Query 001447
Match_columns 1075
No_of_seqs 42 out of 44
Neff 3.1
Searched_HMMs 29240
Date Tue Mar 26 17:07:21 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001447.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_746-750//hhsearch_pdb/001447hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1i84_S Smooth muscle myosin he 1.0 1 1 62.6 10.2 13 21-33 324-336 (1184)
2 1i84_S Smooth muscle myosin he 1.0 1 1 56.9 9.1 22 64-85 457-480 (1184)
3 3vkg_A Dynein heavy chain, cyt 1.0 1 1 30.7 27.0 31 716-747 2392-2422(3245)
4 3na7_A HP0958; flagellar bioge 1.0 1 1 28.1 21.9 69 476-545 3-71 (256)
5 1c1g_A Tropomyosin; contractIl 1.0 1 1 27.0 39.9 280 400-714 1-280 (284)
6 2dfs_A Myosin-5A; myosin-V, in 1.0 1 1 23.3 19.6 19 20-38 297-319 (1080)
7 2qag_B Septin-6, protein NEDD5 1.0 1 1 17.8 0.0 13 19-31 50-62 (427)
8 2oka_A Hypothetical protein; P 1.0 1 1 17.1 -1.9 47 3-49 34-82 (104)
9 2p0g_A Selenoprotein W-related 1.0 1 1 17.0 -3.2 42 3-44 32-75 (105)
10 3oja_A Leucine-rich immune mol 1.0 1 1 16.7 15.5 117 430-546 357-482 (487)
No 1
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=1.00 E-value=1 Score=62.59 Aligned_cols=13 Identities=15% Similarity=0.378 Sum_probs=5.5
Q ss_pred CCCCHHHHHHHHH
Q ss_conf 9992789999998
Q 001447 21 PLSDESIWKRLKE 33 (1075)
Q Consensus 21 ~~~d~~iWkr~~e 33 (1075)
+..|...|..++.
T Consensus 324 ~~~d~~~f~~~~~ 336 (1184)
T 1i84_S 324 AQQDDEMFQETLE 336 (1184)
T ss_dssp TCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
T ss_conf 9876999999999
No 2
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=1.00 E-value=1 Score=56.90 Aligned_cols=22 Identities=23% Similarity=0.430 Sum_probs=8.4
Q ss_pred HHCCCHHHEEHHHH--HHHHHHHH
Q ss_conf 31000232002134--32499999
Q 001447 64 QHHMGLLILEKKEL--ASKYEQIK 85 (1075)
Q Consensus 64 QynMGLLLiEkKEw--tSK~eelk 85 (1075)
.+.+|+|=|=-=|- ..-||||-
T Consensus 457 ~~~IgvLDi~GFE~f~~NsfeQlc 480 (1184)
T 1i84_S 457 ASFLGILDIAGFEIFEINSFEQLC 480 (1184)
T ss_dssp CEEEEEEECCCCCCCSSBCHHHHH
T ss_pred CCEEEEEECCCCCCCCCCHHHHHH
T ss_conf 535888624786777744399998
No 3
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=1.00 E-value=1 Score=30.66 Aligned_cols=31 Identities=23% Similarity=0.240 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99999999842102468677677584632103
Q 001447 716 EEIQAESERLKKLEDLKIAVDYMAVSEMQRSR 747 (1075)
Q Consensus 716 e~fl~~vEklK~ckncg~~~~~~vLSdlq~s~ 747 (1075)
..|-..-+.++.+-.-|-++ .|+++||.+.+
T Consensus 2392 ~~I~~~R~~YrpvA~r~s~L-yF~i~dL~~i~ 2422 (3245)
T 3vkg_A 2392 QEISEVSALYNPMALSCSRV-YFAMEELSQFH 2422 (3245)
T ss_dssp HHHHHHHHHSHHHHHHHHHH-HHHHTGGGGST
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHCCC
T ss_conf 99999999869999999899-99999973078
No 4
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=1.00 E-value=1 Score=28.07 Aligned_cols=69 Identities=14% Similarity=0.103 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 2664456778999889999999999998678657889999977999866389899999999899998999
Q 001447 476 MKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVV 545 (1075)
Q Consensus 476 teeER~E~~~LQ~eLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~el~KEa~~I~eEre~ 545 (1075)
|.+.=.-++.||. +-.+|+.++++...|-++.++|..+...+....+.+...-..+.++...+..+=..
T Consensus 3 m~~~L~~L~~LQ~-lD~~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~ 71 (256)
T 3na7_A 3 SNTHLKQLIEISH-LDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQD 71 (256)
T ss_dssp CHHHHHHHHHHHH-HHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 6899999999999-99999999999987589999999999999999999999999999999999978999
No 5
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=1.00 E-value=1 Score=27.03 Aligned_cols=280 Identities=13% Similarity=0.117 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 88988766669998665499986668889975788888787799999879889875542699988878888546532664
Q 001447 400 SRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSE 479 (1075)
Q Consensus 400 ~~~lkEKEkdl~~Ksk~LKEkEksL~aeEK~le~ek~~L~~ekEel~~lK~dlEK~~a~~e~q~~qi~ee~E~LkiteeE 479 (1075)
++.|+.|=.-+......+...=..+...-..+ ...+..-...+..+...+......+..-...+......+.-...+
T Consensus 1 ~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~l---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (284)
T 1c1g_A 1 MDAIKKKMQMLKLDKENALDRADEAEADKKAA---EDRSKQLEDELVSLQKKLKATEDELDKYSEALKDAQEKLELAEKK 77 (284)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 93789999998876888999999999999999---988988899999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 45677899988999999999999867865788999997799986638989999999989999899998764536664599
Q 001447 480 AGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQ 559 (1075)
Q Consensus 480 R~E~~~LQ~eLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~el~KEa~~I~eEre~lek~~~~E~erLK~ 559 (1075)
...+-.-...++..|..+......+..+...+.......+..++.+......+......+..+...+..-+..-...+..
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 157 (284)
T 1c1g_A 78 ATDAEADVASLNRRIQLFEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAED 157 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 98779889999999998898899889889999999999998888899999988877751066799999999999998888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999975345565628999886454556687899888997655567632103899999899987679999999999
Q 001447 560 ERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFREREKAFEE 639 (1075)
Q Consensus 560 Ek~~~r~~~krelE~L~~ekEsF~~~MehErs~~~eKiq~Erad~l~diElqkreLE~~iq~RqEEiE~~L~EREk~FEe 639 (1075)
-....... ...+..+......+...+. .+.-+...+...+..-..++ .
T Consensus 158 ~~~~~~~~-~~~~~~l~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~------------~ 205 (284)
T 1c1g_A 158 ADRKYEEV-ARKLVIIESDLERAEERAE-------------------LSEGKCAELEEEIKTVTNNL------------K 205 (284)
T ss_dssp HHHHHHHH-THHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHH------------H
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHH------------H
T ss_conf 99889999-9889988888998999898-------------------78879999999999999999------------9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999895532458999999999799999976799887644464446879998750999999999899999998984
Q 001447 640 EKMREFQQISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQKLEEQRQLLHAD 714 (1075)
Q Consensus 640 ek~~EL~~IN~lkE~a~kElEev~lE~~rLekER~Ei~~~ke~le~e~aEm~kdIeeL~~ls~KLk~QRE~l~~E 714 (1075)
.....+..+......+...+....-++..+......+......+......+...+..+.....++..+.+.+...
T Consensus 206 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (284)
T 1c1g_A 206 SLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDHALND 280 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999758778889999999999999888989988999998899999999999999999998899999999999997
No 6
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=1.00 E-value=1 Score=23.32 Aligned_cols=19 Identities=11% Similarity=0.289 Sum_probs=10.4
Q ss_pred CCCCCHHHHHHHHH----CCCCH
Q ss_conf 99992789999998----16893
Q 001447 20 SPLSDESIWKRLKE----AGLDE 38 (1075)
Q Consensus 20 ~~~~d~~iWkr~~e----aG~De 38 (1075)
.+..|...|..++. .||..
T Consensus 297 ~~~dD~~~f~~~~~A~~~lg~~~ 319 (1080)
T 2dfs_A 297 DGIDDAKEMVNTRQACTLLGISD 319 (1080)
T ss_dssp TTCCHHHHHHHHHHHHHHTTCCH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCH
T ss_conf 88548999999999999869999
No 7
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=17.75 Aligned_cols=13 Identities=15% Similarity=0.368 Sum_probs=6.5
Q ss_pred CCCCCCHHHHHHH
Q ss_conf 6999927899999
Q 001447 19 QSPLSDESIWKRL 31 (1075)
Q Consensus 19 ~~~~~d~~iWkr~ 31 (1075)
.+++|-.+.-+.+
T Consensus 50 ~nGaGKSTLln~L 62 (427)
T 2qag_B 50 ETGLGKSTLMDTL 62 (427)
T ss_dssp STTSSSHHHHHHH
T ss_pred CCCCCHHHHHHHH
T ss_conf 9999999999999
No 8
>2oka_A Hypothetical protein; PAR82, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.50A {Pseudomonas aeruginosa} PDB: 2obk_A
Probab=1.00 E-value=1 Score=17.14 Aligned_cols=47 Identities=17% Similarity=0.516 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCC-CCCCCCCCCHHHHHHHHHCCC-CHHHHHHHCHHHH
Q ss_conf 9999862006898-433699992789999998168-9377832069999
Q 001447 3 SPSSGRLAITPSS-RVLQSPLSDESIWKRLKEAGL-DEVSIKRRDKAAL 49 (1075)
Q Consensus 3 ~p~~~~l~~~~g~-rv~~~~~~d~~iWkr~~eaG~-De~S~~rkD~~aL 49 (1075)
|..+++++..||+ ++..-.+.+.-||.|..+-|| |...++.+=+.++
T Consensus 34 ~~~l~~v~l~P~~~G~FEV~vng~lV~SKk~~ggFPe~~eLkq~Vrd~i 82 (104)
T 2oka_A 34 ADDLGKVCLEPGTGGVFRITCDGVQVWERKADGGFPEAKALKQRVRDRI 82 (104)
T ss_dssp TTTCSEEEEEEECTTCEEEEETTEEEEEHHHHTSCCCHHHHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCEEEEEECCEEEEEEECCCCCCCHHHHHHHHHHHH
T ss_conf 8642239878379966999989999899715899899899999999875
No 9
>2p0g_A Selenoprotein W-related protein; VCR75, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Vibrio cholerae}
Probab=1.00 E-value=1 Score=17.00 Aligned_cols=42 Identities=24% Similarity=0.438 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCC-CCCCCCCCCHHHHHHHHHCCC-CHHHHHHH
Q ss_conf 9999862006898-433699992789999998168-93778320
Q 001447 3 SPSSGRLAITPSS-RVLQSPLSDESIWKRLKEAGL-DEVSIKRR 44 (1075)
Q Consensus 3 ~p~~~~l~~~~g~-rv~~~~~~d~~iWkr~~eaG~-De~S~~rk 44 (1075)
|..+++++..||+ ++..--+.+.-||.|..+-|| |...++.+
T Consensus 32 ~~~l~~v~l~P~~~G~FEV~vng~lV~SKk~~ggFPe~~eLkq~ 75 (105)
T 2p0g_A 32 SEEIEYVALHPDTGGRFEIFCNGVQIWERKQEGGFPEAKVLKQR 75 (105)
T ss_dssp TTTEEEEEEEEESTTCEEEEETTEEEEEHHHHTSCCCHHHHHHH
T ss_pred CCCCCEEEEEECCCCEEEEEECCEEEEEEECCCCCCCHHHHHHH
T ss_conf 86532398783799669999899998997258998998999999
No 10
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=1.00 E-value=1 Score=16.66 Aligned_cols=117 Identities=11% Similarity=0.049 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 7578888878779999987988987554269998887888854---------6532664456778999889999999999
Q 001447 430 EADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDK---------LEAMKSEAGELSVLEIKLKEELDVVRAQ 500 (1075)
Q Consensus 430 ~le~ek~~L~~ekEel~~lK~dlEK~~a~~e~q~~qi~ee~E~---------LkiteeER~E~~~LQ~eLKeEId~~R~Q 500 (1075)
....++.++...+.++...-..+++..++......+.....+. +..+..-..-+-.+..++-.|++..+..
T Consensus 357 ~~~~~~~~l~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (487)
T 3oja_A 357 LRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRD 436 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCCCCCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHH
T ss_conf 99988899988899999999988888764112687750102100022135728999999999999889999875030133
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9986786578899999779998663898999999998999989999
Q 001447 501 KLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVV 546 (1075)
Q Consensus 501 ke~LlkEae~Lk~eKekFE~EWE~LDEKR~el~KEa~~I~eEre~l 546 (1075)
......+.+.|+.++++-+++-+.+|..=++..-...+...++..+
T Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (487)
T 3oja_A 437 WDMYQHKETQLAEENARLKKLNGEADLALASANATLQELVVREQNL 482 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 5554347788887765455311044445674543799999999988
Done!