BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001445
(1076 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|225452572|ref|XP_002275511.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
chloroplastic-like [Vitis vinifera]
Length = 1044
Score = 1138 bits (2944), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 642/1100 (58%), Positives = 765/1100 (69%), Gaps = 101/1100 (9%)
Query: 2 LLSHYYHNPILLPKTLTNSSSPF------FTFHK------TLSLQNPEKPSIFVISCSKT 49
L+ Y NP+LL TL SPF FT T NP KPS F++ S
Sbjct: 16 LILFYSPNPMLL--TLCRHHSPFPSPTPTFTSSPPSISPSTFKTLNP-KPSKFILRAS-- 70
Query: 50 QNPLTQSETRVQNDTTSAIQRIADKLRSLGIVEQTTSKDDTLNPEPETRATDNAGEIFIP 109
NP Q+ + +AIQRIA+KLRSLG V+ S+ + +P A +AGEIF+P
Sbjct: 71 -NPDAQTLPK------TAIQRIAEKLRSLGYVDGDESRKVLSSDKP---ANGSAGEIFVP 120
Query: 110 LPHRIPKYRVGHTIDDSWSTPENPVPVPGTGAAIVRYNQLNKEVGRQKWLAKNSKMNEKE 169
LP+++PK+RVGHTID SWS PENPVP PGTG I R+++L KEV R+K L + +++
Sbjct: 121 LPNQLPKHRVGHTIDQSWSLPENPVPEPGTGGVITRFHELRKEVKREKKLVR-----KED 175
Query: 170 KEVPTLAELKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCE 229
+ PTLAEL L +ELRRL+ +GI +RKKLK+GKAGITEGIVNGIHERWR AEVVKI CE
Sbjct: 176 ERAPTLAELTLPEEELRRLKGIGIQIRKKLKVGKAGITEGIVNGIHERWRRAEVVKIRCE 235
Query: 230 DLCRLNMKRTHDSLERKTGGLVVWRSGSKIILYRGADYKYPYFLADESSTDGASSDDLPN 289
D+C+LNMKRTHD LERKTGGLV+WRSGS IILYRGA+YKYPYFL+D + + +S D +
Sbjct: 236 DICKLNMKRTHDILERKTGGLVIWRSGSYIILYRGANYKYPYFLSDNNLPNDSSHDASSD 295
Query: 290 QLVDDEGLDETKTHSSGADSAKPSGQSPTNKKVQQTLIHSVGSPDKLRYQLPGEAELVEE 349
+++E D + SSG K +G P NK +LI VG P ++R+QLPGEA+L EE
Sbjct: 296 SQMNNEEHDGKEVCSSGKGDVKSAGPMPANKIAPLSLIQGVGYPTRVRFQLPGEAQLEEE 355
Query: 350 ADRLLDGLGPRFTDWWGYDPQPVDADLLPATVPGYRRPFRLLPYGVQPKLTNDEMTTLRR 409
ADRLLDGLGPRFTDWWGYDP P+DADLLPA VPGYRRPFRLLPYG++PKLTNDEMT LRR
Sbjct: 356 ADRLLDGLGPRFTDWWGYDPLPIDADLLPAVVPGYRRPFRLLPYGLKPKLTNDEMTVLRR 415
Query: 410 LGRPLPCHFALGRNRNLQGLAAAIVKLWEKCEIAKIAVKRGAQNTNSEMMAQELKRLTGG 469
LGRPLPCHFALGRNR LQGLAA+++KLWEKCEIAKIAVKRG QNTNSEMMA+ELK LTGG
Sbjct: 416 LGRPLPCHFALGRNRKLQGLAASMIKLWEKCEIAKIAVKRGVQNTNSEMMAEELKNLTGG 475
Query: 470 TLLSRDREFIVFYRGKDFLPPAASSAIEERRKHEFSTSND---------SKEEPELGNRH 520
TLLSRDREFIVFYRGKDFLPPA SSAIE RRK+ + EE ELG
Sbjct: 476 TLLSRDREFIVFYRGKDFLPPAVSSAIEARRKYGIHRGKQKIDHHRLAINAEESELGT-S 534
Query: 521 DNSGDNTQDEFGCTNDQKSTMHSEQKERRSAEVAIRRTNIRLSRVLEKKAEAEKLLAELE 580
+++ D D T+DQK+ S+++ RSAE + RTNI+LS LEKK AEKLLAELE
Sbjct: 535 EHASDKDCD---GTDDQKTNSLSKRRMLRSAEAVVERTNIKLSMALEKKERAEKLLAELE 591
Query: 581 EER-PEQYEVDKEGITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVENMHLHWKHRELVK 639
E + P+Q E+DKEGITEEERYMLRKVGLRMK FLL+GRRG+FDGTVENMHLHWK+RELVK
Sbjct: 592 EAQIPQQPEIDKEGITEEERYMLRKVGLRMKPFLLLGRRGIFDGTVENMHLHWKYRELVK 651
Query: 640 IISKQRKIEAALQEARTLEVESGGILVAVERVNKGYAIILYRGKNYERPACLRPKTLLTK 699
IIS R IE ARTLE ESGGILVAVERV+KGYAII+YRGKNY+RPA LRP+TLL K
Sbjct: 652 IISNGRSIEDIHGVARTLEAESGGILVAVERVSKGYAIIMYRGKNYKRPASLRPQTLLNK 711
Query: 700 REAMKRSLEAQRRQSLKLHVLELTRNIEKLKLQLV---KDKEANSLETIDESILPLVKEE 756
REA+KRSLEAQRR+SLKLHVL LTRNI++LK QLV KDKE NS + +D+S L L +E
Sbjct: 712 REALKRSLEAQRRESLKLHVLRLTRNIDELKHQLVSRIKDKETNSKQLVDKSRLHLARER 771
Query: 757 IGDMQPAECMRSDTSHEVNVQARGECGADLTSTESNDTGDATIDGPPAIQQDKQTESLTH 816
GAD+ S+D D++ D DK+ + +
Sbjct: 772 Y-------------------------GADVILIHSSDGMDSSRDSLQTSHNDKRIDFPSM 806
Query: 817 NGISINEIESKSSLKSVSKESQLNMIADFFAEGVASGTSSCPDNSMQEVMEYNTIVDAEQ 876
+E + S +SV KE + N++ D EG T+ D Q IV+ E
Sbjct: 807 CDSDTDEANPEPSSESVLKEIETNVLTDMNEEGEC--TTCSEDLVSQGETSCYAIVNHE- 863
Query: 877 CSSDNEPRESSIESAKSRSSENEPIEQSFELAKGRSGLSTPIGTGNVWNENNSRAIQLSN 936
E ESS++S+K +E +P Q P+ T + NE RA LSN
Sbjct: 864 -----ETMESSVKSSK---NEFKPPVQR------------PVDTRS--NEMPFRAAPLSN 901
Query: 937 RDRLLLRKQALRMKKRPVLAVGRSNIVTGVAKAIKAHFEKYPLAIVNVKGRAKGTSVQEV 996
R+RLLLRKQALRMKKRPV+AVGRSNIVTGVAK IKAHF+K+PLAIVNVKGRAKGTSVQEV
Sbjct: 902 RERLLLRKQALRMKKRPVIAVGRSNIVTGVAKTIKAHFQKHPLAIVNVKGRAKGTSVQEV 961
Query: 997 VAKLEEATGAVLVSQEPSKVILYRGWGAEDESSPRGRQN--SRAKPSIVRDVRPWPAVSR 1054
+ KLE+ATGAVLVSQEPSKVILYRGWGA +E+ R N K S R+ P P VS
Sbjct: 962 IFKLEQATGAVLVSQEPSKVILYRGWGAREENGRSYRMNRSDARKTSAGREGGPRPTVSP 1021
Query: 1055 ELLAAIKLECGLQGQQEQEA 1074
EL AAI+LECGL+ Q++ A
Sbjct: 1022 ELRAAIRLECGLKSNQDKGA 1041
>gi|255552728|ref|XP_002517407.1| conserved hypothetical protein [Ricinus communis]
gi|223543418|gb|EEF44949.1| conserved hypothetical protein [Ricinus communis]
Length = 1009
Score = 1125 bits (2911), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 619/1077 (57%), Positives = 757/1077 (70%), Gaps = 118/1077 (10%)
Query: 22 SPFFTFHKTLSLQN---PEKPSIFVISCSKTQNPLTQSETRVQNDTTSAIQRIADKLRSL 78
SP F F +TL LQN P K SI I CS ++ +SAIQRIADKLRSL
Sbjct: 19 SPVFPFPQTLILQNRKVPSKSSI-TIHCSNSKTV-----------PSSAIQRIADKLRSL 66
Query: 79 GIVEQTTSKDDTLNPEPETRATDNA----GEIFIPLPHRIPKYRVGHTIDDSWSTPENPV 134
G E NPEP TR + GEIFIPLP+ + KYRVGHT+D SWSTPENPV
Sbjct: 67 GFAEH--------NPEPHTRNSAETKQREGEIFIPLPNELSKYRVGHTLDPSWSTPENPV 118
Query: 135 PVPGTGAAIVRYNQLNKEVGRQKWLAKNSKMNEKEKEVPTLAELKLSGKELRRLRTLGIG 194
P PG+G AI+RY++L K+V +++ + ++E +VPTLAEL LS +ELRRLR +GI
Sbjct: 119 PRPGSGNAILRYHELRKQVKKER------EDKKREAKVPTLAELSLSEEELRRLRRIGIA 172
Query: 195 LRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRTHDSLERKTGGLVVWR 254
++KLK+GKAGITEGIVNGIHERWR +EVVKIVCEDLCR+NMKRTHD LERKTGGLVVWR
Sbjct: 173 EKRKLKVGKAGITEGIVNGIHERWRRSEVVKIVCEDLCRMNMKRTHDLLERKTGGLVVWR 232
Query: 255 SGSKIILYRGADYKYPYFLADESSTDGASSDDLPNQLVDDEGLDETKTHSSGADSAKPSG 314
+GSKI+LYRG +Y YPYFL+D ++ + S D + + ++ D+ K+ SS D K SG
Sbjct: 233 AGSKIVLYRGVNYIYPYFLSDNTTENDTSIDAVQDTHKHNDS-DKIKSCSSSVDGVKFSG 291
Query: 315 QSPTNKKVQQTLIHSVGSPDKLRYQLPGEAELVEEADRLLDGLGPRFTDWWGYDPQPVDA 374
SPTNK V+ LI VG P+++R+QLPGEA+L EE D LL+GLGPRF+DWWGY+P PVDA
Sbjct: 292 PSPTNKAVRPALIQGVGLPNRVRFQLPGEAQLAEEVDSLLEGLGPRFSDWWGYEPLPVDA 351
Query: 375 DLLPATVPGYRRPFRLLPYGVQPKLTNDEMTTLRRLGRPLPCHFALGRNRNLQGLAAAIV 434
DLLPA VPGY++PFRLLPYG++P LTNDEMTTL+RLGRPLPCHF LGRNR LQGLAA+I+
Sbjct: 352 DLLPAIVPGYQKPFRLLPYGIKPILTNDEMTTLKRLGRPLPCHFVLGRNRKLQGLAASII 411
Query: 435 KLWEKCEIAKIAVKRGAQNTNSEMMAQELKRLTGGTLLSRDREFIVFYRGKDFLPPAASS 494
KLWEKCEIAKIAVKRG QNTNSEMMA+ELKRLTGGTLLSRDREFIV YRGKDFLP A SS
Sbjct: 412 KLWEKCEIAKIAVKRGVQNTNSEMMAEELKRLTGGTLLSRDREFIVLYRGKDFLPSAVSS 471
Query: 495 AIEERRKHEFSTSND----------SKEEPELGNRHDNSGDNTQDEFGCTNDQKSTMHSE 544
AI+ERR H F+ + + +KE ++ + NSG +QDEF N+Q + S+
Sbjct: 472 AIKERRNHVFNVAKERTDNSTSAETAKEAEDVEDGTSNSG--SQDEFHGNNEQSYDL-SK 528
Query: 545 QKERRSAEVAIRRTNIRLSRVLEKKAEAEKLLAELE-EERPEQYEVDKEGITEEERYMLR 603
Q++ + AI+RT+IRLS LEKKA+A KLLAE+E E +Q E+DKEGIT+EERYMLR
Sbjct: 529 QRKLSFTKEAIKRTSIRLSMALEKKAKAVKLLAEIENSEMSQQPEIDKEGITDEERYMLR 588
Query: 604 KVGLRMKAFLLMGRRGVFDGTVENMHLHWKHRELVKIISKQRKIEAALQEARTLEVESGG 663
KVGL+MK FLL+GRRGVFDGT+ENMHLHWK+RELVKII K+R + A + A++LE ESGG
Sbjct: 589 KVGLKMKPFLLIGRRGVFDGTIENMHLHWKYRELVKIICKERSLNAVHEVAQSLEAESGG 648
Query: 664 ILVAVERVNKGYAIILYRGKNYERPACLRPKTLLTKREAMKRSLEAQRRQSLKLHVLELT 723
ILVAVERV+KGYAI++YRGKNY+RPA LRP TLL+KREAMKRSLEAQRR+SLKLHVL LT
Sbjct: 649 ILVAVERVSKGYAIVVYRGKNYQRPALLRPPTLLSKREAMKRSLEAQRRESLKLHVLRLT 708
Query: 724 RNIEKLKLQLVKDKEANSLETIDESILPLVKEEIGDMQPAECMRSDTSH-EVNVQARGEC 782
RNI LKL+L+ + + + L KE SH VN+
Sbjct: 709 RNINDLKLKLLFNGNGIGRSEFESLSISLSKE---------------SHASVNI------ 747
Query: 783 GADLTSTESNDTGDATIDGPPAIQQDKQTE----SLTHNGISINEIESKSSLKSVSKESQ 838
IQ D+Q SL ++GI I + E +SS +S+SKE+
Sbjct: 748 ----------------------IQPDEQASQINPSLLYDGIRIGKNEPESSSESLSKETH 785
Query: 839 LNMIADFFAEGVASGTSSCPDNSMQEVMEYNTIVDAEQCSSDNEPRESSIESAKSRSSEN 898
++ G A ++S P+ SM E V AE C +N+ S++ES +
Sbjct: 786 ASLFTAI--NGGAVDSTSFPNTSMSEERGSYPCVSAENCVHENKIMGSTVESTTT----- 838
Query: 899 EPIEQSFELAKGRSGLSTPIGTGNVWNENNSRAIQLSNRDRLLLRKQALRMKKRPVLAVG 958
+E+S + + N NE S I LSNRDRL+LRKQAL+MK RPVLAVG
Sbjct: 839 -VLEESVSI------------SANEDNEMQSSTICLSNRDRLMLRKQALKMKNRPVLAVG 885
Query: 959 RSNIVTGVAKAIKAHFEKYPLAIVNVKGRAKGTSVQEVVAKLEEATGAVLVSQEPSKVIL 1018
RSNIVTGVAK IKAHF+KYPLAIVNVKGRAKGTSVQEVV +LE+ATG VLVSQEPSKVIL
Sbjct: 886 RSNIVTGVAKTIKAHFKKYPLAIVNVKGRAKGTSVQEVVFQLEQATGGVLVSQEPSKVIL 945
Query: 1019 YRGWGAEDESSPRGRQNSR--AKPSIVRDVRPWPAVSRELLAAIKLECGLQGQQEQE 1073
YRGWGA DE RG++N+ K S+V++ +S EL+AAI+LECGLQ +QEQ+
Sbjct: 946 YRGWGAFDEPGHRGKKNAHDSGKTSVVKEESSRLGMSPELMAAIRLECGLQNKQEQK 1002
>gi|296087726|emb|CBI34982.3| unnamed protein product [Vitis vinifera]
Length = 1028
Score = 1114 bits (2882), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 624/1059 (58%), Positives = 741/1059 (69%), Gaps = 99/1059 (9%)
Query: 2 LLSHYYHNPILLPKTLTNSSSPF------FTFHK------TLSLQNPEKPSIFVISCSKT 49
L+ Y NP+LL TL SPF FT T NP KPS F++ S
Sbjct: 16 LILFYSPNPMLL--TLCRHHSPFPSPTPTFTSSPPSISPSTFKTLNP-KPSKFILRAS-- 70
Query: 50 QNPLTQSETRVQNDTTSAIQRIADKLRSLGIVEQTTSKDDTLNPEPETRATDNAGEIFIP 109
NP Q+ + +AIQRIA+KLRSLG V+ S+ + +P A +AGEIF+P
Sbjct: 71 -NPDAQTLPK------TAIQRIAEKLRSLGYVDGDESRKVLSSDKP---ANGSAGEIFVP 120
Query: 110 LPHRIPKYRVGHTIDDSWSTPENPVPVPGTGAAIVRYNQLNKEVGRQKWLAKNSKMNEKE 169
LP+++PK+RVGHTID SWS PENPVP PGTG I R+++L KEV R+K L + +++
Sbjct: 121 LPNQLPKHRVGHTIDQSWSLPENPVPEPGTGGVITRFHELRKEVKREKKLVR-----KED 175
Query: 170 KEVPTLAELKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCE 229
+ PTLAEL L +ELRRL+ +GI +RKKLK+GKAGITEGIVNGIHERWR AEVVKI CE
Sbjct: 176 ERAPTLAELTLPEEELRRLKGIGIQIRKKLKVGKAGITEGIVNGIHERWRRAEVVKIRCE 235
Query: 230 DLCRLNMKRTHDSLERKTGGLVVWRSGSKIILYRGADYKYPYFLADESSTDGASSDDLPN 289
D+C+LNMKRTHD LERKTGGLV+WRSGS IILYRGA+YKYPYFL+D + + +S D +
Sbjct: 236 DICKLNMKRTHDILERKTGGLVIWRSGSYIILYRGANYKYPYFLSDNNLPNDSSHDASSD 295
Query: 290 QLVDDEGLDETKTHSSGADSAKPSGQSPTNKKVQQTLIHSVGSPDKLRYQLPGEAELVEE 349
+++E D + SSG K +G P NK +LI VG P ++R+QLPGEA+L EE
Sbjct: 296 SQMNNEEHDGKEVCSSGKGDVKSAGPMPANKIAPLSLIQGVGYPTRVRFQLPGEAQLEEE 355
Query: 350 ADRLLDGLGPRFTDWWGYDPQPVDADLLPATVPGYRRPFRLLPYGVQPKLTNDEMTTLRR 409
ADRLLDGLGPRFTDWWGYDP P+DADLLPA VPGYRRPFRLLPYG++PKLTNDEMT LRR
Sbjct: 356 ADRLLDGLGPRFTDWWGYDPLPIDADLLPAVVPGYRRPFRLLPYGLKPKLTNDEMTVLRR 415
Query: 410 LGRPLPCHFALGRNRNLQGLAAAIVKLWEKCEIAKIAVKRGAQNTNSEMMAQELKRLTGG 469
LGRPLPCHFALGRNR LQGLAA+++KLWEKCEIAKIAVKRG QNTNSEMMA+ELK LTGG
Sbjct: 416 LGRPLPCHFALGRNRKLQGLAASMIKLWEKCEIAKIAVKRGVQNTNSEMMAEELKNLTGG 475
Query: 470 TLLSRDREFIVFYRGKDFLPPAASSAIEERRKHEFSTSND---------SKEEPELGNRH 520
TLLSRDREFIVFYRGKDFLPPA SSAIE RRK+ + EE ELG
Sbjct: 476 TLLSRDREFIVFYRGKDFLPPAVSSAIEARRKYGIHRGKQKIDHHRLAINAEESELGT-S 534
Query: 521 DNSGDNTQDEFGCTNDQKSTMHSEQKERRSAEVAIRRTNIRLSRVLEKKAEAEKLLAELE 580
+++ D D T+DQK+ S+++ RSAE + RTNI+LS LEKK AEKLLAELE
Sbjct: 535 EHASDKDCD---GTDDQKTNSLSKRRMLRSAEAVVERTNIKLSMALEKKERAEKLLAELE 591
Query: 581 EER-PEQYEVDKEGITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVENMHLHWKHRELVK 639
E + P+Q E+DKEGITEEERYMLRKVGLRMK FLL+GRRG+FDGTVENMHLHWK+RELVK
Sbjct: 592 EAQIPQQPEIDKEGITEEERYMLRKVGLRMKPFLLLGRRGIFDGTVENMHLHWKYRELVK 651
Query: 640 IISKQRKIEAALQEARTLEVESGGILVAVERVNKGYAIILYRGKNYERPACLRPKTLLTK 699
IIS R IE ARTLE ESGGILVAVERV+KGYAII+YRGKNY+RPA LRP+TLL K
Sbjct: 652 IISNGRSIEDIHGVARTLEAESGGILVAVERVSKGYAIIMYRGKNYKRPASLRPQTLLNK 711
Query: 700 REAMKRSLEAQRRQSLKLHVLELTRNIEKLKLQLV---KDKEANSLETIDESILPLVKEE 756
REA+KRSLEAQRR+SLKLHVL LTRNI++LK QLV KDKE NS + +D+S L L
Sbjct: 712 REALKRSLEAQRRESLKLHVLRLTRNIDELKHQLVSRIKDKETNSKQLVDKSRLHL---- 767
Query: 757 IGDMQPAECMRSDTSHEVNVQARGECGADLTSTESNDTGDATIDGPPAIQQDKQTESLTH 816
AR GAD+ S+D D++ D DK+ + +
Sbjct: 768 ---------------------ARERYGADVILIHSSDGMDSSRDSLQTSHNDKRIDFPSM 806
Query: 817 NGISINEIESKSSLKSVSKESQLNMIADFFAEGVASGTSSCPDNSMQEVMEYNTIVDAEQ 876
+E + S +SV KE + N++ D EG T+ D Q IV+ E
Sbjct: 807 CDSDTDEANPEPSSESVLKEIETNVLTDMNEEG--ECTTCSEDLVSQGETSCYAIVNHE- 863
Query: 877 CSSDNEPRESSIESAKSRSSENEPIEQSFELAKGRSGLSTPIGTGNVWNENNSRAIQLSN 936
E ESS++S+K +E +P Q P+ T + NE RA LSN
Sbjct: 864 -----ETMESSVKSSK---NEFKPPVQR------------PVDTRS--NEMPFRAAPLSN 901
Query: 937 RDRLLLRKQALRMKKRPVLAVGRSNIVTGVAKAIKAHFEKYPLAIVNVKGRAKGTSVQEV 996
R+RLLLRKQALRMKKRPV+AVGRSNIVTGVAK IKAHF+K+PLAIVNVKGRAKGTSVQEV
Sbjct: 902 RERLLLRKQALRMKKRPVIAVGRSNIVTGVAKTIKAHFQKHPLAIVNVKGRAKGTSVQEV 961
Query: 997 VAKLEEATGAVLVSQEPSKVILYRGWGAEDESSPRGRQN 1035
+ KLE+ATGAVLVSQEPSKVILYRGWGA +E+ R N
Sbjct: 962 IFKLEQATGAVLVSQEPSKVILYRGWGAREENGRSYRMN 1000
>gi|30678323|ref|NP_186786.2| CRM family member 2 [Arabidopsis thaliana]
gi|22531018|gb|AAM97013.1| unknown protein [Arabidopsis thaliana]
gi|37202002|gb|AAQ89616.1| At3g01370 [Arabidopsis thaliana]
gi|332640136|gb|AEE73657.1| CRM family member 2 [Arabidopsis thaliana]
Length = 1011
Score = 1024 bits (2648), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 581/1094 (53%), Positives = 724/1094 (66%), Gaps = 111/1094 (10%)
Query: 1 MLLSHYYHNPILLPKTLTNSSSPFFTFHKTLSLQNPEKPSIFVISCSKTQNPLTQSETRV 60
MLL ++ P++L KT + P F TL + + I CS T +
Sbjct: 1 MLLPLFHQQPLILAKTFPDRIFPPFLVPNTLVSRRNVSRANSGIFCSSASGRKTLPQ--- 57
Query: 61 QNDTTSAIQRIADKLRSLGIVEQTTSKDDTLNPEPETRAT------DNAGEIFIPLPHRI 114
SAIQRIA+KLRSLG VE+ K D+ P R T ++ GEIF+PLP ++
Sbjct: 58 -----SAIQRIAEKLRSLGFVEE---KHDS----PTRRITGEESGKNSPGEIFVPLPKQL 105
Query: 115 PKYRVGHTIDDSWSTPENPVPVPGTGAAIVRYNQLNKEVGRQKWLAKNSKMNEKEKEVPT 174
P +RVGHTID SWSTP PVP PG+G AI RY++L ++ W + +KE++VP+
Sbjct: 106 PIHRVGHTIDTSWSTPSYPVPKPGSGTAISRYHEL-----KRVWKKETEMERKKEEKVPS 160
Query: 175 LAELKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRL 234
LAEL L ELRRLRT+GI L KKLKIGKAGITEGIVNGIHERWR EVVKI CED+ R+
Sbjct: 161 LAELTLPPAELRRLRTVGIRLTKKLKIGKAGITEGIVNGIHERWRTTEVVKIFCEDISRM 220
Query: 235 NMKRTHDSLERKTGGLVVWRSGSKIILYRGADYKYPYFLAD----ESSTDGASSDDLPNQ 290
NMKRTHD LE KTGGLV+WRSGSKI+LYRG +Y+YPYF++D + GASS D
Sbjct: 221 NMKRTHDVLETKTGGLVIWRSGSKILLYRGVNYQYPYFVSDRDLAHEAASGASSMD---- 276
Query: 291 LVDDEGLDETKTHSSGADSAKPSGQSPTNKKVQQTLIHSVGSPDKLRYQLPGEAELVEEA 350
+G+ +++ S A+S+ PS TNK V+ L VGSPDK+R+QLPGE +LVEEA
Sbjct: 277 ----QGVVDSREKQSIAESSAPS---ITNKMVKPMLTQGVGSPDKVRFQLPGEVQLVEEA 329
Query: 351 DRLLDGLGPRFTDWWGYDPQPVDADLLPATVPGYRRPFRLLPYGVQPKLTNDEMTTLRRL 410
DRLL+GLGPRFTDWW YDP PVD DLLPA VP YRRPFRLLPYGV PKLT+DEMTT+RRL
Sbjct: 330 DRLLEGLGPRFTDWWAYDPLPVDGDLLPAVVPDYRRPFRLLPYGVSPKLTDDEMTTIRRL 389
Query: 411 GRPLPCHFALGRNRNLQGLAAAIVKLWEKCEIAKIAVKRGAQNTNSEMMAQELKRLTGGT 470
GRPLPCHFALGRNRNLQGLA AIVKLWEKCE+AKIAVKRG QNTNSE+MA+ELK LTGGT
Sbjct: 390 GRPLPCHFALGRNRNLQGLAVAIVKLWEKCELAKIAVKRGVQNTNSELMAEELKWLTGGT 449
Query: 471 LLSRDREFIVFYRGKDFLPPAASSAIEERRKHEFSTSNDSKEEPELG-NRHDNSGDNTQD 529
L+SRD++FIV YRGKDFLP A SSAIEERR+ N S +L N + ++
Sbjct: 450 LISRDKDFIVLYRGKDFLPSAVSSAIEERRRQTMIMENSSVHGNKLTENEEEIKPRAVKE 509
Query: 530 EFGC-TNDQKSTMHSEQ---KERRSAEVAIRRTNIRLSRVLEKKAEAEKLLAELEE-ERP 584
+ DQK + + Q ++R S E + +T+++LS LEKKA AEK+LA+LE E P
Sbjct: 510 DIELEAKDQKDHIQTHQMKSRQRNSPEAILEKTSMKLSMALEKKANAEKVLADLENRESP 569
Query: 585 EQYEVDKEGITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVENMHLHWKHRELVKIISKQ 644
+ ++DKEGIT +E+YMLRK+GL+MK FLL+GRRGVFDGT+ENMHLHWK+RELVKII +
Sbjct: 570 QLSDIDKEGITNDEKYMLRKIGLKMKPFLLLGRRGVFDGTIENMHLHWKYRELVKIICNE 629
Query: 645 RKIEAALQEARTLEVESGGILVAVERVNKGYAIILYRGKNYERPACLRPKTLLTKREAMK 704
IEAA + A LE ESGGILVAVE V+KGYAII+YRGKNYERP CLRP+TLL+KREA+K
Sbjct: 630 YSIEAAHKVAEILEAESGGILVAVEMVSKGYAIIVYRGKNYERPQCLRPQTLLSKREALK 689
Query: 705 RSLEAQRRQSLKLHVLELTRNIEKLKLQLVKDKEANSLETIDESILPLVKEEIGDM---- 760
RS+EAQRR+SLKLHVL+L+ NIE+L QLV+D N + ES +V+EE +
Sbjct: 690 RSVEAQRRKSLKLHVLKLSNNIEELNRQLVEDSATNETWSDGESSNMMVEEETENQHTEP 749
Query: 761 -QPAECMRSDTSHEVNVQARGECGADLTSTESNDTGDATIDGPPAIQQDKQTESLTHNGI 819
+ E + S +++V + GE + D + +D LT +
Sbjct: 750 EKAREKIELGYSSDLSVPSSGEENWE-------DDSEGEVD------------PLTTSSQ 790
Query: 820 SINEIESKSSLKSVSKESQLNMIADF--FAEGVASGTSSCPDNSMQEVMEYNTIVDAE-Q 876
E ES+S+ + + L+ A+ FAE ++ SS D S+ +N+ ++A +
Sbjct: 791 EYQEDESESASSQRHEGNSLDSTANLSVFAETGSANASSFHDRSLP----HNSFLNANRK 846
Query: 877 CSSDNEPRESSIESAKSRSSENEPIEQSFELAKGRSGLSTPIGTGNVWNENNSRAIQLSN 936
+ S I + + R SEN+ GL T LSN
Sbjct: 847 LPGSSTGSGSQISALRERKSEND-------------GLVT----------------DLSN 877
Query: 937 RDRLLLRKQALRMKKRPVLAVGRSNIVTGVAKAIKAHFEKYPLAIVNVKGRAKGTSVQEV 996
R+RL+LRKQAL+MKKRP AVGRSN+VTG+A+ +K HF+K PLAIVNVKGRA GTSVQEV
Sbjct: 878 RERLILRKQALKMKKRPPFAVGRSNVVTGLARTLKMHFQKNPLAIVNVKGRANGTSVQEV 937
Query: 997 VAKLEEATGAVLVSQEPSKVILYRGWGAEDESSPRGRQN----SRAKPSIVRDVRPWPAV 1052
+AKL+E TGA+LVSQEPSKVILYRGWGAE+E N S PS V P V
Sbjct: 938 IAKLKEETGALLVSQEPSKVILYRGWGAEEEMKSFYPNNNVKSSINLPSTRSFVDDPPHV 997
Query: 1053 SRELLAAIKLECGL 1066
S L+ AI+LECGL
Sbjct: 998 SPALIEAIRLECGL 1011
>gi|6692258|gb|AAF24608.1|AC010870_1 unknown protein [Arabidopsis thaliana]
Length = 1020
Score = 1017 bits (2629), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 581/1103 (52%), Positives = 724/1103 (65%), Gaps = 120/1103 (10%)
Query: 1 MLLSHYYHNPILLPKTLTNSSSPFFTFHKTLSLQNPEKPSIFVISCSKTQNPLTQSETRV 60
MLL ++ P++L KT + P F TL + + I CS T +
Sbjct: 1 MLLPLFHQQPLILAKTFPDRIFPPFLVPNTLVSRRNVSRANSGIFCSSASGRKTLPQ--- 57
Query: 61 QNDTTSAIQRIADKLRSLGIVEQTTSKDDTLNPEPETRAT------DNAGEIFIPLPHRI 114
SAIQRIA+KLRSLG VE+ K D+ P R T ++ GEIF+PLP ++
Sbjct: 58 -----SAIQRIAEKLRSLGFVEE---KHDS----PTRRITGEESGKNSPGEIFVPLPKQL 105
Query: 115 PKYRVGHTIDDSWSTPENPVPVPGTGAAIVRYNQLNKEVGRQKWLAKNSKMNEKEKEVPT 174
P +RVGHTID SWSTP PVP PG+G AI RY++L ++ W + +KE++VP+
Sbjct: 106 PIHRVGHTIDTSWSTPSYPVPKPGSGTAISRYHEL-----KRVWKKETEMERKKEEKVPS 160
Query: 175 LAELKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRL 234
LAEL L ELRRLRT+GI L KKLKIGKAGITEGIVNGIHERWR EVVKI CED+ R+
Sbjct: 161 LAELTLPPAELRRLRTVGIRLTKKLKIGKAGITEGIVNGIHERWRTTEVVKIFCEDISRM 220
Query: 235 NMKRTHDSLERKTGGLVVWRSGSKIILYRGADYKYPYFLAD----ESSTDGASSDDLPNQ 290
NMKRTHD LE KTGGLV+WRSGSKI+LYRG +Y+YPYF++D + GASS D
Sbjct: 221 NMKRTHDVLETKTGGLVIWRSGSKILLYRGVNYQYPYFVSDRDLAHEAASGASSMD---- 276
Query: 291 LVDDEGLDETKTHSSGADSAKPSGQSPTNKKVQQTLIHSVGSPDKLRYQLPGEAELVEEA 350
+G+ +++ S A+S+ PS TNK V+ L VGSPDK+R+QLPGE +LVEEA
Sbjct: 277 ----QGVVDSREKQSIAESSAPS---ITNKMVKPMLTQGVGSPDKVRFQLPGEVQLVEEA 329
Query: 351 DRLLDGLGPRFTDWWGYDPQPVDADLLPATVPGYRRPFRLLPYGVQPKLTNDEMTTLRRL 410
DRLL+GLGPRFTDWW YDP PVD DLLPA VP YRRPFRLLPYGV PKLT+DEMTT+RRL
Sbjct: 330 DRLLEGLGPRFTDWWAYDPLPVDGDLLPAVVPDYRRPFRLLPYGVSPKLTDDEMTTIRRL 389
Query: 411 GRPLPCHFALGRNRNLQGLAAAIVKLWEKCEIAKIAVKRGAQNTNSEMMAQEL------- 463
GRPLPCHFALGRNRNLQGLA AIVKLWEKCE+AKIAVKRG QNTNSE+MA+EL
Sbjct: 390 GRPLPCHFALGRNRNLQGLAVAIVKLWEKCELAKIAVKRGVQNTNSELMAEELKVVGLLL 449
Query: 464 --KRLTGGTLLSRDREFIVFYRGKDFLPPAASSAIEERRKHEFSTSNDSKEEPELG-NRH 520
K LTGGTL+SRD++FIV YRGKDFLP A SSAIEERR+ N S +L N
Sbjct: 450 VIKWLTGGTLISRDKDFIVLYRGKDFLPSAVSSAIEERRRQTMIMENSSVHGNKLTENEE 509
Query: 521 DNSGDNTQDEFGC-TNDQKSTMHSEQ---KERRSAEVAIRRTNIRLSRVLEKKAEAEKLL 576
+ +++ DQK + + Q ++R S E + +T+++LS LEKKA AEK+L
Sbjct: 510 EIKPRAVKEDIELEAKDQKDHIQTHQMKSRQRNSPEAILEKTSMKLSMALEKKANAEKVL 569
Query: 577 AELEE-ERPEQYEVDKEGITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVENMHLHWKHR 635
A+LE E P+ ++DKEGIT +E+YMLRK+GL+MK FLL+GRRGVFDGT+ENMHLHWK+R
Sbjct: 570 ADLENRESPQLSDIDKEGITNDEKYMLRKIGLKMKPFLLLGRRGVFDGTIENMHLHWKYR 629
Query: 636 ELVKIISKQRKIEAALQEARTLEVESGGILVAVERVNKGYAIILYRGKNYERPACLRPKT 695
ELVKII + IEAA + A LE ESGGILVAVE V+KGYAII+YRGKNYERP CLRP+T
Sbjct: 630 ELVKIICNEYSIEAAHKVAEILEAESGGILVAVEMVSKGYAIIVYRGKNYERPQCLRPQT 689
Query: 696 LLTKREAMKRSLEAQRRQSLKLHVLELTRNIEKLKLQLVKDKEANSLETIDESILPLVKE 755
LL+KREA+KRS+EAQRR+SLKLHVL+L+ NIE+L QLV+D N + ES +V+E
Sbjct: 690 LLSKREALKRSVEAQRRKSLKLHVLKLSNNIEELNRQLVEDSATNETWSDGESSNMMVEE 749
Query: 756 EIGDM-----QPAECMRSDTSHEVNVQARGECGADLTSTESNDTGDATIDGPPAIQQDKQ 810
E + + E + S +++V + GE + D + +D
Sbjct: 750 ETENQHTEPEKAREKIELGYSSDLSVPSSGEENWE-------DDSEGEVD---------- 792
Query: 811 TESLTHNGISINEIESKSSLKSVSKESQLNMIADF--FAEGVASGTSSCPDNSMQEVMEY 868
LT + E ES+S+ + + L+ A+ FAE ++ SS D S+ +
Sbjct: 793 --PLTTSSQEYQEDESESASSQRHEGNSLDSTANLSVFAETGSANASSFHDRSLP----H 846
Query: 869 NTIVDAE-QCSSDNEPRESSIESAKSRSSENEPIEQSFELAKGRSGLSTPIGTGNVWNEN 927
N+ ++A + + S I + + R SEN+ GL T
Sbjct: 847 NSFLNANRKLPGSSTGSGSQISALRERKSEND-------------GLVT----------- 882
Query: 928 NSRAIQLSNRDRLLLRKQALRMKKRPVLAVGRSNIVTGVAKAIKAHFEKYPLAIVNVKGR 987
LSNR+RL+LRKQAL+MKKRP AVGRSN+VTG+A+ +K HF+K PLAIVNVKGR
Sbjct: 883 -----DLSNRERLILRKQALKMKKRPPFAVGRSNVVTGLARTLKMHFQKNPLAIVNVKGR 937
Query: 988 AKGTSVQEVVAKLEEATGAVLVSQEPSKVILYRGWGAEDESSPRGRQN----SRAKPSIV 1043
A GTSVQEV+AKL+E TGA+LVSQEPSKVILYRGWGAE+E N S PS
Sbjct: 938 ANGTSVQEVIAKLKEETGALLVSQEPSKVILYRGWGAEEEMKSFYPNNNVKSSINLPSTR 997
Query: 1044 RDVRPWPAVSRELLAAIKLECGL 1066
V P VS L+ AI+LECGL
Sbjct: 998 SFVDDPPHVSPALIEAIRLECGL 1020
>gi|449459492|ref|XP_004147480.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
chloroplastic-like [Cucumis sativus]
Length = 1032
Score = 1000 bits (2585), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 564/1059 (53%), Positives = 723/1059 (68%), Gaps = 64/1059 (6%)
Query: 24 FFT--FHKTLSLQNPEKPSIFVISCSKTQNPLTQSETRVQNDTTSAIQRIADKLRSLGIV 81
FF FH TL + P K S F++ C SET + SAIQRIADKLRSLG
Sbjct: 23 FFPSHFHPTL-ISRPPKSSRFLLRCCSID-----SETLPK----SAIQRIADKLRSLGFT 72
Query: 82 EQTTSKDDTLNPEPETRATDNAGEIFIPLPHRIPKYRVGHTIDDSWSTPENPVPVPGTGA 141
E P P+ + G IF+PLP+++PKYRVGHTID SWS PENPVP PGTG
Sbjct: 73 ESPP------EPLPDPNSPSAPGAIFVPLPNQLPKYRVGHTIDSSWSMPENPVPEPGTGT 126
Query: 142 AIVRYNQLNKEVGRQKWLAKNS-KMNEKEKEVPTLAELKLSGKELRRLRTLGIGLRKKLK 200
AI R+++L EV QKW ++ + ++E+ P+LAEL L+ +EL RLRT+GI L+KKL
Sbjct: 127 AIKRFHELRGEV--QKWKKRDGVREKKREERAPSLAELSLTEEELGRLRTIGIRLKKKLN 184
Query: 201 IGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRTHDSLERKTGGLVVWRSGSKII 260
+GKAGITEGIVN IHE WR +EVVKI CEDLCRLNMKRTHD LERKTGG+VVWRSGSKII
Sbjct: 185 VGKAGITEGIVNTIHEYWRRSEVVKIACEDLCRLNMKRTHDLLERKTGGIVVWRSGSKII 244
Query: 261 LYRGADYKYPYFLADESSTDGASSDDLPNQLVDDEGLDETKTHSSGADSAKPSGQSPTNK 320
LYRG +Y YPYF + E D S D LP DD G ET++ S + + +G + + K
Sbjct: 245 LYRGPNYIYPYF-SHEILEDEGSQDALPASHSDDGGNSETESTLSCINDERSAGPTSSVK 303
Query: 321 KVQQTLIHSVGSPDKLRYQLPGEAELVEEADRLLDGLGPRFTDWWGYDPQPVDADLLPAT 380
TLI VG+P+++R+QLPGEAEL E+A+ LL+GLGPRF+DWWGYDP PVDADLLPA
Sbjct: 304 MPSPTLIQGVGAPNRVRFQLPGEAELAEDAESLLEGLGPRFSDWWGYDPLPVDADLLPAI 363
Query: 381 VPGYRRPFRLLPYGVQPKLTNDEMTTLRRLGRPLPCHFALGRNRNLQGLAAAIVKLWEKC 440
VPGYR+PFRLLPYGV+PKLTNDEMT+LRRL RPLPCHFALGRNR LQGLAA+I++LWEKC
Sbjct: 364 VPGYRKPFRLLPYGVKPKLTNDEMTSLRRLARPLPCHFALGRNRKLQGLAASIIQLWEKC 423
Query: 441 EIAKIAVKRGAQNTNSEMMAQELKRLTGGTLLSRDREFIVFYRGKDFLPPAASSAIEERR 500
EIAKIAVKRG QNTN+++MA+EL+ LTGGTLLSRDREFIV YRGKDFLP A SSA+E++R
Sbjct: 424 EIAKIAVKRGVQNTNNKLMAEELQLLTGGTLLSRDREFIVLYRGKDFLPFAVSSAMEQKR 483
Query: 501 K---HEFSTSNDSKEEPELGNRHDNSGDNTQDEFGCTNDQKST-----MHSEQKERRSAE 552
HE +++S G + + +E G TN+ +S + SE+++ S+E
Sbjct: 484 HMRLHEMKQTDNSPATTGQGLKLE------INENGPTNESQSITGWKKIVSERRKLMSSE 537
Query: 553 VAIRRTNIRLSRVLEKKAEAEKLLAEL-EEERPEQYEVDKEGITEEERYMLRKVGLRMKA 611
++R+T+I+LS LEKKA+AE+ LA+L EEE+ +Q E+DKEGIT EERYML+KVGLRMK
Sbjct: 538 TSMRKTSIKLSIALEKKAKAEEFLAKLEEEEKLQQPEIDKEGITVEERYMLKKVGLRMKP 597
Query: 612 FLLMGRRGVFDGTVENMHLHWKHRELVKIISKQRKIEAALQEARTLEVESGGILVAVERV 671
FLL+GRRGVFDGTVENMHLHWK+RELVKII+ +R + ARTLE ESGGILVAVERV
Sbjct: 598 FLLLGRRGVFDGTVENMHLHWKYRELVKIITNERSFKTVHDVARTLEAESGGILVAVERV 657
Query: 672 NKGYAIILYRGKNYERPACLRPKTLLTKREAMKRSLEAQRRQSLKLHVLELTRNIEKLKL 731
+ +AII++RGKNY+RP+ LRP++LL K+EA+KRS+EAQRR+SLKLHVL+LT+N+E+LKL
Sbjct: 658 KRSFAIIIFRGKNYKRPSRLRPESLLNKKEALKRSIEAQRRKSLKLHVLKLTQNVEELKL 717
Query: 732 QLVKDKEANSLETIDESILPLVKEEIGDMQPAECMRSDTSHEVNVQARGECGADLTSTES 791
+L +DK A +E+I S KE I ++Q T+ + + A C LT E+
Sbjct: 718 KLDEDKRAIGMESIKTSTFQQGKEGIDEIQ--------TTGSLKLVADSAC---LTHAEN 766
Query: 792 NDTGDATIDGPPAIQQDKQTESLTHNGISINEIESKSSLKSVSKESQLNMIADFFAEGVA 851
+ + + S+N +++ + + + Q N E V
Sbjct: 767 STCLEENEVAKVKKGHGTHSSGTICLDTSVNRLQTTNDVFLIHNGDQSNATVRPSFESVR 826
Query: 852 SGTSSCPDNSMQEVMEYNTIVDAEQCSSDNEPRESSIESAKSRSSENEPIEQSFELAKGR 911
G + M E+ TI +S + S A + N+ + S L + +
Sbjct: 827 QGNHA--KVPMDTNAEFGTIEPQSGANSLSGESNSGTSDAVHHVAMNKDTKPSVRLEEEK 884
Query: 912 SGLSTPIGTGNVWNENN---SRAIQLSNRDRLLLRKQALRMKKRPVLAVGRSNIVTGVAK 968
S P+ + N+ + QLSN++RLLLR+QAL+MKK PVL+VG+SN++TGVAK
Sbjct: 885 ---SPPLLSSTRINQPGYFPANVPQLSNKERLLLRRQALKMKKLPVLSVGKSNVITGVAK 941
Query: 969 AIKAHFEKYPLAIVNVKGRAKGTSVQEVVAKLEEATGAVLVSQEPSKVILYRGWGAEDES 1028
AIK HF+K+ LAIVNVKGRAKGTSVQE+V KLE+ATGAVLVSQEPSKVILYRGW ED
Sbjct: 942 AIKEHFKKHSLAIVNVKGRAKGTSVQEIVFKLEQATGAVLVSQEPSKVILYRGWEEEDRK 1001
Query: 1029 SPRGRQNSRAKPSIVRDVRPWPAVSRELLAAIKLECGLQ 1067
+ + + ++S EL+AAI++ECGL+
Sbjct: 1002 QKATMMKNSGEDRL--------SMSSELMAAIRIECGLR 1032
>gi|449515235|ref|XP_004164655.1| PREDICTED: LOW QUALITY PROTEIN: chloroplastic group IIA intron
splicing facilitator CRS1, chloroplastic-like [Cucumis
sativus]
Length = 1053
Score = 991 bits (2562), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 567/1076 (52%), Positives = 731/1076 (67%), Gaps = 65/1076 (6%)
Query: 9 NPILLPKTLTNSSSPFFTFHKTLSLQNPE---KPSIFVISCSKTQNPLTQSETRVQNDTT 65
+P+ P + TNS P + H T + + K S F++ C SET +
Sbjct: 26 SPLHSPFSTTNSLHPSPSSHLTSTPHSSPVLLKSSRFLLRCCSID-----SETLPK---- 76
Query: 66 SAIQRIADKLRSLGIVEQTTSKDDTLNPEPETRATDNAGEIFIPLPHRIPKYRVGHTIDD 125
SAIQRIADKLRSLG E T TL P+ + G IF+PLP+++PKYRVGHTID
Sbjct: 77 SAIQRIADKLRSLGFTEXTPR---TL---PDPNSPSAPGAIFVPLPNQLPKYRVGHTIDS 130
Query: 126 SWSTPENPVPVPGTGAAIVRYNQLNKEVGRQKWLAKNS-KMNEKEKEVPTLAELKLSGKE 184
SWSTPENPVP PGTG AI R+++L EV QKW ++ + ++E+ P+LAEL L+ +E
Sbjct: 131 SWSTPENPVPEPGTGTAIKRFHELRGEV--QKWKKRDGVREKKREERAPSLAELSLTEEE 188
Query: 185 LRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRTHDSLE 244
L RLRT+GI L+KKL +GKAGITEGIVN IHE WR +EVVKI CEDLCRLNMKRTHD LE
Sbjct: 189 LGRLRTIGIRLKKKLNVGKAGITEGIVNTIHEFWRRSEVVKIACEDLCRLNMKRTHDLLE 248
Query: 245 RKTGGLVVWRSGSKIILYRGADYKYPYFLADESSTDGASSDDLPNQLVDDEGLDETKTHS 304
RKTGG+VVWRSGSKIILYRG +Y YPYF + E D S D LP DD G ET++
Sbjct: 249 RKTGGIVVWRSGSKIILYRGPNYIYPYF-SHEILEDEGSQDALPASHSDDGGNSETESTL 307
Query: 305 SGADSAKPSGQSPTNKKVQQTLIHSVGSPDKLRYQLPGEAELVEEADRLLDGLGPRFTDW 364
S + + +G + K TLI VG+P+++R+QLPGEAEL E+A+ LL+GLGPRF+DW
Sbjct: 308 SCINDERSAGPTSYVKMPSPTLIQGVGAPNRVRFQLPGEAELAEDAESLLEGLGPRFSDW 367
Query: 365 WGYDPQPVDADLLPATVPGYRRPFRLLPYGVQPKLTNDEMTTLRRLGRPLPCHFALGRNR 424
WGYDP PVDADLLPA VPGYR+PFRLLPYGV+PKLTNDEMT+LRRL RPLPCHFALGRNR
Sbjct: 368 WGYDPLPVDADLLPAIVPGYRKPFRLLPYGVKPKLTNDEMTSLRRLARPLPCHFALGRNR 427
Query: 425 NLQGLAAAIVKLWEKCEIAKIAVKRGAQNTNSEMMAQELKRLTGGTLLSRDREFIVFYRG 484
LQGLAA+I++LWEKCEIAKIAVKRG QNTN+++MA+EL+ LTGGTLLSRDREFIV YRG
Sbjct: 428 KLQGLAASIIQLWEKCEIAKIAVKRGVQNTNNKLMAEELQLLTGGTLLSRDREFIVLYRG 487
Query: 485 KDFLPPAASSAIEERRK---HEFSTSNDSKEEPELGNRHDNSGDNTQDEFGCTNDQKST- 540
KDFLP A SSA+E++R HE +++S G + + +E G TN+ +S
Sbjct: 488 KDFLPFAVSSAMEQKRHMRLHEMKQTDNSPATTGQGLKLE------INENGPTNESQSIT 541
Query: 541 ----MHSEQKERRSAEVAIRRTNIRLSRV-LEKKAEAEKLLAEL-EEERPEQYEVDKEGI 594
+ SE+++ S+E ++R+T+I+LS V + KKA+AE+ LA+L EEE+ +Q E+DKEGI
Sbjct: 542 GWKKIVSERRKLMSSETSMRKTSIKLSIVCIRKKAKAEEFLAKLEEEEKLQQPEIDKEGI 601
Query: 595 TEEERYMLRKVGLRMKAFLLMGRRGVFDGTVENMHLHWKHRELVKIISKQRKIEAALQEA 654
T EERYML+KVGLRMK FLL+GRRGVFDGTVENMHLHWK+RELVKII+ +R + A
Sbjct: 602 TVEERYMLKKVGLRMKPFLLLGRRGVFDGTVENMHLHWKYRELVKIITNERSFKTVHDVA 661
Query: 655 RTLEVESGGILVAVERVNKGYAIILYRGKNYERPACLRPKTLLTKREAMKRSLEAQRRQS 714
RTLE ESGGILVAVERV + +AII++RGKNY+RP+ LRP++LL K+EA+KRS+EAQRR+S
Sbjct: 662 RTLEAESGGILVAVERVKRSFAIIIFRGKNYKRPSRLRPESLLNKKEALKRSIEAQRRKS 721
Query: 715 LKLHVLELTRNIEKLKLQLVKDKEANSLETIDESILPLVKEEIGDMQPAECMRSDTSHEV 774
LKLHVL+LT+N+E+LKL+L +DK A +E+I S KE I ++Q T+ +
Sbjct: 722 LKLHVLKLTQNVEELKLKLDEDKRAIGMESIKTSTFQPGKEGIDEIQ--------TTGSL 773
Query: 775 NVQARGECGADLTSTESNDTGDATIDGPPAIQQDKQTESLTHNGISINEIESKSSLKSVS 834
+ A C LT E++ + + S+N +++ + + +
Sbjct: 774 KLVADSAC---LTHAENSTCLEENEVAKVKKGHGTHSSGTICLDTSVNRLQTTNDVFLIH 830
Query: 835 KESQLNMIADFFAEGVASGTSSCPDNSMQEVMEYNTIVDAEQCSSDNEPRESSIESAKSR 894
Q N E V G + M E+ TI +S + S A
Sbjct: 831 NGDQSNATVRPSFESVRQGNHA--KVPMDTNAEFGTIEPQSGANSLSGESNSGTSDAVHH 888
Query: 895 SSENEPIEQSFELAKGRSGLSTPIGTGNVWNENN---SRAIQLSNRDRLLLRKQALRMKK 951
+ N+ + S L + + S P+ + N+ + QLSN++RLLLR+QAL+MKK
Sbjct: 889 VAMNKDTKPSVRLEEEK---SPPLLSSTRINQPGYFPANVPQLSNKERLLLRRQALKMKK 945
Query: 952 RPVLAVGRSNIVTGVAKAIKAHFEKYPLAIVNVKGRAKGTSVQEVVAKLEEATGAVLVSQ 1011
PVL+VG+SN++TGVAKAIK HF+K+ LAIVNVKGRAKGTSVQE+V KLE+ATGAVLVSQ
Sbjct: 946 LPVLSVGKSNVITGVAKAIKEHFKKHSLAIVNVKGRAKGTSVQEIVFKLEQATGAVLVSQ 1005
Query: 1012 EPSKVILYRGWGAEDESSPRGRQNSRAKPSIVRDVRPWPAVSRELLAAIKLECGLQ 1067
EPSKVILYRGW ED + + + ++S EL+AAI++ECGL+
Sbjct: 1006 EPSKVILYRGWEEEDRKQKATMMKNSGEDRL--------SMSSELMAAIRIECGLR 1053
>gi|356573408|ref|XP_003554853.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
chloroplastic-like [Glycine max]
Length = 1027
Score = 984 bits (2544), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 565/1110 (50%), Positives = 719/1110 (64%), Gaps = 138/1110 (12%)
Query: 5 HYYHNPILLPKTLTNSSSPFFTFHKTLSLQNPEKPSIFVISCSKTQNPLTQSETRVQNDT 64
HY+H + ++SSS T H LQ P+ F+I CS T+
Sbjct: 9 HYFHTFPSSSSSSSSSSSSSSTLH-IFPLQFPKPKPKFLIRCSDTETL-----------P 56
Query: 65 TSAIQRIADKLRSLGIVEQTTSKDDTLNPEPETRATDNAGEIFIPLPHRIPKYRVGHTID 124
SAIQRIADKLRSLGI +Q + T P P + +AGEIF+PLP ++P RVGHTID
Sbjct: 57 DSAIQRIADKLRSLGIADQPS----TATPGP---SDSDAGEIFVPLPQQLPTRRVGHTID 109
Query: 125 DSWSTPENPVPVPGTGAAIVRYNQLNKEVGRQKWLAKNSKMNEKEKEVPTLAELKLSGKE 184
+W +K +E +VPTLAEL LS E
Sbjct: 110 PTW-----------------------------------AKRERREDKVPTLAELSLSDAE 134
Query: 185 LRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRTHDSLE 244
+RRL T G+ +R+KL++GKAG+TEGIVNGIHERWR EVV+IVCEDL R NMKRTHD LE
Sbjct: 135 IRRLTTAGLAMRQKLRVGKAGLTEGIVNGIHERWRSFEVVRIVCEDLSRFNMKRTHDLLE 194
Query: 245 RKTGGLVVWRSGSKIILYRGADYKYPYFLADESSTDGASSDDLPNQLVDDEGLDETKTHS 304
RKTGGLVVWRSGSKIILYRG DYKYPYFL+D+ S D + D + + D + D+ ++HS
Sbjct: 195 RKTGGLVVWRSGSKIILYRGTDYKYPYFLSDKVSRDDNTGDAMQHMDEDAKNFDKRESHS 254
Query: 305 SGADSAKPSGQSPTNKKVQQTLIHSVGSPDKLRYQLPGEAELVEEADRLLDGLGPRFTDW 364
S +S +G+S K + LI VGSP+K+R+QLPGEAEL ++AD LL G+GPRF DW
Sbjct: 255 SEKNSVTYAGKSSNVKTAKPALIQGVGSPNKVRFQLPGEAELAKDADSLLTGIGPRFIDW 314
Query: 365 WGYDPQPVDADLLPATVPGYRRPFRLLPYGVQPKLTNDEMTTLRRLGRPLPCHFALGRNR 424
WGYDP PVDADLLPA +PGYR+PFRLLPYGV+PKLT+DEMTT+RRLG+ LPCHFALGRN+
Sbjct: 315 WGYDPLPVDADLLPAVIPGYRKPFRLLPYGVKPKLTDDEMTTMRRLGKHLPCHFALGRNK 374
Query: 425 NLQGLAAAIVKLWEKCEIAKIAVKRGAQNTNSEMMAQELKRLTGGTLLSRDREFIVFYRG 484
L GLAAAI+KLWE+CEI KIA+KRG NTN E+MA+E+K LTGGTL++RD+EFIVFYRG
Sbjct: 375 KLHGLAAAIIKLWERCEIVKIAIKRGVLNTNGELMAEEIKYLTGGTLIARDKEFIVFYRG 434
Query: 485 KDFLPPAASSAIEERRK---HEFSTSN--DSKEEPELGNRHDNSGDNTQDEFGCTNDQKS 539
KDFLP A SSAIE+RR ++ T N ++P+L + D+ D K
Sbjct: 435 KDFLPTAVSSAIEQRRSIGMYKLKTRNSLSVTDDPDLKDGTIEC-DSEVKGMNFKKDTKQ 493
Query: 540 TMHSEQKERRSAEVAIRRTNIRLSRVLEKKAEAEKLLAELEE-ERPEQYEVDKEGITEEE 598
M +E AE AI+ T+I+LS LE+KA+AEKLL+ELE E P++ E++KEGITEEE
Sbjct: 494 GMLTE------AEAAIKSTSIKLSMALEEKAKAEKLLSELENAESPQEEEINKEGITEEE 547
Query: 599 RYMLRKVGLRMKAFLLMGRRGVFDGTVENMHLHWKHRELVKII-SKQRKIEAALQEARTL 657
+YMLR++GL+M FLL+GRRGVFDGTVENMHLHWK+RELVKII +KQ +E Q A+TL
Sbjct: 548 KYMLRRIGLKMSPFLLLGRRGVFDGTVENMHLHWKYRELVKIICNKQMSLEDVQQIAQTL 607
Query: 658 EVESGGILVAVERVNKGYAIILYRGKNYERPACLRPKTLLTKREAMKRSLEAQRRQSLKL 717
E ESGGIL+AVERVNK YAII+YRGKNY RPA LRP+TLL K++A+KRS+EAQR +SLKL
Sbjct: 608 EAESGGILIAVERVNKSYAIIVYRGKNYSRPASLRPRTLLNKKQALKRSIEAQRCESLKL 667
Query: 718 HVLELTRNIEKLKLQLVKDKEANSLETIDESILPLVKEEIGDMQPAECMRSDTSHE---- 773
HVL+L RNI +LK Q+ KD EANS +T + ++ QP E + S +H+
Sbjct: 668 HVLKLDRNINELKHQMAKDMEANSKQT------SVDNQQAIQEQPVELIDSGGAHQAEPG 721
Query: 774 --VNVQARGECGADLTST------ESNDTG-----------------DATIDGPPAIQQD 808
+N E D T E D G +A++D AIQ
Sbjct: 722 NSINWNYPKEASVDYQQTMQEQSVELFDGGGAVQSEPQNSINWNSPKEASVDNQQAIQGQ 781
Query: 809 KQ---TESLTHNGISINEIESKSSLKSVSKESQL--NMIADFFAEGVA------SGTSSC 857
S H+G N I+ S ++ Q + G A S +
Sbjct: 782 SFELIDRSEAHHGEPENSIDWNSPEEASVDNQQAIQGQPVELIDGGGAHQDEPESWSGLI 841
Query: 858 PDNSMQEVMEYNTIVDAEQCSSDNEPRESSIESAKSRSSENEPIEQSFELAKGRSGLSTP 917
P + + + +++VD + C S ++ ESSI +SE++P +L+ +S+
Sbjct: 842 PKETKLD-RDSDSVVDTQHCVSISKVMESSI-----VASESDP-----DLSALVRDMSS- 889
Query: 918 IGTGNVWNENNSRAIQLSNRDRLLLRKQALRMKKRPVLAVGRSNIVTGVAKAIKAHFEKY 977
NE SR++ LSNR+RLLLRKQAL+MKKRPVL+VG+SNIVTG+AKAIKAHF+K+
Sbjct: 890 -------NELPSRSVYLSNRERLLLRKQALKMKKRPVLSVGKSNIVTGLAKAIKAHFQKH 942
Query: 978 PLAIVNVKGRAKGTSVQEVVAKLEEATGAVLVSQEPSKVILYRGWGAEDESSPRGRQNSR 1037
PLAIVNVKGRAKGTS+QEVV+KLE+ TGAVLVSQE +KVILYRGWG ++ S +
Sbjct: 943 PLAIVNVKGRAKGTSIQEVVSKLEQETGAVLVSQELNKVILYRGWGEGEKPS-----TAI 997
Query: 1038 AKPSIVRDVRPWPAVSRELLAAIKLECGLQ 1067
+ ++V P VS ELL AI++ECGLQ
Sbjct: 998 NFDKVGKEVAAKPGVSPELLEAIRVECGLQ 1027
>gi|357496109|ref|XP_003618343.1| Chloroplastic group IIA intron splicing facilitator CRS1 [Medicago
truncatula]
gi|355493358|gb|AES74561.1| Chloroplastic group IIA intron splicing facilitator CRS1 [Medicago
truncatula]
Length = 1096
Score = 964 bits (2493), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 559/1049 (53%), Positives = 695/1049 (66%), Gaps = 98/1049 (9%)
Query: 66 SAIQRIADKLRSLGIVEQTTSKDDTLNPEPETRATDNAGEIFIPLPHRIPKYRVGHTIDD 125
SAIQRIADKL SLGI+ TT + + T +T AGEIF+PLPH +PKYRVGHT+D
Sbjct: 46 SAIQRIADKLHSLGIITTTTGHSSSSS----TTSTTTAGEIFLPLPHTLPKYRVGHTLDL 101
Query: 126 SWSTPENPVPVPGTGAAIVRYNQLNKEVGRQKWLAKNSKMNEKEKEVPTLAELKLSGKEL 185
SWSTPENPVP+ G G + N EV R + LAK K EK K VPTLAEL L+ E+
Sbjct: 102 SWSTPENPVPLVGAGLEKLSEN----EVERAR-LAKEKKREEKRKRVPTLAELSLTDGEI 156
Query: 186 RRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRTHDSLER 245
RLR LG +++K+K+GKAG+TEGIVNGIHERWR +EVV++VCEDLCR+NMKRTHD LER
Sbjct: 157 LRLRELGYQMKQKIKVGKAGVTEGIVNGIHERWRRSEVVRVVCEDLCRINMKRTHDILER 216
Query: 246 KTGGLVVWRSGSKIILYRGADYKYPYFLADESSTDGASSDDLPNQLVDDEGLDETKTHSS 305
KTGGLVVWRSGSKIILYRG DYKYPYFL+DE + SD L DDE +DE KTHSS
Sbjct: 217 KTGGLVVWRSGSKIILYRGIDYKYPYFLSDEVLRE-EESDALQPMDSDDESIDERKTHSS 275
Query: 306 GADSAKPSGQSPTNKKVQQTLIHSVGSPDKLRYQLPGEAELVEEADRLLDGLGPRFTDWW 365
SA +GQS K V+ L+ VG+P+++R+QLPGEAEL+EE D LL+GLGPRFTDWW
Sbjct: 276 EMSSATHAGQSSNIKTVKPALVQGVGTPNRVRFQLPGEAELLEEVDSLLEGLGPRFTDWW 335
Query: 366 GYDPQPVDADLLPATVPGYRRPFRLLPYGVQPKLTNDEMTTLRRLGRPLPCHFALGRNRN 425
GYDP PVDADLLPA +PG+R PFRLLPYGVQ KLT+DEMTTL+RLGR LPCHFALGRN
Sbjct: 336 GYDPVPVDADLLPAVIPGFRPPFRLLPYGVQSKLTDDEMTTLKRLGRTLPCHFALGRNWK 395
Query: 426 LQGLAAAIVKLWEKCEIAKIAVKRGAQNTNSEMMAQELKRLTGGTLLSRDREFIVFYRGK 485
LQG+AAAI+K WE+CEI IAVKRG QNT++ MA+E+K LTGGTLLSR++E IV YRGK
Sbjct: 396 LQGVAAAIIKFWERCEIVNIAVKRGVQNTSNRKMAEEIKYLTGGTLLSRNKEVIVIYRGK 455
Query: 486 DFLPPAASSAIEERRKHEFSTSNDSKEEPELGNRHDNSGDNTQDEFGCTNDQKSTMHSEQ 545
DFLP A SSAI++R K + +KE E + S + + D+++ E+
Sbjct: 456 DFLPAAVSSAIKKRWK-----AVKNKENAENRSAITASSHSERKHMTFIKDKETI---EK 507
Query: 546 KERRSAEVAIRRTNIRLSRVLEKKAEAEKLLAELE-EERPEQYEVDKEGITEEERYMLRK 604
A+ AI+RT+ +L++ LEKK +AEKLL LE +E ++ E+DKE ITEEERYMLR+
Sbjct: 508 PLLMKAKAAIQRTSFKLAQALEKKEKAEKLLESLEKDESLQEEEIDKESITEEERYMLRR 567
Query: 605 VGLRMKAFLLMGRRGVFDGTVENMHLHWKHRELVKIISKQRKIEAALQEARTLEVESGGI 664
+GL+MK FLL+GRRGVFDGTVENMHLHWK+RELVKII Q +E A Q ARTLE ESGGI
Sbjct: 568 IGLKMKPFLLLGRRGVFDGTVENMHLHWKYRELVKIICNQESVEYAHQTARTLEAESGGI 627
Query: 665 LVAVERVNKGYAIILYRGKNYERPACLRPKTLLTKREAMKRSLEAQRRQSLKLHVLELTR 724
LVAVERVNKGYAII+YRGKNY RP LRP+TLL K++A+KRS+EAQRR++LKLHVL+L +
Sbjct: 628 LVAVERVNKGYAIIVYRGKNYSRPDSLRPRTLLNKKQALKRSIEAQRREALKLHVLKLDK 687
Query: 725 NIEKLKLQLVKDKEANSLETIDESILPLVKE------EIGDMQPAECMRSDTSHEVNVQA 778
NI +LK Q+VKD EA+S + E L E + + QP + H + +
Sbjct: 688 NINELKHQMVKD-EASSEQIAKELRSDLATENSPEEASVDNQQPIQ-----EQHIELIGS 741
Query: 779 RGECGADLTS----------TESNDTGDATIDGPPAIQQDKQTESLTHNGISINEIESKS 828
GEC + S N +A++D IQ+ + E + E ES +
Sbjct: 742 GGECQGEPESLTGLVHQERQATKNSLEEASVDNQQPIQE-QHIELIDTGEECQGEPESLT 800
Query: 829 SLKSVSKESQLNMIADFF------------AEGVASGTSSCPDNSMQEVME--------- 867
L V +E QL+ + DF +EG S P+ S + E
Sbjct: 801 GL--VHQERQLDEVDDFVVDTGHSVSTNKASEGSIISFKSDPEPSAPVINENSNEFPSSL 858
Query: 868 ----------YNTIVDAEQCSSDNEPRESSIESAKSRSSENEPIEQSFELAKGRSGLSTP 917
+++VD S N+ E+SI S K + P+ +P
Sbjct: 859 VHPKRQLDEVSDSVVDTGHSVSTNDAMEASIISFKRDPEPSAPVIN-----------KSP 907
Query: 918 IGTGNVWNENNSRAIQLSNRDRLLLRKQALRMKKRPVLAVGRSNIVTGVAKAIKAHFEKY 977
I E +SR+ LSNR+RLLLRKQALRMKK P++ +G+SNIV G+ +AIK ++
Sbjct: 908 I-------EFSSRSSSLSNRERLLLRKQALRMKKIPIVPIGKSNIVAGLEEAIKNLLRRH 960
Query: 978 PLAIVNVKGRAKGTSVQEVVAKLEEATGAVLVSQEPSKVILYRGWGAEDESSPRGRQNSR 1037
P IVNVKGRAKGTSV E+V+ LEEATGAVLVSQEPSK+ILYRGWGA + R +
Sbjct: 961 PFVIVNVKGRAKGTSVHELVSILEEATGAVLVSQEPSKIILYRGWGAGTQ-----RHTNS 1015
Query: 1038 AKPSIVRDVRPWPAVSRELLAAIKLECGL 1066
+ D P VS ELL AI++ECGL
Sbjct: 1016 IYRGVAEDGGAKPNVSPELLEAIRIECGL 1044
>gi|224059986|ref|XP_002300024.1| predicted protein [Populus trichocarpa]
gi|222847282|gb|EEE84829.1| predicted protein [Populus trichocarpa]
Length = 1012
Score = 932 bits (2410), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 482/743 (64%), Positives = 561/743 (75%), Gaps = 44/743 (5%)
Query: 13 LPKTLTNSSSPFFTFHKTLSLQNPEKPSIFVISCSKTQNPLTQSETRVQNDTTSAIQRIA 72
+PKTL F +H + S N F++ S NP Q SAIQRIA
Sbjct: 26 IPKTL------IFEYHNSSSSSNNNPSLKFLVRSSSADNP--------QTLPHSAIQRIA 71
Query: 73 DKLRSLGIVEQTTSKDDTLNPEPETRATDNAGEIFIPLPHRIPKYRVGHTIDDSWSTPEN 132
DKLRSLG E+T ET+A AGEIF+PLP+R+PKYRVG T+D SWSTPEN
Sbjct: 72 DKLRSLGFTEET-----------ETKAQTTAGEIFVPLPNRLPKYRVGQTLDPSWSTPEN 120
Query: 133 PVPVPGTGAAIVRYNQLNKEVGRQKWLAKNSKMNEKEKEVPTLAELKLSGKELRRLRTLG 192
PVPVPG+G AI RY++L +EV R++ K E +VP+LAEL L +ELRRLRT+G
Sbjct: 121 PVPVPGSGKAISRYHELRREVKREREAKKG------EAKVPSLAELSLPNEELRRLRTIG 174
Query: 193 IGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRTHDSLERKTGGLVV 252
I ++KLK+GKAGITEGIVNGIHERWR +EVVKIVCEDLCR+NMKRTHD LERKTGGLVV
Sbjct: 175 IAEKRKLKVGKAGITEGIVNGIHERWRRSEVVKIVCEDLCRMNMKRTHDLLERKTGGLVV 234
Query: 253 WRSGSKIILYRGADYKYPYFLADESSTDGASSDDLPNQLVDDEGLDETKTHSSGADSAKP 312
WR GSKI+LYRGADYKYPYFLA+ SS + S D + N VDD+ +DE + S D A P
Sbjct: 235 WRVGSKIVLYRGADYKYPYFLAETSSVNETSPDAVQNIDVDDKEVDEEGSVLSAVDGAAP 294
Query: 313 SGQSPTNKKVQQTLIHSVGSPDKLRYQLPGEAELVEEADRLLDGLGPRFTDWWGYDPQPV 372
+++ V+ +L+ VGSP+++R+QLPGEA+L EEAD+LLDGLGPRF DWWGYDP PV
Sbjct: 295 PEPRSSDEIVRPSLVQGVGSPNRVRFQLPGEAQLTEEADQLLDGLGPRFNDWWGYDPLPV 354
Query: 373 DADLLPATVPGYRRPFRLLPYGVQPKLTNDEMTTLRRLGRPLPCHFALGRNRNLQGLAAA 432
DADLLPA V GYRRPFRLLPYGV P LTNDEMTTL+RLGRPLPCHFALGRN QGLAA+
Sbjct: 355 DADLLPAVVSGYRRPFRLLPYGVSPTLTNDEMTTLKRLGRPLPCHFALGRNTKHQGLAAS 414
Query: 433 IVKLWEKCEIAKIAVKRGAQNTNSEMMAQELKRLTGGTLLSRDREFIVFYRGKDFLPPAA 492
IVKLWEKCEIAKIAVKRG QNTNSE+MAQELK LTGGTLLSRDREFIV YRGKDFLP A
Sbjct: 415 IVKLWEKCEIAKIAVKRGVQNTNSELMAQELKWLTGGTLLSRDREFIVLYRGKDFLPSAV 474
Query: 493 SSAIEERRKH--------EFSTSNDSKEEPELGNRH-DNSGDNTQDEFGCTNDQKSTMHS 543
SSAIE+RRK + TSN++ E EL +R + ++DE TND+K + S
Sbjct: 475 SSAIEDRRKRGDMDKRWTDCITSNETSE--ELKDRSWRTTNAKSRDEIDDTNDRKHDL-S 531
Query: 544 EQKERRSAEVAIRRTNIRLSRVLEKKAEAEKLLAELEE-ERPEQYEVDKEGITEEERYML 602
E K RS + AI+RT+I+LS LEKKA+AEKLL+ELE+ E +Q E DKEGITEEERYML
Sbjct: 532 ENKNLRSTDAAIKRTSIKLSMALEKKAKAEKLLSELEKSEMSQQPEKDKEGITEEERYML 591
Query: 603 RKVGLRMKAFLLMGRRGVFDGTVENMHLHWKHRELVKIISKQRKIEAALQEARTLEVESG 662
RK+GL+MK FLLMG RGVFDGT+ENMHLHWK+RELVKII K++ +A ARTLE ESG
Sbjct: 592 RKIGLKMKPFLLMGERGVFDGTIENMHLHWKYRELVKIICKEKSFQAVQAVARTLEAESG 651
Query: 663 GILVAVERVNKGYAIILYRGKNYERPACLRPKTLLTKREAMKRSLEAQRRQSLKLHVLEL 722
GILVAVE V+KGYAIILYRGKNY RPACLRP TLL+KR+AMKRSLEAQRR+SLKLHVL L
Sbjct: 652 GILVAVEGVSKGYAIILYRGKNYTRPACLRPPTLLSKRQAMKRSLEAQRRESLKLHVLRL 711
Query: 723 TRNIEKLKLQLVKDKEANSLETI 745
T NI+ LKLQLV NS +
Sbjct: 712 TSNIDHLKLQLVSLTFLNSFDCF 734
Score = 209 bits (533), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 126/218 (57%), Positives = 149/218 (68%), Gaps = 21/218 (9%)
Query: 869 NTIVDAEQCSSDNEPRESSIESAKSRSSENEPIEQSFELAKGRSGLSTPIGTGNVWNENN 928
N I++ S+ E R SI K+ S NE + S + A+ +SG S PI V E+N
Sbjct: 803 NAIIEVRYISTSKEKRSISITYLKNCVSFNEEMGSSVKSAENQSGESVPI----VVEEDN 858
Query: 929 ---SRAIQLSNRDRLLLRKQALRMKKRPVLAVGRSNIVTGVAKAIKAHFEKYPLAIVNVK 985
S + LSNRDRLLLRKQAL+MK RPVLAVGRSNIVTGVAK IKAHF+++P AIV+VK
Sbjct: 859 RKPSSVVCLSNRDRLLLRKQALKMKNRPVLAVGRSNIVTGVAKTIKAHFQRHPFAIVHVK 918
Query: 986 GRAKGTSVQEVVAKLEEATGAVLVSQEPSKVILYRGWGAEDESSPRGRQN-------SRA 1038
GRAKGTSVQEVV+KLEEATGAVLVSQEPSKVILYRGWGA E +G++N SRA
Sbjct: 919 GRAKGTSVQEVVSKLEEATGAVLVSQEPSKVILYRGWGA-GEPGHKGKENKQNAGEASRA 977
Query: 1039 KPSIVRDVRPWPAVSRELLAAIKLECGLQGQQEQEAPS 1076
K R AVS EL+ AI+LECGLQ + P+
Sbjct: 978 KG------RSRHAVSLELMEAIRLECGLQHNHQANRPT 1009
>gi|356573410|ref|XP_003554854.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
chloroplastic-like [Glycine max]
Length = 1028
Score = 928 bits (2399), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 533/1033 (51%), Positives = 677/1033 (65%), Gaps = 129/1033 (12%)
Query: 31 LSLQNPEKPSIFVISCSKTQNPLTQSETRVQNDTTSAIQRIADKLRSLGIVEQTTSKDDT 90
LQ P+ + F I CS P Q+ TR + +SAI++IA KLRSLGI E TS
Sbjct: 25 FPLQFPKSKTKFHIRCS---TPEIQTRTRRR---SSAIEQIAKKLRSLGITEPPTS---- 74
Query: 91 LNPEPETRATDNAGEIFIPLPHRIPKYRVGHTIDDSWSTPENPVPVPGTGAAIVRYNQLN 150
++ EI +P PH +PK RVGHT + SWSTP NPVPVPG+G A +
Sbjct: 75 -----------SSSEIHVPFPHELPKRRVGHTFEPSWSTPLNPVPVPGSGIAALS----K 119
Query: 151 KEVGRQKWLAKNSKMNEKEKEVPTLAELKLSGKELRRLRTLGIGL-RKKLKIGKAGITEG 209
EV RQK L KE VPTLAEL L E+RRL TLG +KK+++ KAGITE
Sbjct: 120 SEVRRQKKLRAEESRRRKEL-VPTLAELSLPDSEIRRLTTLGFSTTKKKVRLAKAGITEQ 178
Query: 210 IVNGIHERWRHAEVVKIVCEDLCRLNMKRTHDSLERKTGGLVVWRSGSKIILYRGADYKY 269
IV+ IHERW+ +EVV++ CE+L R +M+RTHD LERKTGGLVVWRSG+KIILYRGADYKY
Sbjct: 179 IVDVIHERWKRSEVVRVFCEELSRDDMRRTHDLLERKTGGLVVWRSGTKIILYRGADYKY 238
Query: 270 PYFLADE-SSTDGASSDDLPNQLVDDEGLDETKTHSSGADSAKPSGQSPTNKKVQQTLIH 328
PYFL+D+ + D S+D L + DD+ D++++H S +S + ++ + + LI
Sbjct: 239 PYFLSDKVTRQDNTSNDALQHVNADDKYCDKSESHLSEKNSVACAVENSNAETAKPALIL 298
Query: 329 SVGSPDKLRYQLPGEAELVEEADRLLDGLGPRFTDWWGYDPQPVDADLLPATVPGYRRPF 388
VG+P+K+R+QLP EAEL E+ D LL GLGPRFTDWWG DP PVDADLLPA + GYR+PF
Sbjct: 299 GVGTPNKVRFQLPDEAELAEDTDCLLTGLGPRFTDWWGGDPLPVDADLLPAVIHGYRKPF 358
Query: 389 RLLPYGVQPKLTNDEMTTLRRLGRPLPCHFALGRNRNLQGLAAAIVKLWEKCEIAKIAVK 448
RLLPYGV PKLT+DEMTTL+RLG+PLPCHFALGRNR LQGLAAAI+KLWE+CEI KIAVK
Sbjct: 359 RLLPYGVNPKLTDDEMTTLKRLGKPLPCHFALGRNRKLQGLAAAIIKLWERCEIVKIAVK 418
Query: 449 RGAQNTNSEMMAQELKRLTGGTLLSRDREFIVFYRGKDFLPPAASSAIEERR-----KHE 503
RG QNT+S++MA+ELK LTGG LLSRDREF VFYRGKD+LP A SSAI+++R K +
Sbjct: 419 RGVQNTSSKIMAKELKHLTGGILLSRDREFFVFYRGKDYLPAAVSSAIKKQRNIGMYKLK 478
Query: 504 FSTSNDSKEEPELGNRHDNSGDNT---QDEFGCTNDQKSTMHSEQKERRSAEVAIRRTNI 560
F S + P N D T E N QK T +Q+ AE AI+RT+I
Sbjct: 479 FGNSLSATVTP-------NPKDGTIECNSEVKGMNFQKDT---KQRMLTKAEEAIKRTSI 528
Query: 561 RLSRVLEKKAEAEKLLAEL-EEERPEQYEVDKEGITEEERYMLRKVGLRMKAFLLMGRRG 619
+LS LEKKA+AEKLL +L E P++ E+DKEGI++EE+YMLR++GL MK FLL+GRRG
Sbjct: 529 KLSMALEKKAKAEKLLEKLINAESPQEQEIDKEGISKEEKYMLRRIGLMMKPFLLLGRRG 588
Query: 620 VFDGTVENMHLHWKHRELVKIISKQRKIEAALQEARTLEVESGGILVAVERVNKGYAIIL 679
VFDGTVENMHLHWK+RELVKII +E Q A TLE ESGGILVAVERV KG+AII+
Sbjct: 589 VFDGTVENMHLHWKYRELVKIICNG-SLEEVHQIALTLEAESGGILVAVERVRKGFAIIV 647
Query: 680 YRGKNYERPACLRPKTLLTKREAMKRSLEAQRRQSLKLHVLELTRNIEKLKLQLVKDKEA 739
YRGKNY P CLRP+TLL KR+A+KRS+EAQRR+SLKL +L L + I +LKLQ+V+D+EA
Sbjct: 648 YRGKNYSVPVCLRPQTLLNKRQALKRSIEAQRRESLKLRILTLDKEINELKLQIVEDEEA 707
Query: 740 NSLETIDESILPLV----------------KEEIGDMQ------PAECMRSDTSHEVNVQ 777
NS + + S L + KE GD Q P E + S +H+
Sbjct: 708 NSKQMAEASRLDMATDEHEACSNFINWHSPKEASGDNQQAIQEEPVELIDSGGAHQ---- 763
Query: 778 ARGECGADLTSTESNDTGDATIDGPPAIQQDKQTESLTHNGISINEIESKSSLKSVSKES 837
G S N + +A+ID AIQ+ E + +E ES SL + KE+
Sbjct: 764 -----GEPENSISWNSSIEASIDNQQAIQEHP-VELIDGGATHQDEPESWPSL--IHKET 815
Query: 838 QLNMIADFFAEGVASGTSSCPDNSMQEVMEYNTIVDAEQCSSDNEPRESSIESAKSRSSE 897
Q + ++D ++ D E S+ + ESS +K+ +
Sbjct: 816 QSDEVSD-------------------------SVTDTELHISNRKGMESSNSLSKN---D 847
Query: 898 NEPIEQSFELAKGRSGLSTPIGTGNVWNENNSRAIQLSNRDRLLLRKQALRMKKRPVLAV 957
EP+ P+ ++ SR++ LS ++RLLLRKQAL++K+ PVLA+
Sbjct: 848 REPL--------------APV----IYMSLPSRSVHLSTKERLLLRKQALKIKQ-PVLAI 888
Query: 958 GRSNIVTGVAKAIKAHFEKYPLAIVNVKGRAKGTSVQEVVAKLEEATGAVLVSQEPSKVI 1017
G+SNIV+GV + IKAHFEK+PLA+VNVKGRAKGTSVQE+V KLE+ TGA+LVS+EPS +I
Sbjct: 889 GKSNIVSGVVQTIKAHFEKHPLAVVNVKGRAKGTSVQELVFKLEQETGALLVSREPSNII 948
Query: 1018 LYRGWGAEDESSP 1030
LYRGW +E S P
Sbjct: 949 LYRGWPSERRSRP 961
>gi|116310121|emb|CAH67138.1| OSIGBa0130P02.2 [Oryza sativa Indica Group]
Length = 1048
Score = 681 bits (1758), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 378/731 (51%), Positives = 478/731 (65%), Gaps = 80/731 (10%)
Query: 66 SAIQRIADKLRSLGIVEQTTSKDDTLNPEPETRATDNAGEIFIPLPHRIPKYRVGHTIDD 125
SA++RI+DKLRSLG +E + PE A + GEIF+P P ++P++RVG T+D
Sbjct: 44 SALRRISDKLRSLGYLEADHPEAAPGPAAPEAGAGASPGEIFVPTPAQLPRHRVGSTLDP 103
Query: 126 SWSTPENPVPVPGTGAAIVRYNQLNKEVGRQKWLAKNSKMNEKEKEVPTLAELKLSGKEL 185
SW+T G G + + P+ AEL L EL
Sbjct: 104 SWAT--------GDGEGAAASRRRR---------RGGRDSSAAASAPPSAAELALPRDEL 146
Query: 186 RRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRTHDSLER 245
RRL+ GI LR +LK+GKAG+TEGIVNGIHERWR+AE+VKI C+D+ +NMKRTH+ LER
Sbjct: 147 RRLQGAGIRLRNRLKVGKAGVTEGIVNGIHERWRNAELVKIRCDDVSAMNMKRTHEILER 206
Query: 246 KTGGLVVWRSGSKIILYRGADYKYPYFL-------ADESSTDGASSD---DLP----NQL 291
KTGGLV+WRSGS IILYRG DYKYPYF DESS +S D DL Q
Sbjct: 207 KTGGLVIWRSGSTIILYRGTDYKYPYFQDREMKNDMDESSEHTSSDDEDADLAIIASEQS 266
Query: 292 VDDEGLDETKTHSS-------------GAD---------SAKPSGQSPT----------- 318
+E D H S G D SA+ S S T
Sbjct: 267 GSEEDSDNPAEHGSNHTEEGDDLTRRFGVDALEGNLDIGSAEQSINSATKDQQAILHTST 326
Query: 319 --------NKKVQQTLIHSVGSPDKLRYQLPGEAELVEEADRLLDGLGPRFTDWWGYDPQ 370
+ + + TL+ VGSP+K R QLPGE +L EEAD+LLDGLGPRF+DWWGYDP
Sbjct: 327 NVSRPSEISGRARSTLVAGVGSPNKFRLQLPGEVKLAEEADKLLDGLGPRFSDWWGYDPL 386
Query: 371 PVDADLLPATVPGYRRPFRLLPYGVQPKLTNDEMTTLRRLGRPLPCHFALGRNRNLQGLA 430
PVDADLLPA VPGYRRPFRLLP GV P+LT+ EMT LRRL RPLP H+ALGR+ NLQGLA
Sbjct: 387 PVDADLLPAIVPGYRRPFRLLPSGVPPRLTDREMTILRRLARPLPYHYALGRSSNLQGLA 446
Query: 431 AAIVKLWEKCEIAKIAVKRGAQNTNSEMMAQELKRLTGGTLLSRDREFIVFYRGKDFLPP 490
A+++KLWE+CE+AK+A+KRGA+N +S++++++LK LTGGTLLSRD E IVFYRGKDFLP
Sbjct: 447 ASMIKLWERCEVAKVAIKRGAENIDSDLISEKLKGLTGGTLLSRDNESIVFYRGKDFLPT 506
Query: 491 AASSAIEERRKHEFSTS-----NDSKEEPELGNRHDNSGDNTQDEFGCTNDQKSTMHSEQ 545
A S AIE+RRK+ ST N K P+ ++ + D + D C ++K +
Sbjct: 507 AVSLAIEKRRKYGNSTISNPKLNFDKSTPQNSSKLKMATDVSLDGHECY-EKKHKDETAV 565
Query: 546 KERRSAEVAIRRTNI--RLSRVLEKKAEAEKLLAELEEERPEQYEVDKEGITEEERYMLR 603
+ R+ + + N+ RLS+ + +K + EKL+ ELE +E I+EEERYMLR
Sbjct: 566 SDNRAESLNVFTQNVEARLSQAIAEKEKTEKLIEELEMSSEPSRAETREVISEEERYMLR 625
Query: 604 KVGLRMKAFLLMGRRGVFDGTVENMHLHWKHRELVKIISKQRKIEAALQEARTLEVESGG 663
KVGL+MK+FLL+GRRGVFDGTVENMHLHWK+RELVKII K+ I+ ARTLE ESGG
Sbjct: 626 KVGLKMKSFLLLGRRGVFDGTVENMHLHWKYRELVKIICKEHNIKDVEYAARTLEAESGG 685
Query: 664 ILVAVERVNKGYAIILYRGKNYERPACLRPKTLLTKREAMKRSLEAQRRQSLKLHVLELT 723
ILVAVERV+K +AII+YRGKNY+RP+ LRPK+LL K++A+KRS+E QR +SLKLHVL L+
Sbjct: 686 ILVAVERVSKAHAIIIYRGKNYQRPSTLRPKSLLNKKDALKRSVEYQRYKSLKLHVLNLS 745
Query: 724 RNIEKLKLQLV 734
+NI+ LK Q+
Sbjct: 746 KNIDYLKDQMF 756
>gi|357167767|ref|XP_003581323.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
chloroplastic-like [Brachypodium distachyon]
Length = 1053
Score = 656 bits (1693), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 376/761 (49%), Positives = 489/761 (64%), Gaps = 82/761 (10%)
Query: 322 VQQTLIHSVGSPDKLRYQLPGEAELVEEADRLLDGLGPRFTDWWGYDPQPVDADLLPATV 381
+ TL+ VGSP+K R QLPGE ++ +E D+LLDGLGPRF+ WWGYDP PVDADLLPA V
Sbjct: 365 ARSTLVIGVGSPNKFRLQLPGEVKVADEGDKLLDGLGPRFSGWWGYDPLPVDADLLPAIV 424
Query: 382 PGYRRPFRLLPYGVQPKLTNDEMTTLRRLGRPLPCHFALGRNRNLQGLAAAIVKLWEKCE 441
PG+RRPFRLLP GV KLT+ EMT LRRL RPLP H+ALGR+ NLQGLA +++KLWE+CE
Sbjct: 425 PGFRRPFRLLPSGVPSKLTDREMTILRRLARPLPYHYALGRSSNLQGLAVSMIKLWERCE 484
Query: 442 IAKIAVKRGAQNTNSEMMAQELKRLTGGTLLSRDREFIVFYRGKDFLPPAASSAIEERRK 501
+AKIA+KRGA +SE++++ELK LTGGTLLSRD + IVFYRGKDFL PA S AIE+RRK
Sbjct: 485 VAKIAIKRGAYCIDSELVSEELKGLTGGTLLSRDNKSIVFYRGKDFLSPAVSLAIEKRRK 544
Query: 502 HEFSTSNDSKEEPELGNRHDNSGDNTQD--EFGCTNDQKSTMHSEQKERRSAEVAI---- 555
H ST+ K E E +TQD E T+D H +E+ E ++
Sbjct: 545 HSNSTTGKLKPETE-------ESTSTQDASELKMTSDASVNGHECHEEKNEGETSLNTVA 597
Query: 556 RRTNIRLSRVLEKKAEAEKLLAELEE-ERPEQYEVDKEGITEEERYMLRKVGLRMKAFLL 614
+ IRLS+ + +K +AEKLL ELE+ +P + E +E I++EERYMLRK+GL+MK FLL
Sbjct: 598 QNVEIRLSQAIVEKEKAEKLLEELEKASQPSKAET-REHISDEERYMLRKIGLQMKPFLL 656
Query: 615 MGRRGVFDGTVENMHLHWKHRELVKIISKQRKIEAALQEARTLEVESGGILVAVERVNKG 674
+GRRGVFDGT+ENMHLHWK+RELVKII K+ ++ ARTLE +SGGILVAVERV+KG
Sbjct: 657 LGRRGVFDGTIENMHLHWKYRELVKIICKEHSMKDVEYAARTLESQSGGILVAVERVSKG 716
Query: 675 YAIILYRGKNYERPACLRPKTLLTKREAMKRSLEAQRRQSLKLHVLELTRNIEKLKLQLV 734
+AII+YRGKNY RP+ LRPK+LL KR+A+KRS+E QR++SLKLHVL L++NI+ L+ Q+V
Sbjct: 717 HAIIMYRGKNYHRPSTLRPKSLLNKRDALKRSVEYQRQKSLKLHVLNLSKNIDYLRGQMV 776
Query: 735 KDKEANSLETIDESILPLVKEEIGDMQPAECMRSDTSHEVNVQARGECGADLTSTESNDT 794
N + I D+ + + S EV + G D TS+ ++ T
Sbjct: 777 SFIHEN--------------KGINDLSNSSGTLEEKSEEVAPEGFDSEGQDSTSSGTDGT 822
Query: 795 GDATIDGPPAIQQDKQTESLTHNGISINEIESKSSLKSVSKESQLNMIADFFAEGVASGT 854
+ T G P D+Q N + N+ + SS S LN +S T
Sbjct: 823 LNLTKSGVPL--DDRQ------NKLCFNKHKDDSSEAS---RPCLNE---------SSST 862
Query: 855 SSCPDNSMQEVMEY-NTIVDAEQCSSDNEPRESSIESAKSRSSENEPIEQSFELAKGRSG 913
S D +++Y N + A C SDN ++E + E+ K
Sbjct: 863 VSSND-----LIKYQNRLSSAIACHSDN---------------DSESYSRDVEIVKPCQA 902
Query: 914 LSTPIGTGNVWNENNSRAIQLSNRDRLLLRKQALRMKKRPVLAVGRSNIVTGVAKAIKAH 973
L P R LSNR+RL+LRKQAL+MKKRPVLA+GR+N++TGVAK I+ H
Sbjct: 903 LDEPKLDEKCTPYLPFRTAPLSNRERLMLRKQALKMKKRPVLAIGRNNVITGVAKTIQTH 962
Query: 974 FEKYPLAIVNVKGRAKGTSVQEVVAKLEEATGAVLVSQEPSKVILYRGWGAE--DESSPR 1031
F+K+PLAIVN+K RA GT VQ+++++LE ATG+VLVS+EP+KVILYRGWGAE +SS
Sbjct: 963 FKKHPLAIVNIKNRADGTPVQQLISELERATGSVLVSREPNKVILYRGWGAEVTQKSSKE 1022
Query: 1032 GRQNSRAKPSIVRDVRPWPAVSRELLAAIKLECGLQGQQEQ 1072
N K +S +LL AI+LECGL + Q
Sbjct: 1023 NSTNEVEK----------EVISPQLLEAIRLECGLHSDESQ 1053
Score = 201 bits (512), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 119/251 (47%), Positives = 160/251 (63%), Gaps = 44/251 (17%)
Query: 66 SAIQRIADKLRSLGIVEQTTSKDDTLNPEPETRATD--NAGEIFIPLPHRIPKYRVGHTI 123
SA++RI+DKLRSLG +E T+S+ T P P T+++D + GEIF+P P+++P++RVG T+
Sbjct: 48 SALRRISDKLRSLGYLE-TSSEAST--PAP-TQSSDAPSPGEIFVPTPNQLPRHRVGSTL 103
Query: 124 DDSWSTPENPVPVPGTGAAIVRYNQLNKEVGRQKWLAKNSKMNEKEKEVPT---LAELKL 180
D SW+T G G A A+ + ++ VP+ AEL L
Sbjct: 104 DPSWAT--------GDGEADT---------------ARRRRRGGRDAAVPSPPSAAELTL 140
Query: 181 SGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRTH 240
ELRRL+ +GI LRK+LK+GK G+TEGIVNGIHERWR+ E+VKI C+D+ +NM+RTH
Sbjct: 141 PRDELRRLQGVGIRLRKRLKVGKPGVTEGIVNGIHERWRNVELVKIRCDDVSAMNMRRTH 200
Query: 241 DSLERKTGGLVVWRSGSKIILYRGADYKYPYFLADES-STDG-----------ASSDDLP 288
+ LERKTGGLV+WRSGS IILYRG +YKYPYF +S S DG +S +D
Sbjct: 201 EILERKTGGLVIWRSGSTIILYRGTNYKYPYFHDQKSNSEDGKDLGIASVQQSSSEEDAE 260
Query: 289 NQLVDDEGLDE 299
N D L+E
Sbjct: 261 NHASHDSTLEE 271
Score = 65.1 bits (157), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 63/107 (58%), Gaps = 6/107 (5%)
Query: 173 PTLAELK--LSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCED 230
P+ AE + +S +E LR +G+ ++ L +G+ G+ +G + +H W++ E+VKI+C++
Sbjct: 627 PSKAETREHISDEERYMLRKIGLQMKPFLLLGRRGVFDGTIENMHLHWKYRELVKIICKE 686
Query: 231 LCRLNMKRTHDSLERKTGGLVVW----RSGSKIILYRGADYKYPYFL 273
+++ +LE ++GG++V G II+YRG +Y P L
Sbjct: 687 HSMKDVEYAARTLESQSGGILVAVERVSKGHAIIMYRGKNYHRPSTL 733
Score = 56.2 bits (134), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 48/87 (55%), Gaps = 4/87 (4%)
Query: 602 LRKVGLRMKAFLLMGRRGVFDGTVENMHLHWKHRELVKIISKQRKIEAALQEARTLEVES 661
L+ VG+R++ L +G+ GV +G V +H W++ ELVKI + LE ++
Sbjct: 148 LQGVGIRLRKRLKVGKPGVTEGIVNGIHERWRNVELVKIRCDDVSAMNMRRTHEILERKT 207
Query: 662 GGILVAVERVNKGYAIILYRGKNYERP 688
GG+++ G IILYRG NY+ P
Sbjct: 208 GGLVIW----RSGSTIILYRGTNYKYP 230
Score = 42.7 bits (99), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 49/101 (48%), Gaps = 3/101 (2%)
Query: 172 VPTLAELKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCE-- 229
+P+ KL+ +E+ LR L L +G++ +G+ + + W EV KI +
Sbjct: 434 LPSGVPSKLTDREMTILRRLARPLPYHYALGRSSNLQGLAVSMIKLWERCEVAKIAIKRG 493
Query: 230 DLCRLNMKRTHDSLERKTGGLVVWRSGSKIILYRGADYKYP 270
C ++ + + L+ TGG ++ R I+ YRG D+ P
Sbjct: 494 AYC-IDSELVSEELKGLTGGTLLSRDNKSIVFYRGKDFLSP 533
Score = 42.0 bits (97), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 67/162 (41%), Gaps = 8/162 (4%)
Query: 392 PYGVQPKLTNDEMTTLRRLGRPLPCHFALGRNRNLQGLAAAIVKLWEKCEIAKIAVKRGA 451
P + L DE+ L+ +G L +G+ +G+ I + W E+ KI
Sbjct: 133 PSAAELTLPRDELRRLQGVGIRLRKRLKVGKPGVTEGIVNGIHERWRNVELVKIRCD-DV 191
Query: 452 QNTNSEMMAQELKRLTGGTLLSRDREFIVFYRGKDFLPPA---ASSAIEERRKHEFSTSN 508
N + L+R TGG ++ R I+ YRG ++ P S E+ + ++
Sbjct: 192 SAMNMRRTHEILERKTGGLVIWRSGSTIILYRGTNYKYPYFHDQKSNSEDGKDLGIASVQ 251
Query: 509 DSKEEPELGNR--HDNS--GDNTQDEFGCTNDQKSTMHSEQK 546
S E + N HD++ D D FG ++ T+ E K
Sbjct: 252 QSSSEEDAENHASHDSTLEEDEEDDSFGIVYGEQRTIAEEDK 293
>gi|326497411|dbj|BAK05795.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 1070
Score = 648 bits (1671), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 384/775 (49%), Positives = 486/775 (62%), Gaps = 105/775 (13%)
Query: 323 QQTLIHSVGSPDKLRYQLPGEAELVEEADRLLDGLGPRFTDWWGYDPQPVDADLLPATVP 382
+ TL+ VGSP+K R QLPGE +L +E D+LLDGLGPRF++WWGYDP PVDADLLPA VP
Sbjct: 376 RSTLVTGVGSPNKFRLQLPGEVKLAKEDDKLLDGLGPRFSEWWGYDPLPVDADLLPAIVP 435
Query: 383 GYRRPFRLLPYGVQPKLTNDEMTTLRRLGRPLPCHFALGRNRNLQGLAAAIVKLWEKCEI 442
G+RRPFRLLP GV PKLT+ EMT LRRL RPLP H+ALGR+ NLQGLAA+I+KLWE+CE+
Sbjct: 436 GFRRPFRLLPSGVPPKLTDREMTILRRLARPLPYHYALGRSSNLQGLAASIIKLWERCEV 495
Query: 443 AKIAVKRGAQNTNSEMMAQELKRLTGGTLLSRDREFIVFYRGKDFLPPAASSAIEERRKH 502
AKIA+KRG +SE++++ELK LTGGTLLSRD E IV YRGKDFLP A S AIE+RRKH
Sbjct: 496 AKIAMKRGPYCIDSELVSEELKGLTGGTLLSRDNESIVLYRGKDFLPQAVSLAIEKRRKH 555
Query: 503 EFSTSNDSKEEPELGNRHDNSGDNTQD--EFGCTNDQKSTMHSEQKERRSAEVAIRRT-- 558
+ S N K E E TQD E ND +++H + V+ RT
Sbjct: 556 DNSMINKPKPEIE-------ESIPTQDASELKIAND--ASVHGHECHEGETSVSEYRTES 606
Query: 559 --------NIRLSRVLEKKAEAEKLLAELEEERPEQYEVDKEGITEEERYMLRKVGLRMK 610
RLS+ L +K +AEKLL ELE+ +E I+EEERYMLRKVGL+MK
Sbjct: 607 LNTVAQNMETRLSQALTEKEKAEKLLEELEKASRSSKAETREVISEEERYMLRKVGLQMK 666
Query: 611 AFLLMGRRGVFDGTVENMHLHWKHRELVKIISKQRKIEAALQEARTLEVESGGILVAVER 670
FLL+GRRGVFDGT+ENMHLHWK+RELVKII K+ +E ARTLE ESGGILVAVER
Sbjct: 667 PFLLLGRRGVFDGTIENMHLHWKYRELVKIICKEHSMEDVTYAARTLEAESGGILVAVER 726
Query: 671 VNKGYAIILYRGKNYERPACLRPKTLLTKREAMKRSLEAQRRQSLKLHVLELTRNIEKLK 730
V+KG+AII+YRGKNY+RP+ LRPK+LL K++A+KRS+E QRR+SLKLHVL L++NI+ L+
Sbjct: 727 VSKGHAIIMYRGKNYQRPSSLRPKSLLNKKDALKRSVELQRRKSLKLHVLNLSKNIDYLR 786
Query: 731 LQLVK------------DKEANSLETIDESILPLVKEEIGDMQPAECMRSDTSHEVNVQA 778
QL+ D S ET E +P V E + + EC T+ +N +
Sbjct: 787 GQLMNSGHENKGMHDLCDNSRTSGETSKE--VPEVAPECFEPEGEECSSGGTNGILNTSS 844
Query: 779 RGECGADLTSTESNDTGDATIDGPPAIQQDKQTESLTHNGISINEIESKSSLKSVSKESQ 838
G D T N + +N ++ SS VS+ S
Sbjct: 845 SGVWLDD-----------------------------TQNKLCLNGLKDHSS--EVSR-SC 872
Query: 839 LNMIADFFAEGVASGTSSCPDNSMQEVMEY-NTIVDAEQCSSDNEPRESSIESAKSRSSE 897
LN EG + +S DN +EY N + C SDN E S
Sbjct: 873 LN-------EGSNTASS---DNQ----IEYQNRLSFPVACHSDNGSEEDS---------- 908
Query: 898 NEPIEQSFELAKGRSGLSTPIGTGNVWNENNSRAIQLSNRDRLLLRKQALRMKKRPVLAV 957
+ + L PI S+A LSNR+RL+LRKQAL+MKKRPVLA+
Sbjct: 909 -----KILKTLGPSQALEEPILDQKHTPRLPSKAAPLSNRERLVLRKQALQMKKRPVLAI 963
Query: 958 GRSNIVTGVAKAIKAHFEKYPLAIVNVKGRAKGTSVQEVVAKLEEATGAVLVSQEPSKVI 1017
GR+N++TGVAK I+ HF+K+PLA+VN+K RA GT VQ+++++LEEATG+VLVS+EP+KVI
Sbjct: 964 GRNNVITGVAKTIRTHFKKHPLAVVNIKNRADGTPVQQLISELEEATGSVLVSREPNKVI 1023
Query: 1018 LYRGWGAEDESSPRGRQNSRAKPSIVRDVRPWPAVSRELLAAIKLECGLQGQQEQ 1072
LYRGWGA D + R++S V +S +LL AI+LECGL + Q
Sbjct: 1024 LYRGWGA-DATQTSSREDSTY-------VGEKEVISPQLLEAIRLECGLHPGESQ 1070
Score = 191 bits (484), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 104/208 (50%), Positives = 136/208 (65%), Gaps = 21/208 (10%)
Query: 66 SAIQRIADKLRSLGIVEQTTSKD-DTLNPEPETRATDNAGEIFIPLPHRIPKYRVGHTID 124
SA++RI+DKLRSLG +E + L +P A + GEIF+P P ++P++RVG T+D
Sbjct: 47 SALRRISDKLRSLGYLETSPEVPIPALAQDPRADAP-SPGEIFVPTPAQLPRHRVGSTLD 105
Query: 125 DSWSTPENPVPVPGTGAAIVRYNQLNKEVGRQKWLAKNSKMNEKEKEVPTLAELKLSGKE 184
SW+T G G E + + + P+ AEL L E
Sbjct: 106 PSWAT--------GDG-----------EADAARRRQRRGRDAAAAPTPPSAAELTLPRDE 146
Query: 185 LRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRTHDSLE 244
LRRL+ +GI LRK+LK+GK G+TEGIVNGIHERWR+AE+VKI C+D+ +NM+RTH+ LE
Sbjct: 147 LRRLQGVGIRLRKRLKVGKPGVTEGIVNGIHERWRNAELVKIRCDDISAMNMRRTHEVLE 206
Query: 245 RKTGGLVVWRSGSKIILYRGADYKYPYF 272
RKTGGLV+WRSGS IILYRG +YKYPYF
Sbjct: 207 RKTGGLVIWRSGSTIILYRGTNYKYPYF 234
Score = 62.8 bits (151), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 69/130 (53%), Gaps = 17/130 (13%)
Query: 165 MNEKEKEVPTLAELK-------------LSGKELRRLRTLGIGLRKKLKIGKAGITEGIV 211
+ EKEK L EL+ +S +E LR +G+ ++ L +G+ G+ +G +
Sbjct: 622 LTEKEKAEKLLEELEKASRSSKAETREVISEEERYMLRKVGLQMKPFLLLGRRGVFDGTI 681
Query: 212 NGIHERWRHAEVVKIVCEDLCRLNMKRTHDSLERKTGGLVVW----RSGSKIILYRGADY 267
+H W++ E+VKI+C++ ++ +LE ++GG++V G II+YRG +Y
Sbjct: 682 ENMHLHWKYRELVKIICKEHSMEDVTYAARTLEAESGGILVAVERVSKGHAIIMYRGKNY 741
Query: 268 KYPYFLADES 277
+ P L +S
Sbjct: 742 QRPSSLRPKS 751
Score = 56.2 bits (134), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 48/87 (55%), Gaps = 4/87 (4%)
Query: 602 LRKVGLRMKAFLLMGRRGVFDGTVENMHLHWKHRELVKIISKQRKIEAALQEARTLEVES 661
L+ VG+R++ L +G+ GV +G V +H W++ ELVKI + LE ++
Sbjct: 150 LQGVGIRLRKRLKVGKPGVTEGIVNGIHERWRNAELVKIRCDDISAMNMRRTHEVLERKT 209
Query: 662 GGILVAVERVNKGYAIILYRGKNYERP 688
GG+++ G IILYRG NY+ P
Sbjct: 210 GGLVIW----RSGSTIILYRGTNYKYP 232
Score = 43.9 bits (102), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 49/98 (50%), Gaps = 3/98 (3%)
Query: 172 VPTLAELKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCE-- 229
+P+ KL+ +E+ LR L L +G++ +G+ I + W EV KI +
Sbjct: 444 LPSGVPPKLTDREMTILRRLARPLPYHYALGRSSNLQGLAASIIKLWERCEVAKIAMKRG 503
Query: 230 DLCRLNMKRTHDSLERKTGGLVVWRSGSKIILYRGADY 267
C ++ + + L+ TGG ++ R I+LYRG D+
Sbjct: 504 PYC-IDSELVSEELKGLTGGTLLSRDNESIVLYRGKDF 540
>gi|413918579|gb|AFW58511.1| CFM2 [Zea mays]
Length = 1039
Score = 636 bits (1641), Expect = e-179, Method: Compositional matrix adjust.
Identities = 363/748 (48%), Positives = 482/748 (64%), Gaps = 75/748 (10%)
Query: 323 QQTLIHSVGSPDKLRYQLPGEAELVEEADRLLDGLGPRFTDWWGYDPQPVDADLLPATVP 382
+ +L+ VGS +K R QLPGE +L EEAD+LLDGLGPRF+ WWGYDP PVDADLLPA VP
Sbjct: 357 RSSLVAGVGSQNKFRLQLPGEVKLAEEADKLLDGLGPRFSGWWGYDPVPVDADLLPAIVP 416
Query: 383 GYRRPFRLLPYGVQPKLTNDEMTTLRRLGRPLPCHFALGRNRNLQGLAAAIVKLWEKCEI 442
GYRRPFRLLP GV PKLT+ EMT LRRL LP H+ALGR+ NLQGLAA+++KLWE+CE+
Sbjct: 417 GYRRPFRLLPSGVPPKLTDREMTILRRLAHALPFHYALGRSSNLQGLAASMIKLWERCEV 476
Query: 443 AKIAVKRGAQNTNSEMMAQELKRLTGGTLLSRDREFIVFYRGKDFLPPAASSAIEERRKH 502
AKIA+KR A NT+SE++ +E+K LTGGTLLSRD+E IVFYRGKDFLPPA S AIE+RRK
Sbjct: 477 AKIALKRDAHNTDSELITEEVKELTGGTLLSRDKESIVFYRGKDFLPPAVSLAIEKRRKL 536
Query: 503 EFSTSNDSKE--EPELGNRHDNSGDNTQDEFGCTNDQKSTMHSEQKERRSAEVAIRRTNI 560
ST +K E + ++D+ + D ++ +++ + E S +
Sbjct: 537 GSSTIYKAKPGIEESMPTQNDSVLKVSSDVSVHVREEGTSVTENRAE--SLNTVAKDVET 594
Query: 561 RLSRVLEKKAEAEKLLAELEEERPEQYEVDKEGITEEERYMLRKVGLRMKAFLLMGRRGV 620
RLS+ + +KA+AEKL+ ELE+ P +E I+E+ERYMLRKVGL+MK FLL+GRRGV
Sbjct: 595 RLSQAIAEKAKAEKLIEELEKASPLSKAEVRETISEDERYMLRKVGLKMKQFLLLGRRGV 654
Query: 621 FDGTVENMHLHWKHRELVKIISKQRKIEAALQEARTLEVESGGILVAVERVNKGYAIILY 680
FDGT+ENMHLHWK+RELVKII K+ ++E ARTLE ESGGILVAVE+V+KG+AII+Y
Sbjct: 655 FDGTIENMHLHWKYRELVKIICKEHRLEDVEYAARTLEAESGGILVAVEKVSKGHAIIVY 714
Query: 681 RGKNYERPACLRPKTLLTKREAMKRSLEAQRRQSLKLHVLELTRNIEKLKLQLVKDKEAN 740
RGKNY+RP+ LRPKTLL+KR+A+KRSLE QR +SLK+HVL+L++NI+ L+ Q+
Sbjct: 715 RGKNYKRPSKLRPKTLLSKRDALKRSLENQRCKSLKVHVLKLSKNIDYLRDQMNSSYYHK 774
Query: 741 SLE--TIDESILPLVKEEIGDMQPAECMRSDTSHEVNVQARGECGADLTSTESNDTGDAT 798
+ +++ L EE+ ++ P S E V+ TS E + D T
Sbjct: 775 DMHDPSVNSVTLQQQDEEMPEVAP-------MSSEPEVE-------KWTSVEIDRALDLT 820
Query: 799 IDGPPAIQQDKQTESLTHNGISINEIESKSSLKSVSKESQLNMIADFFAEGVASGTSSCP 858
G P +D Q++ + N++E SS + C
Sbjct: 821 KSGVPV--EDMQSK------VCFNKLEDDSS----------------------ATAGPCL 850
Query: 859 DNSMQEVMEYNTIVDAEQCSSDNEPRESSIESAKSRSSENEPIEQSFELAKGRSGLSTPI 918
S YN I Q R S++ S+ E P + + P
Sbjct: 851 TGSSIAASSYNLIRHQNQ-------RSSTVTSSPDGRYEGAPSKV----------VDAPK 893
Query: 919 GTGNVWNENNSRAIQLSNRDRLLLRKQALRMKKRPVLAVGRSNIVTGVAKAIKAHFEKYP 978
+ + RA LSN++RL+LRKQAL+MKKRPVL++GR+N +TGVAK IK HF+K+P
Sbjct: 894 LDAESLSVSPLRAAPLSNQERLVLRKQALQMKKRPVLSIGRNNAITGVAKTIKTHFKKHP 953
Query: 979 LAIVNVKGRAKGTSVQEVVAKLEEATGAVLVSQEPSKVILYRGWGAEDESSPRGRQNSRA 1038
LAIVN+K RA GT +Q+++++LEEATG+VLVS+E +KVILYRGWGAE +++SR
Sbjct: 954 LAIVNIKNRADGTPIQQLISELEEATGSVLVSRETNKVILYRGWGAE-----VAQKSSRE 1008
Query: 1039 KPSIVRDVRPWPAVSRELLAAIKLECGL 1066
+ D +S +LL AI+LECGL
Sbjct: 1009 SST---DEGEKEVISPQLLEAIRLECGL 1033
Score = 203 bits (517), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 126/266 (47%), Positives = 162/266 (60%), Gaps = 30/266 (11%)
Query: 66 SAIQRIADKLRSLGIVEQTTSKDDTLNPEPETRATDNAGEIFIPLPHRIPKYRVGHTIDD 125
SA++RI+DKLRSLG +E T S+ T P A + GEIF+P P ++P++RVG T+D
Sbjct: 47 SALRRISDKLRSLGYLE-TVSEPPTPAPNKSGDAP-SPGEIFVPTPAQLPRHRVGSTLDP 104
Query: 126 SWSTPENPVPVPGTGAAIVRYNQLNKEVGRQKWLAKNSKMNEKEKEVPTLAELKLSGKEL 185
SW+T G G A RQ+ + + P+ AEL L EL
Sbjct: 105 SWAT--------GDGEA--------SSTSRQRRRGRGRDASGSPSAPPSAAELALPRDEL 148
Query: 186 RRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRTHDSLER 245
RRL+ +GI +RK+LK+GKAGITEGIVNGIHERWR+AEVVK+ CED+ +NM+RTH+ LER
Sbjct: 149 RRLQGIGIRVRKRLKVGKAGITEGIVNGIHERWRNAEVVKLRCEDVWAMNMRRTHEILER 208
Query: 246 KTGGLVVWRSGSKIILYRGADYKYPYFLADE---SSTDGASSDDLPNQLVDDEGLDETKT 302
KTGGLV+WRSGS IILYRG +Y YPYF E S D SSD + G DE +T
Sbjct: 209 KTGGLVIWRSGSTIILYRGTNYTYPYFHHSERVDSFLDKESSDQ------SNSG-DEDET 261
Query: 303 HSSGADSAKPSGQSPTNKKVQQTLIH 328
S S + S ++P +Q IH
Sbjct: 262 SSQHGSSHEKSSENPVVACAEQ--IH 285
Score = 63.5 bits (153), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 68/113 (60%), Gaps = 7/113 (6%)
Query: 165 MNEKEKEVP-TLAELK--LSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHA 221
+ E EK P + AE++ +S E LR +G+ +++ L +G+ G+ +G + +H W++
Sbjct: 610 IEELEKASPLSKAEVRETISEDERYMLRKVGLKMKQFLLLGRRGVFDGTIENMHLHWKYR 669
Query: 222 EVVKIVCEDLCRLNMKRTHDSLERKTGGLVVW----RSGSKIILYRGADYKYP 270
E+VKI+C++ +++ +LE ++GG++V G II+YRG +YK P
Sbjct: 670 ELVKIICKEHRLEDVEYAARTLEAESGGILVAVEKVSKGHAIIVYRGKNYKRP 722
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 51/96 (53%), Gaps = 4/96 (4%)
Query: 593 GITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVENMHLHWKHRELVKIISKQRKIEAALQ 652
+ +E L+ +G+R++ L +G+ G+ +G V +H W++ E+VK+ + +
Sbjct: 142 ALPRDELRRLQGIGIRVRKRLKVGKAGITEGIVNGIHERWRNAEVVKLRCEDVWAMNMRR 201
Query: 653 EARTLEVESGGILVAVERVNKGYAIILYRGKNYERP 688
LE ++GG+++ G IILYRG NY P
Sbjct: 202 THEILERKTGGLVIW----RSGSTIILYRGTNYTYP 233
Score = 42.7 bits (99), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 48/100 (48%), Gaps = 1/100 (1%)
Query: 172 VPTLAELKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCE-D 230
+P+ KL+ +E+ LR L L +G++ +G+ + + W EV KI + D
Sbjct: 425 LPSGVPPKLTDREMTILRRLAHALPFHYALGRSSNLQGLAASMIKLWERCEVAKIALKRD 484
Query: 231 LCRLNMKRTHDSLERKTGGLVVWRSGSKIILYRGADYKYP 270
+ + + ++ TGG ++ R I+ YRG D+ P
Sbjct: 485 AHNTDSELITEEVKELTGGTLLSRDKESIVFYRGKDFLPP 524
Score = 41.6 bits (96), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 32/140 (22%), Positives = 63/140 (45%), Gaps = 3/140 (2%)
Query: 392 PYGVQPKLTNDEMTTLRRLGRPLPCHFALGRNRNLQGLAAAIVKLWEKCEIAKIAVKRGA 451
P + L DE+ L+ +G + +G+ +G+ I + W E+ K+ +
Sbjct: 136 PSAAELALPRDELRRLQGIGIRVRKRLKVGKAGITEGIVNGIHERWRNAEVVKLRCE-DV 194
Query: 452 QNTNSEMMAQELKRLTGGTLLSRDREFIVFYRGKDFLPPA--ASSAIEERRKHEFSTSND 509
N + L+R TGG ++ R I+ YRG ++ P S ++ E S ++
Sbjct: 195 WAMNMRRTHEILERKTGGLVIWRSGSTIILYRGTNYTYPYFHHSERVDSFLDKESSDQSN 254
Query: 510 SKEEPELGNRHDNSGDNTQD 529
S +E E ++H +S + + +
Sbjct: 255 SGDEDETSSQHGSSHEKSSE 274
>gi|154986383|gb|ABS89145.1| CFM2 [Zea mays]
Length = 942
Score = 635 bits (1639), Expect = e-179, Method: Compositional matrix adjust.
Identities = 363/748 (48%), Positives = 482/748 (64%), Gaps = 75/748 (10%)
Query: 323 QQTLIHSVGSPDKLRYQLPGEAELVEEADRLLDGLGPRFTDWWGYDPQPVDADLLPATVP 382
+ +L+ VGS +K R QLPGE +L EEAD+LLDGLGPRF+ WWGYDP PVDADLLPA VP
Sbjct: 260 RSSLVAGVGSQNKFRLQLPGEVKLAEEADKLLDGLGPRFSGWWGYDPVPVDADLLPAIVP 319
Query: 383 GYRRPFRLLPYGVQPKLTNDEMTTLRRLGRPLPCHFALGRNRNLQGLAAAIVKLWEKCEI 442
GYRRPFRLLP GV PKLT+ EMT LRRL LP H+ALGR+ NLQGLAA+++KLWE+CE+
Sbjct: 320 GYRRPFRLLPSGVPPKLTDREMTILRRLAHALPFHYALGRSSNLQGLAASMIKLWERCEV 379
Query: 443 AKIAVKRGAQNTNSEMMAQELKRLTGGTLLSRDREFIVFYRGKDFLPPAASSAIEERRKH 502
AKIA+KR A NT+SE++ +E+K LTGGTLLSRD+E IVFYRGKDFLPPA S AIE+RRK
Sbjct: 380 AKIALKRDAHNTDSELITEEVKELTGGTLLSRDKESIVFYRGKDFLPPAVSLAIEKRRKL 439
Query: 503 EFSTSNDSKE--EPELGNRHDNSGDNTQDEFGCTNDQKSTMHSEQKERRSAEVAIRRTNI 560
ST +K E + ++D+ + D ++ +++ + E S +
Sbjct: 440 GSSTIYKAKPGIEESMPTQNDSVLKVSSDVSVHVREEGTSVTENRAE--SLNTVAKDVET 497
Query: 561 RLSRVLEKKAEAEKLLAELEEERPEQYEVDKEGITEEERYMLRKVGLRMKAFLLMGRRGV 620
RLS+ + +KA+AEKL+ ELE+ P +E I+E+ERYMLRKVGL+MK FLL+GRRGV
Sbjct: 498 RLSQAIAEKAKAEKLIEELEKASPLSKAEVRETISEDERYMLRKVGLKMKQFLLLGRRGV 557
Query: 621 FDGTVENMHLHWKHRELVKIISKQRKIEAALQEARTLEVESGGILVAVERVNKGYAIILY 680
FDGT+ENMHLHWK+RELVKII K+ ++E ARTLE ESGGILVAVE+V+KG+AII+Y
Sbjct: 558 FDGTIENMHLHWKYRELVKIICKEHRLEDVEYAARTLEAESGGILVAVEKVSKGHAIIVY 617
Query: 681 RGKNYERPACLRPKTLLTKREAMKRSLEAQRRQSLKLHVLELTRNIEKLKLQLVKDKEAN 740
RGKNY+RP+ LRPKTLL+KR+A+KRSLE QR +SLK+HVL+L++NI+ L+ Q+
Sbjct: 618 RGKNYKRPSKLRPKTLLSKRDALKRSLENQRCKSLKVHVLKLSKNIDYLRDQMNSSYYHK 677
Query: 741 SLE--TIDESILPLVKEEIGDMQPAECMRSDTSHEVNVQARGECGADLTSTESNDTGDAT 798
+ +++ L EE+ ++ P S E V+ TS E + D T
Sbjct: 678 DMHDPSVNSVTLQQQDEEMPEVAP-------MSSEPEVEK-------WTSVEIDRALDLT 723
Query: 799 IDGPPAIQQDKQTESLTHNGISINEIESKSSLKSVSKESQLNMIADFFAEGVASGTSSCP 858
G P +D Q++ + N++E SS + C
Sbjct: 724 KSGVPV--EDMQSK------VCFNKLEDDSS----------------------ATAGPCL 753
Query: 859 DNSMQEVMEYNTIVDAEQCSSDNEPRESSIESAKSRSSENEPIEQSFELAKGRSGLSTPI 918
S YN I Q R S++ S+ E P + + P
Sbjct: 754 TGSSIAASSYNLIRHQNQ-------RSSTVTSSPDGRYEGAPSKV----------VDAPK 796
Query: 919 GTGNVWNENNSRAIQLSNRDRLLLRKQALRMKKRPVLAVGRSNIVTGVAKAIKAHFEKYP 978
+ + RA LSN++RL+LRKQAL+MKKRPVL++GR+N +TGVAK IK HF+K+P
Sbjct: 797 LDAESLSVSPLRAAPLSNQERLVLRKQALQMKKRPVLSIGRNNAITGVAKTIKTHFKKHP 856
Query: 979 LAIVNVKGRAKGTSVQEVVAKLEEATGAVLVSQEPSKVILYRGWGAEDESSPRGRQNSRA 1038
LAIVN+K RA GT +Q+++++LEEATG+VLVS+E +KVILYRGWGAE +++SR
Sbjct: 857 LAIVNIKNRADGTPIQQLISELEEATGSVLVSRETNKVILYRGWGAE-----VAQKSSRE 911
Query: 1039 KPSIVRDVRPWPAVSRELLAAIKLECGL 1066
+ D +S +LL AI+LECGL
Sbjct: 912 SST---DEGEKEVISPQLLEAIRLECGL 936
Score = 164 bits (414), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 89/159 (55%), Positives = 109/159 (68%), Gaps = 12/159 (7%)
Query: 173 PTLAELKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLC 232
P+ AEL L ELRRL+ +GI +RK+LK+GKAGITEGIVNGIHERWR+AEVVK+ CED+
Sbjct: 39 PSAAELALPRDELRRLQGIGIRVRKRLKVGKAGITEGIVNGIHERWRNAEVVKLRCEDVW 98
Query: 233 RLNMKRTHDSLERKTGGLVVWRSGSKIILYRGADYKYPYFLADE---SSTDGASSDDLPN 289
+NM+RTH+ LERKTGGLV+WRSGS IILYRG +Y YPYF E S D SSD
Sbjct: 99 AMNMRRTHEILERKTGGLVIWRSGSTIILYRGTNYTYPYFHHSERVDSFLDKESSDQ--- 155
Query: 290 QLVDDEGLDETKTHSSGADSAKPSGQSPTNKKVQQTLIH 328
+ G DE +T S S + S ++P +Q IH
Sbjct: 156 ---SNSG-DEDETSSQHGSSHEKSSENPVVACAEQ--IH 188
Score = 63.2 bits (152), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 69/116 (59%), Gaps = 7/116 (6%)
Query: 165 MNEKEKEVP-TLAELK--LSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHA 221
+ E EK P + AE++ +S E LR +G+ +++ L +G+ G+ +G + +H W++
Sbjct: 513 IEELEKASPLSKAEVRETISEDERYMLRKVGLKMKQFLLLGRRGVFDGTIENMHLHWKYR 572
Query: 222 EVVKIVCEDLCRLNMKRTHDSLERKTGGLVVW----RSGSKIILYRGADYKYPYFL 273
E+VKI+C++ +++ +LE ++GG++V G II+YRG +YK P L
Sbjct: 573 ELVKIICKEHRLEDVEYAARTLEAESGGILVAVEKVSKGHAIIVYRGKNYKRPSKL 628
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 48/87 (55%), Gaps = 4/87 (4%)
Query: 602 LRKVGLRMKAFLLMGRRGVFDGTVENMHLHWKHRELVKIISKQRKIEAALQEARTLEVES 661
L+ +G+R++ L +G+ G+ +G V +H W++ E+VK+ + + LE ++
Sbjct: 54 LQGIGIRVRKRLKVGKAGITEGIVNGIHERWRNAEVVKLRCEDVWAMNMRRTHEILERKT 113
Query: 662 GGILVAVERVNKGYAIILYRGKNYERP 688
GG+++ G IILYRG NY P
Sbjct: 114 GGLVIW----RSGSTIILYRGTNYTYP 136
Score = 42.0 bits (97), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 48/100 (48%), Gaps = 1/100 (1%)
Query: 172 VPTLAELKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCE-D 230
+P+ KL+ +E+ LR L L +G++ +G+ + + W EV KI + D
Sbjct: 328 LPSGVPPKLTDREMTILRRLAHALPFHYALGRSSNLQGLAASMIKLWERCEVAKIALKRD 387
Query: 231 LCRLNMKRTHDSLERKTGGLVVWRSGSKIILYRGADYKYP 270
+ + + ++ TGG ++ R I+ YRG D+ P
Sbjct: 388 AHNTDSELITEEVKELTGGTLLSRDKESIVFYRGKDFLPP 427
Score = 42.0 bits (97), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 32/140 (22%), Positives = 63/140 (45%), Gaps = 3/140 (2%)
Query: 392 PYGVQPKLTNDEMTTLRRLGRPLPCHFALGRNRNLQGLAAAIVKLWEKCEIAKIAVKRGA 451
P + L DE+ L+ +G + +G+ +G+ I + W E+ K+ +
Sbjct: 39 PSAAELALPRDELRRLQGIGIRVRKRLKVGKAGITEGIVNGIHERWRNAEVVKLRCE-DV 97
Query: 452 QNTNSEMMAQELKRLTGGTLLSRDREFIVFYRGKDFLPPA--ASSAIEERRKHEFSTSND 509
N + L+R TGG ++ R I+ YRG ++ P S ++ E S ++
Sbjct: 98 WAMNMRRTHEILERKTGGLVIWRSGSTIILYRGTNYTYPYFHHSERVDSFLDKESSDQSN 157
Query: 510 SKEEPELGNRHDNSGDNTQD 529
S +E E ++H +S + + +
Sbjct: 158 SGDEDETSSQHGSSHEKSSE 177
>gi|242076096|ref|XP_002447984.1| hypothetical protein SORBIDRAFT_06g019250 [Sorghum bicolor]
gi|241939167|gb|EES12312.1| hypothetical protein SORBIDRAFT_06g019250 [Sorghum bicolor]
Length = 800
Score = 631 bits (1628), Expect = e-178, Method: Compositional matrix adjust.
Identities = 367/752 (48%), Positives = 475/752 (63%), Gaps = 111/752 (14%)
Query: 66 SAIQRIADKLRSLGIVEQTTSKDDTLNPEPETRA-TDNAGEIFIPLPHRIPKYRVGHTID 124
SA++RI++KLRSLG +E + +T P P + GEIF+P P ++P++RVG TID
Sbjct: 48 SALRRISEKLRSLGYLETGS---ETPTPAPNKSGDAPSPGEIFVPTPAQLPRHRVGSTID 104
Query: 125 DSWSTPENPVPVPGTGAAIVRYNQLNKEVGRQKWLAKNSKMNEKEKEVPTLAELKLSGKE 184
SW+T G G A +++ P+ AEL L E
Sbjct: 105 PSWAT--------GDGEA-------GSAARQRRRGRGRDASGSAASAPPSAAELALPRDE 149
Query: 185 LRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRTHDSLE 244
LRRL+ +GI +RK+LK+GKAGITEGIVNGIHERWR+AEVVK+ CED+ +NM+RTH+ LE
Sbjct: 150 LRRLQGIGIRVRKRLKVGKAGITEGIVNGIHERWRNAEVVKLRCEDVWAMNMRRTHEILE 209
Query: 245 RKTGGLVVWRSGSKIILYRGADYKYPYF--------LADESSTDGASSDDLPNQLVDDEG 296
RKTGGLV+WRSGS IILYRG +YKYPYF D+ S+D +SS D +DE
Sbjct: 210 RKTGGLVIWRSGSTIILYRGTNYKYPYFHYSERVDSFLDKESSDLSSSGD------EDEE 263
Query: 297 LDETKTHSSGADSAKPS-------------GQSPTNKKVQQTL------IHSVGSPDKL- 336
+ + H S + + + G+S T + Q+L H + S +L
Sbjct: 264 DETSSQHDSSHEESSENPVVACTEQINAGEGKSQTVGYLNQSLSREKDTTHPISSTKRLV 323
Query: 337 ----------RYQLPGE--AELVEE--ADR-----------LLDGLG------------- 358
R P E A L E ADR L+ G+G
Sbjct: 324 FDTNEGNLDIRTGAPNEQHARLQENTRADRPSKFGPRERSSLVAGVGSPNKFRLQLPGEV 383
Query: 359 --------------PRFTDWWGYDPQPVDADLLPATVPGYRRPFRLLPYGVQPKLTNDEM 404
PRF+ WWGYDP PVDADLLPA VPGYRRPFRLLP GV PKLT+ EM
Sbjct: 384 KLAEEADKLLDGLGPRFSGWWGYDPLPVDADLLPAIVPGYRRPFRLLPSGVPPKLTDREM 443
Query: 405 TTLRRLGRPLPCHFALGRNRNLQGLAAAIVKLWEKCEIAKIAVKRGAQNTNSEMMAQELK 464
T LRRL PLP H+ALGR+ NLQGLAA+++KLWE+CE+AKIA+KR A NT+SE++ +E+K
Sbjct: 444 TILRRLAHPLPFHYALGRSSNLQGLAASMIKLWERCEVAKIALKRDAHNTDSELITEEIK 503
Query: 465 RLTGGTLLSRDREFIVFYRGKDFLPPAASSAIEERRKHEFSTSNDSKEEPELGNR---HD 521
LTGGTLLSRD+E IVFYRGKDFLPPA S AIE+RRK +S K +P++ D
Sbjct: 504 DLTGGTLLSRDKESIVFYRGKDFLPPAVSLAIEKRRK--LGSSTIYKPKPDIEENMPTQD 561
Query: 522 NSGDNTQDEFGCTNDQKSTMHSEQKERRSAEVAIRRTNIRLSRVLEKKAEAEKLLAELEE 581
+S ++ ++ T +E + + VA + RLS+ + +K AEKLL ELE+
Sbjct: 562 DSVLKVSNDVSVHIREEGTSVTEVRAKSLNTVA-KNVEARLSQAIAEKERAEKLLEELEK 620
Query: 582 ERPEQYEVDKEGITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVENMHLHWKHRELVKII 641
P +E I+E+ERYMLRKVGL+MK FLL+GRRGVFDGT+ENMHLHWK+RELVKII
Sbjct: 621 ASPLSKAEVRETISEDERYMLRKVGLKMKQFLLLGRRGVFDGTIENMHLHWKYRELVKII 680
Query: 642 SKQRKIEAALQEARTLEVESGGILVAVERVNKGYAIILYRGKNYERPACLRPKTLLTKRE 701
K+ ++E ARTLE ESGGILVAVE+V+KG+AII+YRGKNY+RP+ LRPKTLL+KR+
Sbjct: 681 CKEHRLEDVEYAARTLEAESGGILVAVEKVSKGHAIIVYRGKNYQRPSKLRPKTLLSKRD 740
Query: 702 AMKRSLEAQRRQSLKLHVLELTRNIEKLKLQL 733
A+KRS+E QR +SLK+HVL+L++NI+ LK Q+
Sbjct: 741 ALKRSVENQRCKSLKVHVLKLSKNIDYLKDQM 772
Score = 41.2 bits (95), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 52/89 (58%), Gaps = 2/89 (2%)
Query: 933 QLSNRDRLLLRKQALRMKKRPVLAVGRSNIVTGVAKAIKAHFEKYPLAIVNVKGRAKGTS 992
+L++R+ +LR+ A + A+GRS+ + G+A ++ +E+ +A + +K A T
Sbjct: 437 KLTDREMTILRRLAHPLPFH--YALGRSSNLQGLAASMIKLWERCEVAKIALKRDAHNTD 494
Query: 993 VQEVVAKLEEATGAVLVSQEPSKVILYRG 1021
+ + ++++ TG L+S++ ++ YRG
Sbjct: 495 SELITEEIKDLTGGTLLSRDKESIVFYRG 523
>gi|21741981|emb|CAD41031.1| OSJNBa0060P14.12 [Oryza sativa Japonica Group]
gi|32492164|emb|CAE04823.1| OSJNBb0048E02.3 [Oryza sativa Japonica Group]
Length = 1012
Score = 605 bits (1559), Expect = e-170, Method: Compositional matrix adjust.
Identities = 353/731 (48%), Positives = 451/731 (61%), Gaps = 118/731 (16%)
Query: 66 SAIQRIADKLRSLGIVEQTTSKDDTLNPEPETRATDNAGEIFIPLPHRIPKYRVGHTIDD 125
SA++RI+DKLRSLG +E + PE A + GEIF+P P ++P++RVG T+D
Sbjct: 44 SALRRISDKLRSLGYLEADHPEAAPGPAAPEAGAGASPGEIFVPTPAQLPRHRVGSTLDP 103
Query: 126 SWSTPENPVPVPGTGAAIVRYNQLNKEVGRQKWLAKNSKMNEKEKEVPTLAELKLSGKEL 185
SW+T G G + + P+ AEL L EL
Sbjct: 104 SWAT--------GDGEGAAASRRRR---------RGGRDSSAAASAPPSAAELALPRDEL 146
Query: 186 RRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRTHDSLER 245
RRL+ GI LR +LK+GKAG+TEGIVNGIHERWR+AE+VKI C+D+ +NMKRTH+ LER
Sbjct: 147 RRLQGAGIRLRNRLKVGKAGVTEGIVNGIHERWRNAELVKIRCDDVSAMNMKRTHEILER 206
Query: 246 KTGGLVVWRSGSKIILYRGADYKYPYFL-------ADESSTDGASSD---DLP----NQL 291
KTGGLV+WRSGS IILYRG DYKYPYF DESS +S D DL Q
Sbjct: 207 KTGGLVIWRSGSTIILYRGTDYKYPYFHDREMKNDMDESSEHTSSDDEDADLAIIASEQS 266
Query: 292 VDDEGLDETKTHSS-------------GAD---------SAKPSGQSPT----------- 318
+E D H S G D SA+ S S T
Sbjct: 267 GSEEDSDNPAEHGSNHTEEGDDLTRRFGVDALEGNLDIGSAEQSINSATKDQQAILHTST 326
Query: 319 --------NKKVQQTLIHSVGSPDKLRYQLPGEAELVEEADRLLDGLGPRFTDWWGYDPQ 370
+ + + TL+ VGSP+K R QLPGE +L EEAD+LLDGLGPRF+DWWGYDP
Sbjct: 327 NVSRPSEISGRARSTLVAGVGSPNKFRLQLPGEVKLAEEADKLLDGLGPRFSDWWGYDPL 386
Query: 371 PVDADLLPATVPGYRRPFRLLPYGVQPKLTNDEMTTLRRLGRPLPCHFALGRNRNLQGLA 430
PVDADLLPA VPGYRR + NLQGLA
Sbjct: 387 PVDADLLPAIVPGYRR------------------------------------SSNLQGLA 410
Query: 431 AAIVKLWEKCEIAKIAVKRGAQNTNSEMMAQELKRLTGGTLLSRDREFIVFYRGKDFLPP 490
A+++KLWE+CE+AK+A+KRGA+N +S++++++LK LTGGTLLSRD E IVFYRGKDFLP
Sbjct: 411 ASMIKLWERCEVAKVAIKRGAENIDSDLISEKLKGLTGGTLLSRDNESIVFYRGKDFLPT 470
Query: 491 AASSAIEERRKHEFSTS-----NDSKEEPELGNRHDNSGDNTQDEFGCTNDQKSTMHSEQ 545
A S AIE+RRK+ ST N K P+ ++ + D + D C ++K +
Sbjct: 471 AVSLAIEKRRKYGNSTISNPKLNFDKSTPQNSSKLKMATDVSLDGHECY-EKKHKDETAV 529
Query: 546 KERRSAEVAIRRTNI--RLSRVLEKKAEAEKLLAELE-EERPEQYEVDKEGITEEERYML 602
+ R+ + + N+ RLS+ + +K + EKL+ ELE P + E +E I+EEERYML
Sbjct: 530 SDNRAESLNVFAQNVEARLSQAIAEKEKTEKLIEELEMSSEPSRAET-REVISEEERYML 588
Query: 603 RKVGLRMKAFLLMGRRGVFDGTVENMHLHWKHRELVKIISKQRKIEAALQEARTLEVESG 662
RKVGL+MK+FLL+GRRGVFDGTVENMHLHWK+RELVKII K+ I+ ARTLE ESG
Sbjct: 589 RKVGLKMKSFLLLGRRGVFDGTVENMHLHWKYRELVKIICKEHNIKDVEYAARTLEAESG 648
Query: 663 GILVAVERVNKGYAIILYRGKNYERPACLRPKTLLTKREAMKRSLEAQRRQSLKLHVLEL 722
GILVAVERV+K +AII+YRGKNY+RP+ LRPK+LL K++A+KRS+E QR +SLKLHVL L
Sbjct: 649 GILVAVERVSKAHAIIIYRGKNYQRPSTLRPKSLLNKKDALKRSVEYQRYKSLKLHVLNL 708
Query: 723 TRNIEKLKLQL 733
++NI+ LK Q+
Sbjct: 709 SKNIDYLKDQM 719
Score = 48.9 bits (115), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 51/99 (51%), Gaps = 9/99 (9%)
Query: 391 LPYGVQPKLTNDEMTTLRRLG-----RPLPCHFALGRNRNLQGLAAAIVKLWEKCEIAKI 445
LP P L+N E LR+ RP+ A+GRN + G+A AI ++K +A +
Sbjct: 874 LPSAAAP-LSNRERLMLRKQALKMKKRPV---LAVGRNNVITGVAKAIKTHFKKHPLAIV 929
Query: 446 AVKRGAQNTNSEMMAQELKRLTGGTLLSRDREFIVFYRG 484
+K A T + + EL+ TG L+SR+ ++ YRG
Sbjct: 930 NIKNRADGTPIQQLISELEEATGSVLVSREPNKVILYRG 968
>gi|297602873|ref|NP_001053020.2| Os04g0464800 [Oryza sativa Japonica Group]
gi|255675534|dbj|BAF14934.2| Os04g0464800 [Oryza sativa Japonica Group]
Length = 1042
Score = 604 bits (1558), Expect = e-170, Method: Compositional matrix adjust.
Identities = 353/731 (48%), Positives = 451/731 (61%), Gaps = 118/731 (16%)
Query: 66 SAIQRIADKLRSLGIVEQTTSKDDTLNPEPETRATDNAGEIFIPLPHRIPKYRVGHTIDD 125
SA++RI+DKLRSLG +E + PE A + GEIF+P P ++P++RVG T+D
Sbjct: 44 SALRRISDKLRSLGYLEADHPEAAPGPAAPEAGAGASPGEIFVPTPAQLPRHRVGSTLDP 103
Query: 126 SWSTPENPVPVPGTGAAIVRYNQLNKEVGRQKWLAKNSKMNEKEKEVPTLAELKLSGKEL 185
SW+T G G + + P+ AEL L EL
Sbjct: 104 SWAT--------GDGEGAAASRRRR---------RGGRDSSAAASAPPSAAELALPRDEL 146
Query: 186 RRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRTHDSLER 245
RRL+ GI LR +LK+GKAG+TEGIVNGIHERWR+AE+VKI C+D+ +NMKRTH+ LER
Sbjct: 147 RRLQGAGIRLRNRLKVGKAGVTEGIVNGIHERWRNAELVKIRCDDVSAMNMKRTHEILER 206
Query: 246 KTGGLVVWRSGSKIILYRGADYKYPYFL-------ADESSTDGASSD---DLP----NQL 291
KTGGLV+WRSGS IILYRG DYKYPYF DESS +S D DL Q
Sbjct: 207 KTGGLVIWRSGSTIILYRGTDYKYPYFHDREMKNDMDESSEHTSSDDEDADLAIIASEQS 266
Query: 292 VDDEGLDETKTHSS-------------GAD---------SAKPSGQSPT----------- 318
+E D H S G D SA+ S S T
Sbjct: 267 GSEEDSDNPAEHGSNHTEEGDDLTRRFGVDALEGNLDIGSAEQSINSATKDQQAILHTST 326
Query: 319 --------NKKVQQTLIHSVGSPDKLRYQLPGEAELVEEADRLLDGLGPRFTDWWGYDPQ 370
+ + + TL+ VGSP+K R QLPGE +L EEAD+LLDGLGPRF+DWWGYDP
Sbjct: 327 NVSRPSEISGRARSTLVAGVGSPNKFRLQLPGEVKLAEEADKLLDGLGPRFSDWWGYDPL 386
Query: 371 PVDADLLPATVPGYRRPFRLLPYGVQPKLTNDEMTTLRRLGRPLPCHFALGRNRNLQGLA 430
PVDADLLPA VPGYRR + NLQGLA
Sbjct: 387 PVDADLLPAIVPGYRR------------------------------------SSNLQGLA 410
Query: 431 AAIVKLWEKCEIAKIAVKRGAQNTNSEMMAQELKRLTGGTLLSRDREFIVFYRGKDFLPP 490
A+++KLWE+CE+AK+A+KRGA+N +S++++++LK LTGGTLLSRD E IVFYRGKDFLP
Sbjct: 411 ASMIKLWERCEVAKVAIKRGAENIDSDLISEKLKGLTGGTLLSRDNESIVFYRGKDFLPT 470
Query: 491 AASSAIEERRKHEFSTS-----NDSKEEPELGNRHDNSGDNTQDEFGCTNDQKSTMHSEQ 545
A S AIE+RRK+ ST N K P+ ++ + D + D C ++K +
Sbjct: 471 AVSLAIEKRRKYGNSTISNPKLNFDKSTPQNSSKLKMATDVSLDGHECY-EKKHKDETAV 529
Query: 546 KERRSAEVAIRRTNI--RLSRVLEKKAEAEKLLAELE-EERPEQYEVDKEGITEEERYML 602
+ R+ + + N+ RLS+ + +K + EKL+ ELE P + E +E I+EEERYML
Sbjct: 530 SDNRAESLNVFAQNVEARLSQAIAEKEKTEKLIEELEMSSEPSRAET-REVISEEERYML 588
Query: 603 RKVGLRMKAFLLMGRRGVFDGTVENMHLHWKHRELVKIISKQRKIEAALQEARTLEVESG 662
RKVGL+MK+FLL+GRRGVFDGTVENMHLHWK+RELVKII K+ I+ ARTLE ESG
Sbjct: 589 RKVGLKMKSFLLLGRRGVFDGTVENMHLHWKYRELVKIICKEHNIKDVEYAARTLEAESG 648
Query: 663 GILVAVERVNKGYAIILYRGKNYERPACLRPKTLLTKREAMKRSLEAQRRQSLKLHVLEL 722
GILVAVERV+K +AII+YRGKNY+RP+ LRPK+LL K++A+KRS+E QR +SLKLHVL L
Sbjct: 649 GILVAVERVSKAHAIIIYRGKNYQRPSTLRPKSLLNKKDALKRSVEYQRYKSLKLHVLNL 708
Query: 723 TRNIEKLKLQL 733
++NI+ LK Q+
Sbjct: 709 SKNIDYLKDQM 719
Score = 48.9 bits (115), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 51/99 (51%), Gaps = 9/99 (9%)
Query: 391 LPYGVQPKLTNDEMTTLRRLG-----RPLPCHFALGRNRNLQGLAAAIVKLWEKCEIAKI 445
LP P L+N E LR+ RP+ A+GRN + G+A AI ++K +A +
Sbjct: 874 LPSAAAP-LSNRERLMLRKQALKMKKRPV---LAVGRNNVITGVAKAIKTHFKKHPLAIV 929
Query: 446 AVKRGAQNTNSEMMAQELKRLTGGTLLSRDREFIVFYRG 484
+K A T + + EL+ TG L+SR+ ++ YRG
Sbjct: 930 NIKNRADGTPIQQLISELEEATGSVLVSREPNKVILYRG 968
>gi|147852955|emb|CAN81271.1| hypothetical protein VITISV_006146 [Vitis vinifera]
Length = 1399
Score = 569 bits (1467), Expect = e-159, Method: Compositional matrix adjust.
Identities = 293/475 (61%), Positives = 351/475 (73%), Gaps = 32/475 (6%)
Query: 2 LLSHYYHNPILLPKTLTNSSSPF------FTFHK------TLSLQNPEKPSIFVISCSKT 49
L+ Y NP+LL TL SPF FT T NP KPS F++ S
Sbjct: 208 LILFYSPNPMLL--TLCRHHSPFPSPTPTFTSSPPSISPSTFKTLNP-KPSKFILRAS-- 262
Query: 50 QNPLTQSETRVQNDTTSAIQRIADKLRSLGIVEQTTSKDDTLNPEPETRATDNAGEIFIP 109
NP Q+ + +AIQRIA+KLRSLG V+ S+ + +P A +AGEIF+P
Sbjct: 263 -NPDAQTLPK------TAIQRIAEKLRSLGYVDGDESRKVLSSDKP---ANGSAGEIFVP 312
Query: 110 LPHRIPKYRVGHTIDDSWSTPENPVPVPGTGAAIVRYNQLNKEVGRQKWLAKNSKMNEKE 169
LP+++PK+RVGHTID SWS PENPVP PGTG I R+++L KEV R+K L + +++
Sbjct: 313 LPNQLPKHRVGHTIDQSWSLPENPVPEPGTGGVITRFHELRKEVKREKKLVR-----KED 367
Query: 170 KEVPTLAELKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCE 229
+ PTLAEL L +ELRRL+ +GI +RKKLK+GKAGITEGIVNGIHERWR AEVVKI CE
Sbjct: 368 ERAPTLAELTLPEEELRRLKGIGIQIRKKLKVGKAGITEGIVNGIHERWRRAEVVKIRCE 427
Query: 230 DLCRLNMKRTHDSLERKTGGLVVWRSGSKIILYRGADYKYPYFLADESSTDGASSDDLPN 289
D+C+LNMKRTHD LERKTGGLV+WRSGS IILYRGA+YKYPYFL+D + + +S D +
Sbjct: 428 DICKLNMKRTHDILERKTGGLVIWRSGSYIILYRGANYKYPYFLSDNNLPNDSSHDASSD 487
Query: 290 QLVDDEGLDETKTHSSGADSAKPSGQSPTNKKVQQTLIHSVGSPDKLRYQLPGEAELVEE 349
+++E D + SSG K +G P NK +LI VG P ++R+QLPGEA+L EE
Sbjct: 488 SQMNNEEHDGKEVCSSGKGDVKSAGPMPANKIAPLSLIQGVGYPTRVRFQLPGEAQLEEE 547
Query: 350 ADRLLDGLGPRFTDWWGYDPQPVDADLLPATVPGYRRPFRLLPYGVQPKLTNDEMTTLRR 409
ADRLLDGLGPRFTDWWGYDP P+DADLLPA VPGYRRPFRLLPYG++PKLTNDEMT LRR
Sbjct: 548 ADRLLDGLGPRFTDWWGYDPLPIDADLLPAVVPGYRRPFRLLPYGLKPKLTNDEMTVLRR 607
Query: 410 LGRPLPCHFALGRNRNLQGLAAAIVKLWEKCEIAKIAVKRGAQNTNSEMMAQELK 464
LGRPLPCHFALGRNR LQGLAA+++KLWEKCEIAKIAVKRG QNTNSEMMA+ELK
Sbjct: 608 LGRPLPCHFALGRNRKLQGLAASMIKLWEKCEIAKIAVKRGVQNTNSEMMAEELK 662
Score = 532 bits (1370), Expect = e-148, Method: Compositional matrix adjust.
Identities = 338/648 (52%), Positives = 413/648 (63%), Gaps = 86/648 (13%)
Query: 441 EIAKIAVKRGAQNTNSEM-MAQELKRLTGGTLLSRDREFIVFYRGKDFLPPAASSAIEER 499
++ + K G+ + S + + +E++ LTGGTLLSRDREFIVFYRGKDFLPPA SSAIE R
Sbjct: 821 DVFWVVRKSGSFSVKSFLSILEEVRNLTGGTLLSRDREFIVFYRGKDFLPPAVSSAIEAR 880
Query: 500 RKHEFSTSND---------SKEEPELGNRHDNSGDNTQDEFGCTNDQKSTMHSEQKERRS 550
RK+ + EE ELG +++ D D T+DQK+ S+++ RS
Sbjct: 881 RKYGIHRGKQKIDHHRLAINAEESELGT-SEHASDKDCD---GTDDQKTNSLSKRRMLRS 936
Query: 551 AEVAIRRTNIRLSRVLEKKAEAEKLLAELEEER-PEQYEVDKEGITEEERYMLRKVGLRM 609
AE + RT+I+LS LEKK AEKLLAELEE + P+Q E+DKEGITEEERYMLRKVGLRM
Sbjct: 937 AEAVVERTSIKLSMALEKKERAEKLLAELEEAQIPQQPEIDKEGITEEERYMLRKVGLRM 996
Query: 610 KAFLLMGRRGVFDGTVENMHLHWKHRELVKIISKQRKIEAALQEARTLEVESGGILVAVE 669
K FLL+GRRG+FDGTVENMHLHWK+RELVKIIS R IE ARTLE ESGGILVAVE
Sbjct: 997 KPFLLLGRRGIFDGTVENMHLHWKYRELVKIISNGRSIEDIHGVARTLEAESGGILVAVE 1056
Query: 670 RVNKGYAIILYRGKNYERPACLRPKTLLTKREAMKRSLEAQRRQSLKLHVLELTRNIEKL 729
RV+KGYAII+YRGKNY+RPA LRP+TLL KREAMKRSLEAQRR E +RN
Sbjct: 1057 RVSKGYAIIMYRGKNYKRPASLRPQTLLNKREAMKRSLEAQRR--------EFSRN---- 1104
Query: 730 KLQLVKDKEANSLETIDESILPLVKEEIGDMQPAECMRSDTSHEVNVQARGECGADLTST 789
KDKE NS + +D+S L L +E GAD+
Sbjct: 1105 -----KDKETNSKQLVDKSRLHLARERY-------------------------GADVILI 1134
Query: 790 ESNDTGDATIDGPPAIQQDKQTESLTHNGISINEIESKSSLKSVSKESQLNMIADFFAEG 849
S+D D++ D DK+ + + +E + S +SV KE + N++ D E
Sbjct: 1135 HSSDGMDSSRDSLQTSHNDKRIDFPSMCDSDTDEANPEPSSESVLKEIETNVLTDMNEE- 1193
Query: 850 VASGTSSCPDNSM-QEVMEYNTIVDAEQCSSDNEPRESSIESAKSRSSENEPIEQSFELA 908
++C D+ + Q IV+ E E ESS++S+K +E +P Q
Sbjct: 1194 --EECATCSDDLVSQGQTSCYAIVNHE------ETMESSVKSSK---NEFKPPVQR---- 1238
Query: 909 KGRSGLSTPIGTGNVWNENNSRAIQLSNRDRLLLRKQALRMKKRPVLAVGRSNIVTGVAK 968
P+ T + NE RA LSNR+RLLLRKQALRMKKRPV+AVGRSNIVTGVAK
Sbjct: 1239 --------PVDTRS--NEMPFRAAPLSNRERLLLRKQALRMKKRPVIAVGRSNIVTGVAK 1288
Query: 969 AIKAHFEKYPLAIVNVKGRAKGTSVQEVVAKLEEATGAVLVSQEPSKVILYRGWGAEDES 1028
IKAHF+K+PLAIVNVKGRAKGTSVQEVV KLE+ATGAVLVSQEPSKVILYRG GA +E+
Sbjct: 1289 TIKAHFQKHPLAIVNVKGRAKGTSVQEVVFKLEQATGAVLVSQEPSKVILYRGCGAREEN 1348
Query: 1029 SPRGRQN--SRAKPSIVRDVRPWPAVSRELLAAIKLECGLQGQQEQEA 1074
R N K S R+ P P VS EL AAI+LECGL+ Q++ A
Sbjct: 1349 GRSDRMNRSDARKTSAGREGGPRPTVSPELRAAIRLECGLKSNQDKGA 1396
Score = 57.8 bits (138), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 60/110 (54%), Gaps = 7/110 (6%)
Query: 168 KEKEVPTLAELKLSG---KELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVV 224
+E ++P E+ G +E LR +G+ ++ L +G+ GI +G V +H W++ E+V
Sbjct: 966 EEAQIPQQPEIDKEGITEEERYMLRKVGLRMKPFLLLGRRGIFDGTVENMHLHWKYRELV 1025
Query: 225 KIVCEDLCRLNMKRTHDSLERKTGGLVV----WRSGSKIILYRGADYKYP 270
KI+ ++ +LE ++GG++V G II+YRG +YK P
Sbjct: 1026 KIISNGRSIEDIHGVARTLEAESGGILVAVERVSKGYAIIMYRGKNYKRP 1075
Score = 57.4 bits (137), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 70/135 (51%), Gaps = 14/135 (10%)
Query: 566 LEKKAEAEKLLAELEEER-PEQYEVDKEGITEEERYMLRKVGLRMKAFLLMGRRGVFDGT 624
L K+ + EK L E+ER P E+ + EEE L+ +G++++ L +G+ G+ +G
Sbjct: 352 LRKEVKREKKLVRKEDERAPTLAELT---LPEEELRRLKGIGIQIRKKLKVGKAGITEGI 408
Query: 625 VENMHLHWKHRELVKIISKQRKIEAALQEART---LEVESGGILVAVERVNKGYAIILYR 681
V +H W+ E+VKI + L RT LE ++GG+++ G IILYR
Sbjct: 409 VNGIHERWRRAEVVKIRCEDI---CKLNMKRTHDILERKTGGLVIW----RSGSYIILYR 461
Query: 682 GKNYERPACLRPKTL 696
G NY+ P L L
Sbjct: 462 GANYKYPYFLSDNNL 476
Score = 41.6 bits (96), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 54/103 (52%), Gaps = 14/103 (13%)
Query: 387 PFRLLPYGVQPKLTNDEMTTLRRLG-----RPLPCHFALGRNRNLQGLAAAIVKLWEKCE 441
PFR P L+N E LR+ RP+ A+GR+ + G+A I ++K
Sbjct: 1248 PFRAAP------LSNRERLLLRKQALRMKKRPV---IAVGRSNIVTGVAKTIKAHFQKHP 1298
Query: 442 IAKIAVKRGAQNTNSEMMAQELKRLTGGTLLSRDREFIVFYRG 484
+A + VK A+ T+ + + +L++ TG L+S++ ++ YRG
Sbjct: 1299 LAIVNVKGRAKGTSVQEVVFKLEQATGAVLVSQEPSKVILYRG 1341
>gi|297734212|emb|CBI15459.3| unnamed protein product [Vitis vinifera]
Length = 830
Score = 499 bits (1284), Expect = e-138, Method: Compositional matrix adjust.
Identities = 296/705 (41%), Positives = 414/705 (58%), Gaps = 80/705 (11%)
Query: 65 TSAIQRIADKLRSLGIVEQTTSKDDTLNPEPETRATDNAGEIFIPLPHRIPKYRVGHTID 124
TSAI+RI +LR+LG+ DD E E + D +P+ ++G +
Sbjct: 115 TSAIERIVLRLRNLGL-----GSDDEDKNEGEVESGDT-----MPV---TGDEKLGDLLQ 161
Query: 125 DSWSTPENP-VPVPGTGAAIVRYNQLNKEVGRQKWLAKNSKMNEKEKEVPTLAELKLSGK 183
W P++ + I+ + + + + + ++ + PTLAEL + +
Sbjct: 162 RDWVRPDSMLIEDEDEDDMILPWERGEERQEEEG----DGRLKRRAVRAPTLAELTIEDE 217
Query: 184 ELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRTHDSL 243
ELRRLR LG+ +R+++ + KAGIT+ ++ IHE+WR E+V++ + +MK H+ +
Sbjct: 218 ELRRLRRLGMTIRERINVPKAGITQAVLGKIHEKWRKEELVRLKFHEALAHDMKTAHEIV 277
Query: 244 ERKTGGLVVWRSGSKIILYRGADYKYPYFLADESSTDGASSDDLPN-QLVDDEGLDETKT 302
ER+TGGLV WRSGS ++++RG +Y+ P P Q VD EG
Sbjct: 278 ERRTGGLVTWRSGSVMVVFRGTNYEGP-----------------PKPQPVDGEGDSLFVP 320
Query: 303 HSSGADSAKPSGQSPTNKKVQQTLIHSVGSPDKLRYQLP------GEAELVEEA--DRLL 354
S D+ P+ ++ N G P + LP E EEA + LL
Sbjct: 321 DVSSVDN--PAMRNDNN-----------GGPTLEKGSLPVRNPVHAENMTEEEAEYNSLL 367
Query: 355 DGLGPRFTDWWGYDPQPVDADLLPATVPGYRRPFRLLPYGVQPKLTNDEMTTLRRLGRPL 414
DGLGPRF DWWG PVD DLLP ++PGY+ P R+LP G++P+LTN EMT LR+L + L
Sbjct: 368 DGLGPRFVDWWGTGVLPVDGDLLPQSIPGYKTPLRILPTGMRPRLTNAEMTNLRKLAKSL 427
Query: 415 PCHFALGRNRNLQGLAAAIVKLWEKCEIAKIAVKRGAQNTNSEMMAQELKRLTGGTLLSR 474
PCHFALGRNRN QGLAAAI+KLWEK + KIAVK G QNTN+++MA+E+K LTGG LL R
Sbjct: 428 PCHFALGRNRNHQGLAAAIIKLWEKSIVVKIAVKPGIQNTNNKLMAEEIKNLTGGVLLLR 487
Query: 475 DREFIVFYRGKDFLPPAASSAIEERR---KH--------------EFSTSNDSKEEPELG 517
++ +IV YRGKDFLP + ++A+ ER KH + D +P G
Sbjct: 488 NKYYIVIYRGKDFLPTSVAAALSEREELTKHIQVVEEKVRTGGAEAIPSGEDGVGQPLAG 547
Query: 518 NRHDNSGDNTQDEFG--CTNDQKSTMHSEQKERRSAEVAIRRTNIRLSRVLEKKAEAEKL 575
+ Q +G + ++ M E +SA V ++R +L+ KK AE+L
Sbjct: 548 TLAEFY--EAQARWGREISAEEHEKMIEEASRAKSARV-VKRIEHKLALAQAKKLRAERL 604
Query: 576 LAELEEER-PEQYEVDKEGITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVENMHLHWKH 634
LA++E P D+E IT+EER+M R++GLRMKA+LL+G RGVFDG +ENMHLHWKH
Sbjct: 605 LAKIEASMIPAGPSDDQETITDEERFMFRRLGLRMKAYLLLGVRGVFDGVIENMHLHWKH 664
Query: 635 RELVKIISKQRKIEAALQEARTLEVESGGILVAVERVNKGYAIILYRGKNYERPACLRPK 694
RELVK+ISKQ+ + AR LE ESGGILVA+ERV KGYA+I YRGKNY RP LRP+
Sbjct: 665 RELVKLISKQKTLAFVEDTARLLEYESGGILVAIERVPKGYALIYYRGKNYRRPVSLRPR 724
Query: 695 TLLTKREAMKRSLEAQRRQSLKLHVLELTRNIEKLKLQLVKDKEA 739
LLTK +A+KRS+ QR ++L H+ EL R IE++K+++ K+A
Sbjct: 725 NLLTKAKALKRSVAMQRHEALSQHISELERTIEQMKMEIGDSKDA 769
>gi|147815878|emb|CAN72582.1| hypothetical protein VITISV_035294 [Vitis vinifera]
Length = 850
Score = 496 bits (1277), Expect = e-137, Method: Compositional matrix adjust.
Identities = 295/705 (41%), Positives = 413/705 (58%), Gaps = 80/705 (11%)
Query: 65 TSAIQRIADKLRSLGIVEQTTSKDDTLNPEPETRATDNAGEIFIPLPHRIPKYRVGHTID 124
TSAI+RI +LR+LG+ DD E E + D +P+ ++G +
Sbjct: 115 TSAIERIVLRLRNLGL-----GSDDEDKNEGEVESGDT-----MPV---TGDEKLGDLLQ 161
Query: 125 DSWSTPENP-VPVPGTGAAIVRYNQLNKEVGRQKWLAKNSKMNEKEKEVPTLAELKLSGK 183
W P++ + I+ + + + + + ++ + PTLAEL + +
Sbjct: 162 RDWVRPDSMLIEDEDEDDMILPWERGEERQEEEG----DGRLKRRAVRAPTLAELTIEDE 217
Query: 184 ELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRTHDSL 243
ELRRLR LG+ +R+++ + KAGIT+ ++ IHE+WR E+V++ + +MK H+ +
Sbjct: 218 ELRRLRRLGMTIRERINVPKAGITQAVLGKIHEKWRKEELVRLKFHEALAHDMKTAHEIV 277
Query: 244 ERKTGGLVVWRSGSKIILYRGADYKYPYFLADESSTDGASSDDLPN-QLVDDEGLDETKT 302
ER+TGGLV WRSGS ++++RG +Y+ P P Q VD EG
Sbjct: 278 ERRTGGLVTWRSGSVMVVFRGTNYEGP-----------------PKPQPVDGEGDSLFVP 320
Query: 303 HSSGADSAKPSGQSPTNKKVQQTLIHSVGSPDKLRYQLP------GEAELVEEA--DRLL 354
S D+ P+ ++ N G P + LP E EEA + LL
Sbjct: 321 DVSSVDN--PAMRNDNN-----------GGPTLEKGSLPVRNPVHAENMTEEEAEYNSLL 367
Query: 355 DGLGPRFTDWWGYDPQPVDADLLPATVPGYRRPFRLLPYGVQPKLTNDEMTTLRRLGRPL 414
DGLGPRF DWWG PVD DLLP ++PGY+ P R+LP G++P+LTN EMT LR+L + L
Sbjct: 368 DGLGPRFVDWWGTGVLPVDGDLLPQSIPGYKTPLRILPTGMRPRLTNAEMTNLRKLAKSL 427
Query: 415 PCHFALGRNRNLQGLAAAIVKLWEKCEIAKIAVKRGAQNTNSEMMAQELKRLTGGTLLSR 474
PCHFALGRNRN QGLAAAI+KLWEK + KIAVK G QNTN+++MA+E+K LTGG LL R
Sbjct: 428 PCHFALGRNRNHQGLAAAIIKLWEKSIVVKIAVKPGIQNTNNKLMAEEIKNLTGGVLLLR 487
Query: 475 DREFIVFYRGKDFLPPAASSAIEERR---KH--------------EFSTSNDSKEEPELG 517
++ +IV YRGKDFLP + ++A+ ER KH + D +P G
Sbjct: 488 NKYYIVIYRGKDFLPTSVAAALSEREELTKHIQVVEEKVRTGGAEAIPSGEDGVGQPLAG 547
Query: 518 NRHDNSGDNTQDEFG--CTNDQKSTMHSEQKERRSAEVAIRRTNIRLSRVLEKKAEAEKL 575
+ Q +G + ++ M E +SA V ++R +L+ KK E+L
Sbjct: 548 TLAEFY--EAQARWGREISAEEHEKMIEEASRAKSARV-VKRIEHKLALAQAKKLRPERL 604
Query: 576 LAELEEER-PEQYEVDKEGITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVENMHLHWKH 634
LA++E P D+E IT+EER+M R++GLRMKA+LL+G RGVFDG +ENMHLHWKH
Sbjct: 605 LAKIEASMIPAGPSDDQETITDEERFMFRRLGLRMKAYLLLGVRGVFDGVIENMHLHWKH 664
Query: 635 RELVKIISKQRKIEAALQEARTLEVESGGILVAVERVNKGYAIILYRGKNYERPACLRPK 694
RELVK+ISKQ+ + AR LE ESGGILVA+ERV KGYA+I YRGKNY RP LRP+
Sbjct: 665 RELVKLISKQKTLAFVEDTARLLEYESGGILVAIERVPKGYALIYYRGKNYRRPVSLRPR 724
Query: 695 TLLTKREAMKRSLEAQRRQSLKLHVLELTRNIEKLKLQLVKDKEA 739
LLTK +A+KRS+ QR ++L H+ EL R IE++K+++ K+A
Sbjct: 725 NLLTKAKALKRSVAMQRHEALSQHISELERTIEQMKMEIGDSKDA 769
>gi|224111046|ref|XP_002315729.1| predicted protein [Populus trichocarpa]
gi|222864769|gb|EEF01900.1| predicted protein [Populus trichocarpa]
Length = 894
Score = 496 bits (1277), Expect = e-137, Method: Compositional matrix adjust.
Identities = 273/612 (44%), Positives = 383/612 (62%), Gaps = 44/612 (7%)
Query: 151 KEVGRQKWLAKNSKMNEKEKEVPTLAELKLSGKELRRLRTLGIGLRKKLKIGKAGITEGI 210
KE KW A++ K +LAEL L ELRRLR L G + K ++G G+T+ +
Sbjct: 190 KEEDEGKWTARS-------KSRTSLAELTLPESELRRLRNLTYGTKSKTRVGGRGVTQEV 242
Query: 211 VNGIHERWRHAEVVKIVCEDLCRLNMKRTHDSLERKTGGLVVWRSGSKIILYRGADYKYP 270
V+ IH++W+ +E+ ++ E LNMKR H+ LE KTGGLV+WRSG+ + LYRG Y+ P
Sbjct: 243 VDAIHDKWKTSEIARVKVEGAPALNMKRMHEILENKTGGLVIWRSGATVSLYRGVSYEDP 302
Query: 271 YFLADESSTDG--ASSDDLPNQLVDDEGLDETKTHSSGADSAKPSGQSPTNKKVQQTLIH 328
+ SS+ LP T + +K S + + +T I+
Sbjct: 303 ALKWKKRIFKKKETSSNSLP-----------AATSITIGSQSKNSPDNEIHAPRPKTEIN 351
Query: 329 SVGSPDKLRYQLPGEAELVEEADRLLDGLGPRFTDWWGYDPQPVDADLLPATVPGYRRPF 388
V + ++ + + + +E D+LLDGLGPR+TDW G DP PVDAD+LP +PGY+ PF
Sbjct: 352 -VEAANQKETKTQTDVKYEDEVDKLLDGLGPRYTDWPGLDPLPVDADMLPGVIPGYQPPF 410
Query: 389 RLLPYGVQPKLTNDEMTTLRRLGRPLPCHFALGRNRNLQGLAAAIVKLWEKCEIAKIAVK 448
R+LPYGV+P L + T+LRRL R LP HFA+GR+R LQGLA A++KLWEK I K+A+K
Sbjct: 411 RILPYGVRPTLGRQDSTSLRRLARVLPPHFAVGRSRQLQGLAVAMIKLWEKSSIVKVALK 470
Query: 449 RGAQNTNSEMMAQELKRLTGGTLLSRDREFIVFYRGKDFLPPAASSAIEERRKHEFSTSN 508
RG Q T SE MA+++K+LTGG LLSR+++F+VFYRGKDFL P S A+ ER + S +
Sbjct: 471 RGVQLTTSERMAEDIKKLTGGLLLSRNKDFLVFYRGKDFLSPEVSEALLERERLAKSLQD 530
Query: 509 DSKEEPELGNRHDNSGDNTQDEFGCTNDQKSTMHSE----------QKER--RSAEVA-- 554
+ ++ + D +E G + T+ ++ KE+ R AE+
Sbjct: 531 EEEQARLRASALVIPSDEIMEESGIAGSLEETLDADAKWGKRLDDCHKEKIIREAEIVRH 590
Query: 555 ---IRRTNIRLSRVLEKKAEAEKLLAELEEE-RPEQYEVDKEGITEEERYMLRKVGLRMK 610
+RR +L+ K AE+ L ++E +P + + D E IT+EER+M RK+GLRMK
Sbjct: 591 ASIVRRLEKKLAFAQRKLRRAERTLNKVEGFLKPSERQADPESITDEERFMFRKLGLRMK 650
Query: 611 AFLLMGRRGVFDGTVENMHLHWKHRELVKIISKQRKIEAALQEARTLEVESGGILVAVER 670
AFLL+GRRGVFDGTVENMHLHWK+RELVKII K + E + A LE ESGG+LV+V++
Sbjct: 651 AFLLLGRRGVFDGTVENMHLHWKYRELVKIILKAKSFEQVKKIALALEAESGGVLVSVDK 710
Query: 671 VNKGYAIILYRGKNYERPACLRPKTLLTKREAMKRSLEAQRRQSLKLHVLELTRNIEKLK 730
++KGYAII+YRGK+Y+RP+ LRPK LLTKR+A+ RS+E QR ++L+ HV L +EK++
Sbjct: 711 ISKGYAIIVYRGKDYQRPSMLRPKNLLTKRKALARSIEIQRSEALQNHVSALEIKVEKIR 770
Query: 731 -----LQLVKDK 737
+ VKDK
Sbjct: 771 SEIEQMGFVKDK 782
>gi|162459980|ref|NP_001106061.1| CRM family member 3 [Zea mays]
gi|156789080|gb|ABU96081.1| CRM family member 3 [Zea mays]
Length = 842
Score = 496 bits (1276), Expect = e-137, Method: Compositional matrix adjust.
Identities = 272/580 (46%), Positives = 373/580 (64%), Gaps = 32/580 (5%)
Query: 173 PT-LAELKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDL 231
PT +AEL L ELRRLR I ++ + K+G AG+T IV I E+W+ EVV++
Sbjct: 161 PTWMAELTLPAAELRRLRHAAIRIKSRTKVGGAGVTREIVEKIKEKWKTEEVVRVKVSGT 220
Query: 232 CRLNMKRTHDSLERKTGGLVVWRSGSKIILYRGADYKYPYFLADESSTDGASSDDLPNQL 291
LNM+ H+ LERKTGGLV+WRSG+ + LYRG DY P + + D P +
Sbjct: 221 PALNMRLFHEILERKTGGLVIWRSGTSVSLYRGVDYDEPEPTKKSKKNSQSLAMDFPIKG 280
Query: 292 VDDEGLDETKTHSSGADSAKPSGQSPTNKKVQQTLIHSVGSPDKLRYQLPGEAELVEEAD 351
+ L T+T A+S + S + + ++ L+ V +P+ ++Y+ +E D
Sbjct: 281 SSNPSLLPTET----ANSVRDSNVALVSNAAKEELV--VQAPE-IKYE--------DEID 325
Query: 352 RLLDGLGPRFTDWWGYDPQPVDADLLPATVPGYRRPFRLLPYGVQPKLTNDEMTTLRRLG 411
+LLD LGPR+TDW G DP PVDADLLPA +PGY+ PFR+LPYGV+P L+ + T LRRL
Sbjct: 326 KLLDELGPRYTDWPGSDPLPVDADLLPANMPGYKPPFRVLPYGVRPSLSRRDTTNLRRLA 385
Query: 412 RPLPCHFALGRNRNLQGLAAAIVKLWEKCEIAKIAVKRGAQNTNSEMMAQELKRLTGGTL 471
R LP HFALGR+R LQGLA A+VKLWEK IAKIA+KRG Q T SE MA+++K+LTGG +
Sbjct: 386 RGLPPHFALGRSRQLQGLANAMVKLWEKSSIAKIALKRGVQLTTSERMAEDIKKLTGGVM 445
Query: 472 LSRDREFIVFYRGKDFLPPAASSAIEERRKHEFSTSNDSKEEPELGNRHDNSGDNTQDEF 531
LSR+ EFIVFYRGKDFL + + ER + S ++ + + + ++ Q
Sbjct: 446 LSRNNEFIVFYRGKDFLSSELAEVLLERERLAKSLQDEEEARRKAASYFSSAETYAQPTV 505
Query: 532 GCT-------NDQKSTMHSEQ---KERRSAEVA-----IRRTNIRLSRVLEKKAEAEKLL 576
T N + T H E K R+ E A +R+ +LS +K +AE++L
Sbjct: 506 AGTLGETLEANSKYGTKHDENHADKMARTIEAARHADLVRKLEWKLSLAQKKMEKAERVL 565
Query: 577 AELEEE-RPEQYEVDKEGITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVENMHLHWKHR 635
++E RP + E IT+EER+M RK+GLRMKAFLL+GRRGVFDGT+ENMHLHWK+R
Sbjct: 566 GKVETALRPTEDSRPPETITDEERFMFRKLGLRMKAFLLLGRRGVFDGTIENMHLHWKYR 625
Query: 636 ELVKIISKQRKIEAALQEARTLEVESGGILVAVERVNKGYAIILYRGKNYERPACLRPKT 695
ELVKI+ K + + A +LE ESGGILV+V++V+KGYAI+++RGKNY RP+ LRP+
Sbjct: 626 ELVKILVKAKSFADVKRIALSLEAESGGILVSVDKVSKGYAIVVFRGKNYRRPSSLRPRN 685
Query: 696 LLTKREAMKRSLEAQRRQSLKLHVLELTRNIEKLKLQLVK 735
LL+KR+A+ RS+E QR Q+L H +L R +E+LK +LV+
Sbjct: 686 LLSKRKALARSIELQRHQALSRHFAKLNRKVERLKAELVQ 725
Score = 43.1 bits (100), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 49/88 (55%), Gaps = 2/88 (2%)
Query: 934 LSNRDRLLLRKQALRMKKRPVLAVGRSNIVTGVAKAIKAHFEKYPLAIVNVKGRAKGTSV 993
LS RD LR+ A + P A+GRS + G+A A+ +EK +A + +K + T+
Sbjct: 373 LSRRDTTNLRRLARGLP--PHFALGRSRQLQGLANAMVKLWEKSSIAKIALKRGVQLTTS 430
Query: 994 QEVVAKLEEATGAVLVSQEPSKVILYRG 1021
+ + +++ TG V++S+ ++ YRG
Sbjct: 431 ERMAEDIKKLTGGVMLSRNNEFIVFYRG 458
>gi|414591664|tpg|DAA42235.1| TPA: CRM family member 3 [Zea mays]
Length = 1523
Score = 496 bits (1276), Expect = e-137, Method: Compositional matrix adjust.
Identities = 272/580 (46%), Positives = 373/580 (64%), Gaps = 32/580 (5%)
Query: 173 PT-LAELKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDL 231
PT +AEL L ELRRLR I ++ + K+G AG+T IV I E+W+ EVV++
Sbjct: 842 PTWMAELTLPAAELRRLRHAAIRIKSRTKVGGAGVTREIVEKIKEKWKTEEVVRVKVSGT 901
Query: 232 CRLNMKRTHDSLERKTGGLVVWRSGSKIILYRGADYKYPYFLADESSTDGASSDDLPNQL 291
LNM+ H+ LERKTGGLV+WRSG+ + LYRG DY P + + D P +
Sbjct: 902 PALNMRLFHEILERKTGGLVIWRSGTSVSLYRGVDYDEPEPTKKSKKNSQSLAMDFPIKG 961
Query: 292 VDDEGLDETKTHSSGADSAKPSGQSPTNKKVQQTLIHSVGSPDKLRYQLPGEAELVEEAD 351
+ L T+T A+S + S + + ++ L+ V +P+ ++Y+ +E D
Sbjct: 962 SSNPSLLPTET----ANSVRDSNVALVSNAAKEELV--VQAPE-IKYE--------DEID 1006
Query: 352 RLLDGLGPRFTDWWGYDPQPVDADLLPATVPGYRRPFRLLPYGVQPKLTNDEMTTLRRLG 411
+LLD LGPR+TDW G DP PVDADLLPA +PGY+ PFR+LPYGV+P L+ + T LRRL
Sbjct: 1007 KLLDELGPRYTDWPGSDPLPVDADLLPANMPGYKPPFRVLPYGVRPSLSRRDTTNLRRLA 1066
Query: 412 RPLPCHFALGRNRNLQGLAAAIVKLWEKCEIAKIAVKRGAQNTNSEMMAQELKRLTGGTL 471
R LP HFALGR+R LQGLA A+VKLWEK IAKIA+KRG Q T SE MA+++K+LTGG +
Sbjct: 1067 RGLPPHFALGRSRQLQGLANAMVKLWEKSSIAKIALKRGVQLTTSERMAEDIKKLTGGVM 1126
Query: 472 LSRDREFIVFYRGKDFLPPAASSAIEERRKHEFSTSNDSKEEPELGNRHDNSGDNTQDEF 531
LSR+ EFIVFYRGKDFL + + ER + S ++ + + + ++ Q
Sbjct: 1127 LSRNNEFIVFYRGKDFLSSELAEVLLERERLAKSLQDEEEARRKAASYFSSAETYAQPTV 1186
Query: 532 GCT-------NDQKSTMHSEQ---KERRSAEVA-----IRRTNIRLSRVLEKKAEAEKLL 576
T N + T H E K R+ E A +R+ +LS +K +AE++L
Sbjct: 1187 AGTLGETLEANSKYGTKHDENHADKMARTIEAARHADLVRKLEWKLSLAQKKMEKAERVL 1246
Query: 577 AELEEE-RPEQYEVDKEGITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVENMHLHWKHR 635
++E RP + E IT+EER+M RK+GLRMKAFLL+GRRGVFDGT+ENMHLHWK+R
Sbjct: 1247 GKVETALRPTEDSRPPETITDEERFMFRKLGLRMKAFLLLGRRGVFDGTIENMHLHWKYR 1306
Query: 636 ELVKIISKQRKIEAALQEARTLEVESGGILVAVERVNKGYAIILYRGKNYERPACLRPKT 695
ELVKI+ K + + A +LE ESGGILV+V++V+KGYAI+++RGKNY RP+ LRP+
Sbjct: 1307 ELVKILVKAKSFADVKRIALSLEAESGGILVSVDKVSKGYAIVVFRGKNYRRPSSLRPRN 1366
Query: 696 LLTKREAMKRSLEAQRRQSLKLHVLELTRNIEKLKLQLVK 735
LL+KR+A+ RS+E QR Q+L H +L R +E+LK +LV+
Sbjct: 1367 LLSKRKALARSIELQRHQALSRHFAKLNRKVERLKAELVQ 1406
Score = 43.5 bits (101), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 49/88 (55%), Gaps = 2/88 (2%)
Query: 934 LSNRDRLLLRKQALRMKKRPVLAVGRSNIVTGVAKAIKAHFEKYPLAIVNVKGRAKGTSV 993
LS RD LR+ A + P A+GRS + G+A A+ +EK +A + +K + T+
Sbjct: 1054 LSRRDTTNLRRLARGLP--PHFALGRSRQLQGLANAMVKLWEKSSIAKIALKRGVQLTTS 1111
Query: 994 QEVVAKLEEATGAVLVSQEPSKVILYRG 1021
+ + +++ TG V++S+ ++ YRG
Sbjct: 1112 ERMAEDIKKLTGGVMLSRNNEFIVFYRG 1139
>gi|168038664|ref|XP_001771820.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162676951|gb|EDQ63428.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 1106
Score = 495 bits (1275), Expect = e-137, Method: Compositional matrix adjust.
Identities = 315/712 (44%), Positives = 419/712 (58%), Gaps = 70/712 (9%)
Query: 66 SAIQRIADKLRSLGIVEQTTSKDDTLNPEPETRATDNAGEIFIPLPHRIPKYRVGHTIDD 125
+++ RI +KLR++G E T+ D NP P T + F+P P + V +D
Sbjct: 226 ASMARIVEKLRAIGNGESATTMDFDKNP-PATETSS-----FLPRPGQA----VHPGLDR 275
Query: 126 SWSTPENPVPVPGTGAAIVRYNQLNKEVGRQKWLAKNSKMNEKEKEV--PTLAELKLSGK 183
WS P G+ N+E ++ + EK+K V P++AEL L
Sbjct: 276 RWSNSNLEQPSDDLGSRFPWAMGENEE-------QEDHEQIEKKKRVRSPSVAELTLPEP 328
Query: 184 ELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRTHDSL 243
ELRRLRTLG+ L+ +LKIG+ G+T GIV IH+RWR +E+ K+ C+ +NMK+ H+ L
Sbjct: 329 ELRRLRTLGLQLQGRLKIGRLGVTPGIVEAIHDRWRTSELAKVKCDAPLSMNMKKAHEDL 388
Query: 244 ERKTGGLVVWRSGSKIILYRGADYKYPYFLA-DESSTDGASSDDLPNQLVDDEGLDETKT 302
ER TGGLV+WR+GS ++YRG DY +P+ L +E D+ Q + E E +
Sbjct: 389 ERLTGGLVIWRAGSAAVVYRGKDYVHPFVLEREEKELLSLDLDEDEEQELLMEAGSEVEM 448
Query: 303 HSSGADSAKPSGQSPTNKKVQQTLIHSVGSPDKLRYQLPGEAELVEEADRLLDGLGPRFT 362
SS + +G K+ L+ + D + ++EE LLDGLGPR+
Sbjct: 449 ESSIEECFDVTGDQSGEKEF---LMKQGQNADLM---------MMEE---LLDGLGPRYA 493
Query: 363 DWWGYDPQPVDADLLPATVPGYRRPFRLLPYGVQPKLTNDEMTTLRRLGRPLPCHFALGR 422
DW G DP PVD DLL + ++RPFRLLP+GV+PKL + EMT LRRL RP+P HF LGR
Sbjct: 494 DWKGKDPVPVDGDLLLDSEFKFKRPFRLLPHGVKPKLNDFEMTQLRRLARPVPPHFVLGR 553
Query: 423 NRNLQGLAAAIVKLWEKCEIAKIAVKRGAQNTNSEMMAQELK--------------RLTG 468
NR L GLAAAI+KLWEK EI KI VK+G QNT++E MA+ELK RLTG
Sbjct: 554 NRGLDGLAAAIMKLWEKSEIVKIGVKKGVQNTSNEKMAEELKARITSKFPSSRITVRLTG 613
Query: 469 GTLLSRDREFIVFYRGKDFLPPAASSAIEERRKHEFSTSNDSKEEPELGNRH------DN 522
GTLL+RD+E+IV RGKDFLP A A+EER + + + +E L R D
Sbjct: 614 GTLLARDKEYIVLSRGKDFLPSAVRVALEERDRMAKAV-QEEEERIRLSGRKRVVQIVDT 672
Query: 523 SGDNTQDEFGCTND-----QKSTMHSEQKERRSAEVAIR-----RTNIRLSRVLEKKAEA 572
S T +E T QKS +KER +A A R R ++ L+KK A
Sbjct: 673 SKVGTLEEAMETRAAWEGWQKSD--EARKERIAARKAKRGQAMDRIRQKMKLALQKKERA 730
Query: 573 EKLLAELEEE-RPEQYEVDKEGITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVENMHLH 631
LA+++ + P +DKE ++E ERYM R+ GL+ K +LL+GRRGVF GTVENMHLH
Sbjct: 731 MAELAKIDAKTNPTDAPLDKEFLSEAERYMYRQQGLKHKGYLLLGRRGVFGGTVENMHLH 790
Query: 632 WKHRELVKIISKQRKIEAALQEARTLEVESGGILVAVERVNKGYAIILYRGKNYERPACL 691
WKHRELVKI+ K I A Q A+ LE ESGGILV + +KG AII+YRGKNY+RP+ L
Sbjct: 791 WKHRELVKILVKA-PIAEAQQTAKMLERESGGILVDIVNTSKGQAIIVYRGKNYQRPSEL 849
Query: 692 RPKTLLTKREAMKRSLEAQRRQSLKLHVLELTRNIEKLKLQLVKDKEANSLE 743
RP+ LLTKR+A+KRSLE QR QSL+ H+ L IE ++ L K +E + LE
Sbjct: 850 RPRHLLTKRQALKRSLEVQRMQSLEKHIQILMTEIETMQAGLNKMEEQDELE 901
Score = 85.9 bits (211), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/103 (45%), Positives = 66/103 (64%), Gaps = 1/103 (0%)
Query: 926 ENNSRAIQLSNRDRLLLRKQALRMKKRPV-LAVGRSNIVTGVAKAIKAHFEKYPLAIVNV 984
+N +A L+ + R LR+Q M R +G++ + +AK+I A+ +K+P V V
Sbjct: 930 KNFFKAEPLTRKQRQHLRQQIPLMLGRTANFNIGKTTLYEDLAKSICAYLQKHPFVKVGV 989
Query: 985 KGRAKGTSVQEVVAKLEEATGAVLVSQEPSKVILYRGWGAEDE 1027
KGR KG+SV VV ++EE TGAVLVS EPSK+I YRGW A +E
Sbjct: 990 KGRPKGSSVASVVEQIEEHTGAVLVSTEPSKLIFYRGWPAGEE 1032
>gi|218194999|gb|EEC77426.1| hypothetical protein OsI_16218 [Oryza sativa Indica Group]
Length = 818
Score = 495 bits (1275), Expect = e-137, Method: Compositional matrix adjust.
Identities = 283/565 (50%), Positives = 356/565 (63%), Gaps = 105/565 (18%)
Query: 234 LNMKRTHDSLERKTGGLVVWRSGSKIILYRGADYKYPYFL-------ADESSTDGASSD- 285
+NMKRTH+ LERKTGGLV+WRSGS IILYRG DYKYPYF DESS +S D
Sbjct: 1 MNMKRTHEILERKTGGLVIWRSGSTIILYRGTDYKYPYFHDREMKNDMDESSEHTSSDDE 60
Query: 286 --DLP----NQLVDDEGLDETKTHSS-------------GAD---------SAKPSGQSP 317
DL Q +E D H S G D SA+ S S
Sbjct: 61 DADLAIIASEQSGSEEDSDNPAEHGSNHTEEGDDLTRRFGVDALEGNLDIGSAEQSINSA 120
Query: 318 TNKKVQQTLIHS---------------------VGSPDKLRYQLPGEAELVEEADRLLDG 356
T K QQ ++H+ VGSP+K R QLPGE +L EEAD+LLDG
Sbjct: 121 T--KDQQAILHTSTNVSRPSEISGRARSTLVAGVGSPNKFRLQLPGEVKLAEEADKLLDG 178
Query: 357 LGPRFTDWWGYDPQPVDADLLPATVPGYRRPFRLLPYGVQPKLTNDEMTTLRRLGRPLPC 416
LGPRF+DWWGYDP PVDADLLPA VPGYRR
Sbjct: 179 LGPRFSDWWGYDPLPVDADLLPAIVPGYRR------------------------------ 208
Query: 417 HFALGRNRNLQGLAAAIVKLWEKCEIAKIAVKRGAQNTNSEMMAQELKRLTGGTLLSRDR 476
+ NLQGLAA+++KLWE+CE+AK+A+KRGA+N +S++++++LK LTGGTLLSRD
Sbjct: 209 ------SSNLQGLAASMIKLWERCEVAKVAIKRGAENIDSDLISEKLKGLTGGTLLSRDN 262
Query: 477 EFIVFYRGKDFLPPAASSAIEERRKHEFSTS-----NDSKEEPELGNRHDNSGDNTQDEF 531
E IVFYRGKDFLP A S AIE+RRK+ ST N K P+ ++ + D + D
Sbjct: 263 ESIVFYRGKDFLPTAVSLAIEKRRKYGNSTISNPKLNFDKSTPQNSSKLKMATDVSLDGH 322
Query: 532 GCTNDQKSTMHSEQKERRSAEVAIRRTNI--RLSRVLEKKAEAEKLLAELE-EERPEQYE 588
C ++K + + R+ + + N+ RLS+ + +K + EKL+ ELE P + E
Sbjct: 323 ECY-EKKHKDETAVSDNRAESLNVFTQNVEARLSQAIAEKEKTEKLIEELEMSSEPSRAE 381
Query: 589 VDKEGITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVENMHLHWKHRELVKIISKQRKIE 648
+E I+EEERYMLRKVGL+MK+FLL+GRRGVFDGTVENMHLHWK+RELVKII K+ I+
Sbjct: 382 T-REVISEEERYMLRKVGLKMKSFLLLGRRGVFDGTVENMHLHWKYRELVKIICKEHNIK 440
Query: 649 AALQEARTLEVESGGILVAVERVNKGYAIILYRGKNYERPACLRPKTLLTKREAMKRSLE 708
ARTLE ESGGILVAVERV+K +AII+YRGKNY+RP+ LRPK+LL K++A+KRS+E
Sbjct: 441 DVEYAARTLEAESGGILVAVERVSKAHAIIIYRGKNYQRPSTLRPKSLLNKKDALKRSVE 500
Query: 709 AQRRQSLKLHVLELTRNIEKLKLQL 733
QR +SLKLHVL L++NI+ LK Q+
Sbjct: 501 YQRYKSLKLHVLNLSKNIDYLKDQM 525
Score = 61.6 bits (148), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 63/107 (58%), Gaps = 6/107 (5%)
Query: 173 PTLAELK--LSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCED 230
P+ AE + +S +E LR +G+ ++ L +G+ G+ +G V +H W++ E+VKI+C++
Sbjct: 377 PSRAETREVISEEERYMLRKVGLKMKSFLLLGRRGVFDGTVENMHLHWKYRELVKIICKE 436
Query: 231 LCRLNMKRTHDSLERKTGGLVVW----RSGSKIILYRGADYKYPYFL 273
+++ +LE ++GG++V II+YRG +Y+ P L
Sbjct: 437 HNIKDVEYAARTLEAESGGILVAVERVSKAHAIIIYRGKNYQRPSTL 483
Score = 49.3 bits (116), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 51/99 (51%), Gaps = 9/99 (9%)
Query: 391 LPYGVQPKLTNDEMTTLRRLG-----RPLPCHFALGRNRNLQGLAAAIVKLWEKCEIAKI 445
LP P L+N E LR+ RP+ A+GRN + G+A AI ++K +A +
Sbjct: 680 LPSAAAP-LSNRERLMLRKQALKMKKRPV---LAVGRNNVITGVAKAIKTHFKKHPLAIV 735
Query: 446 AVKRGAQNTNSEMMAQELKRLTGGTLLSRDREFIVFYRG 484
+K A T + + EL+ TG L+SR+ ++ YRG
Sbjct: 736 NIKNRADGTPIQQLISELEEATGSVLVSREPNKVILYRG 774
>gi|125590660|gb|EAZ31010.1| hypothetical protein OsJ_15093 [Oryza sativa Japonica Group]
Length = 818
Score = 495 bits (1275), Expect = e-137, Method: Compositional matrix adjust.
Identities = 283/565 (50%), Positives = 356/565 (63%), Gaps = 105/565 (18%)
Query: 234 LNMKRTHDSLERKTGGLVVWRSGSKIILYRGADYKYPYFL-------ADESSTDGASSD- 285
+NMKRTH+ LERKTGGLV+WRSGS IILYRG DYKYPYF DESS +S D
Sbjct: 1 MNMKRTHEILERKTGGLVIWRSGSTIILYRGTDYKYPYFHDREMKNDMDESSEHTSSDDE 60
Query: 286 --DLP----NQLVDDEGLDETKTHSS-------------GAD---------SAKPSGQSP 317
DL Q +E D H S G D SA+ S S
Sbjct: 61 DADLAIIASEQSGSEEDSDNPAEHGSNHTEEGDDLTRRFGVDALEGNLDIGSAEQSINSA 120
Query: 318 TNKKVQQTLIHS---------------------VGSPDKLRYQLPGEAELVEEADRLLDG 356
T K QQ ++H+ VGSP+K R QLPGE +L EEAD+LLDG
Sbjct: 121 T--KDQQAILHTSTNVSRPSEISGRARSTLVAGVGSPNKFRLQLPGEVKLAEEADKLLDG 178
Query: 357 LGPRFTDWWGYDPQPVDADLLPATVPGYRRPFRLLPYGVQPKLTNDEMTTLRRLGRPLPC 416
LGPRF+DWWGYDP PVDADLLPA VPGYRR
Sbjct: 179 LGPRFSDWWGYDPLPVDADLLPAIVPGYRR------------------------------ 208
Query: 417 HFALGRNRNLQGLAAAIVKLWEKCEIAKIAVKRGAQNTNSEMMAQELKRLTGGTLLSRDR 476
+ NLQGLAA+++KLWE+CE+AK+A+KRGA+N +S++++++LK LTGGTLLSRD
Sbjct: 209 ------SSNLQGLAASMIKLWERCEVAKVAIKRGAENIDSDLISEKLKGLTGGTLLSRDN 262
Query: 477 EFIVFYRGKDFLPPAASSAIEERRKHEFSTS-----NDSKEEPELGNRHDNSGDNTQDEF 531
E IVFYRGKDFLP A S AIE+RRK+ ST N K P+ ++ + D + D
Sbjct: 263 ESIVFYRGKDFLPTAVSLAIEKRRKYGNSTISNPKLNFDKSTPQNSSKLKMATDVSLDGH 322
Query: 532 GCTNDQKSTMHSEQKERRSAEVAIRRTNI--RLSRVLEKKAEAEKLLAELE-EERPEQYE 588
C ++K + + R+ + + N+ RLS+ + +K + EKL+ ELE P + E
Sbjct: 323 ECY-EKKHKDETAVSDNRAESLNVFAQNVEARLSQAIAEKEKTEKLIEELEMSSEPSRAE 381
Query: 589 VDKEGITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVENMHLHWKHRELVKIISKQRKIE 648
+E I+EEERYMLRKVGL+MK+FLL+GRRGVFDGTVENMHLHWK+RELVKII K+ I+
Sbjct: 382 T-REVISEEERYMLRKVGLKMKSFLLLGRRGVFDGTVENMHLHWKYRELVKIICKEHNIK 440
Query: 649 AALQEARTLEVESGGILVAVERVNKGYAIILYRGKNYERPACLRPKTLLTKREAMKRSLE 708
ARTLE ESGGILVAVERV+K +AII+YRGKNY+RP+ LRPK+LL K++A+KRS+E
Sbjct: 441 DVEYAARTLEAESGGILVAVERVSKAHAIIIYRGKNYQRPSTLRPKSLLNKKDALKRSVE 500
Query: 709 AQRRQSLKLHVLELTRNIEKLKLQL 733
QR +SLKLHVL L++NI+ LK Q+
Sbjct: 501 YQRYKSLKLHVLNLSKNIDYLKDQM 525
Score = 61.6 bits (148), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 63/107 (58%), Gaps = 6/107 (5%)
Query: 173 PTLAELK--LSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCED 230
P+ AE + +S +E LR +G+ ++ L +G+ G+ +G V +H W++ E+VKI+C++
Sbjct: 377 PSRAETREVISEEERYMLRKVGLKMKSFLLLGRRGVFDGTVENMHLHWKYRELVKIICKE 436
Query: 231 LCRLNMKRTHDSLERKTGGLVVW----RSGSKIILYRGADYKYPYFL 273
+++ +LE ++GG++V II+YRG +Y+ P L
Sbjct: 437 HNIKDVEYAARTLEAESGGILVAVERVSKAHAIIIYRGKNYQRPSTL 483
Score = 49.3 bits (116), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 51/99 (51%), Gaps = 9/99 (9%)
Query: 391 LPYGVQPKLTNDEMTTLRRLG-----RPLPCHFALGRNRNLQGLAAAIVKLWEKCEIAKI 445
LP P L+N E LR+ RP+ A+GRN + G+A AI ++K +A +
Sbjct: 680 LPSAAAP-LSNRERLMLRKQALKMKKRPV---LAVGRNNVITGVAKAIKTHFKKHPLAIV 735
Query: 446 AVKRGAQNTNSEMMAQELKRLTGGTLLSRDREFIVFYRG 484
+K A T + + EL+ TG L+SR+ ++ YRG
Sbjct: 736 NIKNRADGTPIQQLISELEEATGSVLVSREPNKVILYRG 774
>gi|225432918|ref|XP_002280226.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic [Vitis vinifera]
gi|297737163|emb|CBI26364.3| unnamed protein product [Vitis vinifera]
Length = 902
Score = 495 bits (1274), Expect = e-137, Method: Compositional matrix adjust.
Identities = 267/589 (45%), Positives = 370/589 (62%), Gaps = 36/589 (6%)
Query: 174 TLAELKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCR 233
+LAEL L ELRRLR L + + K KIG G+T+ +V+ I E+W+ +E+VK+ CE
Sbjct: 214 SLAELTLPESELRRLRNLTMRTKNKTKIGGGGVTQAVVDMIREKWKTSEIVKLKCEGAAA 273
Query: 234 LNMKRTHDSLERKTGGLVVWRSGSKIILYRGADYKYPYFLADESSTDGASSDDLPNQLVD 293
LNM+R H+ LERKTGGLV+WRSG+ + LYRG Y+ P L +S
Sbjct: 274 LNMRRIHEILERKTGGLVIWRSGTSVSLYRGVSYEVPVQLNKRVYKKNETSHS------- 326
Query: 294 DEGLDETKTHSSGADSAKPSGQSP---TNKKVQQTLIHSVGSPDKLRYQLPGEAELVEEA 350
+S S K SG +P +N+ V + ++ D E + +E
Sbjct: 327 --SFSSITPNSFAISSNKTSGNAPAVGSNQNVHASQA-TLNITDGENKDTESEVKYEDEI 383
Query: 351 DRLLDGLGPRFTDWWGYDPQPVDADLLPATVPGYRRPFRLLPYGVQPKLTNDEMTTLRRL 410
D+LLDGLGPR+TDW G DP P+DADLLP + GY+ PFR+LPYGV+ L E T LRRL
Sbjct: 384 DKLLDGLGPRYTDWPGCDPLPIDADLLPGKIHGYQPPFRILPYGVRSSLGLKEATALRRL 443
Query: 411 GRPLPCHFALGRNRNLQGLAAAIVKLWEKCEIAKIAVKRGAQNTNSEMMAQELKRLTGGT 470
R LP HFALGR+R L+GLA A++KLWE+ IAK+A+KRG Q T SE MA+++K+LTGG
Sbjct: 444 ARVLPPHFALGRSRQLEGLAMAMIKLWERSSIAKVALKRGVQLTTSERMAEDIKKLTGGV 503
Query: 471 LLSRDREFIVFYRGKDFLPPAASSAIEERRKHEFSTSNDSKEEPELGNRHDNSGDNTQDE 530
LLSR+++F+VFYRGK+FL + A+ ER + + ++ ++ + ++
Sbjct: 504 LLSRNKDFLVFYRGKNFLSSDVTEALLERERLAKALQDEEEQARLRASTLITPTVGITEQ 563
Query: 531 FGCTNDQKSTM------------HSEQKERRSAEVA-----IRRTNIRLSRVLEKKAEAE 573
G T+ H +QK + AEVA +R+ RL+ K +AE
Sbjct: 564 VGSAGTLGETLEADARWGKRLDDHDKQKMLKKAEVARHANLVRKLERRLALAERKLMKAE 623
Query: 574 KLLAELEEE-RPEQYEVDKEGITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVENMHLHW 632
L+++EE +P D E IT+EER+M RK+GLRMKAFLL+GRRGVF GTVENMHLHW
Sbjct: 624 NALSKVEEFLKPANRPADPESITDEERFMFRKLGLRMKAFLLLGRRGVFSGTVENMHLHW 683
Query: 633 KHRELVKIISKQRKIEAALQEARTLEVESGGILVAVERVNKGYAIILYRGKNYERPACLR 692
K+RELVKII K + + + A LE ESGG+LV+V++V+KG+AI+++RGK+Y+RP+ LR
Sbjct: 684 KYRELVKIIVKAKTFDQVKKTALALESESGGVLVSVDKVSKGFAIVVFRGKDYQRPSTLR 743
Query: 693 PKTLLTKREAMKRSLEAQRRQSLKLHVLELTRNIEKLK-----LQLVKD 736
PK LLTKR+A+ RS+E QRR++L H+ L RN+EKL+ + +VKD
Sbjct: 744 PKNLLTKRKALARSIELQRREALYNHISALQRNVEKLRSEIEQMDIVKD 792
>gi|357441009|ref|XP_003590782.1| Chloroplastic group IIA intron splicing facilitator CRS1 [Medicago
truncatula]
gi|355479830|gb|AES61033.1| Chloroplastic group IIA intron splicing facilitator CRS1 [Medicago
truncatula]
Length = 838
Score = 494 bits (1273), Expect = e-137, Method: Compositional matrix adjust.
Identities = 306/712 (42%), Positives = 418/712 (58%), Gaps = 95/712 (13%)
Query: 66 SAIQRIADKLRSLGIVEQTTSKDDTLNPEPETRATDNAGE-IFIPLPHRIPKYRVGHTID 124
S + RI +KL+ G D+ N + E + E IF +P R G +
Sbjct: 109 SRMDRIVEKLKKFGY-----ESDENENIKEEGVIEKGSMEDIFYVEEGMLPNTRGGFS-- 161
Query: 125 DSWSTPENPVPVPGTGAAI---VRYNQ----LNKEVGRQKWLAKNSKMNEKEKEVPTLAE 177
PE+P + G+ VR+ +++EV + + ++K ++AE
Sbjct: 162 -----PESPFGIGSYGSGDGGEVRFPWEKPVVDEEV--------EERTSSRKKSKTSMAE 208
Query: 178 LKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMK 237
L L ELRRL L + K +IG G+T+ V+ IHERW+ +E+V++ E LNMK
Sbjct: 209 LTLPESELRRLLKLTFMKKHKTRIGGGGVTQAAVDKIHERWKTSEIVRLKFEGDAALNMK 268
Query: 238 RTHDSLERKTGGLVVWRSGSKIILYRGADYKYP-------YFLADESSTD--GASSDDL- 287
R H+ LE+KTGGLV+WRSG+ + LYRG YK P + +E S A SDD
Sbjct: 269 RMHEILEKKTGGLVIWRSGNSVSLYRGVSYKDPSIQQNKQLYRKNEKSLKFLSAPSDDFE 328
Query: 288 --PNQLVDDEGLDETKTHSSGADSAKPSGQSPTNKKVQQTLIHSVGSPDKLRYQLPGEAE 345
P++ D ETKT +S TN + ++ V P K+ Y+
Sbjct: 329 VEPSEFTTD---SETKTSLEKLES--------TNDQKEK-----VNLP-KISYE------ 365
Query: 346 LVEEADRLLDGLGPRFTDWWGYDPQPVDADLLPATVPGYRRPFRLLPYGVQPKLTNDEMT 405
+E D+LLDGLGPR+TDW G +P PVDAD+LP TVPGY+ PFR+LP+GV+P L E T
Sbjct: 366 --DEVDKLLDGLGPRYTDWPGCEPLPVDADMLPPTVPGYQPPFRVLPFGVRPTLGFKEAT 423
Query: 406 TLRRLGRPLPCHFALGRNRNLQGLAAAIVKLWEKCEIAKIAVKRGAQNTNSEMMAQELKR 465
+LRR+ R LP HFALGRNR LQGLAAA++KLWEK IAK+A+KRG Q T SE MA+E+K+
Sbjct: 424 SLRRIARGLPPHFALGRNRQLQGLAAAMIKLWEKSSIAKVALKRGVQLTTSERMAEEIKK 483
Query: 466 LTGGTLLSRDREFIVFYRGKDFLPPAASSAIEERRKH---------------------EF 504
LTGG +LSR+++F+VFYRGK+FL P + A+ ER K
Sbjct: 484 LTGGIILSRNKDFLVFYRGKNFLSPDVTQALLEREKMAKSMQDEEEQARLRASSLILPAI 543
Query: 505 STSNDSKEEPELGNRHDNSGD--NTQDEFGCTNDQKSTMHSEQKERRSAEVAIRRTNIRL 562
+TS S E LG D T DE C ++QK EQ R A + +R+ +L
Sbjct: 544 NTSELSAEAGTLGETLDADAKWGKTLDE--C-HEQKVMREVEQ--LRHANI-VRKLEEKL 597
Query: 563 SRVLEKKAEAEKLLAELEEE-RPEQYEVDKEGITEEERYMLRKVGLRMKAFLLMGRRGVF 621
S K AE+ L ++E +P + D E IT+EER+M RK+GLRMKAFLL+GRRGVF
Sbjct: 598 SLAERKIRRAERALMKVEVSLKPSETRADPESITDEERFMFRKLGLRMKAFLLLGRRGVF 657
Query: 622 DGTVENMHLHWKHRELVKIISKQRKIEAALQEARTLEVESGGILVAVERVNKGYAIILYR 681
DGT+ENMHLHWK+RELVKII K E + A LE ESGG+LV+V++V+KGY+I++YR
Sbjct: 658 DGTIENMHLHWKYRELVKIIVKANNFEHVKKIALALEAESGGVLVSVDKVSKGYSILVYR 717
Query: 682 GKNYERPACLRPKTLLTKREAMKRSLEAQRRQSLKLHVLELTRNIEKLKLQL 733
GK+Y+RP+ LRPK LLTKR+A+ RS+E QR ++L H+ L +EKL+ ++
Sbjct: 718 GKDYQRPSMLRPKNLLTKRKALARSIELQRHEALSSHISTLQSKVEKLRSEI 769
>gi|255551945|ref|XP_002517017.1| conserved hypothetical protein [Ricinus communis]
gi|223543652|gb|EEF45180.1| conserved hypothetical protein [Ricinus communis]
Length = 773
Score = 494 bits (1272), Expect = e-136, Method: Compositional matrix adjust.
Identities = 269/606 (44%), Positives = 385/606 (63%), Gaps = 52/606 (8%)
Query: 156 QKWLAKNSKMNEKEKEVPTLAELKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIH 215
+KW A++ K LAEL L ELRRLR L ++ K+++ AG+T+ +V+ IH
Sbjct: 88 KKWTARS-------KSRTQLAELTLPESELRRLRNLTYQIKSKVRVKGAGVTQEVVDSIH 140
Query: 216 ERWRHAEVVKIVCEDLCRLNMKRTHDSLERKTGGLVVWRSGSKIILYRGADYKYPYFLAD 275
+RW+ +E+V++ E LNM+R H+ LERKTGGLV+WRSG+ + LYRG Y+ P
Sbjct: 141 DRWKTSEIVRVKVEGAPALNMRRMHEILERKTGGLVIWRSGTSVSLYRGVSYEDP----- 195
Query: 276 ESSTDGASSDDLPNQLVDDEGLDETKTHSSGADSAKPSGQSPTNKKVQQTLIHSVGSPD- 334
S L Q++ L ++ PS +S + + ++S + +
Sbjct: 196 --------SVQLNKQILKRNELSNNSLSTATGIIRSPS-KSAASSDLNMPHLNSDSTAEG 246
Query: 335 --KLRYQLPGEAELVEEADRLLDGLGPRFTDWWGYDPQPVDADLLPATVPGYRRPFRLLP 392
K ++ E + +E D+LL+GLGPR+TDW G DP PVDAD+LP +PGY+ PFR+LP
Sbjct: 247 EEKKEIEMETEVKYEDEVDKLLEGLGPRYTDWAGLDPLPVDADMLPGIIPGYQPPFRILP 306
Query: 393 YGVQPKLTNDEMTTLRRLGRPLPCHFALGRNRNLQGLAAAIVKLWEKCEIAKIAVKRGAQ 452
YGV+ L E T+LRRL R LP HFALGR+R LQGLA A++KLWEK IAKI++KRG Q
Sbjct: 307 YGVRSSLGQKEATSLRRLARILPPHFALGRSRQLQGLADAMIKLWEKSSIAKISLKRGVQ 366
Query: 453 NTNSEMMAQELKRLTGGTLLSRDREFIVFYRGKDFLPPAASSAIEERRKHE--------- 503
T SE MA+++K+LTGG LLSR+++F+VFYRGKDFL P + A+ ER +
Sbjct: 367 LTTSERMAEDIKKLTGGMLLSRNKDFLVFYRGKDFLSPEVTEALVERERLAQSLQDKEEQ 426
Query: 504 --------FSTSNDSKEEPELGNRHDNSGDNTQDEFGCTNDQKSTMHSEQKERRSAEVA- 554
F + ++ E+P + + D +G DQ + +K R AE+A
Sbjct: 427 ARLRASALFVQTAETLEQPGTAGTLEETLD-ADARWGKCLDQ----NHREKIMREAEIAR 481
Query: 555 ----IRRTNIRLSRVLEKKAEAEKLLAELEEE-RPEQYEVDKEGITEEERYMLRKVGLRM 609
+R+ +L+ +K +AE+ L+++E +P + + D E IT+EER+M RK+GLRM
Sbjct: 482 HANLVRKLESKLAFAEKKLMKAERALSKVEVFLKPAERQADPESITDEERFMFRKLGLRM 541
Query: 610 KAFLLMGRRGVFDGTVENMHLHWKHRELVKIISKQRKIEAALQEARTLEVESGGILVAVE 669
KAFLL+GRRGVFDGTVENMHLHWK+RELVKII K + IE + A LE ESGGILV+V+
Sbjct: 542 KAFLLLGRRGVFDGTVENMHLHWKYRELVKIILKAKNIEQVKKIALALEAESGGILVSVD 601
Query: 670 RVNKGYAIILYRGKNYERPACLRPKTLLTKREAMKRSLEAQRRQSLKLHVLELTRNIEKL 729
RV+KGYAII++RGK+Y+RP+ LRP LLTKR+A+ RS+E QR ++L H+ L + ++K+
Sbjct: 602 RVSKGYAIIVFRGKDYQRPSKLRPGNLLTKRKALARSIEIQRSEALLKHISALQKKVDKI 661
Query: 730 KLQLVK 735
+ ++ +
Sbjct: 662 RYEIAQ 667
Score = 40.0 bits (92), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 41/69 (59%)
Query: 953 PVLAVGRSNIVTGVAKAIKAHFEKYPLAIVNVKGRAKGTSVQEVVAKLEEATGAVLVSQE 1012
P A+GRS + G+A A+ +EK +A +++K + T+ + + +++ TG +L+S+
Sbjct: 330 PHFALGRSRQLQGLADAMIKLWEKSSIAKISLKRGVQLTTSERMAEDIKKLTGGMLLSRN 389
Query: 1013 PSKVILYRG 1021
++ YRG
Sbjct: 390 KDFLVFYRG 398
>gi|47900539|gb|AAT39274.1| unknown protein [Oryza sativa Japonica Group]
gi|50878415|gb|AAT85189.1| hypothetical protein [Oryza sativa Japonica Group]
Length = 798
Score = 494 bits (1271), Expect = e-136, Method: Compositional matrix adjust.
Identities = 289/691 (41%), Positives = 405/691 (58%), Gaps = 69/691 (9%)
Query: 68 IQRIADKLRSLGIVEQTTSKDDTLNPEPETRATDNAGEIFIPLPHRIPKYRVGHTIDDSW 127
I RI +LR+LG+ S DD T G R+ +D SW
Sbjct: 91 IDRIVHRLRNLGL----ASDDDEPTAAAATATAPPDG-----------NERLSDLLDRSW 135
Query: 128 STPENPVPVPGTGAAIVRYNQLNKEVGRQKWLAKNSKMNEKEKEVPTLAELKLSGKELRR 187
+ P+ +++ + + GR+ + + + P+LAEL + +ELRR
Sbjct: 136 ARPDQQFAASSFDESVLPWERDEVARGREN---EEDGVKRRRVRAPSLAELTIEDEELRR 192
Query: 188 LRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKI-VCEDLCRLNMKRTHDSLERK 246
LR LG+ LR ++ + KAG+T+ + IH+ WR +E+V++ EDL +MK H+ +ER+
Sbjct: 193 LRRLGMTLRDRITVPKAGVTQAVTEKIHDAWRKSELVRLKFHEDLAH-DMKTAHELVERR 251
Query: 247 TGGLVVWRSGSKIILYRGADYKYPYFLADESSTDGASSDDLPNQLVDDEGLDETKTHSSG 306
TGGL++WRSGS +++YRG++YK P + E LD + G
Sbjct: 252 TGGLIIWRSGSVMVVYRGSNYKRP---------------------LKSETLDGNSSAVKG 290
Query: 307 ADSAK--PSGQSPTNKKVQQTLIHSVGSPDKLRYQLPGEAELVEEA---DRLLDGLGPRF 361
AD P SPT Q +++ R + ++ EE +++LD LGPRF
Sbjct: 291 ADGTLFIPDASSPTEHDSQGKDVNT-QREIAARLNMQNTEDMTEEELEFNQMLDELGPRF 349
Query: 362 TDWWGYDPQPVDADLLPATVPGYRRPFRLLPYGVQPKLTNDEMTTLRRLGRPLPCHFALG 421
DWWG PVDADLLP T+PGY+ PFRLLP G++ LTN E+T LR+L R LPCHFALG
Sbjct: 350 VDWWGTGILPVDADLLPQTIPGYKTPFRLLPTGMRLTLTNAELTNLRKLARDLPCHFALG 409
Query: 422 RNRNLQGLAAAIVKLWEKCEIAKIAVKRGAQNTNSEMMAQELKRLTGGTLLSRDREFIVF 481
RNRN QGLAAAIVKLWEK + KIAVKRG QNTN+++M++E+K LTGGTLL R++ +IV
Sbjct: 410 RNRNHQGLAAAIVKLWEKSLVVKIAVKRGIQNTNNKLMSEEIKNLTGGTLLLRNKYYIVI 469
Query: 482 YRGKDFLPPAASSAIEERRKHEFSTSNDSKEEPELGNRH--DNSGD-----NTQDEFGCT 534
YRGKDFLP + ++A+ ER + N +++ + H D+S D T EF
Sbjct: 470 YRGKDFLPTSVAAALAEREELTKDIQNVEEQKRCIPVVHSMDDSLDGHALAGTLAEFQEA 529
Query: 535 NDQ--KSTMHSEQKERRSA------EVAIRRTNIRLSRVLEKKAEAEKLLAELEEE---- 582
+ + EQ+E + A E +R +LS K AE+LL+++E
Sbjct: 530 QARWGREVTAKEQEEMKEASSRSVKEKLFKRLEHKLSIAQAKIHRAERLLSKIEASMVLA 589
Query: 583 RPEQYEVDKEGITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVENMHLHWKHRELVKIIS 642
P DKE IT+EER + R++GLR+KA+L +G RGVFDG +ENMHLHWKHRE+VK+I+
Sbjct: 590 NPSD---DKEMITDEERSVFRRIGLRLKAYLPVGIRGVFDGVIENMHLHWKHREVVKLIT 646
Query: 643 KQRKIEAALQEARTLEVESGGILVAVERVNKGYAIILYRGKNYERPACLRPKTLLTKREA 702
KQ+ + + AR LE ESGGILVA+ERV KGYA+I YRGKNY RP +RP+ LLTK +A
Sbjct: 647 KQKTLPFVEETARLLEYESGGILVAIERVTKGYALIFYRGKNYRRPINIRPRNLLTKAKA 706
Query: 703 MKRSLEAQRRQSLKLHVLELTRNIEKLKLQL 733
+KR++ QR ++L H+ EL NI ++KL L
Sbjct: 707 LKRAVAMQRHEALSQHIAELENNIRQMKLDL 737
>gi|125553229|gb|EAY98938.1| hypothetical protein OsI_20893 [Oryza sativa Indica Group]
Length = 801
Score = 493 bits (1268), Expect = e-136, Method: Compositional matrix adjust.
Identities = 289/691 (41%), Positives = 405/691 (58%), Gaps = 69/691 (9%)
Query: 68 IQRIADKLRSLGIVEQTTSKDDTLNPEPETRATDNAGEIFIPLPHRIPKYRVGHTIDDSW 127
I RI +LR+LG+ S DD T G R+ +D SW
Sbjct: 94 IDRIVHRLRNLGL----ASDDDEPAAAAATATAPPDG-----------NERLSDLLDRSW 138
Query: 128 STPENPVPVPGTGAAIVRYNQLNKEVGRQKWLAKNSKMNEKEKEVPTLAELKLSGKELRR 187
+ P+ +++ + + GR+ + + + P+LAEL + +ELRR
Sbjct: 139 ARPDQQFAASSFDESVLPWERDEVARGREN---EEDGVKRRRVRAPSLAELTIEDEELRR 195
Query: 188 LRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKI-VCEDLCRLNMKRTHDSLERK 246
LR LG+ LR ++ + KAG+T+ + IH+ WR +E+V++ EDL +MK H+ +ER+
Sbjct: 196 LRRLGMTLRDRITVPKAGVTQAVTEKIHDAWRKSELVRLKFHEDLAH-DMKTAHELVERR 254
Query: 247 TGGLVVWRSGSKIILYRGADYKYPYFLADESSTDGASSDDLPNQLVDDEGLDETKTHSSG 306
TGGL++WRSGS +++YRG++YK P + E LD + G
Sbjct: 255 TGGLIIWRSGSVMVVYRGSNYKRP---------------------LKSETLDGNSSAVKG 293
Query: 307 ADSAK--PSGQSPTNKKVQQTLIHSVGSPDKLRYQLPGEAELVEEA---DRLLDGLGPRF 361
AD P SPT Q +++ R + ++ EE +++LD LGPRF
Sbjct: 294 ADGTLFIPDASSPTEHDSQGKDVNT-QREIAARLNMQNTEDMTEEELEFNQMLDELGPRF 352
Query: 362 TDWWGYDPQPVDADLLPATVPGYRRPFRLLPYGVQPKLTNDEMTTLRRLGRPLPCHFALG 421
DWWG PVDADLLP T+PGY+ PFRLLP G++ LTN E+T LR+L R LPCHFALG
Sbjct: 353 VDWWGTGILPVDADLLPQTIPGYKTPFRLLPTGMRLTLTNAELTNLRKLARDLPCHFALG 412
Query: 422 RNRNLQGLAAAIVKLWEKCEIAKIAVKRGAQNTNSEMMAQELKRLTGGTLLSRDREFIVF 481
RNRN QGLAAAIVKLWEK + KIAVKRG QNTN+++M++E+K LTGGTLL R++ +IV
Sbjct: 413 RNRNHQGLAAAIVKLWEKSLVVKIAVKRGIQNTNNKLMSEEIKNLTGGTLLLRNKYYIVI 472
Query: 482 YRGKDFLPPAASSAIEERRKHEFSTSNDSKEEPELGNRH--DNSGD-----NTQDEFGCT 534
YRGKDFLP + ++A+ ER + N +++ + H D+S D T EF
Sbjct: 473 YRGKDFLPTSVAAALAEREELTKDIQNVEEQKRCIPVVHSMDDSLDGHALAGTLAEFQEA 532
Query: 535 NDQ--KSTMHSEQKERRSA------EVAIRRTNIRLSRVLEKKAEAEKLLAELEEE---- 582
+ + EQ+E + A E +R +LS K AE+LL+++E
Sbjct: 533 QARWGREVTAKEQEEMKEASSRSVKEKLFKRLEHKLSIAQAKIHRAERLLSKIEASMVLA 592
Query: 583 RPEQYEVDKEGITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVENMHLHWKHRELVKIIS 642
P DKE IT+EER + R++GLR+KA+L +G RGVFDG +ENMHLHWKHRE+VK+I+
Sbjct: 593 NPSD---DKEMITDEERSVFRRIGLRLKAYLPVGIRGVFDGVIENMHLHWKHREVVKLIT 649
Query: 643 KQRKIEAALQEARTLEVESGGILVAVERVNKGYAIILYRGKNYERPACLRPKTLLTKREA 702
KQ+ + + AR LE ESGGILVA+ERV KGYA+I YRGKNY RP +RP+ LLTK +A
Sbjct: 650 KQKTLPFVEETARLLEYESGGILVAIERVPKGYALIFYRGKNYRRPINIRPRNLLTKAKA 709
Query: 703 MKRSLEAQRRQSLKLHVLELTRNIEKLKLQL 733
+KR++ QR ++L H+ EL NI ++KL L
Sbjct: 710 LKRAVAMQRHEALSQHIAELENNIRQMKLDL 740
>gi|147852748|emb|CAN79523.1| hypothetical protein VITISV_010525 [Vitis vinifera]
Length = 902
Score = 491 bits (1265), Expect = e-136, Method: Compositional matrix adjust.
Identities = 269/592 (45%), Positives = 371/592 (62%), Gaps = 42/592 (7%)
Query: 174 TLAELKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCR 233
+LAEL L ELRRLR L + + K KIG G+T+ +V+ I E+W+ +E+VK+ CE
Sbjct: 214 SLAELTLPESELRRLRNLTMRTKNKTKIGGGGVTQAVVDMIREKWKTSEIVKLKCEGAAA 273
Query: 234 LNMKRTHDSLERKTGGLVVWRSGSKIILYRGADYKYPYFLADESSTDGASSDDLPNQLVD 293
LNM+R H+ LERKTGGLV+WRSG+ + LYRG Y+ P L +S
Sbjct: 274 LNMRRIHEILERKTGGLVIWRSGTSVSLYRGVSYEVPVQLNKRVYKKNETSHS------- 326
Query: 294 DEGLDETKTHSSGADSAKPSGQSP---TNKKV---QQTLIHSVGSPDKLRYQLPGEAELV 347
+S S K SG +P +N+ V Q TL + G ++ E E+
Sbjct: 327 --SFSSITPNSFAISSNKTSGNAPAVGSNQNVHASQATLXITDGENKDTESEVKYEDEI- 383
Query: 348 EEADRLLDGLGPRFTDWWGYDPQPVDADLLPATVPGYRRPFRLLPYGVQPKLTNDEMTTL 407
D+LLDGLGPR+TDW DP P+DADLLP + GY+ PFR+LPYGV+ L E T L
Sbjct: 384 ---DKLLDGLGPRYTDWPXCDPLPIDADLLPGKIHGYQPPFRILPYGVRSSLGLKEATAL 440
Query: 408 RRLGRPLPCHFALGRNRNLQGLAAAIVKLWEKCEIAKIAVKRGAQNTNSEMMAQELKRLT 467
RRL R LP HFALGR+R L+GLA A++KLWE+ IAK+A+KRG Q T SE MA+++K+LT
Sbjct: 441 RRLARVLPPHFALGRSRQLEGLAMAMIKLWERSSIAKVALKRGVQLTTSERMAEDIKKLT 500
Query: 468 GGTLLSRDREFIVFYRGKDFLPPAASSAIEERRKHEFSTSNDSKEEPELGNRHDNSGDNT 527
GG LLSR+++F+VFYRGK+FL + A+ ER + + ++ ++ +
Sbjct: 501 GGVLLSRNKDFLVFYRGKNFLSSDVTEALLERERLAKALQDEEEQARLRASTLITPTVGI 560
Query: 528 QDEFGCTNDQKSTM------------HSEQKERRSAEVA-----IRRTNIRLSRVLEKKA 570
++ G T+ H +QK + AEVA +R+ RL+ K
Sbjct: 561 TEQVGSAGTLGETLEADARWGKRLDDHDKQKMLKKAEVARHANLVRKLERRLALAERKLM 620
Query: 571 EAEKLLAELEEE-RPEQYEVDKEGITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVENMH 629
+AE L+++EE +P D E IT+EER+M RK+GLRMKAFLL+GRRGVF GTVENMH
Sbjct: 621 KAENALSKVEEFLKPANRPADPESITDEERFMFRKLGLRMKAFLLLGRRGVFSGTVENMH 680
Query: 630 LHWKHRELVKIISKQRKIEAALQEARTLEVESGGILVAVERVNKGYAIILYRGKNYERPA 689
LHWK+RELVKII K + + + A LE ESGG+LV+V++V+KG+AI+++RGK+Y+RP+
Sbjct: 681 LHWKYRELVKIIVKAKTFDQVKKTALALESESGGVLVSVDKVSKGFAIVVFRGKDYQRPS 740
Query: 690 CLRPKTLLTKREAMKRSLEAQRRQSLKLHVLELTRNIEKLK-----LQLVKD 736
LRPK LLTKR+A+ RS+E QRR++L H+ L RN+EKL+ + +VKD
Sbjct: 741 TLRPKNLLTKRKALARSIELQRREALYNHISALQRNVEKLRSEIEQMDIVKD 792
>gi|356576487|ref|XP_003556362.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Glycine max]
Length = 835
Score = 491 bits (1264), Expect = e-136, Method: Compositional matrix adjust.
Identities = 301/725 (41%), Positives = 426/725 (58%), Gaps = 76/725 (10%)
Query: 62 NDTTSAIQRIADKLRSLGIVEQTTSKDDTLNPEPETRATDNAGEIFIPLPHRIPKYRVGH 121
N S + RI +KL+ G VE D + + + +IF +P R G
Sbjct: 109 NTGGSTMDRIVEKLKKFGYVE------DGIQNKERVIEKGSVEDIFYVEEGMLPNSRGGF 162
Query: 122 TIDDSWSTPENPVPVPGTGAAIVRYNQLNKEVGRQKW-------LAKNSKMNEKEKEVPT 174
+ E+P+ G G+ + ++EV R W L + M + K +
Sbjct: 163 S-------SESPL---GFGS----FGSDDREV-RFPWEKPVVEELEERKSMRSRSKT--S 205
Query: 175 LAELKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRL 234
LAEL L EL+RL L + K +IG++G+T+ +V+ IHERW+ +E+V++ E L
Sbjct: 206 LAELTLPESELKRLLKLTFEKKHKTRIGRSGVTQAVVDKIHERWKTSEIVRLKFEGEAAL 265
Query: 235 NMKRTHDSLERKTGGLVVWRSGSKIILYRGADYKYPYFLADESSTDGA--SSDDLPNQLV 292
NMKR H+ LERKTGGLV+WRSG+ + LYRG Y+ P ++ + SS LP
Sbjct: 266 NMKRMHEILERKTGGLVIWRSGNSVSLYRGVSYEVPSVQQNKKIYRKSENSSKLLPTPSY 325
Query: 293 DDEGLDETKTHSSGADSAKPSGQSPTNKKVQQTLIHSVGSPDKLRYQLPGEAELVEEADR 352
+ G + +D A SG S K++ T + +K R LP + E D+
Sbjct: 326 NSVG--------NPSDIASNSGTSAPLAKLEST------NDEKERDYLP-KVNYEHEVDK 370
Query: 353 LLDGLGPRFTDWWGYDPQPVDADLLPATVPGYRRPFRLLPYGVQPKLTNDEMTTLRRLGR 412
LLDGLGPR+TDW G DP PVDAD+LP TVPGY+ PFR+LP+GV+ L E T LRR+ R
Sbjct: 371 LLDGLGPRYTDWPGCDPLPVDADMLPVTVPGYQPPFRVLPFGVRATLGLREATALRRIAR 430
Query: 413 PLPCHFALGRNRNLQGLAAAIVKLWEKCEIAKIAVKRGAQNTNSEMMAQELKRLTGGTLL 472
LP HFALGRNR LQGLA A++KLWE IAK+A+KRG Q T SE MA+E+K+LTGG LL
Sbjct: 431 TLPPHFALGRNRQLQGLAVAMIKLWEISSIAKVALKRGVQLTTSERMAEEIKKLTGGILL 490
Query: 473 SRDREFIVFYRGKDFLPPAASSAIEERRKHE------------------FSTSNDSKEEP 514
SR+++F+VF+RGK+FL + A+ ER + T+N S+
Sbjct: 491 SRNKDFLVFFRGKNFLSADVTQALLERERMAKVMQDEEEQARLRASSLLIPTNNTSELSA 550
Query: 515 ELGNRHDNSGDNTQDEFGCTNDQ--KSTMHSEQKERRSAEVAIRRTNIRLSRVLEKKAEA 572
E G + + + +G T D+ K + E ++ R A + +++ +LS K A
Sbjct: 551 EAGTLGETLDADAK--WGKTLDERHKQKIMREVEQLRHANL-VKKLEQKLSFAERKLRRA 607
Query: 573 EKLLAELEEE-RPEQYEVDKEGITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVENMHLH 631
EK L ++E +P +Y+ D E IT+EER+M RK+GLRMKAFLL+GRRGVFDGT+ENMHLH
Sbjct: 608 EKALMKVESFLKPSEYKADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTIENMHLH 667
Query: 632 WKHRELVKIISKQRKIEAALQEARTLEVESGGILVAVERVNKGYAIILYRGKNYERPACL 691
WK+RELVKII K + E + A LE ESGG+LV+V++V+KGY++I+YRGK+Y+RP+ L
Sbjct: 668 WKYRELVKIIVKAKTFEQVKKIALALEAESGGVLVSVDKVSKGYSVIVYRGKDYQRPSTL 727
Query: 692 RPKTLLTKREAMKRSLEAQRRQSLKLHVLELTRNIEKLK-----LQLVKDKEANSLETID 746
RPK LLTKR+A+ RS+E QR ++L H+ L + +++ ++ VKDK +L
Sbjct: 728 RPKNLLTKRKALARSIELQRHEALMNHISTLQSKVGRIRSEIEQMEKVKDKGDEALYDKL 787
Query: 747 ESILP 751
+S P
Sbjct: 788 DSAYP 792
>gi|224118814|ref|XP_002317913.1| predicted protein [Populus trichocarpa]
gi|222858586|gb|EEE96133.1| predicted protein [Populus trichocarpa]
Length = 806
Score = 489 bits (1260), Expect = e-135, Method: Compositional matrix adjust.
Identities = 299/738 (40%), Positives = 426/738 (57%), Gaps = 87/738 (11%)
Query: 32 SLQNP------EKPSIFVISCSKTQNPLTQSETRVQNDTTSAIQRIADKLRSLGIVEQTT 85
S++NP EKP F S K QN AI+RI +LR+LG+
Sbjct: 74 SIKNPPSEVSQEKPHYF--SNDKGQN---------------AIERIVLRLRNLGL----- 111
Query: 86 SKDDTLNPEPETRATDNAGEIFIPLPHRIPKYRVGHTIDDSWSTPENPVPVPGTGA---- 141
DD E + N G + + R+G + W P+ V G+
Sbjct: 112 GSDDEDELEGLEGSEINGGGL-------TGEERLGDLLKREWVRPDTVVFSNDEGSDSDE 164
Query: 142 AIVRYNQLNKEVGRQKWLAKNSKMNEKEKEVPTLAELKLSGKELRRLRTLGIGLRKKLKI 201
+++ + + +E G + ++ + PTLAEL + +ELRRLR +G+ +R+++ I
Sbjct: 165 SVLPWER--EERGAVEMEGGIESGRKRRGKAPTLAELTIEDEELRRLRRMGMFIRERISI 222
Query: 202 GKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRTHDSLERKTGGLVVWRSGSKIIL 261
KAGIT ++ IH+RWR E+V++ ++ +MK H+ +ER+TGGLV+WR+GS +++
Sbjct: 223 PKAGITNAVLENIHDRWRKEELVRLKFHEVLAHDMKTAHEIVERRTGGLVIWRAGSVMVV 282
Query: 262 YRGADYKYPYFLADESSTDGASSDDLPNQL--VDDEGLDETKTHSSGADSAKP-SGQSPT 318
+RG +Y+ P P++L D EG S DS S T
Sbjct: 283 FRGTNYQGP-----------------PSKLQPADREGDALFVPDVSSTDSVMTRSSNIAT 325
Query: 319 NKKVQQTLIHSVGSPDKLRYQLPGEAELVEEADRLLDGLGPRFTDWWGYDPQPVDADLLP 378
+ + L+ + P + EAEL + LLD LGPRF +WWG PVDADLLP
Sbjct: 326 SSSEKSKLVMRITEPTE--NMTEEEAEL----NSLLDDLGPRFEEWWGTGLLPVDADLLP 379
Query: 379 ATVPGYRRPFRLLPYGVQPKLTNDEMTTLRRLGRPLPCHFALGRNRNLQGLAAAIVKLWE 438
VP Y+ PFRLLP G++ +LTN EMT +R+L + LPCHFALGRNRN QGLA AI+KLWE
Sbjct: 380 PKVPCYKTPFRLLPVGMRARLTNAEMTNMRKLAKALPCHFALGRNRNHQGLAVAILKLWE 439
Query: 439 KCEIAKIAVKRGAQNTNSEMMAQELKRLTGGTLLSRDREFIVFYRGKDFLPPAASSAIEE 498
K +AKIAVKRG QNTN+++MA ELK LTGG LL R++ +IV +RGKDFLP + ++A+ E
Sbjct: 440 KSLVAKIAVKRGIQNTNNKLMADELKMLTGGVLLLRNKYYIVIFRGKDFLPQSVAAALAE 499
Query: 499 RRK--------HEFSTSNDSKEEPELGNRHDNSGDNTQDEF---------GCTNDQKSTM 541
R++ E SN + P G + T EF + +++ M
Sbjct: 500 RQEVTKQIQDVEERVRSNSVEAAPS-GEDEGKALAGTLAEFYEAQARWGRDISTEEREKM 558
Query: 542 HSEQKERRSAEVAIRRTNIRLSRVLEKKAEAEKLLAELEEER-PEQYEVDKEGITEEERY 600
E + ++A + ++RT +L+ KK AE LL+++E P + D+E I+EEER
Sbjct: 559 IEEASKAKTARL-VKRTEHKLAIAQAKKLRAESLLSKIETTMVPSGPDFDQETISEEERV 617
Query: 601 MLRKVGLRMKAFLLMGRRGVFDGTVENMHLHWKHRELVKIISKQRKIEAALQEARTLEVE 660
M R+VGLRMKA+L +G RGVFDG +ENMHLHWKHRELVK+ISKQ+ + A+ LE E
Sbjct: 618 MFRRVGLRMKAYLPLGIRGVFDGVIENMHLHWKHRELVKLISKQKTLAFVEDTAKLLEYE 677
Query: 661 SGGILVAVERVNKGYAIILYRGKNYERPACLRPKTLLTKREAMKRSLEAQRRQSLKLHVL 720
SGG+LVA+ERV KG+A+I YRGKNY RP +RP+ LLTK +A+KRS+ QR ++L H+
Sbjct: 678 SGGVLVAIERVPKGFALIYYRGKNYRRPISIRPRNLLTKAKALKRSVAMQRHEALSQHIF 737
Query: 721 ELTRNIEKLKLQLVKDKE 738
EL +NIE++ ++ KE
Sbjct: 738 ELEKNIEEMVKEMGLSKE 755
>gi|15229636|ref|NP_188468.1| CRS1 / YhbY (CRM) domain-containing protein [Arabidopsis thaliana]
gi|11994102|dbj|BAB01105.1| unnamed protein product [Arabidopsis thaliana]
gi|17380904|gb|AAL36264.1| unknown protein [Arabidopsis thaliana]
gi|332642570|gb|AEE76091.1| CRS1 / YhbY (CRM) domain-containing protein [Arabidopsis thaliana]
Length = 848
Score = 487 bits (1254), Expect = e-134, Method: Compositional matrix adjust.
Identities = 271/592 (45%), Positives = 369/592 (62%), Gaps = 50/592 (8%)
Query: 165 MNEKEKEVPTLAELKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVV 224
M ++ P+LAEL + ELRRLR G+ LR ++ I KAG+T+ ++ I++ WR E+V
Sbjct: 228 MQKRRARAPSLAELTVEDSELRRLRRDGMYLRVRINIPKAGLTQAVMEKIYDTWRKEELV 287
Query: 225 KIVCEDLCRLNMKRTHDSLERKTGGLVVWRSGSKIILYRGADYKYPYFLADESSTDGASS 284
++ ++ +MK H+ +ER+TGG+V+WR+GS +++YRG DYK P ++
Sbjct: 288 RLKFHEVLARDMKTAHEIVERRTGGMVIWRAGSVMVVYRGLDYKGPPVIS---------- 337
Query: 285 DDLPNQLVDDEGLDETKTHSSGADSAKPSGQSPTNKKVQQTLIHSVGSP---DKLRYQLP 341
NQ+ + SS D A TN K Q+ + P + +R +
Sbjct: 338 ----NQMAGPKETLFVPDVSSAGDEA-------TNAKDNQSAPLVIKDPIIKNPIRKENM 386
Query: 342 GEAELVEEADRLLDGLGPRFTDWWGYDPQPVDADLLPATVPGYRRPFRLLPYGVQPKLTN 401
E E+ E + LLD LGPRF +WWG PVDADLLP T+PGY+ PFRLLP G++ LTN
Sbjct: 387 TEEEV--EFNSLLDSLGPRFQEWWGTGVLPVDADLLPPTIPGYKTPFRLLPTGMRSNLTN 444
Query: 402 DEMTTLRRLGRPLPCHFALGRNRNLQGLAAAIVKLWEKCEIAKIAVKRGAQNTNSEMMAQ 461
EMT LR++G+ LPCHFALGRNRN QGLAAAI+++WEK IAKIAVKRG QNTN+++MA
Sbjct: 445 AEMTNLRKIGKTLPCHFALGRNRNHQGLAAAILQIWEKSLIAKIAVKRGIQNTNNKLMAD 504
Query: 462 ELKRLTGGTLLSRDREFIVFYRGKDFLPPAASSAIEERRKHEFSTSNDSKEEPELGNRHD 521
E+K LTGG LL R++ +IV YRGKDFLP + ++ + ER E + EE + NR
Sbjct: 505 EVKTLTGGVLLLRNKYYIVIYRGKDFLPSSVAATLAER--QELTKEIQDVEE-RVRNREI 561
Query: 522 NS----GDNTQDEFG---------------CTNDQKSTMHSEQKERRSAEVAIRRTNIRL 562
+ GD E G T D + M E +A V ++R +L
Sbjct: 562 EAVQPVGDKVPAEAGTLAEFYEAQARWGKEITPDHREKMIEEASRVANARV-VKRIQHKL 620
Query: 563 SRVLEKKAEAEKLLAELEEER-PEQYEVDKEGITEEERYMLRKVGLRMKAFLLMGRRGVF 621
+ K AEKLL+++E P + D+E I+EEER M RKVGL+MKA+L +G RGVF
Sbjct: 621 NLAQSKFQRAEKLLSKIEASMIPNGPDYDQEVISEEERAMFRKVGLKMKAYLPIGIRGVF 680
Query: 622 DGTVENMHLHWKHRELVKIISKQRKIEAALQEARTLEVESGGILVAVERVNKGYAIILYR 681
DG +ENMHLHWKHRELVK+ISKQ+ + AR LE ESGG+LVA+E+V KG+A+I YR
Sbjct: 681 DGVIENMHLHWKHRELVKLISKQKNQAFVEETARLLEYESGGVLVAIEKVPKGFALIYYR 740
Query: 682 GKNYERPACLRPKTLLTKREAMKRSLEAQRRQSLKLHVLELTRNIEKLKLQL 733
GKNY RP LRP+ LLTK +A+KRS+ QR ++L H+ EL R IE+++ QL
Sbjct: 741 GKNYRRPISLRPRNLLTKAKALKRSIAMQRHEALSQHISELERTIEQMQSQL 792
>gi|357128578|ref|XP_003565949.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Brachypodium distachyon]
Length = 782
Score = 486 bits (1252), Expect = e-134, Method: Compositional matrix adjust.
Identities = 289/699 (41%), Positives = 403/699 (57%), Gaps = 88/699 (12%)
Query: 68 IQRIADKLRSLGIVEQTTSKDDTLNPEPETRATDNAGEIFIPLPHRIPKYRVGHTIDDSW 127
I RI +LR+LG+ + DD EP AT G K R+G +D SW
Sbjct: 89 IDRIVHRLRNLGL----GTDDD----EPSAAATPLNG-----------KERLGDLLDRSW 129
Query: 128 STPENPVPVPGTGAAIVRYNQ-------LNKEVGRQKWLAKNSKMNEKEKEVPTLAELKL 180
+ P+ A++ + + +++E G K K + P+LAEL +
Sbjct: 130 ARPDRHFAASSFDQAVLPWERDQDTDGGMDEEEGGAK---------RKRVKAPSLAELTM 180
Query: 181 SGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKI-VCEDLCRLNMKRT 239
ELRRLR +G+ LR ++ + KAG+T+ + IH+ WR +E+V++ EDL +MK
Sbjct: 181 DDAELRRLRGMGMTLRDRITVPKAGVTQAVTEKIHDAWRKSELVRLKFHEDLAN-DMKTA 239
Query: 240 HDSLERKTGGLVVWRSGSKIILYRGADYKYPYFLADESSTDGASSDDLPNQLVDDEGLDE 299
H+ +ER+TGGL++WR+GS +++YRG +Y P + LD
Sbjct: 240 HELVERRTGGLIIWRAGSVMVVYRGNNYTRP---------------------TKSQTLDG 278
Query: 300 TKTHSSGADSAK--PSGQSPTNKKVQQTLIHSVGSPDKL-RYQLPGEAELVEEA---DRL 353
T + G D+ P SP Q + D L R + ++ EE +++
Sbjct: 279 TSSTRKGEDNTLFIPDASSPAENDNQGKDL--TAQHDNLSRLNIHNTDDMTEEELEFNQM 336
Query: 354 LDGLGPRFTDWWGYDPQPVDADLLPATVPGYRRPFRLLPYGVQPKLTNDEMTTLRRLGRP 413
LD LGPRF DWWG PVDADLLP T+PGY+ PFRLLP G++ LTN E+T LR+L R
Sbjct: 337 LDELGPRFVDWWGTGILPVDADLLPQTIPGYKAPFRLLPTGMRTSLTNAELTNLRKLARS 396
Query: 414 LPCHFALGRNRNLQGLAAAIVKLWEKCEIAKIAVKRGAQNTNSEMMAQELKRLTGGTLLS 473
LPCHFALGRNRN QGLA+AI+KLWEK + KIAVKRG QNTN+E+M+ E+K+LTGGTLL
Sbjct: 397 LPCHFALGRNRNHQGLASAIIKLWEKSLVVKIAVKRGIQNTNNELMSDEIKKLTGGTLLL 456
Query: 474 RDREFIVFYRGKDFLPPAASSAIEERRKHEFSTSNDSKE--------EPELG-NRHDNSG 524
R++ FIV YRGKDFLP + + A+ ER + N ++ PE G + H G
Sbjct: 457 RNKYFIVIYRGKDFLPQSVAVALAEREELTKDIQNVEEQRRCTPIAHSPEDGFDGHALVG 516
Query: 525 DNTQDEFGCTNDQKSTMHSEQKERRSA------EVAIRRTNIRLSRVLEKKAEAEKLLAE 578
+ + + EQ+E + A E RR +LS K A KLL++
Sbjct: 517 TLAEFQEAQARWGRDVTSKEQEEMKEASSRLEKEKIFRRLEHKLSIAQAKIHRAGKLLSK 576
Query: 579 LEEE----RPEQYEVDKEGITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVENMHLHWKH 634
+E P D+E IT+EER + R++GL+MKA+L +G RGVFDG +ENMHLHWKH
Sbjct: 577 IEASMILANPSD---DREMITDEERSVFRRIGLKMKAYLPVGIRGVFDGVIENMHLHWKH 633
Query: 635 RELVKIISKQRKIEAALQEARTLEVESGGILVAVERVNKGYAIILYRGKNYERPACLRPK 694
RE+VK+I+KQ+ + + AR LE ESGGILVAVERV KGYA+I YRGKNY RP +RP+
Sbjct: 634 REVVKLITKQKTLAFVNETARLLEYESGGILVAVERVPKGYALIFYRGKNYRRPINIRPR 693
Query: 695 TLLTKREAMKRSLEAQRRQSLKLHVLELTRNIEKLKLQL 733
LLTK +A+KR++ QR ++L H+ +L N++++K L
Sbjct: 694 NLLTKAKALKRAVAMQRHEALSQHIAQLESNMKQMKFDL 732
>gi|242071513|ref|XP_002451033.1| hypothetical protein SORBIDRAFT_05g022980 [Sorghum bicolor]
gi|241936876|gb|EES10021.1| hypothetical protein SORBIDRAFT_05g022980 [Sorghum bicolor]
Length = 895
Score = 486 bits (1251), Expect = e-134, Method: Compositional matrix adjust.
Identities = 272/585 (46%), Positives = 368/585 (62%), Gaps = 42/585 (7%)
Query: 173 PT-LAELKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDL 231
PT +AEL L ELRRLR I ++ + K+G AG+T IV I E+W+ EVV++
Sbjct: 166 PTWMAELTLPAAELRRLRHAAIRIKSRTKVGGAGVTREIVEKIKEKWKTEEVVRVKVSGT 225
Query: 232 CRLNMKRTHDSLERKTGGLVVWRSGSKIILYRGADYKYPYFLADESSTDGASSDDLPNQL 291
LNM+ H+ LERKTGGLV+WRSG+ + LYRG DY P + S P +
Sbjct: 226 PALNMRLFHEILERKTGGLVIWRSGTSVSLYRGVDYDEPETTKGSKKNSQSLSMKSPIKG 285
Query: 292 VDDEGLDETKTHSSGADSAKPSGQSPTNKKVQQTLIHSVGSPDKLRYQLPGEAELVEEAD 351
+ L T+ +S D P L+ + G +++ Q P E + +E D
Sbjct: 286 SPNPPLPPTEKANSVQDRNGP-------------LVSNAGK-EEIVVQAP-EIKYEDEID 330
Query: 352 RLLDGLGPRFTDWWGYDPQPVDADLLPATVPGYRRPFRLLPYGVQPKLTNDEMTTLRRLG 411
+LLD LGPR+TDW G DP PVDADLLPATVPGY+ PFR+LPYGV+P L+ + T LRRL
Sbjct: 331 KLLDELGPRYTDWPGSDPLPVDADLLPATVPGYKPPFRVLPYGVRPSLSRMDTTNLRRLA 390
Query: 412 RPLPCHFALGRNRNLQGLAAAIVKLWEKCEIAKIAVKRGAQNTNSEMMAQELKRLTGGTL 471
R LP HFALGR+R LQGLA A+VKLWEK IAK+A+KRG Q T SE MA+++K+LTGG +
Sbjct: 391 RGLPPHFALGRSRQLQGLANAMVKLWEKSSIAKVALKRGVQLTTSERMAEDIKKLTGGVM 450
Query: 472 LSRDREFIVFYRGKDFLPPAASSAI--------------EERRKHE--FSTSNDSKEEPE 515
LSR+ EFIVFYRGKDFL + + E RRK FS+S + +P
Sbjct: 451 LSRNNEFIVFYRGKDFLSSELAEVLLERERLAKSLQDEEEARRKAASYFSSSAEKYVQPT 510
Query: 516 LGNRHDNSGDNTQDEFGCTNDQKSTMHSEQKERRSAEVA-----IRRTNIRLSRVLEKKA 570
+ + + ++G D+ + E K R+ E A +R+ +LS +K
Sbjct: 511 VAGTLGETLE-ANSKYGTKLDE----NHEDKMARTVEAARHADLVRKLEWKLSLAQKKME 565
Query: 571 EAEKLLAELEEERPEQYEVDKEGITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVENMHL 630
+AE++L ++E + E IT+EER+M RK+GLRMKAFLL+GRRGVFDGT+ENMHL
Sbjct: 566 KAERVLGKVETALRPTEDSRPETITDEERFMFRKLGLRMKAFLLLGRRGVFDGTIENMHL 625
Query: 631 HWKHRELVKIISKQRKIEAALQEARTLEVESGGILVAVERVNKGYAIILYRGKNYERPAC 690
HWK+RELVKI+ K + + A +LE ESGGILV+V++V+KGYAI+++RGKNY RP+
Sbjct: 626 HWKYRELVKILVKAKSFADVKRIALSLEAESGGILVSVDKVSKGYAIVVFRGKNYRRPSS 685
Query: 691 LRPKTLLTKREAMKRSLEAQRRQSLKLHVLELTRNIEKLKLQLVK 735
LRP+ LL+KR+A+ RS+E QR Q+L H +L R + +LK +LV+
Sbjct: 686 LRPRNLLSKRKALARSIELQRHQALSRHFAKLNRKVAQLKAELVQ 730
Score = 41.2 bits (95), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 48/88 (54%), Gaps = 2/88 (2%)
Query: 934 LSNRDRLLLRKQALRMKKRPVLAVGRSNIVTGVAKAIKAHFEKYPLAIVNVKGRAKGTSV 993
LS D LR+ A + P A+GRS + G+A A+ +EK +A V +K + T+
Sbjct: 378 LSRMDTTNLRRLARGLP--PHFALGRSRQLQGLANAMVKLWEKSSIAKVALKRGVQLTTS 435
Query: 994 QEVVAKLEEATGAVLVSQEPSKVILYRG 1021
+ + +++ TG V++S+ ++ YRG
Sbjct: 436 ERMAEDIKKLTGGVMLSRNNEFIVFYRG 463
>gi|77551737|gb|ABA94534.1| CRS1/YhbY domain containing protein, expressed [Oryza sativa
Japonica Group]
Length = 886
Score = 486 bits (1250), Expect = e-134, Method: Compositional matrix adjust.
Identities = 272/589 (46%), Positives = 372/589 (63%), Gaps = 54/589 (9%)
Query: 175 LAELKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRL 234
+AEL L ELRRLR G+ L+ ++K+G AG+T IV I +RWR+ EVV+I L
Sbjct: 171 MAELTLPEAELRRLRHAGMRLKSRIKVGGAGVTREIVERIRDRWRNDEVVRIKVTGTPAL 230
Query: 235 NMKRTHDSLERKTGGLVVWRSGSKIILYRGADYKYPYFLADESSTDGASSDDLPNQLVDD 294
NM+ H+ LERKTGGLV+WRSG+ + LYRG Y P T G S +
Sbjct: 231 NMRLFHEILERKTGGLVIWRSGTSVSLYRGVAYDIP------EPTKGTSKN--------- 275
Query: 295 EGLDETKTHSSGADSAKPSGQSPT-NKKVQQT-----LIHSVGSPDKLRYQLPGEAELVE 348
T+T + +P G S N+KV + + S D L +P E + +
Sbjct: 276 -----TQTLGMKSSIKEPPGHSLLPNEKVNEMQDNNGALVSNAEKDTLVEPVP-EIKYED 329
Query: 349 EADRLLDGLGPRFTDWWGYDPQPVDADLLPATVPGYRRPFRLLPYGVQPKLTNDEMTTLR 408
E D+LLD LGPR+ DW DP PVDADLLPATVPGY+ PFR+LPYGV+P L+ + T LR
Sbjct: 330 EIDKLLDELGPRYDDWPRPDPSPVDADLLPATVPGYKPPFRVLPYGVRPSLSRRDTTNLR 389
Query: 409 RLGRPLPCHFALGRNRNLQGLAAAIVKLWEKCEIAKIAVKRGAQNTNSEMMAQELKRLTG 468
RL R LP HFALGR+R LQGLAAA+VKLWEK IAKIA+KRG Q T SE MA+++K+LTG
Sbjct: 390 RLARGLPPHFALGRSRQLQGLAAAMVKLWEKSSIAKIALKRGVQLTTSERMAEDIKKLTG 449
Query: 469 GTLLSRDREFIVFYRGKDFLPPAASSAIEERRK----------------HEFSTSNDSKE 512
G +LSR+ +F+VFYRGKDFL P + + ER + FS+ ++
Sbjct: 450 GVMLSRNNDFMVFYRGKDFLSPELAEKLLERERWAKSLQDEEQARLNAASSFSSRTEAPV 509
Query: 513 EPELGNRHDNSGDNTQDEFGCTNDQKSTMHSEQKERRSAEVA-----IRRTNIRLSRVLE 567
EP + + + ++G D+ + E K R+ E A +R+ +L +
Sbjct: 510 EPTVAGTLGETLE-ANSKYGNKLDE----NYENKMTRTVEAARHADLVRKLEWKLQLAQK 564
Query: 568 KKAEAEKLLAELEEE-RPEQYEVDKEGITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVE 626
K +AE++L ++E +P + E IT+EER+M RK+GLRMKAFLL+GRRGVFDGT+E
Sbjct: 565 KIEKAERVLGKVETALKPTEGIQPPETITDEERFMFRKLGLRMKAFLLLGRRGVFDGTIE 624
Query: 627 NMHLHWKHRELVKIISKQRKIEAALQEARTLEVESGGILVAVERVNKGYAIILYRGKNYE 686
NMHLHWK+RELVKI+ K + + A +LE ESGGILV+V++V+KGYAI+++RGK+Y
Sbjct: 625 NMHLHWKYRELVKILVKAKSFGDVKKIALSLEAESGGILVSVDKVSKGYAIVVFRGKDYA 684
Query: 687 RPACLRPKTLLTKREAMKRSLEAQRRQSLKLHVLELTRNIEKLKLQLVK 735
RP+ LRP+ LL+KR+A+ RS+E QRR++L H+ L R ++KLK +L++
Sbjct: 685 RPSKLRPRNLLSKRKALARSIEIQRREALSHHIATLNRRVKKLKAELLQ 733
Score = 42.7 bits (99), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 49/88 (55%), Gaps = 2/88 (2%)
Query: 934 LSNRDRLLLRKQALRMKKRPVLAVGRSNIVTGVAKAIKAHFEKYPLAIVNVKGRAKGTSV 993
LS RD LR+ A + P A+GRS + G+A A+ +EK +A + +K + T+
Sbjct: 380 LSRRDTTNLRRLARGLP--PHFALGRSRQLQGLAAAMVKLWEKSSIAKIALKRGVQLTTS 437
Query: 994 QEVVAKLEEATGAVLVSQEPSKVILYRG 1021
+ + +++ TG V++S+ ++ YRG
Sbjct: 438 ERMAEDIKKLTGGVMLSRNNDFMVFYRG 465
>gi|168024308|ref|XP_001764678.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162683972|gb|EDQ70377.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 625
Score = 485 bits (1248), Expect = e-134, Method: Compositional matrix adjust.
Identities = 282/609 (46%), Positives = 379/609 (62%), Gaps = 56/609 (9%)
Query: 162 NSKMNEKEKEV--------PTLAELKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNG 213
+ ++NE+E +V P++AEL + EL+RLRTLG+ L+ +LKIG+ G+T GIV
Sbjct: 7 HEEVNEEEGQVAKKQRVRSPSMAELTIPDFELKRLRTLGLQLQGRLKIGRLGVTPGIVEA 66
Query: 214 IHERWRHAEVVKIVCEDLCRLNMKRTHDSLERKTGGLVVWRSGSKIILYRGADYKYPYFL 273
IHERWR E+ K+ C+ +NMK+ H+ LER TGGLV+WRSGS ++YRG DY +P
Sbjct: 67 IHERWRTCEIAKVKCDAPLSMNMKKAHEDLERLTGGLVIWRSGSAAVVYRGKDYVHPSVR 126
Query: 274 ADESSTDGASSDDLPNQLVDDEGLDETKTHSSGADSAKPSGQSPTNKKVQQTLIHSVGSP 333
E + L L +DE +E ++ T SV
Sbjct: 127 EREEREERERRKLLSLNLDEDEEREE---------------------QIDSTSTVSVERE 165
Query: 334 DKLRYQLPGEAELVEEADRLLDGLGPRFTDWWGYDPQPVDADLLPATVPGYRRPFRLLPY 393
L+ Q + +VEE +LDGLGPR+ DW G P PVD DLL ++ ++RPFRLLPY
Sbjct: 166 AYLKKQ-ENDLRMVEE---ILDGLGPRYADWTGRRPVPVDGDLLLSSDFEFKRPFRLLPY 221
Query: 394 GVQPKLTNDEMTTLRRLGRPLPCHFALGRNRNLQGLAAAIVKLWEKCEIAKIAVKRGAQN 453
GV+PKL N E+T LR L RP+P H LG+NR L G+AAAIVKLWE+ EI KI VKRG QN
Sbjct: 222 GVKPKLNNFELTELRHLARPIPPHIVLGKNRGLDGVAAAIVKLWERSEIVKIGVKRGVQN 281
Query: 454 TNSEMMAQELKRLTGGTLLSRDREFIVFYRGKDFLPPAASSAIEER---------RKHEF 504
T++E MA+ELKRLTGGTLLSRD+EFIVF+RGKDFLPPA +A+EER + F
Sbjct: 282 TSNERMAEELKRLTGGTLLSRDKEFIVFHRGKDFLPPAVQAALEERDQMAKALQEEEERF 341
Query: 505 STSNDSK-----EEP------ELGNRHDNSGDNTQDEFGCTNDQKSTMHSEQKERRSAEV 553
S+ EE ++G + + E +D+ ++R+ A+
Sbjct: 342 RMGGRSRPVQVVEETRYQGVYKVGTLEEALETRAKWEAWLDSDEARKERIAARKRKRAQ- 400
Query: 554 AIRRTNIRLSRVLEKKAEAEKLLAELEEE-RPEQYEVDKEGITEEERYMLRKVGLRMKAF 612
A R +L+ L+K A+ L ++E + P +DKE +++ ERYM RK+GL+MKAF
Sbjct: 401 ATDRIRSKLNLALKKMERAQLELNKVEAKTTPANVTLDKEHLSDGERYMYRKLGLKMKAF 460
Query: 613 LLMGRRGVFDGTVENMHLHWKHRELVKIISKQRKIEAALQEARTLEVESGGILVAVERVN 672
LL+GRRGVF GTVENMHLHWK+RELVKI+ K EA + A+ LE ESGGILV + +
Sbjct: 461 LLLGRRGVFSGTVENMHLHWKYRELVKILVKTSLPEAE-RIAKILENESGGILVDIITTS 519
Query: 673 KGYAIILYRGKNYERPACLRPKTLLTKREAMKRSLEAQRRQSLKLHVLELTRNIEKLKLQ 732
KG AI++YRGKNY+RP+ LRP+ LLTKR+A+KRSLE QR +SL+ H+ L + IE ++
Sbjct: 520 KGQAIVMYRGKNYQRPSELRPRHLLTKRQALKRSLEMQRMESLEKHIRVLKKEIETMQAG 579
Query: 733 LVKDKEANS 741
LV + A S
Sbjct: 580 LVDGRSATS 588
>gi|224091282|ref|XP_002309217.1| predicted protein [Populus trichocarpa]
gi|222855193|gb|EEE92740.1| predicted protein [Populus trichocarpa]
Length = 977
Score = 484 bits (1245), Expect = e-133, Method: Compositional matrix adjust.
Identities = 261/580 (45%), Positives = 364/580 (62%), Gaps = 40/580 (6%)
Query: 175 LAELKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRL 234
LAE L EL+RLR + + + +++K+G GIT+ +V+ IHE+W+ EVVK+ E
Sbjct: 359 LAERMLPEHELKRLRNVALRMLERIKVGATGITQDLVDAIHEKWKLDEVVKLKFEWPLSC 418
Query: 235 NMKRTHDSLERKTGGLVVWRSGSKIILYRGADYKYPYFLADESSTDGASSDDLPNQLVDD 294
NMKRTH+ LE +TGGL++WRSGS +++YRG YK F +S T ++
Sbjct: 419 NMKRTHEILESRTGGLIIWRSGSSVVMYRGTTYK---FQCVQSYTKQ-----------NE 464
Query: 295 EGLDETKTHSSGADSAKPSGQSPTNKKVQQTLIHSVGSPDKLRY-QLPGEAELVE--EAD 351
G+D + +SA S + +++I PD +Y + + EL++ E +
Sbjct: 465 AGMDVLQYAEEATNSATSSAGMKDLARTMESII-----PDAAKYLKDLSQEELMDFSELN 519
Query: 352 RLLDGLGPRFTDWWGYDPQPVDADLLPATVPGYRRPFRLLPYGVQPKLTNDEMTTLRRLG 411
LLD LGPR+ DW G +P PVDADLLPA VPGY+ P RLLPYGV+P L+N T RRL
Sbjct: 520 HLLDELGPRYKDWCGREPLPVDADLLPAVVPGYKSPLRLLPYGVKPCLSNKNTTNFRRLA 579
Query: 412 RPLPCHFALGRNRNLQGLAAAIVKLWEKCEIAKIAVKRGAQNTNSEMMAQELKRLTGGTL 471
R P HF LGRNR LQGLA A+VKLWE+ IAKIA+KRG Q T +E+MA+ELKRLTGGTL
Sbjct: 580 RTTPPHFVLGRNRELQGLANAMVKLWERSAIAKIAIKRGVQYTRNEIMAEELKRLTGGTL 639
Query: 472 LSRDREFIVFYRGKDFLPPAASSAIEERRKHEFSTSNDSKEEPELGNRHDNSGDNTQD-- 529
LSR++E+IVFYRG DFLPP + ++ERRK F ++ + ++ + S T
Sbjct: 640 LSRNKEYIVFYRGNDFLPPVINETLKERRKLAFLYQDEEDQARQMTSAFIGSSVKTTKGP 699
Query: 530 -----------EFGCTNDQKSTMHSEQKERRSA----EVAIRRTNIRLSRVLEKKAEAEK 574
+Q S+ E+ R SA ++ +L++ K ++EK
Sbjct: 700 LVAGTLVETVAAISRWGNQPSSEDVEEMIRDSALARHASLVKHLENKLAQAKGKLKKSEK 759
Query: 575 LLAELEEE-RPEQYEVDKEGITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVENMHLHWK 633
LA+++E P + D E I++EER++ RK+GL MK +L +GRRGVFDGT+ENMHLHWK
Sbjct: 760 DLAKVQENLEPTELPTDLETISDEERFLFRKIGLSMKPYLFLGRRGVFDGTIENMHLHWK 819
Query: 634 HRELVKIISKQRKIEAALQEARTLEVESGGILVAVERVNKGYAIILYRGKNYERPACLRP 693
+RELVKII +++ I A +LE ESGG+LV+V+R KGYAII+YRGKNY RP +RP
Sbjct: 820 YRELVKIIVERKGIAQVKHIAISLEAESGGVLVSVDRTTKGYAIIVYRGKNYMRPQAMRP 879
Query: 694 KTLLTKREAMKRSLEAQRRQSLKLHVLELTRNIEKLKLQL 733
+ LLT+R+A+ RS+E QR ++LK H+ +L IE + +L
Sbjct: 880 ENLLTRRQALARSVELQRYEALKHHITDLQERIELVTSEL 919
Score = 42.0 bits (97), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 82/182 (45%), Gaps = 18/182 (9%)
Query: 594 ITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVENMHLHWKHRELVKIISKQRKIEAAL-- 651
+ E E LR V LRM + +G G+ V+ +H WK E+VK+ K E L
Sbjct: 364 LPEHELKRLRNVALRMLERIKVGATGITQDLVDAIHEKWKLDEVVKL-----KFEWPLSC 418
Query: 652 ---QEARTLEVESGGILVAVERVNKGYAIILYRGKNYERPACLRPKTLLTK--REAMKRS 706
+ LE +GG+++ G ++++YRG Y + C++ T + + ++ +
Sbjct: 419 NMKRTHEILESRTGGLIIW----RSGSSVVMYRGTTY-KFQCVQSYTKQNEAGMDVLQYA 473
Query: 707 LEAQRRQSLKLHVLELTRNIEKLKLQLVKD-KEANSLETIDESILPLVKEEIGDMQPAEC 765
EA + + +L R +E + K K+ + E +D S L + +E+G C
Sbjct: 474 EEATNSATSSAGMKDLARTMESIIPDAAKYLKDLSQEELMDFSELNHLLDELGPRYKDWC 533
Query: 766 MR 767
R
Sbjct: 534 GR 535
>gi|297830494|ref|XP_002883129.1| EMB1865 [Arabidopsis lyrata subsp. lyrata]
gi|297328969|gb|EFH59388.1| EMB1865 [Arabidopsis lyrata subsp. lyrata]
Length = 846
Score = 483 bits (1244), Expect = e-133, Method: Compositional matrix adjust.
Identities = 270/592 (45%), Positives = 367/592 (61%), Gaps = 50/592 (8%)
Query: 165 MNEKEKEVPTLAELKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVV 224
M + P+LAEL + ELRRLR G+ LR ++ I KAG+T+ ++ I++ WR E+V
Sbjct: 228 MKKGRARAPSLAELTVEDSELRRLRRDGMYLRVRINIPKAGLTQAVMEKIYDTWRKEELV 287
Query: 225 KIVCEDLCRLNMKRTHDSLERKTGGLVVWRSGSKIILYRGADYKYPYFLADESSTDGASS 284
++ ++ +MK H+ +ER+TGG+V+WR+GS +++YRG DYK P ++
Sbjct: 288 RLKFHEVLARDMKTAHEIVERRTGGMVIWRAGSVMVVYRGLDYKGPPVIS---------- 337
Query: 285 DDLPNQLVDDEGLDETKTHSSGADSAKPSGQSPTNKKVQQTLIHSVGSP---DKLRYQLP 341
NQ+ + SS D A TN K Q+ + P + +R +
Sbjct: 338 ----NQMAGPKETLFVPDVSSAGDEA-------TNAKDNQSPPSEIKDPIIKNPIRKENM 386
Query: 342 GEAELVEEADRLLDGLGPRFTDWWGYDPQPVDADLLPATVPGYRRPFRLLPYGVQPKLTN 401
E E E + LLD LGPRF +WWG PVDADLLP T+PGY+ PFRLLP G++ LTN
Sbjct: 387 TEEE--AEFNSLLDSLGPRFQEWWGTGVLPVDADLLPPTIPGYKTPFRLLPTGMRSNLTN 444
Query: 402 DEMTTLRRLGRPLPCHFALGRNRNLQGLAAAIVKLWEKCEIAKIAVKRGAQNTNSEMMAQ 461
EMT LR++G+ LPCHFALGRNRN QGLAAAI+++WEK IAKIAVKRG QNTN+++MA
Sbjct: 445 AEMTNLRKIGKTLPCHFALGRNRNHQGLAAAILQIWEKSLIAKIAVKRGIQNTNNKLMAD 504
Query: 462 ELKRLTGGTLLSRDREFIVFYRGKDFLPPAASSAIEERRKHEFSTSNDSKEEPELGNRHD 521
E+K LTGG LL R++ +IV YRGKDFLP + ++ + ER E + EE + NR
Sbjct: 505 EVKALTGGVLLLRNKYYIVIYRGKDFLPSSVAATLAER--QELTKEIQDVEE-RVRNREI 561
Query: 522 NS----GDNTQDEFG---------------CTNDQKSTMHSEQKERRSAEVAIRRTNIRL 562
+ GD E G T D + M E +A V ++R +L
Sbjct: 562 EAVQPVGDKVPAEAGTLAEFYEAQARWGKEITPDHREKMIEEASRVANARV-VKRIQHKL 620
Query: 563 SRVLEKKAEAEKLLAELEEER-PEQYEVDKEGITEEERYMLRKVGLRMKAFLLMGRRGVF 621
+ K AEKLL+++E P + D+E I+EEER M RKVGL+MKA+L +G RGVF
Sbjct: 621 NLAQSKFQRAEKLLSKIEASMIPNGPDYDQEVISEEERAMFRKVGLKMKAYLPLGIRGVF 680
Query: 622 DGTVENMHLHWKHRELVKIISKQRKIEAALQEARTLEVESGGILVAVERVNKGYAIILYR 681
DG +ENMHLHWKHRELVK+ISKQ+ + AR LE ESGG+LVA+E+V KG+A+I YR
Sbjct: 681 DGVIENMHLHWKHRELVKLISKQKNLAFVEDTARLLEYESGGVLVAIEKVPKGFALIYYR 740
Query: 682 GKNYERPACLRPKTLLTKREAMKRSLEAQRRQSLKLHVLELTRNIEKLKLQL 733
GKNY RP LRP+ LLTK +A+KRS+ QR ++L H+ EL R IE+++ +L
Sbjct: 741 GKNYRRPISLRPRNLLTKAKALKRSIAMQRHEALSQHISELERTIEQMQSEL 792
>gi|154986387|gb|ABS89147.1| CFM2 alternative polyadenylation form 2 [Zea mays]
Length = 783
Score = 479 bits (1234), Expect = e-132, Method: Compositional matrix adjust.
Identities = 240/392 (61%), Positives = 298/392 (76%), Gaps = 6/392 (1%)
Query: 323 QQTLIHSVGSPDKLRYQLPGEAELVEEADRLLDGLGPRFTDWWGYDPQPVDADLLPATVP 382
+ +L+ VGS +K R QLPGE +L EEAD+LLDGLGPRF+ WWGYDP PVDADLLPA VP
Sbjct: 350 RSSLVAGVGSQNKFRLQLPGEVKLAEEADKLLDGLGPRFSGWWGYDPVPVDADLLPAIVP 409
Query: 383 GYRRPFRLLPYGVQPKLTNDEMTTLRRLGRPLPCHFALGRNRNLQGLAAAIVKLWEKCEI 442
GYRRPFRLLP GV PKLT+ EMT LRRL LP H+ALGR+ NLQGLAA+++KLWE+CE+
Sbjct: 410 GYRRPFRLLPSGVPPKLTDREMTILRRLAHALPFHYALGRSSNLQGLAASMIKLWERCEV 469
Query: 443 AKIAVKRGAQNTNSEMMAQELKRLTGGTLLSRDREFIVFYRGKDFLPPAASSAIEERRKH 502
AKIA+KR A NT+SE++ +E+K LTGGTLLSRD+E IVFYRGKDFLPPA S AIE+RRK
Sbjct: 470 AKIALKRDAHNTDSELITEEVKELTGGTLLSRDKESIVFYRGKDFLPPAVSLAIEKRRK- 528
Query: 503 EFSTSNDSKEEPELGNRHDNSGDN---TQDEFGCTNDQKSTMHSEQKERRSAEVAIRRTN 559
+S K +P + D+ + ++ T +E + VA +
Sbjct: 529 -LGSSTIYKAKPGIEESMPTQNDSVLKVSSDVSVHVREEGTSVTENRAGSLNTVA-KDVE 586
Query: 560 IRLSRVLEKKAEAEKLLAELEEERPEQYEVDKEGITEEERYMLRKVGLRMKAFLLMGRRG 619
RLS+ + +KA+AEKL+ ELE+ P +E I+E+ERYMLRKVGL+MK FLL+GRRG
Sbjct: 587 TRLSQAIAEKAKAEKLIEELEKASPLSKAEVRETISEDERYMLRKVGLKMKQFLLLGRRG 646
Query: 620 VFDGTVENMHLHWKHRELVKIISKQRKIEAALQEARTLEVESGGILVAVERVNKGYAIIL 679
VFDGT+ENMHLHWK+RELVKII K+ ++E ARTLE ESGGILVAVE+V+KG+AII+
Sbjct: 647 VFDGTIENMHLHWKYRELVKIICKEHRLEDVEYAARTLEAESGGILVAVEKVSKGHAIIV 706
Query: 680 YRGKNYERPACLRPKTLLTKREAMKRSLEAQR 711
YRGKNY+RP+ LRPKTLL+KR+A+KRSLE QR
Sbjct: 707 YRGKNYKRPSKLRPKTLLSKRDALKRSLENQR 738
Score = 195 bits (496), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 121/265 (45%), Positives = 158/265 (59%), Gaps = 28/265 (10%)
Query: 66 SAIQRIADKLRSLGIVEQTTSKDDTLNPEPETRATDNAGEIFIPLPHRIPKYRVGHTIDD 125
SA++R + LRSLG +E T S+ T P A + GEIF+P P ++P++RVG T+D
Sbjct: 40 SALRRXSXXLRSLGYLE-TVSEPPTPAPNKSGDAP-SPGEIFVPTPAQLPRHRVGSTLDP 97
Query: 126 SWSTPENPVPVPGTGAAIVRYNQLNKEVGRQKWLAKNSKMNEKEKEVPTLAELKLSGKEL 185
SW+T G G A RQ+ + + P+ AEL L EL
Sbjct: 98 SWAT--------GDGEA--------SSTSRQRRRGRGRDASGSPSAPPSAAELALPRDEL 141
Query: 186 RRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRTHDSLER 245
RRL+ +GI +RK+LK+GKAGITEGIVNGIHERWR+AEVVK+ CED+ +NM+RTH+ LER
Sbjct: 142 RRLQGIGIRVRKRLKVGKAGITEGIVNGIHERWRNAEVVKLRCEDVWAMNMRRTHEILER 201
Query: 246 KTGGLVVWRSGSKIILYRGADYKYPYFLADE---SSTDGASSDDLPNQLVDDEGLDETKT 302
KTGGLV+WRSGS IILYRG +Y YPYF E S D SSD + G DE +T
Sbjct: 202 KTGGLVIWRSGSTIILYRGTNYTYPYFHHSERVDSFLDKESSDQ------SNSG-DEDET 254
Query: 303 HSSGADSAKPSGQSPTNKKVQQTLI 327
S S + S ++P +Q +
Sbjct: 255 SSQHGSSHEKSSENPVVACAEQIHV 279
Score = 62.8 bits (151), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 68/113 (60%), Gaps = 7/113 (6%)
Query: 165 MNEKEKEVP-TLAELK--LSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHA 221
+ E EK P + AE++ +S E LR +G+ +++ L +G+ G+ +G + +H W++
Sbjct: 603 IEELEKASPLSKAEVRETISEDERYMLRKVGLKMKQFLLLGRRGVFDGTIENMHLHWKYR 662
Query: 222 EVVKIVCEDLCRLNMKRTHDSLERKTGGLVVW----RSGSKIILYRGADYKYP 270
E+VKI+C++ +++ +LE ++GG++V G II+YRG +YK P
Sbjct: 663 ELVKIICKEHRLEDVEYAARTLEAESGGILVAVEKVSKGHAIIVYRGKNYKRP 715
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 51/96 (53%), Gaps = 4/96 (4%)
Query: 593 GITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVENMHLHWKHRELVKIISKQRKIEAALQ 652
+ +E L+ +G+R++ L +G+ G+ +G V +H W++ E+VK+ + +
Sbjct: 135 ALPRDELRRLQGIGIRVRKRLKVGKAGITEGIVNGIHERWRNAEVVKLRCEDVWAMNMRR 194
Query: 653 EARTLEVESGGILVAVERVNKGYAIILYRGKNYERP 688
LE ++GG+++ G IILYRG NY P
Sbjct: 195 THEILERKTGGLVIW----RSGSTIILYRGTNYTYP 226
Score = 42.4 bits (98), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 52/89 (58%), Gaps = 2/89 (2%)
Query: 933 QLSNRDRLLLRKQALRMKKRPVLAVGRSNIVTGVAKAIKAHFEKYPLAIVNVKGRAKGTS 992
+L++R+ +LR+ A + A+GRS+ + G+A ++ +E+ +A + +K A T
Sbjct: 425 KLTDREMTILRRLAHALPFH--YALGRSSNLQGLAASMIKLWERCEVAKIALKRDAHNTD 482
Query: 993 VQEVVAKLEEATGAVLVSQEPSKVILYRG 1021
+ + +++E TG L+S++ ++ YRG
Sbjct: 483 SELITEEVKELTGGTLLSRDKESIVFYRG 511
Score = 42.0 bits (97), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 48/100 (48%), Gaps = 1/100 (1%)
Query: 172 VPTLAELKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCE-D 230
+P+ KL+ +E+ LR L L +G++ +G+ + + W EV KI + D
Sbjct: 418 LPSGVPPKLTDREMTILRRLAHALPFHYALGRSSNLQGLAASMIKLWERCEVAKIALKRD 477
Query: 231 LCRLNMKRTHDSLERKTGGLVVWRSGSKIILYRGADYKYP 270
+ + + ++ TGG ++ R I+ YRG D+ P
Sbjct: 478 AHNTDSELITEEVKELTGGTLLSRDKESIVFYRGKDFLPP 517
Score = 41.2 bits (95), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 32/140 (22%), Positives = 63/140 (45%), Gaps = 3/140 (2%)
Query: 392 PYGVQPKLTNDEMTTLRRLGRPLPCHFALGRNRNLQGLAAAIVKLWEKCEIAKIAVKRGA 451
P + L DE+ L+ +G + +G+ +G+ I + W E+ K+ +
Sbjct: 129 PSAAELALPRDELRRLQGIGIRVRKRLKVGKAGITEGIVNGIHERWRNAEVVKLRCE-DV 187
Query: 452 QNTNSEMMAQELKRLTGGTLLSRDREFIVFYRGKDFLPPAA--SSAIEERRKHEFSTSND 509
N + L+R TGG ++ R I+ YRG ++ P S ++ E S ++
Sbjct: 188 WAMNMRRTHEILERKTGGLVIWRSGSTIILYRGTNYTYPYFHHSERVDSFLDKESSDQSN 247
Query: 510 SKEEPELGNRHDNSGDNTQD 529
S +E E ++H +S + + +
Sbjct: 248 SGDEDETSSQHGSSHEKSSE 267
>gi|326507446|dbj|BAK03116.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 775
Score = 479 bits (1233), Expect = e-132, Method: Compositional matrix adjust.
Identities = 282/690 (40%), Positives = 405/690 (58%), Gaps = 65/690 (9%)
Query: 65 TSAIQRIADKLRSLGIVEQTTSKDDTLNPEPETRATDNAGEIFIPLPHRIPKYRVGHTID 124
+++I RI +LR+LG+ + DD EP + A + PL R R+G +D
Sbjct: 84 STSIDRIVHRLRNLGL----GTDDD----EPSSAA------VSAPLDGR---ERLGDLLD 126
Query: 125 DSWSTPENPVPVPGTGAAIVRYNQLNKEVGRQKWLAKNSKMNEKEKEVPTLAELKLSGKE 184
SW+ P+ G A++ + + + G + + K P+LAEL + E
Sbjct: 127 RSWARPDRQFAASGLDEAVLPWERDRESDGEEV-----DGVKRKRVRAPSLAELTMDDVE 181
Query: 185 LRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRTHDSLE 244
LRRLR +G+ L+ ++ + KAG+T+ I IH+ WR +E+V++ + +MK H+ +E
Sbjct: 182 LRRLRGMGMTLKDRITVPKAGVTQAITEKIHDAWRKSELVRLKFHEDHANDMKTAHELVE 241
Query: 245 RKTGGLVVWRSGSKIILYRGADYKYPYFLADESSTDGASS--DDLPNQLVDDEGLDETKT 302
R+TGGL++WR+GS +++YRG++Y P + DG SS + L G +
Sbjct: 242 RRTGGLIIWRAGSVMVVYRGSNYTRPL---KSQTLDGTSSPRKQEDSALFIPNGSSTVEN 298
Query: 303 HSSGADSAKPSGQSPTNKKVQQTLIHSVGSPDKLRYQLPGEAELVEEADRLLDGLGPRFT 362
+ G D A +P ++ + D +L E +++LD LGPRF
Sbjct: 299 DNQGKDLAAQHDNAP--------ILDLHNTEDMTEEEL--------EFNQMLDELGPRFV 342
Query: 363 DWWGYDPQPVDADLLPATVPGYRRPFRLLPYGVQPKLTNDEMTTLRRLGRPLPCHFALGR 422
DWWG PVDADLLP T+PGY+ PFR+LP G++ LTN E+T LR+L R LPCHFALGR
Sbjct: 343 DWWGTGILPVDADLLPQTIPGYKAPFRVLPTGMRTSLTNSELTNLRKLARNLPCHFALGR 402
Query: 423 NRNLQGLAAAIVKLWEKCEIAKIAVKRGAQNTNSEMMAQELKRLTGGTLLSRDREFIVFY 482
NRN QGLAAAIVKLWEK + KIAVKRG QNTN+++M+ E+K LTGGTLL R++ +IV Y
Sbjct: 403 NRNHQGLAAAIVKLWEKSLVVKIAVKRGIQNTNNKLMSDEIKNLTGGTLLLRNKYYIVIY 462
Query: 483 RGKDFLPPAASSAIEERRK--------HEFSTSNDSKEEPELGNR-HDNSGDNTQDEFGC 533
RGKDFLP + ++A+ ER + E S + PE G H G + +
Sbjct: 463 RGKDFLPTSVAAALAEREELTKDIQNLEEQRRSISIEHSPEDGFEGHALVGTLAEFQEAQ 522
Query: 534 TNDQKSTMHSEQKERRSA------EVAIRRTNIRLSRVLEKKAEAEKLLAELEEE----R 583
++ EQ+E + A E RR +LS K A KLL+++E
Sbjct: 523 ARWGRNVTSKEQQEMKEASFRSEKEKLFRRLEHKLSIAQAKIHRAGKLLSKIEASMVLAN 582
Query: 584 PEQYEVDKEGITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVENMHLHWKHRELVKIISK 643
P D+E IT EER + R++GL+MKA+L +G RGVFDG +ENMHLHWKHRE+VK+I+K
Sbjct: 583 PSD---DREMITAEERSVFRRIGLKMKAYLPVGIRGVFDGVIENMHLHWKHREVVKLITK 639
Query: 644 QRKIEAALQEARTLEVESGGILVAVERVNKGYAIILYRGKNYERPACLRPKTLLTKREAM 703
Q+ + + AR LE ESGGILVA+ERV KG+A+I YRGKNY RP +RP+ LLTK +A+
Sbjct: 640 QKTLAFVEETARLLEYESGGILVAIERVPKGHALIFYRGKNYRRPINIRPRNLLTKAKAL 699
Query: 704 KRSLEAQRRQSLKLHVLELTRNIEKLKLQL 733
KR++ QR ++L H+ +L N++++K L
Sbjct: 700 KRAVAMQRHEALSQHIDQLEINMKQMKRDL 729
>gi|356522763|ref|XP_003530015.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Glycine max]
Length = 734
Score = 478 bits (1231), Expect = e-132, Method: Compositional matrix adjust.
Identities = 270/582 (46%), Positives = 365/582 (62%), Gaps = 49/582 (8%)
Query: 173 PTLAELKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLC 232
P+LA+L L + LRRLR G+ +R+++ + KAG+T+ ++ IH+RWR E+V++ +
Sbjct: 177 PSLADLTLEDELLRRLRREGMRVRERVSVPKAGLTQEVMEKIHKRWRKEELVRLKFHEEL 236
Query: 233 RLNMKRTHDSLERKTGGLVVWRSGSKIILYRGADYKYPYFL--ADESSTDGASSDDLPNQ 290
+M++ H+ +ER+TGGLV WRSGS +++YRG DY+ P +E DG D+
Sbjct: 237 AKDMRKAHEIVERRTGGLVTWRSGSVMMVYRGIDYQGPDSQKEVNEKKGDGFFVPDV--- 293
Query: 291 LVDDEGLDETKTHSSGADSAKPSGQSPTNKKVQQTLIHSVGSPDKLRYQLPGEAELVEEA 350
S DS+ + S ++ V + H P+ + EAE E
Sbjct: 294 -------------SKREDSSTATSTSEKSEVVVREREH----PENM-----SEAE--AEY 329
Query: 351 DRLLDGLGPRFTDWWGYDPQPVDADLLPATVPGYRRPFRLLPYGVQPKLTNDEMTTLRRL 410
+ LLDGLGPRF WWG PVDADLLP TVPGY+ PFRLLP G++ +LTN EMT LR+L
Sbjct: 330 NALLDGLGPRFVGWWGTGILPVDADLLPRTVPGYKTPFRLLPTGMRSRLTNAEMTNLRKL 389
Query: 411 GRPLPCHFALGRNRNLQGLAAAIVKLWEKCEIAKIAVKRGAQNTNSEMMAQELKRLTGGT 470
+ LPCHFALGRNRN QGLA AI+KLWEK +AKIAVKRG QNTN+E+MA+ELK LTGGT
Sbjct: 390 AKSLPCHFALGRNRNHQGLACAILKLWEKSLVAKIAVKRGIQNTNNELMAEELKMLTGGT 449
Query: 471 LLSRDREFIVFYRGKDFLPPAASSAIEERRKHEFSTSNDSKEEP---------ELGNRHD 521
LL R++ FIV YRGKDF+P + ++ + ER E + E+ LG
Sbjct: 450 LLLRNKYFIVIYRGKDFVPTSVAAVLAER--EELTKQVQDVEDKVRCRAVDAIPLGQGEA 507
Query: 522 NSGDNTQDEFGCTNDQKSTMHSEQKERRSAEVAIRRTNIRLSRVLE--------KKAEAE 573
+ T EF + S ++ + E A + +L R +E KK AE
Sbjct: 508 TAQAGTLAEFYEAQARWGREISPEEREKMVEEAAKTKTAKLVRQIEHKIFIAQTKKLRAE 567
Query: 574 KLLAELEEER-PEQYEVDKEGITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVENMHLHW 632
KLLA++E P + D+E IT+EER M RKVGLRMK +L +G RGVFDG VENMHLHW
Sbjct: 568 KLLAKIEASMVPAGPDYDQETITDEERVMFRKVGLRMKPYLPLGIRGVFDGVVENMHLHW 627
Query: 633 KHRELVKIISKQRKIEAALQEARTLEVESGGILVAVERVNKGYAIILYRGKNYERPACLR 692
KHRELVK+++KQ+ + AR LE ESGGILVA+E+V+K +A+I YRGKNY+RP LR
Sbjct: 628 KHRELVKLMTKQKTVAFVEDTARLLEYESGGILVAIEKVSKEFALIYYRGKNYKRPITLR 687
Query: 693 PKTLLTKREAMKRSLEAQRRQSLKLHVLELTRNIEKLKLQLV 734
P+ LLTK +A+KR + QR ++L H+ EL + IE++K +LV
Sbjct: 688 PRNLLTKGKALKRHVAMQRHEALSQHITELEKTIEQMKKELV 729
>gi|297831030|ref|XP_002883397.1| hypothetical protein ARALYDRAFT_898801 [Arabidopsis lyrata subsp.
lyrata]
gi|297329237|gb|EFH59656.1| hypothetical protein ARALYDRAFT_898801 [Arabidopsis lyrata subsp.
lyrata]
Length = 873
Score = 476 bits (1225), Expect = e-131, Method: Compositional matrix adjust.
Identities = 296/735 (40%), Positives = 415/735 (56%), Gaps = 77/735 (10%)
Query: 34 QNPEKPSIFVISCSKTQNPLTQSETRVQNDTTSAIQRIADKLRSLGIVEQTTSKDDTLNP 93
+N KP V++ K ++ + R ++ S +++I +KL+ G +E+ ++ N
Sbjct: 80 RNQPKPPKVVVNYRKEGGIVSGDDNRSRDGEGSTMEKIVEKLKKYGYMEKG---EEVQNK 136
Query: 94 EPETRATDNAG---EIFIPLPHRIPKYRVGHT------IDDSWSTPENPVPVPGTGAAIV 144
E E G +IF +P R G T DD + + V P +
Sbjct: 137 EIEQERRIEKGSVEDIFYVEEGNLPNTRGGFTEESLLGRDDVFGS-NGEVGFPWEKMSAK 195
Query: 145 RYNQLNKEVGRQKWLAKNSKMNEKEKEVPTLAELKLSGKELRRLRTLGIGLRKKLKIGKA 204
+L E W AK KE +LAE+ L ELRRLR L K++I A
Sbjct: 196 EKKELEAE-----WTAK------KENRY-SLAEMTLPESELRRLRNLTFRTASKMRIRGA 243
Query: 205 GITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRTHDSLERKTGGLVVWRSGSKIILYRG 264
G+T+ V+ I E+W+ AE+V++ E LNM++ H+ LE+KTGGLV+WRSG+ I LYRG
Sbjct: 244 GVTQVAVDAIKEKWKSAEIVRLKIEGASALNMRKMHEILEKKTGGLVIWRSGTSISLYRG 303
Query: 265 ADYKYPYFLADESSTDGASSDDLP--NQLVDDEGLDETKTHSSGADSAKPSGQSPTNKKV 322
Y+ P ++ + LP +VD+ + K H + S KK
Sbjct: 304 VSYELPSGKWNKQRREETPPSSLPETTTMVDN---SDGKVHLPQLEQVTTS----VEKKD 356
Query: 323 QQTLIHSVGSPDKLRYQLPGEAELVEEADRLLDGLGPRFTDWWGYDPQPVDADLLPATVP 382
Q + PD E +E D LLDGLGPRF DW G +P PVDADLLP +P
Sbjct: 357 QTS------QPD---------VEYEDEIDELLDGLGPRFMDWPGDNPLPVDADLLPGAIP 401
Query: 383 GYRRPFRLLPYGVQPKLTNDEMTTLRRLGRPLPCHFALGRNRNLQGLAAAIVKLWEKCEI 442
GY PFR+LPYGV+ L E T LRRL R +P HFALGR+R LQGLA A+V+LWEK +
Sbjct: 402 GYEPPFRVLPYGVRSSLGPKEATALRRLARSIPPHFALGRSRQLQGLATAMVRLWEKSML 461
Query: 443 AKIAVKRGAQNTNSEMMAQELKRLTGGTLLSRDREFIVFYRGKDFLPPAASSAIEERRKH 502
AKIA+KRG Q+T SE MA++LK+LTGG LLSR+++F+VFYRGK+FL + A+ E+ +
Sbjct: 462 AKIAIKRGVQSTTSERMAEDLKKLTGGILLSRNKDFLVFYRGKNFLSREVADALVEQERF 521
Query: 503 EFSTSNDSKEEPEL-----------------------GNRHDNSGDNTQDEFGCTNDQKS 539
T D +E+ L G D +G ++ +D S
Sbjct: 522 -VRTLQDEEEQARLRGSSALIVPCIEPPKKLVSAGTLGETLDATGKWGKN---LDDDDHS 577
Query: 540 TMHSEQKERRSAEVAIRRTNIRLSRVLEKKAEAEKLLAELEE-ERPEQYEVDKEGITEEE 598
++ E E +R+ +L+ K +AE+ LA++EE +P + D + IT+EE
Sbjct: 578 DEVKQEVEILRHENLVRKLERKLAFAERKLLKAERGLAKVEECLKPAEQREDPDSITDEE 637
Query: 599 RYMLRKVGLRMKAFLLMGRRGVFDGTVENMHLHWKHRELVKIISKQRKIEAALQEARTLE 658
R+M RK+GL+MKAFLL+GRRGVFDGTVENMHLHWK+RELVKII K + + + A LE
Sbjct: 638 RFMFRKLGLKMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKAKTFDGVKKVALALE 697
Query: 659 VESGGILVAVERVNKGYAIILYRGKNYERPACLRPKTLLTKREAMKRSLEAQRRQSLKLH 718
ESGGILV++++V KGYAII+YRGK+Y+RP LRPK LLTKR+A+ RS+E QRR+ L H
Sbjct: 698 AESGGILVSIDKVTKGYAIIVYRGKDYKRPTMLRPKNLLTKRKALARSIELQRREGLLKH 757
Query: 719 VLELTRNIEKLKLQL 733
+ + E+L+ ++
Sbjct: 758 ISTMQAKAEQLRAEI 772
Score = 43.9 bits (102), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 40/69 (57%)
Query: 953 PVLAVGRSNIVTGVAKAIKAHFEKYPLAIVNVKGRAKGTSVQEVVAKLEEATGAVLVSQE 1012
P A+GRS + G+A A+ +EK LA + +K + T+ + + L++ TG +L+S+
Sbjct: 435 PHFALGRSRQLQGLATAMVRLWEKSMLAKIAIKRGVQSTTSERMAEDLKKLTGGILLSRN 494
Query: 1013 PSKVILYRG 1021
++ YRG
Sbjct: 495 KDFLVFYRG 503
>gi|356527819|ref|XP_003532504.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Glycine max]
Length = 719
Score = 476 bits (1224), Expect = e-131, Method: Compositional matrix adjust.
Identities = 292/748 (39%), Positives = 413/748 (55%), Gaps = 131/748 (17%)
Query: 19 NSSSPFFTFHKTLSLQNPEKPSIFVISCSKTQ---------NPLTQSETRVQNDTTSAIQ 69
+SS F+ + L++P I ++ S +PL+ + + T+AI+
Sbjct: 12 SSSVLLFSSYSKFKLKSPLGIPIRALTSSSLPTTRDHDDLFDPLSLPAPQHLHKATNAIE 71
Query: 70 RIADKLRSLGIVEQTT---SKDDTLNPEPETRATDNAGEIFIPLPHRIPKYRVGHTIDDS 126
RIA +LR+LG+ T ++DD L E
Sbjct: 72 RIALRLRNLGLASTTDLADAEDDFLRRE-------------------------------- 99
Query: 127 WSTPENPVPVPGTGAAIVRYNQLNKEVGRQKWLAKNSKMNEKEKEVPTLAELKLSGKELR 186
W P+ A+ +++ +E + + + +K TLAE L +ELR
Sbjct: 100 WLRPDQ---------ALFPWDKGQEEDAEEPGEQQKEMLKKKNVNASTLAEQTLVEEELR 150
Query: 187 RLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRTHDSLERK 246
RLRTLG+ L++K+ I KAG+T +++ IH W + E+V++ + NMK H +E +
Sbjct: 151 RLRTLGMSLKEKITIPKAGLTRAVLDRIHRHWSNCELVRLKFHEFLAQNMKLAHQIVEHR 210
Query: 247 TGGLVVWRSGSKIILYRGADYKYPYFLADESSTDGASSDDLPNQLVDDEGLDETKTHSSG 306
T GLV+WRSGS + +YRG +Y+ P ++ T
Sbjct: 211 TRGLVIWRSGSYMWVYRGKNYQGP--------------------------VESDATSMEK 244
Query: 307 ADSAKPSGQSPTNKKVQQTLIHSVGSPDKLRYQLPGEAELVEEADRLLDGLGPRFTDWWG 366
+++ G++ T P EAE +R+LDG GPRF +WWG
Sbjct: 245 SEAVWWKGENMT----------------------PEEAEF----NRMLDGFGPRFVEWWG 278
Query: 367 YDPQPVDADLLPATVPGYRRPFRLLPYGVQPKLTNDEMTTLRRLGRPLPCHFALGRNRNL 426
PVDAD LP VPGY+ P RLLP G++P+LTNDE+T +R+L + LPCHFALGRNRNL
Sbjct: 279 TGILPVDADSLPPMVPGYKTPLRLLPAGMRPQLTNDELTNMRKLAKSLPCHFALGRNRNL 338
Query: 427 QGLAAAIVKLWEKCEIAKIAVKRGAQNTNSEMMAQELKRLTGGTLLSRDREFIVFYRGKD 486
QGLA+AI++LWEK +AKI VKRG NTN+E+MAQELK LTGGTLL R++ +IV YRGKD
Sbjct: 339 QGLASAILRLWEKSLVAKIGVKRGIVNTNNELMAQELKALTGGTLLLRNKYYIVIYRGKD 398
Query: 487 FLPPAASSAIEERRKHEFSTSNDSKEEPELGNRHDN--SGDN-------TQDEF----GC 533
F+P + ++ I ER+ E + EE D+ SG++ + EF C
Sbjct: 399 FVPTSVAAVIAERQ--ELTKQVQDVEEKVRCKALDSTPSGEDESTAQAGSLAEFYVAQAC 456
Query: 534 TNDQKSTMHSEQKERRSAEVA-------IRRTNIRLSRVLEKKAEAEKLLAELEEE-RPE 585
ST E++ER EVA +++ +L+ K+ AEKLLA++E P
Sbjct: 457 WGRDIST---EERERMMQEVAKAKNAKLVKKIECKLAVAQAKRLRAEKLLAKIEASLLPV 513
Query: 586 QYEVDKEGITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVENMHLHWKHRELVKIISKQR 645
+ DKE IT+EER M R VGLRMKA+L +G RGVFDG +ENMHLHWKHRELVK+I+KQ+
Sbjct: 514 GPDYDKETITDEERVMFRSVGLRMKAYLPLGIRGVFDGVIENMHLHWKHRELVKLITKQK 573
Query: 646 KIEAALQEARTLEVESGGILVAVERVNKGYAIILYRGKNYERPACLRPKTLLTKREAMKR 705
+ AR LE ESGGILVA+++V KG+++I YRGKNY RP LRP+ LLTK +A++R
Sbjct: 574 TLAFVEDTARLLEYESGGILVAIDKVPKGFSLIYYRGKNYRRPMTLRPRNLLTKAKALQR 633
Query: 706 SLEAQRRQSLKLHVLELTRNIEKLKLQL 733
S+ QR ++L HV EL IE++K +L
Sbjct: 634 SVVMQRHEALSQHVTELGEKIEEMKKKL 661
>gi|255546121|ref|XP_002514120.1| conserved hypothetical protein [Ricinus communis]
gi|223546576|gb|EEF48074.1| conserved hypothetical protein [Ricinus communis]
Length = 930
Score = 474 bits (1220), Expect = e-130, Method: Compositional matrix adjust.
Identities = 264/583 (45%), Positives = 359/583 (61%), Gaps = 46/583 (7%)
Query: 175 LAELKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRL 234
LAE L EL+RLR + + + +++K+G AGI + +V+ +HE+WR EVVK+ E+
Sbjct: 321 LAERMLPEHELKRLRNVALRMYERIKVGAAGINQDLVDAVHEKWRLDEVVKLKFEEPLSF 380
Query: 235 NMKRTHDSLERKTGGLVVWRSGSKIILYRGADYKYPYFLADESSTDGASSDDL--PNQLV 292
NM+RTH+ LE +TGGLV+WRSGS ++LYRG YK + + S D A + L P ++
Sbjct: 381 NMRRTHEILENRTGGLVIWRSGSSVVLYRGISYKL-HCVRSFSKQDEAGKEILAHPEEVT 439
Query: 293 DDEGLDETKTHSSGADSAKPSGQSPTNKKVQQTLIHSVGSPDKLRY--QLPGEAELVE-- 348
+ L+ H G + PD+ +Y L E EL +
Sbjct: 440 SNATLNIGVKHFIGTTESY--------------------IPDRAKYLKDLSRE-ELTDFT 478
Query: 349 EADRLLDGLGPRFTDWWGYDPQPVDADLLPATVPGYRRPFRLLPYGVQPKLTNDEMTTLR 408
E ++ LD LGPRF DW G +P PVDADLL A PGY+ PFRLLPYGV+ LT+ EMT R
Sbjct: 479 ELNQFLDELGPRFEDWCGREPLPVDADLLLAVDPGYKPPFRLLPYGVRHCLTDKEMTIFR 538
Query: 409 RLGRPLPCHFALGRNRNLQGLAAAIVKLWEKCEIAKIAVKRGAQNTNSEMMAQELKRLTG 468
RL R +P HFALGRNR LQGLA AIVKLWE+ I KIA+KRG QNT +E MA+ELK LTG
Sbjct: 539 RLARTVPPHFALGRNRQLQGLAKAIVKLWERSAIVKIAIKRGVQNTRNERMAEELKVLTG 598
Query: 469 GTLLSRDREFIVFYRGKDFLPPAASSAIEERRKHEFSTSNDSKEEPELGNRHDNSGDNTQ 528
G LLSR++E+IVFYRG DFLPPA ++ER+K + ++ ++ ++ S T
Sbjct: 599 GILLSRNKEYIVFYRGNDFLPPAIVKTLKERKKLTYLKQDEEEQARQMALASVESSAKTS 658
Query: 529 D---EFGCTNDQKSTMHSEQKERRSAEV------AIRRTNIRLSRVLEKKA--------E 571
G + + + +R S ++ A+ L + LE K +
Sbjct: 659 KVPLVAGTLAETVAATSHWRDQRGSPDIDEMLREAVLAKRASLVKHLENKLALAKGKLRK 718
Query: 572 AEKLLAELEEE-RPEQYEVDKEGITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVENMHL 630
AEK LA++ E P D E I++EER++ RK+GL MK +L +G+RGV+DGT+ENMHL
Sbjct: 719 AEKALAKVHEHLDPSGLPTDLETISDEERFLFRKIGLSMKPYLFLGKRGVYDGTIENMHL 778
Query: 631 HWKHRELVKIISKQRKIEAALQEARTLEVESGGILVAVERVNKGYAIILYRGKNYERPAC 690
HWK+RELVK+I + + A +LE ESGG+LV++ER KGYAII+YRGKNY P
Sbjct: 779 HWKYRELVKVIVRGKSFAQVKHIAISLEAESGGVLVSIERTTKGYAIIVYRGKNYLHPEV 838
Query: 691 LRPKTLLTKREAMKRSLEAQRRQSLKLHVLELTRNIEKLKLQL 733
+RPK LLTKR+A+ RS+E QRR++LK H+ +L IE LKL+L
Sbjct: 839 MRPKNLLTKRQALVRSIELQRREALKHHISDLQERIELLKLEL 881
Score = 41.6 bits (96), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 49/88 (55%), Gaps = 2/88 (2%)
Query: 934 LSNRDRLLLRKQALRMKKRPVLAVGRSNIVTGVAKAIKAHFEKYPLAIVNVKGRAKGTSV 993
L++++ + R+ A + P A+GR+ + G+AKAI +E+ + + +K + T
Sbjct: 529 LTDKEMTIFRRLARTVP--PHFALGRNRQLQGLAKAIVKLWERSAIVKIAIKRGVQNTRN 586
Query: 994 QEVVAKLEEATGAVLVSQEPSKVILYRG 1021
+ + +L+ TG +L+S+ ++ YRG
Sbjct: 587 ERMAEELKVLTGGILLSRNKEYIVFYRG 614
Score = 40.0 bits (92), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 53/105 (50%), Gaps = 5/105 (4%)
Query: 588 EVDKEGITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVENMHLHWKHRELVKIISKQRKI 647
E+ + + E E LR V LRM + +G G+ V+ +H W+ E+VK+ ++
Sbjct: 320 ELAERMLPEHELKRLRNVALRMYERIKVGAAGINQDLVDAVHEKWRLDEVVKLKFEEPLS 379
Query: 648 EAALQEARTLEVESGGILVAVERVNKGYAIILYRGKNYERPACLR 692
+ LE +GG+++ G +++LYRG +Y + C+R
Sbjct: 380 FNMRRTHEILENRTGGLVIW----RSGSSVVLYRGISY-KLHCVR 419
>gi|357156286|ref|XP_003577404.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Brachypodium distachyon]
Length = 881
Score = 473 bits (1217), Expect = e-130, Method: Compositional matrix adjust.
Identities = 265/584 (45%), Positives = 371/584 (63%), Gaps = 44/584 (7%)
Query: 175 LAELKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRL 234
+AEL L ELRRLR + ++ ++++G AG+T IV I E+W+ EVV++ L
Sbjct: 165 MAELTLPEAELRRLRHATMRIKSRIQVGGAGVTREIVAKIKEKWKTDEVVRVKVSGTPAL 224
Query: 235 NMKRTHDSLERKTGGLVVWRSGSKIILYRGADYKYPYFLADESSTDGASSDDLPNQLVDD 294
NM+ H+ LERKTGGLV+WRSG+ + LYRG Y P +T G N+
Sbjct: 225 NMRLFHEILERKTGGLVIWRSGTSVSLYRGVAYDVP------ETTKGT------NRNWQA 272
Query: 295 EGLDETKTHSSGADSAKPSGQSPTNKKVQQT-----LIHSVGSPDKLRYQLPGEAELVEE 349
G+ + + P S N+KV + +V ++ +P E + EE
Sbjct: 273 LGMKSSI-------NIPPMPSSLPNEKVNGMQDRVGALVAVTENEETAETVP-EIKYEEE 324
Query: 350 ADRLLDGLGPRFTDWWGYDPQPVDADLLPATVPGYRRPFRLLPYGVQPKLTNDEMTTLRR 409
DRLLD LGPR++DW G +P PVDADLLPATVPGY+ PFR+LPYGV+ L+ + T LRR
Sbjct: 325 IDRLLDELGPRYSDWPGSNPLPVDADLLPATVPGYKPPFRVLPYGVRRSLSRKDTTNLRR 384
Query: 410 LGRPLPCHFALGRNRNLQGLAAAIVKLWEKCEIAKIAVKRGAQNTNSEMMAQELKRLTGG 469
LGR LP HFALGR+R LQGLAAA+VKLWE+ IAKIA+KRG Q T SE MA++LK+LTGG
Sbjct: 385 LGRGLPPHFALGRSRQLQGLAAAMVKLWERSSIAKIALKRGVQLTTSERMAEDLKKLTGG 444
Query: 470 TLLSRDREFIVFYRGKDFLPPAASSAIEER----------------RKHEFSTSNDSKEE 513
+LSR+ +F+VFYRGKDFL + + ER R F++S ++ E
Sbjct: 445 VMLSRNNDFVVFYRGKDFLSSELAEVLLERERSMKSLQDEEQARLDRTPSFASSTEAFIE 504
Query: 514 PEL-GNRHDNSGDNTQDEFGCTNDQKSTMHSEQKERRSAEVAIRRTNIRLSRVLEKKAEA 572
P + G + N++ + M + + A+V +R+ +LS ++ A+A
Sbjct: 505 PSVAGTLEETLEANSKYGNKVDENHMDKMTKTVEAAKHADV-VRKLEWKLSLAEKRIAKA 563
Query: 573 EKLLAELEEE-RPEQYEVDKEGITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVENMHLH 631
E++L ++E +P + E ITEEER+M RK+GLRMKAFLL+GRRGVFDGT+ENMHLH
Sbjct: 564 ERVLGKVETALKPSEDTNPHETITEEERFMFRKLGLRMKAFLLLGRRGVFDGTIENMHLH 623
Query: 632 WKHRELVKIISKQRKIEAALQEARTLEVESGGILVAVERVNKGYAIILYRGKNYERPACL 691
WK+RELVKI+ K + + A +LEVESGGILV+V++V+KGYAI+++RGK+Y RP+ L
Sbjct: 624 WKYRELVKILVKVKSFTEVKRIALSLEVESGGILVSVDKVSKGYAIVVFRGKDYRRPSML 683
Query: 692 RPKTLLTKREAMKRSLEAQRRQSLKLHVLELTRNIEKLKLQLVK 735
RP+ LL+KR+A+ RS+E QR Q+L H+ +L R + +L+ +LV+
Sbjct: 684 RPRNLLSKRKALARSIEIQRMQALNRHIGKLNRRVNQLRSELVQ 727
Score = 41.2 bits (95), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 48/88 (54%), Gaps = 2/88 (2%)
Query: 934 LSNRDRLLLRKQALRMKKRPVLAVGRSNIVTGVAKAIKAHFEKYPLAIVNVKGRAKGTSV 993
LS +D LR+ + P A+GRS + G+A A+ +E+ +A + +K + T+
Sbjct: 374 LSRKDTTNLRRLGRGLP--PHFALGRSRQLQGLAAAMVKLWERSSIAKIALKRGVQLTTS 431
Query: 994 QEVVAKLEEATGAVLVSQEPSKVILYRG 1021
+ + L++ TG V++S+ V+ YRG
Sbjct: 432 ERMAEDLKKLTGGVMLSRNNDFVVFYRG 459
>gi|356529577|ref|XP_003533366.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Glycine max]
Length = 791
Score = 473 bits (1216), Expect = e-130, Method: Compositional matrix adjust.
Identities = 266/596 (44%), Positives = 374/596 (62%), Gaps = 50/596 (8%)
Query: 173 PTLAELKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLC 232
P+LA+L L + LRRLR G+ +R+++ + KAG+TE ++ IH+RWR E+V++ +
Sbjct: 178 PSLADLTLEDELLRRLRREGMRVRERVSVPKAGLTEEVMEKIHKRWRKEELVRLKFHEEL 237
Query: 233 RLNMKRTHDSLERKTGGLVVWRSGSKIILYRGADYKYPYFLA--DESSTDGASSDDLPNQ 290
+M++ H+ +ER+TGGLV WRSGS +++YRG DY+ P +E DG
Sbjct: 238 AKDMRKAHEIVERRTGGLVTWRSGSVMMVYRGIDYQGPDSRKELNEKKGDGF-------- 289
Query: 291 LVDDEGLDETKTHSSGADSAKPSGQSPTNKKVQQTLIHSVGSPDKLRYQLPGEAELVEEA 350
V D E T +S ++ + + ++ P+ + EAE E
Sbjct: 290 FVPDVSKREDSTATSTSEKS-------------EVVVREREHPENM-----SEAE--AEY 329
Query: 351 DRLLDGLGPRFTDWWGYDPQPVDADLLPATVPGYRRPFRLLPYGVQPKLTNDEMTTLRRL 410
+ LLDGLGPRF WWG PVDADLLP TVPGY+ PFRLLP G++ +LTN EMT LR+L
Sbjct: 330 NALLDGLGPRFFGWWGTGILPVDADLLPRTVPGYKTPFRLLPTGMRSRLTNAEMTNLRKL 389
Query: 411 GRPLPCHFALGRNRNLQGLAAAIVKLWEKCEIAKIAVKRGAQNTNSEMMAQELKRLTGGT 470
+ LPCHFA+GRNRN QGLA AI+KLWEK ++KIAVKRG QNTN+E+MA+ELK LTGGT
Sbjct: 390 AKSLPCHFAVGRNRNHQGLACAILKLWEKSLVSKIAVKRGIQNTNNELMAEELKMLTGGT 449
Query: 471 LLSRDREFIVFYRGKDFLPPAASSAIEERRK--HEFSTSNDSKEEPELGNRHDNSGDNT- 527
LL R++ FIV YRGKDF+P + ++ + ER + + D + G+ T
Sbjct: 450 LLLRNKYFIVIYRGKDFVPTSVAAVLAEREELTKQVQDVEDKVRCRAVDAIPSGQGEATA 509
Query: 528 -----------QDEFG--CTNDQKSTMHSEQKERRSAEVAIRRTNIRLSRVLEKKAEAEK 574
Q +G + D++ M E + ++A++ +R+ ++ KK AEK
Sbjct: 510 QAGTLAEFYEAQARWGREISPDEREKMMEEAAKAKTAKL-VRQIEHKIFIAQTKKLRAEK 568
Query: 575 LLAELEEER-PEQYEVDKEGITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVENMHLHWK 633
LLA++E P + D+E IT+EER M RKVGLRMK +L +G RGVFDG VENMHLHWK
Sbjct: 569 LLAKIEASMVPAGPDYDQETITDEERVMFRKVGLRMKPYLPLGIRGVFDGVVENMHLHWK 628
Query: 634 HRELVKIISKQRKIEAALQEARTLEVESGGILVAVERVNKGYAIILYRGKNYERPACLRP 693
HRELVK+++KQ+ + AR LE ESGGILVA+E+V+K +A+I YRGKNY+RP LRP
Sbjct: 629 HRELVKLMTKQKTLAFVEDTARLLEYESGGILVAIEKVSKEFALIYYRGKNYKRPITLRP 688
Query: 694 KTLLTKREAMKRSLEAQRRQSLKLHVLELTRNIEKLK--LQLVKDKEANSLETIDE 747
+ LLTK +A+KR + QR ++L H+ EL + IE++K L + +D + +I+E
Sbjct: 689 RNLLTKGKALKRHVAMQRHEALSQHITELEKTIEQMKKELGMTQDSDVEDGGSIEE 744
>gi|449452735|ref|XP_004144114.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Cucumis sativus]
Length = 846
Score = 471 bits (1212), Expect = e-130, Method: Compositional matrix adjust.
Identities = 261/583 (44%), Positives = 363/583 (62%), Gaps = 45/583 (7%)
Query: 175 LAELKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRL 234
LAE L ELRRLR + + + +++++G GIT+ +++ IHE+W+ EVVK+ E +
Sbjct: 273 LAEQMLPEHELRRLRNISLRMVERIEVGVKGITQELLDSIHEKWKVDEVVKLKFEGPLTV 332
Query: 235 NMKRTHDSLERKTGGLVVWRSGSKIILYRGADYKYPYFLADESSTDGASSD-DLPNQLVD 293
NMKR H+ LE +TGGLV+WRSGS I+LYRG Y P + S+ D+PN +
Sbjct: 333 NMKRAHEKLENRTGGLVIWRSGSLIVLYRGMTYHLPCVQSYAKQNQAKSNTLDVPNNVES 392
Query: 294 DEGLDETKTHSS-GADSAKPSGQSPTNKKVQQTLIHSVGSPDKLRYQLPGEAELVEEAD- 351
D+ K H++ G S SG S K + + EL+E +D
Sbjct: 393 DDITRNEKLHTTVGTMSTIVSGASKHTKTL-------------------SKKELMELSDL 433
Query: 352 -RLLDGLGPRFTDWWGYDPQPVDADLLPATVPGYRRPFRLLPYGVQPKLTNDEMTTLRRL 410
LLD +GPRF DW G +P PVDADLLP VPGY+ P R+LPYGV+ L N E+T RRL
Sbjct: 434 NHLLDEIGPRFKDWSGCEPVPVDADLLPGIVPGYKPPTRILPYGVRHCLRNKEVTIFRRL 493
Query: 411 GRPLPCHFALGRNRNLQGLAAAIVKLWEKCEIAKIAVKRGAQNTNSEMMAQELKRLTGGT 470
R +P HFALGRNR LQGLA A+VKLWEKC IAKIA+KRG +NT +E MA+EL+ LTGGT
Sbjct: 494 ARKMPPHFALGRNRQLQGLANAMVKLWEKCAIAKIAIKRGVENTRNERMAEELRILTGGT 553
Query: 471 LLSRDREFIVFYRGKDFLPPAASSA-------------IEERRKHEFSTSNDSKEEPELG 517
LLSR++E+IVFYRG D+LPP + A +EE+ + S + +SK +
Sbjct: 554 LLSRNKEYIVFYRGNDYLPPTITEALKERRKLADRQQDVEEQVRQVASAAIESKVKA--S 611
Query: 518 NRHDNSGDNTQDEFGCTN-DQKSTMHSEQKERRSAEVA-----IRRTNIRLSRVLEKKAE 571
N +G T+ + + + H + R + +A I +L+ K
Sbjct: 612 NAPLVAGTLTETIAATSRWGSQPSGHDIENMREDSALAKLDSLIEYLKKKLALAKCKVKN 671
Query: 572 AEKLLAELEEER-PEQYEVDKEGITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVENMHL 630
AEK++A+L+E++ P D E IT+EER + RK+GL MK +LL+GRRGV+DGTVENMHL
Sbjct: 672 AEKIIAKLQEKKEPSDLPTDLETITDEERLLFRKIGLSMKPYLLLGRRGVYDGTVENMHL 731
Query: 631 HWKHRELVKIISKQRKIEAALQEARTLEVESGGILVAVERVNKGYAIILYRGKNYERPAC 690
HWK RELVKII + + ++ A +LE ES G+++++++ KGY +I+YRGKNY RP
Sbjct: 732 HWKFRELVKIIVRGKTLQQVKHVAISLEAESNGVVISLDKTTKGYEVIVYRGKNYTRPDA 791
Query: 691 LRPKTLLTKREAMKRSLEAQRRQSLKLHVLELTRNIEKLKLQL 733
+RPK +LT+R+A+ RS+E QRR++LK H+L+L IE LK +L
Sbjct: 792 MRPKNMLTRRQALARSIELQRREALKHHILDLEEKIELLKAEL 834
Score = 43.1 bits (100), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 49/92 (53%), Gaps = 7/92 (7%)
Query: 934 LSNRDRLLLRKQALRMKKRPVLAVGRSNIVTGVAKAIKAHFEKYPLAIVNVKGRAKGTSV 993
+++ +RLL RK L MK P L +GR + G + + H++ L + V+G+ V
Sbjct: 695 ITDEERLLFRKIGLSMK--PYLLLGRRGVYDGTVENMHLHWKFRELVKIIVRGKTL-QQV 751
Query: 994 QEVVAKLEEATGAVLVSQEPS----KVILYRG 1021
+ V LE + V++S + + +VI+YRG
Sbjct: 752 KHVAISLEAESNGVVISLDKTTKGYEVIVYRG 783
Score = 42.7 bits (99), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 47/88 (53%), Gaps = 2/88 (2%)
Query: 934 LSNRDRLLLRKQALRMKKRPVLAVGRSNIVTGVAKAIKAHFEKYPLAIVNVKGRAKGTSV 993
L N++ + R+ A +M P A+GR+ + G+A A+ +EK +A + +K + T
Sbjct: 482 LRNKEVTIFRRLARKMP--PHFALGRNRQLQGLANAMVKLWEKCAIAKIAIKRGVENTRN 539
Query: 994 QEVVAKLEEATGAVLVSQEPSKVILYRG 1021
+ + +L TG L+S+ ++ YRG
Sbjct: 540 ERMAEELRILTGGTLLSRNKEYIVFYRG 567
>gi|449529423|ref|XP_004171699.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like, partial [Cucumis sativus]
Length = 789
Score = 470 bits (1210), Expect = e-129, Method: Compositional matrix adjust.
Identities = 261/583 (44%), Positives = 363/583 (62%), Gaps = 45/583 (7%)
Query: 175 LAELKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRL 234
LAE L ELRRLR + + + +++++G GIT+ +++ IHE+W+ EVVK+ E +
Sbjct: 216 LAEQMLPEHELRRLRNISLRMVERIEVGVKGITQELLDSIHEKWKVDEVVKLKFEGPLTV 275
Query: 235 NMKRTHDSLERKTGGLVVWRSGSKIILYRGADYKYPYFLADESSTDGASSD-DLPNQLVD 293
NMKR H+ LE +TGGLV+WRSGS I+LYRG Y P + S+ D+PN +
Sbjct: 276 NMKRAHEKLENRTGGLVIWRSGSLIVLYRGMTYHLPCVQSYAKQNQAKSNTLDVPNNVES 335
Query: 294 DEGLDETKTHSS-GADSAKPSGQSPTNKKVQQTLIHSVGSPDKLRYQLPGEAELVEEAD- 351
D+ K H++ G S SG S K + + EL+E +D
Sbjct: 336 DDITRNEKLHTTVGTMSTIVSGASKHTKTLSK-------------------KELMELSDL 376
Query: 352 -RLLDGLGPRFTDWWGYDPQPVDADLLPATVPGYRRPFRLLPYGVQPKLTNDEMTTLRRL 410
LLD +GPRF DW G +P PVDADLLP VPGY+ P R+LPYGV+ L N E+T RRL
Sbjct: 377 NHLLDEIGPRFKDWSGCEPVPVDADLLPGIVPGYKPPTRILPYGVRHCLRNKEVTIFRRL 436
Query: 411 GRPLPCHFALGRNRNLQGLAAAIVKLWEKCEIAKIAVKRGAQNTNSEMMAQELKRLTGGT 470
R +P HFALGRNR LQGLA A+VKLWEKC IAKIA+KRG +NT +E MA+EL+ LTGGT
Sbjct: 437 ARKMPPHFALGRNRQLQGLANAMVKLWEKCAIAKIAIKRGVENTRNERMAEELRILTGGT 496
Query: 471 LLSRDREFIVFYRGKDFLPPAASSA-------------IEERRKHEFSTSNDSKEEPELG 517
LLSR++E+IVFYRG D+LPP + A +EE+ + S + +SK +
Sbjct: 497 LLSRNKEYIVFYRGNDYLPPTITEALKERRKLADRQQDVEEQVRQVASAAIESKVKA--S 554
Query: 518 NRHDNSGDNTQDEFGCTN-DQKSTMHSEQKERRSAEVA-----IRRTNIRLSRVLEKKAE 571
N +G T+ + + + H + R + +A I +L+ K
Sbjct: 555 NAPLVAGTLTETIAATSRWGSQPSGHDIENMREDSALAKLDSLIEYLKKKLALAKCKVKN 614
Query: 572 AEKLLAELEEER-PEQYEVDKEGITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVENMHL 630
AEK++A+L+E++ P D E IT+EER + RK+GL MK +LL+GRRGV+DGTVENMHL
Sbjct: 615 AEKIIAKLQEKKEPSDLPTDLETITDEERLLFRKIGLSMKPYLLLGRRGVYDGTVENMHL 674
Query: 631 HWKHRELVKIISKQRKIEAALQEARTLEVESGGILVAVERVNKGYAIILYRGKNYERPAC 690
HWK RELVKII + + ++ A +LE ES G+++++++ KGY +I+YRGKNY RP
Sbjct: 675 HWKFRELVKIIVRGKTLQQVKHVAISLEAESNGVVISLDKTTKGYEVIVYRGKNYTRPDA 734
Query: 691 LRPKTLLTKREAMKRSLEAQRRQSLKLHVLELTRNIEKLKLQL 733
+RPK +LT+R+A+ RS+E QRR++LK H+L+L IE LK +L
Sbjct: 735 MRPKNMLTRRQALARSIELQRREALKHHILDLEEKIELLKAEL 777
Score = 43.1 bits (100), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 49/92 (53%), Gaps = 7/92 (7%)
Query: 934 LSNRDRLLLRKQALRMKKRPVLAVGRSNIVTGVAKAIKAHFEKYPLAIVNVKGRAKGTSV 993
+++ +RLL RK L MK P L +GR + G + + H++ L + V+G+ V
Sbjct: 638 ITDEERLLFRKIGLSMK--PYLLLGRRGVYDGTVENMHLHWKFRELVKIIVRGKTL-QQV 694
Query: 994 QEVVAKLEEATGAVLVSQEPS----KVILYRG 1021
+ V LE + V++S + + +VI+YRG
Sbjct: 695 KHVAISLEAESNGVVISLDKTTKGYEVIVYRG 726
Score = 42.7 bits (99), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 47/88 (53%), Gaps = 2/88 (2%)
Query: 934 LSNRDRLLLRKQALRMKKRPVLAVGRSNIVTGVAKAIKAHFEKYPLAIVNVKGRAKGTSV 993
L N++ + R+ A +M P A+GR+ + G+A A+ +EK +A + +K + T
Sbjct: 425 LRNKEVTIFRRLARKMP--PHFALGRNRQLQGLANAMVKLWEKCAIAKIAIKRGVENTRN 482
Query: 994 QEVVAKLEEATGAVLVSQEPSKVILYRG 1021
+ + +L TG L+S+ ++ YRG
Sbjct: 483 ERMAEELRILTGGTLLSRNKEYIVFYRG 510
>gi|302805129|ref|XP_002984316.1| hypothetical protein SELMODRAFT_120007 [Selaginella moellendorffii]
gi|300148165|gb|EFJ14826.1| hypothetical protein SELMODRAFT_120007 [Selaginella moellendorffii]
Length = 692
Score = 470 bits (1209), Expect = e-129, Method: Compositional matrix adjust.
Identities = 262/581 (45%), Positives = 361/581 (62%), Gaps = 49/581 (8%)
Query: 171 EVPTLAELKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCED 230
++P LAEL + ELRRL+ + I + +K+G G+T+ +V IH RW+ EVVKI C+
Sbjct: 71 KLPCLAELTIPELELRRLQRIAIRVVNPIKVGYLGVTKAVVQDIHRRWQKCEVVKIQCDG 130
Query: 231 LCRLNMKRTHDSLERKTGGLVVWRSGSKIILYRGADYKYPY---FLADESSTDGASSDDL 287
+NMK+THD LE KTGGLVVWR+G ILYRG Y +A+ + +
Sbjct: 131 PAAINMKQTHDELETKTGGLVVWRTGGMAILYRGKGYFARVDNSMVANLKKYQRRKINLM 190
Query: 288 PNQLVDDEGLDETKTHSSGADSAKPSGQSPTNKKVQQTLIHSVGSPDKLRYQLPGEAELV 347
+ DE D + S ++ + S + E E +
Sbjct: 191 EAIKIRDEDEDRDYSQSEHGEARRDSEKGNI------------------------EDEYL 226
Query: 348 EEADRLLDGLGPRFTDWWGYDPQPVDADLLPATVPGYRRPFRLLPYGVQPKLTNDEMTTL 407
+E D LL+ LGPR+ DW G P PVD DLLPA+VPGY+ P R+LPY + L+N E+T L
Sbjct: 227 DEIDALLEELGPRYDDWIGRKPVPVDGDLLPASVPGYKPPLRMLPYRAKKNLSNMELTVL 286
Query: 408 RRLGRPLPCHFALGRNRNLQGLAAAIVKLWEKCEIAKIAVKRGAQNTNSEMMAQELKRLT 467
RRL +PLP HF LGRNR LQGLA+AI+KLW+K E+ KI +KRG QNT +++MA+EL+RLT
Sbjct: 287 RRLVKPLPPHFVLGRNRGLQGLASAILKLWQKSELVKIGLKRGVQNTRNQLMAEELERLT 346
Query: 468 GGTLLSRDREFIVFYRGKDFLPPAASSAIEERRKH--EFSTSNDSKEEP-ELGNRHDN-- 522
GG LLSRD+ FI YRGKDFLP + ++ + ER + E D P ++G+ +
Sbjct: 347 GGVLLSRDKFFITLYRGKDFLPTSVAAVLRERESNMRELLLKEDQVRIPAQIGDGQNRTT 406
Query: 523 --SGDNTQD-EFGCTNDQKSTMHSEQKERRSAEVAI-----RRTNIRLSRVLEKKAEAEK 574
SG ++ E + + + ++ +R +A VA+ +R +L+ + KK A+
Sbjct: 407 PVSGSLSESMEMRRQWEAQRSEKDDEMDRNAAVVALKVREQKRLEAKLAAAISKKRRADL 466
Query: 575 LLAELEE-----ERPEQYEVDKEGITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVENMH 629
+ +LE E P D+E ITEEERYM +K+GLRM AFLL+GRRGVFDG +ENMH
Sbjct: 467 QIVKLERSLLLSEHPR----DRETITEEERYMFKKLGLRMDAFLLIGRRGVFDGVIENMH 522
Query: 630 LHWKHRELVKIISKQRKIEAALQEARTLEVESGGILVAVERVNKGYAIILYRGKNYERPA 689
LHWKHRELVK+I K++ AL+ A+ LE+ESGGILV V +KG AII+YRGKNY+RPA
Sbjct: 523 LHWKHRELVKLILKEKDKAIALEVAKMLEIESGGILVGVVTTSKGQAIIVYRGKNYQRPA 582
Query: 690 CLRPKTLLTKREAMKRSLEAQRRQSLKLHVLELTRNIEKLK 730
LRP++LLTKR+A+ RS E QR+++L+LH+ +L I KL+
Sbjct: 583 ELRPRSLLTKRKALARSKEIQRKKALQLHIEKLEELIMKLR 623
Score = 41.2 bits (95), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 38/69 (55%)
Query: 953 PVLAVGRSNIVTGVAKAIKAHFEKYPLAIVNVKGRAKGTSVQEVVAKLEEATGAVLVSQE 1012
P +GR+ + G+A AI ++K L + +K + T Q + +LE TG VL+S++
Sbjct: 295 PHFVLGRNRGLQGLASAILKLWQKSELVKIGLKRGVQNTRNQLMAEELERLTGGVLLSRD 354
Query: 1013 PSKVILYRG 1021
+ LYRG
Sbjct: 355 KFFITLYRG 363
>gi|297738658|emb|CBI27903.3| unnamed protein product [Vitis vinifera]
Length = 881
Score = 469 bits (1208), Expect = e-129, Method: Compositional matrix adjust.
Identities = 274/611 (44%), Positives = 369/611 (60%), Gaps = 74/611 (12%)
Query: 153 VGRQKWLAKNSKMNEKEKEVPTLAELKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVN 212
V R W +N++M E+ VP ELRRL+ + + + +++K+G AG+T+ +V+
Sbjct: 247 VERDGWGRRNTRM--AERMVPE--------HELRRLKNIALRMLERIKVGAAGVTQSLVD 296
Query: 213 GIHERWRHAEVVKIVCEDLCRLNMKRTHDSLERKTGGLVVWRSGSKIILYRGADYKY--- 269
IHE+WR EVVK+ E NMKRTH+ LE +TGGLV+WR+GS ++LYRG YK
Sbjct: 297 AIHEKWRKDEVVKLKFEGPSSCNMKRTHEILETRTGGLVIWRTGSSVVLYRGMAYKLHCV 356
Query: 270 PYFLADESSTDGAS--SDDLPNQLVDDEGLDET--KTHSSGADSAKPSGQSPTNKKVQQT 325
++ E S S D N ++ D G+ + T S +DSA
Sbjct: 357 QSYIKQERDNVNISEYSQDAANVIIQDIGVKDIVKTTESVISDSA--------------- 401
Query: 326 LIHSVGSPDKLRY-QLPGEAELVE--EADRLLDGLGPRFTDWWGYDPQPVDADLLPATVP 382
RY + E EL++ E + LLD LGPRF DW G +P PVDADLLP+ V
Sbjct: 402 -----------RYLKDLSEEELMDLSELNHLLDELGPRFKDWSGREPLPVDADLLPSVVH 450
Query: 383 GYRRPFRLLPYGVQPKLTNDEMTTLRRLGRPLPCHFALGRNRNLQGLAAAIVKLWEKCEI 442
Y+ PFRLLPYG++ L N EMT +RRL R +P HFALGR+R LQGLA A+VKLWE+ I
Sbjct: 451 EYKPPFRLLPYGMRHCLRNREMTFIRRLARTMPPHFALGRSRELQGLAMAMVKLWERSAI 510
Query: 443 AKIAVKRGAQNTNSEMMAQELKRLTGGTLLSRDREFIVFYRGKDFLPPAASSAIEERRKH 502
AKIA+KRG QNT ++ MA+ELK LTGGTL+SR++++IVFYRG DFLPP A++ERRK
Sbjct: 511 AKIAIKRGVQNTCNDRMAEELKNLTGGTLVSRNKDYIVFYRGNDFLPPHVMEALKERRK- 569
Query: 503 EFSTSNDSKEEPELGNRHDNS-----------GDNTQDEFGCTNDQKSTMHSEQKER--- 548
D +++ E RH S G T S SE E
Sbjct: 570 ----LRDLQQDEEEQARHRASALIDSKARSAKGPLVAGTLAETLAATSRWGSEPSEEDVG 625
Query: 549 ---RSAEVA-----IRRTNIRLSRVLEKKAEAEKLLAELEEE-RPEQYEVDKEGITEEER 599
R + +A +R +L+ K + EK L +++E+ P + +D E +++EER
Sbjct: 626 KMIRDSALARHASLVRYVGKKLAHAKAKLKKTEKALRKVQEDLEPAELPMDLETLSDEER 685
Query: 600 YMLRKVGLRMKAFLLMGRRGVFDGTVENMHLHWKHRELVKIISKQRKIEAALQEARTLEV 659
++ RK+GL MK FLL+G RG+FDGTVENMHLHWK+RELVKII K + A +LE
Sbjct: 686 FLFRKIGLSMKPFLLLGTRGIFDGTVENMHLHWKYRELVKIIVKGKNFAQVKHIAISLEA 745
Query: 660 ESGGILVAVERVNKGYAIILYRGKNYERPACLRPKTLLTKREAMKRSLEAQRRQSLKLHV 719
ESGG+LV+V+R KGYAII+YRGKNY+RP LRPK LLTKR+A+ RS+E QR ++LK H+
Sbjct: 746 ESGGVLVSVDRTPKGYAIIVYRGKNYQRPHALRPKNLLTKRQALARSIELQRHEALKHHI 805
Query: 720 LELTRNIEKLK 730
+L I+ LK
Sbjct: 806 SDLEERIKLLK 816
Score = 46.2 bits (108), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 46/88 (52%), Gaps = 2/88 (2%)
Query: 934 LSNRDRLLLRKQALRMKKRPVLAVGRSNIVTGVAKAIKAHFEKYPLAIVNVKGRAKGTSV 993
L NR+ +R+ A M P A+GRS + G+A A+ +E+ +A + +K + T
Sbjct: 467 LRNREMTFIRRLARTMP--PHFALGRSRELQGLAMAMVKLWERSAIAKIAIKRGVQNTCN 524
Query: 994 QEVVAKLEEATGAVLVSQEPSKVILYRG 1021
+ +L+ TG LVS+ ++ YRG
Sbjct: 525 DRMAEELKNLTGGTLVSRNKDYIVFYRG 552
>gi|359484307|ref|XP_002279505.2| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Vitis vinifera]
Length = 884
Score = 469 bits (1207), Expect = e-129, Method: Compositional matrix adjust.
Identities = 274/611 (44%), Positives = 369/611 (60%), Gaps = 74/611 (12%)
Query: 153 VGRQKWLAKNSKMNEKEKEVPTLAELKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVN 212
V R W +N++M E+ VP ELRRL+ + + + +++K+G AG+T+ +V+
Sbjct: 250 VERDGWGRRNTRM--AERMVPE--------HELRRLKNIALRMLERIKVGAAGVTQSLVD 299
Query: 213 GIHERWRHAEVVKIVCEDLCRLNMKRTHDSLERKTGGLVVWRSGSKIILYRGADYKY--- 269
IHE+WR EVVK+ E NMKRTH+ LE +TGGLV+WR+GS ++LYRG YK
Sbjct: 300 AIHEKWRKDEVVKLKFEGPSSCNMKRTHEILETRTGGLVIWRTGSSVVLYRGMAYKLHCV 359
Query: 270 PYFLADESSTDGAS--SDDLPNQLVDDEGLDET--KTHSSGADSAKPSGQSPTNKKVQQT 325
++ E S S D N ++ D G+ + T S +DSA
Sbjct: 360 QSYIKQERDNVNISEYSQDAANVIIQDIGVKDIVKTTESVISDSA--------------- 404
Query: 326 LIHSVGSPDKLRY-QLPGEAELVE--EADRLLDGLGPRFTDWWGYDPQPVDADLLPATVP 382
RY + E EL++ E + LLD LGPRF DW G +P PVDADLLP+ V
Sbjct: 405 -----------RYLKDLSEEELMDLSELNHLLDELGPRFKDWSGREPLPVDADLLPSVVH 453
Query: 383 GYRRPFRLLPYGVQPKLTNDEMTTLRRLGRPLPCHFALGRNRNLQGLAAAIVKLWEKCEI 442
Y+ PFRLLPYG++ L N EMT +RRL R +P HFALGR+R LQGLA A+VKLWE+ I
Sbjct: 454 EYKPPFRLLPYGMRHCLRNREMTFIRRLARTMPPHFALGRSRELQGLAMAMVKLWERSAI 513
Query: 443 AKIAVKRGAQNTNSEMMAQELKRLTGGTLLSRDREFIVFYRGKDFLPPAASSAIEERRKH 502
AKIA+KRG QNT ++ MA+ELK LTGGTL+SR++++IVFYRG DFLPP A++ERRK
Sbjct: 514 AKIAIKRGVQNTCNDRMAEELKNLTGGTLVSRNKDYIVFYRGNDFLPPHVMEALKERRK- 572
Query: 503 EFSTSNDSKEEPELGNRHDNS-----------GDNTQDEFGCTNDQKSTMHSEQKER--- 548
D +++ E RH S G T S SE E
Sbjct: 573 ----LRDLQQDEEEQARHRASALIDSKARSAKGPLVAGTLAETLAATSRWGSEPSEEDVG 628
Query: 549 ---RSAEVA-----IRRTNIRLSRVLEKKAEAEKLLAELEEE-RPEQYEVDKEGITEEER 599
R + +A +R +L+ K + EK L +++E+ P + +D E +++EER
Sbjct: 629 KMIRDSALARHASLVRYVGKKLAHAKAKLKKTEKALRKVQEDLEPAELPMDLETLSDEER 688
Query: 600 YMLRKVGLRMKAFLLMGRRGVFDGTVENMHLHWKHRELVKIISKQRKIEAALQEARTLEV 659
++ RK+GL MK FLL+G RG+FDGTVENMHLHWK+RELVKII K + A +LE
Sbjct: 689 FLFRKIGLSMKPFLLLGTRGIFDGTVENMHLHWKYRELVKIIVKGKNFAQVKHIAISLEA 748
Query: 660 ESGGILVAVERVNKGYAIILYRGKNYERPACLRPKTLLTKREAMKRSLEAQRRQSLKLHV 719
ESGG+LV+V+R KGYAII+YRGKNY+RP LRPK LLTKR+A+ RS+E QR ++LK H+
Sbjct: 749 ESGGVLVSVDRTPKGYAIIVYRGKNYQRPHALRPKNLLTKRQALARSIELQRHEALKHHI 808
Query: 720 LELTRNIEKLK 730
+L I+ LK
Sbjct: 809 SDLEERIKLLK 819
Score = 45.8 bits (107), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 46/88 (52%), Gaps = 2/88 (2%)
Query: 934 LSNRDRLLLRKQALRMKKRPVLAVGRSNIVTGVAKAIKAHFEKYPLAIVNVKGRAKGTSV 993
L NR+ +R+ A M P A+GRS + G+A A+ +E+ +A + +K + T
Sbjct: 470 LRNREMTFIRRLARTMP--PHFALGRSRELQGLAMAMVKLWERSAIAKIAIKRGVQNTCN 527
Query: 994 QEVVAKLEEATGAVLVSQEPSKVILYRG 1021
+ +L+ TG LVS+ ++ YRG
Sbjct: 528 DRMAEELKNLTGGTLVSRNKDYIVFYRG 555
>gi|222616258|gb|EEE52390.1| hypothetical protein OsJ_34482 [Oryza sativa Japonica Group]
Length = 560
Score = 467 bits (1202), Expect = e-128, Method: Compositional matrix adjust.
Identities = 265/569 (46%), Positives = 358/569 (62%), Gaps = 54/569 (9%)
Query: 175 LAELKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRL 234
+AEL L ELRRLR G+ L+ ++K+G AG+T IV I +RWR+ EVV+I L
Sbjct: 17 MAELTLPEAELRRLRHAGMRLKSRIKVGGAGVTREIVERIRDRWRNDEVVRIKVTGTPAL 76
Query: 235 NMKRTHDSLERKTGGLVVWRSGSKIILYRGADYKYPYFLADESSTDGASSDDLPNQLVDD 294
NM+ H+ LERKTGGLV+WRSG+ + LYRG Y P T G S +
Sbjct: 77 NMRLFHEILERKTGGLVIWRSGTSVSLYRGVAYDIP------EPTKGTSKN--------- 121
Query: 295 EGLDETKTHSSGADSAKPSGQSPT-NKKVQQT-----LIHSVGSPDKLRYQLPGEAELVE 348
T+T + +P G S N+KV + + S D L +P E + +
Sbjct: 122 -----TQTLGMKSSIKEPPGHSLLPNEKVNEMQDNNGALVSNAEKDTLVEPVP-EIKYED 175
Query: 349 EADRLLDGLGPRFTDWWGYDPQPVDADLLPATVPGYRRPFRLLPYGVQPKLTNDEMTTLR 408
E D+LLD LGPR+ DW DP PVDADLLPATVPGY+ PFR+LPYGV+P L+ + T LR
Sbjct: 176 EIDKLLDELGPRYDDWPRPDPSPVDADLLPATVPGYKPPFRVLPYGVRPSLSRRDTTNLR 235
Query: 409 RLGRPLPCHFALGRNRNLQGLAAAIVKLWEKCEIAKIAVKRGAQNTNSEMMAQELKRLTG 468
RL R LP HFALGR+R LQGLAAA+VKLWEK IAKIA+KRG Q T SE MA+++K+LTG
Sbjct: 236 RLARGLPPHFALGRSRQLQGLAAAMVKLWEKSSIAKIALKRGVQLTTSERMAEDIKKLTG 295
Query: 469 GTLLSRDREFIVFYRGKDFLPPAASSAIEERRK----------------HEFSTSNDSKE 512
G +LSR+ +F+VFYRGKDFL P + + ER + FS+ ++
Sbjct: 296 GVMLSRNNDFMVFYRGKDFLSPELAEKLLERERWAKSLQDEEQARLNAASSFSSRTEAPV 355
Query: 513 EPELGNRHDNSGDNTQDEFGCTNDQKSTMHSEQKERRSAEVA-----IRRTNIRLSRVLE 567
EP + + + ++G D+ + E K R+ E A +R+ +L +
Sbjct: 356 EPTVAGTLGETLE-ANSKYGNKLDE----NYENKMTRTVEAARHADLVRKLEWKLQLAQK 410
Query: 568 KKAEAEKLLAELEEE-RPEQYEVDKEGITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVE 626
K +AE++L ++E +P + E IT+EER+M RK+GLRMKAFLL+GRRGVFDGT+E
Sbjct: 411 KIEKAERVLGKVETALKPTEGIQPPETITDEERFMFRKLGLRMKAFLLLGRRGVFDGTIE 470
Query: 627 NMHLHWKHRELVKIISKQRKIEAALQEARTLEVESGGILVAVERVNKGYAIILYRGKNYE 686
NMHLHWK+RELVKI+ K + + A +LE ESGGILV+V++V+KGYAI+++RGK+Y
Sbjct: 471 NMHLHWKYRELVKILVKAKSFGDVKKIALSLEAESGGILVSVDKVSKGYAIVVFRGKDYA 530
Query: 687 RPACLRPKTLLTKREAMKRSLEAQRRQSL 715
RP+ LRP+ LL+KR+A+ RS+E QRR+ L
Sbjct: 531 RPSKLRPRNLLSKRKALARSIEIQRREVL 559
Score = 41.6 bits (96), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 49/88 (55%), Gaps = 2/88 (2%)
Query: 934 LSNRDRLLLRKQALRMKKRPVLAVGRSNIVTGVAKAIKAHFEKYPLAIVNVKGRAKGTSV 993
LS RD LR+ A + P A+GRS + G+A A+ +EK +A + +K + T+
Sbjct: 226 LSRRDTTNLRRLARGLP--PHFALGRSRQLQGLAAAMVKLWEKSSIAKIALKRGVQLTTS 283
Query: 994 QEVVAKLEEATGAVLVSQEPSKVILYRG 1021
+ + +++ TG V++S+ ++ YRG
Sbjct: 284 ERMAEDIKKLTGGVMLSRNNDFMVFYRG 311
>gi|449432614|ref|XP_004134094.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Cucumis sativus]
gi|449504099|ref|XP_004162252.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Cucumis sativus]
Length = 874
Score = 466 bits (1199), Expect = e-128, Method: Compositional matrix adjust.
Identities = 278/641 (43%), Positives = 385/641 (60%), Gaps = 52/641 (8%)
Query: 174 TLAELKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCR 233
+LA+L L ELRRLR L R K+KIG G+T+ +V+ IHE+W+ +E+V++
Sbjct: 231 SLAQLTLPEPELRRLRNLTFQKRHKMKIGGGGVTQAVVDVIHEKWKSSEIVRLKILGPPA 290
Query: 234 LNMKRTHDSLERKTGGLVVWRSGSKIILYRGADYKYPYFLADESSTDGASSDDLPNQLVD 293
LNMKR H+ LERKTGGLV+WRSG+ + LYRG Y+ P + ++
Sbjct: 291 LNMKRMHEILERKTGGLVIWRSGTSLSLYRGVSYELP------------EAPQFNKRIYK 338
Query: 294 DEGLDETKTHSSGADSAKPSGQSPTNKKV---QQTLIHSVGSPDKLRYQLPG-EAELVEE 349
+ T +GA + PS +S +++ V QQ + + QL + +E
Sbjct: 339 RNEI--TALPKTGASTIAPS-ESSSHRNVYALQQKRAETSIEGEHCSEQLTKVQVNYEDE 395
Query: 350 ADRLLDGLGPRFTDWWGYDPQPVDADLLPATVPGYRRPFRLLPYGVQPKLTNDEMTTLRR 409
++LLDGLGPR+TDW G DP PVDAD+LP VP Y PFR+LPYGV+ + E T L+R
Sbjct: 396 VNKLLDGLGPRYTDWPGLDPLPVDADMLPGVVPDYEPPFRILPYGVRSSIGVKEATALKR 455
Query: 410 LGRPLPCHFALGRNRNLQGLAAAIVKLWEKCEIAKIAVKRGAQNTNSEMMAQELKRLTGG 469
L R LP HFALGRNR LQGLA A+ KLWE+ IAKIA+KRG Q T SE MA+E+K+LTGG
Sbjct: 456 LARRLPPHFALGRNRQLQGLAIAMTKLWERSLIAKIALKRGVQLTTSERMAEEIKKLTGG 515
Query: 470 TLLSRDREFIVFYRGKDFLPPAASSAIEERRKHEFSTSNDSKEEPELG--------NRHD 521
LLSR+++F+VFYRGK FL P + A+ ER + S D +E+ L + +
Sbjct: 516 MLLSRNKDFLVFYRGKSFLSPEVTEALLERERLAKSL-QDKEEQARLKASAFVVPIEKTE 574
Query: 522 NSG-----DNTQD---EFGCTNDQKSTMHSEQKERRSAEV----AIRRTNIRLSRVLEKK 569
SG + T D +G D K H E R + ++ +R+ +L+ K
Sbjct: 575 QSGTAGSLEETLDADARWGKALDDK---HKENVMREAEQLRHTDLVRKLERKLAFAERKL 631
Query: 570 AEAEKLLAELEE-ERPEQYEVDKEGITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVENM 628
+AE+ LA++E P + + + + ITEEER+M RK+GLRMKAFLL+GRR VFDGTVENM
Sbjct: 632 VKAERTLAKVEAFMTPAKRQAEPDSITEEERFMFRKLGLRMKAFLLLGRREVFDGTVENM 691
Query: 629 HLHWKHRELVKIISKQRKIEAALQEARTLEVESGGILVAVERVNKGYAIILYRGKNYERP 688
HLHWK+RELVKI+ K + A LE ESGG+LV++++V+KGYAII+YRGK+Y+RP
Sbjct: 692 HLHWKYRELVKIMIKANSFDHVKNIALQLEAESGGVLVSIDKVSKGYAIIVYRGKDYKRP 751
Query: 689 ACLRPKTLLTKREAMKRSLEAQRRQSLKLHVLELTRNIEKL-----KLQLVKDKEANSLE 743
+ LRPK LLTKR+A+ RS+E QR ++L H+ + + KL +++ VKD+ L
Sbjct: 752 SLLRPKNLLTKRKALARSIELQRHEALLKHISAMQSKVGKLNSEIEQMEKVKDQGDEVLY 811
Query: 744 TIDESILPL---VKEEIGDMQPAECMRSDTSHEVNVQARGE 781
+S P ++E D A SD E ++ A E
Sbjct: 812 NTLDSAYPTDNDSEDENSDTYEAYDQDSDVEDEDDIMASDE 852
>gi|255582755|ref|XP_002532154.1| conserved hypothetical protein [Ricinus communis]
gi|223528164|gb|EEF30228.1| conserved hypothetical protein [Ricinus communis]
Length = 745
Score = 466 bits (1198), Expect = e-128, Method: Compositional matrix adjust.
Identities = 255/565 (45%), Positives = 360/565 (63%), Gaps = 48/565 (8%)
Query: 171 EVPTLAELKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCED 230
+ PTLAEL + +ELRRLR +G+ LR+++ + KAG+T+ +V IH++WR E+V++ +
Sbjct: 201 KAPTLAELTIEDEELRRLRRMGMFLRERVNVPKAGLTKEVVEKIHDKWRKNELVRLKFHE 260
Query: 231 LCRLNMKRTHDSLERKTGGLVVWRSGSKIILYRGADYKYPYFLADESSTDGASSDDLPNQ 290
+ +MK H+ ER+TGGLV+WR+GS +++YRG+ Y+ P S T Q
Sbjct: 261 VLAHDMKTAHEITERRTGGLVIWRAGSVMVVYRGSSYEGP-----PSKT----------Q 305
Query: 291 LVDDEG--LDETKTHSSGADSAKPSGQSPTNKKVQQTLIHSVGSPDKLRYQLPGEAELVE 348
V+ EG L S+G+++ K +P+ + ++ + + + E E+
Sbjct: 306 PVNREGDALFIPDVSSAGSETMKGDNVAPSAAEKRELAMRRLDHSKDM-----TEEEI-- 358
Query: 349 EADRLLDGLGPRFTDWWGYDPQPVDADLLPATVPGYRRPFRLLPYGVQPKLTNDEMTTLR 408
E D LD LGPRF +WWG PVDADLLP +P Y+ PFRLLP G++ +LTN EMT LR
Sbjct: 359 EYDSFLDSLGPRFEEWWGTGILPVDADLLPPKIPDYKTPFRLLPTGMRSRLTNAEMTNLR 418
Query: 409 RLGRPLPCHFALGRNRNLQGLAAAIVKLWEKCEIAKIAVKRGAQNTNSEMMAQELKRLTG 468
+L + LPCHFALGRNRN QGLA+ I+K+WEK +AKIAVKRG QNTN+++MA ELK LTG
Sbjct: 419 KLAKKLPCHFALGRNRNHQGLASTILKVWEKSLVAKIAVKRGIQNTNNKLMADELKMLTG 478
Query: 469 GTLLSRDREFIVFYRGKDFLPPAASSAIEER----------------RKHEFSTSNDSKE 512
G LL R++ +IV YRGKDFLP + ++A+ ER R+ E S + +
Sbjct: 479 GVLLLRNKYYIVIYRGKDFLPTSVAAALTERQELTKKIQDVEEKVRSREIEAVPSKEEEG 538
Query: 513 EPELGNRHDNSGDNTQDEFG---CTNDQKSTMHSEQKERRSAEVAIRRTNIRLSRVLEKK 569
+P G + Q +G D++ + + + +R+ ++R +L+ KK
Sbjct: 539 KPLAGTLAEFY--EAQSRWGKDTSAEDREKMIEDDTRAKRAR--IVKRIEHKLAVAQAKK 594
Query: 570 AEAEKLLAELEEER-PEQYEVDKEGITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVENM 628
AE+LLA++E P + D+E IT+EER + R++GLRMKA+L +G RGVFDG +ENM
Sbjct: 595 LRAERLLAKIEVSMLPSGPDYDQETITDEERAVFRRIGLRMKAYLPLGIRGVFDGVIENM 654
Query: 629 HLHWKHRELVKIISKQRKIEAALQEARTLEVESGGILVAVERVNKGYAIILYRGKNYERP 688
HLHWKHRELVK+ISKQ+ + A AR LE ESGGILVA+ERV KG+A+I YRGKNY RP
Sbjct: 655 HLHWKHRELVKLISKQKTLAFAEDTARLLEYESGGILVAIERVPKGFALIYYRGKNYRRP 714
Query: 689 ACLRPKTLLTKREAMKRSLEAQRRQ 713
LRP+ LLTK +A+KRS+ QR +
Sbjct: 715 INLRPRNLLTKAKALKRSVAMQRHE 739
>gi|222632479|gb|EEE64611.1| hypothetical protein OsJ_19463 [Oryza sativa Japonica Group]
Length = 601
Score = 465 bits (1197), Expect = e-128, Method: Compositional matrix adjust.
Identities = 257/564 (45%), Positives = 353/564 (62%), Gaps = 51/564 (9%)
Query: 195 LRKKLKIGKAGITEGIVNGIHERWRHAEVVKI-VCEDLCRLNMKRTHDSLERKTGGLVVW 253
LR ++ + KAG+T+ + IH+ WR +E+V++ EDL +MK H+ +ER+TGGL++W
Sbjct: 3 LRDRITVPKAGVTQAVTEKIHDAWRKSELVRLKFHEDLAH-DMKTAHELVERRTGGLIIW 61
Query: 254 RSGSKIILYRGADYKYPYFLADESSTDGASSDDLPNQLVDDEGLDETKTHSSGADSAK-- 311
RSGS +++YRG++YK P + E LD + GAD
Sbjct: 62 RSGSVMVVYRGSNYKRP---------------------LKSETLDGNSSAVKGADGTLFI 100
Query: 312 PSGQSPTNKKVQQTLIHSVGSPDKLRYQLPGEAELVEEA---DRLLDGLGPRFTDWWGYD 368
P SPT Q +++ R + ++ EE +++LD LGPRF DWWG
Sbjct: 101 PDASSPTEHDSQGKDVNT-QREIAARLNMQNTEDMTEEELEFNQMLDELGPRFVDWWGTG 159
Query: 369 PQPVDADLLPATVPGYRRPFRLLPYGVQPKLTNDEMTTLRRLGRPLPCHFALGRNRNLQG 428
PVDADLLP T+PGY+ PFRLLP G++ LTN E+T LR+L R LPCHFALGRNRN QG
Sbjct: 160 ILPVDADLLPQTIPGYKTPFRLLPTGMRLTLTNAELTNLRKLARDLPCHFALGRNRNHQG 219
Query: 429 LAAAIVKLWEKCEIAKIAVKRGAQNTNSEMMAQELKRLTGGTLLSRDREFIVFYRGKDFL 488
LAAAIVKLWEK + KIAVKRG QNTN+++M++E+K LTGGTLL R++ +IV YRGKDFL
Sbjct: 220 LAAAIVKLWEKSLVVKIAVKRGIQNTNNKLMSEEIKNLTGGTLLLRNKYYIVIYRGKDFL 279
Query: 489 PPAASSAIEERRKHEFSTSNDSKEEPELGNRH--DNSGD-----NTQDEFGCTNDQ--KS 539
P + ++A+ ER + N +++ + H D+S D T EF + +
Sbjct: 280 PTSVAAALAEREELTKDIQNVEEQKRCIPVVHSMDDSLDGHALAGTLAEFQEAQARWGRE 339
Query: 540 TMHSEQKERRSA------EVAIRRTNIRLSRVLEKKAEAEKLLAELEEE----RPEQYEV 589
EQ+E + A E +R +LS K AE+LL+++E P
Sbjct: 340 VTAKEQEEMKEASSRSVKEKLFKRLEHKLSIAQAKIHRAERLLSKIEASMVLANPSD--- 396
Query: 590 DKEGITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVENMHLHWKHRELVKIISKQRKIEA 649
DKE IT+EER + R++GLR+KA+L +G RGVFDG +ENMHLHWKHRE+VK+I+KQ+ +
Sbjct: 397 DKEMITDEERSVFRRIGLRLKAYLPVGIRGVFDGVIENMHLHWKHREVVKLITKQKTLPF 456
Query: 650 ALQEARTLEVESGGILVAVERVNKGYAIILYRGKNYERPACLRPKTLLTKREAMKRSLEA 709
+ AR LE ESGGILVA+ERV KGYA+I YRGKNY RP +RP+ LLTK +A+KR++
Sbjct: 457 VEETARLLEYESGGILVAIERVTKGYALIFYRGKNYRRPINIRPRNLLTKAKALKRAVAM 516
Query: 710 QRRQSLKLHVLELTRNIEKLKLQL 733
QR ++L H+ EL NI ++KL L
Sbjct: 517 QRHEALSQHIAELENNIRQMKLDL 540
Score = 57.0 bits (136), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 49/87 (56%), Gaps = 4/87 (4%)
Query: 188 LRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRTHDSLERKT 247
R +G+ L+ L +G G+ +G++ +H W+H EVVK++ + ++ T LE ++
Sbjct: 409 FRRIGLRLKAYLPVGIRGVFDGVIENMHLHWKHREVVKLITKQKTLPFVEETARLLEYES 468
Query: 248 GGLVV----WRSGSKIILYRGADYKYP 270
GG++V G +I YRG +Y+ P
Sbjct: 469 GGILVAIERVTKGYALIFYRGKNYRRP 495
>gi|326492672|dbj|BAJ90192.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 879
Score = 464 bits (1194), Expect = e-127, Method: Compositional matrix adjust.
Identities = 257/578 (44%), Positives = 369/578 (63%), Gaps = 32/578 (5%)
Query: 175 LAELKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRL 234
+AEL L ELRRLR + ++ K ++G AG+T IV I E+WR EVV++ L
Sbjct: 180 MAELTLPEPELRRLRHAAMRIKSKTQVGGAGVTREIVAKIKEKWRTDEVVRVKVNGTPAL 239
Query: 235 NMKRTHDSLERKTGGLVVWRSGSKIILYRGADYKYPYFLADESSTDGASSDDLPNQLVDD 294
NM+ H+ LERKTGGLV+WRSG+ + LYRG Y P +T G N+ D
Sbjct: 240 NMRLFHEILERKTGGLVIWRSGTSVSLYRGVAYDVP------DTTKGT------NRTWQD 287
Query: 295 EGLDETKTHSSGADSAKPSGQSPTNKKVQQTLIHSVGSPDKLRYQLPGEAELVEEADRLL 354
G+ ++ S+ P+ + + + L+ + + + +P E + EE RLL
Sbjct: 288 VGM-KSSIKGPPIPSSIPNEKVNSMQGSNGGLVSNTEKEEAIE-TVP-EIKYEEEIGRLL 344
Query: 355 DGLGPRFTDWWGYDPQPVDADLLPATVPGYRRPFRLLPYGVQPKLTNDEMTTLRRLGRPL 414
D LGPR++DW G +P PVDADLLPAT+PGY+ PFR+LPYGV+ L+ + T LRRL R L
Sbjct: 345 DELGPRYSDWPGSNPLPVDADLLPATIPGYKPPFRVLPYGVRRSLSRKDTTNLRRLARGL 404
Query: 415 PCHFALGRNRNLQGLAAAIVKLWEKCEIAKIAVKRGAQNTNSEMMAQELKRLTGGTLLSR 474
P HFALGR+R LQGLAAA+VKLWE+ IAK+A+KRG Q T SE MA+++K+LTGG +LSR
Sbjct: 405 PPHFALGRSRQLQGLAAAMVKLWERSSIAKVALKRGVQLTTSERMAEDIKKLTGGVMLSR 464
Query: 475 DREFIVFYRGKDFLPPAASSAIEERRKHEFSTSNDSKEEPELGNRHDNSGD-----NTQD 529
+ +F+VFYRGKDFL + A+ ER + S ++ + +S +
Sbjct: 465 NNDFVVFYRGKDFLSTELAEALLERERSMKSLQDEEQARLNAKLSFTSSTEAFIESTVAG 524
Query: 530 EFGCTNDQKSTMHSE------QKERRSAEVA-----IRRTNIRLSRVLEKKAEAEKLLAE 578
G T + S +E K R+ E A +R+ +L+ ++ A+AE++L +
Sbjct: 525 TLGETLEANSKYGNELVDNHVDKMTRTVEAAKHADLVRKLEWKLALAEKRIAKAERVLGK 584
Query: 579 LEEE-RPEQYEVDKEGITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVENMHLHWKHREL 637
+E +P + E IT+EER+M RK+GLRMKAFLL+GRRGVFDGT+ENMHLHWK+REL
Sbjct: 585 VETALKPTEDTKPPETITDEERFMFRKLGLRMKAFLLLGRRGVFDGTIENMHLHWKYREL 644
Query: 638 VKIISKQRKIEAALQEARTLEVESGGILVAVERVNKGYAIILYRGKNYERPACLRPKTLL 697
VKI+ K + + A +LEVESGG+LV+V++V+KGYAI+++RGK+Y+RP+ LRP+ LL
Sbjct: 645 VKILVKAKSFADVKRTALSLEVESGGVLVSVDKVSKGYAIVVFRGKDYKRPSMLRPRNLL 704
Query: 698 TKREAMKRSLEAQRRQSLKLHVLELTRNIEKLKLQLVK 735
+KR+A+ RS+E QR ++L H+ +L R + +L+ +LV+
Sbjct: 705 SKRKALARSIELQRMEALGRHIEKLNRRVNQLRSELVQ 742
Score = 42.7 bits (99), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 49/88 (55%), Gaps = 2/88 (2%)
Query: 934 LSNRDRLLLRKQALRMKKRPVLAVGRSNIVTGVAKAIKAHFEKYPLAIVNVKGRAKGTSV 993
LS +D LR+ A + P A+GRS + G+A A+ +E+ +A V +K + T+
Sbjct: 389 LSRKDTTNLRRLARGLP--PHFALGRSRQLQGLAAAMVKLWERSSIAKVALKRGVQLTTS 446
Query: 994 QEVVAKLEEATGAVLVSQEPSKVILYRG 1021
+ + +++ TG V++S+ V+ YRG
Sbjct: 447 ERMAEDIKKLTGGVMLSRNNDFVVFYRG 474
>gi|297800788|ref|XP_002868278.1| hypothetical protein ARALYDRAFT_330061 [Arabidopsis lyrata subsp.
lyrata]
gi|297314114|gb|EFH44537.1| hypothetical protein ARALYDRAFT_330061 [Arabidopsis lyrata subsp.
lyrata]
Length = 919
Score = 462 bits (1189), Expect = e-127, Method: Compositional matrix adjust.
Identities = 298/759 (39%), Positives = 425/759 (55%), Gaps = 131/759 (17%)
Query: 66 SAIQRIADKLRSLGIVEQTTSKDDTLNPE--PETRATDNAGEIFIPLPHRIPKYRVGHTI 123
S +++I +KL+ G V+ +D + E E RA ++ + + R G +
Sbjct: 114 STMEKIVEKLKKYGFVDDDQFQDKEVEQERRIEERAVEDR--------FYVKEGRGGFS- 164
Query: 124 DDSWSTPENPVPVPGTGAAIVRYNQLN----KEVGRQKWLAKNSKMNEKEKEVPTLAELK 179
E+P V G + +++ KE+ +W AK KE +LAE
Sbjct: 165 ------EESPFGVFGGNEVKFPWEKVSSMEKKELVNGEWTAK------KESRY-SLAERT 211
Query: 180 LSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRT 239
LS EL RLR + + K+++ AG+T+ +V+ I E+W+ +E+V++ E LNM+R
Sbjct: 212 LSESELNRLRNVMFRTKSKMRVTGAGVTQAVVDAIQEKWKSSEIVRLKIEGASALNMRRM 271
Query: 240 HDSLERKTGGLVVWRSGSKIILYRGADYKYPYFLADESSTDGASSDDLPNQLVDDEGLDE 299
H+ LERKTGGLV+WRSG+ I LY +YK ++ DG S ++ Q+
Sbjct: 272 HEILERKTGGLVIWRSGTSIALY---NYK------GGNNRDG--SGNMNKQIY------- 313
Query: 300 TKTHSSGADSAKPSGQSPTNKKVQQTLIH---------SVGSPDKLRYQLPGEAELVEEA 350
+ S+ P+ S ++ VQ L+H VG+ D+ P E E +E
Sbjct: 314 --RRAETLQSSLPTNTSTVDQSVQ--LVHLPQLEKEPTVVGNKDRTS---PHEVEYEDEI 366
Query: 351 DRLLDGLGPRFTDWWGYDPQPVDADLLPATVPGYRRPFRLLPYGVQPKLTNDEMTTLRRL 410
+ LL+GLGPR+TDW G P PVDADLLP VP Y PFR+LPYGV+ L E T+LRR+
Sbjct: 367 NELLEGLGPRYTDWQGGYPLPVDADLLPGIVPVYEPPFRVLPYGVRSTLGTKEATSLRRI 426
Query: 411 GRPLPCHFALGRNRNLQGLAAAIVKLWEKCEIAKIAVKRGAQNTNSEMMAQELKR----- 465
LP HFALGR+R LQGLA A+VKLW+K IAK+A+KRG Q T SE MA+++K
Sbjct: 427 ATVLPPHFALGRSRQLQGLATAMVKLWQKSLIAKVALKRGVQLTTSERMAEDIKVIRIHI 486
Query: 466 --------LTGGTLLSRDREFIVFYRGKDFLPPAASSAIEERRKHEFSTSNDSKEEPELG 517
LTGG LLSR+++F+VFYRGK FL P + A+ E+ + T D +E+ L
Sbjct: 487 RVTFDCLILTGGMLLSRNKDFLVFYRGKSFLSPEVAEALMEKERL-VRTLQDEEEQARLR 545
Query: 518 ----------NRHDNSGDNTQDE-------------------------FGCT-------- 534
+ N QDE G T
Sbjct: 546 ASSALVVPSIKANQNLARTLQDEEKQSRPSTLVVPSTKANQNLVSAGTLGETLDATGKWG 605
Query: 535 -----NDQKSTMHSEQKERRSAEVAIRRTNIRLSRVLEKKAEAEKLLAELEEE-RPEQYE 588
+D M E + RSA++ +R+ +L+ +K +AE+ LA++EE +P +
Sbjct: 606 KSLDNDDHVEEMKQEVERMRSAKL-VRKLERKLAFAEKKLLKAERALAKVEESLKPAEQR 664
Query: 589 VDKEGITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVENMHLHWKHRELVKIISKQRKIE 648
D EGITEEER+M +K+GLRMKAFLL+GRRGVFDGTVENMHLHWK+REL+KI+ K + +E
Sbjct: 665 TDLEGITEEERFMFQKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELIKILVKAKSLE 724
Query: 649 AALQEARTLEVESGGILVAVERVNKGYAIILYRGKNYERPACLRPKTLLTKREAMKRSLE 708
A + A LE ESGGILV+V++++KGYA+I+YRGK+Y+RP LRPK LLTKR+A+ RSLE
Sbjct: 725 GAKKVAMALEAESGGILVSVDKISKGYAVIVYRGKDYKRPTTLRPKNLLTKRKALARSLE 784
Query: 709 AQRRQSLKLHVLELTRNIEKLK-----LQLVKDKEANSL 742
Q+R++L H+ + E+L+ ++LVKDK +L
Sbjct: 785 LQKREALIKHIEAVQTRSEQLRAEIEQVELVKDKGDEAL 823
>gi|334186525|ref|NP_193187.3| CRM family member 3B [Arabidopsis thaliana]
gi|332658053|gb|AEE83453.1| CRM family member 3B [Arabidopsis thaliana]
Length = 907
Score = 462 bits (1189), Expect = e-127, Method: Compositional matrix adjust.
Identities = 296/735 (40%), Positives = 424/735 (57%), Gaps = 101/735 (13%)
Query: 68 IQRIADKLRSLGIVEQTTSKDDTLNPEPETRATDNAGEIFIPLPHRIPKYRVGHTIDDSW 127
+++I +KL+ G V++ +D + E E R ++ E + R R G +
Sbjct: 125 MEKIVEKLKKYGFVDEDQFQDKEV--EQERRIEKSSVEERFYVEER----RGGFS----- 173
Query: 128 STPENPVPVPGTGAAIVRY------NQLNKEVGRQKWLAKNSKMNEKEKEVPTLAELKLS 181
E+P V G G V++ + KE+ +W AK KE +LAE+ LS
Sbjct: 174 --EESPFGVYG-GNDEVKFPWEKVSSMEKKELVNGEWTAK------KESRY-SLAEMTLS 223
Query: 182 GKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRTHD 241
EL RLR + + K+++ AG+T+ +V+ I E+W+ +E+V++ E LNM+R H+
Sbjct: 224 EFELNRLRNVMFRTKSKMRVTGAGVTQAVVDAIQEKWKGSEIVRLKIEGSSALNMRRMHE 283
Query: 242 SLERKTGGLVVWRSGSKIILYRGADYKYPYFLADESSTDGASSDDLPNQLVDDEGLDETK 301
LERKTGGLV+WRSG+ I LY +YK S+ DG S ++ Q+ +
Sbjct: 284 ILERKTGGLVIWRSGTSIALY---NYK------GGSNRDG--SGNMNKQVYRRAERLPSS 332
Query: 302 THSSGADSAKPSGQSPTNKKVQQTLIHSVGSPDKLRYQLPGEAELVEEADRLLDGLGPRF 361
+S D + P +K + T+ VG+ D+ P E E +E + LL+GLGPR+
Sbjct: 333 LPTSTVDQSVQLVNLPQLEK-EPTV---VGNKDRTS---PQEVEYEDEINELLEGLGPRY 385
Query: 362 TDWWGYDPQPVDADLLPATVPGYRRPFRLLPYGVQPKLTNDEMTTLRRLGRPLPCHFALG 421
TDW G P PVDADLLP VPGY PFR LPYGV+ L E T+LRR+ LP HFALG
Sbjct: 386 TDWQGGYPLPVDADLLPGIVPGYEPPFRALPYGVRSTLGTKEATSLRRIATVLPPHFALG 445
Query: 422 RNRNLQGLAAAIVKLWEKCEIAKIAVKRGAQNTNSEMMAQELKRLTGGTLLSRDREFIVF 481
R+R LQGLA A+VKLW+K IAK+A+KRG Q T SE MA+++KRLTGG LLSR+++F+VF
Sbjct: 446 RSRQLQGLATAMVKLWQKSLIAKVALKRGVQLTTSERMAEDIKRLTGGMLLSRNKDFLVF 505
Query: 482 YRGKDFLPPAASSAIEERRKHEFSTSNDSKEEPEL------------------------- 516
YRGK FL A+ E ++ T D +E+ L
Sbjct: 506 YRGKSFLSLEVGEALME-KEMLVRTLQDEEEQARLRASSALVVPSIKANQQLARTLQDKE 564
Query: 517 --------------GNRHDNSGDNTQDEFGCT---------NDQKSTMHSEQKERRSAEV 553
N++ S + T +D M E ++ RSA++
Sbjct: 565 EQARPSALVLPSTKANQNLVSAGTLGETLDATGKWGKNLDNDDHVEEMKQEVEKVRSAKL 624
Query: 554 AIRRTNIRLSRVLEKKAEAEKLLAELEEE-RPEQYEVDKEGITEEERYMLRKVGLRMKAF 612
+R+ +L+ +K +AE+ LA++EE +P + D EGITEEER+M +K+GL+MKAF
Sbjct: 625 -VRKLERKLAFAEKKLLKAERALAKVEESLKPAEQRTDLEGITEEERFMFQKLGLKMKAF 683
Query: 613 LLMGRRGVFDGTVENMHLHWKHRELVKIISKQRKIEAALQEARTLEVESGGILVAVERVN 672
LL+GRRGVFDGTVENMHLHWK+REL+KI+ K + +E A + A LE ESGGILV+V++++
Sbjct: 684 LLLGRRGVFDGTVENMHLHWKYRELIKILVKAKTLEGAQKVAMALEAESGGILVSVDKIS 743
Query: 673 KGYAIILYRGKNYERPACLRPKTLLTKREAMKRSLEAQRRQSLKLHVLELTRNIEKLK-- 730
KGYA+I+YRGK+Y+RP LRPK LLTKR+A+ RSLE Q+R++L H+ + E+L+
Sbjct: 744 KGYAVIVYRGKDYKRPTTLRPKNLLTKRKALARSLELQKREALIKHIEAIQTRSEQLRAE 803
Query: 731 ---LQLVKDKEANSL 742
++LVKDK +L
Sbjct: 804 IEQVELVKDKGDETL 818
>gi|334187011|ref|NP_194704.2| CRS1 / YhbY (CRM) domain-containing protein [Arabidopsis thaliana]
gi|332660271|gb|AEE85671.1| CRS1 / YhbY (CRM) domain-containing protein [Arabidopsis thaliana]
Length = 841
Score = 457 bits (1177), Expect = e-125, Method: Compositional matrix adjust.
Identities = 268/595 (45%), Positives = 355/595 (59%), Gaps = 63/595 (10%)
Query: 158 WLAKNSKMNEKEKEVPTLAELKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHER 217
W + S E E+ VP EL+RLR + + + +++K+G AGIT+ +V IHE+
Sbjct: 230 WRTRKSNTVEAERIVPE--------HELKRLRNVALRMVERVKVGSAGITQALVEAIHEK 281
Query: 218 WRHAEVVKIVCEDLCRLNMKRTHDSLERKTGGLVVWRSGSKIILYRGADYKYPYFLADES 277
W EVVK+ + LNMKRTH+ LE+KTGGLV+WRSGS ++LYRG YK +
Sbjct: 282 WEVDEVVKLKFSEPYSLNMKRTHEVLEKKTGGLVIWRSGSSVVLYRGISYKL------KC 335
Query: 278 STDGASSDDLPNQLVDDEGLDETKTHSSGADSAKPSGQSPTNKKVQQTLIHSVGSPDKLR 337
++L E E D + G P N +Q
Sbjct: 336 VQTFIKQNNL-------EANPEIHRSVEARDYVQEDGNYPKNVPKEQL------------ 376
Query: 338 YQLPGEAELVEEADRLLDGLGPRFTDWWGYDPQPVDADLLPATVPGYRRPFRLLPYGVQP 397
+EL E D LLD +GPRF DW G P PVDADLLP V GYR PFR+LP GV+P
Sbjct: 377 ------SELCELND-LLDEVGPRFHDWTGCAPFPVDADLLPGYVEGYRCPFRILPQGVKP 429
Query: 398 KLTNDEMTTLRRLGRPLPCHFALGRNRNLQGLAAAIVKLWEKCEIAKIAVKRGAQNTNSE 457
L+N EMT +RRL R P HFALGR+R LQGLA A+VKLW K IAKIA+KRG +NT +E
Sbjct: 430 CLSNTEMTEMRRLARTSPPHFALGRSRELQGLAKAMVKLWAKSAIAKIAIKRGVENTRNE 489
Query: 458 MMAQELKRLTGGTLLSRDREFIVFYRGKDFLPPAASSAIEERRKHEFSTSNDSKEEP--E 515
MA+ELKRLT G L+SR++E+IVFYRG DF+PPA + A+ ER+K E + +KE+ E
Sbjct: 490 RMAEELKRLTRGVLVSRNKEYIVFYRGNDFMPPAVAEALTERQK-EITEVLQAKEDQARE 548
Query: 516 LGNRHDN-----SGDNTQDEFGCTND----------QKSTMHSEQKERRSAEVA----IR 556
+ + TQ G + S++ E+ +R SA + IR
Sbjct: 549 MASTRATLTSQAKSPKTQLLAGTLAETIAASSRWAPNASSVDIEELKRESASIKRAALIR 608
Query: 557 RTNIRLSRVLEKKAEAEKLLAELEEE-RPEQYEVDKEGITEEERYMLRKVGLRMKAFLLM 615
+RL +K AE+ LA+++++ P + D E ITEEER + RK+GL M FLL+
Sbjct: 609 DLELRLLYGKQKLRRAERDLAKVQKDLDPSELPTDSEIITEEERLLYRKIGLSMDPFLLL 668
Query: 616 GRRGVFDGTVENMHLHWKHRELVKIISKQRKIEAALQEARTLEVESGGILVAVERVNKGY 675
GRR V+DGT+ENMHLHWKHRELVK+I + + + A +LE ESGG+LV+V++ KGY
Sbjct: 669 GRREVYDGTIENMHLHWKHRELVKVIVRGKSLPQVKHIAISLEAESGGVLVSVDKTMKGY 728
Query: 676 AIILYRGKNYERPACLRPKTLLTKREAMKRSLEAQRRQSLKLHVLELTRNIEKLK 730
AIILYRGKNY+ P LRP LLT+++A RS+E QRR++LK HV +L IE LK
Sbjct: 729 AIILYRGKNYQMPFRLRPSNLLTRKKAFARSIELQRREALKYHVADLEERIELLK 783
Score = 62.0 bits (149), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 75/142 (52%), Gaps = 10/142 (7%)
Query: 141 AAIVRYNQLNKEVGRQKWLAKNSKMNEKEK-----EVPTLAELKLSGKELRRLRTLGIGL 195
AA++R +L G+QK + + +K E+PT +E+ ++ +E R +G+ +
Sbjct: 604 AALIRDLELRLLYGKQKLRRAERDLAKVQKDLDPSELPTDSEI-ITEEERLLYRKIGLSM 662
Query: 196 RKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRTHDSLERKTGGLVV--- 252
L +G+ + +G + +H W+H E+VK++ +K SLE ++GG++V
Sbjct: 663 DPFLLLGRREVYDGTIENMHLHWKHRELVKVIVRGKSLPQVKHIAISLEAESGGVLVSVD 722
Query: 253 -WRSGSKIILYRGADYKYPYFL 273
G IILYRG +Y+ P+ L
Sbjct: 723 KTMKGYAIILYRGKNYQMPFRL 744
Score = 45.4 bits (106), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 48/92 (52%), Gaps = 7/92 (7%)
Query: 934 LSNRDRLLLRKQALRMKKRPVLAVGRSNIVTGVAKAIKAHFEKYPLAIVNVKGRAKGTSV 993
++ +RLL RK L M P L +GR + G + + H++ L V V+G++ V
Sbjct: 647 ITEEERLLYRKIGLSMD--PFLLLGRREVYDGTIENMHLHWKHRELVKVIVRGKSL-PQV 703
Query: 994 QEVVAKLEEATGAVLVSQEPS----KVILYRG 1021
+ + LE +G VLVS + + +ILYRG
Sbjct: 704 KHIAISLEAESGGVLVSVDKTMKGYAIILYRG 735
Score = 41.6 bits (96), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 38/69 (55%)
Query: 953 PVLAVGRSNIVTGVAKAIKAHFEKYPLAIVNVKGRAKGTSVQEVVAKLEEATGAVLVSQE 1012
P A+GRS + G+AKA+ + K +A + +K + T + + +L+ T VLVS+
Sbjct: 448 PHFALGRSRELQGLAKAMVKLWAKSAIAKIAIKRGVENTRNERMAEELKRLTRGVLVSRN 507
Query: 1013 PSKVILYRG 1021
++ YRG
Sbjct: 508 KEYIVFYRG 516
>gi|357500379|ref|XP_003620478.1| Chloroplastic group IIA intron splicing facilitator CRS1 [Medicago
truncatula]
gi|355495493|gb|AES76696.1| Chloroplastic group IIA intron splicing facilitator CRS1 [Medicago
truncatula]
Length = 820
Score = 456 bits (1173), Expect = e-125, Method: Compositional matrix adjust.
Identities = 257/581 (44%), Positives = 355/581 (61%), Gaps = 46/581 (7%)
Query: 173 PTLAELKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLC 232
P+LAEL L + LRRLR G+ LR+++ + KAG+T+ ++ IHE WR E+V++ +
Sbjct: 206 PSLAELTLEDELLRRLRREGMHLRERVSVPKAGLTQEVMEKIHESWRKKELVRLKFHEEL 265
Query: 233 RLNMKRTHDSLERKTGGLVVWRSGSKIILYRGADYKYPYFL-ADESSTDGASSDDLPNQL 291
NM+ H +ER+TGGLV WR+GS +I+YRG +Y+ P D DG D+
Sbjct: 266 AKNMRIAHQIVERRTGGLVTWRAGSVMIVYRGKNYQGPASPELDVKEGDGFFVPDV---- 321
Query: 292 VDDEGLDETKTHSSGADSAKPSGQSPTNKKVQQTLIHSVGSPDKLRYQLPGEAELVEEAD 351
SSG+ S + ++ + + + +V P+K+ E E +
Sbjct: 322 ------------SSGSLSKTKDSNATSSLENSEQVGRNVELPEKM-------TEEEAEYN 362
Query: 352 RLLDGLGPRFTDWWGYDPQPVDADLLPATVPGYRRPFRLLPYGVQPKLTNDEMTTLRRLG 411
LLD LGPRF WWG PVDADLLP VPGY+ P+RLLP G++ +LT EMT LR++
Sbjct: 363 ALLDDLGPRFVGWWGTGIPPVDADLLPREVPGYKTPYRLLPTGMRSRLTGAEMTDLRKIA 422
Query: 412 RPLPCHFALGRNRNLQGLAAAIVKLWEKCEIAKIAVKRGAQNTNSEMMAQELKRLTGGTL 471
+ LPCHFALGRNRN QGLA AI+KLWE+ IAKIAVK G QNTN+++MA EL LTGGTL
Sbjct: 423 KSLPCHFALGRNRNHQGLACAILKLWERSLIAKIAVKPGIQNTNNKLMADELSTLTGGTL 482
Query: 472 LSRDREFIVFYRGKDFLPPAASSAIEERRKHEFSTSNDSKEE----------PELGNRHD 521
L R+R +IV YRGKDF+P ++ + ER+ E + EE P +
Sbjct: 483 LLRNRFYIVIYRGKDFVPTGVAAVLAERQ--ELTKQVQDVEEKVRCKAVVATPSVQGEAT 540
Query: 522 NSGDNTQDEFGCTNDQKSTMHSEQKERRSAEVAIRRTNIRLSRVLEKKAE--------AE 573
+ + + + SE+ ER E A + N++L + +E K AE
Sbjct: 541 APAGSLAEFYEAQARWGRDVSSEEHERMIKE-ATKAKNVKLVKQIEHKISLAANKLHRAE 599
Query: 574 KLLAELEEER-PEQYEVDKEGITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVENMHLHW 632
+LLA++E P + D+E IT+EER + R++GLRMKA+L +G RGVFDG +ENMHLHW
Sbjct: 600 RLLAKIESSMVPVGPDYDQETITDEERVVFRQIGLRMKAYLQLGIRGVFDGVIENMHLHW 659
Query: 633 KHRELVKIISKQRKIEAALQEARTLEVESGGILVAVERVNKGYAIILYRGKNYERPACLR 692
KHRELVK+++KQ+ AR LE ESGGILVA+E+V+K +AII YRGKNY+RP LR
Sbjct: 660 KHRELVKLVTKQKNRAFVEDTARLLEYESGGILVAIEKVSKEFAIIYYRGKNYKRPLTLR 719
Query: 693 PKTLLTKREAMKRSLEAQRRQSLKLHVLELTRNIEKLKLQL 733
P+ LLTK +A+KRS+ R ++L H+ EL IE++K +L
Sbjct: 720 PRNLLTKAKALKRSVAMLRHEALSNHITELETTIEQMKQEL 760
>gi|414885161|tpg|DAA61175.1| TPA: hypothetical protein ZEAMMB73_652631 [Zea mays]
Length = 964
Score = 454 bits (1169), Expect = e-124, Method: Compositional matrix adjust.
Identities = 252/591 (42%), Positives = 357/591 (60%), Gaps = 53/591 (8%)
Query: 175 LAELKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRL 234
LAE + ELRRLR + +++++K+G G+T+ IV IH +W+ EVVK+ E L
Sbjct: 352 LAERSIPEPELRRLRDTALRMKERIKVGPGGVTQDIVESIHRKWKVDEVVKMRFEGPPSL 411
Query: 235 NMKRTHDSLERKTGGLVVWRSGSKIILYRGADYK------YPYFLADESSTDGASSDDLP 288
NMKRTHD LE +TGG+V+WRSG ++LYRG +Y Y F+ +S G D
Sbjct: 412 NMKRTHDLLEDRTGGVVIWRSGRSVVLYRGMNYNFQCVQSYAKFIEIDS---GKGVSDAN 468
Query: 289 NQLVDDEGLDETKTHSSGADSAKPSGQSPTNKKVQQTLIHSVGSPDKLRYQLPGEAELVE 348
+ ++ +G + + + G S +G + L E+
Sbjct: 469 SAVLSHDGHNLQASRADGMKSLTSTGN----------------------FSL--ESSETF 504
Query: 349 EADRLLDGLGPRFTDWWGYDPQPVDADLLPATVPGYRRPFRLLPYGVQPKLTNDEMTTLR 408
+ D LD LGPR+ DW G P PVDADLLP V GY+ PFR+LPY ++ L + EMTTLR
Sbjct: 505 DIDNFLDQLGPRYKDWSGRGPIPVDADLLPGVVHGYKPPFRVLPYKIKSTLRDKEMTTLR 564
Query: 409 RLGRPLPCHFALGRNRNLQGLAAAIVKLWEKCEIAKIAVKRGAQNTNSEMMAQELKRLTG 468
RL R HFALGRNR QGLAAA+VKLWEK IAKIA+KRG NT ++ MA+E+K+LTG
Sbjct: 565 RLARQTAPHFALGRNREHQGLAAAMVKLWEKSAIAKIAIKRGIPNTCNDRMAEEIKKLTG 624
Query: 469 GTLLSRDREFIVFYRGKDFLPPAASSAIEERRKHEFSTSNDSKEEPELGNR-------HD 521
G LLSR++EFIVFYRG DF+ P + E+++ T D +E L D
Sbjct: 625 GVLLSRNKEFIVFYRGNDFIAPKVRQVLVEKQEQAI-TQQDEEELARLKASASIITIPKD 683
Query: 522 NSGDNTQDEFGCTNDQKS----TMHSEQKERRSAEVAIRR-----TNIRLSRVLEKK--A 570
G T + KS +++ +Q+E +++ + N++ +L K A
Sbjct: 684 IKGPLVAGTLAETTEAKSRWGKSVNDKQREEEMKHLSLLKHTSLLKNLKRKLILAKTKVA 743
Query: 571 EAEKLLAELEEE-RPEQYEVDKEGITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVENMH 629
+AEK LA+++E P + D E +T+EER++ R++GL+M+AFL++GRR VFDGTV+NMH
Sbjct: 744 KAEKALAKVQEFLTPAELPTDLETVTDEERFLFRRIGLKMRAFLMLGRREVFDGTVQNMH 803
Query: 630 LHWKHRELVKIISKQRKIEAALQEARTLEVESGGILVAVERVNKGYAIILYRGKNYERPA 689
LHWKHRELVKI+ + + A A +LE ES G+L+++++ KGY II YRGKNY RP
Sbjct: 804 LHWKHRELVKIVVRGKSFAQAKHIAISLEAESEGVLISLDKTTKGYVIIFYRGKNYRRPQ 863
Query: 690 CLRPKTLLTKREAMKRSLEAQRRQSLKLHVLELTRNIEKLKLQLVKDKEAN 740
++P+ LLT+R+A+ RS+E QRR++LK H+ L I KL+ QLV+ K A+
Sbjct: 864 IMKPRNLLTRRQALARSIELQRREALKHHISSLQGKISKLQSQLVQTKVAS 914
Score = 57.8 bits (138), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 71/146 (48%), Gaps = 14/146 (9%)
Query: 142 AIVRYNQLNKEVGRQKWLAKNS-----KMNEKEKEVPTLAEL-----KLSGKELRRLRTL 191
+++++ L K + R+ LAK K K +E T AEL ++ +E R +
Sbjct: 720 SLLKHTSLLKNLKRKLILAKTKVAKAEKALAKVQEFLTPAELPTDLETVTDEERFLFRRI 779
Query: 192 GIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRTHDSLERKTGGLV 251
G+ +R L +G+ + +G V +H W+H E+VKIV K SLE ++ G++
Sbjct: 780 GLKMRAFLMLGRREVFDGTVQNMHLHWKHRELVKIVVRGKSFAQAKHIAISLEAESEGVL 839
Query: 252 V----WRSGSKIILYRGADYKYPYFL 273
+ G II YRG +Y+ P +
Sbjct: 840 ISLDKTTKGYVIIFYRGKNYRRPQIM 865
Score = 48.5 bits (114), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 53/103 (51%), Gaps = 14/103 (13%)
Query: 588 EVDKEGITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVENMHLHWKHRELVKIISKQRKI 647
E+ + I E E LR LRMK + +G GV VE++H WK E+VK+ +
Sbjct: 351 ELAERSIPEPELRRLRDTALRMKERIKVGPGGVTQDIVESIHRKWKVDEVVKM-----RF 405
Query: 648 EA--ALQEART---LEVESGGILVAVERVNKGYAIILYRGKNY 685
E +L RT LE +GG+++ G +++LYRG NY
Sbjct: 406 EGPPSLNMKRTHDLLEDRTGGVVIW----RSGRSVVLYRGMNY 444
Score = 40.4 bits (93), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 53/103 (51%), Gaps = 3/103 (2%)
Query: 932 IQLSNRDRLLLRKQALRMKKRPVLAVGRSNIVTGVAKAIKAHFEKYPLAIVNVKGRAKGT 991
I+ + RD+ + + L + P A+GR+ G+A A+ +EK +A + +K T
Sbjct: 551 IKSTLRDKEMTTLRRLARQTAPHFALGRNREHQGLAAAMVKLWEKSAIAKIAIKRGIPNT 610
Query: 992 SVQEVVAKLEEATGAVLVSQEPSKVILYRGWGAEDESSPRGRQ 1034
+ ++++ TG VL+S+ ++ YRG D +P+ RQ
Sbjct: 611 CNDRMAEEIKKLTGGVLLSRNKEFIVFYRG---NDFIAPKVRQ 650
>gi|115478793|ref|NP_001062990.1| Os09g0363100 [Oryza sativa Japonica Group]
gi|48716728|dbj|BAD23409.1| putative CRS1 [Oryza sativa Japonica Group]
gi|50726191|dbj|BAD33710.1| putative CRS1 [Oryza sativa Japonica Group]
gi|113631223|dbj|BAF24904.1| Os09g0363100 [Oryza sativa Japonica Group]
gi|125591023|gb|EAZ31373.1| hypothetical protein OsJ_15500 [Oryza sativa Japonica Group]
Length = 947
Score = 453 bits (1166), Expect = e-124, Method: Compositional matrix adjust.
Identities = 260/605 (42%), Positives = 371/605 (61%), Gaps = 50/605 (8%)
Query: 175 LAELKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRL 234
LAE + ELRRLR + + +++++++G G+T+ IV IH++WR EVVK+ E L
Sbjct: 336 LAERTIPEHELRRLRDVALRMKERMRVGPGGVTQLIVESIHQKWRVEEVVKLRFEGPPSL 395
Query: 235 NMKRTHDSLERKTGGLVVWRSGSKIILYRGADYKYPYFLADESSTDGASSDDLPNQLVDD 294
NMKRTHD LE +TGG+V+WRSG ++LYRG +Y + +T+ + + V+
Sbjct: 396 NMKRTHDILEERTGGIVIWRSGRSVVLYRGMNYNLRCVQSYTQTTEVNFDKRVSSNSVEP 455
Query: 295 EGLDETKTHSSGADSAKPSGQSPTNKKVQQTLIHSVGSPDKLRYQLPGEAELVEEADRLL 354
+ E K SGAD S + V S +K P E + D L
Sbjct: 456 IHV-EHKFQKSGADGLNRSA-------------YIVNSSEK-----PTE---TFDIDSFL 493
Query: 355 DGLGPRFTDWWGYDPQPVDADLLPATVPGYRRPFRLLPYGVQPKLTNDEMTTLRRLGRPL 414
D LGPR+ DW G P PVDADLLP VPGY+ PFRLLPY V+ L N EMT LRRL R
Sbjct: 494 DQLGPRYKDWSGRGPIPVDADLLPGVVPGYKTPFRLLPYMVKSTLRNKEMTALRRLARQT 553
Query: 415 PCHFALGRNRNLQGLAAAIVKLWEKCEIAKIAVKRGAQNTNSEMMAQELKRLTGGTLLSR 474
HFALGRNR QGLA AIVKLWEK IAKIA+KRG NT ++ MA+E+++LTGG LLSR
Sbjct: 554 APHFALGRNREHQGLATAIVKLWEKSSIAKIAIKRGVPNTCNDRMAEEIRKLTGGVLLSR 613
Query: 475 DREFIVFYRGKDFLPPAASSAIEERRKHEFSTSNDSKEEPELGNRHDNSGDNTQDE---- 530
++E+IVFYRG DF+ P + E+++ + ++E EL ++ + + +
Sbjct: 614 NKEYIVFYRGNDFITPKVRQVLVEKQEQAITW----QDEEELARLKASASISVKPKVFKN 669
Query: 531 ------FGCTNDQKS----TMHSE-QKERRSAEVAIRRT----NIRLSRVLEKK--AEAE 573
T + KS ++++E +K+ ++ + + T N++ +L K +AE
Sbjct: 670 PPVAGTLAETREAKSRWGDSINAELRKKEKNHMILTKHTSLLRNLKRKLILAKTKVIKAE 729
Query: 574 KLLAELEEE-RPEQYEVDKEGITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVENMHLHW 632
K LA+++E P + D E +T+EER++LR++GL+MKAFL++GRR VFDGTV+NMHLHW
Sbjct: 730 KALAKVQEFLSPAELPTDLETVTDEERFLLRRIGLKMKAFLMLGRREVFDGTVQNMHLHW 789
Query: 633 KHRELVKIISKQRKIEAALQEARTLEVESGGILVAVERVNKGYAIILYRGKNYERPACLR 692
KHRELVK++ K + A +LE ESGG+L++V++ KGYAIILYRGKNY+ P L+
Sbjct: 790 KHRELVKVLVKGKSFPQVKHIAISLEAESGGVLISVDKTTKGYAIILYRGKNYKTPQILK 849
Query: 693 PKTLLTKREAMKRSLEAQRRQSLKLHVLELTRNIEKLKLQLVKDKEANSLETIDESILPL 752
P+ LL++R+A+ RS+E QRR+ L H+ L I KLK QLV+ + A E D +L
Sbjct: 850 PRNLLSRRKALARSIELQRREGLNHHISNLRDKIWKLKSQLVRMQVAG--EKPDAELLQT 907
Query: 753 VKEEI 757
V+ ++
Sbjct: 908 VEADL 912
Score = 47.0 bits (110), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 50/92 (54%), Gaps = 7/92 (7%)
Query: 934 LSNRDRLLLRKQALRMKKRPVLAVGRSNIVTGVAKAIKAHFEKYPLAIVNVKGRAKGTSV 993
+++ +R LLR+ L+MK L +GR + G + + H++ L V VKG++ V
Sbjct: 751 VTDEERFLLRRIGLKMKA--FLMLGRREVFDGTVQNMHLHWKHRELVKVLVKGKS-FPQV 807
Query: 994 QEVVAKLEEATGAVLVSQEPS----KVILYRG 1021
+ + LE +G VL+S + + +ILYRG
Sbjct: 808 KHIAISLEAESGGVLISVDKTTKGYAIILYRG 839
Score = 42.0 bits (97), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 51/101 (50%), Gaps = 5/101 (4%)
Query: 934 LSNRDRLLLRKQALRMKKRPVLAVGRSNIVTGVAKAIKAHFEKYPLAIVNVKGRAKGTSV 993
L N++ LR+ L + P A+GR+ G+A AI +EK +A + +K T
Sbjct: 538 LRNKEMTALRR--LARQTAPHFALGRNREHQGLATAIVKLWEKSSIAKIAIKRGVPNTCN 595
Query: 994 QEVVAKLEEATGAVLVSQEPSKVILYRGWGAEDESSPRGRQ 1034
+ ++ + TG VL+S+ ++ YRG D +P+ RQ
Sbjct: 596 DRMAEEIRKLTGGVLLSRNKEYIVFYRG---NDFITPKVRQ 633
>gi|242044486|ref|XP_002460114.1| hypothetical protein SORBIDRAFT_02g022940 [Sorghum bicolor]
gi|241923491|gb|EER96635.1| hypothetical protein SORBIDRAFT_02g022940 [Sorghum bicolor]
Length = 962
Score = 449 bits (1155), Expect = e-123, Method: Compositional matrix adjust.
Identities = 251/591 (42%), Positives = 359/591 (60%), Gaps = 53/591 (8%)
Query: 175 LAELKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRL 234
LAE + ELRRLR + +++++K+G G+T+ IV IH +W+ EVVK+ E L
Sbjct: 348 LAERTIPEPELRRLRDTALRMKERIKVGPGGVTQDIVESIHRKWKVDEVVKMRFEGPPSL 407
Query: 235 NMKRTHDSLERKTGGLVVWRSGSKIILYRGADYKYPYF--LADESSTD-GASSDDLPNQL 291
NMKRTHD LE +TGG+V+WRSG ++LYRG +Y A TD G DD + +
Sbjct: 408 NMKRTHDLLEDRTGGVVIWRSGRSVVLYRGMNYNLQCVQSYAKSIETDSGKEVDDASSAV 467
Query: 292 VDDEGLDETKTHSSGADSAKPSGQSPTNKKVQQTLIHSVGSPDKLRYQLPGEAELVEEAD 351
G + + +GA K++ T S+ S + + D
Sbjct: 468 SSHGGHNLQDSREAGA------------KRLTSTENFSLESSETF------------DID 503
Query: 352 RLLDGLGPRFTDWWGYDPQPVDADLLPATVPGYRRPFRLLPYGVQPKLTNDEMTTLRRLG 411
LD LGPR+ DW G P PVDADLLP V GY+ PFR+LPY ++ L + EMTTLRRL
Sbjct: 504 NFLDQLGPRYRDWSGRGPVPVDADLLPGVVHGYKPPFRVLPYKIKSTLRDKEMTTLRRLS 563
Query: 412 RPLPCHFALGRNRNLQGLAAAIVKLWEKCEIAKIAVKRGAQNTNSEMMAQELKRLTGGTL 471
R HFALGRNR QGLAAA+VKLWEK IAKIA+KRG NT ++ MA+E+K+LTGG L
Sbjct: 564 RQTAPHFALGRNREHQGLAAAMVKLWEKSAIAKIAIKRGVPNTCNDRMAEEIKKLTGGVL 623
Query: 472 LSRDREFIVFYRGKDFLPPAASSAIEERRKHEFSTSNDSKEEPELGNRHDNS-------- 523
LSR++E+IVFYRG DF+ P + E+++ + ++E EL ++
Sbjct: 624 LSRNKEYIVFYRGNDFIAPKVRQVLVEKQEQAIT----QQDEEELARLKASASIITVPKG 679
Query: 524 --GDNTQDEFGCTNDQKS----TMHSEQKERRSAEVAIRR-----TNIRLSRVLEKK--A 570
G T + KS +++ +Q+E +++ + N++ +L K A
Sbjct: 680 IKGPLVAGTLTETTEAKSRWGMSLNDKQREEEMKRLSLLKHTSLLKNLKRKLILAKTKVA 739
Query: 571 EAEKLLAELEEE-RPEQYEVDKEGITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVENMH 629
+AE+ LA+++E P + D E +T+EER++ R++GL+M+AFL++GRR VFDGTV+NMH
Sbjct: 740 KAERALAKVQEFLSPAELPTDLETVTDEERFLFRRIGLKMRAFLMLGRREVFDGTVQNMH 799
Query: 630 LHWKHRELVKIISKQRKIEAALQEARTLEVESGGILVAVERVNKGYAIILYRGKNYERPA 689
LHWKHRELVKII + + A +LE ES G+L+++++ +KGYAII YRGKNY RP
Sbjct: 800 LHWKHRELVKIIVRGKSFAQVKHIAISLEAESEGVLISLDKTSKGYAIIFYRGKNYRRPQ 859
Query: 690 CLRPKTLLTKREAMKRSLEAQRRQSLKLHVLELTRNIEKLKLQLVKDKEAN 740
++P+ LLT+R+A+ RS+E QRR++LK H+ L I KL+ QLV+ K A+
Sbjct: 860 IMKPRNLLTRRQALARSIELQRREALKHHISSLQGKIWKLQSQLVQTKVAS 910
Score = 48.5 bits (114), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 53/103 (51%), Gaps = 14/103 (13%)
Query: 588 EVDKEGITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVENMHLHWKHRELVKIISKQRKI 647
E+ + I E E LR LRMK + +G GV VE++H WK E+VK+ +
Sbjct: 347 ELAERTIPEPELRRLRDTALRMKERIKVGPGGVTQDIVESIHRKWKVDEVVKM-----RF 401
Query: 648 EA--ALQEART---LEVESGGILVAVERVNKGYAIILYRGKNY 685
E +L RT LE +GG+++ G +++LYRG NY
Sbjct: 402 EGPPSLNMKRTHDLLEDRTGGVVIW----RSGRSVVLYRGMNY 440
Score = 41.6 bits (96), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 53/103 (51%), Gaps = 3/103 (2%)
Query: 932 IQLSNRDRLLLRKQALRMKKRPVLAVGRSNIVTGVAKAIKAHFEKYPLAIVNVKGRAKGT 991
I+ + RD+ + + L + P A+GR+ G+A A+ +EK +A + +K T
Sbjct: 547 IKSTLRDKEMTTLRRLSRQTAPHFALGRNREHQGLAAAMVKLWEKSAIAKIAIKRGVPNT 606
Query: 992 SVQEVVAKLEEATGAVLVSQEPSKVILYRGWGAEDESSPRGRQ 1034
+ ++++ TG VL+S+ ++ YRG D +P+ RQ
Sbjct: 607 CNDRMAEEIKKLTGGVLLSRNKEYIVFYRG---NDFIAPKVRQ 646
>gi|30686898|ref|NP_188947.2| CRM family member 3A [Arabidopsis thaliana]
gi|332643191|gb|AEE76712.1| CRM family member 3A [Arabidopsis thaliana]
Length = 881
Score = 449 bits (1155), Expect = e-123, Method: Compositional matrix adjust.
Identities = 287/704 (40%), Positives = 411/704 (58%), Gaps = 53/704 (7%)
Query: 53 LTQSETRVQNDTTSAIQRIADKLRSLGIVEQTTSKDDTLNPEPETRATDNAGE-IFIPLP 111
++ + R ++ S +++I +KL+ G +E+ +K+ E E R + E IF
Sbjct: 104 VSGDDNRSRDGDGSTMEKIVEKLKKYGYMEEVQNKE----IEQERRIEKGSVEDIFYVEE 159
Query: 112 HRIPKYRVGHTIDDSWSTPENPVPVPG-TGAAIVRYNQLNKEVGRQKWLAKNSKMNEKEK 170
++P R G T ++S EN + G G + + K+ +W AK KE
Sbjct: 160 GKLPNTRGGFT-EESLLGGENVIGSNGDVGFPWEKMSAKEKKELEAEWTAK------KEN 212
Query: 171 EVPTLAELKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCED 230
+LAE+ L ELRRLR L K++I G+T+ V+ I E+W+ AE+V++ E
Sbjct: 213 RY-SLAEMTLPESELRRLRNLTFRTASKMRIRGGGVTQVAVDAIKEKWKSAEIVRLKIEG 271
Query: 231 LCRLNMKRTHDSLERKTGGLVVWRSGSKIILYRGADYKYPYFLADESSTDGASSDDLPNQ 290
LNM++ H+ LE+KTGGLV+WRSG+ I LYRG Y+ P + ++ P +
Sbjct: 272 ASALNMRKMHEILEKKTGGLVIWRSGTSISLYRGVSYELP-----SGKWNKQRREETPPE 326
Query: 291 LVDDEGLDETKTHSSGADSAKPSGQSPTNKKVQQTLIHSVGSPDKLRYQLPGEAELVEEA 350
V E DET T +D +KV + + + + Q E +E
Sbjct: 327 AVI-ENHDETTTMVDKSD-----------EKVHLPQLEQETTSVEKKDQTSPVVEYEDEL 374
Query: 351 DRLLDGLGPRFTDWWGYDPQPVDADLLPATVPGYRRPFRLLPYGVQPKLTNDEMTTLRRL 410
D LLD LGPRF DW G +P PVDADLLP +P Y PFR+LPYGV+ L E T LRRL
Sbjct: 375 DELLDDLGPRFMDWPGDNPLPVDADLLPGAIPDYEPPFRVLPYGVRSSLGPKEATALRRL 434
Query: 411 GRPLPCHFALGRNRNLQGLAAAIVKLWEKCEIAKIAVKRGAQNTNSEMMAQELKRLTGGT 470
R +P HFALGR+R LQGLA A+V+LWEK +AKIA+KRG Q+T SE MA++LK+LTGG
Sbjct: 435 ARSIPPHFALGRSRQLQGLATAMVRLWEKSMLAKIAIKRGVQSTTSERMAEDLKKLTGGI 494
Query: 471 LLSRDREFIVFYRGKDFLPPAASSAIEERRKHEFSTSNDSKEEPEL-------------G 517
+LSR+++F+VFYRGK+FL + A+ E+ + T D +E+ L
Sbjct: 495 MLSRNKDFLVFYRGKNFLSREVADALVEQERF-VRTLQDEEEQARLRGSSALIVPSTEPA 553
Query: 518 NRHDNSGD--NTQDEFG-----CTNDQKSTMHSEQKERRSAEVAIRRTNIRLSRVLEKKA 570
N+ ++G T D G +D S ++ E E +R+ +L+ K
Sbjct: 554 NKLVSAGTLGETLDATGKWGKNLDDDDHSDEVKQEVEILRHENLVRKLERKLAFAERKLL 613
Query: 571 EAEKLLAELEE-ERPEQYEVDKEGITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVENMH 629
+AE+ LA++E +P + D E IT+EER+M RK+GL+MKAFLL+GRRGVFDGTVENMH
Sbjct: 614 KAERGLAKVEVCLKPAEQREDPESITDEERFMFRKLGLKMKAFLLLGRRGVFDGTVENMH 673
Query: 630 LHWKHRELVKIISKQRKIEAALQEARTLEVESGGILVAVERVNKGYAIILYRGKNYERPA 689
LHWK+RELVKII K + + + A LE ESGGILV++++V KGYAII+YRG++Y+RP
Sbjct: 674 LHWKYRELVKIIVKAKTFDGVKKVALALEAESGGILVSIDKVTKGYAIIVYRGQDYKRPT 733
Query: 690 CLRPKTLLTKREAMKRSLEAQRRQSLKLHVLELTRNIEKLKLQL 733
LRPK LLTKR+A+ RS+E QRR+ L H+ + ++L+ ++
Sbjct: 734 MLRPKNLLTKRKALARSIELQRREGLLKHISTMQAKAKQLRAEI 777
Score = 42.7 bits (99), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 40/69 (57%)
Query: 953 PVLAVGRSNIVTGVAKAIKAHFEKYPLAIVNVKGRAKGTSVQEVVAKLEEATGAVLVSQE 1012
P A+GRS + G+A A+ +EK LA + +K + T+ + + L++ TG +++S+
Sbjct: 440 PHFALGRSRQLQGLATAMVRLWEKSMLAKIAIKRGVQSTTSERMAEDLKKLTGGIMLSRN 499
Query: 1013 PSKVILYRG 1021
++ YRG
Sbjct: 500 KDFLVFYRG 508
>gi|2244807|emb|CAB10230.1| hypothetical protein [Arabidopsis thaliana]
gi|7268157|emb|CAB78493.1| hypothetical protein [Arabidopsis thaliana]
Length = 918
Score = 449 bits (1155), Expect = e-123, Method: Compositional matrix adjust.
Identities = 296/760 (38%), Positives = 424/760 (55%), Gaps = 126/760 (16%)
Query: 68 IQRIADKLRSLGIVEQTTSKDDTLNPEPETRATDNAGEIFIPLPHRIPKYRVGHTIDDSW 127
+++I +KL+ G V++ +D + E E R ++ E + R R G +
Sbjct: 111 MEKIVEKLKKYGFVDEDQFQDKEV--EQERRIEKSSVEERFYVEER----RGGFS----- 159
Query: 128 STPENPVPVPGTGAAIVRY------NQLNKEVGRQKWLAKNSKMNEKEKEVPTLAELKLS 181
E+P V G G V++ + KE+ +W AK KE +LAE+ LS
Sbjct: 160 --EESPFGVYG-GNDEVKFPWEKVSSMEKKELVNGEWTAK------KESRY-SLAEMTLS 209
Query: 182 GKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRTHD 241
EL RLR + + K+++ AG+T+ +V+ I E+W+ +E+V++ E LNM+R H+
Sbjct: 210 EFELNRLRNVMFRTKSKMRVTGAGVTQAVVDAIQEKWKGSEIVRLKIEGSSALNMRRMHE 269
Query: 242 SLERKTGGLVVWRSGSKIILYRGADYKYPYFLADESSTDGASSDDLPNQLVDDEGLDETK 301
LERKTGGLV+WRSG+ I LY +YK S+ DG S ++ Q+ +
Sbjct: 270 ILERKTGGLVIWRSGTSIALY---NYK------GGSNRDG--SGNMNKQVYRRAERLPSS 318
Query: 302 THSSGADSAKPSGQSPTNKKVQQTLIHSVGSPDKLRYQLPGEAELVEEADRLLDGLGPRF 361
+S D + P +K + T+ VG+ D+ P E E +E + LL+GLGPR+
Sbjct: 319 LPTSTVDQSVQLVNLPQLEK-EPTV---VGNKDRTS---PQEVEYEDEINELLEGLGPRY 371
Query: 362 TDWWGYDPQPVDADLLPATVPGYRRPFRLLPYGVQPKLTNDEMTTLRRLGRPLPCHFALG 421
TDW G P PVDADLLP VPGY PFR LPYGV+ L E T+LRR+ LP HFALG
Sbjct: 372 TDWQGGYPLPVDADLLPGIVPGYEPPFRALPYGVRSTLGTKEATSLRRIATVLPPHFALG 431
Query: 422 RNRNLQGLAAAIVKLWEKCEIAKIAVKRGAQNTNSEMMAQELK----------------- 464
R+R LQGLA A+VKLW+K IAK+A+KRG Q T SE MA+++K
Sbjct: 432 RSRQLQGLATAMVKLWQKSLIAKVALKRGVQLTTSERMAEDIKVIRFHSRVTFNCFYINV 491
Query: 465 --------RLTGGTLLSRDREFIVFYRGKDFLPPAASSAIEERRKHEFSTSNDSKEEPEL 516
RLTGG LLSR+++F+VFYRGK FL A+ E ++ T D +E+ L
Sbjct: 492 DIIRINDKRLTGGMLLSRNKDFLVFYRGKSFLSLEVGEALME-KEMLVRTLQDEEEQARL 550
Query: 517 ---------------------------------------GNRHDNSGDNTQDEFGCT--- 534
N++ S + T
Sbjct: 551 RASSALVVPSIKANQQLARTLQDKEEQARPSALVLPSTKANQNLVSAGTLGETLDATGKW 610
Query: 535 ------NDQKSTMHSEQKERRSAEVAIRRTNIRLSRVLEKKAEAEKLLAELEEE-RPEQY 587
+D M E ++ RSA++ +R+ +L+ +K +AE+ LA++EE +P +
Sbjct: 611 GKNLDNDDHVEEMKQEVEKVRSAKL-VRKLERKLAFAEKKLLKAERALAKVEESLKPAEQ 669
Query: 588 EVDKEGITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVENMHLHWKHRELVKIISKQRKI 647
D EGITEEER+M +K+GL+MKAFLL+GRRGVFDGTVENMHLHWK+REL+KI+ K + +
Sbjct: 670 RTDLEGITEEERFMFQKLGLKMKAFLLLGRRGVFDGTVENMHLHWKYRELIKILVKAKTL 729
Query: 648 EAALQEARTLEVESGGILVAVERVNKGYAIILYRGKNYERPACLRPKTLLTKREAMKRSL 707
E A + A LE ESGGILV+V++++KGYA+I+YRGK+Y+RP LRPK LLTKR+A+ RSL
Sbjct: 730 EGAQKVAMALEAESGGILVSVDKISKGYAVIVYRGKDYKRPTTLRPKNLLTKRKALARSL 789
Query: 708 EAQRRQSLKLHVLELTRNIEKLK-----LQLVKDKEANSL 742
E Q+R++L H+ + E+L+ ++LVKDK +L
Sbjct: 790 ELQKREALIKHIEAIQTRSEQLRAEIEQVELVKDKGDETL 829
>gi|9294196|dbj|BAB02098.1| unnamed protein product [Arabidopsis thaliana]
Length = 850
Score = 448 bits (1153), Expect = e-123, Method: Compositional matrix adjust.
Identities = 287/704 (40%), Positives = 411/704 (58%), Gaps = 53/704 (7%)
Query: 53 LTQSETRVQNDTTSAIQRIADKLRSLGIVEQTTSKDDTLNPEPETRATDNAGE-IFIPLP 111
++ + R ++ S +++I +KL+ G +E+ +K+ E E R + E IF
Sbjct: 73 VSGDDNRSRDGDGSTMEKIVEKLKKYGYMEEVQNKE----IEQERRIEKGSVEDIFYVEE 128
Query: 112 HRIPKYRVGHTIDDSWSTPENPVPVPG-TGAAIVRYNQLNKEVGRQKWLAKNSKMNEKEK 170
++P R G T ++S EN + G G + + K+ +W AK KE
Sbjct: 129 GKLPNTRGGFT-EESLLGGENVIGSNGDVGFPWEKMSAKEKKELEAEWTAK------KEN 181
Query: 171 EVPTLAELKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCED 230
+LAE+ L ELRRLR L K++I G+T+ V+ I E+W+ AE+V++ E
Sbjct: 182 RY-SLAEMTLPESELRRLRNLTFRTASKMRIRGGGVTQVAVDAIKEKWKSAEIVRLKIEG 240
Query: 231 LCRLNMKRTHDSLERKTGGLVVWRSGSKIILYRGADYKYPYFLADESSTDGASSDDLPNQ 290
LNM++ H+ LE+KTGGLV+WRSG+ I LYRG Y+ P + ++ P +
Sbjct: 241 ASALNMRKMHEILEKKTGGLVIWRSGTSISLYRGVSYELP-----SGKWNKQRREETPPE 295
Query: 291 LVDDEGLDETKTHSSGADSAKPSGQSPTNKKVQQTLIHSVGSPDKLRYQLPGEAELVEEA 350
V E DET T +D +KV + + + + Q E +E
Sbjct: 296 AVI-ENHDETTTMVDKSD-----------EKVHLPQLEQETTSVEKKDQTSPVVEYEDEL 343
Query: 351 DRLLDGLGPRFTDWWGYDPQPVDADLLPATVPGYRRPFRLLPYGVQPKLTNDEMTTLRRL 410
D LLD LGPRF DW G +P PVDADLLP +P Y PFR+LPYGV+ L E T LRRL
Sbjct: 344 DELLDDLGPRFMDWPGDNPLPVDADLLPGAIPDYEPPFRVLPYGVRSSLGPKEATALRRL 403
Query: 411 GRPLPCHFALGRNRNLQGLAAAIVKLWEKCEIAKIAVKRGAQNTNSEMMAQELKRLTGGT 470
R +P HFALGR+R LQGLA A+V+LWEK +AKIA+KRG Q+T SE MA++LK+LTGG
Sbjct: 404 ARSIPPHFALGRSRQLQGLATAMVRLWEKSMLAKIAIKRGVQSTTSERMAEDLKKLTGGI 463
Query: 471 LLSRDREFIVFYRGKDFLPPAASSAIEERRKHEFSTSNDSKEEPEL-------------G 517
+LSR+++F+VFYRGK+FL + A+ E+ + T D +E+ L
Sbjct: 464 MLSRNKDFLVFYRGKNFLSREVADALVEQERF-VRTLQDEEEQARLRGSSALIVPSTEPA 522
Query: 518 NRHDNSGD--NTQDEFG-----CTNDQKSTMHSEQKERRSAEVAIRRTNIRLSRVLEKKA 570
N+ ++G T D G +D S ++ E E +R+ +L+ K
Sbjct: 523 NKLVSAGTLGETLDATGKWGKNLDDDDHSDEVKQEVEILRHENLVRKLERKLAFAERKLL 582
Query: 571 EAEKLLAELEE-ERPEQYEVDKEGITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVENMH 629
+AE+ LA++E +P + D E IT+EER+M RK+GL+MKAFLL+GRRGVFDGTVENMH
Sbjct: 583 KAERGLAKVEVCLKPAEQREDPESITDEERFMFRKLGLKMKAFLLLGRRGVFDGTVENMH 642
Query: 630 LHWKHRELVKIISKQRKIEAALQEARTLEVESGGILVAVERVNKGYAIILYRGKNYERPA 689
LHWK+RELVKII K + + + A LE ESGGILV++++V KGYAII+YRG++Y+RP
Sbjct: 643 LHWKYRELVKIIVKAKTFDGVKKVALALEAESGGILVSIDKVTKGYAIIVYRGQDYKRPT 702
Query: 690 CLRPKTLLTKREAMKRSLEAQRRQSLKLHVLELTRNIEKLKLQL 733
LRPK LLTKR+A+ RS+E QRR+ L H+ + ++L+ ++
Sbjct: 703 MLRPKNLLTKRKALARSIELQRREGLLKHISTMQAKAKQLRAEI 746
Score = 42.7 bits (99), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 40/69 (57%)
Query: 953 PVLAVGRSNIVTGVAKAIKAHFEKYPLAIVNVKGRAKGTSVQEVVAKLEEATGAVLVSQE 1012
P A+GRS + G+A A+ +EK LA + +K + T+ + + L++ TG +++S+
Sbjct: 409 PHFALGRSRQLQGLATAMVRLWEKSMLAKIAIKRGVQSTTSERMAEDLKKLTGGIMLSRN 468
Query: 1013 PSKVILYRG 1021
++ YRG
Sbjct: 469 KDFLVFYRG 477
>gi|356564786|ref|XP_003550629.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Glycine max]
Length = 794
Score = 444 bits (1141), Expect = e-121, Method: Compositional matrix adjust.
Identities = 258/592 (43%), Positives = 352/592 (59%), Gaps = 43/592 (7%)
Query: 175 LAELKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRL 234
LAE + ELRRLR + + + ++ +G GIT+ +V +H++WR AEVVK
Sbjct: 196 LAERTIPEHELRRLRKIALRMMERFDVGVKGITQELVASVHQKWRDAEVVKFKFGIPLSA 255
Query: 235 NMKRTHDSLERKTGGLVVWRSGSKIILYRGADYKYPYFLADESSTDGASSDDLPNQLVDD 294
+MK+ H LE K GG+V+WRSGS I+LYRG YK P + L +
Sbjct: 256 HMKKAHQILESKIGGIVIWRSGSSIVLYRGMAYKLPCI-----------ENYKKVNLAKE 304
Query: 295 EGLDETKTHSSGADSAKPSGQSPTNKKV--QQTLIHSVGSPDKLRYQLPGEAELVEEAD- 351
+D + +G+D GQ+ N+ V +++I S + L+ E EL+E D
Sbjct: 305 NAVDHSLHVGNGSD-----GQASVNETVGTAESVIQE--SAEYLKDM--SEEELMEMCDL 355
Query: 352 -RLLDGLGPRFTDWWGYDPQPVDADLLPATVPGYRRPFRLLPYGVQPKLTNDEMTTLRRL 410
LLD LGPRF DW G P PVDADLLPA VPGY+ PFRLLPY ++P LTN EMT RRL
Sbjct: 356 NHLLDELGPRFKDWTGRQPLPVDADLLPAVVPGYKTPFRLLPYRIRPCLTNKEMTNFRRL 415
Query: 411 GRPLPCHFALGRNRNLQGLAAAIVKLWEKCEIAKIAVKRGAQNTNSEMMAQELKRLTGGT 470
R HFALGRNR LQGLA A+VKLWE IAKIA+KRG NT ++ MA+EL++LTGGT
Sbjct: 416 ARTTAPHFALGRNRELQGLARAMVKLWETSAIAKIAIKRGVPNTCNDRMAEELRKLTGGT 475
Query: 471 LLSRDREFIVFYRGKDFLPPAASSAIEERRKHEFSTSNDSKEEPELGNRHDNS------- 523
LLSR++E+IVFYRG DFLPP ++ + ER+K ++ + ++ + S
Sbjct: 476 LLSRNKEYIVFYRGNDFLPPVVTNTLNERQKLTLLQQDEEDKARQIASSITVSNSKAAQV 535
Query: 524 ----GDNTQDEFGCTN--DQKSTMHSEQKERRSA----EVAIRRTNIRLSRVLEKKAEAE 573
G T+ TN Q S E R SA ++ +L+ K +AE
Sbjct: 536 PLIAGTLTETRAATTNWGHQPSKQEIENMIRDSAMNKLSALVKHHEKKLALAKSKFRKAE 595
Query: 574 KLLAELEEE-RPEQYEVDKEGITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVENMHLHW 632
K LA+++ + P D E +T EER++ RK+GL MK +LL+GRR V+ GT+ENMHLHW
Sbjct: 596 KALAKVQRDLDPADIPSDLETLTNEERFLFRKIGLSMKPYLLLGRRDVYAGTIENMHLHW 655
Query: 633 KHRELVKIISKQRKIEAALQEARTLEVESGGILVAVERVNKG-YAIILYRGKNYERPACL 691
K+RELVK+I K R + +LE ESGG+LV+V++ +G + II+YRGKNY P +
Sbjct: 656 KYRELVKLIVKGRNSAQVKHISISLEAESGGVLVSVDKDTRGHHTIIVYRGKNYFSPRVV 715
Query: 692 RPKTLLTKREAMKRSLEAQRRQSLKLHVLELTRNIEKLKLQLVKDKEANSLE 743
RPK LLT+R+A+ RS+E QRR++LK H+ +L I LK +L K +E
Sbjct: 716 RPKNLLTRRQALARSVELQRREALKHHISDLEERIGLLKSELEDMKNGKEIE 767
Score = 50.8 bits (120), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 60/211 (28%), Positives = 95/211 (45%), Gaps = 36/211 (17%)
Query: 832 SVSKESQLNMIADFFAEGVASGTSSCPDNSMQEVMEYNTIVDA--EQCSSDNEPRESSIE 889
S SK +Q+ +IA E A+ T+ S QE+ N I D+ + S+ + E +
Sbjct: 528 SNSKAAQVPLIAGTLTETRAATTNWGHQPSKQEI--ENMIRDSAMNKLSALVKHHEKKLA 585
Query: 890 SAKSRSSENEP----IEQSFELAKGRSGLSTPIGTGNVWNENNSRAIQLSNRDRLLLRKQ 945
AKS+ + E +++ + A S L T L+N +R L RK
Sbjct: 586 LAKSKFRKAEKALAKVQRDLDPADIPSDLET-----------------LTNEERFLFRKI 628
Query: 946 ALRMKKRPVLAVGRSNIVTGVAKAIKAHFEKYPLAIVNVKGRAKGTSVQEVVAKLEEATG 1005
L MK P L +GR ++ G + + H++ L + VKGR V+ + LE +G
Sbjct: 629 GLSMK--PYLLLGRRDVYAGTIENMHLHWKYRELVKLIVKGR-NSAQVKHISISLEAESG 685
Query: 1006 AVLVSQEPS-----KVILYRGWGAEDESSPR 1031
VLVS + +I+YRG ++ SPR
Sbjct: 686 GVLVSVDKDTRGHHTIIVYRG---KNYFSPR 713
>gi|449440945|ref|XP_004138244.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Cucumis sativus]
gi|449477054|ref|XP_004154915.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Cucumis sativus]
Length = 560
Score = 438 bits (1126), Expect = e-120, Method: Compositional matrix adjust.
Identities = 242/529 (45%), Positives = 326/529 (61%), Gaps = 70/529 (13%)
Query: 236 MKRTHDSLERKTGGLVVWRSGSKIILYRGADYKYP------------YFLADESSTDGAS 283
MK H+ +ER+TGGLV+WRSGS +++YRG++Y+ P F+ D SS ++
Sbjct: 1 MKTAHEIVERRTGGLVLWRSGSVMVVYRGSNYEGPSKIKPLTRDGDGVFIPDVSSATTST 60
Query: 284 SDDLPNQLVDDEGLDETKTHSSGADSAKPSGQSPTNKKVQQTLIHSVGSPDKLRYQLPGE 343
SD++ S + P G +N+ G
Sbjct: 61 SDNV--------------AASVPEKTMMPIGPPMSNE---------------------GL 85
Query: 344 AELVEEADRLLDGLGPRFTDWWGYDPQPVDADLLPATVPGYRRPFRLLPYGVQPKLTNDE 403
+E E ++LLDGLGPRF +WWG PVDAD LP ++PGY+ PFRLLP G++ +LTN E
Sbjct: 86 SEEEAEYNQLLDGLGPRFVEWWGTGVLPVDADQLPPSIPGYKTPFRLLPTGMRSRLTNAE 145
Query: 404 MTTLRRLGRPLPCHFALGRNRNLQGLAAAIVKLWEKCEIAKIAVKRGAQNTNSEMMAQEL 463
MT +R+L + LPCHFALGRNRN QGLA AI+KLWEK + KIAVKRG QNTN+++MA+E+
Sbjct: 146 MTQMRKLAKSLPCHFALGRNRNHQGLAVAILKLWEKSLVVKIAVKRGIQNTNNKLMAEEI 205
Query: 464 KRLTGGTLLSRDREFIVFYRGKDFLPPAASSAIEERRKH-------EFSTSNDSKEEPEL 516
LTGG LL R++ FIV YRGKDFLPP+ + A+ ER++ E N E L
Sbjct: 206 GNLTGGVLLLRNKYFIVIYRGKDFLPPSVAVALTERQELTKQIQDVEEKVRNKVVEATSL 265
Query: 517 G-NRHDNSGD-----NTQDEFG--CTNDQKSTMHSEQKERRSAEVAIRRTNIRLSRVLEK 568
N +G Q +G T +++ M E ++A + +RR +L K
Sbjct: 266 SINGQAPAGTLAEFYEAQSRWGREITAEEREKMVEESSRAKTARL-VRRIEHKLGVAQAK 324
Query: 569 KAEAEKLLAELEE----ERPEQYEVDKEGITEEERYMLRKVGLRMKAFLLMGRRGVFDGT 624
K AEKLL+++E P+ D+E IT+EER M R+VGLRM A+L MG RGVFDG
Sbjct: 325 KLRAEKLLSKIEASMILSSPDD---DQETITDEERVMFRRVGLRMTAYLPMGIRGVFDGV 381
Query: 625 VENMHLHWKHRELVKIISKQRKIEAALQEARTLEVESGGILVAVERVNKGYAIILYRGKN 684
VENMHLHWKHRELVK+ISKQ+ + + AR LE ESGGILV+++RV KGYA++ YRGKN
Sbjct: 382 VENMHLHWKHRELVKLISKQKTLAFVEETARLLEYESGGILVSIDRVPKGYALVYYRGKN 441
Query: 685 YERPACLRPKTLLTKREAMKRSLEAQRRQSLKLHVLELTRNIEKLKLQL 733
Y RP LRP+ LLTK +A+KRS+ QR ++L H+ EL +NIE++K ++
Sbjct: 442 YRRPIALRPRNLLTKAKALKRSVAMQRHEALSQHISELEQNIEQMKKEI 490
Score = 58.5 bits (140), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 79/330 (23%), Positives = 141/330 (42%), Gaps = 24/330 (7%)
Query: 172 VPTLAELKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKI-VCED 230
+PT +L+ E+ ++R L L +G+ +G+ I + W + VVKI V
Sbjct: 133 LPTGMRSRLTNAEMTQMRKLAKSLPCHFALGRNRNHQGLAVAILKLWEKSLVVKIAVKRG 192
Query: 231 LCRLNMKRTHDSLERKTGGLVVWRSGSKIILYRGADYKYPYFLADESSTDGASSDDLPNQ 290
+ N K + + TGG+++ R+ I++YRG D FL + +L Q
Sbjct: 193 IQNTNNKLMAEEIGNLTGGVLLLRNKYFIVIYRGKD-----FLPPSVAVALTERQELTKQ 247
Query: 291 LVDDEGLDETKTHSSGADSAKPSGQSPTNKKVQQTLIHSVGSPDKLRYQLPGE--AELVE 348
+ D E ++ + A S +GQ+P TL + + ++ E ++VE
Sbjct: 248 IQDVE--EKVRNKVVEATSLSINGQAPAG-----TLAEFYEAQSRWGREITAEEREKMVE 300
Query: 349 EADRLLDG-LGPRFTDWWGY-DPQPVDADLLPATVPGYRRPFRLLPYGVQPKLTNDEMTT 406
E+ R L R G + + A+ L + + P Q +T++E
Sbjct: 301 ESSRAKTARLVRRIEHKLGVAQAKKLRAEKLLSKIEASM--ILSSPDDDQETITDEERVM 358
Query: 407 LRRLGRPLPCHFALGRNRNLQGLAAAIVKLWEKCEIAKIAVKRGAQNTNSEMMAQELKRL 466
RR+G + + +G G+ + W+ E+ K+ K+ E A+ L+
Sbjct: 359 FRRVGLRMTAYLPMGIRGVFDGVVENMHLHWKHRELVKLISKQKTLAFVEE-TARLLEYE 417
Query: 467 TGGTLLSRDR----EFIVFYRGKDFLPPAA 492
+GG L+S DR +V+YRGK++ P A
Sbjct: 418 SGGILVSIDRVPKGYALVYYRGKNYRRPIA 447
Score = 53.5 bits (127), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 49/90 (54%), Gaps = 4/90 (4%)
Query: 188 LRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRTHDSLERKT 247
R +G+ + L +G G+ +G+V +H W+H E+VK++ + ++ T LE ++
Sbjct: 359 FRRVGLRMTAYLPMGIRGVFDGVVENMHLHWKHRELVKLISKQKTLAFVEETARLLEYES 418
Query: 248 GGLVV----WRSGSKIILYRGADYKYPYFL 273
GG++V G ++ YRG +Y+ P L
Sbjct: 419 GGILVSIDRVPKGYALVYYRGKNYRRPIAL 448
>gi|225452088|ref|XP_002280704.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Vitis vinifera]
Length = 1184
Score = 436 bits (1122), Expect = e-119, Method: Compositional matrix adjust.
Identities = 270/621 (43%), Positives = 359/621 (57%), Gaps = 61/621 (9%)
Query: 154 GRQKWLAKNSKM---NEKEKEVPTLAELKLSGKELRRLRTLGIGLRKKLKIGKAGITEGI 210
G+ WL K K+ K+++V T AEL L L RLR + +RK +K+ KAG+TE +
Sbjct: 174 GKMPWL-KTEKVVFRRTKKEKVVTAAELTLDPMLLERLRGEAVKMRKWVKVKKAGVTESV 232
Query: 211 VNGIHERWRHAEVVKIVCE-DLCRLNMKRTHDSLERKTGGLVVWRSGSKIILYRGADYKY 269
V+ IH W+ E+ + + LCR NM R + LE KT GLV+W +++YRG++Y+
Sbjct: 233 VDQIHMVWKSDELAMVKFDMPLCR-NMDRAREILEIKTRGLVIWSKKDTLVVYRGSNYQS 291
Query: 270 ---------PYFLADESSTDGASSDDLPNQLVDDEGLDETKTHSS--GADSAKPSGQ--- 315
P +A D ++S + DD + E K H S G + G+
Sbjct: 292 TSKHFQKMRPGLVA---GADASNSKLNQSNFEDDLTISEIKFHESTTGEKMGRKDGEEDS 348
Query: 316 SPTNKKVQQTLIHSVGSPDKLRYQLPGEAELVE-EADRLLDGLGPRFTDWWGYDPQPVDA 374
SPT +++ + P L E EADRLLDGLGPRF DWW P PVDA
Sbjct: 349 SPTGIFMEEMVDSQ-----------PVNGSLYEREADRLLDGLGPRFIDWWRPKPLPVDA 397
Query: 375 DLLPATVPGYRRPFRLLPYGVQPKLTNDEMTTLRRLGRPLPCHFALGRNRNLQGLAAAIV 434
DLLP +PG+R PFRL P + KLT+DE+T LR+L LP HF LGRNR LQGLAAAI+
Sbjct: 398 DLLPEVLPGFRPPFRLSPPQTRSKLTDDELTYLRKLAYALPTHFVLGRNRKLQGLAAAIL 457
Query: 435 KLWEKCEIAKIAVKRGAQNTNSEMMAQELKRLTGGTLLSRDREFIVFYRGKDFLPPAASS 494
KLWEK I KIA+K G NT +E MA ELK LTGG LL R++ FI+ YRGKDFLP ++
Sbjct: 458 KLWEKSLIVKIAIKWGIPNTKNEQMANELKCLTGGVLLLRNKFFIILYRGKDFLPCRVAN 517
Query: 495 AIEERRKHEFSTSNDSKEEPELG------------NRHDNSG-----DNTQDEFGCTNDQ 537
I E R+ EF +E+ L +G N + EF D
Sbjct: 518 LIVE-REMEFKGCQIREEDARLKAIETSFVTDKPLANTSTTGTLSEFQNIETEFRGLKDG 576
Query: 538 KSTMHSE---QKERRSAEVAIRRTNIR-LSRVLEKKAEAEKLLAELEEE-RPEQYEVDKE 592
+ + E +KER E+ + N+ L R +E+ A K+LA+L RP ++ DKE
Sbjct: 577 NTEIEVELEAEKERLEKELKKQERNLFILKRKIERSA---KVLAKLNSAWRPADHDADKE 633
Query: 593 GITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVENMHLHWKHRELVKIISKQRKIEAALQ 652
ITEEER RK+G +M + LL+GRRGVFDG +E +H HWKHRE+VK+I+ QR L
Sbjct: 634 MITEEERECFRKIGQKMDSSLLLGRRGVFDGVIEGLHQHWKHREIVKVITMQRSFSQVLY 693
Query: 653 EARTLEVESGGILVAVERVNKGYAIILYRGKNYERPACLRPKTLLTKREAMKRSLEAQRR 712
A+ LE ESGG+LV+++++ +G+AII+YRGKNY RP L PK LLTKREA+ RSLE QR
Sbjct: 694 TAKLLESESGGVLVSIDKLKEGHAIIIYRGKNYRRPIKLVPKNLLTKREALNRSLEMQRI 753
Query: 713 QSLKLHVLELTRNIEKLKLQL 733
SLK + + I LKL+L
Sbjct: 754 GSLKFFAYQRQQAISDLKLKL 774
>gi|357158137|ref|XP_003578028.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Brachypodium distachyon]
Length = 962
Score = 424 bits (1090), Expect = e-115, Method: Compositional matrix adjust.
Identities = 245/596 (41%), Positives = 344/596 (57%), Gaps = 51/596 (8%)
Query: 175 LAELKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRL 234
LAE + ELRRLR + ++++++IG G+T+ IV IH +W EVVK+ E L
Sbjct: 350 LAEKTIPEPELRRLRDAALRMKERMRIGPGGVTQAIVKSIHSKWSVDEVVKMRFEGPPSL 409
Query: 235 NMKRTHDSLERKTGGLVVWRSGSKIILYRGADYKYPYFLADESSTDGASSDDLPNQLVDD 294
NMKRTH+ LE +TGG V+WRSG I+LYRG +Y + + SS + +
Sbjct: 410 NMKRTHEILEDRTGGTVIWRSGRSIVLYRGMNYNLRCVQSYAKIAEVDSSKKVSDVSTVV 469
Query: 295 EGLDETKTHSSGADSAKPSGQSPTNKKVQQTLIHSVGSPDKLRYQLPGEAELVEEADRLL 354
E S AD S + S G+ + + D L
Sbjct: 470 PSCVEHNLQKSSADGVNRS---------TSIVSSSQGATETF------------DIDSFL 508
Query: 355 DGLGPRFTDWWGYDPQPVDADLLPATVPGYRRPFRLLPYGVQPKLTNDEMTTLRRLGRPL 414
D LGPR+ DW G P PVDADLLP VP Y+ PFR LPY + L + EMT LRRL R
Sbjct: 509 DQLGPRYKDWSGRSPIPVDADLLPGVVPDYKPPFRQLPYRTKLSLRDKEMTALRRLARQT 568
Query: 415 PCHFALGRNRNLQGLAAAIVKLWEKCEIAKIAVKRGAQNTNSEMMAQELKRLTGGTLLSR 474
HFALGRNR QGLA+AIVKLWEK I KIA+KRG NT ++ MA+E+K+LTGG L+SR
Sbjct: 569 APHFALGRNREHQGLASAIVKLWEKSTIVKIAIKRGVPNTCNDRMAEEIKKLTGGVLISR 628
Query: 475 DREFIVFYRGKDFLPPAASSAI-------------EERRKHEFSTS----NDSKEEPELG 517
++E+I+FYRG DF+ P + EE + + S S ++ + P++
Sbjct: 629 NKEYIIFYRGNDFMTPKIRQVLVEQQQQAITQQDQEELARLKASASITLIPNALKNPQVA 688
Query: 518 NRHDNSGDNTQDEFGCTNDQKSTMHSEQKERRSAEVAIRRTNI--RLSRVL----EKKAE 571
+ + ND + +K+ R+ + + T++ ++R L K A+
Sbjct: 689 GTLAETREAESRWGDLINDGR------RKKERNHLILAKHTSLLKNMTRKLILAKTKVAK 742
Query: 572 AEKLLAELEEE-RPEQYEVDKEGITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVENMHL 630
AE LA+++E P + D E +T+EER++ R++GL+MKAFL++GRR VF GTV+NMHL
Sbjct: 743 AEMALAKVQEFLSPAELPTDLETVTDEERFLFRRIGLKMKAFLMLGRREVFAGTVQNMHL 802
Query: 631 HWKHRELVKIISKQRKIEAALQEARTLEVESGGILVAVERVNKGYAIILYRGKNYERPAC 690
HWKHRELVKII K + A +LE ESGG+L+++++ KGY+II+YRGKNY+RP
Sbjct: 803 HWKHRELVKIIVKGKSFAQVKHIAISLEAESGGVLISLDKTTKGYSIIVYRGKNYKRPQI 862
Query: 691 LRPKTLLTKREAMKRSLEAQRRQSLKLHVLELTRNIEKLKLQLVKDKEANSLETID 746
L+P+ LLT+R AM RS+E QRR++L H+ L + I KLK QL + + A + D
Sbjct: 863 LKPRNLLTRRRAMARSIELQRREALNHHISILRQKIWKLKSQLAQMRVAGGKQDAD 918
Score = 59.7 bits (143), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 58/107 (54%), Gaps = 5/107 (4%)
Query: 171 EVPTLAELKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCED 230
E+PT E ++ +E R +G+ ++ L +G+ + G V +H W+H E+VKI+ +
Sbjct: 758 ELPTDLE-TVTDEERFLFRRIGLKMKAFLMLGRREVFAGTVQNMHLHWKHRELVKIIVKG 816
Query: 231 LCRLNMKRTHDSLERKTGGLVV----WRSGSKIILYRGADYKYPYFL 273
+K SLE ++GG+++ G II+YRG +YK P L
Sbjct: 817 KSFAQVKHIAISLEAESGGVLISLDKTTKGYSIIVYRGKNYKRPQIL 863
Score = 47.0 bits (110), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 52/105 (49%), Gaps = 7/105 (6%)
Query: 170 KEVPTLAELKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCE 229
+++P +L L KE+ LR L +G+ +G+ + I + W + +VKI +
Sbjct: 543 RQLPYRTKLSLRDKEMTALRRLARQTAPHFALGRNREHQGLASAIVKLWEKSTIVKIAIK 602
Query: 230 ----DLCRLNMKRTHDSLERKTGGLVVWRSGSKIILYRGADYKYP 270
+ C R + +++ TGG+++ R+ II YRG D+ P
Sbjct: 603 RGVPNTCN---DRMAEEIKKLTGGVLISRNKEYIIFYRGNDFMTP 644
Score = 45.4 bits (106), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 52/103 (50%), Gaps = 14/103 (13%)
Query: 588 EVDKEGITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVENMHLHWKHRELVKIISKQRKI 647
E+ ++ I E E LR LRMK + +G GV V+++H W E+VK+ +
Sbjct: 349 ELAEKTIPEPELRRLRDAALRMKERMRIGPGGVTQAIVKSIHSKWSVDEVVKM-----RF 403
Query: 648 EA--ALQEART---LEVESGGILVAVERVNKGYAIILYRGKNY 685
E +L RT LE +GG ++ G +I+LYRG NY
Sbjct: 404 EGPPSLNMKRTHEILEDRTGGTVIW----RSGRSIVLYRGMNY 442
Score = 45.4 bits (106), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 49/92 (53%), Gaps = 7/92 (7%)
Query: 934 LSNRDRLLLRKQALRMKKRPVLAVGRSNIVTGVAKAIKAHFEKYPLAIVNVKGRAKGTSV 993
+++ +R L R+ L+MK L +GR + G + + H++ L + VKG++ V
Sbjct: 766 VTDEERFLFRRIGLKMKA--FLMLGRREVFAGTVQNMHLHWKHRELVKIIVKGKSFA-QV 822
Query: 994 QEVVAKLEEATGAVLVSQEPS----KVILYRG 1021
+ + LE +G VL+S + + +I+YRG
Sbjct: 823 KHIAISLEAESGGVLISLDKTTKGYSIIVYRG 854
Score = 44.7 bits (104), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 52/102 (50%), Gaps = 3/102 (2%)
Query: 933 QLSNRDRLLLRKQALRMKKRPVLAVGRSNIVTGVAKAIKAHFEKYPLAIVNVKGRAKGTS 992
+LS RD+ + + L + P A+GR+ G+A AI +EK + + +K T
Sbjct: 550 KLSLRDKEMTALRRLARQTAPHFALGRNREHQGLASAIVKLWEKSTIVKIAIKRGVPNTC 609
Query: 993 VQEVVAKLEEATGAVLVSQEPSKVILYRGWGAEDESSPRGRQ 1034
+ ++++ TG VL+S+ +I YRG D +P+ RQ
Sbjct: 610 NDRMAEEIKKLTGGVLISRNKEYIIFYRG---NDFMTPKIRQ 648
>gi|302768979|ref|XP_002967909.1| hypothetical protein SELMODRAFT_61058 [Selaginella moellendorffii]
gi|300164647|gb|EFJ31256.1| hypothetical protein SELMODRAFT_61058 [Selaginella moellendorffii]
Length = 557
Score = 417 bits (1073), Expect = e-113, Method: Compositional matrix adjust.
Identities = 237/566 (41%), Positives = 339/566 (59%), Gaps = 59/566 (10%)
Query: 173 PTLAELKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLC 232
P+LAEL L ELRRLRT+ I ++++K+ K GIT +V IH++WR +E+VK+ C+
Sbjct: 26 PSLAELVLPDAELRRLRTMIIHTKERIKVKKLGITRNVVQAIHQKWRTSEIVKLKCDQEV 85
Query: 233 RLNMKRTHDSLERKTGGLVVWRSGSKIILYRGADYKYP---YFLADESSTDGASSDDLPN 289
+NM++ H+ LE++TGGLV+WR+G+ +++YRG DY P ++ ES + S + P
Sbjct: 86 AMNMRKVHEELEKRTGGLVIWRAGTALVIYRGKDYAGPPKERWIPTESVSKPKESVEKPE 145
Query: 290 QLVDDEGLDETKTHSSGADSAKPSGQSPTNKKVQQTLIHSVGSPDKLRYQLPG-EAELVE 348
K+H SG + + ++ + H +P EAE
Sbjct: 146 -----------KSHVSGELLG-------IDTQFKEFVNH-----------IPFIEAEYEM 176
Query: 349 EADRLLDGLGPRFTDWWGYDPQPVDADLLPATVPGYRRPFRLLPYGVQPKLTNDEMTTLR 408
+ DRLL LGPR+ DW G P PVD D LPA ++ P+RLLPYG++PKL++ E T L
Sbjct: 177 QMDRLLAELGPRYADWKGDRPVPVDGDKLPAIDHNFKSPYRLLPYGMEPKLSDKEFTNLV 236
Query: 409 RLGRPLPCHFALGRNRNLQGLAAAIVKLWEKCEIAKIAVKRGAQNTNSEMMAQELKRLTG 468
RL R +P F + RN+ LQGLA A+VKLWEK EI K+A+K+ Q+T++ MA ELKRLTG
Sbjct: 237 RLARQMPPQFVISRNKGLQGLAKAMVKLWEKTEITKVAIKQSVQSTDNAKMADELKRLTG 296
Query: 469 GTLLSRDREFIVFYRGKDFLPPAASSAIEERRKHEFSTSNDSKEEPELGNRHDNSGDNTQ 528
LL R++ ++FYRGKDFLP ++A EER F+ + E R +G T+
Sbjct: 297 CVLLGREKTHMIFYRGKDFLPAPIAAAFEEREAMSFANKD-----VEDKARMLPTGKVTE 351
Query: 529 ---------DEFGCTNDQKSTMHSEQKERRSAEV-----------AIRRTNIRLSRVLEK 568
E K + ++++E+R A V RR +I S + K
Sbjct: 352 KIVHVEQRPQETEADIKLKEWIKNQEEEKRRAIVMKAARAARARRIERRLDIVSSFAIRK 411
Query: 569 KAEAEKLLAELEE-ERPEQYEVDKEGITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVEN 627
K +AE+ L+++E+ +P + D+E ITEEERY L++VGL+MKAFLL+GRRGV+ G +EN
Sbjct: 412 KEKAEEALSKVEKLMKPREPSEDRETITEEERYTLQRVGLKMKAFLLLGRRGVYSGIIEN 471
Query: 628 MHLHWKHRELVKIISKQRKIEAALQEARTLEVESGGILVAVERVNKGYAIILYRGKNYER 687
MHLHWK+RELVK++ K + A+ +E ESGGIL+ + V+KG + YRGKNY R
Sbjct: 472 MHLHWKYRELVKVVYKGKDRMDIEDTAKMIECESGGILIGIYPVSKGQVFLYYRGKNYRR 531
Query: 688 PACLRPKTLLTKREAMKRSLEAQRRQ 713
P LRP LLTKR+A+ R E QRR+
Sbjct: 532 PEELRPHNLLTKRKALARYTETQRRE 557
Score = 40.8 bits (94), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 38/69 (55%)
Query: 953 PVLAVGRSNIVTGVAKAIKAHFEKYPLAIVNVKGRAKGTSVQEVVAKLEEATGAVLVSQE 1012
P + R+ + G+AKA+ +EK + V +K + T ++ +L+ TG VL+ +E
Sbjct: 244 PQFVISRNKGLQGLAKAMVKLWEKTEITKVAIKQSVQSTDNAKMADELKRLTGCVLLGRE 303
Query: 1013 PSKVILYRG 1021
+ +I YRG
Sbjct: 304 KTHMIFYRG 312
Score = 40.0 bits (92), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 47/97 (48%), Gaps = 1/97 (1%)
Query: 172 VPTLAELKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKI-VCED 230
+P E KLS KE L L + + I + +G+ + + W E+ K+ + +
Sbjct: 219 LPYGMEPKLSDKEFTNLVRLARQMPPQFVISRNKGLQGLAKAMVKLWEKTEITKVAIKQS 278
Query: 231 LCRLNMKRTHDSLERKTGGLVVWRSGSKIILYRGADY 267
+ + + D L+R TG +++ R + +I YRG D+
Sbjct: 279 VQSTDNAKMADELKRLTGCVLLGREKTHMIFYRGKDF 315
>gi|302761182|ref|XP_002964013.1| hypothetical protein SELMODRAFT_20706 [Selaginella moellendorffii]
gi|300167742|gb|EFJ34346.1| hypothetical protein SELMODRAFT_20706 [Selaginella moellendorffii]
Length = 555
Score = 412 bits (1059), Expect = e-112, Method: Compositional matrix adjust.
Identities = 237/563 (42%), Positives = 338/563 (60%), Gaps = 56/563 (9%)
Query: 173 PTLAELKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLC 232
P+LAEL L ELRRLRT+ I ++++K+ K GIT +V IH++WR +E+VK+ C+
Sbjct: 27 PSLAELVLPDAELRRLRTMIIHTKERIKVKKLGITRNVVQAIHQKWRTSEIVKLKCDQEV 86
Query: 233 RLNMKRTHDSLERKTGGLVVWRSGSKIILYRGADYKYP---YFLADESSTDGASSDDLPN 289
+NM++ H+ LE++TGGLV+WR+G+ +++YRG DY P ++ ES + S + P
Sbjct: 87 AMNMRKVHEELEKRTGGLVIWRAGAALVIYRGKDYAGPPKERWIPTESVSKPKESVEKPE 146
Query: 290 QLVDDEGLDETKTHSSGADSAKPSGQSPTNKKVQQTLIHSVGSPDKLRYQLPG-EAELVE 348
K+H SG + + ++ + H +P EAE
Sbjct: 147 -----------KSHVSGELLG-------IDTQFKEFVNH-----------IPFIEAEYEM 177
Query: 349 EADRLLDGLGPRFTDWWGYDPQPVDADLLPATVPGYRRPFRLLPYGVQPKLTNDEMTTLR 408
+ DRLL LGPR+ DW G P PVD D LPA ++ P+RLLPYG++PKL++ E T L
Sbjct: 178 QMDRLLAELGPRYADWKGDRPVPVDGDKLPAIDHNFKSPYRLLPYGMEPKLSDREFTNLV 237
Query: 409 RLGRPLPCHFALGRNRNLQGLAAAIVKLWEKCEIAKIAVKRGAQNTNSEMMAQELKRLTG 468
RL R +P F + RN+ LQGLA A+VKLWEK EI K+A+K+ Q+T++ MA ELKRLTG
Sbjct: 238 RLARQMPPQFVISRNKGLQGLAKAMVKLWEKTEITKVAIKQSVQSTDNAKMADELKRLTG 297
Query: 469 GTLLSRDREFIVFYRGKDFLPPAASSAIEERRKHEFSTSNDSKEEPELGNRHDNSGDNTQ 528
LL R++ ++FYRGKDFLP ++A EER F+ + E R +G T+
Sbjct: 298 CVLLGREKTHMIFYRGKDFLPAPIAAAFEEREAMSFANKD-----VEDKARMLPTGKVTE 352
Query: 529 ---------DEFGCTNDQKSTMHSEQKERRSAEV-------AIRRTNIRLSRVLEKKAEA 572
E K + ++++E+R A V RR RL + KK +A
Sbjct: 353 KIVHVEQRPQETEADIKLKEWIKNQEEEKRRAIVMKAARAARARRIERRLDIAVRKKEKA 412
Query: 573 EKLLAELEE-ERPEQYEVDKEGITEEERYMLRKVGLRMKAFLLM-GRRGVFDGTVENMHL 630
E+ L+++E+ +P + D+E ITEEERY L++VGL+MKAFLL+ GRRGV+ G +ENMHL
Sbjct: 413 EEALSKVEKLMKPREPSEDRETITEEERYTLQRVGLKMKAFLLLAGRRGVYSGIIENMHL 472
Query: 631 HWKHRELVKIISKQRKIEAALQEARTLEVESGGILVAVERVNKGYAIILYRGKNYERPAC 690
HWK+RELVK++ K + A+ +E ESGGIL+ + V+KG + YRGKNY RP
Sbjct: 473 HWKYRELVKVVYKGKDRMDIEDTAKMIECESGGILIGIYPVSKGQVFLYYRGKNYRRPEE 532
Query: 691 LRPKTLLTKREAMKRSLEAQRRQ 713
LRP LLTKR+A+ R E QRR+
Sbjct: 533 LRPHNLLTKRKALARYTETQRRE 555
Score = 41.6 bits (96), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 49/89 (55%), Gaps = 2/89 (2%)
Query: 933 QLSNRDRLLLRKQALRMKKRPVLAVGRSNIVTGVAKAIKAHFEKYPLAIVNVKGRAKGTS 992
+LS+R+ L + A +M P + R+ + G+AKA+ +EK + V +K + T
Sbjct: 227 KLSDREFTNLVRLARQMP--PQFVISRNKGLQGLAKAMVKLWEKTEITKVAIKQSVQSTD 284
Query: 993 VQEVVAKLEEATGAVLVSQEPSKVILYRG 1021
++ +L+ TG VL+ +E + +I YRG
Sbjct: 285 NAKMADELKRLTGCVLLGREKTHMIFYRG 313
>gi|357521157|ref|XP_003630867.1| Chloroplastic group IIA intron splicing facilitator CRS1 [Medicago
truncatula]
gi|355524889|gb|AET05343.1| Chloroplastic group IIA intron splicing facilitator CRS1 [Medicago
truncatula]
Length = 676
Score = 410 bits (1054), Expect = e-111, Method: Compositional matrix adjust.
Identities = 237/590 (40%), Positives = 333/590 (56%), Gaps = 105/590 (17%)
Query: 180 LSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRT 239
L +EL RLRT+GI L++K+ I K+G+T ++ IH +W E+VK+ NM
Sbjct: 106 LEKEELSRLRTMGIHLKQKISIPKSGLTRSVLQRIHHQWNTNELVKLKFHQQLVQNMNLA 165
Query: 240 HDSLE------------------------------------------RKTGGLVVWRSGS 257
H+ ++ R+TGGLV+WRSGS
Sbjct: 166 HNIVQVSIPSSRIIPYRMVIVLQLVILCFFFHHRITNLVPSGLYLLVRRTGGLVIWRSGS 225
Query: 258 KIILYRGADYKYPYFLADESSTDGASSDDLPNQLVDDEGLDETKTHSSGADSAKPSGQSP 317
+ +YRG Y+ P T+G NQ E+K ++S + Q P
Sbjct: 226 VMWVYRGKSYQGP--------TNG-------NQ-------HESKGGDEKSESVVLNQQQP 263
Query: 318 TNKKVQQTLIHSVGSPDKLRYQLPGEAELVEEADRLLDGLGPRFTDWWGYDPQPVDADLL 377
N P EAE +R+LD GPRF DWWG PVDADLL
Sbjct: 264 EN-------------------MTPEEAEF----NRMLDDFGPRFVDWWGTGILPVDADLL 300
Query: 378 PATVPGYRRPFRLLPYGVQPKLTNDEMTTLRRLGRPLPCHFALGRNRNLQGLAAAIVKLW 437
P T+PGYR P R+LP + P+LTNDE T + +L + LPCHFALGRNRNLQGLA AI+KLW
Sbjct: 301 PPTIPGYRTPLRILPARMHPRLTNDEHTKMLKLAKALPCHFALGRNRNLQGLACAILKLW 360
Query: 438 EKCEIAKIAVKRGAQNTNSEMMAQELKRLTGGTLLSRDREFIVFYRGKDFLPPAASSAIE 497
EK +AKIAVK G QNTN+E+MA ELK+LTGGTLL R++ +I+ YRGKDF+P + ++ +
Sbjct: 361 EKSLVAKIAVKLGVQNTNNELMALELKKLTGGTLLLRNKYYILIYRGKDFIPTSVAAILS 420
Query: 498 ERRKHEFSTSNDSKEEPELGNRHDNSGDNTQDEFGCTNDQKSTMHSEQKERRSAEVAIRR 557
ER+++ + D E E + + + + + C + ST E+ + +AE
Sbjct: 421 ERQENVQCRAVDVSGEDETSAQAGSMAEFNEAQALC-GREISTEECEKMMKEAAEA---- 475
Query: 558 TNIRLSRVLE------------KKAEAEKLLAELEEER-PEQYEVDKEGITEEERYMLRK 604
TN+RL + +E KK+ AEKLLA+++ P + +E IT+EER M R
Sbjct: 476 TNVRLMKKIERKPAVIHEHTDTKKSRAEKLLAKIDSSMVPVGPDNRRETITDEERVMFRV 535
Query: 605 VGLRMKAFLLMGRRGVFDGTVENMHLHWKHRELVKIISKQRKIEAALQEARTLEVESGGI 664
VGLR+K +L + GVFD +ENMHLHW+ RELVK+I+KQ+ + + A LE +SGGI
Sbjct: 536 VGLRLKVYLQLDTLGVFDSVIENMHLHWRQRELVKLITKQKSLAFVEETASLLEYKSGGI 595
Query: 665 LVAVERVNKGYAIILYRGKNYERPACLRPKTLLTKREAMKRSLEAQRRQS 714
LVA++R+ KG+++I YRGK+Y+RP LR + LLTK +A++ S+ QR +S
Sbjct: 596 LVAIDRLPKGFSLIYYRGKDYKRPITLRHRNLLTKTKALQHSISMQRHES 645
>gi|414870652|tpg|DAA49209.1| TPA: chloroplast RNA splicing1 [Zea mays]
Length = 715
Score = 404 bits (1039), Expect = e-109, Method: Compositional matrix adjust.
Identities = 244/590 (41%), Positives = 329/590 (55%), Gaps = 66/590 (11%)
Query: 167 EKEKEVPTLAELKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAE---V 223
EK+ PT AE +L EL RLR L G+ + + KAG+T+ +V + W E
Sbjct: 157 EKKPREPTRAETELETHELHRLRRLARGIGRWARAKKAGVTDEVVKEVRREWASGEELAA 216
Query: 224 VKIVCEDLCRLNMKRTHDSLERKTGGLVVWRSGSKIILYRGADYKYPYFLADESSTDGAS 283
V+IV + R +M R + LE KTGGLVVW G +YRG+ Y+ +
Sbjct: 217 VRIV--EPLRRSMDRAREILEIKTGGLVVWTKGDMHFVYRGSKYQ----------QNAKH 264
Query: 284 SDDLPNQLVDDEGLDETKTHSSGADSAKPSGQSPTNKKVQQTLIHSVGSPDKLRYQLPGE 343
S + D+ E G +P V+ TL
Sbjct: 265 SHTFLTNVHKDDAFQENDQSICGQKDEEP---------VKGTLYE--------------- 300
Query: 344 AELVEEADRLLDGLGPRFTDWWGYDPQPVDADLLPATVPGYRRPFRLLPYGVQPKLTNDE 403
E +RLLD LGPRF DWW P PVDADLLP VPG++ P+RL P GV+P L ++E
Sbjct: 301 ----REVNRLLDTLGPRFVDWWWDTPLPVDADLLPEFVPGFKTPYRLCPPGVRPTLADEE 356
Query: 404 MTTLRRLGRPLPCHFALGRNRNLQGLAAAIVKLWEKCEIAKIAVKRGAQNTNSEMMAQEL 463
+T LR+L R LP HFALGRN LQGLAAAI+KLWEK IAKIAVK G QNTN+E MA L
Sbjct: 357 LTYLRKLARLLPTHFALGRNTRLQGLAAAILKLWEKSLIAKIAVKIGIQNTNNEQMAWNL 416
Query: 464 KRLTGGTLLSRDREFIVFYRGKDFLPPAASSAIEERRKH-----------------EFST 506
K LTGGT++ R+++FI+ YRGKDFLP + + +R
Sbjct: 417 KHLTGGTVILRNKDFIILYRGKDFLPGGVAQTVIQREAQVHDEQVKEEEARLKAVDSLQM 476
Query: 507 SNDSKEEPELGNRHDNSGDNTQDEFGCTNDQKS-TMHSEQKERRSAEVAIRRTNIRLSRV 565
+ EE LG + G + + F N + S TM + E+ E ++ +LS V
Sbjct: 477 VGELSEESSLGTFREYQGFHAK--FVHENTENSNTMIELEAEKYRLEKELKDHEWKLS-V 533
Query: 566 LEKKAE-AEKLLAELEEE-RPEQYEVDKEGITEEERYMLRKVGLRMKAFLLMGRRGVFDG 623
L KK E + + LA+L P + D+E +TEEE+ M R++G +M +L+GRRG+FDG
Sbjct: 534 LNKKIERSNQALAKLHSSWSPSEQSADREHLTEEEKIMFRRIGRKMDGLVLLGRRGIFDG 593
Query: 624 TVENMHLHWKHRELVKIISKQRKIEAALQEARTLEVESGGILVAVERVNKGYAIILYRGK 683
+E +H HWKH+E+VK+I+KQ + + A LEVE+GGIL+AVE++ +AIILYRGK
Sbjct: 594 VIEEIHQHWKHKEVVKVITKQNQTRQIMYAASLLEVETGGILIAVEKLTTSHAIILYRGK 653
Query: 684 NYERPACLRPKTLLTKREAMKRSLEAQRRQSLKLHVLELTRNIEKLKLQL 733
NY RPA LLTKREA++RS+E QRR S+K V E ++I +LK +L
Sbjct: 654 NYRRPAKSSFSNLLTKREALRRSIEVQRRGSMKYFVRERQKSILELKRKL 703
Score = 55.5 bits (132), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 71/142 (50%), Gaps = 21/142 (14%)
Query: 148 QLNKEVGRQKWLAKNSKMNEK-EKEVPTLAELK--------------LSGKELRRLRTLG 192
+L KE+ +W K S +N+K E+ LA+L L+ +E R +G
Sbjct: 519 RLEKELKDHEW--KLSVLNKKIERSNQALAKLHSSWSPSEQSADREHLTEEEKIMFRRIG 576
Query: 193 IGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRTHDSLERKTGGLVV 252
+ + +G+ GI +G++ IH+ W+H EVVK++ + + LE +TGG+++
Sbjct: 577 RKMDGLVLLGRRGIFDGVIEEIHQHWKHKEVVKVITKQNQTRQIMYAASLLEVETGGILI 636
Query: 253 ----WRSGSKIILYRGADYKYP 270
+ IILYRG +Y+ P
Sbjct: 637 AVEKLTTSHAIILYRGKNYRRP 658
>gi|242078893|ref|XP_002444215.1| hypothetical protein SORBIDRAFT_07g015120 [Sorghum bicolor]
gi|241940565|gb|EES13710.1| hypothetical protein SORBIDRAFT_07g015120 [Sorghum bicolor]
Length = 728
Score = 404 bits (1037), Expect = e-109, Method: Compositional matrix adjust.
Identities = 249/594 (41%), Positives = 343/594 (57%), Gaps = 60/594 (10%)
Query: 167 EKEKEVPTLAELKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAE---V 223
EK+ PT AE +L EL RLR L G+ + + KAG+T+ +V + W E
Sbjct: 156 EKKPRKPTRAETELETDELDRLRRLARGMGRWARAKKAGVTDEVVEEMRREWASGEELAA 215
Query: 224 VKIVCEDLCRLNMKRTHDSLERKTGGLVVWRSGSKIILYRGADYKYPYFLADESSTDGAS 283
V+IV + R +M R + LE KTGGLVVW G +Y+G+ Y+ A S T +
Sbjct: 216 VRIV--EPLRRSMDRAREILEIKTGGLVVWTKGDIHFVYKGSKYQQN---AKHSHTFVTN 270
Query: 284 SDDLPNQLVDDEGLDETKTHSSGADSAKPSGQSPTNKKVQQTLIHSVGSPDKLRYQLPGE 343
V L + D+ + + QS +K ++ P +
Sbjct: 271 --------VHKGSLVKQNVRGEADDAFQENDQSICGQKDEE----------------PVK 306
Query: 344 AELVE-EADRLLDGLGPRFTDWWGYDPQPVDADLLPATVPGYRRPFRLLPYGVQPKLTND 402
L E E +RLLD LGPRF DWW P PVDADLLP +PG++ PFR P GV+P L ++
Sbjct: 307 GTLYEREVNRLLDTLGPRFVDWWWDTPLPVDADLLPEFIPGFKTPFRQCPPGVRPTLADE 366
Query: 403 EMTTLRRLGRPLPCHFALGRNRNLQGLAAAIVKLWEKCEIAKIAVKRGAQNTNSEMMAQE 462
E+T LR+L RPLP HFALGRN LQGLAAAI+KLWEK IAKIAVK G QNTN+E MA
Sbjct: 367 ELTYLRKLARPLPTHFALGRNTRLQGLAAAILKLWEKSLIAKIAVKVGIQNTNNEQMAWN 426
Query: 463 LKRLTGGTLLSRDREFIVFYRGKDFLPPAASSAIEERRKHEFSTSNDSKEEPELGNRHDN 522
LK LTGGT++ R+++F++ YRGKDFLP + + +R E ++ +E E + +
Sbjct: 427 LKHLTGGTVILRNKDFVILYRGKDFLPGGVAQTVIQR---EAQVDDEQVKEEEARLKAVD 483
Query: 523 S----GDNTQDE----------------FGCTNDQKS-TMHSEQKERRSAEVAIRRTNIR 561
S G+ + DE F N +KS TM + E+ E ++ +
Sbjct: 484 SLQMVGELSSDEESSVGTFREYKDFHADFVHANTEKSNTMIELEAEKYRLEKELKDHEWK 543
Query: 562 LSRVLEKKAE-AEKLLAELEEE-RPEQYEVDKEGITEEERYMLRKVGLRMKAFLLMGRRG 619
LS +L KK E + + LA+L P + D+E +TEEE+ M R++G +M +L+GRRG
Sbjct: 544 LS-ILNKKIERSNQALAKLRSSWSPSEQSADRELLTEEEKIMFRRIGRKMDGLVLLGRRG 602
Query: 620 VFDGTVENMHLHWKHRELVKIISKQRKIEAALQEARTLEVESGGILVAVERVNKGYAIIL 679
+FDG +E +H HWKH+E+VK+I+KQ + + A LEVE+GGIL+AVE++ +AIIL
Sbjct: 603 IFDGVIEEIHQHWKHKEVVKVITKQNQARQIMYTANLLEVETGGILIAVEKLTTSHAIIL 662
Query: 680 YRGKNYERPACLRPKTLLTKREAMKRSLEAQRRQSLKLHVLELTRNIEKLKLQL 733
YRGKNY RPA LLTKREA++RSLE QRR S+K V E ++I +LK +L
Sbjct: 663 YRGKNYRRPAKSSFSNLLTKREALRRSLEVQRRGSMKYFVRERQKSISELKRRL 716
Score = 40.8 bits (94), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 43/78 (55%), Gaps = 3/78 (3%)
Query: 947 LRMKKRPV---LAVGRSNIVTGVAKAIKAHFEKYPLAIVNVKGRAKGTSVQEVVAKLEEA 1003
LR RP+ A+GR+ + G+A AI +EK +A + VK + T+ +++ L+
Sbjct: 371 LRKLARPLPTHFALGRNTRLQGLAAAILKLWEKSLIAKIAVKVGIQNTNNEQMAWNLKHL 430
Query: 1004 TGAVLVSQEPSKVILYRG 1021
TG ++ + VILYRG
Sbjct: 431 TGGTVILRNKDFVILYRG 448
>gi|357145812|ref|XP_003573775.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Brachypodium distachyon]
Length = 730
Score = 393 bits (1009), Expect = e-106, Method: Compositional matrix adjust.
Identities = 241/595 (40%), Positives = 336/595 (56%), Gaps = 54/595 (9%)
Query: 167 EKEKEVPTLAELKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHA-EVVK 225
EK+ PT AE +L L RLR G+ + + KAG+T+ +V + W E+
Sbjct: 150 EKKVREPTRAERELGPALLERLRRAARGMDRWARAKKAGVTDEVVEDVRSEWSSGQELAG 209
Query: 226 IVCEDLCRLNMKRTHDSLERKTGGLVVWRSGSKIILYRGADY----KYPY-FLADESSTD 280
+ + R M R + LE KTGGLVVW G +YRG+DY KY + F+AD
Sbjct: 210 VRIVEPLRRCMDRAREILEIKTGGLVVWTKGDIHFVYRGSDYVHNMKYSHNFVADIQKVR 269
Query: 281 GASSDDLPNQLVDDEGLDETKTHSSGADSAKPSGQSPTNKKVQQTLIHSVGSPDKLRYQL 340
N E L + + GA K S S D Y+
Sbjct: 270 TPQEKYKSNV----ELLGKHNGKAKGAFREKDS------------------SIDIQTYEE 307
Query: 341 PGEAELVE-EADRLLDGLGPRFTDWWGYDPQPVDADLLPATVPGYRRPFRLLPYGVQPKL 399
P + L E E +RLLD LGPRF DWW P PVDADLLP V G++ PFR P GV+P L
Sbjct: 308 PVKGTLYEREVNRLLDSLGPRFIDWWWNTPLPVDADLLPEVVLGFKTPFRQCPPGVRPTL 367
Query: 400 TNDEMTTLRRLGRPLPCHFALGRNRNLQGLAAAIVKLWEKCEIAKIAVKRGAQNTNSEMM 459
++E+T LR+L RPLP HFALGRN LQGLAAAI+KLWEK +AKIAVK G +NTN+E M
Sbjct: 368 ADEELTYLRKLARPLPAHFALGRNTKLQGLAAAILKLWEKSLVAKIAVKVGIENTNNEQM 427
Query: 460 AQELKRLTGGTLLSRDREFIVFYRGKDFLPPAASSAIEERRKHEFSTSNDSKEEPE---- 515
A LK LTGGT++ R+++FI+ YRGKDFLP ++ + HE +E E
Sbjct: 428 AWNLKHLTGGTIILRNKDFIILYRGKDFLPAGVKQSVIQ---HEAQVDAQQVKEEEARLS 484
Query: 516 ----------LGNRHDNSGDNTQ-DEFGCTNDQKSTMHSE-----QKERRSAEVAIRRTN 559
L + ++G + +F ++T++++ + E+ E ++
Sbjct: 485 GTESLQMFAGLPSVESSAGTFREYQDFQVNQAHETTINNKAMIELEAEKHRLEKELKDQE 544
Query: 560 IRLSRVLEKKAEAEKLLAELEEE-RPEQYEVDKEGITEEERYMLRKVGLRMKAFLLMGRR 618
RL + +K + + LA+L P + DKE +TEEER + RK+GL+M +L+GRR
Sbjct: 545 RRLFILTKKIERSNQALAKLHSSWNPSEQSADKELLTEEERMIFRKIGLKMDEHVLLGRR 604
Query: 619 GVFDGTVENMHLHWKHRELVKIISKQRKIEAALQEARTLEVESGGILVAVERVNKGYAII 678
GVFDG +E +H HWKH+E+VK+I+KQ + + LEVE+GG+L+A +++ +AII
Sbjct: 605 GVFDGVIEEIHQHWKHKEIVKVITKQNQSYQITYTSMLLEVETGGVLIATQKLPHSHAII 664
Query: 679 LYRGKNYERPACLRPKTLLTKREAMKRSLEAQRRQSLKLHVLELTRNIEKLKLQL 733
LYRGKNY RP P LLTKREA++RS+E QRR S+K +V E ++IE+L+ +L
Sbjct: 665 LYRGKNYRRPEK-SPSNLLTKREALRRSVEVQRRGSMKYYVWERQKSIEELQWRL 718
Score = 40.0 bits (92), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 43/78 (55%), Gaps = 3/78 (3%)
Query: 947 LRMKKRPV---LAVGRSNIVTGVAKAIKAHFEKYPLAIVNVKGRAKGTSVQEVVAKLEEA 1003
LR RP+ A+GR+ + G+A AI +EK +A + VK + T+ +++ L+
Sbjct: 375 LRKLARPLPAHFALGRNTKLQGLAAAILKLWEKSLVAKIAVKVGIENTNNEQMAWNLKHL 434
Query: 1004 TGAVLVSQEPSKVILYRG 1021
TG ++ + +ILYRG
Sbjct: 435 TGGTIILRNKDFIILYRG 452
>gi|115476078|ref|NP_001061635.1| Os08g0360100 [Oryza sativa Japonica Group]
gi|75132343|sp|Q6YYA3.1|CRS1_ORYSJ RecName: Full=Chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic; AltName: Full=Chloroplastic RNA
splicing factor 1; AltName: Full=Protein CHLOROPLAST RNA
SPLICING 1; Flags: Precursor
gi|38637564|dbj|BAD03815.1| putative CRS1 [Oryza sativa Japonica Group]
gi|113623604|dbj|BAF23549.1| Os08g0360100 [Oryza sativa Japonica Group]
Length = 725
Score = 392 bits (1006), Expect = e-106, Method: Compositional matrix adjust.
Identities = 242/587 (41%), Positives = 330/587 (56%), Gaps = 43/587 (7%)
Query: 167 EKEKEVPTLAELKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERW-RHAEVVK 225
EK+ VPT AE +L EL RLR G + + KAGIT+ +V + +W + E+
Sbjct: 142 EKKTRVPTRAETELEAGELERLRRAARGKERWARAKKAGITDEVVEEVRGQWAKGQELAG 201
Query: 226 IVCEDLCRLNMKRTHDSLERKTGGLVVWRSGSKIILYRGADYKYPYFLADESSTDGASSD 285
+ + R M R + LE KTGGLVVW G +YRG+ Y +
Sbjct: 202 VRIVEPLRRCMDRAREILEIKTGGLVVWTRGGIHFVYRGSSY----------LENAKRHR 251
Query: 286 DLPNQLVDDEGLDETKTHSSGADSAKPSGQSPTNKKVQQTLIHSVGSPDKLRYQLPGEAE 345
D N +E L S S P+ Q K +TL + + P +
Sbjct: 252 DFVNY---NEEL-------SPVTSNNPTSQGKYWSK-DETLTNDNDE-ADDKDDKPIKGT 299
Query: 346 LVE-EADRLLDGLGPRFTDWWGYDPQPVDADLLPATVPGYRRPFRLLPYGVQPKLTNDEM 404
L E E +RLLD LGPRF DWW P PVDADLLP VP ++ PFR P GV+P L ++E+
Sbjct: 300 LYEREVNRLLDSLGPRFIDWWWNTPLPVDADLLPEVVPDFKTPFRQCPPGVRPALADEEL 359
Query: 405 TTLRRLGRPLPCHFALGRNRNLQGLAAAIVKLWEKCEIAKIAVKRGAQNTNSEMMAQELK 464
T LR+ RPLP HF LGRN LQGLAAAI+KLWEK IAK+AVK G QNTN E MA+ LK
Sbjct: 360 TYLRKHARPLPTHFVLGRNTKLQGLAAAILKLWEKSLIAKVAVKVGIQNTNHEQMARNLK 419
Query: 465 RLTGGTLLSRDREFIVFYRGKDFLPPAASSAIEERRKHEFSTSNDSKEEPEL-------- 516
RLTGGT++ R++++I+ YRGKDFLP + ++ E R+ + +EE L
Sbjct: 420 RLTGGTVILRNKDYIIIYRGKDFLPGGVAESVIE-RESQVHDQQAKEEEARLKMADSLQM 478
Query: 517 --GNRHDNSGDNTQDEFGCTNDQKSTMHSEQKERRSAEVAIRR-------TNIRLSRVLE 567
G + S T E+ +D + +E R E R RLS + +
Sbjct: 479 IVGLSSERSYVGTFREYQDFHDSHARRTTENNFRIQLEAKKHRLEKELKDQEWRLSMLTK 538
Query: 568 KKAEAEKLLAELEEE-RPEQYEVDKEGITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVE 626
K + ++LA+L P + + D+E +TEEER + RK+GL+M +L+GRRGVF+G +E
Sbjct: 539 KIERSNQVLAKLHSSWSPSKKDGDRELLTEEERRIFRKIGLKMDEHVLLGRRGVFEGVIE 598
Query: 627 NMHLHWKHRELVKIISKQRKIEAALQEARTLEVESGGILVAVERVNKGYAIILYRGKNYE 686
+H HWKH+E+VK+I+KQ + + LEVE+GG L+A+ER +AIILYRGKNY
Sbjct: 599 EIHQHWKHKEVVKVITKQNQASQITYTSMMLEVETGGTLIAIERFTTSHAIILYRGKNYR 658
Query: 687 RPACLRPKTLLTKREAMKRSLEAQRRQSLKLHVLELTRNIEKLKLQL 733
RP P LLTKREA++RS+E QRR S+K E ++I++LK +L
Sbjct: 659 RPTKSAPSNLLTKREALQRSIEVQRRGSMKYFAQERKKSIDELKREL 705
Score = 64.7 bits (156), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 77/143 (53%), Gaps = 21/143 (14%)
Query: 147 NQLNKEVGRQKW-LAKNSKMNEKEKEVPTLAELK--------------LSGKELRRLRTL 191
++L KE+ Q+W L+ +K E+ +V LA+L L+ +E R R +
Sbjct: 520 HRLEKELKDQEWRLSMLTKKIERSNQV--LAKLHSSWSPSKKDGDRELLTEEERRIFRKI 577
Query: 192 GIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRTHDSLERKTGGLV 251
G+ + + + +G+ G+ EG++ IH+ W+H EVVK++ + + T LE +TGG +
Sbjct: 578 GLKMDEHVLLGRRGVFEGVIEEIHQHWKHKEVVKVITKQNQASQITYTSMMLEVETGGTL 637
Query: 252 V----WRSGSKIILYRGADYKYP 270
+ + + IILYRG +Y+ P
Sbjct: 638 IAIERFTTSHAIILYRGKNYRRP 660
>gi|162463484|ref|NP_001105008.1| chloroplastic group IIA intron splicing facilitator CRS1,
chloroplastic precursor [Zea mays]
gi|75173308|sp|Q9FYT6.1|CRS1_MAIZE RecName: Full=Chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic; AltName: Full=Chloroplastic RNA
splicing factor 1; AltName: Full=Protein CHLOROPLAST RNA
SPLICING 1; Flags: Precursor
gi|9837550|gb|AAG00595.1|AF290414_1 CRS1 [Zea mays]
Length = 715
Score = 392 bits (1006), Expect = e-106, Method: Compositional matrix adjust.
Identities = 245/590 (41%), Positives = 329/590 (55%), Gaps = 66/590 (11%)
Query: 167 EKEKEVPTLAELKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAE---V 223
EK+ PT AE +L ELRRLR L G+ + + KAG+T+ +V + W E
Sbjct: 157 EKKPREPTRAETELETHELRRLRRLARGIGRWARAKKAGVTDEVVKEVRREWASGEELAA 216
Query: 224 VKIVCEDLCRLNMKRTHDSLERKTGGLVVWRSGSKIILYRGADYKYPYFLADESSTDGAS 283
V+IV + R +M R + LE KTGGLVVW G +YRG+ Y+ +
Sbjct: 217 VRIV--EPLRRSMDRAREILEIKTGGLVVWTKGDMHFVYRGSKYQ----------QNAKH 264
Query: 284 SDDLPNQLVDDEGLDETKTHSSGADSAKPSGQSPTNKKVQQTLIHSVGSPDKLRYQLPGE 343
S + D+ E G +P V+ TL
Sbjct: 265 SHTFLTNVHKDDAFQENDQSICGQKDEEP---------VKGTLYE--------------- 300
Query: 344 AELVEEADRLLDGLGPRFTDWWGYDPQPVDADLLPATVPGYRRPFRLLPYGVQPKLTNDE 403
E +RLLD LGPRF DWW P PVDADLLP VPG + P+RL P GV+P L ++E
Sbjct: 301 ----REVNRLLDTLGPRFVDWWWDTPLPVDADLLPEFVPGSKTPYRLCPPGVRPTLADEE 356
Query: 404 MTTLRRLGRPLPCHFALGRNRNLQGLAAAIVKLWEKCEIAKIAVKRGAQNTNSEMMAQEL 463
+T LR+L R LP HFALGRN LQGLAAAI+KLWEK IAKIAVK G QNTN+E MA L
Sbjct: 357 LTYLRKLARLLPTHFALGRNTRLQGLAAAILKLWEKSLIAKIAVKIGIQNTNNEQMAWNL 416
Query: 464 KRLTGGTLLSRDREFIVFYRGKDFLPPAASSAIEERRKH-----------------EFST 506
K LTGGT++ R+++FI+ YRGKDFLP + + +R
Sbjct: 417 KHLTGGTVILRNKDFIILYRGKDFLPGGVAQTVIQREAQVHDEQVKEEEARLKAVDSLQM 476
Query: 507 SNDSKEEPELGNRHDNSGDNTQDEFGCTNDQKS-TMHSEQKERRSAEVAIRRTNIRLSRV 565
+ EE LG + G + + F N + S TM + E+ E ++ +LS V
Sbjct: 477 VGELSEESSLGTFREYQGFHAK--FVHENTENSNTMIELEAEKYRLEKELKDHEWKLS-V 533
Query: 566 LEKKAE-AEKLLAELEEE-RPEQYEVDKEGITEEERYMLRKVGLRMKAFLLMGRRGVFDG 623
L KK E + + LA+L P + D+E +TEEE+ M R++G +M +L+GRRG+FDG
Sbjct: 534 LNKKIERSNQALAKLHSSWSPSEQSADREHLTEEEKIMFRRIGRKMDGLVLLGRRGIFDG 593
Query: 624 TVENMHLHWKHRELVKIISKQRKIEAALQEARTLEVESGGILVAVERVNKGYAIILYRGK 683
+E +H HWKH+E+VK+I+KQ + + A LEVE+GGIL+AVE++ +AIILYRGK
Sbjct: 594 VIEEIHQHWKHKEVVKVITKQNQTRQIMYAASLLEVETGGILIAVEKLTTSHAIILYRGK 653
Query: 684 NYERPACLRPKTLLTKREAMKRSLEAQRRQSLKLHVLELTRNIEKLKLQL 733
NY RPA LLTKREA++RS+E QRR S+K V E ++I +LK +L
Sbjct: 654 NYRRPAKSSFSNLLTKREALRRSIEVQRRGSMKYFVRERQKSILELKRKL 703
Score = 55.5 bits (132), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 71/142 (50%), Gaps = 21/142 (14%)
Query: 148 QLNKEVGRQKWLAKNSKMNEK-EKEVPTLAELK--------------LSGKELRRLRTLG 192
+L KE+ +W K S +N+K E+ LA+L L+ +E R +G
Sbjct: 519 RLEKELKDHEW--KLSVLNKKIERSNQALAKLHSSWSPSEQSADREHLTEEEKIMFRRIG 576
Query: 193 IGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRTHDSLERKTGGLVV 252
+ + +G+ GI +G++ IH+ W+H EVVK++ + + LE +TGG+++
Sbjct: 577 RKMDGLVLLGRRGIFDGVIEEIHQHWKHKEVVKVITKQNQTRQIMYAASLLEVETGGILI 636
Query: 253 ----WRSGSKIILYRGADYKYP 270
+ IILYRG +Y+ P
Sbjct: 637 AVEKLTTSHAIILYRGKNYRRP 658
>gi|222640429|gb|EEE68561.1| hypothetical protein OsJ_27045 [Oryza sativa Japonica Group]
Length = 725
Score = 392 bits (1006), Expect = e-106, Method: Compositional matrix adjust.
Identities = 242/587 (41%), Positives = 330/587 (56%), Gaps = 43/587 (7%)
Query: 167 EKEKEVPTLAELKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERW-RHAEVVK 225
EK+ VPT AE +L EL RLR G + + KAGIT+ +V + +W + E+
Sbjct: 142 EKKTRVPTRAETELEAGELERLRRAARGKERWARAKKAGITDEVVEEVRGQWAKGQELAG 201
Query: 226 IVCEDLCRLNMKRTHDSLERKTGGLVVWRSGSKIILYRGADYKYPYFLADESSTDGASSD 285
+ + R M R + LE KTGGLVVW G +YRG+ Y +
Sbjct: 202 VRIVEPLRRCMDRAREILEIKTGGLVVWTRGGIHFVYRGSSY----------LENAKRHR 251
Query: 286 DLPNQLVDDEGLDETKTHSSGADSAKPSGQSPTNKKVQQTLIHSVGSPDKLRYQLPGEAE 345
D N +E L S S P+ Q K +TL + + P +
Sbjct: 252 DFVNY---NEEL-------SPVTSNNPTSQGKYWSK-DETLTNDNDE-ADDKDDKPIKGT 299
Query: 346 LVE-EADRLLDGLGPRFTDWWGYDPQPVDADLLPATVPGYRRPFRLLPYGVQPKLTNDEM 404
L E E +RLLD LGPRF DWW P PVDADLLP VP ++ PFR P GV+P L ++E+
Sbjct: 300 LYEREVNRLLDSLGPRFIDWWWNTPLPVDADLLPEVVPDFKTPFRQCPPGVRPALADEEL 359
Query: 405 TTLRRLGRPLPCHFALGRNRNLQGLAAAIVKLWEKCEIAKIAVKRGAQNTNSEMMAQELK 464
T LR+ RPLP HF LGRN LQGLAAAI+KLWEK IAK+AVK G QNTN E MA+ LK
Sbjct: 360 TYLRKHARPLPTHFVLGRNTKLQGLAAAILKLWEKSLIAKVAVKVGIQNTNHEQMARNLK 419
Query: 465 RLTGGTLLSRDREFIVFYRGKDFLPPAASSAIEERRKHEFSTSNDSKEEPEL-------- 516
RLTGGT++ R++++I+ YRGKDFLP + ++ E R+ + +EE L
Sbjct: 420 RLTGGTVILRNKDYIIIYRGKDFLPGGVAESVIE-RESQVHDQQAKEEEARLKMADSLQM 478
Query: 517 --GNRHDNSGDNTQDEFGCTNDQKSTMHSEQKERRSAEVAIRR-------TNIRLSRVLE 567
G + S T E+ +D + +E R E R RLS + +
Sbjct: 479 IVGLSSERSYVGTFREYQDFHDSHARRTTENNFRIQLEAKKHRLEKELKDQEWRLSMLTK 538
Query: 568 KKAEAEKLLAELEEE-RPEQYEVDKEGITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVE 626
K + ++LA+L P + + D+E +TEEER + RK+GL+M +L+GRRGVF+G +E
Sbjct: 539 KIERSNQVLAKLHSSWSPSKKDGDRELLTEEERRIFRKIGLKMDEHVLLGRRGVFEGVIE 598
Query: 627 NMHLHWKHRELVKIISKQRKIEAALQEARTLEVESGGILVAVERVNKGYAIILYRGKNYE 686
+H HWKH+E+VK+I+KQ + + LEVE+GG L+A+ER +AIILYRGKNY
Sbjct: 599 EIHQHWKHKEVVKVITKQNQASQITYTSMMLEVETGGTLIAIERFTTSHAIILYRGKNYR 658
Query: 687 RPACLRPKTLLTKREAMKRSLEAQRRQSLKLHVLELTRNIEKLKLQL 733
RP P LLTKREA++RS+E QRR S+K E ++I++LK +L
Sbjct: 659 RPTKSAPSNLLTKREALQRSIEVQRRGSMKYFAQERKKSIDELKREL 705
Score = 64.7 bits (156), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 77/143 (53%), Gaps = 21/143 (14%)
Query: 147 NQLNKEVGRQKW-LAKNSKMNEKEKEVPTLAELK--------------LSGKELRRLRTL 191
++L KE+ Q+W L+ +K E+ +V LA+L L+ +E R R +
Sbjct: 520 HRLEKELKDQEWRLSMLTKKIERSNQV--LAKLHSSWSPSKKDGDRELLTEEERRIFRKI 577
Query: 192 GIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRTHDSLERKTGGLV 251
G+ + + + +G+ G+ EG++ IH+ W+H EVVK++ + + T LE +TGG +
Sbjct: 578 GLKMDEHVLLGRRGVFEGVIEEIHQHWKHKEVVKVITKQNQASQITYTSMMLEVETGGTL 637
Query: 252 V----WRSGSKIILYRGADYKYP 270
+ + + IILYRG +Y+ P
Sbjct: 638 IAIERFTTSHAIILYRGKNYRRP 660
>gi|326492786|dbj|BAJ90249.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 730
Score = 387 bits (994), Expect = e-104, Method: Compositional matrix adjust.
Identities = 236/593 (39%), Positives = 327/593 (55%), Gaps = 41/593 (6%)
Query: 167 EKEKEVPTLAELKLSGKELRRLRTLGIGLRKK-LKIGKAGITEGIVNGIHERWRHA-EVV 224
+K+ PT AE L EL RLR G L+ KAG+T+ +V + W E+
Sbjct: 141 QKKARQPTPAERLLDPAELDRLRRAARGTGDGWLRAKKAGVTDEVVEDVCRVWSGGQELA 200
Query: 225 KIVCEDLCRLNMKRTHDSLERKTGGLVVWRSGSKIILYRGADYKYPYFLADESSTD---- 280
+ + R M R + LE K+GGLVVW G +YRG+ Y +S D
Sbjct: 201 AVQVVEPLRRCMDRAREILEIKSGGLVVWTKGDVHFVYRGSSYLENIKHRQKSIADIQRV 260
Query: 281 GASSDDLPNQLVDDEGLDETKTHSSGADSAKPSGQSPTNKKVQQTLIHSVGSPDKLRYQL 340
P E E T+ + G P+ +H+ Y+
Sbjct: 261 PLEKCTAPGPQWKHESNAEPSTNHNDDAHGVFRGIDPS------LAVHA--------YEE 306
Query: 341 PGEAELVE-EADRLLDGLGPRFTDWWGYDPQPVDADLLPATVPGYRRPFRLLPYGVQPKL 399
P E L E E +RLLD LGPRF DWW P PVDADLLP VPG++ PFR P GV+P L
Sbjct: 307 PVEGTLYEREVNRLLDSLGPRFVDWWWNTPLPVDADLLPEVVPGFKTPFRQCPPGVRPTL 366
Query: 400 TNDEMTTLRRLGRPLPCHFALGRNRNLQGLAAAIVKLWEKCEIAKIAVKRGAQNTNSEMM 459
++E+T LR+L RPLP HFALGRN LQGLAAA++KLWEK IAKIAVK G QNTN+E M
Sbjct: 367 ADEELTYLRKLARPLPTHFALGRNTRLQGLAAAVLKLWEKSLIAKIAVKVGIQNTNNEQM 426
Query: 460 AQELKRLTGGTLLSRDREFIVFYRGKDFLPPAASSAIEERRKHEFSTS----------ND 509
A LK LTGGT++ R+++F++ YRGKDFLP ++ E+ ++ D
Sbjct: 427 AWNLKHLTGGTIILRNKDFVILYRGKDFLPGGVKQSVIEQEARVYAQQVKEEEARLMVMD 486
Query: 510 S--------KEEPELGNRHDNSGDNTQDEFGCTNDQKSTMHSEQKERRSAEVAIRRTNIR 561
S EE +G+ + D + T + + + E+ E ++ R
Sbjct: 487 SLKMFAGLPSEESSVGSFREYQ-DFQLNHVQETTENNMALIELEAEKHRLEKELKDQERR 545
Query: 562 LSRVLEKKAEAEKLLAELEEE-RPEQYEVDKEGITEEERYMLRKVGLRMKAFLLMGRRGV 620
L + +K + + LA+L P + DKE +TEEER + RK+GL+M +L+GRRG+
Sbjct: 546 LFILTKKIERSNEALAKLHNSWNPSEQSADKELLTEEERMIFRKIGLKMDEHVLLGRRGI 605
Query: 621 FDGTVENMHLHWKHRELVKIISKQRKIEAALQEARTLEVESGGILVAVERVNKGYAIILY 680
FDG +E +H HWKH+E+VK+I+KQ + + LEVE+GG+L+A +++ +AIILY
Sbjct: 606 FDGVIEEIHQHWKHKEIVKVITKQNQAYQITYTSMLLEVETGGMLIATQKLTNSHAIILY 665
Query: 681 RGKNYERPACLRPKTLLTKREAMKRSLEAQRRQSLKLHVLELTRNIEKLKLQL 733
RGKNY RP P LLTKREA++RS+E QRR S+K +V E ++IE L+ +L
Sbjct: 666 RGKNYHRPTKSSPSNLLTKREALRRSVEVQRRGSMKYYVWERHKSIEDLQWRL 718
Score = 40.4 bits (93), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 43/78 (55%), Gaps = 3/78 (3%)
Query: 947 LRMKKRPV---LAVGRSNIVTGVAKAIKAHFEKYPLAIVNVKGRAKGTSVQEVVAKLEEA 1003
LR RP+ A+GR+ + G+A A+ +EK +A + VK + T+ +++ L+
Sbjct: 374 LRKLARPLPTHFALGRNTRLQGLAAAVLKLWEKSLIAKIAVKVGIQNTNNEQMAWNLKHL 433
Query: 1004 TGAVLVSQEPSKVILYRG 1021
TG ++ + VILYRG
Sbjct: 434 TGGTIILRNKDFVILYRG 451
>gi|326499694|dbj|BAJ86158.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 730
Score = 384 bits (987), Expect = e-103, Method: Compositional matrix adjust.
Identities = 235/593 (39%), Positives = 326/593 (54%), Gaps = 41/593 (6%)
Query: 167 EKEKEVPTLAELKLSGKELRRLRTLGIGLRKK-LKIGKAGITEGIVNGIHERWRHA-EVV 224
+K+ PT AE L EL RLR G L+ KAG+T+ +V + W E+
Sbjct: 141 QKKARQPTPAERLLDPAELDRLRRAARGTGDGWLRAKKAGVTDEVVEDVCRVWSGGQELA 200
Query: 225 KIVCEDLCRLNMKRTHDSLERKTGGLVVWRSGSKIILYRGADYKYPYFLADESSTD---- 280
+ + R M R + LE K+GGLVVW G +YRG+ Y +S D
Sbjct: 201 AVRVVEPLRRCMDRAREILEIKSGGLVVWTKGDVHFVYRGSSYLENIKHRQKSIADIQRV 260
Query: 281 GASSDDLPNQLVDDEGLDETKTHSSGADSAKPSGQSPTNKKVQQTLIHSVGSPDKLRYQL 340
P E E T+ + G P+ +H+ Y+
Sbjct: 261 PLEKCTAPGPQWKHESNAEPSTNHNDDAHGVFRGIDPS------LAVHA--------YEE 306
Query: 341 PGEAELVE-EADRLLDGLGPRFTDWWGYDPQPVDADLLPATVPGYRRPFRLLPYGVQPKL 399
P E L E E +RLLD LGPRF DWW P PVDADLLP VPG++ PFR P GV+P L
Sbjct: 307 PVEGTLYEREVNRLLDSLGPRFVDWWWNTPLPVDADLLPEVVPGFKTPFRQCPPGVRPTL 366
Query: 400 TNDEMTTLRRLGRPLPCHFALGRNRNLQGLAAAIVKLWEKCEIAKIAVKRGAQNTNSEMM 459
++E+T LR+L RPLP HFALGRN LQGLAAA++KLWEK IAKIAVK G QNTN+E M
Sbjct: 367 ADEELTYLRKLARPLPTHFALGRNTRLQGLAAAVLKLWEKSLIAKIAVKVGIQNTNNEQM 426
Query: 460 AQELKRLTGGTLLSRDREFIVFYRGKDFLPPAASSAIEERRKHEFSTS----------ND 509
A LK LTGGT++ R+++F++ YRGKDFLP ++ E+ ++ D
Sbjct: 427 AWNLKHLTGGTIILRNKDFVILYRGKDFLPGGVKQSVIEQEARVYAQQVKEEEARLMVMD 486
Query: 510 S--------KEEPELGNRHDNSGDNTQDEFGCTNDQKSTMHSEQKERRSAEVAIRRTNIR 561
S EE +G+ + D + T + + + E+ E ++ R
Sbjct: 487 SLKMFAGLPSEESSVGSFREYQ-DFQLNHVQETTENNMALIELEAEKHRLEKELKDQERR 545
Query: 562 LSRVLEKKAEAEKLLAELEEE-RPEQYEVDKEGITEEERYMLRKVGLRMKAFLLMGRRGV 620
L + +K + + LA+L P + DKE +TEEER + RK+GL+M +L+GRRG+
Sbjct: 546 LFILTKKIERSNEALAKLHNSWNPSEQSADKELLTEEERMIFRKIGLKMDEHVLLGRRGI 605
Query: 621 FDGTVENMHLHWKHRELVKIISKQRKIEAALQEARTLEVESGGILVAVERVNKGYAIILY 680
FDG +E +H HWKH+E+VK+I+KQ + + LEVE+GG+L+A +++ +AIILY
Sbjct: 606 FDGVIEEIHQHWKHKEIVKVITKQNQAYQITYTSMLLEVETGGMLIATQKLTNSHAIILY 665
Query: 681 RGKNYERPACLRPKTLLTKREAMKRSLEAQRRQSLKLHVLELTRNIEKLKLQL 733
RGKNY RP P L TKREA++RS+E QRR S+K +V E ++IE L+ +L
Sbjct: 666 RGKNYHRPTKSSPSNLRTKREALRRSVEVQRRGSMKYYVWERHKSIEDLQWRL 718
Score = 40.4 bits (93), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 43/78 (55%), Gaps = 3/78 (3%)
Query: 947 LRMKKRPV---LAVGRSNIVTGVAKAIKAHFEKYPLAIVNVKGRAKGTSVQEVVAKLEEA 1003
LR RP+ A+GR+ + G+A A+ +EK +A + VK + T+ +++ L+
Sbjct: 374 LRKLARPLPTHFALGRNTRLQGLAAAVLKLWEKSLIAKIAVKVGIQNTNNEQMAWNLKHL 433
Query: 1004 TGAVLVSQEPSKVILYRG 1021
TG ++ + VILYRG
Sbjct: 434 TGGTIILRNKDFVILYRG 451
>gi|356567264|ref|XP_003551841.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Glycine max]
Length = 712
Score = 380 bits (976), Expect = e-102, Method: Compositional matrix adjust.
Identities = 246/631 (38%), Positives = 353/631 (55%), Gaps = 76/631 (12%)
Query: 138 GTGAAIVRYNQLNKEVGRQKWLAKNSKMN----EKEKEVPTLAELKLSGKELRRLRTLGI 193
G I++ N+ + GR W K+ K ++EK V T AEL L LRRLR
Sbjct: 127 GGYLEILKENEEVRSKGRMPW-EKDEKFGFVKVKREKAV-TAAELTLDKALLRRLRNEAA 184
Query: 194 GLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCE-DLCRLNMKRTHDSLERKTGGLVV 252
+R +K+ KAG+T+ +V+ I WR E+ I + LCR NM R + +E KTGGLVV
Sbjct: 185 RMRTWIKVKKAGVTQDVVDQIKRTWRRNELAMIKFDIPLCR-NMDRAREIVETKTGGLVV 243
Query: 253 WRSGSKIILYRGADYKYPYFLADESSTDGASSDDLPNQLVDDEGLDETKTHSSGADSAKP 312
+++YRG ++ S ++ N D + DS
Sbjct: 244 LSKKDFLVVYRGCNH---------------HSSEMLNWNADHK------------DSI-- 274
Query: 313 SGQSPTNKKVQQTLIHSVGSPDKLRYQLPGEAELVEEADRLLDGLGPRFTDWWGYDPQPV 372
S G D + QL + E +RLLDGLGPRF DWW + P PV
Sbjct: 275 ----------------STGIQD-VNCQLVNGSLYERETERLLDGLGPRFIDWWMHKPLPV 317
Query: 373 DADLLPATVPGYRRPFRLLPYGVQPKLTNDEMTTLRRLGRPLPCHFALGRNRNLQGLAAA 432
DADLLP VPG++ PFRL P KLT+ E+T R+L + LP HF LGRN+ L+GLA+A
Sbjct: 318 DADLLPEEVPGFQPPFRLCPPHSSAKLTDYELTYFRKLAQSLPTHFVLGRNKGLKGLASA 377
Query: 433 IVKLWEKCEIAKIAVKRGAQNTNSEMMAQELKRLTGGTLLSRDREFIVFYRGKDFLPPAA 492
I+KLWEK IAKIA+K G NT++EMMA ELK LTGG LL R++ +I+ YRG DFLP +
Sbjct: 378 ILKLWEKSLIAKIAIKYGIPNTDNEMMANELKCLTGGVLLLRNKFYILLYRGNDFLPRSV 437
Query: 493 SSAIEERRKHEFSTSNDSKEEPELGNRH----------DNSGDNTQDEFGCTN----DQK 538
+S + E+R+ E + +E + D S T EF D K
Sbjct: 438 ASLV-EKRELELKSRQLHEEVARMKAIQAFSPIDEVPLDTSTSGTLTEFRKIQTKLEDTK 496
Query: 539 STMHSEQKERRSAEVAIRRTNI----RLSRVLEKKAE-AEKLLAELEEE-RPEQYEVDKE 592
S ++ + + AE+ + R + +L KK + +E+ L++L P + + D E
Sbjct: 497 S-VNVDSNIQLEAEICRLEKELKEEQRRAFILNKKIKRSERELSKLNAAWTPSEQDTDLE 555
Query: 593 GITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVENMHLHWKHRELVKIISKQRKIEAALQ 652
+T+EER RK+GL+M++ LL+GRRG+FDG +E +H HWKHRE+VK+I+ Q+ +
Sbjct: 556 IMTDEERECFRKIGLKMQSSLLLGRRGIFDGVLEGLHQHWKHREVVKVITMQKLFSQVIN 615
Query: 653 EARTLEVESGGILVAVERVNKGYAIILYRGKNYERPACLRPKTLLTKREAMKRSLEAQRR 712
A+ LE ESGGILV+V+++ +G+AII+YRGKNY+RP+ K LLTKREA++RSLE QR
Sbjct: 616 TAKVLETESGGILVSVDKLKEGHAIIIYRGKNYKRPSIKLAKNLLTKREALRRSLEMQRI 675
Query: 713 QSLKLHVLELTRNIEKLKLQLVKDKEANSLE 743
S+K + + I +L+++L ++ +E
Sbjct: 676 GSMKFFAHQREQAISELEVKLADLQQKKEIE 706
>gi|297803062|ref|XP_002869415.1| hypothetical protein ARALYDRAFT_328739 [Arabidopsis lyrata subsp.
lyrata]
gi|297315251|gb|EFH45674.1| hypothetical protein ARALYDRAFT_328739 [Arabidopsis lyrata subsp.
lyrata]
Length = 775
Score = 374 bits (961), Expect = e-100, Method: Compositional matrix adjust.
Identities = 210/417 (50%), Positives = 273/417 (65%), Gaps = 24/417 (5%)
Query: 344 AELVEEADRLLDGLGPRFTDWWGYDPQPVDADLLPATVPGYRRPFRLLPYGVQPKLTNDE 403
+EL E D LLD LGPRF DW G P PVDADLLP V GYR PFR+LP GV+P L+N E
Sbjct: 334 SELCELND-LLDELGPRFHDWTGCAPFPVDADLLPGYVEGYRCPFRILPQGVKPCLSNTE 392
Query: 404 MTTLRRLGRPLPCHFALGRNRNLQGLAAAIVKLWEKCEIAKIAVKRGAQNTNSEMMAQEL 463
MT +RRL R P HFALGR+R LQGLA A+VKLW K IAKIA+KRG +NT +E MA+EL
Sbjct: 393 MTEMRRLARTSPPHFALGRSRELQGLAKAMVKLWAKSAIAKIAIKRGVENTRNERMAEEL 452
Query: 464 KRLTGGTLLSRDREFIVFYRGKDFLPPAASSAIEERRKHEFSTSNDSKEEP--ELGNRH- 520
KRLT G L+SR++E+IVFYRG DF+PPA + A+ ER+K E + +KE+ E+ +
Sbjct: 453 KRLTRGVLVSRNKEYIVFYRGNDFMPPAVAEALTERQK-EITEVLQTKEDQVREMASTRV 511
Query: 521 ----DNSGDNTQDEFGCTND----------QKSTMHSEQKERRSAEVA----IRRTNIRL 562
TQ G + S++ E+ +R SA + IR +RL
Sbjct: 512 TLTSQAKSPKTQLLAGTLAETIAASSRWAPDASSVDIEELKRESASIKRAALIRDLELRL 571
Query: 563 SRVLEKKAEAEKLLAELEEE-RPEQYEVDKEGITEEERYMLRKVGLRMKAFLLMGRRGVF 621
+K AE+ LA+++++ P + D E ITEEER + RK+GL M FLL+GRR V+
Sbjct: 572 LYGKQKLRRAERDLAKVQKDLDPSELPTDSETITEEERLLYRKIGLSMDPFLLLGRREVY 631
Query: 622 DGTVENMHLHWKHRELVKIISKQRKIEAALQEARTLEVESGGILVAVERVNKGYAIILYR 681
DGT+ENMHLHWKHRELVK+I + + + A +LE ESGG+LV+V++ KGY+IILYR
Sbjct: 632 DGTIENMHLHWKHRELVKVIVRGKSLPQVKHIAISLEAESGGVLVSVDKTMKGYSIILYR 691
Query: 682 GKNYERPACLRPKTLLTKREAMKRSLEAQRRQSLKLHVLELTRNIEKLKLQLVKDKE 738
GKNY+ P LRP LLT+++A RS+E QRR++LK HV +L IE LK D+E
Sbjct: 692 GKNYQMPFRLRPSNLLTRKKAFARSIELQRREALKYHVADLEERIELLKTGQDDDRE 748
Score = 68.2 bits (165), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/87 (41%), Positives = 52/87 (59%), Gaps = 8/87 (9%)
Query: 158 WLAKNSKMNEKEKEVPTLAELKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHER 217
W + S E E+ VP ELRRLR++ + + +++K+G AGIT+ +V IHE+
Sbjct: 226 WKTRRSNTAEAERVVPE--------HELRRLRSVALRMVERVKVGSAGITQVLVQAIHEK 277
Query: 218 WRHAEVVKIVCEDLCRLNMKRTHDSLE 244
W EVVK+ + LNMKRTH+ LE
Sbjct: 278 WEVDEVVKLKFGEPFSLNMKRTHEVLE 304
Score = 61.6 bits (148), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 74/142 (52%), Gaps = 10/142 (7%)
Query: 141 AAIVRYNQLNKEVGRQKWLAKNSKMNEKEK-----EVPTLAELKLSGKELRRLRTLGIGL 195
AA++R +L G+QK + + +K E+PT +E ++ +E R +G+ +
Sbjct: 561 AALIRDLELRLLYGKQKLRRAERDLAKVQKDLDPSELPTDSE-TITEEERLLYRKIGLSM 619
Query: 196 RKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRTHDSLERKTGGLVV--- 252
L +G+ + +G + +H W+H E+VK++ +K SLE ++GG++V
Sbjct: 620 DPFLLLGRREVYDGTIENMHLHWKHRELVKVIVRGKSLPQVKHIAISLEAESGGVLVSVD 679
Query: 253 -WRSGSKIILYRGADYKYPYFL 273
G IILYRG +Y+ P+ L
Sbjct: 680 KTMKGYSIILYRGKNYQMPFRL 701
Score = 47.4 bits (111), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 61/234 (26%), Positives = 104/234 (44%), Gaps = 33/234 (14%)
Query: 802 PPAI------QQDKQTESLTHNGISINEIES-KSSLKSVSKESQLNMIADFFAEGVASGT 854
PPA+ +Q + TE L + E+ S + +L S +K + ++A AE +A+ +
Sbjct: 478 PPAVAEALTERQKEITEVLQTKEDQVREMASTRVTLTSQAKSPKTQLLAGTLAETIAASS 537
Query: 855 SSCPDNS---MQEVMEYNTIVDAEQCSSDNEPRESSIESAKSRSSENEPIEQSFELAKGR 911
PD S ++E+ + + D E R K R +E + LAK +
Sbjct: 538 RWAPDASSVDIEELKRESASIKRAALIRDLELR-LLYGKQKLRRAERD-------LAKVQ 589
Query: 912 SGLSTPIGTGNVWNENNSRAIQLSNRDRLLLRKQALRMKKRPVLAVGRSNIVTGVAKAIK 971
L +E + + ++ +RLL RK L M P L +GR + G + +
Sbjct: 590 KDLDP--------SELPTDSETITEEERLLYRKIGLSMD--PFLLLGRREVYDGTIENMH 639
Query: 972 AHFEKYPLAIVNVKGRAKGTSVQEVVAKLEEATGAVLVSQEPS----KVILYRG 1021
H++ L V V+G++ V+ + LE +G VLVS + + +ILYRG
Sbjct: 640 LHWKHRELVKVIVRGKSL-PQVKHIAISLEAESGGVLVSVDKTMKGYSIILYRG 692
Score = 41.6 bits (96), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 38/69 (55%)
Query: 953 PVLAVGRSNIVTGVAKAIKAHFEKYPLAIVNVKGRAKGTSVQEVVAKLEEATGAVLVSQE 1012
P A+GRS + G+AKA+ + K +A + +K + T + + +L+ T VLVS+
Sbjct: 405 PHFALGRSRELQGLAKAMVKLWAKSAIAKIAIKRGVENTRNERMAEELKRLTRGVLVSRN 464
Query: 1013 PSKVILYRG 1021
++ YRG
Sbjct: 465 KEYIVFYRG 473
>gi|449441730|ref|XP_004138635.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Cucumis sativus]
Length = 760
Score = 372 bits (956), Expect = e-100, Method: Compositional matrix adjust.
Identities = 238/595 (40%), Positives = 322/595 (54%), Gaps = 38/595 (6%)
Query: 169 EKEVPTLAELKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVC 228
+K+ T AEL L L RL+ + K +K+ K G+T+ +VN I W E+ +
Sbjct: 178 KKKTVTSAELNLDRVLLERLKGEASKMEKWVKVNKVGVTQDVVNQIQFMWERNELAMLKF 237
Query: 229 EDLCRLNMKRTHDSLERKTGGLVVWRSGSKIILYRGADYKYPYFLADESSTDGASSDDLP 288
+ NM R + +E KTGG+VVW + +++YRG +Y P L + S P
Sbjct: 238 DVPLSRNMDRAREIVEMKTGGMVVWSKKNALVVYRGCNY--PLNLKHSTKKQVHISPQNP 295
Query: 289 NQLVDDEGLDETKTHSSGADSAKPSGQSPTNKKVQQTLIHSVGSPDKLRYQLPGEAELVE 348
++ D + + SG + + + LI + L+ P L E
Sbjct: 296 VKVETDTHFSLSGHYESGLNRSINDNDGEWEEASSFFLIRH----ENLQ---PLSGSLYE 348
Query: 349 -EADRLLDGLGPRFTDWWGYDPQPVDADLLPATVPGYRRPFRLLPYGVQPKLTNDEMTTL 407
E DRLLD LGPRF DWW + P PVDAD+LP VPGY PFR P + LT+ + L
Sbjct: 349 RETDRLLDDLGPRFIDWWMHKPLPVDADMLPEVVPGYMPPFRRCPPYTKQNLTDAGLQHL 408
Query: 408 RRLGRPLPCHFALGRNRNLQGLAAAIVKLWEKCEIAKIAVKRGAQNTNSEMMAQELKRLT 467
R+L LP HF LGRNR LQGLAA+I+KLWEK IAKIA+K G NT++E MA ELK LT
Sbjct: 409 RKLAHSLPTHFVLGRNRKLQGLAASILKLWEKSMIAKIALKWGVPNTDNEQMALELKNLT 468
Query: 468 GGTLLSRDREFIVFYRGKDFLPPAASSAIEER-------RKHE------------FSTSN 508
GGTLL R++ I+ YRG DFLP + +I +R + HE F T N
Sbjct: 469 GGTLLLRNKFVIILYRGNDFLPVGVADSIIQREVELQRWQLHEENSRLKASEFFCFDTEN 528
Query: 509 DSKEEPELGNRHDNSGDNTQDEFGCTNDQKSTMHSEQ---KERRSAEVAIRRTNIRLSRV 565
+E + G D E T +S + +E K R + RR I +V
Sbjct: 529 -MEERGKAGTLSDFKDITVGYEDLSTGSTESRLQAEAEKGKIIRGLRMQERRLKILNFKV 587
Query: 566 LEKKAEAEKLLAELEEERPEQYEVDKEGITEEERYMLRKVGLRMKAFLLMGRRGVFDGTV 625
+ E KL A P + D+E IT EER RK+GL+M + L +GRRGVFDG +
Sbjct: 588 EKSTKELTKLNASWRRVEP---DADQELITNEERICFRKMGLKMDSCLTLGRRGVFDGVI 644
Query: 626 ENMHLHWKHRELVKIISKQRKIEAALQEARTLEVESGGILVAVERVNKGYAIILYRGKNY 685
E +H HWKHRE+VK+I+ QR A+ LE ESGGILV+V+++ +GYAII++RGKNY
Sbjct: 645 EGLHQHWKHREVVKVITMQRAFNQVNYTAKLLEAESGGILVSVDKLKEGYAIIIFRGKNY 704
Query: 686 ERPACLRPKTLLTKREAMKRSLEAQRRQSLKLHVLELTRNIEKLKLQL--VKDKE 738
+RP K LLTKR+A+ RSLE QR SLK + + I +L+ +L V+D E
Sbjct: 705 KRPLHSVSKNLLTKRKALSRSLEMQRIGSLKFFANQRQQKIYELQHELENVRDSE 759
>gi|255551422|ref|XP_002516757.1| conserved hypothetical protein [Ricinus communis]
gi|223544130|gb|EEF45655.1| conserved hypothetical protein [Ricinus communis]
Length = 742
Score = 370 bits (951), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 229/576 (39%), Positives = 323/576 (56%), Gaps = 69/576 (11%)
Query: 189 RTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCE-DLCRLNMKRTHDSLERKT 247
RT +RK +K+ KAG+T+ +V+ I WR+ E+ + + LCR NM R + +E KT
Sbjct: 207 RTEASKMRKWVKVMKAGVTQSVVDQIRYAWRNNELAMVKFDLPLCR-NMDRAREIVELKT 265
Query: 248 GGLVVWRSGSKIILYRGADYKYPYFLADESSTDGASSDDLPNQLVDDEGLDETKTHSS-- 305
GGLVVW +++YRG +Y T + + ++ +G +E S
Sbjct: 266 GGLVVWTRKDSLVIYRGCNYHL---------TKSSHVSTMDEKIGSKDGEEEYIPTSIFI 316
Query: 306 GADSAKPSGQSPTNKKVQQTLIHSVGSPDKLRYQLPGEAELVEEADRLLDGLGPRFTDWW 365
G D+ P+ + +L E DRLLDGLGPRF DWW
Sbjct: 317 GDDANTPT--------INGSLFE-------------------RETDRLLDGLGPRFVDWW 349
Query: 366 GYDPQPVDADLLPATVPGYRRPFRLLPYGVQPKLTNDEMTTLRRLGRPLPCHFALGRNRN 425
P PVDADLLP V G+ P R + + KL +DE+T LR+L LP HF LGRNR
Sbjct: 350 MRKPLPVDADLLPEVVAGFMPPSRF--HYARAKLKDDELTYLRKLAYALPTHFVLGRNRR 407
Query: 426 LQGLAAAIVKLWEKCEIAKIAVKRGAQNTNSEMMAQELKRLTGGTLLSRDREFIVFYRGK 485
LQGLAAAI+KLWE+ IAKIAVK G NT++E MA ELK LTGG LL R++ FI+ +RGK
Sbjct: 408 LQGLAAAILKLWERSLIAKIAVKWGIPNTDNEQMANELKHLTGGVLLLRNKFFIILFRGK 467
Query: 486 DFLPPAASSAIEERRKHEFSTSNDSKEEPELGNRHDNSGDN----------TQDEFGCTN 535
DFLP + + +R++E ++E L + D+ T +EF
Sbjct: 468 DFLPCQVADLVV-KRENELKICQLNEEGARLKAIETSFTDDELVVKATKIGTLNEF---Q 523
Query: 536 DQKSTMHSEQKERRSAEVAI--------RRTNIRLSRVLEKKAEAEKLLAELEEER---- 583
D + K R +++ + R I+ ++L K++ EK EL +
Sbjct: 524 DIQVRFKELAKGYRDSKLQLEAEKEKLERELRIQEHKLLILKSKIEKSARELSKLNSAWA 583
Query: 584 PEQYEVDKEGITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVENMHLHWKHRELVKIISK 643
P + D E +TEEER LRK+GL+M++ LL+GRRGVFDG +E +H HWKHRE+VK+IS
Sbjct: 584 PADQDADLEMMTEEERECLRKIGLKMRSSLLLGRRGVFDGVIEGLHQHWKHREVVKVISL 643
Query: 644 QRKIEAALQEARTLEVESGGILVAVERVNKGYAIILYRGKNYERPACLRPKTLLTKREAM 703
QR ++ A+ LE E+GGILV+++++ +G+AII+YRGKNY RP L LLTKR+A+
Sbjct: 644 QRMFAQVIRTAKFLEAETGGILVSIDKLKEGHAIIIYRGKNYRRPQRL-LNNLLTKRKAL 702
Query: 704 KRSLEAQRRQSLKLHVLELTRNIEKLKLQLVKDKEA 739
RSLE QR SL+ + +I +LK QL + +E+
Sbjct: 703 CRSLEMQRIGSLRFFAYQRQHSIRELKFQLAQLQES 738
Score = 73.9 bits (180), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 66/113 (58%), Gaps = 5/113 (4%)
Query: 163 SKMNEKEKEVPTLAELKLSGKELRR-LRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHA 221
SK+N A+L++ +E R LR +G+ +R L +G+ G+ +G++ G+H+ W+H
Sbjct: 576 SKLNSAWAPADQDADLEMMTEEERECLRKIGLKMRSSLLLGRRGVFDGVIEGLHQHWKHR 635
Query: 222 EVVKIVCEDLCRLNMKRTHDSLERKTGGLVV----WRSGSKIILYRGADYKYP 270
EVVK++ + RT LE +TGG++V + G II+YRG +Y+ P
Sbjct: 636 EVVKVISLQRMFAQVIRTAKFLEAETGGILVSIDKLKEGHAIIIYRGKNYRRP 688
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 78/342 (22%), Positives = 137/342 (40%), Gaps = 57/342 (16%)
Query: 176 AELKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCE-DLCRL 234
A KL EL LR L L +G+ +G+ I + W + + KI + +
Sbjct: 377 ARAKLKDDELTYLRKLAYALPTHFVLGRNRRLQGLAAAILKLWERSLIAKIAVKWGIPNT 436
Query: 235 NMKRTHDSLERKTGGLVVWRSGSKIILYRGADYKYPYFLAD------------ESSTDGA 282
+ ++ + L+ TGG+++ R+ IIL+RG D+ P +AD + + +GA
Sbjct: 437 DNEQMANELKHLTGGVLLLRNKFFIILFRGKDF-LPCQVADLVVKRENELKICQLNEEGA 495
Query: 283 SSDDLPNQLVDDE-GLDETKTHSSGADSAKPSGQSPTNKKVQQTLIHSVGSPDKLRYQL- 340
+ DDE + TK + K + + + +KL +L
Sbjct: 496 RLKAIETSFTDDELVVKATKIGTLNEFQDIQVRFKELAKGYRDSKLQLEAEKEKLERELR 555
Query: 341 PGEAEL------VEEADRLLDGLGPRFTDWWGYDPQPVDADLLPATVPGYRRPFRLLPYG 394
E +L +E++ R L L + P DADL
Sbjct: 556 IQEHKLLILKSKIEKSARELSKLNS------AWAPADQDADL------------------ 591
Query: 395 VQPKLTNDEMTTLRRLGRPLPCHFALGRNRNLQGLAAAIVKLWEKCEIAKIAVKRGAQNT 454
+T +E LR++G + LGR G+ + + W+ E+ K+ Q
Sbjct: 592 --EMMTEEERECLRKIGLKMRSSLLLGRRGVFDGVIEGLHQHWKHREVVKVI---SLQRM 646
Query: 455 NSEMM--AQELKRLTGGTLLSRDR----EFIVFYRGKDFLPP 490
++++ A+ L+ TGG L+S D+ I+ YRGK++ P
Sbjct: 647 FAQVIRTAKFLEAETGGILVSIDKLKEGHAIIIYRGKNYRRP 688
>gi|449490080|ref|XP_004158502.1| PREDICTED: LOW QUALITY PROTEIN: chloroplastic group IIA intron
splicing facilitator CRS1, chloroplastic-like [Cucumis
sativus]
Length = 760
Score = 370 bits (950), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 236/595 (39%), Positives = 322/595 (54%), Gaps = 38/595 (6%)
Query: 169 EKEVPTLAELKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVC 228
+K+ T AEL L L RL+ + K +K+ K G+T+ +VN I W E+ +
Sbjct: 178 KKKTVTSAELNLDRVLLERLKGEASKMEKWVKVNKVGVTQDVVNQIQFMWERNELAMLKF 237
Query: 229 EDLCRLNMKRTHDSLERKTGGLVVWRSGSKIILYRGADYKYPYFLADESSTDGASSDDLP 288
+ NM R + +E KTGG+VVW + +++YRG +Y P L + S P
Sbjct: 238 DVPLSRNMDRAREIVEMKTGGMVVWSKKNALVIYRGCNY--PLNLKHSTKKQVHISPQNP 295
Query: 289 NQLVDDEGLDETKTHSSGADSAKPSGQSPTNKKVQQTLIHSVGSPDKLRYQLPGEAELVE 348
++ D + + SG + + + LI + L+ P L E
Sbjct: 296 VKVETDTHFSLSGHYESGLNRSINDNDGEWEEASSFFLIRH----ENLQ---PLSGSLYE 348
Query: 349 -EADRLLDGLGPRFTDWWGYDPQPVDADLLPATVPGYRRPFRLLPYGVQPKLTNDEMTTL 407
E DRLLD LGPRF DWW + P PVDAD+L VPGY PFR P + LT+ + L
Sbjct: 349 RETDRLLDDLGPRFIDWWMHKPLPVDADMLQEVVPGYMPPFRRCPPYTKQNLTDAGLQHL 408
Query: 408 RRLGRPLPCHFALGRNRNLQGLAAAIVKLWEKCEIAKIAVKRGAQNTNSEMMAQELKRLT 467
R+L LP HF LGRNR LQGLAA+I+KLWEK IAKIA+K G NT++E MA ELK LT
Sbjct: 409 RKLAHSLPTHFVLGRNRKLQGLAASILKLWEKSMIAKIALKWGVPNTDNEQMALELKNLT 468
Query: 468 GGTLLSRDREFIVFYRGKDFLPPAASSAIEER-------RKHE------------FSTSN 508
GGTLL R++ I+ YRG DFLP + +I +R + HE F T N
Sbjct: 469 GGTLLLRNKFVIILYRGNDFLPVGVADSIIQREVELQRWQLHEENSRLKASEFFCFDTEN 528
Query: 509 DSKEEPELGNRHDNSGDNTQDEFGCTNDQKSTMHSEQKER---RSAEVAIRRTNIRLSRV 565
+E + G D E T +S + +E ++ R + RR I +V
Sbjct: 529 -MEERGKAGTLSDFKDITVGYEDLSTGSTESRLQAEAEKXKIIRGLRMQERRLKILNFKV 587
Query: 566 LEKKAEAEKLLAELEEERPEQYEVDKEGITEEERYMLRKVGLRMKAFLLMGRRGVFDGTV 625
+ E KL A P + D+E IT EER RK+GL+M + L +GRRGVFDG +
Sbjct: 588 EKSTKELTKLNASWRRVEP---DADQELITNEERICFRKMGLKMDSCLTLGRRGVFDGVI 644
Query: 626 ENMHLHWKHRELVKIISKQRKIEAALQEARTLEVESGGILVAVERVNKGYAIILYRGKNY 685
E +H HWKHRE+VK+I+ QR A+ LE ESGGILV+V+++ +GYAII++RGKNY
Sbjct: 645 EGLHQHWKHREVVKVITMQRAFNQVNYTAKLLEAESGGILVSVDKLKEGYAIIIFRGKNY 704
Query: 686 ERPACLRPKTLLTKREAMKRSLEAQRRQSLKLHVLELTRNIEKLKLQL--VKDKE 738
+RP K LLTKR+A+ RSLE QR SLK + + I +L+ +L V+D E
Sbjct: 705 KRPLHSVSKNLLTKRKALSRSLEMQRIGSLKFFANQRQQKIYELQHELEKVRDSE 759
>gi|296087258|emb|CBI33632.3| unnamed protein product [Vitis vinifera]
Length = 529
Score = 367 bits (943), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 213/446 (47%), Positives = 275/446 (61%), Gaps = 38/446 (8%)
Query: 322 VQQTLIHSVGSPDKLRYQ-LPGEAELVE-----------EADRLLDGLGPRFTDWWGYDP 369
V++TL+ +G P + Q + E+V+ EADRLLDGLGPRF DWW P
Sbjct: 34 VRKTLLLFIGDPIISQLQNIFKRCEMVDSQPVNGSLYEREADRLLDGLGPRFIDWWRPKP 93
Query: 370 QPVDADLLPATVPGYRRPFRLLPYGVQPKLTNDEMTTLRRLGRPLPCHFALGRNRNLQGL 429
PVDADLLP +PG+R PFRL P + KLT+DE+T LR+L LP HF LGRNR LQGL
Sbjct: 94 LPVDADLLPEVLPGFRPPFRLSPPQTRSKLTDDELTYLRKLAYALPTHFVLGRNRKLQGL 153
Query: 430 AAAIVKLWEKCEIAKIAVKRGAQNTNSEMMAQELKRLTGGTLLSRDREFIVFYRGKDFLP 489
AAAI+KLWEK I KIA+K G NT +E MA ELK LTGG LL R++ FI+ YRGKDFLP
Sbjct: 154 AAAILKLWEKSLIVKIAIKWGIPNTKNEQMANELKCLTGGVLLLRNKFFIILYRGKDFLP 213
Query: 490 PAASSAIEERRKHEFSTSNDSKEEPELG------------NRHDNSG-----DNTQDEFG 532
++ I E R+ EF +E+ L +G N + EF
Sbjct: 214 CRVANLIVE-REMEFKGCQIREEDARLKAIETSFVTDKPLANTSTTGTLSEFQNIETEFR 272
Query: 533 CTNDQKSTMHSE---QKERRSAEVAIRRTNIR-LSRVLEKKAEAEKLLAELEEE-RPEQY 587
D + + E +KER E+ + N+ L R +E+ A K+LA+L RP +
Sbjct: 273 GLKDGNTEIEVELEAEKERLEKELKKQERNLFILKRKIERSA---KVLAKLNSAWRPADH 329
Query: 588 EVDKEGITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVENMHLHWKHRELVKIISKQRKI 647
+ DKE ITEEER RK+G +M + LL+GRRGVFDG +E +H HWKHRE+VK+I+ QR
Sbjct: 330 DADKEMITEEERECFRKIGQKMDSSLLLGRRGVFDGVIEGLHQHWKHREIVKVITMQRSF 389
Query: 648 EAALQEARTLEVESGGILVAVERVNKGYAIILYRGKNYERPACLRPKTLLTKREAMKRSL 707
L A+ LE ESGG+LV+++++ +G+AII+YRGKNY RP L PK LLTKREA+ RSL
Sbjct: 390 SQVLYTAKLLESESGGVLVSIDKLKEGHAIIIYRGKNYRRPIKLVPKNLLTKREALNRSL 449
Query: 708 EAQRRQSLKLHVLELTRNIEKLKLQL 733
E QR SLK + + I LKL+L
Sbjct: 450 EMQRIGSLKFFAYQRQQAISDLKLKL 475
Score = 60.5 bits (145), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 50/87 (57%), Gaps = 4/87 (4%)
Query: 188 LRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRTHDSLERKT 247
R +G + L +G+ G+ +G++ G+H+ W+H E+VK++ + T LE ++
Sbjct: 344 FRKIGQKMDSSLLLGRRGVFDGVIEGLHQHWKHREIVKVITMQRSFSQVLYTAKLLESES 403
Query: 248 GGLVV----WRSGSKIILYRGADYKYP 270
GG++V + G II+YRG +Y+ P
Sbjct: 404 GGVLVSIDKLKEGHAIIIYRGKNYRRP 430
Score = 42.0 bits (97), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 179 KLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCE-DLCRLNMK 237
KL+ EL LR L L +G+ +G+ I + W + +VKI + + +
Sbjct: 122 KLTDDELTYLRKLAYALPTHFVLGRNRKLQGLAAAILKLWEKSLIVKIAIKWGIPNTKNE 181
Query: 238 RTHDSLERKTGGLVVWRSGSKIILYRGADY 267
+ + L+ TGG+++ R+ IILYRG D+
Sbjct: 182 QMANELKCLTGGVLLLRNKFFIILYRGKDF 211
>gi|218201029|gb|EEC83456.1| hypothetical protein OsI_28955 [Oryza sativa Indica Group]
Length = 514
Score = 363 bits (933), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 218/517 (42%), Positives = 295/517 (57%), Gaps = 42/517 (8%)
Query: 236 MKRTHDSLERKTGGLVVWRSGSKIILYRGADYKYPYFLADESSTDGASSDDLPNQLVDDE 295
M R + LE KTGGLVVW G +YRG+ Y + D N +E
Sbjct: 1 MDRAREILEIKTGGLVVWTRGGIHFVYRGSSY----------LENAKQHRDFVNY---NE 47
Query: 296 GLDETKTHSSGADSAKPSGQSPTNKKVQQTLIHSVGSPDKLRYQLPGEAELVE-EADRLL 354
L S S P+ Q K +TL + D P + L E E +RLL
Sbjct: 48 EL-------SPVTSNNPTSQGKYWSK-DETLTNDNDEADDKD-DKPIKGTLYEREVNRLL 98
Query: 355 DGLGPRFTDWWGYDPQPVDADLLPATVPGYRRPFRLLPYGVQPKLTNDEMTTLRRLGRPL 414
D LGPRF DWW P PVDADLLP VP ++ PFR P GV+P L ++E+T LR+ RPL
Sbjct: 99 DSLGPRFIDWWWNTPLPVDADLLPEVVPDFKTPFRQCPPGVRPTLADEELTYLRKHARPL 158
Query: 415 PCHFALGRNRNLQGLAAAIVKLWEKCEIAKIAVKRGAQNTNSEMMAQELKRLTGGTLLSR 474
P HF LGRN LQGLAAAI+KLWEK IAK+AVK G QN+N E MA+ LKRLTGGT++ R
Sbjct: 159 PTHFVLGRNTKLQGLAAAILKLWEKSLIAKVAVKVGIQNSNHEQMARNLKRLTGGTVILR 218
Query: 475 DREFIVFYRGKDFLPPAASSAIEERRKHEFSTSNDSKEEPEL----------GNRHDNSG 524
++++I+ YRGKDFLP + ++ E ++ + +EE L G + S
Sbjct: 219 NKDYIIIYRGKDFLPGGVAESVIE-QESQVHDQQAKEEEARLKMADSLQMIVGLSSERSY 277
Query: 525 DNTQDEFGCTNDQKSTMHSEQKERRSAEVAIRR-------TNIRLSRVLEKKAEAEKLLA 577
T E+ +D + +E R E R RLS + +K + ++LA
Sbjct: 278 VGTFREYQDFHDSHARRTTENNFRIQLEAKKHRLEKELKDQEWRLSMLTKKIERSNQVLA 337
Query: 578 ELEEE-RPEQYEVDKEGITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVENMHLHWKHRE 636
+L P + + D+E +TEEER + RK+GL+M +L+GRRGVF+G +E +H HWKH+E
Sbjct: 338 KLHSSWSPSKKDGDRELLTEEERRIFRKIGLKMDEHVLLGRRGVFEGVIEEIHQHWKHKE 397
Query: 637 LVKIISKQRKIEAALQEARTLEVESGGILVAVERVNKGYAIILYRGKNYERPACLRPKTL 696
+VK+I+KQ + + LEVE+GG L+A+ER +AIILYRGKNY RP P L
Sbjct: 398 VVKVITKQNQANQITYTSMMLEVETGGTLIAIERFTTSHAIILYRGKNYRRPTKSAPSNL 457
Query: 697 LTKREAMKRSLEAQRRQSLKLHVLELTRNIEKLKLQL 733
LTKREA++RS+E QRR S+K E ++I++LK +L
Sbjct: 458 LTKREALQRSIEVQRRGSMKYFAQERKKSIDELKREL 494
Score = 63.9 bits (154), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 77/143 (53%), Gaps = 21/143 (14%)
Query: 147 NQLNKEVGRQKW-LAKNSKMNEKEKEVPTLAELK--------------LSGKELRRLRTL 191
++L KE+ Q+W L+ +K E+ +V LA+L L+ +E R R +
Sbjct: 309 HRLEKELKDQEWRLSMLTKKIERSNQV--LAKLHSSWSPSKKDGDRELLTEEERRIFRKI 366
Query: 192 GIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRTHDSLERKTGGLV 251
G+ + + + +G+ G+ EG++ IH+ W+H EVVK++ + + T LE +TGG +
Sbjct: 367 GLKMDEHVLLGRRGVFEGVIEEIHQHWKHKEVVKVITKQNQANQITYTSMMLEVETGGTL 426
Query: 252 V----WRSGSKIILYRGADYKYP 270
+ + + IILYRG +Y+ P
Sbjct: 427 IAIERFTTSHAIILYRGKNYRRP 449
Score = 40.0 bits (92), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 48/96 (50%), Gaps = 6/96 (6%)
Query: 173 PTLAELKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCE-DL 231
PTLA+ +EL LR L +G+ +G+ I + W + + K+ + +
Sbjct: 141 PTLAD-----EELTYLRKHARPLPTHFVLGRNTKLQGLAAAILKLWEKSLIAKVAVKVGI 195
Query: 232 CRLNMKRTHDSLERKTGGLVVWRSGSKIILYRGADY 267
N ++ +L+R TGG V+ R+ II+YRG D+
Sbjct: 196 QNSNHEQMARNLKRLTGGTVILRNKDYIIIYRGKDF 231
>gi|125549065|gb|EAY94887.1| hypothetical protein OsI_16687 [Oryza sativa Indica Group]
Length = 893
Score = 362 bits (929), Expect = 6e-97, Method: Compositional matrix adjust.
Identities = 197/423 (46%), Positives = 277/423 (65%), Gaps = 28/423 (6%)
Query: 357 LGPRFTDWWGYDPQPVDADLLPATVPGYRRPFRLLPYGVQPKLTNDEMTTLRRLGRPLPC 416
LGPR+ DW G P PVDADLLP VPGY+ PFRLLPY V+ L N EMT LRRL R
Sbjct: 441 LGPRYKDWSGRGPIPVDADLLPGVVPGYKTPFRLLPYMVKSTLRNKEMTALRRLARQTAP 500
Query: 417 HFALGRNRNLQGLAAAIVKLWEKCEIAKIAVKRGAQNTNSEMMAQELKRLTGGTLLSRDR 476
HFALGRNR QGLA AIVKLWEK IAKIA+KRG NT ++ MA+E+++LTGG LLSR++
Sbjct: 501 HFALGRNREHQGLATAIVKLWEKSSIAKIAIKRGVPNTCNDRMAEEIRKLTGGVLLSRNK 560
Query: 477 EFIVFYRGKDFLPPAASSAIEERRKHEFSTSNDSKEEPELGNRHDNSGDNTQDE------ 530
E+IVFYRG DF+ P + E+++ + ++E EL ++ + + +
Sbjct: 561 EYIVFYRGNDFITPKVRQVLVEKQEQAITW----QDEEELARLKASASISVKPKVFKNPP 616
Query: 531 ----FGCTNDQKS----TMHSE-QKERRSAEVAIRRT----NIRLSRVLEKK--AEAEKL 575
T + KS ++++E +K+ ++ + + T N++ +L K +AEK
Sbjct: 617 VAGTLAETREAKSRWGDSINAELRKKEKNHMILTKHTSLLRNLKRKLILAKTKVIKAEKA 676
Query: 576 LAELEEE-RPEQYEVDKEGITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVENMHLHWKH 634
LA+++E P + D E +T+EER++LR++GL+MKAFL++GRR VFDGTV+NMHLHWKH
Sbjct: 677 LAKVQEFLSPAELPTDLETVTDEERFLLRRIGLKMKAFLMLGRREVFDGTVQNMHLHWKH 736
Query: 635 RELVKIISKQRKIEAALQEARTLEVESGGILVAVERVNKGYAIILYRGKNYERPACLRPK 694
RELVK++ K + A +LE ESGG+L++V++ KGYAIILYRGKNY+ P L+P+
Sbjct: 737 RELVKVLVKGKSFPQVKHIAISLEAESGGVLISVDKTTKGYAIILYRGKNYKTPQILKPR 796
Query: 695 TLLTKREAMKRSLEAQRRQSLKLHVLELTRNIEKLKLQLVKDKEANSLETIDESILPLVK 754
LL++R+A+ RS+E QRR+ L H+ L I KLK QLV+ + A E D +L V+
Sbjct: 797 NLLSRRKALARSIELQRREGLNHHISNLRDKIWKLKSQLVRMQVAG--EKPDAELLQTVE 854
Query: 755 EEI 757
++
Sbjct: 855 ADL 857
Score = 104 bits (260), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 46/93 (49%), Positives = 67/93 (72%)
Query: 175 LAELKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRL 234
LAE + ELRRLR + + +++++++G G+T+ IV IH++WR EVVK+ E L
Sbjct: 335 LAERTIPEHELRRLRDVALRMKERMRVGPGGVTQLIVESIHQKWRVEEVVKLRFEGPPSL 394
Query: 235 NMKRTHDSLERKTGGLVVWRSGSKIILYRGADY 267
NMKRTHD LE +TGG+V+WRSG ++LYRG +Y
Sbjct: 395 NMKRTHDILEERTGGIVIWRSGRSVVLYRGMNY 427
Score = 60.5 bits (145), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 60/107 (56%), Gaps = 5/107 (4%)
Query: 171 EVPTLAELKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCED 230
E+PT E ++ +E LR +G+ ++ L +G+ + +G V +H W+H E+VK++ +
Sbjct: 688 ELPTDLE-TVTDEERFLLRRIGLKMKAFLMLGRREVFDGTVQNMHLHWKHRELVKVLVKG 746
Query: 231 LCRLNMKRTHDSLERKTGGLVV----WRSGSKIILYRGADYKYPYFL 273
+K SLE ++GG+++ G IILYRG +YK P L
Sbjct: 747 KSFPQVKHIAISLEAESGGVLISVDKTTKGYAIILYRGKNYKTPQIL 793
Score = 50.1 bits (118), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 54/103 (52%), Gaps = 14/103 (13%)
Query: 588 EVDKEGITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVENMHLHWKHRELVKIISKQRKI 647
E+ + I E E LR V LRMK + +G GV VE++H W+ E+VK+ +
Sbjct: 334 ELAERTIPEHELRRLRDVALRMKERMRVGPGGVTQLIVESIHQKWRVEEVVKL-----RF 388
Query: 648 EA--ALQEART---LEVESGGILVAVERVNKGYAIILYRGKNY 685
E +L RT LE +GGI++ G +++LYRG NY
Sbjct: 389 EGPPSLNMKRTHDILEERTGGIVIW----RSGRSVVLYRGMNY 427
Score = 46.6 bits (109), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 50/92 (54%), Gaps = 7/92 (7%)
Query: 934 LSNRDRLLLRKQALRMKKRPVLAVGRSNIVTGVAKAIKAHFEKYPLAIVNVKGRAKGTSV 993
+++ +R LLR+ L+MK L +GR + G + + H++ L V VKG++ V
Sbjct: 696 VTDEERFLLRRIGLKMKA--FLMLGRREVFDGTVQNMHLHWKHRELVKVLVKGKS-FPQV 752
Query: 994 QEVVAKLEEATGAVLVSQEPS----KVILYRG 1021
+ + LE +G VL+S + + +ILYRG
Sbjct: 753 KHIAISLEAESGGVLISVDKTTKGYAIILYRG 784
Score = 42.0 bits (97), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 51/101 (50%), Gaps = 5/101 (4%)
Query: 934 LSNRDRLLLRKQALRMKKRPVLAVGRSNIVTGVAKAIKAHFEKYPLAIVNVKGRAKGTSV 993
L N++ LR+ L + P A+GR+ G+A AI +EK +A + +K T
Sbjct: 483 LRNKEMTALRR--LARQTAPHFALGRNREHQGLATAIVKLWEKSSIAKIAIKRGVPNTCN 540
Query: 994 QEVVAKLEEATGAVLVSQEPSKVILYRGWGAEDESSPRGRQ 1034
+ ++ + TG VL+S+ ++ YRG D +P+ RQ
Sbjct: 541 DRMAEEIRKLTGGVLLSRNKEYIVFYRG---NDFITPKVRQ 578
Score = 40.4 bits (93), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 47/103 (45%), Gaps = 7/103 (6%)
Query: 172 VPTLAELKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCE-- 229
+P + + L KE+ LR L +G+ +G+ I + W + + KI +
Sbjct: 475 LPYMVKSTLRNKEMTALRRLARQTAPHFALGRNREHQGLATAIVKLWEKSSIAKIAIKRG 534
Query: 230 --DLCRLNMKRTHDSLERKTGGLVVWRSGSKIILYRGADYKYP 270
+ C R + + + TGG+++ R+ I+ YRG D+ P
Sbjct: 535 VPNTCN---DRMAEEIRKLTGGVLLSRNKEYIVFYRGNDFITP 574
>gi|357454755|ref|XP_003597658.1| Chloroplastic group IIA intron splicing facilitator CRS1 [Medicago
truncatula]
gi|355486706|gb|AES67909.1| Chloroplastic group IIA intron splicing facilitator CRS1 [Medicago
truncatula]
Length = 880
Score = 359 bits (921), Expect = 5e-96, Method: Compositional matrix adjust.
Identities = 222/542 (40%), Positives = 307/542 (56%), Gaps = 72/542 (13%)
Query: 246 KTGGLVVWRSGSKIILYRGADYKYPYFLADESSTDGASSDDLPNQLVDDEGLDETKTHSS 305
KTGGLVVW +++YRG +YK L + ST + +P++ + ++ K +
Sbjct: 299 KTGGLVVWSKKDALVVYRGCNYK----LTSKGSTK-IDTGYIPSRKTNSYEMNGVKLATI 353
Query: 306 G----ADSAKPSGQSPT----NKKVQQTLIHSVGSPDKLRYQLPGEAELVE-EADRLLDG 356
G A+S + + + P+ +K T IH + YQ P L E E DRLLDG
Sbjct: 354 GDLYRAESDRSTSELPSWNADHKHSLSTDIHD------MNYQ-PANGSLYERECDRLLDG 406
Query: 357 LGPRFTDWWGYDPQPVDADLLPATVPGYRRPFRLLPYGVQPKLTNDEMTTLRRLGRPLPC 416
LGPRF DWW + P PVDADLLP VPG+ P R+ P KLT+ E+T RR+ PLP
Sbjct: 407 LGPRFIDWWMHKPLPVDADLLPEVVPGFEPPLRICPPHASAKLTDGELTYFRRISHPLPT 466
Query: 417 HFALGRNRNLQGLAAAIVKLWEKCEIAKIAVKRGAQNTNSEMMAQELKRLTGGTLLSRDR 476
HF LGRNR LQGLAAAI+KLW K IAKIA+K G QNT++E MA ELKRLTGG LL R++
Sbjct: 467 HFVLGRNRGLQGLAAAILKLWHKSHIAKIAIKYGVQNTDNETMANELKRLTGGVLLLRNK 526
Query: 477 EFIVFYRGKDFLPPAASSAIEERRKHEFSTSNDSKEEPELGNRHDNSGDNTQDEFGC-TN 535
+I+ YRGKDFLP + + ERR+ E + + + E+ ++ DEF
Sbjct: 527 FYILLYRGKDFLPRRVADLV-ERRELELKS---CQLDEEVARMKAIQAFSSIDEFPLPQG 582
Query: 536 DQKSTMHSEQKERRSAEVAIRRTNIRLSRVLEKKAEAEKLLAELEEE------------- 582
S +E + ++ ++ N+ LS LE AE +L EL+E+
Sbjct: 583 TSTSGTLTEFRNIQNKLDEMKEVNVDLSIPLE--AEIYRLEKELKEQQRKAFILNKKIER 640
Query: 583 ------------RPEQYEVDKEGITEEERYMLRKVGLRMKAFLLM------------GRR 618
+P ++D E +T+EER RK+GL+M++ L++ GRR
Sbjct: 641 STMELSKLNAAWKPSGEDIDLEIMTDEERECFRKMGLKMRSCLVLGKAISLHSTTSAGRR 700
Query: 619 GVFDGTVENMHLHWKHRELVKIISKQRKIEAALQEARTLEVESGGILVAVERVNKGYAII 678
GVFDG +E +H HWKHRE+ K+I+ QR I + ++ LE ESGGILV+V+++ +GYAII
Sbjct: 701 GVFDGVLEGLHQHWKHREVAKVITMQRLISRVIYTSQFLERESGGILVSVDQLKEGYAII 760
Query: 679 LYRGKNYERPACLRPKTLLTKREAMKRSLEAQR-------RQSLKLHVLELTRNIEKLKL 731
+YRGKNY RP+ K LLTKR+A++RSLE QR SLK + + I LKL
Sbjct: 761 IYRGKNYSRPSEKIAKNLLTKRKALRRSLEMQRIGVSDFHSFSLKFFAHQREKTISDLKL 820
Query: 732 QL 733
+L
Sbjct: 821 KL 822
Score = 60.1 bits (144), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 70/139 (50%), Gaps = 19/139 (13%)
Query: 149 LNKEVGRQKWLAKNSKMNEKEKEVPTLAELKLSGKELRR-LRTLGIGLRKKLKIGKA--- 204
LNK++ R + SK+N K +L++ E R R +G+ +R L +GKA
Sbjct: 634 LNKKIERST--MELSKLNAAWKPSGEDIDLEIMTDEERECFRKMGLKMRSCLVLGKAISL 691
Query: 205 ---------GITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRTHDSLERKTGGLVV--- 252
G+ +G++ G+H+ W+H EV K++ + T LER++GG++V
Sbjct: 692 HSTTSAGRRGVFDGVLEGLHQHWKHREVAKVITMQRLISRVIYTSQFLERESGGILVSVD 751
Query: 253 -WRSGSKIILYRGADYKYP 270
+ G II+YRG +Y P
Sbjct: 752 QLKEGYAIIIYRGKNYSRP 770
Score = 42.7 bits (99), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 46/78 (58%), Gaps = 2/78 (2%)
Query: 168 KEKEVPTLAELKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIV 227
K++++ T A+L L L+RLR+ +R +K+ KAG+T+ +VN I WR E+ +
Sbjct: 154 KKEKIVTAADLTLDKVLLQRLRSEAAIMRIWVKVKKAGVTQDVVNQIKRTWRTNELAMVK 213
Query: 228 CE-DLCRLNMKRTHDSLE 244
+ LC+ NM R + +E
Sbjct: 214 FDIPLCQ-NMDRAREIVE 230
Score = 39.7 bits (91), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 51/104 (49%), Gaps = 2/104 (1%)
Query: 173 PTLAELKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCE-DL 231
P A KL+ EL R + L +G+ +G+ I + W + + KI + +
Sbjct: 442 PPHASAKLTDGELTYFRRISHPLPTHFVLGRNRGLQGLAAAILKLWHKSHIAKIAIKYGV 501
Query: 232 CRLNMKRTHDSLERKTGGLVVWRSGSKIILYRGADYKYPYFLAD 275
+ + + L+R TGG+++ R+ I+LYRG D+ P +AD
Sbjct: 502 QNTDNETMANELKRLTGGVLLLRNKFYILLYRGKDF-LPRRVAD 544
>gi|302781424|ref|XP_002972486.1| hypothetical protein SELMODRAFT_412905 [Selaginella moellendorffii]
gi|300159953|gb|EFJ26572.1| hypothetical protein SELMODRAFT_412905 [Selaginella moellendorffii]
Length = 795
Score = 353 bits (905), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 215/539 (39%), Positives = 306/539 (56%), Gaps = 67/539 (12%)
Query: 171 EVPTLAELKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCED 230
++P LAEL + ELRRL+ + I + +K+G G+T+ +V IH RW+ EVVKI ++
Sbjct: 203 KLPCLAELTIPELELRRLQRIAIRVVNPIKVGYLGVTKAVVQDIHRRWQKCEVVKIQPKN 262
Query: 231 LCRLNMKRTHDSLERKTGGLVVWRSGSKIILYRGADYKYPYFLADESSTDGASS------ 284
+M+ WR+G LYRG Y + D S
Sbjct: 263 WWLSSMEN--------------WRNGH---LYRGKGY---FARVDNSMVANLKKYQRRKI 302
Query: 285 DDLPNQLVDDEGLDETKTHSSGADSAKPSGQSPTNKKVQQTLIHSVGSPDKLRYQLPGEA 344
+ + + DE D + S ++ + S + E
Sbjct: 303 NLMEAIKIRDEDEDRDYSQSEHGEARRDSEKGNI------------------------ED 338
Query: 345 ELVEEADRLLDGLGPRFTDWWGYDPQPVDADLLPATVPGYRRPFRLLPYGVQPKLTNDEM 404
E ++E D LL+ LGPR+ DW G P PVD DLLPA+VPGY+ P R+LPY + L+N E+
Sbjct: 339 EYLDEIDALLEELGPRYDDWIGRKPVPVDGDLLPASVPGYKPPLRMLPYRAKKNLSNMEL 398
Query: 405 TTLRRLGRPLPCHFALGRNRNLQGLAAAIVKLWEKCEIAKIAVKRGAQNTNSEMMAQELK 464
T LRRL +PLP HF LGRNR LQGLA+AI+KLW+K E+ KI +KRG QNT +++MA+EL+
Sbjct: 399 TVLRRLVKPLPPHFVLGRNRGLQGLASAILKLWQKSELVKIGLKRGVQNTRNQLMAEELE 458
Query: 465 RLTGGTLLSRDREFIVFYRGKDFLPPAASSAIEERRKH--EFSTSNDSKEEP-ELGNRHD 521
RLTGG LLSRD+ FI YRGKDFLP + ++ + ER + E D P ++G+ +
Sbjct: 459 RLTGGVLLSRDKFFITLYRGKDFLPTSVAAVLRERESNMRELLLKEDQVRIPAQIGDGQN 518
Query: 522 N----SGDNTQD-EFGCTNDQKSTMHSEQKERRSAEVAI-----RRTNIRLSRVLEKKAE 571
SG ++ E + + + ++ +R SA VA+ +R +L+ + KK
Sbjct: 519 RTTPVSGSLSESMEMRRQWEAQRSEKDDEMDRNSAVVALKVREQKRLEAKLAAAISKKRR 578
Query: 572 AEKLLAELEEE-RPEQYEVDKEGITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVENMHL 630
A+ + +LE ++ D+E ITEEERYM +K+GLRM AFLL+GRRGVFDG +ENMHL
Sbjct: 579 ADLQIVKLERSLLLSEHPRDRETITEEERYMFKKLGLRMDAFLLIGRRGVFDGVIENMHL 638
Query: 631 HWKHRELVKIISKQRKIEAALQEARTLEVESGGILVAVE---RVNKGYAIILYRGKNYE 686
HWKHRELVK+I K++ AL+ A+ LE+ESGGILV V + K +I+ K+Y+
Sbjct: 639 HWKHRELVKLILKEKDKAIALEVAKMLEIESGGILVGVALQLHIEKLEELIMKLRKDYD 697
Score = 42.7 bits (99), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 47/88 (53%), Gaps = 2/88 (2%)
Query: 934 LSNRDRLLLRKQALRMKKRPVLAVGRSNIVTGVAKAIKAHFEKYPLAIVNVKGRAKGTSV 993
LSN + +LR+ + P +GR+ + G+A AI ++K L + +K + T
Sbjct: 393 LSNMELTVLRRLVKPLP--PHFVLGRNRGLQGLASAILKLWQKSELVKIGLKRGVQNTRN 450
Query: 994 QEVVAKLEEATGAVLVSQEPSKVILYRG 1021
Q + +LE TG VL+S++ + LYRG
Sbjct: 451 QLMAEELERLTGGVLLSRDKFFITLYRG 478
>gi|5123569|emb|CAB45335.1| putative protein [Arabidopsis thaliana]
gi|7269874|emb|CAB79733.1| putative protein [Arabidopsis thaliana]
Length = 776
Score = 350 bits (899), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 202/409 (49%), Positives = 263/409 (64%), Gaps = 32/409 (7%)
Query: 344 AELVEEADRLLDGLGPRFTDWWGYDPQPVDADLLPATVPGYRRPFRLLPYGVQPKLTNDE 403
+EL E D LLD +GPRF DW G P PVDADLLP V GYR PFR+LP GV+P L+N E
Sbjct: 343 SELCELND-LLDEVGPRFHDWTGCAPFPVDADLLPGYVEGYRCPFRILPQGVKPCLSNTE 401
Query: 404 MTTLRRLGRPLPCHFALGRNRNLQGLAAAIVKLWEKCEIAKIAVKRGAQNTNSEMMAQEL 463
MT +RRL R P HFALGR+R LQGLA A+VKLW K IAKIA+KRG +NT +E MA+EL
Sbjct: 402 MTEMRRLARTSPPHFALGRSRELQGLAKAMVKLWAKSAIAKIAIKRGVENTRNERMAEEL 461
Query: 464 KRLTGGTLLSRDREFIVFYRGKDFLPPAASSAIEERRKHEFSTSNDSKEEP--ELGNRHD 521
KRLT G L+SR++E+IVFYR + A+ ER+K E + +KE+ E+ +
Sbjct: 462 KRLTRGVLVSRNKEYIVFYR--------VAEALTERQK-EITEVLQAKEDQAREMASTRA 512
Query: 522 N-----SGDNTQDEFGCTND----------QKSTMHSEQKERRSAEVA----IRRTNIRL 562
TQ G + S++ E+ +R SA + IR +RL
Sbjct: 513 TLTSQAKSPKTQLLAGTLAETIAASSRWAPNASSVDIEELKRESASIKRAALIRDLELRL 572
Query: 563 SRVLEKKAEAEKLLAELEEE-RPEQYEVDKEGITEEERYMLRKVGLRMKAFLLMGRRGVF 621
+K AE+ LA+++++ P + D E ITEEER + RK+GL M FLL+GRR V+
Sbjct: 573 LYGKQKLRRAERDLAKVQKDLDPSELPTDSEIITEEERLLYRKIGLSMDPFLLLGRREVY 632
Query: 622 DGTVENMHLHWKHRELVKIISKQRKIEAALQEARTLEVESGGILVAVERVNKGYAIILYR 681
DGT+ENMHLHWKHRELVK+I + + + A +LE ESGG+LV+V++ KGYAIILYR
Sbjct: 633 DGTIENMHLHWKHRELVKVIVRGKSLPQVKHIAISLEAESGGVLVSVDKTMKGYAIILYR 692
Query: 682 GKNYERPACLRPKTLLTKREAMKRSLEAQRRQSLKLHVLELTRNIEKLK 730
GKNY+ P LRP LLT+++A RS+E QRR++LK HV +L IE LK
Sbjct: 693 GKNYQMPFRLRPSNLLTRKKAFARSIELQRREALKYHVADLEERIELLK 741
Score = 67.0 bits (162), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 51/87 (58%), Gaps = 8/87 (9%)
Query: 158 WLAKNSKMNEKEKEVPTLAELKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHER 217
W + S E E+ VP EL+RLR + + + +++K+G AGIT+ +V IHE+
Sbjct: 230 WRTRKSNTVEAERIVPE--------HELKRLRNVALRMVERVKVGSAGITQALVEAIHEK 281
Query: 218 WRHAEVVKIVCEDLCRLNMKRTHDSLE 244
W EVVK+ + LNMKRTH+ LE
Sbjct: 282 WEVDEVVKLKFSEPYSLNMKRTHEVLE 308
Score = 62.4 bits (150), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 75/142 (52%), Gaps = 10/142 (7%)
Query: 141 AAIVRYNQLNKEVGRQKWLAKNSKMNEKEK-----EVPTLAELKLSGKELRRLRTLGIGL 195
AA++R +L G+QK + + +K E+PT +E+ ++ +E R +G+ +
Sbjct: 562 AALIRDLELRLLYGKQKLRRAERDLAKVQKDLDPSELPTDSEI-ITEEERLLYRKIGLSM 620
Query: 196 RKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRTHDSLERKTGGLVV--- 252
L +G+ + +G + +H W+H E+VK++ +K SLE ++GG++V
Sbjct: 621 DPFLLLGRREVYDGTIENMHLHWKHRELVKVIVRGKSLPQVKHIAISLEAESGGVLVSVD 680
Query: 253 -WRSGSKIILYRGADYKYPYFL 273
G IILYRG +Y+ P+ L
Sbjct: 681 KTMKGYAIILYRGKNYQMPFRL 702
Score = 45.4 bits (106), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 48/92 (52%), Gaps = 7/92 (7%)
Query: 934 LSNRDRLLLRKQALRMKKRPVLAVGRSNIVTGVAKAIKAHFEKYPLAIVNVKGRAKGTSV 993
++ +RLL RK L M P L +GR + G + + H++ L V V+G++ V
Sbjct: 605 ITEEERLLYRKIGLSMD--PFLLLGRREVYDGTIENMHLHWKHRELVKVIVRGKSL-PQV 661
Query: 994 QEVVAKLEEATGAVLVSQEPS----KVILYRG 1021
+ + LE +G VLVS + + +ILYRG
Sbjct: 662 KHIAISLEAESGGVLVSVDKTMKGYAIILYRG 693
>gi|413918578|gb|AFW58510.1| CFM2 alternative polyadenylation form 1 [Zea mays]
Length = 681
Score = 334 bits (856), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 169/296 (57%), Positives = 216/296 (72%), Gaps = 4/296 (1%)
Query: 323 QQTLIHSVGSPDKLRYQLPGEAELVEEADRLLDGLGPRFTDWWGYDPQPVDADLLPATVP 382
+ +L+ VGS +K R QLPGE +L EEAD+LLDGLGPRF+ WWGYDP PVDADLLPA VP
Sbjct: 357 RSSLVAGVGSQNKFRLQLPGEVKLAEEADKLLDGLGPRFSGWWGYDPVPVDADLLPAIVP 416
Query: 383 GYRRPFRLLPYGVQPKLTNDEMTTLRRLGRPLPCHFALGRNRNLQGLAAAIVKLWEKCEI 442
GYRRPFRLLP GV PKLT+ EMT LRRL LP H+ALGR+ NLQGLAA+++KLWE+CE+
Sbjct: 417 GYRRPFRLLPSGVPPKLTDREMTILRRLAHALPFHYALGRSSNLQGLAASMIKLWERCEV 476
Query: 443 AKIAVKRGAQNTNSEMMAQELKRLTGGTLLSRDREFIVFYRGKDFLPPAASSAIEERRKH 502
AKIA+KR A NT+SE++ +E+K LTGGTLLSRD+E IVFYRGKDFLPPA S AIE+RRK
Sbjct: 477 AKIALKRDAHNTDSELITEEVKELTGGTLLSRDKESIVFYRGKDFLPPAVSLAIEKRRKL 536
Query: 503 EFSTSNDSKE--EPELGNRHDNSGDNTQDEFGCTNDQKSTMHSEQKERRSAEVAIRRTNI 560
ST +K E + ++D+ + D ++ +++ + E S +
Sbjct: 537 GSSTIYKAKPGIEESMPTQNDSVLKVSSDVSVHVREEGTSVTENRAE--SLNTVAKDVET 594
Query: 561 RLSRVLEKKAEAEKLLAELEEERPEQYEVDKEGITEEERYMLRKVGLRMKAFLLMG 616
RLS+ + +KA+AEKL+ ELE+ P +E I+E+ERYMLRKVGL+MK FLL+G
Sbjct: 595 RLSQAIAEKAKAEKLIEELEKASPLSKAEVRETISEDERYMLRKVGLKMKQFLLLG 650
Score = 203 bits (517), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 124/265 (46%), Positives = 161/265 (60%), Gaps = 28/265 (10%)
Query: 66 SAIQRIADKLRSLGIVEQTTSKDDTLNPEPETRATDNAGEIFIPLPHRIPKYRVGHTIDD 125
SA++RI+DKLRSLG +E T S+ T P A + GEIF+P P ++P++RVG T+D
Sbjct: 47 SALRRISDKLRSLGYLE-TVSEPPTPAPNKSGDAP-SPGEIFVPTPAQLPRHRVGSTLDP 104
Query: 126 SWSTPENPVPVPGTGAAIVRYNQLNKEVGRQKWLAKNSKMNEKEKEVPTLAELKLSGKEL 185
SW+T G G A RQ+ + + P+ AEL L EL
Sbjct: 105 SWAT--------GDGEA--------SSTSRQRRRGRGRDASGSPSAPPSAAELALPRDEL 148
Query: 186 RRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRTHDSLER 245
RRL+ +GI +RK+LK+GKAGITEGIVNGIHERWR+AEVVK+ CED+ +NM+RTH+ LER
Sbjct: 149 RRLQGIGIRVRKRLKVGKAGITEGIVNGIHERWRNAEVVKLRCEDVWAMNMRRTHEILER 208
Query: 246 KTGGLVVWRSGSKIILYRGADYKYPYFLADE---SSTDGASSDDLPNQLVDDEGLDETKT 302
KTGGLV+WRSGS IILYRG +Y YPYF E S D SSD + G DE +T
Sbjct: 209 KTGGLVIWRSGSTIILYRGTNYTYPYFHHSERVDSFLDKESSDQ------SNSG-DEDET 261
Query: 303 HSSGADSAKPSGQSPTNKKVQQTLI 327
S S + S ++P +Q +
Sbjct: 262 SSQHGSSHEKSSENPVVACAEQIHV 286
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 51/96 (53%), Gaps = 4/96 (4%)
Query: 593 GITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVENMHLHWKHRELVKIISKQRKIEAALQ 652
+ +E L+ +G+R++ L +G+ G+ +G V +H W++ E+VK+ + +
Sbjct: 142 ALPRDELRRLQGIGIRVRKRLKVGKAGITEGIVNGIHERWRNAEVVKLRCEDVWAMNMRR 201
Query: 653 EARTLEVESGGILVAVERVNKGYAIILYRGKNYERP 688
LE ++GG+++ G IILYRG NY P
Sbjct: 202 THEILERKTGGLVI----WRSGSTIILYRGTNYTYP 233
Score = 43.5 bits (101), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 48/100 (48%), Gaps = 1/100 (1%)
Query: 172 VPTLAELKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCE-D 230
+P+ KL+ +E+ LR L L +G++ +G+ + + W EV KI + D
Sbjct: 425 LPSGVPPKLTDREMTILRRLAHALPFHYALGRSSNLQGLAASMIKLWERCEVAKIALKRD 484
Query: 231 LCRLNMKRTHDSLERKTGGLVVWRSGSKIILYRGADYKYP 270
+ + + ++ TGG ++ R I+ YRG D+ P
Sbjct: 485 AHNTDSELITEEVKELTGGTLLSRDKESIVFYRGKDFLPP 524
Score = 42.7 bits (99), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 52/89 (58%), Gaps = 2/89 (2%)
Query: 933 QLSNRDRLLLRKQALRMKKRPVLAVGRSNIVTGVAKAIKAHFEKYPLAIVNVKGRAKGTS 992
+L++R+ +LR+ A + A+GRS+ + G+A ++ +E+ +A + +K A T
Sbjct: 432 KLTDREMTILRRLAHALPFH--YALGRSSNLQGLAASMIKLWERCEVAKIALKRDAHNTD 489
Query: 993 VQEVVAKLEEATGAVLVSQEPSKVILYRG 1021
+ + +++E TG L+S++ ++ YRG
Sbjct: 490 SELITEEVKELTGGTLLSRDKESIVFYRG 518
Score = 40.8 bits (94), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 32/140 (22%), Positives = 63/140 (45%), Gaps = 3/140 (2%)
Query: 392 PYGVQPKLTNDEMTTLRRLGRPLPCHFALGRNRNLQGLAAAIVKLWEKCEIAKIAVKRGA 451
P + L DE+ L+ +G + +G+ +G+ I + W E+ K+ +
Sbjct: 136 PSAAELALPRDELRRLQGIGIRVRKRLKVGKAGITEGIVNGIHERWRNAEVVKLRCE-DV 194
Query: 452 QNTNSEMMAQELKRLTGGTLLSRDREFIVFYRGKDFLPPA--ASSAIEERRKHEFSTSND 509
N + L+R TGG ++ R I+ YRG ++ P S ++ E S ++
Sbjct: 195 WAMNMRRTHEILERKTGGLVIWRSGSTIILYRGTNYTYPYFHHSERVDSFLDKESSDQSN 254
Query: 510 SKEEPELGNRHDNSGDNTQD 529
S +E E ++H +S + + +
Sbjct: 255 SGDEDETSSQHGSSHEKSSE 274
>gi|154986385|gb|ABS89146.1| CFM2 alternative polyadenylation form 1 [Zea mays]
Length = 668
Score = 333 bits (855), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 169/296 (57%), Positives = 216/296 (72%), Gaps = 4/296 (1%)
Query: 323 QQTLIHSVGSPDKLRYQLPGEAELVEEADRLLDGLGPRFTDWWGYDPQPVDADLLPATVP 382
+ +L+ VGS +K R QLPGE +L EEAD+LLDGLGPRF+ WWGYDP PVDADLLPA VP
Sbjct: 344 RSSLVAGVGSQNKFRLQLPGEVKLAEEADKLLDGLGPRFSGWWGYDPVPVDADLLPAIVP 403
Query: 383 GYRRPFRLLPYGVQPKLTNDEMTTLRRLGRPLPCHFALGRNRNLQGLAAAIVKLWEKCEI 442
GYRRPFRLLP GV PKLT+ EMT LRRL LP H+ALGR+ NLQGLAA+++KLWE+CE+
Sbjct: 404 GYRRPFRLLPSGVPPKLTDREMTILRRLAHALPFHYALGRSSNLQGLAASMIKLWERCEV 463
Query: 443 AKIAVKRGAQNTNSEMMAQELKRLTGGTLLSRDREFIVFYRGKDFLPPAASSAIEERRKH 502
AKIA+KR A NT+SE++ +E+K LTGGTLLSRD+E IVFYRGKDFLPPA S AIE+RRK
Sbjct: 464 AKIALKRDAHNTDSELITEEVKELTGGTLLSRDKESIVFYRGKDFLPPAVSLAIEKRRKL 523
Query: 503 EFSTSNDSKE--EPELGNRHDNSGDNTQDEFGCTNDQKSTMHSEQKERRSAEVAIRRTNI 560
ST +K E + ++D+ + D ++ +++ + E S +
Sbjct: 524 GSSTIYKAKPGIEESMPTQNDSVLKVSSDVSVHVREEGTSVTENRAE--SLNTVAKDVET 581
Query: 561 RLSRVLEKKAEAEKLLAELEEERPEQYEVDKEGITEEERYMLRKVGLRMKAFLLMG 616
RLS+ + +KA+AEKL+ ELE+ P +E I+E+ERYMLRKVGL+MK FLL+G
Sbjct: 582 RLSQAIAEKAKAEKLIEELEKASPLSKAEVRETISEDERYMLRKVGLKMKQFLLLG 637
Score = 203 bits (516), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 124/265 (46%), Positives = 161/265 (60%), Gaps = 28/265 (10%)
Query: 66 SAIQRIADKLRSLGIVEQTTSKDDTLNPEPETRATDNAGEIFIPLPHRIPKYRVGHTIDD 125
SA++RI+DKLRSLG +E T S+ T P A + GEIF+P P ++P++RVG T+D
Sbjct: 34 SALRRISDKLRSLGYLE-TVSEPPTPAPNKSGDAP-SPGEIFVPTPAQLPRHRVGSTLDP 91
Query: 126 SWSTPENPVPVPGTGAAIVRYNQLNKEVGRQKWLAKNSKMNEKEKEVPTLAELKLSGKEL 185
SW+T G G A RQ+ + + P+ AEL L EL
Sbjct: 92 SWAT--------GDGEA--------SSTSRQRRRGRGRDASGSPSAPPSAAELALPRDEL 135
Query: 186 RRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRTHDSLER 245
RRL+ +GI +RK+LK+GKAGITEGIVNGIHERWR+AEVVK+ CED+ +NM+RTH+ LER
Sbjct: 136 RRLQGIGIRVRKRLKVGKAGITEGIVNGIHERWRNAEVVKLRCEDVWAMNMRRTHEILER 195
Query: 246 KTGGLVVWRSGSKIILYRGADYKYPYFLADE---SSTDGASSDDLPNQLVDDEGLDETKT 302
KTGGLV+WRSGS IILYRG +Y YPYF E S D SSD + G DE +T
Sbjct: 196 KTGGLVIWRSGSTIILYRGTNYTYPYFHHSERVDSFLDKESSDQ------SNSG-DEDET 248
Query: 303 HSSGADSAKPSGQSPTNKKVQQTLI 327
S S + S ++P +Q +
Sbjct: 249 SSQHGSSHEKSSENPVVACAEQIHV 273
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 51/96 (53%), Gaps = 4/96 (4%)
Query: 593 GITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVENMHLHWKHRELVKIISKQRKIEAALQ 652
+ +E L+ +G+R++ L +G+ G+ +G V +H W++ E+VK+ + +
Sbjct: 129 ALPRDELRRLQGIGIRVRKRLKVGKAGITEGIVNGIHERWRNAEVVKLRCEDVWAMNMRR 188
Query: 653 EARTLEVESGGILVAVERVNKGYAIILYRGKNYERP 688
LE ++GG+++ G IILYRG NY P
Sbjct: 189 THEILERKTGGLVI----WRSGSTIILYRGTNYTYP 220
Score = 43.1 bits (100), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 48/100 (48%), Gaps = 1/100 (1%)
Query: 172 VPTLAELKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCE-D 230
+P+ KL+ +E+ LR L L +G++ +G+ + + W EV KI + D
Sbjct: 412 LPSGVPPKLTDREMTILRRLAHALPFHYALGRSSNLQGLAASMIKLWERCEVAKIALKRD 471
Query: 231 LCRLNMKRTHDSLERKTGGLVVWRSGSKIILYRGADYKYP 270
+ + + ++ TGG ++ R I+ YRG D+ P
Sbjct: 472 AHNTDSELITEEVKELTGGTLLSRDKESIVFYRGKDFLPP 511
Score = 42.7 bits (99), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 52/89 (58%), Gaps = 2/89 (2%)
Query: 933 QLSNRDRLLLRKQALRMKKRPVLAVGRSNIVTGVAKAIKAHFEKYPLAIVNVKGRAKGTS 992
+L++R+ +LR+ A + A+GRS+ + G+A ++ +E+ +A + +K A T
Sbjct: 419 KLTDREMTILRRLAHALPFH--YALGRSSNLQGLAASMIKLWERCEVAKIALKRDAHNTD 476
Query: 993 VQEVVAKLEEATGAVLVSQEPSKVILYRG 1021
+ + +++E TG L+S++ ++ YRG
Sbjct: 477 SELITEEVKELTGGTLLSRDKESIVFYRG 505
Score = 40.8 bits (94), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 32/140 (22%), Positives = 63/140 (45%), Gaps = 3/140 (2%)
Query: 392 PYGVQPKLTNDEMTTLRRLGRPLPCHFALGRNRNLQGLAAAIVKLWEKCEIAKIAVKRGA 451
P + L DE+ L+ +G + +G+ +G+ I + W E+ K+ +
Sbjct: 123 PSAAELALPRDELRRLQGIGIRVRKRLKVGKAGITEGIVNGIHERWRNAEVVKLRCE-DV 181
Query: 452 QNTNSEMMAQELKRLTGGTLLSRDREFIVFYRGKDFLPPA--ASSAIEERRKHEFSTSND 509
N + L+R TGG ++ R I+ YRG ++ P S ++ E S ++
Sbjct: 182 WAMNMRRTHEILERKTGGLVIWRSGSTIILYRGTNYTYPYFHHSERVDSFLDKESSDQSN 241
Query: 510 SKEEPELGNRHDNSGDNTQD 529
S +E E ++H +S + + +
Sbjct: 242 SGDEDETSSQHGSSHEKSSE 261
>gi|297807647|ref|XP_002871707.1| ATCRS1/CRS1 [Arabidopsis lyrata subsp. lyrata]
gi|297317544|gb|EFH47966.1| ATCRS1/CRS1 [Arabidopsis lyrata subsp. lyrata]
Length = 727
Score = 333 bits (853), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 222/620 (35%), Positives = 321/620 (51%), Gaps = 116/620 (18%)
Query: 168 KEKEVPTLAELKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIV 227
K++ VPT AEL L L RLR +RK + + KAG+TE +VN I W+ E+ +
Sbjct: 164 KKERVPTTAELILDEGLLNRLRREASKMRKWVNVRKAGVTETVVNEIRLIWKLKELAMVR 223
Query: 228 CE-DLCRLNMKRTHDSLERKTGGLVVWRSGSKIILYRGADYKYPYFLADESSTDGASSDD 286
+ LCR NM+R + +E KTGGLVV +++YRG P + ++E+ + D+
Sbjct: 224 FDVPLCR-NMERAQEIIEMKTGGLVVLSKKEFLVVYRGG----PSYSSEETRS---GQDE 275
Query: 287 LPNQLVDDEGLDETKTHSSGADSAKPSGQSPTNKKVQQTLIHSVGSPDKLRYQLPGEAEL 346
+ + L + E D+L
Sbjct: 276 ISSSLYEREA-------------------------------------DRL---------- 288
Query: 347 VEEADRLLDGLGPRFTDWWGYDPQPVDADLLPATVPGYRRPFRLLPYGVQPKLTNDEMTT 406
LDGLGPR+ DWW P PVDADLLP V GYR P R P + KL+++E+T
Sbjct: 289 -------LDGLGPRYLDWWMRRPFPVDADLLPQVVNGYRTPSRRCPPNTRAKLSDEELTY 341
Query: 407 LRRLGRPLPCHFALGRNRNLQGLAAAIVKLWEKCEIAKIAVKRGAQNTNSEMMAQELKRL 466
LR + + LP HF LGRN LQGLA+AIVKLWEKC IAKIA+K GA NTN+E MA ELK L
Sbjct: 342 LRNIAQALPFHFVLGRNHGLQGLASAIVKLWEKCIIAKIAIKWGALNTNNEEMADELKHL 401
Query: 467 TGGTLLSRDREFIVFYRGKDFLPPAASSAIEERRK--HEFSTSNDSKEEPEL-------- 516
TGG L+ R++ I+ YRGKDFL + +++R + + ++K E ++
Sbjct: 402 TGGVLILRNKYLIILYRGKDFLSDEVTDLVDDRERLLRGYQHFEETKREGDIEILEVVTD 461
Query: 517 -GNRHDNSGDNTQDEFGCTNDQKSTMHSE----QKERRSAEVAIRRTNIRLSRVLEKKAE 571
+ S T EF + M + + E+ E ++ +LS +L+ K E
Sbjct: 462 GKQLKETSKSGTLLEFQELQRKFGEMETRNLETEAEKARLEKELKSQEHKLS-ILKSKIE 520
Query: 572 AEKL-LAELEE-ERPEQYEVDKEGITEEERYMLRKVGLRMKAFL---------------- 613
+ L +L +P + + D E T EER LR++GL+M + L
Sbjct: 521 KSTMELFKLNSLWKPSERDDDIEIFTNEERECLRRIGLKMSSSLVLGRSNRIHSCLLLIP 580
Query: 614 ------------------LMGRRGVFDGTVENMHLHWKHRELVKIISKQRKIEAALQEAR 655
+GRRGVF G +E +H HWKHRE+ K+I+ Q+ + A+
Sbjct: 581 YPLAMRLIYINFIFVFVSFLGRRGVFVGIMEGLHQHWKHREVAKVITMQKIFSRVVYTAK 640
Query: 656 TLEVESGGILVAVERVNKGYAIILYRGKNYERPAC-LRPKTLLTKREAMKRSLEAQRRQS 714
+LE ES G+L+++E++ +G+AI++YRGKNY+RP+ L + LLTKR+A++RS+ QR S
Sbjct: 641 SLEAESNGVLISIEKLKEGHAILIYRGKNYKRPSSKLMAQNLLTKRKALQRSVAMQRLGS 700
Query: 715 LKLHVLELTRNIEKLKLQLV 734
LK + R IE LKL LV
Sbjct: 701 LKFFAYQRERVIEDLKLSLV 720
Score = 44.3 bits (103), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 54/94 (57%), Gaps = 3/94 (3%)
Query: 928 NSRAIQLSNRDRLLLRKQALRMKKRPVLAVGRSNIVTGVAKAIKAHFEKYPLAIVNVKGR 987
N+RA +LS+ + LR A + VL GR++ + G+A AI +EK +A + +K
Sbjct: 329 NTRA-KLSDEELTYLRNIAQALPFHFVL--GRNHGLQGLASAIVKLWEKCIIAKIAIKWG 385
Query: 988 AKGTSVQEVVAKLEEATGAVLVSQEPSKVILYRG 1021
A T+ +E+ +L+ TG VL+ + +ILYRG
Sbjct: 386 ALNTNNEEMADELKHLTGGVLILRNKYLIILYRG 419
>gi|224127512|ref|XP_002329296.1| predicted protein [Populus trichocarpa]
gi|222870750|gb|EEF07881.1| predicted protein [Populus trichocarpa]
Length = 687
Score = 330 bits (847), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 196/432 (45%), Positives = 258/432 (59%), Gaps = 30/432 (6%)
Query: 341 PGEAELVE-EADRLLDGLGPRFTDWWGYDPQPVDADLLPATVPGYRRPFRLLPYGVQPKL 399
P L E E DRLLDGLGPRF DWW P PVDADLLP V G+R P RL P ++ KL
Sbjct: 247 PINGSLFERETDRLLDGLGPRFVDWWMRKPLPVDADLLPEVVKGFRSPSRLCPPRMRSKL 306
Query: 400 TNDEMTTLRRLGRPLPCHFALGRNRNLQGLAAAIVKLWEKCEIAKIAVKRGAQNTNSEMM 459
+DE+T LR+L + LP HF LGRNR LQGLAAAI+KLWEK IAKIAVK G NTN+E M
Sbjct: 307 KDDELTYLRKLAQSLPTHFVLGRNRRLQGLAAAILKLWEKTIIAKIAVKWGVPNTNNEQM 366
Query: 460 AQELK------------RLTGGTLLSRDREFIVFYRGKDFLPPAASSAIEERR--KHEFS 505
A ELK LTGG LL R++ FI+ YRGKDFLP ++ I +R +
Sbjct: 367 ADELKAKIFLMLMLYTQSLTGGVLLLRNKFFIILYRGKDFLPGQVANVIVDREIALRKCQ 426
Query: 506 TSNDSKEEPELGNRHDNSGDNTQDEFGCTND-QKSTMHSEQKERRSAEVAI--------- 555
T+ + + + G G + Q+ + ++ + +E+ +
Sbjct: 427 TNEEGARMKAIETSYMPGGPTNTSRCGTLYEFQEFQIKFQKTAKGDSEIQLEAYKEKLER 486
Query: 556 --RRTNIRLSRVLEKKAEA-EKLLAELEEER-PEQYEVDKEGITEEERYMLRKVGLRMKA 611
R RL R+L+ K E K L++L P + D+ +TEEER RK+GL+++
Sbjct: 487 ELRNQEYRL-RILKSKIEKPAKDLSKLNSAWVPSPRDADQGIMTEEERECFRKIGLKLRG 545
Query: 612 FLLMGRRGVFDGTVENMHLHWKHRELVKIISKQRKIEAALQEARTLEVESGGILVAVERV 671
L++GRRGVF+G +E +H HWKHRE+VK+I+ QR + A LE ES GILV+V+++
Sbjct: 546 SLVLGRRGVFEGVMEGLHQHWKHREVVKVITMQRVFSQVIHTATLLEAESDGILVSVDKL 605
Query: 672 NKGYAIILYRGKNYERPACLRPKTLLTKREAMKRSLEAQRRQSLKLHVLELTRNIEKLKL 731
+G+AII+YRGKNY+RP L K LLTKREA+KRSL QR SLK + R I LKL
Sbjct: 606 KEGHAIIIYRGKNYKRPLRLLKKNLLTKREALKRSLLIQRVGSLKYFANQRERVISDLKL 665
Query: 732 QLVKDKEANSLE 743
+LV ++S E
Sbjct: 666 KLVYFYPSSSYE 677
Score = 67.8 bits (164), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/103 (39%), Positives = 61/103 (59%), Gaps = 4/103 (3%)
Query: 168 KEKEVPTLAELKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKI- 226
K+++V + AEL L + L RLR +R +K+ KAG+T+ +V+ I WR +E+ I
Sbjct: 131 KKEKVVSKAELSLDKELLERLRGEAAKMRTWVKVKKAGVTQSVVDEIRLTWRTSELAMIK 190
Query: 227 VCEDLCRLNMKRTHDSLERKTGGLVVWRSGSKIILYRGADYKY 269
LCR NM R D +E TGGLVVW ++YRG +Y++
Sbjct: 191 FYMPLCR-NMNRARDIVE--TGGLVVWTRKDIHVVYRGCNYQW 230
Score = 65.5 bits (158), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 51/87 (58%), Gaps = 4/87 (4%)
Query: 188 LRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRTHDSLERKT 247
R +G+ LR L +G+ G+ EG++ G+H+ W+H EVVK++ + T LE ++
Sbjct: 536 FRKIGLKLRGSLVLGRRGVFEGVMEGLHQHWKHREVVKVITMQRVFSQVIHTATLLEAES 595
Query: 248 GGLVV----WRSGSKIILYRGADYKYP 270
G++V + G II+YRG +YK P
Sbjct: 596 DGILVSVDKLKEGHAIIIYRGKNYKRP 622
>gi|9755828|emb|CAC01859.1| putative protein [Arabidopsis thaliana]
Length = 718
Score = 325 bits (832), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 179/414 (43%), Positives = 251/414 (60%), Gaps = 39/414 (9%)
Query: 349 EADRLLDGLGPRFTDWWGYDPQPVDADLLPATVPGYRRPFRLLPYGVQPKLTNDEMTTLR 408
EADRLLDGLGPR+ DWW P PVDADLLP V GY P R P + KLT++E+T LR
Sbjct: 309 EADRLLDGLGPRYMDWWMRRPFPVDADLLPEVVNGYMTPSRRCPPNTRAKLTDEELTYLR 368
Query: 409 RLGRPLPCHFALGRNRNLQGLAAAIVKLWEKCEIAKIAVKRGAQNTNSEMMAQELKRLTG 468
+ +PLP HF LGRN LQGLA+AIVKLWEKC IAKIA+K GA NTN+E MA EL+ LTG
Sbjct: 369 NIAQPLPFHFVLGRNYGLQGLASAIVKLWEKCIIAKIAIKWGALNTNNEEMADELRYLTG 428
Query: 469 GTLLSRDREFIVFYRGKDFLPPAASSAIEERRK--HEFSTSNDSKEEPELGNRHDNSGDN 526
G L+ R++ IV YRGKDFL + +E+R + + ++K E ++ +
Sbjct: 429 GVLILRNKYLIVLYRGKDFLSDEVADLVEDRERLLSRYQHFEETKRESDIELLEVVTNGK 488
Query: 527 TQDEFGCTNDQKSTMHSEQKERRSAEVAIRRTNIRLSRVLEKKAEAEKLLAELEEE---- 582
E TN + + ++ +R+ E+ R LE +AE +L EL+ +
Sbjct: 489 QLKE---TNKSGTLLEFQELQRKFGEMD--------PRNLETEAEKARLEKELKSQEHKL 537
Query: 583 ---------------------RPEQYEVDKEGITEEERYMLRKVGLRMKAFLLMGRRGVF 621
+P + + D E +T EER LR++GL+M + L++GRRGVF
Sbjct: 538 SILKSKIEKSNMELFKLNSLWKPSEGDDDIEILTNEERECLRRIGLKMNSSLVLGRRGVF 597
Query: 622 DGTVENMHLHWKHRELVKIISKQRKIEAALQEARTLEVESGGILVAVERVNKGYAIILYR 681
G +E +H HWKHRE+ K+I+ Q+ + A+ LE ES G+L+++E++ +G+AI++YR
Sbjct: 598 FGVMEGLHQHWKHREVAKVITMQKLFSRVVYTAKALETESNGVLISIEKLKEGHAILIYR 657
Query: 682 GKNYERPAC-LRPKTLLTKREAMKRSLEAQRRQSLKLHVLELTRNIEKLKLQLV 734
GKNY+RP+ L + LLTKR+A++RS+ QR SLK + R IE LK+ LV
Sbjct: 658 GKNYKRPSSKLMAQNLLTKRKALQRSVVMQRLGSLKFFAYQRERAIEDLKVSLV 711
Score = 60.1 bits (144), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 54/95 (56%), Gaps = 4/95 (4%)
Query: 180 LSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRT 239
L+ +E LR +G+ + L +G+ G+ G++ G+H+ W+H EV K++ + T
Sbjct: 570 LTNEERECLRRIGLKMNSSLVLGRRGVFFGVMEGLHQHWKHREVAKVITMQKLFSRVVYT 629
Query: 240 HDSLERKTGGLVV----WRSGSKIILYRGADYKYP 270
+LE ++ G+++ + G I++YRG +YK P
Sbjct: 630 AKALETESNGVLISIEKLKEGHAILIYRGKNYKRP 664
Score = 54.7 bits (130), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 82/337 (24%), Positives = 135/337 (40%), Gaps = 51/337 (15%)
Query: 179 KLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCE-DLCRLNMK 237
KL+ +EL LR + L +G+ +G+ + I + W + KI + N +
Sbjct: 358 KLTDEELTYLRNIAQPLPFHFVLGRNYGLQGLASAIVKLWEKCIIAKIAIKWGALNTNNE 417
Query: 238 RTHDSLERKTGGLVVWRSGSKIILYRGADYKYPYFLADESSTDGASSDDLPNQLVDDEGL 297
D L TGG+++ R+ I+LYRG D FL+DE + +D L +
Sbjct: 418 EMADELRYLTGGVLILRNKYLIVLYRGKD-----FLSDEVAD---LVEDRERLLSRYQHF 469
Query: 298 DETKTHS--------SGADSAKPSGQSPTNKKVQQTLIHSVGSPDKLRYQLPGEAELVEE 349
+ETK S + K + +S T + Q+ L G D P E E
Sbjct: 470 EETKRESDIELLEVVTNGKQLKETNKSGTLLEFQE-LQRKFGEMD------PRNLETEAE 522
Query: 350 ADRLLDGLGPRFTDWWGYDPQPVDADLLPATVPGYRRPFRLLPYGVQPK--------LTN 401
RL L Q +L + + L +P LTN
Sbjct: 523 KARLEKEL----------KSQEHKLSILKSKIEKSNMELFKLNSLWKPSEGDDDIEILTN 572
Query: 402 DEMTTLRRLGRPLPCHFALGRNRNLQGLAAAIVKLWEKCEIAKIAVKRGAQNTNSEMM-- 459
+E LRR+G + LGR G+ + + W+ E+AK+ Q S ++
Sbjct: 573 EERECLRRIGLKMNSSLVLGRRGVFFGVMEGLHQHWKHREVAKVIT---MQKLFSRVVYT 629
Query: 460 AQELKRLTGGTLLS----RDREFIVFYRGKDFLPPAA 492
A+ L+ + G L+S ++ I+ YRGK++ P++
Sbjct: 630 AKALETESNGVLISIEKLKEGHAILIYRGKNYKRPSS 666
Score = 41.2 bits (95), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 38/67 (56%)
Query: 955 LAVGRSNIVTGVAKAIKAHFEKYPLAIVNVKGRAKGTSVQEVVAKLEEATGAVLVSQEPS 1014
+GR+ + G+A AI +EK +A + +K A T+ +E+ +L TG VL+ +
Sbjct: 378 FVLGRNYGLQGLASAIVKLWEKCIIAKIAIKWGALNTNNEEMADELRYLTGGVLILRNKY 437
Query: 1015 KVILYRG 1021
++LYRG
Sbjct: 438 LIVLYRG 444
>gi|186523322|ref|NP_197122.2| ortholog of maize chloroplast splicing factor CRS1 [Arabidopsis
thaliana]
gi|374095377|sp|Q9LF10.2|CRS1_ARATH RecName: Full=Chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic; AltName: Full=Chloroplastic RNA
splicing factor 1; AltName: Full=Protein CHLOROPLAST RNA
SPLICING 1; Flags: Precursor
gi|332004875|gb|AED92258.1| ortholog of maize chloroplast splicing factor CRS1 [Arabidopsis
thaliana]
Length = 720
Score = 325 bits (832), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 179/414 (43%), Positives = 251/414 (60%), Gaps = 39/414 (9%)
Query: 349 EADRLLDGLGPRFTDWWGYDPQPVDADLLPATVPGYRRPFRLLPYGVQPKLTNDEMTTLR 408
EADRLLDGLGPR+ DWW P PVDADLLP V GY P R P + KLT++E+T LR
Sbjct: 311 EADRLLDGLGPRYMDWWMRRPFPVDADLLPEVVNGYMTPSRRCPPNTRAKLTDEELTYLR 370
Query: 409 RLGRPLPCHFALGRNRNLQGLAAAIVKLWEKCEIAKIAVKRGAQNTNSEMMAQELKRLTG 468
+ +PLP HF LGRN LQGLA+AIVKLWEKC IAKIA+K GA NTN+E MA EL+ LTG
Sbjct: 371 NIAQPLPFHFVLGRNYGLQGLASAIVKLWEKCIIAKIAIKWGALNTNNEEMADELRYLTG 430
Query: 469 GTLLSRDREFIVFYRGKDFLPPAASSAIEERRK--HEFSTSNDSKEEPELGNRHDNSGDN 526
G L+ R++ IV YRGKDFL + +E+R + + ++K E ++ +
Sbjct: 431 GVLILRNKYLIVLYRGKDFLSDEVADLVEDRERLLSRYQHFEETKRESDIELLEVVTNGK 490
Query: 527 TQDEFGCTNDQKSTMHSEQKERRSAEVAIRRTNIRLSRVLEKKAEAEKLLAELEEE---- 582
E TN + + ++ +R+ E+ R LE +AE +L EL+ +
Sbjct: 491 QLKE---TNKSGTLLEFQELQRKFGEMD--------PRNLETEAEKARLEKELKSQEHKL 539
Query: 583 ---------------------RPEQYEVDKEGITEEERYMLRKVGLRMKAFLLMGRRGVF 621
+P + + D E +T EER LR++GL+M + L++GRRGVF
Sbjct: 540 SILKSKIEKSNMELFKLNSLWKPSEGDDDIEILTNEERECLRRIGLKMNSSLVLGRRGVF 599
Query: 622 DGTVENMHLHWKHRELVKIISKQRKIEAALQEARTLEVESGGILVAVERVNKGYAIILYR 681
G +E +H HWKHRE+ K+I+ Q+ + A+ LE ES G+L+++E++ +G+AI++YR
Sbjct: 600 FGVMEGLHQHWKHREVAKVITMQKLFSRVVYTAKALETESNGVLISIEKLKEGHAILIYR 659
Query: 682 GKNYERPAC-LRPKTLLTKREAMKRSLEAQRRQSLKLHVLELTRNIEKLKLQLV 734
GKNY+RP+ L + LLTKR+A++RS+ QR SLK + R IE LK+ LV
Sbjct: 660 GKNYKRPSSKLMAQNLLTKRKALQRSVVMQRLGSLKFFAYQRERAIEDLKVSLV 713
Score = 60.1 bits (144), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 54/95 (56%), Gaps = 4/95 (4%)
Query: 180 LSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRT 239
L+ +E LR +G+ + L +G+ G+ G++ G+H+ W+H EV K++ + T
Sbjct: 572 LTNEERECLRRIGLKMNSSLVLGRRGVFFGVMEGLHQHWKHREVAKVITMQKLFSRVVYT 631
Query: 240 HDSLERKTGGLVV----WRSGSKIILYRGADYKYP 270
+LE ++ G+++ + G I++YRG +YK P
Sbjct: 632 AKALETESNGVLISIEKLKEGHAILIYRGKNYKRP 666
Score = 54.7 bits (130), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 82/337 (24%), Positives = 135/337 (40%), Gaps = 51/337 (15%)
Query: 179 KLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCE-DLCRLNMK 237
KL+ +EL LR + L +G+ +G+ + I + W + KI + N +
Sbjct: 360 KLTDEELTYLRNIAQPLPFHFVLGRNYGLQGLASAIVKLWEKCIIAKIAIKWGALNTNNE 419
Query: 238 RTHDSLERKTGGLVVWRSGSKIILYRGADYKYPYFLADESSTDGASSDDLPNQLVDDEGL 297
D L TGG+++ R+ I+LYRG D FL+DE + +D L +
Sbjct: 420 EMADELRYLTGGVLILRNKYLIVLYRGKD-----FLSDEVAD---LVEDRERLLSRYQHF 471
Query: 298 DETKTHS--------SGADSAKPSGQSPTNKKVQQTLIHSVGSPDKLRYQLPGEAELVEE 349
+ETK S + K + +S T + Q+ L G D P E E
Sbjct: 472 EETKRESDIELLEVVTNGKQLKETNKSGTLLEFQE-LQRKFGEMD------PRNLETEAE 524
Query: 350 ADRLLDGLGPRFTDWWGYDPQPVDADLLPATVPGYRRPFRLLPYGVQPK--------LTN 401
RL L Q +L + + L +P LTN
Sbjct: 525 KARLEKEL----------KSQEHKLSILKSKIEKSNMELFKLNSLWKPSEGDDDIEILTN 574
Query: 402 DEMTTLRRLGRPLPCHFALGRNRNLQGLAAAIVKLWEKCEIAKIAVKRGAQNTNSEMM-- 459
+E LRR+G + LGR G+ + + W+ E+AK+ Q S ++
Sbjct: 575 EERECLRRIGLKMNSSLVLGRRGVFFGVMEGLHQHWKHREVAKVIT---MQKLFSRVVYT 631
Query: 460 AQELKRLTGGTLLS----RDREFIVFYRGKDFLPPAA 492
A+ L+ + G L+S ++ I+ YRGK++ P++
Sbjct: 632 AKALETESNGVLISIEKLKEGHAILIYRGKNYKRPSS 668
Score = 41.6 bits (96), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 38/67 (56%)
Query: 955 LAVGRSNIVTGVAKAIKAHFEKYPLAIVNVKGRAKGTSVQEVVAKLEEATGAVLVSQEPS 1014
+GR+ + G+A AI +EK +A + +K A T+ +E+ +L TG VL+ +
Sbjct: 380 FVLGRNYGLQGLASAIVKLWEKCIIAKIAIKWGALNTNNEEMADELRYLTGGVLILRNKY 439
Query: 1015 KVILYRG 1021
++LYRG
Sbjct: 440 LIVLYRG 446
>gi|110742047|dbj|BAE98956.1| hypothetical protein [Arabidopsis thaliana]
Length = 717
Score = 308 bits (788), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 221/592 (37%), Positives = 323/592 (54%), Gaps = 53/592 (8%)
Query: 53 LTQSETRVQNDTTSAIQRIADKLRSLGIVEQTTSKDDTLNPEPETRATDNAGE-IFIPLP 111
++ + R ++ S +++I +KL+ G +E+ +K+ E E R + E IF
Sbjct: 104 VSGDDNRSRDGDGSTMEKIVEKLKKYGYMEEVQNKE----IEQERRIEKGSVEDIFYVEE 159
Query: 112 HRIPKYRVGHTIDDSWSTPENPVPVPG-TGAAIVRYNQLNKEVGRQKWLAKNSKMNEKEK 170
++P R G T ++S EN + G G + + K+ +W AK KE
Sbjct: 160 GKLPNTRGGFT-EESLLGGENVIGSNGDVGFPWEKMSAKEKKELEAEWTAK------KEN 212
Query: 171 EVPTLAELKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCED 230
+LAE+ L ELRRLR L K++I G+T+ V+ I E+W+ AE+V++ E
Sbjct: 213 RY-SLAEMTLPESELRRLRNLTFRTASKMRIRGGGVTQVAVDAIKEKWKSAEIVRLKIEG 271
Query: 231 LCRLNMKRTHDSLERKTGGLVVWRSGSKIILYRGADYKYPYFLADESSTDGASSDDLPNQ 290
LNM++ H+ LE+KTGGLV+WRSG+ I LYRG Y+ P + ++ P +
Sbjct: 272 ASALNMRKMHEILEKKTGGLVIWRSGTSISLYRGVSYELP-----SGKWNKQRREETPPE 326
Query: 291 LVDDEGLDETKTHSSGADSAKPSGQSPTNKKVQQTLIHSVGSPDKLRYQLPGEAELVEEA 350
V E DET T +D +KV + + + + Q E +E
Sbjct: 327 AVI-ENHDETTTMVDKSD-----------EKVHLPQLEQETTSVEKKDQTSPVVEYEDEL 374
Query: 351 DRLLDGLGPRFTDWWGYDPQPVDADLLPATVPGYRRPFRLLPYGVQPKLTNDEMTTLRRL 410
D LLD LGPRF DW G +P PVDADLLP +P Y PFR+LPYGV+ L E T LRRL
Sbjct: 375 DELLDDLGPRFMDWPGDNPLPVDADLLPGAIPDYEPPFRVLPYGVRSSLGPKEATALRRL 434
Query: 411 GRPLPCHFALGRNRNLQGLAAAIVKLWEKCEIAKIAVKRGAQNTNSEMMAQELKRLTGGT 470
R +P HFALGR+R LQGLA A+V+LWEK +AKIA+KRG Q+T SE MA++LK+LTGG
Sbjct: 435 ARSIPPHFALGRSRQLQGLATAMVRLWEKSMLAKIAIKRGVQSTTSERMAEDLKKLTGGI 494
Query: 471 LLSRDREFIVFYRGKDFLPPAASSAIEERRKHEFSTSNDSKEEPEL-------------G 517
+LSR+++F+VFYRGK+FL + A+ E+ + T D +E+ L
Sbjct: 495 MLSRNKDFLVFYRGKNFLSREVADALVEQERF-VRTLQDEEEQARLRGSSALIVPSTEPA 553
Query: 518 NRHDNSG--DNTQDEFG-----CTNDQKSTMHSEQKERRSAEVAIRRTNIRLSRVLEKKA 570
N+ ++G T D G +D S ++ E E +R+ +L+ K
Sbjct: 554 NKLVSAGTLGETLDATGKWGKNLDDDDHSDEVKQEVEILRHENLVRKLERKLAFAERKLL 613
Query: 571 EAEKLLAELEE-ERPEQYEVDKEGITEEERYMLRKVGLRMKAFLLMGRRGVF 621
+AE+ LA++E +P + D E IT+EER+M RK+GL+MKAFLL+G +F
Sbjct: 614 KAERGLAKVEVCLKPAEQREDPESITDEERFMFRKLGLKMKAFLLLGFAPIF 665
Score = 42.7 bits (99), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 40/69 (57%)
Query: 953 PVLAVGRSNIVTGVAKAIKAHFEKYPLAIVNVKGRAKGTSVQEVVAKLEEATGAVLVSQE 1012
P A+GRS + G+A A+ +EK LA + +K + T+ + + L++ TG +++S+
Sbjct: 440 PHFALGRSRQLQGLATAMVRLWEKSMLAKIAIKRGVQSTTSERMAEDLKKLTGGIMLSRN 499
Query: 1013 PSKVILYRG 1021
++ YRG
Sbjct: 500 KDFLVFYRG 508
>gi|168014862|ref|XP_001759970.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162688720|gb|EDQ75095.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 512
Score = 296 bits (758), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 197/529 (37%), Positives = 280/529 (52%), Gaps = 78/529 (14%)
Query: 243 LERKTGGLVVWRSGSKIILYRGADYKYPYFLADESSTDGASSDDLPNQLVDDEGLDETKT 302
L+R TGG+V+WR G +++YRG DY P ++ + A L QL+D + DE++
Sbjct: 2 LQRLTGGIVIWREGPAVVIYRGKDY-VPVWMRKMDLREEAYRKRL--QLLDCDEEDESRQ 58
Query: 303 HSSGADSAKPSGQSPTNKKVQQTLIHSVGSPDKLRYQLPGEAELVEEADRLLDGLGPRFT 362
+ T+ Q +I E + L+D LGP+F
Sbjct: 59 LM----------EEGTSYDCQTNMIQE------------------SEIEDLMDDLGPQFV 90
Query: 363 DWWGYDPQPVDADLLPATVPGYRRPFRLLPYGVQPKLTNDEMTTLRRLGRPLPCHFALGR 422
W PVD DLL + + PFR LPYGV+P+LTN EMT +R L + LP HF LG+
Sbjct: 91 GWIEGGRAPVDGDLLVNS--NFNSPFRRLPYGVRPRLTNFEMTEMRHLAKKLPPHFVLGQ 148
Query: 423 NRNLQGLAAAIVKLWEKCEIAKIAVKRGAQNTNSEMMAQELKRLTGGTLLSRDREFIVFY 482
R L+GLA+AIVKLWEK E+AKIA+KRG ++ MA EL RLTGG L++R+ +I Y
Sbjct: 149 CRGLEGLASAIVKLWEKSEVAKIAMKRGVSRIVNDRMASELIRLTGGDLIARNMSYIALY 208
Query: 483 RGKDFLPP-----------AASSAIEERRKHEFSTSNDSKEEPELGNRHDNSGDNTQDEF 531
RG FLP A + +E+ ++ + K +L + N+ F
Sbjct: 209 RGNSFLPAIVKGTLKEKDHIARTLLEDEERNRLAAILARKAARDLARQRMQRILNSVSSF 268
Query: 532 G---CTNDQK--------STMHSEQKERRSAEVAIRRTNIR--LSRVLEKKAEAEKLLAE 578
C + S++ + ++ IR IR L+ V +K + AE+ L
Sbjct: 269 SYNFCIHRSSLKFGLFLLSSIFMKISAYMVIDIEIRFKPIRIGLNVVSQKISSAERELLN 328
Query: 579 LE-EERPEQYEVDKEGITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVENMHLHWKHREL 637
L + +P+ KE +TEEE Y LRK+GLRMK +LL+GRR VF G +ENMHLHWK R+L
Sbjct: 329 LNLKMKPKDMHASKEDVTEEEMYTLRKIGLRMKPYLLLGRREVFSGVIENMHLHWKWRQL 388
Query: 638 VKIISKQ-----RKIEAALQEARTLEVESGGILVAVERVNKGYAIILYRGKNYERPA--- 689
VKII K+ R+ + AR LE+ESGG+LV + + G AII+YRGKNY+RP
Sbjct: 389 VKIIVKKSYFMYRERDDIENIARMLEIESGGVLVGICTIPVGEAIIVYRGKNYQRPNDGI 448
Query: 690 -------CLRPKTLLTKREAMKRSLEAQRRQ-----SLKLHVLELTRNI 726
LRP LLTK++A +R + +R++ SL L++ E+ I
Sbjct: 449 SPQGHPDGLRPCGLLTKKQAWERFNQKRRKRVYFSLSLDLNMFEILSRI 497
Score = 67.0 bits (162), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 84/355 (23%), Positives = 150/355 (42%), Gaps = 37/355 (10%)
Query: 159 LAKNSKMNEKEKEVPTLAELKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERW 218
L NS N + +P +L+ E+ +R L L +G+ EG+ + I + W
Sbjct: 104 LLVNSNFNSPFRRLPYGVRPRLTNFEMTEMRHLAKKLPPHFVLGQCRGLEGLASAIVKLW 163
Query: 219 RHAEVVKIVCE-DLCRLNMKRTHDSLERKTGGLVVWRSGSKIILYRGADYKYPYFLADES 277
+EV KI + + R+ R L R TGG ++ R+ S I LYRG FL
Sbjct: 164 EKSEVAKIAMKRGVSRIVNDRMASELIRLTGGDLIARNMSYIALYRGNS-----FLPAIV 218
Query: 278 STDGASSDDLPNQLVDDEGLDETKTHSSGADSAKPSGQSPTNKKVQQTLIHSVGSPDKLR 337
D + L++DE + + A A+ + + +++Q+ L +SV S
Sbjct: 219 KGTLKEKDHIARTLLEDE-----ERNRLAAILARKAARDLARQRMQRIL-NSVSS---FS 269
Query: 338 YQLPGEAELVEEADRLLDGLGPRFTDWWGYD------PQPVDADLLPATVPGYRRPFRLL 391
Y ++ LL + + + + D P + +++ + R L
Sbjct: 270 YNFCIHRSSLKFGLFLLSSIFMKISAYMVIDIEIRFKPIRIGLNVVSQKISSAERELLNL 329
Query: 392 PYGVQPK--------LTNDEMTTLRRLGRPLPCHFALGRNRNLQGLAAAIVKLWEKCEIA 443
++PK +T +EM TLR++G + + LGR G+ + W+ ++
Sbjct: 330 NLKMKPKDMHASKEDVTEEEMYTLRKIGLRMKPYLLLGRREVFSGVIENMHLHWKWRQLV 389
Query: 444 KIAVKRGA----QNTNSEMMAQELKRLTGGTLLSRDR----EFIVFYRGKDFLPP 490
KI VK+ + + E +A+ L+ +GG L+ E I+ YRGK++ P
Sbjct: 390 KIIVKKSYFMYRERDDIENIARMLEIESGGVLVGICTIPVGEAIIVYRGKNYQRP 444
Score = 45.4 bits (106), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 58/120 (48%), Gaps = 21/120 (17%)
Query: 183 KELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRTHDS 242
+E+ LR +G+ ++ L +G+ + G++ +H W+ ++VKI+ + M R D
Sbjct: 348 EEMYTLRKIGLRMKPYLLLGRREVFSGVIENMHLHWKWRQLVKIIVKK--SYFMYRERDD 405
Query: 243 -------LERKTGGLVVWRS----GSKIILYRGADYKYPYFLADESSTDGASSDDLPNQL 291
LE ++GG++V G II+YRG +Y+ P DG S P+ L
Sbjct: 406 IENIARMLEIESGGVLVGICTIPVGEAIIVYRGKNYQRP--------NDGISPQGHPDGL 457
>gi|326492864|dbj|BAJ90288.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 630
Score = 259 bits (662), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 181/473 (38%), Positives = 243/473 (51%), Gaps = 35/473 (7%)
Query: 167 EKEKEVPTLAELKLSGKELRRLRTLGIGLRKK-LKIGKAGITEGIVNGIHERWRHA-EVV 224
+K+ PT AE L EL RLR G L+ KAG+T+ +V + W E+
Sbjct: 141 QKKARQPTPAERLLDPAELDRLRRAARGTGDGWLRAKKAGVTDEVVEDVCRVWSGGQELA 200
Query: 225 KIVCEDLCRLNMKRTHDSLERKTGGLVVWRSGSKIILYRGADYKYPYFLADESSTDGASS 284
+ + R M R + LE K+GGLVVW G +YRG+ Y L + + +
Sbjct: 201 AVRVVEPLRRCMDRAREILEIKSGGLVVWTKGDVHFVYRGSSY-----LENIKHRQKSIA 255
Query: 285 DDLPNQLVDDEGLDETKTHSSGADSAKPSGQSPTNKKVQQTLIHSVGSPDKLRYQLPGEA 344
D Q V E +A+PS N S Y+ P E
Sbjct: 256 DI---QRVPLEKCTAPGPQWKHESNAEPSTNH--NDDAHGVFRGIDPSLAVHAYEEPVEG 310
Query: 345 ELVE-EADRLLDGLGPRFTDWWGYDPQPVDADLLPATVPGYRRPFRLLPYGVQPKLTNDE 403
L E E +RLLD LGPRF DWW P PVDADLLP VPG++ PFR P GV+P L ++E
Sbjct: 311 TLYEREVNRLLDSLGPRFVDWWWNTPLPVDADLLPEVVPGFKTPFRQCPPGVRPTLADEE 370
Query: 404 MTTLRRLGRPLPCHFALGRNRNLQGLAAAIVKLWEKCEIAKIAVKRGAQNTNSEMMAQEL 463
+T LR+L RPLP HFALGRN LQGLAAA++KLWEK IAKIAVK G QNTN+E MA L
Sbjct: 371 LTYLRKLARPLPTHFALGRNTRLQGLAAAVLKLWEKSLIAKIAVKVGIQNTNNEQMAWNL 430
Query: 464 KRLTGGTLLSRDREFIVFYRGKDFLPPAASSAIEERRKHEFSTSNDSKEEPELGNRHDN- 522
K LTGGT++ R+++F++ YRGKDFLP ++ E+ + + KEE D+
Sbjct: 431 KHLTGGTIILRNKDFVILYRGKDFLPGGVKQSVIEQEARVY--AQQVKEEEARLMVMDSL 488
Query: 523 -------SGDNTQDEFGCTNDQKSTMHSEQKERRSAEVAIRRTNIRLSR----------V 565
S +++ F D + E E A + + RL + +
Sbjct: 489 KMFAGLPSEESSVGSFRGYQDFQLNHVQETTENNMALIELEAEKHRLEKELKDQERRLFI 548
Query: 566 LEKKAE-AEKLLAELEEE-RPEQYEVDKEGITEEERYMLRKVGLRMKAFLLMG 616
L KK E + + LA+L P + DKE +TEEER + RK+GL+M +L+G
Sbjct: 549 LTKKIERSNEALAKLHNSWNPSEQSADKELLTEEERMIFRKIGLKMDEHVLLG 601
Score = 40.8 bits (94), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 43/78 (55%), Gaps = 3/78 (3%)
Query: 947 LRMKKRPV---LAVGRSNIVTGVAKAIKAHFEKYPLAIVNVKGRAKGTSVQEVVAKLEEA 1003
LR RP+ A+GR+ + G+A A+ +EK +A + VK + T+ +++ L+
Sbjct: 374 LRKLARPLPTHFALGRNTRLQGLAAAVLKLWEKSLIAKIAVKVGIQNTNNEQMAWNLKHL 433
Query: 1004 TGAVLVSQEPSKVILYRG 1021
TG ++ + VILYRG
Sbjct: 434 TGGTIILRNKDFVILYRG 451
>gi|414870653|tpg|DAA49210.1| TPA: chloroplast RNA splicing1 [Zea mays]
Length = 467
Score = 210 bits (535), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 128/301 (42%), Positives = 160/301 (53%), Gaps = 43/301 (14%)
Query: 167 EKEKEVPTLAELKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAE---V 223
EK+ PT AE +L EL RLR L G+ + + KAG+T+ +V + W E
Sbjct: 157 EKKPREPTRAETELETHELHRLRRLARGIGRWARAKKAGVTDEVVKEVRREWASGEELAA 216
Query: 224 VKIVCEDLCRLNMKRTHDSLERKTGGLVVWRSGSKIILYRGADYKYPYFLADESSTDGAS 283
V+IV + R +M R + LE KTGGLVVW G +YRG+ Y+ +
Sbjct: 217 VRIV--EPLRRSMDRAREILEIKTGGLVVWTKGDMHFVYRGSKYQ----------QNAKH 264
Query: 284 SDDLPNQLVDDEGLDETKTHSSGADSAKPSGQSPTNKKVQQTLIHSVGSPDKLRYQLPGE 343
S + D+ E G +P V+ TL
Sbjct: 265 SHTFLTNVHKDDAFQENDQSICGQKDEEP---------VKGTLYE--------------- 300
Query: 344 AELVEEADRLLDGLGPRFTDWWGYDPQPVDADLLPATVPGYRRPFRLLPYGVQPKLTNDE 403
E +RLLD LGPRF DWW P PVDADLLP VPG++ P+RL P GV+P L ++E
Sbjct: 301 ----REVNRLLDTLGPRFVDWWWDTPLPVDADLLPEFVPGFKTPYRLCPPGVRPTLADEE 356
Query: 404 MTTLRRLGRPLPCHFALGRNRNLQGLAAAIVKLWEKCEIAKIAVKRGAQNTNSEMMAQEL 463
+T LR+L R LP HFALGRN LQGLAAAI+KLWEK IAKIAVK G QNTN+E MA L
Sbjct: 357 LTYLRKLARLLPTHFALGRNTRLQGLAAAILKLWEKSLIAKIAVKIGIQNTNNEQMAWNL 416
Query: 464 K 464
K
Sbjct: 417 K 417
>gi|414870651|tpg|DAA49208.1| TPA: chloroplast RNA splicing1 [Zea mays]
Length = 496
Score = 208 bits (530), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 130/308 (42%), Positives = 171/308 (55%), Gaps = 28/308 (9%)
Query: 167 EKEKEVPTLAELKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAE---V 223
EK+ PT AE +L EL RLR L G+ + + KAG+T+ +V + W E
Sbjct: 157 EKKPREPTRAETELETHELHRLRRLARGIGRWARAKKAGVTDEVVKEVRREWASGEELAA 216
Query: 224 VKIVCEDLCRLNMKRTHDSLERKTGGLVVWRSGSKIILYRGADY----KYPYFLADESST 279
V+IV + R +M R + LE KTGGLVVW G +YRG+ Y K+ +
Sbjct: 217 VRIV--EPLRRSMDRAREILEIKTGGLVVWTKGDMHFVYRGSKYQQNAKHSHTFLTNVHK 274
Query: 280 DGASSDDLPNQLVDDEGLDETKTHSSGA--DSAKPSGQSPTNKKVQQTLIHSVGSPDKLR 337
++ L+ + ++ G D+ + + QS +K ++
Sbjct: 275 GYLVKHNVHTTLLKYGSIGPVLINNYGEADDAFQENDQSICGQKDEE------------- 321
Query: 338 YQLPGEAELVE-EADRLLDGLGPRFTDWWGYDPQPVDADLLPATVPGYRRPFRLLPYGVQ 396
P + L E E +RLLD LGPRF DWW P PVDADLLP VPG++ P+RL P GV+
Sbjct: 322 ---PVKGTLYEREVNRLLDTLGPRFVDWWWDTPLPVDADLLPEFVPGFKTPYRLCPPGVR 378
Query: 397 PKLTNDEMTTLRRLGRPLPCHFALGRNRNLQGLAAAIVKLWEKCEIAKIAVKRGAQNTNS 456
P L ++E+T LR+L R LP HFALGRN LQGLAAAI+KLWEK IAKIAVK G QNTN+
Sbjct: 379 PTLADEELTYLRKLARLLPTHFALGRNTRLQGLAAAILKLWEKSLIAKIAVKIGIQNTNN 438
Query: 457 EMMAQELK 464
E MA LK
Sbjct: 439 EQMAWNLK 446
>gi|357516865|ref|XP_003628721.1| Chloroplastic group IIA intron splicing facilitator CRS1 [Medicago
truncatula]
gi|355522743|gb|AET03197.1| Chloroplastic group IIA intron splicing facilitator CRS1 [Medicago
truncatula]
Length = 387
Score = 194 bits (492), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 113/286 (39%), Positives = 153/286 (53%), Gaps = 46/286 (16%)
Query: 191 LGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRTHDSLERKTGGL 250
+ + + ++ +G AGIT +V+ IHE+W EVVK + NMKR + LE KTGG+
Sbjct: 1 MALMMVERFGVGVAGITHELVDAIHEKWMVDEVVKFKFDSPLSANMKRANQILESKTGGI 60
Query: 251 VVWRSGSKIILYRGADYKYPYFLADESSTDGASSDDLPNQLVDDEGLDETKTHSSGADSA 310
VVWR GS I+LYRG YK P ES T K +++ ++
Sbjct: 61 VVWRLGSSIVLYRGMSYKLP---CVESYT---------------------KVYNANENAV 96
Query: 311 KPSGQSPTNKKVQQTLIHSVGSPDKLRYQLPGEAELVEEA------------DRLLDGLG 358
S + V+ ++ VG + AE +++ + LLD LG
Sbjct: 97 DNSVDVRSGSSVEVSVKVMVGPAESFNRD---SAEYLKDMSEEEESMESIKLNLLLDELG 153
Query: 359 PRFTDWWGYDPQPVDADLLPATVPGYRRPFRLLPYGVQPKLTNDEMTTLRRLGRPLPCHF 418
PRF DW G +P VDAD LP VPGY+ PFRLLPYGV+P L+N EMT +RR+ R HF
Sbjct: 154 PRFKDWTGREPLTVDADQLPVVVPGYKTPFRLLPYGVKPCLSNKEMTVMRRIARRTALHF 213
Query: 419 ALGRNRNLQGLAAAIVKLWEKCEIAKIAVKRGAQNTNSEMMAQELK 464
AL GLA AIVKLWE +AKIA++ G T+++ MA+ELK
Sbjct: 214 AL-------GLARAIVKLWETSAVAKIAIRHGVPYTSNDRMAEELK 252
>gi|167998334|ref|XP_001751873.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162696971|gb|EDQ83308.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 590
Score = 186 bits (473), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 113/225 (50%), Positives = 149/225 (66%), Gaps = 10/225 (4%)
Query: 561 RLSRVLEKKAEAEKLLAELE-EERPEQYEVDKEGITEEERYMLRKVGLRMKAFLLMG--- 616
RLS V KK EK LA+L+ + + KE I++EERYM K+GLRM+A LLMG
Sbjct: 113 RLSLVARKKKYVEKELAKLDGQMKLADAPPAKEQISDEERYMFMKLGLRMRARLLMGKLS 172
Query: 617 --RRGVFDGTVENMHLHWKHRELVKIISKQRKIEAALQEARTLEVESGGILVAVERVNKG 674
RRGVFDG VENMHLHWKHRELVK+I K EA Q A+ LE+ESGG+LV + KG
Sbjct: 173 SGRRGVFDGVVENMHLHWKHRELVKVIFKGPIFEAE-QTAKILEMESGGVLVGIVTTTKG 231
Query: 675 YAIILYRGKNYERPACLRPKTLLTKREAMKRSLEAQRRQSLKLHVLELTRNIEKLKLQLV 734
AII YRGKNY+RP+ LRP+ LL+KR+A +RSLE QR++SL+ H+L+L + I KL++ L
Sbjct: 232 QAIIFYRGKNYQRPSELRPRHLLSKRQAYERSLEMQRKRSLEQHMLKLEKEIGKLQVGLY 291
Query: 735 KDKEANSLETIDESILPLVKEEIGDMQP---AECMRSDTSHEVNV 776
+ E NS ++E L + E +G + E RSD ++ N+
Sbjct: 292 ETGEGNSGLEMEEKNLLALSEPLGTVLEDFDDEEFRSDENYNENL 336
Score = 108 bits (269), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/95 (54%), Positives = 75/95 (78%)
Query: 930 RAIQLSNRDRLLLRKQALRMKKRPVLAVGRSNIVTGVAKAIKAHFEKYPLAIVNVKGRAK 989
+A L+ ++R+ LR++AL+ + +G+SN+V G+AKAI+ +F+K P AIV VKGRAK
Sbjct: 362 KAQPLTIKERIRLRQEALKQSDPMHINIGKSNMVAGLAKAIRLYFQKQPFAIVGVKGRAK 421
Query: 990 GTSVQEVVAKLEEATGAVLVSQEPSKVILYRGWGA 1024
T V+E++ +LEEATGAVLVS+EP+K+ILYRGW A
Sbjct: 422 DTPVEEIIQQLEEATGAVLVSREPNKLILYRGWPA 456
Score = 72.8 bits (177), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 88/341 (25%), Positives = 143/341 (41%), Gaps = 62/341 (18%)
Query: 176 AELKLSGKELRRLRTLGIGLRKKLKIGKA-----GITEGIVNGIHERWRHAEVVKIVCED 230
A+ ++S +E LG+ +R +L +GK G+ +G+V +H W+H E+VK++ +
Sbjct: 143 AKEQISDEERYMFMKLGLRMRARLLMGKLSSGRRGVFDGVVENMHLHWKHRELVKVIFKG 202
Query: 231 LCRLNMKRTHDSLERKTGGLVVW----RSGSKIILYRGADYKYPYFL----------ADE 276
++T LE ++GG++V G II YRG +Y+ P L A E
Sbjct: 203 PI-FEAEQTAKILEMESGGVLVGIVTTTKGQAIIFYRGKNYQRPSELRPRHLLSKRQAYE 261
Query: 277 SSTDGASSDDLPNQLVDDE--------GLDETKTHSSGADSAKP---SGQSPTNKKVQQT 325
S + L ++ E GL ET +SG + + + P ++
Sbjct: 262 RSLEMQRKRSLEQHMLKLEKEIGKLQVGLYETGEGNSGLEMEEKNLLALSEPLGTVLEDF 321
Query: 326 LIHSVGSPDKLRYQLPGEAELVEEADRLLDGLGPRFTDWWGYDPQPVDADLLPATVPGYR 385
S + L + E RF W P P L P
Sbjct: 322 DDEEFRSDENYNENLADDIE--------------RF-GWKREKPNPRGVVLDPI------ 360
Query: 386 RPFRLLPYGVQPKLTNDEMTTLRR--LGRPLPCHFALGRNRNLQGLAAAIVKLWEKCEIA 443
F+ P LT E LR+ L + P H +G++ + GLA AI ++K A
Sbjct: 361 --FKAQP------LTIKERIRLRQEALKQSDPMHINIGKSNMVAGLAKAIRLYFQKQPFA 412
Query: 444 KIAVKRGAQNTNSEMMAQELKRLTGGTLLSRDREFIVFYRG 484
+ VK A++T E + Q+L+ TG L+SR+ ++ YRG
Sbjct: 413 IVGVKGRAKDTPVEEIIQQLEEATGAVLVSREPNKLILYRG 453
>gi|388514061|gb|AFK45092.1| unknown [Lotus japonicus]
Length = 161
Score = 184 bits (467), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 94/139 (67%), Positives = 114/139 (82%), Gaps = 5/139 (3%)
Query: 929 SRAIQLSNRDRLLLRKQALRMKKRPVLAVGRSNIVTGVAKAIKAHFEKYPLAIVNVKGRA 988
SR++ LSNR+RLLLRKQAL+MKKRPVLA+G+SN V+G+AKAIK HF+K+ LAIVNVKGRA
Sbjct: 28 SRSVFLSNRERLLLRKQALQMKKRPVLAIGKSNTVSGIAKAIKTHFQKHSLAIVNVKGRA 87
Query: 989 KGTSVQEVVAKLEEATGAVLVSQEPSKVILYRGWGAEDESSPRGRQNSRAKPSIVRDVRP 1048
KGTSVQEVV KLE+ATGAVLVSQEPSKVILYRGWGA ++ N + ++++
Sbjct: 88 KGTSVQEVVFKLEQATGAVLVSQEPSKVILYRGWGAGEKPG-----NGKKVNEMIKEEEA 142
Query: 1049 WPAVSRELLAAIKLECGLQ 1067
P VS ELL AI++ECGLQ
Sbjct: 143 KPIVSPELLEAIRVECGLQ 161
Score = 43.5 bits (101), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 51/91 (56%), Gaps = 8/91 (8%)
Query: 399 LTNDEMTTLRRLG-----RPLPCHFALGRNRNLQGLAAAIVKLWEKCEIAKIAVKRGAQN 453
L+N E LR+ RP+ A+G++ + G+A AI ++K +A + VK A+
Sbjct: 33 LSNRERLLLRKQALQMKKRPV---LAIGKSNTVSGIAKAIKTHFQKHSLAIVNVKGRAKG 89
Query: 454 TNSEMMAQELKRLTGGTLLSRDREFIVFYRG 484
T+ + + +L++ TG L+S++ ++ YRG
Sbjct: 90 TSVQEVVFKLEQATGAVLVSQEPSKVILYRG 120
>gi|9837552|gb|AAG00596.1|AF290415_1 CRS1 [Zea mays]
Length = 267
Score = 183 bits (464), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 112/255 (43%), Positives = 135/255 (52%), Gaps = 45/255 (17%)
Query: 215 HER--WRHAE---VVKIVCEDLCRLNMKRTHDSLERKTGGLVVWRSGSKIILYRGADYKY 269
HER W E V+IV + R +M R + LE KTGGLVVW G +YRG+ Y+
Sbjct: 3 HERREWASGEELAAVRIV--EPLRRSMDRAREILEIKTGGLVVWTKGDMHFVYRGSKYQ- 59
Query: 270 PYFLADESSTDGASSDDLPNQLVDDEGLDETKTHSSGADSAKPSGQSPTNKKVQQTLIHS 329
+ S + D+ E G +P V+ TL
Sbjct: 60 ---------QNAKHSHTFLTNVHKDDAFQENDQSICGQKDEEP---------VKGTLYE- 100
Query: 330 VGSPDKLRYQLPGEAELVEEADRLLDGLGPRFTDWWGYDPQPVDADLLPATVPGYRRPFR 389
E +RLLD LGPRF DWW P PVDADLLP VPG++ P+R
Sbjct: 101 ------------------REVNRLLDTLGPRFVDWWWDTPLPVDADLLPEFVPGFKTPYR 142
Query: 390 LLPYGVQPKLTNDEMTTLRRLGRPLPCHFALGRNRNLQGLAAAIVKLWEKCEIAKIAVKR 449
L P GV+P L ++E+T LR+L R LP HFALGRN LQGLAAAI+KLWEK IAKIAVK
Sbjct: 143 LCPPGVRPTLADEELTYLRKLARLLPTHFALGRNTRLQGLAAAILKLWEKSLIAKIAVKI 202
Query: 450 GAQNTNSEMMAQELK 464
G QNTN+E MA LK
Sbjct: 203 GIQNTNNEQMAWNLK 217
>gi|413946392|gb|AFW79041.1| hypothetical protein ZEAMMB73_840751 [Zea mays]
Length = 197
Score = 179 bits (455), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 83/146 (56%), Positives = 114/146 (78%), Gaps = 1/146 (0%)
Query: 594 ITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVENMHLHWKHRELVKIISKQRKIEAALQE 653
IT+EE+ + R++GLR+KA+L +G RGVFDG +ENMHLHWKHRE+VK+ISKQ+ + +
Sbjct: 2 ITDEEKSVFRRIGLRLKAYLPLGVRGVFDGVIENMHLHWKHREVVKLISKQKTLSFVEET 61
Query: 654 ARTLEVESGGILVAVERVNKGYAIILYRGKNYERPACLRPKTLLTKREAMKRSLEAQRRQ 713
AR L ESGGILVA+ERV KGYA+I YRGKNY RP +RP+ LLTK +A+KR++ QR +
Sbjct: 62 ARLLAYESGGILVAIERVPKGYALIFYRGKNYRRPINIRPRNLLTKAKALKRAVAMQRHE 121
Query: 714 SLKLHVLELTRNIEKLKLQL-VKDKE 738
+L H+ +L NI+++KL L ++D E
Sbjct: 122 ALSQHIDQLESNIKQMKLDLGIEDYE 147
Score = 54.3 bits (129), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 48/87 (55%), Gaps = 4/87 (4%)
Query: 188 LRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRTHDSLERKT 247
R +G+ L+ L +G G+ +G++ +H W+H EVVK++ + ++ T L ++
Sbjct: 10 FRRIGLRLKAYLPLGVRGVFDGVIENMHLHWKHREVVKLISKQKTLSFVEETARLLAYES 69
Query: 248 GGLVVWR----SGSKIILYRGADYKYP 270
GG++V G +I YRG +Y+ P
Sbjct: 70 GGILVAIERVPKGYALIFYRGKNYRRP 96
>gi|413946391|gb|AFW79040.1| hypothetical protein ZEAMMB73_840751 [Zea mays]
Length = 266
Score = 175 bits (443), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 81/142 (57%), Positives = 112/142 (78%)
Query: 594 ITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVENMHLHWKHRELVKIISKQRKIEAALQE 653
IT+EE+ + R++GLR+KA+L +G RGVFDG +ENMHLHWKHRE+VK+ISKQ+ + +
Sbjct: 2 ITDEEKSVFRRIGLRLKAYLPLGVRGVFDGVIENMHLHWKHREVVKLISKQKTLSFVEET 61
Query: 654 ARTLEVESGGILVAVERVNKGYAIILYRGKNYERPACLRPKTLLTKREAMKRSLEAQRRQ 713
AR L ESGGILVA+ERV KGYA+I YRGKNY RP +RP+ LLTK +A+KR++ QR +
Sbjct: 62 ARLLAYESGGILVAIERVPKGYALIFYRGKNYRRPINIRPRNLLTKAKALKRAVAMQRHE 121
Query: 714 SLKLHVLELTRNIEKLKLQLVK 735
+L H+ +L NI+++KL L++
Sbjct: 122 ALSQHIDQLESNIKQMKLDLLR 143
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 48/87 (55%), Gaps = 4/87 (4%)
Query: 188 LRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRTHDSLERKT 247
R +G+ L+ L +G G+ +G++ +H W+H EVVK++ + ++ T L ++
Sbjct: 10 FRRIGLRLKAYLPLGVRGVFDGVIENMHLHWKHREVVKLISKQKTLSFVEETARLLAYES 69
Query: 248 GGLVVWR----SGSKIILYRGADYKYP 270
GG++V G +I YRG +Y+ P
Sbjct: 70 GGILVAIERVPKGYALIFYRGKNYRRP 96
>gi|326521980|dbj|BAK04118.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 232
Score = 175 bits (443), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 81/144 (56%), Positives = 112/144 (77%)
Query: 590 DKEGITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVENMHLHWKHRELVKIISKQRKIEA 649
D+E IT EER + R++GL+MKA+L +G RGVFDG +ENMHLHWKHRE+VK+I+KQ+ +
Sbjct: 43 DREMITAEERSVFRRIGLKMKAYLPVGIRGVFDGVIENMHLHWKHREVVKLITKQKTLAF 102
Query: 650 ALQEARTLEVESGGILVAVERVNKGYAIILYRGKNYERPACLRPKTLLTKREAMKRSLEA 709
+ AR LE ESGGILVA+ERV KG+A+I YRGKNY RP +RP+ LLTK +A+KR++
Sbjct: 103 VEETARLLEYESGGILVAIERVPKGHALIFYRGKNYRRPINIRPRNLLTKAKALKRAVAM 162
Query: 710 QRRQSLKLHVLELTRNIEKLKLQL 733
QR ++L H+ +L N++++K L
Sbjct: 163 QRHEALSQHIDQLEINMKQMKRDL 186
Score = 56.2 bits (134), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 53/95 (55%), Gaps = 4/95 (4%)
Query: 180 LSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRT 239
++ +E R +G+ ++ L +G G+ +G++ +H W+H EVVK++ + ++ T
Sbjct: 47 ITAEERSVFRRIGLKMKAYLPVGIRGVFDGVIENMHLHWKHREVVKLITKQKTLAFVEET 106
Query: 240 HDSLERKTGGLVVWR----SGSKIILYRGADYKYP 270
LE ++GG++V G +I YRG +Y+ P
Sbjct: 107 ARLLEYESGGILVAIERVPKGHALIFYRGKNYRRP 141
>gi|413946390|gb|AFW79039.1| hypothetical protein ZEAMMB73_840751 [Zea mays]
Length = 132
Score = 163 bits (412), Expect = 6e-37, Method: Composition-based stats.
Identities = 77/134 (57%), Positives = 102/134 (76%), Gaps = 6/134 (4%)
Query: 594 ITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVENMHLHWKHRELVKIISKQRKIEAALQE 653
IT+EE+ + R++GLR+KA+L +G RGVFDG +ENMHLHWKHRE+VK+ISKQ+ + +
Sbjct: 2 ITDEEKSVFRRIGLRLKAYLPLGVRGVFDGVIENMHLHWKHREVVKLISKQKTLSFVEET 61
Query: 654 ARTLEVESGGILVAVERVNKGYAIILYRGKNYERPACLRPKTLLTKREAMKRSLEAQRRQ 713
AR L ESGGILVA+ERV KGYA+I YRGKNY RP +RP+ LLTK +A+KR++ QR
Sbjct: 62 ARLLAYESGGILVAIERVPKGYALIFYRGKNYRRPINIRPRNLLTKAKALKRAVAMQR-- 119
Query: 714 SLKLHVLELTRNIE 727
H + L+ N+E
Sbjct: 120 ----HEVCLSWNVE 129
Score = 52.8 bits (125), Expect = 0.001, Method: Composition-based stats.
Identities = 27/95 (28%), Positives = 52/95 (54%), Gaps = 4/95 (4%)
Query: 180 LSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRT 239
++ +E R +G+ L+ L +G G+ +G++ +H W+H EVVK++ + ++ T
Sbjct: 2 ITDEEKSVFRRIGLRLKAYLPLGVRGVFDGVIENMHLHWKHREVVKLISKQKTLSFVEET 61
Query: 240 HDSLERKTGGLVVW----RSGSKIILYRGADYKYP 270
L ++GG++V G +I YRG +Y+ P
Sbjct: 62 ARLLAYESGGILVAIERVPKGYALIFYRGKNYRRP 96
>gi|413918581|gb|AFW58513.1| hypothetical protein ZEAMMB73_947708, partial [Zea mays]
Length = 208
Score = 147 bits (370), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 85/179 (47%), Positives = 115/179 (64%), Gaps = 18/179 (10%)
Query: 66 SAIQRIADKLRSLGIVEQTTSKDDTLNPEPETRATDNAGEIFIPLPHRIPKYRVGHTIDD 125
SA++RI+DKLRSLG +E T S+ T P ++ + GEIF+P P ++P++RVG T+D
Sbjct: 47 SALRRISDKLRSLGYLE-TVSEPPTPAPN-KSGDAPSPGEIFVPTPAQLPRHRVGSTLDP 104
Query: 126 SWSTPENPVPVPGTGAAIVRYNQLNKEVGRQKWLAKNSKMNEKEKEVPTLAELKLSGKEL 185
SW+T G G A RQ+ + + P+ AEL L EL
Sbjct: 105 SWAT--------GDGEA--------SSTSRQRRRGRGRDASGSPSAPPSAAELALPRDEL 148
Query: 186 RRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRTHDSLE 244
RRL+ +GI +RK+LK+GKAGITEGIVNGIHERWR+AEVVK+ CED+ +NM+RTH+ LE
Sbjct: 149 RRLQGIGIRVRKRLKVGKAGITEGIVNGIHERWRNAEVVKLRCEDVWAMNMRRTHEILE 207
>gi|147838476|emb|CAN69859.1| hypothetical protein VITISV_037991 [Vitis vinifera]
Length = 371
Score = 143 bits (360), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 67/119 (56%), Positives = 86/119 (72%)
Query: 615 MGRRGVFDGTVENMHLHWKHRELVKIISKQRKIEAALQEARTLEVESGGILVAVERVNKG 674
GRRGVFDG +E +H HWKHRE+VK+I+ QR L A+ LE ESGG+LV+++++ +G
Sbjct: 118 FGRRGVFDGVIEGLHQHWKHREIVKVITMQRSFSQVLYTAKLLESESGGVLVSIDKLKEG 177
Query: 675 YAIILYRGKNYERPACLRPKTLLTKREAMKRSLEAQRRQSLKLHVLELTRNIEKLKLQL 733
+AII+YRGKNY RP L PK LLTKREA+ RSLE QR SLK + + I LKL+L
Sbjct: 178 HAIIIYRGKNYRRPIKLVPKNLLTKREALNRSLEMQRIGSLKFFAYQRQQAISDLKLKL 236
Score = 55.8 bits (133), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 44/74 (59%), Gaps = 4/74 (5%)
Query: 201 IGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRTHDSLERKTGGLVV----WRSG 256
G+ G+ +G++ G+H+ W+H E+VK++ + T LE ++GG++V + G
Sbjct: 118 FGRRGVFDGVIEGLHQHWKHREIVKVITMQRSFSQVLYTAKLLESESGGVLVSIDKLKEG 177
Query: 257 SKIILYRGADYKYP 270
II+YRG +Y+ P
Sbjct: 178 HAIIIYRGKNYRRP 191
>gi|297612106|ref|NP_001068192.2| Os11g0592400 [Oryza sativa Japonica Group]
gi|255680227|dbj|BAF28555.2| Os11g0592400, partial [Oryza sativa Japonica Group]
Length = 108
Score = 136 bits (343), Expect = 6e-29, Method: Composition-based stats.
Identities = 63/102 (61%), Positives = 84/102 (82%)
Query: 614 LMGRRGVFDGTVENMHLHWKHRELVKIISKQRKIEAALQEARTLEVESGGILVAVERVNK 673
L GRRGVFDGT+ENMHLHWK+RELVKI+ K + + A +LE ESGGILV+V++V+K
Sbjct: 6 LSGRRGVFDGTIENMHLHWKYRELVKILVKAKSFGDVKKIALSLEAESGGILVSVDKVSK 65
Query: 674 GYAIILYRGKNYERPACLRPKTLLTKREAMKRSLEAQRRQSL 715
GYAI+++RGK+Y RP+ LRP+ LL+KR+A+ RS+E QRR+ L
Sbjct: 66 GYAIVVFRGKDYARPSKLRPRNLLSKRKALARSIEIQRREVL 107
Score = 45.8 bits (107), Expect = 0.12, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 43/73 (58%), Gaps = 4/73 (5%)
Query: 202 GKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRTHDSLERKTGGLVVW----RSGS 257
G+ G+ +G + +H W++ E+VKI+ + ++K+ SLE ++GG++V G
Sbjct: 8 GRRGVFDGTIENMHLHWKYRELVKILVKAKSFGDVKKIALSLEAESGGILVSVDKVSKGY 67
Query: 258 KIILYRGADYKYP 270
I+++RG DY P
Sbjct: 68 AIVVFRGKDYARP 80
>gi|326507158|dbj|BAJ95656.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 115
Score = 114 bits (286), Expect = 2e-22, Method: Composition-based stats.
Identities = 51/85 (60%), Positives = 61/85 (71%), Gaps = 1/85 (1%)
Query: 338 YQLPGEAELVE-EADRLLDGLGPRFTDWWGYDPQPVDADLLPATVPGYRRPFRLLPYGVQ 396
Y+ P E + E E +RLLD LGPRF DWW P PVDADLLP VPG++ PFR P GV+
Sbjct: 11 YEEPVEGTVYEREVNRLLDSLGPRFVDWWWNTPLPVDADLLPEVVPGFKTPFRQCPPGVR 70
Query: 397 PKLTNDEMTTLRRLGRPLPCHFALG 421
P L ++E+T LR+L RPLP HFALG
Sbjct: 71 PTLADEELTYLRKLARPLPTHFALG 95
>gi|326494498|dbj|BAJ90518.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326502328|dbj|BAJ95227.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 95
Score = 112 bits (279), Expect = 1e-21, Method: Composition-based stats.
Identities = 51/85 (60%), Positives = 61/85 (71%), Gaps = 1/85 (1%)
Query: 338 YQLPGEAELVE-EADRLLDGLGPRFTDWWGYDPQPVDADLLPATVPGYRRPFRLLPYGVQ 396
Y+ P E + E E +RLLD LGPRF DWW P PVDADLLP VPG++ PFR P GV+
Sbjct: 11 YEEPVEGTVYEREVNRLLDSLGPRFVDWWWNTPLPVDADLLPEVVPGFKTPFRQCPPGVR 70
Query: 397 PKLTNDEMTTLRRLGRPLPCHFALG 421
P L ++E+T LR+L RPLP HFALG
Sbjct: 71 PTLADEELTYLRKLARPLPTHFALG 95
>gi|326506924|dbj|BAJ91503.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 118
Score = 111 bits (277), Expect = 2e-21, Method: Composition-based stats.
Identities = 50/84 (59%), Positives = 60/84 (71%), Gaps = 1/84 (1%)
Query: 338 YQLPGEAELVE-EADRLLDGLGPRFTDWWGYDPQPVDADLLPATVPGYRRPFRLLPYGVQ 396
Y+ P E + E E +RLLD LGPRF DWW P PVDADLLP VPG++ PFR P GV+
Sbjct: 11 YEEPVEGTVYEREVNRLLDSLGPRFVDWWWNTPLPVDADLLPEVVPGFKTPFRQCPPGVR 70
Query: 397 PKLTNDEMTTLRRLGRPLPCHFAL 420
P L ++E+T LR+L RPLP HFAL
Sbjct: 71 PTLADEELTYLRKLARPLPTHFAL 94
>gi|357167884|ref|XP_003581379.1| PREDICTED: uncharacterized CRM domain-containing protein At3g25440,
chloroplastic-like [Brachypodium distachyon]
Length = 485
Score = 106 bits (265), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 76/253 (30%), Positives = 131/253 (51%), Gaps = 26/253 (10%)
Query: 566 LEKKAEAEKLLAEL---EEERPEQYEVDKEGITEEERYMLRKVGLRMKAFLLMGRRGVFD 622
L +K E E+LLA L E P + D E +T EE + K+G + K ++ +GRRG++
Sbjct: 156 LARKKE-ERLLAALKKIEPNDPSEPTHDPEVLTPEEHFYFLKMGQKSKNYVPVGRRGIYQ 214
Query: 623 GTVENMHLHWKHRELVKIISKQRKIEAALQEARTLEVESGGILVAVERVNKGYAIILYRG 682
G + NMHLHWK + +++I K E + A L + SGGI+++++ +G II+YRG
Sbjct: 215 GVILNMHLHWKKHQTLQVIVKTFTPEEVKEIASELAILSGGIVLSIQ---EGNTIIMYRG 271
Query: 683 KNYERPA--CLRPKTLLTKREAMKRSLEAQRRQSLKLHVLELTRNIEKLKLQL------- 733
KNY +P + PK L +++A+ +S R ++L+ ++ L + +E L Q+
Sbjct: 272 KNYAQPPPEIMSPKIALPRKKALDKSKYRDRLRALRRYIPRLEQELEDLHAQMKLSGGHR 331
Query: 734 ----VKDKE-----ANSLETIDESILPLVKEEIGDMQPAECMRSDTSHEVNVQARGECGA 784
VKD NS+ ++S + K + D+ RS+ + N + + +
Sbjct: 332 GQSAVKDVTFVSDCTNSMSAKNDSSSSIHKRSVSDLLSENIERSEMLEDGNTEDDDDSAS 391
Query: 785 D-LTSTESNDTGD 796
+ +T +ES D D
Sbjct: 392 ESITCSESEDLSD 404
Score = 48.5 bits (114), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 57/116 (49%), Gaps = 1/116 (0%)
Query: 156 QKWLAKNSKMNEKEKEVPTLAELKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIH 215
++ LA K+ + PT L+ +E +G + + +G+ GI +G++ +H
Sbjct: 162 ERLLAALKKIEPNDPSEPTHDPEVLTPEEHFYFLKMGQKSKNYVPVGRRGIYQGVILNMH 221
Query: 216 ERWRHAEVVKIVCEDLCRLNMKRTHDSLERKTGGLVV-WRSGSKIILYRGADYKYP 270
W+ + ++++ + +K L +GG+V+ + G+ II+YRG +Y P
Sbjct: 222 LHWKKHQTLQVIVKTFTPEEVKEIASELAILSGGIVLSIQEGNTIIMYRGKNYAQP 277
>gi|125547308|gb|EAY93130.1| hypothetical protein OsI_14936 [Oryza sativa Indica Group]
Length = 103
Score = 106 bits (264), Expect = 8e-20, Method: Composition-based stats.
Identities = 49/79 (62%), Positives = 59/79 (74%)
Query: 343 EAELVEEADRLLDGLGPRFTDWWGYDPQPVDADLLPATVPGYRRPFRLLPYGVQPKLTND 402
E + +E D+L D LGPR+ DW DP P+DADLLPATVPGY+ PFR+LPYGV+P L+
Sbjct: 18 EIKYEDEIDKLSDELGPRYDDWPRPDPSPIDADLLPATVPGYKPPFRVLPYGVRPSLSRR 77
Query: 403 EMTTLRRLGRPLPCHFALG 421
+ T LRRL R LP HFALG
Sbjct: 78 DTTNLRRLARGLPPHFALG 96
>gi|449438181|ref|XP_004136868.1| PREDICTED: uncharacterized CRM domain-containing protein At3g25440,
chloroplastic-like [Cucumis sativus]
Length = 352
Score = 103 bits (258), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 68/196 (34%), Positives = 105/196 (53%), Gaps = 10/196 (5%)
Query: 560 IRLSRVLEKKAEAEKLLAE----LEEERPEQYEVDKEGITEEERYMLRKVGLRMKAFLLM 615
+R+ LEK E L E E +P + D E +TEEE++ L++ G + K F+L+
Sbjct: 160 VRIRYSLEKAKRKEAWLIEKLRKFEIPKPFVEKYDPEILTEEEKHYLKRTGEKKKNFVLL 219
Query: 616 GRRGVFDGTVENMHLHWKHRELVKIISKQRKIEAALQEARTLEVESGGILVAVERVNKGY 675
GRRGVF G V NMH+HWK E VK+I K K + A L S GI++ ++ N
Sbjct: 220 GRRGVFGGVVLNMHMHWKKHETVKVICKPCKPGQVHEYAEELTRLSKGIVIDIKPNN--- 276
Query: 676 AIILYRGKNYERPACLRPKTLLTKREAMKRSLEAQRRQSLKLHVLELTRNIEKLK---LQ 732
+II YRGKNY +P + P L+K +A+++ Q + + +L + +E + Q
Sbjct: 277 SIIFYRGKNYVQPEVMSPPNTLSKDKALEKYKYEQSLEHTSQFIEKLEKELEDFQKHLAQ 336
Query: 733 LVKDKEANSLETIDES 748
+ KE +LE++ S
Sbjct: 337 FKRRKEDAALESMVNS 352
Score = 49.7 bits (117), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 77/166 (46%), Gaps = 19/166 (11%)
Query: 144 VRYNQLNKEVGRQKWLAKNSKMNEKEKEVPTLAELK---LSGKELRRLRTLGIGLRKKLK 200
+RY+ L K ++ WL + K+ + E P + + L+ +E L+ G + +
Sbjct: 162 IRYS-LEKAKRKEAWLIE--KLRKFEIPKPFVEKYDPEILTEEEKHYLKRTGEKKKNFVL 218
Query: 201 IGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRTHDSLERKTGGLVV-WRSGSKI 259
+G+ G+ G+V +H W+ E VK++C+ + + L R + G+V+ + + I
Sbjct: 219 LGRRGVFGGVVLNMHMHWKKHETVKVICKPCKPGQVHEYAEELTRLSKGIVIDIKPNNSI 278
Query: 260 ILYRGADYKYPYFLADESSTDGASSDDLPNQLVDDEGLDETKTHSS 305
I YRG +Y P ++ PN L D+ L++ K S
Sbjct: 279 IFYRGKNYVQPEVMSP------------PNTLSKDKALEKYKYEQS 312
Score = 42.7 bits (99), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 45/97 (46%), Gaps = 2/97 (2%)
Query: 399 LTNDEMTTLRRLGRPLPCHFALGRNRNLQGLAAAIVKLWEKCEIAKIAVKRGAQNTNSEM 458
LT +E L+R G LGR G+ + W+K E K+ K E
Sbjct: 198 LTEEEKHYLKRTGEKKKNFVLLGRRGVFGGVVLNMHMHWKKHETVKVICKPCKPGQVHE- 256
Query: 459 MAQELKRLTGGTLLS-RDREFIVFYRGKDFLPPAASS 494
A+EL RL+ G ++ + I+FYRGK+++ P S
Sbjct: 257 YAEELTRLSKGIVIDIKPNNSIIFYRGKNYVQPEVMS 293
>gi|449479099|ref|XP_004155504.1| PREDICTED: uncharacterized CRM domain-containing protein At3g25440,
chloroplastic-like [Cucumis sativus]
Length = 290
Score = 102 bits (254), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 68/196 (34%), Positives = 105/196 (53%), Gaps = 10/196 (5%)
Query: 560 IRLSRVLEKKAEAEKLLAE----LEEERPEQYEVDKEGITEEERYMLRKVGLRMKAFLLM 615
+R+ LEK E L E E +P + D E +TEEE++ L++ G + K F+L+
Sbjct: 98 VRIRYSLEKAKRKEAWLIEKLRKFEIPKPFVEKYDPEILTEEEKHYLKRTGEKKKNFVLL 157
Query: 616 GRRGVFDGTVENMHLHWKHRELVKIISKQRKIEAALQEARTLEVESGGILVAVERVNKGY 675
GRRGVF G V NMH+HWK E VK+I K K + A L S GI++ ++ N
Sbjct: 158 GRRGVFGGVVLNMHMHWKKHETVKVICKPCKPGQVHEYAEELTRLSKGIVIDIKPNN--- 214
Query: 676 AIILYRGKNYERPACLRPKTLLTKREAMKRSLEAQRRQSLKLHVLELTRNIEKLK---LQ 732
+II YRGKNY +P + P L+K +A+++ Q + + +L + +E + Q
Sbjct: 215 SIIFYRGKNYVQPEVMSPPNTLSKDKALEKYKYEQSLEHTSQFIEKLEKELEDFQKHLAQ 274
Query: 733 LVKDKEANSLETIDES 748
+ KE +LE++ S
Sbjct: 275 FKRRKEDAALESMVNS 290
Score = 48.9 bits (115), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 59/127 (46%), Gaps = 13/127 (10%)
Query: 180 LSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRT 239
L+ +E L+ G + + +G+ G+ G+V +H W+ E VK++C+ +
Sbjct: 136 LTEEEKHYLKRTGEKKKNFVLLGRRGVFGGVVLNMHMHWKKHETVKVICKPCKPGQVHEY 195
Query: 240 HDSLERKTGGLVV-WRSGSKIILYRGADYKYPYFLADESSTDGASSDDLPNQLVDDEGLD 298
+ L R + G+V+ + + II YRG +Y P ++ PN L D+ L+
Sbjct: 196 AEELTRLSKGIVIDIKPNNSIIFYRGKNYVQPEVMSP------------PNTLSKDKALE 243
Query: 299 ETKTHSS 305
+ K S
Sbjct: 244 KYKYEQS 250
Score = 43.1 bits (100), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 45/97 (46%), Gaps = 2/97 (2%)
Query: 399 LTNDEMTTLRRLGRPLPCHFALGRNRNLQGLAAAIVKLWEKCEIAKIAVKRGAQNTNSEM 458
LT +E L+R G LGR G+ + W+K E K+ K E
Sbjct: 136 LTEEEKHYLKRTGEKKKNFVLLGRRGVFGGVVLNMHMHWKKHETVKVICKPCKPGQVHE- 194
Query: 459 MAQELKRLTGGTLLS-RDREFIVFYRGKDFLPPAASS 494
A+EL RL+ G ++ + I+FYRGK+++ P S
Sbjct: 195 YAEELTRLSKGIVIDIKPNNSIIFYRGKNYVQPEVMS 231
>gi|212723506|ref|NP_001132081.1| uncharacterized protein LOC100193495 [Zea mays]
gi|194693368|gb|ACF80768.1| unknown [Zea mays]
gi|414586598|tpg|DAA37169.1| TPA: hypothetical protein ZEAMMB73_229116 [Zea mays]
gi|414586599|tpg|DAA37170.1| TPA: hypothetical protein ZEAMMB73_229116 [Zea mays]
Length = 485
Score = 100 bits (248), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 66/206 (32%), Positives = 115/206 (55%), Gaps = 10/206 (4%)
Query: 532 GCTNDQKSTMHSEQKE--RRSAEVAIRRTNIRLSRVLEKKAEAEKLLAELEEERPEQYEV 589
TN KS ++KE R +AE I ++L+R E++ L ++E E P +
Sbjct: 125 AVTNFLKSLRWKKKKEFQRMTAEEKIL-YKLKLARKKEERLVVA--LKKIEPEDPSEPTH 181
Query: 590 DKEGITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVENMHLHWKHRELVKIISKQRKIEA 649
D E +T EE + K+G + K ++ +GRRG++ G + NMHLHWK + +++I K E
Sbjct: 182 DPEVLTPEEHFYFLKMGQKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLQVIVKTFTPEE 241
Query: 650 ALQEARTLEVESGGILVAVERVNKGYAIILYRGKNYERPA--CLRPKTLLTKREAMKRSL 707
+ A L SGGI++ ++ G II+YRGKNY +P + PK L++++A+ +S
Sbjct: 242 VKEIAIELATLSGGIVLDIQ---DGNTIIMYRGKNYAQPPPEIMSPKVSLSRKKALDKSK 298
Query: 708 EAQRRQSLKLHVLELTRNIEKLKLQL 733
++ ++L+ ++ L + +E L Q+
Sbjct: 299 YMEKLRALRRYIPRLEQELEDLHAQM 324
Score = 47.0 bits (110), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 191 LGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRTHDSLERKTGGL 250
+G + + +G+ GI +G++ +H W+ + ++++ + +K L +GG+
Sbjct: 197 MGQKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLQVIVKTFTPEEVKEIAIELATLSGGI 256
Query: 251 VV-WRSGSKIILYRGADYKYP 270
V+ + G+ II+YRG +Y P
Sbjct: 257 VLDIQDGNTIIMYRGKNYAQP 277
>gi|255567361|ref|XP_002524660.1| conserved hypothetical protein [Ricinus communis]
gi|223536021|gb|EEF37679.1| conserved hypothetical protein [Ricinus communis]
Length = 260
Score = 100 bits (248), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 59/149 (39%), Positives = 85/149 (57%), Gaps = 3/149 (2%)
Query: 557 RTNIRLSRVLEKKAEAEKLLAELEEERPEQYEVDKEGITEEERYMLRKVGLRMKAFLLMG 616
R +L + K+A + L++ E + D E +TEEE++ L++ G + K F+L+G
Sbjct: 69 RIRYKLEKAKRKEAWLIEKLSKFEVPKLRAETCDPEMLTEEEKHYLKRTGEKKKNFILVG 128
Query: 617 RRGVFDGTVENMHLHWKHRELVKIISKQRKIEAALQEARTLEVESGGILVAVERVNKGYA 676
RRGVF G V NMHLHWK E VKII K K Q A L S GI++ + N +
Sbjct: 129 RRGVFGGVVLNMHLHWKKHETVKIICKPCKPGQIHQYAEELARLSKGIVIDIRPNN---S 185
Query: 677 IILYRGKNYERPACLRPKTLLTKREAMKR 705
II YRGKNY +P + P L+K +A+++
Sbjct: 186 IIFYRGKNYVQPTVMSPPDTLSKNKALEK 214
Score = 50.8 bits (120), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 74/159 (46%), Gaps = 6/159 (3%)
Query: 144 VRYNQLNKEVGRQKWLA-KNSKMNEKEKEVPTLAELKLSGKELRRLRTLGIGLRKKLKIG 202
+RY +L K ++ WL K SK + T L+ +E L+ G + + +G
Sbjct: 70 IRY-KLEKAKRKEAWLIEKLSKFEVPKLRAETCDPEMLTEEEKHYLKRTGEKKKNFILVG 128
Query: 203 KAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRTHDSLERKTGGLVV-WRSGSKIIL 261
+ G+ G+V +H W+ E VKI+C+ + + + L R + G+V+ R + II
Sbjct: 129 RRGVFGGVVLNMHLHWKKHETVKIICKPCKPGQIHQYAEELARLSKGIVIDIRPNNSIIF 188
Query: 262 YRGADYKYPYFLADESSTDGASSDDLPNQLVDDEGLDET 300
YRG +Y P + S D S + + ++ L+ T
Sbjct: 189 YRGKNYVQPTVM---SPPDTLSKNKALEKYKYEQSLEHT 224
Score = 44.7 bits (104), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 45/97 (46%), Gaps = 2/97 (2%)
Query: 399 LTNDEMTTLRRLGRPLPCHFALGRNRNLQGLAAAIVKLWEKCEIAKIAVKRGAQNTNSEM 458
LT +E L+R G +GR G+ + W+K E KI K +
Sbjct: 106 LTEEEKHYLKRTGEKKKNFILVGRRGVFGGVVLNMHLHWKKHETVKIICK-PCKPGQIHQ 164
Query: 459 MAQELKRLTGGTLLS-RDREFIVFYRGKDFLPPAASS 494
A+EL RL+ G ++ R I+FYRGK+++ P S
Sbjct: 165 YAEELARLSKGIVIDIRPNNSIIFYRGKNYVQPTVMS 201
>gi|242073570|ref|XP_002446721.1| hypothetical protein SORBIDRAFT_06g021160 [Sorghum bicolor]
gi|241937904|gb|EES11049.1| hypothetical protein SORBIDRAFT_06g021160 [Sorghum bicolor]
Length = 484
Score = 99.4 bits (246), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 61/189 (32%), Positives = 109/189 (57%), Gaps = 8/189 (4%)
Query: 547 ERRSAEVAIRRTNIRLSRVLEKKAEAEKLLAELEEERPEQYEVDKEGITEEERYMLRKVG 606
+R +AE I ++L+R E++ A L ++E E P + D E +T EE + K+G
Sbjct: 141 QRMTAEEKIL-YKLKLARKKEERLVAA--LKKIEPEDPSEPTHDPEVLTPEEHFYFLKMG 197
Query: 607 LRMKAFLLMGRRGVFDGTVENMHLHWKHRELVKIISKQRKIEAALQEARTLEVESGGILV 666
+ K ++ +GRRG++ G + NMHLHWK + +++I K E + A L SGGI++
Sbjct: 198 QKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLQVIVKTFTPEEVKEIATELARLSGGIVL 257
Query: 667 AVERVNKGYAIILYRGKNYERPA--CLRPKTLLTKREAMKRSLEAQRRQSLKLHVLELTR 724
++ G II+YRGKNY +P + PK L++++A+ +S ++ ++L+ ++ L +
Sbjct: 258 DIQ---DGNTIIMYRGKNYAQPPPEIMSPKVSLSRKKALDKSKYMEKLRALRRYIPRLEQ 314
Query: 725 NIEKLKLQL 733
+E L Q+
Sbjct: 315 ELEDLHAQM 323
Score = 49.7 bits (117), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 191 LGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRTHDSLERKTGGL 250
+G + + +G+ GI +G++ +H W+ + ++++ + +K L R +GG+
Sbjct: 196 MGQKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLQVIVKTFTPEEVKEIATELARLSGGI 255
Query: 251 VV-WRSGSKIILYRGADYKYP 270
V+ + G+ II+YRG +Y P
Sbjct: 256 VLDIQDGNTIIMYRGKNYAQP 276
Score = 43.5 bits (101), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 47/93 (50%), Gaps = 2/93 (2%)
Query: 399 LTNDEMTTLRRLGRPLPCHFALGRNRNLQGLAAAIVKLWEKCEIAKIAVKRGAQNTNSEM 458
LT +E ++G+ + +GR QG+ + W+K + ++ VK E+
Sbjct: 185 LTPEEHFYFLKMGQKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLQVIVKTFTPEEVKEI 244
Query: 459 MAQELKRLTGGTLLS-RDREFIVFYRGKDFLPP 490
A EL RL+GG +L +D I+ YRGK++ P
Sbjct: 245 -ATELARLSGGIVLDIQDGNTIIMYRGKNYAQP 276
>gi|356501797|ref|XP_003519710.1| PREDICTED: uncharacterized CRM domain-containing protein At3g25440,
chloroplastic-like [Glycine max]
Length = 382
Score = 99.4 bits (246), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 64/200 (32%), Positives = 111/200 (55%), Gaps = 14/200 (7%)
Query: 547 ERRSAEVAIRRTNIRLSRVLEKKAEAEKLLAELEEERP-EQYEV--DKEGITEEERYMLR 603
ER +AE I L ++L+ + + E+L L++ P E E D E +T EE +
Sbjct: 74 ERMTAEEKI------LYKLLKARKKEERLCEALKKIEPAESSETTHDPEILTPEEHFFFL 127
Query: 604 KVGLRMKAFLLMGRRGVFDGTVENMHLHWKHRELVKIISKQRKIEAALQEARTLEVESGG 663
K+GL+ K ++ +GRRG++ G + NMHLHWK + +K++ K E + A L SGG
Sbjct: 128 KMGLKSKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVVVKTFSAEEVKEIATELARLSGG 187
Query: 664 ILVAVERVNKGYAIILYRGKNYERP--ACLRPKTLLTKREAMKRSLEAQRRQSLKLHVLE 721
I++ + N II+YRGKNY +P + P+ L++++A+ +S ++++ H+
Sbjct: 188 IVLDIHEDN---TIIMYRGKNYSQPPTEIMSPRVSLSRKKALDKSKYRDALRAVRRHIPR 244
Query: 722 LTRNIEKLKLQLVKDKEANS 741
L + +E L+ Q E+N+
Sbjct: 245 LEQELEILRAQFKSSAESNT 264
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 46/83 (55%), Gaps = 3/83 (3%)
Query: 191 LGIGLRKK--LKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRTHDSLERKTG 248
L +GL+ K + +G+ GI +G++ +H W+ + +K+V + +K L R +G
Sbjct: 127 LKMGLKSKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVVVKTFSAEEVKEIATELARLSG 186
Query: 249 GLVV-WRSGSKIILYRGADYKYP 270
G+V+ + II+YRG +Y P
Sbjct: 187 GIVLDIHEDNTIIMYRGKNYSQP 209
Score = 41.2 bits (95), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 2/93 (2%)
Query: 399 LTNDEMTTLRRLGRPLPCHFALGRNRNLQGLAAAIVKLWEKCEIAKIAVKRGAQNTNSEM 458
LT +E ++G + +GR QG+ + W+K + K+ VK + E+
Sbjct: 118 LTPEEHFFFLKMGLKSKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVVVKTFSAEEVKEI 177
Query: 459 MAQELKRLTGGTLLS-RDREFIVFYRGKDFLPP 490
A EL RL+GG +L + I+ YRGK++ P
Sbjct: 178 -ATELARLSGGIVLDIHEDNTIIMYRGKNYSQP 209
>gi|356511313|ref|XP_003524371.1| PREDICTED: uncharacterized CRM domain-containing protein At3g25440,
chloroplastic-like [Glycine max]
Length = 282
Score = 99.0 bits (245), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 59/150 (39%), Positives = 84/150 (56%), Gaps = 7/150 (4%)
Query: 560 IRLSRVLEKKAEAEKLLAE----LEEERPEQYEVDKEGITEEERYMLRKVGLRMKAFLLM 615
+R+ LEK E L E + +P D E +TEEER+ L++ G R K ++ +
Sbjct: 87 VRIRYKLEKAKRKETWLIEKLRKFDVPKPPPETYDPEILTEEERHYLKRTGERKKHYVPV 146
Query: 616 GRRGVFDGTVENMHLHWKHRELVKIISKQRKIEAALQEARTLEVESGGILVAVERVNKGY 675
GRRGVF G V NMHLHWK+ E VK+I K K + A L S GI++ ++ N
Sbjct: 147 GRRGVFGGVVLNMHLHWKNHETVKVICKPCKPGQVHEYAEELARLSKGIVIDIKPNN--- 203
Query: 676 AIILYRGKNYERPACLRPKTLLTKREAMKR 705
II YRGKNY +P + P L+K +A+++
Sbjct: 204 TIIFYRGKNYVKPEVMSPPNTLSKAKALEK 233
Score = 47.8 bits (112), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 71/143 (49%), Gaps = 3/143 (2%)
Query: 144 VRYNQLNKEVGRQKWLAKNSKMNEKEKEVPTLAELKLSGKELRR-LRTLGIGLRKKLKIG 202
+RY +L K ++ WL + + + K P + ++ +E R L+ G + + +G
Sbjct: 89 IRY-KLEKAKRKETWLIEKLRKFDVPKPPPETYDPEILTEEERHYLKRTGERKKHYVPVG 147
Query: 203 KAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRTHDSLERKTGGLVV-WRSGSKIIL 261
+ G+ G+V +H W++ E VK++C+ + + L R + G+V+ + + II
Sbjct: 148 RRGVFGGVVLNMHLHWKNHETVKVICKPCKPGQVHEYAEELARLSKGIVIDIKPNNTIIF 207
Query: 262 YRGADYKYPYFLADESSTDGASS 284
YRG +Y P ++ ++ A +
Sbjct: 208 YRGKNYVKPEVMSPPNTLSKAKA 230
Score = 41.2 bits (95), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 2/97 (2%)
Query: 399 LTNDEMTTLRRLGRPLPCHFALGRNRNLQGLAAAIVKLWEKCEIAKIAVKRGAQNTNSEM 458
LT +E L+R G + +GR G+ + W+ E K+ K E
Sbjct: 125 LTEEERHYLKRTGERKKHYVPVGRRGVFGGVVLNMHLHWKNHETVKVICKPCKPGQVHEY 184
Query: 459 MAQELKRLTGGTLLS-RDREFIVFYRGKDFLPPAASS 494
A+EL RL+ G ++ + I+FYRGK+++ P S
Sbjct: 185 -AEELARLSKGIVIDIKPNNTIIFYRGKNYVKPEVMS 220
>gi|168020023|ref|XP_001762543.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162686276|gb|EDQ72666.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 548
Score = 99.0 bits (245), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 90/150 (60%), Gaps = 5/150 (3%)
Query: 594 ITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVENMHLHWKHRELVKIISKQRKIEAALQE 653
+T E+ Y L+K+G + K ++ +GRRG++ GT++NMH+HWK E V+I E +
Sbjct: 225 LTPEQLYALKKLGYKNKNYVPVGRRGIYGGTIQNMHMHWKKHETVRIDCDNFPKEKIKEM 284
Query: 654 ARTLEVESGGILVAVERVNKGYAIILYRGKNYERPACLRPKTL--LTKREAMKRSLEAQR 711
TLE SGGI++ +++G II++RG+NY+RP P KR+A+ +S Q
Sbjct: 285 GETLERLSGGIVID---IHQGTTIIMWRGRNYKRPKVDIPIIFKNFNKRKALIKSKHEQS 341
Query: 712 RQSLKLHVLELTRNIEKLKLQLVKDKEANS 741
SLK +++ +++ +L+ + +++ A +
Sbjct: 342 IGSLKDQIVKWEKDLRELRADMAREEAARA 371
Score = 64.3 bits (155), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 55/92 (59%), Gaps = 1/92 (1%)
Query: 180 LSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRT 239
L+ ++L L+ LG + + +G+ GI G + +H W+ E V+I C++ + +K
Sbjct: 225 LTPEQLYALKKLGYKNKNYVPVGRRGIYGGTIQNMHMHWKKHETVRIDCDNFPKEKIKEM 284
Query: 240 HDSLERKTGGLVV-WRSGSKIILYRGADYKYP 270
++LER +GG+V+ G+ II++RG +YK P
Sbjct: 285 GETLERLSGGIVIDIHQGTTIIMWRGRNYKRP 316
>gi|238007578|gb|ACR34824.1| unknown [Zea mays]
gi|414586597|tpg|DAA37168.1| TPA: hypothetical protein ZEAMMB73_229116 [Zea mays]
Length = 342
Score = 98.6 bits (244), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 94/160 (58%), Gaps = 5/160 (3%)
Query: 576 LAELEEERPEQYEVDKEGITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVENMHLHWKHR 635
L ++E E P + D E +T EE + K+G + K ++ +GRRG++ G + NMHLHWK
Sbjct: 25 LKKIEPEDPSEPTHDPEVLTPEEHFYFLKMGQKCKNYVPVGRRGIYQGVILNMHLHWKKH 84
Query: 636 ELVKIISKQRKIEAALQEARTLEVESGGILVAVERVNKGYAIILYRGKNYERPA--CLRP 693
+ +++I K E + A L SGGI++ ++ G II+YRGKNY +P + P
Sbjct: 85 QTLQVIVKTFTPEEVKEIAIELATLSGGIVLDIQ---DGNTIIMYRGKNYAQPPPEIMSP 141
Query: 694 KTLLTKREAMKRSLEAQRRQSLKLHVLELTRNIEKLKLQL 733
K L++++A+ +S ++ ++L+ ++ L + +E L Q+
Sbjct: 142 KVSLSRKKALDKSKYMEKLRALRRYIPRLEQELEDLHAQM 181
Score = 47.0 bits (110), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 191 LGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRTHDSLERKTGGL 250
+G + + +G+ GI +G++ +H W+ + ++++ + +K L +GG+
Sbjct: 54 MGQKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLQVIVKTFTPEEVKEIAIELATLSGGI 113
Query: 251 VV-WRSGSKIILYRGADYKYP 270
V+ + G+ II+YRG +Y P
Sbjct: 114 VLDIQDGNTIIMYRGKNYAQP 134
>gi|356524301|ref|XP_003530768.1| PREDICTED: uncharacterized CRM domain-containing protein At3g25440,
chloroplastic-like [Glycine max]
Length = 282
Score = 98.2 bits (243), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 65/186 (34%), Positives = 99/186 (53%), Gaps = 11/186 (5%)
Query: 560 IRLSRVLEKKAEAEKLLAE------LEEERPEQYEVDKEGITEEERYMLRKVGLRMKAFL 613
+R++ LEK E L E + + PE + D E +TEEER+ L++ G + K ++
Sbjct: 87 VRITYKLEKAKRKETWLVEKLRKFDVPKSPPETF--DPEILTEEERHYLKRTGEKKKHYV 144
Query: 614 LMGRRGVFDGTVENMHLHWKHRELVKIISKQRKIEAALQEARTLEVESGGILVAVERVNK 673
+GRRGVF G V NMHLHWK+ E VK+I K K + A L S GI++ ++ N
Sbjct: 145 PVGRRGVFGGVVLNMHLHWKNHETVKVICKPCKPGQVHEYAEELARLSKGIVIDIKPNN- 203
Query: 674 GYAIILYRGKNYERPACLRPKTLLTKREAMKRSLEAQRRQSLKLHVLELTRNIEKLKLQL 733
II YRGKNY +P + P L+K +A+++ Q + + L + +E+ L
Sbjct: 204 --TIIFYRGKNYVQPEVMSPPNTLSKVKALEKYRYEQSLEHTSQFIERLEKELEEYHQHL 261
Query: 734 VKDKEA 739
K K+
Sbjct: 262 AKFKKG 267
Score = 47.4 bits (111), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 61/125 (48%), Gaps = 2/125 (1%)
Query: 148 QLNKEVGRQKWLAKNSKMNEKEKEVP-TLAELKLSGKELRRLRTLGIGLRKKLKIGKAGI 206
+L K ++ WL + + + K P T L+ +E L+ G + + +G+ G+
Sbjct: 92 KLEKAKRKETWLVEKLRKFDVPKSPPETFDPEILTEEERHYLKRTGEKKKHYVPVGRRGV 151
Query: 207 TEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRTHDSLERKTGGLVV-WRSGSKIILYRGA 265
G+V +H W++ E VK++C+ + + L R + G+V+ + + II YRG
Sbjct: 152 FGGVVLNMHLHWKNHETVKVICKPCKPGQVHEYAEELARLSKGIVIDIKPNNTIIFYRGK 211
Query: 266 DYKYP 270
+Y P
Sbjct: 212 NYVQP 216
Score = 42.0 bits (97), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 2/97 (2%)
Query: 399 LTNDEMTTLRRLGRPLPCHFALGRNRNLQGLAAAIVKLWEKCEIAKIAVKRGAQNTNSEM 458
LT +E L+R G + +GR G+ + W+ E K+ K E
Sbjct: 125 LTEEERHYLKRTGEKKKHYVPVGRRGVFGGVVLNMHLHWKNHETVKVICKPCKPGQVHEY 184
Query: 459 MAQELKRLTGGTLLS-RDREFIVFYRGKDFLPPAASS 494
A+EL RL+ G ++ + I+FYRGK+++ P S
Sbjct: 185 -AEELARLSKGIVIDIKPNNTIIFYRGKNYVQPEVMS 220
>gi|115467732|ref|NP_001057465.1| Os06g0304500 [Oryza sativa Japonica Group]
gi|113595505|dbj|BAF19379.1| Os06g0304500 [Oryza sativa Japonica Group]
gi|125596971|gb|EAZ36751.1| hypothetical protein OsJ_21087 [Oryza sativa Japonica Group]
Length = 348
Score = 97.4 bits (241), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 66/196 (33%), Positives = 105/196 (53%), Gaps = 18/196 (9%)
Query: 560 IRLSRVLEKKAEAEKLLAELEEERPEQYEV--------DKEGITEEERYMLRKVGLRMKA 611
+R+ LEK E+ L E + +YEV D E +TEEE++ L++ G + K
Sbjct: 144 VRIRYKLEKAKRKEEWLIE----KLRKYEVPRSPEPVHDPEILTEEEKFYLKRTGEKKKN 199
Query: 612 FLLMGRRGVFDGTVENMHLHWKHRELVKIISKQRKIEAALQEARTLEVESGGILVAVERV 671
++ +GRRGVF G V NMHLHWK E VK+I K + + A L S G ++ ++
Sbjct: 200 YVPVGRRGVFGGVVLNMHLHWKKHETVKVICKPCRPGQVYEYAEELTRLSKGTVIDIKPN 259
Query: 672 NKGYAIILYRGKNYERPACLRPKTLLTKREAMKRSLEAQRRQSLKLHVLELTRNIEKLK- 730
N II YRGKNY +P + P L+K++A+++ Q + + +L + +E +
Sbjct: 260 N---TIIFYRGKNYVQPKVMSPPDTLSKQKALEKYRYEQSLEHTSQFIEKLEKELEDYQK 316
Query: 731 -LQLVKDKEANSLETI 745
+ L K++ +LETI
Sbjct: 317 HVALFKNR-GETLETI 331
Score = 44.7 bits (104), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 47/97 (48%), Gaps = 2/97 (2%)
Query: 399 LTNDEMTTLRRLGRPLPCHFALGRNRNLQGLAAAIVKLWEKCEIAKIAVKRGAQNTNSEM 458
LT +E L+R G + +GR G+ + W+K E K+ K E
Sbjct: 182 LTEEEKFYLKRTGEKKKNYVPVGRRGVFGGVVLNMHLHWKKHETVKVICKPCRPGQVYE- 240
Query: 459 MAQELKRLTGGTLLS-RDREFIVFYRGKDFLPPAASS 494
A+EL RL+ GT++ + I+FYRGK+++ P S
Sbjct: 241 YAEELTRLSKGTVIDIKPNNTIIFYRGKNYVQPKVMS 277
Score = 44.3 bits (103), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 64/133 (48%), Gaps = 3/133 (2%)
Query: 144 VRYNQLNKEVGRQKWLAKNSKMNEKEKEV-PTLAELKLSGKELRRLRTLGIGLRKKLKIG 202
+RY +L K +++WL + + E + P L+ +E L+ G + + +G
Sbjct: 146 IRY-KLEKAKRKEEWLIEKLRKYEVPRSPEPVHDPEILTEEEKFYLKRTGEKKKNYVPVG 204
Query: 203 KAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRTHDSLERKTGGLVV-WRSGSKIIL 261
+ G+ G+V +H W+ E VK++C+ + + L R + G V+ + + II
Sbjct: 205 RRGVFGGVVLNMHLHWKKHETVKVICKPCRPGQVYEYAEELTRLSKGTVIDIKPNNTIIF 264
Query: 262 YRGADYKYPYFLA 274
YRG +Y P ++
Sbjct: 265 YRGKNYVQPKVMS 277
>gi|326525483|dbj|BAJ88788.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 340
Score = 97.1 bits (240), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 101/192 (52%), Gaps = 9/192 (4%)
Query: 560 IRLSRVLEKKAEAEKLLAE----LEEERPEQYEVDKEGITEEERYMLRKVGLRMKAFLLM 615
+R+ LEK E+ L E E R + D E +TEEE++ L++ G + K ++ +
Sbjct: 135 VRIRYKLEKAKRKEEWLIEKLRKYEAPRAPEPVHDPEILTEEEKFYLKRTGEKKKNYVPV 194
Query: 616 GRRGVFDGTVENMHLHWKHRELVKIISKQRKIEAALQEARTLEVESGGILVAVERVNKGY 675
GRRGVF G V NMHLHWK E +K++ K + + A L S G ++ ++ N
Sbjct: 195 GRRGVFGGVVLNMHLHWKKHETMKVVCKPCRPGQVYEYAEELARLSKGTVIDIKPNN--- 251
Query: 676 AIILYRGKNYERPACLRPKTLLTKREAMKRSLEAQRRQSLKLHVLELTRNIEKLK--LQL 733
II YRGKNY +P + P L+K++A+++ Q + + +L + +E + + L
Sbjct: 252 TIIFYRGKNYVQPKVMSPPDTLSKQKALEKYRYEQSLEHTSKFIEQLEQELEDYQKHVAL 311
Query: 734 VKDKEANSLETI 745
K +E + E I
Sbjct: 312 FKKREGANSEQI 323
Score = 45.8 bits (107), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 64/133 (48%), Gaps = 3/133 (2%)
Query: 144 VRYNQLNKEVGRQKWLAKNSKMNEKEKEV-PTLAELKLSGKELRRLRTLGIGLRKKLKIG 202
+RY +L K +++WL + + E + P L+ +E L+ G + + +G
Sbjct: 137 IRY-KLEKAKRKEEWLIEKLRKYEAPRAPEPVHDPEILTEEEKFYLKRTGEKKKNYVPVG 195
Query: 203 KAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRTHDSLERKTGGLVV-WRSGSKIIL 261
+ G+ G+V +H W+ E +K+VC+ + + L R + G V+ + + II
Sbjct: 196 RRGVFGGVVLNMHLHWKKHETMKVVCKPCRPGQVYEYAEELARLSKGTVIDIKPNNTIIF 255
Query: 262 YRGADYKYPYFLA 274
YRG +Y P ++
Sbjct: 256 YRGKNYVQPKVMS 268
Score = 44.7 bits (104), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 47/97 (48%), Gaps = 2/97 (2%)
Query: 399 LTNDEMTTLRRLGRPLPCHFALGRNRNLQGLAAAIVKLWEKCEIAKIAVKRGAQNTNSEM 458
LT +E L+R G + +GR G+ + W+K E K+ K E
Sbjct: 173 LTEEEKFYLKRTGEKKKNYVPVGRRGVFGGVVLNMHLHWKKHETMKVVCKPCRPGQVYE- 231
Query: 459 MAQELKRLTGGTLLS-RDREFIVFYRGKDFLPPAASS 494
A+EL RL+ GT++ + I+FYRGK+++ P S
Sbjct: 232 YAEELARLSKGTVIDIKPNNTIIFYRGKNYVQPKVMS 268
>gi|449437795|ref|XP_004136676.1| PREDICTED: uncharacterized protein LOC101208777 [Cucumis sativus]
gi|449494725|ref|XP_004159629.1| PREDICTED: uncharacterized LOC101208777 [Cucumis sativus]
Length = 431
Score = 96.3 bits (238), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 79/287 (27%), Positives = 137/287 (47%), Gaps = 34/287 (11%)
Query: 566 LEKKAEAEKLLAELEEERPEQYEVDK--------EGITEEERYMLRKVGLRMKAFLLMGR 617
++ K E ++ L ER +YEV K +T EER+ ++K+G + ++ +GR
Sbjct: 132 IKNKLENARIKEALLIERLRRYEVPKVQGPMVKPHDLTGEERFYIKKMGQKRSNYVPIGR 191
Query: 618 RGVFDGTVENMHLHWKHRELVKIISKQRKIEAALQEARTLEVESGGILVAVERVNKGYAI 677
RGVF G + NMH+HWK E VK+ K K + A+ + SGGI + + + I
Sbjct: 192 RGVFGGVILNMHMHWKKHETVKVYCKPCKPGQVHEYAQEIARLSGGIPIQIIGDD---TI 248
Query: 678 ILYRGKNYERPACLRPKTLLTKREAMKRSLEAQRRQSLKLHVLELTRNIEKLKLQLV--- 734
I YRGK+Y +P + P L+K+ A+++S Q +S++ + + +E +
Sbjct: 249 IFYRGKDYVQPEVMSPIDTLSKKRALEKSKYEQSLESVRRFIAIAEKELELYYRHIALYG 308
Query: 735 --KDKEANSLETIDESILPLVKEEIGDMQ----PAECMRSDTSHEVNVQARGECGADLTS 788
D+ S+ + L K +I +M+ A C+ SD ++ N D +
Sbjct: 309 DPNDRNPLSILNVPSDNLNSDKYQITNMEDSHSAALCLASDVMNQRN--------PDFSD 360
Query: 789 TESNDTGDATIDGPPAI-QQDKQTESLTHNG-----ISINEIESKSS 829
ES D GD D + + D +++ L +G +S+++ E SS
Sbjct: 361 DESLDIGDGFADACFSTSESDFESDKLDESGEGRMEVSVSQTEEISS 407
Score = 51.6 bits (122), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 1/99 (1%)
Query: 173 PTLAELKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLC 232
P + L+G+E ++ +G + IG+ G+ G++ +H W+ E VK+ C+
Sbjct: 161 PMVKPHDLTGEERFYIKKMGQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVYCKPCK 220
Query: 233 RLNMKRTHDSLERKTGGLVVWRSGSK-IILYRGADYKYP 270
+ + R +GG+ + G II YRG DY P
Sbjct: 221 PGQVHEYAQEIARLSGGIPIQIIGDDTIIFYRGKDYVQP 259
Score = 48.1 bits (113), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 51/102 (50%), Gaps = 6/102 (5%)
Query: 399 LTNDEMTTLRRLGRPLPCHFALGRNRNLQGLAAAIVKLWEKCEIAKIAVKRGAQNTNSEM 458
LT +E ++++G+ + +GR G+ + W+K E K+ K E
Sbjct: 168 LTGEERFYIKKMGQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVYCKPCKPGQVHEY 227
Query: 459 MAQELKRLTGGT---LLSRDREFIVFYRGKDFLPPAASSAIE 497
AQE+ RL+GG ++ D I+FYRGKD++ P S I+
Sbjct: 228 -AQEIARLSGGIPIQIIGDDT--IIFYRGKDYVQPEVMSPID 266
>gi|242076260|ref|XP_002448066.1| hypothetical protein SORBIDRAFT_06g020410 [Sorghum bicolor]
gi|241939249|gb|EES12394.1| hypothetical protein SORBIDRAFT_06g020410 [Sorghum bicolor]
Length = 338
Score = 95.9 bits (237), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 63/196 (32%), Positives = 105/196 (53%), Gaps = 17/196 (8%)
Query: 560 IRLSRVLEKKAEAEKLLAELEEERPEQYEV--------DKEGITEEERYMLRKVGLRMKA 611
+R+ LEK E+ L E + +Y+V D E +TEEE++ L++ G + K
Sbjct: 133 VRIRYKLEKAKRKEEWLIE----KLRKYDVPRTPEPVHDPEILTEEEKFYLKRTGEKKKN 188
Query: 612 FLLMGRRGVFDGTVENMHLHWKHRELVKIISKQRKIEAALQEARTLEVESGGILVAVERV 671
++ +GRRGVF G V NMHLHWK+ E VK++ K + + A L S G ++ ++
Sbjct: 189 YVPVGRRGVFGGVVLNMHLHWKNHETVKVVCKPCRPGQVYEYAEELTRLSKGTIIDIKPN 248
Query: 672 NKGYAIILYRGKNYERPACLRPKTLLTKREAMKRSLEAQRRQSLKLHVLELTRNIEKLK- 730
N I+ YRGKNY +P + P L+K++A+++ Q + + +L + +E K
Sbjct: 249 N---TIMFYRGKNYVQPQVMSPPDTLSKQKALEKYRYLQSLEHTSQFIEKLEKELEDYKK 305
Query: 731 -LQLVKDKEANSLETI 745
+ L K++E + E I
Sbjct: 306 HVALFKNREGVASEKI 321
Score = 42.7 bits (99), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 46/97 (47%), Gaps = 2/97 (2%)
Query: 399 LTNDEMTTLRRLGRPLPCHFALGRNRNLQGLAAAIVKLWEKCEIAKIAVKRGAQNTNSEM 458
LT +E L+R G + +GR G+ + W+ E K+ K E
Sbjct: 171 LTEEEKFYLKRTGEKKKNYVPVGRRGVFGGVVLNMHLHWKNHETVKVVCKPCRPGQVYE- 229
Query: 459 MAQELKRLTGGTLLS-RDREFIVFYRGKDFLPPAASS 494
A+EL RL+ GT++ + I+FYRGK+++ P S
Sbjct: 230 YAEELTRLSKGTIIDIKPNNTIMFYRGKNYVQPQVMS 266
Score = 42.4 bits (98), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 49/96 (51%), Gaps = 1/96 (1%)
Query: 180 LSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRT 239
L+ +E L+ G + + +G+ G+ G+V +H W++ E VK+VC+ +
Sbjct: 171 LTEEEKFYLKRTGEKKKNYVPVGRRGVFGGVVLNMHLHWKNHETVKVVCKPCRPGQVYEY 230
Query: 240 HDSLERKTGGLVV-WRSGSKIILYRGADYKYPYFLA 274
+ L R + G ++ + + I+ YRG +Y P ++
Sbjct: 231 AEELTRLSKGTIIDIKPNNTIMFYRGKNYVQPQVMS 266
>gi|357478871|ref|XP_003609721.1| CRM domain-containing protein, putative [Medicago truncatula]
gi|355510776|gb|AES91918.1| CRM domain-containing protein, putative [Medicago truncatula]
Length = 399
Score = 95.9 bits (237), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 55/150 (36%), Positives = 84/150 (56%), Gaps = 3/150 (2%)
Query: 589 VDKEGITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVENMHLHWKHRELVKIISKQRKIE 648
D E +TEEER+ L++ G + K ++ +GRRGVF G V NMHLHWK+ E VK+I K K
Sbjct: 247 FDPEILTEEERHYLKRTGEKKKHYVPVGRRGVFGGVVLNMHLHWKNHETVKVICKPCKPG 306
Query: 649 AALQEARTLEVESGGILVAVERVNKGYAIILYRGKNYERPACLRPKTLLTKREAMKRSLE 708
A + A L S GI++ ++ II YRGKNY +P + P L+K +A+++
Sbjct: 307 QAHEYAEELARLSKGIVIDIK---PNSIIIFYRGKNYVQPKVMSPPDTLSKAKALEKYRY 363
Query: 709 AQRRQSLKLHVLELTRNIEKLKLQLVKDKE 738
Q + + L + +E+ + K K+
Sbjct: 364 EQSLEHTSQFIERLEKELEEYHEHVAKFKK 393
Score = 49.7 bits (117), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 67/143 (46%), Gaps = 3/143 (2%)
Query: 144 VRYNQLNKEVGRQKWLA-KNSKMNEKEKEVPTLAELKLSGKELRRLRTLGIGLRKKLKIG 202
+RY +L K ++ WL K K + + T L+ +E L+ G + + +G
Sbjct: 216 IRY-KLEKAKRKETWLIEKLRKFDVPKLPTETFDPEILTEEERHYLKRTGEKKKHYVPVG 274
Query: 203 KAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRTHDSLERKTGGLVV-WRSGSKIIL 261
+ G+ G+V +H W++ E VK++C+ + L R + G+V+ + S II
Sbjct: 275 RRGVFGGVVLNMHLHWKNHETVKVICKPCKPGQAHEYAEELARLSKGIVIDIKPNSIIIF 334
Query: 262 YRGADYKYPYFLADESSTDGASS 284
YRG +Y P ++ + A +
Sbjct: 335 YRGKNYVQPKVMSPPDTLSKAKA 357
Score = 42.7 bits (99), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 2/97 (2%)
Query: 399 LTNDEMTTLRRLGRPLPCHFALGRNRNLQGLAAAIVKLWEKCEIAKIAVKRGAQNTNSEM 458
LT +E L+R G + +GR G+ + W+ E K+ K E
Sbjct: 252 LTEEERHYLKRTGEKKKHYVPVGRRGVFGGVVLNMHLHWKNHETVKVICKPCKPGQAHEY 311
Query: 459 MAQELKRLTGGTLLS-RDREFIVFYRGKDFLPPAASS 494
A+EL RL+ G ++ + I+FYRGK+++ P S
Sbjct: 312 -AEELARLSKGIVIDIKPNSIIIFYRGKNYVQPKVMS 347
>gi|5123948|emb|CAB45506.1| putative protein [Arabidopsis thaliana]
gi|7268009|emb|CAB78349.1| putative protein [Arabidopsis thaliana]
Length = 332
Score = 95.9 bits (237), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 61/155 (39%), Positives = 88/155 (56%), Gaps = 16/155 (10%)
Query: 560 IRLSRVLEKKAEAEKLLAELEEERPEQYEV--------DKEGITEEERYMLRKVGLRMKA 611
+R+ LEK E+ L E + +Y+V D E +TEEE++ L++ G + K
Sbjct: 133 VRIRYKLEKAKRKEEWLIE----KLRKYDVPKSPAEPYDPESLTEEEQHYLKRTGEKRKN 188
Query: 612 FLLMGRRGVFDGTVENMHLHWKHRELVKIISKQRKIEAALQE-ARTLEVESGGILVAVER 670
F+L+GRRGVF G V N+HLHWK E VK+I K + E A L S GI++ V+
Sbjct: 189 FVLVGRRGVFGGVVLNLHLHWKKHETVKVICKPCNKPGQVHEYAEELARLSKGIVIDVKP 248
Query: 671 VNKGYAIILYRGKNYERPACLRPKTLLTKREAMKR 705
N I+LYRGKNY RP + P L+K +A+++
Sbjct: 249 NN---TIVLYRGKNYVRPEVMSPVDTLSKDKALEK 280
Score = 45.4 bits (106), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 60/123 (48%), Gaps = 5/123 (4%)
Query: 180 LSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRT 239
L+ +E L+ G + + +G+ G+ G+V +H W+ E VK++C+ +
Sbjct: 171 LTEEEQHYLKRTGEKRKNFVLVGRRGVFGGVVLNLHLHWKKHETVKVICKPCNKPGQVHE 230
Query: 240 H-DSLERKTGGLVV-WRSGSKIILYRGADYKYPYFLADESSTDGASSDDLPNQLVDDEGL 297
+ + L R + G+V+ + + I+LYRG +Y P + S D S D + ++ L
Sbjct: 231 YAEELARLSKGIVIDVKPNNTIVLYRGKNYVRPEVM---SPVDTLSKDKALEKYRYEQSL 287
Query: 298 DET 300
+ T
Sbjct: 288 EHT 290
Score = 42.7 bits (99), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 46/100 (46%), Gaps = 1/100 (1%)
Query: 399 LTNDEMTTLRRLGRPLPCHFALGRNRNLQGLAAAIVKLWEKCEIAKIAVKRGAQNTNSEM 458
LT +E L+R G +GR G+ + W+K E K+ K +
Sbjct: 171 LTEEEQHYLKRTGEKRKNFVLVGRRGVFGGVVLNLHLHWKKHETVKVICKPCNKPGQVHE 230
Query: 459 MAQELKRLTGGTLLS-RDREFIVFYRGKDFLPPAASSAIE 497
A+EL RL+ G ++ + IV YRGK+++ P S ++
Sbjct: 231 YAEELARLSKGIVIDVKPNNTIVLYRGKNYVRPEVMSPVD 270
>gi|297790600|ref|XP_002863185.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297309019|gb|EFH39444.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 343
Score = 95.5 bits (236), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 61/155 (39%), Positives = 88/155 (56%), Gaps = 16/155 (10%)
Query: 560 IRLSRVLEKKAEAEKLLAELEEERPEQYEV--------DKEGITEEERYMLRKVGLRMKA 611
+R+ LEK E+ L E + +Y+V D E +TEEE++ L++ G + K
Sbjct: 144 VRIRYKLEKAKRKEEWLIE----KLRKYDVPKSSAEPYDPESLTEEEQHYLKRTGEKRKN 199
Query: 612 FLLMGRRGVFDGTVENMHLHWKHRELVKIISKQRKIEAALQE-ARTLEVESGGILVAVER 670
F+L+GRRGVF G V N+HLHWK E VK+I K + E A L S GI++ V+
Sbjct: 200 FVLVGRRGVFGGVVLNLHLHWKKHETVKVICKPCNKPGQVHEYAEELARLSKGIVIDVKP 259
Query: 671 VNKGYAIILYRGKNYERPACLRPKTLLTKREAMKR 705
N I+LYRGKNY RP + P L+K +A+++
Sbjct: 260 NN---TIVLYRGKNYVRPEVMSPVDTLSKDKALEK 291
Score = 45.4 bits (106), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 60/123 (48%), Gaps = 5/123 (4%)
Query: 180 LSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRT 239
L+ +E L+ G + + +G+ G+ G+V +H W+ E VK++C+ +
Sbjct: 182 LTEEEQHYLKRTGEKRKNFVLVGRRGVFGGVVLNLHLHWKKHETVKVICKPCNKPGQVHE 241
Query: 240 H-DSLERKTGGLVV-WRSGSKIILYRGADYKYPYFLADESSTDGASSDDLPNQLVDDEGL 297
+ + L R + G+V+ + + I+LYRG +Y P + S D S D + ++ L
Sbjct: 242 YAEELARLSKGIVIDVKPNNTIVLYRGKNYVRPEVM---SPVDTLSKDKALEKYRYEQSL 298
Query: 298 DET 300
+ T
Sbjct: 299 EHT 301
Score = 43.1 bits (100), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 46/100 (46%), Gaps = 1/100 (1%)
Query: 399 LTNDEMTTLRRLGRPLPCHFALGRNRNLQGLAAAIVKLWEKCEIAKIAVKRGAQNTNSEM 458
LT +E L+R G +GR G+ + W+K E K+ K +
Sbjct: 182 LTEEEQHYLKRTGEKRKNFVLVGRRGVFGGVVLNLHLHWKKHETVKVICKPCNKPGQVHE 241
Query: 459 MAQELKRLTGGTLLS-RDREFIVFYRGKDFLPPAASSAIE 497
A+EL RL+ G ++ + IV YRGK+++ P S ++
Sbjct: 242 YAEELARLSKGIVIDVKPNNTIVLYRGKNYVRPEVMSPVD 281
>gi|42566743|ref|NP_193043.2| RNA-binding CRS1 / YhbY (CRM) domain protein [Arabidopsis thaliana]
gi|51968644|dbj|BAD43014.1| putative protein [Arabidopsis thaliana]
gi|51971084|dbj|BAD44234.1| putative protein [Arabidopsis thaliana]
gi|51971893|dbj|BAD44611.1| putative protein [Arabidopsis thaliana]
gi|63003852|gb|AAY25455.1| At4g13070 [Arabidopsis thaliana]
gi|115646846|gb|ABJ17138.1| At4g13070 [Arabidopsis thaliana]
gi|332657826|gb|AEE83226.1| RNA-binding CRS1 / YhbY (CRM) domain protein [Arabidopsis thaliana]
Length = 343
Score = 95.5 bits (236), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 61/155 (39%), Positives = 88/155 (56%), Gaps = 16/155 (10%)
Query: 560 IRLSRVLEKKAEAEKLLAELEEERPEQYEV--------DKEGITEEERYMLRKVGLRMKA 611
+R+ LEK E+ L E + +Y+V D E +TEEE++ L++ G + K
Sbjct: 144 VRIRYKLEKAKRKEEWLIE----KLRKYDVPKSPAEPYDPESLTEEEQHYLKRTGEKRKN 199
Query: 612 FLLMGRRGVFDGTVENMHLHWKHRELVKIISKQRKIEAALQE-ARTLEVESGGILVAVER 670
F+L+GRRGVF G V N+HLHWK E VK+I K + E A L S GI++ V+
Sbjct: 200 FVLVGRRGVFGGVVLNLHLHWKKHETVKVICKPCNKPGQVHEYAEELARLSKGIVIDVKP 259
Query: 671 VNKGYAIILYRGKNYERPACLRPKTLLTKREAMKR 705
N I+LYRGKNY RP + P L+K +A+++
Sbjct: 260 NN---TIVLYRGKNYVRPEVMSPVDTLSKDKALEK 291
Score = 45.4 bits (106), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 60/123 (48%), Gaps = 5/123 (4%)
Query: 180 LSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRT 239
L+ +E L+ G + + +G+ G+ G+V +H W+ E VK++C+ +
Sbjct: 182 LTEEEQHYLKRTGEKRKNFVLVGRRGVFGGVVLNLHLHWKKHETVKVICKPCNKPGQVHE 241
Query: 240 H-DSLERKTGGLVV-WRSGSKIILYRGADYKYPYFLADESSTDGASSDDLPNQLVDDEGL 297
+ + L R + G+V+ + + I+LYRG +Y P + S D S D + ++ L
Sbjct: 242 YAEELARLSKGIVIDVKPNNTIVLYRGKNYVRPEVM---SPVDTLSKDKALEKYRYEQSL 298
Query: 298 DET 300
+ T
Sbjct: 299 EHT 301
Score = 42.7 bits (99), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 46/100 (46%), Gaps = 1/100 (1%)
Query: 399 LTNDEMTTLRRLGRPLPCHFALGRNRNLQGLAAAIVKLWEKCEIAKIAVKRGAQNTNSEM 458
LT +E L+R G +GR G+ + W+K E K+ K +
Sbjct: 182 LTEEEQHYLKRTGEKRKNFVLVGRRGVFGGVVLNLHLHWKKHETVKVICKPCNKPGQVHE 241
Query: 459 MAQELKRLTGGTLLS-RDREFIVFYRGKDFLPPAASSAIE 497
A+EL RL+ G ++ + IV YRGK+++ P S ++
Sbjct: 242 YAEELARLSKGIVIDVKPNNTIVLYRGKNYVRPEVMSPVD 281
>gi|356498434|ref|XP_003518057.1| PREDICTED: uncharacterized CRM domain-containing protein At3g25440,
chloroplastic-like, partial [Glycine max]
Length = 383
Score = 95.1 bits (235), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 105/185 (56%), Gaps = 8/185 (4%)
Query: 562 LSRVLEKKAEAEKLLAELEEERP-EQYEV--DKEGITEEERYMLRKVGLRMKAFLLMGRR 618
L ++L+ + + E+L L++ P E E D E +T EE + K+GL+ K ++ +GRR
Sbjct: 63 LYKLLKARKKEERLCEALKKIEPAESSETTHDPEILTPEEHFFFLKMGLKSKNYVPVGRR 122
Query: 619 GVFDGTVENMHLHWKHRELVKIISKQRKIEAALQEARTLEVESGGILVAVERVNKGYAII 678
G++ G + NMHLHWK + +K++ K E + A L SGGI++ + N II
Sbjct: 123 GIYQGVILNMHLHWKKHQTLKVVVKTFSAEEVKEIAAELARLSGGIVLDIHEDN---TII 179
Query: 679 LYRGKNYERP--ACLRPKTLLTKREAMKRSLEAQRRQSLKLHVLELTRNIEKLKLQLVKD 736
+YRGKNY +P + P+ L++++A+ +S ++++ ++ L + +E L+ Q
Sbjct: 180 MYRGKNYSQPPTEIMSPRVSLSRKKALDKSKYRDALRAVRRYIPRLEQELEILRAQFKSS 239
Query: 737 KEANS 741
E+N+
Sbjct: 240 AESNT 244
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 46/83 (55%), Gaps = 3/83 (3%)
Query: 191 LGIGLRKK--LKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRTHDSLERKTG 248
L +GL+ K + +G+ GI +G++ +H W+ + +K+V + +K L R +G
Sbjct: 107 LKMGLKSKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVVVKTFSAEEVKEIAAELARLSG 166
Query: 249 GLVV-WRSGSKIILYRGADYKYP 270
G+V+ + II+YRG +Y P
Sbjct: 167 GIVLDIHEDNTIIMYRGKNYSQP 189
Score = 42.0 bits (97), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 2/93 (2%)
Query: 399 LTNDEMTTLRRLGRPLPCHFALGRNRNLQGLAAAIVKLWEKCEIAKIAVKRGAQNTNSEM 458
LT +E ++G + +GR QG+ + W+K + K+ VK + E+
Sbjct: 98 LTPEEHFFFLKMGLKSKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVVVKTFSAEEVKEI 157
Query: 459 MAQELKRLTGGTLLS-RDREFIVFYRGKDFLPP 490
A EL RL+GG +L + I+ YRGK++ P
Sbjct: 158 AA-ELARLSGGIVLDIHEDNTIIMYRGKNYSQP 189
>gi|225444203|ref|XP_002270373.1| PREDICTED: uncharacterized CRM domain-containing protein At3g25440,
chloroplastic [Vitis vinifera]
gi|296089227|emb|CBI38999.3| unnamed protein product [Vitis vinifera]
Length = 269
Score = 94.7 bits (234), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/116 (42%), Positives = 72/116 (62%), Gaps = 3/116 (2%)
Query: 590 DKEGITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVENMHLHWKHRELVKIISKQRKIEA 649
D E +TEEE++ L++ G + K ++ +GRRGVF G V NMHLHWK E VK+I K K+
Sbjct: 118 DPEILTEEEKFYLKRTGEKKKNYVPVGRRGVFGGVVLNMHLHWKKHETVKVICKPCKVGQ 177
Query: 650 ALQEARTLEVESGGILVAVERVNKGYAIILYRGKNYERPACLRPKTLLTKREAMKR 705
+ A L S GI++ ++ N II YRGKNY +P + P L+K +A+++
Sbjct: 178 VYEYAEELARLSKGIMIDIKPNN---TIIFYRGKNYVQPQVMSPPDTLSKSKALEK 230
Score = 44.3 bits (103), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 52/97 (53%), Gaps = 3/97 (3%)
Query: 180 LSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRT 239
L+ +E L+ G + + +G+ G+ G+V +H W+ E VK++C+ C++
Sbjct: 122 LTEEEKFYLKRTGEKKKNYVPVGRRGVFGGVVLNMHLHWKKHETVKVICKP-CKVGQVYE 180
Query: 240 H-DSLERKTGGLVV-WRSGSKIILYRGADYKYPYFLA 274
+ + L R + G+++ + + II YRG +Y P ++
Sbjct: 181 YAEELARLSKGIMIDIKPNNTIIFYRGKNYVQPQVMS 217
Score = 43.5 bits (101), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 46/97 (47%), Gaps = 2/97 (2%)
Query: 399 LTNDEMTTLRRLGRPLPCHFALGRNRNLQGLAAAIVKLWEKCEIAKIAVKRGAQNTNSEM 458
LT +E L+R G + +GR G+ + W+K E K+ K E
Sbjct: 122 LTEEEKFYLKRTGEKKKNYVPVGRRGVFGGVVLNMHLHWKKHETVKVICKPCKVGQVYE- 180
Query: 459 MAQELKRLTGGTLLS-RDREFIVFYRGKDFLPPAASS 494
A+EL RL+ G ++ + I+FYRGK+++ P S
Sbjct: 181 YAEELARLSKGIMIDIKPNNTIIFYRGKNYVQPQVMS 217
>gi|255572670|ref|XP_002527268.1| conserved hypothetical protein [Ricinus communis]
gi|223533361|gb|EEF35112.1| conserved hypothetical protein [Ricinus communis]
Length = 458
Score = 94.4 bits (233), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 90/154 (58%), Gaps = 5/154 (3%)
Query: 590 DKEGITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVENMHLHWKHRELVKIISKQRKIEA 649
D E +T EE + K+GL+ K ++ +GRRG++ G + NMHLHWK + V+++ K E
Sbjct: 167 DPEILTPEEHFFFLKMGLKCKNYVPVGRRGIYQGVILNMHLHWKKHQTVQVVVKTFSPEE 226
Query: 650 ALQEARTLEVESGGILVAVERVNKGYAIILYRGKNYERPA--CLRPKTLLTKREAMKRSL 707
+ A L +GGI++ + N II+YRGKNY +P + P+ L++++A+ +S
Sbjct: 227 VKEIAAELARLTGGIVLDIHEEN---TIIMYRGKNYSQPPTEIMSPRITLSRKKALDKSK 283
Query: 708 EAQRRQSLKLHVLELTRNIEKLKLQLVKDKEANS 741
++++ ++ L +++E LK+Q + E S
Sbjct: 284 YRDGLRAVRNYIPRLEQDLELLKVQSMGKAECGS 317
Score = 50.8 bits (120), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 191 LGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRTHDSLERKTGGL 250
+G+ + + +G+ GI +G++ +H W+ + V++V + +K L R TGG+
Sbjct: 182 MGLKCKNYVPVGRRGIYQGVILNMHLHWKKHQTVQVVVKTFSPEEVKEIAAELARLTGGI 241
Query: 251 VV-WRSGSKIILYRGADYKYP 270
V+ + II+YRG +Y P
Sbjct: 242 VLDIHEENTIIMYRGKNYSQP 262
Score = 43.1 bits (100), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 46/93 (49%), Gaps = 2/93 (2%)
Query: 399 LTNDEMTTLRRLGRPLPCHFALGRNRNLQGLAAAIVKLWEKCEIAKIAVKRGAQNTNSEM 458
LT +E ++G + +GR QG+ + W+K + ++ VK + E+
Sbjct: 171 LTPEEHFFFLKMGLKCKNYVPVGRRGIYQGVILNMHLHWKKHQTVQVVVKTFSPEEVKEI 230
Query: 459 MAQELKRLTGGTLLSRDRE-FIVFYRGKDFLPP 490
A EL RLTGG +L E I+ YRGK++ P
Sbjct: 231 AA-ELARLTGGIVLDIHEENTIIMYRGKNYSQP 262
>gi|115459160|ref|NP_001053180.1| Os04g0492900 [Oryza sativa Japonica Group]
gi|21740788|emb|CAD41533.1| OSJNBb0091E11.2 [Oryza sativa Japonica Group]
gi|38346227|emb|CAE02049.2| OJ990528_30.7 [Oryza sativa Japonica Group]
gi|90265163|emb|CAH67731.1| H0522A01.2 [Oryza sativa Indica Group]
gi|113564751|dbj|BAF15094.1| Os04g0492900 [Oryza sativa Japonica Group]
gi|116310744|emb|CAH67539.1| H0425E08.7 [Oryza sativa Indica Group]
gi|125548841|gb|EAY94663.1| hypothetical protein OsI_16441 [Oryza sativa Indica Group]
Length = 479
Score = 94.4 bits (233), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 60/191 (31%), Positives = 111/191 (58%), Gaps = 10/191 (5%)
Query: 560 IRLSRVLEKKAEAEKLLAELEEERPEQYEVDKEGITEEERYMLRKVGLRMKAFLLMGRRG 619
++L+R E++ A L ++E + P + D E +T EE + K+G + K ++ +GRRG
Sbjct: 147 LKLARNKEERLVA--ALTKIEPDDPSEPTHDPEVLTPEEHFYFLKMGQKSKNYVPVGRRG 204
Query: 620 VFDGTVENMHLHWKHRELVKIISKQRKIEAALQEARTLEVESGGILVAVERVNKGYAIIL 679
++ G + NMHLHWK + +++I K + + A L SGGI++ ++ +G II+
Sbjct: 205 IYQGVILNMHLHWKKHQTLQVIVKTFTPDEVKEIASELARLSGGIVLDIQ---EGNTIIM 261
Query: 680 YRGKNYERPA--CLRPKTLLTKREAMKRSLEAQRRQSLKLHVLELTRNIEKL--KLQLVK 735
YRGKNY +P + PK L +++A+ +S +R ++L+ ++ L + + L +++L +
Sbjct: 262 YRGKNYAQPPPEIMSPKVTLPRKKALDKSKYRERLRALRRYIPRLEQELVDLHAQMKLAR 321
Query: 736 D-KEANSLETI 745
D K N+ E I
Sbjct: 322 DYKGQNAAEDI 332
Score = 50.1 bits (118), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 62/122 (50%), Gaps = 4/122 (3%)
Query: 150 NKEVGRQKWLAKNSKMNEKEKEVPTLAELKLSGKELRRLRTLGIGLRKKLKIGKAGITEG 209
NKE ++ +A +K+ + PT L+ +E +G + + +G+ GI +G
Sbjct: 152 NKE---ERLVAALTKIEPDDPSEPTHDPEVLTPEEHFYFLKMGQKSKNYVPVGRRGIYQG 208
Query: 210 IVNGIHERWRHAEVVKIVCEDLCRLNMKRTHDSLERKTGGLVV-WRSGSKIILYRGADYK 268
++ +H W+ + ++++ + +K L R +GG+V+ + G+ II+YRG +Y
Sbjct: 209 VILNMHLHWKKHQTLQVIVKTFTPDEVKEIASELARLSGGIVLDIQEGNTIIMYRGKNYA 268
Query: 269 YP 270
P
Sbjct: 269 QP 270
Score = 42.7 bits (99), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 56/224 (25%), Positives = 88/224 (39%), Gaps = 35/224 (15%)
Query: 399 LTNDEMTTLRRLGRPLPCHFALGRNRNLQGLAAAIVKLWEKCEIAKIAVKRGAQNTNSEM 458
LT +E ++G+ + +GR QG+ + W+K + ++ VK + E+
Sbjct: 179 LTPEEHFYFLKMGQKSKNYVPVGRRGIYQGVILNMHLHWKKHQTLQVIVKTFTPDEVKEI 238
Query: 459 MAQELKRLTGGTLLS-RDREFIVFYRGKDFLPPA---ASSAIEERRKHEFSTSNDSKE-- 512
A EL RL+GG +L ++ I+ YRGK++ P S + RK S +
Sbjct: 239 -ASELARLSGGIVLDIQEGNTIIMYRGKNYAQPPPEIMSPKVTLPRKKALDKSKYRERLR 297
Query: 513 ---------EPELGNRH-------DNSGDNTQDEFGCTNDQKSTMHSEQKERRSAEVAIR 556
E EL + H D G N ++ C +D S + KE S V R
Sbjct: 298 ALRRYIPRLEQELVDLHAQMKLARDYKGQNAAEDITCISD--SVNSTSAKEYSSCSVRKR 355
Query: 557 RTNIRLSRVLEKKAEAEKLLAELEEERPEQYEVDKEGITEEERY 600
+ LS +E E E YEV + +E Y
Sbjct: 356 SVSDLLSESIEGSGRLED----------ENYEVSADSASESITY 389
>gi|357124470|ref|XP_003563923.1| PREDICTED: uncharacterized CRM domain-containing protein At3g25440,
chloroplastic-like [Brachypodium distachyon]
Length = 337
Score = 94.0 bits (232), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 97/183 (53%), Gaps = 15/183 (8%)
Query: 560 IRLSRVLEKKAEAEKLLAELEEERPEQYEV--------DKEGITEEERYMLRKVGLRMKA 611
+R+ LEK E+ L E + +YEV D E +TEEE++ L++ G + K
Sbjct: 132 VRIRYKLEKAKRKEEWLIE----KLRKYEVPRVPEPVHDPEILTEEEKFYLKRTGEKKKN 187
Query: 612 FLLMGRRGVFDGTVENMHLHWKHRELVKIISKQRKIEAALQEARTLEVESGGILVAVERV 671
++ +GRRGVF G V NMHLHWK E +K++ K + + A L S G ++ ++
Sbjct: 188 YVPVGRRGVFGGVVLNMHLHWKKHETMKVVCKPCRPGQVYEYAEELARLSKGTVIDIKPN 247
Query: 672 NKGYAIILYRGKNYERPACLRPKTLLTKREAMKRSLEAQRRQSLKLHVLELTRNIEKLKL 731
N II YRGKNY +P + P L+K++A+++ Q + + +L + +E +
Sbjct: 248 N---TIIFYRGKNYVQPKVMSPPDTLSKQKALEKYRYEQSLEHTSQFIEQLEKELEDYQK 304
Query: 732 QLV 734
++
Sbjct: 305 HVI 307
Score = 45.4 bits (106), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 67/137 (48%), Gaps = 11/137 (8%)
Query: 144 VRYNQLNKEVGRQKWLAKNSKMNEKEKEVPTLAELK-----LSGKELRRLRTLGIGLRKK 198
+RY +L K +++WL + + + EVP + E L+ +E L+ G +
Sbjct: 134 IRY-KLEKAKRKEEWLIEKLR----KYEVPRVPEPVHDPEILTEEEKFYLKRTGEKKKNY 188
Query: 199 LKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRTHDSLERKTGGLVV-WRSGS 257
+ +G+ G+ G+V +H W+ E +K+VC+ + + L R + G V+ + +
Sbjct: 189 VPVGRRGVFGGVVLNMHLHWKKHETMKVVCKPCRPGQVYEYAEELARLSKGTVIDIKPNN 248
Query: 258 KIILYRGADYKYPYFLA 274
II YRG +Y P ++
Sbjct: 249 TIIFYRGKNYVQPKVMS 265
Score = 45.1 bits (105), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 47/97 (48%), Gaps = 2/97 (2%)
Query: 399 LTNDEMTTLRRLGRPLPCHFALGRNRNLQGLAAAIVKLWEKCEIAKIAVKRGAQNTNSEM 458
LT +E L+R G + +GR G+ + W+K E K+ K E
Sbjct: 170 LTEEEKFYLKRTGEKKKNYVPVGRRGVFGGVVLNMHLHWKKHETMKVVCKPCRPGQVYE- 228
Query: 459 MAQELKRLTGGTLLS-RDREFIVFYRGKDFLPPAASS 494
A+EL RL+ GT++ + I+FYRGK+++ P S
Sbjct: 229 YAEELARLSKGTVIDIKPNNTIIFYRGKNYVQPKVMS 265
>gi|162459283|ref|NP_001105859.1| LOC732768 [Zea mays]
gi|89212802|gb|ABD63903.1| CFM6 [Zea mays]
gi|413918693|gb|AFW58625.1| hypothetical protein ZEAMMB73_217436 [Zea mays]
Length = 338
Score = 94.0 bits (232), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 62/196 (31%), Positives = 101/196 (51%), Gaps = 15/196 (7%)
Query: 560 IRLSRVLEKKAEAEKLLAELEEERPEQYEV--------DKEGITEEERYMLRKVGLRMKA 611
+R+ LEK E+ L E + +YEV D E +TEEE++ L++ G + K
Sbjct: 132 VRIRYKLEKAKRKEEWLIE----KLRKYEVPRTPEPVHDPEILTEEEKFYLKRTGEKKKN 187
Query: 612 FLLMGRRGVFDGTVENMHLHWKHRELVKIISKQRKIEAALQEARTLEVESGGILVAVERV 671
++ +GRRGVF G V NMHLHWK E VK++ K + + A L S G ++ ++
Sbjct: 188 YVPVGRRGVFGGVVLNMHLHWKKHETVKVVCKPCRPGQVYEYAEELTRLSKGTVIDIKPN 247
Query: 672 NKGYAIILYRGKNYERPACLRPKTLLTKREAMKRSLEAQRRQSLKLHVLELTRNIEKLKL 731
N I+ YRGKNY +P + P L+K++A+++ Q + + +L + +E K
Sbjct: 248 N---TIMFYRGKNYVQPKVMSPPETLSKQKALEKYRYLQSLEHTSQFIEKLEKELEDYKK 304
Query: 732 QLVKDKEANSLETIDE 747
+ K N I++
Sbjct: 305 HVALFKNHNKGVAIEK 320
Score = 44.7 bits (104), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 48/100 (48%), Gaps = 2/100 (2%)
Query: 399 LTNDEMTTLRRLGRPLPCHFALGRNRNLQGLAAAIVKLWEKCEIAKIAVKRGAQNTNSEM 458
LT +E L+R G + +GR G+ + W+K E K+ K E
Sbjct: 170 LTEEEKFYLKRTGEKKKNYVPVGRRGVFGGVVLNMHLHWKKHETVKVVCKPCRPGQVYE- 228
Query: 459 MAQELKRLTGGTLLS-RDREFIVFYRGKDFLPPAASSAIE 497
A+EL RL+ GT++ + I+FYRGK+++ P S E
Sbjct: 229 YAEELTRLSKGTVIDIKPNNTIMFYRGKNYVQPKVMSPPE 268
Score = 42.4 bits (98), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 66/137 (48%), Gaps = 11/137 (8%)
Query: 144 VRYNQLNKEVGRQKWLAKNSKMNEKEKEVPTLAELK-----LSGKELRRLRTLGIGLRKK 198
+RY +L K +++WL + + + EVP E L+ +E L+ G +
Sbjct: 134 IRY-KLEKAKRKEEWLIEKLR----KYEVPRTPEPVHDPEILTEEEKFYLKRTGEKKKNY 188
Query: 199 LKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRTHDSLERKTGGLVV-WRSGS 257
+ +G+ G+ G+V +H W+ E VK+VC+ + + L R + G V+ + +
Sbjct: 189 VPVGRRGVFGGVVLNMHLHWKKHETVKVVCKPCRPGQVYEYAEELTRLSKGTVIDIKPNN 248
Query: 258 KIILYRGADYKYPYFLA 274
I+ YRG +Y P ++
Sbjct: 249 TIMFYRGKNYVQPKVMS 265
>gi|125555042|gb|EAZ00648.1| hypothetical protein OsI_22670 [Oryza sativa Indica Group]
Length = 304
Score = 92.8 bits (229), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 59/164 (35%), Positives = 88/164 (53%), Gaps = 15/164 (9%)
Query: 560 IRLSRVLEKKAEAEKLLAELEEERPEQYEV--------DKEGITEEERYMLRKVGLRMKA 611
+R+ LEK E+ L E + +YEV D E +TEEE++ L++ G + K
Sbjct: 120 VRIRYKLEKAKRKEEWLIE----KLRKYEVPRSPEPVHDPEILTEEEKFYLKRTGEKKKN 175
Query: 612 FLLMGRRGVFDGTVENMHLHWKHRELVKIISKQRKIEAALQEARTLEVESGGILVAVERV 671
++ +GRRGVF G V NMHLHWK E VK+I K + + A L S G ++ ++
Sbjct: 176 YVPVGRRGVFGGVVLNMHLHWKKHETVKVICKPCRPGQVYEYAEELTRLSKGTVIDIKPN 235
Query: 672 NKGYAIILYRGKNYERPACLRPKTLLTKREAMKRSLEAQRRQSL 715
N II YRGKNY +P + P L+K++ K + Q+ +L
Sbjct: 236 N---TIIFYRGKNYVQPKVMSPPDTLSKQKLEKELEDYQKHVAL 276
Score = 45.4 bits (106), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 70/152 (46%), Gaps = 6/152 (3%)
Query: 144 VRYNQLNKEVGRQKWLAKNSKMNEKEKEV-PTLAELKLSGKELRRLRTLGIGLRKKLKIG 202
+RY +L K +++WL + + E + P L+ +E L+ G + + +G
Sbjct: 122 IRY-KLEKAKRKEEWLIEKLRKYEVPRSPEPVHDPEILTEEEKFYLKRTGEKKKNYVPVG 180
Query: 203 KAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRTHDSLERKTGGLVV-WRSGSKIIL 261
+ G+ G+V +H W+ E VK++C+ + + L R + G V+ + + II
Sbjct: 181 RRGVFGGVVLNMHLHWKKHETVKVICKPCRPGQVYEYAEELTRLSKGTVIDIKPNNTIIF 240
Query: 262 YRGADYKYPYFLADESSTDGASSDDLPNQLVD 293
YRG +Y P + S D S L +L D
Sbjct: 241 YRGKNYVQPKVM---SPPDTLSKQKLEKELED 269
Score = 44.7 bits (104), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 47/97 (48%), Gaps = 2/97 (2%)
Query: 399 LTNDEMTTLRRLGRPLPCHFALGRNRNLQGLAAAIVKLWEKCEIAKIAVKRGAQNTNSEM 458
LT +E L+R G + +GR G+ + W+K E K+ K E
Sbjct: 158 LTEEEKFYLKRTGEKKKNYVPVGRRGVFGGVVLNMHLHWKKHETVKVICKPCRPGQVYE- 216
Query: 459 MAQELKRLTGGTLLS-RDREFIVFYRGKDFLPPAASS 494
A+EL RL+ GT++ + I+FYRGK+++ P S
Sbjct: 217 YAEELTRLSKGTVIDIKPNNTIIFYRGKNYVQPKVMS 253
>gi|356544514|ref|XP_003540695.1| PREDICTED: uncharacterized protein LOC100796393 [Glycine max]
Length = 426
Score = 92.8 bits (229), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 60/167 (35%), Positives = 92/167 (55%), Gaps = 15/167 (8%)
Query: 561 RLSRVLEKKAEAEKLLAELEEERPEQYEVDK--------EGITEEERYMLRKVGLRMKAF 612
R+ +EK E LL E R ++YEV K + +T EER+ L+K+ + +
Sbjct: 135 RIKYKIEKARIKEALLIE----RLKRYEVPKAQGPVVKPDDLTGEERFYLKKMAQKRSNY 190
Query: 613 LLMGRRGVFDGTVENMHLHWKHRELVKIISKQRKIEAALQEARTLEVESGGILVAVERVN 672
L +GRRG+F G V NMH+HWK E VK+ K K + A+ L SGGI + + +
Sbjct: 191 LQIGRRGLFGGVVLNMHMHWKKHETVKVFCKPCKPGQVHEYAQELARLSGGIPLQIIGDD 250
Query: 673 KGYAIILYRGKNYERPACLRPKTLLTKREAMKRSLEAQRRQSLKLHV 719
II YRGKNYE+P + P L+K++A+++S Q +S++ +
Sbjct: 251 ---TIIFYRGKNYEQPEVMSPIDTLSKKKALEKSKYEQSLESVRRFI 294
Score = 49.3 bits (116), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 1/99 (1%)
Query: 173 PTLAELKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLC 232
P + L+G+E L+ + L+IG+ G+ G+V +H W+ E VK+ C+
Sbjct: 165 PVVKPDDLTGEERFYLKKMAQKRSNYLQIGRRGLFGGVVLNMHMHWKKHETVKVFCKPCK 224
Query: 233 RLNMKRTHDSLERKTGGLVVWRSGSK-IILYRGADYKYP 270
+ L R +GG+ + G II YRG +Y+ P
Sbjct: 225 PGQVHEYAQELARLSGGIPLQIIGDDTIIFYRGKNYEQP 263
Score = 45.4 bits (106), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 48/100 (48%), Gaps = 2/100 (2%)
Query: 399 LTNDEMTTLRRLGRPLPCHFALGRNRNLQGLAAAIVKLWEKCEIAKIAVKRGAQNTNSEM 458
LT +E L+++ + + +GR G+ + W+K E K+ K E
Sbjct: 172 LTGEERFYLKKMAQKRSNYLQIGRRGLFGGVVLNMHMHWKKHETVKVFCKPCKPGQVHEY 231
Query: 459 MAQELKRLTGGTLLSR-DREFIVFYRGKDFLPPAASSAIE 497
AQEL RL+GG L + I+FYRGK++ P S I+
Sbjct: 232 -AQELARLSGGIPLQIIGDDTIIFYRGKNYEQPEVMSPID 270
>gi|15226402|ref|NP_180415.1| RNA-binding CRS1 / YhbY (CRM) domain protein [Arabidopsis thaliana]
gi|4510396|gb|AAD21483.1| hypothetical protein [Arabidopsis thaliana]
gi|44917583|gb|AAS49116.1| At2g28480 [Arabidopsis thaliana]
gi|110741747|dbj|BAE98819.1| hypothetical protein [Arabidopsis thaliana]
gi|330253035|gb|AEC08129.1| RNA-binding CRS1 / YhbY (CRM) domain protein [Arabidopsis thaliana]
Length = 372
Score = 92.4 bits (228), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 62/164 (37%), Positives = 86/164 (52%), Gaps = 15/164 (9%)
Query: 561 RLSRVLEKKAEAEKLLAELEEERPEQYEVDK--------EGITEEERYMLRKVGLRMKAF 612
R+ LEK E LL E R ++YEV K IT EER+ L+K+G + +
Sbjct: 127 RIKYKLEKAKIKEALLIE----RLKRYEVAKVQGPEVRPHEITGEERFYLKKMGQKRSNY 182
Query: 613 LLMGRRGVFDGTVENMHLHWKHRELVKIISKQRKIEAALQEARTLEVESGGILVAVERVN 672
+ +GRRGVF G + NMHLHWK E VK+I K Q A L SGG+ V + +
Sbjct: 183 VPIGRRGVFGGVILNMHLHWKKHETVKVICNNSKPGQVQQYAEELAKLSGGVPVNIIGDD 242
Query: 673 KGYAIILYRGKNYERPACLRPKTLLTKREAMKRSLEAQRRQSLK 716
II YRGK Y +P + P L+K+ A ++S Q +S++
Sbjct: 243 ---TIIFYRGKGYVQPQVMSPIDTLSKKRAYEKSKYEQSLESVR 283
Score = 48.1 bits (113), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 51/99 (51%), Gaps = 1/99 (1%)
Query: 173 PTLAELKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLC 232
P + +++G+E L+ +G + IG+ G+ G++ +H W+ E VK++C +
Sbjct: 157 PEVRPHEITGEERFYLKKMGQKRSNYVPIGRRGVFGGVILNMHLHWKKHETVKVICNNSK 216
Query: 233 RLNMKRTHDSLERKTGGLVVWRSG-SKIILYRGADYKYP 270
+++ + L + +GG+ V G II YRG Y P
Sbjct: 217 PGQVQQYAEELAKLSGGVPVNIIGDDTIIFYRGKGYVQP 255
Score = 43.9 bits (102), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 64/125 (51%), Gaps = 10/125 (8%)
Query: 395 VQP-KLTNDEMTTLRRLGRPLPCHFALGRNRNLQGLAAAIVKLWEKCEIAKIAVKRGAQN 453
V+P ++T +E L+++G+ + +GR G+ + W+K E K+ + ++
Sbjct: 159 VRPHEITGEERFYLKKMGQKRSNYVPIGRRGVFGGVILNMHLHWKKHETVKV-ICNNSKP 217
Query: 454 TNSEMMAQELKRLTGGT---LLSRDREFIVFYRGKDFLPPAASSAIE---ERRKHEFSTS 507
+ A+EL +L+GG ++ D I+FYRGK ++ P S I+ ++R +E S
Sbjct: 218 GQVQQYAEELAKLSGGVPVNIIGDDT--IIFYRGKGYVQPQVMSPIDTLSKKRAYEKSKY 275
Query: 508 NDSKE 512
S E
Sbjct: 276 EQSLE 280
>gi|357439975|ref|XP_003590265.1| CRM domain-containing protein, putative [Medicago truncatula]
gi|355479313|gb|AES60516.1| CRM domain-containing protein, putative [Medicago truncatula]
Length = 443
Score = 92.0 bits (227), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 105/185 (56%), Gaps = 8/185 (4%)
Query: 562 LSRVLEKKAEAEKLLAELEEERP-EQYEV--DKEGITEEERYMLRKVGLRMKAFLLMGRR 618
L ++L+ + + E+L L++ P E E D E +T EE + K+GL+ K ++ +GRR
Sbjct: 123 LYKLLKARKKEERLREALKKIEPTESSETIHDPEILTPEEHFFFLKMGLKSKNYVPVGRR 182
Query: 619 GVFDGTVENMHLHWKHRELVKIISKQRKIEAALQEARTLEVESGGILVAVERVNKGYAII 678
G++ G + NMHLHWK + ++++ K E + A L +GGI++ + + II
Sbjct: 183 GIYQGVILNMHLHWKKHQTLQVVVKTFSAEEVKEIATELARLTGGIVLGIHEED---TII 239
Query: 679 LYRGKNYERP--ACLRPKTLLTKREAMKRSLEAQRRQSLKLHVLELTRNIEKLKLQLVKD 736
+YRGKNY +P + P+ L +++A+ +S ++++ ++ +L + +E L+ Q
Sbjct: 240 MYRGKNYSQPPTEIMSPRVTLPRKKALDKSKYRDGLRAVRRYIPKLEQELEILRAQFQST 299
Query: 737 KEANS 741
E+N+
Sbjct: 300 AESNT 304
Score = 50.8 bits (120), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 45/83 (54%), Gaps = 3/83 (3%)
Query: 191 LGIGLRKK--LKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRTHDSLERKTG 248
L +GL+ K + +G+ GI +G++ +H W+ + +++V + +K L R TG
Sbjct: 167 LKMGLKSKNYVPVGRRGIYQGVILNMHLHWKKHQTLQVVVKTFSAEEVKEIATELARLTG 226
Query: 249 GLVV-WRSGSKIILYRGADYKYP 270
G+V+ II+YRG +Y P
Sbjct: 227 GIVLGIHEEDTIIMYRGKNYSQP 249
Score = 42.7 bits (99), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 47/93 (50%), Gaps = 2/93 (2%)
Query: 399 LTNDEMTTLRRLGRPLPCHFALGRNRNLQGLAAAIVKLWEKCEIAKIAVKRGAQNTNSEM 458
LT +E ++G + +GR QG+ + W+K + ++ VK + E+
Sbjct: 158 LTPEEHFFFLKMGLKSKNYVPVGRRGIYQGVILNMHLHWKKHQTLQVVVKTFSAEEVKEI 217
Query: 459 MAQELKRLTGGTLLS-RDREFIVFYRGKDFLPP 490
A EL RLTGG +L + + I+ YRGK++ P
Sbjct: 218 -ATELARLTGGIVLGIHEEDTIIMYRGKNYSQP 249
>gi|297822421|ref|XP_002879093.1| hypothetical protein ARALYDRAFT_901658 [Arabidopsis lyrata subsp.
lyrata]
gi|297324932|gb|EFH55352.1| hypothetical protein ARALYDRAFT_901658 [Arabidopsis lyrata subsp.
lyrata]
Length = 345
Score = 91.7 bits (226), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 60/160 (37%), Positives = 84/160 (52%), Gaps = 7/160 (4%)
Query: 561 RLSRVLEKKAEAEKLLAE----LEEERPEQYEVDKEGITEEERYMLRKVGLRMKAFLLMG 616
R+ LEK E LL E E + + EV IT EER+ L+K+G + ++ +G
Sbjct: 124 RIKYKLEKAKIKEALLIEKLKRYEVAKVQGPEVRPHEITGEERFYLKKMGQKRSNYVPIG 183
Query: 617 RRGVFDGTVENMHLHWKHRELVKIISKQRKIEAALQEARTLEVESGGILVAVERVNKGYA 676
RRGVF G + NMHLHWK E VK+I K Q A L SGG+ V + +
Sbjct: 184 RRGVFGGVILNMHLHWKKHETVKVICNNSKPGQVQQYAEELAKLSGGVPVNIIGDD---T 240
Query: 677 IILYRGKNYERPACLRPKTLLTKREAMKRSLEAQRRQSLK 716
II YRGK Y +P + P L+K+ A ++S Q +S++
Sbjct: 241 IIFYRGKGYVQPQVMSPIDTLSKKRAYEKSKYEQSLESVR 280
Score = 48.5 bits (114), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 53/103 (51%), Gaps = 1/103 (0%)
Query: 173 PTLAELKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLC 232
P + +++G+E L+ +G + IG+ G+ G++ +H W+ E VK++C +
Sbjct: 154 PEVRPHEITGEERFYLKKMGQKRSNYVPIGRRGVFGGVILNMHLHWKKHETVKVICNNSK 213
Query: 233 RLNMKRTHDSLERKTGGLVVWRSGSK-IILYRGADYKYPYFLA 274
+++ + L + +GG+ V G II YRG Y P ++
Sbjct: 214 PGQVQQYAEELAKLSGGVPVNIIGDDTIIFYRGKGYVQPQVMS 256
Score = 44.3 bits (103), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 64/125 (51%), Gaps = 10/125 (8%)
Query: 395 VQP-KLTNDEMTTLRRLGRPLPCHFALGRNRNLQGLAAAIVKLWEKCEIAKIAVKRGAQN 453
V+P ++T +E L+++G+ + +GR G+ + W+K E K+ + ++
Sbjct: 156 VRPHEITGEERFYLKKMGQKRSNYVPIGRRGVFGGVILNMHLHWKKHETVKV-ICNNSKP 214
Query: 454 TNSEMMAQELKRLTGGT---LLSRDREFIVFYRGKDFLPPAASSAIE---ERRKHEFSTS 507
+ A+EL +L+GG ++ D I+FYRGK ++ P S I+ ++R +E S
Sbjct: 215 GQVQQYAEELAKLSGGVPVNIIGDDT--IIFYRGKGYVQPQVMSPIDTLSKKRAYEKSKY 272
Query: 508 NDSKE 512
S E
Sbjct: 273 EQSLE 277
>gi|255585329|ref|XP_002533362.1| conserved hypothetical protein [Ricinus communis]
gi|223526802|gb|EEF29024.1| conserved hypothetical protein [Ricinus communis]
Length = 412
Score = 91.7 bits (226), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 82/314 (26%), Positives = 151/314 (48%), Gaps = 38/314 (12%)
Query: 544 EQKERRSAE------VAIRRTNIRLSRVLEK---KAEAEKLLAELEEERPEQYEVDK--- 591
E+++RR+A + ++R + + E+ K E K+ L ER ++YEV K
Sbjct: 77 EKEKRRAANRRDPRCLTVKRKKQKFANAEERIKYKLERAKIKEALLVERLKRYEVPKVQG 136
Query: 592 -----EGITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVENMHLHWKHRELVKIISKQRK 646
+T EER+ ++K+ + ++ +GRRGVF G + NMH+HWK E VK+I K
Sbjct: 137 PEVKPHDLTGEERFFMKKMAQKQSNYVPLGRRGVFGGVILNMHMHWKKHETVKVICNFCK 196
Query: 647 IEAALQEARTLEVESGGILVAVERVNKGYAIILYRGKNYERPACLRPKTLLTKREAMKRS 706
+ A+ + SGGI + V + II YRGKNY +P + P L+K+ A+++S
Sbjct: 197 PGQVHEYAQEIARLSGGIPIQVIGDD---TIIFYRGKNYVQPEVMSPIDTLSKKRALEKS 253
Query: 707 LEAQRRQSLKLHVLELTRNIEKLKLQLVKDKEANSLETIDESILPLVKEEIGDMQPAECM 766
Q +S++ + I + +L+L A + D ++L ++ D + + +
Sbjct: 254 KYEQSLESVRRFIA-----IAEKELELYYRHIALYGDPNDRNLLSVLDSPTNDFKESGEL 308
Query: 767 RSDTSHEVNVQARG------ECGADLTSTESNDTGDATIDGPPAIQQDKQTES----LTH 816
R ++++ + + G E D T +E ++ D + + D T+S +
Sbjct: 309 RKESNY---LSSHGFAPGVSETEDDSTDSEVSEIEDEDVSASESDSTDSITDSDDEEIQK 365
Query: 817 NGISINEIESKSSL 830
GIS+ + S++
Sbjct: 366 EGISLMTVMRSSTM 379
Score = 47.0 bits (110), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 51/104 (49%), Gaps = 3/104 (2%)
Query: 173 PTLAELKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLC 232
P + L+G+E ++ + + +G+ G+ G++ +H W+ E VK++C + C
Sbjct: 137 PEVKPHDLTGEERFFMKKMAQKQSNYVPLGRRGVFGGVILNMHMHWKKHETVKVIC-NFC 195
Query: 233 RLNMKRTH-DSLERKTGGLVVWRSGSK-IILYRGADYKYPYFLA 274
+ + + R +GG+ + G II YRG +Y P ++
Sbjct: 196 KPGQVHEYAQEIARLSGGIPIQVIGDDTIIFYRGKNYVQPEVMS 239
Score = 43.9 bits (102), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 48/100 (48%), Gaps = 2/100 (2%)
Query: 399 LTNDEMTTLRRLGRPLPCHFALGRNRNLQGLAAAIVKLWEKCEIAKIAVKRGAQNTNSEM 458
LT +E ++++ + + LGR G+ + W+K E K+ E
Sbjct: 144 LTGEERFFMKKMAQKQSNYVPLGRRGVFGGVILNMHMHWKKHETVKVICNFCKPGQVHEY 203
Query: 459 MAQELKRLTGGTLLSR-DREFIVFYRGKDFLPPAASSAIE 497
AQE+ RL+GG + + I+FYRGK+++ P S I+
Sbjct: 204 -AQEIARLSGGIPIQVIGDDTIIFYRGKNYVQPEVMSPID 242
>gi|224132018|ref|XP_002321235.1| predicted protein [Populus trichocarpa]
gi|222862008|gb|EEE99550.1| predicted protein [Populus trichocarpa]
Length = 413
Score = 90.1 bits (222), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 102/185 (55%), Gaps = 8/185 (4%)
Query: 547 ERRSAEVAIRRTNIRLSRVLEKKAEAEKLLAELEEERPEQYEVDKEGITEEERYMLRKVG 606
ER +AE I +L + K+ + L ++E + + D E +T EE + K+G
Sbjct: 86 ERMTAEEKIL---YKLRKAQRKEERFVQALKKIEPKESSEATHDPEILTPEEHFFFLKMG 142
Query: 607 LRMKAFLLMGRRGVFDGTVENMHLHWKHRELVKIISKQRKIEAALQEARTLEVESGGILV 666
L+ K ++ +GRRG++ G + NMHLHWK + +K++ K E + A L +GGI++
Sbjct: 143 LKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVVVKTFTPEEVKEIAAELARFTGGIVL 202
Query: 667 AVERVNKGYAIILYRGKNYERPA--CLRPKTLLTKREAMKRSLEAQRRQSLKLHVLELTR 724
+ N II+YRGKNY +P + P+ L++++A+ +S ++L+ ++ L +
Sbjct: 203 DIHEEN---TIIMYRGKNYSQPPTEIMSPRVTLSRKKALDKSKCRDGLRALRRYIPRLQQ 259
Query: 725 NIEKL 729
++E L
Sbjct: 260 DLELL 264
Score = 50.1 bits (118), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 191 LGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRTHDSLERKTGGL 250
+G+ + + +G+ GI +G++ +H W+ + +K+V + +K L R TGG+
Sbjct: 141 MGLKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVVVKTFTPEEVKEIAAELARFTGGI 200
Query: 251 VV-WRSGSKIILYRGADYKYP 270
V+ + II+YRG +Y P
Sbjct: 201 VLDIHEENTIIMYRGKNYSQP 221
Score = 42.4 bits (98), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 44/93 (47%), Gaps = 2/93 (2%)
Query: 399 LTNDEMTTLRRLGRPLPCHFALGRNRNLQGLAAAIVKLWEKCEIAKIAVKRGAQNTNSEM 458
LT +E ++G + +GR QG+ + W+K + K+ VK E+
Sbjct: 130 LTPEEHFFFLKMGLKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVVVKTFTPEEVKEI 189
Query: 459 MAQELKRLTGGTLLSRDRE-FIVFYRGKDFLPP 490
A EL R TGG +L E I+ YRGK++ P
Sbjct: 190 AA-ELARFTGGIVLDIHEENTIIMYRGKNYSQP 221
>gi|57900097|dbj|BAD88159.1| group II intron splicing factor CRS1-like [Oryza sativa Japonica
Group]
gi|57900277|dbj|BAD87110.1| group II intron splicing factor CRS1-like [Oryza sativa Japonica
Group]
gi|215695021|dbj|BAG90212.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 417
Score = 89.7 bits (221), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 54/162 (33%), Positives = 88/162 (54%), Gaps = 11/162 (6%)
Query: 566 LEKKAEAEKLLAELEEERPEQYEVDK--------EGITEEERYMLRKVGLRMKAFLLMGR 617
L+ K E KL + E+ ++YE+ K + + EER+ L+KV + ++ +GR
Sbjct: 136 LKYKIEKAKLKEAMLVEKLKKYEIAKAQGPMAKQDDLDGEERFYLKKVSQKKSNYVPVGR 195
Query: 618 RGVFDGTVENMHLHWKHRELVKIISKQRKIEAALQEARTLEVESGGILVAVERVNKGYAI 677
RGVF G + NMHLHWK E VK+I K K + A + SGGI + + I
Sbjct: 196 RGVFGGVILNMHLHWKKHETVKVICKPCKPGQIQEYASEIARLSGGIPINTIGND---TI 252
Query: 678 ILYRGKNYERPACLRPKTLLTKREAMKRSLEAQRRQSLKLHV 719
+ YRGKNY +P + P L+K++A+++S Q ++++ +
Sbjct: 253 VFYRGKNYVQPDVMSPVDTLSKKKALEKSKYEQSLETVRRFI 294
Score = 47.0 bits (110), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 48/99 (48%), Gaps = 1/99 (1%)
Query: 173 PTLAELKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLC 232
P + L G+E L+ + + +G+ G+ G++ +H W+ E VK++C+
Sbjct: 165 PMAKQDDLDGEERFYLKKVSQKKSNYVPVGRRGVFGGVILNMHLHWKKHETVKVICKPCK 224
Query: 233 RLNMKRTHDSLERKTGGLVVWRSGSK-IILYRGADYKYP 270
++ + R +GG+ + G+ I+ YRG +Y P
Sbjct: 225 PGQIQEYASEIARLSGGIPINTIGNDTIVFYRGKNYVQP 263
Score = 42.7 bits (99), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 75/173 (43%), Gaps = 20/173 (11%)
Query: 392 PYGVQPKLTNDEMTTLRRLGRPLPCHFALGRNRNLQGLAAAIVKLWEKCEIAKIAVKRGA 451
P Q L +E L+++ + + +GR G+ + W+K E K+ K
Sbjct: 165 PMAKQDDLDGEERFYLKKVSQKKSNYVPVGRRGVFGGVILNMHLHWKKHETVKVICKPCK 224
Query: 452 QNTNSEMMAQELKRLTGGTLLSR-DREFIVFYRGKDFLPPAASSAIE--------ERRKH 502
E A E+ RL+GG ++ + IVFYRGK+++ P S ++ E+ K+
Sbjct: 225 PGQIQEY-ASEIARLSGGIPINTIGNDTIVFYRGKNYVQPDVMSPVDTLSKKKALEKSKY 283
Query: 503 EFSTSN------DSKEEPELGNRHDNSGDNTQ----DEFGCTNDQKSTMHSEQ 545
E S S++E EL RH N Q D C + + +++ E+
Sbjct: 284 EQSLETVRRFIAVSEKELELYYRHIALYGNPQSQNVDPVYCDDRRAASLKMEE 336
>gi|225448146|ref|XP_002263852.1| PREDICTED: uncharacterized CRM domain-containing protein At3g25440,
chloroplastic-like [Vitis vinifera]
Length = 401
Score = 89.7 bits (221), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 65/222 (29%), Positives = 120/222 (54%), Gaps = 13/222 (5%)
Query: 547 ERRSAEVAIRRTNIRLSRVLEKKAEAEKLLAELEEERPEQYEVDKEGITEEERYMLRKVG 606
ER +AE I + R E+ AEA L ++E + + D E +T EE + K+G
Sbjct: 69 ERMTAEEKILYKLRKARRKEERLAEA---LTKIEPKESSETTHDPEILTPEEHFFFLKMG 125
Query: 607 LRMKAFLLMGRRGVFDGTVENMHLHWKHRELVKIISKQRKIEAALQEARTLEVESGGILV 666
L+ K ++ +GRRG++ G + NMHLHWK + ++++ K E + A L +GGI++
Sbjct: 126 LKCKNYVPIGRRGIYQGVILNMHLHWKKHQTLQVVVKTFSPEEVKEIAVELARLTGGIVL 185
Query: 667 AVERVNKGYAIILYRGKNYERP--ACLRPKTLLTKREAMKRSLEAQRRQSLKLHVLELTR 724
+ N II+YRGKNY +P + P+ L++++A+ +S ++++ ++ L
Sbjct: 186 DIHEEN---TIIMYRGKNYSQPPTEIMSPRITLSRKKALDKSKYRDGLRAVRKYIPRLEG 242
Query: 725 NIEKLKLQLVKDKEANSLETIDE----SILPLVKEEIGDMQP 762
++E L+ Q K + N E +++ +I + + I ++QP
Sbjct: 243 DLELLQAQ-AKMQAENKTEAVEDFQNANIDSINSQGISNLQP 283
Score = 50.4 bits (119), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 191 LGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRTHDSLERKTGGL 250
+G+ + + IG+ GI +G++ +H W+ + +++V + +K L R TGG+
Sbjct: 124 MGLKCKNYVPIGRRGIYQGVILNMHLHWKKHQTLQVVVKTFSPEEVKEIAVELARLTGGI 183
Query: 251 VV-WRSGSKIILYRGADYKYP 270
V+ + II+YRG +Y P
Sbjct: 184 VLDIHEENTIIMYRGKNYSQP 204
Score = 42.4 bits (98), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 46/93 (49%), Gaps = 2/93 (2%)
Query: 399 LTNDEMTTLRRLGRPLPCHFALGRNRNLQGLAAAIVKLWEKCEIAKIAVKRGAQNTNSEM 458
LT +E ++G + +GR QG+ + W+K + ++ VK + E+
Sbjct: 113 LTPEEHFFFLKMGLKCKNYVPIGRRGIYQGVILNMHLHWKKHQTLQVVVKTFSPEEVKEI 172
Query: 459 MAQELKRLTGGTLLSRDRE-FIVFYRGKDFLPP 490
A EL RLTGG +L E I+ YRGK++ P
Sbjct: 173 -AVELARLTGGIVLDIHEENTIIMYRGKNYSQP 204
>gi|57900098|dbj|BAD88160.1| group II intron splicing factor CRS1-like [Oryza sativa Japonica
Group]
gi|57900278|dbj|BAD87111.1| group II intron splicing factor CRS1-like [Oryza sativa Japonica
Group]
Length = 394
Score = 89.7 bits (221), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 54/162 (33%), Positives = 88/162 (54%), Gaps = 11/162 (6%)
Query: 566 LEKKAEAEKLLAELEEERPEQYEVDK--------EGITEEERYMLRKVGLRMKAFLLMGR 617
L+ K E KL + E+ ++YE+ K + + EER+ L+KV + ++ +GR
Sbjct: 136 LKYKIEKAKLKEAMLVEKLKKYEIAKAQGPMAKQDDLDGEERFYLKKVSQKKSNYVPVGR 195
Query: 618 RGVFDGTVENMHLHWKHRELVKIISKQRKIEAALQEARTLEVESGGILVAVERVNKGYAI 677
RGVF G + NMHLHWK E VK+I K K + A + SGGI + + I
Sbjct: 196 RGVFGGVILNMHLHWKKHETVKVICKPCKPGQIQEYASEIARLSGGIPINTIGND---TI 252
Query: 678 ILYRGKNYERPACLRPKTLLTKREAMKRSLEAQRRQSLKLHV 719
+ YRGKNY +P + P L+K++A+++S Q ++++ +
Sbjct: 253 VFYRGKNYVQPDVMSPVDTLSKKKALEKSKYEQSLETVRRFI 294
Score = 47.4 bits (111), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 48/99 (48%), Gaps = 1/99 (1%)
Query: 173 PTLAELKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLC 232
P + L G+E L+ + + +G+ G+ G++ +H W+ E VK++C+
Sbjct: 165 PMAKQDDLDGEERFYLKKVSQKKSNYVPVGRRGVFGGVILNMHLHWKKHETVKVICKPCK 224
Query: 233 RLNMKRTHDSLERKTGGLVVWRSGSK-IILYRGADYKYP 270
++ + R +GG+ + G+ I+ YRG +Y P
Sbjct: 225 PGQIQEYASEIARLSGGIPINTIGNDTIVFYRGKNYVQP 263
Score = 42.7 bits (99), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 75/173 (43%), Gaps = 20/173 (11%)
Query: 392 PYGVQPKLTNDEMTTLRRLGRPLPCHFALGRNRNLQGLAAAIVKLWEKCEIAKIAVKRGA 451
P Q L +E L+++ + + +GR G+ + W+K E K+ K
Sbjct: 165 PMAKQDDLDGEERFYLKKVSQKKSNYVPVGRRGVFGGVILNMHLHWKKHETVKVICKPCK 224
Query: 452 QNTNSEMMAQELKRLTGGTLLSR-DREFIVFYRGKDFLPPAASSAIE--------ERRKH 502
E A E+ RL+GG ++ + IVFYRGK+++ P S ++ E+ K+
Sbjct: 225 PGQIQEY-ASEIARLSGGIPINTIGNDTIVFYRGKNYVQPDVMSPVDTLSKKKALEKSKY 283
Query: 503 EFSTSN------DSKEEPELGNRHDNSGDNTQ----DEFGCTNDQKSTMHSEQ 545
E S S++E EL RH N Q D C + + +++ E+
Sbjct: 284 EQSLETVRRFIAVSEKELELYYRHIALYGNPQSQNVDPVYCDDRRAASLKMEE 336
>gi|115442347|ref|NP_001045453.1| Os01g0958400 [Oryza sativa Japonica Group]
gi|57900096|dbj|BAD88158.1| group II intron splicing factor CRS1-like [Oryza sativa Japonica
Group]
gi|57900276|dbj|BAD87109.1| group II intron splicing factor CRS1-like [Oryza sativa Japonica
Group]
gi|113534984|dbj|BAF07367.1| Os01g0958400 [Oryza sativa Japonica Group]
gi|215768161|dbj|BAH00390.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218189771|gb|EEC72198.1| hypothetical protein OsI_05277 [Oryza sativa Indica Group]
gi|222619906|gb|EEE56038.1| hypothetical protein OsJ_04827 [Oryza sativa Japonica Group]
Length = 415
Score = 89.7 bits (221), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 54/162 (33%), Positives = 88/162 (54%), Gaps = 11/162 (6%)
Query: 566 LEKKAEAEKLLAELEEERPEQYEVDK--------EGITEEERYMLRKVGLRMKAFLLMGR 617
L+ K E KL + E+ ++YE+ K + + EER+ L+KV + ++ +GR
Sbjct: 136 LKYKIEKAKLKEAMLVEKLKKYEIAKAQGPMAKQDDLDGEERFYLKKVSQKKSNYVPVGR 195
Query: 618 RGVFDGTVENMHLHWKHRELVKIISKQRKIEAALQEARTLEVESGGILVAVERVNKGYAI 677
RGVF G + NMHLHWK E VK+I K K + A + SGGI + + I
Sbjct: 196 RGVFGGVILNMHLHWKKHETVKVICKPCKPGQIQEYASEIARLSGGIPINTIGND---TI 252
Query: 678 ILYRGKNYERPACLRPKTLLTKREAMKRSLEAQRRQSLKLHV 719
+ YRGKNY +P + P L+K++A+++S Q ++++ +
Sbjct: 253 VFYRGKNYVQPDVMSPVDTLSKKKALEKSKYEQSLETVRRFI 294
Score = 47.4 bits (111), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 48/99 (48%), Gaps = 1/99 (1%)
Query: 173 PTLAELKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLC 232
P + L G+E L+ + + +G+ G+ G++ +H W+ E VK++C+
Sbjct: 165 PMAKQDDLDGEERFYLKKVSQKKSNYVPVGRRGVFGGVILNMHLHWKKHETVKVICKPCK 224
Query: 233 RLNMKRTHDSLERKTGGLVVWRSGSK-IILYRGADYKYP 270
++ + R +GG+ + G+ I+ YRG +Y P
Sbjct: 225 PGQIQEYASEIARLSGGIPINTIGNDTIVFYRGKNYVQP 263
Score = 42.7 bits (99), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 75/173 (43%), Gaps = 20/173 (11%)
Query: 392 PYGVQPKLTNDEMTTLRRLGRPLPCHFALGRNRNLQGLAAAIVKLWEKCEIAKIAVKRGA 451
P Q L +E L+++ + + +GR G+ + W+K E K+ K
Sbjct: 165 PMAKQDDLDGEERFYLKKVSQKKSNYVPVGRRGVFGGVILNMHLHWKKHETVKVICKPCK 224
Query: 452 QNTNSEMMAQELKRLTGGTLLSR-DREFIVFYRGKDFLPPAASSAIE--------ERRKH 502
E A E+ RL+GG ++ + IVFYRGK+++ P S ++ E+ K+
Sbjct: 225 PGQIQEY-ASEIARLSGGIPINTIGNDTIVFYRGKNYVQPDVMSPVDTLSKKKALEKSKY 283
Query: 503 EFSTSN------DSKEEPELGNRHDNSGDNTQ----DEFGCTNDQKSTMHSEQ 545
E S S++E EL RH N Q D C + + +++ E+
Sbjct: 284 EQSLETVRRFIAVSEKELELYYRHIALYGNPQSQNVDPVYCDDRRAASLKMEE 336
>gi|242055631|ref|XP_002456961.1| hypothetical protein SORBIDRAFT_03g046420 [Sorghum bicolor]
gi|241928936|gb|EES02081.1| hypothetical protein SORBIDRAFT_03g046420 [Sorghum bicolor]
Length = 405
Score = 89.4 bits (220), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 59/160 (36%), Positives = 87/160 (54%), Gaps = 16/160 (10%)
Query: 566 LEKKAEAEKLLAELEEERPEQYEVDK--------EGITEEERYMLRKVGLRMKAFLLMGR 617
L+ K E KL E+ ++YEV K + ++ EER+ L+KV + ++ +GR
Sbjct: 137 LKYKIEKAKLKEVRLVEKLKKYEVAKAQGPMAKPDDLSGEERFYLKKVSQKKSNYVPVGR 196
Query: 618 RGVFDGTVENMHLHWKHRELVKIISKQRKIEAALQEARTLEVESGGILVAVERVNKGYAI 677
RGVF G + NMHLHWK E VK+I K K + A + SGGI V + + I
Sbjct: 197 RGVFGGVILNMHLHWKKHETVKVICKPCKPGQIQEYANEIARLSGGIPVNIIGDD---TI 253
Query: 678 ILYRGKNYERPACLRPKTLLTKREAMKR-----SLEAQRR 712
+ YRGKNY +P + P L+K++A+++ SLE RR
Sbjct: 254 VFYRGKNYVQPEVMSPIDTLSKKKALEKSKYEQSLETVRR 293
Score = 47.8 bits (112), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 73/166 (43%), Gaps = 15/166 (9%)
Query: 111 PHRI-PKYRVGHTIDDSWSTPENPVPVPGTGAAIVRYNQLNKEVGRQKWLAKNSKMNEKE 169
P RI PK G I + TPE A ++Y ++ + + K K +
Sbjct: 116 PRRIRPK---GKKIKQKFPTPE----------ARLKYKIEKAKLKEVRLVEKLKKYEVAK 162
Query: 170 KEVPTLAELKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCE 229
+ P LSG+E L+ + + +G+ G+ G++ +H W+ E VK++C+
Sbjct: 163 AQGPMAKPDDLSGEERFYLKKVSQKKSNYVPVGRRGVFGGVILNMHLHWKKHETVKVICK 222
Query: 230 DLCRLNMKRTHDSLERKTGGLVVWRSGSK-IILYRGADYKYPYFLA 274
++ + + R +GG+ V G I+ YRG +Y P ++
Sbjct: 223 PCKPGQIQEYANEIARLSGGIPVNIIGDDTIVFYRGKNYVQPEVMS 268
Score = 43.5 bits (101), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 74/163 (45%), Gaps = 23/163 (14%)
Query: 399 LTNDEMTTLRRLGRPLPCHFALGRNRNLQGLAAAIVKLWEKCEIAKIAVKRGAQNTNSEM 458
L+ +E L+++ + + +GR G+ + W+K E K+ K E
Sbjct: 173 LSGEERFYLKKVSQKKSNYVPVGRRGVFGGVILNMHLHWKKHETVKVICKPCKPGQIQEY 232
Query: 459 MAQELKRLTGG---TLLSRDREFIVFYRGKDFLPPAASSAIE--------ERRKHEFSTS 507
A E+ RL+GG ++ D IVFYRGK+++ P S I+ E+ K+E S
Sbjct: 233 -ANEIARLSGGIPVNIIGDDT--IVFYRGKNYVQPEVMSPIDTLSKKKALEKSKYEQSLE 289
Query: 508 N------DSKEEPELGNRHDNSGDNTQDE---FGCTNDQKSTM 541
S++E EL RH N Q + C +D+++++
Sbjct: 290 TVRRFIAISEKELELYYRHVALYGNPQSQKADLVCGDDRETSL 332
>gi|357521229|ref|XP_003630903.1| CRM domain-containing protein, putative [Medicago truncatula]
gi|355524925|gb|AET05379.1| CRM domain-containing protein, putative [Medicago truncatula]
Length = 318
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 54/144 (37%), Positives = 76/144 (52%), Gaps = 7/144 (4%)
Query: 560 IRLSRVLEKKAEAEKLLAE----LEEERPEQYEVDKEGITEEERYMLRKVGLRMKAFLLM 615
+R+ LEK E L E + + D E +TEEER+ L++ G + K ++ +
Sbjct: 149 VRIRYKLEKAKRKETWLIEKLRKFDVPKLPTETFDPEILTEEERHYLKRTGEKKKHYVPV 208
Query: 616 GRRGVFDGTVENMHLHWKHRELVKIISKQRKIEAALQEARTLEVESGGILVAVERVNKGY 675
GRRGVF V NMHLHWK E VK+I K K A + L S GI++ ++ N
Sbjct: 209 GRRGVFGEVVLNMHLHWKKHETVKVICKPCKPGQAHEYTEELTRPSKGIVIDIKPNN--- 265
Query: 676 AIILYRGKNYERPACLRPKTLLTK 699
II YRG+NY +P + P L+K
Sbjct: 266 IIIFYRGRNYVQPKVMSPPDTLSK 289
Score = 45.1 bits (105), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 64/141 (45%), Gaps = 3/141 (2%)
Query: 144 VRYNQLNKEVGRQKWLA-KNSKMNEKEKEVPTLAELKLSGKELRRLRTLGIGLRKKLKIG 202
+RY +L K ++ WL K K + + T L+ +E L+ G + + +G
Sbjct: 151 IRY-KLEKAKRKETWLIEKLRKFDVPKLPTETFDPEILTEEERHYLKRTGEKKKHYVPVG 209
Query: 203 KAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRTHDSLERKTGGLVV-WRSGSKIIL 261
+ G+ +V +H W+ E VK++C+ + L R + G+V+ + + II
Sbjct: 210 RRGVFGEVVLNMHLHWKKHETVKVICKPCKPGQAHEYTEELTRPSKGIVIDIKPNNIIIF 269
Query: 262 YRGADYKYPYFLADESSTDGA 282
YRG +Y P ++ + A
Sbjct: 270 YRGRNYVQPKVMSPPDTLSKA 290
>gi|224128874|ref|XP_002328988.1| predicted protein [Populus trichocarpa]
gi|222839222|gb|EEE77573.1| predicted protein [Populus trichocarpa]
Length = 342
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 62/182 (34%), Positives = 93/182 (51%), Gaps = 7/182 (3%)
Query: 560 IRLSRVLEKKAEAEKLLAE----LEEERPEQYEVDKEGITEEERYMLRKVGLRMKAFLLM 615
+R+ LEK E L E LE + D E +TEEE++ L++ G + K ++ +
Sbjct: 141 VRIRYKLEKAKRKEAWLIEKLRKLEVPKTPGEAYDPEILTEEEKHYLKRTGEKKKNYVPV 200
Query: 616 GRRGVFDGTVENMHLHWKHRELVKIISKQRKIEAALQEARTLEVESGGILVAVERVNKGY 675
GRRGVF G V NMHLHWK E VK+ K K + A L S GI + + N
Sbjct: 201 GRRGVFGGVVLNMHLHWKKHETVKVTCKPCKPGQIDEYAEELARLSKGIAIDIRPDN--- 257
Query: 676 AIILYRGKNYERPACLRPKTLLTKREAMKRSLEAQRRQSLKLHVLELTRNIEKLKLQLVK 735
II YRGKNY +P + P L+K +A+++ Q + + +L + +E + +V+
Sbjct: 258 TIIFYRGKNYVQPKIMSPPDTLSKDKALEKYRYEQSLEHTSQFIEKLEKELENYQEHVVR 317
Query: 736 DK 737
K
Sbjct: 318 YK 319
Score = 45.1 bits (105), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 56/122 (45%), Gaps = 4/122 (3%)
Query: 180 LSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRT 239
L+ +E L+ G + + +G+ G+ G+V +H W+ E VK+ C+ +
Sbjct: 179 LTEEEKHYLKRTGEKKKNYVPVGRRGVFGGVVLNMHLHWKKHETVKVTCKPCKPGQIDEY 238
Query: 240 HDSLERKTGGLVV-WRSGSKIILYRGADYKYPYFLADESSTDGASSDDLPNQLVDDEGLD 298
+ L R + G+ + R + II YRG +Y P + S D S D + ++ L+
Sbjct: 239 AEELARLSKGIAIDIRPDNTIIFYRGKNYVQPKIM---SPPDTLSKDKALEKYRYEQSLE 295
Query: 299 ET 300
T
Sbjct: 296 HT 297
Score = 42.7 bits (99), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 45/97 (46%), Gaps = 2/97 (2%)
Query: 399 LTNDEMTTLRRLGRPLPCHFALGRNRNLQGLAAAIVKLWEKCEIAKIAVKRGAQNTNSEM 458
LT +E L+R G + +GR G+ + W+K E K+ K E
Sbjct: 179 LTEEEKHYLKRTGEKKKNYVPVGRRGVFGGVVLNMHLHWKKHETVKVTCKPCKPGQIDE- 237
Query: 459 MAQELKRLTGGTLLS-RDREFIVFYRGKDFLPPAASS 494
A+EL RL+ G + R I+FYRGK+++ P S
Sbjct: 238 YAEELARLSKGIAIDIRPDNTIIFYRGKNYVQPKIMS 274
>gi|226509977|ref|NP_001151028.1| CFM6 [Zea mays]
gi|195643764|gb|ACG41350.1| CFM6 [Zea mays]
gi|238011754|gb|ACR36912.1| unknown [Zea mays]
Length = 394
Score = 88.6 bits (218), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 74/262 (28%), Positives = 126/262 (48%), Gaps = 23/262 (8%)
Query: 566 LEKKAEAEKLLAELEEERPEQYEVDK--------EGITEEERYMLRKVGLRMKAFLLMGR 617
L+ K E KL E+ ++YE+ K + ++ EER+ L+KV + ++ +GR
Sbjct: 137 LKYKIEKAKLKEARLVEKLKKYEIAKAQGPMAKVDDLSGEERFYLKKVSQKKSNYVPVGR 196
Query: 618 RGVFDGTVENMHLHWKHRELVKIISKQRKIEAALQEARTLEVESGGILVAVERVNKGYAI 677
RGVF G + NMHLHWK E VK+I K K + A + SGGI V V + I
Sbjct: 197 RGVFGGVILNMHLHWKKHETVKVICKPCKPGQIQEYANEIARLSGGIPVNVIGDD---TI 253
Query: 678 ILYRGKNYERPACLRPKTLLTKREAMKRSLEAQRRQSLKLHVL----ELTRNIEKLKLQL 733
+ YRGK+Y +P + P L+K++A+++S Q ++++ + EL + L
Sbjct: 254 VFYRGKSYVQPEVMSPVDTLSKKKALEKSKYEQSLETVRRFIAISEKELELYYRHVALYG 313
Query: 734 VKDKEANSLETIDESILPLVKEEIGDMQPAECMRSDTSHEVNVQARGECGADLTSTESND 793
+ + + L D+ L+K E D + T+H ++ D++ ++ D
Sbjct: 314 ISQSQKSDLVCGDDREASLLKMEGLDRGKGQEPHLATNHFSDLHI-----GDVSESDEED 368
Query: 794 TGDATIDGPPAIQQDKQTESLT 815
+ + D A D +TES+
Sbjct: 369 SSGSEYD---ADDDDNETESMA 387
Score = 47.8 bits (112), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 72/166 (43%), Gaps = 15/166 (9%)
Query: 111 PHRI-PKYRVGHTIDDSWSTPENPVPVPGTGAAIVRYNQLNKEVGRQKWLAKNSKMNEKE 169
P RI PK G I + TPE A ++Y ++ + + K K +
Sbjct: 116 PRRIRPK---GKKIKQKFPTPE----------ARLKYKIEKAKLKEARLVEKLKKYEIAK 162
Query: 170 KEVPTLAELKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCE 229
+ P LSG+E L+ + + +G+ G+ G++ +H W+ E VK++C+
Sbjct: 163 AQGPMAKVDDLSGEERFYLKKVSQKKSNYVPVGRRGVFGGVILNMHLHWKKHETVKVICK 222
Query: 230 DLCRLNMKRTHDSLERKTGGLVVWRSGSK-IILYRGADYKYPYFLA 274
++ + + R +GG+ V G I+ YRG Y P ++
Sbjct: 223 PCKPGQIQEYANEIARLSGGIPVNVIGDDTIVFYRGKSYVQPEVMS 268
Score = 40.0 bits (92), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 73/161 (45%), Gaps = 19/161 (11%)
Query: 399 LTNDEMTTLRRLGRPLPCHFALGRNRNLQGLAAAIVKLWEKCEIAKIAVKRGAQNTNSEM 458
L+ +E L+++ + + +GR G+ + W+K E K+ K E
Sbjct: 173 LSGEERFYLKKVSQKKSNYVPVGRRGVFGGVILNMHLHWKKHETVKVICKPCKPGQIQEY 232
Query: 459 MAQELKRLTGGTLLSR-DREFIVFYRGKDFLPPAASSAIE--------ERRKHEFSTSN- 508
A E+ RL+GG ++ + IVFYRGK ++ P S ++ E+ K+E S
Sbjct: 233 -ANEIARLSGGIPVNVIGDDTIVFYRGKSYVQPEVMSPVDTLSKKKALEKSKYEQSLETV 291
Query: 509 -----DSKEEPELGNRH---DNSGDNTQDEFGCTNDQKSTM 541
S++E EL RH + + + C +D+++++
Sbjct: 292 RRFIAISEKELELYYRHVALYGISQSQKSDLVCGDDREASL 332
>gi|449458069|ref|XP_004146770.1| PREDICTED: uncharacterized CRM domain-containing protein At3g25440,
chloroplastic-like [Cucumis sativus]
gi|449516505|ref|XP_004165287.1| PREDICTED: uncharacterized CRM domain-containing protein At3g25440,
chloroplastic-like [Cucumis sativus]
Length = 500
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 96/164 (58%), Gaps = 7/164 (4%)
Query: 590 DKEGITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVENMHLHWKHRELVKIISKQRKIEA 649
D E +T EE + K+G++ K ++ +GRRG++ G + NMHLHWK + VK++ K E
Sbjct: 207 DPEILTPEEHFYFLKMGIKGKNYVPVGRRGIYQGVILNMHLHWKKHQTVKVVVKTFSPEE 266
Query: 650 ALQEARTLEVESGGILVAVERVNKGYAIILYRGKNYERPA--CLRPKTLLTKREAMKRSL 707
+ A L +GG+++ + + II+YRGKNY +P + P+ L++++A+ +S
Sbjct: 267 VKEIAAELARLTGGLVLDIHEED---TIIMYRGKNYSQPPTEIMSPRVSLSRKKALDKSK 323
Query: 708 EAQRRQSLKLHVLELTRNIEKLKLQLVKDKEAN--SLETIDESI 749
++++ H+ +L + + L+ Q + ++N S+E + E++
Sbjct: 324 YRDGLRAVRKHIPKLEQELRFLQSQAKLNCKSNGESVEHMQETV 367
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 47/92 (51%), Gaps = 1/92 (1%)
Query: 180 LSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRT 239
L+ +E +GI + + +G+ GI +G++ +H W+ + VK+V + +K
Sbjct: 211 LTPEEHFYFLKMGIKGKNYVPVGRRGIYQGVILNMHLHWKKHQTVKVVVKTFSPEEVKEI 270
Query: 240 HDSLERKTGGLVV-WRSGSKIILYRGADYKYP 270
L R TGGLV+ II+YRG +Y P
Sbjct: 271 AAELARLTGGLVLDIHEEDTIIMYRGKNYSQP 302
Score = 43.5 bits (101), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 47/93 (50%), Gaps = 2/93 (2%)
Query: 399 LTNDEMTTLRRLGRPLPCHFALGRNRNLQGLAAAIVKLWEKCEIAKIAVKRGAQNTNSEM 458
LT +E ++G + +GR QG+ + W+K + K+ VK + E+
Sbjct: 211 LTPEEHFYFLKMGIKGKNYVPVGRRGIYQGVILNMHLHWKKHQTVKVVVKTFSPEEVKEI 270
Query: 459 MAQELKRLTGGTLLS-RDREFIVFYRGKDFLPP 490
A EL RLTGG +L + + I+ YRGK++ P
Sbjct: 271 -AAELARLTGGLVLDIHEEDTIIMYRGKNYSQP 302
>gi|357131757|ref|XP_003567501.1| PREDICTED: uncharacterized protein LOC100829186 [Brachypodium
distachyon]
Length = 402
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 89/162 (54%), Gaps = 11/162 (6%)
Query: 566 LEKKAEAEKLLAELEEERPEQYEVDK--------EGITEEERYMLRKVGLRMKAFLLMGR 617
L+ K E KL + E+ ++YEV K + + EER+ L+KV + ++ +GR
Sbjct: 139 LKYKIEKAKLKEAMLIEKLKRYEVAKAEGPVAKPDDLNGEERFYLKKVSQKKSNYVPIGR 198
Query: 618 RGVFDGTVENMHLHWKHRELVKIISKQRKIEAALQEARTLEVESGGILVAVERVNKGYAI 677
RGVF G + NMHLHWK E VK+I K K + A + SGG+ + + + +
Sbjct: 199 RGVFGGVILNMHLHWKKHETVKVICKPCKPGQIQEYASEIARLSGGVPINIVGND---TV 255
Query: 678 ILYRGKNYERPACLRPKTLLTKREAMKRSLEAQRRQSLKLHV 719
+ YRGK+Y +P + P L+K++A+++S Q ++++ +
Sbjct: 256 VFYRGKDYVQPDVMSPIDTLSKKKALEKSKYEQSLETVRRFI 297
Score = 47.8 bits (112), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 49/101 (48%), Gaps = 1/101 (0%)
Query: 171 EVPTLAELKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCED 230
E P L+G+E L+ + + IG+ G+ G++ +H W+ E VK++C+
Sbjct: 166 EGPVAKPDDLNGEERFYLKKVSQKKSNYVPIGRRGVFGGVILNMHLHWKKHETVKVICKP 225
Query: 231 LCRLNMKRTHDSLERKTGGLVVWRSGSK-IILYRGADYKYP 270
++ + R +GG+ + G+ ++ YRG DY P
Sbjct: 226 CKPGQIQEYASEIARLSGGVPINIVGNDTVVFYRGKDYVQP 266
Score = 42.4 bits (98), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 48/100 (48%), Gaps = 2/100 (2%)
Query: 399 LTNDEMTTLRRLGRPLPCHFALGRNRNLQGLAAAIVKLWEKCEIAKIAVKRGAQNTNSEM 458
L +E L+++ + + +GR G+ + W+K E K+ K E
Sbjct: 175 LNGEERFYLKKVSQKKSNYVPIGRRGVFGGVILNMHLHWKKHETVKVICKPCKPGQIQEY 234
Query: 459 MAQELKRLTGGTLLS-RDREFIVFYRGKDFLPPAASSAIE 497
A E+ RL+GG ++ + +VFYRGKD++ P S I+
Sbjct: 235 -ASEIARLSGGVPINIVGNDTVVFYRGKDYVQPDVMSPID 273
>gi|359478175|ref|XP_002266278.2| PREDICTED: uncharacterized protein LOC100250974 [Vitis vinifera]
Length = 711
Score = 87.8 bits (216), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 57/167 (34%), Positives = 88/167 (52%), Gaps = 15/167 (8%)
Query: 561 RLSRVLEKKAEAEKLLAELEEERPEQYEVDK--------EGITEEERYMLRKVGLRMKAF 612
R+ LEK E LL E R ++YEV K +T EER+ ++K+ + +
Sbjct: 417 RIKFKLEKARIKEALLIE----RLKRYEVPKLQGPIVQPVNLTGEERFYMKKMAQKRSNY 472
Query: 613 LLMGRRGVFDGTVENMHLHWKHRELVKIISKQRKIEAALQEARTLEVESGGILVAVERVN 672
+ +GRRGVF G + NMH+HWK E VK+I K K + A + SGG + ++
Sbjct: 473 VPVGRRGVFGGVILNMHMHWKKHETVKVICKPCKPGQVHEYANEIARLSGGTPI---QII 529
Query: 673 KGYAIILYRGKNYERPACLRPKTLLTKREAMKRSLEAQRRQSLKLHV 719
II YRGKNY +P + P L+K+ A+++S Q +S++ +
Sbjct: 530 GDDTIIFYRGKNYVQPEVMSPIDTLSKKRALEKSKYEQSLESVRRFI 576
Score = 50.4 bits (119), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 50/103 (48%), Gaps = 1/103 (0%)
Query: 173 PTLAELKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLC 232
P + + L+G+E ++ + + +G+ G+ G++ +H W+ E VK++C+
Sbjct: 447 PIVQPVNLTGEERFYMKKMAQKRSNYVPVGRRGVFGGVILNMHMHWKKHETVKVICKPCK 506
Query: 233 RLNMKRTHDSLERKTGGLVVWRSGSK-IILYRGADYKYPYFLA 274
+ + + R +GG + G II YRG +Y P ++
Sbjct: 507 PGQVHEYANEIARLSGGTPIQIIGDDTIIFYRGKNYVQPEVMS 549
Score = 45.1 bits (105), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 53/107 (49%), Gaps = 7/107 (6%)
Query: 395 VQP-KLTNDEMTTLRRLGRPLPCHFALGRNRNLQGLAAAIVKLWEKCEIAKIAVKRGAQN 453
VQP LT +E ++++ + + +GR G+ + W+K E K+ K
Sbjct: 449 VQPVNLTGEERFYMKKMAQKRSNYVPVGRRGVFGGVILNMHMHWKKHETVKVICKPCKPG 508
Query: 454 TNSEMMAQELKRLTGGT---LLSRDREFIVFYRGKDFLPPAASSAIE 497
E A E+ RL+GGT ++ D I+FYRGK+++ P S I+
Sbjct: 509 QVHEY-ANEIARLSGGTPIQIIGDDT--IIFYRGKNYVQPEVMSPID 552
>gi|297743805|emb|CBI36688.3| unnamed protein product [Vitis vinifera]
Length = 332
Score = 87.8 bits (216), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 57/167 (34%), Positives = 88/167 (52%), Gaps = 15/167 (8%)
Query: 561 RLSRVLEKKAEAEKLLAELEEERPEQYEVDK--------EGITEEERYMLRKVGLRMKAF 612
R+ LEK E LL E R ++YEV K +T EER+ ++K+ + +
Sbjct: 38 RIKFKLEKARIKEALLIE----RLKRYEVPKLQGPIVQPVNLTGEERFYMKKMAQKRSNY 93
Query: 613 LLMGRRGVFDGTVENMHLHWKHRELVKIISKQRKIEAALQEARTLEVESGGILVAVERVN 672
+ +GRRGVF G + NMH+HWK E VK+I K K + A + SGG + + +
Sbjct: 94 VPVGRRGVFGGVILNMHMHWKKHETVKVICKPCKPGQVHEYANEIARLSGGTPIQIIGDD 153
Query: 673 KGYAIILYRGKNYERPACLRPKTLLTKREAMKRSLEAQRRQSLKLHV 719
II YRGKNY +P + P L+K+ A+++S Q +S++ +
Sbjct: 154 ---TIIFYRGKNYVQPEVMSPIDTLSKKRALEKSKYEQSLESVRRFI 197
Score = 48.5 bits (114), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 50/103 (48%), Gaps = 1/103 (0%)
Query: 173 PTLAELKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLC 232
P + + L+G+E ++ + + +G+ G+ G++ +H W+ E VK++C+
Sbjct: 68 PIVQPVNLTGEERFYMKKMAQKRSNYVPVGRRGVFGGVILNMHMHWKKHETVKVICKPCK 127
Query: 233 RLNMKRTHDSLERKTGGLVVWRSGSK-IILYRGADYKYPYFLA 274
+ + + R +GG + G II YRG +Y P ++
Sbjct: 128 PGQVHEYANEIARLSGGTPIQIIGDDTIIFYRGKNYVQPEVMS 170
Score = 45.8 bits (107), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 53/107 (49%), Gaps = 7/107 (6%)
Query: 395 VQP-KLTNDEMTTLRRLGRPLPCHFALGRNRNLQGLAAAIVKLWEKCEIAKIAVKRGAQN 453
VQP LT +E ++++ + + +GR G+ + W+K E K+ K
Sbjct: 70 VQPVNLTGEERFYMKKMAQKRSNYVPVGRRGVFGGVILNMHMHWKKHETVKVICKPCKPG 129
Query: 454 TNSEMMAQELKRLTGGT---LLSRDREFIVFYRGKDFLPPAASSAIE 497
E A E+ RL+GGT ++ D I+FYRGK+++ P S I+
Sbjct: 130 QVHEY-ANEIARLSGGTPIQIIGDDT--IIFYRGKNYVQPEVMSPID 173
>gi|297739537|emb|CBI29719.3| unnamed protein product [Vitis vinifera]
Length = 331
Score = 87.8 bits (216), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 112/202 (55%), Gaps = 13/202 (6%)
Query: 567 EKKAEAEKLLAELEEERPEQYEVDKEGITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVE 626
E+ AEA L ++E + + D E +T EE + K+GL+ K ++ +GRRG++ G +
Sbjct: 19 ERLAEA---LTKIEPKESSETTHDPEILTPEEHFFFLKMGLKCKNYVPIGRRGIYQGVIL 75
Query: 627 NMHLHWKHRELVKIISKQRKIEAALQEARTLEVESGGILVAVERVNKGYAIILYRGKNYE 686
NMHLHWK + ++++ K E + A L +GGI++ + N II+YRGKNY
Sbjct: 76 NMHLHWKKHQTLQVVVKTFSPEEVKEIAVELARLTGGIVLDIHEEN---TIIMYRGKNYS 132
Query: 687 RP--ACLRPKTLLTKREAMKRSLEAQRRQSLKLHVLELTRNIEKLKLQLVKDKEANSLET 744
+P + P+ L++++A+ +S ++++ ++ L ++E L+ Q K + N E
Sbjct: 133 QPPTEIMSPRITLSRKKALDKSKYRDGLRAVRKYIPRLEGDLELLQAQ-AKMQAENKTEA 191
Query: 745 IDE----SILPLVKEEIGDMQP 762
+++ +I + + I ++QP
Sbjct: 192 VEDFQNANIDSINSQGISNLQP 213
Score = 50.8 bits (120), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 191 LGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRTHDSLERKTGGL 250
+G+ + + IG+ GI +G++ +H W+ + +++V + +K L R TGG+
Sbjct: 54 MGLKCKNYVPIGRRGIYQGVILNMHLHWKKHQTLQVVVKTFSPEEVKEIAVELARLTGGI 113
Query: 251 VV-WRSGSKIILYRGADYKYP 270
V+ + II+YRG +Y P
Sbjct: 114 VLDIHEENTIIMYRGKNYSQP 134
Score = 42.0 bits (97), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 46/93 (49%), Gaps = 2/93 (2%)
Query: 399 LTNDEMTTLRRLGRPLPCHFALGRNRNLQGLAAAIVKLWEKCEIAKIAVKRGAQNTNSEM 458
LT +E ++G + +GR QG+ + W+K + ++ VK + E+
Sbjct: 43 LTPEEHFFFLKMGLKCKNYVPIGRRGIYQGVILNMHLHWKKHQTLQVVVKTFSPEEVKEI 102
Query: 459 MAQELKRLTGGTLLSRDRE-FIVFYRGKDFLPP 490
A EL RLTGG +L E I+ YRGK++ P
Sbjct: 103 -AVELARLTGGIVLDIHEENTIIMYRGKNYSQP 134
>gi|147820521|emb|CAN67658.1| hypothetical protein VITISV_012474 [Vitis vinifera]
Length = 375
Score = 87.4 bits (215), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 57/167 (34%), Positives = 88/167 (52%), Gaps = 15/167 (8%)
Query: 561 RLSRVLEKKAEAEKLLAELEEERPEQYEVDK--------EGITEEERYMLRKVGLRMKAF 612
R+ LEK E LL E R ++YEV K +T EER+ ++K+ + +
Sbjct: 81 RIKFKLEKARIKEALLIE----RLKRYEVPKLQGPIVQPVNLTGEERFYMKKMAQKRSNY 136
Query: 613 LLMGRRGVFDGTVENMHLHWKHRELVKIISKQRKIEAALQEARTLEVESGGILVAVERVN 672
+ +GRRGVF G + NMH+HWK E VK+I K K + A + SGG + + +
Sbjct: 137 VPVGRRGVFGGVILNMHMHWKKHETVKVICKPCKPGQVHEYANEIARLSGGTPIQIIGDD 196
Query: 673 KGYAIILYRGKNYERPACLRPKTLLTKREAMKRSLEAQRRQSLKLHV 719
II YRGKNY +P + P L+K+ A+++S Q +S++ +
Sbjct: 197 ---TIIFYRGKNYVQPEXMSPIDTLSKKRALEKSKYEQSLESVRRFI 240
Score = 48.9 bits (115), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 48/99 (48%), Gaps = 1/99 (1%)
Query: 173 PTLAELKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLC 232
P + + L+G+E ++ + + +G+ G+ G++ +H W+ E VK++C+
Sbjct: 111 PIVQPVNLTGEERFYMKKMAQKRSNYVPVGRRGVFGGVILNMHMHWKKHETVKVICKPCK 170
Query: 233 RLNMKRTHDSLERKTGGLVVWRSGSK-IILYRGADYKYP 270
+ + + R +GG + G II YRG +Y P
Sbjct: 171 PGQVHEYANEIARLSGGTPIQIIGDDTIIFYRGKNYVQP 209
Score = 45.8 bits (107), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 53/107 (49%), Gaps = 7/107 (6%)
Query: 395 VQP-KLTNDEMTTLRRLGRPLPCHFALGRNRNLQGLAAAIVKLWEKCEIAKIAVKRGAQN 453
VQP LT +E ++++ + + +GR G+ + W+K E K+ K
Sbjct: 113 VQPVNLTGEERFYMKKMAQKRSNYVPVGRRGVFGGVILNMHMHWKKHETVKVICKPCKPG 172
Query: 454 TNSEMMAQELKRLTGGT---LLSRDREFIVFYRGKDFLPPAASSAIE 497
E A E+ RL+GGT ++ D I+FYRGK+++ P S I+
Sbjct: 173 QVHEY-ANEIARLSGGTPIQIIGDDT--IIFYRGKNYVQPEXMSPID 216
>gi|297831446|ref|XP_002883605.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297329445|gb|EFH59864.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 1055
Score = 87.4 bits (215), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 105/188 (55%), Gaps = 8/188 (4%)
Query: 547 ERRSAEVAIRRTNIRLSRVLEKKAEAEKLLAELEEERPEQYEVDKEGITEEERYMLRKVG 606
ER +AE I +L++ +K+ + + +LE + D E +T EE + K+G
Sbjct: 747 ERMTAEEKILN---KLTKARKKEERLMETMKKLEPSESAETTHDPEILTPEEHFYYLKMG 803
Query: 607 LRMKAFLLMGRRGVFDGTVENMHLHWKHRELVKIISKQRKIEAALQEARTLEVESGGILV 666
L+ K ++ +GRRG++ G + NMHLHWK + ++++ K + + A L +GGI++
Sbjct: 804 LKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLQVVIKTFTPDEVNEIAVELARLTGGIVL 863
Query: 667 AVERVNKGYAIILYRGKNYERPA--CLRPKTLLTKREAMKRSLEAQRRQSLKLHVLELTR 724
V++G II+YRGKNY +P + P+ L +++A+ +S ++++ ++ L +
Sbjct: 864 D---VHEGNTIIMYRGKNYVQPPTEIMSPRITLPRKKALDKSKCRDALRAVRKYIPRLEQ 920
Query: 725 NIEKLKLQ 732
++ L+ Q
Sbjct: 921 ELQLLQAQ 928
Score = 50.1 bits (118), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 191 LGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRTHDSLERKTGGL 250
+G+ + + +G+ GI +G++ +H W+ + +++V + + L R TGG+
Sbjct: 802 MGLKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLQVVIKTFTPDEVNEIAVELARLTGGI 861
Query: 251 VV-WRSGSKIILYRGADYKYP 270
V+ G+ II+YRG +Y P
Sbjct: 862 VLDVHEGNTIIMYRGKNYVQP 882
Score = 41.6 bits (96), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 48/93 (51%), Gaps = 2/93 (2%)
Query: 399 LTNDEMTTLRRLGRPLPCHFALGRNRNLQGLAAAIVKLWEKCEIAKIAVKRGAQNTNSEM 458
LT +E ++G + +GR QG+ + W+K + ++ +K + +E+
Sbjct: 791 LTPEEHFYYLKMGLKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLQVVIKTFTPDEVNEI 850
Query: 459 MAQELKRLTGGTLLS-RDREFIVFYRGKDFLPP 490
A EL RLTGG +L + I+ YRGK+++ P
Sbjct: 851 -AVELARLTGGIVLDVHEGNTIIMYRGKNYVQP 882
>gi|242076094|ref|XP_002447983.1| hypothetical protein SORBIDRAFT_06g019245 [Sorghum bicolor]
gi|241939166|gb|EES12311.1| hypothetical protein SORBIDRAFT_06g019245 [Sorghum bicolor]
Length = 88
Score = 86.7 bits (213), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 48/92 (52%), Positives = 63/92 (68%), Gaps = 12/92 (13%)
Query: 977 YPLAIVNVKGRAKGTSVQEVVAKLEEATGAVLVSQEPSKVILYRGWGAE--DESSPRGRQ 1034
+PLAIVN+K RA GT +Q+++++LEEATG+VLVS+E +KVILYRGWGAE ESS
Sbjct: 1 HPLAIVNIKNRADGTPIQQLISELEEATGSVLVSRETNKVILYRGWGAEVAQESSKESSA 60
Query: 1035 NSRAKPSIVRDVRPWPAVSRELLAAIKLECGL 1066
+ K +S +LL AI+LECGL
Sbjct: 61 DEGEK----------EVISPQLLEAIRLECGL 82
>gi|224095670|ref|XP_002310431.1| predicted protein [Populus trichocarpa]
gi|222853334|gb|EEE90881.1| predicted protein [Populus trichocarpa]
Length = 266
Score = 86.7 bits (213), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 89/161 (55%), Gaps = 4/161 (2%)
Query: 557 RTNIRLSRVLEKKAEAEKLLAELEEERPEQYEVDKEGITEEERYMLRKVGLRMKAFLLMG 616
R +L R K+A+ + L E + + EV +T EER+ ++K+ + ++ +G
Sbjct: 76 RIKTKLERARIKEAKLVERLKRYEVPKMQGPEVKPHELTGEERFFMKKMAQKKSNYVPIG 135
Query: 617 RRGVFDGTVENMHLHWKHRELVKIISKQRKIEAALQE-ARTLEVESGGILVAVERVNKGY 675
RRGVF G + NMH+HWK E VK+I +QE A+ + SGGI + + +
Sbjct: 136 RRGVFGGVILNMHMHWKKHETVKVICNSSCKPGQVQEFAQEIARLSGGIPIQIIGDD--- 192
Query: 676 AIILYRGKNYERPACLRPKTLLTKREAMKRSLEAQRRQSLK 716
+I YRGKNY +P + P L+K++A+++S Q ++++
Sbjct: 193 TVIFYRGKNYVQPKVMSPVDTLSKKKALEKSKYEQSLETVR 233
Score = 48.1 bits (113), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 52/104 (50%), Gaps = 2/104 (1%)
Query: 173 PTLAELKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLC 232
P + +L+G+E ++ + + IG+ G+ G++ +H W+ E VK++C C
Sbjct: 106 PEVKPHELTGEERFFMKKMAQKKSNYVPIGRRGVFGGVILNMHMHWKKHETVKVICNSSC 165
Query: 233 RL-NMKRTHDSLERKTGGLVVWRSG-SKIILYRGADYKYPYFLA 274
+ ++ + R +GG+ + G +I YRG +Y P ++
Sbjct: 166 KPGQVQEFAQEIARLSGGIPIQIIGDDTVIFYRGKNYVQPKVMS 209
Score = 46.6 bits (109), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 54/107 (50%), Gaps = 6/107 (5%)
Query: 395 VQP-KLTNDEMTTLRRLGRPLPCHFALGRNRNLQGLAAAIVKLWEKCEIAKIAVKRGAQN 453
V+P +LT +E ++++ + + +GR G+ + W+K E K+ +
Sbjct: 108 VKPHELTGEERFFMKKMAQKKSNYVPIGRRGVFGGVILNMHMHWKKHETVKVICNSSCKP 167
Query: 454 TNSEMMAQELKRLTGGT---LLSRDREFIVFYRGKDFLPPAASSAIE 497
+ AQE+ RL+GG ++ D ++FYRGK+++ P S ++
Sbjct: 168 GQVQEFAQEIARLSGGIPIQIIGDDT--VIFYRGKNYVQPKVMSPVD 212
>gi|9279724|dbj|BAB01314.1| unnamed protein product [Arabidopsis thaliana]
Length = 1115
Score = 85.9 bits (211), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 103/176 (58%), Gaps = 8/176 (4%)
Query: 562 LSRVLEKKAEAEKLLAELEEERP-EQYEV--DKEGITEEERYMLRKVGLRMKAFLLMGRR 618
L+++ + + + E+L+ +++ P E E D E +T EE + K+GL+ K ++ +GRR
Sbjct: 813 LNKLRKARKKEERLMETMKKLEPSESAETTHDPEILTPEEHFYYLKMGLKCKNYVPVGRR 872
Query: 619 GVFDGTVENMHLHWKHRELVKIISKQRKIEAALQEARTLEVESGGILVAVERVNKGYAII 678
G++ G + NMHLHWK + ++++ K + + A L +GGI++ V++G II
Sbjct: 873 GIYQGVILNMHLHWKKHQTLQVVIKTFTPDEVKEIAVELARLTGGIVLD---VHEGNTII 929
Query: 679 LYRGKNYERP--ACLRPKTLLTKREAMKRSLEAQRRQSLKLHVLELTRNIEKLKLQ 732
+YRGKNY +P + P+ L +++A+ +S ++++ ++ L + ++ L+ Q
Sbjct: 930 MYRGKNYVQPPTEIMSPRITLPRKKALDKSKCRDALRAVRKYIPRLEQELQLLQAQ 985
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 191 LGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRTHDSLERKTGGL 250
+G+ + + +G+ GI +G++ +H W+ + +++V + +K L R TGG+
Sbjct: 859 MGLKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLQVVIKTFTPDEVKEIAVELARLTGGI 918
Query: 251 VV-WRSGSKIILYRGADYKYP 270
V+ G+ II+YRG +Y P
Sbjct: 919 VLDVHEGNTIIMYRGKNYVQP 939
Score = 41.2 bits (95), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 47/93 (50%), Gaps = 2/93 (2%)
Query: 399 LTNDEMTTLRRLGRPLPCHFALGRNRNLQGLAAAIVKLWEKCEIAKIAVKRGAQNTNSEM 458
LT +E ++G + +GR QG+ + W+K + ++ +K + E+
Sbjct: 848 LTPEEHFYYLKMGLKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLQVVIKTFTPDEVKEI 907
Query: 459 MAQELKRLTGGTLLS-RDREFIVFYRGKDFLPP 490
A EL RLTGG +L + I+ YRGK+++ P
Sbjct: 908 -AVELARLTGGIVLDVHEGNTIIMYRGKNYVQP 939
>gi|388504790|gb|AFK40461.1| unknown [Medicago truncatula]
Length = 190
Score = 85.1 bits (209), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/85 (44%), Positives = 57/85 (67%)
Query: 180 LSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRT 239
L +EL RLRT+GI L++K+ I K+G+T ++ IH +W E+VK+ NM
Sbjct: 106 LEKEELSRLRTMGIHLKQKISIPKSGLTRSVLQRIHHQWNTNELVKLKFHQQLVQNMNLA 165
Query: 240 HDSLERKTGGLVVWRSGSKIILYRG 264
H+ ++R+TGGLV+WRSGS + +YRG
Sbjct: 166 HNIVQRRTGGLVIWRSGSVMWVYRG 190
>gi|125590852|gb|EAZ31202.1| hypothetical protein OsJ_15301 [Oryza sativa Japonica Group]
Length = 484
Score = 84.7 bits (208), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 84/144 (58%), Gaps = 7/144 (4%)
Query: 560 IRLSRVLEKKAEAEKLLAELEEERPEQYEVDKEGITEEERYMLRKVGLRMKAFLLMGRRG 619
++L+R E++ A L ++E + P + D E +T EE + K+G + K ++ +GRRG
Sbjct: 147 LKLARNKEERLVA--ALTKIEPDDPSEPTHDPEVLTPEEHFYFLKMGQKSKNYVPVGRRG 204
Query: 620 VFDGTVENMHLHWKHRELVKIISKQRKIEAALQEARTLEVESGGILVAVERVNKGYAIIL 679
++ G + NMHLHWK + +++I K + + A L SGGI++ ++ +G II+
Sbjct: 205 IYQGVILNMHLHWKKHQTLQVIVKTFTPDEVKEIASELARLSGGIVLDIQ---EGNTIIM 261
Query: 680 YRGKNYERPA--CLRPKTLLTKRE 701
YRGKNY +P + PK L +++
Sbjct: 262 YRGKNYAQPPPEIMSPKVTLPRKK 285
Score = 49.7 bits (117), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 62/122 (50%), Gaps = 4/122 (3%)
Query: 150 NKEVGRQKWLAKNSKMNEKEKEVPTLAELKLSGKELRRLRTLGIGLRKKLKIGKAGITEG 209
NKE ++ +A +K+ + PT L+ +E +G + + +G+ GI +G
Sbjct: 152 NKE---ERLVAALTKIEPDDPSEPTHDPEVLTPEEHFYFLKMGQKSKNYVPVGRRGIYQG 208
Query: 210 IVNGIHERWRHAEVVKIVCEDLCRLNMKRTHDSLERKTGGLVV-WRSGSKIILYRGADYK 268
++ +H W+ + ++++ + +K L R +GG+V+ + G+ II+YRG +Y
Sbjct: 209 VILNMHLHWKKHQTLQVIVKTFTPDEVKEIASELARLSGGIVLDIQEGNTIIMYRGKNYA 268
Query: 269 YP 270
P
Sbjct: 269 QP 270
Score = 42.4 bits (98), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 57/229 (24%), Positives = 92/229 (40%), Gaps = 40/229 (17%)
Query: 399 LTNDEMTTLRRLGRPLPCHFALGRNRNLQGLAAAIVKLWEKCEIAKIAVKRGAQNTNSEM 458
LT +E ++G+ + +GR QG+ + W+K + ++ VK + E+
Sbjct: 179 LTPEEHFYFLKMGQKSKNYVPVGRRGIYQGVILNMHLHWKKHQTLQVIVKTFTPDEVKEI 238
Query: 459 MAQELKRLTGGTLLS-RDREFIVFYRGKDFLPP----AASSAIEERRKHEF-------ST 506
A EL RL+GG +L ++ I+ YRGK++ P + R+K + +T
Sbjct: 239 -ASELARLSGGIVLDIQEGNTIIMYRGKNYAQPPPEIMSPKVTLPRKKWKVLQHWINQNT 297
Query: 507 SNDSKE--------EPELGNRH-------DNSGDNTQDEFGCTNDQKSTMHSEQKERRSA 551
N S+ E EL + H D G N ++ C +D S + KE S
Sbjct: 298 ENASRALRRYIPRLEQELVDLHAQMKLARDYKGQNAAEDITCISD--SVNSTSAKEYSSC 355
Query: 552 EVAIRRTNIRLSRVLEKKAEAEKLLAELEEERPEQYEVDKEGITEEERY 600
V R + LS +E E E YEV + +E Y
Sbjct: 356 SVRKRSVSDLLSESIEGSGRLED----------ENYEVSADSASESITY 394
>gi|357439925|ref|XP_003590240.1| CRM domain-containing protein, putative [Medicago truncatula]
gi|355479288|gb|AES60491.1| CRM domain-containing protein, putative [Medicago truncatula]
Length = 472
Score = 83.6 bits (205), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 84/147 (57%), Gaps = 8/147 (5%)
Query: 562 LSRVLEKKAEAEKLLAELEEERP-EQYEV--DKEGITEEERYMLRKVGLRMKAFLLMGRR 618
L ++L+ + + E+L L++ P E E D E +T EE + K+GL+ K ++ +GRR
Sbjct: 123 LYKLLKARKKEERLREALKKIEPTESSETIHDPEILTPEEHFFFLKMGLKSKNYVPVGRR 182
Query: 619 GVFDGTVENMHLHWKHRELVKIISKQRKIEAALQEARTLEVESGGILVAVERVNKGYAII 678
G++ G + NMHLHWK + ++++ K E + A L +GGI++ + + II
Sbjct: 183 GIYQGVILNMHLHWKKHQTLQVVVKTFSAEEVKEIATELARLTGGIVLGIHEED---TII 239
Query: 679 LYRGKNYERPA--CLRPKTLLTKREAM 703
+YRGKNY +P + P+ L +++ +
Sbjct: 240 MYRGKNYSQPPTEIMSPRVTLPRKKVL 266
Score = 50.4 bits (119), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 45/83 (54%), Gaps = 3/83 (3%)
Query: 191 LGIGLRKK--LKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRTHDSLERKTG 248
L +GL+ K + +G+ GI +G++ +H W+ + +++V + +K L R TG
Sbjct: 167 LKMGLKSKNYVPVGRRGIYQGVILNMHLHWKKHQTLQVVVKTFSAEEVKEIATELARLTG 226
Query: 249 GLVV-WRSGSKIILYRGADYKYP 270
G+V+ II+YRG +Y P
Sbjct: 227 GIVLGIHEEDTIIMYRGKNYSQP 249
Score = 42.4 bits (98), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 47/93 (50%), Gaps = 2/93 (2%)
Query: 399 LTNDEMTTLRRLGRPLPCHFALGRNRNLQGLAAAIVKLWEKCEIAKIAVKRGAQNTNSEM 458
LT +E ++G + +GR QG+ + W+K + ++ VK + E+
Sbjct: 158 LTPEEHFFFLKMGLKSKNYVPVGRRGIYQGVILNMHLHWKKHQTLQVVVKTFSAEEVKEI 217
Query: 459 MAQELKRLTGGTLLS-RDREFIVFYRGKDFLPP 490
A EL RLTGG +L + + I+ YRGK++ P
Sbjct: 218 -ATELARLTGGIVLGIHEEDTIIMYRGKNYSQP 249
>gi|79417439|ref|NP_189171.2| uncharacterized CRM domain-containing protein [Arabidopsis
thaliana]
gi|75116513|sp|Q67XL4.1|Y3544_ARATH RecName: Full=Uncharacterized CRM domain-containing protein
At3g25440, chloroplastic; Flags: Precursor
gi|51971805|dbj|BAD44567.1| unknown protein [Arabidopsis thaliana]
gi|332643490|gb|AEE77011.1| uncharacterized CRM domain-containing protein [Arabidopsis
thaliana]
Length = 444
Score = 83.2 bits (204), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 103/176 (58%), Gaps = 8/176 (4%)
Query: 562 LSRVLEKKAEAEKLLAELEEERP-EQYEV--DKEGITEEERYMLRKVGLRMKAFLLMGRR 618
L+++ + + + E+L+ +++ P E E D E +T EE + K+GL+ K ++ +GRR
Sbjct: 142 LNKLRKARKKEERLMETMKKLEPSESAETTHDPEILTPEEHFYYLKMGLKCKNYVPVGRR 201
Query: 619 GVFDGTVENMHLHWKHRELVKIISKQRKIEAALQEARTLEVESGGILVAVERVNKGYAII 678
G++ G + NMHLHWK + ++++ K + + A L +GGI++ V++G II
Sbjct: 202 GIYQGVILNMHLHWKKHQTLQVVIKTFTPDEVKEIAVELARLTGGIVLD---VHEGNTII 258
Query: 679 LYRGKNYERP--ACLRPKTLLTKREAMKRSLEAQRRQSLKLHVLELTRNIEKLKLQ 732
+YRGKNY +P + P+ L +++A+ +S ++++ ++ L + ++ L+ Q
Sbjct: 259 MYRGKNYVQPPTEIMSPRITLPRKKALDKSKCRDALRAVRKYIPRLEQELQLLQAQ 314
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 191 LGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRTHDSLERKTGGL 250
+G+ + + +G+ GI +G++ +H W+ + +++V + +K L R TGG+
Sbjct: 188 MGLKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLQVVIKTFTPDEVKEIAVELARLTGGI 247
Query: 251 VV-WRSGSKIILYRGADYKYP 270
V+ G+ II+YRG +Y P
Sbjct: 248 VLDVHEGNTIIMYRGKNYVQP 268
Score = 40.8 bits (94), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 47/93 (50%), Gaps = 2/93 (2%)
Query: 399 LTNDEMTTLRRLGRPLPCHFALGRNRNLQGLAAAIVKLWEKCEIAKIAVKRGAQNTNSEM 458
LT +E ++G + +GR QG+ + W+K + ++ +K + E+
Sbjct: 177 LTPEEHFYYLKMGLKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLQVVIKTFTPDEVKEI 236
Query: 459 MAQELKRLTGGTLLS-RDREFIVFYRGKDFLPP 490
A EL RLTGG +L + I+ YRGK+++ P
Sbjct: 237 -AVELARLTGGIVLDVHEGNTIIMYRGKNYVQP 268
>gi|145332683|ref|NP_001078207.1| uncharacterized CRM domain-containing protein [Arabidopsis
thaliana]
gi|332643491|gb|AEE77012.1| uncharacterized CRM domain-containing protein [Arabidopsis
thaliana]
Length = 380
Score = 82.4 bits (202), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 86/145 (59%), Gaps = 5/145 (3%)
Query: 590 DKEGITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVENMHLHWKHRELVKIISKQRKIEA 649
D E +T EE + K+GL+ K ++ +GRRG++ G + NMHLHWK + ++++ K +
Sbjct: 109 DPEILTPEEHFYYLKMGLKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLQVVIKTFTPDE 168
Query: 650 ALQEARTLEVESGGILVAVERVNKGYAIILYRGKNYERP--ACLRPKTLLTKREAMKRSL 707
+ A L +GGI++ V++G II+YRGKNY +P + P+ L +++A+ +S
Sbjct: 169 VKEIAVELARLTGGIVLD---VHEGNTIIMYRGKNYVQPPTEIMSPRITLPRKKALDKSK 225
Query: 708 EAQRRQSLKLHVLELTRNIEKLKLQ 732
++++ ++ L + ++ L+ Q
Sbjct: 226 CRDALRAVRKYIPRLEQELQLLQAQ 250
Score = 51.2 bits (121), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 191 LGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRTHDSLERKTGGL 250
+G+ + + +G+ GI +G++ +H W+ + +++V + +K L R TGG+
Sbjct: 124 MGLKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLQVVIKTFTPDEVKEIAVELARLTGGI 183
Query: 251 VV-WRSGSKIILYRGADYKYP 270
V+ G+ II+YRG +Y P
Sbjct: 184 VLDVHEGNTIIMYRGKNYVQP 204
Score = 41.2 bits (95), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 47/93 (50%), Gaps = 2/93 (2%)
Query: 399 LTNDEMTTLRRLGRPLPCHFALGRNRNLQGLAAAIVKLWEKCEIAKIAVKRGAQNTNSEM 458
LT +E ++G + +GR QG+ + W+K + ++ +K + E+
Sbjct: 113 LTPEEHFYYLKMGLKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLQVVIKTFTPDEVKEI 172
Query: 459 MAQELKRLTGGTLLS-RDREFIVFYRGKDFLPP 490
A EL RLTGG +L + I+ YRGK+++ P
Sbjct: 173 -AVELARLTGGIVLDVHEGNTIIMYRGKNYVQP 204
>gi|297836246|ref|XP_002886005.1| hypothetical protein ARALYDRAFT_480467 [Arabidopsis lyrata subsp.
lyrata]
gi|297331845|gb|EFH62264.1| hypothetical protein ARALYDRAFT_480467 [Arabidopsis lyrata subsp.
lyrata]
Length = 700
Score = 76.6 bits (187), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 56/90 (62%)
Query: 180 LSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRT 239
L+ +E+R L T + ++L +G+ G+T ++N IH+ W+ V KI C+ +C ++M +
Sbjct: 243 LTKEEIRELVTSCLKTTRQLNMGRDGLTHNMLNNIHDLWKRRRVCKIKCKGVCTVDMDKV 302
Query: 240 HDSLERKTGGLVVWRSGSKIILYRGADYKY 269
+ LE K GG V++R G + L+RG +Y +
Sbjct: 303 CEQLEEKIGGKVIYRRGGVLFLFRGRNYNH 332
Score = 44.7 bits (104), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 54/108 (50%), Gaps = 5/108 (4%)
Query: 380 TVPGYRRPFRLLPYGVQPKLTNDEMTTLRRLGRPLPCHFALGRNRNLQGLAAAIVKLWEK 439
P Y R + +P G LT E T +RR GR L LG+N L + + +E
Sbjct: 346 VAPVYPRLIQQVPEG----LTLQEATEMRRKGRELMPICKLGKNGVYCDLVKNVKEAFEV 401
Query: 440 CEIAKIAVKRGAQNTNSEMMAQELKRLTGGTLLSRDREFIVFYRGKDF 487
CE+ +I + G + ++ + +LK L L+S + E I+ +RG+++
Sbjct: 402 CELVRIDCQ-GMKGSDFRKIGAKLKDLVPCVLISFENEQILIWRGREW 448
Score = 43.1 bits (100), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 46/98 (46%), Gaps = 4/98 (4%)
Query: 588 EVDKEGITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVENMHLHWKHRELVKIISKQRKI 647
E+ E +T+EE L L+ L MGR G+ + N+H WK R + KI K
Sbjct: 237 EILGEPLTKEEIRELVTSCLKTTRQLNMGRDGLTHNMLNNIHDLWKRRRVCKIKCKGVCT 296
Query: 648 EAALQEARTLEVESGGILVAVERVNKGYAIILYRGKNY 685
+ LE + GG ++ +G + L+RG+NY
Sbjct: 297 VDMDKVCEQLEEKIGGKVI----YRRGGVLFLFRGRNY 330
Score = 41.6 bits (96), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 49/86 (56%), Gaps = 6/86 (6%)
Query: 941 LLRKQALRMKKR-----PVLAVGRSNIVTGVAKAIKAHFEKYPLAIVNVKGRAKGTSVQE 995
L ++A M+++ P+ +G++ + + K +K FE L ++ +G KG+ ++
Sbjct: 361 LTLQEATEMRRKGRELMPICKLGKNGVYCDLVKNVKEAFEVCELVRIDCQG-MKGSDFRK 419
Query: 996 VVAKLEEATGAVLVSQEPSKVILYRG 1021
+ AKL++ VL+S E +++++RG
Sbjct: 420 IGAKLKDLVPCVLISFENEQILIWRG 445
>gi|356513969|ref|XP_003525680.1| PREDICTED: uncharacterized protein LOC100780131 [Glycine max]
Length = 653
Score = 75.1 bits (183), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/140 (36%), Positives = 81/140 (57%), Gaps = 3/140 (2%)
Query: 590 DKEGITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVENMHLHWKHRELVKIISKQRKIEA 649
D E +T E+ +K+G R K ++ +G RGVF G V+NMHLHWK E V++ E
Sbjct: 147 DPELLTPEQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEK 206
Query: 650 ALQEARTLEVESGGILVAVERVNKGYAIILYRGKNYERPACLRPKTLLTKREAMKRSLEA 709
+ A L SGGI++ V V II++RG+NY +P L P LTKR+A+ ++
Sbjct: 207 IKEMASMLARLSGGIVINVHNVK---TIIMFRGRNYRQPKNLIPINTLTKRKALFKARFE 263
Query: 710 QRRQSLKLHVLELTRNIEKL 729
Q +S KL++ ++ + + ++
Sbjct: 264 QALESQKLNIKKIEQQLRRM 283
Score = 41.6 bits (96), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 213 GIHERWRHAEVVKIVCEDLCRLNMKRTHDSLERKTGGLVVWRSGSK-IILYRGADYKYP 270
+H W+ E V++ C++ + +K L R +GG+V+ K II++RG +Y+ P
Sbjct: 184 NMHLHWKFHETVQVCCDNFPKEKIKEMASMLARLSGGIVINVHNVKTIIMFRGRNYRQP 242
>gi|18399222|ref|NP_565462.1| CRS2-associated factor 1 [Arabidopsis thaliana]
gi|75266026|sp|Q9SL79.2|CAF1P_ARATH RecName: Full=CRS2-associated factor 1, chloroplastic; AltName:
Full=Chloroplastic group IIA intron splicing facilitator
CRS2-associated factor 1; Flags: Precursor
gi|15028051|gb|AAK76556.1| unknown protein [Arabidopsis thaliana]
gi|20197570|gb|AAD24394.2| expressed protein [Arabidopsis thaliana]
gi|28393847|gb|AAO42331.1| unknown protein [Arabidopsis thaliana]
gi|330251862|gb|AEC06956.1| CRS2-associated factor 1 [Arabidopsis thaliana]
Length = 701
Score = 75.1 bits (183), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 55/90 (61%)
Query: 180 LSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRT 239
L+ +E+R L T + ++L +G+ G+T ++N IH+ W+ V KI C+ +C ++M
Sbjct: 243 LTKEEVRELVTSCLKTTRQLNMGRDGLTHNMLNNIHDLWKRRRVCKIKCKGVCTVDMDNV 302
Query: 240 HDSLERKTGGLVVWRSGSKIILYRGADYKY 269
+ LE K GG V++R G + L+RG +Y +
Sbjct: 303 CEQLEEKIGGKVIYRRGGVLFLFRGRNYNH 332
Score = 45.8 bits (107), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 55/112 (49%), Gaps = 5/112 (4%)
Query: 376 LLPATVPGYRRPFRLLPYGVQPKLTNDEMTTLRRLGRPLPCHFALGRNRNLQGLAAAIVK 435
L P Y R + +P G LT E T +RR GR L LG+N L + +
Sbjct: 342 LWKPVAPVYPRLIQQVPEG----LTRQEATNMRRKGRELMPICKLGKNGVYCDLVKNVKE 397
Query: 436 LWEKCEIAKIAVKRGAQNTNSEMMAQELKRLTGGTLLSRDREFIVFYRGKDF 487
+E CE+ +I + G + ++ + +LK L L+S + E I+ +RG+++
Sbjct: 398 AFEVCELVRIDCQ-GMKGSDFRKIGAKLKDLVPCVLVSFENEQILIWRGREW 448
Score = 45.1 bits (105), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 50/86 (58%), Gaps = 6/86 (6%)
Query: 941 LLRKQALRMKKR-----PVLAVGRSNIVTGVAKAIKAHFEKYPLAIVNVKGRAKGTSVQE 995
L R++A M+++ P+ +G++ + + K +K FE L ++ +G KG+ ++
Sbjct: 361 LTRQEATNMRRKGRELMPICKLGKNGVYCDLVKNVKEAFEVCELVRIDCQG-MKGSDFRK 419
Query: 996 VVAKLEEATGAVLVSQEPSKVILYRG 1021
+ AKL++ VLVS E +++++RG
Sbjct: 420 IGAKLKDLVPCVLVSFENEQILIWRG 445
Score = 42.7 bits (99), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 45/98 (45%), Gaps = 4/98 (4%)
Query: 588 EVDKEGITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVENMHLHWKHRELVKIISKQRKI 647
E+ E +T+EE L L+ L MGR G+ + N+H WK R + KI K
Sbjct: 237 EILGEPLTKEEVRELVTSCLKTTRQLNMGRDGLTHNMLNNIHDLWKRRRVCKIKCKGVCT 296
Query: 648 EAALQEARTLEVESGGILVAVERVNKGYAIILYRGKNY 685
LE + GG ++ +G + L+RG+NY
Sbjct: 297 VDMDNVCEQLEEKIGGKVI----YRRGGVLFLFRGRNY 330
>gi|356573355|ref|XP_003554827.1| PREDICTED: uncharacterized protein LOC100782246 [Glycine max]
Length = 653
Score = 74.7 bits (182), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 51/140 (36%), Positives = 81/140 (57%), Gaps = 3/140 (2%)
Query: 590 DKEGITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVENMHLHWKHRELVKIISKQRKIEA 649
D E +T E+ +K+G R K ++ +G RGVF G V+NMHLHWK E V++ E
Sbjct: 147 DPELLTPEQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEK 206
Query: 650 ALQEARTLEVESGGILVAVERVNKGYAIILYRGKNYERPACLRPKTLLTKREAMKRSLEA 709
+ A L SGGI++ V V II++RG+NY +P L P LTKR+A+ ++
Sbjct: 207 IKEMASMLARLSGGIVINVHNVK---TIIMFRGRNYRQPKNLIPINTLTKRKALFKARFE 263
Query: 710 QRRQSLKLHVLELTRNIEKL 729
Q +S KL++ ++ + + ++
Sbjct: 264 QALESQKLNIKKIEQQLRRM 283
Score = 41.6 bits (96), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 214 IHERWRHAEVVKIVCEDLCRLNMKRTHDSLERKTGGLVVWRSGSK-IILYRGADYKYP 270
+H W+ E V++ C++ + +K L R +GG+V+ K II++RG +Y+ P
Sbjct: 185 MHLHWKFHETVQVCCDNFPKEKIKEMASMLARLSGGIVINVHNVKTIIMFRGRNYRQP 242
>gi|356560779|ref|XP_003548665.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized CRM
domain-containing protein At3g25440, chloroplastic-like
[Glycine max]
Length = 273
Score = 74.3 bits (181), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 83/150 (55%), Gaps = 12/150 (8%)
Query: 562 LSRVLEKKAEAEKLLAELEEERPEQYEVDKEGITEEERYMLRKVGLRMKAFLLMGRRGVF 621
L++ +KK + L ++E + + D E + EE + K+GL+ K + +GRRG++
Sbjct: 25 LTKAQKKKKRLCEALKKIEPAKSSETTHDPEILXPEEHFFFLKMGLKRKNNVPVGRRGIY 84
Query: 622 DGTVENMHLHWKHRELVKII---SKQRKIEAALQEARTLEVESGGILVAVERVNKGYAII 678
G + +MHLH K + +K++ S E A + AR SGGI++ + N II
Sbjct: 85 QGVILSMHLHXKKHQTLKVVKTFSAAEVKEIAAELARL----SGGIVLDIHEDN---TII 137
Query: 679 LYRGKNYERP--ACLRPKTLLTKREAMKRS 706
+YRGKNY +P + P+ L++++A+ +S
Sbjct: 138 MYRGKNYSQPPTQIMSPRVSLSRKKALDKS 167
Score = 43.9 bits (102), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 46/83 (55%), Gaps = 4/83 (4%)
Query: 191 LGIGLRKK--LKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRTHDSLERKTG 248
L +GL++K + +G+ GI +G++ +H + + +K+V + +K L R +G
Sbjct: 66 LKMGLKRKNNVPVGRRGIYQGVILSMHLHXKKHQTLKVV-KTFSAAEVKEIAAELARLSG 124
Query: 249 GLVV-WRSGSKIILYRGADYKYP 270
G+V+ + II+YRG +Y P
Sbjct: 125 GIVLDIHEDNTIIMYRGKNYSQP 147
>gi|359488800|ref|XP_002272412.2| PREDICTED: uncharacterized protein LOC100254349 [Vitis vinifera]
Length = 666
Score = 73.6 bits (179), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 51/140 (36%), Positives = 80/140 (57%), Gaps = 3/140 (2%)
Query: 590 DKEGITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVENMHLHWKHRELVKIISKQRKIEA 649
D E +T E+ +K+G R K ++ +G RGVF G V+NMHLHWK E V++ E
Sbjct: 130 DPELLTAEQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEK 189
Query: 650 ALQEARTLEVESGGILVAVERVNKGYAIILYRGKNYERPACLRPKTLLTKREAMKRSLEA 709
+ A L SGGI++ V V II++RG+NY +P L P LTKR+A+ ++
Sbjct: 190 IKEMATMLARLSGGIVINVHDVK---TIIMFRGRNYRQPKNLIPINTLTKRKALFKARFE 246
Query: 710 QRRQSLKLHVLELTRNIEKL 729
Q S KL++ ++ + + ++
Sbjct: 247 QALDSQKLNIKKIEQQLRRM 266
Score = 41.2 bits (95), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 51/92 (55%), Gaps = 1/92 (1%)
Query: 180 LSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRT 239
L+ ++L+ + +G + + +G G+ G+V +H W+ E V++ C++ + +K
Sbjct: 134 LTAEQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEM 193
Query: 240 HDSLERKTGGLVVWRSGSK-IILYRGADYKYP 270
L R +GG+V+ K II++RG +Y+ P
Sbjct: 194 ATMLARLSGGIVINVHDVKTIIMFRGRNYRQP 225
>gi|255560940|ref|XP_002521483.1| conserved hypothetical protein [Ricinus communis]
gi|223539382|gb|EEF40973.1| conserved hypothetical protein [Ricinus communis]
Length = 745
Score = 72.8 bits (177), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/140 (35%), Positives = 80/140 (57%), Gaps = 3/140 (2%)
Query: 590 DKEGITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVENMHLHWKHRELVKIISKQRKIEA 649
D E T E+ +K+G R + ++ +G RGVF G V+NMHLHWK E V++ E
Sbjct: 148 DPELFTSEQLQAYKKIGFRNRNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEK 207
Query: 650 ALQEARTLEVESGGILVAVERVNKGYAIILYRGKNYERPACLRPKTLLTKREAMKRSLEA 709
+ A L SGGI++ + V II++RG+NY +P L P LTKR+A+ ++
Sbjct: 208 IKEMATMLARLSGGIVINIHNVK---TIIMFRGRNYRQPKNLIPINTLTKRKALFKARFE 264
Query: 710 QRRQSLKLHVLELTRNIEKL 729
Q +S KL++ ++ + + ++
Sbjct: 265 QALESQKLNIKKIEQQLRRM 284
Score = 40.8 bits (94), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 50/92 (54%), Gaps = 1/92 (1%)
Query: 180 LSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRT 239
+ ++L+ + +G R + +G G+ G+V +H W+ E V++ C++ + +K
Sbjct: 152 FTSEQLQAYKKIGFRNRNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEM 211
Query: 240 HDSLERKTGGLVVWRSGSK-IILYRGADYKYP 270
L R +GG+V+ K II++RG +Y+ P
Sbjct: 212 ATMLARLSGGIVINIHNVKTIIMFRGRNYRQP 243
>gi|225453847|ref|XP_002272563.1| PREDICTED: CRS2-associated factor 1, mitochondrial [Vitis vinifera]
gi|296089125|emb|CBI38828.3| unnamed protein product [Vitis vinifera]
Length = 418
Score = 72.4 bits (176), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 63/108 (58%), Gaps = 6/108 (5%)
Query: 161 KNSKMNEKEKEVP-TLAELKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWR 219
K +M EK P T AE K+ ++ +R RT ++++ +G+ G+T ++N IH W+
Sbjct: 151 KRRRMREKTLGEPLTAAERKILVEKCQRHRT-----KRQINLGRDGLTHNMLNDIHNHWK 205
Query: 220 HAEVVKIVCEDLCRLNMKRTHDSLERKTGGLVVWRSGSKIILYRGADY 267
HAE V+I C + ++MK LE KT G V+ R G ++LYRG +Y
Sbjct: 206 HAEAVRIKCMGVPTVDMKNVCTQLEDKTSGKVIHRQGGLLVLYRGRNY 253
Score = 40.0 bits (92), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 4/79 (5%)
Query: 608 RMKAFLLMGRRGVFDGTVENMHLHWKHRELVKIISKQRKIEAALQEARTLEVESGGILVA 667
R K + +GR G+ + ++H HWKH E V+I LE ++ G ++
Sbjct: 180 RTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCMGVPTVDMKNVCTQLEDKTSGKVIH 239
Query: 668 VERVNKGYAIILYRGKNYE 686
+G ++LYRG+NY
Sbjct: 240 ----RQGGLLVLYRGRNYH 254
>gi|242086871|ref|XP_002439268.1| hypothetical protein SORBIDRAFT_09g003490 [Sorghum bicolor]
gi|241944553|gb|EES17698.1| hypothetical protein SORBIDRAFT_09g003490 [Sorghum bicolor]
Length = 652
Score = 72.4 bits (176), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 67/213 (31%), Positives = 109/213 (51%), Gaps = 29/213 (13%)
Query: 540 TMHSEQKERRSAEVAIRRTNIRLSRVLEKK--AEAEKLLAELEE---------ERPEQYE 588
+M S+ ++R + E + +R + L KK E EKL+ L ++ ++YE
Sbjct: 61 SMRSKVEKRMARETGRTQRELRRAVKLRKKLMTEDEKLIYNLRRAKKKVALLLQKLKKYE 120
Query: 589 V--------DKEGITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVENMHLHWKHRELVKI 640
+ D E +T E+ +K+G R + ++ +G RGVF G V+NMH+HWK E V++
Sbjct: 121 LPDLPAPRHDPELLTAEQLQAYKKIGFRNRNYVPVGVRGVFGGVVQNMHMHWKFHETVQV 180
Query: 641 ISKQRKIEAALQEARTLEVESGGILVAVERVNKGYAIILYRGKNYERPACLRPKTLLTKR 700
E + A L SGGI++ + II++RG+NY +P L P LTKR
Sbjct: 181 CCDNFPKEKIKEMAAMLTRLSGGIVINIHNTK---TIIMFRGRNYRQPKNLIPFNTLTKR 237
Query: 701 EAMKRSLEAQRRQSLKLHVLELTRNIEKLKLQL 733
+A+ ++ Q +S KL NI+K++ QL
Sbjct: 238 KALFKARFEQALESQKL-------NIKKIETQL 263
Score = 41.6 bits (96), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 60/112 (53%), Gaps = 6/112 (5%)
Query: 168 KEKEVPTLAELK-----LSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAE 222
K+ E+P L + L+ ++L+ + +G R + +G G+ G+V +H W+ E
Sbjct: 117 KKYELPDLPAPRHDPELLTAEQLQAYKKIGFRNRNYVPVGVRGVFGGVVQNMHMHWKFHE 176
Query: 223 VVKIVCEDLCRLNMKRTHDSLERKTGGLVVWRSGSK-IILYRGADYKYPYFL 273
V++ C++ + +K L R +GG+V+ +K II++RG +Y+ P L
Sbjct: 177 TVQVCCDNFPKEKIKEMAAMLTRLSGGIVINIHNTKTIIMFRGRNYRQPKNL 228
>gi|413950005|gb|AFW82654.1| hypothetical protein ZEAMMB73_283519 [Zea mays]
Length = 645
Score = 72.0 bits (175), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 67/213 (31%), Positives = 109/213 (51%), Gaps = 29/213 (13%)
Query: 540 TMHSEQKERRSAEVAIRRTNIRLSRVLEKK--AEAEKLLAELEE---------ERPEQYE 588
+M S+ ++R + E + +R + L KK E EKL+ L ++ ++YE
Sbjct: 60 SMRSKVEKRMARETGRTQRELRRAVKLRKKLMTEDEKLIYNLRRAKKKVALLLQKLKKYE 119
Query: 589 V--------DKEGITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVENMHLHWKHRELVKI 640
+ D E +T E+ +K+G R + ++ +G RGVF G V+NMH+HWK E V++
Sbjct: 120 LPDLPAPRHDPELLTAEQLQAYKKIGFRNRNYVPVGVRGVFGGVVQNMHMHWKFHETVQV 179
Query: 641 ISKQRKIEAALQEARTLEVESGGILVAVERVNKGYAIILYRGKNYERPACLRPKTLLTKR 700
E + A L SGGI++ + II++RG+NY +P L P LTKR
Sbjct: 180 CCDNFPKEKIKEMAAMLTRLSGGIVINIHNTK---TIIMFRGRNYRQPKNLIPFNTLTKR 236
Query: 701 EAMKRSLEAQRRQSLKLHVLELTRNIEKLKLQL 733
+A+ ++ Q +S KL NI+K++ QL
Sbjct: 237 KALFKARFEQALESQKL-------NIKKIETQL 262
Score = 42.4 bits (98), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 60/112 (53%), Gaps = 6/112 (5%)
Query: 168 KEKEVPTLAELK-----LSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAE 222
K+ E+P L + L+ ++L+ + +G R + +G G+ G+V +H W+ E
Sbjct: 116 KKYELPDLPAPRHDPELLTAEQLQAYKKIGFRNRNYVPVGVRGVFGGVVQNMHMHWKFHE 175
Query: 223 VVKIVCEDLCRLNMKRTHDSLERKTGGLVVWRSGSK-IILYRGADYKYPYFL 273
V++ C++ + +K L R +GG+V+ +K II++RG +Y+ P L
Sbjct: 176 TVQVCCDNFPKEKIKEMAAMLTRLSGGIVINIHNTKTIIMFRGRNYRQPKNL 227
>gi|297604874|ref|NP_001056251.2| Os05g0551900 [Oryza sativa Japonica Group]
gi|255676553|dbj|BAF18165.2| Os05g0551900, partial [Oryza sativa Japonica Group]
Length = 73
Score = 72.0 bits (175), Expect = 2e-09, Method: Composition-based stats.
Identities = 33/47 (70%), Positives = 40/47 (85%)
Query: 421 GRNRNLQGLAAAIVKLWEKCEIAKIAVKRGAQNTNSEMMAQELKRLT 467
GRNRN QGLAAAIVKLWEK + KIAVKRG QNTN+++M++E+K T
Sbjct: 1 GRNRNHQGLAAAIVKLWEKSLVVKIAVKRGIQNTNNKLMSEEIKVWT 47
>gi|357134703|ref|XP_003568955.1| PREDICTED: uncharacterized protein LOC100832553 [Brachypodium
distachyon]
Length = 562
Score = 72.0 bits (175), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 80/144 (55%), Gaps = 10/144 (6%)
Query: 590 DKEGITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVENMHLHWKHRELVKIISKQRKIEA 649
D E +T E+ +K+G R + ++ +G RGVF G V+NMH+HWK E V++ E
Sbjct: 144 DPELLTAEQLQAYKKIGFRNRNYVPVGVRGVFGGVVQNMHMHWKFHETVQVCCDNFPKEK 203
Query: 650 ALQEARTLEVESGGILVAVERVNKGYAIILYRGKNYERPACLRPKTLLTKREAMKRSLEA 709
+ A L SGGI+V + II++RG+NY +P L P LTKR+A+ ++
Sbjct: 204 IKEMAAMLTRLSGGIVVNIHNTK---TIIMFRGRNYRQPKNLIPFNTLTKRKALFKARYE 260
Query: 710 QRRQSLKLHVLELTRNIEKLKLQL 733
Q +S KL NI+K++ QL
Sbjct: 261 QALESQKL-------NIKKIETQL 277
Score = 43.5 bits (101), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 59/109 (54%), Gaps = 6/109 (5%)
Query: 168 KEKEVPTLAELK-----LSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAE 222
K+ E+P L + L+ ++L+ + +G R + +G G+ G+V +H W+ E
Sbjct: 131 KKYELPDLPAPRHDPELLTAEQLQAYKKIGFRNRNYVPVGVRGVFGGVVQNMHMHWKFHE 190
Query: 223 VVKIVCEDLCRLNMKRTHDSLERKTGGLVVWRSGSK-IILYRGADYKYP 270
V++ C++ + +K L R +GG+VV +K II++RG +Y+ P
Sbjct: 191 TVQVCCDNFPKEKIKEMAAMLTRLSGGIVVNIHNTKTIIMFRGRNYRQP 239
>gi|255589857|ref|XP_002535109.1| conserved hypothetical protein [Ricinus communis]
gi|223524018|gb|EEF27274.1| conserved hypothetical protein [Ricinus communis]
Length = 748
Score = 72.0 bits (175), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 53/90 (58%)
Query: 180 LSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRT 239
L+ +E++ L + R++L +G+ G+T +++ IH W+ V KI C +C ++M
Sbjct: 252 LTTEEVKILIEGCLKTRRQLNMGRDGLTHNMLDNIHAHWKRRRVCKIKCMGVCTVDMDNV 311
Query: 240 HDSLERKTGGLVVWRSGSKIILYRGADYKY 269
LE +TGG V++R G + L+RG +Y Y
Sbjct: 312 CQQLEERTGGKVIYRKGGVVYLFRGRNYNY 341
Score = 50.1 bits (118), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 49/98 (50%), Gaps = 4/98 (4%)
Query: 588 EVDKEGITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVENMHLHWKHRELVKIISKQRKI 647
E+ E +T EE +L + L+ + L MGR G+ ++N+H HWK R + KI
Sbjct: 246 EILGEPLTTEEVKILIEGCLKTRRQLNMGRDGLTHNMLDNIHAHWKRRRVCKIKCMGVCT 305
Query: 648 EAALQEARTLEVESGGILVAVERVNKGYAIILYRGKNY 685
+ LE +GG ++ KG + L+RG+NY
Sbjct: 306 VDMDNVCQQLEERTGGKVI----YRKGGVVYLFRGRNY 339
Score = 46.2 bits (108), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 54/112 (48%), Gaps = 5/112 (4%)
Query: 376 LLPATVPGYRRPFRLLPYGVQPKLTNDEMTTLRRLGRPLPCHFALGRNRNLQGLAAAIVK 435
L P Y R + P G LT +E + +RR GR L L +N L + +
Sbjct: 351 LWKPVTPVYPRLIKRAPEG----LTLEEASEMRRKGRKLIPICKLAKNGVYCNLVKEVRE 406
Query: 436 LWEKCEIAKIAVKRGAQNTNSEMMAQELKRLTGGTLLSRDREFIVFYRGKDF 487
+E+CE+ +I + G ++ + +LK L L+S + E I+ +RG+D+
Sbjct: 407 AFEECELVRIDCQ-GVNGSDYRKVGAKLKELVPCLLISFEHEHILMWRGRDW 457
>gi|413917671|gb|AFW57603.1| hypothetical protein ZEAMMB73_144408 [Zea mays]
Length = 520
Score = 72.0 bits (175), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 66/213 (30%), Positives = 108/213 (50%), Gaps = 29/213 (13%)
Query: 540 TMHSEQKERRSAEVAIRRTNIRLSRVLEKK--AEAEKLLAELEE---------ERPEQYE 588
TM ++ ++R + E + +R + L KK E EK + L ++ ++YE
Sbjct: 63 TMRTKVEKRMARETGRTQRELRRAVKLRKKLMTEDEKFIYNLRRAKKKVALLLQKLKKYE 122
Query: 589 V--------DKEGITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVENMHLHWKHRELVKI 640
+ D E +T E+ +K+G R + ++ +G RGVF G V+NMH+HWK E V++
Sbjct: 123 LPDLQAPRHDPELLTAEQLQAYKKIGFRNRNYVPVGVRGVFGGVVQNMHMHWKFHETVQV 182
Query: 641 ISKQRKIEAALQEARTLEVESGGILVAVERVNKGYAIILYRGKNYERPACLRPKTLLTKR 700
E + A L SGGI++ + II++RG+NY +P L P LTKR
Sbjct: 183 CCDNFPKEKIKEMAAMLTRLSGGIVINIHNTK---TIIMFRGRNYRQPKNLIPFNTLTKR 239
Query: 701 EAMKRSLEAQRRQSLKLHVLELTRNIEKLKLQL 733
+A+ ++ Q +S KL NI+K++ QL
Sbjct: 240 KALFKARFEQALESQKL-------NIKKIETQL 265
Score = 43.1 bits (100), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 60/112 (53%), Gaps = 6/112 (5%)
Query: 168 KEKEVPTLAELK-----LSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAE 222
K+ E+P L + L+ ++L+ + +G R + +G G+ G+V +H W+ E
Sbjct: 119 KKYELPDLQAPRHDPELLTAEQLQAYKKIGFRNRNYVPVGVRGVFGGVVQNMHMHWKFHE 178
Query: 223 VVKIVCEDLCRLNMKRTHDSLERKTGGLVVWRSGSK-IILYRGADYKYPYFL 273
V++ C++ + +K L R +GG+V+ +K II++RG +Y+ P L
Sbjct: 179 TVQVCCDNFPKEKIKEMAAMLTRLSGGIVINIHNTKTIIMFRGRNYRQPKNL 230
>gi|224113759|ref|XP_002332503.1| predicted protein [Populus trichocarpa]
gi|222832483|gb|EEE70960.1| predicted protein [Populus trichocarpa]
Length = 699
Score = 71.6 bits (174), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 55/92 (59%)
Query: 180 LSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRT 239
L+ +E++ L + +++L +G+ G+T +++ IH W+ V KI C+ +C ++M
Sbjct: 248 LTQEEIQELVDGCLKAKRQLNMGRDGLTHNMLDNIHAHWKRRRVCKIKCKGVCTVDMDNV 307
Query: 240 HDSLERKTGGLVVWRSGSKIILYRGADYKYPY 271
LE +TGG +++R G + L+RG +Y Y +
Sbjct: 308 CQQLEERTGGKIIYRKGGVLYLFRGRNYNYRF 339
Score = 51.2 bits (121), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 4/98 (4%)
Query: 588 EVDKEGITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVENMHLHWKHRELVKIISKQRKI 647
E+ + +T+EE L L+ K L MGR G+ ++N+H HWK R + KI K
Sbjct: 242 EILGDPLTQEEIQELVDGCLKAKRQLNMGRDGLTHNMLDNIHAHWKRRRVCKIKCKGVCT 301
Query: 648 EAALQEARTLEVESGGILVAVERVNKGYAIILYRGKNY 685
+ LE +GG ++ KG + L+RG+NY
Sbjct: 302 VDMDNVCQQLEERTGGKII----YRKGGVLYLFRGRNY 335
Score = 41.6 bits (96), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 54/112 (48%), Gaps = 5/112 (4%)
Query: 376 LLPATVPGYRRPFRLLPYGVQPKLTNDEMTTLRRLGRPLPCHFALGRNRNLQGLAAAIVK 435
L P Y R + P G LT E + +R GR L LG+N + L + +
Sbjct: 347 LWKPVTPVYPRLIQRAPEG----LTLQEASGMRNKGRKLIPICKLGKNGVYRDLVRNVRE 402
Query: 436 LWEKCEIAKIAVKRGAQNTNSEMMAQELKRLTGGTLLSRDREFIVFYRGKDF 487
+E+CE+ +I + G ++ + +L+ L L+S + E I+ +RG+D+
Sbjct: 403 AFEECELVRINCQ-GMNGSDFRKIGAKLRDLVPCVLISFECEHILMWRGRDW 453
Score = 40.0 bits (92), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 48/95 (50%), Gaps = 4/95 (4%)
Query: 930 RAIQLSNRDRLLLRKQALRMKKR---PVLAVGRSNIVTGVAKAIKAHFEKYPLAIVNVKG 986
R IQ + L +R K R P+ +G++ + + + ++ FE+ L +N +G
Sbjct: 357 RLIQRAPEGLTLQEASGMRNKGRKLIPICKLGKNGVYRDLVRNVREAFEECELVRINCQG 416
Query: 987 RAKGTSVQEVVAKLEEATGAVLVSQEPSKVILYRG 1021
G+ +++ AKL + VL+S E ++++RG
Sbjct: 417 -MNGSDFRKIGAKLRDLVPCVLISFECEHILMWRG 450
>gi|356527769|ref|XP_003532480.1| PREDICTED: CRS2-associated factor 1, chloroplastic-like [Glycine
max]
Length = 723
Score = 71.6 bits (174), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 55/96 (57%), Gaps = 3/96 (3%)
Query: 180 LSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRT 239
L+ +E+R L + +++L IG+ G+T +++ IH W+ KI C+ +C ++M
Sbjct: 201 LTQEEIRDLVKSCMKAQRQLNIGRDGLTHNMLDNIHAHWKRRRACKIRCKGVCTVDMDNV 260
Query: 240 HDSLERKTGGLVVWRSGSKIILYRGADYKY---PYF 272
LE +TGG ++ R G + L+RG +Y Y P+F
Sbjct: 261 CHQLEERTGGKIIHRKGGVLYLFRGRNYNYKTRPHF 296
Score = 50.1 bits (118), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 48/98 (48%), Gaps = 4/98 (4%)
Query: 588 EVDKEGITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVENMHLHWKHRELVKIISKQRKI 647
E+ E +T+EE L K ++ + L +GR G+ ++N+H HWK R KI K
Sbjct: 195 EILGEPLTQEEIRDLVKSCMKAQRQLNIGRDGLTHNMLDNIHAHWKRRRACKIRCKGVCT 254
Query: 648 EAALQEARTLEVESGGILVAVERVNKGYAIILYRGKNY 685
LE +GG ++ KG + L+RG+NY
Sbjct: 255 VDMDNVCHQLEERTGGKIIH----RKGGVLYLFRGRNY 288
Score = 44.3 bits (103), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 66/141 (46%), Gaps = 17/141 (12%)
Query: 382 PGYRRPFRLLPYGVQPKLTNDEMTTLRRLGRPLPCHFALGRNRNLQGLAAAIVKLWEKCE 441
P Y R + +P G LT +E T +R+ G L LG+N L + + +E+CE
Sbjct: 306 PVYPRLVQRVPEG----LTLEEATKMRQKGSTLIPICKLGKNGVYCDLVKTVREAFEECE 361
Query: 442 IAKIAVKRGAQNTNSEMMAQELKRLTGGTLLSRDREFIVFYRGKDFLPPAASSAIEERRK 501
+ +I + G ++ + +L+ L TLLS + E I+ +RG P S+I +R
Sbjct: 362 LVRINCQ-GLNKSDYRKIGAKLRDLVPCTLLSFEYEHILMWRG-----PNWKSSIPDR-- 413
Query: 502 HEFSTSNDSKEEPELGNRHDN 522
+D KE ++ H N
Sbjct: 414 -----GDDRKESKQIEVDHKN 429
>gi|224055583|ref|XP_002298551.1| predicted protein [Populus trichocarpa]
gi|222845809|gb|EEE83356.1| predicted protein [Populus trichocarpa]
Length = 496
Score = 71.2 bits (173), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/140 (35%), Positives = 81/140 (57%), Gaps = 3/140 (2%)
Query: 590 DKEGITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVENMHLHWKHRELVKIISKQRKIEA 649
D E +T E+ +K+G R K ++ +G RGVF G V+NMH+HWK E V++ E
Sbjct: 77 DPELLTPEQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHMHWKFHETVQVSCDNFPKEK 136
Query: 650 ALQEARTLEVESGGILVAVERVNKGYAIILYRGKNYERPACLRPKTLLTKREAMKRSLEA 709
+ A + SGGI+V V V II++RG+NY +P L P LTKR+A+ ++
Sbjct: 137 IKEMATMIARLSGGIVVNVHNVK---TIIMFRGRNYRQPKDLIPLNTLTKRKALFKARFE 193
Query: 710 QRRQSLKLHVLELTRNIEKL 729
Q +S KL++ ++ + + ++
Sbjct: 194 QALESQKLNIKQIEQQLRRM 213
Score = 40.4 bits (93), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 213 GIHERWRHAEVVKIVCEDLCRLNMKRTHDSLERKTGGLVVWRSGSK-IILYRGADYKYP 270
+H W+ E V++ C++ + +K + R +GG+VV K II++RG +Y+ P
Sbjct: 114 NMHMHWKFHETVQVSCDNFPKEKIKEMATMIARLSGGIVVNVHNVKTIIMFRGRNYRQP 172
>gi|357144801|ref|XP_003573418.1| PREDICTED: CRS2-associated factor 1, mitochondrial-like
[Brachypodium distachyon]
Length = 437
Score = 71.2 bits (173), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 55/94 (58%), Gaps = 5/94 (5%)
Query: 174 TLAELKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCR 233
T AE + +R RT ++++ +G+ G+T ++N IH W+H E V++ C +
Sbjct: 159 TPAERTFVVDKCQRNRT-----KRQVNLGRDGLTHNMLNDIHNHWKHGEAVRVKCLGVPT 213
Query: 234 LNMKRTHDSLERKTGGLVVWRSGSKIILYRGADY 267
++M+ LE KTGGL++ R G ++ILYRG Y
Sbjct: 214 VDMQNVCHELEDKTGGLIIHRHGGQLILYRGRHY 247
Score = 43.1 bits (100), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
Query: 608 RMKAFLLMGRRGVFDGTVENMHLHWKHRELVKIISKQRKIEAALQEARTLEVESGGILVA 667
R K + +GR G+ + ++H HWKH E V++ LE ++GG+++
Sbjct: 174 RTKRQVNLGRDGLTHNMLNDIHNHWKHGEAVRVKCLGVPTVDMQNVCHELEDKTGGLIIH 233
Query: 668 VERVNKGYAIILYRGKNYE 686
G +ILYRG++Y
Sbjct: 234 ----RHGGQLILYRGRHYH 248
Score = 39.7 bits (91), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 68/156 (43%), Gaps = 18/156 (11%)
Query: 399 LTNDEMTTLRRLGRPLPCHFALGRNRNLQGLAAAIVKLWEKCEIAKIAVKRGAQNTNSEM 458
LT E +R+ G +P L +N L + + E+ +I K G ++
Sbjct: 278 LTVVETKAMRKKGLHVPVLTKLAKNGYYASLVPMVRDAFLTDELVRIDCK-GLPKSDYRK 336
Query: 459 MAQELKRLTGGTLLSRDREFIVFYRGKDF---------------LPPAASSAIEERRKHE 503
+ +L+ L L+S D+E I+ +RGKD+ L ++S E +HE
Sbjct: 337 IGVKLRDLVPCILVSFDKEQIIIWRGKDYDESMQNNLQRSFPSVLESESASVNNENGEHE 396
Query: 504 FSTSNDSKEEPELGNRHDNSGDNTQDEFGCTNDQKS 539
++S + + E G + + S D + DE C+ + S
Sbjct: 397 EASSESASVKNENGEQGETSSDWSSDE--CSENSSS 430
>gi|449443167|ref|XP_004139352.1| PREDICTED: CRS2-associated factor 1, chloroplastic-like [Cucumis
sativus]
gi|449521361|ref|XP_004167698.1| PREDICTED: CRS2-associated factor 1, chloroplastic-like [Cucumis
sativus]
Length = 745
Score = 71.2 bits (173), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 51/90 (56%)
Query: 180 LSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRT 239
L+ +E++ L I ++L IG+ G+T ++ IH W+ V KI C+ +C ++M
Sbjct: 252 LTKEEIKALIRGCINSNRQLNIGRDGLTHNMLENIHALWKRRRVCKIKCKGVCTVDMDNV 311
Query: 240 HDSLERKTGGLVVWRSGSKIILYRGADYKY 269
LE +TGG +++ G + LYRG +Y Y
Sbjct: 312 KQQLEERTGGKIIYSRGGALYLYRGRNYNY 341
Score = 50.4 bits (119), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 57/112 (50%), Gaps = 5/112 (4%)
Query: 376 LLPATVPGYRRPFRLLPYGVQPKLTNDEMTTLRRLGRPLPCHFALGRNRNLQGLAAAIVK 435
L P Y R + +P G LT +E+T +R+ GR L LG+N L + +
Sbjct: 351 LWKPAAPVYPRLVKHIPDG----LTLEEVTEMRKKGRKLIPICKLGKNGVYSALVKHVRE 406
Query: 436 LWEKCEIAKIAVKRGAQNTNSEMMAQELKRLTGGTLLSRDREFIVFYRGKDF 487
+E+CE+ +I + G ++ + +LK L L+S + E I+ +RG+D+
Sbjct: 407 AFEECELVRINCQ-GLNGSDFRKIGAKLKDLVPCVLISFESEHILLWRGRDW 457
Score = 46.6 bits (109), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 49/98 (50%), Gaps = 4/98 (4%)
Query: 588 EVDKEGITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVENMHLHWKHRELVKIISKQRKI 647
E+ E +T+EE L + + L +GR G+ +EN+H WK R + KI K
Sbjct: 246 EILGEPLTKEEIKALIRGCINSNRQLNIGRDGLTHNMLENIHALWKRRRVCKIKCKGVCT 305
Query: 648 EAALQEARTLEVESGGILVAVERVNKGYAIILYRGKNY 685
+ LE +GG ++ ++G A+ LYRG+NY
Sbjct: 306 VDMDNVKQQLEERTGGKII----YSRGGALYLYRGRNY 339
Score = 43.1 bits (100), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 59/114 (51%), Gaps = 15/114 (13%)
Query: 947 LRMKKR---PVLAVGRSNIVTGVAKAIKAHFEKYPLAIVNVKGRAKGTSVQEVVAKLEEA 1003
+R K R P+ +G++ + + + K ++ FE+ L +N +G G+ +++ AKL++
Sbjct: 378 MRKKGRKLIPICKLGKNGVYSALVKHVREAFEECELVRINCQG-LNGSDFRKIGAKLKDL 436
Query: 1004 TGAVLVSQEPSKVILYRG--WGAE---DESSPRGR------QNSRAKPSIVRDV 1046
VL+S E ++L+RG W + E +P G + + PSI +DV
Sbjct: 437 VPCVLISFESEHILLWRGRDWKSSLPYIERNPEGAKAHGTDETTIVAPSIEQDV 490
Score = 42.7 bits (99), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 47/95 (49%), Gaps = 2/95 (2%)
Query: 180 LSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRT 239
L+ +E+ +R G L K+GK G+ +V + E + E+V+I C+ L + ++
Sbjct: 370 LTLEEVTEMRKKGRKLIPICKLGKNGVYSALVKHVREAFEECELVRINCQGLNGSDFRKI 429
Query: 240 HDSLERKTGGLVVWRSGSKIILYRGADYK--YPYF 272
L+ +++ I+L+RG D+K PY
Sbjct: 430 GAKLKDLVPCVLISFESEHILLWRGRDWKSSLPYI 464
>gi|225445140|ref|XP_002280611.1| PREDICTED: CRS2-associated factor 1, chloroplastic [Vitis vinifera]
Length = 752
Score = 70.9 bits (172), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 53/90 (58%)
Query: 180 LSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRT 239
L+ +E++ L + +++L +G+ G+T +++ IH W+ V KI C+ +C ++M
Sbjct: 244 LTEEEIKELVQGCVKSKRQLNMGRDGLTHNMLDNIHAHWKRRRVCKIKCKGVCTVDMDNV 303
Query: 240 HDSLERKTGGLVVWRSGSKIILYRGADYKY 269
LE KTGG V++ G + L+RG +Y Y
Sbjct: 304 RQQLEEKTGGKVIYGKGGVLFLFRGRNYNY 333
Score = 53.1 bits (126), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 51/98 (52%), Gaps = 4/98 (4%)
Query: 588 EVDKEGITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVENMHLHWKHRELVKIISKQRKI 647
E+ E +TEEE L + ++ K L MGR G+ ++N+H HWK R + KI K
Sbjct: 238 EILGEPLTEEEIKELVQGCVKSKRQLNMGRDGLTHNMLDNIHAHWKRRRVCKIKCKGVCT 297
Query: 648 EAALQEARTLEVESGGILVAVERVNKGYAIILYRGKNY 685
+ LE ++GG ++ KG + L+RG+NY
Sbjct: 298 VDMDNVRQQLEEKTGGKVI----YGKGGVLFLFRGRNY 331
Score = 41.6 bits (96), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 24/107 (22%), Positives = 53/107 (49%)
Query: 180 LSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRT 239
L+ +E +R G L K+ K G+ +VN + E + E+V+I C+ L + ++
Sbjct: 362 LTLEEAGAMRKKGRKLIPICKLAKNGVYTDLVNNVREAFEECELVRINCQGLNASDYRKI 421
Query: 240 HDSLERKTGGLVVWRSGSKIILYRGADYKYPYFLADESSTDGASSDD 286
L+ +++ I+++RG+D+K+ + ++ + SD+
Sbjct: 422 GAKLKDLVPCVLISFEHEHILMWRGSDWKFLHPKPEDGCKEAKESDN 468
>gi|297818350|ref|XP_002877058.1| hypothetical protein ARALYDRAFT_484545 [Arabidopsis lyrata subsp.
lyrata]
gi|297322896|gb|EFH53317.1| hypothetical protein ARALYDRAFT_484545 [Arabidopsis lyrata subsp.
lyrata]
Length = 488
Score = 70.9 bits (172), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 56/211 (26%), Positives = 104/211 (49%), Gaps = 14/211 (6%)
Query: 590 DKEGITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVENMHLHWKHRELVKIISKQRKIEA 649
D E T E+ +K+G + K ++ +G RGVF G V+NMH+HWK E V++ E
Sbjct: 88 DPELFTSEQVQAFKKIGFKNKNYVPVGVRGVFGGVVQNMHMHWKFHETVQVCCDNFPKEK 147
Query: 650 ALQEARTLEVESGGILVAVERVNKGYAIILYRGKNYERPACLRPKTLLTKREAMKRSLEA 709
+ A + SGG+++ + V II++RG+NY +P L P LTKR+A+ ++
Sbjct: 148 IKEMASMIARLSGGVVINIHNVK---TIIMFRGRNYRQPKNLIPVNTLTKRKALFKARFE 204
Query: 710 QRRQSLKLHVLELTRNIEKLKLQLVKDKEANSLETIDESILPLVKEEIGDMQPAECMRSD 769
Q +S KL++ + + + ++ + S++ + + + ++ G
Sbjct: 205 QALESQKLNIKKTEQQLRRMGVNPEDPVAMASIQRVASTFFNAIDKKEG----------- 253
Query: 770 TSHEVNVQARGECGADLTSTESNDTGDATID 800
T + + + E GA + + E ++ GD D
Sbjct: 254 TPYVFHGDKQSERGASVDNREESEPGDEDSD 284
Score = 40.8 bits (94), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 213 GIHERWRHAEVVKIVCEDLCRLNMKRTHDSLERKTGGLVVWRSGSK-IILYRGADYKYP 270
+H W+ E V++ C++ + +K + R +GG+V+ K II++RG +Y+ P
Sbjct: 125 NMHMHWKFHETVQVCCDNFPKEKIKEMASMIARLSGGVVINIHNVKTIIMFRGRNYRQP 183
>gi|297738777|emb|CBI28022.3| unnamed protein product [Vitis vinifera]
Length = 723
Score = 70.9 bits (172), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 53/90 (58%)
Query: 180 LSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRT 239
L+ +E++ L + +++L +G+ G+T +++ IH W+ V KI C+ +C ++M
Sbjct: 244 LTEEEIKELVQGCVKSKRQLNMGRDGLTHNMLDNIHAHWKRRRVCKIKCKGVCTVDMDNV 303
Query: 240 HDSLERKTGGLVVWRSGSKIILYRGADYKY 269
LE KTGG V++ G + L+RG +Y Y
Sbjct: 304 RQQLEEKTGGKVIYGKGGVLFLFRGRNYNY 333
Score = 53.1 bits (126), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 51/98 (52%), Gaps = 4/98 (4%)
Query: 588 EVDKEGITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVENMHLHWKHRELVKIISKQRKI 647
E+ E +TEEE L + ++ K L MGR G+ ++N+H HWK R + KI K
Sbjct: 238 EILGEPLTEEEIKELVQGCVKSKRQLNMGRDGLTHNMLDNIHAHWKRRRVCKIKCKGVCT 297
Query: 648 EAALQEARTLEVESGGILVAVERVNKGYAIILYRGKNY 685
+ LE ++GG ++ KG + L+RG+NY
Sbjct: 298 VDMDNVRQQLEEKTGGKVI----YGKGGVLFLFRGRNY 331
Score = 41.6 bits (96), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/107 (22%), Positives = 53/107 (49%)
Query: 180 LSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRT 239
L+ +E +R G L K+ K G+ +VN + E + E+V+I C+ L + ++
Sbjct: 362 LTLEEAGAMRKKGRKLIPICKLAKNGVYTDLVNNVREAFEECELVRINCQGLNASDYRKI 421
Query: 240 HDSLERKTGGLVVWRSGSKIILYRGADYKYPYFLADESSTDGASSDD 286
L+ +++ I+++RG+D+K+ + ++ + SD+
Sbjct: 422 GAKLKDLVPCVLISFEHEHILMWRGSDWKFLHPKPEDGCKEAKESDN 468
>gi|125550822|gb|EAY96531.1| hypothetical protein OsI_18436 [Oryza sativa Indica Group]
Length = 560
Score = 70.9 bits (172), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 52/144 (36%), Positives = 80/144 (55%), Gaps = 10/144 (6%)
Query: 590 DKEGITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVENMHLHWKHRELVKIISKQRKIEA 649
D E +T E+ +K+G R + ++ +G RGVF G V+NMH+HWK E V++ E
Sbjct: 140 DPELLTAEQLQAYKKIGFRNRNYVPVGVRGVFGGVVQNMHMHWKFHETVQVCCDNFPKEK 199
Query: 650 ALQEARTLEVESGGILVAVERVNKGYAIILYRGKNYERPACLRPKTLLTKREAMKRSLEA 709
+ A L SGGI++ + II++RG+NY +P L P LTKR+A+ ++
Sbjct: 200 IKEMAAMLTRLSGGIVINIHNTK---TIIMFRGRNYRQPKNLIPLNTLTKRKALFKARFE 256
Query: 710 QRRQSLKLHVLELTRNIEKLKLQL 733
Q +S KL NI+K++ QL
Sbjct: 257 QALESQKL-------NIKKIETQL 273
Score = 43.1 bits (100), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 59/109 (54%), Gaps = 6/109 (5%)
Query: 168 KEKEVPTLAELK-----LSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAE 222
K+ E+P L + L+ ++L+ + +G R + +G G+ G+V +H W+ E
Sbjct: 127 KKYELPDLPAPRHDPELLTAEQLQAYKKIGFRNRNYVPVGVRGVFGGVVQNMHMHWKFHE 186
Query: 223 VVKIVCEDLCRLNMKRTHDSLERKTGGLVVWRSGSK-IILYRGADYKYP 270
V++ C++ + +K L R +GG+V+ +K II++RG +Y+ P
Sbjct: 187 TVQVCCDNFPKEKIKEMAAMLTRLSGGIVINIHNTKTIIMFRGRNYRQP 235
>gi|449450187|ref|XP_004142845.1| PREDICTED: uncharacterized protein LOC101215761 [Cucumis sativus]
Length = 619
Score = 70.5 bits (171), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 50/139 (35%), Positives = 79/139 (56%), Gaps = 3/139 (2%)
Query: 590 DKEGITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVENMHLHWKHRELVKIISKQRKIEA 649
D E +T E+ +K+G R + ++ +G RGVF G V+NMHLHWK E V++ E
Sbjct: 145 DPELLTPEQLQAYKKIGFRNRNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEK 204
Query: 650 ALQEARTLEVESGGILVAVERVNKGYAIILYRGKNYERPACLRPKTLLTKREAMKRSLEA 709
+ A L SGGI+V + V II++RG+NY +P L P LTKR+A+ ++
Sbjct: 205 IKEMATMLARLSGGIVVNIHDVK---TIIMFRGRNYRQPKNLIPINTLTKRKALFKARFE 261
Query: 710 QRRQSLKLHVLELTRNIEK 728
Q S KL++ ++ + + +
Sbjct: 262 QALDSQKLNIKKIEQELRR 280
Score = 41.6 bits (96), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 51/92 (55%), Gaps = 1/92 (1%)
Query: 180 LSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRT 239
L+ ++L+ + +G R + +G G+ G+V +H W+ E V++ C++ + +K
Sbjct: 149 LTPEQLQAYKKIGFRNRNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEM 208
Query: 240 HDSLERKTGGLVVWRSGSK-IILYRGADYKYP 270
L R +GG+VV K II++RG +Y+ P
Sbjct: 209 ATMLARLSGGIVVNIHDVKTIIMFRGRNYRQP 240
>gi|51038196|gb|AAT93999.1| unknow protein [Oryza sativa Japonica Group]
gi|222630175|gb|EEE62307.1| hypothetical protein OsJ_17096 [Oryza sativa Japonica Group]
Length = 560
Score = 70.5 bits (171), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 52/144 (36%), Positives = 80/144 (55%), Gaps = 10/144 (6%)
Query: 590 DKEGITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVENMHLHWKHRELVKIISKQRKIEA 649
D E +T E+ +K+G R + ++ +G RGVF G V+NMH+HWK E V++ E
Sbjct: 140 DPELLTAEQLQAYKKIGFRNRNYVPVGVRGVFGGVVQNMHMHWKFHETVQVCCDNFPKEK 199
Query: 650 ALQEARTLEVESGGILVAVERVNKGYAIILYRGKNYERPACLRPKTLLTKREAMKRSLEA 709
+ A L SGGI++ + II++RG+NY +P L P LTKR+A+ ++
Sbjct: 200 IKEMAAMLTRLSGGIVINIHNTK---TIIMFRGRNYRQPKNLIPLNTLTKRKALFKARFE 256
Query: 710 QRRQSLKLHVLELTRNIEKLKLQL 733
Q +S KL NI+K++ QL
Sbjct: 257 QALESQKL-------NIKKIETQL 273
Score = 43.1 bits (100), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 59/109 (54%), Gaps = 6/109 (5%)
Query: 168 KEKEVPTLAELK-----LSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAE 222
K+ E+P L + L+ ++L+ + +G R + +G G+ G+V +H W+ E
Sbjct: 127 KKYELPDLPAPRHDPELLTAEQLQAYKKIGFRNRNYVPVGVRGVFGGVVQNMHMHWKFHE 186
Query: 223 VVKIVCEDLCRLNMKRTHDSLERKTGGLVVWRSGSK-IILYRGADYKYP 270
V++ C++ + +K L R +GG+V+ +K II++RG +Y+ P
Sbjct: 187 TVQVCCDNFPKEKIKEMAAMLTRLSGGIVINIHNTKTIIMFRGRNYRQP 235
>gi|449483922|ref|XP_004156733.1| PREDICTED: uncharacterized protein LOC101226279 [Cucumis sativus]
Length = 619
Score = 70.5 bits (171), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 50/139 (35%), Positives = 79/139 (56%), Gaps = 3/139 (2%)
Query: 590 DKEGITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVENMHLHWKHRELVKIISKQRKIEA 649
D E +T E+ +K+G R + ++ +G RGVF G V+NMHLHWK E V++ E
Sbjct: 145 DPELLTPEQLQAYKKIGFRNRNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEK 204
Query: 650 ALQEARTLEVESGGILVAVERVNKGYAIILYRGKNYERPACLRPKTLLTKREAMKRSLEA 709
+ A L SGGI+V + V II++RG+NY +P L P LTKR+A+ ++
Sbjct: 205 IKEMATMLARLSGGIVVNIHDVK---TIIMFRGRNYRQPKNLIPINTLTKRKALFKARFE 261
Query: 710 QRRQSLKLHVLELTRNIEK 728
Q S KL++ ++ + + +
Sbjct: 262 QALDSQKLNIKKIEQELRR 280
Score = 41.6 bits (96), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 51/92 (55%), Gaps = 1/92 (1%)
Query: 180 LSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRT 239
L+ ++L+ + +G R + +G G+ G+V +H W+ E V++ C++ + +K
Sbjct: 149 LTPEQLQAYKKIGFRNRNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEM 208
Query: 240 HDSLERKTGGLVVWRSGSK-IILYRGADYKYP 270
L R +GG+VV K II++RG +Y+ P
Sbjct: 209 ATMLARLSGGIVVNIHDVKTIIMFRGRNYRQP 240
>gi|357132246|ref|XP_003567742.1| PREDICTED: CRS2-associated factor 1, chloroplastic-like
[Brachypodium distachyon]
Length = 702
Score = 70.5 bits (171), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 50/90 (55%)
Query: 180 LSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRT 239
LS +E+ L + +++L IG+ G+T ++ IH W+ V KI C+ +C ++M
Sbjct: 183 LSKEEVAELVKGNLKAKRQLNIGRDGLTHNMLENIHAHWKRKRVCKIKCKGVCTVDMDNV 242
Query: 240 HDSLERKTGGLVVWRSGSKIILYRGADYKY 269
LE + GG V+ R G + L+RG +Y Y
Sbjct: 243 CQQLEERVGGKVIHRQGGVVFLFRGRNYNY 272
Score = 53.5 bits (127), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 67/138 (48%), Gaps = 11/138 (7%)
Query: 365 WGYDPQPVDADLL--PATVPGYRRPFRLLPYGVQPKLTNDEMTTLRRLGRPLPCHFALGR 422
+ Y +PV +L PA P Y R + +P G LT+DE T +R+ GR L LG+
Sbjct: 270 YNYRTRPVFPLMLWKPAA-PVYPRLVKTVPDG----LTSDEATEMRKKGRQLTPVCKLGK 324
Query: 423 NRNLQGLAAAIVKLWEKCEIAKIAVKRGAQNTNSEMMAQELKRLTGGTLLSRDREFIVFY 482
N L + + +E C++ ++ G ++ + +LK L LLS + E I+ +
Sbjct: 325 NGVYANLVNEVREAFEACDLVRVDCS-GLNKSDCRKIGAKLKDLVPCILLSFEFEHILMW 383
Query: 483 RGKDF---LPPAASSAIE 497
RG D+ LPP+ E
Sbjct: 384 RGNDWRSSLPPSEEDNFE 401
Score = 50.4 bits (119), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 4/98 (4%)
Query: 588 EVDKEGITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVENMHLHWKHRELVKIISKQRKI 647
EV E +++EE L K L+ K L +GR G+ +EN+H HWK + + KI K
Sbjct: 177 EVLGEPLSKEEVAELVKGNLKAKRQLNIGRDGLTHNMLENIHAHWKRKRVCKIKCKGVCT 236
Query: 648 EAALQEARTLEVESGGILVAVERVNKGYAIILYRGKNY 685
+ LE GG ++ +G + L+RG+NY
Sbjct: 237 VDMDNVCQQLEERVGGKVIH----RQGGVVFLFRGRNY 270
>gi|15232195|ref|NP_189392.1| RNA-binding CRS1 / YhbY (CRM) domain protein [Arabidopsis thaliana]
gi|11994182|dbj|BAB01285.1| unnamed protein product [Arabidopsis thaliana]
gi|332643815|gb|AEE77336.1| RNA-binding CRS1 / YhbY (CRM) domain protein [Arabidopsis thaliana]
Length = 491
Score = 70.1 bits (170), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 79/140 (56%), Gaps = 3/140 (2%)
Query: 590 DKEGITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVENMHLHWKHRELVKIISKQRKIEA 649
D E T E+ +K+G + K ++ +G RGVF G V+NMH+HWK E V++ E
Sbjct: 88 DPELFTSEQVQAFKKIGFKNKNYVPVGVRGVFGGVVQNMHMHWKFHETVQVCCDNFPKEK 147
Query: 650 ALQEARTLEVESGGILVAVERVNKGYAIILYRGKNYERPACLRPKTLLTKREAMKRSLEA 709
+ A + SGG+++ + V II++RG+NY +P L P LTKR+A+ ++
Sbjct: 148 IKEMASMIARLSGGVVINIHNVK---TIIMFRGRNYRQPKNLIPVNTLTKRKALFKARFE 204
Query: 710 QRRQSLKLHVLELTRNIEKL 729
Q +S KL++ + + + ++
Sbjct: 205 QALESQKLNIKKTEQQLRRM 224
Score = 40.4 bits (93), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 213 GIHERWRHAEVVKIVCEDLCRLNMKRTHDSLERKTGGLVVWRSGSK-IILYRGADYKYP 270
+H W+ E V++ C++ + +K + R +GG+V+ K II++RG +Y+ P
Sbjct: 125 NMHMHWKFHETVQVCCDNFPKEKIKEMASMIARLSGGVVINIHNVKTIIMFRGRNYRQP 183
>gi|296087592|emb|CBI34848.3| unnamed protein product [Vitis vinifera]
Length = 545
Score = 70.1 bits (170), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 65/182 (35%), Positives = 99/182 (54%), Gaps = 13/182 (7%)
Query: 555 IRRTNIRLSRVLEKKAEAEKLLAELEEERPEQYEVDKEGITEEERYMLRKVGLRMKAFLL 614
+RR +++ +L+K + E L EL R D E +T E+ +K+G R K ++
Sbjct: 117 LRRAKKKVALLLQKLKKYE--LPELPAPRH-----DPELLTAEQLQAYKKIGFRNKNYVP 169
Query: 615 MGRRGVFDGTVENMHLHWKHRELVKIISKQRKIEAALQEARTLEVESGGILVAVERVNKG 674
+G RGVF G V+NMHLHWK E V++ E + A L SGGI++ V V
Sbjct: 170 VGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATMLARLSGGIVINVHDVK-- 227
Query: 675 YAIILYRGKNYERPACLRPKTLLTKRE--AMKRSLEAQRRQSLKLHVLELTR-NIEKLKL 731
II++RG+NY +P L P LTKR+ A K++ EA ++ L+ + NI+K++
Sbjct: 228 -TIIMFRGRNYRQPKNLIPINTLTKRKATATKKAKEAALFKARFEQALDSQKLNIKKIEQ 286
Query: 732 QL 733
QL
Sbjct: 287 QL 288
Score = 41.6 bits (96), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 51/92 (55%), Gaps = 1/92 (1%)
Query: 180 LSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRT 239
L+ ++L+ + +G + + +G G+ G+V +H W+ E V++ C++ + +K
Sbjct: 149 LTAEQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEM 208
Query: 240 HDSLERKTGGLVVWRSGSK-IILYRGADYKYP 270
L R +GG+V+ K II++RG +Y+ P
Sbjct: 209 ATMLARLSGGIVINVHDVKTIIMFRGRNYRQP 240
>gi|147799432|emb|CAN76866.1| hypothetical protein VITISV_012308 [Vitis vinifera]
Length = 393
Score = 69.7 bits (169), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 53/90 (58%)
Query: 180 LSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRT 239
L+ +E++ L + +++L +G+ G+T +++ IH W+ V KI C+ +C ++M
Sbjct: 244 LTEEEIKELVQGCVKSKRQLNMGRDGLTHNMLDNIHAHWKRRRVCKIKCKGVCTVDMDNV 303
Query: 240 HDSLERKTGGLVVWRSGSKIILYRGADYKY 269
LE KTGG V++ G + L+RG +Y Y
Sbjct: 304 RQQLEEKTGGKVIYGKGGVLFLFRGRNYNY 333
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 51/98 (52%), Gaps = 4/98 (4%)
Query: 588 EVDKEGITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVENMHLHWKHRELVKIISKQRKI 647
E+ E +TEEE L + ++ K L MGR G+ ++N+H HWK R + KI K
Sbjct: 238 EILGEPLTEEEIKELVQGCVKSKRQLNMGRDGLTHNMLDNIHAHWKRRRVCKIKCKGVCT 297
Query: 648 EAALQEARTLEVESGGILVAVERVNKGYAIILYRGKNY 685
+ LE ++GG ++ KG + L+RG+NY
Sbjct: 298 VDMDNVRQQLEEKTGGKVI----YGKGGVLFLFRGRNY 331
>gi|326525102|dbj|BAK07821.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 443
Score = 69.3 bits (168), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 47/72 (65%)
Query: 196 RKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRTHDSLERKTGGLVVWRS 255
++++ +G+ G+T ++N IH W+H E V++ C + ++M+ LE KTGGL++ R
Sbjct: 181 KRQINLGRDGLTHNMLNDIHNHWKHGEGVRVKCLGVPTVDMQNVCHELEDKTGGLIIHRH 240
Query: 256 GSKIILYRGADY 267
G ++ILYRG Y
Sbjct: 241 GGQLILYRGRHY 252
Score = 41.6 bits (96), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
Query: 608 RMKAFLLMGRRGVFDGTVENMHLHWKHRELVKIISKQRKIEAALQEARTLEVESGGILVA 667
R K + +GR G+ + ++H HWKH E V++ LE ++GG+++
Sbjct: 179 RTKRQINLGRDGLTHNMLNDIHNHWKHGEGVRVKCLGVPTVDMQNVCHELEDKTGGLIIH 238
Query: 668 VERVNKGYAIILYRGKNYE 686
G +ILYRG++Y
Sbjct: 239 ----RHGGQLILYRGRHYH 253
>gi|218188278|gb|EEC70705.1| hypothetical protein OsI_02075 [Oryza sativa Indica Group]
Length = 701
Score = 69.3 bits (168), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 49/90 (54%)
Query: 180 LSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRT 239
L+ +E+ L + +++L IG+ G+T ++ IH W+ V KI C+ +C ++M
Sbjct: 185 LTKEEVDELVKATLKTKRQLNIGRDGLTHNMLENIHSHWKRKRVCKIKCKGVCTVDMDNV 244
Query: 240 HDSLERKTGGLVVWRSGSKIILYRGADYKY 269
LE K GG V+ G I L+RG +Y Y
Sbjct: 245 CQQLEEKVGGKVIHHQGGVIFLFRGRNYNY 274
Score = 54.3 bits (129), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 65/131 (49%), Gaps = 11/131 (8%)
Query: 365 WGYDPQPVDADLL--PATVPGYRRPFRLLPYGVQPKLTNDEMTTLRRLGRPLPCHFALGR 422
+ Y +P+ +L PA P Y R + +P G LT DE +R+ GR LP LG+
Sbjct: 272 YNYRTRPIYPLMLWKPAA-PVYPRLVKKIPDG----LTPDEAEDMRKRGRQLPPICKLGK 326
Query: 423 NRNLQGLAAAIVKLWEKCEIAKIAVKRGAQNTNSEMMAQELKRLTGGTLLSRDREFIVFY 482
N L + + +E C++ ++ G ++ + +LK L TLLS + E I+ +
Sbjct: 327 NGVYLNLVKQVREAFEACDLVRVDCS-GLNKSDCRKIGAKLKDLVPCTLLSFEFEHILMW 385
Query: 483 RGKDF---LPP 490
RG D+ LPP
Sbjct: 386 RGNDWKSSLPP 396
Score = 53.1 bits (126), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 51/98 (52%), Gaps = 4/98 (4%)
Query: 588 EVDKEGITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVENMHLHWKHRELVKIISKQRKI 647
EV E +T+EE L K L+ K L +GR G+ +EN+H HWK + + KI K
Sbjct: 179 EVLGEPLTKEEVDELVKATLKTKRQLNIGRDGLTHNMLENIHSHWKRKRVCKIKCKGVCT 238
Query: 648 EAALQEARTLEVESGGILVAVERVNKGYAIILYRGKNY 685
+ LE + GG ++ ++G I L+RG+NY
Sbjct: 239 VDMDNVCQQLEEKVGGKVIH----HQGGVIFLFRGRNY 272
>gi|162462028|ref|NP_001105220.1| CRS2-associated factor 1, chloroplastic precursor [Zea mays]
gi|75147312|sp|Q84N49.1|CAF1P_MAIZE RecName: Full=CRS2-associated factor 1, chloroplastic; AltName:
Full=Chloroplastic group IIA intron splicing facilitator
CRS2-associated factor 1; Flags: Precursor
gi|30349367|gb|AAP22135.1| CRS2-associated factor 1 [Zea mays]
Length = 674
Score = 69.3 bits (168), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 50/90 (55%)
Query: 180 LSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRT 239
L+ +E+ L + +++L +G+ G+T ++ IH W+ V KI C+ +C ++M
Sbjct: 185 LTKEEVSELVKGSLKSKRQLNMGRDGLTHNMLENIHSHWKRKRVCKIKCKGVCTIDMDNI 244
Query: 240 HDSLERKTGGLVVWRSGSKIILYRGADYKY 269
LE K GG V+ R G I L+RG +Y Y
Sbjct: 245 CHQLEEKVGGKVIHRQGGVIFLFRGRNYNY 274
Score = 51.6 bits (122), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 47/94 (50%), Gaps = 4/94 (4%)
Query: 592 EGITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVENMHLHWKHRELVKIISKQRKIEAAL 651
E +T+EE L K L+ K L MGR G+ +EN+H HWK + + KI K
Sbjct: 183 EPLTKEEVSELVKGSLKSKRQLNMGRDGLTHNMLENIHSHWKRKRVCKIKCKGVCTIDMD 242
Query: 652 QEARTLEVESGGILVAVERVNKGYAIILYRGKNY 685
LE + GG ++ +G I L+RG+NY
Sbjct: 243 NICHQLEEKVGGKVIH----RQGGVIFLFRGRNY 272
Score = 50.4 bits (119), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 64/142 (45%), Gaps = 8/142 (5%)
Query: 380 TVPGYRRPFRLLPYGVQPKLTNDEMTTLRRLGRPLPCHFALGRNRNLQGLAAAIVKLWEK 439
P Y R +P G+ P DE T +R G LP LG+N L + + +E
Sbjct: 288 VAPVYPRLVTKVPGGLTP----DEATEMRTRGHQLPPICKLGKNGVYANLVNQVREAFEA 343
Query: 440 CEIAKIAVKRGAQNTNSEMMAQELKRLTGGTLLSRDREFIVFYRGKDF---LPPAASSAI 496
C++ ++ G ++ + +LK L LLS + E I+ +RG D+ LPP +S
Sbjct: 344 CDLVRVDCS-GLNKSDCRKIGAKLKDLVPCILLSFEFEHILMWRGSDWKSSLPPLENSYE 402
Query: 497 EERRKHEFSTSNDSKEEPELGN 518
+ + FS +++ GN
Sbjct: 403 VTKVQESFSGKESNEKVTHSGN 424
Score = 42.4 bits (98), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 46/89 (51%)
Query: 180 LSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRT 239
L+ E +RT G L K+GK G+ +VN + E + ++V++ C L + + ++
Sbjct: 303 LTPDEATEMRTRGHQLPPICKLGKNGVYANLVNQVREAFEACDLVRVDCSGLNKSDCRKI 362
Query: 240 HDSLERKTGGLVVWRSGSKIILYRGADYK 268
L+ +++ I+++RG+D+K
Sbjct: 363 GAKLKDLVPCILLSFEFEHILMWRGSDWK 391
>gi|115436730|ref|NP_001043122.1| Os01g0495900 [Oryza sativa Japonica Group]
gi|75109409|sp|Q5VMQ5.1|CAF1P_ORYSJ RecName: Full=CRS2-associated factor 1, chloroplastic; AltName:
Full=Chloroplastic group IIA intron splicing facilitator
CRS2-associated factor 1; Flags: Precursor
gi|55297418|dbj|BAD69270.1| putative CRS2-associated factor 1 [Oryza sativa Japonica Group]
gi|55297612|dbj|BAD68987.1| putative CRS2-associated factor 1 [Oryza sativa Japonica Group]
gi|113532653|dbj|BAF05036.1| Os01g0495900 [Oryza sativa Japonica Group]
gi|215694476|dbj|BAG89423.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222618506|gb|EEE54638.1| hypothetical protein OsJ_01906 [Oryza sativa Japonica Group]
Length = 701
Score = 69.3 bits (168), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 49/90 (54%)
Query: 180 LSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRT 239
L+ +E+ L + +++L IG+ G+T ++ IH W+ V KI C+ +C ++M
Sbjct: 185 LTKEEVDELVKATLKTKRQLNIGRDGLTHNMLENIHSHWKRKRVCKIKCKGVCTVDMDNV 244
Query: 240 HDSLERKTGGLVVWRSGSKIILYRGADYKY 269
LE K GG V+ G I L+RG +Y Y
Sbjct: 245 CQQLEEKVGGKVIHHQGGVIFLFRGRNYNY 274
Score = 54.3 bits (129), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 65/131 (49%), Gaps = 11/131 (8%)
Query: 365 WGYDPQPVDADLL--PATVPGYRRPFRLLPYGVQPKLTNDEMTTLRRLGRPLPCHFALGR 422
+ Y +P+ +L PA P Y R + +P G LT DE +R+ GR LP LG+
Sbjct: 272 YNYRTRPIYPLMLWKPAA-PVYPRLVKKIPDG----LTPDEAEDMRKRGRQLPPICKLGK 326
Query: 423 NRNLQGLAAAIVKLWEKCEIAKIAVKRGAQNTNSEMMAQELKRLTGGTLLSRDREFIVFY 482
N L + + +E C++ ++ G ++ + +LK L TLLS + E I+ +
Sbjct: 327 NGVYLNLVKQVREAFEACDLVRVDCS-GLNKSDCRKIGAKLKDLVPCTLLSFEFEHILMW 385
Query: 483 RGKDF---LPP 490
RG D+ LPP
Sbjct: 386 RGNDWKSSLPP 396
Score = 53.1 bits (126), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 51/98 (52%), Gaps = 4/98 (4%)
Query: 588 EVDKEGITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVENMHLHWKHRELVKIISKQRKI 647
EV E +T+EE L K L+ K L +GR G+ +EN+H HWK + + KI K
Sbjct: 179 EVLGEPLTKEEVDELVKATLKTKRQLNIGRDGLTHNMLENIHSHWKRKRVCKIKCKGVCT 238
Query: 648 EAALQEARTLEVESGGILVAVERVNKGYAIILYRGKNY 685
+ LE + GG ++ ++G I L+RG+NY
Sbjct: 239 VDMDNVCQQLEEKVGGKVIH----HQGGVIFLFRGRNY 272
>gi|242082009|ref|XP_002445773.1| hypothetical protein SORBIDRAFT_07g025550 [Sorghum bicolor]
gi|241942123|gb|EES15268.1| hypothetical protein SORBIDRAFT_07g025550 [Sorghum bicolor]
Length = 674
Score = 69.3 bits (168), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 50/90 (55%)
Query: 180 LSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRT 239
L+ +E+ L + +++L +G+ G+T ++ IH W+ V KI C+ +C ++M
Sbjct: 185 LTKEEVFELVKGSLKTKRQLNMGRDGLTHNMLENIHSHWKRKRVCKIKCKGVCTVDMDNI 244
Query: 240 HDSLERKTGGLVVWRSGSKIILYRGADYKY 269
LE K GG V+ R G I L+RG +Y Y
Sbjct: 245 CQQLEEKVGGKVIHRQGGVIFLFRGRNYNY 274
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 49/94 (52%), Gaps = 4/94 (4%)
Query: 592 EGITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVENMHLHWKHRELVKIISKQRKIEAAL 651
E +T+EE + L K L+ K L MGR G+ +EN+H HWK + + KI K
Sbjct: 183 EPLTKEEVFELVKGSLKTKRQLNMGRDGLTHNMLENIHSHWKRKRVCKIKCKGVCTVDMD 242
Query: 652 QEARTLEVESGGILVAVERVNKGYAIILYRGKNY 685
+ LE + GG ++ +G I L+RG+NY
Sbjct: 243 NICQQLEEKVGGKVIH----RQGGVIFLFRGRNY 272
Score = 53.5 bits (127), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 64/137 (46%), Gaps = 8/137 (5%)
Query: 380 TVPGYRRPFRLLPYGVQPKLTNDEMTTLRRLGRPLPCHFALGRNRNLQGLAAAIVKLWEK 439
P Y R +P G LT DE T +R GR LP LG+N L + + +E
Sbjct: 288 VAPVYPRLVTKVPGG----LTPDEATEMRARGRQLPPICKLGKNGVYANLVKQVREAFEA 343
Query: 440 CEIAKIAVKRGAQNTNSEMMAQELKRLTGGTLLSRDREFIVFYRGKDF---LPPAASSAI 496
C++ ++ G ++ + +LK L LLS + E I+ +RG D+ LPP ++
Sbjct: 344 CDLVRVDCS-GLNKSDCRKIGAKLKDLVPCILLSFEFEHILMWRGSDWKSSLPPLEENSF 402
Query: 497 EERRKHEFSTSNDSKEE 513
E + E + +S E+
Sbjct: 403 EVAKVQESLSGKESNEK 419
>gi|222618317|gb|EEE54449.1| hypothetical protein OsJ_01538 [Oryza sativa Japonica Group]
Length = 587
Score = 68.9 bits (167), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 67/127 (52%), Gaps = 9/127 (7%)
Query: 154 GRQKW-LAKNSKMNEKEKEVPTLAELKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVN 212
GR+K LA+ S + + +E L E L+ E+R L I ++L IG+ G+T ++
Sbjct: 185 GRRKLDLARVSPGDGRSREE-VLGE-PLTAAEVRDLVKPHISHNRQLNIGRDGLTHNMLE 242
Query: 213 GIHERWRHAEVVKIVCEDLCRLNMKRTHDSLERKTGGLVVWRSGSKIILYRGADY----- 267
IH WR E+ K+ C + ++MK LE K+GG V+ R G + LYRG +Y
Sbjct: 243 MIHCHWRRQEICKVRCRGVPTVDMKNLCYHLEEKSGGKVIHRVGGVVFLYRGRNYNPRTR 302
Query: 268 -KYPYFL 273
+YP L
Sbjct: 303 PRYPLML 309
Score = 45.4 bits (106), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 92/210 (43%), Gaps = 38/210 (18%)
Query: 588 EVDKEGITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVENMHLHWKHRELVKIISKQRKI 647
EV E +T E L K + L +GR G+ +E +H HW+ +E+ K+ +
Sbjct: 204 EVLGEPLTAAEVRDLVKPHISHNRQLNIGRDGLTHNMLEMIHCHWRRQEICKVRCRGVPT 263
Query: 648 EAALQEARTLEVESGGILVAVERVNKGYAIILYRGKNYE------------RPAC-LRPK 694
LE +SGG + + RV G + LYRG+NY +PA + PK
Sbjct: 264 VDMKNLCYHLEEKSGGKV--IHRV--GGVVFLYRGRNYNPRTRPRYPLMLWKPATPVYPK 319
Query: 695 TL------LTKREAMKRSLEAQRRQSLKLHVLELTRNIEKLKLQLVKDK----EANSLET 744
+ LTK EA E +RR L + +L +N + + LV+D E + L
Sbjct: 320 LIQEAPEGLTKEEAD----EMRRRGKDLLPICKLAKN--GIYIYLVRDVRDAFEGSDLVK 373
Query: 745 ID-ESILPLVKEEIG----DMQPAECMRSD 769
ID E + P ++IG D+ P + D
Sbjct: 374 IDCEGLNPSDYKKIGAKLRDLVPCVLLSFD 403
>gi|125525663|gb|EAY73777.1| hypothetical protein OsI_01650 [Oryza sativa Indica Group]
Length = 609
Score = 68.9 bits (167), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 67/127 (52%), Gaps = 9/127 (7%)
Query: 154 GRQKW-LAKNSKMNEKEKEVPTLAELKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVN 212
GR+K LA+ S + + +E L E L+ E+R L I ++L IG+ G+T ++
Sbjct: 207 GRRKLDLARVSPGDGRSREE-VLGE-PLTAAEVRDLVKPHISHNRQLNIGRDGLTHNMLE 264
Query: 213 GIHERWRHAEVVKIVCEDLCRLNMKRTHDSLERKTGGLVVWRSGSKIILYRGADY----- 267
IH WR E+ K+ C + ++MK LE K+GG V+ R G + LYRG +Y
Sbjct: 265 MIHCHWRRQEICKVRCRGVPTVDMKNLCYHLEEKSGGKVIHRVGGVVFLYRGRNYNPRTR 324
Query: 268 -KYPYFL 273
+YP L
Sbjct: 325 PRYPLML 331
Score = 45.4 bits (106), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 92/210 (43%), Gaps = 38/210 (18%)
Query: 588 EVDKEGITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVENMHLHWKHRELVKIISKQRKI 647
EV E +T E L K + L +GR G+ +E +H HW+ +E+ K+ +
Sbjct: 226 EVLGEPLTAAEVRDLVKPHISHNRQLNIGRDGLTHNMLEMIHCHWRRQEICKVRCRGVPT 285
Query: 648 EAALQEARTLEVESGGILVAVERVNKGYAIILYRGKNYE------------RPAC-LRPK 694
LE +SGG + + RV G + LYRG+NY +PA + PK
Sbjct: 286 VDMKNLCYHLEEKSGGKV--IHRV--GGVVFLYRGRNYNPRTRPRYPLMLWKPATPVYPK 341
Query: 695 TL------LTKREAMKRSLEAQRRQSLKLHVLELTRNIEKLKLQLVKDK----EANSLET 744
+ LTK EA E +RR L + +L +N + + LV+D E + L
Sbjct: 342 LIQEAPEGLTKEEAD----EMRRRGKDLLPICKLAKN--GIYIYLVRDVRDAFEGSDLVK 395
Query: 745 ID-ESILPLVKEEIG----DMQPAECMRSD 769
ID E + P ++IG D+ P + D
Sbjct: 396 IDCEGLNPSDYKKIGAKLRDLVPCVLLSFD 425
>gi|115436276|ref|NP_001042896.1| Os01g0323300 [Oryza sativa Japonica Group]
gi|75115027|sp|Q657G7.1|CAF2P_ORYSJ RecName: Full=CRS2-associated factor 2, chloroplastic; AltName:
Full=Chloroplastic group IIA intron splicing facilitator
CRS2-associated factor 2; Flags: Precursor
gi|52075771|dbj|BAD44991.1| putative CRS2-associated factor 2 [Oryza sativa Japonica Group]
gi|52076260|dbj|BAD45045.1| putative CRS2-associated factor 2 [Oryza sativa Japonica Group]
gi|113532427|dbj|BAF04810.1| Os01g0323300 [Oryza sativa Japonica Group]
Length = 607
Score = 68.9 bits (167), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 67/127 (52%), Gaps = 9/127 (7%)
Query: 154 GRQKW-LAKNSKMNEKEKEVPTLAELKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVN 212
GR+K LA+ S + + +E L E L+ E+R L I ++L IG+ G+T ++
Sbjct: 205 GRRKLDLARVSPGDGRSREE-VLGE-PLTAAEVRDLVKPHISHNRQLNIGRDGLTHNMLE 262
Query: 213 GIHERWRHAEVVKIVCEDLCRLNMKRTHDSLERKTGGLVVWRSGSKIILYRGADY----- 267
IH WR E+ K+ C + ++MK LE K+GG V+ R G + LYRG +Y
Sbjct: 263 MIHCHWRRQEICKVRCRGVPTVDMKNLCYHLEEKSGGKVIHRVGGVVFLYRGRNYNPRTR 322
Query: 268 -KYPYFL 273
+YP L
Sbjct: 323 PRYPLML 329
Score = 45.4 bits (106), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 92/210 (43%), Gaps = 38/210 (18%)
Query: 588 EVDKEGITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVENMHLHWKHRELVKIISKQRKI 647
EV E +T E L K + L +GR G+ +E +H HW+ +E+ K+ +
Sbjct: 224 EVLGEPLTAAEVRDLVKPHISHNRQLNIGRDGLTHNMLEMIHCHWRRQEICKVRCRGVPT 283
Query: 648 EAALQEARTLEVESGGILVAVERVNKGYAIILYRGKNYE------------RPAC-LRPK 694
LE +SGG + + RV G + LYRG+NY +PA + PK
Sbjct: 284 VDMKNLCYHLEEKSGGKV--IHRV--GGVVFLYRGRNYNPRTRPRYPLMLWKPATPVYPK 339
Query: 695 TL------LTKREAMKRSLEAQRRQSLKLHVLELTRNIEKLKLQLVKDK----EANSLET 744
+ LTK EA E +RR L + +L +N + + LV+D E + L
Sbjct: 340 LIQEAPEGLTKEEAD----EMRRRGKDLLPICKLAKN--GIYIYLVRDVRDAFEGSDLVK 393
Query: 745 ID-ESILPLVKEEIG----DMQPAECMRSD 769
ID E + P ++IG D+ P + D
Sbjct: 394 IDCEGLNPSDYKKIGAKLRDLVPCVLLSFD 423
>gi|194688996|gb|ACF78582.1| unknown [Zea mays]
gi|194700546|gb|ACF84357.1| unknown [Zea mays]
gi|223974875|gb|ACN31625.1| unknown [Zea mays]
Length = 560
Score = 68.9 bits (167), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 50/90 (55%)
Query: 180 LSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRT 239
L+ +E+ L + +++L +G+ G+T ++ IH W+ V KI C+ +C ++M
Sbjct: 71 LTKEEVSELVKGSLKSKRQLNMGRDGLTHNMLENIHSHWKRKRVCKIKCKGVCTIDMDNI 130
Query: 240 HDSLERKTGGLVVWRSGSKIILYRGADYKY 269
LE K GG V+ R G I L+RG +Y Y
Sbjct: 131 CHQLEEKVGGKVIHRQGGVIFLFRGRNYNY 160
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 71/158 (44%), Gaps = 9/158 (5%)
Query: 365 WGYDPQPVDADLLPATV-PGYRRPFRLLPYGVQPKLTNDEMTTLRRLGRPLPCHFALGRN 423
+ Y +P +L V P Y R +P G+ P DE T +R G LP LG+N
Sbjct: 158 YNYRTRPCFPLMLWKPVAPVYPRLVTKVPGGLTP----DEATEMRTRGHQLPPICKLGKN 213
Query: 424 RNLQGLAAAIVKLWEKCEIAKIAVKRGAQNTNSEMMAQELKRLTGGTLLSRDREFIVFYR 483
L + + +E C++ ++ G ++ + +LK L LLS + E I+ +R
Sbjct: 214 GVYANLVNQVREAFEACDLVRVDCS-GLNKSDCRKIGAKLKDLVPCILLSFEFEHILMWR 272
Query: 484 GKDF---LPPAASSAIEERRKHEFSTSNDSKEEPELGN 518
G D+ LPP +S + + FS +++ GN
Sbjct: 273 GSDWKSSLPPLENSYEVTKVQESFSGKESNEKVTHSGN 310
Score = 51.2 bits (121), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 47/94 (50%), Gaps = 4/94 (4%)
Query: 592 EGITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVENMHLHWKHRELVKIISKQRKIEAAL 651
E +T+EE L K L+ K L MGR G+ +EN+H HWK + + KI K
Sbjct: 69 EPLTKEEVSELVKGSLKSKRQLNMGRDGLTHNMLENIHSHWKRKRVCKIKCKGVCTIDMD 128
Query: 652 QEARTLEVESGGILVAVERVNKGYAIILYRGKNY 685
LE + GG ++ +G I L+RG+NY
Sbjct: 129 NICHQLEEKVGGKVIH----RQGGVIFLFRGRNY 158
Score = 41.6 bits (96), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 46/89 (51%)
Query: 180 LSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRT 239
L+ E +RT G L K+GK G+ +VN + E + ++V++ C L + + ++
Sbjct: 189 LTPDEATEMRTRGHQLPPICKLGKNGVYANLVNQVREAFEACDLVRVDCSGLNKSDCRKI 248
Query: 240 HDSLERKTGGLVVWRSGSKIILYRGADYK 268
L+ +++ I+++RG+D+K
Sbjct: 249 GAKLKDLVPCILLSFEFEHILMWRGSDWK 277
>gi|194697426|gb|ACF82797.1| unknown [Zea mays]
Length = 611
Score = 68.2 bits (165), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 52/100 (52%), Gaps = 6/100 (6%)
Query: 180 LSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRT 239
L+ E+R L I ++L IG+ G+T ++ IH WR E+ K+ C + ++MK
Sbjct: 234 LTPSEVRALVKPHISHNRQLNIGRDGLTHNMLEMIHCHWRRQEICKVRCRGVPTVDMKNL 293
Query: 240 HDSLERKTGGLVVWRSGSKIILYRGADY------KYPYFL 273
LE K+GG V+ R G + LYRG Y +YP L
Sbjct: 294 CYHLEEKSGGKVIHRVGGVVFLYRGRHYDPKTRPRYPLML 333
Score = 44.3 bits (103), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 48/99 (48%), Gaps = 4/99 (4%)
Query: 588 EVDKEGITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVENMHLHWKHRELVKIISKQRKI 647
EV E +T E L K + L +GR G+ +E +H HW+ +E+ K+ +
Sbjct: 228 EVLGEPLTPSEVRALVKPHISHNRQLNIGRDGLTHNMLEMIHCHWRRQEICKVRCRGVPT 287
Query: 648 EAALQEARTLEVESGGILVAVERVNKGYAIILYRGKNYE 686
LE +SGG + + RV G + LYRG++Y+
Sbjct: 288 VDMKNLCYHLEEKSGGKV--IHRV--GGVVFLYRGRHYD 322
>gi|162464008|ref|NP_001105669.1| CRS2-associated factor 2, chloroplastic precursor [Zea mays]
gi|75147311|sp|Q84N48.1|CAF2P_MAIZE RecName: Full=CRS2-associated factor 2, chloroplastic; AltName:
Full=Chloroplastic group IIA intron splicing facilitator
CRS2-associated factor 2; Flags: Precursor
gi|30349369|gb|AAP22136.1| CRS2-associated factor 2 [Zea mays]
gi|414877310|tpg|DAA54441.1| TPA: crs2 associated factor2 [Zea mays]
Length = 611
Score = 67.8 bits (164), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 52/100 (52%), Gaps = 6/100 (6%)
Query: 180 LSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRT 239
L+ E+R L I ++L IG+ G+T ++ IH WR E+ K+ C + ++MK
Sbjct: 234 LTPSEVRALVKPHISHNRQLNIGRDGLTHNMLEMIHCHWRRQEICKVRCRGVPTVDMKNL 293
Query: 240 HDSLERKTGGLVVWRSGSKIILYRGADY------KYPYFL 273
LE K+GG V+ R G + LYRG Y +YP L
Sbjct: 294 CYHLEEKSGGKVIHRVGGVVFLYRGRHYDPKTRPRYPLML 333
Score = 44.3 bits (103), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 48/99 (48%), Gaps = 4/99 (4%)
Query: 588 EVDKEGITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVENMHLHWKHRELVKIISKQRKI 647
EV E +T E L K + L +GR G+ +E +H HW+ +E+ K+ +
Sbjct: 228 EVLGEPLTPSEVRALVKPHISHNRQLNIGRDGLTHNMLEMIHCHWRRQEICKVRCRGVPT 287
Query: 648 EAALQEARTLEVESGGILVAVERVNKGYAIILYRGKNYE 686
LE +SGG + + RV G + LYRG++Y+
Sbjct: 288 VDMKNLCYHLEEKSGGKV--IHRV--GGVVFLYRGRHYD 322
>gi|115475027|ref|NP_001061110.1| Os08g0174900 [Oryza sativa Japonica Group]
gi|75133775|sp|Q6Z4U2.1|CAF1M_ORYSJ RecName: Full=CRS2-associated factor 1, mitochondrial; Flags:
Precursor
gi|40253285|dbj|BAD05220.1| putative CRS2-associated factor 1 [Oryza sativa Japonica Group]
gi|40253602|dbj|BAD05547.1| putative CRS2-associated factor 1 [Oryza sativa Japonica Group]
gi|113623079|dbj|BAF23024.1| Os08g0174900 [Oryza sativa Japonica Group]
gi|125560323|gb|EAZ05771.1| hypothetical protein OsI_28005 [Oryza sativa Indica Group]
Length = 428
Score = 67.8 bits (164), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 47/72 (65%)
Query: 196 RKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRTHDSLERKTGGLVVWRS 255
+K++ +G+ G+T ++N IH W++ E V++ C + ++M+ LE KTGGL++ R
Sbjct: 175 KKQINLGRDGLTHNMLNDIHNHWKNDEAVRVKCLGVPTVDMQNVCHQLEDKTGGLIIHRH 234
Query: 256 GSKIILYRGADY 267
G ++ILYRG Y
Sbjct: 235 GGQLILYRGRHY 246
Score = 40.4 bits (93), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
Query: 608 RMKAFLLMGRRGVFDGTVENMHLHWKHRELVKIISKQRKIEAALQEARTLEVESGGILVA 667
R K + +GR G+ + ++H HWK+ E V++ LE ++GG+++
Sbjct: 173 RTKKQINLGRDGLTHNMLNDIHNHWKNDEAVRVKCLGVPTVDMQNVCHQLEDKTGGLIIH 232
Query: 668 VERVNKGYAIILYRGKNY 685
G +ILYRG++Y
Sbjct: 233 ----RHGGQLILYRGRHY 246
>gi|357132021|ref|XP_003567631.1| PREDICTED: CRS2-associated factor 2, chloroplastic-like
[Brachypodium distachyon]
Length = 607
Score = 67.4 bits (163), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 53/100 (53%), Gaps = 6/100 (6%)
Query: 180 LSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRT 239
L+ E+R L + ++L IG+ G+T ++ IH WR E+ K+ C + ++MK
Sbjct: 233 LTPAEVRALVKPHMSHNRQLNIGRDGLTHNMLEMIHCHWRRQEICKVRCRGVPTVDMKNL 292
Query: 240 HDSLERKTGGLVVWRSGSKIILYRGADY------KYPYFL 273
LE K+GG V+ R G + LYRG +Y +YP L
Sbjct: 293 CYHLEEKSGGKVIHRVGGVVFLYRGRNYNPRTRPRYPLML 332
Score = 47.4 bits (111), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 86/192 (44%), Gaps = 28/192 (14%)
Query: 588 EVDKEGITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVENMHLHWKHRELVKIISKQRKI 647
EV E +T E L K + L +GR G+ +E +H HW+ +E+ K+ +
Sbjct: 227 EVLGEPLTPAEVRALVKPHMSHNRQLNIGRDGLTHNMLEMIHCHWRRQEICKVRCRGVPT 286
Query: 648 EAALQEARTLEVESGGILVAVERVNKGYAIILYRGKNYE------------RPAC-LRPK 694
LE +SGG + + RV G + LYRG+NY +PA + PK
Sbjct: 287 VDMKNLCYHLEEKSGGKV--IHRV--GGVVFLYRGRNYNPRTRPRYPLMLWKPATPVYPK 342
Query: 695 TLLTKREAMKRSLEAQRR---QSLKLHVLELTRNIEKLKLQLVKDK----EANSLETID- 746
+ E + A+ R Q+L L + +L +N + L LVKD E N L I+
Sbjct: 343 LIQLAPEGLTIEEAAEMRIRGQNL-LPIFKLAKN--GIYLNLVKDVRDAFEGNDLVKINC 399
Query: 747 ESILPLVKEEIG 758
E + P ++IG
Sbjct: 400 EGLEPSDYKKIG 411
>gi|125602364|gb|EAZ41689.1| hypothetical protein OsJ_26223 [Oryza sativa Japonica Group]
Length = 615
Score = 67.4 bits (163), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 47/72 (65%)
Query: 196 RKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRTHDSLERKTGGLVVWRS 255
+K++ +G+ G+T ++N IH W++ E V++ C + ++M+ LE KTGGL++ R
Sbjct: 151 KKQINLGRDGLTHNMLNDIHNHWKNDEAVRVKCLGVPTVDMQNVCHQLEDKTGGLIIHRH 210
Query: 256 GSKIILYRGADY 267
G ++ILYRG Y
Sbjct: 211 GGQLILYRGRHY 222
Score = 63.2 bits (152), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 42/66 (63%)
Query: 202 GKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRTHDSLERKTGGLVVWRSGSKIIL 261
G+ G+T ++N IH W++ E V++ C + ++M+ LE KTGGL++ R G ++IL
Sbjct: 368 GRDGLTHNMLNDIHNHWKNDEAVRVKCLGVPTVDMQNVCHQLEDKTGGLIIHRHGGQLIL 427
Query: 262 YRGADY 267
YRG Y
Sbjct: 428 YRGRHY 433
Score = 48.1 bits (113), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 72/312 (23%), Positives = 125/312 (40%), Gaps = 38/312 (12%)
Query: 399 LTNDEMTTLRRLGRPLPCHFALGRNRNLQGLAAAIVKLWEKCEIAKIAVKRGAQNTNSEM 458
LT +E +R+ G +P L +N L + + E+ +I K G ++
Sbjct: 253 LTVEETKEMRKKGLYVPVLTKLAKNGYYASLVPMVRDAFLTDELVRIDSK-GLPKSDYRK 311
Query: 459 MAQELKRLTGGTLLSRDREFIVFYRGKDF--------LPPAASSAIEERRKHEFSTSNDS 510
+ +L+ L ++S D+E I+ +RGKD+ + S EE E D
Sbjct: 312 IGVKLRDLVPCIIVSFDKEQIIVWRGKDYNGTIQDNTQKTSVSVLEEESAGAESENGRDG 371
Query: 511 KEEPELGNRHDNSGDNTQDEFGC----TNDQKSTMHSEQKERRSAEVAIRRTNIRLSRVL 566
L + H++ ++ C T D ++ H Q E ++ + I R +L
Sbjct: 372 LTHNMLNDIHNHWKNDEAVRVKCLGVPTVDMQNVCH--QLEDKTGGLIIHRHGGQLILYR 429
Query: 567 EKKAEAEK-------LLAELEEERPEQYEVDKEGITEEERYMLRKVGLRMKAFLLMGRRG 619
+ +K L E P + EG+T EE +RK GL + + + G
Sbjct: 430 GRHYNPKKRPVIPLMLWKPAEPVYPRLIKTTIEGLTVEETKEMRKKGLYVPVLTKLAKNG 489
Query: 620 VFDGTVENMHLHWKHRELVKIISK------QRKIEAALQEARTLEVESGGILVAVERVNK 673
+ V + + ELV+I SK RKI L++ I+V+ ++
Sbjct: 490 YYASLVPMVRDAFLTDELVRIDSKGLPKSDYRKIGVKLRDLVPC------IIVSFDKEQ- 542
Query: 674 GYAIILYRGKNY 685
II++RGK+Y
Sbjct: 543 ---IIVWRGKDY 551
Score = 39.7 bits (91), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
Query: 608 RMKAFLLMGRRGVFDGTVENMHLHWKHRELVKIISKQRKIEAALQEARTLEVESGGILVA 667
R K + +GR G+ + ++H HWK+ E V++ LE ++GG+++
Sbjct: 149 RTKKQINLGRDGLTHNMLNDIHNHWKNDEAVRVKCLGVPTVDMQNVCHQLEDKTGGLIIH 208
Query: 668 VERVNKGYAIILYRGKNY 685
G +ILYRG++Y
Sbjct: 209 ----RHGGQLILYRGRHY 222
>gi|357520913|ref|XP_003630745.1| CRS2-associated factor [Medicago truncatula]
gi|355524767|gb|AET05221.1| CRS2-associated factor [Medicago truncatula]
Length = 698
Score = 67.0 bits (162), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 49/90 (54%)
Query: 180 LSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRT 239
L+ +E+ L + ++L +G+ G +++ IH W+ V KI C +C ++M
Sbjct: 172 LTKEEINELVRSTLKSSRQLNLGRDGFIHNMLDNIHAHWKRRRVCKIKCIGVCTVDMDNV 231
Query: 240 HDSLERKTGGLVVWRSGSKIILYRGADYKY 269
LE KTGG V++R G I L+RG +Y +
Sbjct: 232 CQQLEEKTGGKVIYRRGGVIYLFRGRNYNH 261
Score = 49.7 bits (117), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 48/98 (48%), Gaps = 4/98 (4%)
Query: 588 EVDKEGITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVENMHLHWKHRELVKIISKQRKI 647
EV E +T+EE L + L+ L +GR G ++N+H HWK R + KI
Sbjct: 166 EVLGEPLTKEEINELVRSTLKSSRQLNLGRDGFIHNMLDNIHAHWKRRRVCKIKCIGVCT 225
Query: 648 EAALQEARTLEVESGGILVAVERVNKGYAIILYRGKNY 685
+ LE ++GG ++ +G I L+RG+NY
Sbjct: 226 VDMDNVCQQLEEKTGGKVI----YRRGGVIYLFRGRNY 259
Score = 47.8 bits (112), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 56/106 (52%), Gaps = 5/106 (4%)
Query: 382 PGYRRPFRLLPYGVQPKLTNDEMTTLRRLGRPLPCHFALGRNRNLQGLAAAIVKLWEKCE 441
P Y R + +P G LT +E T +R+ GR L LG+N L + + +E+CE
Sbjct: 277 PVYPRLIQQVPEG----LTLEEATEMRQKGRTLTPICKLGKNGVYYNLVNNVREAFEECE 332
Query: 442 IAKIAVKRGAQNTNSEMMAQELKRLTGGTLLSRDREFIVFYRGKDF 487
+ ++ + G ++ + +L+ L TLLS + E I+ +RG+++
Sbjct: 333 LVRVNCQ-GLNKSDYRKIGAKLRDLVPCTLLSYENEHILMWRGRNW 377
Score = 47.0 bits (110), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 58/121 (47%), Gaps = 2/121 (1%)
Query: 180 LSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRT 239
L+ +E +R G L K+GK G+ +VN + E + E+V++ C+ L + + ++
Sbjct: 290 LTLEEATEMRQKGRTLTPICKLGKNGVYYNLVNNVREAFEECELVRVNCQGLNKSDYRKI 349
Query: 240 HDSLERKTGGLVVWRSGSKIILYRGADYK--YPYFLADESSTDGASSDDLPNQLVDDEGL 297
L ++ I+++RG ++K +P + D A +D+ ++ + E L
Sbjct: 350 GAKLRDLVPCTLLSYENEHILMWRGRNWKSSFPDLVEDFKEATKADADNKNDKTLQSEAL 409
Query: 298 D 298
D
Sbjct: 410 D 410
>gi|242078343|ref|XP_002443940.1| hypothetical protein SORBIDRAFT_07g004760 [Sorghum bicolor]
gi|241940290|gb|EES13435.1| hypothetical protein SORBIDRAFT_07g004760 [Sorghum bicolor]
Length = 437
Score = 66.6 bits (161), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 46/72 (63%)
Query: 196 RKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRTHDSLERKTGGLVVWRS 255
++++ +G+ G+T ++N IH W+ E V+I C + ++M+ LE KTGG+++ R
Sbjct: 182 KRQINLGRDGLTHNMLNDIHNNWKTCEAVRIKCLGVPTVDMQNVCHQLEDKTGGVIIHRH 241
Query: 256 GSKIILYRGADY 267
GS +ILYRG Y
Sbjct: 242 GSLLILYRGRHY 253
>gi|317106625|dbj|BAJ53131.1| JHL05D22.2 [Jatropha curcas]
Length = 415
Score = 66.2 bits (160), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 61/108 (56%), Gaps = 6/108 (5%)
Query: 161 KNSKMNEKEKEVP-TLAELKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWR 219
K M EK + P T AE K+ + +R +T ++++ +G+ G+T ++N IH W+
Sbjct: 149 KRKLMREKIQGDPLTNAERKILVAQCQRNKT-----KRQINLGRDGLTHNMLNDIHNHWK 203
Query: 220 HAEVVKIVCEDLCRLNMKRTHDSLERKTGGLVVWRSGSKIILYRGADY 267
HAE V+I C + ++MK LE KT G ++ R ++LYRG +Y
Sbjct: 204 HAEAVRIKCLGVPTVDMKNVCSQLEDKTFGKIIHRHCGSLVLYRGRNY 251
Score = 40.8 bits (94), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 49/101 (48%), Gaps = 1/101 (0%)
Query: 399 LTNDEMTTLRRLGRPLPCHFALGRNRNLQGLAAAIVKLWEKCEIAKIAVKRGAQNTNSEM 458
L+ DE +R+ G +P L +N L + + E+ +I + G + ++ +
Sbjct: 282 LSIDETKEMRKRGLAVPALTKLAKNGYYASLVPMVRDAFLTNELVRIDCQ-GLEKSDYKK 340
Query: 459 MAQELKRLTGGTLLSRDREFIVFYRGKDFLPPAASSAIEER 499
+ +L+ L L++ ++E IV +RGKD+ PP +R
Sbjct: 341 IGCKLRDLVPCILVTFEKEQIVVWRGKDYKPPEDGELFADR 381
Score = 40.4 bits (93), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 45/91 (49%)
Query: 180 LSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRT 239
LS E + +R G+ + K+ K G +V + + + E+V+I C+ L + + K+
Sbjct: 282 LSIDETKEMRKRGLAVPALTKLAKNGYYASLVPMVRDAFLTNELVRIDCQGLEKSDYKKI 341
Query: 240 HDSLERKTGGLVVWRSGSKIILYRGADYKYP 270
L ++V +I+++RG DYK P
Sbjct: 342 GCKLRDLVPCILVTFEKEQIVVWRGKDYKPP 372
>gi|356495236|ref|XP_003516485.1| PREDICTED: CRS2-associated factor 1, chloroplastic-like [Glycine
max]
Length = 705
Score = 66.2 bits (160), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 46/90 (51%)
Query: 180 LSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRT 239
L+ E+ RL ++L IG+ G+T ++ IH W KI C +C ++M
Sbjct: 239 LTKDEINRLIKATEKSSRQLNIGRDGLTHNMLENIHTYWMRRSACKIKCRGVCTVDMDNV 298
Query: 240 HDSLERKTGGLVVWRSGSKIILYRGADYKY 269
LE +TGG +++R + L+RG +Y Y
Sbjct: 299 CQQLEERTGGKIIYRQAGTVYLFRGKNYNY 328
Score = 43.9 bits (102), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 55/108 (50%), Gaps = 5/108 (4%)
Query: 382 PGYRRPFRLLPYGVQPKLTNDEMTTLRRLGRPLPCHFALGRNRNLQGLAAAIVKLWEKCE 441
P Y R + +P G LT ++ T +R+ GR L LG+N L I + +E+CE
Sbjct: 344 PVYPRLIKRVPEG----LTLEKATEMRQKGRDLMPICKLGKNGVYWDLVTNIREAFEECE 399
Query: 442 IAKIAVKRGAQNTNSEMMAQELKRLTGGTLLSRDREFIVFYRGKDFLP 489
+ +I + ++ + +LK L LLS + + I+ +RG+++ P
Sbjct: 400 LVRINCQE-LNTSDYRRIGAKLKDLVPCALLSFENDHILMWRGQNWRP 446
Score = 41.6 bits (96), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 45/98 (45%), Gaps = 4/98 (4%)
Query: 588 EVDKEGITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVENMHLHWKHRELVKIISKQRKI 647
EV E +T++E L K + L +GR G+ +EN+H +W R KI +
Sbjct: 233 EVLGEPLTKDEINRLIKATEKSSRQLNIGRDGLTHNMLENIHTYWMRRSACKIKCRGVCT 292
Query: 648 EAALQEARTLEVESGGILVAVERVNKGYAIILYRGKNY 685
+ LE +GG ++ + + L+RGKNY
Sbjct: 293 VDMDNVCQQLEERTGGKII----YRQAGTVYLFRGKNY 326
>gi|242052829|ref|XP_002455560.1| hypothetical protein SORBIDRAFT_03g013160 [Sorghum bicolor]
gi|241927535|gb|EES00680.1| hypothetical protein SORBIDRAFT_03g013160 [Sorghum bicolor]
Length = 614
Score = 66.2 bits (160), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 63/125 (50%), Gaps = 8/125 (6%)
Query: 155 RQKWLAKNSKMNEKEKEVPTLAELKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGI 214
RQ LA+ S + + +E L E L+ E+R L I ++L IG+ G+T ++ I
Sbjct: 213 RQMDLARVSPGDGRSREE-VLGE-PLTPSEVRALVKPHISHNRQLNIGRDGLTHNMLEMI 270
Query: 215 HERWRHAEVVKIVCEDLCRLNMKRTHDSLERKTGGLVVWRSGSKIILYRGADY------K 268
H WR E+ K+ C + ++MK LE K+GG V+ R G + +YRG Y
Sbjct: 271 HCHWRRQEICKVRCRGVPTVDMKNLCYHLEEKSGGKVIHRVGGVVFVYRGRHYDPKTRPH 330
Query: 269 YPYFL 273
YP L
Sbjct: 331 YPLML 335
Score = 45.8 bits (107), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 93/210 (44%), Gaps = 38/210 (18%)
Query: 588 EVDKEGITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVENMHLHWKHRELVKIISKQRKI 647
EV E +T E L K + L +GR G+ +E +H HW+ +E+ K+ +
Sbjct: 230 EVLGEPLTPSEVRALVKPHISHNRQLNIGRDGLTHNMLEMIHCHWRRQEICKVRCRGVPT 289
Query: 648 EAALQEARTLEVESGGILVAVERVNKGYAIILYRGKNYE------------RPAC-LRPK 694
LE +SGG + + RV G + +YRG++Y+ +PA + PK
Sbjct: 290 VDMKNLCYHLEEKSGGKV--IHRV--GGVVFVYRGRHYDPKTRPHYPLMLWKPATPVYPK 345
Query: 695 TL------LTKREAMKRSLEAQRRQSLKLHVLELTRNIEKLKLQLVKDK----EANSLET 744
+ LTK EA E +R+ L + +L +N + + LVKD E N L
Sbjct: 346 LIKEVPEGLTKEEAD----EMRRKGRDLLPICKLAKN--GIYITLVKDVRDAFEGNDLVK 399
Query: 745 ID-ESILPLVKEEIG----DMQPAECMRSD 769
ID E + P ++IG D+ P + D
Sbjct: 400 IDCEGLNPSDYKKIGAKLRDLVPCVLLSFD 429
>gi|168040806|ref|XP_001772884.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162675795|gb|EDQ62286.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 463
Score = 65.9 bits (159), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 51/90 (56%)
Query: 180 LSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRT 239
L+ E+R L T +++ +G+ G+T ++N +HE W+ V K+ C+ + ++M
Sbjct: 91 LTSAEVRELVTKARKEPRQINLGRDGLTHNMLNLVHEHWKRRRVCKVKCKGVPTVDMDNV 150
Query: 240 HDSLERKTGGLVVWRSGSKIILYRGADYKY 269
LE KTGG ++ R G + L+RG +Y Y
Sbjct: 151 CRVLEEKTGGKIILRQGGAVYLFRGRNYNY 180
Score = 43.1 bits (100), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
Query: 615 MGRRGVFDGTVENMHLHWKHRELVKIISKQRKIEAALQEARTLEVESGGILVAVERVNKG 674
+GR G+ + +H HWK R + K+ K R LE ++GG ++ + +G
Sbjct: 112 LGRDGLTHNMLNLVHEHWKRRRVCKVKCKGVPTVDMDNVCRVLEEKTGGKII----LRQG 167
Query: 675 YAIILYRGKNY 685
A+ L+RG+NY
Sbjct: 168 GAVYLFRGRNY 178
Score = 41.2 bits (95), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 52/99 (52%), Gaps = 5/99 (5%)
Query: 399 LTNDEMTTLRRLGRPLP--CHFALGRNRNLQGLAAAIVKLWEKCEIAKIAVKRGAQNTNS 456
LT +E LR+LGR LP CH LG+N L + ++ ++ K+ K ++
Sbjct: 209 LTIEEANNLRKLGRELPPVCH--LGKNGVYVNLVRDVRNAFKVDDLVKVDCK-NMNPSDY 265
Query: 457 EMMAQELKRLTGGTLLSRDREFIVFYRGKDFLPPAASSA 495
+ + +LK L LLS +RE I+ +RG + L +++S
Sbjct: 266 KKIGAKLKDLVPCVLLSFERESILMWRGPESLTESSNSV 304
>gi|255541412|ref|XP_002511770.1| conserved hypothetical protein [Ricinus communis]
gi|223548950|gb|EEF50439.1| conserved hypothetical protein [Ricinus communis]
Length = 411
Score = 65.9 bits (159), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 55/94 (58%), Gaps = 5/94 (5%)
Query: 174 TLAELKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCR 233
T AE K+ + +R +T +K++ +G+ G+T ++N IH W+HAE V+I C +
Sbjct: 158 TNAERKILVESCQRHKT-----KKQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPT 212
Query: 234 LNMKRTHDSLERKTGGLVVWRSGSKIILYRGADY 267
++MK LE KT G ++ R ++LYRG +Y
Sbjct: 213 VDMKNVCTQLEDKTFGKIIHRHCGLLVLYRGRNY 246
Score = 43.9 bits (102), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 52/107 (48%), Gaps = 2/107 (1%)
Query: 180 LSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRT 239
LS +E + +R G+ L K+ K G +V + + + E+V+I C+ L + + K+
Sbjct: 277 LSIEETKEMRKKGLALPALTKLAKNGYYASLVPMVRDAFLVNELVRIDCQGLPKSDYKKI 336
Query: 240 HDSLERKTGGLVVWRSGSKIILYRGADYKYPYFLADESSTDGASSDD 286
L ++V +I+++RG DYK P + +S D DD
Sbjct: 337 GCKLRDLVPCILVTFEKEQIVVWRGKDYKPPEY--GQSFVDRECFDD 381
Score = 41.2 bits (95), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 32/139 (23%), Positives = 66/139 (47%), Gaps = 4/139 (2%)
Query: 399 LTNDEMTTLRRLGRPLPCHFALGRNRNLQGLAAAIVKLWEKCEIAKIAVKRGAQNTNSEM 458
L+ +E +R+ G LP L +N L + + E+ +I + G ++ +
Sbjct: 277 LSIEETKEMRKKGLALPALTKLAKNGYYASLVPMVRDAFLVNELVRIDCQ-GLPKSDYKK 335
Query: 459 MAQELKRLTGGTLLSRDREFIVFYRGKDFLPPAASSAIEERRKHEFSTSNDSKEEPELGN 518
+ +L+ L L++ ++E IV +RGKD+ PP + +R + SN+ + +
Sbjct: 336 IGCKLRDLVPCILVTFEKEQIVVWRGKDYKPPEYGQSFVDRECFDDPESNEEYSKESCSS 395
Query: 519 RHDNSGDNTQDEFGCTNDQ 537
D S D+ QD + ++++
Sbjct: 396 --DESNDH-QDFYSSSDEE 411
>gi|242080803|ref|XP_002445170.1| hypothetical protein SORBIDRAFT_07g005220 [Sorghum bicolor]
gi|241941520|gb|EES14665.1| hypothetical protein SORBIDRAFT_07g005220 [Sorghum bicolor]
Length = 353
Score = 65.5 bits (158), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 46/71 (64%)
Query: 197 KKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRTHDSLERKTGGLVVWRSG 256
+++ +GK G+T +++ IH W+ AE V+I C + L+M LE KTGG V++RS
Sbjct: 164 RQINLGKGGVTHNMLDDIHNHWKRAEAVRIKCLGVPTLDMDNICFHLEDKTGGKVIYRSI 223
Query: 257 SKIILYRGADY 267
+ IILYRG +Y
Sbjct: 224 NIIILYRGRNY 234
>gi|449432211|ref|XP_004133893.1| PREDICTED: CRS2-associated factor 1, mitochondrial-like [Cucumis
sativus]
gi|449480099|ref|XP_004155799.1| PREDICTED: LOW QUALITY PROTEIN: CRS2-associated factor 1,
mitochondrial-like [Cucumis sativus]
Length = 392
Score = 65.5 bits (158), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 45/72 (62%)
Query: 196 RKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRTHDSLERKTGGLVVWRS 255
++++ +G+ G+T ++N IH WRH E V+I C + ++MK LE KT G ++ R
Sbjct: 171 KRQINLGRDGLTHNMLNDIHNHWRHGEAVRIKCLGVPTVDMKNVCTQLEDKTFGKIIHRH 230
Query: 256 GSKIILYRGADY 267
G ++LYRG +Y
Sbjct: 231 GGFLVLYRGRNY 242
Score = 44.7 bits (104), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 399 LTNDEMTTLRRLGRPLPCHFALGRNRNLQGLAAAIVKLWEKCEIAKIAVKRGAQNTNSEM 458
L+ DE +R+ G +P L +N L + + CE+ +I K G + ++ +
Sbjct: 273 LSIDETKEMRKKGLAVPALTKLAKNGYYGSLVPMVRDAFLSCELVRIDCK-GLERSDYKK 331
Query: 459 MAQELKRLTGGTLLSRDREFIVFYRGKDFLP 489
+ +L+ L L++ D+E IV +RGKD+ P
Sbjct: 332 IGCKLRDLVPCILVTFDKEQIVVWRGKDYQP 362
>gi|218200589|gb|EEC83016.1| hypothetical protein OsI_28075 [Oryza sativa Indica Group]
Length = 365
Score = 65.1 bits (157), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 46/71 (64%)
Query: 197 KKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRTHDSLERKTGGLVVWRSG 256
+++ +GK G+T +++ IH W+ AE V+I C + L+M LE KTGG V++R+
Sbjct: 163 RQINLGKGGVTHNMIDDIHNHWKRAEAVRIKCLGVPTLDMDNICFHLEDKTGGKVIYRNI 222
Query: 257 SKIILYRGADY 267
+ +ILYRG +Y
Sbjct: 223 NILILYRGRNY 233
>gi|115475115|ref|NP_001061154.1| Os08g0188000 [Oryza sativa Japonica Group]
gi|113623123|dbj|BAF23068.1| Os08g0188000, partial [Oryza sativa Japonica Group]
Length = 361
Score = 65.1 bits (157), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 46/71 (64%)
Query: 197 KKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRTHDSLERKTGGLVVWRSG 256
+++ +GK G+T +++ IH W+ AE V+I C + L+M LE KTGG V++R+
Sbjct: 159 RQINLGKGGVTHNMIDDIHNHWKRAEAVRIKCLGVPTLDMDNICFHLEDKTGGKVIYRNI 218
Query: 257 SKIILYRGADY 267
+ +ILYRG +Y
Sbjct: 219 NILILYRGRNY 229
>gi|143955290|sp|Q0J7J7.2|CAF2M_ORYSJ RecName: Full=CRS2-associated factor 2, mitochondrial; Flags:
Precursor
gi|222640037|gb|EEE68169.1| hypothetical protein OsJ_26288 [Oryza sativa Japonica Group]
Length = 366
Score = 65.1 bits (157), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 46/71 (64%)
Query: 197 KKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRTHDSLERKTGGLVVWRSG 256
+++ +GK G+T +++ IH W+ AE V+I C + L+M LE KTGG V++R+
Sbjct: 164 RQINLGKGGVTHNMIDDIHNHWKRAEAVRIKCLGVPTLDMDNICFHLEDKTGGKVIYRNI 223
Query: 257 SKIILYRGADY 267
+ +ILYRG +Y
Sbjct: 224 NILILYRGRNY 234
>gi|413921149|gb|AFW61081.1| hypothetical protein ZEAMMB73_173916 [Zea mays]
Length = 291
Score = 64.7 bits (156), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 45/71 (63%)
Query: 197 KKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRTHDSLERKTGGLVVWRSG 256
+++ +GK G+T +++ IH W+ AE V+I C + L+M LE KTGG VV RS
Sbjct: 160 RQINLGKGGVTHNMLDDIHNHWKRAEAVRIKCLGVPTLDMDNICFHLEDKTGGKVVSRSI 219
Query: 257 SKIILYRGADY 267
+ IILYRG +Y
Sbjct: 220 NIIILYRGRNY 230
>gi|326525845|dbj|BAJ93099.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 607
Score = 64.7 bits (156), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 51/100 (51%), Gaps = 6/100 (6%)
Query: 180 LSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRT 239
L+ E R L + ++L IG+ G+T ++ IH WR EV K+ C + ++M
Sbjct: 232 LTSAETRELVKPHMSHNRQLNIGRDGLTHNMLEMIHCHWRRQEVCKVRCRGVPTVDMNNL 291
Query: 240 HDSLERKTGGLVVWRSGSKIILYRGADY------KYPYFL 273
LE K+GG V+ R G + LYRG +Y +YP L
Sbjct: 292 CYHLEEKSGGKVIKRVGGVVFLYRGRNYNPRTRPRYPLML 331
Score = 53.1 bits (126), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 59/217 (27%), Positives = 98/217 (45%), Gaps = 30/217 (13%)
Query: 588 EVDKEGITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVENMHLHWKHRELVKIISKQRKI 647
EV E +T E L K + L +GR G+ +E +H HW+ +E+ K+ +
Sbjct: 226 EVLGEPLTSAETRELVKPHMSHNRQLNIGRDGLTHNMLEMIHCHWRRQEVCKVRCRGVPT 285
Query: 648 EAALQEARTLEVESGGILVAVERVNKGYAIILYRGKNYE------------RPAC-LRPK 694
LE +SGG + ++RV G + LYRG+NY +PA + PK
Sbjct: 286 VDMNNLCYHLEEKSGGKV--IKRV--GGVVFLYRGRNYNPRTRPRYPLMLWKPATPVYPK 341
Query: 695 TLLTKREAM--KRSLEAQRRQSLKLHVLELTRNIEKLKLQLVKDK----EANSLETID-E 747
+ E + + + E +RR + L +L+L +N + + LVKD E N L ID +
Sbjct: 342 LIQQAPEGLTVEEAAEMRRRGQILLPILKLAKN--GIYINLVKDVQDAFEGNDLVKIDCK 399
Query: 748 SILPLVKEEIG----DMQPAECMRSDTSHEVNVQARG 780
+ P ++IG D+ P + D + + +G
Sbjct: 400 GLEPSDYKKIGAKLRDLVPCVLLSFDKEQILIYRGKG 436
>gi|226508160|ref|NP_001140244.1| uncharacterized protein LOC100272285 [Zea mays]
gi|194698680|gb|ACF83424.1| unknown [Zea mays]
gi|413917198|gb|AFW57130.1| hypothetical protein ZEAMMB73_054545 [Zea mays]
Length = 424
Score = 64.7 bits (156), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 45/72 (62%)
Query: 196 RKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRTHDSLERKTGGLVVWRS 255
++++ +G+ G T +++ +H W+ E V+I C + ++M+ LE KTGGL++ R
Sbjct: 183 KRQINLGRDGFTHNMLSDVHNNWKTCEAVRIKCLGVPTVDMQNVCHQLEDKTGGLIIHRH 242
Query: 256 GSKIILYRGADY 267
GS +ILYRG Y
Sbjct: 243 GSLLILYRGRHY 254
>gi|226530577|ref|NP_001147995.1| LOC100281604 [Zea mays]
gi|195615022|gb|ACG29341.1| CRS2-associated factor 1 [Zea mays]
Length = 362
Score = 64.3 bits (155), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 45/71 (63%)
Query: 197 KKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRTHDSLERKTGGLVVWRSG 256
+++ +GK G+T +++ IH W+ AE V+I C + L+M LE KTGG VV RS
Sbjct: 160 RQINLGKGGVTHNMLDDIHNHWKRAEAVRIKCLGVPTLDMDNICFHLEDKTGGKVVSRSI 219
Query: 257 SKIILYRGADY 267
+ IILYRG +Y
Sbjct: 220 NIIILYRGRNY 230
>gi|238014734|gb|ACR38402.1| unknown [Zea mays]
gi|413921148|gb|AFW61080.1| CRS2-associated factor 1 [Zea mays]
Length = 362
Score = 64.3 bits (155), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 45/71 (63%)
Query: 197 KKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRTHDSLERKTGGLVVWRSG 256
+++ +GK G+T +++ IH W+ AE V+I C + L+M LE KTGG VV RS
Sbjct: 160 RQINLGKGGVTHNMLDDIHNHWKRAEAVRIKCLGVPTLDMDNICFHLEDKTGGKVVSRSI 219
Query: 257 SKIILYRGADY 267
+ IILYRG +Y
Sbjct: 220 NIIILYRGRNY 230
>gi|224124340|ref|XP_002319307.1| predicted protein [Populus trichocarpa]
gi|222857683|gb|EEE95230.1| predicted protein [Populus trichocarpa]
Length = 354
Score = 63.9 bits (154), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 46/71 (64%)
Query: 197 KKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRTHDSLERKTGGLVVWRSG 256
+++ +GK G+T +++ IH W+ AE V+I C + L+M LE K+GG VV+R+
Sbjct: 158 RQINLGKGGVTHNMLDDIHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEDKSGGKVVYRNI 217
Query: 257 SKIILYRGADY 267
+ ++LYRG +Y
Sbjct: 218 NILLLYRGRNY 228
>gi|225461009|ref|XP_002278505.1| PREDICTED: CRS2-associated factor 2, mitochondrial-like [Vitis
vinifera]
Length = 452
Score = 63.9 bits (154), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 46/71 (64%)
Query: 197 KKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRTHDSLERKTGGLVVWRSG 256
+++ +GK G+T +++ IH W+ AE V+I C + L+M+ LE K GG +++R+
Sbjct: 167 RQINLGKGGVTHNMLDDIHNHWKRAEAVRIKCLGVPTLDMENVCFHLEDKCGGKIIYRNI 226
Query: 257 SKIILYRGADY 267
+ I+LYRG +Y
Sbjct: 227 NIILLYRGRNY 237
>gi|356560247|ref|XP_003548405.1| PREDICTED: CRS2-associated factor 1, mitochondrial-like [Glycine
max]
Length = 396
Score = 63.9 bits (154), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 43/71 (60%)
Query: 197 KKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRTHDSLERKTGGLVVWRSG 256
+ + +G+ G+T ++N IH W+ AE V+I C + ++M LE KT G V++R G
Sbjct: 178 RHVNLGRDGLTHNMLNVIHNHWKFAEAVRIKCMGVPTMDMNNICTQLEDKTFGKVIFRHG 237
Query: 257 SKIILYRGADY 267
+ILYRG +Y
Sbjct: 238 GTLILYRGRNY 248
Score = 53.1 bits (126), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 52/102 (50%), Gaps = 3/102 (2%)
Query: 180 LSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRT 239
LS KE + +R G+ + K+ K G +V + + + E+V+I CE L R + K+
Sbjct: 279 LSIKETKEMRKRGLSVPALTKLAKNGYYAFLVPMVRDAFLSCELVRIDCEGLERKDYKKI 338
Query: 240 HDSLERKTGGLVVWRSGSKIILYRGADYKYP---YFLADESS 278
L ++V +I+++RG DYK+P YFL D S
Sbjct: 339 GCKLRDMVPCILVTFENEQIVVWRGKDYKHPKDGYFLKDRES 380
>gi|357144748|ref|XP_003573400.1| PREDICTED: CRS2-associated factor 2, mitochondrial-like
[Brachypodium distachyon]
Length = 365
Score = 63.5 bits (153), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 45/71 (63%)
Query: 197 KKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRTHDSLERKTGGLVVWRSG 256
+++ +GK G+T +++ IH W+ AE V+I C + L+M LE KTGG ++ RS
Sbjct: 163 RQINLGKGGVTHNMLDDIHNHWKRAEAVRIKCLGVATLDMDNICFHLEDKTGGKIIHRSI 222
Query: 257 SKIILYRGADY 267
+ +ILYRG +Y
Sbjct: 223 NILILYRGRNY 233
>gi|194704400|gb|ACF86284.1| unknown [Zea mays]
Length = 130
Score = 63.5 bits (153), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/56 (57%), Positives = 43/56 (76%)
Query: 561 RLSRVLEKKAEAEKLLAELEEERPEQYEVDKEGITEEERYMLRKVGLRMKAFLLMG 616
RLS+ + +KA+AEKL+ ELE+ P +E I+E+ERYMLRKVGL+MK FLL+G
Sbjct: 44 RLSQAIAEKAKAEKLIEELEKASPLSKAEVRETISEDERYMLRKVGLKMKQFLLLG 99
>gi|297737420|emb|CBI26621.3| unnamed protein product [Vitis vinifera]
Length = 343
Score = 63.2 bits (152), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 46/71 (64%)
Query: 197 KKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRTHDSLERKTGGLVVWRSG 256
+++ +GK G+T +++ IH W+ AE V+I C + L+M+ LE K GG +++R+
Sbjct: 148 RQINLGKGGVTHNMLDDIHNHWKRAEAVRIKCLGVPTLDMENVCFHLEDKCGGKIIYRNI 207
Query: 257 SKIILYRGADY 267
+ I+LYRG +Y
Sbjct: 208 NIILLYRGRNY 218
>gi|359473240|ref|XP_003631275.1| PREDICTED: LOW QUALITY PROTEIN: CRS2-associated factor 2,
chloroplastic-like [Vitis vinifera]
Length = 560
Score = 63.2 bits (152), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 49/90 (54%)
Query: 180 LSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRT 239
LS E+R L + +++ +G+ G+T ++ IH W+ V K+ C+ + ++M
Sbjct: 196 LSKAEIRMLVKPYLSHNRQVNLGRDGLTHNMLELIHSHWKRQRVCKVWCKGVPTIDMDNV 255
Query: 240 HDSLERKTGGLVVWRSGSKIILYRGADYKY 269
LE KTGG ++ R G + L+RG +Y Y
Sbjct: 256 CHHLEEKTGGKIIHRVGGVVYLFRGRNYNY 285
Score = 42.0 bits (97), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 79/177 (44%), Gaps = 23/177 (12%)
Query: 588 EVDKEGITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVENMHLHWKHRELVKIISKQRKI 647
E+ E +++ E ML K L + +GR G+ +E +H HWK + + K+ K
Sbjct: 190 EILGEPLSKAEIRMLVKPYLSHNRQVNLGRDGLTHNMLELIHSHWKRQRVCKVWCKGVPT 249
Query: 648 EAALQEARTLEVESGGILVAVERVNKGYAIILYRGKNYE---RP----------ACLRPK 694
LE ++GG + + RV G + L+RG+NY RP A + PK
Sbjct: 250 IDMDNVCHHLEEKTGGKI--IHRV--GGVVYLFRGRNYNYRTRPQYPVMLWKPAAPVYPK 305
Query: 695 TLLTKREAMKRSLEAQRRQSLKLHVLELTRNIEK-LKLQLVKDK----EANSLETID 746
+ E + + EA + +++ + R ++ + + LVKD E + L ID
Sbjct: 306 LIQEAPEGLTK-FEADELRMKGXNLIPICRLVKNGVYISLVKDVRDAFEGSPLVKID 361
>gi|15240416|ref|NP_200300.1| CRS2-associated factor 2 [Arabidopsis thaliana]
gi|75170294|sp|Q9FFU1.1|CAF2M_ARATH RecName: Full=CRS2-associated factor 2, mitochondrial; Flags:
Precursor
gi|9758269|dbj|BAB08768.1| unnamed protein product [Arabidopsis thaliana]
gi|332009170|gb|AED96553.1| CRS2-associated factor 2 [Arabidopsis thaliana]
Length = 358
Score = 63.2 bits (152), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 46/71 (64%)
Query: 197 KKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRTHDSLERKTGGLVVWRSG 256
+++ +GK G+T +++ IH W+ AE V+I C + L+M LE K+GG +V+R+
Sbjct: 162 RQINLGKGGVTHNMIDDIHNHWKKAEAVRIKCLGVPTLDMDNICFHLEEKSGGKIVYRNI 221
Query: 257 SKIILYRGADY 267
+ ++LYRG +Y
Sbjct: 222 NILVLYRGRNY 232
>gi|356530475|ref|XP_003533806.1| PREDICTED: CRS2-associated factor 2, mitochondrial-like [Glycine
max]
Length = 388
Score = 63.2 bits (152), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 46/71 (64%)
Query: 197 KKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRTHDSLERKTGGLVVWRSG 256
+++ +GK G+T ++ IH W+ AEVV+I C + L+M LE K+GG V++R+
Sbjct: 161 RQINLGKGGVTHNMLGDIHNHWKKAEVVRIKCLGVPTLDMDNVCFHLEDKSGGKVIYRNI 220
Query: 257 SKIILYRGADY 267
+ ++LYRG +Y
Sbjct: 221 NILLLYRGRNY 231
Score = 40.8 bits (94), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 4/91 (4%)
Query: 592 EGITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVENMHLHWKHRELVKIISKQRKIEAAL 651
EG+T EE +RK GL L + R GV+ VE + +K +E+VK+ I
Sbjct: 260 EGLTYEETKEMRKSGLNSDPLLKLTRNGVYVNVVERVREAFKTQEVVKLDC----IHVGT 315
Query: 652 QEARTLEVESGGILVAVERVNKGYAIILYRG 682
+ + + V+ ++ V + K IIL+RG
Sbjct: 316 SDCKKIGVKLRDLVPCVPILFKDEQIILWRG 346
>gi|297792957|ref|XP_002864363.1| hypothetical protein ARALYDRAFT_331830 [Arabidopsis lyrata subsp.
lyrata]
gi|297310198|gb|EFH40622.1| hypothetical protein ARALYDRAFT_331830 [Arabidopsis lyrata subsp.
lyrata]
Length = 362
Score = 62.8 bits (151), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 45/71 (63%)
Query: 197 KKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRTHDSLERKTGGLVVWRSG 256
+++ +GK G+T +++ IH W+ AE V+I C + L+M LE K+GG +V+R
Sbjct: 158 RQINLGKGGVTHNMIDDIHNHWKKAEAVRIKCLGVPTLDMDNICFHLEEKSGGKIVYRHI 217
Query: 257 SKIILYRGADY 267
+ ++LYRG +Y
Sbjct: 218 NILVLYRGRNY 228
>gi|225425575|ref|XP_002267079.1| PREDICTED: CRS2-associated factor 2, chloroplastic [Vitis vinifera]
gi|297739063|emb|CBI28552.3| unnamed protein product [Vitis vinifera]
Length = 561
Score = 62.8 bits (151), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 49/90 (54%)
Query: 180 LSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRT 239
LS E+R L + +++ +G+ G+T ++ IH W+ V K+ C+ + ++M
Sbjct: 196 LSKAEIRMLVKPYLSHNRQVNLGRDGLTHNMLELIHSHWKRQRVCKVRCKGVPTIDMDNV 255
Query: 240 HDSLERKTGGLVVWRSGSKIILYRGADYKY 269
LE KTGG ++ R G + L+RG +Y Y
Sbjct: 256 CHHLEEKTGGKIIHRVGGVVYLFRGRNYNY 285
Score = 40.4 bits (93), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 4/98 (4%)
Query: 588 EVDKEGITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVENMHLHWKHRELVKIISKQRKI 647
E+ E +++ E ML K L + +GR G+ +E +H HWK + + K+ K
Sbjct: 190 EILGEPLSKAEIRMLVKPYLSHNRQVNLGRDGLTHNMLELIHSHWKRQRVCKVRCKGVPT 249
Query: 648 EAALQEARTLEVESGGILVAVERVNKGYAIILYRGKNY 685
LE ++GG + + RV G + L+RG+NY
Sbjct: 250 IDMDNVCHHLEEKTGGKI--IHRV--GGVVYLFRGRNY 283
>gi|302766798|ref|XP_002966819.1| hypothetical protein SELMODRAFT_408011 [Selaginella moellendorffii]
gi|300164810|gb|EFJ31418.1| hypothetical protein SELMODRAFT_408011 [Selaginella moellendorffii]
Length = 672
Score = 62.8 bits (151), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 71/132 (53%), Gaps = 17/132 (12%)
Query: 590 DKEGITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVENMHLHWKHRELVKIISKQRKIEA 649
+ E ++E E ++G + + F +G+RG++ G + N+H +WK E V+I +
Sbjct: 121 ETEPLSEGEAAHYARIGNKNQNFASVGKRGIYGGVIHNIHTNWKFHETVRIKCPRHN--- 177
Query: 650 ALQEARTLEVE----SGGILVAVERVNKGYAIILYRGKNYERPACLRPKTL-------LT 698
+++E R + E SGGI++ V + +I++RGKNY+ P L P TL
Sbjct: 178 SMEETRRIGAELARLSGGIVLDVL---EDRTVIMFRGKNYQTPEELYPPTLEAVDRRNAD 234
Query: 699 KREAMKRSLEAQ 710
R ++R+L++Q
Sbjct: 235 SRHHIQRALDSQ 246
Score = 45.4 bits (106), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Query: 201 IGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRL-NMKRTHDSLERKTGGLVV-WRSGSK 258
+GK GI G+++ IH W+ E V+I C + +R L R +GG+V+
Sbjct: 146 VGKRGIYGGVIHNIHTNWKFHETVRIKCPRHNSMEETRRIGAELARLSGGIVLDVLEDRT 205
Query: 259 IILYRGADYKYP 270
+I++RG +Y+ P
Sbjct: 206 VIMFRGKNYQTP 217
>gi|224130086|ref|XP_002320749.1| predicted protein [Populus trichocarpa]
gi|222861522|gb|EEE99064.1| predicted protein [Populus trichocarpa]
Length = 405
Score = 62.4 bits (150), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 60/108 (55%), Gaps = 6/108 (5%)
Query: 161 KNSKMNEKEKEVP-TLAELKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWR 219
K + M EK + P T AE K+ + +R +T +K++ +G G+T ++N IH W+
Sbjct: 144 KRTVMREKIQGKPLTKAEGKILVDKCQRNKT-----KKQINLGIDGLTHNMLNDIHNHWK 198
Query: 220 HAEVVKIVCEDLCRLNMKRTHDSLERKTGGLVVWRSGSKIILYRGADY 267
H E V++ C + ++MK LE KT G ++ R ++LYRG +Y
Sbjct: 199 HDEAVRVKCMGVPTVDMKNVCTQLEDKTFGKIIHRHCGLLVLYRGRNY 246
Score = 45.8 bits (107), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 53/111 (47%), Gaps = 5/111 (4%)
Query: 180 LSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRT 239
LS +E + +R G+ + K+ + G +V + + + +E+V+I C+ L R + K+
Sbjct: 277 LSIEETKEMRKRGLAVPALTKLSRNGYFGSLVPMVRDAFLVSELVRIDCQGLDRSDSKKI 336
Query: 240 HDSLERKTGGLVVWRSGSKIILYRGADYKYP-----YFLADESSTDGASSD 285
L ++V +I+++RG DYK P F AD D SD
Sbjct: 337 GCKLRDLVPCILVTFDKEQIVVWRGKDYKPPEDEDGLFFADRQPFDDPQSD 387
Score = 43.1 bits (100), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 47/92 (51%), Gaps = 1/92 (1%)
Query: 399 LTNDEMTTLRRLGRPLPCHFALGRNRNLQGLAAAIVKLWEKCEIAKIAVKRGAQNTNSEM 458
L+ +E +R+ G +P L RN L + + E+ +I + G ++S+
Sbjct: 277 LSIEETKEMRKRGLAVPALTKLSRNGYFGSLVPMVRDAFLVSELVRIDCQ-GLDRSDSKK 335
Query: 459 MAQELKRLTGGTLLSRDREFIVFYRGKDFLPP 490
+ +L+ L L++ D+E IV +RGKD+ PP
Sbjct: 336 IGCKLRDLVPCILVTFDKEQIVVWRGKDYKPP 367
>gi|255563935|ref|XP_002522967.1| conserved hypothetical protein [Ricinus communis]
gi|223537779|gb|EEF39397.1| conserved hypothetical protein [Ricinus communis]
Length = 409
Score = 62.0 bits (149), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 45/71 (63%)
Query: 197 KKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRTHDSLERKTGGLVVWRSG 256
+++ +GK G+T +++ IH W+ AE V+I C + L+M LE K+GG +++R
Sbjct: 204 RQINLGKGGVTHNMLDDIHNHWKKAEAVRIKCLGVPTLDMDNVCFHLEDKSGGKIIYRHI 263
Query: 257 SKIILYRGADY 267
+ ++LYRG +Y
Sbjct: 264 NILLLYRGRNY 274
>gi|449468496|ref|XP_004151957.1| PREDICTED: CRS2-associated factor 2, mitochondrial-like [Cucumis
sativus]
gi|449489970|ref|XP_004158472.1| PREDICTED: CRS2-associated factor 2, mitochondrial-like [Cucumis
sativus]
Length = 358
Score = 61.6 bits (148), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 45/71 (63%)
Query: 197 KKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRTHDSLERKTGGLVVWRSG 256
+++ +GK G+T +++ IH W+ AE V+I C + L+M LE K+GG +++R
Sbjct: 163 RQINLGKGGVTHNMLDDIHNHWKRAEAVRIKCLGVPTLDMDNICFHLEDKSGGKIIYRHI 222
Query: 257 SKIILYRGADY 267
+ ++LYRG +Y
Sbjct: 223 NILLLYRGRNY 233
>gi|356496030|ref|XP_003516873.1| PREDICTED: CRS2-associated factor 2, mitochondrial-like [Glycine
max]
Length = 358
Score = 61.6 bits (148), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 45/71 (63%)
Query: 197 KKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRTHDSLERKTGGLVVWRSG 256
+++ +GK G+T ++ IH W+ AE V+I C + L+M LE K+GG V++R+
Sbjct: 161 RQINLGKGGVTHNMLGDIHNHWKKAEAVRIKCLGVPTLDMDNVCFHLEDKSGGKVIYRNI 220
Query: 257 SKIILYRGADY 267
+ ++LYRG +Y
Sbjct: 221 NILLLYRGRNY 231
Score = 40.8 bits (94), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 4/91 (4%)
Query: 592 EGITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVENMHLHWKHRELVKIISKQRKIEAAL 651
EG+T EE +RK GL L + R GV+ VE + +K +E+VK+ I
Sbjct: 260 EGLTYEETKEMRKSGLNSDPLLKLTRNGVYVNVVERVREAFKTQEVVKLDC----IHVGT 315
Query: 652 QEARTLEVESGGILVAVERVNKGYAIILYRG 682
+ + + V+ ++ V + K IIL+RG
Sbjct: 316 SDCKKIGVKLRDLVPCVPILFKDEQIILWRG 346
>gi|297739073|emb|CBI28562.3| unnamed protein product [Vitis vinifera]
Length = 422
Score = 61.2 bits (147), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 53/97 (54%), Gaps = 3/97 (3%)
Query: 180 LSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRT 239
LS E+R L + +++ +G+ G+T ++ IH W+ V K+ C+ + ++M
Sbjct: 63 LSKAEIRMLVKPYLSHNRQVNLGRDGLTHNMLELIHSHWKRQRVCKVWCKGVPTIDMDNV 122
Query: 240 HDSLERKTGGLVVWRSGSKIILYRGADYKYPYFLADE 276
LE KTGG ++ R G + L+RG +Y Y LA+E
Sbjct: 123 CHHLEEKTGGKIIHRVGGVVYLFRGRNYNY---LANE 156
Score = 40.0 bits (92), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 4/98 (4%)
Query: 588 EVDKEGITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVENMHLHWKHRELVKIISKQRKI 647
E+ E +++ E ML K L + +GR G+ +E +H HWK + + K+ K
Sbjct: 57 EILGEPLSKAEIRMLVKPYLSHNRQVNLGRDGLTHNMLELIHSHWKRQRVCKVWCKGVPT 116
Query: 648 EAALQEARTLEVESGGILVAVERVNKGYAIILYRGKNY 685
LE ++GG + + RV G + L+RG+NY
Sbjct: 117 IDMDNVCHHLEEKTGGKI--IHRV--GGVVYLFRGRNY 150
>gi|14596153|gb|AAK68804.1| Unknown protein [Arabidopsis thaliana]
Length = 284
Score = 60.8 bits (146), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 45/72 (62%)
Query: 196 RKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRTHDSLERKTGGLVVWRS 255
++++ +G+ G+T ++N ++ W+HAE V++ C + L+MK LE KT G VV +
Sbjct: 177 KRQVNLGRDGLTHNMLNDVYNHWKHAEAVRVKCLGVPTLDMKNVIFHLEDKTFGQVVSKH 236
Query: 256 GSKIILYRGADY 267
++LYRG +Y
Sbjct: 237 SGTLVLYRGRNY 248
>gi|297802930|ref|XP_002869349.1| DNA binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297315185|gb|EFH45608.1| DNA binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 408
Score = 60.5 bits (145), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 45/72 (62%)
Query: 196 RKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRTHDSLERKTGGLVVWRS 255
++++ +G+ G+T ++N I+ W+HAE V++ C + L+MK LE KT G VV +
Sbjct: 178 KRQVNLGRDGLTHNMLNDIYNHWKHAEAVRVKCLGVPTLDMKNVIFHLEDKTFGQVVSKH 237
Query: 256 GSKIILYRGADY 267
++LYRG +Y
Sbjct: 238 CGTLVLYRGRNY 249
>gi|22329043|ref|NP_194830.2| CRS2-associated factor 1 [Arabidopsis thaliana]
gi|75161464|sp|Q8VYD9.1|CAF1M_ARATH RecName: Full=CRS2-associated factor 1, mitochondrial; Flags:
Precursor
gi|18176015|gb|AAL59968.1| unknown protein [Arabidopsis thaliana]
gi|20465409|gb|AAM20129.1| unknown protein [Arabidopsis thaliana]
gi|332660446|gb|AEE85846.1| CRS2-associated factor 1 [Arabidopsis thaliana]
Length = 405
Score = 60.5 bits (145), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 45/72 (62%)
Query: 196 RKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRTHDSLERKTGGLVVWRS 255
++++ +G+ G+T ++N ++ W+HAE V++ C + L+MK LE KT G VV +
Sbjct: 177 KRQVNLGRDGLTHNMLNDVYNHWKHAEAVRVKCLGVPTLDMKNVIFHLEDKTFGQVVSKH 236
Query: 256 GSKIILYRGADY 267
++LYRG +Y
Sbjct: 237 SGTLVLYRGRNY 248
Score = 41.2 bits (95), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 51/108 (47%), Gaps = 7/108 (6%)
Query: 180 LSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRT 239
LS E + +R G+ + K+ K G +V + + + +E+V+I C L R + K+
Sbjct: 279 LSIDETKAMRKKGLAVPALTKLAKNGYYGSLVPMVRDAFLVSELVRIDCLGLERKDYKKI 338
Query: 240 HDSLERKTGGLVVWRSGSKIILYRGADYK-------YPYFLADESSTD 280
L ++V +++++RG DYK Y F+ ESS D
Sbjct: 339 GAKLRDLVPCILVTFDKEQVVIWRGKDYKPPKEDDEYSSFIHRESSID 386
>gi|42573097|ref|NP_974645.1| CRS2-associated factor 1 [Arabidopsis thaliana]
gi|332660445|gb|AEE85845.1| CRS2-associated factor 1 [Arabidopsis thaliana]
Length = 341
Score = 60.5 bits (145), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 45/72 (62%)
Query: 196 RKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRTHDSLERKTGGLVVWRS 255
++++ +G+ G+T ++N ++ W+HAE V++ C + L+MK LE KT G VV +
Sbjct: 177 KRQVNLGRDGLTHNMLNDVYNHWKHAEAVRVKCLGVPTLDMKNVIFHLEDKTFGQVVSKH 236
Query: 256 GSKIILYRGADY 267
++LYRG +Y
Sbjct: 237 SGTLVLYRGRNY 248
>gi|168045030|ref|XP_001774982.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673729|gb|EDQ60248.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 295
Score = 60.5 bits (145), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 45/73 (61%)
Query: 197 KKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRTHDSLERKTGGLVVWRSG 256
++L +G+ G T ++ +H+ W+ +VV+I C+ + ++M LE KTGG ++ R+G
Sbjct: 108 RQLNLGRDGFTHNMLASVHDYWKRRQVVRIKCKGVPTVDMDNVCTVLEDKTGGKIISRAG 167
Query: 257 SKIILYRGADYKY 269
+ L+RG +Y Y
Sbjct: 168 GVVYLFRGRNYNY 180
>gi|2980765|emb|CAA18192.1| hypothetical protein [Arabidopsis thaliana]
gi|7270003|emb|CAB79819.1| hypothetical protein [Arabidopsis thaliana]
Length = 392
Score = 60.1 bits (144), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 45/72 (62%)
Query: 196 RKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRTHDSLERKTGGLVVWRS 255
++++ +G+ G+T ++N ++ W+HAE V++ C + L+MK LE KT G VV +
Sbjct: 177 KRQVNLGRDGLTHNMLNDVYNHWKHAEAVRVKCLGVPTLDMKNVIFHLEDKTFGQVVSKH 236
Query: 256 GSKIILYRGADY 267
++LYRG +Y
Sbjct: 237 SGTLVLYRGRNY 248
>gi|307135966|gb|ADN33825.1| RNA splicing factor [Cucumis melo subsp. melo]
Length = 603
Score = 59.7 bits (143), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 48/90 (53%)
Query: 180 LSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRT 239
L E+R L + +++ +G+ G+T ++ IH W+ V K+ C+ + ++M
Sbjct: 242 LKNWEIRMLVKPHLSHNRQVNLGRDGLTHNMLELIHSHWKRQRVCKVRCKGVPTVDMDNI 301
Query: 240 HDSLERKTGGLVVWRSGSKIILYRGADYKY 269
+E KTGG ++ R G + L+RG +Y Y
Sbjct: 302 CHHIEEKTGGKIIHRVGGVLYLFRGRNYNY 331
>gi|449478585|ref|XP_004155360.1| PREDICTED: LOW QUALITY PROTEIN: CRS2-associated factor 2,
chloroplastic-like [Cucumis sativus]
Length = 603
Score = 59.3 bits (142), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 48/90 (53%)
Query: 180 LSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRT 239
L E+R L + +++ +G+ G+T ++ IH W+ V K+ C+ + ++M
Sbjct: 242 LKNWEIRMLVKPHLSHNRQVNLGRDGLTHNMLELIHSHWKRQRVCKVRCKGVPTVDMDNI 301
Query: 240 HDSLERKTGGLVVWRSGSKIILYRGADYKY 269
+E KTGG ++ R G + L+RG +Y Y
Sbjct: 302 CHHIEEKTGGKIIHRVGGVLYLFRGRNYNY 331
>gi|449434945|ref|XP_004135256.1| PREDICTED: LOW QUALITY PROTEIN: CRS2-associated factor 2,
chloroplastic-like [Cucumis sativus]
Length = 602
Score = 59.3 bits (142), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 48/90 (53%)
Query: 180 LSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRT 239
L E+R L + +++ +G+ G+T ++ IH W+ V K+ C+ + ++M
Sbjct: 241 LKNWEIRMLVKPHLSHNRQVNLGRDGLTHNMLELIHSHWKRQRVCKVRCKGVPTVDMDNI 300
Query: 240 HDSLERKTGGLVVWRSGSKIILYRGADYKY 269
+E KTGG ++ R G + L+RG +Y Y
Sbjct: 301 CHHIEEKTGGKIIHRVGGVLYLFRGRNYNY 330
>gi|255568848|ref|XP_002525395.1| conserved hypothetical protein [Ricinus communis]
gi|223535358|gb|EEF37033.1| conserved hypothetical protein [Ricinus communis]
Length = 561
Score = 58.9 bits (141), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 51/90 (56%)
Query: 180 LSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRT 239
L+ E+++L + +++ +G+ G+T ++ IH WR + V K+ C+ + ++M
Sbjct: 192 LTRWEIKQLVKPLLSDNRQVNLGRDGLTHNMLELIHSHWRRSPVCKVRCKGIPTVDMNNI 251
Query: 240 HDSLERKTGGLVVWRSGSKIILYRGADYKY 269
LE +TGG +++R G + L+ G +Y Y
Sbjct: 252 CRHLEERTGGKIIYRIGGVVYLFCGRNYDY 281
>gi|302763677|ref|XP_002965260.1| hypothetical protein SELMODRAFT_62891 [Selaginella moellendorffii]
gi|302809791|ref|XP_002986588.1| hypothetical protein SELMODRAFT_42935 [Selaginella moellendorffii]
gi|300145771|gb|EFJ12445.1| hypothetical protein SELMODRAFT_42935 [Selaginella moellendorffii]
gi|300167493|gb|EFJ34098.1| hypothetical protein SELMODRAFT_62891 [Selaginella moellendorffii]
Length = 366
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 44/75 (58%)
Query: 197 KKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRTHDSLERKTGGLVVWRSG 256
+++ IGK G+T +++ IH W+ V+K+ C+ + ++M +E KTGG ++ R G
Sbjct: 111 RQVNIGKDGLTHNMLDLIHCHWKRRRVIKLRCKGVPTIDMDNVCFHIEDKTGGKIIQRHG 170
Query: 257 SKIILYRGADYKYPY 271
I L+RG +Y Y
Sbjct: 171 GSIYLFRGRNYNPRY 185
>gi|413946393|gb|AFW79042.1| hypothetical protein ZEAMMB73_840751, partial [Zea mays]
Length = 140
Score = 57.8 bits (138), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/41 (58%), Positives = 33/41 (80%)
Query: 459 MAQELKRLTGGTLLSRDREFIVFYRGKDFLPPAASSAIEER 499
MA+E+K LTGGTLL R++ +IV YRGKDFLP + ++ + ER
Sbjct: 1 MAEEIKNLTGGTLLLRNKFYIVIYRGKDFLPTSVAAVLAER 41
>gi|22329751|ref|NP_173754.2| CRS2-associated factor 2 [Arabidopsis thaliana]
gi|75173812|sp|Q9LDA9.1|CAF2P_ARATH RecName: Full=CRS2-associated factor 2, chloroplastic; AltName:
Full=Chloroplastic group IIA intron splicing facilitator
CRS2-associated factor 2; Flags: Precursor
gi|8778588|gb|AAF79596.1|AC007945_16 F28C11.4 [Arabidopsis thaliana]
gi|9295699|gb|AAF87005.1|AC005292_14 F26F24.27 [Arabidopsis thaliana]
gi|17065312|gb|AAL32810.1| Unknown protein [Arabidopsis thaliana]
gi|21387129|gb|AAM47968.1| unknown protein [Arabidopsis thaliana]
gi|332192262|gb|AEE30383.1| CRS2-associated factor 2 [Arabidopsis thaliana]
Length = 564
Score = 57.8 bits (138), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 41/73 (56%)
Query: 197 KKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRTHDSLERKTGGLVVWRSG 256
+++ +G+ G T ++ IH W+ V K+ C+ + ++M LE KTGG ++ R G
Sbjct: 220 RQVNLGRDGFTHNMLELIHSHWKRRRVCKVRCKGVPTVDMNNVCRVLEEKTGGEIIHRVG 279
Query: 257 SKIILYRGADYKY 269
+ L+RG +Y Y
Sbjct: 280 GVVYLFRGRNYNY 292
Score = 44.7 bits (104), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 47/98 (47%), Gaps = 4/98 (4%)
Query: 588 EVDKEGITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVENMHLHWKHRELVKIISKQRKI 647
EV E + E+ ML K + + +GR G +E +H HWK R + K+ K
Sbjct: 197 EVLGEPLKRWEKGMLIKPHMHDNRQVNLGRDGFTHNMLELIHSHWKRRRVCKVRCKGVPT 256
Query: 648 EAALQEARTLEVESGGILVAVERVNKGYAIILYRGKNY 685
R LE ++GG + + RV G + L+RG+NY
Sbjct: 257 VDMNNVCRVLEEKTGGEI--IHRV--GGVVYLFRGRNY 290
>gi|297850808|ref|XP_002893285.1| hypothetical protein ARALYDRAFT_335585 [Arabidopsis lyrata subsp.
lyrata]
gi|297339127|gb|EFH69544.1| hypothetical protein ARALYDRAFT_335585 [Arabidopsis lyrata subsp.
lyrata]
Length = 565
Score = 57.4 bits (137), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 41/73 (56%)
Query: 197 KKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRTHDSLERKTGGLVVWRSG 256
+++ +G+ G T ++ IH W+ V K+ C+ + ++M LE KTGG ++ R G
Sbjct: 222 RQVNLGRDGFTHNMLELIHSHWKRRRVCKVRCKGVPTVDMDNVCRVLEEKTGGEIIHRVG 281
Query: 257 SKIILYRGADYKY 269
+ L+RG +Y Y
Sbjct: 282 GVVYLFRGRNYNY 294
Score = 47.8 bits (112), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 94/197 (47%), Gaps = 37/197 (18%)
Query: 588 EVDKEGITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVENMHLHWKHRELVKIISKQRKI 647
E+ E + + E+ ML K + + +GR G +E +H HWK R + K+ K
Sbjct: 199 EILGEPLKKWEKGMLIKPHMHDNRQVNLGRDGFTHNMLELIHSHWKRRRVCKVRCKGVPT 258
Query: 648 EAALQEARTLEVESGGILVAVERVNKGYAIILYRGKNYE---RP----------ACLRPK 694
R LE ++GG + + RV G + L+RG+NY RP A + PK
Sbjct: 259 VDMDNVCRVLEEKTGGEI--IHRV--GGVVYLFRGRNYNYRTRPQYPLMLWKPAAPVYPK 314
Query: 695 TL------LTKREAMKRSLEAQRRQSLKLHVLELTRNIEKLKLQLVKD-KEANSLETIDE 747
+ LTK EA++ ++ +SL+ + +L++N + + LVKD ++A L
Sbjct: 315 LIQEVPEGLTKEEALEFRVKG---KSLR-PICKLSKN--GVYVSLVKDVRDAFELS---- 364
Query: 748 SILPLVKEEIGDMQPAE 764
PLVK + ++P++
Sbjct: 365 ---PLVKVDCPGLEPSD 378
>gi|356524038|ref|XP_003530640.1| PREDICTED: CRS2-associated factor 2, chloroplastic-like [Glycine
max]
Length = 593
Score = 57.4 bits (137), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 45/86 (52%)
Query: 184 ELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRTHDSL 243
E+ L + +++ +G+ G+T ++ IH W+ V KI C + ++M +
Sbjct: 201 EIHMLVKPMMSYNRQVNLGRDGLTHNMLELIHSHWKRRRVCKIRCLGVPTVDMDNVCHHI 260
Query: 244 ERKTGGLVVWRSGSKIILYRGADYKY 269
E KTGG ++ R G + L+RG +Y Y
Sbjct: 261 EEKTGGKIIHRVGGVVYLFRGRNYNY 286
Score = 41.2 bits (95), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 87/382 (22%), Positives = 150/382 (39%), Gaps = 69/382 (18%)
Query: 588 EVDKEGITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVENMHLHWKHRELVKIISKQRKI 647
E+ E + + E +ML K + + +GR G+ +E +H HWK R + KI
Sbjct: 191 EILGEPLKKWEIHMLVKPMMSYNRQVNLGRDGLTHNMLELIHSHWKRRRVCKIRCLGVPT 250
Query: 648 EAALQEARTLEVESGGILVAVERVNKGYAIILYRGKNYE---RP----------ACLRPK 694
+E ++GG + + RV G + L+RG+NY RP A + PK
Sbjct: 251 VDMDNVCHHIEEKTGGKI--IHRV--GGVVYLFRGRNYNYSTRPQYPVMLWKPAAPVYPK 306
Query: 695 TL------LTKREAMKRSLEAQRRQSLKLHVLELTRNIEKLKLQLVKDK----EANSLET 744
+ LTK EA + ++ + L + +L +N + LVKD E + L
Sbjct: 307 LIQDAPGGLTKDEADELRMKGKSL----LPICKLAKN--GVYTSLVKDVRDAFEGSILVK 360
Query: 745 I-----DESILPLVKEEIGDMQPAECMRSDTSHEVNVQARGECGAD--------LTSTES 791
I D S + ++ D+ P C+ E + RG+ T +++
Sbjct: 361 INCKGLDPSDYKKIGAKLKDLVP--CVLLSFDDEQILMWRGKDWKSRYPQPLPVFTPSKA 418
Query: 792 NDTGDATIDGPPAIQQDKQTESLTHNGISINEIESKSSLKSVSKESQLNMIADFFAEGVA 851
N G+ G + H+G +N SL + +S ++ D F G
Sbjct: 419 NIVGNLENSG------ETDDNQYKHDGNMVNTSPKMLSLWKRAIQSSKALLLDEFNLG-- 470
Query: 852 SGTSSCPDNSMQEVMEYNTIVDAEQCSSDNEPRESSIESAKSRSSENEPIEQSFELAKGR 911
PD +++V E++T+ A + S S S+ ++ E +FE +
Sbjct: 471 ------PDALLEKVEEFDTVSQALEHS-------HPAFSLSSKENDAEGSSANFENSYSS 517
Query: 912 SGLSTPIGTGNVWNENNSRAIQ 933
GL T + +S A+Q
Sbjct: 518 DGLHTEEDYAKFEDSYSSDALQ 539
>gi|159469243|ref|XP_001692777.1| predicted protein [Chlamydomonas reinhardtii]
gi|158278030|gb|EDP03796.1| predicted protein [Chlamydomonas reinhardtii]
Length = 321
Score = 56.6 bits (135), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 46/74 (62%), Gaps = 7/74 (9%)
Query: 199 LKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLN-----MKRTHDSLERKTGGLVVW 253
+++G +G+ ++ + WR++E+VK+ + R N + + +LE++TGGLVVW
Sbjct: 139 VRLGPSGLNASVLTSVASAWRNSELVKL--RIVSRANKYMPYITQVCAALEQRTGGLVVW 196
Query: 254 RSGSKIILYRGADY 267
R+G I L+RGA Y
Sbjct: 197 RAGGSIWLFRGAGY 210
>gi|224110940|ref|XP_002315689.1| predicted protein [Populus trichocarpa]
gi|222864729|gb|EEF01860.1| predicted protein [Populus trichocarpa]
Length = 506
Score = 56.6 bits (135), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 47/86 (54%)
Query: 184 ELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRTHDSL 243
E++ L + +++ +G+ G+T ++ +H W+ V K+ C+ + ++M L
Sbjct: 146 EIKLLIKPHLSDNRQVNLGEDGLTHNMLELVHSHWKRRRVCKVRCKGVPTVDMDNVCRHL 205
Query: 244 ERKTGGLVVWRSGSKIILYRGADYKY 269
E KTGG ++ R G + L+RG +Y Y
Sbjct: 206 EEKTGGKIIHRVGGVVYLFRGRNYNY 231
Score = 43.1 bits (100), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 52/204 (25%), Positives = 90/204 (44%), Gaps = 27/204 (13%)
Query: 576 LAELEEERPEQYEVDKEGITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVENMHLHWKHR 635
+ EE + E+ E + E +L K L + +G G+ +E +H HWK R
Sbjct: 124 FGKFPEEGKSREEILGEPLKTWEIKLLIKPHLSDNRQVNLGEDGLTHNMLELVHSHWKRR 183
Query: 636 ELVKIISKQRKIEAALQEARTLEVESGGILVAVERVNKGYAIILYRGKNYE--------- 686
+ K+ K R LE ++GG + + RV G + L+RG+NY
Sbjct: 184 RVCKVRCKGVPTVDMDNVCRHLEEKTGGKI--IHRV--GGVVYLFRGRNYNYRTRPQYPV 239
Query: 687 ---RPAC-LRPKTLLTKREAMKRSLEAQRRQSLK--LHVLELTRNIEKLKLQLVKDKEAN 740
+PA + PK + E + ++ + R+ K L + +L +N + + LV+D A
Sbjct: 240 MLWKPATPVYPKLIQEAPEGLTKAQADEFRKKGKNLLPICKLAKN--GVYITLVRDVRA- 296
Query: 741 SLETIDESILPLVKEEIGDMQPAE 764
+ S PLVK + M+P++
Sbjct: 297 ---AFEGS--PLVKVDCKGMEPSD 315
>gi|307106930|gb|EFN55174.1| hypothetical protein CHLNCDRAFT_52520 [Chlorella variabilis]
Length = 187
Score = 55.5 bits (132), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 9/84 (10%)
Query: 185 LRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRTHDSLE 244
L++LR G+ L+ +K+G+ G EG+ N +V ++ C NMK LE
Sbjct: 68 LKQLRRDGLALKDVIKLGRRGPAEGLAN---------QVARVYCHGKHAANMKVLVQQLE 118
Query: 245 RKTGGLVVWRSGSKIILYRGADYK 268
TGG+VV ++G ++LYRG ++
Sbjct: 119 AATGGMVVHKAGGTVLLYRGDGWQ 142
>gi|302759655|ref|XP_002963250.1| hypothetical protein SELMODRAFT_404989 [Selaginella moellendorffii]
gi|300168518|gb|EFJ35121.1| hypothetical protein SELMODRAFT_404989 [Selaginella moellendorffii]
Length = 274
Score = 54.7 bits (130), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 98/184 (53%), Gaps = 15/184 (8%)
Query: 559 NIR--LSRVLEKKAEAEKLLAELE--EERPEQYEVDKEGITEEERYMLRKVGLRMKAFLL 614
N+R L + E+ +K+L E + E++P D E ++ E L++ + FL
Sbjct: 64 NLREMLKKTYERIELKKKILQEYDFPEDKPVH---DPEYLSPEFMTALKERNRCIDDFLT 120
Query: 615 MGRRGVFDGTVENMHLHWKHRELVKIISKQRKIEAALQEARTLEVESGGILVAVERVNKG 674
+G+RGV++G + +++ HW + E ++I + + A + SG +++AV +
Sbjct: 121 IGKRGVWEGFIRDIYSHWINHETLRIYCEGYPLRKLRPMAEKVARMSGAVVIAV--TEET 178
Query: 675 YAIILYRGKN----YERPACLRPKTLLTKREAMKRSLEAQRRQSLKLHVLELTRNIEKLK 730
+ ILYRG+N Y+ P+ R + +L K +A+K++L + Q L +V ELT I K +
Sbjct: 179 MSFILYRGRNFSHGYQPPS--RIENMLNKGKALKKALLLKSLQHLYRNVRELTERIHKHR 236
Query: 731 LQLV 734
L+ V
Sbjct: 237 LRAV 240
Score = 45.1 bits (105), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Query: 199 LKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRTHDSLERKTGGLV--VWRSG 256
L IGK G+ EG + I+ W + E ++I CE ++ + + R +G +V V
Sbjct: 119 LTIGKRGVWEGFIRDIYSHWINHETLRIYCEGYPLRKLRPMAEKVARMSGAVVIAVTEET 178
Query: 257 SKIILYRGADYKYPY 271
ILYRG ++ + Y
Sbjct: 179 MSFILYRGRNFSHGY 193
>gi|168014860|ref|XP_001759969.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162688719|gb|EDQ75094.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 297
Score = 53.5 bits (127), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 48/90 (53%)
Query: 180 LSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRT 239
L+ E+R L R++L +GK G+T ++ +H W+ V +I C + ++M
Sbjct: 89 LTKDEVRELVGRACAERRRLDLGKDGLTHNMLELLHRHWKRRRVCRIKCYGVPTVDMDNL 148
Query: 240 HDSLERKTGGLVVWRSGSKIILYRGADYKY 269
+E K+GG ++ RS + ++RG +Y +
Sbjct: 149 CRVIEEKSGGKIIRRSQGMLYVFRGRNYNW 178
>gi|404493261|ref|YP_006717367.1| RNA-binding protein YhbY [Pelobacter carbinolicus DSM 2380]
gi|77545319|gb|ABA88881.1| RNA-binding protein YhbY [Pelobacter carbinolicus DSM 2380]
Length = 103
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 49/87 (56%)
Query: 180 LSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRT 239
L+GK++R LR LG L+ + IGK G++ +++ I E E++KI + C L+ K
Sbjct: 10 LTGKQVRHLRALGHHLKPVVLIGKEGVSAALISSIDECLTRHELLKIKVLETCPLDRKEA 69
Query: 240 HDSLERKTGGLVVWRSGSKIILYRGAD 266
D + +T G V G I++YR A+
Sbjct: 70 ADLIASETRGHVAQVLGRTILIYRAAE 96
>gi|118579618|ref|YP_900868.1| hypothetical protein Ppro_1188 [Pelobacter propionicus DSM 2379]
gi|118502328|gb|ABK98810.1| protein of unknown function UPF0044 [Pelobacter propionicus DSM
2379]
Length = 105
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 46/87 (52%)
Query: 180 LSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRT 239
L+GK+ R LR LG L+ ++IGK I E ++N ++ H E++K+ + C L+ +
Sbjct: 2 LTGKQKRHLRALGHSLKPIIQIGKKEIEEALINEVNAALEHHELIKVKLLESCMLDKHES 61
Query: 240 HDSLERKTGGLVVWRSGSKIILYRGAD 266
+ L R V G +LYR A+
Sbjct: 62 SEMLARACNAQVAQILGRTFLLYRPAE 88
>gi|414884469|tpg|DAA60483.1| TPA: CRS2-associated factor 1, Precursor [Zea mays]
Length = 392
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 64/140 (45%), Gaps = 8/140 (5%)
Query: 382 PGYRRPFRLLPYGVQPKLTNDEMTTLRRLGRPLPCHFALGRNRNLQGLAAAIVKLWEKCE 441
P Y R +P G+ P DE T +R G LP LG+N L + + +E C+
Sbjct: 8 PVYPRLVTKVPGGLTP----DEATEMRTRGHQLPPICKLGKNGVYANLVNQVREAFEACD 63
Query: 442 IAKIAVKRGAQNTNSEMMAQELKRLTGGTLLSRDREFIVFYRGKDF---LPPAASSAIEE 498
+ ++ G ++ + +LK L LLS + E I+ +RG D+ LPP +S
Sbjct: 64 LVRVDCS-GLNKSDCRKIGAKLKDLVPCILLSFEFEHILMWRGSDWKSSLPPLENSYEVT 122
Query: 499 RRKHEFSTSNDSKEEPELGN 518
+ + FS +++ GN
Sbjct: 123 KVQESFSGKESNEKVTHSGN 142
Score = 42.0 bits (97), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 46/89 (51%)
Query: 180 LSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRT 239
L+ E +RT G L K+GK G+ +VN + E + ++V++ C L + + ++
Sbjct: 21 LTPDEATEMRTRGHQLPPICKLGKNGVYANLVNQVREAFEACDLVRVDCSGLNKSDCRKI 80
Query: 240 HDSLERKTGGLVVWRSGSKIILYRGADYK 268
L+ +++ I+++RG+D+K
Sbjct: 81 GAKLKDLVPCILLSFEFEHILMWRGSDWK 109
>gi|225427732|ref|XP_002265886.1| PREDICTED: uncharacterized protein LOC100243481 [Vitis vinifera]
gi|297744749|emb|CBI38011.3| unnamed protein product [Vitis vinifera]
Length = 287
Score = 50.1 bits (118), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 71/156 (45%), Gaps = 18/156 (11%)
Query: 111 PHRIPKYRVGHTIDDSWSTPENPVPVPGTGAAIVRYNQLNKEVGRQKWLAKNSKMNEKEK 170
PH IP+ ++ ++D E +G IV + E+ +Q+ L + S+ KE
Sbjct: 91 PHSIPQEQL---LNDLAEEEE-------SGGEIVEEEESGGEIAKQEELYE-SEETVKET 139
Query: 171 EVPTLAELKLSGKELRRLRTLGIGLRKKLK---IGKAGITEGIVNGIHERWRHAEVVKIV 227
P + L+ KE + L + L KKLK +GK G+T + + E E++KI
Sbjct: 140 SRP----VNLTIKEKKELASYAHSLGKKLKCQLVGKQGVTASVASAFIENLESNELLKIK 195
Query: 228 CEDLCRLNMKRTHDSLERKTGGLVVWRSGSKIILYR 263
C + LE TG +VV + G +ILYR
Sbjct: 196 IHGTCPGELPDVVKQLEESTGSVVVGQIGRSVILYR 231
Score = 43.5 bits (101), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 2/94 (2%)
Query: 928 NSRAIQLSNRDRLLLRKQALRM-KKRPVLAVGRSNIVTGVAKAIKAHFEKYPLAIVNVKG 986
SR + L+ +++ L A + KK VG+ + VA A + E L + + G
Sbjct: 139 TSRPVNLTIKEKKELASYAHSLGKKLKCQLVGKQGVTASVASAFIENLESNELLKIKIHG 198
Query: 987 RAKGTSVQEVVAKLEEATGAVLVSQEPSKVILYR 1020
G + +VV +LEE+TG+V+V Q VILYR
Sbjct: 199 TCPG-ELPDVVKQLEESTGSVVVGQIGRSVILYR 231
>gi|195623148|gb|ACG33404.1| CRS1 / YhbY domain containing protein [Zea mays]
Length = 259
Score = 48.9 bits (115), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 50/100 (50%), Gaps = 3/100 (3%)
Query: 172 VPTLAELKLSGKELRRLRTLGIGLRKKLK---IGKAGITEGIVNGIHERWRHAEVVKIVC 228
+P L KLS KE + L + GL KKLK +GK+G+T +V+ + E++K+
Sbjct: 88 LPRLPRPKLSVKERKELASYAHGLGKKLKSQQVGKSGVTPNLVSAFSDNLESNELLKLKI 147
Query: 229 EDLCRLNMKRTHDSLERKTGGLVVWRSGSKIILYRGADYK 268
C + LE TG + V + G +ILYR + K
Sbjct: 148 HGNCPGELPDVILQLEESTGSIAVDQIGRSVILYRPSTSK 187
>gi|212723242|ref|NP_001132805.1| uncharacterized protein LOC100194294 [Zea mays]
gi|194695436|gb|ACF81802.1| unknown [Zea mays]
gi|413933849|gb|AFW68400.1| CRS1 / YhbY domain containing protein [Zea mays]
Length = 259
Score = 48.9 bits (115), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 50/100 (50%), Gaps = 3/100 (3%)
Query: 172 VPTLAELKLSGKELRRLRTLGIGLRKKLK---IGKAGITEGIVNGIHERWRHAEVVKIVC 228
+P L KLS KE + L + GL KKLK +GK+G+T +V+ + E++K+
Sbjct: 88 LPRLPRPKLSVKERKELASYAHGLGKKLKSQQVGKSGVTPNLVSAFSDNLESNELLKLKI 147
Query: 229 EDLCRLNMKRTHDSLERKTGGLVVWRSGSKIILYRGADYK 268
C + LE TG + V + G +ILYR + K
Sbjct: 148 HGNCPGELPDVILQLEESTGSIAVDQIGRSVILYRPSTSK 187
>gi|242033975|ref|XP_002464382.1| hypothetical protein SORBIDRAFT_01g017260 [Sorghum bicolor]
gi|241918236|gb|EER91380.1| hypothetical protein SORBIDRAFT_01g017260 [Sorghum bicolor]
Length = 261
Score = 48.9 bits (115), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 50/100 (50%), Gaps = 3/100 (3%)
Query: 172 VPTLAELKLSGKELRRLRTLGIGLRKKLK---IGKAGITEGIVNGIHERWRHAEVVKIVC 228
+P L KLS KE + L + GL KKLK +GK+G+T +V+ + E++K+
Sbjct: 92 LPRLPRPKLSVKERKELASYAHGLGKKLKSQQVGKSGVTPNLVSAFSDNLESNELLKLKI 151
Query: 229 EDLCRLNMKRTHDSLERKTGGLVVWRSGSKIILYRGADYK 268
C + LE TG + V + G +ILYR + K
Sbjct: 152 HGNCPGELPDVILQLEESTGSIAVDQIGRSVILYRPSTSK 191
>gi|162452193|ref|YP_001614560.1| hypothetical protein sce3920 [Sorangium cellulosum So ce56]
gi|161162775|emb|CAN94080.1| hypothetical protein sce3920 [Sorangium cellulosum So ce56]
Length = 100
Score = 48.1 bits (113), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 44/86 (51%)
Query: 178 LKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMK 237
+ L+GK+ R LR LG L +++GKAG+T+G+V + E+VK+ C +
Sbjct: 1 MDLTGKQRRHLRALGHHLDPVVQLGKAGLTDGVVAAVDAALERHELVKVRLGTECPDELD 60
Query: 238 RTHDSLERKTGGLVVWRSGSKIILYR 263
D+L + V G I+LYR
Sbjct: 61 DVADTLSERLRAAVAQTLGRTILLYR 86
>gi|326499844|dbj|BAJ90757.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 286
Score = 48.1 bits (113), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 47/100 (47%), Gaps = 3/100 (3%)
Query: 172 VPTLAELKLSGKELRRLRTLGIGLRKKLK---IGKAGITEGIVNGIHERWRHAEVVKIVC 228
+P L KL KE + L + GL KKLK +GK G+T +V + E++K+
Sbjct: 120 LPRLPRPKLDVKERKELASYAHGLGKKLKSQQVGKGGVTPNLVTAFTDNLESNELLKLKI 179
Query: 229 EDLCRLNMKRTHDSLERKTGGLVVWRSGSKIILYRGADYK 268
C + LE TG + V + G +ILYR + K
Sbjct: 180 HGNCPGELPDVIRQLEESTGSIAVDQIGRSVILYRPSSSK 219
>gi|125532621|gb|EAY79186.1| hypothetical protein OsI_34297 [Oryza sativa Indica Group]
Length = 251
Score = 47.4 bits (111), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 49/100 (49%), Gaps = 3/100 (3%)
Query: 172 VPTLAELKLSGKELRRLRTLGIGLRKKLK---IGKAGITEGIVNGIHERWRHAEVVKIVC 228
+P L KLS KE + L + GL K+LK +GK G+T +V ++ E++K+
Sbjct: 93 LPRLPRPKLSVKERKELASYAHGLGKRLKSQQVGKGGVTPSVVAAFNDNLESNELLKLKI 152
Query: 229 EDLCRLNMKRTHDSLERKTGGLVVWRSGSKIILYRGADYK 268
C + LE TG + V + G +ILYR + K
Sbjct: 153 HLNCPGELPDVILQLEESTGSIAVDQIGRSVILYRPSTSK 192
>gi|115482902|ref|NP_001065044.1| Os10g0512500 [Oryza sativa Japonica Group]
gi|40736983|gb|AAG13565.2|AC073867_11 hypothetical protein [Oryza sativa Japonica Group]
gi|78708905|gb|ABB47880.1| CRS1/YhbY domain containing protein, expressed [Oryza sativa
Japonica Group]
gi|113639653|dbj|BAF26958.1| Os10g0512500 [Oryza sativa Japonica Group]
gi|125575381|gb|EAZ16665.1| hypothetical protein OsJ_32140 [Oryza sativa Japonica Group]
gi|215740754|dbj|BAG97410.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 252
Score = 47.0 bits (110), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 49/100 (49%), Gaps = 3/100 (3%)
Query: 172 VPTLAELKLSGKELRRLRTLGIGLRKKLK---IGKAGITEGIVNGIHERWRHAEVVKIVC 228
+P L KLS KE + L + GL K+LK +GK G+T +V ++ E++K+
Sbjct: 94 LPRLPRPKLSVKERKELASYAHGLGKRLKSQQVGKGGVTPSVVAAFNDNLESNELLKLKI 153
Query: 229 EDLCRLNMKRTHDSLERKTGGLVVWRSGSKIILYRGADYK 268
C + LE TG + V + G +ILYR + K
Sbjct: 154 HLNCPGELPDVILQLEESTGSIAVDQIGRSVILYRPSTSK 193
>gi|210632348|ref|ZP_03297315.1| hypothetical protein COLSTE_01209 [Collinsella stercoris DSM 13279]
gi|210159664|gb|EEA90635.1| RNA-binding protein, YhbY family [Collinsella stercoris DSM 13279]
Length = 99
Score = 46.6 bits (109), Expect = 0.070, Method: Composition-based stats.
Identities = 29/91 (31%), Positives = 45/91 (49%)
Query: 178 LKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMK 237
+ L+GK++R+LR L L + IGKA +T+ I E E++K +D L+ +
Sbjct: 1 MALTGKQVRQLRALAHHLNPVVLIGKADVTDAIAKQAKEALEAHELIKCGVQDGSLLSCR 60
Query: 238 RTHDSLERKTGGLVVWRSGSKIILYRGADYK 268
D L + G VV G + LYR + K
Sbjct: 61 EAADQLAERVGAEVVQVIGHRFSLYRASSRK 91
>gi|298252774|ref|ZP_06976568.1| RNA-binding protein (KH domain, possibly ribosomal) [Gardnerella
vaginalis 5-1]
gi|297533138|gb|EFH72022.1| RNA-binding protein (KH domain, possibly ribosomal) [Gardnerella
vaginalis 5-1]
Length = 101
Score = 46.6 bits (109), Expect = 0.083, Method: Composition-based stats.
Identities = 27/86 (31%), Positives = 47/86 (54%)
Query: 178 LKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMK 237
+ L+ K++++LR L L L +GK IT+ V E ++ E++K +D L+ K
Sbjct: 1 MALTKKQIKQLRALANTLSPLLYVGKNDITDAAVKQADETMQYHELMKCAVQDGSGLSAK 60
Query: 238 RTHDSLERKTGGLVVWRSGSKIILYR 263
D+L +K G VV G++ +L+R
Sbjct: 61 EAADALAQKLGAEVVQVIGNRFVLFR 86
>gi|229815867|ref|ZP_04446191.1| hypothetical protein COLINT_02923 [Collinsella intestinalis DSM
13280]
gi|229808562|gb|EEP44340.1| hypothetical protein COLINT_02923 [Collinsella intestinalis DSM
13280]
Length = 99
Score = 46.2 bits (108), Expect = 0.10, Method: Composition-based stats.
Identities = 29/91 (31%), Positives = 44/91 (48%)
Query: 178 LKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMK 237
+ L+GK++R+LR L L + IGKA +T+ I E E++K +D L+ +
Sbjct: 1 MALTGKQVRQLRALAHHLNPVVHIGKADVTDAIAKQAEEALDAHELIKCSVQDGSLLSCR 60
Query: 238 RTHDSLERKTGGLVVWRSGSKIILYRGADYK 268
D L G VV G + LYR + K
Sbjct: 61 EAADQLAELVGAEVVQVIGHRFSLYRASSRK 91
>gi|357146986|ref|XP_003574181.1| PREDICTED: uncharacterized protein LOC100826154 [Brachypodium
distachyon]
Length = 254
Score = 46.2 bits (108), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 48/100 (48%), Gaps = 3/100 (3%)
Query: 172 VPTLAELKLSGKELRRLRTLGIGLRKKLK---IGKAGITEGIVNGIHERWRHAEVVKIVC 228
+P L KL KE + L + GL KKLK +GK G+T +V+ + E++K+
Sbjct: 88 LPRLPRPKLDVKERKELASYAHGLGKKLKSQQVGKGGVTPSLVSAFSDNLESNELLKLKI 147
Query: 229 EDLCRLNMKRTHDSLERKTGGLVVWRSGSKIILYRGADYK 268
C + LE TG + V + G +ILYR + K
Sbjct: 148 HGNCPGELPDVILQLEESTGSIAVDQIGRSVILYRPSSSK 187
>gi|228476052|ref|ZP_04060760.1| conserved hypothetical protein [Staphylococcus hominis SK119]
gi|314936285|ref|ZP_07843632.1| probable RNA-binding protein YqeI [Staphylococcus hominis subsp.
hominis C80]
gi|418619902|ref|ZP_13182713.1| RNA-binding protein, YhbY family [Staphylococcus hominis VCU122]
gi|228269875|gb|EEK11355.1| conserved hypothetical protein [Staphylococcus hominis SK119]
gi|313654904|gb|EFS18649.1| probable RNA-binding protein YqeI [Staphylococcus hominis subsp.
hominis C80]
gi|374823465|gb|EHR87460.1| RNA-binding protein, YhbY family [Staphylococcus hominis VCU122]
Length = 96
Score = 46.2 bits (108), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 48/87 (55%), Gaps = 6/87 (6%)
Query: 180 LSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRT 239
L+GK+ R LR+L + +IGKAGI + +++ I E + E++KI + + N
Sbjct: 2 LTGKQKRYLRSLAHNIDPIFQIGKAGINDNMISQIDETLENRELIKI---HILQNNFDDK 58
Query: 240 HD---SLERKTGGLVVWRSGSKIILYR 263
+D +L + T VV GS I++YR
Sbjct: 59 NDLAQTLSQATNSEVVQVIGSMIVIYR 85
>gi|95929549|ref|ZP_01312291.1| protein of unknown function UPF0044 [Desulfuromonas acetoxidans DSM
684]
gi|95134246|gb|EAT15903.1| protein of unknown function UPF0044 [Desulfuromonas acetoxidans DSM
684]
Length = 101
Score = 46.2 bits (108), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 45/84 (53%)
Query: 180 LSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRT 239
LSGK+ R LR LG L + IGK +++G+++ + E E++K+ + C ++ K
Sbjct: 6 LSGKQNRFLRGLGHHLNPVVLIGKDAVSQGVIDSVEEVLDQHELIKVKLLEGCLVDRKNV 65
Query: 240 HDSLERKTGGLVVWRSGSKIILYR 263
+ L T VV G I+L+R
Sbjct: 66 AEQLSTTTDSSVVQILGRTILLFR 89
>gi|147771494|emb|CAN73653.1| hypothetical protein VITISV_005730 [Vitis vinifera]
Length = 239
Score = 45.8 bits (107), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 53/109 (48%), Gaps = 4/109 (3%)
Query: 159 LAKNSKMNEKEKEVP-TLAELKLSGKELRRLRTLGIGLRKKLK---IGKAGITEGIVNGI 214
+AK ++ E E+ V T + L+ KE + L + L KKLK +GK G+T + +
Sbjct: 92 IAKQEELYESEETVKETSRPVNLTIKEKKELASYAHSLGKKLKCQLVGKQGVTASVASAF 151
Query: 215 HERWRHAEVVKIVCEDLCRLNMKRTHDSLERKTGGLVVWRSGSKIILYR 263
E E++KI C + LE TG +VV + G +ILYR
Sbjct: 152 IENLESNELLKIKIHGTCPGELPDVVKQLEESTGSVVVGQIGRSVILYR 200
Score = 42.4 bits (98), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 2/94 (2%)
Query: 928 NSRAIQLSNRDRLLLRKQALRM-KKRPVLAVGRSNIVTGVAKAIKAHFEKYPLAIVNVKG 986
SR + L+ +++ L A + KK VG+ + VA A + E L + + G
Sbjct: 108 TSRPVNLTIKEKKELASYAHSLGKKLKCQLVGKQGVTASVASAFIENLESNELLKIKIHG 167
Query: 987 RAKGTSVQEVVAKLEEATGAVLVSQEPSKVILYR 1020
G + +VV +LEE+TG+V+V Q VILYR
Sbjct: 168 TCPG-ELPDVVKQLEESTGSVVVGQIGRSVILYR 200
>gi|332288658|ref|YP_004419510.1| RNA-binding protein YhbY [Gallibacterium anatis UMN179]
gi|330431554|gb|AEC16613.1| RNA-binding protein YhbY [Gallibacterium anatis UMN179]
Length = 100
Score = 45.8 bits (107), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 47/89 (52%)
Query: 178 LKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMK 237
L LS K+ + L+ L L + +G G+TEG++ I H E++K+ + R +
Sbjct: 3 LTLSTKQKQYLKGLAHHLNPVVMLGGNGLTEGVIAEIDNALNHHELIKVKISGVDREEKE 62
Query: 238 RTHDSLERKTGGLVVWRSGSKIILYRGAD 266
++ER+TG V R G ++LYR +D
Sbjct: 63 LVVAAIERETGACAVQRIGHILVLYRPSD 91
>gi|283783288|ref|YP_003374042.1| RNA-binding protein, YhbY family [Gardnerella vaginalis 409-05]
gi|283441827|gb|ADB14293.1| RNA-binding protein, YhbY family [Gardnerella vaginalis 409-05]
Length = 101
Score = 45.8 bits (107), Expect = 0.13, Method: Composition-based stats.
Identities = 27/86 (31%), Positives = 47/86 (54%)
Query: 178 LKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMK 237
+ L+ K++++LR L L L +GK IT+ V E ++ E++K +D L+ K
Sbjct: 1 MALTKKQIKQLRALANTLSPLLYVGKNDITDAAVKQADETMQYHELMKCSVQDGSGLSAK 60
Query: 238 RTHDSLERKTGGLVVWRSGSKIILYR 263
D+L +K G VV G++ +L+R
Sbjct: 61 EAADALAQKLGAEVVQVIGNRFVLFR 86
>gi|150390075|ref|YP_001320124.1| hypothetical protein Amet_2308 [Alkaliphilus metalliredigens QYMF]
gi|149949937|gb|ABR48465.1| protein of unknown function UPF0044 [Alkaliphilus metalliredigens
QYMF]
Length = 113
Score = 45.8 bits (107), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 180 LSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRT 239
L+GK+ LR L G+R +IGKAGIT+ ++ + E++K+ + L+ K T
Sbjct: 17 LTGKQRSYLRKLANGIRPVTQIGKAGITDSLLEQLELTLASRELIKVSILETSLLDTKET 76
Query: 240 HDSLERKTGGLVVWRSGSKIILYRGADYKYP 270
+ + K V G+K ++YR A Y+ P
Sbjct: 77 ANEVSTKLRAEFVQAIGNKFVIYRKA-YENP 106
>gi|297243483|ref|ZP_06927415.1| RNA-binding protein (KH domain, possibly ribosomal) [Gardnerella
vaginalis AMD]
gi|415709956|ref|ZP_11463535.1| hypothetical protein CGSMWGv6420B_03834 [Gardnerella vaginalis
6420B]
gi|296888528|gb|EFH27268.1| RNA-binding protein (KH domain, possibly ribosomal) [Gardnerella
vaginalis AMD]
gi|388055958|gb|EIK78843.1| hypothetical protein CGSMWGv6420B_03834 [Gardnerella vaginalis
6420B]
Length = 101
Score = 45.8 bits (107), Expect = 0.15, Method: Composition-based stats.
Identities = 27/86 (31%), Positives = 47/86 (54%)
Query: 178 LKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMK 237
+ L+ K++++LR L L L +GK IT+ V E ++ E++K +D L+ K
Sbjct: 1 MALTKKQIKQLRALANTLSPLLYVGKNDITDAAVKQADETMQYHELMKCSVQDGSGLSAK 60
Query: 238 RTHDSLERKTGGLVVWRSGSKIILYR 263
D+L +K G VV G++ +L+R
Sbjct: 61 EAADALAQKLGAEVVQVIGNRFVLFR 86
>gi|392957243|ref|ZP_10322767.1| hypothetical protein A374_10900 [Bacillus macauensis ZFHKF-1]
gi|391876650|gb|EIT85246.1| hypothetical protein A374_10900 [Bacillus macauensis ZFHKF-1]
Length = 96
Score = 45.4 bits (106), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 42/84 (50%)
Query: 180 LSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRT 239
LSGK+ R LR++ GL+ ++GK G+ E +V I E E++K+ C N
Sbjct: 2 LSGKQKRFLRSMANGLQPIFQVGKGGVNENMVTQIAEALEVRELIKVSILQNCDENKDDV 61
Query: 240 HDSLERKTGGLVVWRSGSKIILYR 263
+L VV GS I+LY+
Sbjct: 62 ARALATGAKAQVVQVIGSVIVLYK 85
>gi|355575459|ref|ZP_09044959.1| hypothetical protein HMPREF1008_00936 [Olsenella sp. oral taxon 809
str. F0356]
gi|354817614|gb|EHF02117.1| hypothetical protein HMPREF1008_00936 [Olsenella sp. oral taxon 809
str. F0356]
Length = 99
Score = 45.1 bits (105), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 45/86 (52%)
Query: 178 LKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMK 237
++L+G+++R+LR++ L + +GKAGIT+ +V E+VK + ++
Sbjct: 1 MELTGRQIRQLRSMANRLEATIGVGKAGITDAVVRQTDSALEANELVKCSVQGTSGMDTH 60
Query: 238 RTHDSLERKTGGLVVWRSGSKIILYR 263
+L R T VV G K +LYR
Sbjct: 61 EAAIALARPTHAEVVQVIGHKFVLYR 86
>gi|449461613|ref|XP_004148536.1| PREDICTED: uncharacterized protein LOC101213060 [Cucumis sativus]
Length = 279
Score = 44.7 bits (104), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 3/87 (3%)
Query: 180 LSGKELRRLRTLGIGLRKKLK---IGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNM 236
L+ KE + L + GL KKLK +GK+G+T G+ E E++KI C +
Sbjct: 139 LTIKEKKELASYAHGLGKKLKSQLVGKSGVTPGLATSFIETLEANELLKIKILGNCPEEL 198
Query: 237 KRTHDSLERKTGGLVVWRSGSKIILYR 263
+ L TG +VV + G +I+YR
Sbjct: 199 EDVVRKLAESTGSVVVNQIGRTVIIYR 225
>gi|433462860|ref|ZP_20420431.1| RNA-binding protein YqeI [Halobacillus sp. BAB-2008]
gi|432188316|gb|ELK45520.1| RNA-binding protein YqeI [Halobacillus sp. BAB-2008]
Length = 96
Score = 44.7 bits (104), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 46/87 (52%)
Query: 180 LSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRT 239
L+ K+ + LRT+ ++ ++GKAG+ E + I E E++K+ C + ++
Sbjct: 2 LTSKQKKHLRTISHPIQPIFQVGKAGVNENMTVQISEALEKRELIKVSILQNCFEDNRQV 61
Query: 240 HDSLERKTGGLVVWRSGSKIILYRGAD 266
D + TG +V G+ IILY+ ++
Sbjct: 62 ADEIVEATGAELVQMIGNTIILYKESE 88
>gi|449515613|ref|XP_004164843.1| PREDICTED: uncharacterized protein LOC101225856 [Cucumis sativus]
Length = 279
Score = 44.7 bits (104), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 3/87 (3%)
Query: 180 LSGKELRRLRTLGIGLRKKLK---IGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNM 236
L+ KE + L + GL KKLK +GK+G+T G+ E E++KI C +
Sbjct: 139 LTIKEKKELASYAHGLGKKLKSQLVGKSGVTPGLATSFIETLEANELLKIKILGNCPEEL 198
Query: 237 KRTHDSLERKTGGLVVWRSGSKIILYR 263
+ L TG +VV + G +I+YR
Sbjct: 199 EDVVRKLAESTGSVVVNQIGRTVIIYR 225
>gi|346311378|ref|ZP_08853384.1| hypothetical protein HMPREF9452_01253 [Collinsella tanakaei YIT
12063]
gi|345900994|gb|EGX70805.1| hypothetical protein HMPREF9452_01253 [Collinsella tanakaei YIT
12063]
Length = 99
Score = 44.7 bits (104), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 43/86 (50%)
Query: 178 LKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMK 237
+ L+GK++R+LR+L L + IGK IT+ +V + E++K +D L +
Sbjct: 1 MALTGKQVRQLRSLAHHLNPIIHIGKFDITDALVKETEAALENRELIKCAVQDGSDLEAR 60
Query: 238 RTHDSLERKTGGLVVWRSGSKIILYR 263
D L +T VV G + LYR
Sbjct: 61 EAADMLAERTNADVVQVIGHRFSLYR 86
>gi|415729435|ref|ZP_11472461.1| hypothetical protein CGSMWGv6119V5_05041 [Gardnerella vaginalis
6119V5]
gi|388064469|gb|EIK87003.1| hypothetical protein CGSMWGv6119V5_05041 [Gardnerella vaginalis
6119V5]
Length = 101
Score = 44.7 bits (104), Expect = 0.32, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 47/86 (54%)
Query: 178 LKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMK 237
+ L+ K++++LR L L L +GK IT+ V E ++ E++K +D L+ K
Sbjct: 1 MALTKKQIKQLRALANTLSPLLYVGKNDITDAAVKQADETMQYHELMKCAVQDGSGLSSK 60
Query: 238 RTHDSLERKTGGLVVWRSGSKIILYR 263
++L +K G VV G++ +L+R
Sbjct: 61 EAAEALAQKLGAEVVQVIGNRFVLFR 86
>gi|223936883|ref|ZP_03628792.1| protein of unknown function UPF0044 [bacterium Ellin514]
gi|223894452|gb|EEF60904.1| protein of unknown function UPF0044 [bacterium Ellin514]
Length = 85
Score = 44.3 bits (103), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 199 LKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRTHDSLERKTGGLVVWRSGSK 258
LK+GKAG++E + + E H E+VKI D + K L KT +V R G+
Sbjct: 5 LKVGKAGLSEAFLKSVDEALAHHELVKIKFADF-KEEKKTLSPQLAEKTSSHLVMRVGNV 63
Query: 259 IILYR 263
++LYR
Sbjct: 64 VVLYR 68
>gi|336449998|ref|ZP_08620455.1| putative RNA-binding protein, YhbY family [Idiomarina sp. A28L]
gi|336283155|gb|EGN76362.1| putative RNA-binding protein, YhbY family [Idiomarina sp. A28L]
Length = 97
Score = 44.3 bits (103), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 49/88 (55%)
Query: 178 LKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMK 237
++LS K+ + L+ L L+ + +G G+TEG++ I H E++KI + R +
Sbjct: 1 MQLSNKQKQFLKGLAHPLKPVVLLGGNGLTEGVLAEIELALEHHELIKIKVPEEDREMRQ 60
Query: 238 RTHDSLERKTGGLVVWRSGSKIILYRGA 265
+D++ R+T G+ V G ++LYR A
Sbjct: 61 AIYDAIVRETAGVQVQVIGKTLVLYRPA 88
>gi|258645346|ref|ZP_05732815.1| RNA-binding protein YhbY [Dialister invisus DSM 15470]
gi|260402695|gb|EEW96242.1| RNA-binding protein YhbY [Dialister invisus DSM 15470]
Length = 96
Score = 44.3 bits (103), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 48/94 (51%)
Query: 180 LSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRT 239
L+GK+ + L++ + ++IGK GIT+ ++N + E E++K+ N+++
Sbjct: 2 LTGKQKQYLKSTAVDFSAVVQIGKEGITDNVINSVTEALAARELIKVKINQNSAENIRKA 61
Query: 240 HDSLERKTGGLVVWRSGSKIILYRGADYKYPYFL 273
L ++G +V G IL++ D K Y L
Sbjct: 62 AKLLSEESGCEIVQIIGRNCILFKQKDKKSHYDL 95
>gi|39996365|ref|NP_952316.1| RNA-binding protein YhbY [Geobacter sulfurreducens PCA]
gi|39983245|gb|AAR34639.1| RNA-binding protein YhbY [Geobacter sulfurreducens PCA]
Length = 98
Score = 43.9 bits (102), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 41/86 (47%)
Query: 180 LSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRT 239
L+GK+ R LR LG L + IGK I+E +V E H E++K+ + C L+
Sbjct: 2 LTGKQKRHLRGLGHSLAPVITIGKGEISEALVKETDEALEHHELIKVKILESCLLDRHEA 61
Query: 240 HDSLERKTGGLVVWRSGSKIILYRGA 265
+ L G V G +L+R A
Sbjct: 62 AEELASACGAEVAQVLGRTFLLFRRA 87
>gi|312622633|ref|YP_004024246.1| hypothetical protein Calkro_1574 [Caldicellulosiruptor
kronotskyensis 2002]
gi|312203100|gb|ADQ46427.1| protein of unknown function UPF0044 [Caldicellulosiruptor
kronotskyensis 2002]
Length = 95
Score = 43.9 bits (102), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 44/87 (50%)
Query: 180 LSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRT 239
L+ K+ +LR + + ++IGK GITEG++ I E E++KI E C N K
Sbjct: 2 LTSKQRAKLRGMANTMDAIIRIGKEGITEGVLKQIDEALSARELIKIALEKNCDKNPKEA 61
Query: 240 HDSLERKTGGLVVWRSGSKIILYRGAD 266
+ K V G KI++YR A+
Sbjct: 62 IVYICEKLNAEPVQVIGRKIVIYRMAE 88
>gi|335040464|ref|ZP_08533592.1| RNA-binding, CRM domain containing protein [Caldalkalibacillus
thermarum TA2.A1]
gi|334179653|gb|EGL82290.1| RNA-binding, CRM domain containing protein [Caldalkalibacillus
thermarum TA2.A1]
Length = 96
Score = 43.9 bits (102), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 44/84 (52%)
Query: 180 LSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRT 239
L+GK+ R LR+L L ++GK G+ + ++ I + + E++K+ C +
Sbjct: 2 LTGKQKRYLRSLAHHLNPIFQVGKGGVNDNMLQQIKDALKARELIKVSVLQNCEQDKHEV 61
Query: 240 HDSLERKTGGLVVWRSGSKIILYR 263
+ L + TG +V G +I+LY+
Sbjct: 62 AEELAKGTGAELVQVIGKQIVLYK 85
>gi|239637594|ref|ZP_04678566.1| conserved hypothetical protein [Staphylococcus warneri L37603]
gi|239596812|gb|EEQ79337.1| conserved hypothetical protein [Staphylococcus warneri L37603]
Length = 96
Score = 43.9 bits (102), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 40/84 (47%)
Query: 180 LSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRT 239
L+GK+ R LR+L +IGK GI E +VN I E E++KI +
Sbjct: 2 LTGKQKRYLRSLAHNTDPTFQIGKGGINENMVNQIDETLEKRELIKIHVLQNNFDDKNEL 61
Query: 240 HDSLERKTGGLVVWRSGSKIILYR 263
+L T VV GS I+LYR
Sbjct: 62 ATTLGEATNSEVVQVIGSMIVLYR 85
>gi|339443333|ref|YP_004709338.1| hypothetical protein CXIVA_22690 [Clostridium sp. SY8519]
gi|338902734|dbj|BAK48236.1| hypothetical protein CXIVA_22690 [Clostridium sp. SY8519]
Length = 97
Score = 43.5 bits (101), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 44/84 (52%)
Query: 180 LSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRT 239
++ K+ LR+L + L +IGK+ +T +V + E + E++KI C + ++
Sbjct: 1 MTSKQRAYLRSLAMNLTPLFQIGKSSLTPELVTAVTEGFHTHELIKITVLKNCMEDPRKI 60
Query: 240 HDSLERKTGGLVVWRSGSKIILYR 263
+ L +T VV G KIILYR
Sbjct: 61 AEMLAGRTRSEVVQVIGRKIILYR 84
>gi|15234935|ref|NP_195615.1| putative RNA-binding protein containing KH domain protein
[Arabidopsis thaliana]
gi|4539323|emb|CAB38824.1| putative protein [Arabidopsis thaliana]
gi|7270887|emb|CAB80567.1| putative protein [Arabidopsis thaliana]
gi|26452052|dbj|BAC43116.1| unknown protein [Arabidopsis thaliana]
gi|28950859|gb|AAO63353.1| At4g39040 [Arabidopsis thaliana]
gi|332661610|gb|AEE87010.1| putative RNA-binding protein containing KH domain protein
[Arabidopsis thaliana]
Length = 296
Score = 43.5 bits (101), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 3/89 (3%)
Query: 178 LKLSGKELRRLRTLGIGLRKKLK---IGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRL 234
LKLS KE + L + L KLK +GK+G+T+ +V E E++K+
Sbjct: 151 LKLSIKEKKELASYAHSLGDKLKCQLVGKSGVTDSVVFSFLETLEKNELLKVKIRKTSPD 210
Query: 235 NMKRTHDSLERKTGGLVVWRSGSKIILYR 263
++ LE TG + V + G +ILYR
Sbjct: 211 ELEDAVQHLEEATGSVAVGQIGRTVILYR 239
>gi|403379142|ref|ZP_10921199.1| hypothetical protein PJC66_04868 [Paenibacillus sp. JC66]
Length = 96
Score = 43.5 bits (101), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 6/87 (6%)
Query: 180 LSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRT 239
L+ K+ + LR+L L ++GK G+ E ++ I E E++KI + C M+
Sbjct: 2 LTNKQKKFLRSLAHSLNPIFQVGKGGVNEAMITSISEALEVRELIKISVLNNC---MEDK 58
Query: 240 HD---SLERKTGGLVVWRSGSKIILYR 263
HD L TG VV G+ I+LY+
Sbjct: 59 HDIAAQLSEGTGAEVVQVIGNIIVLYK 85
>gi|409911800|ref|YP_006890265.1| RNA-binding protein YhbY [Geobacter sulfurreducens KN400]
gi|298505375|gb|ADI84098.1| RNA-binding protein YhbY [Geobacter sulfurreducens KN400]
Length = 98
Score = 43.5 bits (101), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 41/86 (47%)
Query: 180 LSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRT 239
L+GK+ R LR LG L + IGK I+E +V E H E++K+ + C L+
Sbjct: 2 LTGKQKRHLRGLGHSLAPVITIGKGEISEALVRETDEALEHHELIKVKILESCLLDRHEA 61
Query: 240 HDSLERKTGGLVVWRSGSKIILYRGA 265
+ L G V G +L+R A
Sbjct: 62 AEELASACGADVAQVLGRTFLLFRRA 87
>gi|158320778|ref|YP_001513285.1| hypothetical protein Clos_1749 [Alkaliphilus oremlandii OhILAs]
gi|158140977|gb|ABW19289.1| protein of unknown function UPF0044 [Alkaliphilus oremlandii
OhILAs]
Length = 98
Score = 43.5 bits (101), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 44/84 (52%)
Query: 180 LSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRT 239
L+GK+ L+++ GL+ +IGK+GIT+ + + E+VK+ + L K T
Sbjct: 2 LTGKQRSYLKSIANGLKPITQIGKSGITDAFLEQLDLALNSREIVKVTILETSLLETKET 61
Query: 240 HDSLERKTGGLVVWRSGSKIILYR 263
+ + +K V G+K ++YR
Sbjct: 62 ANEVAQKVRAEFVQAIGNKFVIYR 85
>gi|240254502|ref|NP_179731.4| RNA-binding CRS1 / YhbY (CRM) domain protein [Arabidopsis thaliana]
gi|330252071|gb|AEC07165.1| RNA-binding CRS1 / YhbY (CRM) domain protein [Arabidopsis thaliana]
Length = 222
Score = 43.5 bits (101), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 3/94 (3%)
Query: 178 LKLSGKELRRLRTLGIGLRKKLK---IGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRL 234
L+LS KE R+L + L KLK +GK+G+T+ +V E E++K+ C
Sbjct: 117 LELSAKEKRKLASYAHHLGDKLKSQLVGKSGVTDSVVLSFVETLEKNELLKVKIHRTCPG 176
Query: 235 NMKRTHDSLERKTGGLVVWRSGSKIILYRGADYK 268
++ LE TG + V + +ILYR + K
Sbjct: 177 ELEDMILRLEEATGSVSVGQIARTVILYRPSPTK 210
>gi|357473479|ref|XP_003607024.1| CRS1 / YhbY domain containing protein [Medicago truncatula]
gi|355508079|gb|AES89221.1| CRS1 / YhbY domain containing protein [Medicago truncatula]
Length = 285
Score = 43.5 bits (101), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 51/105 (48%), Gaps = 9/105 (8%)
Query: 163 SKMNEKEK-EVPTLAELKLSGKELRRLRTLGIGLRKKLK---IGKAGITEGIVNGIHERW 218
SK E+ K EVP+L S KE + L + L KKL +GK+G+T +V +
Sbjct: 132 SKREERLKLEVPSL-----SVKERKELGSYAHSLGKKLSTQLVGKSGVTPNLVTAFSDNL 186
Query: 219 RHAEVVKIVCEDLCRLNMKRTHDSLERKTGGLVVWRSGSKIILYR 263
E++KI C ++ LE TG + V + G +ILYR
Sbjct: 187 EANELLKIKIHGSCPGELEDVVKQLEESTGSVTVGQIGRTLILYR 231
>gi|386714889|ref|YP_006181212.1| RNA-binding protein YqeI [Halobacillus halophilus DSM 2266]
gi|384074445|emb|CCG45938.1| probable RNA-binding protein YqeI [Halobacillus halophilus DSM
2266]
Length = 96
Score = 43.5 bits (101), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 42/84 (50%)
Query: 180 LSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRT 239
L+ K+ + LR ++ ++GKAG+ E + + E E++K+ C + K
Sbjct: 2 LTSKQKKHLRAESHHVQPIFQVGKAGVNENMTTQMEEALEKRELIKVSILQNCFEDNKEV 61
Query: 240 HDSLERKTGGLVVWRSGSKIILYR 263
D + + TG +V G+ IILY+
Sbjct: 62 ADQIAKSTGAQIVQVIGNTIILYK 85
>gi|384123834|ref|YP_005506454.1| hypothetical protein YPD4_3247 [Yersinia pestis D106004]
gi|262363430|gb|ACY60151.1| hypothetical protein YPD4_3247 [Yersinia pestis D106004]
Length = 129
Score = 43.5 bits (101), Expect = 0.74, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 48/88 (54%)
Query: 178 LKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMK 237
+ L+ K+ + L++L L+ + +G G+TEG++ I + H E++K+ R
Sbjct: 1 MNLNNKQKQHLKSLAHPLKPVVMLGNNGLTEGVLAEIEQTLAHHELIKVKITAEERETKA 60
Query: 238 RTHDSLERKTGGLVVWRSGSKIILYRGA 265
D++ R+TG + V G+ ++LYR A
Sbjct: 61 LIADAIVRETGAVNVQMIGNILVLYRPA 88
>gi|445059506|ref|YP_007384910.1| RNA binding protein [Staphylococcus warneri SG1]
gi|443425563|gb|AGC90466.1| RNA binding protein [Staphylococcus warneri SG1]
Length = 96
Score = 43.1 bits (100), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 40/84 (47%)
Query: 180 LSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRT 239
L+GK+ R LR+L +IGK GI E +VN I E E++KI +
Sbjct: 2 LTGKQKRYLRSLAHNTDPTFQIGKGGINENMVNQIDETLEKRELIKIHVLQNNFDDKNEL 61
Query: 240 HDSLERKTGGLVVWRSGSKIILYR 263
+L T +V GS I+LYR
Sbjct: 62 ATTLSEATNCEIVQVIGSMIVLYR 85
>gi|415726979|ref|ZP_11471207.1| hypothetical protein CGSMWGv00703Dmash_04579 [Gardnerella vaginalis
00703Dmash]
gi|388062708|gb|EIK85313.1| hypothetical protein CGSMWGv00703Dmash_04579 [Gardnerella vaginalis
00703Dmash]
Length = 101
Score = 43.1 bits (100), Expect = 0.77, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 46/86 (53%)
Query: 178 LKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMK 237
+ L+ K+ ++LR L L L +GK IT+ V E ++ E++K +D L+ K
Sbjct: 1 MALTKKQTKQLRALANTLSPLLYVGKNDITDAAVKQADETMQYHELMKCAVQDGSGLSAK 60
Query: 238 RTHDSLERKTGGLVVWRSGSKIILYR 263
++L +K G VV G++ +L+R
Sbjct: 61 EAAETLAQKLGAEVVQVIGNRFVLFR 86
>gi|37528356|ref|NP_931701.1| hypothetical protein plu4537 [Photorhabdus luminescens subsp.
laumondii TTO1]
gi|36787794|emb|CAE16909.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
TTO1]
Length = 97
Score = 43.1 bits (100), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 48/89 (53%)
Query: 178 LKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMK 237
+ L+ K+++ L++L L+ + IG G+TEG++ I + H E++K+ R
Sbjct: 1 MALNKKQVQHLKSLAHPLKPVVMIGNNGLTEGVLAEIEQTLSHHELIKVKIAGEDRETKN 60
Query: 238 RTHDSLERKTGGLVVWRSGSKIILYRGAD 266
D++ R+TG V G ++LYR ++
Sbjct: 61 LIADAIVRETGAYNVQVIGKTLVLYRQSE 89
>gi|157368728|ref|YP_001476717.1| hypothetical protein Spro_0481 [Serratia proteamaculans 568]
gi|270265051|ref|ZP_06193314.1| hypothetical protein SOD_k00870 [Serratia odorifera 4Rx13]
gi|293393161|ref|ZP_06637476.1| RNA-binding protein YhbY [Serratia odorifera DSM 4582]
gi|333925307|ref|YP_004498886.1| RNA-binding, CRM domain-containing protein [Serratia sp. AS12]
gi|333930260|ref|YP_004503838.1| RNA-binding, CRM domain-containing protein [Serratia plymuthica
AS9]
gi|386327131|ref|YP_006023301.1| RNA-binding, CRM domain-containing protein [Serratia sp. AS13]
gi|386823046|ref|ZP_10110204.1| RNA-binding, CRM domain-containing protein [Serratia plymuthica
PRI-2C]
gi|421781333|ref|ZP_16217800.1| RNA-binding protein, YhbY family [Serratia plymuthica A30]
gi|448240196|ref|YP_007404249.1| RNA-binding protein YhbY [Serratia marcescens WW4]
gi|157320492|gb|ABV39589.1| protein of unknown function UPF0044 [Serratia proteamaculans 568]
gi|270040985|gb|EFA14086.1| hypothetical protein SOD_k00870 [Serratia odorifera 4Rx13]
gi|291424307|gb|EFE97521.1| RNA-binding protein YhbY [Serratia odorifera DSM 4582]
gi|333471867|gb|AEF43577.1| RNA-binding, CRM domain protein [Serratia plymuthica AS9]
gi|333489367|gb|AEF48529.1| RNA-binding, CRM domain protein [Serratia sp. AS12]
gi|333959464|gb|AEG26237.1| RNA-binding, CRM domain protein [Serratia sp. AS13]
gi|386380102|gb|EIJ20881.1| RNA-binding, CRM domain-containing protein [Serratia plymuthica
PRI-2C]
gi|407756542|gb|EKF66658.1| RNA-binding protein, YhbY family [Serratia plymuthica A30]
gi|445210560|gb|AGE16230.1| RNA-binding protein YhbY [Serratia marcescens WW4]
gi|453065006|gb|EMF05970.1| RNA-binding, CRM domain-containing protein [Serratia marcescens
VGH107]
Length = 97
Score = 43.1 bits (100), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Query: 178 LKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEV--VKIVCEDLCRLN 235
+ L+ K+ + L+ L L+ + +G G+TEG++ I + H E+ VKI ED R
Sbjct: 1 MNLNNKQKQHLKGLAHPLKPVVMLGNNGLTEGVLAEIEQALEHHELIKVKIAAED--RET 58
Query: 236 MKRTHDSLERKTGGLVVWRSGSKIILYR 263
D++ R+TG V GS +ILYR
Sbjct: 59 KTLIADAIVRETGACNVQVIGSTLILYR 86
>gi|388496390|gb|AFK36261.1| unknown [Lotus japonicus]
Length = 282
Score = 43.1 bits (100), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 50/105 (47%), Gaps = 3/105 (2%)
Query: 162 NSKMNEKEKEVPTLAELKLSGKELRRLRTLGIGLRKKLK---IGKAGITEGIVNGIHERW 218
+S + EK KE L L+ KE + L + L KKLK +GK+G+T + E
Sbjct: 154 SSPLVEKRKERLKLEVPSLTVKEKKELASFAHSLWKKLKSQLVGKSGVTSNLATSFIETL 213
Query: 219 RHAEVVKIVCEDLCRLNMKRTHDSLERKTGGLVVWRSGSKIILYR 263
E++KI C ++ LE TG + V + G +I+Y+
Sbjct: 214 EANELLKIKVHRTCPGELEDAVKQLEELTGSVTVSQIGRTLIIYK 258
>gi|30692165|ref|NP_849521.1| putative RNA-binding protein containing KH domain protein
[Arabidopsis thaliana]
gi|332661611|gb|AEE87011.1| putative RNA-binding protein containing KH domain protein
[Arabidopsis thaliana]
Length = 280
Score = 43.1 bits (100), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 3/89 (3%)
Query: 178 LKLSGKELRRLRTLGIGLRKKLK---IGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRL 234
LKLS KE + L + L KLK +GK+G+T+ +V E E++K+
Sbjct: 151 LKLSIKEKKELASYAHSLGDKLKCQLVGKSGVTDSVVFSFLETLEKNELLKVKIRKTSPD 210
Query: 235 NMKRTHDSLERKTGGLVVWRSGSKIILYR 263
++ LE TG + V + G +ILYR
Sbjct: 211 ELEDAVQHLEEATGSVAVGQIGRTVILYR 239
>gi|312134966|ref|YP_004002304.1| hypothetical protein Calow_0938 [Caldicellulosiruptor owensensis
OL]
gi|311775017|gb|ADQ04504.1| protein of unknown function UPF0044 [Caldicellulosiruptor
owensensis OL]
Length = 95
Score = 43.1 bits (100), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 45/87 (51%)
Query: 180 LSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRT 239
L+ K+ RLR++ + ++IGK GITE ++ I E E++KI E C + K+
Sbjct: 2 LTSKQRARLRSMANTMDAIVRIGKEGITERVLKQIDEALSARELIKIALEKNCEIEPKQA 61
Query: 240 HDSLERKTGGLVVWRSGSKIILYRGAD 266
+ K V G KI++YR ++
Sbjct: 62 IAHICEKLNAEPVQVIGRKIVIYRMSE 88
>gi|404496625|ref|YP_006720731.1| RNA-binding protein YhbY [Geobacter metallireducens GS-15]
gi|418066704|ref|ZP_12704063.1| protein of unknown function UPF0044 [Geobacter metallireducens
RCH3]
gi|373560017|gb|EHP86293.1| protein of unknown function UPF0044 [Geobacter metallireducens
RCH3]
gi|403378063|gb|ABB31995.2| RNA-binding protein YhbY [Geobacter metallireducens GS-15]
Length = 98
Score = 42.7 bits (99), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 42/87 (48%)
Query: 180 LSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRT 239
L+GK+ R LR +G L + +GK I+ +V E H E++K+ + C ++
Sbjct: 2 LTGKQKRFLRGMGHSLNPVITVGKGEISTPLVRETSEALEHHELIKVKILESCIMDRHEV 61
Query: 240 HDSLERKTGGLVVWRSGSKIILYRGAD 266
D L + G V G +LYR A+
Sbjct: 62 ADELAKACGAEVAQVLGRTFLLYRKAE 88
>gi|222529115|ref|YP_002572997.1| hypothetical protein Athe_1123 [Caldicellulosiruptor bescii DSM
6725]
gi|312127821|ref|YP_003992695.1| hypothetical protein Calhy_1611 [Caldicellulosiruptor
hydrothermalis 108]
gi|222455962|gb|ACM60224.1| protein of unknown function UPF0044 [Caldicellulosiruptor bescii
DSM 6725]
gi|311777840|gb|ADQ07326.1| protein of unknown function UPF0044 [Caldicellulosiruptor
hydrothermalis 108]
Length = 95
Score = 42.7 bits (99), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 44/87 (50%)
Query: 180 LSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRT 239
L+ K+ +LR + + ++IGK GITEG++ I E E++KI E C + K
Sbjct: 2 LTSKQRAKLRGMANTMDAIIRIGKEGITEGVLKQIDEALTARELIKIALEKNCEIEPKEA 61
Query: 240 HDSLERKTGGLVVWRSGSKIILYRGAD 266
+ K V G KI++YR ++
Sbjct: 62 IAYICEKLNAEPVQVIGRKIVIYRMSE 88
>gi|414884471|tpg|DAA60485.1| TPA: hypothetical protein ZEAMMB73_919812, partial [Zea mays]
Length = 250
Score = 42.7 bits (99), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 35/65 (53%)
Query: 180 LSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRT 239
L+ +E+ L + +++L +G+ G+T ++ IH W+ V KI C+ +C ++M
Sbjct: 185 LTKEEVSELVKGSLKSKRQLNMGRDGLTHNMLENIHSHWKRKRVCKIKCKGVCTIDMDNI 244
Query: 240 HDSLE 244
LE
Sbjct: 245 CHQLE 249
Score = 41.2 bits (95), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 30/52 (57%)
Query: 592 EGITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVENMHLHWKHRELVKIISK 643
E +T+EE L K L+ K L MGR G+ +EN+H HWK + + KI K
Sbjct: 183 EPLTKEEVSELVKGSLKSKRQLNMGRDGLTHNMLENIHSHWKRKRVCKIKCK 234
>gi|225019240|ref|ZP_03708432.1| hypothetical protein CLOSTMETH_03193 [Clostridium methylpentosum
DSM 5476]
gi|224947871|gb|EEG29080.1| hypothetical protein CLOSTMETH_03193 [Clostridium methylpentosum
DSM 5476]
Length = 95
Score = 42.7 bits (99), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 44/84 (52%)
Query: 180 LSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRT 239
++ K+ +LR++ L ++IGK GIT+ +V I E E++K+ + L +
Sbjct: 2 ITSKQRAKLRSMANELPTTIQIGKNGITDEVVAQIREAILPNELIKLRVLETAMLTAREA 61
Query: 240 HDSLERKTGGLVVWRSGSKIILYR 263
S+ TG +V G++ +LY+
Sbjct: 62 AQSIAEATGAEIVQVIGTRFVLYQ 85
>gi|357443457|ref|XP_003592006.1| hypothetical protein MTR_1g097730 [Medicago truncatula]
gi|357443499|ref|XP_003592027.1| hypothetical protein MTR_1g097960 [Medicago truncatula]
gi|355481054|gb|AES62257.1| hypothetical protein MTR_1g097730 [Medicago truncatula]
gi|355481075|gb|AES62278.1| hypothetical protein MTR_1g097960 [Medicago truncatula]
Length = 56
Score = 42.7 bits (99), Expect = 1.2, Method: Composition-based stats.
Identities = 24/52 (46%), Positives = 29/52 (55%), Gaps = 7/52 (13%)
Query: 349 EADRLLDGLGPRFTDWWGYDPQPVDADLLPATVPGYRRPFRLLPYGVQPKLT 400
E + LLD LGPRF D + D LPA VP Y+ F+LLPY V L+
Sbjct: 5 ELNLLLDELGPRFKDL-------ILLDQLPAVVPRYKTSFKLLPYEVNSCLS 49
>gi|402300003|ref|ZP_10819556.1| hypothetical protein BalcAV_13098 [Bacillus alcalophilus ATCC
27647]
gi|401724794|gb|EJS98123.1| hypothetical protein BalcAV_13098 [Bacillus alcalophilus ATCC
27647]
Length = 96
Score = 42.7 bits (99), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 41/84 (48%)
Query: 180 LSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRT 239
L+GK+ R LR+ L ++GK G+ E +V I E E++K+ C + +
Sbjct: 2 LTGKQKRFLRSKAHHLNPIFQVGKGGVNENMVQQISEALEVRELIKVSVLQNCEYDKQEV 61
Query: 240 HDSLERKTGGLVVWRSGSKIILYR 263
D + T +V G+ I+LYR
Sbjct: 62 ADDIATGTKADIVQIIGNTIVLYR 85
>gi|22124594|ref|NP_668017.1| hypothetical protein y0680 [Yersinia pestis KIM10+]
gi|45440433|ref|NP_991972.1| RNA-binding protein [Yersinia pestis biovar Microtus str. 91001]
gi|51594824|ref|YP_069015.1| hypothetical protein YPTB0472 [Yersinia pseudotuberculosis IP
32953]
gi|108806052|ref|YP_649968.1| hypothetical protein YPA_0054 [Yersinia pestis Antiqua]
gi|108813408|ref|YP_649175.1| hypothetical protein YPN_3248 [Yersinia pestis Nepal516]
gi|145600800|ref|YP_001164876.1| hypothetical protein YPDSF_3553 [Yersinia pestis Pestoides F]
gi|153947563|ref|YP_001402558.1| hypothetical protein YpsIP31758_3604 [Yersinia pseudotuberculosis
IP 31758]
gi|153997281|ref|ZP_02022381.1| hypothetical protein YPE_3725 [Yersinia pestis CA88-4125]
gi|162420347|ref|YP_001608278.1| hypothetical protein YpAngola_A3983 [Yersinia pestis Angola]
gi|165928184|ref|ZP_02224016.1| conserved hypothetical protein TIGR00253 [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165937407|ref|ZP_02225970.1| conserved hypothetical protein TIGR00253 [Yersinia pestis biovar
Orientalis str. IP275]
gi|166011415|ref|ZP_02232313.1| conserved hypothetical protein TIGR00253 [Yersinia pestis biovar
Antiqua str. E1979001]
gi|166213973|ref|ZP_02240008.1| conserved hypothetical protein TIGR00253 [Yersinia pestis biovar
Antiqua str. B42003004]
gi|167401325|ref|ZP_02306825.1| conserved hypothetical protein TIGR00253 [Yersinia pestis biovar
Antiqua str. UG05-0454]
gi|167420615|ref|ZP_02312368.1| conserved hypothetical protein TIGR00253 [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167423443|ref|ZP_02315196.1| conserved hypothetical protein TIGR00253 [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|167470194|ref|ZP_02334898.1| hypothetical protein YpesF_20455 [Yersinia pestis FV-1]
gi|170025953|ref|YP_001722458.1| hypothetical protein YPK_3738 [Yersinia pseudotuberculosis YPIII]
gi|186893833|ref|YP_001870945.1| hypothetical protein YPTS_0502 [Yersinia pseudotuberculosis PB1/+]
gi|218930518|ref|YP_002348393.1| hypothetical protein YPO3504 [Yersinia pestis CO92]
gi|229839156|ref|ZP_04459315.1| predicted RNA-binding protein [Yersinia pestis biovar Orientalis
str. PEXU2]
gi|229896645|ref|ZP_04511812.1| predicted RNA-binding protein [Yersinia pestis Pestoides A]
gi|229899720|ref|ZP_04514861.1| predicted RNA-binding protein [Yersinia pestis biovar Orientalis
str. India 195]
gi|229903882|ref|ZP_04518995.1| predicted RNA-binding protein [Yersinia pestis Nepal516]
gi|270489128|ref|ZP_06206202.1| RNA-binding protein, YhbY family [Yersinia pestis KIM D27]
gi|384138645|ref|YP_005521347.1| hypothetical protein A1122_08380 [Yersinia pestis A1122]
gi|384413203|ref|YP_005622565.1| putative RNA-binding protein [Yersinia pestis biovar Medievalis
str. Harbin 35]
gi|420548662|ref|ZP_15046454.1| RNA-binding protein YhbY [Yersinia pestis PY-01]
gi|420553986|ref|ZP_15051201.1| RNA-binding protein YhbY [Yersinia pestis PY-02]
gi|420559589|ref|ZP_15056070.1| RNA-binding protein YhbY [Yersinia pestis PY-03]
gi|420564971|ref|ZP_15060906.1| RNA-binding protein YhbY [Yersinia pestis PY-04]
gi|420570015|ref|ZP_15065488.1| RNA-binding protein YhbY [Yersinia pestis PY-05]
gi|420575677|ref|ZP_15070609.1| RNA-binding protein YhbY [Yersinia pestis PY-06]
gi|420581012|ref|ZP_15075464.1| RNA-binding protein YhbY [Yersinia pestis PY-07]
gi|420586355|ref|ZP_15080298.1| RNA-binding protein YhbY [Yersinia pestis PY-08]
gi|420591459|ref|ZP_15084890.1| RNA-binding protein YhbY [Yersinia pestis PY-09]
gi|420596846|ref|ZP_15089732.1| RNA-binding protein YhbY [Yersinia pestis PY-10]
gi|420602525|ref|ZP_15094777.1| RNA-binding protein YhbY [Yersinia pestis PY-11]
gi|420607917|ref|ZP_15099664.1| RNA-binding protein YhbY [Yersinia pestis PY-12]
gi|420613344|ref|ZP_15104530.1| RNA-binding protein YhbY [Yersinia pestis PY-13]
gi|420618692|ref|ZP_15109191.1| CRS1 / YhbY domain protein [Yersinia pestis PY-14]
gi|420624027|ref|ZP_15113999.1| RNA-binding protein YhbY [Yersinia pestis PY-15]
gi|420629000|ref|ZP_15118510.1| RNA-binding protein YhbY [Yersinia pestis PY-16]
gi|420634205|ref|ZP_15123175.1| RNA-binding protein YhbY [Yersinia pestis PY-19]
gi|420639425|ref|ZP_15127872.1| RNA-binding protein YhbY [Yersinia pestis PY-25]
gi|420644884|ref|ZP_15132862.1| RNA-binding protein YhbY [Yersinia pestis PY-29]
gi|420650187|ref|ZP_15137642.1| RNA-binding protein YhbY [Yersinia pestis PY-32]
gi|420655798|ref|ZP_15142688.1| RNA-binding protein YhbY [Yersinia pestis PY-34]
gi|420661248|ref|ZP_15147559.1| RNA-binding protein YhbY [Yersinia pestis PY-36]
gi|420666600|ref|ZP_15152382.1| RNA-binding protein YhbY [Yersinia pestis PY-42]
gi|420671469|ref|ZP_15156823.1| CRS1 / YhbY domain protein [Yersinia pestis PY-45]
gi|420676812|ref|ZP_15161678.1| RNA-binding protein YhbY [Yersinia pestis PY-46]
gi|420682360|ref|ZP_15166686.1| RNA-binding protein YhbY [Yersinia pestis PY-47]
gi|420687772|ref|ZP_15171501.1| RNA-binding protein YhbY [Yersinia pestis PY-48]
gi|420693012|ref|ZP_15176091.1| RNA-binding protein YhbY [Yersinia pestis PY-52]
gi|420698781|ref|ZP_15181177.1| RNA-binding protein YhbY [Yersinia pestis PY-53]
gi|420704630|ref|ZP_15185803.1| CRS1 / YhbY domain protein [Yersinia pestis PY-54]
gi|420709925|ref|ZP_15190530.1| RNA-binding protein YhbY [Yersinia pestis PY-55]
gi|420715415|ref|ZP_15195405.1| RNA-binding protein YhbY [Yersinia pestis PY-56]
gi|420720937|ref|ZP_15200131.1| RNA-binding protein YhbY [Yersinia pestis PY-58]
gi|420726397|ref|ZP_15204946.1| RNA-binding protein YhbY [Yersinia pestis PY-59]
gi|420731905|ref|ZP_15209896.1| RNA-binding protein YhbY [Yersinia pestis PY-60]
gi|420736896|ref|ZP_15214407.1| RNA-binding protein YhbY [Yersinia pestis PY-61]
gi|420742383|ref|ZP_15219336.1| RNA-binding protein YhbY [Yersinia pestis PY-63]
gi|420748231|ref|ZP_15224266.1| RNA-binding protein YhbY [Yersinia pestis PY-64]
gi|420753517|ref|ZP_15229005.1| RNA-binding protein YhbY [Yersinia pestis PY-65]
gi|420759456|ref|ZP_15233770.1| RNA-binding protein YhbY [Yersinia pestis PY-66]
gi|420764682|ref|ZP_15238388.1| RNA-binding protein YhbY [Yersinia pestis PY-71]
gi|420769918|ref|ZP_15243080.1| RNA-binding protein YhbY [Yersinia pestis PY-72]
gi|420774887|ref|ZP_15247587.1| RNA-binding protein YhbY [Yersinia pestis PY-76]
gi|420780522|ref|ZP_15252540.1| RNA-binding protein YhbY [Yersinia pestis PY-88]
gi|420786113|ref|ZP_15257425.1| RNA-binding protein YhbY [Yersinia pestis PY-89]
gi|420791169|ref|ZP_15261968.1| CRS1 / YhbY domain protein [Yersinia pestis PY-90]
gi|420796731|ref|ZP_15266975.1| RNA-binding protein YhbY [Yersinia pestis PY-91]
gi|420801834|ref|ZP_15271556.1| RNA-binding protein YhbY [Yersinia pestis PY-92]
gi|420807179|ref|ZP_15276403.1| RNA-binding protein YhbY [Yersinia pestis PY-93]
gi|420812567|ref|ZP_15281233.1| CRS1 / YhbY domain protein [Yersinia pestis PY-94]
gi|420818070|ref|ZP_15286217.1| RNA-binding protein YhbY [Yersinia pestis PY-95]
gi|420823373|ref|ZP_15290964.1| RNA-binding protein YhbY [Yersinia pestis PY-96]
gi|420828446|ref|ZP_15295531.1| RNA-binding protein YhbY [Yersinia pestis PY-98]
gi|420834060|ref|ZP_15300599.1| RNA-binding protein YhbY [Yersinia pestis PY-99]
gi|420838992|ref|ZP_15305061.1| RNA-binding protein YhbY [Yersinia pestis PY-100]
gi|420844193|ref|ZP_15309777.1| RNA-binding protein YhbY [Yersinia pestis PY-101]
gi|420849854|ref|ZP_15314858.1| RNA-binding protein YhbY [Yersinia pestis PY-102]
gi|420855539|ref|ZP_15319660.1| RNA-binding protein YhbY [Yersinia pestis PY-103]
gi|420860644|ref|ZP_15324159.1| RNA-binding protein YhbY [Yersinia pestis PY-113]
gi|421765014|ref|ZP_16201801.1| hypothetical protein INS_18146 [Yersinia pestis INS]
gi|21957397|gb|AAM84268.1|AE013670_5 hypothetical protein y0680 [Yersinia pestis KIM10+]
gi|45435290|gb|AAS60849.1| Predicted RNA-binding protein containing KH domain, possibly
ribosomal protein [Yersinia pestis biovar Microtus str.
91001]
gi|51588106|emb|CAH19712.1| conserved hypothetical protein [Yersinia pseudotuberculosis IP
32953]
gi|108777056|gb|ABG19575.1| hypothetical protein YPN_3248 [Yersinia pestis Nepal516]
gi|108777965|gb|ABG12023.1| hypothetical protein YPA_0054 [Yersinia pestis Antiqua]
gi|115349129|emb|CAL22092.1| conserved hypothetical protein [Yersinia pestis CO92]
gi|145212496|gb|ABP41903.1| hypothetical protein YPDSF_3553 [Yersinia pestis Pestoides F]
gi|149288918|gb|EDM38998.1| hypothetical protein YPE_3725 [Yersinia pestis CA88-4125]
gi|152959058|gb|ABS46519.1| conserved hypothetical protein TIGR00253 [Yersinia
pseudotuberculosis IP 31758]
gi|162353162|gb|ABX87110.1| conserved hypothetical protein TIGR00253 [Yersinia pestis Angola]
gi|165914512|gb|EDR33126.1| conserved hypothetical protein TIGR00253 [Yersinia pestis biovar
Orientalis str. IP275]
gi|165919871|gb|EDR37172.1| conserved hypothetical protein TIGR00253 [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165989799|gb|EDR42100.1| conserved hypothetical protein TIGR00253 [Yersinia pestis biovar
Antiqua str. E1979001]
gi|166204768|gb|EDR49248.1| conserved hypothetical protein TIGR00253 [Yersinia pestis biovar
Antiqua str. B42003004]
gi|166961421|gb|EDR57442.1| conserved hypothetical protein TIGR00253 [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167049350|gb|EDR60758.1| conserved hypothetical protein TIGR00253 [Yersinia pestis biovar
Antiqua str. UG05-0454]
gi|167057613|gb|EDR67359.1| conserved hypothetical protein TIGR00253 [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|169752487|gb|ACA70005.1| protein of unknown function UPF0044 [Yersinia pseudotuberculosis
YPIII]
gi|186696859|gb|ACC87488.1| protein of unknown function UPF0044 [Yersinia pseudotuberculosis
PB1/+]
gi|229679652|gb|EEO75755.1| predicted RNA-binding protein [Yersinia pestis Nepal516]
gi|229687212|gb|EEO79287.1| predicted RNA-binding protein [Yersinia pestis biovar Orientalis
str. India 195]
gi|229695522|gb|EEO85569.1| predicted RNA-binding protein [Yersinia pestis biovar Orientalis
str. PEXU2]
gi|229700423|gb|EEO88455.1| predicted RNA-binding protein [Yersinia pestis Pestoides A]
gi|270337632|gb|EFA48409.1| RNA-binding protein, YhbY family [Yersinia pestis KIM D27]
gi|320013707|gb|ADV97278.1| putative RNA-binding protein [Yersinia pestis biovar Medievalis
str. Harbin 35]
gi|342853774|gb|AEL72327.1| hypothetical protein A1122_08380 [Yersinia pestis A1122]
gi|391422327|gb|EIQ84915.1| RNA-binding protein YhbY [Yersinia pestis PY-01]
gi|391422514|gb|EIQ85085.1| RNA-binding protein YhbY [Yersinia pestis PY-02]
gi|391422677|gb|EIQ85232.1| RNA-binding protein YhbY [Yersinia pestis PY-03]
gi|391437473|gb|EIQ98326.1| RNA-binding protein YhbY [Yersinia pestis PY-04]
gi|391438556|gb|EIQ99291.1| RNA-binding protein YhbY [Yersinia pestis PY-05]
gi|391442301|gb|EIR02709.1| RNA-binding protein YhbY [Yersinia pestis PY-06]
gi|391454444|gb|EIR13656.1| RNA-binding protein YhbY [Yersinia pestis PY-07]
gi|391454977|gb|EIR14133.1| RNA-binding protein YhbY [Yersinia pestis PY-08]
gi|391456982|gb|EIR15961.1| RNA-binding protein YhbY [Yersinia pestis PY-09]
gi|391470196|gb|EIR27884.1| RNA-binding protein YhbY [Yersinia pestis PY-10]
gi|391471173|gb|EIR28756.1| RNA-binding protein YhbY [Yersinia pestis PY-11]
gi|391472455|gb|EIR29913.1| RNA-binding protein YhbY [Yersinia pestis PY-12]
gi|391486086|gb|EIR42155.1| RNA-binding protein YhbY [Yersinia pestis PY-13]
gi|391487756|gb|EIR43657.1| RNA-binding protein YhbY [Yersinia pestis PY-15]
gi|391487847|gb|EIR43741.1| CRS1 / YhbY domain protein [Yersinia pestis PY-14]
gi|391502292|gb|EIR56605.1| RNA-binding protein YhbY [Yersinia pestis PY-19]
gi|391502480|gb|EIR56771.1| RNA-binding protein YhbY [Yersinia pestis PY-16]
gi|391507349|gb|EIR61183.1| RNA-binding protein YhbY [Yersinia pestis PY-25]
gi|391518156|gb|EIR70890.1| RNA-binding protein YhbY [Yersinia pestis PY-29]
gi|391519481|gb|EIR72111.1| RNA-binding protein YhbY [Yersinia pestis PY-34]
gi|391520280|gb|EIR72841.1| RNA-binding protein YhbY [Yersinia pestis PY-32]
gi|391532721|gb|EIR84076.1| RNA-binding protein YhbY [Yersinia pestis PY-36]
gi|391535482|gb|EIR86546.1| RNA-binding protein YhbY [Yersinia pestis PY-42]
gi|391538016|gb|EIR88853.1| CRS1 / YhbY domain protein [Yersinia pestis PY-45]
gi|391550945|gb|EIS00504.1| RNA-binding protein YhbY [Yersinia pestis PY-46]
gi|391551258|gb|EIS00784.1| RNA-binding protein YhbY [Yersinia pestis PY-47]
gi|391551597|gb|EIS01092.1| RNA-binding protein YhbY [Yersinia pestis PY-48]
gi|391565884|gb|EIS13935.1| RNA-binding protein YhbY [Yersinia pestis PY-52]
gi|391567241|gb|EIS15129.1| RNA-binding protein YhbY [Yersinia pestis PY-53]
gi|391571231|gb|EIS18609.1| CRS1 / YhbY domain protein [Yersinia pestis PY-54]
gi|391580553|gb|EIS26534.1| RNA-binding protein YhbY [Yersinia pestis PY-55]
gi|391582383|gb|EIS28144.1| RNA-binding protein YhbY [Yersinia pestis PY-56]
gi|391592965|gb|EIS37328.1| RNA-binding protein YhbY [Yersinia pestis PY-58]
gi|391596305|gb|EIS40254.1| RNA-binding protein YhbY [Yersinia pestis PY-60]
gi|391597055|gb|EIS40911.1| RNA-binding protein YhbY [Yersinia pestis PY-59]
gi|391610770|gb|EIS53016.1| RNA-binding protein YhbY [Yersinia pestis PY-61]
gi|391611134|gb|EIS53338.1| RNA-binding protein YhbY [Yersinia pestis PY-63]
gi|391613169|gb|EIS55165.1| RNA-binding protein YhbY [Yersinia pestis PY-64]
gi|391623983|gb|EIS64679.1| RNA-binding protein YhbY [Yersinia pestis PY-65]
gi|391627796|gb|EIS67966.1| RNA-binding protein YhbY [Yersinia pestis PY-66]
gi|391634401|gb|EIS73681.1| RNA-binding protein YhbY [Yersinia pestis PY-71]
gi|391636214|gb|EIS75275.1| RNA-binding protein YhbY [Yersinia pestis PY-72]
gi|391646474|gb|EIS84212.1| RNA-binding protein YhbY [Yersinia pestis PY-76]
gi|391649761|gb|EIS87117.1| RNA-binding protein YhbY [Yersinia pestis PY-88]
gi|391654081|gb|EIS90947.1| RNA-binding protein YhbY [Yersinia pestis PY-89]
gi|391659465|gb|EIS95745.1| CRS1 / YhbY domain protein [Yersinia pestis PY-90]
gi|391667056|gb|EIT02431.1| RNA-binding protein YhbY [Yersinia pestis PY-91]
gi|391676377|gb|EIT10790.1| RNA-binding protein YhbY [Yersinia pestis PY-93]
gi|391676838|gb|EIT11202.1| RNA-binding protein YhbY [Yersinia pestis PY-92]
gi|391677280|gb|EIT11601.1| CRS1 / YhbY domain protein [Yersinia pestis PY-94]
gi|391690425|gb|EIT23452.1| RNA-binding protein YhbY [Yersinia pestis PY-95]
gi|391692991|gb|EIT25778.1| RNA-binding protein YhbY [Yersinia pestis PY-96]
gi|391694693|gb|EIT27328.1| RNA-binding protein YhbY [Yersinia pestis PY-98]
gi|391707777|gb|EIT39093.1| RNA-binding protein YhbY [Yersinia pestis PY-99]
gi|391710674|gb|EIT41706.1| RNA-binding protein YhbY [Yersinia pestis PY-100]
gi|391711205|gb|EIT42187.1| RNA-binding protein YhbY [Yersinia pestis PY-101]
gi|391723581|gb|EIT53249.1| RNA-binding protein YhbY [Yersinia pestis PY-102]
gi|391724049|gb|EIT53666.1| RNA-binding protein YhbY [Yersinia pestis PY-103]
gi|391726998|gb|EIT56275.1| RNA-binding protein YhbY [Yersinia pestis PY-113]
gi|411173920|gb|EKS43957.1| hypothetical protein INS_18146 [Yersinia pestis INS]
Length = 97
Score = 42.7 bits (99), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 48/88 (54%)
Query: 178 LKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMK 237
+ L+ K+ + L++L L+ + +G G+TEG++ I + H E++K+ R
Sbjct: 1 MNLNNKQKQHLKSLAHPLKPVVMLGNNGLTEGVLAEIEQTLAHHELIKVKITAEERETKA 60
Query: 238 RTHDSLERKTGGLVVWRSGSKIILYRGA 265
D++ R+TG + V G+ ++LYR A
Sbjct: 61 LIADAIVRETGAVNVQMIGNILVLYRPA 88
>gi|224105319|ref|XP_002313766.1| predicted protein [Populus trichocarpa]
gi|222850174|gb|EEE87721.1| predicted protein [Populus trichocarpa]
Length = 99
Score = 42.4 bits (98), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 3/87 (3%)
Query: 180 LSGKELRRLRTLGIGLRKKLK---IGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNM 236
L+ KE + L + GL KKLK IGK+G T+ + E E++KI C +
Sbjct: 1 LTVKEKKELASYAHGLGKKLKSQLIGKSGFTDNVATSFIETLEANELLKIKIHRTCPGEL 60
Query: 237 KRTHDSLERKTGGLVVWRSGSKIILYR 263
+ LE TG +VV + G +I+YR
Sbjct: 61 EDVVRRLEEATGSVVVGQIGRTVIIYR 87
>gi|119944571|ref|YP_942251.1| hypothetical protein Ping_0809 [Psychromonas ingrahamii 37]
gi|119863175|gb|ABM02652.1| hypothetical protein UPF0044 [Psychromonas ingrahamii 37]
Length = 110
Score = 42.4 bits (98), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 50/91 (54%)
Query: 178 LKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMK 237
+KLS K+ + L+ L L+ + +G+ G+TEG++ I H E++KI R +
Sbjct: 13 MKLSNKQKQYLKGLAHSLKPVVLLGQNGLTEGVLAEIENALSHHELIKIKVSSDDRETKQ 72
Query: 238 RTHDSLERKTGGLVVWRSGSKIILYRGADYK 268
D++ R+T L + + G ++L+R ++ K
Sbjct: 73 LIIDAIVRETEALNITKIGHIVVLFRPSEDK 103
>gi|358066816|ref|ZP_09153306.1| hypothetical protein HMPREF9333_00185 [Johnsonella ignava ATCC
51276]
gi|356695087|gb|EHI56738.1| hypothetical protein HMPREF9333_00185 [Johnsonella ignava ATCC
51276]
Length = 98
Score = 42.4 bits (98), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 38/79 (48%)
Query: 188 LRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRTHDSLERKT 247
L+ L + IGK GIT+ ++ + E E++K+ C ++K D + T
Sbjct: 9 LKGLAMVYEAIFNIGKQGITDEVIEAVKEALEAKELIKLSVLKNCTQDLKSIADEIASCT 68
Query: 248 GGLVVWRSGSKIILYRGAD 266
VV G KIILY+ AD
Sbjct: 69 RSDVVQVIGRKIILYKQAD 87
>gi|242373899|ref|ZP_04819473.1| conserved hypothetical protein [Staphylococcus epidermidis
M23864:W1]
gi|242348453|gb|EES40055.1| conserved hypothetical protein [Staphylococcus epidermidis
M23864:W1]
Length = 96
Score = 42.4 bits (98), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 41/84 (48%)
Query: 180 LSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRT 239
L+GK+ R LR+L +IGK GI E ++N I E + E++KI +
Sbjct: 2 LTGKQKRYLRSLAHNTDPTFQIGKGGINENMINQIDETLENRELIKIHVLQNNFDDKNEL 61
Query: 240 HDSLERKTGGLVVWRSGSKIILYR 263
+L T +V GS I+LYR
Sbjct: 62 ARALSEATKSELVQVIGSMIVLYR 85
>gi|408373090|ref|ZP_11170788.1| hypothetical protein A11A3_03384 [Alcanivorax hongdengensis A-11-3]
gi|407766928|gb|EKF75367.1| hypothetical protein A11A3_03384 [Alcanivorax hongdengensis A-11-3]
Length = 104
Score = 42.0 bits (97), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 47/91 (51%)
Query: 180 LSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRT 239
LS ++++RLR +G L+ L G G+T+ V ++ R E++K+ R +
Sbjct: 3 LSNQDIKRLRRIGHHLKAILIFGDKGLTDNFVEELNLRLEDHELIKVKVNAETRDDRADI 62
Query: 240 HDSLERKTGGLVVWRSGSKIILYRGADYKYP 270
+L +K+G ++ R G+ +LYR A P
Sbjct: 63 VTALCQKSGAELIQRIGNIALLYRAAQKPNP 93
>gi|255637509|gb|ACU19081.1| unknown [Glycine max]
Length = 260
Score = 42.0 bits (97), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 45/104 (43%), Gaps = 3/104 (2%)
Query: 163 SKMNEKEKEVPTLAELKLSGKELRRLRTLGIGLRKKLK---IGKAGITEGIVNGIHERWR 219
S + K KE L LS KE + L + L KLK +GK+G+T + E
Sbjct: 104 SPLERKRKESVKLEVPSLSVKERKELASYAHSLGDKLKTQLVGKSGVTPNLATSFIETLE 163
Query: 220 HAEVVKIVCEDLCRLNMKRTHDSLERKTGGLVVWRSGSKIILYR 263
E++KI C + LE TG + V + G I+YR
Sbjct: 164 ANELLKIKIHRTCPGELDDVVKQLEEATGSVAVGQIGRTFIIYR 207
>gi|356538720|ref|XP_003537849.1| PREDICTED: uncharacterized protein LOC100779359 [Glycine max]
Length = 260
Score = 42.0 bits (97), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 46/104 (44%), Gaps = 3/104 (2%)
Query: 163 SKMNEKEKEVPTLAELKLSGKELRRLRTLGIGLRKKLK---IGKAGITEGIVNGIHERWR 219
S + K KE L LS KE + L + L KLK +GK+G+T + E
Sbjct: 104 SPLERKRKESVKLEVPSLSVKERKELASYAHSLGDKLKTQLVGKSGVTPNLATSFIETLE 163
Query: 220 HAEVVKIVCEDLCRLNMKRTHDSLERKTGGLVVWRSGSKIILYR 263
E++KI C + LE TG + V + G +I+YR
Sbjct: 164 ANELLKIKIHRTCPGELDDVVKQLEEATGSVAVGQIGRTLIIYR 207
>gi|9837554|gb|AAG00597.1| CRS1 [Zea mays]
Length = 235
Score = 42.0 bits (97), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 42/81 (51%), Gaps = 5/81 (6%)
Query: 167 EKEKEVPTLAELKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAE---V 223
EK+ PT AE +L EL RLR L G+ + + KAG+T+ +V + W E
Sbjct: 157 EKKPREPTRAETELETHELHRLRRLARGIGRWARAKKAGVTDEVVKEVRREWASGEELAA 216
Query: 224 VKIVCEDLCRLNMKRTHDSLE 244
V+IV + R +M R + LE
Sbjct: 217 VRIV--EPLRRSMDRAREILE 235
>gi|123440805|ref|YP_001004796.1| hypothetical protein YE0426 [Yersinia enterocolitica subsp.
enterocolitica 8081]
gi|238750118|ref|ZP_04611621.1| Transcription elongation factor GreA [Yersinia rohdei ATCC 43380]
gi|238757568|ref|ZP_04618753.1| Transcription elongation factor GreA [Yersinia aldovae ATCC 35236]
gi|238761760|ref|ZP_04622734.1| Transcription elongation factor GreA [Yersinia kristensenii ATCC
33638]
gi|238783523|ref|ZP_04627545.1| Transcription elongation factor GreA [Yersinia bercovieri ATCC
43970]
gi|238787586|ref|ZP_04631384.1| Transcription elongation factor GreA [Yersinia frederiksenii ATCC
33641]
gi|238793014|ref|ZP_04636643.1| Transcription elongation factor GreA [Yersinia intermedia ATCC
29909]
gi|238797560|ref|ZP_04641057.1| Transcription elongation factor GreA [Yersinia mollaretii ATCC
43969]
gi|332160071|ref|YP_004296648.1| hypothetical protein YE105_C0447 [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|386311106|ref|YP_006007162.1| RNA binding protein [Yersinia enterocolitica subsp. palearctica
Y11]
gi|418239867|ref|ZP_12866411.1| hypothetical protein IOK_00325 [Yersinia enterocolitica subsp.
palearctica PhRBD_Ye1]
gi|420260785|ref|ZP_14763455.1| RNA binding protein [Yersinia enterocolitica subsp. enterocolitica
WA-314]
gi|433551935|ref|ZP_20507975.1| FIG004454: RNA binding protein [Yersinia enterocolitica IP 10393]
gi|122087766|emb|CAL10552.1| conserved hypothetical protein [Yersinia enterocolitica subsp.
enterocolitica 8081]
gi|238699874|gb|EEP92617.1| Transcription elongation factor GreA [Yersinia kristensenii ATCC
33638]
gi|238704330|gb|EEP96862.1| Transcription elongation factor GreA [Yersinia aldovae ATCC 35236]
gi|238711662|gb|EEQ03877.1| Transcription elongation factor GreA [Yersinia rohdei ATCC 43380]
gi|238715578|gb|EEQ07568.1| Transcription elongation factor GreA [Yersinia bercovieri ATCC
43970]
gi|238718557|gb|EEQ10376.1| Transcription elongation factor GreA [Yersinia mollaretii ATCC
43969]
gi|238724373|gb|EEQ16015.1| Transcription elongation factor GreA [Yersinia frederiksenii ATCC
33641]
gi|238727614|gb|EEQ19139.1| Transcription elongation factor GreA [Yersinia intermedia ATCC
29909]
gi|318607369|emb|CBY28867.1| RNA binding protein [Yersinia enterocolitica subsp. palearctica
Y11]
gi|325664301|gb|ADZ40945.1| hypothetical protein YE105_C0447 [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|330862038|emb|CBX72204.1| RNA-binding protein yhbY [Yersinia enterocolitica W22703]
gi|351780693|gb|EHB22758.1| hypothetical protein IOK_00325 [Yersinia enterocolitica subsp.
palearctica PhRBD_Ye1]
gi|404511806|gb|EKA25671.1| RNA binding protein [Yersinia enterocolitica subsp. enterocolitica
WA-314]
gi|431787233|emb|CCO71015.1| FIG004454: RNA binding protein [Yersinia enterocolitica IP 10393]
Length = 97
Score = 42.0 bits (97), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 48/88 (54%)
Query: 178 LKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMK 237
+ L+ K+ + L++L L+ + +G G+TEG++ I + H E++K+ R
Sbjct: 1 MNLNNKQKQHLKSLAHPLKPVVMLGNNGLTEGVLAEIEQTLEHHELIKVKITAEERETKA 60
Query: 238 RTHDSLERKTGGLVVWRSGSKIILYRGA 265
D++ R+TG + V G+ ++LYR A
Sbjct: 61 LIADAIVRETGAVNVQIIGNILVLYRPA 88
>gi|418019790|ref|ZP_12659209.1| putative RNA-binding protein, YhbY family [Candidatus Regiella
insecticola R5.15]
gi|347604858|gb|EGY29405.1| putative RNA-binding protein, YhbY family [Candidatus Regiella
insecticola R5.15]
Length = 97
Score = 42.0 bits (97), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 45/88 (51%)
Query: 178 LKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMK 237
+ L+ K+ + L++L L+ + IG G+T+ ++ I + H E++KI R
Sbjct: 1 MNLNNKQKQHLKSLAHSLKPVVMIGNNGLTKAVLAEIEQTLEHHEIIKIKITTEKRETKS 60
Query: 238 RTHDSLERKTGGLVVWRSGSKIILYRGA 265
D++ KT VV G+ ++LYR A
Sbjct: 61 NIADTIVDKTNATVVQIIGNILVLYRPA 88
>gi|328956004|ref|YP_004373337.1| hypothetical protein Corgl_1421 [Coriobacterium glomerans PW2]
gi|328456328|gb|AEB07522.1| protein of unknown function UPF0044 [Coriobacterium glomerans PW2]
Length = 99
Score = 42.0 bits (97), Expect = 1.9, Method: Composition-based stats.
Identities = 25/86 (29%), Positives = 41/86 (47%)
Query: 178 LKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMK 237
+ L+G+++R+LR +G L + IGKA + G V E E++K D L +
Sbjct: 1 MSLTGRQIRQLRKIGHHLDPVVIIGKANVGAGTVAQASESLEAHELIKCSVLDTSALTAR 60
Query: 238 RTHDSLERKTGGLVVWRSGSKIILYR 263
D + + G +V G + LYR
Sbjct: 61 AAADEVAKSCGAEIVQVIGRRFTLYR 86
>gi|294634506|ref|ZP_06713041.1| RNA-binding protein YhbY [Edwardsiella tarda ATCC 23685]
gi|451966460|ref|ZP_21919713.1| putative RNA-binding protein [Edwardsiella tarda NBRC 105688]
gi|291092020|gb|EFE24581.1| RNA-binding protein YhbY [Edwardsiella tarda ATCC 23685]
gi|451314761|dbj|GAC65075.1| putative RNA-binding protein [Edwardsiella tarda NBRC 105688]
Length = 97
Score = 42.0 bits (97), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 47/86 (54%)
Query: 178 LKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMK 237
+ L+ K+ + L++L L+ +++G G+TEG++ I + H E++K+ R
Sbjct: 1 MNLTNKQKQHLKSLAHSLKPVVQLGANGLTEGVLAEIEQALAHHELIKVKIAAEERETKT 60
Query: 238 RTHDSLERKTGGLVVWRSGSKIILYR 263
D++ R+TG V G+ +++YR
Sbjct: 61 LIADAIVRETGACNVQLIGNVLVIYR 86
>gi|375084589|ref|ZP_09731451.1| YhbY family putative RNA-binding protein [Megamonas funiformis YIT
11815]
gi|374567978|gb|EHR39174.1| YhbY family putative RNA-binding protein [Megamonas funiformis YIT
11815]
Length = 101
Score = 42.0 bits (97), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 180 LSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRT 239
L+GK+ R LR+LG+ L + IGK GIT +VN E E++K+ C +++
Sbjct: 6 LTGKQKRFLRSLGMTLEPIVPIGKEGITPAVVNSADEAIEKRELIKVRVLQNCPEDIEVA 65
Query: 240 HDSLERKTGGLVVWRSGSKIILYRGADYKYP 270
+L +T +V G +L+R ++K P
Sbjct: 66 ITTLAERTNCDLVQVIGRNGLLWR-RNFKKP 95
>gi|407795084|ref|ZP_11142095.1| RNA-binding protein [Idiomarina xiamenensis 10-D-4]
gi|407209417|gb|EKE79313.1| RNA-binding protein [Idiomarina xiamenensis 10-D-4]
Length = 98
Score = 42.0 bits (97), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 48/89 (53%)
Query: 178 LKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMK 237
++L+ K+ + L+ L L+ + +G G+TEG+V I H E++K+ + R +
Sbjct: 1 MQLTNKQKQHLKALAHPLKPVVLLGANGLTEGVVAEIELALSHHELIKVKVPEEERELRQ 60
Query: 238 RTHDSLERKTGGLVVWRSGSKIILYRGAD 266
+ + ++ R+TG V G ILYR A+
Sbjct: 61 QIYAAIVRETGASEVQVIGKTQILYRPAE 89
>gi|378582085|ref|ZP_09830725.1| hypothetical protein CKS_4895 [Pantoea stewartii subsp. stewartii
DC283]
gi|377815400|gb|EHT98515.1| hypothetical protein CKS_4895 [Pantoea stewartii subsp. stewartii
DC283]
Length = 97
Score = 41.6 bits (96), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 47/88 (53%)
Query: 178 LKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMK 237
+ LS K+ + L++L L+ + +G G+TEG++ I H E++K+ R +
Sbjct: 1 MNLSTKQKQHLKSLAHPLKPVVMLGGNGLTEGVLAEIEHALGHHELIKVKVASEDRETRQ 60
Query: 238 RTHDSLERKTGGLVVWRSGSKIILYRGA 265
D++ R+TG + V G ++LYR A
Sbjct: 61 LIVDAIVRETGAVNVQLIGKTLVLYRPA 88
>gi|414589365|tpg|DAA39936.1| TPA: putative protein phosphatase 2A family protein [Zea mays]
Length = 170
Score = 41.6 bits (96), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 31/44 (70%), Gaps = 3/44 (6%)
Query: 241 DSLERKTGGLVVWRSGSKIILYRGADYKYPYFLADESSTDGASS 284
++L+R+TG L++WR GS +++YRG+ YK P + +GASS
Sbjct: 91 NNLKRRTGELIMWRPGSVMVVYRGSIYKRPL---KSQALNGASS 131
>gi|297801994|ref|XP_002868881.1| hypothetical protein ARALYDRAFT_490673 [Arabidopsis lyrata subsp.
lyrata]
gi|297314717|gb|EFH45140.1| hypothetical protein ARALYDRAFT_490673 [Arabidopsis lyrata subsp.
lyrata]
Length = 287
Score = 41.6 bits (96), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 3/91 (3%)
Query: 176 AELKLSGKELRRLRTLGIGLRKKLK---IGKAGITEGIVNGIHERWRHAEVVKIVCEDLC 232
+ LKLS KE + L + L KLK +GK+G+T+ +V E E++K+
Sbjct: 140 SALKLSIKEKKELASYAHSLGDKLKCQLVGKSGVTDSVVFSFLETLEKNELLKVKIRKTS 199
Query: 233 RLNMKRTHDSLERKTGGLVVWRSGSKIILYR 263
++ LE TG + V + G +ILYR
Sbjct: 200 PDELEDAVQHLEEATGSVAVGQIGRTVILYR 230
>gi|229829085|ref|ZP_04455154.1| hypothetical protein GCWU000342_01170 [Shuttleworthia satelles DSM
14600]
gi|229792248|gb|EEP28362.1| hypothetical protein GCWU000342_01170 [Shuttleworthia satelles DSM
14600]
Length = 98
Score = 41.6 bits (96), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 43/88 (48%)
Query: 178 LKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMK 237
L L+ K+ L ++ L L+IGK+ +T IVN + E E++KI C +
Sbjct: 2 LTLTNKQRAYLSSMANPLNAILQIGKSSVTPEIVNSVDEALEARELIKIHVLKNCFDDPM 61
Query: 238 RTHDSLERKTGGLVVWRSGSKIILYRGA 265
+ L ++ LVV G IILYR A
Sbjct: 62 ELANILAERSHSLVVRVIGKIIILYRPA 89
>gi|225025980|ref|ZP_03715172.1| hypothetical protein EUBHAL_00217 [Eubacterium hallii DSM 3353]
gi|224956766|gb|EEG37975.1| RNA-binding protein, YhbY family [Eubacterium hallii DSM 3353]
Length = 95
Score = 41.6 bits (96), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 44/86 (51%)
Query: 180 LSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRT 239
++ K+ L++L + + +IGKA +T ++ GI E E++K+ C + +
Sbjct: 1 MTSKQRAYLKSLAMTMDPIFQIGKASLTPEVIEGIREAIDKRELIKVSVLKNCFDDPREI 60
Query: 240 HDSLERKTGGLVVWRSGSKIILYRGA 265
+ L +T VV G KI+LY+ A
Sbjct: 61 AEVLAERTRSQVVQVIGKKIVLYKPA 86
>gi|317493618|ref|ZP_07952039.1| CRS1/YhbY domain-containing protein [Enterobacteriaceae bacterium
9_2_54FAA]
gi|365836759|ref|ZP_09378146.1| RNA-binding protein, YhbY family [Hafnia alvei ATCC 51873]
gi|316918561|gb|EFV39899.1| CRS1/YhbY domain-containing protein [Enterobacteriaceae bacterium
9_2_54FAA]
gi|364563441|gb|EHM41250.1| RNA-binding protein, YhbY family [Hafnia alvei ATCC 51873]
Length = 97
Score = 41.6 bits (96), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 47/86 (54%)
Query: 178 LKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMK 237
+ L+ K+ + L++L L+ +++G G+TEG++ I + H E++K+ R
Sbjct: 1 MNLNNKQKQHLKSLAHPLKPVVQLGNNGLTEGVLAEIEQALAHHELIKVKIAAEERDTKT 60
Query: 238 RTHDSLERKTGGLVVWRSGSKIILYR 263
D++ R+TG V G+ +++YR
Sbjct: 61 LIADAIVRETGACQVQLIGNVLVIYR 86
>gi|291519389|emb|CBK74610.1| Predicted RNA-binding protein containing KH domain, possibly
ribosomal protein [Butyrivibrio fibrisolvens 16/4]
Length = 95
Score = 41.6 bits (96), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 40/86 (46%)
Query: 180 LSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRT 239
++ K+ L +L + L+IGKA +T N + E E++KI C + K
Sbjct: 1 MTNKQRAYLSSLAADMSPILQIGKASLTPEYTNAVDEALEARELIKINVLKNCFDDPKEI 60
Query: 240 HDSLERKTGGLVVWRSGSKIILYRGA 265
L +T VV G KIILYR A
Sbjct: 61 AQVLSERTHSEVVRVIGRKIILYRAA 86
>gi|387929811|ref|ZP_10132488.1| hypothetical protein PB1_15384 [Bacillus methanolicus PB1]
gi|387586629|gb|EIJ78953.1| hypothetical protein PB1_15384 [Bacillus methanolicus PB1]
Length = 96
Score = 41.6 bits (96), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 41/84 (48%)
Query: 180 LSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRT 239
L+GK+ R LR+ L ++GK G+ E ++ + E++KI C + K
Sbjct: 2 LTGKQKRFLRSEAHHLNPIFQVGKGGVNENMIKQVSNALEARELMKISVLQNCEDDKKTV 61
Query: 240 HDSLERKTGGLVVWRSGSKIILYR 263
+ L TG +V G+ IILY+
Sbjct: 62 ANQLSEGTGADIVQIIGNTIILYK 85
>gi|376260346|ref|YP_005147066.1| putative RNA-binding protein, YhbY family [Clostridium sp. BNL1100]
gi|373944340|gb|AEY65261.1| putative RNA-binding protein, YhbY family [Clostridium sp. BNL1100]
Length = 107
Score = 41.6 bits (96), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 41/84 (48%)
Query: 180 LSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRT 239
L+GK+ LR+L L+ ++GK G+++ ++ + E++K + K
Sbjct: 13 LTGKQRSYLRSLANNLQPIFQVGKGGVSDNMIKQFSDALEARELIKATVLKNAECDTKTI 72
Query: 240 HDSLERKTGGLVVWRSGSKIILYR 263
+ + +T VV GSK +LYR
Sbjct: 73 CEEIAEQTNSEVVQVIGSKFVLYR 96
>gi|320540169|ref|ZP_08039824.1| putative RNA-binding protein [Serratia symbiotica str. Tucson]
gi|320029835|gb|EFW11859.1| putative RNA-binding protein [Serratia symbiotica str. Tucson]
Length = 97
Score = 41.6 bits (96), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Query: 178 LKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEV--VKIVCEDLCRLN 235
+ L+ K+ + L+ L L+ + +G G+TEG++ I + H E+ VKI ED R
Sbjct: 1 MHLNNKQKQHLKGLAHPLKPVVMLGNHGLTEGVLAEIEQTLEHHELIKVKIAAED--RET 58
Query: 236 MKRTHDSLERKTGGLVVWRSGSKIILYR 263
D++ R+TG V G+ +ILYR
Sbjct: 59 KTLIADAIVRETGACNVQVIGNTLILYR 86
>gi|410671297|ref|YP_006923668.1| hypothetical protein Mpsy_2094 [Methanolobus psychrophilus R15]
gi|409170425|gb|AFV24300.1| hypothetical protein Mpsy_2094 [Methanolobus psychrophilus R15]
Length = 86
Score = 41.6 bits (96), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 952 RPVLAVGRSNIVTGVAKAIKAHFEKYPLA-IVNVKGRAKGTSVQEVVAKLEEATGAVLVS 1010
+P+L +G++ I V + +K + Y L I +K +G V+E KL E TG L+
Sbjct: 17 KPILNIGKNGITDAVVEEVKKQVKAYRLVKIKMLKTTPEGEDVKEAAQKLAEVTGTTLIE 76
Query: 1011 QEPSKVILYR 1020
S V+LYR
Sbjct: 77 VRGSTVVLYR 86
>gi|402574417|ref|YP_006623760.1| RNA-binding protein [Desulfosporosinus meridiei DSM 13257]
gi|402255614|gb|AFQ45889.1| putative RNA-binding protein, YhbY family [Desulfosporosinus
meridiei DSM 13257]
Length = 97
Score = 41.2 bits (95), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 41/84 (48%)
Query: 180 LSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRT 239
L GK+ R LR +G + L++GK+GITE +V +E E++K C K
Sbjct: 2 LKGKQKRFLRAMGNEMVPILQVGKSGITESVVTQTNETIEARELIKGRVLQNCLEEPKAV 61
Query: 240 HDSLERKTGGLVVWRSGSKIILYR 263
L +TG +V G +LYR
Sbjct: 62 AAVLAEQTGSELVQVIGRNFLLYR 85
>gi|218132486|ref|ZP_03461290.1| hypothetical protein BACPEC_00345 [[Bacteroides] pectinophilus ATCC
43243]
gi|217992596|gb|EEC58598.1| RNA-binding protein, YhbY family [[Bacteroides] pectinophilus ATCC
43243]
Length = 103
Score = 41.2 bits (95), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 44/91 (48%)
Query: 175 LAELKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRL 234
+A ++ K+ L+ L + + +IGK+ IT V GI E E++KI C
Sbjct: 1 MATAAMTSKQRAYLKGLAMTMDPIFQIGKSSITPEFVKGISEALDKRELIKISVLQNCAD 60
Query: 235 NMKRTHDSLERKTGGLVVWRSGSKIILYRGA 265
+ K + + +T VV G KI+LY+ A
Sbjct: 61 DPKELAEIIAERTRSQVVQVIGKKIVLYKEA 91
>gi|289550634|ref|YP_003471538.1| RNA binding protein [Staphylococcus lugdunensis HKU09-01]
gi|385784262|ref|YP_005760435.1| hypothetical protein SLUG_13170 [Staphylococcus lugdunensis
N920143]
gi|418413938|ref|ZP_12987154.1| hypothetical protein HMPREF9308_00319 [Staphylococcus lugdunensis
ACS-027-V-Sch2]
gi|289180166|gb|ADC87411.1| RNA binding protein [Staphylococcus lugdunensis HKU09-01]
gi|339894518|emb|CCB53799.1| conserved hypothetical protein [Staphylococcus lugdunensis N920143]
gi|410877576|gb|EKS25468.1| hypothetical protein HMPREF9308_00319 [Staphylococcus lugdunensis
ACS-027-V-Sch2]
Length = 96
Score = 41.2 bits (95), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 43/87 (49%), Gaps = 6/87 (6%)
Query: 180 LSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRT 239
L+GK+ R LR+L +IGK+GI E + N I + E+VKI + + N
Sbjct: 2 LTGKQKRYLRSLAHNTDPTFQIGKSGINENMCNQISDTLEKRELVKI---HILQNNFDDK 58
Query: 240 HD---SLERKTGGLVVWRSGSKIILYR 263
+D L T VV GS I+LY+
Sbjct: 59 NDLAIQLASSTKSEVVQIIGSMIVLYK 85
>gi|4567270|gb|AAD23683.1| unknown protein [Arabidopsis thaliana]
Length = 151
Score = 41.2 bits (95), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 45/89 (50%), Gaps = 3/89 (3%)
Query: 178 LKLSGKELRRLRTLGIGLRKKLK---IGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRL 234
L+LS KE R+L + L KLK +GK+G+T+ +V E E++K+ C
Sbjct: 13 LELSAKEKRKLASYAHHLGDKLKSQLVGKSGVTDSVVLSFVETLEKNELLKVKIHRTCPG 72
Query: 235 NMKRTHDSLERKTGGLVVWRSGSKIILYR 263
++ LE TG + V + +ILYR
Sbjct: 73 ELEDMILRLEEATGSVSVGQIARTVILYR 101
>gi|253991510|ref|YP_003042866.1| conserved hypothetical protein [Photorhabdus asymbiotica]
gi|211638388|emb|CAR67010.1| similar to unknown protein yhby of escherichia coli [Photorhabdus
asymbiotica subsp. asymbiotica ATCC 43949]
gi|253782960|emb|CAQ86125.1| conserved hypothetical protein [Photorhabdus asymbiotica]
Length = 97
Score = 41.2 bits (95), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 51/91 (56%), Gaps = 4/91 (4%)
Query: 178 LKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEV--VKIVCEDLCRLN 235
+ L+ K+++ L++L L+ + IG G+TEG++ I + H E+ VKI ED N
Sbjct: 1 MTLNKKQVQHLKSLAHPLKPVVMIGNNGLTEGVLAEIEQTLAHHELIKVKIAGEDREIKN 60
Query: 236 MKRTHDSLERKTGGLVVWRSGSKIILYRGAD 266
+ D++ R+TG V G ++LYR ++
Sbjct: 61 L--IADAIVRETGAYNVQIIGKTLVLYRQSE 89
>gi|229817987|ref|ZP_04448269.1| hypothetical protein BIFANG_03274 [Bifidobacterium angulatum DSM
20098 = JCM 7096]
gi|229784591|gb|EEP20705.1| hypothetical protein BIFANG_03274 [Bifidobacterium angulatum DSM
20098 = JCM 7096]
Length = 101
Score = 41.2 bits (95), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 41/86 (47%)
Query: 178 LKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMK 237
+ L+ K+ ++LR L L+ +GK +TE + E E++K +D L K
Sbjct: 1 MALTKKQTKQLRALANSLKPLFYVGKNDLTEAAIKQADETIEKHELIKCAVQDGSELTAK 60
Query: 238 RTHDSLERKTGGLVVWRSGSKIILYR 263
+ L + G VV G++ ++YR
Sbjct: 61 EAAEQLAERLGADVVQTIGNRFVIYR 86
>gi|381206074|ref|ZP_09913145.1| hypothetical protein SclubJA_10659 [SAR324 cluster bacterium
JCVI-SC AAA005]
Length = 108
Score = 41.2 bits (95), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 46/90 (51%)
Query: 174 TLAELKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCR 233
+L L ++GK+ R LR L L+ L++GK G+++ ++ ++ E++K+ +
Sbjct: 5 SLNSLMMTGKQRRALRALAHSLKPLLQLGKNGLSDQFLDQLNTALLQHELIKLKVLENAP 64
Query: 234 LNMKRTHDSLERKTGGLVVWRSGSKIILYR 263
+ LE + V+ GS IILYR
Sbjct: 65 NTPRECAKILEEQPALEVIQAIGSTIILYR 94
>gi|415718067|ref|ZP_11467129.1| hypothetical protein CGSMWGv1500E_02711 [Gardnerella vaginalis
1500E]
gi|388060319|gb|EIK83017.1| hypothetical protein CGSMWGv1500E_02711 [Gardnerella vaginalis
1500E]
Length = 101
Score = 41.2 bits (95), Expect = 3.3, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 44/86 (51%)
Query: 178 LKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMK 237
+ L+ K+ ++LR L L L +GK IT+ V E ++ E++K +D L+ K
Sbjct: 1 MALTKKQTKQLRALANTLSPLLYVGKNDITDAAVKQADETMQYHELMKCAVQDGSGLSAK 60
Query: 238 RTHDSLERKTGGLVVWRSGSKIILYR 263
+L K G VV G++ +L+R
Sbjct: 61 EAAVALAEKLGAEVVQVIGNRFVLFR 86
>gi|238755148|ref|ZP_04616494.1| Transcription elongation factor GreA [Yersinia ruckeri ATCC 29473]
gi|238706595|gb|EEP98966.1| Transcription elongation factor GreA [Yersinia ruckeri ATCC 29473]
Length = 97
Score = 41.2 bits (95), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 47/88 (53%)
Query: 178 LKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMK 237
+ L+ K+ + L++L L+ + +G G+TEG++ I + H E++K+ R
Sbjct: 1 MNLNNKQKQHLKSLAHPLKPVVMLGNNGLTEGVLAEIEQTLEHHELIKVKITAEERETKA 60
Query: 238 RTHDSLERKTGGLVVWRSGSKIILYRGA 265
D++ R+TG V G+ ++LYR A
Sbjct: 61 LIADAIVRETGAANVQIIGNILVLYRPA 88
>gi|152976763|ref|YP_001376280.1| hypothetical protein Bcer98_3059 [Bacillus cytotoxicus NVH 391-98]
gi|152025515|gb|ABS23285.1| protein of unknown function UPF0044 [Bacillus cytotoxicus NVH
391-98]
Length = 96
Score = 41.2 bits (95), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 40/84 (47%)
Query: 180 LSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRT 239
L+GK+ R LR L ++GK G+ E ++ I + E+ K+ C + +
Sbjct: 2 LTGKQKRFLRAKAHHLTPIFQVGKGGVNENMIKQIADALEARELFKVSVLQNCEFDRREV 61
Query: 240 HDSLERKTGGLVVWRSGSKIILYR 263
+ L + G +V GS I+LY+
Sbjct: 62 AEELAQGAGAEIVQVIGSTIVLYK 85
>gi|398398351|ref|XP_003852633.1| fungal transcriptional regulatory protein [Zymoseptoria tritici
IPO323]
gi|339472514|gb|EGP87609.1| fungal transcriptional regulatory protein [Zymoseptoria tritici
IPO323]
Length = 945
Score = 41.2 bits (95), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 59/128 (46%), Gaps = 10/128 (7%)
Query: 96 ETRATDNAGEIFIPLPHRIPKYRVGHTIDDSWSTPEN---PVPVPGTGAAIVRYNQLNKE 152
E RA D G F + +P G +D W N P+ + G A++ RY L ++
Sbjct: 313 EERAMDYFGYFFEHIHPYVPVLNKGAFLD-QWRVARNTISPLLLEGIFASVARY--LEEQ 369
Query: 153 VGRQKWLAKNSKMNEKEKEVPTLAELK---LSGKELRRLRTLGIGLRKKLKIGKAGITEG 209
V ++WLA S+ E+ K+VP L+ ++ + K + G R + K IT G
Sbjct: 370 VESRRWLALASRHEERFKDVPRLSTIQAMLILMKARESISKRGYYYRSWMDT-KYMITMG 428
Query: 210 IVNGIHER 217
+ G+H+
Sbjct: 429 LDLGLHDH 436
>gi|410637116|ref|ZP_11347704.1| RNA-binding protein [Glaciecola lipolytica E3]
gi|410143495|dbj|GAC14909.1| RNA-binding protein [Glaciecola lipolytica E3]
Length = 98
Score = 41.2 bits (95), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 48/91 (52%)
Query: 178 LKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMK 237
+KLS K+ + L+ L L+ +++G G+TEG++ I E++K+ R +
Sbjct: 1 MKLSNKQKQYLKGLAHPLKPVIQLGNNGLTEGVLAEIENALTFHELIKVKVPSDDREEKQ 60
Query: 238 RTHDSLERKTGGLVVWRSGSKIILYRGADYK 268
D++ R+T + + G +I+YR +D K
Sbjct: 61 LIMDAIIRETAAIKLQVIGHTLIMYRQSDEK 91
>gi|221134247|ref|ZP_03560552.1| RNA binding protein; ancient RNA-binding IF3-C fold [Glaciecola sp.
HTCC2999]
Length = 98
Score = 40.8 bits (94), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 49/91 (53%)
Query: 178 LKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMK 237
+KLS K+ + L+ L L+ +++G G TEG++ I H E++K+ R +
Sbjct: 1 MKLSNKQKQYLKGLAHPLKPVVQLGGNGFTEGVLAEIESALAHHELIKVKIPSDDREEKQ 60
Query: 238 RTHDSLERKTGGLVVWRSGSKIILYRGADYK 268
D++ R+TG + V G +++++ ++ K
Sbjct: 61 LIMDAIVRETGAVKVQNIGHILVIFKPSEEK 91
>gi|224285174|gb|ACN40314.1| unknown [Picea sitchensis]
Length = 249
Score = 40.8 bits (94), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 44/94 (46%), Gaps = 3/94 (3%)
Query: 180 LSGKELRRLRTLGIGLRKKLK---IGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNM 236
L+ KE + L L KKLK +GK+G+T + I + E++K+ + C +
Sbjct: 129 LTVKEKKELSAYAHSLGKKLKCHQVGKSGVTSSVEVSISDALEANELIKLKVHNTCPDEL 188
Query: 237 KRTHDSLERKTGGLVVWRSGSKIILYRGADYKYP 270
L+ T +VV + G ILYR + K P
Sbjct: 189 DAVASRLQETTRSVVVGQIGRTFILYRPSPRKVP 222
>gi|326201577|ref|ZP_08191448.1| protein of unknown function UPF0044 [Clostridium papyrosolvens DSM
2782]
gi|325988177|gb|EGD49002.1| protein of unknown function UPF0044 [Clostridium papyrosolvens DSM
2782]
Length = 96
Score = 40.8 bits (94), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 41/84 (48%)
Query: 180 LSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRT 239
L+GK+ LR+L L+ ++GK G+++ ++ + E++K + K
Sbjct: 2 LTGKQRSYLRSLANNLQPIFQVGKGGVSDNMIKQFSDALEARELIKATVLKNAECDTKTI 61
Query: 240 HDSLERKTGGLVVWRSGSKIILYR 263
+ + +T VV GSK +LYR
Sbjct: 62 CEEIAEQTNSQVVQVIGSKFVLYR 85
>gi|331002195|ref|ZP_08325714.1| hypothetical protein HMPREF0491_00576 [Lachnospiraceae oral taxon
107 str. F0167]
gi|330411289|gb|EGG90705.1| hypothetical protein HMPREF0491_00576 [Lachnospiraceae oral taxon
107 str. F0167]
Length = 98
Score = 40.8 bits (94), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%)
Query: 180 LSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRT 239
++ K+ L+ L + + ++IGKA +TE V I E E++KI C + K
Sbjct: 1 MNSKQRAYLKGLAMNIDPIMQIGKASLTEENVFAIAEAMEPRELIKISVLKNCTDDPKMI 60
Query: 240 HDSLERKTGGLVVWRSGSKIILYRGAD 266
+ + T VV G KI+LY+ AD
Sbjct: 61 ANEIANLTRSEVVQVIGKKIVLYKQAD 87
>gi|404417970|ref|ZP_10999752.1| hypothetical protein SARL_08824 [Staphylococcus arlettae CVD059]
gi|403489686|gb|EJY95249.1| hypothetical protein SARL_08824 [Staphylococcus arlettae CVD059]
Length = 96
Score = 40.8 bits (94), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 45/87 (51%), Gaps = 6/87 (6%)
Query: 180 LSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRT 239
L+GK+ R LR+ + +IGKAG+ + +V I E E++K+ + + N +
Sbjct: 2 LTGKQKRFLRSKAHNIDPTFQIGKAGVNDNMVAQIAELLEKRELIKV---HILQNNFEDK 58
Query: 240 HD---SLERKTGGLVVWRSGSKIILYR 263
+D L TG +V GS I+LY+
Sbjct: 59 NDLAQELSDATGSQIVQVIGSMIVLYK 85
>gi|167756986|ref|ZP_02429113.1| hypothetical protein CLORAM_02535 [Clostridium ramosum DSM 1402]
gi|237732928|ref|ZP_04563409.1| cation antiporter [Mollicutes bacterium D7]
gi|365833457|ref|ZP_09374973.1| hypothetical protein HMPREF1021_03737 [Coprobacillus sp. 3_3_56FAA]
gi|374625565|ref|ZP_09697981.1| YhbY family putative RNA-binding protein [Coprobacillus sp.
8_2_54BFAA]
gi|167703161|gb|EDS17740.1| RNA-binding protein, YhbY family [Clostridium ramosum DSM 1402]
gi|229383997|gb|EEO34088.1| cation antiporter [Coprobacillus sp. D7]
gi|365257901|gb|EHM87924.1| hypothetical protein HMPREF1021_03737 [Coprobacillus sp. 3_3_56FAA]
gi|373915225|gb|EHQ46996.1| YhbY family putative RNA-binding protein [Coprobacillus sp.
8_2_54BFAA]
Length = 95
Score = 40.8 bits (94), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 45/94 (47%), Gaps = 3/94 (3%)
Query: 180 LSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRT 239
L+GK+ R LR + L +IGK G+ + + GI + E++K+ + C +
Sbjct: 2 LTGKQKRYLRGIAHNLNAIFQIGKEGVHQTQIEGIDDALEAHELIKVKILESCADSKNEI 61
Query: 240 HDSLERKTGGLVVWRSGSKIILYRGAD---YKYP 270
L KT VV G IILYR ++ YK P
Sbjct: 62 ALELSMKTKADVVQILGRTIILYRPSEKEIYKLP 95
>gi|314933765|ref|ZP_07841130.1| probable RNA-binding protein YqeI [Staphylococcus caprae C87]
gi|313653915|gb|EFS17672.1| probable RNA-binding protein YqeI [Staphylococcus caprae C87]
Length = 96
Score = 40.8 bits (94), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 44/94 (46%)
Query: 180 LSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRT 239
L+GK+ R LR+L +IGK GI E +++ I E E++KI +
Sbjct: 2 LTGKQKRYLRSLAHNTDPTFQIGKGGINENMISQIDETLEKRELIKIHVLQNNFDDKNEL 61
Query: 240 HDSLERKTGGLVVWRSGSKIILYRGADYKYPYFL 273
+ L + T +V GS I+LY+ + FL
Sbjct: 62 ANELSQATKSELVQVIGSMIVLYKESQENKDIFL 95
>gi|78485155|ref|YP_391080.1| hypothetical protein Tcr_0810 [Thiomicrospira crunogena XCL-2]
gi|78363441|gb|ABB41406.1| Conserved hypothetical protein with a CRS1 / YhbY domain
[Thiomicrospira crunogena XCL-2]
Length = 101
Score = 40.8 bits (94), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 46/88 (52%)
Query: 179 KLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKR 238
KLS +++ L+ + GL + IG G+TE ++ + + H E++KI R + K
Sbjct: 6 KLSKNQIKFLKGIAHGLNPIIIIGANGVTESLMEELEKTLEHHELLKIKMASAERSDRKE 65
Query: 239 THDSLERKTGGLVVWRSGSKIILYRGAD 266
D + + TG +V G ++++R ++
Sbjct: 66 IIDYILQNTGAQLVQSIGKTVVIFRQSE 93
>gi|229552535|ref|ZP_04441260.1| RNA-binding protein [Lactobacillus rhamnosus LMS2-1]
gi|229314087|gb|EEN80060.1| RNA-binding protein [Lactobacillus rhamnosus LMS2-1]
Length = 141
Score = 40.8 bits (94), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 63/151 (41%), Gaps = 27/151 (17%)
Query: 117 YRVGHTIDDSWSTPENPVPVPGTGAAIVRYNQLNKEVGRQKWLAKNSKMNEKEKEVPTLA 176
Y V H + + P+ P G G A QLN ++ V +
Sbjct: 3 YYVKHLFKRAAANPQRPKSCTGGGKA----AQLN------------------QRSVKNM- 39
Query: 177 ELKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNM 236
L+GK+ R LR+L + + +++GK G+ + V G+ + E+VKI
Sbjct: 40 ---LTGKQKRYLRSLAMTTKPLIQVGKNGLGDAFVAGVKDAIETRELVKISLLPTADDTP 96
Query: 237 KRTHDSLERKTGGL-VVWRSGSKIILYRGAD 266
+ D+L+ GL V G +I+Y+ A+
Sbjct: 97 QEVADTLQAAIAGLEVAQIIGRTVIVYKQAE 127
>gi|440285998|ref|YP_007338763.1| putative RNA-binding protein, YhbY family [Enterobacteriaceae
bacterium strain FGI 57]
gi|440045520|gb|AGB76578.1| putative RNA-binding protein, YhbY family [Enterobacteriaceae
bacterium strain FGI 57]
Length = 110
Score = 40.4 bits (93), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 44/86 (51%)
Query: 178 LKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMK 237
+ LS K+ + L+ L L+ + +G G+TEG++ I + H E++K+ R
Sbjct: 14 MNLSTKQKQHLKGLAHPLKPVVMLGNNGLTEGVLAEIEQALEHHELIKVKVASEDRETKT 73
Query: 238 RTHDSLERKTGGLVVWRSGSKIILYR 263
D++ R+TG V G ++LYR
Sbjct: 74 LIVDAIVRETGACNVQVIGKMLVLYR 99
>gi|268592833|ref|ZP_06127054.1| RNA-binding protein YhbY [Providencia rettgeri DSM 1131]
gi|422007184|ref|ZP_16354170.1| RNA-binding protein [Providencia rettgeri Dmel1]
gi|291311619|gb|EFE52072.1| RNA-binding protein YhbY [Providencia rettgeri DSM 1131]
gi|414097074|gb|EKT58729.1| RNA-binding protein [Providencia rettgeri Dmel1]
Length = 97
Score = 40.4 bits (93), Expect = 4.8, Method: Composition-based stats.
Identities = 27/92 (29%), Positives = 48/92 (52%), Gaps = 1/92 (1%)
Query: 178 LKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMK 237
+ L+ K+++ L++L L + IG G+TEG++ I H E++K+ R
Sbjct: 1 MNLNKKQIQHLKSLAHHLNPVVMIGNNGLTEGVLAEIELSLAHHELIKVKIAGEDRDTKN 60
Query: 238 RTHDSLERKTGGLVVWRSGSKIILYR-GADYK 268
D++ R+TG + V G +++YR AD K
Sbjct: 61 LIADAIVRETGAVNVQIIGKILVIYRPSADRK 92
>gi|16762060|ref|NP_457677.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Typhi str. CT18]
gi|29143549|ref|NP_806891.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Typhi str. Ty2]
gi|56415227|ref|YP_152302.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Paratyphi A str. ATCC 9150]
gi|62181806|ref|YP_218223.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Choleraesuis str. SC-B67]
gi|161506139|ref|YP_001573251.1| RNA-binding protein YhbY [Salmonella enterica subsp. arizonae
serovar 62:z4,z23:- str. RSK2980]
gi|161616305|ref|YP_001590270.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Paratyphi B str. SPB7]
gi|167552056|ref|ZP_02345809.1| putative RNA-binding protein [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA29]
gi|167995304|ref|ZP_02576394.1| putative RNA-binding protein [Salmonella enterica subsp. enterica
serovar 4,[5],12:i:- str. CVM23701]
gi|168231906|ref|ZP_02656964.1| putative RNA-binding protein [Salmonella enterica subsp. enterica
serovar Kentucky str. CDC 191]
gi|168237997|ref|ZP_02663055.1| putative RNA-binding protein [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. SL480]
gi|168243131|ref|ZP_02668063.1| putative RNA-binding protein [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL486]
gi|168262692|ref|ZP_02684665.1| putative RNA-binding protein [Salmonella enterica subsp. enterica
serovar Hadar str. RI_05P066]
gi|168463480|ref|ZP_02697397.1| putative RNA-binding protein [Salmonella enterica subsp. enterica
serovar Newport str. SL317]
gi|168819636|ref|ZP_02831636.1| putative RNA-binding protein [Salmonella enterica subsp. enterica
serovar Weltevreden str. HI_N05-537]
gi|194446513|ref|YP_002042554.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Newport str. SL254]
gi|194449616|ref|YP_002047326.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL476]
gi|194472937|ref|ZP_03078921.1| putative RNA-binding protein [Salmonella enterica subsp. enterica
serovar Kentucky str. CVM29188]
gi|194737292|ref|YP_002116246.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. CVM19633]
gi|197249374|ref|YP_002148222.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Agona str. SL483]
gi|197265486|ref|ZP_03165560.1| putative RNA-binding protein [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA23]
gi|197364157|ref|YP_002143794.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Paratyphi A str. AKU_12601]
gi|198244680|ref|YP_002217270.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Dublin str. CT_02021853]
gi|200386795|ref|ZP_03213407.1| putative RNA-binding protein [Salmonella enterica subsp. enterica
serovar Virchow str. SL491]
gi|204931224|ref|ZP_03222018.1| putative RNA-binding protein [Salmonella enterica subsp. enterica
serovar Javiana str. GA_MM04042433]
gi|213027548|ref|ZP_03341995.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Typhi str. 404ty]
gi|213162025|ref|ZP_03347735.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Typhi str. E00-7866]
gi|213421312|ref|ZP_03354378.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Typhi str. E01-6750]
gi|213425424|ref|ZP_03358174.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Typhi str. E02-1180]
gi|213584092|ref|ZP_03365918.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Typhi str. E98-0664]
gi|213622211|ref|ZP_03374994.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Typhi str. E98-2068]
gi|213646995|ref|ZP_03377048.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Typhi str. J185]
gi|213852788|ref|ZP_03382320.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Typhi str. M223]
gi|224585093|ref|YP_002638892.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
gi|238910091|ref|ZP_04653928.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Tennessee str. CDC07-0191]
gi|289825809|ref|ZP_06544977.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Typhi str. E98-3139]
gi|340000855|ref|YP_004731739.1| hypothetical protein SBG_2926 [Salmonella bongori NCTC 12419]
gi|374979321|ref|ZP_09720660.1| RNA binding protein [Salmonella enterica subsp. enterica serovar
Typhimurium str. TN061786]
gi|375003160|ref|ZP_09727500.1| hypothetical protein SEENIN0B_03528 [Salmonella enterica subsp.
enterica serovar Infantis str. SARB27]
gi|375116147|ref|ZP_09761317.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Choleraesuis str. SCSA50]
gi|375120781|ref|ZP_09765948.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Dublin str. SD3246]
gi|375125070|ref|ZP_09770234.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Gallinarum str. SG9]
gi|378446684|ref|YP_005234316.1| hypothetical protein [Salmonella enterica subsp. enterica serovar
Typhimurium str. D23580]
gi|378956910|ref|YP_005214397.1| hypothetical protein SPUL_3306 [Salmonella enterica subsp. enterica
serovar Gallinarum/pullorum str. RKS5078]
gi|378961389|ref|YP_005218875.1| hypothetical protein STBHUCCB_33980 [Salmonella enterica subsp.
enterica serovar Typhi str. P-stx-12]
gi|378985893|ref|YP_005249049.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Typhimurium str. T000240]
gi|378990608|ref|YP_005253772.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Typhimurium str. UK-1]
gi|383497952|ref|YP_005398641.1| hypothetical protein UMN798_3588 [Salmonella enterica subsp.
enterica serovar Typhimurium str. 798]
gi|386592982|ref|YP_006089382.1| CRS1 / YhbY (CRM) RNA binding protein [Salmonella enterica subsp.
enterica serovar Heidelberg str. B182]
gi|409247008|ref|YP_006887710.1| CRS2-associated factor 2, mitochondrial Flags: Precursor
[Salmonella enterica subsp. enterica serovar Weltevreden
str. 2007-60-3289-1]
gi|416423871|ref|ZP_11691205.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. 315996572]
gi|416433534|ref|ZP_11696994.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-1]
gi|416440937|ref|ZP_11701247.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-3]
gi|416447937|ref|ZP_11706141.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-4]
gi|416454503|ref|ZP_11710353.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. 515920-1]
gi|416460977|ref|ZP_11715085.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. 515920-2]
gi|416462714|ref|ZP_11715636.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. 531954]
gi|416475235|ref|ZP_11720528.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. NC_MB110209-0054]
gi|416492603|ref|ZP_11727532.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. OH_2009072675]
gi|416498668|ref|ZP_11730424.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. CASC_09SCPH15965]
gi|416505818|ref|ZP_11734164.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. SARB31]
gi|416516100|ref|ZP_11738978.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. ATCC BAA710]
gi|416526936|ref|ZP_11742774.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. LQC 10]
gi|416534131|ref|ZP_11746949.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. SARB30]
gi|416546591|ref|ZP_11753985.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. 19N]
gi|416553491|ref|ZP_11757742.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. 29N]
gi|416557648|ref|ZP_11759674.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. 42N]
gi|416568324|ref|ZP_11764676.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. 4441 H]
gi|416577470|ref|ZP_11769806.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. 81038-01]
gi|416586116|ref|ZP_11775361.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. MD_MDA09249507]
gi|416589290|ref|ZP_11776942.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. 414877]
gi|416600933|ref|ZP_11784696.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. 366867]
gi|416605407|ref|ZP_11786895.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. 413180]
gi|416614888|ref|ZP_11793088.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. 446600]
gi|416618513|ref|ZP_11794608.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. 609458-1]
gi|416629750|ref|ZP_11800313.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. 556150-1]
gi|416638425|ref|ZP_11803896.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. 609460]
gi|416659213|ref|ZP_11814691.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. 556152]
gi|416670521|ref|ZP_11820159.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. MB101509-0077]
gi|416678878|ref|ZP_11822809.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. MB102109-0047]
gi|416699896|ref|ZP_11828910.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. MB110209-0055]
gi|416706507|ref|ZP_11831719.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. MB111609-0052]
gi|416714057|ref|ZP_11837508.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. 2009083312]
gi|416718702|ref|ZP_11840810.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. 2009085258]
gi|416725807|ref|ZP_11846030.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. 315731156]
gi|416732932|ref|ZP_11850023.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2009159199]
gi|416736446|ref|ZP_11852073.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008282]
gi|416750639|ref|ZP_11859809.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008283]
gi|416754926|ref|ZP_11861718.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008284]
gi|416765650|ref|ZP_11868955.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008285]
gi|416771457|ref|ZP_11872722.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008287]
gi|417329017|ref|ZP_12113985.1| RNA binding protein [Salmonella enterica subsp. enterica serovar
Adelaide str. A4-669]
gi|417343990|ref|ZP_12124444.1| RNA binding protein [Salmonella enterica subsp. enterica serovar
Baildon str. R6-199]
gi|417352463|ref|ZP_12129676.1| RNA binding protein [Salmonella enterica subsp. enterica serovar
Gaminara str. A4-567]
gi|417360932|ref|ZP_12134943.1| RNA binding protein [Salmonella enterica subsp. enterica serovar
Give str. S5-487]
gi|417368230|ref|ZP_12139855.1| RNA binding protein [Salmonella enterica subsp. enterica serovar
Hvittingfoss str. A4-620]
gi|417376094|ref|ZP_12145381.1| RNA binding protein [Salmonella enterica subsp. enterica serovar
Inverness str. R8-3668]
gi|417386033|ref|ZP_12150844.1| RNA binding protein [Salmonella enterica subsp. enterica serovar
Johannesburg str. S5-703]
gi|417393775|ref|ZP_12156180.1| RNA binding protein [Salmonella enterica subsp. enterica serovar
Minnesota str. A4-603]
gi|417429357|ref|ZP_12161003.1| RNA binding protein [Salmonella enterica subsp. enterica serovar
Mississippi str. A4-633]
gi|417469993|ref|ZP_12166255.1| RNA binding protein [Salmonella enterica subsp. enterica serovar
Montevideo str. S5-403]
gi|417483825|ref|ZP_12172207.1| RNA binding protein [Salmonella enterica subsp. enterica serovar
Rubislaw str. A4-653]
gi|417513824|ref|ZP_12177786.1| RNA binding protein [Salmonella enterica subsp. enterica serovar
Senftenberg str. A4-543]
gi|417520819|ref|ZP_12182655.1| RNA binding protein [Salmonella enterica subsp. enterica serovar
Uganda str. R8-3404]
gi|417534185|ref|ZP_12188021.1| RNA binding protein [Salmonella enterica subsp. enterica serovar
Urbana str. R8-2977]
gi|417542004|ref|ZP_12193578.1| RNA binding protein [Salmonella enterica subsp. enterica serovar
Wandsworth str. A4-580]
gi|418482436|ref|ZP_13051452.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. 80959-06]
gi|418507264|ref|ZP_13073588.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035327]
gi|418511417|ref|ZP_13077677.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Pomona str. ATCC 10729]
gi|418759815|ref|ZP_13315992.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35185]
gi|418765942|ref|ZP_13322021.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35199]
gi|418771268|ref|ZP_13327275.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21539]
gi|418774007|ref|ZP_13329980.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Newport str. CVM 33953]
gi|418778048|ref|ZP_13333962.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35188]
gi|418786346|ref|ZP_13342162.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21559]
gi|418788866|ref|ZP_13344658.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19447]
gi|418794401|ref|ZP_13350122.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19449]
gi|418797601|ref|ZP_13353287.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19567]
gi|418802017|ref|ZP_13357649.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35202]
gi|418806503|ref|ZP_13362075.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21550]
gi|418810663|ref|ZP_13366203.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Newport str. CVM 22513]
gi|418824406|ref|ZP_13379768.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Newport str. CVM 22462]
gi|418831241|ref|ZP_13386199.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Newport str. CVM N18486]
gi|418837473|ref|ZP_13392347.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Newport str. CVM N1543]
gi|418842287|ref|ZP_13397097.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21554]
gi|418847017|ref|ZP_13401782.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19443]
gi|418851445|ref|ZP_13406157.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Newport str. CVM 37978]
gi|418855918|ref|ZP_13410566.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19593]
gi|418857682|ref|ZP_13412307.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19470]
gi|418862843|ref|ZP_13417382.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19536]
gi|418869493|ref|ZP_13423926.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Newport str. CVM 4176]
gi|419786769|ref|ZP_14312484.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Newport str. Levine 1]
gi|419793145|ref|ZP_14318768.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Newport str. Levine 15]
gi|421887015|ref|ZP_16318179.1| putative RNA-binding protein [Salmonella enterica subsp. enterica
serovar Senftenberg str. SS209]
gi|423141823|ref|ZP_17129461.1| hypothetical protein SEHO0A_03387 [Salmonella enterica subsp.
houtenae str. ATCC BAA-1581]
gi|25329776|pir||AI0902 conserved hypothetical protein STY3476 [imported] - Salmonella
enterica subsp. enterica serovar Typhi (strain CT18)
gi|16421856|gb|AAL22168.1| putative RNA-binding protein [Salmonella enterica subsp. enterica
serovar Typhimurium str. LT2]
gi|16504363|emb|CAD07815.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Typhi]
gi|29139184|gb|AAO70751.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Typhi str. Ty2]
gi|56129484|gb|AAV78990.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Paratyphi A str. ATCC 9150]
gi|62129439|gb|AAX67142.1| putative RNA-binding protein containing KH domain [Salmonella
enterica subsp. enterica serovar Choleraesuis str.
SC-B67]
gi|160867486|gb|ABX24109.1| hypothetical protein SARI_04327 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:-]
gi|161365669|gb|ABX69437.1| hypothetical protein SPAB_04113 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|194405176|gb|ACF65398.1| putative RNA-binding protein [Salmonella enterica subsp. enterica
serovar Newport str. SL254]
gi|194407920|gb|ACF68139.1| putative RNA-binding protein [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL476]
gi|194459301|gb|EDX48140.1| putative RNA-binding protein [Salmonella enterica subsp. enterica
serovar Kentucky str. CVM29188]
gi|194712794|gb|ACF92015.1| putative RNA-binding protein [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. CVM19633]
gi|195633616|gb|EDX52030.1| putative RNA-binding protein [Salmonella enterica subsp. enterica
serovar Newport str. SL317]
gi|197095634|emb|CAR61202.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Paratyphi A str. AKU_12601]
gi|197213077|gb|ACH50474.1| putative RNA-binding protein [Salmonella enterica subsp. enterica
serovar Agona str. SL483]
gi|197243741|gb|EDY26361.1| putative RNA-binding protein [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA23]
gi|197289071|gb|EDY28440.1| putative RNA-binding protein [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. SL480]
gi|197939196|gb|ACH76529.1| putative RNA-binding protein [Salmonella enterica subsp. enterica
serovar Dublin str. CT_02021853]
gi|199603893|gb|EDZ02438.1| putative RNA-binding protein [Salmonella enterica subsp. enterica
serovar Virchow str. SL491]
gi|204319991|gb|EDZ05197.1| putative RNA-binding protein [Salmonella enterica subsp. enterica
serovar Javiana str. GA_MM04042433]
gi|205323204|gb|EDZ11043.1| putative RNA-binding protein [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA29]
gi|205327002|gb|EDZ13766.1| putative RNA-binding protein [Salmonella enterica subsp. enterica
serovar 4,[5],12:i:- str. CVM23701]
gi|205333735|gb|EDZ20499.1| putative RNA-binding protein [Salmonella enterica subsp. enterica
serovar Kentucky str. CDC 191]
gi|205337825|gb|EDZ24589.1| putative RNA-binding protein [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL486]
gi|205343302|gb|EDZ30066.1| putative RNA-binding protein [Salmonella enterica subsp. enterica
serovar Weltevreden str. HI_N05-537]
gi|205348350|gb|EDZ34981.1| putative RNA-binding protein [Salmonella enterica subsp. enterica
serovar Hadar str. RI_05P066]
gi|224469621|gb|ACN47451.1| hypothetical protein SPC_3366 [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
gi|261248463|emb|CBG26300.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Typhimurium str. D23580]
gi|312914322|dbj|BAJ38296.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Typhimurium str. T000240]
gi|320087742|emb|CBY97506.1| CRS2-associated factor 2, mitochondrial Flags: Precursor
[Salmonella enterica subsp. enterica serovar Weltevreden
str. 2007-60-3289-1]
gi|321225981|gb|EFX51035.1| RNA binding protein [Salmonella enterica subsp. enterica serovar
Typhimurium str. TN061786]
gi|322615301|gb|EFY12222.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. 315996572]
gi|322618340|gb|EFY15231.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-1]
gi|322622855|gb|EFY19699.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-3]
gi|322626823|gb|EFY23620.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-4]
gi|322631392|gb|EFY28152.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. 515920-1]
gi|322635341|gb|EFY32055.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. 515920-2]
gi|322643340|gb|EFY39904.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. 531954]
gi|322647088|gb|EFY43589.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. NC_MB110209-0054]
gi|322648891|gb|EFY45336.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. OH_2009072675]
gi|322655083|gb|EFY51394.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. CASC_09SCPH15965]
gi|322657686|gb|EFY53954.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. 19N]
gi|322664182|gb|EFY60380.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. 81038-01]
gi|322667465|gb|EFY63627.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. MD_MDA09249507]
gi|322674713|gb|EFY70805.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. 414877]
gi|322675654|gb|EFY71727.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. 366867]
gi|322682290|gb|EFY78313.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. 413180]
gi|322684893|gb|EFY80891.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. 446600]
gi|322716293|gb|EFZ07864.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Choleraesuis str. SCSA50]
gi|323195902|gb|EFZ81073.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. 609458-1]
gi|323199019|gb|EFZ84116.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. 556150-1]
gi|323204281|gb|EFZ89290.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. 609460]
gi|323211319|gb|EFZ96163.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. 556152]
gi|323214739|gb|EFZ99488.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. MB101509-0077]
gi|323221219|gb|EGA05645.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. MB102109-0047]
gi|323224040|gb|EGA08333.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. MB110209-0055]
gi|323230311|gb|EGA14430.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. MB111609-0052]
gi|323233287|gb|EGA17381.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. 2009083312]
gi|323239324|gb|EGA23374.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. 2009085258]
gi|323242425|gb|EGA26451.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. 315731156]
gi|323246935|gb|EGA30901.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2009159199]
gi|323254132|gb|EGA37952.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008282]
gi|323255249|gb|EGA39026.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008283]
gi|323262712|gb|EGA46268.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008284]
gi|323264022|gb|EGA47530.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008285]
gi|323269408|gb|EGA52863.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008287]
gi|326625048|gb|EGE31393.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Dublin str. SD3246]
gi|326629320|gb|EGE35663.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Gallinarum str. SG9]
gi|332990155|gb|AEF09138.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Typhimurium str. UK-1]
gi|339514217|emb|CCC31980.1| conserved hypothetical protein [Salmonella bongori NCTC 12419]
gi|353077848|gb|EHB43608.1| hypothetical protein SEENIN0B_03528 [Salmonella enterica subsp.
enterica serovar Infantis str. SARB27]
gi|353566179|gb|EHC31739.1| RNA binding protein [Salmonella enterica subsp. enterica serovar
Adelaide str. A4-669]
gi|353566501|gb|EHC31958.1| RNA binding protein [Salmonella enterica subsp. enterica serovar
Gaminara str. A4-567]
gi|353585414|gb|EHC45256.1| RNA binding protein [Salmonella enterica subsp. enterica serovar
Give str. S5-487]
gi|353587173|gb|EHC46555.1| RNA binding protein [Salmonella enterica subsp. enterica serovar
Hvittingfoss str. A4-620]
gi|353594339|gb|EHC51880.1| RNA binding protein [Salmonella enterica subsp. enterica serovar
Inverness str. R8-3668]
gi|353604414|gb|EHC59209.1| RNA binding protein [Salmonella enterica subsp. enterica serovar
Johannesburg str. S5-703]
gi|353607688|gb|EHC61489.1| RNA binding protein [Salmonella enterica subsp. enterica serovar
Minnesota str. A4-603]
gi|353615604|gb|EHC67087.1| RNA binding protein [Salmonella enterica subsp. enterica serovar
Mississippi str. A4-633]
gi|353626302|gb|EHC74875.1| RNA binding protein [Salmonella enterica subsp. enterica serovar
Montevideo str. S5-403]
gi|353634660|gb|EHC81178.1| RNA binding protein [Salmonella enterica subsp. enterica serovar
Rubislaw str. A4-653]
gi|353635704|gb|EHC81944.1| RNA binding protein [Salmonella enterica subsp. enterica serovar
Senftenberg str. A4-543]
gi|353642993|gb|EHC87292.1| RNA binding protein [Salmonella enterica subsp. enterica serovar
Uganda str. R8-3404]
gi|353659200|gb|EHC99165.1| RNA binding protein [Salmonella enterica subsp. enterica serovar
Urbana str. R8-2977]
gi|353659597|gb|EHC99442.1| RNA binding protein [Salmonella enterica subsp. enterica serovar
Wandsworth str. A4-580]
gi|357207521|gb|AET55567.1| hypothetical protein SPUL_3306 [Salmonella enterica subsp. enterica
serovar Gallinarum/pullorum str. RKS5078]
gi|357954734|gb|EHJ80797.1| RNA binding protein [Salmonella enterica subsp. enterica serovar
Baildon str. R6-199]
gi|363555635|gb|EHL39859.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. SARB31]
gi|363556591|gb|EHL40804.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. LQC 10]
gi|363562811|gb|EHL46900.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. 29N]
gi|363562929|gb|EHL47016.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. ATCC BAA710]
gi|363567755|gb|EHL51753.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. SARB30]
gi|363577669|gb|EHL61488.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. 4441 H]
gi|363578497|gb|EHL62306.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. 42N]
gi|366063467|gb|EHN27685.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. 80959-06]
gi|366081572|gb|EHN45515.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035327]
gi|366084742|gb|EHN48642.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Pomona str. ATCC 10729]
gi|374355261|gb|AEZ47022.1| hypothetical protein STBHUCCB_33980 [Salmonella enterica subsp.
enterica serovar Typhi str. P-stx-12]
gi|379050995|gb|EHY68887.1| hypothetical protein SEHO0A_03387 [Salmonella enterica subsp.
houtenae str. ATCC BAA-1581]
gi|379983392|emb|CCF90452.1| putative RNA-binding protein [Salmonella enterica subsp. enterica
serovar Senftenberg str. SS209]
gi|380464773|gb|AFD60176.1| hypothetical protein UMN798_3588 [Salmonella enterica subsp.
enterica serovar Typhimurium str. 798]
gi|383800023|gb|AFH47105.1| CRS1 / YhbY (CRM) RNA binding protein [Salmonella enterica subsp.
enterica serovar Heidelberg str. B182]
gi|392617124|gb|EIW99549.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Newport str. Levine 15]
gi|392620712|gb|EIX03078.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Newport str. Levine 1]
gi|392733796|gb|EIZ90987.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21539]
gi|392738660|gb|EIZ95800.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35199]
gi|392745456|gb|EJA02489.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35185]
gi|392748310|gb|EJA05297.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21559]
gi|392753047|gb|EJA09987.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Newport str. CVM 33953]
gi|392756512|gb|EJA13408.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35188]
gi|392761791|gb|EJA18610.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19449]
gi|392761924|gb|EJA18742.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19447]
gi|392769040|gb|EJA25786.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19567]
gi|392779469|gb|EJA36138.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35202]
gi|392781611|gb|EJA38252.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Newport str. CVM 22513]
gi|392783120|gb|EJA39750.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21550]
gi|392798993|gb|EJA55262.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Newport str. CVM N1543]
gi|392800437|gb|EJA56675.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Newport str. CVM N18486]
gi|392806858|gb|EJA62942.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21554]
gi|392809488|gb|EJA65525.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19443]
gi|392817592|gb|EJA73502.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Newport str. CVM 37978]
gi|392820268|gb|EJA76118.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19593]
gi|392822669|gb|EJA78474.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Newport str. CVM 22462]
gi|392834240|gb|EJA89850.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19536]
gi|392834751|gb|EJA90353.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19470]
gi|392835956|gb|EJA91544.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Newport str. CVM 4176]
Length = 110
Score = 40.4 bits (93), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 44/86 (51%)
Query: 178 LKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMK 237
+ LS K+ + L+ L L+ + +G G+TEG++ I + H E++K+ R
Sbjct: 14 MNLSTKQKQHLKGLAHPLKPVVMLGNNGLTEGVLAEIEQALEHHELIKVKIASEDRETKT 73
Query: 238 RTHDSLERKTGGLVVWRSGSKIILYR 263
D++ R+TG V G ++LYR
Sbjct: 74 LIVDAIVRETGACNVQVIGKTLVLYR 99
>gi|313888400|ref|ZP_07822068.1| RNA-binding protein, YhbY family [Peptoniphilus harei
ACS-146-V-Sch2b]
gi|312845597|gb|EFR32990.1| RNA-binding protein, YhbY family [Peptoniphilus harei
ACS-146-V-Sch2b]
Length = 95
Score = 40.4 bits (93), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 42/84 (50%)
Query: 180 LSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRT 239
L+GKE L++L + +++GK GI EG ++ I + E+VKI + +
Sbjct: 2 LTGKERSYLKSLAHNMDPLIQLGKDGINEGFLSQIDKLLEDHEIVKINVLQNAPVEVDEI 61
Query: 240 HDSLERKTGGLVVWRSGSKIILYR 263
D + TG V + G K+ +YR
Sbjct: 62 VDDILDATGAEFVQKIGKKLTIYR 85
>gi|260596193|ref|YP_003208764.1| RNA-binding protein YhbY [Cronobacter turicensis z3032]
gi|429089294|ref|ZP_19152026.1| FIG004454: RNA binding protein [Cronobacter universalis NCTC 9529]
gi|429102970|ref|ZP_19164944.1| FIG004454: RNA binding protein [Cronobacter turicensis 564]
gi|260215370|emb|CBA27385.1| RNA-binding protein yhbY [Cronobacter turicensis z3032]
gi|426289619|emb|CCJ91057.1| FIG004454: RNA binding protein [Cronobacter turicensis 564]
gi|426509097|emb|CCK17138.1| FIG004454: RNA binding protein [Cronobacter universalis NCTC 9529]
Length = 97
Score = 40.4 bits (93), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 178 LKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEV--VKIVCEDLCRLN 235
+ LS K+ + L+ L L+ + +G G+TEG++ I + H E+ VKI ED R
Sbjct: 1 MNLSTKQKQHLKGLAHPLKPVVMLGNNGLTEGVLAEIEQALEHHELIKVKIATED--RET 58
Query: 236 MKRTHDSLERKTGGLVVWRSGSKIILYR 263
D++ R+TG V G ++LYR
Sbjct: 59 KTLVVDAIVRETGACNVQVIGKTLVLYR 86
>gi|329770261|ref|ZP_08261650.1| RNA-binding protein yqeI [Gemella sanguinis M325]
gi|328836965|gb|EGF86611.1| RNA-binding protein yqeI [Gemella sanguinis M325]
Length = 99
Score = 40.4 bits (93), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 43/84 (51%)
Query: 180 LSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRT 239
L GK+ R+LR+L L ++GK+G+T ++ GI + E++K+ C +
Sbjct: 2 LKGKQKRQLRSLAHHLSPIFQVGKSGVTSEMIQGIRDALEKRELIKVSILQNCEEDKDVV 61
Query: 240 HDSLERKTGGLVVWRSGSKIILYR 263
+ L +T +V G I+LY+
Sbjct: 62 AELLSERTSSELVQVIGHTIVLYK 85
>gi|289422604|ref|ZP_06424446.1| CRS1/YhbY domain protein [Peptostreptococcus anaerobius 653-L]
gi|429727630|ref|ZP_19262394.1| RNA-binding protein, YhbY family [Peptostreptococcus anaerobius VPI
4330]
gi|289156955|gb|EFD05578.1| CRS1/YhbY domain protein [Peptostreptococcus anaerobius 653-L]
gi|429151934|gb|EKX94775.1| RNA-binding protein, YhbY family [Peptostreptococcus anaerobius VPI
4330]
Length = 134
Score = 40.4 bits (93), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 45/84 (53%)
Query: 180 LSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRT 239
L+GK+ L++L G++ +IGK GI++ ++ + ++ R E+VK+ D C ++ K
Sbjct: 2 LNGKKRSYLKSLANGIKSTNQIGKDGISKEFLDQLDDQLRAREIVKVTILDNCGIDAKEA 61
Query: 240 HDSLERKTGGLVVWRSGSKIILYR 263
+ + V G+K +Y+
Sbjct: 62 ANHVCEAIRAEFVQAIGNKFTIYK 85
>gi|253997069|ref|YP_003049133.1| hypothetical protein Mmol_1702 [Methylotenera mobilis JLW8]
gi|253983748|gb|ACT48606.1| protein of unknown function UPF0044 [Methylotenera mobilis JLW8]
Length = 102
Score = 40.4 bits (93), Expect = 5.3, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 42/88 (47%)
Query: 178 LKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMK 237
+KLS K++ LR L L + IG G+TE +V I E++K+ R+ K
Sbjct: 1 MKLSTKQIAHLRGLAHSLNPVVMIGNNGLTENVVKEIELNLNVHELIKVQVAGDDRVARK 60
Query: 238 RTHDSLERKTGGLVVWRSGSKIILYRGA 265
D + + T + V G +++ YR +
Sbjct: 61 AIFDEICKLTNAVAVHHIGKQLVFYRAS 88
>gi|299144204|ref|ZP_07037284.1| probable RNA-binding protein YqeI [Peptoniphilus sp. oral taxon 386
str. F0131]
gi|298518689|gb|EFI42428.1| probable RNA-binding protein YqeI [Peptoniphilus sp. oral taxon 386
str. F0131]
Length = 95
Score = 40.4 bits (93), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 45/84 (53%)
Query: 180 LSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRT 239
++G++ L++L L L++GK G+TE ++ I E + E+VKI + +
Sbjct: 2 ITGRQRSYLKSLANTLNPLLQVGKNGVTENLIKQIDELLEYHELVKITVLKNSPVYAREI 61
Query: 240 HDSLERKTGGLVVWRSGSKIILYR 263
+ + +TG V + G+K+ +YR
Sbjct: 62 VEEILEQTGAEFVQQIGNKLTIYR 85
>gi|395232741|ref|ZP_10410990.1| RNA-binding protein YhbY [Enterobacter sp. Ag1]
gi|394732822|gb|EJF32468.1| RNA-binding protein YhbY [Enterobacter sp. Ag1]
Length = 97
Score = 40.4 bits (93), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 178 LKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEV--VKIVCEDLCRLN 235
+ LS K+ + L+ L L+ + +G G+TEG++ I + H E+ VKI ED R
Sbjct: 1 MNLSTKQKQHLKGLAHPLKPVVMLGNNGLTEGVLAEIEQALEHHELIKVKIATED--RET 58
Query: 236 MKRTHDSLERKTGGLVVWRSGSKIILYR 263
D++ R+TG V G ++LYR
Sbjct: 59 KTLIVDAIVRETGACNVQVIGKTLVLYR 86
>gi|297824987|ref|XP_002880376.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297326215|gb|EFH56635.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 116
Score = 40.4 bits (93), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 46/90 (51%), Gaps = 5/90 (5%)
Query: 178 LKLSGKELRRL----RTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCR 233
L+LS KE R+L TLG L+ +L +GK+G+T+ +V E E++K+ C
Sbjct: 11 LELSAKEKRKLASYAHTLGDKLKSQL-VGKSGVTDSVVLSFIETLEKNELLKVKIHRTCP 69
Query: 234 LNMKRTHDSLERKTGGLVVWRSGSKIILYR 263
++ LE TG + V + +I YR
Sbjct: 70 GELEDMILHLEEATGSVSVGQIARTVIFYR 99
>gi|225378064|ref|ZP_03755285.1| hypothetical protein ROSEINA2194_03724 [Roseburia inulinivorans DSM
16841]
gi|225210065|gb|EEG92419.1| hypothetical protein ROSEINA2194_03724 [Roseburia inulinivorans DSM
16841]
Length = 99
Score = 40.4 bits (93), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 38/75 (50%)
Query: 199 LKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRTHDSLERKTGGLVVWRSGSK 258
+IGKA +T ++NG+ E E++KI C + + + + +T +VV G K
Sbjct: 22 FQIGKASLTPELINGLDEALEKRELIKISVLKNCADDPREIAEIIAERTHSVVVKVIGKK 81
Query: 259 IILYRGADYKYPYFL 273
IIL+R A Y L
Sbjct: 82 IILFRQAKKNSKYEL 96
>gi|156935702|ref|YP_001439618.1| RNA-binding protein YhbY [Cronobacter sakazakii ATCC BAA-894]
gi|389842522|ref|YP_006344606.1| RNA-binding protein YhbY [Cronobacter sakazakii ES15]
gi|417789285|ref|ZP_12436938.1| RNA-binding protein YhbY [Cronobacter sakazakii E899]
gi|424802126|ref|ZP_18227668.1| FIG004454: RNA binding protein [Cronobacter sakazakii 696]
gi|429107236|ref|ZP_19169105.1| FIG004454: RNA binding protein [Cronobacter malonaticus 681]
gi|429112640|ref|ZP_19174410.1| FIG004454: RNA binding protein [Cronobacter malonaticus 507]
gi|429117945|ref|ZP_19178863.1| FIG004454: RNA binding protein [Cronobacter sakazakii 701]
gi|429118803|ref|ZP_19179550.1| FIG004454: RNA binding protein [Cronobacter sakazakii 680]
gi|449309817|ref|YP_007442173.1| RNA-binding protein YhbY [Cronobacter sakazakii SP291]
gi|156533956|gb|ABU78782.1| hypothetical protein ESA_03571 [Cronobacter sakazakii ATCC BAA-894]
gi|333956591|gb|EGL74241.1| RNA-binding protein YhbY [Cronobacter sakazakii E899]
gi|387852998|gb|AFK01096.1| RNA-binding protein YhbY [Cronobacter sakazakii ES15]
gi|423237847|emb|CCK09538.1| FIG004454: RNA binding protein [Cronobacter sakazakii 696]
gi|426293959|emb|CCJ95218.1| FIG004454: RNA binding protein [Cronobacter malonaticus 681]
gi|426313797|emb|CCK00523.1| FIG004454: RNA binding protein [Cronobacter malonaticus 507]
gi|426321074|emb|CCK04976.1| FIG004454: RNA binding protein [Cronobacter sakazakii 701]
gi|426326708|emb|CCK10287.1| FIG004454: RNA binding protein [Cronobacter sakazakii 680]
gi|449099850|gb|AGE87884.1| RNA-binding protein YhbY [Cronobacter sakazakii SP291]
Length = 97
Score = 40.4 bits (93), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 178 LKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEV--VKIVCEDLCRLN 235
+ LS K+ + L+ L L+ + +G G+TEG++ I + H E+ VKI ED R
Sbjct: 1 MNLSTKQKQHLKGLAHPLKPVVMLGNNGLTEGVLAEIEQALEHHELIKVKIATED--RET 58
Query: 236 MKRTHDSLERKTGGLVVWRSGSKIILYR 263
D++ R+TG V G ++LYR
Sbjct: 59 KTLIVDAIVRETGACNVQVIGKTLVLYR 86
>gi|82751197|ref|YP_416938.1| hypothetical protein SAB1467c [Staphylococcus aureus RF122]
gi|82656728|emb|CAI81156.1| conserved hypothetical protein [Staphylococcus aureus RF122]
Length = 96
Score = 40.4 bits (93), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 44/84 (52%)
Query: 180 LSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRT 239
L+GK+ R LR+L + +IGK GI E ++ I + + E++K+ + K
Sbjct: 2 LTGKQKRYLRSLAHNIDPIFQIGKGGINENMIKQIDDTLENRELIKVHVLQNNFDDKKEL 61
Query: 240 HDSLERKTGGLVVWRSGSKIILYR 263
++L + T +V GS I++YR
Sbjct: 62 AETLSKATRSELVQVIGSMIVIYR 85
>gi|308050592|ref|YP_003914158.1| hypothetical protein Fbal_2882 [Ferrimonas balearica DSM 9799]
gi|307632782|gb|ADN77084.1| protein of unknown function UPF0044 [Ferrimonas balearica DSM 9799]
Length = 100
Score = 40.4 bits (93), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 44/85 (51%)
Query: 179 KLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKR 238
+L+ K+ + L+ L LR + +G G+TEG++ I + H E++K+ R +
Sbjct: 3 QLTNKQKQYLKGLAHSLRPVVLLGANGLTEGVLAEIEQALDHHELIKVKAATEDREMKRA 62
Query: 239 THDSLERKTGGLVVWRSGSKIILYR 263
D++ R+TG V G +LYR
Sbjct: 63 IMDAIARETGATEVQVIGHIQVLYR 87
>gi|50085897|ref|YP_047407.1| hypothetical protein ACIAD2855 [Acinetobacter sp. ADP1]
gi|49531873|emb|CAG69585.1| putative RNA-binding protein [Acinetobacter sp. ADP1]
Length = 108
Score = 40.4 bits (93), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 45/93 (48%)
Query: 180 LSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRT 239
LS +E +RLR +G L + IG G+TEG++ + E++KI R +
Sbjct: 4 LSIQERKRLRQIGHALNPVVMIGGQGLTEGVIEEANRALTDHELIKIKIAGEDRETRAQV 63
Query: 240 HDSLERKTGGLVVWRSGSKIILYRGADYKYPYF 272
D L + TG V + G ++LY+ A + P
Sbjct: 64 IDELVQVTGAEAVQKIGKIVLLYKKAAKQNPNL 96
>gi|121998551|ref|YP_001003338.1| hypothetical protein Hhal_1772 [Halorhodospira halophila SL1]
gi|121589956|gb|ABM62536.1| protein of unknown function UPF0044 [Halorhodospira halophila SL1]
Length = 118
Score = 40.4 bits (93), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 44/86 (51%)
Query: 178 LKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMK 237
++L +L++LR LG L+ + G AG++EG++ I E++K+ + +
Sbjct: 23 MQLDPDQLKQLRRLGHALKPVVLTGAAGLSEGVLEEIERALDDHELIKVKLAGASKEERQ 82
Query: 238 RTHDSLERKTGGLVVWRSGSKIILYR 263
+ +TG +VV G ++LY+
Sbjct: 83 AMTTEIAEQTGAVVVQTIGRIVLLYQ 108
>gi|39546366|ref|NP_462209.2| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Typhimurium str. LT2]
gi|205354199|ref|YP_002228000.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Gallinarum str. 287/91]
gi|207858546|ref|YP_002245197.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. P125109]
gi|378452116|ref|YP_005239476.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Typhimurium str. 14028S]
gi|378701198|ref|YP_005183156.1| hypothetical protein SL1344_3270 [Salmonella enterica subsp.
enterica serovar Typhimurium str. SL1344]
gi|379702558|ref|YP_005244286.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Typhimurium str. ST4/74]
gi|416646716|ref|ZP_11807923.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. 507440-20]
gi|417336663|ref|ZP_12119063.1| RNA binding protein [Salmonella enterica subsp. enterica serovar
Alachua str. R6-377]
gi|418488884|ref|ZP_13056278.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035278]
gi|418494330|ref|ZP_13060784.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035318]
gi|418500495|ref|ZP_13066891.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035320]
gi|418505794|ref|ZP_13072140.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035321]
gi|418524392|ref|ZP_13090377.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008286]
gi|418818279|ref|ZP_13373758.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21538]
gi|418823347|ref|ZP_13378756.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Newport str. CVM 22425]
gi|419729807|ref|ZP_14256763.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41579]
gi|419732846|ref|ZP_14259750.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41563]
gi|419741335|ref|ZP_14268036.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41573]
gi|419742933|ref|ZP_14269602.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41566]
gi|419748993|ref|ZP_14275483.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41565]
gi|421360878|ref|ZP_15811154.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 622731-39]
gi|421361130|ref|ZP_15811396.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 639016-6]
gi|421369975|ref|ZP_15820150.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 640631]
gi|421374419|ref|ZP_15824550.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 77-0424]
gi|421378644|ref|ZP_15828723.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607307-6]
gi|421379668|ref|ZP_15829735.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 485549-17]
gi|421384667|ref|ZP_15834690.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 596866-22]
gi|421389691|ref|ZP_15839674.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 596866-70]
gi|421396977|ref|ZP_15846902.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 629164-26]
gi|421397835|ref|ZP_15847745.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 629164-37]
gi|421405756|ref|ZP_15855581.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 639672-46]
gi|421408718|ref|ZP_15858517.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 639672-50]
gi|421411319|ref|ZP_15861085.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 77-1427]
gi|421417746|ref|ZP_15867456.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 77-2659]
gi|421421210|ref|ZP_15870879.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 78-1757]
gi|421427441|ref|ZP_15877061.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 22510-1]
gi|421431212|ref|ZP_15880798.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 8b-1]
gi|421437270|ref|ZP_15886791.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648905 5-18]
gi|421441502|ref|ZP_15890971.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 6-18]
gi|421442843|ref|ZP_15892288.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 50-3079]
gi|421447656|ref|ZP_15897053.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 58-6482]
gi|421570380|ref|ZP_16016071.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00322]
gi|421574272|ref|ZP_16019897.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00325]
gi|421579347|ref|ZP_16024911.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00326]
gi|421582646|ref|ZP_16028179.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00328]
gi|422027519|ref|ZP_16373859.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm1]
gi|422032561|ref|ZP_16378668.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm2]
gi|427554327|ref|ZP_18929160.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm8]
gi|427576575|ref|ZP_18935106.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm9]
gi|427592729|ref|ZP_18938675.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm3]
gi|427623548|ref|ZP_18945048.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm4]
gi|427640424|ref|ZP_18948441.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm6]
gi|427657543|ref|ZP_18953189.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm10]
gi|427659343|ref|ZP_18954910.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm11]
gi|427677275|ref|ZP_18962967.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm12]
gi|427800593|ref|ZP_18968326.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm5]
gi|436619459|ref|ZP_20514538.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 22704]
gi|436649012|ref|ZP_20516681.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. SE30663]
gi|436801069|ref|ZP_20524686.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. CHS44]
gi|436807197|ref|ZP_20527240.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1882]
gi|436818088|ref|ZP_20534721.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1884]
gi|436832311|ref|ZP_20536601.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1594]
gi|436848129|ref|ZP_20539946.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1566]
gi|436860870|ref|ZP_20548054.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1580]
gi|436867902|ref|ZP_20553056.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1543]
gi|436869598|ref|ZP_20553739.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1441]
gi|436877258|ref|ZP_20558383.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1810]
gi|436891872|ref|ZP_20566572.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1558]
gi|436899222|ref|ZP_20570633.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1018]
gi|436902733|ref|ZP_20573197.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1010]
gi|436915184|ref|ZP_20580031.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1729]
gi|436919883|ref|ZP_20582664.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0895]
gi|436925857|ref|ZP_20586210.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0899]
gi|436932015|ref|ZP_20589364.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1457]
gi|436946227|ref|ZP_20598055.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1747]
gi|436955690|ref|ZP_20602565.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0968]
gi|436966422|ref|ZP_20607091.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1444]
gi|436970357|ref|ZP_20608887.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1445]
gi|436979829|ref|ZP_20612974.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1559]
gi|436993762|ref|ZP_20618555.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1565]
gi|437009370|ref|ZP_20623747.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1808]
gi|437022511|ref|ZP_20628460.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1811]
gi|437028620|ref|ZP_20630712.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0956]
gi|437042733|ref|ZP_20636246.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1455]
gi|437050408|ref|ZP_20640553.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1575]
gi|437061640|ref|ZP_20647006.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1725]
gi|437066556|ref|ZP_20649618.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1745]
gi|437072670|ref|ZP_20652587.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1791]
gi|437083303|ref|ZP_20659046.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1795]
gi|437098045|ref|ZP_20665500.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 576709]
gi|437102370|ref|ZP_20666504.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 635290-58]
gi|437118084|ref|ZP_20670147.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607308-16]
gi|437129788|ref|ZP_20676264.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607308-19]
gi|437141501|ref|ZP_20683185.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607307-2]
gi|437146417|ref|ZP_20686206.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607308-9]
gi|437153603|ref|ZP_20690709.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 629163]
gi|437158240|ref|ZP_20693162.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. SE15-1]
gi|437169056|ref|ZP_20699449.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_N202]
gi|437178558|ref|ZP_20704728.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_56-3991]
gi|437181439|ref|ZP_20706553.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_76-3618]
gi|437250481|ref|ZP_20715230.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 13183-1]
gi|437260144|ref|ZP_20717544.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_81-2490]
gi|437272283|ref|ZP_20724169.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. SL909]
gi|437281466|ref|ZP_20728600.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. SL913]
gi|437296748|ref|ZP_20732549.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_69-4941]
gi|437316124|ref|ZP_20737812.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 638970-15]
gi|437326498|ref|ZP_20740260.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 17927]
gi|437342025|ref|ZP_20745148.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. CHS4]
gi|437365386|ref|ZP_20748724.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 22558]
gi|437417783|ref|ZP_20754202.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 543463 22-17]
gi|437453438|ref|ZP_20759792.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 543463 40-18]
gi|437463629|ref|ZP_20763311.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 561362 1-1]
gi|437480808|ref|ZP_20768513.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 642044 4-1]
gi|437495468|ref|ZP_20772744.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 642046 4-7]
gi|437504804|ref|ZP_20775286.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648898 4-5]
gi|437538192|ref|ZP_20781891.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648899 3-17]
gi|437567352|ref|ZP_20787623.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648900 1-16]
gi|437580748|ref|ZP_20792151.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 1-17]
gi|437588091|ref|ZP_20793731.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 39-2]
gi|437604828|ref|ZP_20799007.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648902 6-8]
gi|437619604|ref|ZP_20803756.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648903 1-6]
gi|437633827|ref|ZP_20806797.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648904 3-6]
gi|437665633|ref|ZP_20814784.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 653049 13-19]
gi|437675640|ref|ZP_20816793.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 642044 8-1]
gi|437700188|ref|ZP_20823775.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 561362 9-7]
gi|437715676|ref|ZP_20828023.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 543463 42-20]
gi|437732957|ref|ZP_20831960.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 16-16]
gi|437748544|ref|ZP_20833716.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 76-2651]
gi|437804352|ref|ZP_20838906.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 33944]
gi|437823865|ref|ZP_20843666.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. SARB17]
gi|437862454|ref|ZP_20847952.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 6.0562-1]
gi|438084944|ref|ZP_20858515.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 81-2625]
gi|438100195|ref|ZP_20863836.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 62-1976]
gi|438114797|ref|ZP_20870303.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 53-407]
gi|438129352|ref|ZP_20873345.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Pullorum str. ATCC 9120]
gi|440763658|ref|ZP_20942695.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Agona str. SH11G1113]
gi|440770564|ref|ZP_20949513.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Agona str. SH08SF124]
gi|440775091|ref|ZP_20953976.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Agona str. SH10GFN094]
gi|445128651|ref|ZP_21380361.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Gallinarum str. 9184]
gi|445141150|ref|ZP_21385263.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Dublin str. SL1438]
gi|445149553|ref|ZP_21389239.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Dublin str. HWS51]
gi|445171352|ref|ZP_21396102.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. SE8a]
gi|445179548|ref|ZP_21397985.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 20037]
gi|445226198|ref|ZP_21403793.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. SE10]
gi|445247780|ref|ZP_21408498.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 436]
gi|445329570|ref|ZP_21413523.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 18569]
gi|445344948|ref|ZP_21417913.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 13-1]
gi|445356919|ref|ZP_21421937.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. PT23]
gi|205273980|emb|CAR38986.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Gallinarum str. 287/91]
gi|206710349|emb|CAR34707.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Enteritidis str. P125109]
gi|267995495|gb|ACY90380.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Typhimurium str. 14028S]
gi|301159847|emb|CBW19366.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Typhimurium str. SL1344]
gi|323131657|gb|ADX19087.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Typhimurium str. ST4/74]
gi|353567142|gb|EHC32422.1| RNA binding protein [Salmonella enterica subsp. enterica serovar
Alachua str. R6-377]
gi|366062148|gb|EHN26385.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035318]
gi|366068101|gb|EHN32249.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035321]
gi|366068950|gb|EHN33082.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035320]
gi|366069265|gb|EHN33390.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035278]
gi|366830873|gb|EHN57740.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. 507440-20]
gi|372207251|gb|EHP20750.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008286]
gi|381292013|gb|EIC33223.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41573]
gi|381296109|gb|EIC37217.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41579]
gi|381302198|gb|EIC43244.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41563]
gi|381312742|gb|EIC53536.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41566]
gi|381312989|gb|EIC53782.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41565]
gi|392786241|gb|EJA42798.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Newport str. CVM 22425]
gi|392786691|gb|EJA43247.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21538]
gi|395981445|gb|EJH90667.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 622731-39]
gi|395982098|gb|EJH91319.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 640631]
gi|395993857|gb|EJI02947.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 639016-6]
gi|395994543|gb|EJI03619.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 77-0424]
gi|395994979|gb|EJI04044.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607307-6]
gi|396005843|gb|EJI14815.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 485549-17]
gi|396009431|gb|EJI18364.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 629164-26]
gi|396017250|gb|EJI26116.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 596866-70]
gi|396018299|gb|EJI27161.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 596866-22]
gi|396021984|gb|EJI30798.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 639672-46]
gi|396028133|gb|EJI36895.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 639672-50]
gi|396032645|gb|EJI41364.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 629164-37]
gi|396042581|gb|EJI51203.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 77-2659]
gi|396042852|gb|EJI51472.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 78-1757]
gi|396046345|gb|EJI54933.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 77-1427]
gi|396050418|gb|EJI58943.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648905 5-18]
gi|396051796|gb|EJI60311.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 22510-1]
gi|396055038|gb|EJI63530.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 8b-1]
gi|396063659|gb|EJI72048.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 6-18]
gi|396071900|gb|EJI80216.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 50-3079]
gi|396074550|gb|EJI82838.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 58-6482]
gi|402521881|gb|EJW29213.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00326]
gi|402524375|gb|EJW31674.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00322]
gi|402525773|gb|EJW33059.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00325]
gi|402532826|gb|EJW40014.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00328]
gi|414014431|gb|EKS98274.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm1]
gi|414015621|gb|EKS99428.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm8]
gi|414015832|gb|EKS99623.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm2]
gi|414025858|gb|EKT09146.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm9]
gi|414027821|gb|EKT11032.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm4]
gi|414030321|gb|EKT13426.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm3]
gi|414043824|gb|EKT26298.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm6]
gi|414044285|gb|EKT26740.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm10]
gi|414056828|gb|EKT38612.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm12]
gi|414058602|gb|EKT40261.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm11]
gi|414063242|gb|EKT44410.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm5]
gi|434941874|gb|ELL48252.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Pullorum str. ATCC 9120]
gi|434958448|gb|ELL52000.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. CHS44]
gi|434965385|gb|ELL58342.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 22704]
gi|434968153|gb|ELL60905.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1882]
gi|434970632|gb|ELL63193.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1884]
gi|434980910|gb|ELL72797.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1594]
gi|434985314|gb|ELL77001.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1580]
gi|434991005|gb|ELL82533.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1566]
gi|434993054|gb|ELL84493.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1543]
gi|435002738|gb|ELL93789.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1441]
gi|435006001|gb|ELL96921.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1558]
gi|435008759|gb|ELL99570.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1810]
gi|435012357|gb|ELM03032.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1018]
gi|435019163|gb|ELM09607.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1010]
gi|435023266|gb|ELM13562.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1729]
gi|435029107|gb|ELM19166.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. SE30663]
gi|435029718|gb|ELM19776.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0895]
gi|435035799|gb|ELM25644.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1747]
gi|435038119|gb|ELM27901.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0899]
gi|435044528|gb|ELM34211.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1457]
gi|435046066|gb|ELM35692.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0968]
gi|435046832|gb|ELM36447.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1444]
gi|435058160|gb|ELM47515.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1445]
gi|435065439|gb|ELM54545.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1565]
gi|435067194|gb|ELM56255.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1808]
gi|435068385|gb|ELM57413.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1559]
gi|435076448|gb|ELM65231.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1811]
gi|435083383|gb|ELM71984.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1455]
gi|435084656|gb|ELM73241.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0956]
gi|435088124|gb|ELM76581.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1725]
gi|435093112|gb|ELM81452.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1575]
gi|435097362|gb|ELM85621.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1745]
gi|435106689|gb|ELM94706.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 576709]
gi|435108876|gb|ELM96841.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1795]
gi|435110200|gb|ELM98133.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1791]
gi|435122995|gb|ELN10499.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 635290-58]
gi|435127008|gb|ELN14402.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607308-19]
gi|435127669|gb|ELN15029.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607307-2]
gi|435133661|gb|ELN20819.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607308-16]
gi|435136662|gb|ELN23752.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607308-9]
gi|435141354|gb|ELN28296.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 629163]
gi|435148784|gb|ELN35498.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_N202]
gi|435152025|gb|ELN38656.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. SE15-1]
gi|435152883|gb|ELN39505.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_56-3991]
gi|435164181|gb|ELN50280.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 13183-1]
gi|435164795|gb|ELN50867.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_81-2490]
gi|435166399|gb|ELN52382.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_76-3618]
gi|435168994|gb|ELN54804.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. SL909]
gi|435169229|gb|ELN55028.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. SL913]
gi|435179175|gb|ELN64325.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_69-4941]
gi|435180600|gb|ELN65708.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 638970-15]
gi|435192425|gb|ELN76956.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 17927]
gi|435193691|gb|ELN78170.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. CHS4]
gi|435202418|gb|ELN86272.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 543463 22-17]
gi|435208078|gb|ELN91502.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 543463 40-18]
gi|435208344|gb|ELN91759.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 22558]
gi|435217984|gb|ELO00391.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 642044 4-1]
gi|435218906|gb|ELO01307.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 561362 1-1]
gi|435226815|gb|ELO08368.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 642046 4-7]
gi|435235092|gb|ELO15945.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648900 1-16]
gi|435235890|gb|ELO16672.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648898 4-5]
gi|435239038|gb|ELO19646.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648899 3-17]
gi|435240999|gb|ELO21389.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 1-17]
gi|435256771|gb|ELO36065.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648902 6-8]
gi|435258236|gb|ELO37503.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 39-2]
gi|435258884|gb|ELO38144.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648903 1-6]
gi|435265220|gb|ELO44105.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 653049 13-19]
gi|435274249|gb|ELO52373.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 561362 9-7]
gi|435277453|gb|ELO55402.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 642044 8-1]
gi|435281881|gb|ELO59528.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648904 3-6]
gi|435284979|gb|ELO62396.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 543463 42-20]
gi|435287354|gb|ELO64557.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 16-16]
gi|435302950|gb|ELO78877.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 33944]
gi|435306204|gb|ELO81559.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. SARB17]
gi|435311983|gb|ELO85998.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 76-2651]
gi|435319349|gb|ELO92188.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 81-2625]
gi|435325155|gb|ELO97029.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 62-1976]
gi|435328621|gb|ELP00087.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 53-407]
gi|435336311|gb|ELP06277.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 6.0562-1]
gi|436411262|gb|ELP09215.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Agona str. SH08SF124]
gi|436411705|gb|ELP09653.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Agona str. SH10GFN094]
gi|436419290|gb|ELP17168.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Agona str. SH11G1113]
gi|444851359|gb|ELX76450.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Dublin str. SL1438]
gi|444854699|gb|ELX79758.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Gallinarum str. 9184]
gi|444857795|gb|ELX82793.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Dublin str. HWS51]
gi|444861407|gb|ELX86286.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. SE8a]
gi|444867860|gb|ELX92534.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. SE10]
gi|444872501|gb|ELX96839.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 20037]
gi|444878920|gb|ELY03032.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 18569]
gi|444879614|gb|ELY03709.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 13-1]
gi|444886877|gb|ELY10618.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. PT23]
gi|444890088|gb|ELY13455.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 436]
Length = 97
Score = 40.4 bits (93), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 44/86 (51%)
Query: 178 LKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMK 237
+ LS K+ + L+ L L+ + +G G+TEG++ I + H E++K+ R
Sbjct: 1 MNLSTKQKQHLKGLAHPLKPVVMLGNNGLTEGVLAEIEQALEHHELIKVKIASEDRETKT 60
Query: 238 RTHDSLERKTGGLVVWRSGSKIILYR 263
D++ R+TG V G ++LYR
Sbjct: 61 LIVDAIVRETGACNVQVIGKTLVLYR 86
>gi|57651987|ref|YP_186491.1| hypothetical protein SACOL1651 [Staphylococcus aureus subsp. aureus
COL]
gi|87161797|ref|YP_494249.1| hypothetical protein SAUSA300_1554 [Staphylococcus aureus subsp.
aureus USA300_FPR3757]
gi|88195404|ref|YP_500208.1| hypothetical protein SAOUHSC_01698 [Staphylococcus aureus subsp.
aureus NCTC 8325]
gi|151221709|ref|YP_001332531.1| hypothetical protein NWMN_1497 [Staphylococcus aureus subsp. aureus
str. Newman]
gi|161509823|ref|YP_001575482.1| hypothetical protein USA300HOU_1596 [Staphylococcus aureus subsp.
aureus USA300_TCH1516]
gi|221141134|ref|ZP_03565627.1| hypothetical protein SauraJ_05778 [Staphylococcus aureus subsp.
aureus str. JKD6009]
gi|253732248|ref|ZP_04866413.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
USA300_TCH959]
gi|253733154|ref|ZP_04867319.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
TCH130]
gi|258450577|ref|ZP_05698639.1| conserved hypothetical protein [Staphylococcus aureus A5948]
gi|262048594|ref|ZP_06021477.1| hypothetical protein SAD30_0990 [Staphylococcus aureus D30]
gi|262051253|ref|ZP_06023477.1| hypothetical protein SA930_1684 [Staphylococcus aureus 930918-3]
gi|282920143|ref|ZP_06327868.1| conserved hypothetical protein [Staphylococcus aureus A9765]
gi|284024653|ref|ZP_06379051.1| hypothetical protein Saura13_08680 [Staphylococcus aureus subsp.
aureus 132]
gi|294848625|ref|ZP_06789371.1| hypothetical protein SKAG_00692 [Staphylococcus aureus A9754]
gi|379014803|ref|YP_005291039.1| hypothetical protein SAVC_07230 [Staphylococcus aureus subsp.
aureus VC40]
gi|384862195|ref|YP_005744915.1| RNA-binding protein YbhY [Staphylococcus aureus subsp. aureus str.
JKD6008]
gi|384870135|ref|YP_005752849.1| RNA-binding protein YbhY [Staphylococcus aureus subsp. aureus
T0131]
gi|387143200|ref|YP_005731593.1| hypothetical protein SATW20_15910 [Staphylococcus aureus subsp.
aureus TW20]
gi|415686215|ref|ZP_11450352.1| hypothetical protein CGSSa01_09309 [Staphylococcus aureus subsp.
aureus CGS01]
gi|417649266|ref|ZP_12299070.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus 21189]
gi|417897927|ref|ZP_12541853.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus 21259]
gi|418276919|ref|ZP_12891673.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus 21178]
gi|418285638|ref|ZP_12898306.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus 21209]
gi|418318445|ref|ZP_12929847.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus 21232]
gi|418321344|ref|ZP_12932690.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus VCU006]
gi|418571880|ref|ZP_13136100.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus 21283]
gi|418579519|ref|ZP_13143614.1| hypothetical protein SACIG1114_2155 [Staphylococcus aureus subsp.
aureus CIG1114]
gi|418599960|ref|ZP_13163434.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus 21343]
gi|418641926|ref|ZP_13204131.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus IS-24]
gi|418645135|ref|ZP_13207263.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus IS-55]
gi|418648372|ref|ZP_13210416.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus IS-88]
gi|418650514|ref|ZP_13212532.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus IS-91]
gi|418659232|ref|ZP_13220920.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus IS-111]
gi|418873202|ref|ZP_13427512.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus IS-125]
gi|418875534|ref|ZP_13429790.1| hypothetical protein SACIGC93_1665 [Staphylococcus aureus subsp.
aureus CIGC93]
gi|418903901|ref|ZP_13457942.1| hypothetical protein SACIG1770_2196 [Staphylococcus aureus subsp.
aureus CIG1770]
gi|418906539|ref|ZP_13460565.1| hypothetical protein SACIGC345D_2016 [Staphylococcus aureus subsp.
aureus CIGC345D]
gi|418912205|ref|ZP_13466186.1| hypothetical protein SACIG547_2225 [Staphylococcus aureus subsp.
aureus CIG547]
gi|418925854|ref|ZP_13479756.1| hypothetical protein SACIG2018_1992 [Staphylococcus aureus subsp.
aureus CIG2018]
gi|418928944|ref|ZP_13482830.1| hypothetical protein SACIG1612_2238 [Staphylococcus aureus subsp.
aureus CIG1612]
gi|418946867|ref|ZP_13499269.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus IS-157]
gi|418955669|ref|ZP_13507606.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus IS-189]
gi|419773236|ref|ZP_14299247.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus CO-23]
gi|421148525|ref|ZP_15608185.1| hypothetical protein Newbould305_0284 [Staphylococcus aureus subsp.
aureus str. Newbould 305]
gi|422742621|ref|ZP_16796624.1| conserved hypothetical protein TIGR00253 [Staphylococcus aureus
subsp. aureus MRSA177]
gi|422746111|ref|ZP_16800044.1| conserved hypothetical protein TIGR00253 [Staphylococcus aureus
subsp. aureus MRSA131]
gi|424785430|ref|ZP_18212233.1| RNA binding protein [Staphylococcus aureus CN79]
gi|440707235|ref|ZP_20887934.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus 21282]
gi|440735045|ref|ZP_20914656.1| hypothetical protein SASA_10540 [Staphylococcus aureus subsp.
aureus DSM 20231]
gi|443640009|ref|ZP_21124009.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus 21196]
gi|57286173|gb|AAW38267.1| conserved hypothetical protein TIGR00253 [Staphylococcus aureus
subsp. aureus COL]
gi|87127771|gb|ABD22285.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
USA300_FPR3757]
gi|87202962|gb|ABD30772.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
NCTC 8325]
gi|150374509|dbj|BAF67769.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
str. Newman]
gi|160368632|gb|ABX29603.1| hypothetical protein USA300HOU_1596 [Staphylococcus aureus subsp.
aureus USA300_TCH1516]
gi|253724037|gb|EES92766.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
USA300_TCH959]
gi|253728910|gb|EES97639.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
TCH130]
gi|257861735|gb|EEV84534.1| conserved hypothetical protein [Staphylococcus aureus A5948]
gi|259160890|gb|EEW45910.1| hypothetical protein SA930_1684 [Staphylococcus aureus 930918-3]
gi|259163241|gb|EEW47800.1| hypothetical protein SAD30_0990 [Staphylococcus aureus D30]
gi|269941083|emb|CBI49468.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
TW20]
gi|282594491|gb|EFB99476.1| conserved hypothetical protein [Staphylococcus aureus A9765]
gi|294824651|gb|EFG41074.1| hypothetical protein SKAG_00692 [Staphylococcus aureus A9754]
gi|302751424|gb|ADL65601.1| RNA-binding protein YbhY [Staphylococcus aureus subsp. aureus str.
JKD6008]
gi|315198708|gb|EFU29036.1| hypothetical protein CGSSa01_09309 [Staphylococcus aureus subsp.
aureus CGS01]
gi|320140519|gb|EFW32373.1| conserved hypothetical protein TIGR00253 [Staphylococcus aureus
subsp. aureus MRSA131]
gi|320144057|gb|EFW35826.1| conserved hypothetical protein TIGR00253 [Staphylococcus aureus
subsp. aureus MRSA177]
gi|329314270|gb|AEB88683.1| RNA-binding protein YbhY [Staphylococcus aureus subsp. aureus
T0131]
gi|329728372|gb|EGG64809.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus 21189]
gi|341849429|gb|EGS90572.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus 21259]
gi|365169448|gb|EHM60696.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus 21209]
gi|365173902|gb|EHM64331.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus 21178]
gi|365225576|gb|EHM66819.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus VCU006]
gi|365242908|gb|EHM83603.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus 21232]
gi|371978372|gb|EHO95621.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus 21283]
gi|374363500|gb|AEZ37605.1| hypothetical protein SAVC_07230 [Staphylococcus aureus subsp.
aureus VC40]
gi|374395549|gb|EHQ66812.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus 21343]
gi|375018381|gb|EHS11961.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus IS-24]
gi|375023968|gb|EHS17413.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus IS-55]
gi|375026285|gb|EHS19668.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus IS-88]
gi|375027800|gb|EHS21158.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus IS-91]
gi|375036230|gb|EHS29308.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus IS-111]
gi|375366393|gb|EHS70390.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus IS-125]
gi|375370755|gb|EHS74553.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus IS-189]
gi|375377269|gb|EHS80752.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus IS-157]
gi|377697546|gb|EHT21901.1| hypothetical protein SACIG1114_2155 [Staphylococcus aureus subsp.
aureus CIG1114]
gi|377722462|gb|EHT46588.1| hypothetical protein SACIG547_2225 [Staphylococcus aureus subsp.
aureus CIG547]
gi|377738856|gb|EHT62865.1| hypothetical protein SACIG1612_2238 [Staphylococcus aureus subsp.
aureus CIG1612]
gi|377742916|gb|EHT66901.1| hypothetical protein SACIG1770_2196 [Staphylococcus aureus subsp.
aureus CIG1770]
gi|377744923|gb|EHT68900.1| hypothetical protein SACIG2018_1992 [Staphylococcus aureus subsp.
aureus CIG2018]
gi|377763444|gb|EHT87300.1| hypothetical protein SACIGC345D_2016 [Staphylococcus aureus subsp.
aureus CIGC345D]
gi|377769606|gb|EHT93374.1| hypothetical protein SACIGC93_1665 [Staphylococcus aureus subsp.
aureus CIGC93]
gi|383973060|gb|EID89081.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus CO-23]
gi|394331668|gb|EJE57751.1| hypothetical protein Newbould305_0284 [Staphylococcus aureus subsp.
aureus str. Newbould 305]
gi|421956840|gb|EKU09169.1| RNA binding protein [Staphylococcus aureus CN79]
gi|436431140|gb|ELP28494.1| hypothetical protein SASA_10540 [Staphylococcus aureus subsp.
aureus DSM 20231]
gi|436505991|gb|ELP41830.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus 21282]
gi|443406284|gb|ELS64868.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus 21196]
Length = 96
Score = 40.4 bits (93), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 43/84 (51%)
Query: 180 LSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRT 239
L+GK+ R LR+L + +IGK GI E ++ I + + E++K+ + K
Sbjct: 2 LTGKQKRYLRSLAHNIDPIFQIGKGGINENMIKQIDDTLENRELIKVHVLQNNFDDKKEL 61
Query: 240 HDSLERKTGGLVVWRSGSKIILYR 263
++L T +V GS I++YR
Sbjct: 62 AETLSEATHSELVQVIGSMIVIYR 85
>gi|406956215|gb|EKD84395.1| hypothetical protein ACD_39C00075G0001 [uncultured bacterium]
Length = 101
Score = 40.0 bits (92), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 46/93 (49%)
Query: 178 LKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMK 237
+KLS + + L L L ++IGK G+ I+ + E + E++KI D ++ +
Sbjct: 1 MKLSSNQRKHLEGLAHHLEPIVRIGKQGLASKIILSVVEAFNTNELIKIKLLDSAPVDAE 60
Query: 238 RTHDSLERKTGGLVVWRSGSKIILYRGADYKYP 270
+ +K+G L+V G I+LYR K P
Sbjct: 61 EAAIEICKKSGALLVRIIGRVIVLYRPFSEKPP 93
>gi|49483842|ref|YP_041066.1| hypothetical protein SAR1672 [Staphylococcus aureus subsp. aureus
MRSA252]
gi|257425719|ref|ZP_05602143.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
55/2053]
gi|257428380|ref|ZP_05604778.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
65-1322]
gi|257431017|ref|ZP_05607397.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
68-397]
gi|257433705|ref|ZP_05610063.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
E1410]
gi|257436619|ref|ZP_05612663.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
M876]
gi|282904176|ref|ZP_06312064.1| probable RNA-binding protein YqeI [Staphylococcus aureus subsp.
aureus C160]
gi|282906003|ref|ZP_06313858.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
Btn1260]
gi|282908914|ref|ZP_06316732.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
WW2703/97]
gi|282911232|ref|ZP_06319034.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
WBG10049]
gi|282914401|ref|ZP_06322187.1| probable RNA-binding protein YqeI [Staphylococcus aureus subsp.
aureus M899]
gi|282919370|ref|ZP_06327105.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
C427]
gi|282924695|ref|ZP_06332363.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
C101]
gi|283958358|ref|ZP_06375809.1| probable RNA-binding protein YqeI [Staphylococcus aureus subsp.
aureus A017934/97]
gi|293503475|ref|ZP_06667322.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
58-424]
gi|293510492|ref|ZP_06669198.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
M809]
gi|293531032|ref|ZP_06671714.1| probable RNA-binding protein YqeI [Staphylococcus aureus subsp.
aureus M1015]
gi|295428172|ref|ZP_06820804.1| hypothetical protein SIAG_00700 [Staphylococcus aureus subsp.
aureus EMRSA16]
gi|297590862|ref|ZP_06949500.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
MN8]
gi|415682397|ref|ZP_11447713.1| hypothetical protein CGSSa00_07500 [Staphylococcus aureus subsp.
aureus CGS00]
gi|417887983|ref|ZP_12532102.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus 21195]
gi|418564602|ref|ZP_13129023.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus 21264]
gi|418582521|ref|ZP_13146599.1| hypothetical protein SACIG1605_2417 [Staphylococcus aureus subsp.
aureus CIG1605]
gi|418597225|ref|ZP_13160758.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus 21342]
gi|418601006|ref|ZP_13164454.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus 21345]
gi|418892324|ref|ZP_13446437.1| hypothetical protein SACIG1176_2403 [Staphylococcus aureus subsp.
aureus CIG1176]
gi|418898229|ref|ZP_13452299.1| hypothetical protein SACIGC341D_2430 [Staphylococcus aureus subsp.
aureus CIGC341D]
gi|418901099|ref|ZP_13455155.1| hypothetical protein SACIG1214_2348 [Staphylococcus aureus subsp.
aureus CIG1214]
gi|418909446|ref|ZP_13463442.1| hypothetical protein SACIG149_2317 [Staphylococcus aureus subsp.
aureus CIG149]
gi|418917492|ref|ZP_13471451.1| hypothetical protein SACIG1267_2209 [Staphylococcus aureus subsp.
aureus CIG1267]
gi|418923276|ref|ZP_13477192.1| hypothetical protein SACIG1233_2260 [Staphylococcus aureus subsp.
aureus CIG1233]
gi|418982600|ref|ZP_13530308.1| hypothetical protein SACIG1242_1648 [Staphylococcus aureus subsp.
aureus CIG1242]
gi|418986266|ref|ZP_13533951.1| hypothetical protein SACIG1500_2338 [Staphylococcus aureus subsp.
aureus CIG1500]
gi|49241971|emb|CAG40666.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
MRSA252]
gi|257271413|gb|EEV03559.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
55/2053]
gi|257275221|gb|EEV06708.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
65-1322]
gi|257278447|gb|EEV09083.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
68-397]
gi|257281798|gb|EEV11935.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
E1410]
gi|257283970|gb|EEV14093.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
M876]
gi|282313530|gb|EFB43925.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
C101]
gi|282317180|gb|EFB47554.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
C427]
gi|282321582|gb|EFB51907.1| probable RNA-binding protein YqeI [Staphylococcus aureus subsp.
aureus M899]
gi|282324927|gb|EFB55237.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
WBG10049]
gi|282327178|gb|EFB57473.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
WW2703/97]
gi|282331295|gb|EFB60809.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
Btn1260]
gi|282595794|gb|EFC00758.1| probable RNA-binding protein YqeI [Staphylococcus aureus subsp.
aureus C160]
gi|283790507|gb|EFC29324.1| probable RNA-binding protein YqeI [Staphylococcus aureus subsp.
aureus A017934/97]
gi|290920300|gb|EFD97366.1| probable RNA-binding protein YqeI [Staphylococcus aureus subsp.
aureus M1015]
gi|291095141|gb|EFE25406.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
58-424]
gi|291466856|gb|EFF09376.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
M809]
gi|295128530|gb|EFG58164.1| hypothetical protein SIAG_00700 [Staphylococcus aureus subsp.
aureus EMRSA16]
gi|297575748|gb|EFH94464.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
MN8]
gi|315195497|gb|EFU25884.1| hypothetical protein CGSSa00_07500 [Staphylococcus aureus subsp.
aureus CGS00]
gi|341857012|gb|EGS97839.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus 21195]
gi|371975739|gb|EHO93031.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus 21264]
gi|374395461|gb|EHQ66728.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus 21342]
gi|374400253|gb|EHQ71372.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus 21345]
gi|377702496|gb|EHT26818.1| hypothetical protein SACIG1214_2348 [Staphylococcus aureus subsp.
aureus CIG1214]
gi|377704310|gb|EHT28620.1| hypothetical protein SACIG1500_2338 [Staphylococcus aureus subsp.
aureus CIG1500]
gi|377704881|gb|EHT29190.1| hypothetical protein SACIG1242_1648 [Staphylococcus aureus subsp.
aureus CIG1242]
gi|377710931|gb|EHT35169.1| hypothetical protein SACIG1605_2417 [Staphylococcus aureus subsp.
aureus CIG1605]
gi|377730618|gb|EHT54685.1| hypothetical protein SACIG1176_2403 [Staphylococcus aureus subsp.
aureus CIG1176]
gi|377735235|gb|EHT59271.1| hypothetical protein SACIG1233_2260 [Staphylococcus aureus subsp.
aureus CIG1233]
gi|377750666|gb|EHT74604.1| hypothetical protein SACIG1267_2209 [Staphylococcus aureus subsp.
aureus CIG1267]
gi|377752093|gb|EHT76017.1| hypothetical protein SACIG149_2317 [Staphylococcus aureus subsp.
aureus CIG149]
gi|377761264|gb|EHT85140.1| hypothetical protein SACIGC341D_2430 [Staphylococcus aureus subsp.
aureus CIGC341D]
Length = 96
Score = 40.0 bits (92), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 43/84 (51%)
Query: 180 LSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRT 239
L+GK+ R LR+L + +IGK GI E ++ I + + E++K+ + K
Sbjct: 2 LTGKQKRYLRSLAHNIDPIFQIGKGGINENMIKQIDDTLENRELIKVHVLQNNFDDKKEL 61
Query: 240 HDSLERKTGGLVVWRSGSKIILYR 263
++L T +V GS I++YR
Sbjct: 62 AETLSEATHSELVQVIGSMIVIYR 85
>gi|386729296|ref|YP_006195679.1| RNA binding protein (CRS1/YhbY family) [Staphylococcus aureus
subsp. aureus 71193]
gi|384230589|gb|AFH69836.1| RNA binding protein (CRS1/YhbY family) [Staphylococcus aureus
subsp. aureus 71193]
Length = 96
Score = 40.0 bits (92), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 43/84 (51%)
Query: 180 LSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRT 239
L+GK+ R LR+L + +IGK GI E ++ I + + E++KI + K
Sbjct: 2 LTGKQKRYLRSLAHNIDPIFQIGKGGINENMIKQIDDTLENRELIKIHVLQNNFDDKKEL 61
Query: 240 HDSLERKTGGLVVWRSGSKIILYR 263
++L T +V GS I++YR
Sbjct: 62 AETLSEATRSELVQVIGSMIVIYR 85
>gi|429083710|ref|ZP_19146739.1| FIG004454: RNA binding protein [Cronobacter condimenti 1330]
gi|426547329|emb|CCJ72780.1| FIG004454: RNA binding protein [Cronobacter condimenti 1330]
Length = 97
Score = 40.0 bits (92), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 44/86 (51%)
Query: 178 LKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMK 237
+ LS K+ + L+ L L+ + +G G+TEG++ I + H E++K+ R
Sbjct: 1 MNLSTKQKQHLKGLAHPLKPVVMLGSNGLTEGVLAEIEQALEHHELIKVKIASEDRETKT 60
Query: 238 RTHDSLERKTGGLVVWRSGSKIILYR 263
D++ R+TG V G ++LYR
Sbjct: 61 LIVDAIVRETGACNVQVIGKTLVLYR 86
>gi|253574705|ref|ZP_04852045.1| conserved hypothetical protein [Paenibacillus sp. oral taxon 786
str. D14]
gi|251845751|gb|EES73759.1| conserved hypothetical protein [Paenibacillus sp. oral taxon 786
str. D14]
Length = 96
Score = 40.0 bits (92), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 43/84 (51%)
Query: 180 LSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRT 239
L+GK+ R LR+L GL+ ++GK G E ++ I E E++KI + + +
Sbjct: 2 LTGKQKRYLRSLAHGLQPIFQVGKGGTNEHMIKQISEALERRELIKISVLNNNLDDPQEI 61
Query: 240 HDSLERKTGGLVVWRSGSKIILYR 263
+ L + G +V G IILY+
Sbjct: 62 AEELAQGAGAELVQLIGRTIILYK 85
>gi|452122885|ref|YP_007473133.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Javiana str. CFSAN001992]
gi|451911889|gb|AGF83695.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Javiana str. CFSAN001992]
Length = 97
Score = 40.0 bits (92), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 178 LKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEV--VKIVCEDLCRLN 235
+ LS K+ + L+ L L+ + +G G+TEG++ I + H E+ VKI ED R
Sbjct: 1 MNLSTKQKQHLKGLAHPLKPVVMLGNNGLTEGVLAEIEQALEHHELIKVKIASED--RET 58
Query: 236 MKRTHDSLERKTGGLVVWRSGSKIILYR 263
D++ R+TG V G ++LYR
Sbjct: 59 KTLIVDAIVRETGACNVQVIGKTLVLYR 86
>gi|375336636|ref|ZP_09777980.1| hypothetical protein SbacW_06573 [Succinivibrionaceae bacterium
WG-1]
Length = 99
Score = 40.0 bits (92), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 46/99 (46%)
Query: 178 LKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMK 237
++L+ K+L L+ L+ + IGK GITE ++N I H E++K+ R +
Sbjct: 1 MELTTKQLNYLKLKAQELKPVVMIGKNGITENVINEIKSSIEHHELIKVKAHVEDRTQKE 60
Query: 238 RTHDSLERKTGGLVVWRSGSKIILYRGADYKYPYFLADE 276
+ L + VV G+ I L++ A + L E
Sbjct: 61 ELANYLANASESTVVQYLGNNITLFKKAKKNSKFSLPKE 99
>gi|304413875|ref|ZP_07395292.1| putative RNA-binding protein [Candidatus Regiella insecticola LSR1]
gi|304283595|gb|EFL91990.1| putative RNA-binding protein [Candidatus Regiella insecticola LSR1]
Length = 97
Score = 40.0 bits (92), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 45/88 (51%)
Query: 178 LKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMK 237
+ L+ K+ + L+++ L+ + IG G+T+ ++ I + H E++KI R
Sbjct: 1 MNLNNKQKQHLKSIAHPLKPVVMIGNNGLTKAVLAEIEQTLEHHEIIKIKITTEKRETKS 60
Query: 238 RTHDSLERKTGGLVVWRSGSKIILYRGA 265
D++ KT +V G+ ++LYR A
Sbjct: 61 NIADTIVDKTNATIVQIIGNILVLYRPA 88
>gi|421768867|ref|ZP_16205577.1| RNA binding protein [Lactobacillus rhamnosus LRHMDP2]
gi|421770980|ref|ZP_16207641.1| RNA binding protein [Lactobacillus rhamnosus LRHMDP3]
gi|411185716|gb|EKS52843.1| RNA binding protein [Lactobacillus rhamnosus LRHMDP2]
gi|411186415|gb|EKS53539.1| RNA binding protein [Lactobacillus rhamnosus LRHMDP3]
Length = 103
Score = 40.0 bits (92), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Query: 180 LSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRT 239
L+GK+ R LR+L + + +++GK G+ + V G+ + E+VKI +
Sbjct: 2 LTGKQKRYLRSLAMTTKPLIQVGKNGLGDAFVAGVKDALETRELVKISLLPTADDTPQEV 61
Query: 240 HDSLERKTGGL-VVWRSGSKIILYRGAD 266
D+L+ GL V G +I+Y+ A+
Sbjct: 62 ADTLQAAVAGLEVAQIIGRTVIVYKQAE 89
>gi|189425291|ref|YP_001952468.1| hypothetical protein Glov_2232 [Geobacter lovleyi SZ]
gi|189421550|gb|ACD95948.1| protein of unknown function UPF0044 [Geobacter lovleyi SZ]
Length = 109
Score = 40.0 bits (92), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 42/88 (47%)
Query: 178 LKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMK 237
+ L+GK+ R LR LG L+ + IGK + E ++ E++K+ + C L+
Sbjct: 10 IMLTGKQKRHLRGLGHSLKPVILIGKKELDEALIAETEAALACHELIKVKVLENCMLDRH 69
Query: 238 RTHDSLERKTGGLVVWRSGSKIILYRGA 265
++L TG V G +LYR A
Sbjct: 70 EAAEALSEATGSDVAQVLGKTFLLYRAA 97
>gi|381405891|ref|ZP_09930575.1| RNA-binding protein YhbY [Pantoea sp. Sc1]
gi|380739090|gb|EIC00154.1| RNA-binding protein YhbY [Pantoea sp. Sc1]
Length = 97
Score = 40.0 bits (92), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 45/86 (52%)
Query: 178 LKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMK 237
+ LS K+ + L+ L L+ + +G G+TEG++ I + H E++K+ R +
Sbjct: 1 MNLSTKQKQHLKGLAHPLKPVVMLGGNGLTEGVLAEIEQALSHHELIKVKIASEDRETKQ 60
Query: 238 RTHDSLERKTGGLVVWRSGSKIILYR 263
D++ R+TG V G ++LYR
Sbjct: 61 LIVDAIVRETGASNVQVIGKTLVLYR 86
>gi|410861592|ref|YP_006976826.1| RNA binding protein [Alteromonas macleodii AltDE1]
gi|410818854|gb|AFV85471.1| RNA binding protein [Alteromonas macleodii AltDE1]
Length = 97
Score = 40.0 bits (92), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 45/86 (52%)
Query: 178 LKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMK 237
+KLS K+ + L+ L L+ +++G G+TEG+V I H E++K+ R
Sbjct: 1 MKLSNKQKQFLKGLAHPLKPVVQLGGNGLTEGVVAEIDNALNHHELIKVKVPTDDREEKA 60
Query: 238 RTHDSLERKTGGLVVWRSGSKIILYR 263
D++ R+T + + G +I+YR
Sbjct: 61 LIMDAIVRETNAVKLQVIGHTLIIYR 86
>gi|283788182|ref|YP_003368047.1| hypothetical protein ROD_46411 [Citrobacter rodentium ICC168]
gi|282951636|emb|CBG91336.1| conserved hypothetical protein [Citrobacter rodentium ICC168]
Length = 110
Score = 40.0 bits (92), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 44/86 (51%)
Query: 178 LKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMK 237
+ LS K+ + L+ L L+ + +G G+TEG++ I + H E++K+ R
Sbjct: 14 MNLSTKQKQHLKGLAHPLKPVVMLGNNGLTEGVLAEIEQALEHHELIKVKIASEDRETKT 73
Query: 238 RTHDSLERKTGGLVVWRSGSKIILYR 263
D++ R+TG V G ++LYR
Sbjct: 74 LIVDAIVRETGACNVQVIGKMLVLYR 99
>gi|335429481|ref|ZP_08556379.1| hypothetical protein HLPCO_10908 [Haloplasma contractile SSD-17B]
gi|334889491|gb|EGM27776.1| hypothetical protein HLPCO_10908 [Haloplasma contractile SSD-17B]
Length = 96
Score = 40.0 bits (92), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 44/84 (52%)
Query: 180 LSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRT 239
L+GK+ R LR+L + +IGK G+++ + + + E++K+ C L+
Sbjct: 2 LTGKQRRHLRSLAHKVNPVTQIGKNGLSDNLFKTLDDALEAHELIKVSVLQNCLLDKDEI 61
Query: 240 HDSLERKTGGLVVWRSGSKIILYR 263
+SL + V + G++I+LYR
Sbjct: 62 TESLTNELEAERVQQIGNQIVLYR 85
>gi|432992286|ref|ZP_20180945.1| RNA-binding protein YhbY [Escherichia coli KTE217]
gi|433112418|ref|ZP_20298274.1| RNA-binding protein YhbY [Escherichia coli KTE150]
gi|431492555|gb|ELH72156.1| RNA-binding protein YhbY [Escherichia coli KTE217]
gi|431626288|gb|ELI94840.1| RNA-binding protein YhbY [Escherichia coli KTE150]
Length = 97
Score = 39.7 bits (91), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Query: 178 LKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEV--VKIVCEDLCRLN 235
+ LS K+ + L+ L L+ + +G G+TEG++ I + H E+ VKI ED R
Sbjct: 1 MNLSTKQKQHLKGLAHPLKPVVLLGSNGLTEGVLAEIEQALEHHELIKVKIATED--RET 58
Query: 236 MKRTHDSLERKTGGLVVWRSGSKIILYR 263
T +++ R+TG V G ++LYR
Sbjct: 59 KTLTVEAIVRETGACNVQVIGKTLVLYR 86
>gi|379795953|ref|YP_005325951.1| RNA binding protein [Staphylococcus aureus subsp. aureus MSHR1132]
gi|356872943|emb|CCE59282.1| RNA binding protein [Staphylococcus aureus subsp. aureus MSHR1132]
Length = 96
Score = 39.7 bits (91), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 42/84 (50%)
Query: 180 LSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRT 239
L+GK+ R LR+L + +IGK GI E ++ I + + E++K+ + K
Sbjct: 2 LTGKQKRYLRSLAHNIDPIFQIGKGGINENMIQQIDDTLENRELIKVHVLQNNFDDKKEL 61
Query: 240 HDSLERKTGGLVVWRSGSKIILYR 263
+L T +V GS I++YR
Sbjct: 62 AQTLSEATHSELVQVIGSMIVIYR 85
>gi|300721529|ref|YP_003710804.1| RNA binding protein [Xenorhabdus nematophila ATCC 19061]
gi|297628021|emb|CBJ88570.1| putative RNA binding protein [Xenorhabdus nematophila ATCC 19061]
Length = 108
Score = 39.7 bits (91), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 49/90 (54%)
Query: 177 ELKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNM 236
++ L+ K+++ L++L L+ + IG G+TEG++ I + H E++K+ R
Sbjct: 11 KMTLNKKQVQYLKSLAHSLKPVVMIGNNGLTEGVLAEIEQTLSHHELIKVKVAGEDREIK 70
Query: 237 KRTHDSLERKTGGLVVWRSGSKIILYRGAD 266
+++ R+TG V G ++LYR ++
Sbjct: 71 TLIAEAIVRETGAHNVQIIGKMLVLYRPSE 100
>gi|242242873|ref|ZP_04797318.1| RNA binding protein [Staphylococcus epidermidis W23144]
gi|242233648|gb|EES35960.1| RNA binding protein [Staphylococcus epidermidis W23144]
Length = 97
Score = 39.7 bits (91), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 8/88 (9%)
Query: 178 LKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVC--------E 229
+ L+GK+ R LR+L + +IGK GI E ++ I E E++KI +
Sbjct: 1 MMLTGKQKRYLRSLAHNIDPTFQIGKGGINENMIQQISETLEKRELIKIHILQNNFDDKK 60
Query: 230 DLCRLNMKRTHDSLERKTGGLVVWRSGS 257
DL L ++T L + G ++V S
Sbjct: 61 DLAALVAEQTQSELVQIIGSMIVLYKES 88
>gi|415885592|ref|ZP_11547520.1| hypothetical protein MGA3_10190 [Bacillus methanolicus MGA3]
gi|387591261|gb|EIJ83580.1| hypothetical protein MGA3_10190 [Bacillus methanolicus MGA3]
Length = 96
Score = 39.7 bits (91), Expect = 8.9, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 41/84 (48%)
Query: 180 LSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRT 239
L+GK+ R LR+ L ++GKAG+ E ++ + + E++KI C +
Sbjct: 2 LTGKQKRFLRSEAHHLNPIFQVGKAGVNENMIKQVFDALEARELMKISVLQNCEDDKNTV 61
Query: 240 HDSLERKTGGLVVWRSGSKIILYR 263
L TG +V G+ IILY+
Sbjct: 62 AHQLAEGTGADIVQIIGNTIILYK 85
>gi|429091552|ref|ZP_19154220.1| FIG004454: RNA binding protein [Cronobacter dublinensis 1210]
gi|429098474|ref|ZP_19160580.1| RNA binding protein [Cronobacter dublinensis 582]
gi|426284814|emb|CCJ86693.1| RNA binding protein [Cronobacter dublinensis 582]
gi|426743882|emb|CCJ80333.1| FIG004454: RNA binding protein [Cronobacter dublinensis 1210]
Length = 97
Score = 39.7 bits (91), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 44/86 (51%)
Query: 178 LKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMK 237
+ LS K+ + L+ L L+ + +G G+TEG++ I + H E++K+ R
Sbjct: 1 MNLSTKQKQHLKGLAHPLKPVVMLGNNGLTEGVLAEIEQALEHHELIKVKIATEERETKT 60
Query: 238 RTHDSLERKTGGLVVWRSGSKIILYR 263
D++ R+TG V G ++LYR
Sbjct: 61 LIVDAIVRETGACNVQVIGKTLVLYR 86
>gi|199597216|ref|ZP_03210648.1| RNA-binding protein, KH domain [Lactobacillus rhamnosus HN001]
gi|258508732|ref|YP_003171483.1| RNA-binding protein [Lactobacillus rhamnosus GG]
gi|385828393|ref|YP_005866165.1| hypothetical protein [Lactobacillus rhamnosus GG]
gi|199592020|gb|EDZ00095.1| RNA-binding protein, KH domain [Lactobacillus rhamnosus HN001]
gi|257148659|emb|CAR87632.1| RNA-binding protein [Lactobacillus rhamnosus GG]
gi|259650038|dbj|BAI42200.1| conserved hypothetical protein [Lactobacillus rhamnosus GG]
Length = 103
Score = 39.7 bits (91), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Query: 180 LSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRT 239
L+GK+ R LR+L + + +++GK G+ + V G+ + E+VKI +
Sbjct: 2 LTGKQKRYLRSLAMTTKPLIQVGKNGLGDAFVAGVKDALETRELVKISLLPTADDTPQEV 61
Query: 240 HDSLERKTGGL-VVWRSGSKIILYRGAD 266
D+L+ GL V G +I+Y+ A+
Sbjct: 62 ADTLQAAIAGLEVAQIIGRTVIVYKQAE 89
>gi|261345169|ref|ZP_05972813.1| RNA-binding protein YhbY [Providencia rustigianii DSM 4541]
gi|282566861|gb|EFB72396.1| RNA-binding protein YhbY [Providencia rustigianii DSM 4541]
Length = 97
Score = 39.7 bits (91), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 44/86 (51%)
Query: 178 LKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMK 237
+ L+ K+++ L++L L + IG G+TEG++ I H E++K+ R
Sbjct: 1 MNLNKKQIQHLKSLAHHLNPVVMIGNNGLTEGVLAEIELSLTHHELIKVKIAGEDRDTKN 60
Query: 238 RTHDSLERKTGGLVVWRSGSKIILYR 263
D++ R+TG V G ++LYR
Sbjct: 61 LIADAIVRETGAANVQVIGKILVLYR 86
>gi|258424022|ref|ZP_05686904.1| conserved hypothetical protein [Staphylococcus aureus A9635]
gi|282916865|ref|ZP_06324623.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
D139]
gi|283770670|ref|ZP_06343562.1| YqeI [Staphylococcus aureus subsp. aureus H19]
gi|384547827|ref|YP_005737080.1| hypothetical protein SAOV_1594 [Staphylococcus aureus subsp. aureus
ED133]
gi|385781880|ref|YP_005758051.1| hypothetical protein MS7_1612 [Staphylococcus aureus subsp. aureus
11819-97]
gi|387602935|ref|YP_005734456.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
ST398]
gi|387780686|ref|YP_005755484.1| hypothetical protein SARLGA251_15000 [Staphylococcus aureus subsp.
aureus LGA251]
gi|404478945|ref|YP_006710375.1| hypothetical protein C248_1637 [Staphylococcus aureus 08BA02176]
gi|416842865|ref|ZP_11905192.1| hypothetical protein SAO11_2603 [Staphylococcus aureus O11]
gi|416846545|ref|ZP_11906594.1| hypothetical protein SAO46_1236 [Staphylococcus aureus O46]
gi|417889943|ref|ZP_12534022.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus 21200]
gi|418284092|ref|ZP_12896824.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus 21202]
gi|418308956|ref|ZP_12920537.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus 21194]
gi|418310205|ref|ZP_12921755.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus 21331]
gi|418558857|ref|ZP_13123404.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus 21252]
gi|418574487|ref|ZP_13138656.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus 21333]
gi|418889410|ref|ZP_13443543.1| hypothetical protein SACIG1524_2024 [Staphylococcus aureus subsp.
aureus CIG1524]
gi|418978319|ref|ZP_13526120.1| RNA binding protein (CRS1/YhbY family) [Staphylococcus aureus
subsp. aureus DR10]
gi|418994320|ref|ZP_13541955.1| hypothetical protein SACIG290_2201 [Staphylococcus aureus subsp.
aureus CIG290]
gi|257845643|gb|EEV69675.1| conserved hypothetical protein [Staphylococcus aureus A9635]
gi|282319352|gb|EFB49704.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
D139]
gi|283460817|gb|EFC07907.1| YqeI [Staphylococcus aureus subsp. aureus H19]
gi|283470873|emb|CAQ50084.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
ST398]
gi|298694876|gb|ADI98098.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
ED133]
gi|323438560|gb|EGA96307.1| hypothetical protein SAO11_2603 [Staphylococcus aureus O11]
gi|323442799|gb|EGB00424.1| hypothetical protein SAO46_1236 [Staphylococcus aureus O46]
gi|341855636|gb|EGS96480.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus 21200]
gi|344177788|emb|CCC88267.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
LGA251]
gi|364522869|gb|AEW65619.1| hypothetical protein MS7_1612 [Staphylococcus aureus subsp. aureus
11819-97]
gi|365164956|gb|EHM56786.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus 21202]
gi|365236105|gb|EHM77007.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus 21194]
gi|365237662|gb|EHM78508.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus 21331]
gi|371976207|gb|EHO93497.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus 21252]
gi|371979214|gb|EHO96449.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus 21333]
gi|377744117|gb|EHT68095.1| hypothetical protein SACIG290_2201 [Staphylococcus aureus subsp.
aureus CIG290]
gi|377752918|gb|EHT76836.1| hypothetical protein SACIG1524_2024 [Staphylococcus aureus subsp.
aureus CIG1524]
gi|379993935|gb|EIA15380.1| RNA binding protein (CRS1/YhbY family) [Staphylococcus aureus
subsp. aureus DR10]
gi|404440434|gb|AFR73627.1| hypothetical protein C248_1637 [Staphylococcus aureus 08BA02176]
Length = 96
Score = 39.7 bits (91), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 43/84 (51%)
Query: 180 LSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRT 239
L+GK+ R LR+L + +IGK GI E ++ I + + E++K+ + K
Sbjct: 2 LTGKQKRYLRSLAHNIDPIFQIGKGGINENMIKQIDDTLENRELIKVHVLQNNFDDKKEL 61
Query: 240 HDSLERKTGGLVVWRSGSKIILYR 263
++L T +V GS I++YR
Sbjct: 62 AETLSEATRSELVQVIGSMIVIYR 85
>gi|354599200|ref|ZP_09017217.1| RNA-binding, CRM domain [Brenneria sp. EniD312]
gi|353677135|gb|EHD23168.1| RNA-binding, CRM domain [Brenneria sp. EniD312]
Length = 97
Score = 39.7 bits (91), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 45/88 (51%)
Query: 178 LKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMK 237
+ LS K+ + L+ L L+ + +G G+TEG++ I + H E++K+ R
Sbjct: 1 MNLSNKQKQHLKGLAHPLKPVVMLGNNGLTEGVLAEIEQALEHHELIKVKVASEDRETKT 60
Query: 238 RTHDSLERKTGGLVVWRSGSKIILYRGA 265
D++ R+TG V G ++LYR A
Sbjct: 61 LIIDAIIRETGAGNVQVIGHTLVLYRPA 88
>gi|418950097|ref|ZP_13502302.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus IS-160]
gi|375377771|gb|EHS81216.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus IS-160]
Length = 96
Score = 39.7 bits (91), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 43/84 (51%)
Query: 180 LSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRT 239
L+GK+ R LR+L + +IGK GI E ++ I + + E++K+ + K
Sbjct: 2 LTGKQKRYLRSLAHNIDPIFQIGKGGINENMIKQIDDTLENRELIKVHVLQNNFDDKKEL 61
Query: 240 HDSLERKTGGLVVWRSGSKIILYR 263
++L T +V GS I++YR
Sbjct: 62 AETLSEATRSELVQLIGSMIVIYR 85
>gi|238918416|ref|YP_002931930.1| conserved hypothetical protein TIGR00253 [Edwardsiella ictaluri
93-146]
gi|238867984|gb|ACR67695.1| conserved hypothetical protein TIGR00253 [Edwardsiella ictaluri
93-146]
Length = 97
Score = 39.7 bits (91), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 47/86 (54%)
Query: 178 LKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMK 237
+ L+ K+ + L++L L+ +++G G+TEG++ I + H E++K+ R
Sbjct: 1 MNLTNKQKQHLKSLAHSLKPVVQLGANGLTEGVLAEIEQALAHHELIKVRIAAEERDTKT 60
Query: 238 RTHDSLERKTGGLVVWRSGSKIILYR 263
+++ R+TG V G+ +++YR
Sbjct: 61 LIANAIVRETGAYNVQLIGNILVIYR 86
>gi|15924585|ref|NP_372119.1| hypothetical protein SAV1595 [Staphylococcus aureus subsp. aureus
Mu50]
gi|15927175|ref|NP_374708.1| hypothetical protein SA1423 [Staphylococcus aureus subsp. aureus
N315]
gi|21283275|ref|NP_646363.1| hypothetical protein MW1546 [Staphylococcus aureus subsp. aureus
MW2]
gi|49486429|ref|YP_043650.1| hypothetical protein SAS1532 [Staphylococcus aureus subsp. aureus
MSSA476]
gi|148268078|ref|YP_001247021.1| hypothetical protein SaurJH9_1652 [Staphylococcus aureus subsp.
aureus JH9]
gi|150394147|ref|YP_001316822.1| hypothetical protein SaurJH1_1687 [Staphylococcus aureus subsp.
aureus JH1]
gi|156979913|ref|YP_001442172.1| hypothetical protein SAHV_1582 [Staphylococcus aureus subsp. aureus
Mu3]
gi|253315368|ref|ZP_04838581.1| hypothetical protein SauraC_04297 [Staphylococcus aureus subsp.
aureus str. CF-Marseille]
gi|255006380|ref|ZP_05144981.2| hypothetical protein SauraM_07925 [Staphylococcus aureus subsp.
aureus Mu50-omega]
gi|257793671|ref|ZP_05642650.1| conserved hypothetical protein [Staphylococcus aureus A9781]
gi|258411030|ref|ZP_05681310.1| conserved hypothetical protein [Staphylococcus aureus A9763]
gi|258420167|ref|ZP_05683122.1| conserved hypothetical protein [Staphylococcus aureus A9719]
gi|258437426|ref|ZP_05689410.1| conserved hypothetical protein [Staphylococcus aureus A9299]
gi|258443632|ref|ZP_05691971.1| conserved hypothetical protein [Staphylococcus aureus A8115]
gi|258446840|ref|ZP_05694994.1| conserved hypothetical protein [Staphylococcus aureus A6300]
gi|258448754|ref|ZP_05696866.1| conserved hypothetical protein [Staphylococcus aureus A6224]
gi|258453571|ref|ZP_05701549.1| conserved hypothetical protein [Staphylococcus aureus A5937]
gi|269203222|ref|YP_003282491.1| hypothetical protein SAAV_1586 [Staphylococcus aureus subsp. aureus
ED98]
gi|282893096|ref|ZP_06301330.1| conserved hypothetical protein [Staphylococcus aureus A8117]
gi|282928228|ref|ZP_06335833.1| conserved hypothetical protein [Staphylococcus aureus A10102]
gi|295406718|ref|ZP_06816523.1| hypothetical protein SMAG_01888 [Staphylococcus aureus A8819]
gi|296276601|ref|ZP_06859108.1| RNA-binding protein YhbY [Staphylococcus aureus subsp. aureus MR1]
gi|297207686|ref|ZP_06924121.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
ATCC 51811]
gi|297245700|ref|ZP_06929565.1| hypothetical protein SLAG_01795 [Staphylococcus aureus A8796]
gi|300911767|ref|ZP_07129210.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
TCH70]
gi|379021376|ref|YP_005298038.1| hypothetical protein M013TW_1609 [Staphylococcus aureus subsp.
aureus M013]
gi|384550422|ref|YP_005739674.1| RNA-binding protein YbhY [Staphylococcus aureus subsp. aureus
JKD6159]
gi|384864815|ref|YP_005750174.1| CRS1 / YhbY domain protein [Staphylococcus aureus subsp. aureus
ECT-R 2]
gi|386831204|ref|YP_006237858.1| hypothetical protein SAEMRSA15_15140 [Staphylococcus aureus subsp.
aureus HO 5096 0412]
gi|387150738|ref|YP_005742302.1| RNA binding protein [Staphylococcus aureus 04-02981]
gi|415692713|ref|ZP_11454633.1| hypothetical protein CGSSa03_02268 [Staphylococcus aureus subsp.
aureus CGS03]
gi|417651197|ref|ZP_12300960.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus 21172]
gi|417653494|ref|ZP_12303225.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus 21193]
gi|417797469|ref|ZP_12444665.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus 21305]
gi|417799888|ref|ZP_12447020.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus 21310]
gi|417802937|ref|ZP_12449987.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus 21318]
gi|417894365|ref|ZP_12538384.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus 21201]
gi|417896969|ref|ZP_12540912.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus 21235]
gi|417901193|ref|ZP_12545070.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus 21266]
gi|417905444|ref|ZP_12549255.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus 21269]
gi|418316401|ref|ZP_12927839.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus 21340]
gi|418424743|ref|ZP_12997857.1| YhbY family putative RNA-binding protein [Staphylococcus aureus
subsp. aureus VRS1]
gi|418427737|ref|ZP_13000742.1| YhbY family putative RNA-binding protein [Staphylococcus aureus
subsp. aureus VRS2]
gi|418430580|ref|ZP_13003490.1| YhbY family putative RNA-binding protein [Staphylococcus aureus
subsp. aureus VRS3a]
gi|418433722|ref|ZP_13006314.1| YhbY family putative RNA-binding protein [Staphylococcus aureus
subsp. aureus VRS4]
gi|418437217|ref|ZP_13009013.1| hypothetical protein MQI_01301 [Staphylococcus aureus subsp. aureus
VRS5]
gi|418440117|ref|ZP_13011818.1| hypothetical protein MQK_01156 [Staphylococcus aureus subsp. aureus
VRS6]
gi|418443135|ref|ZP_13014734.1| YhbY family putative RNA-binding protein [Staphylococcus aureus
subsp. aureus VRS7]
gi|418446199|ref|ZP_13017672.1| hypothetical protein MQO_01984 [Staphylococcus aureus subsp. aureus
VRS8]
gi|418449213|ref|ZP_13020598.1| hypothetical protein MQQ_02629 [Staphylococcus aureus subsp. aureus
VRS9]
gi|418452024|ref|ZP_13023358.1| hypothetical protein MQS_00502 [Staphylococcus aureus subsp. aureus
VRS10]
gi|418455018|ref|ZP_13026277.1| hypothetical protein MQU_01133 [Staphylococcus aureus subsp. aureus
VRS11a]
gi|418457896|ref|ZP_13029095.1| hypothetical protein MQW_01413 [Staphylococcus aureus subsp. aureus
VRS11b]
gi|418562516|ref|ZP_13126973.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus 21262]
gi|418566956|ref|ZP_13131321.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus 21272]
gi|418640325|ref|ZP_13202557.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus IS-3]
gi|418652900|ref|ZP_13214863.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus IS-99]
gi|418655637|ref|ZP_13217486.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus IS-105]
gi|418660793|ref|ZP_13222405.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus IS-122]
gi|418878512|ref|ZP_13432747.1| hypothetical protein SACIG1165_2145 [Staphylococcus aureus subsp.
aureus CIG1165]
gi|418881278|ref|ZP_13435495.1| hypothetical protein SACIG1213_2106 [Staphylococcus aureus subsp.
aureus CIG1213]
gi|418884127|ref|ZP_13438320.1| hypothetical protein SACIG1769_2147 [Staphylococcus aureus subsp.
aureus CIG1769]
gi|418886859|ref|ZP_13441007.1| hypothetical protein SACIG1150_2095 [Staphylococcus aureus subsp.
aureus CIG1150]
gi|418895357|ref|ZP_13449452.1| hypothetical protein SACIG1057_2486 [Staphylococcus aureus subsp.
aureus CIG1057]
gi|418914696|ref|ZP_13468667.1| hypothetical protein SACIGC340D_1958 [Staphylococcus aureus subsp.
aureus CIGC340D]
gi|418920675|ref|ZP_13474607.1| hypothetical protein SACIGC348_2456 [Staphylococcus aureus subsp.
aureus CIGC348]
gi|418931899|ref|ZP_13485734.1| hypothetical protein SACIG1750_2306 [Staphylococcus aureus subsp.
aureus CIG1750]
gi|418934565|ref|ZP_13488387.1| hypothetical protein SACIGC128_2091 [Staphylococcus aureus subsp.
aureus CIGC128]
gi|418988661|ref|ZP_13536333.1| hypothetical protein SACIG1835_1911 [Staphylococcus aureus subsp.
aureus CIG1835]
gi|418991522|ref|ZP_13539183.1| hypothetical protein SACIG1096_2182 [Staphylococcus aureus subsp.
aureus CIG1096]
gi|419784687|ref|ZP_14310450.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus IS-M]
gi|424768944|ref|ZP_18196181.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus CM05]
gi|443637572|ref|ZP_21121647.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus 21236]
gi|448741174|ref|ZP_21723144.1| RNA-binding protein, YhbY family [Staphylococcus aureus KT/314250]
gi|448745069|ref|ZP_21726943.1| Putative Rna Binding Protein [Staphylococcus aureus KT/Y21]
gi|13701393|dbj|BAB42687.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
N315]
gi|14247366|dbj|BAB57757.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
Mu50]
gi|21204715|dbj|BAB95411.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
MW2]
gi|49244872|emb|CAG43333.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
MSSA476]
gi|147741147|gb|ABQ49445.1| protein of unknown function UPF0044 [Staphylococcus aureus subsp.
aureus JH9]
gi|149946599|gb|ABR52535.1| protein of unknown function UPF0044 [Staphylococcus aureus subsp.
aureus JH1]
gi|156722048|dbj|BAF78465.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
Mu3]
gi|257787643|gb|EEV25983.1| conserved hypothetical protein [Staphylococcus aureus A9781]
gi|257840180|gb|EEV64644.1| conserved hypothetical protein [Staphylococcus aureus A9763]
gi|257843878|gb|EEV68272.1| conserved hypothetical protein [Staphylococcus aureus A9719]
gi|257848631|gb|EEV72619.1| conserved hypothetical protein [Staphylococcus aureus A9299]
gi|257851038|gb|EEV74981.1| conserved hypothetical protein [Staphylococcus aureus A8115]
gi|257854415|gb|EEV77364.1| conserved hypothetical protein [Staphylococcus aureus A6300]
gi|257858032|gb|EEV80921.1| conserved hypothetical protein [Staphylococcus aureus A6224]
gi|257864302|gb|EEV87052.1| conserved hypothetical protein [Staphylococcus aureus A5937]
gi|262075512|gb|ACY11485.1| hypothetical protein SAAV_1586 [Staphylococcus aureus subsp. aureus
ED98]
gi|282590035|gb|EFB95117.1| conserved hypothetical protein [Staphylococcus aureus A10102]
gi|282764414|gb|EFC04540.1| conserved hypothetical protein [Staphylococcus aureus A8117]
gi|285817277|gb|ADC37764.1| RNA binding protein [Staphylococcus aureus 04-02981]
gi|294968465|gb|EFG44489.1| hypothetical protein SMAG_01888 [Staphylococcus aureus A8819]
gi|296887703|gb|EFH26601.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
ATCC 51811]
gi|297177351|gb|EFH36603.1| hypothetical protein SLAG_01795 [Staphylococcus aureus A8796]
gi|300886013|gb|EFK81215.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
TCH70]
gi|302333271|gb|ADL23464.1| RNA-binding protein YbhY [Staphylococcus aureus subsp. aureus
JKD6159]
gi|312829982|emb|CBX34824.1| CRS1 / YhbY domain protein [Staphylococcus aureus subsp. aureus
ECT-R 2]
gi|315129873|gb|EFT85863.1| hypothetical protein CGSSa03_02268 [Staphylococcus aureus subsp.
aureus CGS03]
gi|329727381|gb|EGG63837.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus 21172]
gi|329733185|gb|EGG69522.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus 21193]
gi|334266961|gb|EGL85431.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus 21305]
gi|334272420|gb|EGL90785.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus 21310]
gi|334273585|gb|EGL91928.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus 21318]
gi|341840235|gb|EGS81755.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus 21235]
gi|341843720|gb|EGS84942.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus 21269]
gi|341846352|gb|EGS87549.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus 21266]
gi|341852510|gb|EGS93399.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus 21201]
gi|359830685|gb|AEV78663.1| hypothetical protein M013TW_1609 [Staphylococcus aureus subsp.
aureus M013]
gi|365241085|gb|EHM81840.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus 21340]
gi|371973620|gb|EHO90968.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus 21262]
gi|371982660|gb|EHO99808.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus 21272]
gi|375014889|gb|EHS08560.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus IS-3]
gi|375021068|gb|EHS14575.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus IS-99]
gi|375036130|gb|EHS29211.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus IS-105]
gi|375040033|gb|EHS32939.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus IS-122]
gi|377694634|gb|EHT18999.1| hypothetical protein SACIG1165_2145 [Staphylococcus aureus subsp.
aureus CIG1165]
gi|377695163|gb|EHT19527.1| hypothetical protein SACIG1057_2486 [Staphylococcus aureus subsp.
aureus CIG1057]
gi|377713077|gb|EHT37290.1| hypothetical protein SACIG1750_2306 [Staphylococcus aureus subsp.
aureus CIG1750]
gi|377714462|gb|EHT38663.1| hypothetical protein SACIG1769_2147 [Staphylococcus aureus subsp.
aureus CIG1769]
gi|377717754|gb|EHT41929.1| hypothetical protein SACIG1835_1911 [Staphylococcus aureus subsp.
aureus CIG1835]
gi|377723644|gb|EHT47769.1| hypothetical protein SACIG1096_2182 [Staphylococcus aureus subsp.
aureus CIG1096]
gi|377725812|gb|EHT49925.1| hypothetical protein SACIG1150_2095 [Staphylococcus aureus subsp.
aureus CIG1150]
gi|377731021|gb|EHT55079.1| hypothetical protein SACIG1213_2106 [Staphylococcus aureus subsp.
aureus CIG1213]
gi|377757022|gb|EHT80918.1| hypothetical protein SACIGC340D_1958 [Staphylococcus aureus subsp.
aureus CIGC340D]
gi|377764401|gb|EHT88254.1| hypothetical protein SACIGC348_2456 [Staphylococcus aureus subsp.
aureus CIGC348]
gi|377770659|gb|EHT94420.1| hypothetical protein SACIGC128_2091 [Staphylococcus aureus subsp.
aureus CIGC128]
gi|383363897|gb|EID41223.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus IS-M]
gi|385196596|emb|CCG16225.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
HO 5096 0412]
gi|387718025|gb|EIK06020.1| YhbY family putative RNA-binding protein [Staphylococcus aureus
subsp. aureus VRS2]
gi|387718092|gb|EIK06086.1| YhbY family putative RNA-binding protein [Staphylococcus aureus
subsp. aureus VRS3a]
gi|387719522|gb|EIK07467.1| YhbY family putative RNA-binding protein [Staphylococcus aureus
subsp. aureus VRS1]
gi|387724946|gb|EIK12577.1| YhbY family putative RNA-binding protein [Staphylococcus aureus
subsp. aureus VRS4]
gi|387727205|gb|EIK14737.1| hypothetical protein MQI_01301 [Staphylococcus aureus subsp. aureus
VRS5]
gi|387730267|gb|EIK17674.1| hypothetical protein MQK_01156 [Staphylococcus aureus subsp. aureus
VRS6]
gi|387735131|gb|EIK22268.1| hypothetical protein MQO_01984 [Staphylococcus aureus subsp. aureus
VRS8]
gi|387736493|gb|EIK23584.1| hypothetical protein MQQ_02629 [Staphylococcus aureus subsp. aureus
VRS9]
gi|387736811|gb|EIK23899.1| YhbY family putative RNA-binding protein [Staphylococcus aureus
subsp. aureus VRS7]
gi|387744905|gb|EIK31669.1| hypothetical protein MQS_00502 [Staphylococcus aureus subsp. aureus
VRS10]
gi|387745071|gb|EIK31833.1| hypothetical protein MQU_01133 [Staphylococcus aureus subsp. aureus
VRS11a]
gi|387746664|gb|EIK33393.1| hypothetical protein MQW_01413 [Staphylococcus aureus subsp. aureus
VRS11b]
gi|402348335|gb|EJU83327.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus CM05]
gi|443405355|gb|ELS63959.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus 21236]
gi|445548088|gb|ELY16344.1| RNA-binding protein, YhbY family [Staphylococcus aureus KT/314250]
gi|445561608|gb|ELY17801.1| Putative Rna Binding Protein [Staphylococcus aureus KT/Y21]
Length = 96
Score = 39.7 bits (91), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 43/84 (51%)
Query: 180 LSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRT 239
L+GK+ R LR+L + +IGK GI E ++ I + + E++K+ + K
Sbjct: 2 LTGKQKRYLRSLAHNIDPIFQIGKGGINENMIKQIDDTLENRELIKVHVLQNNFDDKKEL 61
Query: 240 HDSLERKTGGLVVWRSGSKIILYR 263
++L T +V GS I++YR
Sbjct: 62 AETLSEATRSELVQVIGSMIVIYR 85
>gi|269137755|ref|YP_003294455.1| RNA-binding protein YhbY [Edwardsiella tarda EIB202]
gi|387866499|ref|YP_005697968.1| RNA binding protein [Edwardsiella tarda FL6-60]
gi|267983415|gb|ACY83244.1| RNA-binding protein YhbY [Edwardsiella tarda EIB202]
gi|304557812|gb|ADM40476.1| RNA binding protein [Edwardsiella tarda FL6-60]
Length = 97
Score = 39.7 bits (91), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 47/86 (54%)
Query: 178 LKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMK 237
+ L+ K+ + L++L L+ +++G G+TEG++ I + H E++K+ R
Sbjct: 1 MNLTNKQKQHLKSLAHSLKPVVQLGANGLTEGVLAEIEQALAHHELIKVKIAAEERETKT 60
Query: 238 RTHDSLERKTGGLVVWRSGSKIILYR 263
+++ R+TG V G+ +++YR
Sbjct: 61 LIANAIVRETGACNVQLIGNILVIYR 86
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.313 0.130 0.368
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,576,506,361
Number of Sequences: 23463169
Number of extensions: 718386105
Number of successful extensions: 1896059
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 473
Number of HSP's successfully gapped in prelim test: 1181
Number of HSP's that attempted gapping in prelim test: 1887291
Number of HSP's gapped (non-prelim): 7674
length of query: 1076
length of database: 8,064,228,071
effective HSP length: 153
effective length of query: 923
effective length of database: 8,769,330,510
effective search space: 8094092060730
effective search space used: 8094092060730
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 83 (36.6 bits)