Query 001446
Match_columns 1075
No_of_seqs 320 out of 3708
Neff 8.6
Searched_HMMs 29240
Date Tue Mar 26 16:47:06 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001446.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_746-750//hhsearch_pdb/001446hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f4c_A Multidrug resistance pr 1.0 1 1 1106.2 85.1 983 5-1065 256-1292(1321)
2 3g5u_A MCG1178, multidrug resi 1.0 1 1 930.2 79.4 971 11-1065 234-1246(1284)
3 4f4c_A Multidrug resistance pr 1.0 1 1 570.7 43.2 470 539-1065 144-629 (1321)
4 3g5u_A MCG1178, multidrug resi 1.0 1 1 518.0 41.7 468 543-1065 120-601 (1284)
5 3qf4_B Uncharacterized ABC tra 1.0 1 1 502.2 42.4 462 547-1065 93-566 (598)
6 3qf4_A ABC transporter, ATP-bi 1.0 1 1 501.2 48.7 462 548-1065 80-554 (587)
7 4a82_A Cystic fibrosis transme 1.0 1 1 491.5 44.1 459 551-1065 81-552 (578)
8 3b5x_A Lipid A export ATP-bind 1.0 1 1 488.5 53.9 454 555-1065 89-555 (582)
9 3b60_A Lipid A export ATP-bind 1.0 1 1 487.7 53.1 460 555-1065 89-555 (582)
10 2yl4_A ATP-binding cassette SU 1.0 1 1 480.8 48.9 461 552-1065 83-558 (595)
No 1
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=1.00 E-value=1 Score=1106.17 Aligned_cols=983 Identities=15% Similarity=0.179 Sum_probs=605.2
Q ss_pred CCCCHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 47532212099999999799999999940999984189148899999999999999999999999999999999999999
Q 001446 5 FSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKYLGA 84 (1075)
Q Consensus 5 ~~~~~~~l~~~~~~~e~~~r~~l~~~~~~~e~I~~~~~e~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (1075)
+++...++..+.++..++....+.....++++||+|++|+.+.+++.+..+...+... +.....+....... .+.
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~-~~~- 330 (1321)
T 4f4c_A 256 IAKSMSTFAIRETLRYAKAGKVVEETISSIRTVVSLNGLRYELERYSTAVEEAKKAGV---LKGLFLGISFGAMQ-ASN- 330 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH-HHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH-HHH-
T ss_conf 9999999999999999999999999998399999821429999999999999999999---99999999999999-999-
Q ss_pred HHHHHHHHHHHHCCCCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 999999886441053156-8631568999999999999999999999999999999999999999999999861101225
Q 001446 85 TVAVILIIEPFFAGNLKP-DTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHELMVISRELSIE 163 (1075)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 163 (1075)
...+++..|+++.+.. +..+.|.. ++. ...+......+..+...+..+.....+++|++++++.+++.+..
T Consensus 331 --~~~~~~~~~~g~~~v~~g~lt~g~~--~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~ 402 (1321)
T 4f4c_A 331 --FISFALAFYIGVGWVHDGSLNFGDM--LTT----FSSVMMGSMALGLAGPQLAVLGTAQGAASGIYEVLDRKPVIDSS 402 (1321)
T ss_dssp --HHHHHHHHHHHHHHHTTTSSCHHHH--HHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCCSSCS
T ss_pred --HHHHHHHHHHHHHHHHCCCCCHHHH--HHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf --9999999999999999599869999--999----99999999999989999999999999999999997178534566
Q ss_pred CCCCCCCCCCCCCCCCCCEEEEEEEEECCC--CCEEEEECEEEEECCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 889888898888888761999958999599--970145101889189989999598606999999995799999427996
Q 001446 164 DKSPQRNGSRNYFSEANYIEFSGVKVVTPT--GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAK 241 (1075)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~--~~~~l~~~~l~i~~G~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~ 241 (1075)
.... ....+..+.|+|+||+|.||+ +.++|+|+||++++|++++|+||||||||||+++|+|+|+|.+|+|.+
T Consensus 403 ~~~~-----~~~~~~~g~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~i 477 (1321)
T 4f4c_A 403 SKAG-----RKDMKIKGDITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITI 477 (1321)
T ss_dssp SSCC-----CCCCCCCCCEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEE
T ss_pred CCCC-----CCCCCCCCCEEEEEEEEECCCCCCCCEEECEEEEECCCCEEEEEECCCCCHHHHHHHHCCCCCCCCCCCCC
T ss_conf 6556-----56778887679998554079999874333318862288278998058985778888754565164486157
Q ss_pred CCCC------CCCCCCEEEECCCCCCCCCCHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHCCCCCCCC---CC
Q ss_conf 9968------33346489990789998577889851799777656768999999999976990577219998566---78
Q 001446 242 PGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI---NW 312 (1075)
Q Consensus 242 ~~~~------~~~~~~i~~v~Q~p~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~---~~ 312 (1075)
+|.+ .++|++++||+|+||+|++||||||.|+.+ ..+++++.++++.++++++++.+|.++++ +.
T Consensus 478 dG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~~g~~------~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~ 551 (1321)
T 4f4c_A 478 DGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKE------GITREEMVAACKMANAEKFIKTLPNGYNTLVGDR 551 (1321)
T ss_dssp TTEETTTSCHHHHHHHEEEECSSCCCCSEEHHHHHHTTCT------TCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSS
T ss_pred CCCCCHHCCHHHHHHCCCCCCCCCEEECCCHHHHHHHHCC------CCHHHHHHHHHHHCCCHHHHHCCCCCCCCEECCC
T ss_conf 9965011259998504666587533207861678864155------2209999999987565468870888886075589
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHH--CCCEEEEEECCHHHHHHCCEEEEECCCCCE
Q ss_conf 998793499999999987179979998579979999999999999981--397599991692168617949999189857
Q 001446 313 GDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVAFHDVVLSLDGEGEW 390 (1075)
Q Consensus 313 g~~LSgGqkqRi~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~--~~~t~i~vtH~~~~~~~~d~i~~l~~~~~~ 390 (1075)
|.+|||||||||+||||+|++|+|+|||||||+||+++++.+++.+.+ .++|+|+||||++.++.+|+|++|++ |.
T Consensus 552 G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiiaHrls~i~~aD~Iivl~~--G~ 629 (1321)
T 4f4c_A 552 GTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHRLSTIRNADLIISCKN--GQ 629 (1321)
T ss_dssp SCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEECSCTTTTTTCSEEEEEET--TE
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHCCEEEEEEC--CE
T ss_conf 8877777879999999872599989984554468878999999999998479889997363878986898999639--96
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCCC---------CCC-HHHHHHHHHHHHCC----CCCCCCCCCHHHHHHHH--HHCCC
Q ss_conf 7832788863222223322225654---------421-13456778664211----23343796302358887--52088
Q 001446 391 RVHDKRDGSSVVTKSGINMIKSSET---------DRQ-SDAMAVEQAFVTAK----KDSAFSNPKAQSYVSEV--IAASP 454 (1075)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~-~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~--~~~~~ 454 (1075)
.++.++|++++...+.+......+. +.. .............. ................. ....+
T Consensus 630 ive~Gth~eL~~~~g~y~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 709 (1321)
T 4f4c_A 630 VVEVGDHRALMAQQGLYYDLVTAQTFTDAVDSAAEGKFSRENSVARQTSEHEGLSRQASEMDDIMNRVRSSTIGSITNGP 709 (1321)
T ss_dssp EEEEECHHHHHTTTCHHHHHHHHHHHHHHHHHHHCC--------------------------------------------
T ss_pred EECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCC
T ss_conf 51368999999853279999996221222233233443322321112222234222222211022111013212456774
Q ss_pred CCCC-CCCC-C----CCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHH---HHHHHHHHHHHHHHHHCCHHHHH
Q ss_conf 7789-9999-8----765545788751256876778661231114569999999---99999999777765421168999
Q 001446 455 IADH-NVPL-P----VFPQLKSAPRILPLRVADMFKVLVPTVFDKQGAQLLAVA---FLVVSRTWISDRIASLNGTTVKY 525 (1075)
Q Consensus 455 ~~~~-~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~~~ 525 (1075)
..+. .... . .+.+..+..+.....+..+++...+.+.....+...+.. .......|+..|...+......
T Consensus 710 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~- 788 (1321)
T 4f4c_A 710 VIDEKEERIGKDALSRLKQELEENNAQKTNLFEILYHARPHALSLFIGMSTATIGGFIYPTYSVFFTSFMNVFAGNPAD- 788 (1321)
T ss_dssp ------CCCCCCHHHHHHHTTTTSCCCCCCHHHHHHHTGGGHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHTSSCSST-
T ss_pred CHHHHHHHCCCHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH-
T ss_conf 0257775315403899999999707863109999999877899999999999999999999999999999875179345-
Q ss_pred HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCEEEEECCCCCCCCCCCHHHHH
Q ss_conf 98339978999999999999999999999999999999699999999999976258-86177715899999974306888
Q 001446 526 VLEQDKASFVRLIGVSVLQSAASSFIAPSIRHLTARLALGWRIRMTQHLLKSYLRK-NSFYKVFNMSSKSIDADQRITHD 604 (1075)
Q Consensus 526 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~l~~-~~~~~~~~~~~~~~~~~~rl~~D 604 (1075)
......++ ..++++.+++..+..+...++......++..+++.++++..++. ..||+.... ..+++.+|+++|
T Consensus 789 --~~~~~~~~--~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~~~ffd~~~~--~~G~i~~r~s~D 862 (1321)
T 4f4c_A 789 --FLSQGHFW--ALMFLVLAAAQGICSFLMTFFMGIASESLTRDLRNKLFRNVLSQHIGFFDSPQN--ASGKISTRLATD 862 (1321)
T ss_dssp --TTTTHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCSSSTTSGGG--CHHHHHHHHHTH
T ss_pred --HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCC--CHHHHHHCCHHH
T ss_conf --56678999--999999999999999999999999999999999999988873499333216788--848888502505
Q ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCHHH
Q ss_conf 999999999996534576-------8999999999999416146999999999999999984365432047877610002
Q 001446 605 LEKLTTDLSGLVTGMVKP-------SVDILWFTWRMKALTGQRGVAILYAYMLLGLGFLRSVTPEFGDLTSREQQLEGTF 677 (1075)
Q Consensus 605 ~~~~~~~l~~~~~~~i~~-------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 677 (1075)
++.+...++..+..++.. ++.+++++|.++++. ++.+++.........+.......+.....+..
T Consensus 863 ~~~i~~~l~~~l~~~~~~~~~~i~~~~~~~~~~~~l~lv~--------l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 934 (1321)
T 4f4c_A 863 VPNLRTAIDFRFSTVITTLVSMVAGIGLAFFYGWQMALLI--------IAILPIVAFGQYLRGRRFTGKNVKSASEFADS 934 (1321)
T ss_dssp HHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH--------HHHHHHHHHHHHHHTSCCSSCSTTTSSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHEEEEHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999986537777022137868999999--------99888999999999999999999999998889
Q ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCH
Q ss_conf 56899998756876403990899999999999999999999999877555688887310246898899999986115301
Q 001446 678 RFMHERLRAHAESVAFFGGGAREKAMIESRFRELLEHSLLLLKKKWLFGILDDFVTKQLPHNVTWGLSLLYAMEHKGDRA 757 (1075)
Q Consensus 678 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 757 (1075)
.....+...+.++|++|+.++...+.+.+..+.......+..... +....+ ......+...++++++........
T Consensus 935 ~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~--~~~~~~~~~~~~~~~g~~lv~~~~ 1009 (1321)
T 4f4c_A 935 GKIAIEAIENVRTVQALAREDTFYENFCEKLDIPHKEAIKEAFIQ---GLSYGC--ASSVLYLLNTCAYRMGLALIITDP 1009 (1321)
T ss_dssp HHHHHHHHHTHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH--HTTHHHHHHHHHHHHHHHTTSSSS
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH--HHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 889999996279888614148899999999999999999999999---999999--999999999999987578875376
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 11115678999999999999998779999999999998721454489899998632999986667766767888889953
Q 001446 758 LVSTQGELAHALRFLASVVSQSFLAFGDILELHRKFVELSGGINRIFELEELLDAAQPGDDEISGSSQHKWNSTDYQDSI 837 (1075)
Q Consensus 758 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~Ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~I 837 (1075)
.. .+...... +...+.....+++.+......+.....+++|+.++.+.+++.+.. ..+++.||. .|.|
T Consensus 1010 ~~--~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~-----~~~~~~~~~---~g~I 1077 (1321)
T 4f4c_A 1010 PT--MQPMRVLR--VMYAITISTSTLGFATSYFPEYAKATFAGGIIFGMLRKISKIDSL-----SLAGEKKKL---YGKV 1077 (1321)
T ss_dssp CS--SCHHHHHH--HHHHHHTTTSSTTGGGGHHHHHHHHHHHHHHHHHHHHCCCSSCTT-----CCCSBCCCC---CCCE
T ss_pred CC--CCHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC-----CCCCCCCCC---CCEE
T ss_conf 54--21478999--999998778899999999999999999999899986076657776-----677878888---8818
Q ss_pred EEEEEEEECCCC--CCCCCCCCEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEECCCCCCCCC--CCCCCCEEE
Q ss_conf 881005637985--3323234236508986999849999588999999289999988276489877534--588672799
Q 001446 838 SFSKLDIITPSQ--KLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE--AGSGCGIFY 913 (1075)
Q Consensus 838 ~f~~Vsf~yp~~--~~vL~~iSl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~~~~G~I~idg~di~~~--~~~r~~i~~ 913 (1075)
+|+||+|.||+. .+||+|+||+|+|||+||||||||||||||+++|+|||+|.+|+|.+||+||+++ +.+|++|++
T Consensus 1078 ~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i~~ 1157 (1321)
T 4f4c_A 1078 IFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAI 1157 (1321)
T ss_dssp EEEEEEECCTTSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTTEEE
T ss_pred EEEEEEEECCCCCCCCCCCCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEHHHCCHHHHHHHEEE
T ss_conf 99987985799998821245169988989999989999819999999956863899789999998654999999854599
Q ss_pred ECCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHCCCCCCCC-CCCCC
Q ss_conf 70899889753656432899747899999663178865334454666899999976793123331003775556-64337
Q 001446 914 VPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANL-NWEDI 992 (1075)
Q Consensus 914 VpQdp~LF~GTIr~NL~yp~~~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~l~~~~~~~~~G~dt~~-~~g~~ 992 (1075)
|||||+||+||||+||.|+.+. ++..|++++++++.++++++++.+|+||||.+ +.|.+
T Consensus 1158 V~Qdp~LF~gTIreNI~~gld~--------------------~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~ 1217 (1321)
T 4f4c_A 1158 VSQEPTLFDCSIAENIIYGLDP--------------------SSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQ 1217 (1321)
T ss_dssp ECSSCCCCSEEHHHHHSSSSCT--------------------TTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCS
T ss_pred ECCCCEEECCCHHHHHHCCCCC--------------------CCCCHHHHHHHHHHHCCHHHHHCCCCCCCCEECCCCCC
T ss_conf 8789973272399997454999--------------------99999999999998298499971767899982388915
Q ss_pred CCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHH--CCCEEEEECCCCCCHHHCCCEEEEECCC
Q ss_conf 993688799999975407978676156889998899999999873--4966999437989530012138987388
Q 001446 993 LSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD--MGITFVTSSQRPALIPFHSLELRLIDGE 1065 (1075)
Q Consensus 993 LSgGQrQrlaiARAlLr~p~ILiLDEATSaLD~~~e~~i~~~~~~--~~~TvI~IaHRl~~i~~~~~~l~~~~g~ 1065 (1075)
||||||||||||||++|+|+|||||||||+||.++|+.|++.+++ ++||+|+||||++++...|+++++++|.
T Consensus 1218 LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IAHRLsTi~~aD~I~Vld~G~ 1292 (1321)
T 4f4c_A 1218 LSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIAHRLNTVMNADCIAVVSNGT 1292 (1321)
T ss_dssp SCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEECSSSSTTTTCSEEEEESSSS
T ss_pred CCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHCCEEEEEECCE
T ss_conf 699999999999999717998999681115789999999999999739998999606899999699999998989
No 2
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=1.00 E-value=1 Score=930.24 Aligned_cols=971 Identities=16% Similarity=0.191 Sum_probs=567.8
Q ss_pred HHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 12099999999799999999940999984189148899999999999999999999999999999999999999999999
Q 001446 11 KLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKYLGATVAVIL 90 (1075)
Q Consensus 11 ~l~~~~~~~e~~~r~~l~~~~~~~e~I~~~~~e~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (1075)
+...+.++..++..........++++|++|++|+.+.+++.+..+...+...+.. ...+....... .+. ....
T Consensus 234 ~~~~~~~~~~~~~~~~~~E~l~gi~~ikaf~~e~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-~~~---~~~~ 306 (1284)
T 3g5u_A 234 SFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKELERYNNNLEEAKRLGIKKA---ITANISMGAAF-LLI---YASY 306 (1284)
T ss_dssp HHHHHHHHHHHHHHHTTTCCCCCHHHHHTTCCCCSHHHHHHHHHHHHHHHHHTTT---HHHHHHHHHHH-HHH---HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH-HHH---HHHH
T ss_conf 9999999999999999999997879999846539999999999999999999999---99999999999-999---9999
Q ss_pred HHHHHHCCCCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 886441053156-8631568999999999999999999999999999999999999999999999861101225889888
Q 001446 91 IIEPFFAGNLKP-DTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHELMVISRELSIEDKSPQR 169 (1075)
Q Consensus 91 ~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~ 169 (1075)
++..|+++.+.. +..+.|.... .+ ..+......+..+...+..+.....+++|++++++.+++.+.....
T Consensus 307 ~~~~~~g~~lv~~g~~~~g~~~~--~~----~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~--- 377 (1284)
T 3g5u_A 307 ALAFWYGTSLVISKEYSIGQVLT--VF----FSVLIGAFSVGQASPNIEAFANARGAAYEVFKIIDNKPSIDSFSKS--- 377 (1284)
T ss_dssp HHHHHHHHHHHHHSSSCSSCHHH--HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCSSCCSS---
T ss_pred HHHHHHHHHHHHCCCCCHHHHHH--HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC---
T ss_conf 99999999999929988999999--99----9999999999999999999999999999999997289867766656---
Q ss_pred CCCCCCCCCCCCEEEEEEEEECCCC--CEEEEECEEEEECCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCCC--
Q ss_conf 8988888887619999589995999--701451018891899899995986069999999957999994279969968--
Q 001446 170 NGSRNYFSEANYIEFSGVKVVTPTG--NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-- 245 (1075)
Q Consensus 170 ~~~~~~~~~~~~i~~~~v~~~~~~~--~~~l~~~~l~i~~G~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~-- 245 (1075)
.....+..+.|+++||+|.||++ .++|+++||++++|++++|+||||||||||+++|+|+++|++|+|.++|.+
T Consensus 378 --~~~~~~~~g~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~ 455 (1284)
T 3g5u_A 378 --GHKPDNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIR 455 (1284)
T ss_dssp --CCCCTTCCCCEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGG
T ss_pred --CCCCCCCCCEEEEEEEEEECCCCCCCCCEECCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCEEHH
T ss_conf --777777777189999899769999871012545897599889998999997999999980788999738999999877
Q ss_pred ----CCCCCCEEEECCCCCCCCCCHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHCCCCCCCC---CCCCCCCH
Q ss_conf ----33346489990789998577889851799777656768999999999976990577219998566---78998793
Q 001446 246 ----SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI---NWGDELSL 318 (1075)
Q Consensus 246 ----~~~~~~i~~v~Q~p~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~---~~g~~LSg 318 (1075)
.+++++++||||+|+++++|++|||.++.+ ..+++++.++++.+++++++.++|.+.++ +.|.+|||
T Consensus 456 ~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~g~~------~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSg 529 (1284)
T 3g5u_A 456 TINVRYLREIIGVVSQEPVLFATTIAENIRYGRE------DVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSG 529 (1284)
T ss_dssp GSCHHHHHHHEEEECSSCCCCSSCHHHHHHHHCS------SCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCH
T ss_pred HCCHHHHHHHEEEECCCCCCCCCCHHHHHHCCCC------CCCHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCH
T ss_conf 5799999865489868875377669999745798------9999999999998296999974656334501478786599
Q ss_pred HHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHH--CCCEEEEEECCHHHHHHCCEEEEECCCCCEEEECCC
Q ss_conf 499999999987179979998579979999999999999981--397599991692168617949999189857783278
Q 001446 319 GEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVAFHDVVLSLDGEGEWRVHDKR 396 (1075)
Q Consensus 319 GqkqRi~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~--~~~t~i~vtH~~~~~~~~d~i~~l~~~~~~~~~~~~ 396 (1075)
|||||++||||++++|++++||||||+||+++++.+.+.++. .++|+|+||||++.+..+|+|++|+++ ..++.+.
T Consensus 530 Gq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~i~~~d~i~vl~~G--~i~~~g~ 607 (1284)
T 3g5u_A 530 GQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGG--VIVEQGN 607 (1284)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHHTTSEEEEECSCHHHHTTCSEEEECSSS--CCCCEEC
T ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCEEEEEECC--EEEEECC
T ss_conf 99999999999952999899979877779999999999999973999899994077899749989999899--9999788
Q ss_pred CCCCCCCCCCCCC-CCCCCCCCCHH--HHH--HHHHHH---HCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 8863222223322-22565442113--456--778664---211233437963023588875208877899999876554
Q 001446 397 DGSSVVTKSGINM-IKSSETDRQSD--AMA--VEQAFV---TAKKDSAFSNPKAQSYVSEVIAASPIADHNVPLPVFPQL 468 (1075)
Q Consensus 397 ~~~~~~~~~~~~~-~~~~~~~~~~~--~~~--~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (1075)
+.+++.....+.. ........... ... ...... ........ .......................... ...
T Consensus 608 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 685 (1284)
T 3g5u_A 608 HDELMREKGIYFKLVMTQTAGNEIELGNEACKSKDEIDNLDMSSKDSGS-SLIRRRSTRKSICGPHDQDRKLSTKE-ALD 685 (1284)
T ss_dssp HHHHHHTTSHHHHHHHHTC-----------------------------------------------------------CC
T ss_pred HHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCHHH-HHH
T ss_conf 9999867877999999743002211133333322222344333333332-00034543334456422332110245-553
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHH----HHHHHHHHHHHHHHHCCHHHHHHHHCCHHHHH--HHHHHHH
Q ss_conf 57887512568767786612311145699999999----99999997777654211689999833997899--9999999
Q 001446 469 KSAPRILPLRVADMFKVLVPTVFDKQGAQLLAVAF----LVVSRTWISDRIASLNGTTVKYVLEQDKASFV--RLIGVSV 542 (1075)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 542 (1075)
........+++..+.+..++.+.......+..... ..+...++..+........... ...++ .++++.+
T Consensus 686 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-----~~~~~~~~~~~l~i 760 (1284)
T 3g5u_A 686 EDVPPASFWRILKLNSTEWPYFVVGIFCAIINGGLQPAFSVIFSKVVGVFTNGGPPETQRQ-----NSNLFSLLFLILGI 760 (1284)
T ss_dssp CCCSCCCTTHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHH-----HHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH-----HHHHHHHHHHHHHH
T ss_conf 1366258999999845157999999999999999999999999999999855685033677-----99999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999969999999999997625886177715899999974306888999999999996534576
Q 001446 543 LQSAASSFIAPSIRHLTARLALGWRIRMTQHLLKSYLRKNSFYKVFNMSSKSIDADQRITHDLEKLTTDLSGLVTGMVKP 622 (1075)
Q Consensus 543 ~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~l~~~~~~~~~~~~~~~~~~~~rl~~D~~~~~~~l~~~~~~~i~~ 622 (1075)
+..+...+..+...+...++..+.|..++.++++. +..||+.. ....+++.+|+++|++.+...+...+..++..
T Consensus 761 ~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~---~~~ff~~~--~~~~G~l~~rl~~D~~~i~~~~~~~l~~~~~~ 835 (1284)
T 3g5u_A 761 ISFITFFLQGFTFGKAGEILTKRLRYMVFKSMLRQ---DVSWFDDP--KNTTGALTTRLANDAAQVKGATGSRLAVIFQN 835 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CSHHHHSC--SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---CHHHHCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999839---98887578--99889999999999999999999999999999
Q ss_pred HHHH-------HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 8999-------999999999416146999999999999999984365432047877610002568999987568764039
Q 001446 623 SVDI-------LWFTWRMKALTGQRGVAILYAYMLLGLGFLRSVTPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFFG 695 (1075)
Q Consensus 623 ~~~~-------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 695 (1075)
++.+ ++++|+++++. ++.+++.........+.......+.+...........+...+.++|++|+
T Consensus 836 ~~~~~~~~i~~~~~~~~l~lv~--------l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~ti~a~~ 907 (1284)
T 3g5u_A 836 IANLGTGIIISLIYGWQLTLLL--------LAIVPIIAIAGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSLT 907 (1284)
T ss_dssp HHHHHHHHHHHHSSCSSSHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTTTTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 9999999999999969999999--------99999999999999999999999999999999999999998899999846
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 90899999999999999999999999877555688887310246898899999986115301111156789999999999
Q 001446 696 GGAREKAMIESRFRELLEHSLLLLKKKWLFGILDDFVTKQLPHNVTWGLSLLYAMEHKGDRALVSTQGELAHALRFLASV 775 (1075)
Q Consensus 696 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 775 (1075)
.++.....+........... .+..++.+....+ .+....+.+.++++++........ .+.+.+.... ..
T Consensus 908 ~e~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~lv~~~~--~~~~~~~~~~----~~ 976 (1284)
T 3g5u_A 908 REQKFETMYAQSLQIPYRNA---MKKAHVFGITFSF--TQAMMYFSYAAAFRFGAYLVTQQL--MTFENVLLVF----SA 976 (1284)
T ss_dssp SHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHCCCSSSC--SCSTTHHHHH----HH
T ss_pred CHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHCC--CCHHHHHHHH----HH
T ss_conf 59999999999999999999---9999999999999--999999999999999999999098--0699999999----99
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCC--CCCC
Q ss_conf 99998779999999999998721454489899998632999986667766767888889953881005637985--3323
Q 001446 776 VSQSFLAFGDILELHRKFVELSGGINRIFELEELLDAAQPGDDEISGSSQHKWNSTDYQDSISFSKLDIITPSQ--KLLA 853 (1075)
Q Consensus 776 ~~~~~~~~~~~~~~~~~~~~~~~s~~Ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~~Vsf~yp~~--~~vL 853 (1075)
+.....+++.+......+.....+++|+.++.+..++.+... ....++++ ..|.|+|+||+|.||+. .++|
T Consensus 977 ~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~----~~~~~~~~---~~g~i~~~~v~~~y~~~~~~~~l 1049 (1284)
T 3g5u_A 977 IVFGAMAVGQVSSFAPDYAKATVSASHIIRIIEKTPEIDSYS----TQGLKPNM---LEGNVQFSGVVFNYPTRPSIPVL 1049 (1284)
T ss_dssp HHHHHHHHHHHTSSSCCSTHHHHHHHHHHHHHHSCCSSSSCC----SSCCCTTT---TSCCEEEEEEEBCCSCGGGCCSB
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC----CCCCCCCC---CCCCEEEEEEEEECCCCCCCEEE
T ss_conf 999999999999999999999999999999983887666655----56654567---77857999989977999987002
Q ss_pred CCCCEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEECCCCCCCCC--CCCCCCEEEECCCCCCCCCCHHHHHCC
Q ss_conf 234236508986999849999588999999289999988276489877534--588672799708998897536564328
Q 001446 854 RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE--AGSGCGIFYVPQRPYTCLGTLRDQIIY 931 (1075)
Q Consensus 854 ~~iSl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~~~~G~I~idg~di~~~--~~~r~~i~~VpQdp~LF~GTIr~NL~y 931 (1075)
+|+||+|+|||++|||||||||||||+++|+|+|+|.+|+|.+||.|++.. ..+|.++++|||||.+|++||||||.+
T Consensus 1050 ~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~ 1129 (1284)
T 3g5u_A 1050 QGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAY 1129 (1284)
T ss_dssp SSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTTSCEEEESSCCCCSSBHHHHHTC
T ss_pred CCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCEEEECCCCCCCCCCHHHHHHC
T ss_conf 03059976998899988999978999999946867899779899998000789999702689877874066669999746
Q ss_pred CCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHCCCCCCCC-CCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 99747899999663178865334454666899999976793123331003775556-64337993688799999975407
Q 001446 932 PLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANL-NWEDILSLGEQQRLGMARLFFHK 1010 (1075)
Q Consensus 932 p~~~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~l~~~~~~~~~G~dt~~-~~g~~LSgGQrQrlaiARAlLr~ 1010 (1075)
+... ....+++++++++.+++..+++.+|+||||.+ +.|.+||||||||+|||||++++
T Consensus 1130 ~~~~--------------------~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~~ 1189 (1284)
T 3g5u_A 1130 GDNS--------------------RVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQ 1189 (1284)
T ss_dssp CCSS--------------------CCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHHC
T ss_pred CCCC--------------------CCCCHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf 6877--------------------89999999999998395999972704245611788893389999999999999749
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHH--CCCEEEEECCCCCCHHHCCCEEEEECCC
Q ss_conf 978676156889998899999999873--4966999437989530012138987388
Q 001446 1011 PKFGILDECTNATSVDVEEQLYRLAKD--MGITFVTSSQRPALIPFHSLELRLIDGE 1065 (1075)
Q Consensus 1011 p~ILiLDEATSaLD~~~e~~i~~~~~~--~~~TvI~IaHRl~~i~~~~~~l~~~~g~ 1065 (1075)
|+|||||||||+||.++++.+++.+++ .++|+|+|+||++++...|+++++.+|.
T Consensus 1190 p~iLiLDEpTs~lD~~~~~~i~~~l~~~~~~~tvi~isH~l~~i~~~dri~vl~~G~ 1246 (1284)
T 3g5u_A 1190 PHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGK 1246 (1284)
T ss_dssp CSSEEEESCSSSCCHHHHHHHHHHHHHHSSSSCEEEECSCTTGGGSCSEEEEEETBE
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCEEEEEECCE
T ss_conf 999998687555799999999999998679998999955879998099899998998
No 3
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=1.00 E-value=1 Score=570.72 Aligned_cols=470 Identities=16% Similarity=0.208 Sum_probs=316.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHH--
Q ss_conf 999999999999999999999999969999999999997625886177715899999974306888999999999996--
Q 001446 539 GVSVLQSAASSFIAPSIRHLTARLALGWRIRMTQHLLKSYLRKNSFYKVFNMSSKSIDADQRITHDLEKLTTDLSGLV-- 616 (1075)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~l~~~~~~~~~~~~~~~~~~~~rl~~D~~~~~~~l~~~~-- 616 (1075)
+++++..++.++..+++.+.+.+...+.|..+++++++. +..||+. ...+++.+|+++|++.+...+...+
T Consensus 144 ~l~i~~~~~~~~~~~~~~~~~~r~~~~lR~~~~~~ll~~---~~~~fd~----~~~G~l~sr~~~D~~~i~~~~~~~l~~ 216 (1321)
T 4f4c_A 144 AMTVGMWAAGQITVTCYLYVAEQMNNRLRREFVKSILRQ---EISWFDT----NHSGTLATKLFDNLERVKEGTGDKIGM 216 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS---CHHHHHH----TCCTTHHHHHHHHHHHHHHTSSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---CHHHHCC----CCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999999999999999999999788---9899879----984899999999999999999999999
Q ss_pred -----HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCHHHHHHHHHHHHHHHHH
Q ss_conf -----534576899999999999941614699999999999999998436543204787761000256899998756876
Q 001446 617 -----TGMVKPSVDILWFTWRMKALTGQRGVAILYAYMLLGLGFLRSVTPEFGDLTSREQQLEGTFRFMHERLRAHAESV 691 (1075)
Q Consensus 617 -----~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 691 (1075)
..++..++.+++++|+++++.... +.++.++. ..+.+.......+.+...+......++...++++|
T Consensus 217 ~~~~~~~~i~~~i~~~~~~~~l~lv~l~~----~p~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~i 288 (1321)
T 4f4c_A 217 AFQYLSQFITGFIVAFTHSWQLTLVMLAV----TPIQALCG----FAIAKSMSTFAIRETLRYAKAGKVVEETISSIRTV 288 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHHHHHTT----HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999989999999999----99999999----99999999999999999999999999999839999
Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 40399089999999999999999999999987755568888731024689889999998611530111115678999999
Q 001446 692 AFFGGGAREKAMIESRFRELLEHSLLLLKKKWLFGILDDFVTKQLPHNVTWGLSLLYAMEHKGDRALVSTQGELAHALRF 771 (1075)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~ 771 (1075)
+.|++++.+.+.+.+..++..+...+.... .+..... ..+...+.++++++++........ .+.|.+...
T Consensus 289 k~~~~e~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~--~~~~~~~~~~~~~~~g~~~v~~g~--lt~g~~~~~--- 358 (1321)
T 4f4c_A 289 VSLNGLRYELERYSTAVEEAKKAGVLKGLF---LGISFGA--MQASNFISFALAFYIGVGWVHDGS--LNFGDMLTT--- 358 (1321)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH--HHHHHHHHHHHHHHHHHHHHTTTS--SCHHHHHHH---
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH--HHHHHHHHHHHHHHHHHHHHHCCC--CCHHHHHHH---
T ss_conf 982142999999999999999999999999---9999999--999999999999999999999599--869999999---
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCC--C
Q ss_conf 99999999877999999999999872145448989999863299998666776676788888995388100563798--5
Q 001446 772 LASVVSQSFLAFGDILELHRKFVELSGGINRIFELEELLDAAQPGDDEISGSSQHKWNSTDYQDSISFSKLDIITPS--Q 849 (1075)
Q Consensus 772 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~Ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~~Vsf~yp~--~ 849 (1075)
..++.....++..+......+.+...+++|+.++++..++.+... ..+ + +.....|.|+|+||+|.||+ +
T Consensus 359 -~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~--~~~--~---~~~~~~g~I~~~nvsF~Y~~~~~ 430 (1321)
T 4f4c_A 359 -FSSVMMGSMALGLAGPQLAVLGTAQGAASGIYEVLDRKPVIDSSS--KAG--R---KDMKIKGDITVENVHFTYPSRPD 430 (1321)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCCSSCSS--SCC--C---CCCCCCCCEEEEEEEECCSSSTT
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC--CCC--C---CCCCCCCCEEEEEEEEECCCCCC
T ss_conf -999999999999899999999999999999999971785345666--556--5---67788876799985540799998
Q ss_pred CCCCCCCCEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEECCCCCCCCC--CCCCCCEEEECCCCCCCCCCHHH
Q ss_conf 3323234236508986999849999588999999289999988276489877534--58867279970899889753656
Q 001446 850 KLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE--AGSGCGIFYVPQRPYTCLGTLRD 927 (1075)
Q Consensus 850 ~~vL~~iSl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~~~~G~I~idg~di~~~--~~~r~~i~~VpQdp~LF~GTIr~ 927 (1075)
.++|+|+||+|+|||++|||||||||||||+++|+|+|+|.+|+|.+||+||+++ ..+|.+|+||||||+||+|||||
T Consensus 431 ~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~e 510 (1321)
T 4f4c_A 431 VPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEE 510 (1321)
T ss_dssp SCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSEEHHH
T ss_pred CCEEECEEEEECCCCEEEEEECCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCHHCCHHHHHHCCCCCCCCCEEECCCHHH
T ss_conf 74333318862288278998058985778888754565164486157996501125999850466658753320786167
Q ss_pred HHCCCCC--HHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHCCCCCCCC-CCCCCCCHHHHHHHHHH
Q ss_conf 4328997--47899999663178865334454666899999976793123331003775556-64337993688799999
Q 001446 928 QIIYPLS--REEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANL-NWEDILSLGEQQRLGMA 1004 (1075)
Q Consensus 928 NL~yp~~--~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~l~~~~~~~~~G~dt~~-~~g~~LSgGQrQrlaiA 1004 (1075)
||.|+.+ .+++.++|| +.+++.++++.+|+|+||.+ +.|.+||||||||||||
T Consensus 511 NI~~g~~~~~~~~v~~a~------------------------~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiA 566 (1321)
T 4f4c_A 511 NISLGKEGITREEMVAAC------------------------KMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIA 566 (1321)
T ss_dssp HHHTTCTTCCHHHHHHHH------------------------HHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHH
T ss_pred HHHHHCCCCHHHHHHHHH------------------------HHCCCHHHHHCCCCCCCCEECCCCCCCCHHHHHHHHHH
T ss_conf 886415522099999999------------------------87565468870888886075589887777787999999
Q ss_pred HHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHH--CCCEEEEECCCCCCHHHCCCEEEEECCC
Q ss_conf 975407978676156889998899999999873--4966999437989530012138987388
Q 001446 1005 RLFFHKPKFGILDECTNATSVDVEEQLYRLAKD--MGITFVTSSQRPALIPFHSLELRLIDGE 1065 (1075)
Q Consensus 1005 RAlLr~p~ILiLDEATSaLD~~~e~~i~~~~~~--~~~TvI~IaHRl~~i~~~~~~l~~~~g~ 1065 (1075)
||++++|+|+||||||||||+++|..+++.+.. +++|+|+||||+++++..|+++++++|.
T Consensus 567 RAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiiaHrls~i~~aD~Iivl~~G~ 629 (1321)
T 4f4c_A 567 RALVRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHRLSTIRNADLIISCKNGQ 629 (1321)
T ss_dssp HHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEECSCTTTTTTCSEEEEEETTE
T ss_pred HHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHCCEEEEEECCE
T ss_conf 987259998998455446887899999999999847988999736387898689899963996
No 4
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=1.00 E-value=1 Score=517.97 Aligned_cols=468 Identities=15% Similarity=0.180 Sum_probs=295.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999969999999999997625886177715899999974306888999999999996534576
Q 001446 543 LQSAASSFIAPSIRHLTARLALGWRIRMTQHLLKSYLRKNSFYKVFNMSSKSIDADQRITHDLEKLTTDLSGLVTGMVKP 622 (1075)
Q Consensus 543 ~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~l~~~~~~~~~~~~~~~~~~~~rl~~D~~~~~~~l~~~~~~~i~~ 622 (1075)
+..++..+..+...+...+...++|..+++++++. +..||+. ...+++.+|+++|++.+...+...+..++..
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~---~~~~f~~----~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~ 192 (1284)
T 3g5u_A 120 GVLIVAYIQVSFWCLAAGRQIHKIRQKFFHAIMNQ---EIGWFDV----HDVGELNTRLTDDVSKINEGIGDKIGMFFQA 192 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS---TTHHHHS----CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---CHHHHCC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999869---9899756----8877899999988999999999999999999
Q ss_pred HHHH-------HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 8999-------999999999416146999999999999999984365432047877610002568999987568764039
Q 001446 623 SVDI-------LWFTWRMKALTGQRGVAILYAYMLLGLGFLRSVTPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFFG 695 (1075)
Q Consensus 623 ~~~~-------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 695 (1075)
++++ ++++|+++++. ++..++.......+.+.......+.+...+......++...++++|++|+
T Consensus 193 ~~~~i~~~~~~~~~~~~l~l~~--------l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ikaf~ 264 (1284)
T 3g5u_A 193 MATFFGGFIIGFTRGWKLTLVI--------LAISPVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFG 264 (1284)
T ss_dssp HHHHHHHHHHHHHTTSSSHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHC
T ss_conf 9999999999999989999999--------99999999999999999999999999999999999999997879999846
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 90899999999999999999999999877555688887310246898899999986115301111156789999999999
Q 001446 696 GGAREKAMIESRFRELLEHSLLLLKKKWLFGILDDFVTKQLPHNVTWGLSLLYAMEHKGDRALVSTQGELAHALRFLASV 775 (1075)
Q Consensus 696 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 775 (1075)
+++.+.+.+.+..++..+...+......+.... ..+...+.++++++++........ .+.|.+..... .
T Consensus 265 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~g~~lv~~g~--~~~g~~~~~~~----~ 333 (1284)
T 3g5u_A 265 GQKKELERYNNNLEEAKRLGIKKAITANISMGA-----AFLLIYASYALAFWYGTSLVISKE--YSIGQVLTVFF----S 333 (1284)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHTTTHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHSS--SCSSCHHHHHH----H
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHCCC--CCHHHHHHHHH----H
T ss_conf 539999999999999999999999999999999-----999999999999999999999299--88999999999----9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCC--CCCC
Q ss_conf 99998779999999999998721454489899998632999986667766767888889953881005637985--3323
Q 001446 776 VSQSFLAFGDILELHRKFVELSGGINRIFELEELLDAAQPGDDEISGSSQHKWNSTDYQDSISFSKLDIITPSQ--KLLA 853 (1075)
Q Consensus 776 ~~~~~~~~~~~~~~~~~~~~~~~s~~Ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~~Vsf~yp~~--~~vL 853 (1075)
+.....++.++......+.....+++|+.++.+.+++.+... .....+ ....|.|+|+||+|.||+. .++|
T Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~--~~~~~~-----~~~~g~i~~~~v~~~y~~~~~~~vL 406 (1284)
T 3g5u_A 334 VLIGAFSVGQASPNIEAFANARGAAYEVFKIIDNKPSIDSFS--KSGHKP-----DNIQGNLEFKNIHFSYPSRKEVQIL 406 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCSSCC--SSCCCC-----TTCCCCEEEEEEEECCSSTTSCCSE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC--CCCCCC-----CCCCCEEEEEEEEEECCCCCCCCCE
T ss_conf 999999999999999999999999999999972898677666--567777-----7777718999989976999987101
Q ss_pred CCCCEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEECCCCCCCCC--CCCCCCEEEECCCCCCCCCCHHHHHCC
Q ss_conf 234236508986999849999588999999289999988276489877534--588672799708998897536564328
Q 001446 854 RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE--AGSGCGIFYVPQRPYTCLGTLRDQIIY 931 (1075)
Q Consensus 854 ~~iSl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~~~~G~I~idg~di~~~--~~~r~~i~~VpQdp~LF~GTIr~NL~y 931 (1075)
+|+||+|+|||++|||||||||||||+++|.|+|+|.+|+|.+||.|++.+ ..+|.++++|||||+||+|||||||.+
T Consensus 407 ~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~ 486 (1284)
T 3g5u_A 407 KGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRY 486 (1284)
T ss_dssp EEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSSCHHHHHHH
T ss_pred ECCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCEEHHHCCHHHHHHHEEEECCCCCCCCCCHHHHHHC
T ss_conf 25458975998899989999979999999807889997389999998775799999865489868875377669999745
Q ss_pred CCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHCCCCCCCC-CCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 99747899999663178865334454666899999976793123331003775556-64337993688799999975407
Q 001446 932 PLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANL-NWEDILSLGEQQRLGMARLFFHK 1010 (1075)
Q Consensus 932 p~~~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~l~~~~~~~~~G~dt~~-~~g~~LSgGQrQrlaiARAlLr~ 1010 (1075)
+... ..+++++++++.+++.++++.+|+|+||.+ +.|.+||||||||+|||||++++
T Consensus 487 g~~~----------------------~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~ 544 (1284)
T 3g5u_A 487 GRED----------------------VTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRN 544 (1284)
T ss_dssp HCSS----------------------CCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHC
T ss_pred CCCC----------------------CCHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf 7989----------------------999999999998296999974656334501478786599999999999999529
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHH--CCCEEEEECCCCCCHHHCCCEEEEECCC
Q ss_conf 978676156889998899999999873--4966999437989530012138987388
Q 001446 1011 PKFGILDECTNATSVDVEEQLYRLAKD--MGITFVTSSQRPALIPFHSLELRLIDGE 1065 (1075)
Q Consensus 1011 p~ILiLDEATSaLD~~~e~~i~~~~~~--~~~TvI~IaHRl~~i~~~~~~l~~~~g~ 1065 (1075)
|+|||||||||+||+++++.+++.++. .++|+|+|+||++++...|+++++++|.
T Consensus 545 p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~i~~~d~i~vl~~G~ 601 (1284)
T 3g5u_A 545 PKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGV 601 (1284)
T ss_dssp CSEEEEESTTCSSCHHHHHHHHHHHHHHHTTSEEEEECSCHHHHTTCSEEEECSSSC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCEEEEEECCE
T ss_conf 998999798777799999999999999739998999940778997499899998999
No 5
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=1.00 E-value=1 Score=502.18 Aligned_cols=462 Identities=18% Similarity=0.199 Sum_probs=301.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH----
Q ss_conf 9999999999999999969999999999997625886177715899999974306888999999999996534576----
Q 001446 547 ASSFIAPSIRHLTARLALGWRIRMTQHLLKSYLRKNSFYKVFNMSSKSIDADQRITHDLEKLTTDLSGLVTGMVKP---- 622 (1075)
Q Consensus 547 ~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~l~~~~~~~~~~~~~~~~~~~~rl~~D~~~~~~~l~~~~~~~i~~---- 622 (1075)
+..+..+.......+...++|..+++++++. +..||+- ...++..+|+++|++.+...+...+..++..
T Consensus 93 ~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~---~~~~~~~----~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~ 165 (598)
T 3qf4_B 93 LFWLQGKIMLTLSQDVVFRLRKELFEKLQRV---PVGFFDR----TPHGDIISRVINDVDNINNVLGNSIIQFFSGIVTL 165 (598)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS---CTHHHHH----SCHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---CHHHHCC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999999999999999779---9999768----88899999999999999999999999999999999
Q ss_pred ---HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCHH
Q ss_conf ---89999999999994161469999999999999999843654320478776100025689999875687640399089
Q 001446 623 ---SVDILWFTWRMKALTGQRGVAILYAYMLLGLGFLRSVTPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFFGGGAR 699 (1075)
Q Consensus 623 ---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 699 (1075)
++.+++++|.++++.... .++.......+.+.......+.+...+.......+...+.++|+.|++++.
T Consensus 166 i~~~~~l~~~~~~l~l~~l~~--------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~ 237 (598)
T 3qf4_B 166 AGAVIMMFRVNVILSLVTLSI--------VPLTVLITQIVSSQTRKYFYENQRVLGQLNGIIEEDISGLTVIKLFTREEK 237 (598)
T ss_dssp HHHHHHHHHHCHHHHHHHTTH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCHHH
T ss_conf 999999999989999999999--------999999999999999999999999999999999999737999997487099
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999998775556888873102468988999999861153011111567899999999999999
Q 001446 700 EKAMIESRFRELLEHSLLLLKKKWLFGILDDFVTKQLPHNVTWGLSLLYAMEHKGDRALVSTQGELAHALRFLASVVSQS 779 (1075)
Q Consensus 700 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 779 (1075)
+.+.+.+...+..+...+......+......++ ..+..+++++++....... ..+.|.+... ..+....
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~g~~l~~~g--~ls~g~~~~~----~~~~~~~ 306 (598)
T 3qf4_B 238 EMEKFDRVNESLRKVGTKAQIFSGVLPPLMNMV-----NNLGFALISGFGGWLALKD--IITVGTIATF----IGYSRQF 306 (598)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHH-----HHHHHHHHHHHHHHHGGGT--SSCHHHHHHH----HTTTTSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHCC--CCCHHHHHHH----HHHHHHH
T ss_conf 999999999999999999999999999999999-----9999999999999999859--9789999999----9999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCEE
Q ss_conf 87799999999999987214544898999986329999866677667678888899538810056379853323234236
Q 001446 780 FLAFGDILELHRKFVELSGGINRIFELEELLDAAQPGDDEISGSSQHKWNSTDYQDSISFSKLDIITPSQKLLARQLTFE 859 (1075)
Q Consensus 780 ~~~~~~~~~~~~~~~~~~~s~~Ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~~Vsf~yp~~~~vL~~iSl~ 859 (1075)
..++..+......+.+...+++|+.++.+.+++.+. . ..++.++ ..+.|+|+||+|.|++..++|+|+||+
T Consensus 307 ~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~-----~-~~~~~~~---~~~~i~~~~v~~~y~~~~~~l~~isl~ 377 (598)
T 3qf4_B 307 TRPLNELSNQFNMIQMALASAERIFEILDLEEEKDD-----P-DAVELRE---VRGEIEFKNVWFSYDKKKPVLKDITFH 377 (598)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCC-----S-SCCCCCS---CCCCEEEEEEECCSSSSSCSCCSEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC-----C-CCCCCCC---CCCEEEEEEEEEECCCCCCCCCCEEEE
T ss_conf 999999999999999999999999999768877777-----7-7777777---777189999899779998601222799
Q ss_pred ECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEECCCCCCCCCC--CCCCCEEEECCCCCCCCCCHHHHHCCCCCHHH
Q ss_conf 5089869998499995889999992899999882764898775345--88672799708998897536564328997478
Q 001446 860 IVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA--GSGCGIFYVPQRPYTCLGTLRDQIIYPLSREE 937 (1075)
Q Consensus 860 I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~~~~G~I~idg~di~~~~--~~r~~i~~VpQdp~LF~GTIr~NL~yp~~~~~ 937 (1075)
|++||++|||||||||||||+++|.|+|+|++|+|.+||.|+++.+ .+|.++++|||+|.+|++|++||+.++...
T Consensus 378 i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~-- 455 (598)
T 3qf4_B 378 IKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNPG-- 455 (598)
T ss_dssp CCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECTTCCCCSSBHHHHHHSSSTT--
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCEEHHHCCHHHHHHCEEEEECCCCCCCCCHHHHHHCCCCC--
T ss_conf 869988999899999699999999458579980899999983018899998410899079823246399997447999--
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHCCCCCCCC-CCCCCCCHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 99999663178865334454666899999976793123331003775556-64337993688799999975407978676
Q 001446 938 AELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANL-NWEDILSLGEQQRLGMARLFFHKPKFGIL 1016 (1075)
Q Consensus 938 ~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~l~~~~~~~~~G~dt~~-~~g~~LSgGQrQrlaiARAlLr~p~ILiL 1016 (1075)
..++++.++++.+++.++++..|+|+|+.. +.|.+||||||||+|||||++++|+|++|
T Consensus 456 --------------------~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p~illl 515 (598)
T 3qf4_B 456 --------------------ATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILIL 515 (598)
T ss_dssp --------------------CCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTCCSEEEE
T ss_pred --------------------CCHHHHHHHHHHHCCHHHHHHCCCCCCCHHCCCCCCCCHHHHHHHHHHHHHHCCCCEEEE
T ss_conf --------------------999999999999697888974645323642278898799999999999999649999999
Q ss_pred ECCCCCCCHHHHHHHHHHHHH--CCCEEEEECCCCCCHHHCCCEEEEECCC
Q ss_conf 156889998899999999873--4966999437989530012138987388
Q 001446 1017 DECTNATSVDVEEQLYRLAKD--MGITFVTSSQRPALIPFHSLELRLIDGE 1065 (1075)
Q Consensus 1017 DEATSaLD~~~e~~i~~~~~~--~~~TvI~IaHRl~~i~~~~~~l~~~~g~ 1065 (1075)
|||||+||+++++.+++.+++ +++|+|+|+||++++...|+++.+++|.
T Consensus 516 DEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~ 566 (598)
T 3qf4_B 516 DEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGE 566 (598)
T ss_dssp CCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTTHHHHCSEEEEECSSS
T ss_pred ECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCEEEEEECCE
T ss_conf 897667999999999999999808998999942778997199899998999
No 6
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=1.00 E-value=1 Score=501.24 Aligned_cols=462 Identities=16% Similarity=0.147 Sum_probs=301.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q ss_conf 9999999999999999699999999999976258861777158999999743068889999999999965345768999-
Q 001446 548 SSFIAPSIRHLTARLALGWRIRMTQHLLKSYLRKNSFYKVFNMSSKSIDADQRITHDLEKLTTDLSGLVTGMVKPSVDI- 626 (1075)
Q Consensus 548 ~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~l~~~~~~~~~~~~~~~~~~~~rl~~D~~~~~~~l~~~~~~~i~~~~~~- 626 (1075)
..+..+...+...+...++|..+++++++.. ..|++ ....++..+|+++|++.+...+...+..++..++.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~---~~~~~----~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i 152 (587)
T 3qf4_A 80 GIGCTVFASYASQNFGADLRRDLFRKVLSFS---ISNVN----RFHTSSLITRLTNDVTQLQNLVMMLLRIVVRAPLLFV 152 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---HHHHH----HSCHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---HHHHC----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999999999999997889---79976----5888999999999999999999999999999999999
Q ss_pred ------HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCHHH
Q ss_conf ------99999999941614699999999999999998436543204787761000256899998756876403990899
Q 001446 627 ------LWFTWRMKALTGQRGVAILYAYMLLGLGFLRSVTPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFFGGGARE 700 (1075)
Q Consensus 627 ------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 700 (1075)
++++|.++++. +...+ +.......+.+.......+.+...+.......+...++++|+.|++++.+
T Consensus 153 ~~~~~l~~~~~~l~l~~-------l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~ 224 (587)
T 3qf4_A 153 GGIVMAVSINVKLSSVL-------IFLIP-PIVLLFVWLTKKGNPLFRKIQESTDEVNRVVRENLLGVRVVRAFRREEYE 224 (587)
T ss_dssp HHHHHHHHHCTTTTHHH-------HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHHH-------HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
T ss_conf 99999999989999999-------99999-99999999999999999999999999999999998559999986214999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999987755568888731024689889999998611530111115678999999999999998
Q 001446 701 KAMIESRFRELLEHSLLLLKKKWLFGILDDFVTKQLPHNVTWGLSLLYAMEHKGDRALVSTQGELAHALRFLASVVSQSF 780 (1075)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 780 (1075)
.+.+.+..++..+...+..+...+......++ ..+...++++++....... ..+.|.+... ..+.....
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~vl~~g~~~v~~g--~lt~g~~~~~----~~~~~~~~ 293 (587)
T 3qf4_A 225 NENFRKANESLRRSIISAFSLIVFALPLFIFI-----VNMGMIAVLWFGGVLVRNN--QMEIGSIMAY----TNYLMQIM 293 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHTT--SSCHHHHHHH----HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHCC--CCCHHHHHHH----HHHHHHHH
T ss_conf 99999999999999999999999999999999-----9999999999999999849--9389999999----99999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCC-CCCCCCCCCEE
Q ss_conf 77999999999999872145448989999863299998666776676788888995388100563798-53323234236
Q 001446 781 LAFGDILELHRKFVELSGGINRIFELEELLDAAQPGDDEISGSSQHKWNSTDYQDSISFSKLDIITPS-QKLLARQLTFE 859 (1075)
Q Consensus 781 ~~~~~~~~~~~~~~~~~~s~~Ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~~Vsf~yp~-~~~vL~~iSl~ 859 (1075)
.++..+......+.+...+++|+.++.+.+++.++.. .+...+ ...+.|+|+||+|.||+ .+++|+|+||+
T Consensus 294 ~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~------~~~~~~--~~~~~i~~~~v~~~y~~~~~~~l~~isl~ 365 (587)
T 3qf4_A 294 FSLMMIGNILNFIVRASASAKRVLEVLNEKPAIEEAD------NALALP--NVEGSVSFENVEFRYFENTDPVLSGVNFS 365 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSCCCCT------TCBCCS--CCCCCEEEEEEEECSSSSSCCSEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC------CCCCCC--CCCCCEEEEEEEEECCCCCCCCEECEEEE
T ss_conf 9999999999999999999999999976897657887------765668--88880799788998489997642111799
Q ss_pred ECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEECCCCCCCCCC--CCCCCEEEECCCCCCCCCCHHHHHCCCCCHHH
Q ss_conf 5089869998499995889999992899999882764898775345--88672799708998897536564328997478
Q 001446 860 IVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA--GSGCGIFYVPQRPYTCLGTLRDQIIYPLSREE 937 (1075)
Q Consensus 860 I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~~~~G~I~idg~di~~~~--~~r~~i~~VpQdp~LF~GTIr~NL~yp~~~~~ 937 (1075)
|++||++|||||||||||||+++|.|+|+|++|+|.+||.|+++.+ .+|.++++|||+|.+|++|+||||.++...
T Consensus 366 i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~-- 443 (587)
T 3qf4_A 366 VKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGRED-- 443 (587)
T ss_dssp ECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHHEEEECSSCCCCSEEHHHHHTTTCSS--
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHHEEEECCCCCCCCCCHHHHHHCCCCC--
T ss_conf 869988999899999799999999278669986798999983407899998413897789867675599998524889--
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHCCCCCCCC-CCCCCCCHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 99999663178865334454666899999976793123331003775556-64337993688799999975407978676
Q 001446 938 AELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANL-NWEDILSLGEQQRLGMARLFFHKPKFGIL 1016 (1075)
Q Consensus 938 ~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~l~~~~~~~~~G~dt~~-~~g~~LSgGQrQrlaiARAlLr~p~ILiL 1016 (1075)
..++++.++++.+++.++++.+|+|+|+.. +.|.+||||||||+|||||++++|+|++|
T Consensus 444 --------------------~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~~p~illl 503 (587)
T 3qf4_A 444 --------------------ATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLIL 503 (587)
T ss_dssp --------------------CCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHTCCSEEEE
T ss_pred --------------------CCHHHHHHHHHHHCCHHHHHHCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCEEEE
T ss_conf --------------------999999999999684999975653121275189899299999999999999729999999
Q ss_pred ECCCCCCCHHHHHHHHHHHHH--CCCEEEEECCCCCCHHHCCCEEEEECCC
Q ss_conf 156889998899999999873--4966999437989530012138987388
Q 001446 1017 DECTNATSVDVEEQLYRLAKD--MGITFVTSSQRPALIPFHSLELRLIDGE 1065 (1075)
Q Consensus 1017 DEATSaLD~~~e~~i~~~~~~--~~~TvI~IaHRl~~i~~~~~~l~~~~g~ 1065 (1075)
|||||+||+++++.+++.+++ +++|+|+|+||++++...|+++.+++|.
T Consensus 504 DEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~ 554 (587)
T 3qf4_A 504 DDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTALLADKILVLHEGK 554 (587)
T ss_dssp ESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHHHHTTSSEEEEEETTE
T ss_pred ECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCEEEEEECCE
T ss_conf 797544799999999999998679998999822768898199899998998
No 7
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=1.00 E-value=1 Score=491.49 Aligned_cols=459 Identities=15% Similarity=0.161 Sum_probs=300.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Q ss_conf 999999999999969999999999997625886177715899999974306888999999999996534576899-----
Q 001446 551 IAPSIRHLTARLALGWRIRMTQHLLKSYLRKNSFYKVFNMSSKSIDADQRITHDLEKLTTDLSGLVTGMVKPSVD----- 625 (1075)
Q Consensus 551 ~~~~~~~~~~~~~~~~r~~l~~~l~~~~l~~~~~~~~~~~~~~~~~~~~rl~~D~~~~~~~l~~~~~~~i~~~~~----- 625 (1075)
..+...+...+...+.|..+++++++. +..||+ ....++..+|+++|++.+...+...+..++..++.
T Consensus 81 ~~~~~~~~~~~~~~~lr~~l~~~ll~~---~~~~~~----~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~ 153 (578)
T 4a82_A 81 RQYLAQWTSNKILYDIRKKLYNHLQAL---SARFYA----NNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIAL 153 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS---CHHHHH----TSCHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCC---CHHHHC----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999999999878---999976----8986999999999999999999999999999999999999
Q ss_pred --HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
Q ss_conf --999999999941614699999999999999998436543204787761000256899998756876403990899999
Q 001446 626 --ILWFTWRMKALTGQRGVAILYAYMLLGLGFLRSVTPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFFGGGAREKAM 703 (1075)
Q Consensus 626 --~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 703 (1075)
+++++|.++++... ..++.......+.+.......+.+...+.......+...++++++.|+.++.+.+.
T Consensus 154 ~~l~~~~~~l~l~~l~--------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~ 225 (578)
T 4a82_A 154 SIMFFLDVKLTLAALF--------IFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKN 225 (578)
T ss_dssp HHHHHHCTTTHHHHTT--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
T ss_conf 9999996999999999--------99999999999999999999999999999999999998249999981664999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999987755568888731024689889999998611530111115678999999999999998779
Q 001446 704 IESRFRELLEHSLLLLKKKWLFGILDDFVTKQLPHNVTWGLSLLYAMEHKGDRALVSTQGELAHALRFLASVVSQSFLAF 783 (1075)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 783 (1075)
+.+...+..+...+..+..........++. .+...++++++...... . ..+.|.+.. +..+......++
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~v~~~g~~~v~~-g-~lt~g~l~~----~~~~~~~~~~~l 294 (578)
T 4a82_A 226 FDKKNTNFLTRALKHTRWNAYSFAAINTVT-----DIGPIIVIGVGAYLAIS-G-SITVGTLAA----FVGYLELLFGPL 294 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHH-T-SCCHHHHHH----HHHTHHHHTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHC-C-CCCHHHHHH----HHHHHHHHHHHH
T ss_conf 999999999999999999999999999999-----99999999999999985-9-958999999----999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCC-CCCCCCCCCEEECC
Q ss_conf 99999999999872145448989999863299998666776676788888995388100563798-53323234236508
Q 001446 784 GDILELHRKFVELSGGINRIFELEELLDAAQPGDDEISGSSQHKWNSTDYQDSISFSKLDIITPS-QKLLARQLTFEIVP 862 (1075)
Q Consensus 784 ~~~~~~~~~~~~~~~s~~Ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~~Vsf~yp~-~~~vL~~iSl~I~~ 862 (1075)
..+......+.+...+++|+.++.+.+++.++. .. .. +.....+.|+++||+|.||+ ..++|+|+||+|++
T Consensus 295 ~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~----~~-~~---~~~~~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~ 366 (578)
T 4a82_A 295 RRLVASFTTLTQSFASMDRVFQLIDEDYDIKNG----VG-AQ---PIEIKQGRIDIDHVSFQYNDNEAPILKDINLSIEK 366 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCCSSCCC----TT-CC---CCCCCSCCEEEEEEEECSCSSSCCSEEEEEEEECT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC----CC-CC---CCCCCCCEEEEEEEEEECCCCCCCCEEEEEEEECC
T ss_conf 999999999999999999999997689766678----77-66---66777880799999997589997413433799879
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEECCCCCCCCCC--CCCCCEEEECCCCCCCCCCHHHHHCCCCCHHHHHH
Q ss_conf 9869998499995889999992899999882764898775345--88672799708998897536564328997478999
Q 001446 863 GKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA--GSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAEL 940 (1075)
Q Consensus 863 Ge~vaIVG~SGsGKSTL~~lL~rl~~~~~G~I~idg~di~~~~--~~r~~i~~VpQdp~LF~GTIr~NL~yp~~~~~~~~ 940 (1075)
||++|||||||||||||+++|.|+|+|++|+|.+||.|+++.+ .+|.++++|||+|.+|++|++||+.++...
T Consensus 367 G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~----- 441 (578)
T 4a82_A 367 GETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPT----- 441 (578)
T ss_dssp TCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSSBHHHHHGGGCSS-----
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEHHHCCHHHHHHHEEEEECCCCCCCCCHHHHHHCCCCC-----
T ss_conf 999999899998599999998467889996799999984427899996006899289834764599998527999-----
Q ss_pred HHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHCCCCCCCC-CCCCCCCHHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 99663178865334454666899999976793123331003775556-64337993688799999975407978676156
Q 001446 941 RALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANL-NWEDILSLGEQQRLGMARLFFHKPKFGILDEC 1019 (1075)
Q Consensus 941 ~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~l~~~~~~~~~G~dt~~-~~g~~LSgGQrQrlaiARAlLr~p~ILiLDEA 1019 (1075)
..++++.++++.+++.++++..|+|+|+.. +.|.+||||||||+|||||++++|++++||||
T Consensus 442 -----------------~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~p~illlDEp 504 (578)
T 4a82_A 442 -----------------ATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEA 504 (578)
T ss_dssp -----------------CCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSEEEEEST
T ss_pred -----------------CCHHHHHHHHHHHCCHHHHHHCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf -----------------889999999988095999975733010253068896799999999999999749999999786
Q ss_pred CCCCCHHHHHHHHHHHHH--CCCEEEEECCCCCCHHHCCCEEEEECCC
Q ss_conf 889998899999999873--4966999437989530012138987388
Q 001446 1020 TNATSVDVEEQLYRLAKD--MGITFVTSSQRPALIPFHSLELRLIDGE 1065 (1075)
Q Consensus 1020 TSaLD~~~e~~i~~~~~~--~~~TvI~IaHRl~~i~~~~~~l~~~~g~ 1065 (1075)
||+||+++++.+++.+++ +++|+|+|+||+++++..|+++.+.+|.
T Consensus 505 ts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~ 552 (578)
T 4a82_A 505 TSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGH 552 (578)
T ss_dssp TTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTE
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCEEEEEECCE
T ss_conf 545799999999999999808997999831789997199899998998
No 8
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=1.00 E-value=1 Score=488.53 Aligned_cols=454 Identities=17% Similarity=0.225 Sum_probs=302.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH-------HHHH
Q ss_conf 999999999699999999999976258861777158999999743068889999999999965345768-------9999
Q 001446 555 IRHLTARLALGWRIRMTQHLLKSYLRKNSFYKVFNMSSKSIDADQRITHDLEKLTTDLSGLVTGMVKPS-------VDIL 627 (1075)
Q Consensus 555 ~~~~~~~~~~~~r~~l~~~l~~~~l~~~~~~~~~~~~~~~~~~~~rl~~D~~~~~~~l~~~~~~~i~~~-------~~~~ 627 (1075)
......+...+.|..+++++++. +..||+ ....++..+|+++|++.+...+...+..++..+ +.++
T Consensus 89 ~~~~~~~~~~~lr~~l~~~ll~~---~~~~~~----~~~~g~l~~rl~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~ 161 (582)
T 3b5x_A 89 LSWVSGNVVMQMRRRLFNHFMHM---PVRFFD----QESTGGLLSRITYDSEQVAGATSRALVSIVREGASIIGLLTLMF 161 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCC---CHHHHC----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999869---999977----89878999999988999999999999999999999999999999
Q ss_pred HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 99999999416146999999999999999984365432047877610002568999987568764039908999999999
Q 001446 628 WFTWRMKALTGQRGVAILYAYMLLGLGFLRSVTPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFFGGGAREKAMIESR 707 (1075)
Q Consensus 628 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 707 (1075)
+++|.++++.. +..++.......+.+.......+.+...+.+.....+...+.++++.|+.++.+.+.+.+.
T Consensus 162 ~~~~~l~li~l--------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~ 233 (582)
T 3b5x_A 162 WNSWQLSLVLI--------VVAPVVAFAISFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKV 233 (582)
T ss_pred HHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 98299999999--------9999999999999999999999999999999999999995199999708759999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999877555688887310246898899999986115301111156789999999999999987799999
Q 001446 708 FRELLEHSLLLLKKKWLFGILDDFVTKQLPHNVTWGLSLLYAMEHKGDRALVSTQGELAHALRFLASVVSQSFLAFGDIL 787 (1075)
Q Consensus 708 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 787 (1075)
.++..+...+..+...+......++. .+...++++++....... ..+.|.+.. +..+......++..+.
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~i~~~g~~~v~~g--~lt~g~l~~----~~~~~~~~~~pl~~l~ 302 (582)
T 3b5x_A 234 SNSMRQQTMKLVSAQSIADPVIQMIA-----SLALFAVLFLASVDSIRA--ELTPGTFTV----VFSAMFGLMRPLKALT 302 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHCC--CCCHHHHHH----HHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999-----999999999999999859--988999999----9999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCC-CCCCCCCCEEECCCCEE
Q ss_conf 99999998721454489899998632999986667766767888889953881005637985-33232342365089869
Q 001446 788 ELHRKFVELSGGINRIFELEELLDAAQPGDDEISGSSQHKWNSTDYQDSISFSKLDIITPSQ-KLLARQLTFEIVPGKSL 866 (1075)
Q Consensus 788 ~~~~~~~~~~~s~~Ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~~Vsf~yp~~-~~vL~~iSl~I~~Ge~v 866 (1075)
.....+.+...+++|+.++.+.+++.++ .. .+.++ ..+.|+++||+|.|++. .++|+|+||+|++||++
T Consensus 303 ~~~~~~~~~~~a~~ri~~~l~~~~~~~~------~~-~~~~~---~~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~G~~~ 372 (582)
T 3b5x_A 303 SVTSEFQRGMAACQTLFGLMDLETERDN------GK-YEAER---VNGEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTV 372 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCC------CC-CCCCC---CCCEEEEEEEEEECCCCCCCCCCCCEEEECCCCEE
T ss_conf 9999999999999999999758976777------77-77777---88828999989972899865400416998799989
Q ss_pred EEECCCCCCHHHHHHHHHCCCCCCCCEEECCCCCCCCC--CCCCCCEEEECCCCCCCCCCHHHHHCCCCCHHHHHHHHHH
Q ss_conf 99849999588999999289999988276489877534--5886727997089988975365643289974789999966
Q 001446 867 LVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE--AGSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALK 944 (1075)
Q Consensus 867 aIVG~SGsGKSTL~~lL~rl~~~~~G~I~idg~di~~~--~~~r~~i~~VpQdp~LF~GTIr~NL~yp~~~~~~~~~a~~ 944 (1075)
|||||||||||||+++|.|+|+|++|+|.+||.|+++. ..+|.++++|||+|.+|++|++||+.++...
T Consensus 373 ~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~--------- 443 (582)
T 3b5x_A 373 ALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEG--------- 443 (582)
T ss_pred EEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEHHHCCHHHHHCCEEEECCCCCCCCCCHHHHHHCCCCC---------
T ss_conf 99899999799999999657789998798999985638899996485898279905310299998566889---------
Q ss_pred HCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHCCCCCCCC-CCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC
Q ss_conf 3178865334454666899999976793123331003775556-643379936887999999754079786761568899
Q 001446 945 LHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANL-NWEDILSLGEQQRLGMARLFFHKPKFGILDECTNAT 1023 (1075)
Q Consensus 945 ~~~~~~~~~~~~~~~d~~i~~~l~~~~l~~~~~~~~~G~dt~~-~~g~~LSgGQrQrlaiARAlLr~p~ILiLDEATSaL 1023 (1075)
+..++++.++++.+++.++++..|+|+||.. +.|.+||||||||+|||||++++|+|++||||||+|
T Consensus 444 ------------~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~~p~illlDEpts~L 511 (582)
T 3b5x_A 444 ------------EYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSAL 511 (582)
T ss_pred ------------CCCHHHHHHHHHHCCCHHHHHHCCCCCCCHHCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf ------------99999999999987989999847653345106888847999999999999997499999997854468
Q ss_pred CHHHHHHHHHHHHH--CCCEEEEECCCCCCHHHCCCEEEEECCC
Q ss_conf 98899999999873--4966999437989530012138987388
Q 001446 1024 SVDVEEQLYRLAKD--MGITFVTSSQRPALIPFHSLELRLIDGE 1065 (1075)
Q Consensus 1024 D~~~e~~i~~~~~~--~~~TvI~IaHRl~~i~~~~~~l~~~~g~ 1065 (1075)
|+++++.+++.+++ +++|+|+|+||+++++..|+++.+++|+
T Consensus 512 D~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~ 555 (582)
T 3b5x_A 512 DTESERAIQAALDELQKNKTVLVIAHRLSTIEQADEILVVDEGE 555 (582)
T ss_pred CHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCEEEEEECCE
T ss_conf 99999999999999728998999936889998199899998998
No 9
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=1.00 E-value=1 Score=487.65 Aligned_cols=460 Identities=16% Similarity=0.215 Sum_probs=303.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999969999999999997625886177715899999974306888999999999996534576899999999999
Q 001446 555 IRHLTARLALGWRIRMTQHLLKSYLRKNSFYKVFNMSSKSIDADQRITHDLEKLTTDLSGLVTGMVKPSVDILWFTWRMK 634 (1075)
Q Consensus 555 ~~~~~~~~~~~~r~~l~~~l~~~~l~~~~~~~~~~~~~~~~~~~~rl~~D~~~~~~~l~~~~~~~i~~~~~~~~~~~~l~ 634 (1075)
......+...+.|..+++++++. +..||+- ...++..+|+++|++.+...+...+..++..++.++...+.+.
T Consensus 89 ~~~~~~~~~~~lr~~l~~~l~~~---~~~~~~~----~~~g~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~ 161 (582)
T 3b60_A 89 ISWVSGKVVMTMRRRLFGHMMGM---PVAFFDK----QSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMF 161 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTC---CSTHHHH----SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCC---CHHHHCC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999809---9999788----9865899999987999999999999999999999999999999
Q ss_pred HHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 94161469999999999999999843654320478776100025689999875687640399089999999999999999
Q 001446 635 ALTGQRGVAILYAYMLLGLGFLRSVTPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFFGGGAREKAMIESRFRELLEH 714 (1075)
Q Consensus 635 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 714 (1075)
.+..+..+.++ +..++.......+.+.......+.+...+.+.....+...+.++++.|+.++.+.+.+.+..++..+.
T Consensus 162 ~~~~~l~li~l-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~ 240 (582)
T 3b60_A 162 YYSWQLSIILV-VLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQ 240 (582)
T ss_dssp HHTTTTHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf 98099999999-99999999999999999999999999999999999999961999998376899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999998775556888873102468988999999861153011111567899999999999999877999999999999
Q 001446 715 SLLLLKKKWLFGILDDFVTKQLPHNVTWGLSLLYAMEHKGDRALVSTQGELAHALRFLASVVSQSFLAFGDILELHRKFV 794 (1075)
Q Consensus 715 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 794 (1075)
..+..+...+......++. .+...++++++....... ..+.|.+.. +..+......++..+......+.
T Consensus 241 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~g~~~v~~g--~lt~g~l~~----~~~~~~~~~~pl~~l~~~~~~~~ 309 (582)
T 3b60_A 241 GMKMVSASSISDPIIQLIA-----SLALAFVLYAASFPSVMD--SLTAGTITV----VFSSMIALMRPLKSLTNVNAQFQ 309 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHSSSTTS--SSHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHCC--CCCHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999999-----999999999999999849--998999999----99999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCC-CCCCCCCCEEECCCCEEEEECCCC
Q ss_conf 8721454489899998632999986667766767888889953881005637985-332323423650898699984999
Q 001446 795 ELSGGINRIFELEELLDAAQPGDDEISGSSQHKWNSTDYQDSISFSKLDIITPSQ-KLLARQLTFEIVPGKSLLVTGPNG 873 (1075)
Q Consensus 795 ~~~~s~~Ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~~Vsf~yp~~-~~vL~~iSl~I~~Ge~vaIVG~SG 873 (1075)
+...+++|+.++.+.+++.+ . .. .+.++ ..+.|+++||+|.|++. .++|+|+||+|++||++|||||||
T Consensus 310 ~~~~a~~ri~~~l~~~~~~~---~---~~-~~~~~---~~~~i~~~~v~~~y~~~~~~~l~~v~~~i~~G~~~~ivG~sG 379 (582)
T 3b60_A 310 RGMAACQTLFAILDSEQEKD---E---GK-RVIDR---ATGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSG 379 (582)
T ss_dssp HHHHHHHHHHHHHHSCCSCC---C---CC-BCCSC---CCCCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTT
T ss_pred HHHHHHHHHHHHHCCCCCCC---C---CC-CCCCC---CCCCEEEEEEEEECCCCCCCCCCCEEEEECCCCEEEEECCCC
T ss_conf 99999999999975998766---7---77-77778---888479998899739999744156159976999899989999
Q ss_pred CCHHHHHHHHHCCCCCCCCEEECCCCCCCCCC--CCCCCEEEECCCCCCCCCCHHHHHCCCC-CHHHHHHHHHHHCCCCC
Q ss_conf 95889999992899999882764898775345--8867279970899889753656432899-74789999966317886
Q 001446 874 SGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA--GSGCGIFYVPQRPYTCLGTLRDQIIYPL-SREEAELRALKLHGKGE 950 (1075)
Q Consensus 874 sGKSTL~~lL~rl~~~~~G~I~idg~di~~~~--~~r~~i~~VpQdp~LF~GTIr~NL~yp~-~~~~~~~~a~~~~~~~~ 950 (1075)
||||||+++|.|+++|++|+|.+||.|+++.+ .+|.++++|||+|.+|++|++||+.++. ..
T Consensus 380 sGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~--------------- 444 (582)
T 3b60_A 380 SGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEE--------------- 444 (582)
T ss_dssp SSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEEEECSSCCCCSSBHHHHHHTTTTSC---------------
T ss_pred CCHHHHHHHHHHCCCCCCCEEEECCEECCCCCHHHHHHHCEEECCCCCCCCCCHHHHHHCCCCCC---------------
T ss_conf 98999999986106898976979999823069999996080880687477878999985459999---------------
Q ss_pred CCCCCCCCCHHHHHHHHHHCCCHHHHHHHCCCCCCCC-CCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHH
Q ss_conf 5334454666899999976793123331003775556-643379936887999999754079786761568899988999
Q 001446 951 KLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANL-NWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEE 1029 (1075)
Q Consensus 951 ~~~~~~~~~d~~i~~~l~~~~l~~~~~~~~~G~dt~~-~~g~~LSgGQrQrlaiARAlLr~p~ILiLDEATSaLD~~~e~ 1029 (1075)
..++++.++++.+++.++++..|+|+|+.. +.|.+||||||||++||||++++|++++||||||+||+++++
T Consensus 445 -------~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~ 517 (582)
T 3b60_A 445 -------YSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESER 517 (582)
T ss_dssp -------CCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHH
T ss_pred -------CCHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHH
T ss_conf -------8999999999984979999845041145114798878999999999999997289989997865557989999
Q ss_pred HHHHHHHH--CCCEEEEECCCCCCHHHCCCEEEEECCC
Q ss_conf 99999873--4966999437989530012138987388
Q 001446 1030 QLYRLAKD--MGITFVTSSQRPALIPFHSLELRLIDGE 1065 (1075)
Q Consensus 1030 ~i~~~~~~--~~~TvI~IaHRl~~i~~~~~~l~~~~g~ 1065 (1075)
.+++.+++ +++|+|+|+||+++++..|+++.+++|+
T Consensus 518 ~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~ 555 (582)
T 3b60_A 518 AIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGI 555 (582)
T ss_dssp HHHHHHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTE
T ss_pred HHHHHHHHHHCCCEEEEEECCHHHHHHCCEEEEEECCE
T ss_conf 99999999967997999945477898599899997888
No 10
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=1.00 E-value=1 Score=480.76 Aligned_cols=461 Identities=17% Similarity=0.172 Sum_probs=302.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH-------HH
Q ss_conf 99999999999969999999999997625886177715899999974306888999999999996534576-------89
Q 001446 552 APSIRHLTARLALGWRIRMTQHLLKSYLRKNSFYKVFNMSSKSIDADQRITHDLEKLTTDLSGLVTGMVKP-------SV 624 (1075)
Q Consensus 552 ~~~~~~~~~~~~~~~r~~l~~~l~~~~l~~~~~~~~~~~~~~~~~~~~rl~~D~~~~~~~l~~~~~~~i~~-------~~ 624 (1075)
.+.......+...+.|..+++++++. +..||+ ....++..+|+++|++.+...+...+..++.. ++
T Consensus 83 ~~~~~~~~~~~~~~lr~~l~~~l~~~---~~~~~~----~~~~g~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~ 155 (595)
T 2yl4_A 83 VYLMQTSGQRIVNRLRTSLFSSILRQ---EVAFFD----KTRTGELINRLSSDTALLGRSVTENLSDGLRAGAQASVGIS 155 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS---CHHHHH----HSCHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCC---CHHHHC----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999819---999977----79848899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf 99999999999416146999999999999999984365432047877610002568999987568764039908999999
Q 001446 625 DILWFTWRMKALTGQRGVAILYAYMLLGLGFLRSVTPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFFGGGAREKAMI 704 (1075)
Q Consensus 625 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 704 (1075)
.+++++|.++++.. + ..++.........+.......+.+...+.......+...+.++++.|+.++.+.+.+
T Consensus 156 ~l~~~~~~l~li~l----~----~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~ 227 (595)
T 2yl4_A 156 MMFFVSPNLATFVL----S----VVPPVSIIAVIYGRYLRKLTKVTQDSLAQATQLAEERIGNVRTVRAFGKEMTEIEKY 227 (595)
T ss_dssp HHHHHCHHHHHHHH----H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_conf 99998199999999----9----999999999999999999999999999999999999981199999837569999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999877555688887310246898899999986115301111156789999999999999987799
Q 001446 705 ESRFRELLEHSLLLLKKKWLFGILDDFVTKQLPHNVTWGLSLLYAMEHKGDRALVSTQGELAHALRFLASVVSQSFLAFG 784 (1075)
Q Consensus 705 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 784 (1075)
.+..++..+...+..+...+......++. .+...++++++....... ..+.|.+... ..+......++.
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~g~~~v~~g--~lt~g~l~~~----~~~~~~~~~pl~ 296 (595)
T 2yl4_A 228 ASKVDHVMQLARKEAFARAGFFGATGLSG-----NLIVLSVLYKGGLLMGSA--HMTVGELSSF----LMYAFWVGISIG 296 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHTT--SCCHHHHHHH----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHCC--CCCHHHHHHH----HHHHHHHHHHHH
T ss_conf 99999999999999999999999999999-----999999999999999869--9789999999----999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC-EEEEEEEEECCCC--CCCCCCCCEEEC
Q ss_conf 9999999999872145448989999863299998666776676788888995-3881005637985--332323423650
Q 001446 785 DILELHRKFVELSGGINRIFELEELLDAAQPGDDEISGSSQHKWNSTDYQDS-ISFSKLDIITPSQ--KLLARQLTFEIV 861 (1075)
Q Consensus 785 ~~~~~~~~~~~~~~s~~Ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-I~f~~Vsf~yp~~--~~vL~~iSl~I~ 861 (1075)
.+...+..+.+...+++|+.++.+.+++.+. ..... +.....+. |+++||+|.|++. .++|+|+||+|+
T Consensus 297 ~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~----~~~~~----~~~~~~~~~i~~~~v~~~y~~~~~~~vl~~isl~i~ 368 (595)
T 2yl4_A 297 GLSSFYSELMKGLGAGGRLWELLEREPKLPF----NEGVI----LNEKSFQGALEFKNVHFAYPARPEVPIFQDFSLSIP 368 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCCCSSCS----SCSBC----CCTTTCCCCEEEEEEEEECSSCTTSEEEEEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC----CCCCC----CCCCCCCCEEEEEEEEEEECCCCCCCCCCCEEEEEC
T ss_conf 9999999999999999999999838976677----77877----776789983899988998589988812011279984
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEECCCCCCCCCC--CCCCCEEEECCCCCCCCCCHHHHHCCCCCHHHHH
Q ss_conf 89869998499995889999992899999882764898775345--8867279970899889753656432899747899
Q 001446 862 PGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA--GSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAE 939 (1075)
Q Consensus 862 ~Ge~vaIVG~SGsGKSTL~~lL~rl~~~~~G~I~idg~di~~~~--~~r~~i~~VpQdp~LF~GTIr~NL~yp~~~~~~~ 939 (1075)
+||++|||||||||||||+++|.|+++|++|+|.+||.|+++.+ .+|.++++|||+|.+|++|++|||.++....
T Consensus 369 ~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~--- 445 (595)
T 2yl4_A 369 SGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDP--- 445 (595)
T ss_dssp TTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTEETTTBCHHHHHHSEEEECSSCCCCSSBHHHHHHTTSSST---
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEHHHCCHHHHHHCEEEECCCCCCCCCCHHHHHHHCCCCC---
T ss_conf 99889998999997999999982585789837999999811179999973228983688326877999984058776---
Q ss_pred HHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHCCCCCCCC-CCCCCCCHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 999663178865334454666899999976793123331003775556-6433799368879999997540797867615
Q 001446 940 LRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANL-NWEDILSLGEQQRLGMARLFFHKPKFGILDE 1018 (1075)
Q Consensus 940 ~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~l~~~~~~~~~G~dt~~-~~g~~LSgGQrQrlaiARAlLr~p~ILiLDE 1018 (1075)
.+..++++.++++.+++.++++.+|+|+|+.. +.|.+||||||||++||||++++|++++|||
T Consensus 446 ----------------~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iAral~~~p~illlDE 509 (595)
T 2yl4_A 446 ----------------SSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDE 509 (595)
T ss_dssp ----------------TTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHHHHHHHCCSEEEEEC
T ss_pred ----------------CCCCHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf ----------------6568999999999869799997473201350168878689999999999999975999999988
Q ss_pred CCCCCCHHHHHHHHHHHHH--CCCEEEEECCCCCCHHHCCCEEEEECCC
Q ss_conf 6889998899999999873--4966999437989530012138987388
Q 001446 1019 CTNATSVDVEEQLYRLAKD--MGITFVTSSQRPALIPFHSLELRLIDGE 1065 (1075)
Q Consensus 1019 ATSaLD~~~e~~i~~~~~~--~~~TvI~IaHRl~~i~~~~~~l~~~~g~ 1065 (1075)
|||+||+++++.+.+.+++ .++|+|+|+||+++++..|+++.+++|+
T Consensus 510 pts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~ 558 (595)
T 2yl4_A 510 ATSALDAENEYLVQEALDRLMDGRTVLVIAHRLSTIKNANMVAVLDQGK 558 (595)
T ss_dssp CCSSCCHHHHHHHHHHHHHHHTTSEEEEECCCHHHHHHSSEEEEEETTE
T ss_pred CCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHCCCEEEEEECCE
T ss_conf 6668998999999999999965997999946878997599899998998
Done!