BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001443
(1076 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6YYA3|CRS1_ORYSJ Chloroplastic group IIA intron splicing facilitator CRS1,
chloroplastic OS=Oryza sativa subsp. japonica
GN=Os08g0360100 PE=2 SV=1
Length = 725
Score = 392 bits (1006), Expect = e-107, Method: Compositional matrix adjust.
Identities = 242/587 (41%), Positives = 330/587 (56%), Gaps = 43/587 (7%)
Query: 167 EKEKEVPTLAELKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERW-RHAEVVK 225
EK+ VPT AE +L EL RLR G + + KAGIT+ +V + +W + E+
Sbjct: 142 EKKTRVPTRAETELEAGELERLRRAARGKERWARAKKAGITDEVVEEVRGQWAKGQELAG 201
Query: 226 IVCEDLCRLNMKRTHDSLERKTGGLVVWRSGSKIILYRGADYKYPYFLADESSTDGASSD 285
+ + R M R + LE KTGGLVVW G +YRG+ Y +
Sbjct: 202 VRIVEPLRRCMDRAREILEIKTGGLVVWTRGGIHFVYRGSSY----------LENAKRHR 251
Query: 286 DLPNQLVDDEGLDETKTHSSGADSAKPSGQSPTNKKVQQTLIHSVGSPDKLRYQLPGEAE 345
D N +E L S S P+ Q K +TL + + P +
Sbjct: 252 DFVNY---NEEL-------SPVTSNNPTSQGKYWSK-DETLTNDNDE-ADDKDDKPIKGT 299
Query: 346 LVE-EADRLLDGLGPRFTDWWGYDPQPVDADLLPATVPGYRRPFRLLPYGVQPKLTNDEM 404
L E E +RLLD LGPRF DWW P PVDADLLP VP ++ PFR P GV+P L ++E+
Sbjct: 300 LYEREVNRLLDSLGPRFIDWWWNTPLPVDADLLPEVVPDFKTPFRQCPPGVRPALADEEL 359
Query: 405 TTLRRLGRPLPCHFALGRNRNLQGLAAAIVKLWEKCEIAKIAVKRGAQNTNSEMMAQELK 464
T LR+ RPLP HF LGRN LQGLAAAI+KLWEK IAK+AVK G QNTN E MA+ LK
Sbjct: 360 TYLRKHARPLPTHFVLGRNTKLQGLAAAILKLWEKSLIAKVAVKVGIQNTNHEQMARNLK 419
Query: 465 RLTGGTLLSRDREFIVFYRGKDFLPPAASSAIEERRKHEFSTSNDSKEEPEL-------- 516
RLTGGT++ R++++I+ YRGKDFLP + ++ E R+ + +EE L
Sbjct: 420 RLTGGTVILRNKDYIIIYRGKDFLPGGVAESVIE-RESQVHDQQAKEEEARLKMADSLQM 478
Query: 517 --GNRHDNSGDNTQDEFGCTNDQKSTMHSEQKERRSAEVAIRR-------TNIRLSRVLE 567
G + S T E+ +D + +E R E R RLS + +
Sbjct: 479 IVGLSSERSYVGTFREYQDFHDSHARRTTENNFRIQLEAKKHRLEKELKDQEWRLSMLTK 538
Query: 568 KKAEAEKLLAELEEE-RPEQYEVDKEGITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVE 626
K + ++LA+L P + + D+E +TEEER + RK+GL+M +L+GRRGVF+G +E
Sbjct: 539 KIERSNQVLAKLHSSWSPSKKDGDRELLTEEERRIFRKIGLKMDEHVLLGRRGVFEGVIE 598
Query: 627 NMHLHWKHRELVKIISKQRKIEAALQEARTLEVESGGILVAVERVNKGYAIILYRGKNYE 686
+H HWKH+E+VK+I+KQ + + LEVE+GG L+A+ER +AIILYRGKNY
Sbjct: 599 EIHQHWKHKEVVKVITKQNQASQITYTSMMLEVETGGTLIAIERFTTSHAIILYRGKNYR 658
Query: 687 RPACLRPKTLLTKREAMKRSLEAQRRQSLKLHVLELTRNIEKLKLQL 733
RP P LLTKREA++RS+E QRR S+K E ++I++LK +L
Sbjct: 659 RPTKSAPSNLLTKREALQRSIEVQRRGSMKYFAQERKKSIDELKREL 705
Score = 64.7 bits (156), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 77/143 (53%), Gaps = 21/143 (14%)
Query: 147 NQLNKEVGRQKW-LAKNSKMNEKEKEVPTLAELK--------------LSGKELRRLRTL 191
++L KE+ Q+W L+ +K E+ +V LA+L L+ +E R R +
Sbjct: 520 HRLEKELKDQEWRLSMLTKKIERSNQV--LAKLHSSWSPSKKDGDRELLTEEERRIFRKI 577
Query: 192 GIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRTHDSLERKTGGLV 251
G+ + + + +G+ G+ EG++ IH+ W+H EVVK++ + + T LE +TGG +
Sbjct: 578 GLKMDEHVLLGRRGVFEGVIEEIHQHWKHKEVVKVITKQNQASQITYTSMMLEVETGGTL 637
Query: 252 V----WRSGSKIILYRGADYKYP 270
+ + + IILYRG +Y+ P
Sbjct: 638 IAIERFTTSHAIILYRGKNYRRP 660
Score = 39.3 bits (90), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 42/78 (53%), Gaps = 3/78 (3%)
Query: 947 LRMKKRPV---LAVGRSNIVTGVAKAIKAHFEKYPLAIVNVKGRAKGTSVQEVVAKLEEA 1003
LR RP+ +GR+ + G+A AI +EK +A V VK + T+ +++ L+
Sbjct: 362 LRKHARPLPTHFVLGRNTKLQGLAAAILKLWEKSLIAKVAVKVGIQNTNHEQMARNLKRL 421
Query: 1004 TGAVLVSQEPSKVILYRG 1021
TG ++ + +I+YRG
Sbjct: 422 TGGTVILRNKDYIIIYRG 439
>sp|Q9FYT6|CRS1_MAIZE Chloroplastic group IIA intron splicing facilitator CRS1,
chloroplastic OS=Zea mays GN=CRS1 PE=1 SV=1
Length = 715
Score = 392 bits (1006), Expect = e-107, Method: Compositional matrix adjust.
Identities = 245/590 (41%), Positives = 329/590 (55%), Gaps = 66/590 (11%)
Query: 167 EKEKEVPTLAELKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAE---V 223
EK+ PT AE +L ELRRLR L G+ + + KAG+T+ +V + W E
Sbjct: 157 EKKPREPTRAETELETHELRRLRRLARGIGRWARAKKAGVTDEVVKEVRREWASGEELAA 216
Query: 224 VKIVCEDLCRLNMKRTHDSLERKTGGLVVWRSGSKIILYRGADYKYPYFLADESSTDGAS 283
V+IV + R +M R + LE KTGGLVVW G +YRG+ Y+ +
Sbjct: 217 VRIV--EPLRRSMDRAREILEIKTGGLVVWTKGDMHFVYRGSKYQ----------QNAKH 264
Query: 284 SDDLPNQLVDDEGLDETKTHSSGADSAKPSGQSPTNKKVQQTLIHSVGSPDKLRYQLPGE 343
S + D+ E G +P V+ TL
Sbjct: 265 SHTFLTNVHKDDAFQENDQSICGQKDEEP---------VKGTLYE--------------- 300
Query: 344 AELVEEADRLLDGLGPRFTDWWGYDPQPVDADLLPATVPGYRRPFRLLPYGVQPKLTNDE 403
E +RLLD LGPRF DWW P PVDADLLP VPG + P+RL P GV+P L ++E
Sbjct: 301 ----REVNRLLDTLGPRFVDWWWDTPLPVDADLLPEFVPGSKTPYRLCPPGVRPTLADEE 356
Query: 404 MTTLRRLGRPLPCHFALGRNRNLQGLAAAIVKLWEKCEIAKIAVKRGAQNTNSEMMAQEL 463
+T LR+L R LP HFALGRN LQGLAAAI+KLWEK IAKIAVK G QNTN+E MA L
Sbjct: 357 LTYLRKLARLLPTHFALGRNTRLQGLAAAILKLWEKSLIAKIAVKIGIQNTNNEQMAWNL 416
Query: 464 KRLTGGTLLSRDREFIVFYRGKDFLPPAASSAIEERRKH-----------------EFST 506
K LTGGT++ R+++FI+ YRGKDFLP + + +R
Sbjct: 417 KHLTGGTVILRNKDFIILYRGKDFLPGGVAQTVIQREAQVHDEQVKEEEARLKAVDSLQM 476
Query: 507 SNDSKEEPELGNRHDNSGDNTQDEFGCTNDQKS-TMHSEQKERRSAEVAIRRTNIRLSRV 565
+ EE LG + G + + F N + S TM + E+ E ++ +LS V
Sbjct: 477 VGELSEESSLGTFREYQGFHAK--FVHENTENSNTMIELEAEKYRLEKELKDHEWKLS-V 533
Query: 566 LEKKAE-AEKLLAELEEE-RPEQYEVDKEGITEEERYMLRKVGLRMKAFLLMGRRGVFDG 623
L KK E + + LA+L P + D+E +TEEE+ M R++G +M +L+GRRG+FDG
Sbjct: 534 LNKKIERSNQALAKLHSSWSPSEQSADREHLTEEEKIMFRRIGRKMDGLVLLGRRGIFDG 593
Query: 624 TVENMHLHWKHRELVKIISKQRKIEAALQEARTLEVESGGILVAVERVNKGYAIILYRGK 683
+E +H HWKH+E+VK+I+KQ + + A LEVE+GGIL+AVE++ +AIILYRGK
Sbjct: 594 VIEEIHQHWKHKEVVKVITKQNQTRQIMYAASLLEVETGGILIAVEKLTTSHAIILYRGK 653
Query: 684 NYERPACLRPKTLLTKREAMKRSLEAQRRQSLKLHVLELTRNIEKLKLQL 733
NY RPA LLTKREA++RS+E QRR S+K V E ++I +LK +L
Sbjct: 654 NYRRPAKSSFSNLLTKREALRRSIEVQRRGSMKYFVRERQKSILELKRKL 703
Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 71/142 (50%), Gaps = 21/142 (14%)
Query: 148 QLNKEVGRQKWLAKNSKMNEK-EKEVPTLAELK--------------LSGKELRRLRTLG 192
+L KE+ +W K S +N+K E+ LA+L L+ +E R +G
Sbjct: 519 RLEKELKDHEW--KLSVLNKKIERSNQALAKLHSSWSPSEQSADREHLTEEEKIMFRRIG 576
Query: 193 IGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRTHDSLERKTGGLVV 252
+ + +G+ GI +G++ IH+ W+H EVVK++ + + LE +TGG+++
Sbjct: 577 RKMDGLVLLGRRGIFDGVIEEIHQHWKHKEVVKVITKQNQTRQIMYAASLLEVETGGILI 636
Query: 253 ----WRSGSKIILYRGADYKYP 270
+ IILYRG +Y+ P
Sbjct: 637 AVEKLTTSHAIILYRGKNYRRP 658
Score = 38.1 bits (87), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 38/67 (56%)
Query: 955 LAVGRSNIVTGVAKAIKAHFEKYPLAIVNVKGRAKGTSVQEVVAKLEEATGAVLVSQEPS 1014
A+GR+ + G+A AI +EK +A + VK + T+ +++ L+ TG ++ +
Sbjct: 371 FALGRNTRLQGLAAAILKLWEKSLIAKIAVKIGIQNTNNEQMAWNLKHLTGGTVILRNKD 430
Query: 1015 KVILYRG 1021
+ILYRG
Sbjct: 431 FIILYRG 437
>sp|Q9LF10|CRS1_ARATH Chloroplastic group IIA intron splicing facilitator CRS1,
chloroplastic OS=Arabidopsis thaliana GN=At5g16180 PE=2
SV=2
Length = 720
Score = 325 bits (832), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 179/414 (43%), Positives = 251/414 (60%), Gaps = 39/414 (9%)
Query: 349 EADRLLDGLGPRFTDWWGYDPQPVDADLLPATVPGYRRPFRLLPYGVQPKLTNDEMTTLR 408
EADRLLDGLGPR+ DWW P PVDADLLP V GY P R P + KLT++E+T LR
Sbjct: 311 EADRLLDGLGPRYMDWWMRRPFPVDADLLPEVVNGYMTPSRRCPPNTRAKLTDEELTYLR 370
Query: 409 RLGRPLPCHFALGRNRNLQGLAAAIVKLWEKCEIAKIAVKRGAQNTNSEMMAQELKRLTG 468
+ +PLP HF LGRN LQGLA+AIVKLWEKC IAKIA+K GA NTN+E MA EL+ LTG
Sbjct: 371 NIAQPLPFHFVLGRNYGLQGLASAIVKLWEKCIIAKIAIKWGALNTNNEEMADELRYLTG 430
Query: 469 GTLLSRDREFIVFYRGKDFLPPAASSAIEERRK--HEFSTSNDSKEEPELGNRHDNSGDN 526
G L+ R++ IV YRGKDFL + +E+R + + ++K E ++ +
Sbjct: 431 GVLILRNKYLIVLYRGKDFLSDEVADLVEDRERLLSRYQHFEETKRESDIELLEVVTNGK 490
Query: 527 TQDEFGCTNDQKSTMHSEQKERRSAEVAIRRTNIRLSRVLEKKAEAEKLLAELEEE---- 582
E TN + + ++ +R+ E+ R LE +AE +L EL+ +
Sbjct: 491 QLKE---TNKSGTLLEFQELQRKFGEMD--------PRNLETEAEKARLEKELKSQEHKL 539
Query: 583 ---------------------RPEQYEVDKEGITEEERYMLRKVGLRMKAFLLMGRRGVF 621
+P + + D E +T EER LR++GL+M + L++GRRGVF
Sbjct: 540 SILKSKIEKSNMELFKLNSLWKPSEGDDDIEILTNEERECLRRIGLKMNSSLVLGRRGVF 599
Query: 622 DGTVENMHLHWKHRELVKIISKQRKIEAALQEARTLEVESGGILVAVERVNKGYAIILYR 681
G +E +H HWKHRE+ K+I+ Q+ + A+ LE ES G+L+++E++ +G+AI++YR
Sbjct: 600 FGVMEGLHQHWKHREVAKVITMQKLFSRVVYTAKALETESNGVLISIEKLKEGHAILIYR 659
Query: 682 GKNYERPAC-LRPKTLLTKREAMKRSLEAQRRQSLKLHVLELTRNIEKLKLQLV 734
GKNY+RP+ L + LLTKR+A++RS+ QR SLK + R IE LK+ LV
Sbjct: 660 GKNYKRPSSKLMAQNLLTKRKALQRSVVMQRLGSLKFFAYQRERAIEDLKVSLV 713
Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 54/95 (56%), Gaps = 4/95 (4%)
Query: 180 LSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRT 239
L+ +E LR +G+ + L +G+ G+ G++ G+H+ W+H EV K++ + T
Sbjct: 572 LTNEERECLRRIGLKMNSSLVLGRRGVFFGVMEGLHQHWKHREVAKVITMQKLFSRVVYT 631
Query: 240 HDSLERKTGGLVV----WRSGSKIILYRGADYKYP 270
+LE ++ G+++ + G I++YRG +YK P
Sbjct: 632 AKALETESNGVLISIEKLKEGHAILIYRGKNYKRP 666
Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 82/337 (24%), Positives = 135/337 (40%), Gaps = 51/337 (15%)
Query: 179 KLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCE-DLCRLNMK 237
KL+ +EL LR + L +G+ +G+ + I + W + KI + N +
Sbjct: 360 KLTDEELTYLRNIAQPLPFHFVLGRNYGLQGLASAIVKLWEKCIIAKIAIKWGALNTNNE 419
Query: 238 RTHDSLERKTGGLVVWRSGSKIILYRGADYKYPYFLADESSTDGASSDDLPNQLVDDEGL 297
D L TGG+++ R+ I+LYRG D FL+DE + +D L +
Sbjct: 420 EMADELRYLTGGVLILRNKYLIVLYRGKD-----FLSDEVAD---LVEDRERLLSRYQHF 471
Query: 298 DETKTHS--------SGADSAKPSGQSPTNKKVQQTLIHSVGSPDKLRYQLPGEAELVEE 349
+ETK S + K + +S T + Q+ L G D P E E
Sbjct: 472 EETKRESDIELLEVVTNGKQLKETNKSGTLLEFQE-LQRKFGEMD------PRNLETEAE 524
Query: 350 ADRLLDGLGPRFTDWWGYDPQPVDADLLPATVPGYRRPFRLLPYGVQPK--------LTN 401
RL L Q +L + + L +P LTN
Sbjct: 525 KARLEKEL----------KSQEHKLSILKSKIEKSNMELFKLNSLWKPSEGDDDIEILTN 574
Query: 402 DEMTTLRRLGRPLPCHFALGRNRNLQGLAAAIVKLWEKCEIAKIAVKRGAQNTNSEMM-- 459
+E LRR+G + LGR G+ + + W+ E+AK+ Q S ++
Sbjct: 575 EERECLRRIGLKMNSSLVLGRRGVFFGVMEGLHQHWKHREVAKVIT---MQKLFSRVVYT 631
Query: 460 AQELKRLTGGTLLS----RDREFIVFYRGKDFLPPAA 492
A+ L+ + G L+S ++ I+ YRGK++ P++
Sbjct: 632 AKALETESNGVLISIEKLKEGHAILIYRGKNYKRPSS 668
Score = 41.6 bits (96), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 38/67 (56%)
Query: 955 LAVGRSNIVTGVAKAIKAHFEKYPLAIVNVKGRAKGTSVQEVVAKLEEATGAVLVSQEPS 1014
+GR+ + G+A AI +EK +A + +K A T+ +E+ +L TG VL+ +
Sbjct: 380 FVLGRNYGLQGLASAIVKLWEKCIIAKIAIKWGALNTNNEEMADELRYLTGGVLILRNKY 439
Query: 1015 KVILYRG 1021
++LYRG
Sbjct: 440 LIVLYRG 446
>sp|Q67XL4|Y3544_ARATH Uncharacterized CRM domain-containing protein At3g25440,
chloroplastic OS=Arabidopsis thaliana GN=At3g25440 PE=2
SV=1
Length = 444
Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 103/176 (58%), Gaps = 8/176 (4%)
Query: 562 LSRVLEKKAEAEKLLAELEEERP-EQYEV--DKEGITEEERYMLRKVGLRMKAFLLMGRR 618
L+++ + + + E+L+ +++ P E E D E +T EE + K+GL+ K ++ +GRR
Sbjct: 142 LNKLRKARKKEERLMETMKKLEPSESAETTHDPEILTPEEHFYYLKMGLKCKNYVPVGRR 201
Query: 619 GVFDGTVENMHLHWKHRELVKIISKQRKIEAALQEARTLEVESGGILVAVERVNKGYAII 678
G++ G + NMHLHWK + ++++ K + + A L +GGI++ V++G II
Sbjct: 202 GIYQGVILNMHLHWKKHQTLQVVIKTFTPDEVKEIAVELARLTGGIVLD---VHEGNTII 258
Query: 679 LYRGKNYERP--ACLRPKTLLTKREAMKRSLEAQRRQSLKLHVLELTRNIEKLKLQ 732
+YRGKNY +P + P+ L +++A+ +S ++++ ++ L + ++ L+ Q
Sbjct: 259 MYRGKNYVQPPTEIMSPRITLPRKKALDKSKCRDALRAVRKYIPRLEQELQLLQAQ 314
Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 191 LGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRTHDSLERKTGGL 250
+G+ + + +G+ GI +G++ +H W+ + +++V + +K L R TGG+
Sbjct: 188 MGLKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLQVVIKTFTPDEVKEIAVELARLTGGI 247
Query: 251 VV-WRSGSKIILYRGADYKYP 270
V+ G+ II+YRG +Y P
Sbjct: 248 VLDVHEGNTIIMYRGKNYVQP 268
Score = 40.8 bits (94), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 47/93 (50%), Gaps = 2/93 (2%)
Query: 399 LTNDEMTTLRRLGRPLPCHFALGRNRNLQGLAAAIVKLWEKCEIAKIAVKRGAQNTNSEM 458
LT +E ++G + +GR QG+ + W+K + ++ +K + E+
Sbjct: 177 LTPEEHFYYLKMGLKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLQVVIKTFTPDEVKEI 236
Query: 459 MAQELKRLTGGTLLS-RDREFIVFYRGKDFLPP 490
A EL RLTGG +L + I+ YRGK+++ P
Sbjct: 237 -AVELARLTGGIVLDVHEGNTIIMYRGKNYVQP 268
>sp|Q9SL79|CAF1P_ARATH CRS2-associated factor 1, chloroplastic OS=Arabidopsis thaliana
GN=At2g20020 PE=1 SV=2
Length = 701
Score = 75.1 bits (183), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 55/90 (61%)
Query: 180 LSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRT 239
L+ +E+R L T + ++L +G+ G+T ++N IH+ W+ V KI C+ +C ++M
Sbjct: 243 LTKEEVRELVTSCLKTTRQLNMGRDGLTHNMLNNIHDLWKRRRVCKIKCKGVCTVDMDNV 302
Query: 240 HDSLERKTGGLVVWRSGSKIILYRGADYKY 269
+ LE K GG V++R G + L+RG +Y +
Sbjct: 303 CEQLEEKIGGKVIYRRGGVLFLFRGRNYNH 332
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 55/112 (49%), Gaps = 5/112 (4%)
Query: 376 LLPATVPGYRRPFRLLPYGVQPKLTNDEMTTLRRLGRPLPCHFALGRNRNLQGLAAAIVK 435
L P Y R + +P G LT E T +RR GR L LG+N L + +
Sbjct: 342 LWKPVAPVYPRLIQQVPEG----LTRQEATNMRRKGRELMPICKLGKNGVYCDLVKNVKE 397
Query: 436 LWEKCEIAKIAVKRGAQNTNSEMMAQELKRLTGGTLLSRDREFIVFYRGKDF 487
+E CE+ +I + G + ++ + +LK L L+S + E I+ +RG+++
Sbjct: 398 AFEVCELVRIDCQ-GMKGSDFRKIGAKLKDLVPCVLVSFENEQILIWRGREW 448
Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 50/86 (58%), Gaps = 6/86 (6%)
Query: 941 LLRKQALRMKKR-----PVLAVGRSNIVTGVAKAIKAHFEKYPLAIVNVKGRAKGTSVQE 995
L R++A M+++ P+ +G++ + + K +K FE L ++ +G KG+ ++
Sbjct: 361 LTRQEATNMRRKGRELMPICKLGKNGVYCDLVKNVKEAFEVCELVRIDCQG-MKGSDFRK 419
Query: 996 VVAKLEEATGAVLVSQEPSKVILYRG 1021
+ AKL++ VLVS E +++++RG
Sbjct: 420 IGAKLKDLVPCVLVSFENEQILIWRG 445
Score = 42.7 bits (99), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 45/98 (45%), Gaps = 4/98 (4%)
Query: 588 EVDKEGITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVENMHLHWKHRELVKIISKQRKI 647
E+ E +T+EE L L+ L MGR G+ + N+H WK R + KI K
Sbjct: 237 EILGEPLTKEEVRELVTSCLKTTRQLNMGRDGLTHNMLNNIHDLWKRRRVCKIKCKGVCT 296
Query: 648 EAALQEARTLEVESGGILVAVERVNKGYAIILYRGKNY 685
LE + GG ++ +G + L+RG+NY
Sbjct: 297 VDMDNVCEQLEEKIGGKVI----YRRGGVLFLFRGRNY 330
>sp|Q84N49|CAF1P_MAIZE CRS2-associated factor 1, chloroplastic OS=Zea mays GN=CAF1 PE=1
SV=1
Length = 674
Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 50/90 (55%)
Query: 180 LSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRT 239
L+ +E+ L + +++L +G+ G+T ++ IH W+ V KI C+ +C ++M
Sbjct: 185 LTKEEVSELVKGSLKSKRQLNMGRDGLTHNMLENIHSHWKRKRVCKIKCKGVCTIDMDNI 244
Query: 240 HDSLERKTGGLVVWRSGSKIILYRGADYKY 269
LE K GG V+ R G I L+RG +Y Y
Sbjct: 245 CHQLEEKVGGKVIHRQGGVIFLFRGRNYNY 274
Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 47/94 (50%), Gaps = 4/94 (4%)
Query: 592 EGITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVENMHLHWKHRELVKIISKQRKIEAAL 651
E +T+EE L K L+ K L MGR G+ +EN+H HWK + + KI K
Sbjct: 183 EPLTKEEVSELVKGSLKSKRQLNMGRDGLTHNMLENIHSHWKRKRVCKIKCKGVCTIDMD 242
Query: 652 QEARTLEVESGGILVAVERVNKGYAIILYRGKNY 685
LE + GG ++ +G I L+RG+NY
Sbjct: 243 NICHQLEEKVGGKVIH----RQGGVIFLFRGRNY 272
Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 64/142 (45%), Gaps = 8/142 (5%)
Query: 380 TVPGYRRPFRLLPYGVQPKLTNDEMTTLRRLGRPLPCHFALGRNRNLQGLAAAIVKLWEK 439
P Y R +P G+ P DE T +R G LP LG+N L + + +E
Sbjct: 288 VAPVYPRLVTKVPGGLTP----DEATEMRTRGHQLPPICKLGKNGVYANLVNQVREAFEA 343
Query: 440 CEIAKIAVKRGAQNTNSEMMAQELKRLTGGTLLSRDREFIVFYRGKDF---LPPAASSAI 496
C++ ++ G ++ + +LK L LLS + E I+ +RG D+ LPP +S
Sbjct: 344 CDLVRVDCS-GLNKSDCRKIGAKLKDLVPCILLSFEFEHILMWRGSDWKSSLPPLENSYE 402
Query: 497 EERRKHEFSTSNDSKEEPELGN 518
+ + FS +++ GN
Sbjct: 403 VTKVQESFSGKESNEKVTHSGN 424
Score = 42.4 bits (98), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 46/89 (51%)
Query: 180 LSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRT 239
L+ E +RT G L K+GK G+ +VN + E + ++V++ C L + + ++
Sbjct: 303 LTPDEATEMRTRGHQLPPICKLGKNGVYANLVNQVREAFEACDLVRVDCSGLNKSDCRKI 362
Query: 240 HDSLERKTGGLVVWRSGSKIILYRGADYK 268
L+ +++ I+++RG+D+K
Sbjct: 363 GAKLKDLVPCILLSFEFEHILMWRGSDWK 391
>sp|Q5VMQ5|CAF1P_ORYSJ CRS2-associated factor 1, chloroplastic OS=Oryza sativa subsp.
japonica GN=Os01g0495900 PE=2 SV=1
Length = 701
Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 49/90 (54%)
Query: 180 LSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRT 239
L+ +E+ L + +++L IG+ G+T ++ IH W+ V KI C+ +C ++M
Sbjct: 185 LTKEEVDELVKATLKTKRQLNIGRDGLTHNMLENIHSHWKRKRVCKIKCKGVCTVDMDNV 244
Query: 240 HDSLERKTGGLVVWRSGSKIILYRGADYKY 269
LE K GG V+ G I L+RG +Y Y
Sbjct: 245 CQQLEEKVGGKVIHHQGGVIFLFRGRNYNY 274
Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 65/131 (49%), Gaps = 11/131 (8%)
Query: 365 WGYDPQPVDADLL--PATVPGYRRPFRLLPYGVQPKLTNDEMTTLRRLGRPLPCHFALGR 422
+ Y +P+ +L PA P Y R + +P G LT DE +R+ GR LP LG+
Sbjct: 272 YNYRTRPIYPLMLWKPAA-PVYPRLVKKIPDG----LTPDEAEDMRKRGRQLPPICKLGK 326
Query: 423 NRNLQGLAAAIVKLWEKCEIAKIAVKRGAQNTNSEMMAQELKRLTGGTLLSRDREFIVFY 482
N L + + +E C++ ++ G ++ + +LK L TLLS + E I+ +
Sbjct: 327 NGVYLNLVKQVREAFEACDLVRVDCS-GLNKSDCRKIGAKLKDLVPCTLLSFEFEHILMW 385
Query: 483 RGKDF---LPP 490
RG D+ LPP
Sbjct: 386 RGNDWKSSLPP 396
Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 51/98 (52%), Gaps = 4/98 (4%)
Query: 588 EVDKEGITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVENMHLHWKHRELVKIISKQRKI 647
EV E +T+EE L K L+ K L +GR G+ +EN+H HWK + + KI K
Sbjct: 179 EVLGEPLTKEEVDELVKATLKTKRQLNIGRDGLTHNMLENIHSHWKRKRVCKIKCKGVCT 238
Query: 648 EAALQEARTLEVESGGILVAVERVNKGYAIILYRGKNY 685
+ LE + GG ++ ++G I L+RG+NY
Sbjct: 239 VDMDNVCQQLEEKVGGKVIH----HQGGVIFLFRGRNY 272
>sp|Q657G7|CAF2P_ORYSJ CRS2-associated factor 2, chloroplastic OS=Oryza sativa subsp.
japonica GN=Os01g0323300 PE=2 SV=1
Length = 607
Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 67/127 (52%), Gaps = 9/127 (7%)
Query: 154 GRQKW-LAKNSKMNEKEKEVPTLAELKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVN 212
GR+K LA+ S + + +E L E L+ E+R L I ++L IG+ G+T ++
Sbjct: 205 GRRKLDLARVSPGDGRSREE-VLGE-PLTAAEVRDLVKPHISHNRQLNIGRDGLTHNMLE 262
Query: 213 GIHERWRHAEVVKIVCEDLCRLNMKRTHDSLERKTGGLVVWRSGSKIILYRGADY----- 267
IH WR E+ K+ C + ++MK LE K+GG V+ R G + LYRG +Y
Sbjct: 263 MIHCHWRRQEICKVRCRGVPTVDMKNLCYHLEEKSGGKVIHRVGGVVFLYRGRNYNPRTR 322
Query: 268 -KYPYFL 273
+YP L
Sbjct: 323 PRYPLML 329
Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 92/210 (43%), Gaps = 38/210 (18%)
Query: 588 EVDKEGITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVENMHLHWKHRELVKIISKQRKI 647
EV E +T E L K + L +GR G+ +E +H HW+ +E+ K+ +
Sbjct: 224 EVLGEPLTAAEVRDLVKPHISHNRQLNIGRDGLTHNMLEMIHCHWRRQEICKVRCRGVPT 283
Query: 648 EAALQEARTLEVESGGILVAVERVNKGYAIILYRGKNYE------------RPAC-LRPK 694
LE +SGG + + RV G + LYRG+NY +PA + PK
Sbjct: 284 VDMKNLCYHLEEKSGGKV--IHRV--GGVVFLYRGRNYNPRTRPRYPLMLWKPATPVYPK 339
Query: 695 TL------LTKREAMKRSLEAQRRQSLKLHVLELTRNIEKLKLQLVKDK----EANSLET 744
+ LTK EA E +RR L + +L +N + + LV+D E + L
Sbjct: 340 LIQEAPEGLTKEEAD----EMRRRGKDLLPICKLAKN--GIYIYLVRDVRDAFEGSDLVK 393
Query: 745 ID-ESILPLVKEEIG----DMQPAECMRSD 769
ID E + P ++IG D+ P + D
Sbjct: 394 IDCEGLNPSDYKKIGAKLRDLVPCVLLSFD 423
Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 45/92 (48%)
Query: 180 LSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRT 239
L+ +E +R G L K+ K GI +V + + + +++VKI CE L + K+
Sbjct: 348 LTKEEADEMRRRGKDLLPICKLAKNGIYIYLVRDVRDAFEGSDLVKIDCEGLNPSDYKKI 407
Query: 240 HDSLERKTGGLVVWRSGSKIILYRGADYKYPY 271
L +++ +I+++RG ++K Y
Sbjct: 408 GAKLRDLVPCVLLSFDNEQILMFRGKEWKSRY 439
Score = 34.7 bits (78), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 53/110 (48%), Gaps = 6/110 (5%)
Query: 378 PATVPGYRRPFRLLPYGVQPKLTNDEMTTLRRLGRPLPCHFALGRNRNLQGLAAAIVKLW 437
PAT P Y + + P G LT +E +RR G+ L L +N L + +
Sbjct: 332 PAT-PVYPKLIQEAPEG----LTKEEADEMRRRGKDLLPICKLAKNGIYIYLVRDVRDAF 386
Query: 438 EKCEIAKIAVKRGAQNTNSEMMAQELKRLTGGTLLSRDREFIVFYRGKDF 487
E ++ KI + G ++ + + +L+ L LLS D E I+ +RGK++
Sbjct: 387 EGSDLVKIDCE-GLNPSDYKKIGAKLRDLVPCVLLSFDNEQILMFRGKEW 435
>sp|Q84N48|CAF2P_MAIZE CRS2-associated factor 2, chloroplastic OS=Zea mays GN=CAF2 PE=1
SV=1
Length = 611
Score = 67.8 bits (164), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 52/100 (52%), Gaps = 6/100 (6%)
Query: 180 LSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRT 239
L+ E+R L I ++L IG+ G+T ++ IH WR E+ K+ C + ++MK
Sbjct: 234 LTPSEVRALVKPHISHNRQLNIGRDGLTHNMLEMIHCHWRRQEICKVRCRGVPTVDMKNL 293
Query: 240 HDSLERKTGGLVVWRSGSKIILYRGADY------KYPYFL 273
LE K+GG V+ R G + LYRG Y +YP L
Sbjct: 294 CYHLEEKSGGKVIHRVGGVVFLYRGRHYDPKTRPRYPLML 333
Score = 44.3 bits (103), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 48/99 (48%), Gaps = 4/99 (4%)
Query: 588 EVDKEGITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVENMHLHWKHRELVKIISKQRKI 647
EV E +T E L K + L +GR G+ +E +H HW+ +E+ K+ +
Sbjct: 228 EVLGEPLTPSEVRALVKPHISHNRQLNIGRDGLTHNMLEMIHCHWRRQEICKVRCRGVPT 287
Query: 648 EAALQEARTLEVESGGILVAVERVNKGYAIILYRGKNYE 686
LE +SGG + + RV G + LYRG++Y+
Sbjct: 288 VDMKNLCYHLEEKSGGKV--IHRV--GGVVFLYRGRHYD 322
Score = 35.0 bits (79), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 52/110 (47%), Gaps = 6/110 (5%)
Query: 378 PATVPGYRRPFRLLPYGVQPKLTNDEMTTLRRLGRPLPCHFALGRNRNLQGLAAAIVKLW 437
PAT P Y + + P G T +E +RR GR L L +N L + +
Sbjct: 336 PAT-PVYPKLIKEAPDG----FTKEEADEMRRKGRDLLPICKLAKNGIYITLVKDVRDAF 390
Query: 438 EKCEIAKIAVKRGAQNTNSEMMAQELKRLTGGTLLSRDREFIVFYRGKDF 487
E ++ KI + G ++ + + +L+ L LLS D E I+ +RGK++
Sbjct: 391 EGSDLVKIDCE-GLNPSDYKKIGAKLRDLVPCVLLSFDDEQILMHRGKEW 439
Score = 35.0 bits (79), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 44/92 (47%)
Query: 180 LSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRT 239
+ +E +R G L K+ K GI +V + + + +++VKI CE L + K+
Sbjct: 352 FTKEEADEMRRKGRDLLPICKLAKNGIYITLVKDVRDAFEGSDLVKIDCEGLNPSDYKKI 411
Query: 240 HDSLERKTGGLVVWRSGSKIILYRGADYKYPY 271
L +++ +I+++RG ++K Y
Sbjct: 412 GAKLRDLVPCVLLSFDDEQILMHRGKEWKSRY 443
>sp|Q6Z4U2|CAF1M_ORYSJ CRS2-associated factor 1, mitochondrial OS=Oryza sativa subsp.
japonica GN=Os08g0174900 PE=2 SV=1
Length = 428
Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 47/72 (65%)
Query: 196 RKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRTHDSLERKTGGLVVWRS 255
+K++ +G+ G+T ++N IH W++ E V++ C + ++M+ LE KTGGL++ R
Sbjct: 175 KKQINLGRDGLTHNMLNDIHNHWKNDEAVRVKCLGVPTVDMQNVCHQLEDKTGGLIIHRH 234
Query: 256 GSKIILYRGADY 267
G ++ILYRG Y
Sbjct: 235 GGQLILYRGRHY 246
Score = 40.4 bits (93), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
Query: 608 RMKAFLLMGRRGVFDGTVENMHLHWKHRELVKIISKQRKIEAALQEARTLEVESGGILVA 667
R K + +GR G+ + ++H HWK+ E V++ LE ++GG+++
Sbjct: 173 RTKKQINLGRDGLTHNMLNDIHNHWKNDEAVRVKCLGVPTVDMQNVCHQLEDKTGGLIIH 232
Query: 668 VERVNKGYAIILYRGKNY 685
G +ILYRG++Y
Sbjct: 233 ----RHGGQLILYRGRHY 246
Score = 35.8 bits (81), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Query: 399 LTNDEMTTLRRLGRPLPCHFALGRNRNLQGLAAAIVKLWEKCEIAKIAVKRGAQNTNSEM 458
LT +E +R+ G +P L +N L + + E+ +I K G ++
Sbjct: 277 LTVEETKEMRKKGLYVPVLTKLAKNGYYASLVPMVRDAFLTDELVRIDSK-GLPKSDYRK 335
Query: 459 MAQELKRLTGGTLLSRDREFIVFYRGKDF 487
+ +L+ L ++S D+E I+ +RGKD+
Sbjct: 336 IGVKLRDLVPCIIVSFDKEQIIVWRGKDY 364
Score = 34.7 bits (78), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 48/211 (22%), Positives = 83/211 (39%), Gaps = 29/211 (13%)
Query: 492 ASSAIEERRKHEFSTSNDSKEEPELGNRHDNSGDNTQDEFGC----TNDQKSTMHSEQKE 547
S + R K + + D L + H++ ++ C T D ++ H Q E
Sbjct: 166 VSKCQKSRTKKQINLGRDGLTHNMLNDIHNHWKNDEAVRVKCLGVPTVDMQNVCH--QLE 223
Query: 548 RRSAEVAIRRTNIRLSRVLEKKAEAEK-------LLAELEEERPEQYEVDKEGITEEERY 600
++ + I R +L + +K L E P + EG+T EE
Sbjct: 224 DKTGGLIIHRHGGQLILYRGRHYNPKKRPVIPLMLWKPAEPVYPRLIKTTIEGLTVEETK 283
Query: 601 MLRKVGLRMKAFLLMGRRGVFDGTVENMHLHWKHRELVKIISK------QRKIEAALQEA 654
+RK GL + + + G + V + + ELV+I SK RKI L++
Sbjct: 284 EMRKKGLYVPVLTKLAKNGYYASLVPMVRDAFLTDELVRIDSKGLPKSDYRKIGVKLRDL 343
Query: 655 RTLEVESGGILVAVERVNKGYAIILYRGKNY 685
I+V+ ++ II++RGK+Y
Sbjct: 344 VPC------IIVSFDKEQ----IIVWRGKDY 364
Score = 34.3 bits (77), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 934 LSNRDRLLLRKQALRMKKRPVLAVGRSNIVTGVAKAIKAHFEKYPLAIVNVKGRAKGTSV 993
L+ +R L + + + + + +GR + + I H++ V G +
Sbjct: 157 LTPAERAFLVSKCQKSRTKKQINLGRDGLTHNMLNDIHNHWKNDEAVRVKCLG-VPTVDM 215
Query: 994 QEVVAKLEEATGAVLVSQEPSKVILYRG 1021
Q V +LE+ TG +++ + ++ILYRG
Sbjct: 216 QNVCHQLEDKTGGLIIHRHGGQLILYRG 243
>sp|Q0J7J7|CAF2M_ORYSJ CRS2-associated factor 2, mitochondrial OS=Oryza sativa subsp.
japonica GN=Os08g0188000 PE=2 SV=2
Length = 366
Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 46/71 (64%)
Query: 197 KKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRTHDSLERKTGGLVVWRSG 256
+++ +GK G+T +++ IH W+ AE V+I C + L+M LE KTGG V++R+
Sbjct: 164 RQINLGKGGVTHNMIDDIHNHWKRAEAVRIKCLGVPTLDMDNICFHLEDKTGGKVIYRNI 223
Query: 257 SKIILYRGADY 267
+ +ILYRG +Y
Sbjct: 224 NILILYRGRNY 234
Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 4/72 (5%)
Query: 615 MGRRGVFDGTVENMHLHWKHRELVKIISKQRKIEAALQEARTLEVESGGILVAVERVNKG 674
+G+ GV ++++H HWK E V+I LE ++GG ++ +N
Sbjct: 168 LGKGGVTHNMIDDIHNHWKRAEAVRIKCLGVPTLDMDNICFHLEDKTGGKVI-YRNIN-- 224
Query: 675 YAIILYRGKNYE 686
+ILYRG+NY+
Sbjct: 225 -ILILYRGRNYD 235
>sp|Q9FFU1|CAF2M_ARATH CRS2-associated factor 2, mitochondrial OS=Arabidopsis thaliana
GN=At5g54890 PE=2 SV=1
Length = 358
Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 46/71 (64%)
Query: 197 KKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRTHDSLERKTGGLVVWRSG 256
+++ +GK G+T +++ IH W+ AE V+I C + L+M LE K+GG +V+R+
Sbjct: 162 RQINLGKGGVTHNMIDDIHNHWKKAEAVRIKCLGVPTLDMDNICFHLEEKSGGKIVYRNI 221
Query: 257 SKIILYRGADY 267
+ ++LYRG +Y
Sbjct: 222 NILVLYRGRNY 232
Score = 37.4 bits (85), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 4/72 (5%)
Query: 615 MGRRGVFDGTVENMHLHWKHRELVKIISKQRKIEAALQEARTLEVESGGILVAVERVNKG 674
+G+ GV ++++H HWK E V+I LE +SGG +V +N
Sbjct: 166 LGKGGVTHNMIDDIHNHWKKAEAVRIKCLGVPTLDMDNICFHLEEKSGGKIVY-RNIN-- 222
Query: 675 YAIILYRGKNYE 686
++LYRG+NY+
Sbjct: 223 -ILVLYRGRNYD 233
Score = 36.2 bits (82), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 42/93 (45%), Gaps = 3/93 (3%)
Query: 399 LTNDEMTTLRRLGRPLPC--HFALGRNRNLQGLAAAIVKLWEKCEIAKIAVKRGAQNTNS 456
LT DE+T L R C LG+ + I W+K E +I G +
Sbjct: 143 LTEDEVTELIERYRHSDCTRQINLGKGGVTHNMIDDIHNHWKKAEAVRIKCL-GVPTLDM 201
Query: 457 EMMAQELKRLTGGTLLSRDREFIVFYRGKDFLP 489
+ + L+ +GG ++ R+ +V YRG+++ P
Sbjct: 202 DNICFHLEEKSGGKIVYRNINILVLYRGRNYDP 234
>sp|Q8VYD9|CAF1M_ARATH CRS2-associated factor 1, mitochondrial OS=Arabidopsis thaliana
GN=At4g31010 PE=2 SV=1
Length = 405
Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 45/72 (62%)
Query: 196 RKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRTHDSLERKTGGLVVWRS 255
++++ +G+ G+T ++N ++ W+HAE V++ C + L+MK LE KT G VV +
Sbjct: 177 KRQVNLGRDGLTHNMLNDVYNHWKHAEAVRVKCLGVPTLDMKNVIFHLEDKTFGQVVSKH 236
Query: 256 GSKIILYRGADY 267
++LYRG +Y
Sbjct: 237 SGTLVLYRGRNY 248
Score = 41.2 bits (95), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 51/108 (47%), Gaps = 7/108 (6%)
Query: 180 LSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRT 239
LS E + +R G+ + K+ K G +V + + + +E+V+I C L R + K+
Sbjct: 279 LSIDETKAMRKKGLAVPALTKLAKNGYYGSLVPMVRDAFLVSELVRIDCLGLERKDYKKI 338
Query: 240 HDSLERKTGGLVVWRSGSKIILYRGADYK-------YPYFLADESSTD 280
L ++V +++++RG DYK Y F+ ESS D
Sbjct: 339 GAKLRDLVPCILVTFDKEQVVIWRGKDYKPPKEDDEYSSFIHRESSID 386
Score = 40.8 bits (94), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 399 LTNDEMTTLRRLGRPLPCHFALGRNRNLQGLAAAIVKLWEKCEIAKIAVKRGAQNTNSEM 458
L+ DE +R+ G +P L +N L + + E+ +I G + + +
Sbjct: 279 LSIDETKAMRKKGLAVPALTKLAKNGYYGSLVPMVRDAFLVSELVRIDC-LGLERKDYKK 337
Query: 459 MAQELKRLTGGTLLSRDREFIVFYRGKDFLPP 490
+ +L+ L L++ D+E +V +RGKD+ PP
Sbjct: 338 IGAKLRDLVPCILVTFDKEQVVIWRGKDYKPP 369
Score = 37.0 bits (84), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 55/112 (49%), Gaps = 7/112 (6%)
Query: 578 ELEEERPEQYE-VDKEGITEEERYMLRKVGLRMKAF--LLMGRRGVFDGTVENMHLHWKH 634
+LEE+R + E + +TE ER L ++ R K + +GR G+ + +++ HWKH
Sbjct: 142 KLEEKRRKVREKIQGASLTEAERKFLVELCQRNKTKRQVNLGRDGLTHNMLNDVYNHWKH 201
Query: 635 RELVKIISKQRKIEAALQEARTLEVESGGILVAVERVNKGYAIILYRGKNYE 686
E V++ LE ++ G +V+ ++LYRG+NY+
Sbjct: 202 AEAVRVKCLGVPTLDMKNVIFHLEDKTFGQVVS----KHSGTLVLYRGRNYD 249
>sp|Q9LDA9|CAF2P_ARATH CRS2-associated factor 2, chloroplastic OS=Arabidopsis thaliana
GN=At1g23400 PE=2 SV=1
Length = 564
Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 41/73 (56%)
Query: 197 KKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRTHDSLERKTGGLVVWRSG 256
+++ +G+ G T ++ IH W+ V K+ C+ + ++M LE KTGG ++ R G
Sbjct: 220 RQVNLGRDGFTHNMLELIHSHWKRRRVCKVRCKGVPTVDMNNVCRVLEEKTGGEIIHRVG 279
Query: 257 SKIILYRGADYKY 269
+ L+RG +Y Y
Sbjct: 280 GVVYLFRGRNYNY 292
Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 47/98 (47%), Gaps = 4/98 (4%)
Query: 588 EVDKEGITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVENMHLHWKHRELVKIISKQRKI 647
EV E + E+ ML K + + +GR G +E +H HWK R + K+ K
Sbjct: 197 EVLGEPLKRWEKGMLIKPHMHDNRQVNLGRDGFTHNMLELIHSHWKRRRVCKVRCKGVPT 256
Query: 648 EAALQEARTLEVESGGILVAVERVNKGYAIILYRGKNY 685
R LE ++GG + + RV G + L+RG+NY
Sbjct: 257 VDMNNVCRVLEEKTGGEI--IHRV--GGVVYLFRGRNY 290
Score = 35.8 bits (81), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/89 (22%), Positives = 43/89 (48%)
Query: 180 LSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRT 239
L+ +E R G LR K+ K G+ +V + + + + +VK+ C L + K+
Sbjct: 321 LTKEEAHEFRVKGKSLRPICKLSKNGVYVSLVKDVRDAFELSSLVKVDCPGLEPSDYKKI 380
Query: 240 HDSLERKTGGLVVWRSGSKIILYRGADYK 268
L+ +++ +I+++RG ++K
Sbjct: 381 GAKLKELVPCVLLSFDDEQILMWRGREWK 409
Score = 34.3 bits (77), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 952 RPVLAVGRSNIVTGVAKAIKAHFEKYPLAIVNVKGRAKGTSVQEVVAKLEEATGAVLVSQ 1011
RP+ + ++ + + K ++ FE L V+ G + + +++ AKL+E VL+S
Sbjct: 337 RPICKLSKNGVYVSLVKDVRDAFELSSLVKVDCPG-LEPSDYKKIGAKLKELVPCVLLSF 395
Query: 1012 EPSKVILYRG 1021
+ +++++RG
Sbjct: 396 DDEQILMWRG 405
>sp|P0AGK7|YHBY_SHIFL RNA-binding protein YhbY OS=Shigella flexneri GN=yhbY PE=4 SV=1
Length = 97
Score = 37.7 bits (86), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 178 LKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEV--VKIVCEDLCRLN 235
+ LS K+ + L+ L L+ + +G G+TEG++ I + H E+ VKI ED R
Sbjct: 1 MNLSTKQKQHLKGLAHPLKPVVLLGSNGLTEGVLAEIEQALEHHELIKVKIATED--RET 58
Query: 236 MKRTHDSLERKTGGLVVWRSGSKIILYR 263
+++ R+TG V G ++LYR
Sbjct: 59 KTLIVEAIVRETGACNVQVIGKTLVLYR 86
>sp|P0AGK4|YHBY_ECOLI RNA-binding protein YhbY OS=Escherichia coli (strain K12) GN=yhbY
PE=1 SV=1
Length = 97
Score = 37.7 bits (86), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 178 LKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEV--VKIVCEDLCRLN 235
+ LS K+ + L+ L L+ + +G G+TEG++ I + H E+ VKI ED R
Sbjct: 1 MNLSTKQKQHLKGLAHPLKPVVLLGSNGLTEGVLAEIEQALEHHELIKVKIATED--RET 58
Query: 236 MKRTHDSLERKTGGLVVWRSGSKIILYR 263
+++ R+TG V G ++LYR
Sbjct: 59 KTLIVEAIVRETGACNVQVIGKTLVLYR 86
>sp|P0AGK5|YHBY_ECOL6 RNA-binding protein YhbY OS=Escherichia coli O6:H1 (strain CFT073 /
ATCC 700928 / UPEC) GN=yhbY PE=4 SV=1
Length = 97
Score = 37.7 bits (86), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 178 LKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEV--VKIVCEDLCRLN 235
+ LS K+ + L+ L L+ + +G G+TEG++ I + H E+ VKI ED R
Sbjct: 1 MNLSTKQKQHLKGLAHPLKPVVLLGSNGLTEGVLAEIEQALEHHELIKVKIATED--RET 58
Query: 236 MKRTHDSLERKTGGLVVWRSGSKIILYR 263
+++ R+TG V G ++LYR
Sbjct: 59 KTLIVEAIVRETGACNVQVIGKTLVLYR 86
>sp|P0AGK6|YHBY_ECO57 RNA-binding protein YhbY OS=Escherichia coli O157:H7 GN=yhbY PE=4
SV=1
Length = 97
Score = 37.7 bits (86), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 178 LKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEV--VKIVCEDLCRLN 235
+ LS K+ + L+ L L+ + +G G+TEG++ I + H E+ VKI ED R
Sbjct: 1 MNLSTKQKQHLKGLAHPLKPVVLLGSNGLTEGVLAEIEQALEHHELIKVKIATED--RET 58
Query: 236 MKRTHDSLERKTGGLVVWRSGSKIILYR 263
+++ R+TG V G ++LYR
Sbjct: 59 KTLIVEAIVRETGACNVQVIGKTLVLYR 86
>sp|P54454|YQEI_BACSU Probable RNA-binding protein YqeI OS=Bacillus subtilis (strain 168)
GN=yqeI PE=4 SV=1
Length = 96
Score = 35.8 bits (81), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 42/84 (50%)
Query: 180 LSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRT 239
L+GK+ R LR+ L ++GK G+ + ++ I E E++K+ C +
Sbjct: 2 LTGKQKRFLRSKAHHLTPIFQVGKGGVNDNMIKQIAEALEARELIKVSVLQNCEEDKNDV 61
Query: 240 HDSLERKTGGLVVWRSGSKIILYR 263
++L + + +V G+ I+LY+
Sbjct: 62 AEALVKGSRSQLVQTIGNTIVLYK 85
>sp|O13817|SEC7C_SCHPO Protein transport protein sec73 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=sec73 PE=3 SV=2
Length = 1082
Score = 35.8 bits (81), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 61/136 (44%), Gaps = 8/136 (5%)
Query: 602 LRKVGLRMKAFLLMGRRGVFDGTVENMHLHWKHRELVKIISKQRKIEAALQEARTLEVES 661
LR GLRM + F + M E + I Q K + + ART++
Sbjct: 772 LRTAGLRMPVSDSYHPKRDFSCYPKYME------EELAAIEAQMKQDMEIARARTIKTRI 825
Query: 662 GGILVAVERVNKGYAIILYRGKNYERPACLRPKTLLTKREAMKRSLEAQRRQSLKLHVLE 721
+ ++ NK ++ KN A L+PKT + +A+K+ ++A + QSL L + +
Sbjct: 826 DQLETSITEFNKKLMVLQRNAKNLSTCAPLQPKTRVVILQALKK-VDA-KAQSLYLEIRK 883
Query: 722 LTRNIEKLKLQLVKDK 737
+ ++ L+ + DK
Sbjct: 884 MESQLQVLRFESDLDK 899
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.130 0.368
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 397,015,645
Number of Sequences: 539616
Number of extensions: 17401546
Number of successful extensions: 49266
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 263
Number of HSP's that attempted gapping in prelim test: 48234
Number of HSP's gapped (non-prelim): 1221
length of query: 1076
length of database: 191,569,459
effective HSP length: 128
effective length of query: 948
effective length of database: 122,498,611
effective search space: 116128683228
effective search space used: 116128683228
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 67 (30.4 bits)