ~~~~~~~k~~A~~~L~~i~~~~~-~~~~p~~~~~~~~l~~~l~~~~-~~~ir~~a~~~l~~L~~~~~~~~~~~~~~~~~~ 720 (1076)
....+-+..++.+++.++..++ ..+.||++.+++.+...+.... ...+|..++.+++.++...+.
T Consensus 575 -~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~------------ 641 (876)
T 1qgr_A 575 -IQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGG------------ 641 (876)
T ss_dssp -HHHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGG------------
T ss_pred -HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH------------
T ss_conf -9999999999999999999828542057899999999999985368888508999999999999876------------
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 99999999999999999700992989999999999999984999999889999999999999888769999996218788
Q 001442 721 SYVKQLSDFIIPALVEALHKEPDTEICASMLDSLNECIQISGPLLDEGQVRSIVDEIKQVITASSSRKRERAERAKAEDF 800 (1076)
Q Consensus 721 ~~~~~~~~~il~~l~~~l~~~~~~~~~~~~l~~l~~~i~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~ed~ 800 (1076)
...+++..+++.+...+....+.+++..++.++..+...+|. .+.++++.++..+...+. +.+.
T Consensus 642 -~~~~~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~-----~~~~~~~~i~~~l~~~l~----------~~~~ 705 (876)
T 1qgr_A 642 -EFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQS-----NIIPFCDEVMQLLLENLG----------NENV 705 (876)
T ss_dssp -GGGGGHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGG-----GGHHHHHHHHHHHHHHHT----------CTTS
T ss_pred -HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHC----------CCCC
T ss_conf -099999999999999875865087999999999999998878-----546459999999999748----------7123
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCC---C-------HHHHHHHHHHHHH
Q ss_conf 85764463454366999999999999999998112205648888876753216999---9-------8899999998999
Q 001442 801 DAEESELIKEENEQEEEVFDQVGEILGTLIKTFKAAFLPFFDELSSYLTPMWGKDK---T-------AEERRIAICIFDD 870 (1076)
Q Consensus 801 d~~~~~~~~~~~e~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~---~-------~~~r~~al~~l~~ 870 (1076)
+ ..++..+..+++.+++..|+.|.+++..++|.+...+..+. + ...|..++.++..
T Consensus 706 ~--------------~~~~~~~~~~l~~i~~~~g~~~~~~l~~~~~~l~~~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~ 771 (876)
T 1qgr_A 706 H--------------RSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTG 771 (876)
T ss_dssp C--------------GGGHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred C--------------HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 3--------------87639999999999997035279999999999999985558999758899999999999999999
Q ss_pred HHHHHHH----------HHHHHHHHHHHHHHHHCCCC--CHHHHHHHHHHHHHHHHHCCC-CCHHH-HHHHHHHHHH-HH
Q ss_conf 9777236----------66753886999999663699--946776655899799851298-81687-9999999998-51
Q 001442 871 VAEQCRE----------AALKYYETYLPFLLEACNDE--NQDVRQAAVYGLGVCAEFGGS-VVKPL-VGEALSRLNV-VI 935 (1076)
Q Consensus 871 l~~~~~~----------~~~~~~~~i~~~l~~~l~~~--~~~vr~~a~~~lg~l~~~~~~-~~~~~-~~~il~~L~~-~l 935 (1076)
+++..+. .+.+|++.+++.+...+.++ +..+|++|+.++|.++...+. .+.+| ...+++.+.. .+
T Consensus 772 i~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~i~~ll~~~l 851 (876)
T 1qgr_A 772 IVQGLKGDQENVHPDVMLVQPRVEFILSFIDHIAGDEDHTDGVVACAAGLIGDLCTAFGKDVLKLVEARPMIHELLTEGR 851 (876)
T ss_dssp HHHHHHCSSSSCCGGGGGSGGGHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHCTHHHHHHHTSHHHHHHHHHHH
T ss_pred HHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHCHHHHHHHHHHH
T ss_conf 99997457555554388999999999999999865888888999999999999998828488999970489999999875
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 699878824466798999999999855279
Q 001442 936 RHPNALQPENLMAYDNAVSALGKICQFHRD 965 (1076)
Q Consensus 936 ~~~~~~~~~~~~~~~na~~al~~l~~~~~~ 965 (1076)
.++ +..+|.+|+.++|.+....+.
T Consensus 852 ~~~------~~~~r~~a~~a~~~~~~~~~~ 875 (876)
T 1qgr_A 852 RSK------TNKAKTLARWATKELRKLKNQ 875 (876)
T ss_dssp HCS------CHHHHHHHHHHHHHHHHHHTC
T ss_pred HCC------CHHHHHHHHHHHHHHHHHHCC
T ss_conf 468------876899999999999975347
Done!