BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 001447
         (1075 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4HPQ|C Chain C, Crystal Structure Of The Atg17-Atg31-Atg29 Complex
 pdb|4HPQ|F Chain F, Crystal Structure Of The Atg17-Atg31-Atg29 Complex
          Length = 413

 Score = 35.8 bits (81), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 31/116 (26%), Positives = 58/116 (50%), Gaps = 15/116 (12%)

Query: 31  LKEAGLDEVSIKRR----------DKAALIAYIAKLETEIFEHQHHM----GLLILEKKE 76
           L++A +D  S  R+          DKA + A ++KL TE+ +H+ ++    G+  L +K 
Sbjct: 254 LQDAAIDVASFVRKVNMLLDERDADKAKMQATLSKLLTELRKHEEYISVFEGISALIQKF 313

Query: 77  LASKYEQIKASAEAAELLQKHDRASHLSAIAEARKREESLKKTLGVEKECIASLEK 132
            AS  E I+ +    +     +R+ H + + E ++R+E+  K   + K C   LE+
Sbjct: 314 KASCLEDIRQTRNLLDFYANFERSYH-NLLKEVKRRKETAAKLSQILKSCETQLEQ 368


>pdb|1IDM|A Chain A, 3-Isopropylmalate Dehydrogenase, Loop-Deleted Chimera
          Length = 343

 Score = 30.8 bits (68), Expect = 4.0,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 38/90 (42%), Gaps = 13/90 (14%)

Query: 856 FGEPKVILEVPSENEVVKRTVDLESENNQNAAQKCKQSVSEDGIHAARKRRVDVDCVDPS 915
           FGEP+ + E              E+ N +  ++   + V+     AARKRR  V  VD +
Sbjct: 138 FGEPRGMSEA-------------EAWNTERYSKPEVERVARVAFEAARKRRKHVVSVDKA 184

Query: 916 ELLMQNNKRRKQQEDFPRNSSEEAINHGAV 945
            +L      RK  E+  R   + A+ H  V
Sbjct: 185 NVLEVGEFWRKTVEEVGRGYPDVALEHQYV 214


>pdb|1IPD|A Chain A, Three-Dimensional Structure Of A Highly Thermostable
           Enzyme, 3- Isopropylmalate Dehydrogenase Of Thermus
           Thermophilus At 2.2 Angstroms Resolution
          Length = 345

 Score = 30.8 bits (68), Expect = 4.2,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 38/90 (42%), Gaps = 13/90 (14%)

Query: 856 FGEPKVILEVPSENEVVKRTVDLESENNQNAAQKCKQSVSEDGIHAARKRRVDVDCVDPS 915
           FGEP+ + E              E+ N +  ++   + V+     AARKRR  V  VD +
Sbjct: 140 FGEPRGMSEA-------------EAWNTERYSKPEVERVARVAFEAARKRRKHVVSVDKA 186

Query: 916 ELLMQNNKRRKQQEDFPRNSSEEAINHGAV 945
            +L      RK  E+  R   + A+ H  V
Sbjct: 187 NVLEVGEFWRKTVEEVGRGYPDVALEHQYV 216


>pdb|1OSI|A Chain A, Structure Of 3-Isopropylmalate Dehydrogenase
 pdb|1OSI|B Chain B, Structure Of 3-Isopropylmalate Dehydrogenase
 pdb|1OSI|C Chain C, Structure Of 3-Isopropylmalate Dehydrogenase
 pdb|1OSI|D Chain D, Structure Of 3-Isopropylmalate Dehydrogenase
 pdb|1HEX|A Chain A, Structure Of 3-Isopropylmalate Dehydrogenase In Complex
           With Nad+: Ligand-Induced Loop-Closing And Mechanism For
           Cofactor Specificity
 pdb|1XAA|A Chain A, 3-Isopropylmalate Dehydrogenase, Low Temperature (100k)
           Structure
 pdb|1XAB|A Chain A, 3-Isopropylmalate Dehydrogenase, Low Temperature (150k)
           Structure
 pdb|2ZTW|A Chain A, Structure Of 3-Isopropylmalate Dehydrogenase In Complex
           With The Inhibitor And Nad+
          Length = 345

 Score = 30.8 bits (68), Expect = 4.5,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 38/90 (42%), Gaps = 13/90 (14%)

Query: 856 FGEPKVILEVPSENEVVKRTVDLESENNQNAAQKCKQSVSEDGIHAARKRRVDVDCVDPS 915
           FGEP+ + E              E+ N +  ++   + V+     AARKRR  V  VD +
Sbjct: 140 FGEPRGMSEA-------------EAWNTERYSKPEVERVARVAFEAARKRRKHVVSVDKA 186

Query: 916 ELLMQNNKRRKQQEDFPRNSSEEAINHGAV 945
            +L      RK  E+  R   + A+ H  V
Sbjct: 187 NVLEVGEFWRKTVEEVGRGYPDVALEHQYV 216


>pdb|1WAL|A Chain A, 3-Isopropylmalate Dehydrogenase (Ipmdh) Mutant (M219a)from
           Thermus Thermophilus
          Length = 345

 Score = 30.8 bits (68), Expect = 4.5,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 38/90 (42%), Gaps = 13/90 (14%)

Query: 856 FGEPKVILEVPSENEVVKRTVDLESENNQNAAQKCKQSVSEDGIHAARKRRVDVDCVDPS 915
           FGEP+ + E              E+ N +  ++   + V+     AARKRR  V  VD +
Sbjct: 140 FGEPRGMSEA-------------EAWNTERYSKPEVERVARVAFEAARKRRKHVVSVDKA 186

Query: 916 ELLMQNNKRRKQQEDFPRNSSEEAINHGAV 945
            +L      RK  E+  R   + A+ H  V
Sbjct: 187 NVLEVGEFWRKTVEEVGRGYPDVALEHQYV 216


>pdb|1XAC|A Chain A, Chimera Isopropylmalate Dehydrogenase Between Bacillus
           Subtilis (M) And Thermus Thermophilus (T) From
           N-Terminal: 20% T Middle 20% M Residual 60% T, Mutated
           At S82r. Low Temperature (100k) Structure.
 pdb|1XAD|A Chain A, Chimera Isopropylmalate Dehydrogenase Between Bacillus
           Subtilis (M) And Thermus Thermophilus (T) From
           N-Terminal: 20% T Middle 20% M Residual 60% T, Mutated
           At S82r. Low Temperature (150k) Structure
          Length = 345

 Score = 30.4 bits (67), Expect = 5.3,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 38/90 (42%), Gaps = 13/90 (14%)

Query: 856 FGEPKVILEVPSENEVVKRTVDLESENNQNAAQKCKQSVSEDGIHAARKRRVDVDCVDPS 915
           FGEP+ + E              E+ N +  ++   + V+     AARKRR  V  VD +
Sbjct: 140 FGEPRGMSEA-------------EAWNTERYSKPEVERVARVAFEAARKRRKHVVSVDKA 186

Query: 916 ELLMQNNKRRKQQEDFPRNSSEEAINHGAV 945
            +L      RK  E+  R   + A+ H  V
Sbjct: 187 NVLEVGEFWRKTVEEVGRGYPDVALEHQYV 216


>pdb|1RJ5|A Chain A, Crystal Structure Of The Extracellular Domain Of Murine
           Carbonic Anhydrase Xiv
 pdb|1RJ5|B Chain B, Crystal Structure Of The Extracellular Domain Of Murine
           Carbonic Anhydrase Xiv
 pdb|1RJ6|A Chain A, Crystal Structure Of The Extracellular Domain Of Murine
           Carbonic Anhydrase Xiv In Complex With Acetazolamide
 pdb|1RJ6|B Chain B, Crystal Structure Of The Extracellular Domain Of Murine
           Carbonic Anhydrase Xiv In Complex With Acetazolamide
          Length = 261

 Score = 30.0 bits (66), Expect = 7.3,   Method: Composition-based stats.
 Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 5/95 (5%)

Query: 251 NEREDHILSKLQELSRKEKELEASRANVEEKFKALNEE--KSNLDLTLVSLLKRE-EAVI 307
           N   DHILS+L E+  K+++      +V E F    E+  + N  LT     +     V 
Sbjct: 154 NPAYDHILSRLHEIRYKDQKTSVPPFSVRELFPQQLEQFFRYNGSLTTPPCYQSVLWTVF 213

Query: 308 EREASLQKKEQKLLVSQETLASKESNEIQKIIANH 342
            R A +   + + L  QETL+S E +  + ++ N+
Sbjct: 214 NRRAQISMGQLEKL--QETLSSTEEDPSEPLVQNY 246


>pdb|2JES|A Chain A, Portal Protein From Bacteriophage Spp1
 pdb|2JES|C Chain C, Portal Protein From Bacteriophage Spp1
 pdb|2JES|E Chain E, Portal Protein From Bacteriophage Spp1
 pdb|2JES|G Chain G, Portal Protein From Bacteriophage Spp1
 pdb|2JES|I Chain I, Portal Protein From Bacteriophage Spp1
 pdb|2JES|K Chain K, Portal Protein From Bacteriophage Spp1
 pdb|2JES|M Chain M, Portal Protein From Bacteriophage Spp1
 pdb|2JES|O Chain O, Portal Protein From Bacteriophage Spp1
 pdb|2JES|Q Chain Q, Portal Protein From Bacteriophage Spp1
 pdb|2JES|S Chain S, Portal Protein From Bacteriophage Spp1
 pdb|2JES|U Chain U, Portal Protein From Bacteriophage Spp1
 pdb|2JES|W Chain W, Portal Protein From Bacteriophage Spp1
 pdb|2JES|Y Chain Y, Portal Protein From Bacteriophage Spp1
          Length = 503

 Score = 30.0 bits (66), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 8/53 (15%)

Query: 323 SQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAW 375
           S + +A  ++  IQK+I  H     +K         ++Y + E++IEKKRR +
Sbjct: 22  SAKEIAEPDTTMIQKLIDEHNPEPLLK--------GVRYYMCENDIEKKRRTY 66


>pdb|2VGI|A Chain A, Human Erythrocyte Pyruvate Kinase: R486w Mutant
 pdb|2VGI|B Chain B, Human Erythrocyte Pyruvate Kinase: R486w Mutant
 pdb|2VGI|C Chain C, Human Erythrocyte Pyruvate Kinase: R486w Mutant
 pdb|2VGI|D Chain D, Human Erythrocyte Pyruvate Kinase: R486w Mutant
          Length = 528

 Score = 29.6 bits (65), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 7/80 (8%)

Query: 130 LEKAVHEIRAESAETKVAADSKFAEARCMV---ENAQKKFAEAEAKLHAAESLQAEANRY 186
           LE  + + R   AET   A++    A C++   E A+  F     K+  A + +AEA  Y
Sbjct: 328 LESMITKPRPTRAETSDVANAVLDGADCIMLSGETAKGNFPVEAVKMQHAIAREAEAAVY 387

Query: 187 HRSAERKLQEVVAREDDLSR 206
           H    R+L E + R   LSR
Sbjct: 388 H----RQLFEELRRAAPLSR 403


>pdb|2VGB|A Chain A, Human Erythrocyte Pyruvate Kinase
 pdb|2VGB|B Chain B, Human Erythrocyte Pyruvate Kinase
 pdb|2VGB|C Chain C, Human Erythrocyte Pyruvate Kinase
 pdb|2VGB|D Chain D, Human Erythrocyte Pyruvate Kinase
          Length = 528

 Score = 29.6 bits (65), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 7/80 (8%)

Query: 130 LEKAVHEIRAESAETKVAADSKFAEARCMV---ENAQKKFAEAEAKLHAAESLQAEANRY 186
           LE  + + R   AET   A++    A C++   E A+  F     K+  A + +AEA  Y
Sbjct: 328 LESMITKPRPTRAETSDVANAVLDGADCIMLSGETAKGNFPVEAVKMQHAIAREAEAAVY 387

Query: 187 HRSAERKLQEVVAREDDLSR 206
           H    R+L E + R   LSR
Sbjct: 388 H----RQLFEELRRAAPLSR 403


>pdb|4IMA|A Chain A, The Structure Of C436m-hlpyk In Complex With
           Citrate/mn/atp/fru-1,6-bp
 pdb|4IMA|B Chain B, The Structure Of C436m-hlpyk In Complex With
           Citrate/mn/atp/fru-1,6-bp
 pdb|4IMA|C Chain C, The Structure Of C436m-hlpyk In Complex With
           Citrate/mn/atp/fru-1,6-bp
 pdb|4IMA|D Chain D, The Structure Of C436m-hlpyk In Complex With
           Citrate/mn/atp/fru-1,6-bp
          Length = 543

 Score = 29.6 bits (65), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 7/80 (8%)

Query: 130 LEKAVHEIRAESAETKVAADSKFAEARCMV---ENAQKKFAEAEAKLHAAESLQAEANRY 186
           LE  + + R   AET   A++    A C++   E A+  F     K+  A + +AEA  Y
Sbjct: 343 LESMITKARPTRAETSDVANAVLDGADCIMLSGETAKGNFPVEAVKMQHAIAREAEAAVY 402

Query: 187 HRSAERKLQEVVAREDDLSR 206
           H    R+L E + R   LSR
Sbjct: 403 H----RQLFEELRRAAPLSR 418


>pdb|2VGG|A Chain A, Human Erythrocyte Pyruvate Kinase: R479h Mutant
 pdb|2VGG|B Chain B, Human Erythrocyte Pyruvate Kinase: R479h Mutant
 pdb|2VGG|C Chain C, Human Erythrocyte Pyruvate Kinase: R479h Mutant
 pdb|2VGG|D Chain D, Human Erythrocyte Pyruvate Kinase: R479h Mutant
          Length = 528

 Score = 29.6 bits (65), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 7/80 (8%)

Query: 130 LEKAVHEIRAESAETKVAADSKFAEARCMV---ENAQKKFAEAEAKLHAAESLQAEANRY 186
           LE  + + R   AET   A++    A C++   E A+  F     K+  A + +AEA  Y
Sbjct: 328 LESMITKPRPTRAETSDVANAVLDGADCIMLSGETAKGNFPVEAVKMQHAIAREAEAAVY 387

Query: 187 HRSAERKLQEVVAREDDLSR 206
           H    R+L E + R   LSR
Sbjct: 388 H----RQLFEELRRAAPLSR 403


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.310    0.125    0.329 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,393,576
Number of Sequences: 62578
Number of extensions: 872668
Number of successful extensions: 2563
Number of sequences better than 100.0: 77
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 63
Number of HSP's that attempted gapping in prelim test: 2466
Number of HSP's gapped (non-prelim): 136
length of query: 1075
length of database: 14,973,337
effective HSP length: 109
effective length of query: 966
effective length of database: 8,152,335
effective search space: 7875155610
effective search space used: 7875155610
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 57 (26.6 bits)