Query 001444
Match_columns 1076
No_of_seqs 649 out of 5616
Neff 7.8
Searched_HMMs 29240
Date Tue Mar 26 16:05:56 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001444.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_746-750//hhsearch_pdb/001444hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a8c_A Periplasmic PH-dependen 1.0 1 1 445.7 49.1 384 31-457 8-421 (436)
2 3pv2_A DEGQ; trypsin fold, PDZ 1.0 1 1 444.8 36.4 382 36-456 19-443 (451)
3 4fln_A Protease DO-like 2, chl 1.0 1 1 439.9 46.4 377 43-453 44-470 (539)
4 4a8c_A Periplasmic PH-dependen 1.0 1 1 433.7 44.7 396 588-1048 18-433 (436)
5 3pv2_A DEGQ; trypsin fold, PDZ 1.0 1 1 431.0 32.4 398 588-1043 24-451 (451)
6 1ky9_A Protease DO, DEGP, HTRA 1.0 1 1 426.9 24.9 377 34-456 11-440 (448)
7 4fln_A Protease DO-like 2, chl 1.0 1 1 426.9 43.1 391 591-1041 45-478 (539)
8 1ky9_A Protease DO, DEGP, HTRA 1.0 1 1 413.0 18.1 357 616-1043 85-448 (448)
9 3stj_A Protease DEGQ; serine p 1.0 1 1 374.8 34.3 307 32-373 9-340 (345)
10 1te0_A Protease DEGS; two doma 1.0 1 1 345.4 32.2 300 33-368 6-316 (318)
No 1
>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A
Probab=1.00 E-value=1 Score=445.72 Aligned_cols=384 Identities=19% Similarity=0.316 Sum_probs=291.6
Q ss_pred CCCCCCHHHHHHHHHCCCEEEEEEEEEE------------CCCC------CCCCCCEEEEEEEECCCCEEEECCCCCCCC
Q ss_conf 7668404999998839960999986641------------2698------999883799999928982999375436999
Q 001444 31 NVATADDWRKALNKVVPAVVVLRTTACR------------AFDT------EAAGASYATGFVVDKRRGIILTNRHVVKPG 92 (1076)
Q Consensus 31 ~~~~~~~~~~~~~~v~~svV~I~~~~~~------------~~d~------~~~~~~~gTGfvV~~~~G~IlT~~Hvv~~~ 92 (1076)
.++..++|..+++++.||||.|.+.... .|+. .....+.||||+|++++||||||+|||. +
T Consensus 8 ~~~~~~~~~~~~~~~~paVV~I~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~GSGfii~~~~G~IlTn~Hvv~-~ 86 (436)
T 4a8c_A 8 DQAPLPSLAPMLEKVLPAVVSVRVEGTASQGQKIPEEFKKFFGDDLPDQPAQPFEGLGSGVIINASKGYVLTNNHVIN-Q 86 (436)
T ss_pred CCCCCCCHHHHHHHHCCCEEEEEEEEEECCCCCCCCHHHHHCCCCCCCCCCCCCCEEEEEEEEECCCCEEEECHHHHC-C
T ss_conf 466887899999863794799999875125666760556641555544557767547899999899898998879919-9
Q ss_pred CCEEEEEECCCCEEEEEEEEECCCCCEEEEEEC-CCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEEEEEE
Q ss_conf 907999963990998999996498959999994-8997522346888998678899999999518999880799799874
Q 001444 93 PVVAEAMFVNREEIPVYPIYRDPVHDFGFFRYD-PSAIQFLNYDEIPLAPEAACVGLEIRVVGNDSGEKVSILAGTLARL 171 (1076)
Q Consensus 93 ~~~~~v~~~~~~~~~a~vv~~D~~~DlAiLk~~-~~~~~~~~~~~~~l~~~~~~~G~~v~~iG~p~g~~~s~~~G~is~~ 171 (1076)
...+.+.+.+++.++|++++.|+.+|||+||++ +..++.+.+.. +..+++|++|+++|||++...+++.|++++.
T Consensus 87 a~~i~V~~~dg~~~~a~vv~~d~~~DlAllkv~~~~~l~~~~l~~----s~~~~~G~~v~aiG~P~g~~~~vt~G~vs~~ 162 (436)
T 4a8c_A 87 AQKISIQLNDGREFDAKLIGSDDQSDIALLQIQNPSKLTQIAIAD----SDKLRVGDFAVAVGNPFGLGQTATSGIVSAL 162 (436)
T ss_pred CCEEEEEECCCCEEEEEEEEECCCCCEEEEEECCCCCCCEEECCC----CCCCCCCCEEEEEECCCCCCCCEEEEEEEEE
T ss_conf 988999957998999999997488898999934778895576167----3547779889999767887862777799642
Q ss_pred CCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCEECCCCCEEEEEECCCCC----CCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 4798888888865566036999333689997890542888399982033589----997333277999999999994497
Q 001444 172 DRDAPHYKKDGYNDFNTFYMQAASGTKGGSSGSPVIDWQGRAVALNAGSKSS----SASAFFLPLERVVRALRFLQERRD 247 (1076)
Q Consensus 172 ~~~~p~~~~~~~~~~~~~~i~~~a~~~~G~SGgpv~n~~G~vVGi~~~~~~~----~~~~f~lP~~~i~~~l~~l~~~~~ 247 (1076)
.+.. +....+.+ +||+++.+++|+|||||+|.+|+||||+++.... .+++|++|++.+++++++|.+.+
T Consensus 163 ~r~~--~~~~~~~~----~iq~da~i~~GnSGGPl~n~~G~vvGI~~~~~~~~~~~~g~gfaIP~~~~~~~~~~l~~~g- 235 (436)
T 4a8c_A 163 GRSG--LNLEGLEN----FIQTDASINRGNAGGALLNLNGELIGINTAILAPGGGSVGIGFAIPSNMARTLAQQLIDFG- 235 (436)
T ss_pred CCCC--CCCCCCCC----EEEECCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCEEEEEEEEHHHHHHHHHHHHHCC-
T ss_conf 2465--57777468----7999275289887276027897799997110168897235788886688999999987445-
Q ss_pred CCCCCCCEECCCCCCCCEEEEECCHHHHHHCCCCHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCC-CCCCCCEEEEECC
Q ss_conf 654554100147776364999939367777199835798664079999876799977459990014-9999989999999
Q 001444 248 CNIHNWEAVSIPRGTLQVTFVHKGFDETRRLGLQSATEQMVRHASPPGETGLLVVDSVVPGGPAHL-RLEPGDVLVRVNG 326 (1076)
Q Consensus 248 ~~~~~~~~~~~~rg~lg~~~~~~~~~~~r~lGl~~~~~~~~~~~~~~~~~G~lvv~~V~~~spA~~-gL~~GD~Il~VnG 326 (1076)
.+.|++||+.++....+.++.||++ ...|++| ..|.++|||++ ||+.||+|++|||
T Consensus 236 ---------~v~r~~lGv~~~~~~~~~a~~~gl~-------------~~~G~~V-~~V~~~spA~~aGL~~GD~I~~vnG 292 (436)
T 4a8c_A 236 ---------EIKRGLLGIKGTEMSADIAKAFNLD-------------VQRGAFV-SEVLPGSGSAKAGVKAGDIITSLNG 292 (436)
T ss_pred ---------CCCCCCCCEEECCCCHHHHHHHCCC-------------CCCCEEE-EEECCCCHHHHCCCCCCCEEEEECC
T ss_conf ---------4522557557525688999970999-------------8862699-9978999588789999989999899
Q ss_pred EEECCHHHHHHHHH-CCCCCEEEEEEEECCEEEEEEEEECCCCCCCCC---CCCCCCCEEEECCCHHHHHCCCCCCCEEE
Q ss_conf 97089667999883-289985999999699699999995148888877---52113761980499887720677888099
Q 001444 327 EVITQFLKLETLLD-DGVDKNIELLIERGGISMTVNLVVQDLHSITPD---YFLEVSGAVIHPLSYQQARNFRFPCGLVY 402 (1076)
Q Consensus 327 ~~v~~~~~l~~~l~-~~~g~~v~l~v~R~g~~~~~~i~~~~~~~~~~~---~~~~~~G~~~~~ls~~~~~~~~~~~~gv~ 402 (1076)
+.+.++.++...+. ..+|++++++|.|+|+..++++++..+...... ..+.+.|..+.+... . -...|++
T Consensus 293 ~~v~~~~~l~~~l~~~~~g~~v~l~v~R~g~~~~~~v~l~~~~~~~~~~~~~~~gl~~~~~~~~~~---~---~~~~gv~ 366 (436)
T 4a8c_A 293 KPLNSFAELRSRIATTEPGTKVKLGLLRNGKPLEVEVTLDTSTSSSASAEMITPALEGATLSDGQL---K---DGGKGIK 366 (436)
T ss_pred EECCCHHHHHHHHHHCCCCCEEEEEEEECCEEEEEEEEECCCCCCCCCCCCCCCCCEEEECCCCCC---C---CCCCCEE
T ss_conf 998899999999972599988999999899999999997777765433221456723552465456---6---7888779
Q ss_pred EEC--CCCHHHHCCCCCCCEEEECCCEECCCHHHHHHHHHHCCCCCEEEEEEEECCC
Q ss_conf 986--8984567599999799980992049988999999844999737699975045
Q 001444 403 VAE--PGYMLFRAGVPRHAIIKKFAGEEISRLEDLISVLSKLSRGARVPIEYSSYTD 457 (1076)
Q Consensus 403 v~~--~~s~a~~aGl~~Gd~I~~Vng~~v~~l~~~v~~i~~~~~g~~V~i~~~~~~~ 457 (1076)
|.+ ++|+|+++||+.||+|++|||+++.+|++|.+++++. ++.+.|++.|.+.
T Consensus 367 V~~V~~~spA~~aGL~~GD~I~~vng~~v~~~~~~~~~l~~~--~~~v~l~v~R~g~ 421 (436)
T 4a8c_A 367 IDEVVKGSPAAQAGLQKDDVIIGVNRDRVNSIAEMRKVLAAK--PAIIALQIVRGNE 421 (436)
T ss_pred EEEECCCCHHHHCCCCCCCEEEEECCEECCCHHHHHHHHHHC--CCEEEEEEEECCE
T ss_conf 999679997998599999999998999878999999999728--9839999998999
No 2
>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A
Probab=1.00 E-value=1 Score=444.77 Aligned_cols=382 Identities=20% Similarity=0.321 Sum_probs=236.1
Q ss_pred CHHHHHHHHHCCCEEEEEEEEEE-----------------CCCCC---------CCCCCEEEEEEEECCCCEEEECCCCC
Q ss_conf 04999998839960999986641-----------------26989---------99883799999928982999375436
Q 001444 36 DDWRKALNKVVPAVVVLRTTACR-----------------AFDTE---------AAGASYATGFVVDKRRGIILTNRHVV 89 (1076)
Q Consensus 36 ~~~~~~~~~v~~svV~I~~~~~~-----------------~~d~~---------~~~~~~gTGfvV~~~~G~IlT~~Hvv 89 (1076)
.++..+++++.||||.|.+.... .|.+. ....+.||||+|++++||||||+|||
T Consensus 19 ~~~~~~~~~~~pavv~i~~~~~~~~~~~~~~~~~~~~~~~~ff~~~~~~~~~~~~~~~~~GSGfiI~~~~G~IlTn~HVv 98 (451)
T 3pv2_A 19 PSMAPVLKNIMPAIVNVAVQGYLPNDVTPPGSAGNDEENQPNNRPPQSRMPEKGRKFESIGSGVIIDPNNGVIITNDHVI 98 (451)
T ss_dssp CCSHHHHHHHGGGEEEEEEEEECCC-----------------------------CEEEEEEEEEEEETTTTEEEECHHHH
T ss_pred CCHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCEEEEEEEEECCCCEEEECHHHH
T ss_conf 78899999748947999999863256777534466566786436656665556764432479999989999999786993
Q ss_pred CCCCCEEEEEECCCCEEEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCC-----CEEE
Q ss_conf 99990799996399099899999649895999999489975223468889986788999999995189998-----8079
Q 001444 90 KPGPVVAEAMFVNREEIPVYPIYRDPVHDFGFFRYDPSAIQFLNYDEIPLAPEAACVGLEIRVVGNDSGEK-----VSIL 164 (1076)
Q Consensus 90 ~~~~~~~~v~~~~~~~~~a~vv~~D~~~DlAiLk~~~~~~~~~~~~~~~l~~~~~~~G~~v~~iG~p~g~~-----~s~~ 164 (1076)
. +...+.+.+.+++.++|++++.|+.+|||+||++++.++++.+.. +..+++|++|+++|||+|.. .+++
T Consensus 99 ~-~a~~i~V~~~dg~~~~a~vv~~d~~~DlAlLkv~~~~l~~~~l~~----s~~~~~G~~V~aiG~P~G~~~~~~~~~vt 173 (451)
T 3pv2_A 99 R-NASLITVTLQDGRRLKARLIGGDSETDLAVLKIDAKNLKSLVIGD----SDKLEVGDFVVAIGNPFGLNSFGNSQSAT 173 (451)
T ss_dssp T-TEEEEEEECTTSCEEECEEEEEETTTTEEEEECCCSSCCCCCBCC----GGGCCTTCEEEEEECCCCC-----CCEEE
T ss_pred C-CCCEEEEEECCCCEEEEEEEECCCCCCEEEEEECCCCCCEEEECC----CCCCCCCCEEEEEECCCCCCCCCCCCCEE
T ss_conf 9-998899997699799999992475774799997686785567457----24488799899998998756656677356
Q ss_pred EEEEEEECCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCEECCCCCEEEEEECCCC----CCCCCCCCCHHHHHHHHH
Q ss_conf 9799874479888888886556603699933368999789054288839998203358----999733327799999999
Q 001444 165 AGTLARLDRDAPHYKKDGYNDFNTFYMQAASGTKGGSSGSPVIDWQGRAVALNAGSKS----SSASAFFLPLERVVRALR 240 (1076)
Q Consensus 165 ~G~is~~~~~~p~~~~~~~~~~~~~~i~~~a~~~~G~SGgpv~n~~G~vVGi~~~~~~----~~~~~f~lP~~~i~~~l~ 240 (1076)
.|++++..+.. +....+.+ +||+++.+++|+|||||||.+|+||||+++... ..+++|+||++.++++++
T Consensus 174 ~Givs~~~r~~--~~~~~~~~----~iqtda~i~~GnSGGPl~n~~G~VIGI~t~~~~~~~~~~g~gfaIP~~~~~~~~~ 247 (451)
T 3pv2_A 174 FGIVSALKRSD--LNIEGVEN----FIQTDAAINPGNSGGALVNAKGELIGINTAILSPYGGNVGIGFAIPINMVKDVAQ 247 (451)
T ss_dssp EEEEEEEC------------C----CEEESSCCCGGGTTSEEEETTCCEEEEEECCC------CCCEEEEEHHHHHHHHH
T ss_pred EEEEEECCCCC--CCCCCCCE----EEEEECCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCEEEEEHHHHHHHHHH
T ss_conf 79994313355--57777413----8998445279987482518897499999686637888532444400688999999
Q ss_pred HHHHCCCCCCCCCCEECCCCCCCCEEEEECCHHHHHHCCCCHHHHHHHHCCCCCCC-CCEEEEEEECCCCCCCC-CCCCC
Q ss_conf 99944976545541001477763649999393677771998357986640799998-76799977459990014-99999
Q 001444 241 FLQERRDCNIHNWEAVSIPRGTLQVTFVHKGFDETRRLGLQSATEQMVRHASPPGE-TGLLVVDSVVPGGPAHL-RLEPG 318 (1076)
Q Consensus 241 ~l~~~~~~~~~~~~~~~~~rg~lg~~~~~~~~~~~r~lGl~~~~~~~~~~~~~~~~-~G~lvv~~V~~~spA~~-gL~~G 318 (1076)
+|++++ .+.|||||+.++....+.++.||++ .. .|++| ..|.++|||++ ||+.|
T Consensus 248 ~l~~~g----------~v~r~~lGv~~~~~~~~~a~~~gl~-------------~~~~G~~V-~~V~~~spA~~aGL~~G 303 (451)
T 3pv2_A 248 QIIKFG----------SIHRGLMGIFVQHLTPELAQAMGYP-------------EDFQGALV-SQVNPNSPAELAGLKAG 303 (451)
T ss_dssp HHHHHS----------SCCCCBCCEEEEECCHHHHHHTTSC-------------TTCCCEEE-EEECTTSHHHHHTCCTT
T ss_pred HHHHCC----------CCCCCCCCCEEEECCHHHHHHCCCC-------------CCCCEEEE-EECCCCCHHHHCCCCCC
T ss_conf 998629----------7645666616786529899862998-------------67850899-95589986887599999
Q ss_pred CEEEEECCEEECCHHHHHHHHH-CCCCCEEEEEEEECCEEEEEEEEECCCCCCCC---CCCCCCCCEEEECCCHHHHHCC
Q ss_conf 8999999997089667999883-28998599999969969999999514888887---7521137619804998877206
Q 001444 319 DVLVRVNGEVITQFLKLETLLD-DGVDKNIELLIERGGISMTVNLVVQDLHSITP---DYFLEVSGAVIHPLSYQQARNF 394 (1076)
Q Consensus 319 D~Il~VnG~~v~~~~~l~~~l~-~~~g~~v~l~v~R~g~~~~~~i~~~~~~~~~~---~~~~~~~G~~~~~ls~~~~~~~ 394 (1076)
|+|++|||+++.++.++...+. ..+|++++++|.|+|+..++++++..+..... .......|+.+.++.++....
T Consensus 304 DvI~~vnG~~v~~~~~l~~~l~~~~~g~~v~l~V~R~g~~~~~~v~l~~~~~~~~~~~~~~~~~~G~~l~~~~~~~~~~- 382 (451)
T 3pv2_A 304 DIITQINDTKITQATQVKTTISLLRVGSTVKIIVERDNKPLTLSAVVTDIKSHEQKLQSNNPFLYGLALRAFEQESPPH- 382 (451)
T ss_dssp CEEEEETTEECCSHHHHHHHHHTSCTTCEEEEEEEETTEEEEEEEECBCHHHHHHHHHHHSTTTTTEEEEEEEEECTTS-
T ss_pred CEEEEECCEECCCHHHHHHHHHHCCCCCEEEEEEEECCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCC-
T ss_conf 9999889999278999999997158998899999999999999999755776544332235453431015488567412-
Q ss_pred CCCCCEEEEE--CCCCHHHHCCCCCCCEEEECCCEECCCHHHHHHHHHHCCCCCEEEEEEEECC
Q ss_conf 7788809998--6898456759999979998099204998899999984499973769997504
Q 001444 395 RFPCGLVYVA--EPGYMLFRAGVPRHAIIKKFAGEEISRLEDLISVLSKLSRGARVPIEYSSYT 456 (1076)
Q Consensus 395 ~~~~~gv~v~--~~~s~a~~aGl~~Gd~I~~Vng~~v~~l~~~v~~i~~~~~g~~V~i~~~~~~ 456 (1076)
....|++|. .++|+|+++||+.||+|++|||+++.++++|.+++++ .++.+.+++.|.+
T Consensus 383 -~~~~Gv~V~~V~~gspA~~aGL~~GD~I~~Vng~~v~~~~~~~~~l~~--~~~~v~l~v~R~g 443 (451)
T 3pv2_A 383 -GNVIGVQVVGASENSAGWRAGIRPGDIIISANKKPVTDVKSLQTIAQE--KKKELLVQVLRGP 443 (451)
T ss_dssp -CEEEEEEEEEECTTSHHHHHTCCTTCEEEEETTEECCSHHHHHHHTTS--SCSCEEEEEEETT
T ss_pred -CCCCCEEEEEECCCCHHHHCCCCCCCEEEEECCEECCCHHHHHHHHHC--CCCEEEEEEEECC
T ss_conf -688840899889999799849999999999899987899999999863--7975999999899
No 3
>4fln_A Protease DO-like 2, chloroplastic; protease, DEG, PDZ, hydrolase; 2.80A {Arabidopsis thaliana}
Probab=1.00 E-value=1 Score=439.89 Aligned_cols=377 Identities=18% Similarity=0.208 Sum_probs=309.9
Q ss_pred HHHCCCEEEEEEEEEE-----CCCCCCCCCCEEEEEEEECCCCEEEECCCCCCCCCCEEEEEEC-CCCEEEEEEEEECCC
Q ss_conf 8839960999986641-----2698999883799999928982999375436999907999963-990998999996498
Q 001444 43 NKVVPAVVVLRTTACR-----AFDTEAAGASYATGFVVDKRRGIILTNRHVVKPGPVVAEAMFV-NREEIPVYPIYRDPV 116 (1076)
Q Consensus 43 ~~v~~svV~I~~~~~~-----~~d~~~~~~~~gTGfvV~~~~G~IlT~~Hvv~~~~~~~~v~~~-~~~~~~a~vv~~D~~ 116 (1076)
....+|||.|.+.... +|.......+.||||+|+ +||||||+|||. +...+.+++. |++.++|++++.|+.
T Consensus 44 ~~~~~sVV~I~~~~~~~~~~~Pw~~~~~~~s~GSGfiI~--dG~IlTN~HVV~-~a~~i~V~~~~dg~~~~A~vv~~D~~ 120 (539)
T 4fln_A 44 ASFLNAVVKVYCTHTAPDYSLPWQKQRQFTSTGSAFMIG--DGKLLTNAHCVE-HDTQVKVKRRGDDRKYVAKVLVRGVD 120 (539)
T ss_dssp HHHHTTEEEEEEEECCBCSSSTTSBCCCEEEEEEEEEEE--TTEEEECGGGGT-TEEEEEEECTTCCCCEEEEEEEEETT
T ss_pred CCCCCCEEEEEEEECCCCCCCCCCCCCCCCEEEEEEEEE--CCEEEECHHHCC-CCCEEEEEECCCCEEEEEEEEEECCC
T ss_conf 114787699997764778778541478660679999997--999997868828-99869999926997999999997799
Q ss_pred CCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCC-CEEEEEEEEEECCCCCCCCCCCCCCCCEEEEEEEE
Q ss_conf 95999999489975223468889986788999999995189998-80799799874479888888886556603699933
Q 001444 117 HDFGFFRYDPSAIQFLNYDEIPLAPEAACVGLEIRVVGNDSGEK-VSILAGTLARLDRDAPHYKKDGYNDFNTFYMQAAS 195 (1076)
Q Consensus 117 ~DlAiLk~~~~~~~~~~~~~~~l~~~~~~~G~~v~~iG~p~g~~-~s~~~G~is~~~~~~p~~~~~~~~~~~~~~i~~~a 195 (1076)
+|||+||++...+.. .+.++.+ .+.+++|++|+++|||+|.. .+++.|+||++++.....+ .....+||+|+
T Consensus 121 ~DLAvLkv~~~~~~~-~~~pl~~-g~~~~vGd~V~aiG~P~g~~~~tvT~GIVSa~~r~~~~~~-----~~~~~~IQtDA 193 (539)
T 4fln_A 121 CDIALLSVESEDFWK-GAEPLRL-GHLPRLQDSVTVVGYPLGGDTISVTKGVVSRIEVTSYAHG-----SSDLLGIQIDA 193 (539)
T ss_dssp TTEEEEEECCSSSST-TCCCCCB-CCCCCTTCEEEEEECCSSSCCCEEEEEEEEEEEEEECTTS-----CCEEEEEEESS
T ss_pred CCEEEEEEECCCCCC-CCCEEEC-CCCCCCCCEEEEEECCCCCCCCCEEEEEECCCCCCCCCCC-----CCCEEEEEEEE
T ss_conf 888999980776776-7845425-8867679969999868999987678479875644445788-----74156999976
Q ss_pred CCCCCCCCCCEECCCCCEEEEEECCCC---CCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEECCCCCCCCEEEEEC-C
Q ss_conf 368999789054288839998203358---999733327799999999999449765455410014777636499993-9
Q 001444 196 GTKGGSSGSPVIDWQGRAVALNAGSKS---SSASAFFLPLERVVRALRFLQERRDCNIHNWEAVSIPRGTLQVTFVHK-G 271 (1076)
Q Consensus 196 ~~~~G~SGgpv~n~~G~vVGi~~~~~~---~~~~~f~lP~~~i~~~l~~l~~~~~~~~~~~~~~~~~rg~lg~~~~~~-~ 271 (1076)
++++|+|||||||.+|+||||+++... ..+++|+||++.+++++++|.+.+. ...|||||+.++.. .
T Consensus 194 aInpGnSGGPLvn~~GeVIGIntai~~~~~~~gigfAIP~~~v~~vl~~l~~~G~---------~~~r~~LGv~~~~~~~ 264 (539)
T 4fln_A 194 AINPGNSGGPAFNDQGECIGVAFQVYRSEETENIGYVIPTTVVSHFLTDYERNGK---------YTGYPCLGVLLQKLEN 264 (539)
T ss_dssp CCCTTTTTSEEECSSSCEEEEECCCC-----CCCEEEEEHHHHHHHHHHHHTTTS---------CCCCCBCCEEEEECCC
T ss_pred EECCCCCCCHHCCCCCCEEEEEEEEECCCCCCCCEECCCHHHHHHHHHHHHHCCE---------EEEEEECCEEEEECCC
T ss_conf 8659983344003799689899888437888863000319999999999997692---------7853103568786479
Q ss_pred HHHHHHCCCCHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCCCCCCEEEEECCEEECCHHH----------HHHHH-H
Q ss_conf 367777199835798664079999876799977459990014999998999999997089667----------99988-3
Q 001444 272 FDETRRLGLQSATEQMVRHASPPGETGLLVVDSVVPGGPAHLRLEPGDVLVRVNGEVITQFLK----------LETLL-D 340 (1076)
Q Consensus 272 ~~~~r~lGl~~~~~~~~~~~~~~~~~G~lvv~~V~~~spA~~gL~~GD~Il~VnG~~v~~~~~----------l~~~l-~ 340 (1076)
...++.|||+ ...|++| ..|.|+|||+++|+.||+|++|||+.|.+..+ +..++ .
T Consensus 265 ~~~~~~~~l~-------------~~~Gv~V-~~V~~~spA~~al~~GDvI~~idg~~V~~~g~~~~~~~~~~~l~~~v~~ 330 (539)
T 4fln_A 265 PALRECLKVP-------------TNEGVLV-RRVEPTSDASKVLKEGDVIVSFDDLHVGCEGTVPFRSSERIAFRYLISQ 330 (539)
T ss_dssp HHHHHHHTCS-------------SSBCEEE-EEECTTSGGGGTCCTTCEEEEETTEECBSSSEEECSTTCEEETHHHHHT
T ss_pred HHHHHHCCCC-------------CCCCEEE-ECCCCCCHHHHCCCCCCEEEEECCEEECCCCEECCCCCHHHHHHHHHHC
T ss_conf 9999860799-------------7675044-0006899589476679899978999968587203343016899999970
Q ss_pred CCCCCEEEEEEEECCEEEEEEEEECCCCCCCC-------CCCCCCCCEEEECCCHHHHHCCCCC----------------
Q ss_conf 28998599999969969999999514888887-------7521137619804998877206778----------------
Q 001444 341 DGVDKNIELLIERGGISMTVNLVVQDLHSITP-------DYFLEVSGAVIHPLSYQQARNFRFP---------------- 397 (1076)
Q Consensus 341 ~~~g~~v~l~v~R~g~~~~~~i~~~~~~~~~~-------~~~~~~~G~~~~~ls~~~~~~~~~~---------------- 397 (1076)
..+|++++++|+|+|+.+++++++..++...+ ..+..++|+.|+++++++++.++..
T Consensus 331 ~~~Gd~v~l~v~R~Gk~~~v~Vtl~~~~~~~~~~~~~~~p~~~~~~Gl~f~~Lt~~~~~~~~~~~~~~~l~~~~~~~~~~ 410 (539)
T 4fln_A 331 KFAGDIAEIGIIRAGEHKKVQVVLRPRVHLVPYHIDGGQPSYIIVAGLVFTPLSEPLIEEECEDTIGLKLLTKARYSVAR 410 (539)
T ss_dssp SCTTCEEEEEEEETTEEEEEEEECBCCCCSSCSCTTSSCCCCCCSTTEEEEECCHHHHTTSCSSSSCHHHHHHHHHCCCS
T ss_pred CCCCCEEEEEEEECCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHCCCCCCCEEEEHHHHHHHC
T ss_conf 79898799999989989999999735865553112468974111066388508999997422456671433100000100
Q ss_pred ---CCEEEEEC--CCCHHHHCCCCCCCEEEECCCEECCCHHHHHHHHHHCCCCCEEEEEEE
Q ss_conf ---88099986--898456759999979998099204998899999984499973769997
Q 001444 398 ---CGLVYVAE--PGYMLFRAGVPRHAIIKKFAGEEISRLEDLISVLSKLSRGARVPIEYS 453 (1076)
Q Consensus 398 ---~~gv~v~~--~~s~a~~aGl~~Gd~I~~Vng~~v~~l~~~v~~i~~~~~g~~V~i~~~ 453 (1076)
.+||++++ |++++..+|++.||+|++|||++|.++++|.+++++. +++.+.+++.
T Consensus 411 ~~~~~gVvvs~V~~~s~a~~~g~~~gdiI~~vNg~~V~s~~~l~~~l~~~-k~~~l~~~~~ 470 (539)
T 4fln_A 411 FRGEQIVILSQVLANEVNIGYEDMNNQQVLKFNGIPIRNIHHLAHLIDMC-KDKYLVFEFE 470 (539)
T ss_dssp STTCCCEEEEEECCCGGGTTCSSCCSEEEEEETTEECCSHHHHHHHHHTC-CSSEEEEEET
T ss_pred CCCCEEEEEEEECCCCHHHHCCCCCCCEEEEECCEECCCHHHHHHHHHHC-CCCEEEEEEC
T ss_conf 37960899998658853554378899989948998769999999999974-8975999978
No 4
>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A
Probab=1.00 E-value=1 Score=433.74 Aligned_cols=396 Identities=19% Similarity=0.264 Sum_probs=313.1
Q ss_pred CCCEEEEEEEEEEEECCCCC----------CCCC------CCCCEEEEEEEEEEEECCCEEEEEECCCCCCCCCCEEEEE
Q ss_conf 34212211799999828633----------4689------6556026799999840883089991731148996189981
Q 001444 588 AESVIEPTLVMFEVHVPPSC----------MIDG------VHSQHFFGTGVIIYHSQSMGLVVVDKNTVAISASDVMLSF 651 (1076)
Q Consensus 588 ~~~~~~~S~V~V~~~~~~~~----------~~d~------~~~~~~~GsG~vid~~~~~G~IlTn~~~V~~~~~~i~v~~ 651 (1076)
..+++.+|+|.|.+...... .+.. .......||||||+. ++|||||| +||+.++.++.|++
T Consensus 18 ~~~~~~paVV~I~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~GSGfii~~--~~G~IlTn-~Hvv~~a~~i~V~~ 94 (436)
T 4a8c_A 18 MLEKVLPAVVSVRVEGTASQGQKIPEEFKKFFGDDLPDQPAQPFEGLGSGVIINA--SKGYVLTN-NHVINQAQKISIQL 94 (436)
T ss_pred HHHHHCCCEEEEEEEEEECCCCCCCCHHHHHCCCCCCCCCCCCCCEEEEEEEEEC--CCCEEEEC-HHHHCCCCEEEEEE
T ss_conf 9986379479999987512566676055664155554455776754789999989--98989988-79919998899995
Q ss_pred ECCCEEEEEEEEEEECCCCEEEEEE-CCCCCCCCCCCCEEEEECCCCCCCCCCCEEEEEEECCCCCEEEEEEEEECCCCE
Q ss_conf 1489379289999508873899998-799978654441010020689368999979999508997303442268156200
Q 001444 652 AAFPIEIPGEVVFLHPVHNFALIAY-DPSSLGVAGASVVRAAELLPEPALRRGDSVYLVGLSRSLQATSRKSIVTNPCAA 730 (1076)
Q Consensus 652 ~d~~~~~~a~vv~~dp~~dlAilk~-d~~~~~~~~~~~v~~~~l~~~~~l~~G~~V~~iG~p~~~~~~~~~~~vt~i~~~ 730 (1076)
.| ++.++|++++.|+.+|+||||+ ++..+++ ++|+++..++.|++|+++|||+++......+.++
T Consensus 95 ~d-g~~~~a~vv~~d~~~DlAllkv~~~~~l~~--------~~l~~s~~~~~G~~v~aiG~P~g~~~~vt~G~vs----- 160 (436)
T 4a8c_A 95 ND-GREFDAKLIGSDDQSDIALLQIQNPSKLTQ--------IAIADSDKLRVGDFAVAVGNPFGLGQTATSGIVS----- 160 (436)
T ss_pred CC-CCEEEEEEEEECCCCCEEEEEECCCCCCCE--------EECCCCCCCCCCCEEEEEECCCCCCCCEEEEEEE-----
T ss_conf 79-989999999974888989999347788955--------7616735477798899997678878627777996-----
Q ss_pred EECCCCCCCCC-CCCCEEEEEEECCCCC-CCCCEEECCCCEEEEEEEECCCCCCCCCCCCCCCEEEECCCHHHHHHHHHH
Q ss_conf 00288899854-3342169998136588-867148778912999981024341025889876124842345669999999
Q 001444 731 LNISSADCPRY-RAMNMEVIELDTDFGS-TFSGVLTDEHGRVQAIWGSFSTQVKFGCSSSEDHQFVRGIPIYTISRVLDK 808 (1076)
Q Consensus 731 ~~i~~~~~~~~-~~~~~~~i~~da~ig~-~sGGpL~d~~G~VvGi~~~~~~~~~~g~~~~~~~~~~~aipi~~i~~~l~~ 808 (1076)
+..+..+ .....++||+|+++++ +|||||+|.+|+|+||+++.... +....++.||||++.+++++++
T Consensus 161 ----~~~r~~~~~~~~~~~iq~da~i~~GnSGGPl~n~~G~vvGI~~~~~~~------~~~~~g~gfaIP~~~~~~~~~~ 230 (436)
T 4a8c_A 161 ----ALGRSGLNLEGLENFIQTDASINRGNAGGALLNLNGELIGINTAILAP------GGGSVGIGFAIPSNMARTLAQQ 230 (436)
T ss_pred ----EECCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCEEEEEEEEECCC------CCCCEEEEEEEEHHHHHHHHHH
T ss_conf ----422465577774687999275289887276027897799997110168------8972357888866889999999
Q ss_pred HHCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCHHHHHHCCCCHHHHHHHHHCCCCCCCEEEEEEECCCCHHHHH-CCCC
Q ss_conf 863999996422564468982026511899827476877099999999998609984003999975599977661-3489
Q 001444 809 IISGASGPSLLINGVKRPMPLVRILEVELYPTLLSKARSFGLSDDWVQALVKKDPVRRQVLRVKGCLAGSKAENM-LEQG 887 (1076)
Q Consensus 809 l~~~~~~~~~~~~~v~r~~p~~~~Lgv~~~~i~~~~a~~~G~~~~wi~~~~~~~~~~~~~~~V~~v~~~s~A~~a-L~~G 887 (1076)
|++.++ +.|+ |||+.++.++...++.+|++.. .+++|..|.++|||+++ |+.|
T Consensus 231 l~~~g~--------v~r~-----~lGv~~~~~~~~~a~~~gl~~~-------------~G~~V~~V~~~spA~~aGL~~G 284 (436)
T 4a8c_A 231 LIDFGE--------IKRG-----LLGIKGTEMSADIAKAFNLDVQ-------------RGAFVSEVLPGSGSAKAGVKAG 284 (436)
T ss_pred HHHCCC--------CCCC-----CCCEEECCCCHHHHHHHCCCCC-------------CCEEEEEECCCCHHHHCCCCCC
T ss_conf 874454--------5225-----5755752568899997099988-------------6269999789995887899999
Q ss_pred CEEEEECCEECCCHHHHHHHHHHCCCCCCCCCEEEEEEEECCEEEEEEEECCCCCCCCCCCEEEECCCCCCCCCHHHHHC
Q ss_conf 99999899871886679999882268999997599999949989999995001589997614410474113894767632
Q 001444 888 DMMLAINKQPVTCFHDIENACQALDKDGEDNGKLDITIFRQGREIELQVGTDVRDGNGTTRVINWCGCIVQDPHPAVRAL 967 (1076)
Q Consensus 888 DiIlsVnG~~V~~~~dl~~~l~~~~~g~~~~~~v~l~V~R~g~~~~v~v~l~~~~~~~t~~~~~~~G~~~~~p~~~~~~~ 967 (1076)
|+|++|||++|.++.++...+....++ ++++++|.|+|+.+++.+++...+...........|+....+...
T Consensus 285 D~I~~vnG~~v~~~~~l~~~l~~~~~g----~~v~l~v~R~g~~~~~~v~l~~~~~~~~~~~~~~~gl~~~~~~~~---- 356 (436)
T 4a8c_A 285 DIITSLNGKPLNSFAELRSRIATTEPG----TKVKLGLLRNGKPLEVEVTLDTSTSSSASAEMITPALEGATLSDG---- 356 (436)
T ss_pred CEEEEECCEECCCHHHHHHHHHHCCCC----CEEEEEEEECCEEEEEEEEECCCCCCCCCCCCCCCCCEEEECCCC----
T ss_conf 899998999988999999999725999----889999998999999999977777654332214567235524654----
Q ss_pred CCCCCCCCCEEEEEECCCCHHHHCCCCCCCEEEEECCEECCCHHHHHHHHHHCCCCCEEEEEEEEECCEEEEEEEEECCC
Q ss_conf 89999998289987438994433199888759999995369988999998718999769999998389289999975772
Q 001444 968 GFLPEEGHGVYVARWCHGSPVHRYGLYALQWIVEINGKRTPDLEAFVNVTKEIEHGEFVRVRTVHLNGKPRVLTLKQDLH 1047 (1076)
Q Consensus 968 ~~lp~~~~gV~V~~v~~gSpA~~~GL~~gD~I~~VNg~~v~~l~~f~~~v~~~~~~~~v~l~~v~r~g~~~~~tlk~~~~ 1047 (1076)
. ......|++|..+.++|||+++||++||+|++|||+++.++++|.++++.. +..+.|. +.|++..+.+++.+.+.
T Consensus 357 ~-~~~~~~gv~V~~V~~~spA~~aGL~~GD~I~~vng~~v~~~~~~~~~l~~~--~~~v~l~-v~R~g~~~~~~~~~~~~ 432 (436)
T 4a8c_A 357 Q-LKDGGKGIKIDEVVKGSPAAQAGLQKDDVIIGVNRDRVNSIAEMRKVLAAK--PAIIALQ-IVRGNESIYLLMRLEHH 432 (436)
T ss_pred C-CCCCCCCEEEEEECCCCHHHHCCCCCCCEEEEECCEECCCHHHHHHHHHHC--CCEEEEE-EEECCEEEEEEEEECCC
T ss_conf 5-667888779999679997998599999999998999878999999999728--9839999-99899999999976356
Q ss_pred C
Q ss_conf 4
Q 001444 1048 Y 1048 (1076)
Q Consensus 1048 y 1048 (1076)
+
T Consensus 433 ~ 433 (436)
T 4a8c_A 433 H 433 (436)
T ss_pred C
T ss_conf 7
No 5
>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A
Probab=1.00 E-value=1 Score=431.02 Aligned_cols=398 Identities=18% Similarity=0.172 Sum_probs=308.0
Q ss_pred CCCEEEEEEEEEEEECCCCC------------CCCCC------------CCCEEEEEEEEEEEECCCEEEEEECCCCCCC
Q ss_conf 34212211799999828633------------46896------------5560267999998408830899917311489
Q 001444 588 AESVIEPTLVMFEVHVPPSC------------MIDGV------------HSQHFFGTGVIIYHSQSMGLVVVDKNTVAIS 643 (1076)
Q Consensus 588 ~~~~~~~S~V~V~~~~~~~~------------~~d~~------------~~~~~~GsG~vid~~~~~G~IlTn~~~V~~~ 643 (1076)
..+++.||+|.|.+...... .+..+ ....+.||||||+ .++|||||| +||+.+
T Consensus 24 ~~~~~~pavv~i~~~~~~~~~~~~~~~~~~~~~~~~ff~~~~~~~~~~~~~~~~~GSGfiI~--~~~G~IlTn-~HVv~~ 100 (451)
T 3pv2_A 24 VLKNIMPAIVNVAVQGYLPNDVTPPGSAGNDEENQPNNRPPQSRMPEKGRKFESIGSGVIID--PNNGVIITN-DHVIRN 100 (451)
T ss_dssp HHHHHGGGEEEEEEEEECCC-----------------------------CEEEEEEEEEEEE--TTTTEEEEC-HHHHTT
T ss_pred HHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCEEEEEEEEE--CCCCEEEEC-HHHHCC
T ss_conf 99974894799999986325677753446656678643665666555676443247999998--999999978-699399
Q ss_pred CCCEEEEEECCCEEEEEEEEEEECCCCEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCEEEEEEECCCCCEEEEEEE
Q ss_conf 96189981148937928999950887389999879997865444101002068936899997999950899730344226
Q 001444 644 ASDVMLSFAAFPIEIPGEVVFLHPVHNFALIAYDPSSLGVAGASVVRAAELLPEPALRRGDSVYLVGLSRSLQATSRKSI 723 (1076)
Q Consensus 644 ~~~i~v~~~d~~~~~~a~vv~~dp~~dlAilk~d~~~~~~~~~~~v~~~~l~~~~~l~~G~~V~~iG~p~~~~~~~~~~~ 723 (1076)
+.++.|++.| ++.++|++++.|+.+|+||||+++..+++ ++|+++..++.|++|+++|||+++.......+
T Consensus 101 a~~i~V~~~d-g~~~~a~vv~~d~~~DlAlLkv~~~~l~~--------~~l~~s~~~~~G~~V~aiG~P~G~~~~~~~~~ 171 (451)
T 3pv2_A 101 ASLITVTLQD-GRRLKARLIGGDSETDLAVLKIDAKNLKS--------LVIGDSDKLEVGDFVVAIGNPFGLNSFGNSQS 171 (451)
T ss_dssp EEEEEEECTT-SCEEECEEEEEETTTTEEEEECCCSSCCC--------CCBCCGGGCCTTCEEEEEECCCCC-----CCE
T ss_pred CCEEEEEECC-CCEEEEEEEECCCCCCEEEEEECCCCCCE--------EEECCCCCCCCCCEEEEEECCCCCCCCCCCCC
T ss_conf 9889999769-97999999924757747999976867855--------67457244887998999989987566566773
Q ss_pred EECCCCEEECCCCCCCCCC-CCCEEEEEEECCCCC-CCCCEEECCCCEEEEEEEECCCCCCCCCCCCCCCEEEECCCHHH
Q ss_conf 8156200002888998543-342169998136588-86714877891299998102434102588987612484234566
Q 001444 724 VTNPCAALNISSADCPRYR-AMNMEVIELDTDFGS-TFSGVLTDEHGRVQAIWGSFSTQVKFGCSSSEDHQFVRGIPIYT 801 (1076)
Q Consensus 724 vt~i~~~~~i~~~~~~~~~-~~~~~~i~~da~ig~-~sGGpL~d~~G~VvGi~~~~~~~~~~g~~~~~~~~~~~aipi~~ 801 (1076)
++ .+.+++..+..+. ..+..+||+|+++++ +|||||+|.+|+|+||+++.... .....++.||||++.
T Consensus 172 vt----~Givs~~~r~~~~~~~~~~~iqtda~i~~GnSGGPl~n~~G~VIGI~t~~~~~------~~~~~g~gfaIP~~~ 241 (451)
T 3pv2_A 172 AT----FGIVSALKRSDLNIEGVENFIQTDAAINPGNSGGALVNAKGELIGINTAILSP------YGGNVGIGFAIPINM 241 (451)
T ss_dssp EE----EEEEEEEC----------CCEEESSCCCGGGTTSEEEETTCCEEEEEECCC------------CCCEEEEEHHH
T ss_pred EE----EEEEEECCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEEECC------CCCCCCEEEEEHHHH
T ss_conf 56----79994313355577774138998445279987482518897499999686637------888532444400688
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCHHHHHHCCCCHHHHHHHHHCCCCCCCEEEEEEECCCCHHH
Q ss_conf 99999998639999964225644689820265118998274768770999999999986099840039999755999776
Q 001444 802 ISRVLDKIISGASGPSLLINGVKRPMPLVRILEVELYPTLLSKARSFGLSDDWVQALVKKDPVRRQVLRVKGCLAGSKAE 881 (1076)
Q Consensus 802 i~~~l~~l~~~~~~~~~~~~~v~r~~p~~~~Lgv~~~~i~~~~a~~~G~~~~wi~~~~~~~~~~~~~~~V~~v~~~s~A~ 881 (1076)
+++++++|+++++ +.|+ |||+.++.++...++.+|++.. .++++|..|.++|||+
T Consensus 242 ~~~~~~~l~~~g~--------v~r~-----~lGv~~~~~~~~~a~~~gl~~~------------~~G~~V~~V~~~spA~ 296 (451)
T 3pv2_A 242 VKDVAQQIIKFGS--------IHRG-----LMGIFVQHLTPELAQAMGYPED------------FQGALVSQVNPNSPAE 296 (451)
T ss_dssp HHHHHHHHHHHSS--------CCCC-----BCCEEEEECCHHHHHHTTSCTT------------CCCEEEEEECTTSHHH
T ss_pred HHHHHHHHHHCCC--------CCCC-----CCCCEEEECCHHHHHHCCCCCC------------CCEEEEEECCCCCHHH
T ss_conf 9999999986297--------6456-----6661678652989986299867------------8508999558998688
Q ss_pred HH-CCCCCEEEEECCEECCCHHHHHHHHHHCCCCCCCCCEEEEEEEECCEEEEEEEECCCCCCCCC---CCEEEECCCCC
Q ss_conf 61-348999999899871886679999882268999997599999949989999995001589997---61441047411
Q 001444 882 NM-LEQGDMMLAINKQPVTCFHDIENACQALDKDGEDNGKLDITIFRQGREIELQVGTDVRDGNGT---TRVINWCGCIV 957 (1076)
Q Consensus 882 ~a-L~~GDiIlsVnG~~V~~~~dl~~~l~~~~~g~~~~~~v~l~V~R~g~~~~v~v~l~~~~~~~t---~~~~~~~G~~~ 957 (1076)
++ |+.||+|++|||++|.++.++...+....+| +++.++|+|+|+++++.+++...+.... .....+.|+.+
T Consensus 297 ~aGL~~GDvI~~vnG~~v~~~~~l~~~l~~~~~g----~~v~l~V~R~g~~~~~~v~l~~~~~~~~~~~~~~~~~~G~~l 372 (451)
T 3pv2_A 297 LAGLKAGDIITQINDTKITQATQVKTTISLLRVG----STVKIIVERDNKPLTLSAVVTDIKSHEQKLQSNNPFLYGLAL 372 (451)
T ss_dssp HHTCCTTCEEEEETTEECCSHHHHHHHHHTSCTT----CEEEEEEEETTEEEEEEEECBCHHHHHHHHHHHSTTTTTEEE
T ss_pred HCCCCCCCEEEEECCEECCCHHHHHHHHHHCCCC----CEEEEEEEECCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCC
T ss_conf 7599999999988999927899999999715899----889999999999999999975577654433223545343101
Q ss_pred CCCCHHHHHCCCCCCCCCCEEEEEECCCCHHHHCCCCCCCEEEEECCEECCCHHHHHHHHHHCCCCCEEEEEEEEECCEE
Q ss_conf 38947676328999999828998743899443319988875999999536998899999871899976999999838928
Q 001444 958 QDPHPAVRALGFLPEEGHGVYVARWCHGSPVHRYGLYALQWIVEINGKRTPDLEAFVNVTKEIEHGEFVRVRTVHLNGKP 1037 (1076)
Q Consensus 958 ~~p~~~~~~~~~lp~~~~gV~V~~v~~gSpA~~~GL~~gD~I~~VNg~~v~~l~~f~~~v~~~~~~~~v~l~~v~r~g~~ 1037 (1076)
.......+. . ....|++|.++.++|||+++||++||+|++|||+++.++++|.++++. .++.+.|. +.|++..
T Consensus 373 ~~~~~~~~~---~-~~~~Gv~V~~V~~gspA~~aGL~~GD~I~~Vng~~v~~~~~~~~~l~~--~~~~v~l~-v~R~g~~ 445 (451)
T 3pv2_A 373 RAFEQESPP---H-GNVIGVQVVGASENSAGWRAGIRPGDIIISANKKPVTDVKSLQTIAQE--KKKELLVQ-VLRGPGS 445 (451)
T ss_dssp EEEEEECTT---S-CEEEEEEEEEECTTSHHHHHTCCTTCEEEEETTEECCSHHHHHHHTTS--SCSCEEEE-EEETTEE
T ss_pred CCCCHHHHC---C-CCCCCEEEEEECCCCHHHHCCCCCCCEEEEECCEECCCHHHHHHHHHC--CCCEEEEE-EEECCEE
T ss_conf 548856741---2-688840899889999799849999999999899987899999999863--79759999-9989999
Q ss_pred EEEEEE
Q ss_conf 999997
Q 001444 1038 RVLTLK 1043 (1076)
Q Consensus 1038 ~~~tlk 1043 (1076)
+++++.
T Consensus 446 ~~v~l~ 451 (451)
T 3pv2_A 446 MYLLVI 451 (451)
T ss_dssp EEEEEC
T ss_pred EEEEEC
T ss_conf 999969
No 6
>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A
Probab=1.00 E-value=1 Score=426.91 Aligned_cols=377 Identities=19% Similarity=0.337 Sum_probs=303.2
Q ss_pred CCCHHHHHHHHHCCCEEEEEEEEEE-------------CCCCCC----------------------------CCCCEEEE
Q ss_conf 8404999998839960999986641-------------269899----------------------------98837999
Q 001444 34 TADDWRKALNKVVPAVVVLRTTACR-------------AFDTEA----------------------------AGASYATG 72 (1076)
Q Consensus 34 ~~~~~~~~~~~v~~svV~I~~~~~~-------------~~d~~~----------------------------~~~~~gTG 72 (1076)
..++|..+++++.||||.|.+.... .|+... ...+.|||
T Consensus 11 ~~~~~~~~~~~~~pavV~i~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GSG 90 (448)
T 1ky9_A 11 QMPSLAPMLEKVMPSVVSINVEGSTTVNTPRMPRNFQQFFGDDSPFCQEGSPFQSSPFCQGGQGGNGGGQQQKFMALGSG 90 (448)
T ss_dssp CCCCSHHHHHHHGGGEEEEEEEEEEEECCCCSSCCTTCCCC---------------------------CEEEEEEEEEEE
T ss_pred CCCCHHHHHHHHCCCEEEEEEEEEECCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE
T ss_conf 78668999987289679999998752667766245566402445443334433333323345444444456632517999
Q ss_pred EEEECCCCEEEECCCCCCCCCCEEEEEECCCCEEEEEEEEECCCCCEEEEEECC-CCCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 999289829993754369999079999639909989999964989599999948-9975223468889986788999999
Q 001444 73 FVVDKRRGIILTNRHVVKPGPVVAEAMFVNREEIPVYPIYRDPVHDFGFFRYDP-SAIQFLNYDEIPLAPEAACVGLEIR 151 (1076)
Q Consensus 73 fvV~~~~G~IlT~~Hvv~~~~~~~~v~~~~~~~~~a~vv~~D~~~DlAiLk~~~-~~~~~~~~~~~~l~~~~~~~G~~v~ 151 (1076)
|+|++++||||||+|||. +...+.+.+.+++.++|++++.|+.+|||+|+++. ..++++.++. +..+++|++|+
T Consensus 91 ~ii~~~~g~IlTn~HVv~-~a~~i~V~~~dg~~~~a~vv~~d~~~DlAvlkv~~~~~~~~~~l~~----s~~~~~G~~V~ 165 (448)
T 1ky9_A 91 VIIDADKGYVVTNNHVVD-NATVIKVQLSDGRKFDAKMVGKDPRSDIALIQIQNPKNLTAIKMAD----SDALRVGDYTV 165 (448)
T ss_dssp EEEETTTTEEEEEHHHHT-TEEEEEEEETTSCEEEEEEEEEETTTTEEEEEESSCCSCCCCCBCC----GGGCCTTCEEE
T ss_pred EEEECCCCEEEECHHHHC-CCCEEEEEECCCCEEEEEEEEECCCCCEEEEEECCCCCCCEEEECC----CCCCCCCCEEE
T ss_conf 999899899997758949-9987999978997999999997588998999966889982688446----03488899799
Q ss_pred EEECCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCEECCCCCEEEEEECCCCC----CCCC
Q ss_conf 995189998807997998744798888888865566036999333689997890542888399982033589----9973
Q 001444 152 VVGNDSGEKVSILAGTLARLDRDAPHYKKDGYNDFNTFYMQAASGTKGGSSGSPVIDWQGRAVALNAGSKSS----SASA 227 (1076)
Q Consensus 152 ~iG~p~g~~~s~~~G~is~~~~~~p~~~~~~~~~~~~~~i~~~a~~~~G~SGgpv~n~~G~vVGi~~~~~~~----~~~~ 227 (1076)
++|||+|...+++.|+++++.|.. +....+.+ +||+++.+++|+|||||+|.+|+||||++..... .+++
T Consensus 166 aiG~P~g~~~tvt~Givs~~~r~~--~~~~~~~~----~iqtda~i~~GnSGGpl~n~~G~vvGI~~~~~~~~~~~~g~g 239 (448)
T 1ky9_A 166 AIGNPFGLGETVTSGIVSALGRSG--LNAENYEN----FIQTDAAINRGNAGGALVNLNGELIGINTAILAPDGGNIGIG 239 (448)
T ss_dssp EEECTTSSSCEEEEEEEEEESSCC-------CCC----CEEESCCCTTSCCCSEEECTTSCEEEEEECSSTTSCCCSSSE
T ss_pred EEECCCCCCCEEEEEEEEECCCCC--CCCCCCCC----EEEECCCCCCCCCCCEEECCCCEEEEEEEEEECCCCCCCCEE
T ss_conf 998888888718868995035565--57777567----799837878977788368779889999877535888745324
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCCCCCCEECCCCCCCCEEEEECCHHHHHHCCCCHHHHHHHHCCCCCCCCCEEEEEEECC
Q ss_conf 33277999999999994497654554100147776364999939367777199835798664079999876799977459
Q 001444 228 FFLPLERVVRALRFLQERRDCNIHNWEAVSIPRGTLQVTFVHKGFDETRRLGLQSATEQMVRHASPPGETGLLVVDSVVP 307 (1076)
Q Consensus 228 f~lP~~~i~~~l~~l~~~~~~~~~~~~~~~~~rg~lg~~~~~~~~~~~r~lGl~~~~~~~~~~~~~~~~~G~lvv~~V~~ 307 (1076)
|+||++.+++++++|.+++ .+.|++||+.++....+.++.||++ ...|++| ..|.+
T Consensus 240 faIP~~~~~~~~~~l~~~g----------~v~~~~LGv~~~~~~~~~a~~lgl~-------------~~~G~~V-~~V~~ 295 (448)
T 1ky9_A 240 FAIPSNMVKNLTSQMVEYG----------QVKRGELGIMGTELNSELAKAMKVD-------------AQRGAFV-SQVLP 295 (448)
T ss_dssp EEEEHHHHHHHHHHHHHHS----------SCCBCCCCCSCCCTTSHHHHTSCCT-------------TCCSEEC-CCCTT
T ss_pred EEEECCCCHHHHHHHHHHC----------CCCEECCCCCCCCCCHHHHHHHCCC-------------CCCCEEE-EEECC
T ss_conf 2563032011499986421----------2410024432344459999971899-------------8884699-99455
Q ss_pred CCCCCC-CCCCCCEEEEECCEEECCHHHHHHHHHC-CCCCEEEEEEEECCEEEEEEEEECCCCCCC---CCCCCCCCCEE
Q ss_conf 990014-9999989999999970896679998832-899859999996996999999951488888---77521137619
Q 001444 308 GGPAHL-RLEPGDVLVRVNGEVITQFLKLETLLDD-GVDKNIELLIERGGISMTVNLVVQDLHSIT---PDYFLEVSGAV 382 (1076)
Q Consensus 308 ~spA~~-gL~~GD~Il~VnG~~v~~~~~l~~~l~~-~~g~~v~l~v~R~g~~~~~~i~~~~~~~~~---~~~~~~~~G~~ 382 (1076)
+|||++ ||+.||+|++|||+.+.++.++..++.. .+|++++++|.|+|+..++++++...+... ........|+.
T Consensus 296 gspA~~AGL~~GDvI~~inG~~v~~~~~l~~~l~~~~~g~~v~l~v~R~g~~~~~~v~~~~~~~~~~~~~~~~~~~~G~~ 375 (448)
T 1ky9_A 296 NSSAAKAGIKAGDVITSLNGKPISSFAALRAQVGTMPVGSKLTLGLLRDGKQVNVNLELQQSSQNQVDSSSIFNGIEGAE 375 (448)
T ss_dssp CSSSTTTTCCTTCEECBSSSSBCCSSHHHHHHTTSSBTTCCCEEEEESSSCEEECCCC----------------------
T ss_pred CCHHHHCCCCCCCEEEEECCEECCCHHHHHHHHHHCCCCCEEEEEEEECCEEEEEEEEEECCCCCCCCCCCCCCCCCCEE
T ss_conf 89789718999999999899995887999999984699987999999999999999999347776555445543102137
Q ss_pred EECCCHHHHHCCCCCCCEEEEE--CCCCHHHHCCCCCCCEEEECCCEECCCHHHHHHHHHHCCCCCEEEEEEEECC
Q ss_conf 8049988772067788809998--6898456759999979998099204998899999984499973769997504
Q 001444 383 IHPLSYQQARNFRFPCGLVYVA--EPGYMLFRAGVPRHAIIKKFAGEEISRLEDLISVLSKLSRGARVPIEYSSYT 456 (1076)
Q Consensus 383 ~~~ls~~~~~~~~~~~~gv~v~--~~~s~a~~aGl~~Gd~I~~Vng~~v~~l~~~v~~i~~~~~g~~V~i~~~~~~ 456 (1076)
+.++. +..|++|. .++++|+++||+.||+|++|||+++.++++|.+.++..+ + .+.+.+.|.+
T Consensus 376 l~~~~---------~~~gv~V~~V~~gspA~~aGL~~GDiI~~vng~~v~~~~~l~~~l~~~~-~-~v~l~v~R~g 440 (448)
T 1ky9_A 376 MSNKG---------KDQGVVVNNVKTGTPAAQIGLKKGDVIIGANQQAVKNIAELRKVLDSKP-S-VLALNIQRGD 440 (448)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred EECCC---------CCCEEEEEEECCCCHHHHCCCCCCCEEEEECCEECCCHHHHHHHHHCCC-C-EEEEEEEECC
T ss_conf 62157---------8975999995689979986999999999989998789999999997589-7-5999999899
No 7
>4fln_A Protease DO-like 2, chloroplastic; protease, DEG, PDZ, hydrolase; 2.80A {Arabidopsis thaliana}
Probab=1.00 E-value=1 Score=426.89 Aligned_cols=391 Identities=15% Similarity=0.112 Sum_probs=308.0
Q ss_pred EEEEEEEEEEEECCCCCC---CCCCCCCEEEEEEEEEEEECCCEEEEEECCCCCCCCCCEEEEEE-CCCEEEEEEEEEEE
Q ss_conf 122117999998286334---68965560267999998408830899917311489961899811-48937928999950
Q 001444 591 VIEPTLVMFEVHVPPSCM---IDGVHSQHFFGTGVIIYHSQSMGLVVVDKNTVAISASDVMLSFA-AFPIEIPGEVVFLH 666 (1076)
Q Consensus 591 ~~~~S~V~V~~~~~~~~~---~d~~~~~~~~GsG~vid~~~~~G~IlTn~~~V~~~~~~i~v~~~-d~~~~~~a~vv~~d 666 (1076)
...+|+|.|.+......+ +.......+.||||||+ +|||||| +||+.++..+.|++. | ++.++|++++.|
T Consensus 45 ~~~~sVV~I~~~~~~~~~~~Pw~~~~~~~s~GSGfiI~----dG~IlTN-~HVV~~a~~i~V~~~~d-g~~~~A~vv~~D 118 (539)
T 4fln_A 45 SFLNAVVKVYCTHTAPDYSLPWQKQRQFTSTGSAFMIG----DGKLLTN-AHCVEHDTQVKVKRRGD-DRKYVAKVLVRG 118 (539)
T ss_dssp HHHTTEEEEEEEECCBCSSSTTSBCCCEEEEEEEEEEE----TTEEEEC-GGGGTTEEEEEEECTTC-CCCEEEEEEEEE
T ss_pred CCCCCEEEEEEEECCCCCCCCCCCCCCCCEEEEEEEEE----CCEEEEC-HHHCCCCCEEEEEECCC-CEEEEEEEEEEC
T ss_conf 14787699997764778778541478660679999997----9999978-68828998699999269-979999999977
Q ss_pred CCCCEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCEEEEEEECCCCCEEEEEEEEECCCCEEECCCCCCCCCC--CC
Q ss_conf 8873899998799978654441010020689368999979999508997303442268156200002888998543--34
Q 001444 667 PVHNFALIAYDPSSLGVAGASVVRAAELLPEPALRRGDSVYLVGLSRSLQATSRKSIVTNPCAALNISSADCPRYR--AM 744 (1076)
Q Consensus 667 p~~dlAilk~d~~~~~~~~~~~v~~~~l~~~~~l~~G~~V~~iG~p~~~~~~~~~~~vt~i~~~~~i~~~~~~~~~--~~ 744 (1076)
+.+|+||||++...++ ..+.++.++++ .+.|++|++||||+++.. .++| .|++++..+..+. ..
T Consensus 119 ~~~DLAvLkv~~~~~~----~~~~pl~~g~~--~~vGd~V~aiG~P~g~~~----~tvT----~GIVSa~~r~~~~~~~~ 184 (539)
T 4fln_A 119 VDCDIALLSVESEDFW----KGAEPLRLGHL--PRLQDSVTVVGYPLGGDT----ISVT----KGVVSRIEVTSYAHGSS 184 (539)
T ss_dssp TTTTEEEEEECCSSSS----TTCCCCCBCCC--CCTTCEEEEEECCSSSCC----CEEE----EEEEEEEEEEECTTSCC
T ss_pred CCCCEEEEEEECCCCC----CCCCEEECCCC--CCCCCEEEEEECCCCCCC----CCEE----EEEECCCCCCCCCCCCC
T ss_conf 9988899998077677----67845425886--767996999986899998----7678----47987564444578874
Q ss_pred CEEEEEEECCCCC-CCCCEEECCCCEEEEEEEECCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 2169998136588-867148778912999981024341025889876124842345669999999863999996422564
Q 001444 745 NMEVIELDTDFGS-TFSGVLTDEHGRVQAIWGSFSTQVKFGCSSSEDHQFVRGIPIYTISRVLDKIISGASGPSLLINGV 823 (1076)
Q Consensus 745 ~~~~i~~da~ig~-~sGGpL~d~~G~VvGi~~~~~~~~~~g~~~~~~~~~~~aipi~~i~~~l~~l~~~~~~~~~~~~~v 823 (1076)
...+||+|+++++ ||||||+|.+|+||||+++.... ....+.+ ||||++.+++++++|++.|+ +
T Consensus 185 ~~~~IQtDAaInpGnSGGPLvn~~GeVIGIntai~~~-----~~~~gig--fAIP~~~v~~vl~~l~~~G~--------~ 249 (539)
T 4fln_A 185 DLLGIQIDAAINPGNSGGPAFNDQGECIGVAFQVYRS-----EETENIG--YVIPTTVVSHFLTDYERNGK--------Y 249 (539)
T ss_dssp EEEEEEESSCCCTTTTTSEEECSSSCEEEEECCCC----------CCCE--EEEEHHHHHHHHHHHHTTTS--------C
T ss_pred CEEEEEEEEEECCCCCCCHHCCCCCCEEEEEEEEECC-----CCCCCCE--ECCCHHHHHHHHHHHHHCCE--------E
T ss_conf 1569999768659983344003799689899888437-----8888630--00319999999999997692--------7
Q ss_pred C-CCCCCEEEEEEEEEEC-CHHHHHHCCCCHHHHHHHHHCCCCCCCEEEEEEECCCCHHHHHCCCCCEEEEECCEECCCH
Q ss_conf 4-6898202651189982-7476877099999999998609984003999975599977661348999999899871886
Q 001444 824 K-RPMPLVRILEVELYPT-LLSKARSFGLSDDWVQALVKKDPVRRQVLRVKGCLAGSKAENMLEQGDMMLAINKQPVTCF 901 (1076)
Q Consensus 824 ~-r~~p~~~~Lgv~~~~i-~~~~a~~~G~~~~wi~~~~~~~~~~~~~~~V~~v~~~s~A~~aL~~GDiIlsVnG~~V~~~ 901 (1076)
. |+ |||+.++.+ +...++.+|++.. +|++|..|.++|||+++|+.||+|+++||++|.+.
T Consensus 250 ~~r~-----~LGv~~~~~~~~~~~~~~~l~~~-------------~Gv~V~~V~~~spA~~al~~GDvI~~idg~~V~~~ 311 (539)
T 4fln_A 250 TGYP-----CLGVLLQKLENPALRECLKVPTN-------------EGVLVRRVEPTSDASKVLKEGDVIVSFDDLHVGCE 311 (539)
T ss_dssp CCCC-----BCCEEEEECCCHHHHHHHTCSSS-------------BCEEEEEECTTSGGGGTCCTTCEEEEETTEECBSS
T ss_pred EEEE-----ECCEEEEECCCHHHHHHCCCCCC-------------CCEEEECCCCCCHHHHCCCCCCEEEEECCEEECCC
T ss_conf 8531-----03568786479999986079976-------------75044000689958947667989997899996858
Q ss_pred HH----------HHHHHHHCCCCCCCCCEEEEEEEECCEEEEEEEECCCCCCC-------CCCCEEEECCCCCCCCCHHH
Q ss_conf 67----------99998822689999975999999499899999950015899-------97614410474113894767
Q 001444 902 HD----------IENACQALDKDGEDNGKLDITIFRQGREIELQVGTDVRDGN-------GTTRVINWCGCIVQDPHPAV 964 (1076)
Q Consensus 902 ~d----------l~~~l~~~~~g~~~~~~v~l~V~R~g~~~~v~v~l~~~~~~-------~t~~~~~~~G~~~~~p~~~~ 964 (1076)
.+ |..++..+.+| ++++++|+|+|+++++.|++...+.. ....+..++|+.++.+....
T Consensus 312 g~~~~~~~~~~~l~~~v~~~~~G----d~v~l~v~R~Gk~~~v~Vtl~~~~~~~~~~~~~~~p~~~~~~Gl~f~~Lt~~~ 387 (539)
T 4fln_A 312 GTVPFRSSERIAFRYLISQKFAG----DIAEIGIIRAGEHKKVQVVLRPRVHLVPYHIDGGQPSYIIVAGLVFTPLSEPL 387 (539)
T ss_dssp SEEECSTTCEEETHHHHHTSCTT----CEEEEEEEETTEEEEEEEECBCCCCSSCSCTTSSCCCCCCSTTEEEEECCHHH
T ss_pred CEECCCCCHHHHHHHHHHCCCCC----CEEEEEEEECCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHH
T ss_conf 72033430168999999707989----87999999899899999997358655531124689741110663885089999
Q ss_pred HHC-C----------------CCCCCCCCEEEEEECCCCHHHHCCCCCCCEEEEECCEECCCHHHHHHHHHHCCCCCEEE
Q ss_conf 632-8----------------99999982899874389944331998887599999953699889999987189997699
Q 001444 965 RAL-G----------------FLPEEGHGVYVARWCHGSPVHRYGLYALQWIVEINGKRTPDLEAFVNVTKEIEHGEFVR 1027 (1076)
Q Consensus 965 ~~~-~----------------~lp~~~~gV~V~~v~~gSpA~~~GL~~gD~I~~VNg~~v~~l~~f~~~v~~~~~~~~v~ 1027 (1076)
.+. . ....+.++|+|++|.++++|.+||+++||.|++|||++|.++++|.+++++.+ +++++
T Consensus 388 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~gVvvs~V~~~s~a~~~g~~~gdiI~~vNg~~V~s~~~l~~~l~~~k-~~~l~ 466 (539)
T 4fln_A 388 IEEECEDTIGLKLLTKARYSVARFRGEQIVILSQVLANEVNIGYEDMNNQQVLKFNGIPIRNIHHLAHLIDMCK-DKYLV 466 (539)
T ss_dssp HTTSCSSSSCHHHHHHHHHCCCSSTTCCCEEEEEECCCGGGTTCSSCCSEEEEEETTEECCSHHHHHHHHHTCC-SSEEE
T ss_pred HHHHCCCCCCCEEEEHHHHHHHCCCCCEEEEEEEECCCCHHHHCCCCCCCEEEEECCEECCCHHHHHHHHHHCC-CCEEE
T ss_conf 97422456671433100000100379608999986588535543788999899489987699999999999748-97599
Q ss_pred EEEEEECCEEEEEE
Q ss_conf 99998389289999
Q 001444 1028 VRTVHLNGKPRVLT 1041 (1076)
Q Consensus 1028 l~~v~r~g~~~~~t 1041 (1076)
+++ .++...++.
T Consensus 467 ~~~--~~~~~ivL~ 478 (539)
T 4fln_A 467 FEF--EDNYVAVLE 478 (539)
T ss_dssp EEE--TTSCEEEEE
T ss_pred EEE--CCCEEEEEE
T ss_conf 997--899799998
No 8
>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A
Probab=1.00 E-value=1 Score=412.97 Aligned_cols=357 Identities=19% Similarity=0.275 Sum_probs=286.2
Q ss_pred EEEEEEEEEEEECCCEEEEEECCCCCCCCCCEEEEEECCCEEEEEEEEEEECCCCEEEEEEC-CCCCCCCCCCCEEEEEC
Q ss_conf 02679999984088308999173114899618998114893792899995088738999987-99978654441010020
Q 001444 616 HFFGTGVIIYHSQSMGLVVVDKNTVAISASDVMLSFAAFPIEIPGEVVFLHPVHNFALIAYD-PSSLGVAGASVVRAAEL 694 (1076)
Q Consensus 616 ~~~GsG~vid~~~~~G~IlTn~~~V~~~~~~i~v~~~d~~~~~~a~vv~~dp~~dlAilk~d-~~~~~~~~~~~v~~~~l 694 (1076)
...||||+|+ .+.|||||| +||..++..+.|++.| ++.++|++++.|+.+|+||||++ +..+++ ++|
T Consensus 85 ~~~GSG~ii~--~~~g~IlTn-~HVv~~a~~i~V~~~d-g~~~~a~vv~~d~~~DlAvlkv~~~~~~~~--------~~l 152 (448)
T 1ky9_A 85 MALGSGVIID--ADKGYVVTN-NHVVDNATVIKVQLSD-GRKFDAKMVGKDPRSDIALIQIQNPKNLTA--------IKM 152 (448)
T ss_dssp EEEEEEEEEE--TTTTEEEEE-HHHHTTEEEEEEEETT-SCEEEEEEEEEETTTTEEEEEESSCCSCCC--------CCB
T ss_pred CCEEEEEEEE--CCCCEEEEC-HHHHCCCCEEEEEECC-CCEEEEEEEEECCCCCEEEEEECCCCCCCE--------EEE
T ss_conf 5179999998--998999977-5894999879999789-979999999975889989999668899826--------884
Q ss_pred CCCCCCCCCCEEEEEEECCCCCEEEEEEEEECCCCEEECCCCCCCCCC-CCCEEEEEEECCCCC-CCCCEEECCCCEEEE
Q ss_conf 689368999979999508997303442268156200002888998543-342169998136588-867148778912999
Q 001444 695 LPEPALRRGDSVYLVGLSRSLQATSRKSIVTNPCAALNISSADCPRYR-AMNMEVIELDTDFGS-TFSGVLTDEHGRVQA 772 (1076)
Q Consensus 695 ~~~~~l~~G~~V~~iG~p~~~~~~~~~~~vt~i~~~~~i~~~~~~~~~-~~~~~~i~~da~ig~-~sGGpL~d~~G~VvG 772 (1076)
+++..++.||+|+++|||+++....+.++++ +..+..+. .....+||+|+++++ +|||||+|.+|+|+|
T Consensus 153 ~~s~~~~~G~~V~aiG~P~g~~~tvt~Givs---------~~~r~~~~~~~~~~~iqtda~i~~GnSGGpl~n~~G~vvG 223 (448)
T 1ky9_A 153 ADSDALRVGDYTVAIGNPFGLGETVTSGIVS---------ALGRSGLNAENYENFIQTDAAINRGNAGGALVNLNGELIG 223 (448)
T ss_dssp CCGGGCCTTCEEEEEECTTSSSCEEEEEEEE---------EESSCC-----CCCCEEESCCCTTSCCCSEEECTTSCEEE
T ss_pred CCCCCCCCCCEEEEEECCCCCCCEEEEEEEE---------ECCCCCCCCCCCCCEEEECCCCCCCCCCCEEECCCCEEEE
T ss_conf 4603488899799998888888718868995---------0355655777756779983787897778836877988999
Q ss_pred EEEECCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCHHHHHHCCCCH
Q ss_conf 98102434102588987612484234566999999986399999642256446898202651189982747687709999
Q 001444 773 IWGSFSTQVKFGCSSSEDHQFVRGIPIYTISRVLDKIISGASGPSLLINGVKRPMPLVRILEVELYPTLLSKARSFGLSD 852 (1076)
Q Consensus 773 i~~~~~~~~~~g~~~~~~~~~~~aipi~~i~~~l~~l~~~~~~~~~~~~~v~r~~p~~~~Lgv~~~~i~~~~a~~~G~~~ 852 (1076)
|+++..... + ...+.+ ||||++.+++++++|+++++ +.|+ |||+.++.++...++.+|++.
T Consensus 224 I~~~~~~~~--~--~~~g~g--faIP~~~~~~~~~~l~~~g~--------v~~~-----~LGv~~~~~~~~~a~~lgl~~ 284 (448)
T 1ky9_A 224 INTAILAPD--G--GNIGIG--FAIPSNMVKNLTSQMVEYGQ--------VKRG-----ELGIMGTELNSELAKAMKVDA 284 (448)
T ss_dssp EEECSSTTS--C--CCSSSE--EEEEHHHHHHHHHHHHHHSS--------CCBC-----CCCCSCCCTTSHHHHTSCCTT
T ss_pred EEEEEECCC--C--CCCCEE--EEEECCCCHHHHHHHHHHCC--------CCEE-----CCCCCCCCCCHHHHHHHCCCC
T ss_conf 987753588--8--745324--25630320114999864212--------4100-----244323444599999718998
Q ss_pred HHHHHHHHCCCCCCCEEEEEEECCCCHHHHH-CCCCCEEEEECCEECCCHHHHHHHHHHCCCCCCCCCEEEEEEEECCEE
Q ss_conf 9999998609984003999975599977661-348999999899871886679999882268999997599999949989
Q 001444 853 DWVQALVKKDPVRRQVLRVKGCLAGSKAENM-LEQGDMMLAINKQPVTCFHDIENACQALDKDGEDNGKLDITIFRQGRE 931 (1076)
Q Consensus 853 ~wi~~~~~~~~~~~~~~~V~~v~~~s~A~~a-L~~GDiIlsVnG~~V~~~~dl~~~l~~~~~g~~~~~~v~l~V~R~g~~ 931 (1076)
. .+++|..|.++|||+++ |+.||+|++|||++|.++.++...+....+| +++.++|+|+|+.
T Consensus 285 ~-------------~G~~V~~V~~gspA~~AGL~~GDvI~~inG~~v~~~~~l~~~l~~~~~g----~~v~l~v~R~g~~ 347 (448)
T 1ky9_A 285 Q-------------RGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPISSFAALRAQVGTMPVG----SKLTLGLLRDGKQ 347 (448)
T ss_dssp C-------------CSEECCCCTTCSSSTTTTCCTTCEECBSSSSBCCSSHHHHHHTTSSBTT----CCCEEEEESSSCE
T ss_pred C-------------CCEEEEEECCCCHHHHCCCCCCCEEEEECCEECCCHHHHHHHHHHCCCC----CEEEEEEEECCEE
T ss_conf 8-------------8469999455897897189999999998999958879999999846999----8799999999999
Q ss_pred EEEEEECCCCCCCC---CCCEEEECCCCCCCCCHHHHHCCCCCCCCCCEEEEEECCCCHHHHCCCCCCCEEEEECCEECC
Q ss_conf 99999500158999---761441047411389476763289999998289987438994433199888759999995369
Q 001444 932 IELQVGTDVRDGNG---TTRVINWCGCIVQDPHPAVRALGFLPEEGHGVYVARWCHGSPVHRYGLYALQWIVEINGKRTP 1008 (1076)
Q Consensus 932 ~~v~v~l~~~~~~~---t~~~~~~~G~~~~~p~~~~~~~~~lp~~~~gV~V~~v~~gSpA~~~GL~~gD~I~~VNg~~v~ 1008 (1076)
+++.+++...+... ......++|+.++... ...|++|..+.++|||+++||++||.|++|||+++.
T Consensus 348 ~~~~v~~~~~~~~~~~~~~~~~~~~G~~l~~~~-----------~~~gv~V~~V~~gspA~~aGL~~GDiI~~vng~~v~ 416 (448)
T 1ky9_A 348 VNVNLELQQSSQNQVDSSSIFNGIEGAEMSNKG-----------KDQGVVVNNVKTGTPAAQIGLKKGDVIIGANQQAVK 416 (448)
T ss_dssp EECCCC--------------------------------------------------------------------------
T ss_pred EEEEEEEECCCCCCCCCCCCCCCCCCEEEECCC-----------CCCEEEEEEECCCCHHHHCCCCCCCEEEEECCEECC
T ss_conf 999999934777655544554310213762157-----------897599999568997998699999999998999878
Q ss_pred CHHHHHHHHHHCCCCCEEEEEEEEECCEEEEEEEE
Q ss_conf 98899999871899976999999838928999997
Q 001444 1009 DLEAFVNVTKEIEHGEFVRVRTVHLNGKPRVLTLK 1043 (1076)
Q Consensus 1009 ~l~~f~~~v~~~~~~~~v~l~~v~r~g~~~~~tlk 1043 (1076)
++++|.++++..+ + .+.|. +.|++..++++++
T Consensus 417 ~~~~l~~~l~~~~-~-~v~l~-v~R~g~~~~~~l~ 448 (448)
T 1ky9_A 417 NIAELRKVLDSKP-S-VLALN-IQRGDSTIYLLMQ 448 (448)
T ss_dssp -----------------------------------
T ss_pred CHHHHHHHHHCCC-C-EEEEE-EEECCEEEEEEEC
T ss_conf 9999999997589-7-59999-9989999999959
No 9
>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone, DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}
Probab=1.00 E-value=1 Score=374.80 Aligned_cols=307 Identities=21% Similarity=0.341 Sum_probs=261.5
Q ss_pred CCCCCHHHHHHHHHCCCEEEEEEEEEE------------CCCC------CCCCCCEEEEEEEECCCCEEEECCCCCCCCC
Q ss_conf 668404999998839960999986641------------2698------9998837999999289829993754369999
Q 001444 32 VATADDWRKALNKVVPAVVVLRTTACR------------AFDT------EAAGASYATGFVVDKRRGIILTNRHVVKPGP 93 (1076)
Q Consensus 32 ~~~~~~~~~~~~~v~~svV~I~~~~~~------------~~d~------~~~~~~~gTGfvV~~~~G~IlT~~Hvv~~~~ 93 (1076)
++..++|..+++++.||||.|.+.... .|+. .....+.||||+|++++||||||+||+. +.
T Consensus 9 ~~~~~~~~~~~~~~~paVV~I~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~GSGfiI~~~~G~IlTnaHVv~-~~ 87 (345)
T 3stj_A 9 QAPLPSLAPMLEKVLPAVVSVRVEGTASQGQKIPEEFKKFFGDDLPDQPAQPFEGLGSGVIINASKGYVLTNNHVIN-QA 87 (345)
T ss_dssp --CCCBSHHHHHHHGGGEEEEEEEEC------------------------CCEEEEEEEEEEETTTTEEEECHHHHT-TE
T ss_pred CCCCCCHHHHHHHHCCCEEEEEEEEEECCCCCCCHHHHHHCCCCCCCCCCCCCCEEEEEEEEECCCCEEEECHHHHC-CC
T ss_conf 57887899999873895799999875225666751556642555654457666526999999899798997769949-99
Q ss_pred CEEEEEECCCCEEEEEEEEECCCCCEEEEEECC-CCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEEEEEEC
Q ss_conf 079999639909989999964989599999948-9975223468889986788999999995189998807997998744
Q 001444 94 VVAEAMFVNREEIPVYPIYRDPVHDFGFFRYDP-SAIQFLNYDEIPLAPEAACVGLEIRVVGNDSGEKVSILAGTLARLD 172 (1076)
Q Consensus 94 ~~~~v~~~~~~~~~a~vv~~D~~~DlAiLk~~~-~~~~~~~~~~~~l~~~~~~~G~~v~~iG~p~g~~~s~~~G~is~~~ 172 (1076)
..+.+.+.+++.+++++++.|+.+|||+||++. ..++.+.+.. +..+++|++|+++|||.+...+++.|++++..
T Consensus 88 ~~i~V~~~dg~~~~a~vv~~d~~~DlAlLkv~~~~~~~~~~l~~----s~~~~~G~~V~aiG~p~g~~~~vt~G~Vs~~~ 163 (345)
T 3stj_A 88 QKISIQLNDGREFDAKLIGSDDQSDIALLQIQNPSKLTQIAIAD----SDKLRVGDFAVAVGNPFGLGQTATSGIVSALG 163 (345)
T ss_dssp EEEEEECTTSCEEEEEEEEEETTTTEEEEEESSCCSCCCCCBCC----GGGCCTTBEEEEEECGGGCSCEEEEEEEEEEE
T ss_pred CEEEEEECCCCEEEEEEEEECCCCCEEEEEECCCCCCCEEEECC----CCCCCCCCEEEEEECCCCCCCCEEEEEEEEEC
T ss_conf 88999968996999999998699998999975667884476158----45578799999998788878717766995632
Q ss_pred CCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCEECCCCCEEEEEECCCC----CCCCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 79888888886556603699933368999789054288839998203358----99973332779999999999944976
Q 001444 173 RDAPHYKKDGYNDFNTFYMQAASGTKGGSSGSPVIDWQGRAVALNAGSKS----SSASAFFLPLERVVRALRFLQERRDC 248 (1076)
Q Consensus 173 ~~~p~~~~~~~~~~~~~~i~~~a~~~~G~SGgpv~n~~G~vVGi~~~~~~----~~~~~f~lP~~~i~~~l~~l~~~~~~ 248 (1076)
+.. +....+.+ +||+++.+++|+|||||+|.+|+||||++.... ..+++|++|++.+++++++|.+.+
T Consensus 164 ~~~--~~~~~~~~----~iq~da~i~~GnSGGPLvn~~G~vVGI~s~~~~~~~~~~g~gfaIP~~~~~~~~~~l~~~g-- 235 (345)
T 3stj_A 164 RSG--LNLEGLEN----FIQTDASINRGNSGGALLNLNGELIGINTAILAPGGGSVGIGFAIPSNMARTLAQQLIDFG-- 235 (345)
T ss_dssp ECC--SSSSSSCC----EEEECSCCCTTCTTCEEECTTSCEEEEEEEEECTTSSCSSCEEEEEHHHHHHHHHHHHHHS--
T ss_pred CCC--CCCCCCCC----EEEEECCCCCCCCCCCEECCCCEEEEEEECCCCCCCCCCEEEEEEEHHHHHHHHHHHHHCC--
T ss_conf 466--58777367----7999566399867134448898899998410268777510578985289999999987514--
Q ss_pred CCCCCCEECCCCCCCCEEEEECCHHHHHHCCCCHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCC-CCCCCCEEEEECCE
Q ss_conf 54554100147776364999939367777199835798664079999876799977459990014-99999899999999
Q 001444 249 NIHNWEAVSIPRGTLQVTFVHKGFDETRRLGLQSATEQMVRHASPPGETGLLVVDSVVPGGPAHL-RLEPGDVLVRVNGE 327 (1076)
Q Consensus 249 ~~~~~~~~~~~rg~lg~~~~~~~~~~~r~lGl~~~~~~~~~~~~~~~~~G~lvv~~V~~~spA~~-gL~~GD~Il~VnG~ 327 (1076)
.+.|+|||+.++....+.++.||++ ...|++| ..|.++|||++ ||++||+|++|||+
T Consensus 236 --------~v~~~~lGv~~~~~~~~~a~~~gl~-------------~~~G~~V-~~V~~~spA~~aGL~~GDvI~~ing~ 293 (345)
T 3stj_A 236 --------EIKRGLLGIKGTEMSADIAKAFNLD-------------VQRGAFV-SEVLPGSGSAKAGVKAGDIITSLNGK 293 (345)
T ss_dssp --------SCCCEECCEEEEECCHHHHHHTTCS-------------CCSSEEE-EEECTTSHHHHHTCCTTCEECEETTE
T ss_pred --------CCCCCCCCEEEEEECHHHHHHCCCC-------------CCCEEEE-EEECCCCHHHHCCCCCCCEEEEECCE
T ss_conf --------4410002114675028788760788-------------8843799-98334895897699999999998999
Q ss_pred EECCHHHHHHHHHC-CCCCEEEEEEEECCEEEEEEEEECCCCCCCCC
Q ss_conf 70896679998832-89985999999699699999995148888877
Q 001444 328 VITQFLKLETLLDD-GVDKNIELLIERGGISMTVNLVVQDLHSITPD 373 (1076)
Q Consensus 328 ~v~~~~~l~~~l~~-~~g~~v~l~v~R~g~~~~~~i~~~~~~~~~~~ 373 (1076)
++.++.++..++.. .+|++++++|.|+|+.+++++++..++.....
T Consensus 294 ~v~~~~~l~~~l~~~~~g~~v~l~v~R~g~~~~~~v~l~~~~~~~~~ 340 (345)
T 3stj_A 294 PLNSFAELRSRIATTEPGTKVKLGLLRNGKPLEVEVTLDTSTSSLEH 340 (345)
T ss_dssp ECSCHHHHHHHHHTSCTTCEEEEEEEETTEEEEEEEECEEC------
T ss_pred ECCCHHHHHHHHHHCCCCCEEEEEEEECCEEEEEEEEECCCCCCCCC
T ss_conf 98899999999983599988999999999999999998326777764
No 10
>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A* 1sot_A 1soz_A 1vcw_A 2r3y_A
Probab=1.00 E-value=1 Score=345.36 Aligned_cols=300 Identities=17% Similarity=0.288 Sum_probs=252.5
Q ss_pred CCCCHHHHHHHHHCCCEEEEEEEEEEC-CCCCCCCCCEEEEEEEECCCCEEEECCCCCCCCCCEEEEEECCCCEEEEEEE
Q ss_conf 684049999988399609999866412-6989998837999999289829993754369999079999639909989999
Q 001444 33 ATADDWRKALNKVVPAVVVLRTTACRA-FDTEAAGASYATGFVVDKRRGIILTNRHVVKPGPVVAEAMFVNREEIPVYPI 111 (1076)
Q Consensus 33 ~~~~~~~~~~~~v~~svV~I~~~~~~~-~d~~~~~~~~gTGfvV~~~~G~IlT~~Hvv~~~~~~~~v~~~~~~~~~a~vv 111 (1076)
....++.++++++.+|||+|.+..... ++......+.||||+|++ +||||||+||+. +...+.+.+.+++.++++++
T Consensus 6 ~~~~~~~~~~~~~~~sVV~I~~~~~~~~~~~~~~~~~~gsG~iI~~-~G~IlT~aHvv~-~~~~i~V~~~~g~~~~a~v~ 83 (318)
T 1te0_A 6 ETPASYNLAVRRAAPAVVNVYNRGLNTNSHNQLEIRTLGSGVIMDQ-RGYIITNKHVIN-DADQIIVALQDGRVFEALLV 83 (318)
T ss_dssp CCCCCCHHHHHHHGGGEEEEEEEEECSSSSCCEEEEEEEEEEECST-TCEEEEEHHHHT-TCSEEEEECTTSCEEEEEEE
T ss_pred CCCCCHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCEEEEEEEC-CCEEEECHHHCC-CCCEEEEEECCCCEEEEEEE
T ss_conf 5663689999860896899996753677655656685279999908-989998878969-99879999479989989999
Q ss_pred EECCCCCEEEEEECCC-CCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCEEE
Q ss_conf 9649895999999489-975223468889986788999999995189998807997998744798888888865566036
Q 001444 112 YRDPVHDFGFFRYDPS-AIQFLNYDEIPLAPEAACVGLEIRVVGNDSGEKVSILAGTLARLDRDAPHYKKDGYNDFNTFY 190 (1076)
Q Consensus 112 ~~D~~~DlAiLk~~~~-~~~~~~~~~~~l~~~~~~~G~~v~~iG~p~g~~~s~~~G~is~~~~~~p~~~~~~~~~~~~~~ 190 (1076)
++|+.+|||+|+++.. .++++.+.. +..+++|++|+++|||.+...++..|+++...+... ....+. .+
T Consensus 84 ~~d~~~DlAllk~~~~~~~~~~~l~~----~~~~~~G~~v~~~G~p~g~~~~~~~g~vs~~~~~~~--~~~~~~----~~ 153 (318)
T 1te0_A 84 GSDSLTDLAVLIIKATGGLPTIPINA----RRVPHIGDVVLAIGNPYNLGQTITQGIISATGRIGL--NPTGRQ----NF 153 (318)
T ss_dssp EEETTTTEEEEECCCSSCCCCCCCCT----TCCCCTTCEEEEECCCSSSSCCEEEEEEEECCCCCC--CTTCSC----CS
T ss_pred EECCCCEEEEEEEECCCCCCEEEEEC----CCCCCCCCEEEEEECCCCCCCCEEEEEEECCCCCCC--CCCCCC----CE
T ss_conf 70789628999992788986577407----567888999999991898787087369831445543--788867----88
Q ss_pred EEEEECCCCCCCCCCEECCCCCEEEEEECCCC-------CCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEECCCCCCC
Q ss_conf 99933368999789054288839998203358-------99973332779999999999944976545541001477763
Q 001444 191 MQAASGTKGGSSGSPVIDWQGRAVALNAGSKS-------SSASAFFLPLERVVRALRFLQERRDCNIHNWEAVSIPRGTL 263 (1076)
Q Consensus 191 i~~~a~~~~G~SGgpv~n~~G~vVGi~~~~~~-------~~~~~f~lP~~~i~~~l~~l~~~~~~~~~~~~~~~~~rg~l 263 (1076)
|++++.+.+|+|||||+|.+|+||||++.... ..+.+|++|++.+++++++|.+++ .+.|++|
T Consensus 154 i~~d~~~~~G~SGGPl~~~~G~vvGI~s~~~~~~~~~~~~~~~~~aip~~~i~~~l~~l~~~g----------~~~~~~l 223 (318)
T 1te0_A 154 LQTDASINHGNSGGALVNSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRDG----------RVIRGYI 223 (318)
T ss_dssp EEESSCCCTTTTTSEEECTTCCEEEEEECCSSSSSSCCSCCSCEEEEEHHHHHHHHHHHHHHS----------SCCCEEC
T ss_pred EEECCCCCCCCCCCCEECCCCEEEEEEEEEECCCCCCCCCCCEEEECCHHHHHHHHHHHHHCC----------CCCCCCC
T ss_conf 999987789987372588998299998553036776666442488536999999999999749----------7545642
Q ss_pred CEEEEECCHHHHHHCCCCHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCC-CCCCCCEEEEECCEEECCHHHHHHHHHC-
Q ss_conf 64999939367777199835798664079999876799977459990014-9999989999999970896679998832-
Q 001444 264 QVTFVHKGFDETRRLGLQSATEQMVRHASPPGETGLLVVDSVVPGGPAHL-RLEPGDVLVRVNGEVITQFLKLETLLDD- 341 (1076)
Q Consensus 264 g~~~~~~~~~~~r~lGl~~~~~~~~~~~~~~~~~G~lvv~~V~~~spA~~-gL~~GD~Il~VnG~~v~~~~~l~~~l~~- 341 (1076)
|+.++......++.||++ ...|++| ..|.++|||++ ||++||+|++|||+++.++.++..++..
T Consensus 224 Gi~~~~~~~~~~~~~g~~-------------~~~g~~V-~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~l~~~l~~~ 289 (318)
T 1te0_A 224 GIGGREIAPLHAQGGGID-------------QLQGIVV-NEVSPDGPAANAGIQVNDLIISVDNKPAISALETMDQVAEI 289 (318)
T ss_dssp CEEEEECSCCCSSSSCSS-------------SCCCEEE-EEECTTSTTTTTCCCTTCCEEEETTEECCCHHHHHHHHHTS
T ss_pred EEEEEECCHHHHHHCCCC-------------CCCCEEE-EEECCCCHHHHCCCCCCCEEEEECCEECCCHHHHHHHHHHC
T ss_conf 157653456678752678-------------8985799-99589994787899999999998999968999999999734
Q ss_pred CCCCEEEEEEEECCEEEEEEEEECCCC
Q ss_conf 899859999996996999999951488
Q 001444 342 GVDKNIELLIERGGISMTVNLVVQDLH 368 (1076)
Q Consensus 342 ~~g~~v~l~v~R~g~~~~~~i~~~~~~ 368 (1076)
.+|+.++++|+|+|+.+++++++...+
T Consensus 290 ~~g~~v~l~v~R~g~~~~~~v~~~~~~ 316 (318)
T 1te0_A 290 RPGSVIPVVVMRDDKQLTLQVTIQEYP 316 (318)
T ss_dssp CTTCEEEEEEESSSCEEEEEEECEECC
T ss_pred CCCCEEEEEEEECCEEEEEEEEECCCC
T ss_conf 898879999999999999999972579
Done!