BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001444
(1076 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3PV5|A Chain A, Structure Of Legionella Fallonii Degq (N189gP190G VARIANT)
pdb|3PV5|B Chain B, Structure Of Legionella Fallonii Degq (N189gP190G VARIANT)
pdb|3PV5|C Chain C, Structure Of Legionella Fallonii Degq (N189gP190G VARIANT)
pdb|3PV5|D Chain D, Structure Of Legionella Fallonii Degq (N189gP190G VARIANT)
Length = 451
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 63/311 (20%), Positives = 123/311 (39%), Gaps = 41/311 (13%)
Query: 68 SYATGFVVDKRRGIILTNRHVVKPGPVVAEAMFVNREEIPVYPIYRDPVHDFGFFRYDPS 127
S +G ++D G+I+TN HV++ ++ + R + I D D + D
Sbjct: 77 SIGSGVIIDPNNGVIITNDHVIRNASLITVTLQDGRR-LKARLIGGDSETDLAVLKIDAK 135
Query: 128 AIQFL---NYDEIPLAPEAACVGLEIRVVGNDSGEKVSILAGTLARLDRDAPHYKKDGYN 184
++ L + D++ + +G + N G S G ++ L R +G
Sbjct: 136 NLKSLVIGDSDKLEVGDFVVAIGNPFGL--NSFGNSQSATFGIVSALKRS--DLNIEGVE 191
Query: 185 DFNTFYMQAAXXXXXXXXXXPVIDWQGRAVALNXXXXX----XXXXXFFLPLERVVRALR 240
+F +Q +++ +G + +N F +P+ V
Sbjct: 192 NF----IQTDAAIGGGNSGGALVNAKGELIGINTAILSPYGGNVGIGFAIPINMV----- 242
Query: 241 FLQERRDCNIHNWEAVSIPRGTLQVTFVHKGFDETRRLGLQSATEQMVRHASPPGETGLL 300
+D + SI RG + + FV Q T ++ + P +
Sbjct: 243 -----KDVAQQIIKFGSIHRGLMGI-FV------------QHLTPELAQAMGYPEDFQGA 284
Query: 301 VVDSVVPGGPAHLR-LEPGDVLVRVNGEVITQFLKLETLLD-DGVDKNIELLIERGGISM 358
+V V P PA L L+ GD++ ++N ITQ +++T + V +++++ER +
Sbjct: 285 LVSQVNPNSPAELAGLKAGDIITQINDTKITQATQVKTTISLLRVGSTVKIIVERDNKPL 344
Query: 359 TVNLVVQDLHS 369
T++ VV D+ S
Sbjct: 345 TLSAVVTDIKS 355
>pdb|3PV2|A Chain A, Structure Of Legionella Fallonii Degq (Wt)
pdb|3PV2|B Chain B, Structure Of Legionella Fallonii Degq (Wt)
pdb|3PV2|C Chain C, Structure Of Legionella Fallonii Degq (Wt)
pdb|3PV2|D Chain D, Structure Of Legionella Fallonii Degq (Wt)
Length = 451
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 63/311 (20%), Positives = 123/311 (39%), Gaps = 41/311 (13%)
Query: 68 SYATGFVVDKRRGIILTNRHVVKPGPVVAEAMFVNREEIPVYPIYRDPVHDFGFFRYDPS 127
S +G ++D G+I+TN HV++ ++ + R + I D D + D
Sbjct: 77 SIGSGVIIDPNNGVIITNDHVIRNASLITVTLQDGRR-LKARLIGGDSETDLAVLKIDAK 135
Query: 128 AIQFL---NYDEIPLAPEAACVGLEIRVVGNDSGEKVSILAGTLARLDRDAPHYKKDGYN 184
++ L + D++ + +G + N G S G ++ L R +G
Sbjct: 136 NLKSLVIGDSDKLEVGDFVVAIGNPFGL--NSFGNSQSATFGIVSALKRS--DLNIEGVE 191
Query: 185 DFNTFYMQAAXXXXXXXXXXPVIDWQGRAVALNXXXXX----XXXXXFFLPLERVVRALR 240
+F +Q +++ +G + +N F +P+ V
Sbjct: 192 NF----IQTDAAINPGNSGGALVNAKGELIGINTAILSPYGGNVGIGFAIPINMV----- 242
Query: 241 FLQERRDCNIHNWEAVSIPRGTLQVTFVHKGFDETRRLGLQSATEQMVRHASPPGETGLL 300
+D + SI RG + + FV Q T ++ + P +
Sbjct: 243 -----KDVAQQIIKFGSIHRGLMGI-FV------------QHLTPELAQAMGYPEDFQGA 284
Query: 301 VVDSVVPGGPAHLR-LEPGDVLVRVNGEVITQFLKLETLLD-DGVDKNIELLIERGGISM 358
+V V P PA L L+ GD++ ++N ITQ +++T + V +++++ER +
Sbjct: 285 LVSQVNPNSPAELAGLKAGDIITQINDTKITQATQVKTTISLLRVGSTVKIIVERDNKPL 344
Query: 359 TVNLVVQDLHS 369
T++ VV D+ S
Sbjct: 345 TLSAVVTDIKS 355
>pdb|3PV3|A Chain A, Structure Of Legionella Fallonii Degq (S193a Variant)
pdb|3PV3|B Chain B, Structure Of Legionella Fallonii Degq (S193a Variant)
pdb|3PV3|C Chain C, Structure Of Legionella Fallonii Degq (S193a Variant)
pdb|3PV3|D Chain D, Structure Of Legionella Fallonii Degq (S193a Variant)
Length = 451
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 63/311 (20%), Positives = 123/311 (39%), Gaps = 41/311 (13%)
Query: 68 SYATGFVVDKRRGIILTNRHVVKPGPVVAEAMFVNREEIPVYPIYRDPVHDFGFFRYDPS 127
S +G ++D G+I+TN HV++ ++ + R + I D D + D
Sbjct: 77 SIGSGVIIDPNNGVIITNDHVIRNASLITVTLQDGRR-LKARLIGGDSETDLAVLKIDAK 135
Query: 128 AIQFL---NYDEIPLAPEAACVGLEIRVVGNDSGEKVSILAGTLARLDRDAPHYKKDGYN 184
++ L + D++ + +G + N G S G ++ L R +G
Sbjct: 136 NLKSLVIGDSDKLEVGDFVVAIGNPFGL--NSFGNSQSATFGIVSALKRS--DLNIEGVE 191
Query: 185 DFNTFYMQAAXXXXXXXXXXPVIDWQGRAVALNXXXXX----XXXXXFFLPLERVVRALR 240
+F +Q +++ +G + +N F +P+ V
Sbjct: 192 NF----IQTDAAINPGNAGGALVNAKGELIGINTAILSPYGGNVGIGFAIPINMV----- 242
Query: 241 FLQERRDCNIHNWEAVSIPRGTLQVTFVHKGFDETRRLGLQSATEQMVRHASPPGETGLL 300
+D + SI RG + + FV Q T ++ + P +
Sbjct: 243 -----KDVAQQIIKFGSIHRGLMGI-FV------------QHLTPELAQAMGYPEDFQGA 284
Query: 301 VVDSVVPGGPAHLR-LEPGDVLVRVNGEVITQFLKLETLLD-DGVDKNIELLIERGGISM 358
+V V P PA L L+ GD++ ++N ITQ +++T + V +++++ER +
Sbjct: 285 LVSQVNPNSPAELAGLKAGDIITQINDTKITQATQVKTTISLLRVGSTVKIIVERDNKPL 344
Query: 359 TVNLVVQDLHS 369
T++ VV D+ S
Sbjct: 345 TLSAVVTDIKS 355
>pdb|3PV4|A Chain A, Structure Of Legionella Fallonii Degq (Delta-Pdz2 Variant)
Length = 354
Score = 37.7 bits (86), Expect = 0.033, Method: Composition-based stats.
Identities = 62/309 (20%), Positives = 122/309 (39%), Gaps = 41/309 (13%)
Query: 68 SYATGFVVDKRRGIILTNRHVVKPGPVVAEAMFVNREEIPVYPIYRDPVHDFGFFRYDPS 127
S +G ++D G+I+TN HV++ ++ + R + I D D + D
Sbjct: 77 SIGSGVIIDPNNGVIITNDHVIRNASLITVTLQDGRR-LKARLIGGDSETDLAVLKIDAK 135
Query: 128 AIQFL---NYDEIPLAPEAACVGLEIRVVGNDSGEKVSILAGTLARLDRDAPHYKKDGYN 184
++ L + D++ + +G + N G S G ++ L R +G
Sbjct: 136 NLKSLVIGDSDKLEVGDFVVAIGNPFGL--NSFGNSQSATFGIVSALKRS--DLNIEGVE 191
Query: 185 DFNTFYMQAAXXXXXXXXXXPVIDWQGRAVALNXXXXX----XXXXXFFLPLERVVRALR 240
+F +Q +++ +G + +N F +P+ V
Sbjct: 192 NF----IQTDAAINPGNSGGALVNAKGELIGINTAILSPYGGNVGIGFAIPINMV----- 242
Query: 241 FLQERRDCNIHNWEAVSIPRGTLQVTFVHKGFDETRRLGLQSATEQMVRHASPPGETGLL 300
+D + SI RG + + FV Q T ++ + P +
Sbjct: 243 -----KDVAQQIIKFGSIHRGLMGI-FV------------QHLTPELAQAMGYPEDFQGA 284
Query: 301 VVDSVVPGGPAHLR-LEPGDVLVRVNGEVITQFLKLETLLD-DGVDKNIELLIERGGISM 358
+V V P PA L L+ GD++ ++N ITQ +++T + V +++++ER +
Sbjct: 285 LVSQVNPNSPAELAGLKAGDIITQINDTKITQATQVKTTISLLRVGSTVKIIVERDNKPL 344
Query: 359 TVNLVVQDL 367
T++ VV D+
Sbjct: 345 TLSAVVTDI 353
>pdb|3ID2|A Chain A, Crystal Structure Of Rsep Pdz2 Domain
pdb|3ID2|B Chain B, Crystal Structure Of Rsep Pdz2 Domain
Length = 90
Score = 37.0 bits (84), Expect = 0.062, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Query: 301 VVDSVVPGGPA-HLRLEPGDVLVRVNGEVITQFLKLETLLDDGVDKNIELLIERGGISMT 359
V+++V P A L+ GD +V+V+G+ +TQ++ L+ D K++ L IER G ++
Sbjct: 6 VLENVQPNSAASKAGLQAGDRIVKVDGQPLTQWVTFVMLVRDNPGKSLALEIERQGSPLS 65
Query: 360 VNLV 363
+ L+
Sbjct: 66 LTLI 69
>pdb|3ID3|A Chain A, Crystal Structure Of Rsep Pdz2 I304a Domain
pdb|3ID3|B Chain B, Crystal Structure Of Rsep Pdz2 I304a Domain
Length = 89
Score = 37.0 bits (84), Expect = 0.066, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Query: 301 VVDSVVPGGPA-HLRLEPGDVLVRVNGEVITQFLKLETLLDDGVDKNIELLIERGGISMT 359
V+++V P A L+ GD +V+V+G+ +TQ++ L+ D K++ L IER G ++
Sbjct: 5 VLENVQPNSAASKAGLQAGDRIVKVDGQPLTQWVTFVMLVRDNPGKSLALEIERQGSPLS 64
Query: 360 VNLV 363
+ L+
Sbjct: 65 LTLI 68
>pdb|3ID4|A Chain A, Crystal Structure Of Rsep Pdz2 Domain Fused Gkaspv Peptide
Length = 93
Score = 36.6 bits (83), Expect = 0.071, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Query: 301 VVDSVVPGGPA-HLRLEPGDVLVRVNGEVITQFLKLETLLDDGVDKNIELLIERGGISMT 359
V+++V P A L+ GD +V+V+G+ +TQ++ L+ D K++ L IER G ++
Sbjct: 5 VLENVQPNSAASKAGLQAGDRIVKVDGQPLTQWVTFVMLVRDNPGKSLALEIERQGSPLS 64
Query: 360 VNLV 363
+ L+
Sbjct: 65 LTLI 68
>pdb|4A8A|A Chain A, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer In
Complex With Lysozyme
pdb|4A8A|B Chain B, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer In
Complex With Lysozyme
pdb|4A8A|C Chain C, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer In
Complex With Lysozyme
pdb|4A8A|D Chain D, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer In
Complex With Lysozyme
pdb|4A8A|E Chain E, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer In
Complex With Lysozyme
pdb|4A8A|F Chain F, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer In
Complex With Lysozyme
pdb|4A8A|G Chain G, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer In
Complex With Lysozyme
pdb|4A8A|H Chain H, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer In
Complex With Lysozyme
pdb|4A8A|I Chain I, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer In
Complex With Lysozyme
pdb|4A8A|J Chain J, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer In
Complex With Lysozyme
pdb|4A8A|K Chain K, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer In
Complex With Lysozyme
pdb|4A8A|L Chain L, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer In
Complex With Lysozyme
pdb|4A8B|A Chain A, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer In
Complex With Lysozymes
pdb|4A8B|B Chain B, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer In
Complex With Lysozymes
pdb|4A8B|C Chain C, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer In
Complex With Lysozymes
pdb|4A8B|D Chain D, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer In
Complex With Lysozymes
pdb|4A8B|E Chain E, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer In
Complex With Lysozymes
pdb|4A8B|F Chain F, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer In
Complex With Lysozymes
pdb|4A8B|G Chain G, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer In
Complex With Lysozymes
pdb|4A8B|H Chain H, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer In
Complex With Lysozymes
pdb|4A8B|I Chain I, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer In
Complex With Lysozymes
pdb|4A8B|J Chain J, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer In
Complex With Lysozymes
pdb|4A8B|K Chain K, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer In
Complex With Lysozymes
pdb|4A8B|L Chain L, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer In
Complex With Lysozymes
pdb|4A8C|A Chain A, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer In
Complex With A Binding Peptide
pdb|4A8C|B Chain B, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer In
Complex With A Binding Peptide
pdb|4A8C|C Chain C, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer In
Complex With A Binding Peptide
pdb|4A8C|D Chain D, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer In
Complex With A Binding Peptide
pdb|4A8C|E Chain E, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer In
Complex With A Binding Peptide
pdb|4A8C|F Chain F, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer In
Complex With A Binding Peptide
pdb|4A8C|G Chain G, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer In
Complex With A Binding Peptide
pdb|4A8C|H Chain H, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer In
Complex With A Binding Peptide
pdb|4A8C|I Chain I, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer In
Complex With A Binding Peptide
pdb|4A8C|J Chain J, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer In
Complex With A Binding Peptide
pdb|4A8C|K Chain K, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer In
Complex With A Binding Peptide
pdb|4A8C|L Chain L, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer In
Complex With A Binding Peptide
pdb|4A9G|A Chain A, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer In
Complex With Beta-Casein
pdb|4A9G|B Chain B, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer In
Complex With Beta-Casein
pdb|4A9G|C Chain C, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer In
Complex With Beta-Casein
pdb|4A9G|D Chain D, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer In
Complex With Beta-Casein
pdb|4A9G|E Chain E, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer In
Complex With Beta-Casein
pdb|4A9G|F Chain F, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer In
Complex With Beta-Casein
pdb|4A9G|G Chain G, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer In
Complex With Beta-Casein
pdb|4A9G|H Chain H, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer In
Complex With Beta-Casein
pdb|4A9G|I Chain I, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer In
Complex With Beta-Casein
pdb|4A9G|J Chain J, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer In
Complex With Beta-Casein
pdb|4A9G|K Chain K, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer In
Complex With Beta-Casein
pdb|4A9G|L Chain L, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer In
Complex With Beta-Casein
pdb|4A9G|M Chain M, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer In
Complex With Beta-Casein
pdb|4A9G|N Chain N, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer In
Complex With Beta-Casein
pdb|4A9G|O Chain O, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer In
Complex With Beta-Casein
pdb|4A9G|P Chain P, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer In
Complex With Beta-Casein
pdb|4A9G|Q Chain Q, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer In
Complex With Beta-Casein
pdb|4A9G|R Chain R, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer In
Complex With Beta-Casein
pdb|4A9G|S Chain S, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer In
Complex With Beta-Casein
pdb|4A9G|T Chain T, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer In
Complex With Beta-Casein
pdb|4A9G|U Chain U, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer In
Complex With Beta-Casein
pdb|4A9G|V Chain V, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer In
Complex With Beta-Casein
pdb|4A9G|W Chain W, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer In
Complex With Beta-Casein
pdb|4A9G|Y Chain Y, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer In
Complex With Beta-Casein
Length = 436
Score = 35.4 bits (80), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 58/134 (43%), Gaps = 10/134 (7%)
Query: 874 CLAGS-KAENMLEQGDMMLAINKQPVTCFHDIENACQALDKDGEDNGKLDITIFRQGREI 932
L GS A+ ++ GD++ ++N +P+ F ++ + E K+ + + R G+ +
Sbjct: 270 VLPGSGSAKAGVKAGDIITSLNGKPLNSFAELRSRIATT----EPGTKVKLGLLRNGKPL 325
Query: 933 ELQVGTDVRDGNGTTRVINWCGCIVQDPHPAVRALGFLPEEGHGVYVARWCHGSPVHRYG 992
E++V D +T I A + G L + G G+ + GSP + G
Sbjct: 326 EVEVTLDT-----STSSSASAEMITPALEGATLSDGQLKDGGKGIKIDEVVKGSPAAQAG 380
Query: 993 LYALQWIVEINGKR 1006
L I+ +N R
Sbjct: 381 LQKDDVIIGVNRDR 394
>pdb|3OTP|A Chain A, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|B Chain B, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|C Chain C, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|D Chain D, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|E Chain E, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|F Chain F, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
Length = 459
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 58/305 (19%), Positives = 112/305 (36%), Gaps = 42/305 (13%)
Query: 68 SYATGFVVDKRRGIILTNRHVVKPGPVVAEAMFVNREEIPVYPIYRDPVHDFGFFR-YDP 126
+ +G ++D +G ++TN HVV V+ + + + + +DP D + +P
Sbjct: 86 ALGSGVIIDADKGYVVTNNHVVDNATVI-KVQLSDGRKFDAKMVGKDPRSDIALIQIQNP 144
Query: 127 SAIQFLNYDEIPLA-PEAACVGLEIRVVGNDSGEKVSILAGTLARLDRDAPHYKKDGYND 185
N I +A +A VG +GN G ++ +G ++ L R + Y +
Sbjct: 145 K-----NLTAIKMADSDALRVGDYTVAIGNPFGLGETVTSGIVSALGRSG--LNAENYEN 197
Query: 186 FNTFYMQAAXXXXXXXXXXPVIDWQGRAVALNXXXXX----XXXXXFFLPLERVVRALRF 241
F +Q +++ G + +N F +P V
Sbjct: 198 F----IQTDAAINRGNAGGALVNLNGELIGINTAILAPDGGNIGIGFAIPSNMV------ 247
Query: 242 LQERRDCNIHNWEAVSIPRGTLQVTFVHKGFDETRRLGLQSATEQMVRHASPPGETGLLV 301
++ E + RG L + +G + +E + + + G V
Sbjct: 248 ----KNLTSQMVEYGQVKRGELGI------------MGTELNSE-LAKAMKVDAQRGAFV 290
Query: 302 VDSVVPGGPAHLRLEPGDVLVRVNGEVITQFLKLETLLDDG-VDKNIELLIERGGISMTV 360
+ A ++ GDV+ +NG+ I+ F L + V + L + R G + V
Sbjct: 291 SQVLPNSSAAKAGIKAGDVITSLNGKPISSFAALRAQVGTMPVGSKLTLGLLRDGKQVNV 350
Query: 361 NLVVQ 365
NL +Q
Sbjct: 351 NLELQ 355
>pdb|3MH4|A Chain A, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
pdb|3MH4|B Chain B, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
Length = 456
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 58/305 (19%), Positives = 112/305 (36%), Gaps = 42/305 (13%)
Query: 68 SYATGFVVDKRRGIILTNRHVVKPGPVVAEAMFVNREEIPVYPIYRDPVHDFGFFR-YDP 126
+ +G ++D +G ++TN HVV V+ + + + + +DP D + +P
Sbjct: 86 ALGSGVIIDADKGYVVTNNHVVDNATVI-KVQLSDGRKFDAKMVGKDPRSDIALIQIQNP 144
Query: 127 SAIQFLNYDEIPLA-PEAACVGLEIRVVGNDSGEKVSILAGTLARLDRDAPHYKKDGYND 185
N I +A +A VG +GN G ++ +G ++ L R + Y +
Sbjct: 145 K-----NLTAIKMADSDALRVGDYTVAIGNPFGLGETVTSGIVSALGRSG--LNAENYEN 197
Query: 186 FNTFYMQAAXXXXXXXXXXPVIDWQGRAVALNXXXXX----XXXXXFFLPLERVVRALRF 241
F +Q +++ G + +N F +P V
Sbjct: 198 F----IQTDAAINRGNAGGALVNLNGELIGINTAILAPDGGNIGIGFAIPSNMV------ 247
Query: 242 LQERRDCNIHNWEAVSIPRGTLQVTFVHKGFDETRRLGLQSATEQMVRHASPPGETGLLV 301
++ E + RG L + +G + +E + + + G V
Sbjct: 248 ----KNLTSQMVEYGQVKRGELGI------------MGTELNSE-LAKAMKVDAQRGAFV 290
Query: 302 VDSVVPGGPAHLRLEPGDVLVRVNGEVITQFLKLETLLDDG-VDKNIELLIERGGISMTV 360
+ A ++ GDV+ +NG+ I+ F L + V + L + R G + V
Sbjct: 291 SQVLPNSSAAKAGIKAGDVITSLNGKPISSFAALRAQVGTMPVGSKLTLGLLRDGKQVNV 350
Query: 361 NLVVQ 365
NL +Q
Sbjct: 351 NLELQ 355
>pdb|3MH5|A Chain A, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
pdb|3MH5|B Chain B, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
pdb|3MH6|A Chain A, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
Length = 456
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 58/305 (19%), Positives = 112/305 (36%), Gaps = 42/305 (13%)
Query: 68 SYATGFVVDKRRGIILTNRHVVKPGPVVAEAMFVNREEIPVYPIYRDPVHDFGFFR-YDP 126
+ +G ++D +G ++TN HVV V+ + + + + +DP D + +P
Sbjct: 86 ALGSGVIIDADKGYVVTNNHVVDNATVI-KVQLSDGRKFDAKMVGKDPRSDIALIQIQNP 144
Query: 127 SAIQFLNYDEIPLA-PEAACVGLEIRVVGNDSGEKVSILAGTLARLDRDAPHYKKDGYND 185
N I +A +A VG +GN G ++ +G ++ L R + Y +
Sbjct: 145 K-----NLTAIKMADSDALRVGDYTVAIGNPFGLGETVTSGIVSALGRSG--LNAENYEN 197
Query: 186 FNTFYMQAAXXXXXXXXXXPVIDWQGRAVALNXXXXX----XXXXXFFLPLERVVRALRF 241
F +Q +++ G + +N F +P V
Sbjct: 198 F----IQTDAAINRGNSGGALVNLNGELIGINTAILAPDGGNIGIGFAIPSNMV------ 247
Query: 242 LQERRDCNIHNWEAVSIPRGTLQVTFVHKGFDETRRLGLQSATEQMVRHASPPGETGLLV 301
++ E + RG L + +G + +E + + + G V
Sbjct: 248 ----KNLTSQMVEYGQVKRGELGI------------MGTELNSE-LAKAMKVDAQRGAFV 290
Query: 302 VDSVVPGGPAHLRLEPGDVLVRVNGEVITQFLKLETLLDDG-VDKNIELLIERGGISMTV 360
+ A ++ GDV+ +NG+ I+ F L + V + L + R G + V
Sbjct: 291 SQVLPNSSAAKAGIKAGDVITSLNGKPISSFAALRAQVGTMPVGSKLTLGLLRDGKQVNV 350
Query: 361 NLVVQ 365
NL +Q
Sbjct: 351 NLELQ 355
>pdb|2ZLE|A Chain A, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|B Chain B, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|C Chain C, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|E Chain E, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|F Chain F, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|G Chain G, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|H Chain H, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|I Chain I, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|J Chain J, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|K Chain K, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|L Chain L, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|M Chain M, Cryo-Em Structure Of Degp12OMP
Length = 448
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 58/305 (19%), Positives = 112/305 (36%), Gaps = 42/305 (13%)
Query: 68 SYATGFVVDKRRGIILTNRHVVKPGPVVAEAMFVNREEIPVYPIYRDPVHDFGFFR-YDP 126
+ +G ++D +G ++TN HVV V+ + + + + +DP D + +P
Sbjct: 86 ALGSGVIIDADKGYVVTNNHVVDNATVI-KVQLSDGRKFDAKMVGKDPRSDIALIQIQNP 144
Query: 127 SAIQFLNYDEIPLA-PEAACVGLEIRVVGNDSGEKVSILAGTLARLDRDAPHYKKDGYND 185
N I +A +A VG +GN G ++ +G ++ L R + Y +
Sbjct: 145 K-----NLTAIKMADSDALRVGDYTVAIGNPFGLGETVTSGIVSALGRSG--LNAENYEN 197
Query: 186 FNTFYMQAAXXXXXXXXXXPVIDWQGRAVALNXXXXX----XXXXXFFLPLERVVRALRF 241
F +Q +++ G + +N F +P V
Sbjct: 198 F----IQTDAAINRGNSGGALVNLNGELIGINTAILAPDGGNIGIGFAIPSNMV------ 247
Query: 242 LQERRDCNIHNWEAVSIPRGTLQVTFVHKGFDETRRLGLQSATEQMVRHASPPGETGLLV 301
++ E + RG L + +G + +E + + + G V
Sbjct: 248 ----KNLTSQMVEYGQVKRGELGI------------MGTELNSE-LAKAMKVDAQRGAFV 290
Query: 302 VDSVVPGGPAHLRLEPGDVLVRVNGEVITQFLKLETLLDDG-VDKNIELLIERGGISMTV 360
+ A ++ GDV+ +NG+ I+ F L + V + L + R G + V
Sbjct: 291 SQVLPNSSAAKAGIKAGDVITSLNGKPISSFAALRAQVGTMPVGSKLTLGLLRDGKQVNV 350
Query: 361 NLVVQ 365
NL +Q
Sbjct: 351 NLELQ 355
>pdb|4A8D|A Chain A, Degp Dodecamer With Bound Omp
pdb|4A8D|B Chain B, Degp Dodecamer With Bound Omp
pdb|4A8D|C Chain C, Degp Dodecamer With Bound Omp
pdb|4A8D|D Chain D, Degp Dodecamer With Bound Omp
pdb|4A8D|E Chain E, Degp Dodecamer With Bound Omp
pdb|4A8D|F Chain F, Degp Dodecamer With Bound Omp
pdb|4A8D|G Chain G, Degp Dodecamer With Bound Omp
pdb|4A8D|H Chain H, Degp Dodecamer With Bound Omp
pdb|4A8D|I Chain I, Degp Dodecamer With Bound Omp
pdb|4A8D|J Chain J, Degp Dodecamer With Bound Omp
pdb|4A8D|K Chain K, Degp Dodecamer With Bound Omp
pdb|4A8D|L Chain L, Degp Dodecamer With Bound Omp
Length = 448
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 58/305 (19%), Positives = 112/305 (36%), Gaps = 42/305 (13%)
Query: 68 SYATGFVVDKRRGIILTNRHVVKPGPVVAEAMFVNREEIPVYPIYRDPVHDFGFFR-YDP 126
+ +G ++D +G ++TN HVV V+ + + + + +DP D + +P
Sbjct: 86 ALGSGVIIDADKGYVVTNNHVVDNATVI-KVQLSDGRKFDAKMVGKDPRSDIALIQIQNP 144
Query: 127 SAIQFLNYDEIPLA-PEAACVGLEIRVVGNDSGEKVSILAGTLARLDRDAPHYKKDGYND 185
N I +A +A VG +GN G ++ +G ++ L R + Y +
Sbjct: 145 K-----NLTAIKMADSDALRVGDYTVAIGNPFGLGETVTSGIVSALGRSG--LNAENYEN 197
Query: 186 FNTFYMQAAXXXXXXXXXXPVIDWQGRAVALNXXXXX----XXXXXFFLPLERVVRALRF 241
F +Q +++ G + +N F +P V
Sbjct: 198 F----IQTDAAINRGNAGGALVNLNGELIGINTAILAPDGGNIGIGFAIPSNMV------ 247
Query: 242 LQERRDCNIHNWEAVSIPRGTLQVTFVHKGFDETRRLGLQSATEQMVRHASPPGETGLLV 301
++ E + RG L + +G + +E + + + G V
Sbjct: 248 ----KNLTSQMVEYGQVKRGELGI------------MGTELNSE-LAKAMKVDAQRGAFV 290
Query: 302 VDSVVPGGPAHLRLEPGDVLVRVNGEVITQFLKLETLLDDG-VDKNIELLIERGGISMTV 360
+ A ++ GDV+ +NG+ I+ F L + V + L + R G + V
Sbjct: 291 SQVLPNSSAAKAGIKAGDVITSLNGKPISSFAALRAQVGTMPVGSKLTLGLLRDGKQVNV 350
Query: 361 NLVVQ 365
NL +Q
Sbjct: 351 NLELQ 355
>pdb|3MH7|A Chain A, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
Length = 456
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 53/304 (17%), Positives = 107/304 (35%), Gaps = 40/304 (13%)
Query: 68 SYATGFVVDKRRGIILTNRHVVKPGPVVAEAMFVNREEIPVYPIYRDPVHDFGFFR-YDP 126
+ +G ++D +G ++TN HVV V+ + + + + +DP D + +P
Sbjct: 86 ALGSGVIIDADKGYVVTNNHVVDNATVI-KVQLSDGRKFDAKXVGKDPRSDIALIQIQNP 144
Query: 127 SAIQFLNYDEIPLAPEAACVGLEIRVVGNDSGEKVSILAGTLARLDRDAPHYKKDGYNDF 186
+ + + +A VG +GN G ++ +G ++ L R + Y +F
Sbjct: 145 KNLTAIKXAD----SDALRVGDYTVAIGNPFGLGETVTSGIVSALGRSG--LNAENYENF 198
Query: 187 NTFYMQAAXXXXXXXXXXPVIDWQGRAVALNXXXXX----XXXXXFFLPLERVVRALRFL 242
+Q +++ G + +N F +P V
Sbjct: 199 ----IQTDAAINRGNAGGALVNLNGELIGINTAILAPDGGNIGIGFAIPSNXV------- 247
Query: 243 QERRDCNIHNWEAVSIPRGTLQVTFVHKGFDETRRLGLQSATEQMVRHASPPGETGLLVV 302
++ E + RG L + ++ + + G V
Sbjct: 248 ---KNLTSQXVEYGQVKRGELGIXGTE-------------LNSELAKAXKVDAQRGAFVS 291
Query: 303 DSVVPGGPAHLRLEPGDVLVRVNGEVITQFLKLETLLDDG-VDKNIELLIERGGISMTVN 361
+ A ++ GDV+ +NG+ I+ F L + V + L + R G + VN
Sbjct: 292 QVLPNSSAAKAGIKAGDVITSLNGKPISSFAALRAQVGTXPVGSKLTLGLLRDGKQVNVN 351
Query: 362 LVVQ 365
L +Q
Sbjct: 352 LELQ 355
>pdb|1KY9|A Chain A, Crystal Structure Of Degp (Htra)
pdb|1KY9|B Chain B, Crystal Structure Of Degp (Htra)
pdb|3OU0|A Chain A, Re-Refined 3cs0
Length = 448
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 53/304 (17%), Positives = 107/304 (35%), Gaps = 40/304 (13%)
Query: 68 SYATGFVVDKRRGIILTNRHVVKPGPVVAEAMFVNREEIPVYPIYRDPVHDFGFFR-YDP 126
+ +G ++D +G ++TN HVV V+ + + + + +DP D + +P
Sbjct: 86 ALGSGVIIDADKGYVVTNNHVVDNATVI-KVQLSDGRKFDAKXVGKDPRSDIALIQIQNP 144
Query: 127 SAIQFLNYDEIPLAPEAACVGLEIRVVGNDSGEKVSILAGTLARLDRDAPHYKKDGYNDF 186
+ + + +A VG +GN G ++ +G ++ L R + Y +F
Sbjct: 145 KNLTAIKXAD----SDALRVGDYTVAIGNPFGLGETVTSGIVSALGRSG--LNAENYENF 198
Query: 187 NTFYMQAAXXXXXXXXXXPVIDWQGRAVALNXXXXX----XXXXXFFLPLERVVRALRFL 242
+Q +++ G + +N F +P V
Sbjct: 199 ----IQTDAAINRGNAGGALVNLNGELIGINTAILAPDGGNIGIGFAIPSNXV------- 247
Query: 243 QERRDCNIHNWEAVSIPRGTLQVTFVHKGFDETRRLGLQSATEQMVRHASPPGETGLLVV 302
++ E + RG L + ++ + + G V
Sbjct: 248 ---KNLTSQXVEYGQVKRGELGIXGTE-------------LNSELAKAXKVDAQRGAFVS 291
Query: 303 DSVVPGGPAHLRLEPGDVLVRVNGEVITQFLKLETLLDDG-VDKNIELLIERGGISMTVN 361
+ A ++ GDV+ +NG+ I+ F L + V + L + R G + VN
Sbjct: 292 QVLPNSSAAKAGIKAGDVITSLNGKPISSFAALRAQVGTXPVGSKLTLGLLRDGKQVNVN 351
Query: 362 LVVQ 365
L +Q
Sbjct: 352 LELQ 355
>pdb|3CS0|A Chain A, Crystal Structure Of Degp24
Length = 448
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 53/304 (17%), Positives = 107/304 (35%), Gaps = 40/304 (13%)
Query: 68 SYATGFVVDKRRGIILTNRHVVKPGPVVAEAMFVNREEIPVYPIYRDPVHDFGFFR-YDP 126
+ +G ++D +G ++TN HVV V+ + + + + +DP D + +P
Sbjct: 86 ALGSGVIIDADKGYVVTNNHVVDNATVI-KVQLSDGRKFDAKXVGKDPRSDIALIQIQNP 144
Query: 127 SAIQFLNYDEIPLAPEAACVGLEIRVVGNDSGEKVSILAGTLARLDRDAPHYKKDGYNDF 186
+ + + +A VG +GN G ++ +G ++ L R + Y +F
Sbjct: 145 KNLTAIKXAD----SDALRVGDYTVAIGNPFGLGETVTSGIVSALGRSG--LNAENYENF 198
Query: 187 NTFYMQAAXXXXXXXXXXPVIDWQGRAVALNXXXXX----XXXXXFFLPLERVVRALRFL 242
+Q +++ G + +N F +P V
Sbjct: 199 ----IQTDAAINRGNSGGALVNLNGELIGINTAILAPDGGNIGIGFAIPSNXV------- 247
Query: 243 QERRDCNIHNWEAVSIPRGTLQVTFVHKGFDETRRLGLQSATEQMVRHASPPGETGLLVV 302
++ E + RG L + ++ + + G V
Sbjct: 248 ---KNLTSQXVEYGQVKRGELGIXGTE-------------LNSELAKAXKVDAQRGAFVS 291
Query: 303 DSVVPGGPAHLRLEPGDVLVRVNGEVITQFLKLETLLDDG-VDKNIELLIERGGISMTVN 361
+ A ++ GDV+ +NG+ I+ F L + V + L + R G + VN
Sbjct: 292 QVLPNSSAAKAGIKAGDVITSLNGKPISSFAALRAQVGTXPVGSKLTLGLLRDGKQVNVN 351
Query: 362 LVVQ 365
L +Q
Sbjct: 352 LELQ 355
>pdb|1Y8T|A Chain A, Crystal Structure Of Rv0983 From Mycobacterium
Tuberculosis- Proteolytically Active Form
pdb|1Y8T|B Chain B, Crystal Structure Of Rv0983 From Mycobacterium
Tuberculosis- Proteolytically Active Form
pdb|1Y8T|C Chain C, Crystal Structure Of Rv0983 From Mycobacterium
Tuberculosis- Proteolytically Active Form
pdb|2Z9I|A Chain A, Crystal Structure Of Rv0983 From Mycobacterium
Tuberculosis- Proteolytically Active Form
pdb|2Z9I|B Chain B, Crystal Structure Of Rv0983 From Mycobacterium
Tuberculosis- Proteolytically Active Form
pdb|2Z9I|C Chain C, Crystal Structure Of Rv0983 From Mycobacterium
Tuberculosis- Proteolytically Active Form
Length = 324
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 36/89 (40%), Gaps = 16/89 (17%)
Query: 44 KVVPAVVVLRTTACRAFDTEAAGASYATGFVVDKRRGIILTNRHVV----KP----GPVV 95
KVVP+VV L T R + E +G ++ G+ILTN HV+ KP P
Sbjct: 14 KVVPSVVXLETDLGRQSE-EGSG-------IILSAEGLILTNNHVIAAAAKPPLGSPPPK 65
Query: 96 AEAMFVNREEIPVYPIYRDPVHDFGFFRY 124
F + P + DP D R
Sbjct: 66 TTVTFSDGRTAPFTVVGADPTSDIAVVRV 94
>pdb|2ZPM|A Chain A, Crystal Structure Analysis Of Pdz Domain B
Length = 91
Score = 31.6 bits (70), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 30/49 (61%)
Query: 315 LEPGDVLVRVNGEVITQFLKLETLLDDGVDKNIELLIERGGISMTVNLV 363
L+ GD +V V+G+ +TQ++ L+ D ++ L IER G +++ L+
Sbjct: 22 LQAGDRIVXVDGQPLTQWVTFVXLVRDNPGXSLALEIERQGSPLSLTLI 70
>pdb|1IHJ|A Chain A, Crystal Structure Of The N-Terminal Pdz Domain Of Inad In
Complex With A Norpa C-Terminal Peptide
pdb|1IHJ|B Chain B, Crystal Structure Of The N-Terminal Pdz Domain Of Inad In
Complex With A Norpa C-Terminal Peptide
Length = 98
Score = 31.6 bits (70), Expect = 2.8, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Query: 292 SPPGETGLLVVDSVVPGGPAHL--RLEPGDVLVRVNGE 327
SP +T + + +VP PAHL RL+ GD ++ +NG+
Sbjct: 31 SPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGK 68
>pdb|2KAW|A Chain A, Nmr Structure Of The Mdvl1 Pdz Domain In Complex With Its
Inhibitor
Length = 90
Score = 31.2 bits (69), Expect = 3.6, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 7/65 (10%)
Query: 298 GLLVVDSVVPGGP--AHLRLEPGDVLVRVNGEVITQFLKLETLLDDGVDKNIELLIERGG 355
G + + S++ GG A R+EPGD+L++VN F + DD V E++ + G
Sbjct: 29 GGIYIGSIMKGGAVAADGRIEPGDMLLQVND---VNFENMSN--DDAVRVLREIVSQTGP 83
Query: 356 ISMTV 360
IS+TV
Sbjct: 84 ISLTV 88
>pdb|2HGA|A Chain A, Solution Nmr Structure Of Conserved Protein Mth1368,
Northeast Structural Genomics Consortium Target Tt821a
Length = 125
Score = 30.4 bits (67), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 17/25 (68%)
Query: 302 VDSVVPGGPAHLRLEPGDVLVRVNG 326
+DSVVPG PA L PG V+ +NG
Sbjct: 29 IDSVVPGSPASKVLTPGLVIESING 53
>pdb|2H2B|A Chain A, Crystal Structure Of Zo-1 Pdz1 Bound To A Phage-derived
Ligand (wrrttyl)
Length = 107
Score = 30.4 bits (67), Expect = 5.6, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Query: 295 GETGLLVVDSVVPGGPAHLRLEPGDVLVRVNG---EVITQFLKLETLLDDGVDKNIELLI 351
GET +++ D V+ GGPA +L+ D + VNG + + ++ L G + I +
Sbjct: 37 GETSIVISD-VLKGGPAEGQLQENDRVAMVNGVSMDNVEHAFAVQQLRKSGKNAKITIRR 95
Query: 352 ERGG 355
++GG
Sbjct: 96 KKGG 99
>pdb|2H2C|A Chain A, Crystal Structure Of Zo-1 Pdz1 Bound To A Phage-Derived
Ligand (Wrrttwv)
Length = 107
Score = 30.4 bits (67), Expect = 5.6, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Query: 295 GETGLLVVDSVVPGGPAHLRLEPGDVLVRVNG---EVITQFLKLETLLDDGVDKNIELLI 351
GET +++ D V+ GGPA +L+ D + VNG + + ++ L G + I +
Sbjct: 37 GETSIVISD-VLKGGPAEGQLQENDRVAMVNGVSMDNVEHAFAVQQLRKSGKNAKITIRR 95
Query: 352 ERGG 355
++GG
Sbjct: 96 KKGG 99
>pdb|2PBY|A Chain A, Probable Glutaminase From Geobacillus Kaustophilus Hta426
pdb|2PBY|B Chain B, Probable Glutaminase From Geobacillus Kaustophilus Hta426
pdb|2PBY|C Chain C, Probable Glutaminase From Geobacillus Kaustophilus Hta426
pdb|2PBY|D Chain D, Probable Glutaminase From Geobacillus Kaustophilus Hta426
Length = 308
Score = 30.4 bits (67), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 44/197 (22%), Positives = 78/197 (39%), Gaps = 54/197 (27%)
Query: 263 LQVTFVHKGFDET-RRLGLQ----------SATEQMVRHASPPGETGLLVVDSVVPGGPA 311
L + + +G DE ++G++ E+ + +P G LVV S++ GG
Sbjct: 72 LALVLIDRGEDEVFHKVGMEPTDYPFHSIAKLEEKPAKPLNPMINAGALVVTSMIQGGSV 131
Query: 312 HLRLE---------PGDVLVRVNGEV-------------ITQFLKLETLLDDGVDKNIEL 349
RLE G+ + + EV + FLK ++D+ V++ +EL
Sbjct: 132 SERLERLLAFVRRLAGNERISYSDEVARSEFETAFLNRSLCYFLKQHRIIDEDVEELMEL 191
Query: 350 LIERGGISMT------VNLVV----QDLHSITPDYFLEVSGAVIHPLSYQQARNFRFPCG 399
++ I MT + LV+ +D HS P L+V+ + + F CG
Sbjct: 192 YTKQCAIEMTCIDLARIGLVLALDGRDPHSSEPLMPLDVA---------RICKTFMVTCG 242
Query: 400 LVYVAEPGYMLFRAGVP 416
+ G + G+P
Sbjct: 243 M--YNSSGEFAIKVGIP 257
>pdb|3Q31|A Chain A, Structure Of Fungal Alpha Carbonic Anhydrase From
Aspergillus Oryzae
pdb|3Q31|B Chain B, Structure Of Fungal Alpha Carbonic Anhydrase From
Aspergillus Oryzae
Length = 244
Score = 30.0 bits (66), Expect = 6.9, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 24/60 (40%), Gaps = 7/60 (11%)
Query: 558 DARLEDSSTMENAGSRDYFGAPAATTNASFAESVIEPTLVMFEVHVPPSCMIDGVHSQHF 617
D L D S +EN G FG TN S + TL F H P V+ +HF
Sbjct: 59 DLPLADGSKLENLG----FGLQVTLTNGSLTANSKTYTLAQFHFHTPSE---HHVNEEHF 111
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 30.0 bits (66), Expect = 7.6, Method: Composition-based stats.
Identities = 24/109 (22%), Positives = 49/109 (44%), Gaps = 12/109 (11%)
Query: 956 IVQDPHPAVRALGFLPEEGHGVYVARWCHGSPVHRYGLYALQWIVEINGKRTPDLEAFVN 1015
+V++PH + + +LPEE G+ + G+ L+++ + ++E V
Sbjct: 79 VVEEPHEVRKLISYLPEEA----------GAYRNMQGIEYLRFVAGFYASSSSEIEEMVE 128
Query: 1016 VTKEIEH-GEFVRVR-TVHLNGKPRVLTLKQDLHYWPTWELIFDPDTAL 1062
EI GE ++ R + + G R L + + L P ++ +P + L
Sbjct: 129 RATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGL 177
>pdb|2QBW|A Chain A, The Crystal Structure Of Pdz-Fibronectin Fusion Protein
Length = 195
Score = 30.0 bits (66), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 10/65 (15%)
Query: 294 PGETGLLVVDSVVPGGPAHLRLEPGDVLVRVNGEVITQFLKLE-----TLLDDGVDKNIE 348
P + G+ V V P GPA L+PGD +++ NG F+ +E +LL +E
Sbjct: 21 PDDDGIFVT-RVQPEGPASKLLQPGDKIIQANGY---SFINIEHGQAVSLLKT-FQNTVE 75
Query: 349 LLIER 353
L+I R
Sbjct: 76 LIIVR 80
>pdb|2CSJ|A Chain A, Solution Structure Of N-Terminal Pdz Domain From Mouse
Tjp2
Length = 117
Score = 30.0 bits (66), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 295 GETGLLVVDSVVPGGPAHLRLEPGDVLVRVNGEVITQFL 333
GET +++ D V+PGGPA L+ D +V VNG + L
Sbjct: 44 GETSIVISD-VLPGGPADGLLQENDRVVMVNGTPMEDVL 81
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,921,376
Number of Sequences: 62578
Number of extensions: 1354954
Number of successful extensions: 3178
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 3144
Number of HSP's gapped (non-prelim): 82
length of query: 1076
length of database: 14,973,337
effective HSP length: 109
effective length of query: 967
effective length of database: 8,152,335
effective search space: 7883307945
effective search space used: 7883307945
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)