Query 001447
Match_columns 1075
No_of_seqs 42 out of 44
Neff 3.1
Searched_HMMs 13730
Date Tue Mar 26 17:12:12 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001447.a3m -d /local_scratch/syshi/scop70.hhm -v 0 -o /local_scratch/syshi/H1_746-750//hhsearch_scop/001447hhsearch_scop
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2cosa1 a.5.2.1 (A:8-48) Serin 10.8 26 0.0019 9.6 3.8 32 25-56 3-41 (41)
2 d1aopa2 d.58.36.1 (A:346-425) 8.6 35 0.0025 8.7 0.1 26 11-36 47-75 (80)
3 d1l5ja3 c.83.1.1 (A:373-862) A 4.9 37 0.0027 8.5 -1.5 11 805-815 84-94 (490)
4 d2b3ya2 c.83.1.1 (A:2-630) Iro 4.6 37 0.0027 8.5 -1.7 25 804-828 151-177 (629)
5 d2fa8a1 c.47.1.23 (A:4-89) Hyp 4.2 25 0.0018 9.7 -2.8 25 22-46 51-76 (86)
6 d1aopa1 d.58.36.1 (A:81-145) S 3.5 1.1E+02 0.0078 5.2 2.4 31 7-37 30-63 (65)
7 d1zu2a1 a.118.8.1 (A:1-145) Mi 3.3 1.2E+02 0.0086 4.9 5.0 34 49-82 19-52 (145)
8 d1b77a1 d.131.1.2 (A:1-110) gp 3.2 1.2E+02 0.0088 4.9 0.9 24 846-871 84-107 (110)
9 d1lmra_ g.3.6.3 (A:) ADO1 {Ass 3.1 1.2E+02 0.0089 4.8 -0.1 21 1046-1066 2-22 (35)
10 d1fiua_ c.52.1.10 (A:) Restric 2.9 1.4E+02 0.01 4.5 2.1 24 98-121 109-132 (286)
No 1
>d2cosa1 a.5.2.1 (A:8-48) Serine/threonine protein kinase LATS2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=10.76 E-value=26 Score=9.59 Aligned_cols=32 Identities=31% Similarity=0.489 Sum_probs=24.9
Q ss_pred HHHHHHHHHCCCCHHHHHH-------HCHHHHHHHHHHH
Q ss_conf 7899999981689377832-------0699999999988
Q 001447 25 ESIWKRLKEAGLDEVSIKR-------RDKAALIAYIAKL 56 (1075)
Q Consensus 25 ~~iWkr~~eaG~De~S~~r-------kD~~aLia~IskL 56 (1075)
-.+.+-+.-||||++-.-| |.-+|.++||||.
T Consensus 3 RQMlqdl~~aG~D~~m~iral~qt~~rsieaaie~iskm 41 (41)
T d2cosa1 3 RQMLQELVNAGCDQEMAGRALKQTGSRSIEAALEYISKM 41 (41)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHCC
T ss_conf 889999999079799999999982762299999998629
No 2
>d1aopa2 d.58.36.1 (A:346-425) Sulfite reductase, domains 1 and 3 {Escherichia coli [TaxId: 562]}
Probab=8.60 E-value=35 Score=8.66 Aligned_cols=26 Identities=31% Similarity=0.431 Sum_probs=12.0
Q ss_pred CCCCCCCCCCCCCCHH---HHHHHHHCCC
Q ss_conf 0689843369999278---9999998168
Q 001447 11 ITPSSRVLQSPLSDES---IWKRLKEAGL 36 (1075)
Q Consensus 11 ~~~g~rv~~~~~~d~~---iWkr~~eaG~ 36 (1075)
+||.|.+.....++++ ||.+|++.||
T Consensus 47 lT~~Qnlil~~V~~~~~~~i~~~L~~~Gl 75 (80)
T d1aopa2 47 ITANQNLIIAGVPESEKAKIEKIAKESGL 75 (80)
T ss_dssp ECTTSCEEEEEEEGGGHHHHHHHHHHTTT
T ss_pred ECCCCCEEECCCCHHHHHHHHHHHHHCCC
T ss_conf 85888868669898999999999998489
No 3
>d1l5ja3 c.83.1.1 (A:373-862) Aconitase B, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=4.93 E-value=37 Score=8.47 Aligned_cols=11 Identities=9% Similarity=-0.055 Sum_probs=5.4
Q ss_pred CHHHHHHHHHH
Q ss_conf 21699987998
Q 001447 805 RFSWIKRFADL 815 (1075)
Q Consensus 805 ~~SWlrKCTsk 815 (1075)
....+|.++.+
T Consensus 84 ~~~~~r~fa~~ 94 (490)
T d1l5ja3 84 THHTLPDFIMN 94 (490)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
T ss_conf 99999999998
No 4
>d2b3ya2 c.83.1.1 (A:2-630) Iron-responsive element binding protein 1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.63 E-value=37 Score=8.52 Aligned_cols=25 Identities=16% Similarity=0.109 Sum_probs=13.3
Q ss_pred CCHHHHHHHHHHH--HCCCCCCCCCCC
Q ss_conf 6216999879987--322788866566
Q 001447 804 ARFSWIKRFADLV--FKHSGENSVEND 828 (1075)
Q Consensus 804 g~~SWlrKCTskI--Fk~SP~Kk~~~~ 828 (1075)
.++.+|+-|+... |.+.|--.-+.|
T Consensus 151 er~~fl~w~~~~~~~~~~~pPg~GI~H 177 (629)
T d2b3ya2 151 ERFEFLKWGSQAFHNMRIIPPGSGIIH 177 (629)
T ss_dssp HHHHHHHHHHHHSTTEEEECTTSCCHH
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCHHH
T ss_conf 888889999988634622135542566
No 5
>d2fa8a1 c.47.1.23 (A:4-89) Hypothetical protein Atu0228 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=4.15 E-value=25 Score=9.68 Aligned_cols=25 Identities=24% Similarity=0.617 Sum_probs=13.8
Q ss_pred CCCHHHHHHHHHCCC-CHHHHHHHCH
Q ss_conf 992789999998168-9377832069
Q 001447 22 LSDESIWKRLKEAGL-DEVSIKRRDK 46 (1075)
Q Consensus 22 ~~d~~iWkr~~eaG~-De~S~~rkD~ 46 (1075)
+.+.-||.|..+-|| |...++.+=+
T Consensus 51 v~g~li~srk~~ggFPd~kelkq~VR 76 (86)
T d2fa8a1 51 VDGTIIWERKRDGGFPGPKELKQRIR 76 (86)
T ss_dssp ETTEEEEEHHHHTSCCCHHHHHHHHH
T ss_pred ECCEEEEEECCCCCCCCHHHHHHHHH
T ss_conf 89999999635798998899999998
No 6
>d1aopa1 d.58.36.1 (A:81-145) Sulfite reductase, domains 1 and 3 {Escherichia coli [TaxId: 562]}
Probab=3.55 E-value=1.1e+02 Score=5.21 Aligned_cols=31 Identities=19% Similarity=0.351 Sum_probs=18.0
Q ss_pred CCCCCCCCCCCCCCCCCCHH---HHHHHHHCCCC
Q ss_conf 86200689843369999278---99999981689
Q 001447 7 GRLAITPSSRVLQSPLSDES---IWKRLKEAGLD 37 (1075)
Q Consensus 7 ~~l~~~~g~rv~~~~~~d~~---iWkr~~eaG~D 37 (1075)
|.+-+|+-|.+-.-....++ +|+.+.++||+
T Consensus 30 g~i~~TtRQ~iql~~v~~~~l~~v~~~L~~~GL~ 63 (65)
T d1aopa1 30 GSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLD 63 (65)
T ss_dssp CCEEECTTSCEEECCBC-----CHHHHHHHTTCC
T ss_pred CCEEECCCCEEEECCCCHHHHHHHHHHHHHCCCC
T ss_conf 8365637315986798988999999999984797
No 7
>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=3.28 E-value=1.2e+02 Score=4.91 Aligned_cols=34 Identities=15% Similarity=0.022 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHCCCHHHEEHHHHHHHHH
Q ss_conf 9999998887786543100023200213432499
Q 001447 49 LIAYIAKLETEIFEHQHHMGLLILEKKELASKYE 82 (1075)
Q Consensus 49 Lia~IskLE~ElydYQynMGLLLiEkKEwtSK~e 82 (1075)
...++.++...-.++.+|+|..+.....|....+
T Consensus 19 ~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e 52 (145)
T d1zu2a1 19 DAENTYKSNPLDADNLTRWGGVLLELSQFHSISD 52 (145)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999986188310899999999987621333367
No 8
>d1b77a1 d.131.1.2 (A:1-110) gp45 sliding clamp {Bacteriophage RB69 [TaxId: 12353]}
Probab=3.24 E-value=1.2e+02 Score=4.87 Aligned_cols=24 Identities=17% Similarity=0.289 Sum_probs=17.9
Q ss_pred CCCCCCCCCCCCCCEEEECCCCCCCH
Q ss_conf 56785432125998031027995100
Q 001447 846 SRKRQPVRYSFGEPKVILEVPSENEV 871 (1075)
Q Consensus 846 ~~k~q~irya~gepkvilevp~~~~~ 871 (1075)
-+.+..+.|-|.+|-+| |+|+.++
T Consensus 84 ~~~~s~~~y~~adpsiI--~~P~K~i 107 (110)
T d1b77a1 84 ADTRSTVYWPAADKSTI--VFPNKPI 107 (110)
T ss_dssp ECSSEEEEECCBCGGGS--CCCSSCC
T ss_pred CCCCCEEEEECCCCCCE--ECCCCCC
T ss_conf 38972799975993405--4799768
No 9
>d1lmra_ g.3.6.3 (A:) ADO1 {Assassin bug (Agriosphodrus dohrni) [TaxId: 184613]}
Probab=3.09 E-value=1.2e+02 Score=4.82 Aligned_cols=21 Identities=33% Similarity=0.251 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCHHHHHHHCC
Q ss_conf 875445311111135776237
Q 001447 1046 DDVVLPYISEIDGMVQEKQMG 1066 (1075)
Q Consensus 1046 ~~~~lp~~s~~~~~~~e~~~~ 1066 (1075)
++|-||-+|.-+|-...-|+|
T Consensus 2 d~dclprgskclgenkqcc~~ 22 (35)
T d1lmra_ 2 DDDCLPRGSKCLGENKQCCKG 22 (35)
T ss_dssp CSCCCCTTCCCSSCCCCCCTT
T ss_pred CCCCCCCCCCCCCCCHHHCCC
T ss_conf 643345655101654001058
No 10
>d1fiua_ c.52.1.10 (A:) Restriction endonuclease NgoIV {Neisseria gonorrhoeae [TaxId: 485]}
Probab=2.90 E-value=1.4e+02 Score=4.45 Aligned_cols=24 Identities=33% Similarity=0.556 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 433334698999884686666353
Q 001447 98 DRASHLSAIAEARKREESLKKTLG 121 (1075)
Q Consensus 98 EqaAhl~ALsEaeKREEnLkKALg 121 (1075)
+|-+||++|..+-|.---|.-|||
T Consensus 109 eqY~HL~~L~~~~k~~pel~a~LG 132 (286)
T d1fiua_ 109 QQYAHLTALAKAAEENPELAAALG 132 (286)
T ss_dssp GGGTHHHHHHHHHTTCHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHCHHHHHHHC
T ss_conf 368789999999876978998747
Done!