Query 001448
Match_columns 1075
No_of_seqs 167 out of 213
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 01:04:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001448.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001448hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1822 Uncharacterized conser 100.0 6E-154 1E-158 1416.1 80.0 1035 12-1068 1-1201(2067)
2 KOG1822 Uncharacterized conser 99.6 4.4E-11 9.6E-16 152.3 47.5 843 117-1067 64-996 (2067)
3 PF12348 CLASP_N: CLASP N term 98.1 0.00011 2.3E-09 79.7 18.6 131 124-260 71-205 (228)
4 KOG1824 TATA-binding protein-i 98.1 0.064 1.4E-06 67.1 53.4 400 33-467 20-482 (1233)
5 KOG2171 Karyopherin (importin) 98.0 0.046 1E-06 69.9 39.0 470 48-568 67-566 (1075)
6 KOG1824 TATA-binding protein-i 97.9 0.11 2.5E-06 65.0 38.2 523 55-608 426-1097(1233)
7 KOG2171 Karyopherin (importin) 97.7 0.38 8.3E-06 61.9 68.6 444 65-573 37-525 (1075)
8 KOG2023 Nuclear transport rece 97.7 0.009 2E-07 71.9 24.7 308 124-467 376-709 (885)
9 PF01602 Adaptin_N: Adaptin N 97.5 0.059 1.3E-06 65.5 30.2 408 33-527 90-504 (526)
10 PRK13800 putative oxidoreducta 97.5 0.0095 2.1E-07 77.5 24.4 120 104-259 622-741 (897)
11 PRK09687 putative lyase; Provi 97.4 0.0099 2.2E-07 67.0 19.2 198 31-258 8-218 (280)
12 KOG0915 Uncharacterized conser 97.3 0.16 3.5E-06 66.5 30.7 421 13-466 814-1324(1702)
13 PRK09687 putative lyase; Provi 97.3 0.0059 1.3E-07 68.8 16.3 162 62-260 88-249 (280)
14 PF01602 Adaptin_N: Adaptin N 97.2 0.94 2E-05 55.1 40.1 419 85-607 61-484 (526)
15 PF10508 Proteasom_PSMB: Prote 97.0 0.26 5.6E-06 60.3 28.0 279 125-453 57-370 (503)
16 COG5181 HSH155 U2 snRNP splice 96.9 0.47 1E-05 57.3 26.6 329 59-448 599-945 (975)
17 PF10508 Proteasom_PSMB: Prote 96.8 0.34 7.3E-06 59.3 25.9 359 45-463 61-443 (503)
18 KOG0212 Uncharacterized conser 96.7 1.5 3.2E-05 52.9 29.2 377 46-453 24-410 (675)
19 PF05004 IFRD: Interferon-rela 96.7 0.7 1.5E-05 53.0 25.7 242 100-366 40-305 (309)
20 KOG0213 Splicing factor 3b, su 96.5 1.9 4.2E-05 53.3 28.9 335 77-438 728-1131(1172)
21 TIGR02270 conserved hypothetic 96.5 0.067 1.4E-06 63.5 17.0 118 105-259 88-205 (410)
22 PF12755 Vac14_Fab1_bd: Vacuol 96.5 0.012 2.7E-07 55.7 8.8 94 163-260 2-95 (97)
23 PLN03200 cellulose synthase-in 96.5 0.55 1.2E-05 64.9 26.9 335 67-471 533-882 (2102)
24 KOG1248 Uncharacterized conser 96.3 6 0.00013 51.7 53.8 196 103-323 93-295 (1176)
25 PRK13800 putative oxidoreducta 96.3 0.08 1.7E-06 69.1 17.3 158 68-259 688-865 (897)
26 KOG1241 Karyopherin (importin) 96.3 4.9 0.00011 50.3 33.5 181 77-260 102-287 (859)
27 PTZ00429 beta-adaptin; Provisi 96.3 3.9 8.5E-05 52.3 31.3 160 79-260 46-207 (746)
28 COG5181 HSH155 U2 snRNP splice 96.0 0.75 1.6E-05 55.6 21.4 323 80-453 296-637 (975)
29 PLN03200 cellulose synthase-in 96.0 4.1 8.9E-05 56.9 30.8 190 64-261 362-559 (2102)
30 PF12348 CLASP_N: CLASP N term 95.9 0.13 2.8E-06 55.6 14.2 172 40-221 25-208 (228)
31 PF05004 IFRD: Interferon-rela 95.8 0.57 1.2E-05 53.7 19.4 138 124-264 104-260 (309)
32 PF13251 DUF4042: Domain of un 95.8 0.078 1.7E-06 56.0 11.4 156 81-262 2-175 (182)
33 PF12460 MMS19_C: RNAPII trans 95.6 7.5 0.00016 46.4 31.2 205 233-466 191-411 (415)
34 KOG1240 Protein kinase contain 95.4 2.4 5.3E-05 55.1 24.0 276 146-444 424-720 (1431)
35 PTZ00429 beta-adaptin; Provisi 95.2 14 0.00031 47.4 37.6 322 79-454 82-438 (746)
36 KOG1242 Protein containing ada 95.1 12 0.00025 46.1 30.4 373 75-501 106-484 (569)
37 KOG0915 Uncharacterized conser 94.9 21 0.00046 48.0 31.4 345 46-463 1063-1442(1702)
38 PF13646 HEAT_2: HEAT repeats; 94.6 0.15 3.3E-06 46.2 8.1 86 67-172 2-88 (88)
39 KOG1943 Beta-tubulin folding c 94.5 23 0.00049 46.3 32.5 433 10-505 109-616 (1133)
40 KOG0213 Splicing factor 3b, su 94.4 19 0.00041 45.2 31.0 327 79-454 490-833 (1172)
41 PF12755 Vac14_Fab1_bd: Vacuol 94.2 0.24 5.2E-06 47.1 8.4 87 123-211 3-89 (97)
42 cd00020 ARM Armadillo/beta-cat 94.0 0.11 2.5E-06 49.1 6.0 109 148-260 8-119 (120)
43 PF12719 Cnd3: Nuclear condens 93.9 2.7 6E-05 47.8 18.1 133 127-265 4-147 (298)
44 KOG0166 Karyopherin (importin) 93.5 5.4 0.00012 48.5 20.0 279 149-460 68-362 (514)
45 PF12717 Cnd1: non-SMC mitotic 93.4 0.43 9.3E-06 50.1 9.7 93 160-262 1-93 (178)
46 PF13646 HEAT_2: HEAT repeats; 93.3 0.81 1.8E-05 41.4 10.2 86 106-214 2-87 (88)
47 KOG1248 Uncharacterized conser 93.0 25 0.00053 46.4 25.5 205 103-329 697-907 (1176)
48 PF13513 HEAT_EZ: HEAT-like re 92.9 0.067 1.5E-06 44.7 2.1 54 205-259 2-55 (55)
49 KOG1943 Beta-tubulin folding c 92.8 42 0.0009 44.0 37.5 145 77-224 353-505 (1133)
50 KOG1062 Vesicle coat complex A 92.7 37 0.0008 43.2 27.4 187 61-267 216-419 (866)
51 PF13513 HEAT_EZ: HEAT-like re 92.2 0.16 3.4E-06 42.5 3.5 55 120-174 1-55 (55)
52 PF12460 MMS19_C: RNAPII trans 92.1 6.2 0.00013 47.1 18.2 210 48-262 173-395 (415)
53 KOG1820 Microtubule-associated 92.1 5.9 0.00013 51.0 18.6 194 49-260 241-442 (815)
54 KOG1241 Karyopherin (importin) 91.9 45 0.00097 42.2 30.2 334 125-480 345-696 (859)
55 cd00020 ARM Armadillo/beta-cat 91.8 0.55 1.2E-05 44.4 7.3 108 104-218 8-119 (120)
56 PF12074 DUF3554: Domain of un 91.7 31 0.00067 40.0 24.6 71 144-219 19-90 (339)
57 KOG2023 Nuclear transport rece 91.6 5.4 0.00012 49.2 16.4 234 12-261 458-732 (885)
58 KOG2259 Uncharacterized conser 90.9 6.5 0.00014 48.5 16.3 248 63-345 136-456 (823)
59 PF02985 HEAT: HEAT repeat; I 90.7 0.51 1.1E-05 35.0 4.5 30 421-450 1-30 (31)
60 KOG0211 Protein phosphatase 2A 90.4 54 0.0012 42.2 24.5 331 79-448 290-624 (759)
61 PF12717 Cnd1: non-SMC mitotic 89.9 2.4 5.2E-05 44.5 10.5 90 120-220 2-93 (178)
62 TIGR02270 conserved hypothetic 89.2 7.1 0.00015 46.6 14.9 148 66-258 88-235 (410)
63 KOG1949 Uncharacterized conser 89.1 72 0.0016 40.2 25.8 187 60-267 158-372 (1005)
64 COG1413 FOG: HEAT repeat [Ener 88.7 15 0.00032 42.2 16.9 169 40-260 27-208 (335)
65 KOG4653 Uncharacterized conser 88.1 20 0.00042 45.8 17.8 136 128-264 828-967 (982)
66 KOG0212 Uncharacterized conser 87.7 79 0.0017 38.9 27.2 365 92-508 31-413 (675)
67 PF08506 Cse1: Cse1; InterPro 87.7 40 0.00086 39.9 19.6 197 55-256 128-370 (370)
68 PF02985 HEAT: HEAT repeat; I 86.5 1.2 2.6E-05 33.1 4.0 29 993-1021 1-29 (31)
69 PF12719 Cnd3: Nuclear condens 86.2 21 0.00046 40.6 16.0 122 67-193 26-160 (298)
70 KOG0567 HEAT repeat-containing 85.7 25 0.00053 39.4 15.1 88 58-158 15-111 (289)
71 KOG1949 Uncharacterized conser 85.6 15 0.00032 45.8 14.5 215 37-261 75-331 (1005)
72 KOG2259 Uncharacterized conser 85.2 20 0.00043 44.6 15.3 61 197-262 380-440 (823)
73 COG5215 KAP95 Karyopherin (imp 85.0 1.1E+02 0.0023 37.9 32.8 350 102-468 320-730 (858)
74 KOG1820 Microtubule-associated 84.5 20 0.00044 46.2 16.0 94 142-244 366-460 (815)
75 KOG1242 Protein containing ada 84.4 1.2E+02 0.0025 37.8 24.7 364 65-467 135-545 (569)
76 KOG1517 Guanine nucleotide bin 84.3 20 0.00044 46.5 15.4 210 15-263 511-734 (1387)
77 KOG2025 Chromosome condensatio 84.3 32 0.0007 43.1 16.6 103 148-256 86-188 (892)
78 KOG2160 Armadillo/beta-catenin 84.3 25 0.00053 40.9 15.0 85 388-474 92-176 (342)
79 PF00514 Arm: Armadillo/beta-c 83.4 1.9 4.1E-05 33.9 4.2 29 420-448 12-40 (41)
80 PF03378 CAS_CSE1: CAS/CSE pro 83.0 21 0.00046 43.1 14.6 257 51-327 13-279 (435)
81 KOG1020 Sister chromatid cohes 82.2 2.2E+02 0.0047 39.2 27.3 123 128-260 797-920 (1692)
82 PF08389 Xpo1: Exportin 1-like 82.2 12 0.00026 37.1 10.5 145 78-256 1-148 (148)
83 PF11865 DUF3385: Domain of un 81.5 14 0.0003 38.4 10.9 111 63-176 9-157 (160)
84 PF10363 DUF2435: Protein of u 80.0 8.5 0.00018 36.3 7.9 70 188-260 2-71 (92)
85 KOG4653 Uncharacterized conser 79.9 28 0.00061 44.5 14.3 142 77-220 818-965 (982)
86 KOG4535 HEAT and armadillo rep 79.9 1.2E+02 0.0027 36.7 18.6 139 120-260 10-178 (728)
87 KOG2956 CLIP-associating prote 79.0 1.1E+02 0.0023 37.1 17.9 155 96-260 317-476 (516)
88 KOG2025 Chromosome condensatio 78.9 70 0.0015 40.3 16.8 100 65-171 82-188 (892)
89 KOG1525 Sister chromatid cohes 78.7 80 0.0017 42.9 18.8 202 15-220 96-330 (1266)
90 PF11698 V-ATPase_H_C: V-ATPas 77.3 8 0.00017 38.2 7.1 72 377-449 43-115 (119)
91 PF13251 DUF4042: Domain of un 76.3 28 0.00061 37.0 11.4 170 20-221 5-176 (182)
92 KOG1240 Protein kinase contain 76.0 56 0.0012 43.4 15.5 213 40-260 483-724 (1431)
93 KOG2933 Uncharacterized conser 75.7 18 0.0004 41.2 10.2 120 87-217 113-232 (334)
94 PF11698 V-ATPase_H_C: V-ATPas 75.4 8.3 0.00018 38.1 6.6 72 102-176 42-115 (119)
95 KOG2032 Uncharacterized conser 74.6 26 0.00057 42.2 11.5 104 117-221 269-373 (533)
96 COG5096 Vesicle coat complex, 74.4 69 0.0015 41.1 15.8 120 82-220 36-157 (757)
97 KOG2956 CLIP-associating prote 74.4 78 0.0017 38.2 15.2 154 145-328 327-485 (516)
98 KOG1077 Vesicle coat complex A 74.4 1.9E+02 0.004 36.8 18.7 224 820-1056 105-398 (938)
99 KOG1059 Vesicle coat complex A 73.8 80 0.0017 39.9 15.5 158 63-238 255-419 (877)
100 COG1413 FOG: HEAT repeat [Ener 73.2 13 0.00027 42.7 8.7 92 146-260 42-134 (335)
101 smart00638 LPD_N Lipoprotein N 73.0 71 0.0015 39.7 15.7 107 123-255 463-572 (574)
102 PF08064 UME: UME (NUC010) dom 71.5 24 0.00053 34.1 8.8 70 159-236 27-96 (107)
103 KOG1062 Vesicle coat complex A 71.3 3.1E+02 0.0067 35.4 30.4 164 63-261 141-323 (866)
104 COG5096 Vesicle coat complex, 70.6 1.2E+02 0.0026 39.0 16.7 136 313-467 38-175 (757)
105 PF01347 Vitellogenin_N: Lipop 68.8 3.1E+02 0.0067 34.4 21.1 219 43-321 349-587 (618)
106 KOG1077 Vesicle coat complex A 67.8 3.5E+02 0.0076 34.6 20.8 219 31-264 177-435 (938)
107 PF08167 RIX1: rRNA processing 66.4 1.1E+02 0.0025 31.7 13.2 117 104-225 26-149 (165)
108 KOG0166 Karyopherin (importin) 65.1 26 0.00056 42.8 9.1 193 65-262 195-394 (514)
109 PF10363 DUF2435: Protein of u 64.5 51 0.0011 31.1 9.1 79 377-458 3-81 (92)
110 PF12830 Nipped-B_C: Sister ch 64.2 1.1E+02 0.0023 32.6 12.7 110 61-176 6-122 (187)
111 KOG0392 SNF2 family DNA-depend 62.8 1E+02 0.0022 41.4 13.8 123 132-260 798-924 (1549)
112 PF05918 API5: Apoptosis inhib 61.6 4.1E+02 0.0089 33.3 19.7 139 103-260 20-161 (556)
113 smart00185 ARM Armadillo/beta- 60.4 10 0.00022 28.9 3.2 29 420-448 12-40 (41)
114 PF08713 DNA_alkylation: DNA a 60.0 1.4E+02 0.0031 31.6 13.0 154 75-260 28-183 (213)
115 KOG2011 Sister chromatid cohes 59.6 5.8E+02 0.012 34.3 20.0 135 116-265 297-439 (1048)
116 COG5218 YCG1 Chromosome conden 59.4 4.5E+02 0.0097 33.0 18.4 160 79-252 25-190 (885)
117 COG5215 KAP95 Karyopherin (imp 59.3 4.5E+02 0.0097 32.9 40.9 182 75-260 104-291 (858)
118 KOG1991 Nuclear transport rece 59.2 5.6E+02 0.012 34.0 31.5 122 392-530 431-558 (1010)
119 KOG2160 Armadillo/beta-catenin 58.6 2.1E+02 0.0046 33.4 14.4 175 79-260 51-239 (342)
120 KOG1991 Nuclear transport rece 58.6 3.6E+02 0.0078 35.6 17.5 139 79-220 386-533 (1010)
121 KOG1060 Vesicle coat complex A 55.9 5.8E+02 0.012 33.2 31.7 357 71-469 42-478 (968)
122 cd00256 VATPase_H VATPase_H, r 55.9 19 0.00041 43.3 5.7 83 82-176 341-425 (429)
123 KOG2022 Nuclear transport rece 55.6 2.5E+02 0.0054 36.6 15.3 154 305-469 438-596 (982)
124 PF12765 Cohesin_HEAT: HEAT re 55.3 17 0.00038 29.1 3.7 41 975-1015 1-41 (42)
125 KOG1020 Sister chromatid cohes 54.2 2.5E+02 0.0055 38.6 15.5 116 117-246 827-942 (1692)
126 KOG4535 HEAT and armadillo rep 54.1 1.2E+02 0.0027 36.7 11.6 137 81-221 12-181 (728)
127 KOG0414 Chromosome condensatio 53.7 6.3E+02 0.014 34.2 18.7 110 150-262 315-429 (1251)
128 KOG1078 Vesicle coat complex C 52.9 3.3E+02 0.0071 35.1 15.5 70 956-1028 249-318 (865)
129 COG5218 YCG1 Chromosome conden 51.4 5.6E+02 0.012 32.2 16.6 48 159-211 144-191 (885)
130 PF03224 V-ATPase_H_N: V-ATPas 51.3 83 0.0018 36.0 10.0 135 39-176 30-179 (312)
131 KOG1078 Vesicle coat complex C 51.0 6.8E+02 0.015 32.5 20.1 311 68-450 206-533 (865)
132 PF00514 Arm: Armadillo/beta-c 51.0 26 0.00056 27.4 4.0 29 992-1020 12-40 (41)
133 PF04826 Arm_2: Armadillo-like 49.1 91 0.002 34.9 9.5 90 965-1054 107-199 (254)
134 PF09450 DUF2019: Domain of un 48.6 4.2 9E-05 39.3 -1.0 36 422-460 49-84 (106)
135 KOG2062 26S proteasome regulat 48.5 68 0.0015 40.6 8.8 93 155-262 527-619 (929)
136 cd00256 VATPase_H VATPase_H, r 48.3 5.8E+02 0.013 31.0 20.3 119 141-261 47-173 (429)
137 smart00638 LPD_N Lipoprotein N 48.2 6.4E+02 0.014 31.4 22.1 218 43-321 313-543 (574)
138 KOG2933 Uncharacterized conser 48.1 1.5E+02 0.0033 34.2 10.8 159 92-260 73-233 (334)
139 PF08569 Mo25: Mo25-like; Int 47.9 5.2E+02 0.011 30.3 18.9 49 422-471 256-304 (335)
140 PF08064 UME: UME (NUC010) dom 47.4 1E+02 0.0022 29.8 8.4 72 106-180 14-87 (107)
141 COG5240 SEC21 Vesicle coat com 47.3 2.6E+02 0.0056 34.8 13.0 163 82-259 354-553 (898)
142 KOG0211 Protein phosphatase 2A 46.8 7.9E+02 0.017 32.1 29.1 345 56-453 232-590 (759)
143 KOG4035 Coeffector of mDia Rho 46.6 5.7E+02 0.012 30.4 16.3 121 132-264 234-363 (411)
144 PF14222 MOR2-PAG1_N: Cell mor 46.4 47 0.001 41.4 7.3 75 985-1060 464-549 (552)
145 PF08569 Mo25: Mo25-like; Int 46.2 5.5E+02 0.012 30.1 22.2 142 146-321 124-284 (335)
146 PF11865 DUF3385: Domain of un 45.6 2.8E+02 0.0061 28.7 11.8 43 145-192 8-51 (160)
147 KOG1837 Uncharacterized conser 44.6 1.3E+02 0.0028 41.3 10.9 112 64-180 1502-1615(1621)
148 PLN03076 ARF guanine nucleotid 44.6 1.2E+03 0.026 33.6 24.3 203 36-242 1154-1400(1780)
149 PF12530 DUF3730: Protein of u 44.2 4.7E+02 0.01 28.7 21.8 196 30-247 9-218 (234)
150 PF08167 RIX1: rRNA processing 43.7 3.9E+02 0.0085 27.7 13.1 91 5-100 13-103 (165)
151 PF08389 Xpo1: Exportin 1-like 43.5 87 0.0019 30.8 7.6 123 306-444 3-148 (148)
152 PF04118 Dopey_N: Dopey, N-ter 43.5 5.3E+02 0.012 29.8 14.7 123 127-258 118-251 (307)
153 PF13001 Ecm29: Proteasome sta 43.1 3.7E+02 0.008 33.2 14.3 135 120-260 335-487 (501)
154 PF03224 V-ATPase_H_N: V-ATPas 43.1 1.6E+02 0.0035 33.7 10.6 118 391-518 69-197 (312)
155 PF01347 Vitellogenin_N: Lipop 42.8 49 0.0011 41.5 6.9 136 103-255 431-583 (618)
156 PF14664 RICTOR_N: Rapamycin-i 42.7 1.3E+02 0.0029 35.6 10.0 68 971-1039 86-155 (371)
157 PF13001 Ecm29: Proteasome sta 42.4 56 0.0012 40.2 7.1 119 143-264 315-446 (501)
158 smart00185 ARM Armadillo/beta- 42.2 38 0.00081 25.7 3.7 29 993-1021 13-41 (41)
159 PF01465 GRIP: GRIP domain; I 41.6 31 0.00067 28.4 3.2 33 228-260 3-35 (46)
160 KOG2062 26S proteasome regulat 40.8 4.7E+02 0.01 33.7 14.2 123 170-323 497-621 (929)
161 PF14500 MMS19_N: Dos2-interac 39.7 5.5E+02 0.012 28.9 13.8 174 79-263 13-202 (262)
162 PF08161 NUC173: NUC173 domain 39.2 59 0.0013 35.1 5.9 54 126-179 20-73 (198)
163 smart00802 UME Domain in UVSB 39.0 1.6E+02 0.0034 28.7 8.1 72 106-180 14-87 (107)
164 cd03569 VHS_Hrs_Vps27p VHS dom 38.5 2.5E+02 0.0054 28.6 10.0 95 371-467 35-133 (142)
165 COG5537 IRR1 Cohesin [Cell div 38.3 9.3E+02 0.02 30.5 17.4 176 116-323 285-471 (740)
166 PF14222 MOR2-PAG1_N: Cell mor 37.5 9.3E+02 0.02 30.2 29.4 399 39-468 9-518 (552)
167 PF04826 Arm_2: Armadillo-like 37.1 5E+02 0.011 29.2 12.9 115 355-473 92-207 (254)
168 KOG1061 Vesicle coat complex A 37.0 3.7E+02 0.0079 34.6 12.7 151 56-220 113-269 (734)
169 smart00755 Grip golgin-97, Ran 36.4 49 0.0011 27.3 3.6 32 228-260 2-33 (46)
170 cd07064 AlkD_like_1 A new stru 36.2 5.8E+02 0.013 27.5 16.7 173 53-260 2-178 (208)
171 cd03572 ENTH_epsin_related ENT 36.1 3.5E+02 0.0075 27.1 10.1 85 131-220 19-120 (122)
172 KOG0414 Chromosome condensatio 36.0 1.2E+03 0.027 31.6 17.4 170 66-243 268-454 (1251)
173 PF05536 Neurochondrin: Neuroc 35.7 9.8E+02 0.021 29.9 26.7 250 80-345 19-288 (543)
174 COG5116 RPN2 26S proteasome re 34.5 1.1E+02 0.0023 37.8 7.4 96 151-261 520-615 (926)
175 smart00802 UME Domain in UVSB 34.2 1.3E+02 0.0029 29.2 6.8 70 395-466 31-101 (107)
176 PF06371 Drf_GBD: Diaphanous G 33.6 56 0.0012 34.0 4.6 59 201-260 127-186 (187)
177 KOG1993 Nuclear transport rece 32.1 1.3E+03 0.028 30.3 18.1 161 161-346 501-666 (978)
178 KOG0567 HEAT repeat-containing 31.8 2.8E+02 0.006 31.5 9.4 82 108-211 189-272 (289)
179 KOG1967 DNA repair/transcripti 30.9 4.6E+02 0.01 34.5 12.3 132 122-258 887-1021(1030)
180 COG5098 Chromosome condensatio 30.9 7.7E+02 0.017 31.7 13.7 100 122-225 315-420 (1128)
181 PF08623 TIP120: TATA-binding 30.6 4E+02 0.0087 28.1 10.1 113 77-193 39-165 (169)
182 COG2733 Predicted membrane pro 29.7 1E+03 0.023 28.5 17.1 203 31-260 106-329 (415)
183 PF08623 TIP120: TATA-binding 29.3 3.6E+02 0.0077 28.5 9.5 73 971-1044 45-119 (169)
184 KOG1061 Vesicle coat complex A 28.6 8.7E+02 0.019 31.4 14.0 104 145-260 84-188 (734)
185 PF07571 DUF1546: Protein of u 27.2 2.7E+02 0.0058 26.2 7.4 60 159-220 18-79 (92)
186 PF12612 TFCD_C: Tubulin foldi 27.0 7.8E+02 0.017 26.1 14.2 154 188-370 6-165 (193)
187 KOG2213 Apoptosis inhibitor 5/ 26.6 8.2E+02 0.018 29.4 12.4 156 86-258 8-177 (460)
188 PF12765 Cohesin_HEAT: HEAT re 26.2 79 0.0017 25.4 3.1 41 212-255 1-41 (42)
189 KOG1851 Uncharacterized conser 25.5 6.5E+02 0.014 35.2 12.7 181 120-329 1501-1687(1710)
190 PF03378 CAS_CSE1: CAS/CSE pro 25.1 1.3E+03 0.028 28.0 17.4 223 325-573 18-251 (435)
191 smart00543 MIF4G Middle domain 24.9 7.7E+02 0.017 25.3 11.9 125 25-154 41-168 (200)
192 PF10521 DUF2454: Protein of u 24.6 7.3E+02 0.016 28.0 11.8 82 139-220 111-204 (282)
193 cd03561 VHS VHS domain family; 24.2 5.9E+02 0.013 25.4 9.8 82 371-454 31-117 (133)
194 KOG1851 Uncharacterized conser 23.9 2.2E+03 0.048 30.4 27.8 146 355-519 1508-1654(1710)
195 PF12830 Nipped-B_C: Sister ch 23.9 2.1E+02 0.0047 30.3 6.9 62 965-1028 20-81 (187)
196 PF10350 DUF2428: Putative dea 23.6 9.3E+02 0.02 26.8 12.2 112 45-158 123-251 (255)
197 cd03567 VHS_GGA VHS domain fam 23.5 6.2E+02 0.013 25.8 9.8 90 374-467 35-132 (139)
198 PRK10803 tol-pal system protei 23.4 1.1E+03 0.023 26.5 13.8 129 56-197 85-246 (263)
199 cd06561 AlkD_like A new struct 23.3 2.2E+02 0.0048 29.7 6.9 67 390-461 116-182 (197)
200 PF08161 NUC173: NUC173 domain 23.0 1.3E+02 0.0028 32.5 5.0 59 889-950 18-76 (198)
201 KOG0946 ER-Golgi vesicle-tethe 22.6 7.9E+02 0.017 32.0 12.0 192 849-1073 27-257 (970)
202 PF05918 API5: Apoptosis inhib 22.6 1.3E+02 0.0029 37.3 5.7 60 410-469 49-108 (556)
203 COG5064 SRP1 Karyopherin (impo 22.5 2.1E+02 0.0045 33.4 6.6 77 355-437 218-302 (526)
204 PF12783 Sec7_N: Guanine nucle 22.4 4.5E+02 0.0097 27.0 8.9 68 120-193 87-157 (168)
205 PF01603 B56: Protein phosphat 21.8 8.8E+02 0.019 29.1 12.3 148 311-462 107-260 (409)
206 PF11707 Npa1: Ribosome 60S bi 21.3 4.2E+02 0.0092 30.7 9.2 103 147-254 56-180 (330)
207 PF12783 Sec7_N: Guanine nucle 21.1 7.1E+02 0.015 25.6 10.0 97 121-220 37-147 (168)
208 KOG2002 TPR-containing nuclear 20.8 2.1E+03 0.046 29.0 17.1 167 70-258 520-728 (1018)
209 PF07571 DUF1546: Protein of u 20.5 2.2E+02 0.0049 26.7 5.5 53 122-174 22-76 (92)
210 PF05997 Nop52: Nucleolar prot 20.5 4E+02 0.0086 29.1 8.2 67 152-220 5-73 (217)
211 COG5116 RPN2 26S proteasome re 20.4 4.1E+02 0.0089 33.1 8.7 67 142-210 616-684 (926)
212 KOG1060 Vesicle coat complex A 20.2 1E+03 0.022 31.0 12.3 150 89-260 381-532 (968)
No 1
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=6.4e-154 Score=1416.08 Aligned_cols=1035 Identities=31% Similarity=0.446 Sum_probs=897.7
Q ss_pred CcccchhHHHHHHHHhhhccCCCCchhHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHhhcCCChhHhHHHHHHHHH
Q 001448 12 LSRFGVLVAQLESIVASASQQSPDPLLCFDLLSDLISAIDEEPKESILLWQRKCEDALYSLLILGARRPVRHLASVAMGR 91 (1075)
Q Consensus 12 ~~~~~~~~a~le~~~~~~~~~~~~~~~~~~wL~~L~~~l~~~~k~di~~~Q~~l~~~L~~ll~~~~g~P~R~l~a~cl~~ 91 (1075)
+++++++++++|++++...|+ ||+|+|||++++++.++..+|+|++..|++++++|.+.+..++|||+|+|++.|+++
T Consensus 1 Ms~~~~l~~~e~s~~~~~~~k--~p~~~~e~l~~l~~~l~~~~ke~~l~tQ~~~~~~l~s~~~~~~~~p~rkL~s~~i~r 78 (2067)
T KOG1822|consen 1 MSLASLLLLNETSLVASPEQK--RPVFCLEWLRYLERNLNEEQKEDLLVTQLKLEQQLISRLTNGAGPPTRKLISVAIAR 78 (2067)
T ss_pred CCcchhhHhhHHHhhcchhhc--ccHHHHHHHHHHHhcCCcchhHHHHHHhHHHHHHHHHHHccCCCchhHHHHHHHHHH
Confidence 368999999999999999888 999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccCCchhhHHhHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHhhHhhcCHHHHHHHHHHHhccCcHHHHHHHHHHH
Q 001448 92 IISKGDNISVYSRVSSLQGFLSDGKKSEPQKVAGAAQCLGELYRQFGRRITSGLLETTIIAAKLMKFNEEFVRQEALLLL 171 (1075)
Q Consensus 92 ly~~GD~~~lf~~vn~l~~~l~~~k~~s~~~~~aA~~cLG~l~~~~G~~l~s~~~e~~~~llK~lK~~~~~~R~~~l~~L 171 (1075)
+|+.||++++|.++|.|+|.+++++.+++..+.+|..|+|++|+.+|+++++..+++++++.|+.|+|++..|.++|.++
T Consensus 79 l~~~gd~f~~~~~l~~c~d~l~d~~~~~~q~k~~a~~~l~~~y~~~g~~~~~~~edt~~if~~~~k~n~s~~~~~i~~~l 158 (2067)
T KOG1822|consen 79 LISNGDSFSLYSRLNSCNDFLSDGSPSDPQRKLAALSCLGSLYEHYGRMIGRGLEDTVQIFTKLVKTNESFVRQEIMITL 158 (2067)
T ss_pred HHhccchhhHHHHHHHhhhhhhcCCCccHHHHHhhccchHHHHHHhhHhhcchHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 99999999999999999999996665666677899999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCC-chhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhcCCCcccchhhhHhhHHhhhccCCChhHHH
Q 001448 172 QNALEGSGGSA-AASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGGPCLGVGELDNSATHCVKAIEDPIASVRD 250 (1075)
Q Consensus 172 ~kil~g~g~~~-~~~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~~~~~~~~dlE~l~sl~~K~le~s~~~vR~ 250 (1075)
.+.++|+|+.. +...|++||| +.|+++.||++.||.+|++|+.++.+.+++.+.++|+|+..++|||++|++++++|+
T Consensus 159 ~~~~~~~g~~s~~~~~~k~i~l-~~k~~lld~s~~v~iaa~rc~~a~s~~~~~~~~~Sele~~~s~cfk~~~~s~~~~r~ 237 (2067)
T KOG1822|consen 159 HNALKGMGGTSAATATHKAIRL-IAKNSLLDRSFNVKIAAARCLKAFSNLGGPGLGTSELETLASYCFKGIEISNSEVRC 237 (2067)
T ss_pred HHHHHHhccchHHHHHHHHHHH-HHhhhhhhhhHHHHHHhHHHHHHHHhhcCccccchhhhhhcceeeeeeccchHHHHH
Confidence 99999999655 6788999999 699999999999999999999999998766667999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCCCCcCCCCCCCCCCC--CCChhHHHHHHhhhhhc--------ccCC-------CCcchhHHHHHH
Q 001448 251 AFAEALGSLLALGMNPQAQVQPKGKGPFPP--AKKLEGGLQRHLALPFT--------RANG-------AKSKNMRVNLTL 313 (1075)
Q Consensus 251 a~A~~La~lLa~~~~~~~~~~~~~k~~~~~--~k~l~~~l~~~Ls~~f~--------k~~~-------~~~r~~R~Gv~~ 313 (1075)
++|+++|++++..+.+....++++++|..+ .+..++.+. ....+|. ++.+ ++.+++|+|++.
T Consensus 238 a~a~~~~~Lla~~~~~~s~~~~~~~g~~~pa~~~~~~~~L~-~~~~~fl~~~~~~~l~~~~~i~~~s~~~~~~~r~g~s~ 316 (2067)
T KOG1822|consen 238 AVAEFLGSLLALGMHPESAVQKAKKGPFVPAKDKNTREGLA-LSWSGFLRGGRIRFLKGDSEILVGSSPVMRDVRVGSSI 316 (2067)
T ss_pred HHHHHHHHHHhccCCchhhhhhcccCCCCCccchhHHHHHH-HHHHHHHhcchhhhhccchhheecccchhhhhhcchhH
Confidence 999999999998866665556666665443 334466665 4444444 4432 357999999999
Q ss_pred HHHHHHHHhcccccCCCcchhHHHHHHHHHhcc--CCCCCHH------HHHHHHHHHHHhhhccCChHHHHHHHHHHHhh
Q 001448 314 SWVYFLQAIRLKYFHPDSELQDYALQVMDMLRA--DIFVDSH------ALACVLYILRIGVTDQMTEPTQRSFLVFLGKQ 385 (1075)
Q Consensus 314 ayv~fl~~lg~~wle~~~~~~~~~~~i~~ll~~--~~~~~~~------~r~~v~~ILr~~v~~~L~E~~Q~~~~~~l~~~ 385 (1075)
||+.|++.+|..|++. ++..+-.|++++... .++-..+ .|+|+.|++|++||.++||++|...+..++..
T Consensus 317 ~~v~~v~~~g~~~l~~--~~~a~~~~~~dl~~~~~~~~~~~~~~~~t~~r~~~~Fl~r~~Ig~~l~~~A~~~~~~~~~~~ 394 (2067)
T KOG1822|consen 317 CYVVFVQSLGLAWLEK--NLSAFRAHILDLVLLGEVPHETSEFSDATLSRYLISFLLRVTIGALLLEKAQALQCKEIVGL 394 (2067)
T ss_pred HHHHHHHHhhhhccch--hHHHHHhHHHhhhhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 9999999999999987 566666699999884 2332222 58999999999999999999997776666622
Q ss_pred c----c-----c------C------CCChhHHHHHHHHHHHHHHHhCCCchh----hHHHHHHHHHHHhcCCChHHHHHH
Q 001448 386 L----Q-----A------V------DASPFMKIAALRTLSYTLKTLGEVPSE----FKEVLDSTVVAAVSHSSQLVRIEA 440 (1075)
Q Consensus 386 ~----~-----~------~------~~s~~~lv~aL~el~~Ll~~LGsa~~~----~~~~l~d~L~~lL~hps~svRi~A 440 (1075)
. . + . ..+.|+.+++++++.+++.++|++... ...++.|..+..+.||..++|++|
T Consensus 395 ~~~~~~~~~~~~~~~se~~d~~~~~~~s~~~~v~~l~~l~s~~~gl~tt~~~~l~ds~l~i~~~~~~~l~~p~as~r~~a 474 (2067)
T KOG1822|consen 395 LSKYVTSLDADRESNSEKGDKLKEDLASQHLQVAALAELSSLSPGLGTTAPSLLPDSTLQILDLILTELRHPVASARLEA 474 (2067)
T ss_pred HHHHHhHHhhhhhhhhhccccchHHHHHHHHHHHHHHHHHhhccccccchhhhhHHHHHHHHHHHHHHHcCchHHHHHHH
Confidence 1 1 0 1 125689999999999999999998753 456799999999999999999999
Q ss_pred HHHHHHHHHhCCcchhhHHHHHHHHHHhhhhhcccccCCcccchhhhhchHHHHHHHHHhh-cCCCCCccCCchhHHHHH
Q 001448 441 ALTLRALAEVDPTCVSGLITYGVTTLNALRENVSFEKGSSLMVELDSLHGQATVVAALIFI-SPKLPLGYPARLPKLVLE 519 (1075)
Q Consensus 441 A~cLr~~~~a~Ps~l~~ll~~~~~~L~~~~~~l~~~~~~~~~~~~~~~~G~a~aLAALl~~-~~~~pLgvp~~~~~~V~~ 519 (1075)
||||||++.++|.++++++++|+++++.+.++.+ ..++.+.|||+++|||+++ +..|||||||.++++||+
T Consensus 475 aw~Lrcll~~~P~~l~p~id~~~~~~e~~~kq~~--------s~~~~~sg~S~aiaaLl~~~~~~~plgIp~~k~~~v~~ 546 (2067)
T KOG1822|consen 475 AWLLRCLLNAMPSYLTPTIDRFLERLEHLFKQLR--------SSPEAVSGFSFAIAALLAGVVVSCPLGIPHAKGLKVLN 546 (2067)
T ss_pred HHHHHHHHhcCchhhhHHHHHHhccchhHHHHhh--------ccHHHHHHHHHHHHHHHhhhhhcCCCccchhhHHHHHH
Confidence 9999999999999999999999999888876543 3478889999999999999 999999999999999999
Q ss_pred HHHHhhhccCCchhhHHHHHHHHHHHHHHhhccCChhhHhhcHHHHHHHHHhhcCCCchhhh--hhccc---hhHHHHHH
Q 001448 520 VSKKMLTESSRNTLAATVEKEAGWLLLSSLLASMPKEELEDQVFDILSLWATLFSGNAEHII--KQHGD---LTSKICVL 594 (1075)
Q Consensus 520 ~A~~LLk~~~~~~~~a~~~~qagWiLi~sLmtl~g~~~Vk~hlsqLLlLWk~~l~~s~k~~~--~~~~e---~~~~L~~r 594 (1075)
+|++|||+++||++.+.+|+|+||+||++||+| ||+|+|+|+||||+||||+|||++|+.| +.||| |+..++.|
T Consensus 547 ~Aedllkt~aqnsr~s~~kt~~gWlLi~aLmtl-gpsv~k~~lprllLlWk~~f~rs~ke~ese~~rgdaFtwq~tl~~~ 625 (2067)
T KOG1822|consen 547 FAEDLLKTAAQNSRLSLAKTLAGWLLISALMTL-GPSVVKLQLPRLLLLWKNAFPRSPKELESEESRGDAFTWQLTLEGR 625 (2067)
T ss_pred HHHHHHHhhccChhHHHHHHHhhHHHHHHHHhc-CCcccHHHHHHHHHHHHHhcccCcccccccccccchHHHHHHHHhh
Confidence 999999999999999999999999999999996 7899999999999999999999998775 44676 88889999
Q ss_pred HHHHHHHHHHHHhcCCCCCCCccchhhhHHHHHHHHHHHHHH---HhhhhCCCCchhHHHHHHH--HHHHHhcCCCCCCC
Q 001448 595 STAVDALTAFVRCFLSPDAANSGILLQPVMVYLSRALSYIST---IAAKELPNIKPAMDIFIIR--TLIAYQSLPDPVSY 669 (1075)
Q Consensus 595 ~~AL~aL~sFL~~~~~~~lt~~~~Ll~~~~~~L~~aL~~l~~---i~~~~~~~lk~~~~l~r~R--iLq~y~~L~~~~~~ 669 (1075)
++||+.|.+|..++ +++.+++.. .+...-+++++.+++. ..+.|+..+|....++|.| +++.- +|.|+..|
T Consensus 626 agaL~~m~~~~s~~--~~~~~e~~~-~k~~~p~~~~l~lls~v~~~lk~yg~~~~~sa~lvrIr~~l~e~l-~llp~~~~ 701 (2067)
T KOG1822|consen 626 AGALSYMKSFVSHK--PDSLTESIT-LKFLTPIECALSLLSQVPSVLKAYGNQLKRSALLVRIRAGLYELL-LLLPPSSY 701 (2067)
T ss_pred hhHHHHHHHHhccC--cchhhHHHH-HhcCCcHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHH-HhCCchhh
Confidence 99999999999973 444344421 1122223777777655 4578999999888888765 54433 34567899
Q ss_pred CCChHHHHHHHHhhcC--CC-CcccchhhhhhhhccccC-cCCCCCCCCCh--HHHHHhh-hcCCCCCCC---Cc-ccc-
Q 001448 670 KSDHPQLIKLCTTPYR--DA-SACEESSCLRLLLDKRDA-WLGPWIPGRDW--FEDELCA-FQGGKDGLM---PC-VWE- 737 (1075)
Q Consensus 670 ~~~~~~LL~~~v~~Fs--dp-~~~~~ssll~sl~~~~d~-~lg~w~~~~d~--ie~~L~~-~~~~~~g~l---p~-~~~- 737 (1075)
+.++.++++.++++|+ |+ ...+++++++++|+.+|+ +.|+|.+++|+ +|+++.. ......|.+ |+ .+.
T Consensus 702 e~~l~~~lr~lvad~tm~dn~~~~ttt~ll~s~~~~~~~ii~g~~i~~t~~~~~e~q~~~~~~~i~~g~le~d~s~ll~~ 781 (2067)
T KOG1822|consen 702 EGSLTALLRKLVADLTMSDNLSANTTTELLRSLAFGDDSIITGPWIQATDHRSAEDQLLTPGSDIFSGALEEDLSSLLSL 781 (2067)
T ss_pred HHHHHHHHHHHHHhhcccccchhHHHHHHhhhhhccCcccccChhhhhccchhHHHhhccCccccceeeeecCchhhhHH
Confidence 9999999999999998 55 456678999999999998 69999999997 8999533 333334433 22 221
Q ss_pred --cc-cCCCCCCCchhHHHHHHHHHHHHHHhccCCchhHhHHHHHHHHHHHcccchhHHHHHHHHHHH--HHHHHHHHHh
Q 001448 738 --NE-VSSFPQPETIKKTLVNQMLLCFGIMFASQHSSGMLSLLGIIEQCLKAGKKQSWHAASVTNICV--GLLAGLKALL 812 (1075)
Q Consensus 738 --~~-~~~~p~p~p~~tsvVdaai~LFg~vFp~~~~k~q~s~LE~l~~~i~~~k~~~R~~Ai~vNv~~--All~aLk~~~ 812 (1075)
.. ...+|+|+|+++++||+|++|||.+|||+++|||+||+|||.+||++.|+. |+++|++|+++ |++++||.++
T Consensus 782 ~s~~g~~~~p~~lp~~ls~Idta~~lfg~vfp~v~~k~~~~ile~~~esi~~sk~~-r~qsV~~~a~t~~al~s~lk~l~ 860 (2067)
T KOG1822|consen 782 ISAAGLSSVPYALPLALSLIDTAVSLFGSVFPHVNNKIRLSILEHFPESIKQSKSA-RQQSVQVNAVTWQALLSALKYLA 860 (2067)
T ss_pred HHhhcccCCCCCCcchhHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHhhhhccc-hhHHHHHHHHHHHHHHHHHHHHH
Confidence 12 336899999999999999999999999999999999999999999999988 89999999999 9999999999
Q ss_pred hhCC--CCCChHHHHHHHHHHHHHHhcCCccHHHHHHH-----------------------HhccccccCCchhhHHHHH
Q 001448 813 NLRP--QTLGSEVLNSIQAIFLSILAEGDICASQRRAL-----------------------LLGDLTVVTDANYAGSIAL 867 (1075)
Q Consensus 813 ~~~~--~~~~~~v~~~~~~ll~~~l~~~d~~~~~r~aa-----------------------lv~~iv~~~dp~~Rag~aL 867 (1075)
+.++ ..++++|.+...+++.+-+..++| ..||++ +++++...+||..|+|+.+
T Consensus 861 e~~~~~~lg~e~v~~~~~~l~~~sl~~~~p--~~rc~~~ea~arLaq~v~~~~f~a~~aq~~fdklas~~d~i~R~ghsl 938 (2067)
T KOG1822|consen 861 EFKGATSLGPEEVRSSALTLIVNSLINPNP--KLRCAAAEALARLAQVVGSAPFVASLAQNSFDKLASARDPITRTGHSL 938 (2067)
T ss_pred hcccccccCHHHHHHHHHHHHhhhhccCCh--HHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 9888 447899999999999999999985 466665 5566778899999999999
Q ss_pred HHHHHHHhhCCcccccccch-----------------hHHHHHHHHHHHHHhcCCcccchhhHHHHHHHHHhccCCCCch
Q 001448 868 AIGCIHRSAGGMALSSLVPA-----------------TMWSLHGLLLTIEAAGFSFVSHVQATLGLAMEILLSEENGWVD 930 (1075)
Q Consensus 868 ALG~I~r~vGgmas~~Ll~~-----------------~~WaL~aL~li~dsaG~~f~~~v~stL~ll~~lll~~~~~~~~ 930 (1075)
|+|||||||||+++|+.+++ +.|+||||++++|++|++|+.||++||+++.++++++|+++++
T Consensus 939 alg~lhkyvgs~~s~qhl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~lLls~p~~~~e 1018 (2067)
T KOG1822|consen 939 ALGCLHKYVGSIGSGQHLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLKLLLSVPTSHVE 1018 (2067)
T ss_pred HHHHHHHhccCCCCchhcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHHHcCCCCcchhh
Confidence 99999999999999966543 1999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHH------HHHHhhCCCCCCCcc------hhhhhhc----c--ccCCCchhHHHHHhhHHhhccCCCcchhH
Q 001448 931 LQQGVGRLIN------AIVAVLGPELAPGSI------FFSRCKV----S--AWQCSSPKWSVRFTQQLVLFAPQAVSVHS 992 (1075)
Q Consensus 931 ~~~~igr~l~------alI~~LGPeLq~~s~------~~~~~~~----~--~~~~~~~~eai~clQqL~lFAP~~v~~~~ 992 (1075)
+||++|||++ ++|+++|||||++.. .++.|.. . ..+..+|+++|+|+||+|||||+|+|++.
T Consensus 1019 v~q~~~R~~~~~~~~~alittlgpeL~~N~~~d~t~~~rts~la~~allls~~d~lnqa~ai~clqqlhlFapr~~n~~~ 1098 (2067)
T KOG1822|consen 1019 VHQCYNRCFNGDDDEDALITTLGPELGPNGDKDSTSTLRTSCLAACALLLSHSDPLNQAAAIKCLQQLHLFAPRHVNLDS 1098 (2067)
T ss_pred hhhhhccccccchhHHHHHHhcccccCCCCcccchhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhhcchhccHHH
Confidence 9999999999 999999999998873 4444443 2 33445899999999999999999999999
Q ss_pred HHHHHHHhhcCCChhHHHHHHHHHHHHHccChhhHh----------------------hhchHHHHHHhhccCCCHHHHH
Q 001448 993 HVQTLLSTLSSRQPILRHLAVSTLRHLIEKDPDSVI----------------------EERIEGNLFHMLDEETDSEYVK 1050 (1075)
Q Consensus 993 lV~~L~~~L~S~~~~Lr~aav~cLrqL~qR~a~~v~----------------------~~~le~~Lf~~LD~e~d~~l~~ 1050 (1075)
+|+.||..|+|+|..+|+++++|||||+||++.+|. +.|||+.+|+|||+|+|.++++
T Consensus 1099 lV~~L~~~l~s~~~i~r~~~~~clrql~~Re~sev~e~a~~L~~~~~~e~~~d~~~~pe~gLeg~l~~mld~e~d~~l~~ 1178 (2067)
T KOG1822|consen 1099 LVLQLCSLLSSSYLILRRASFSCLRQLVQREASEVCEYAQLLAKTLAVETSPDANIRPEAGLEGALFIMLDTETDNKLLK 1178 (2067)
T ss_pred HHHHHHHHhcchhhhhhhhHHhhhhHHhHHHHHHHHHHHHHhhhhhhhhhChhhhcCccccchHHHHHHcCCchHHHHHH
Confidence 999999999999999999999999999999999865 2499999999999999999998
Q ss_pred --HHHH---Hhhhhhcchhhhhc
Q 001448 1051 --SYTL---CLAYFSSFYAFYLE 1068 (1075)
Q Consensus 1051 --~~~~---~~~~~~~~~~~~~~ 1068 (1075)
+.+| .+.+.++.++-|+.
T Consensus 1179 ~I~~tl~~~~~~~~~~~ls~Wl~ 1201 (2067)
T KOG1822|consen 1179 NILETLSRMLNSLADELLSSWLM 1201 (2067)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHH
Confidence 3333 56999999999985
No 2
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.58 E-value=4.4e-11 Score=152.34 Aligned_cols=843 Identities=22% Similarity=0.147 Sum_probs=483.5
Q ss_pred CCChhhHHHHHHHHHHHHHHHhhHhhcC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHH
Q 001448 117 KSEPQKVAGAAQCLGELYRQFGRRITSG-LLETTIIAAKLMKFNEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIM 195 (1075)
Q Consensus 117 ~~s~~~~~aA~~cLG~l~~~~G~~l~s~-~~e~~~~llK~lK~~~~~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~ 195 (1075)
.+.|.. ..+..|++.+|.. |+....- .-..|.-.+|=-+....+--..+...+.+..+..|..++ ...-|......
T Consensus 64 ~~~p~r-kL~s~~i~rl~~~-gd~f~~~~~l~~c~d~l~d~~~~~~q~k~~a~~~l~~~y~~~g~~~~-~~~edt~~if~ 140 (2067)
T KOG1822|consen 64 AGPPTR-KLISVAIARLISN-GDSFSLYSRLNSCNDFLSDGSPSDPQRKLAALSCLGSLYEHYGRMIG-RGLEDTVQIFT 140 (2067)
T ss_pred CCchhH-HHHHHHHHHHHhc-cchhhHHHHHHHhhhhhhcCCCccHHHHHhhccchHHHHHHhhHhhc-chHHHHHHHHH
Confidence 334545 4688999999988 7665321 112333444411124677788889999999999997665 33555444333
Q ss_pred HHhccCcchHHHHHHHHHHHHHHhhcCCCc-ccchhhhHhhHHhhhccCCChhHHHHHHHHHHHHHHhccCCCC-cCCCC
Q 001448 196 RFAIVDKSFVVRIAGARCLKAFAHIGGPCL-GVGELDNSATHCVKAIEDPIASVRDAFAEALGSLLALGMNPQA-QVQPK 273 (1075)
Q Consensus 196 r~~~~Dks~~Vr~aAa~cL~~l~~~~~~~~-~~~dlE~l~sl~~K~le~s~~~vR~a~A~~La~lLa~~~~~~~-~~~~~ 273 (1075)
|..-+.-++.++-+. --+.......+.-- .....+..--...-.+-+.+-.||.+.++|+..+--..- +.- ...-.
T Consensus 141 ~~~k~n~s~~~~~i~-~~l~~~~~~~g~~s~~~~~~k~i~l~~k~~lld~s~~v~iaa~rc~~a~s~~~~-~~~~~Sele 218 (2067)
T KOG1822|consen 141 KLVKTNESFVRQEIM-ITLHNALKGMGGTSAATATHKAIRLIAKNSLLDRSFNVKIAAARCLKAFSNLGG-PGLGTSELE 218 (2067)
T ss_pred HHHhhHHHHHHHHHH-HHHHHHHHHhccchHHHHHHHHHHHHHhhhhhhhhHHHHHHhHHHHHHHHhhcC-ccccchhhh
Confidence 333333444444433 34444444321101 111222222222233444455699999999887652211 110 00000
Q ss_pred CCCC---CCC-------CCChhHHHHHHhhhh------hcccCC-----CCcchhHHHHHHHHHHHHHHhcccccCCCcc
Q 001448 274 GKGP---FPP-------AKKLEGGLQRHLALP------FTRANG-----AKSKNMRVNLTLSWVYFLQAIRLKYFHPDSE 332 (1075)
Q Consensus 274 ~k~~---~~~-------~k~l~~~l~~~Ls~~------f~k~~~-----~~~r~~R~Gv~~ayv~fl~~lg~~wle~~~~ 332 (1075)
.-+. +.. .-.+.+.+..++..+ +.++.. ...+.+|-|....|..|++.-...||.+..+
T Consensus 219 ~~~s~cfk~~~~s~~~~r~a~a~~~~~Lla~~~~~~s~~~~~~~g~~~pa~~~~~~~~L~~~~~~fl~~~~~~~l~~~~~ 298 (2067)
T KOG1822|consen 219 TLASYCFKGIEISNSEVRCAVAEFLGSLLALGMHPESAVQKAKKGPFVPAKDKNTREGLALSWSGFLRGGRIRFLKGDSE 298 (2067)
T ss_pred hhcceeeeeeccchHHHHHHHHHHHHHHHhccCCchhhhhhcccCCCCCccchhHHHHHHHHHHHHHhcchhhhhccchh
Confidence 0000 000 000122223233322 222111 1246777789999999988866556655333
Q ss_pred hhHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhhhccCChHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHHHhCC
Q 001448 333 LQDYALQVMDMLRADIFVDSHALACVLYILRIGVTDQMTEPTQRSFLVFLGKQLQAVDASPFMKIAALRTLSYTLKTLGE 412 (1075)
Q Consensus 333 ~~~~~~~i~~ll~~~~~~~~~~r~~v~~ILr~~v~~~L~E~~Q~~~~~~l~~~~~~~~~s~~~lv~aL~el~~Ll~~LGs 412 (1075)
...|..++++.+.... -.|...+++.. ...|. -.-+.+......=+..+|+
T Consensus 299 i~~~s~~~~~~~r~g~------s~~~v~~v~~~-----------------g~~~l------~~~~~a~~~~~~dl~~~~~ 349 (2067)
T KOG1822|consen 299 ILVGSSPVMRDVRVGS------SICYVVFVQSL-----------------GLAWL------EKNLSAFRAHILDLVLLGE 349 (2067)
T ss_pred heecccchhhhhhcch------hHHHHHHHHHh-----------------hhhcc------chhHHHHHhHHHhhhhccc
Confidence 3344444444443111 12222222222 11110 1123333333344455567
Q ss_pred CchhhHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHhCCcchhhHHHHHHHHHHhhhhhcccccCCcccchhhhhchHH
Q 001448 413 VPSEFKEVLDSTVVAAVSHSSQLVRIEAALTLRALAEVDPTCVSGLITYGVTTLNALRENVSFEKGSSLMVELDSLHGQA 492 (1075)
Q Consensus 413 a~~~~~~~l~d~L~~lL~hps~svRi~AA~cLr~~~~a~Ps~l~~ll~~~~~~L~~~~~~l~~~~~~~~~~~~~~~~G~a 492 (1075)
.+.+..+...+.+.+-+.|--..+++.+....++...++|.++ .+++...+-++++.+..+ ++++..+...-+.|+..
T Consensus 350 ~~~~~~~~~~~t~~r~~~~Fl~r~~Ig~~l~~~A~~~~~~~~~-~~~~~~~~~~~~~~~~~s-e~~d~~~~~~~s~~~~v 427 (2067)
T KOG1822|consen 350 VPHETSEFSDATLSRYLISFLLRVTIGALLLEKAQALQCKEIV-GLLSKYVTSLDADRESNS-EKGDKLKEDLASQHLQV 427 (2067)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH-HHHHHHHhHHhhhhhhhh-hccccchHHHHHHHHHH
Confidence 7778888889999999999999999999999999999999999 999999999999988776 66666655567789999
Q ss_pred HHHHHHHhhcCCCCCccCCchhHHHHH---HHHHhhhccCCchhhHHHHHHHHHHHHHHhhccCChhhHhhcHHHHHHHH
Q 001448 493 TVVAALIFISPKLPLGYPARLPKLVLE---VSKKMLTESSRNTLAATVEKEAGWLLLSSLLASMPKEELEDQVFDILSLW 569 (1075)
Q Consensus 493 ~aLAALl~~~~~~pLgvp~~~~~~V~~---~A~~LLk~~~~~~~~a~~~~qagWiLi~sLmtl~g~~~Vk~hlsqLLlLW 569 (1075)
..++.+++.++..-.+.|+-+....+. .....+++ -.++.|.+++|+|-+-|.. +| + .+-.|
T Consensus 428 ~~l~~l~s~~~gl~tt~~~~l~ds~l~i~~~~~~~l~~-----p~as~r~~aaw~Lrcll~~-~P-~--------~l~p~ 492 (2067)
T KOG1822|consen 428 AALAELSSLSPGLGTTAPSLLPDSTLQILDLILTELRH-----PVASARLEAAWLLRCLLNA-MP-S--------YLTPT 492 (2067)
T ss_pred HHHHHHHhhccccccchhhhhHHHHHHHHHHHHHHHcC-----chHHHHHHHHHHHHHHHhc-Cc-h--------hhhHH
Confidence 999999999998877787777665443 34444443 3567999999999955554 55 3 45555
Q ss_pred HhhcCCCchhhhhhccchhHHHHHHHHHHHHHHHH-HHhcCCCCCCCccchhhhHHHHHHHHHHHHHHHhhhh-CCCCch
Q 001448 570 ATLFSGNAEHIIKQHGDLTSKICVLSTAVDALTAF-VRCFLSPDAANSGILLQPVMVYLSRALSYISTIAAKE-LPNIKP 647 (1075)
Q Consensus 570 k~~l~~s~k~~~~~~~e~~~~L~~r~~AL~aL~sF-L~~~~~~~lt~~~~Ll~~~~~~L~~aL~~l~~i~~~~-~~~lk~ 647 (1075)
-..|=..+..+-|+-++....+.++++|+.||+++ ..++ ++++..++....++.+.+++.+-+++. ....|.
T Consensus 493 id~~~~~~e~~~kq~~s~~~~~sg~S~aiaaLl~~~~~~~------plgIp~~k~~~v~~~Aedllkt~aqnsr~s~~kt 566 (2067)
T KOG1822|consen 493 IDRFLERLEHLFKQLRSSPEAVSGFSFAIAALLAGVVVSC------PLGIPHAKGLKVLNFAEDLLKTAAQNSRLSLAKT 566 (2067)
T ss_pred HHHHhccchhHHHHhhccHHHHHHHHHHHHHHHhhhhhcC------CCccchhhHHHHHHHHHHHHHhhccChhHHHHHH
Confidence 55442223333455566777778999999999998 5543 566777777777788888886543310 001122
Q ss_pred hHHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHhhcC-CC-CcccchhhhhhhhccccCcCCCCCCCCChHHHHHhhhc
Q 001448 648 AMDIFIIRTLIAYQSLPDPVSYKSDHPQLIKLCTTPYR-DA-SACEESSCLRLLLDKRDAWLGPWIPGRDWFEDELCAFQ 725 (1075)
Q Consensus 648 ~~~l~r~RiLq~y~~L~~~~~~~~~~~~LL~~~v~~Fs-dp-~~~~~ssll~sl~~~~d~~lg~w~~~~d~ie~~L~~~~ 725 (1075)
..+. +++..|-.+.| ..-......|+.+-=..|. .| +.-++ -..+|.| .|....+..+..|..+.
T Consensus 567 ~~gW---lLi~aLmtlgp-sv~k~~lprllLlWk~~f~rs~ke~ese-------~~rgdaF--twq~tl~~~agaL~~m~ 633 (2067)
T KOG1822|consen 567 LAGW---LLISALMTLGP-SVVKLQLPRLLLLWKNAFPRSPKELESE-------ESRGDAF--TWQLTLEGRAGALSYMK 633 (2067)
T ss_pred HhhH---HHHHHHHhcCC-cccHHHHHHHHHHHHHhcccCccccccc-------ccccchH--HHHHHHHhhhhHHHHHH
Confidence 2222 35566666664 3334445556655444454 22 11111 1233333 24333333445555554
Q ss_pred CCCCCCCCcccccccCCCCCCCchhHHHHHHHHHHHHHHhccCCchhHhHHHHHHHHHHHcccchhHHHHHHHHHHHHHH
Q 001448 726 GGKDGLMPCVWENEVSSFPQPETIKKTLVNQMLLCFGIMFASQHSSGMLSLLGIIEQCLKAGKKQSWHAASVTNICVGLL 805 (1075)
Q Consensus 726 ~~~~g~lp~~~~~~~~~~p~p~p~~tsvVdaai~LFg~vFp~~~~k~q~s~LE~l~~~i~~~k~~~R~~Ai~vNv~~All 805 (1075)
+..++--+..|++....++. |...-+.++-|+..++|+.+++.++.|..+|++..++
T Consensus 634 ~~~s~~~~~~~e~~~~k~~~-----------------------p~~~~l~lls~v~~~lk~yg~~~~~sa~lvrIr~~l~ 690 (2067)
T KOG1822|consen 634 SFVSHKPDSLTESITLKFLT-----------------------PIECALSLLSQVPSVLKAYGNQLKRSALLVRIRAGLY 690 (2067)
T ss_pred HHhccCcchhhHHHHHhcCC-----------------------cHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHH
Confidence 44444344455543333222 4556778888999999999999899999999999999
Q ss_pred HHHHHHhhhCCCCCChHHHHHHHHHHHHHHhcCC-c-cHHHHH---HHHhc-cccccCCchhhHHHHHHHHHHHHhhCCc
Q 001448 806 AGLKALLNLRPQTLGSEVLNSIQAIFLSILAEGD-I-CASQRR---ALLLG-DLTVVTDANYAGSIALAIGCIHRSAGGM 879 (1075)
Q Consensus 806 ~aLk~~~~~~~~~~~~~v~~~~~~ll~~~l~~~d-~-~~~~r~---aalv~-~iv~~~dp~~Rag~aLALG~I~r~vGgm 879 (1075)
-.|+.+..+.-. ......+.+++.+.-...+ + .+..+. -+..+ .+..-. -.++..-..++-+---.
T Consensus 691 e~l~llp~~~~e---~~l~~~lr~lvad~tm~dn~~~~ttt~ll~s~~~~~~~ii~g~-----~i~~t~~~~~e~q~~~~ 762 (2067)
T KOG1822|consen 691 ELLLLLPPSSYE---GSLTALLRKLVADLTMSDNLSANTTTELLRSLAFGDDSIITGP-----WIQATDHRSAEDQLLTP 762 (2067)
T ss_pred HHHHhCCchhhH---HHHHHHHHHHHHhhcccccchhHHHHHHhhhhhccCcccccCh-----hhhhccchhHHHhhccC
Confidence 988765543222 2233444445444443333 1 122221 11111 111100 00111122233331111
Q ss_pred ccccccchhHHHHHHHHHHHHHhcCCcccchhh----HHHHHHHHHhccCCCCchhHHHHHHHHHHHHHhhCCCCCCCcc
Q 001448 880 ALSSLVPATMWSLHGLLLTIEAAGFSFVSHVQA----TLGLAMEILLSEENGWVDLQQGVGRLINAIVAVLGPELAPGSI 955 (1075)
Q Consensus 880 as~~Ll~~~~WaL~aL~li~dsaG~~f~~~v~s----tL~ll~~lll~~~~~~~~~~~~igr~l~alI~~LGPeLq~~s~ 955 (1075)
+..+..--+-|.++++...++++|..+.||+.+ -+....++|-+..++ +++-++..|...|||.-..++
T Consensus 763 ~~~i~~g~le~d~s~ll~~~s~~g~~~~p~~lp~~ls~Idta~~lfg~vfp~-------v~~k~~~~ile~~~esi~~sk 835 (2067)
T KOG1822|consen 763 GSDIFSGALEEDLSSLLSLISAAGLSSVPYALPLALSLIDTAVSLFGSVFPH-------VNNKIRLSILEHFPESIKQSK 835 (2067)
T ss_pred ccccceeeeecCchhhhHHHHhhcccCCCCCCcchhHHHHHHHHHHHHhccC-------ccHHHHHHHHHHHHHHhhhhc
Confidence 122222334899999999999999998888873 333344555555443 444555555555555544433
Q ss_pred hh----------h-------------------------------hhhcc--ccCCCchhHHHHHhhHHhhccCCCcchhH
Q 001448 956 FF----------S-------------------------------RCKVS--AWQCSSPKWSVRFTQQLVLFAPQAVSVHS 992 (1075)
Q Consensus 956 ~~----------~-------------------------------~~~~~--~~~~~~~~eai~clQqL~lFAP~~v~~~~ 992 (1075)
.. + +.... ..+...---+-..+++|.-|.|+..=+.+
T Consensus 836 ~~r~qsV~~~a~t~~al~s~lk~l~e~~~~~~lg~e~v~~~~~~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~~f~a~ 915 (2067)
T KOG1822|consen 836 SARQQSVQVNAVTWQALLSALKYLAEFKGATSLGPEEVRSSALTLIVNSLINPNPKLRCAAAEALARLAQVVGSAPFVAS 915 (2067)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHhhhhccCChHHHHHHHHHHHHHHHhccccchHHH
Confidence 11 0 00000 00111112366778999999999999999
Q ss_pred HHHHHHHhhcCCChhHHHHHHHHHHHHHccChhhHhh-hchHHHHHHhhccCCCHHH---HH--HHHHHhhhhhcchhhh
Q 001448 993 HVQTLLSTLSSRQPILRHLAVSTLRHLIEKDPDSVIE-ERIEGNLFHMLDEETDSEY---VK--SYTLCLAYFSSFYAFY 1066 (1075)
Q Consensus 993 lV~~L~~~L~S~~~~Lr~aav~cLrqL~qR~a~~v~~-~~le~~Lf~~LD~e~d~~l---~~--~~~~~~~~~~~~~~~~ 1066 (1075)
+++.+...|.|.+...+|....-.+..+.|+...+.. ..+...++.+|+-++|+.. ++ ++.+-....++-+-||
T Consensus 916 ~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~qhl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~ 995 (2067)
T KOG1822|consen 916 LAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSGQHLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFR 995 (2067)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCchhcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceeh
Confidence 9999999999999999999999999999999887765 4566657777777766543 22 3333333344444455
Q ss_pred h
Q 001448 1067 L 1067 (1075)
Q Consensus 1067 ~ 1067 (1075)
.
T Consensus 996 ~ 996 (2067)
T KOG1822|consen 996 V 996 (2067)
T ss_pred h
Confidence 4
No 3
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=98.15 E-value=0.00011 Score=79.67 Aligned_cols=131 Identities=24% Similarity=0.176 Sum_probs=103.3
Q ss_pred HHHHHHHHHHHHHHhhHhhcCHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhccCcc
Q 001448 124 AGAAQCLGELYRQFGRRITSGLLETTIIAAKLMKFNEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVDKS 203 (1075)
Q Consensus 124 ~aA~~cLG~l~~~~G~~l~s~~~e~~~~llK~lK~~~~~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~Dks 203 (1075)
..|+.|++.++..+|+.+.......+..++|.+......+|..+..+|..++..++ ...++.......+.++|+
T Consensus 71 ~~A~~~l~~l~~~l~~~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~------~~~~~~~~~l~~~~~~Kn 144 (228)
T PF12348_consen 71 KTACQLLSDLARQLGSHFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCS------YSPKILLEILSQGLKSKN 144 (228)
T ss_dssp HHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-------H--HHHHHHHHHHTT-S-
T ss_pred HHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCC------cHHHHHHHHHHHHHhCCC
Confidence 46999999999999999988999999999999998888999999999999999766 123442224556789999
Q ss_pred hHHHHHHHHHHHHHHhhcC---CCc-ccchhhhHhhHHhhhccCCChhHHHHHHHHHHHHH
Q 001448 204 FVVRIAGARCLKAFAHIGG---PCL-GVGELDNSATHCVKAIEDPIASVRDAFAEALGSLL 260 (1075)
Q Consensus 204 ~~Vr~aAa~cL~~l~~~~~---~~~-~~~dlE~l~sl~~K~le~s~~~vR~a~A~~La~lL 260 (1075)
..||..+++|+..++...+ +.+ ....++.+...+.|.++|++.+||.++-+++..+-
T Consensus 145 ~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~ 205 (228)
T PF12348_consen 145 PQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALY 205 (228)
T ss_dssp HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999988754 334 33457889999999999999999999999999885
No 4
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=98.13 E-value=0.064 Score=67.08 Aligned_cols=400 Identities=15% Similarity=0.116 Sum_probs=227.2
Q ss_pred CCCchhHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHhhcCCChhHhHHHHHHHHHHhccCCchhhHHhHHHHHHhh
Q 001448 33 SPDPLLCFDLLSDLISAIDEEPKESILLWQRKCEDALYSLLILGARRPVRHLASVAMGRIISKGDNISVYSRVSSLQGFL 112 (1075)
Q Consensus 33 ~~~~~~~~~wL~~L~~~l~~~~k~di~~~Q~~l~~~L~~ll~~~~g~P~R~l~a~cl~~ly~~GD~~~lf~~vn~l~~~l 112 (1075)
+=|=--+=|.+..|.|....++-| .-++..+.|.+++.... +-+-++.-||++-|-++--...+=.+|++|.+-+
T Consensus 20 DfRfMAtsDLm~eLqkdsi~Ld~d----Se~kvv~~lLklL~D~n-gEVQnlAVKClg~lvsKvke~~le~~ve~L~~~~ 94 (1233)
T KOG1824|consen 20 DFRFMATSDLMTELQKDSIKLDDD----SERKVVKMLLKLLEDKN-GEVQNLAVKCLGPLVSKVKEDQLETIVENLCSNM 94 (1233)
T ss_pred chhhhhHHHHHHHHHhhhhhcccc----chhHHHHHHHHHHhccC-cHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhhh
Confidence 333334445555666655444433 34667788888776554 4689999999999999988888888888777654
Q ss_pred hcCCCCChhhHHHHHHHHHHHHHHHhhHhhc-CHHHHHHHHHHHhccC------cHHHHHHHHHHHHHHHhcCCCCCchh
Q 001448 113 SDGKKSEPQKVAGAAQCLGELYRQFGRRITS-GLLETTIIAAKLMKFN------EEFVRQEALLLLQNALEGSGGSAAAS 185 (1075)
Q Consensus 113 ~~~k~~s~~~~~aA~~cLG~l~~~~G~~l~s-~~~e~~~~llK~lK~~------~~~~R~~~l~~L~kil~g~g~~~~~~ 185 (1075)
-+||+.... ++++....-+-+ ...+.++ ..+.+|..++--+|.+ .++.|++.+..++-++...|+-.. .
T Consensus 95 ~s~keq~rd--issi~Lktvi~n-l~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll~-~ 170 (1233)
T KOG1824|consen 95 LSGKEQLRD--ISSIGLKTVIAN-LPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTLLP-N 170 (1233)
T ss_pred ccchhhhcc--HHHHHHHHHHhc-CCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcccCc-c
Confidence 345543221 233333332221 2212222 2334445555555542 356999999999999999998776 4
Q ss_pred HHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhcCCCcccchhhhHhhHHhhhccCC--ChhHHHHHHHHHHHHHHhc
Q 001448 186 AYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGGPCLGVGELDNSATHCVKAIEDP--IASVRDAFAEALGSLLALG 263 (1075)
Q Consensus 186 ~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~~~~~~~~dlE~l~sl~~K~le~s--~~~vR~a~A~~La~lLa~~ 263 (1075)
.|..|.| ...--+.-.-..||-=|+-|+..++... +..-+..+..-..|.+..+ +..+|.. -+|||++.-.+
T Consensus 171 fh~~il~-~l~~ql~s~R~aVrKkai~~l~~la~~~----~~~ly~~li~~Ll~~L~~~~q~~~~rt~-Iq~l~~i~r~a 244 (1233)
T KOG1824|consen 171 FHLSILK-CLLPQLQSPRLAVRKKAITALGHLASSC----NRDLYVELIEHLLKGLSNRTQMSATRTY-IQCLAAICRQA 244 (1233)
T ss_pred hHHHHHH-HHhhcccChHHHHHHHHHHHHHHHHHhc----CHHHHHHHHHHHHhccCCCCchHHHHHH-HHHHHHHHHHh
Confidence 8999999 4555566666789999999999998864 3334456777778888874 3455654 57888887321
Q ss_pred cCCCCcCCCCCCCCCCCCCChhHHHHHHhhhhhcccCCCCcchhHHHHHHHHHHHHHHhcccccCCCcchhHHHHHHHHH
Q 001448 264 MNPQAQVQPKGKGPFPPAKKLEGGLQRHLALPFTRANGAKSKNMRVNLTLSWVYFLQAIRLKYFHPDSELQDYALQVMDM 343 (1075)
Q Consensus 264 ~~~~~~~~~~~k~~~~~~k~l~~~l~~~Ls~~f~k~~~~~~r~~R~Gv~~ayv~fl~~lg~~wle~~~~~~~~~~~i~~l 343 (1075)
-. + ..+.++-.+- +...|+........|.|=-+-|+.-.|+.+-...-+ ....++....++-
T Consensus 245 g~----------r---~~~h~~~ivp--~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~ei~---p~~pei~~l~l~y 306 (1233)
T KOG1824|consen 245 GH----------R---FGSHLDKIVP--LVADYCNKIEEDDDELREYCLQALESFLRRCPKEIL---PHVPEIINLCLSY 306 (1233)
T ss_pred cc----------h---hhcccchhhH--HHHHHhcccccCcHHHHHHHHHHHHHHHHhChhhhc---ccchHHHHHHHHH
Confidence 11 0 0112232222 334466433333688999999999999988432221 1123444444555
Q ss_pred hccCCC------------------CCH--------------HHH---HHHHHHHHHhhhccCChHHHHHHHHHHHhhccc
Q 001448 344 LRADIF------------------VDS--------------HAL---ACVLYILRIGVTDQMTEPTQRSFLVFLGKQLQA 388 (1075)
Q Consensus 344 l~~~~~------------------~~~--------------~~r---~~v~~ILr~~v~~~L~E~~Q~~~~~~l~~~~~~ 388 (1075)
++-+++ .|. ++| +|+.-++-+ =.++|.+--|. +.-.++.+++.
T Consensus 307 isYDPNy~yd~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsS-R~E~L~~~~q~-l~p~lI~RfkE 384 (1233)
T KOG1824|consen 307 ISYDPNYNYDTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISS-RLEMLPDFYQT-LGPALISRFKE 384 (1233)
T ss_pred hccCCCCCCCCccchhhhhhhccccchhccccccccchhHHHHHHHHHHHHHHHhc-cHHHHHHHHHH-hCHHHHHHHHH
Confidence 551111 000 023 343333110 02333333331 11222222211
Q ss_pred CCCC-----hhHHHHHHHHHHHHHHHh--------CCCch---hhHH---HHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Q 001448 389 VDAS-----PFMKIAALRTLSYTLKTL--------GEVPS---EFKE---VLDSTVVAAVSHSSQLVRIEAALTLRALAE 449 (1075)
Q Consensus 389 ~~~s-----~~~lv~aL~el~~Ll~~L--------Gsa~~---~~~~---~l~d~L~~lL~hps~svRi~AA~cLr~~~~ 449 (1075)
++-| =|+.+..|.-+...+..+ |..+. -+.+ .+...+-.-+...|.-.|.-.-.-|+.+..
T Consensus 385 REEnVk~dvf~~yi~ll~qt~~~~~~~~d~d~~e~~g~~s~~~~L~~~~~~iVkai~~qlr~ks~kt~~~cf~lL~eli~ 464 (1233)
T KOG1824|consen 385 REENVKADVFHAYIALLKQTRPVIEVLADNDAMEQGGTPSDLSMLSDQVPLIVKAIQKQLREKSVKTRQGCFLLLTELIN 464 (1233)
T ss_pred HhhhHHHHHHHHHHHHHHcCCCCcccccCchhhhccCCccchHHHHhhhHHHHHHHHHHHhhccccchhhHHHHHHHHHH
Confidence 1111 134444454444444444 33331 1222 244445555556667788888888999999
Q ss_pred hCCcchhhHHHHHHHHHH
Q 001448 450 VDPTCVSGLITYGVTTLN 467 (1075)
Q Consensus 450 a~Ps~l~~ll~~~~~~L~ 467 (1075)
..|..+.+-+...+-.+.
T Consensus 465 ~lp~~l~~~~~slvpgI~ 482 (1233)
T KOG1824|consen 465 VLPGALAQHIPSLVPGII 482 (1233)
T ss_pred hCcchhhhcccccchhhh
Confidence 999988887766555443
No 5
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.98 E-value=0.046 Score=69.90 Aligned_cols=470 Identities=16% Similarity=0.111 Sum_probs=281.7
Q ss_pred HHhccCChhhHHHHHHHHHHHHHHHhhcCCChhHhHHHHHHHHHHhcc-CCchhhHHhHHHHHHhhh-cCCCCChhhHHH
Q 001448 48 SAIDEEPKESILLWQRKCEDALYSLLILGARRPVRHLASVAMGRIISK-GDNISVYSRVSSLQGFLS-DGKKSEPQKVAG 125 (1075)
Q Consensus 48 ~~l~~~~k~di~~~Q~~l~~~L~~ll~~~~g~P~R~l~a~cl~~ly~~-GD~~~lf~~vn~l~~~l~-~~k~~s~~~~~a 125 (1075)
++-.+++ .+.|..++..|...+..-+-+++||-+|+..+.+.+. +|- .=.++..+|- ..+...+..|=.
T Consensus 67 ~~w~~l~----~e~~~siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e-----~WPell~~L~q~~~S~~~~~rE~ 137 (1075)
T KOG2171|consen 67 KHWSRLS----AEVQQSIKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPE-----KWPELLQFLFQSTKSPNPSLRES 137 (1075)
T ss_pred HHhhcCC----HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhcccc-----chHHHHHHHHHHhcCCCcchhHH
Confidence 3444454 6788899999999999999999999999999999985 554 2334443333 333445566668
Q ss_pred HHHHHHHHHHHHhhHhhcCHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhcCC-CCCchhHHHHHHHHH---HHHhccC
Q 001448 126 AAQCLGELYRQFGRRITSGLLETTIIAAKLMKFNEEFVRQEALLLLQNALEGSG-GSAAASAYSEAFRLI---MRFAIVD 201 (1075)
Q Consensus 126 A~~cLG~l~~~~G~~l~s~~~e~~~~llK~lK~~~~~~R~~~l~~L~kil~g~g-~~~~~~~~~di~K~~---~r~~~~D 201 (1075)
|+.+|..+=+.+|......+.+....+.+.|-...+.+|..+.+++..+..-.. +...-.-.+|..-.. ......|
T Consensus 138 al~il~s~~~~~~~~~~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~ 217 (1075)
T KOG2171|consen 138 ALLILSSLPETFGNTLQPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQD 217 (1075)
T ss_pred HHHHHHhhhhhhccccchhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhc
Confidence 999999999999999999999999999999998766699999999999988764 112112233333322 2223444
Q ss_pred cchHHHHHHHHHHHHHHhhcCCCcccchhhhHhhHHhhhccCC--ChhHHHHHHHHHHHHHHhccCCCCcCCCCCCCCCC
Q 001448 202 KSFVVRIAGARCLKAFAHIGGPCLGVGELDNSATHCVKAIEDP--IASVRDAFAEALGSLLALGMNPQAQVQPKGKGPFP 279 (1075)
Q Consensus 202 ks~~Vr~aAa~cL~~l~~~~~~~~~~~dlE~l~sl~~K~le~s--~~~vR~a~A~~La~lLa~~~~~~~~~~~~~k~~~~ 279 (1075)
..-.+-..+.+|+.++.... |-+-..-++.+..+|.+...+. +..+|+.+=+++-.+.-. .|+ +.||...
T Consensus 218 ~d~~~a~~~l~~l~El~e~~-pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~--Ap~-----~~k~~~~ 289 (1075)
T KOG2171|consen 218 GDDDAAKSALEALIELLESE-PKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEY--APA-----MCKKLAL 289 (1075)
T ss_pred cchHHHHHHHHHHHHHHhhc-hHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHh--hHH-----Hhhhchh
Confidence 55555566688888888864 5555567789999999998884 578999998888776632 111 1222211
Q ss_pred CCCChhHHHHHHhhh-----hhcccCCC---C-cchhHHHHHHHHHHHHHHhcccccCCCcchhHHHHHHHHHhccCCCC
Q 001448 280 PAKKLEGGLQRHLAL-----PFTRANGA---K-SKNMRVNLTLSWVYFLQAIRLKYFHPDSELQDYALQVMDMLRADIFV 350 (1075)
Q Consensus 280 ~~k~l~~~l~~~Ls~-----~f~k~~~~---~-~r~~R~Gv~~ayv~fl~~lg~~wle~~~~~~~~~~~i~~ll~~~~~~ 350 (1075)
-..++=-.+.+.... ....+-.. . .-.-++|. ++.-.+-..|||+.+ ..-+..++-.++. ++
T Consensus 290 ~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~-~~lDrlA~~L~g~~v-----~p~~~~~l~~~l~-S~-- 360 (1075)
T KOG2171|consen 290 LGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAE-QALDRLALHLGGKQV-----LPPLFEALEAMLQ-ST-- 360 (1075)
T ss_pred hhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHH-HHHHHHHhcCChhhe-----hHHHHHHHHHHhc-CC--
Confidence 111221111101000 01111000 0 01112222 234444444665544 2233334444443 11
Q ss_pred CHHHHHHHHHHHHHhhhccCChHHHHHHHH-------HHHhhcccCCCChhHHHHHHHHHHHHHHHhCCCch-hhHHHHH
Q 001448 351 DSHALACVLYILRIGVTDQMTEPTQRSFLV-------FLGKQLQAVDASPFMKIAALRTLSYTLKTLGEVPS-EFKEVLD 422 (1075)
Q Consensus 351 ~~~~r~~v~~ILr~~v~~~L~E~~Q~~~~~-------~l~~~~~~~~~s~~~lv~aL~el~~Ll~~LGsa~~-~~~~~l~ 422 (1075)
+..-|+...-- ....+|-.++.+.. .+++.+ .||.+-+--.|+.++|.+=..++-... ...+.+.
T Consensus 361 ~w~~R~AaL~A-----ls~i~EGc~~~m~~~l~~Il~~Vl~~l--~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~ 433 (1075)
T KOG2171|consen 361 EWKERHAALLA-----LSVIAEGCSDVMIGNLPKILPIVLNGL--NDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLP 433 (1075)
T ss_pred CHHHHHHHHHH-----HHHHHcccHHHHHHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhcc
Confidence 12223221111 11225555544443 333333 567777778899888877666665433 3456677
Q ss_pred HHHHHHhcCCCh-HHHHHHHHHHHHHHHhCCc-chhhHHHHHHH-HHHhhhhhcccccCCcccchhhhhchHHHHHHHHH
Q 001448 423 STVVAAVSHSSQ-LVRIEAALTLRALAEVDPT-CVSGLITYGVT-TLNALRENVSFEKGSSLMVELDSLHGQATVVAALI 499 (1075)
Q Consensus 423 d~L~~lL~hps~-svRi~AA~cLr~~~~a~Ps-~l~~ll~~~~~-~L~~~~~~l~~~~~~~~~~~~~~~~G~a~aLAALl 499 (1075)
..|+..+-.+.. -|+-+||-+|-.|..-+|. .+.|.++..++ .+.-+.. . ..+..-.+--.+||+.-
T Consensus 434 ~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~----~------~~~~v~e~vvtaIasvA 503 (1075)
T KOG2171|consen 434 PALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQ----S------SKPYVQEQAVTAIASVA 503 (1075)
T ss_pred HHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhc----C------CchhHHHHHHHHHHHHH
Confidence 788888876655 8999999999998877776 88999998888 4433321 1 11233344445666666
Q ss_pred hhcCCCCCccCCchhHHHHHHHHHhhhccCCchh-hHHHHHHHHHHHHHHhhcc-CChhhHhhcHHHHHHH
Q 001448 500 FISPKLPLGYPARLPKLVLEVSKKMLTESSRNTL-AATVEKEAGWLLLSSLLAS-MPKEELEDQVFDILSL 568 (1075)
Q Consensus 500 ~~~~~~pLgvp~~~~~~V~~~A~~LLk~~~~~~~-~a~~~~qagWiLi~sLmtl-~g~~~Vk~hlsqLLlL 568 (1075)
.++... .+|| ..+++-.=...|.++.+.++ ...-++-=|= |++.+ .|.+=...+-.+++-+
T Consensus 504 ~AA~~~--F~pY--~d~~Mp~L~~~L~n~~~~d~r~LrgktmEci----sli~~AVGke~F~~~a~eliql 566 (1075)
T KOG2171|consen 504 DAAQEK--FIPY--FDRLMPLLKNFLQNADDKDLRELRGKTMECL----SLIARAVGKEKFLPLAEELIQL 566 (1075)
T ss_pred HHHhhh--hHhH--HHHHHHHHHHHHhCCCchhhHHHHhhHHHHH----HHHHHHhhhhhhhHhHHHHHHH
Confidence 666644 6665 56788888888988886554 3333433333 33333 4534344444444443
No 6
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=97.86 E-value=0.11 Score=64.97 Aligned_cols=523 Identities=14% Similarity=0.063 Sum_probs=283.2
Q ss_pred hhhHHHHHHHHHHHHHHHhhcC--CChhHhHHHHHHHHHHhccCCchhhHHhHHHHHHhhhcCCCCChhhHHHHHHHHHH
Q 001448 55 KESILLWQRKCEDALYSLLILG--ARRPVRHLASVAMGRIISKGDNISVYSRVSSLQGFLSDGKKSEPQKVAGAAQCLGE 132 (1075)
Q Consensus 55 k~di~~~Q~~l~~~L~~ll~~~--~g~P~R~l~a~cl~~ly~~GD~~~lf~~vn~l~~~l~~~k~~s~~~~~aA~~cLG~ 132 (1075)
..-++.++.++++.+.+.+... +.+|--=++-+-++..+-.+=.-++++-|-...-.++ .|..+...+.-|+.++-.
T Consensus 426 ~~~L~~~~~~iVkai~~qlr~ks~kt~~~cf~lL~eli~~lp~~l~~~~~slvpgI~~~l~-DkSsss~~ki~~L~fl~~ 504 (1233)
T KOG1824|consen 426 LSMLSDQVPLIVKAIQKQLREKSVKTRQGCFLLLTELINVLPGALAQHIPSLVPGIIYSLN-DKSSSSNLKIDALVFLYS 504 (1233)
T ss_pred hHHHHhhhHHHHHHHHHHHhhccccchhhHHHHHHHHHHhCcchhhhcccccchhhhhhcC-CccchHHHHHHHHHHHHH
Confidence 3668889999999999888733 2222233455566666666666667776666666564 343333444567777766
Q ss_pred HHHHHhhHhhcCH-HHHHHHHHHHhccCcHHHHHHHHHHHHHHHh---cCCC---CCchhHHHHHHH-HHHHHhccCcch
Q 001448 133 LYRQFGRRITSGL-LETTIIAAKLMKFNEEFVRQEALLLLQNALE---GSGG---SAAASAYSEAFR-LIMRFAIVDKSF 204 (1075)
Q Consensus 133 l~~~~G~~l~s~~-~e~~~~llK~lK~~~~~~R~~~l~~L~kil~---g~g~---~~~~~~~~di~K-~~~r~~~~Dks~ 204 (1075)
+...+|-...-.+ +..++.+.-..-.+=..+-+|++....+.++ -.-. ...+...+++|- ..-|--.+|.+.
T Consensus 505 ~L~s~~p~~fhp~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvirpl~~~~~~d~~~~v~~m~~~tl~rL~a~d~Dq 584 (1233)
T KOG1824|consen 505 ALISHPPEVFHPHLSALSPPVVAAVGDPFYKISAEALLVCQQLVKVIRPLQPPSSFDASPYVKTMYDCTLQRLKATDSDQ 584 (1233)
T ss_pred HHhcCChhhcccchhhhhhHHHHHhcCchHhhhHHHHHHHHHHHHHhcccCCCccCCCChhHHHHHHHHHHHHhcccccH
Confidence 6665554332222 2222233333333445566677766665554 3332 122456777777 223445689999
Q ss_pred HHHHHHHHHHHHHHhhcCCCcccchhhhHhhHHhhhccCCChhHHHHHHHHHHHHHHhccCCCCcCCCCCCCCCCCCCCh
Q 001448 205 VVRIAGARCLKAFAHIGGPCLGVGELDNSATHCVKAIEDPIASVRDAFAEALGSLLALGMNPQAQVQPKGKGPFPPAKKL 284 (1075)
Q Consensus 205 ~Vr~aAa~cL~~l~~~~~~~~~~~dlE~l~sl~~K~le~s~~~vR~a~A~~La~lLa~~~~~~~~~~~~~k~~~~~~k~l 284 (1075)
.||-.|+.|+..++..-+. +-.+|+..+..+..+-+. |.-||.++++++..+......-. + .-.+
T Consensus 585 eVkeraIscmgq~i~~fgD-~l~~eL~~~L~il~eRl~--nEiTRl~AvkAlt~Ia~S~l~i~-------l-----~~~l 649 (1233)
T KOG1824|consen 585 EVKERAISCMGQIIANFGD-FLGNELPRTLPILLERLG--NEITRLTAVKALTLIAMSPLDID-------L-----SPVL 649 (1233)
T ss_pred HHHHHHHHHHHHHHHHHhh-hhhhhhHHHHHHHHHHHh--chhHHHHHHHHHHHHHhccceee-------h-----hhhH
Confidence 9999999999998886322 234666666666666664 56699999999998874433211 0 0023
Q ss_pred hHHHHHHhhhhhcccCCCCcchhHHHHHHHHHHHHHHhcccccCCCcchhHHHHHHHHHhc-cCCCCCHHHHHHHHHH--
Q 001448 285 EGGLQRHLALPFTRANGAKSKNMRVNLTLSWVYFLQAIRLKYFHPDSELQDYALQVMDMLR-ADIFVDSHALACVLYI-- 361 (1075)
Q Consensus 285 ~~~l~~~Ls~~f~k~~~~~~r~~R~Gv~~ayv~fl~~lg~~wle~~~~~~~~~~~i~~ll~-~~~~~~~~~r~~v~~I-- 361 (1075)
.+.+. . -.+|+|-. .|..|.+...+|-.++...|.+.=.. .++..+.++-.+++ ...|+++.+-.|..++
T Consensus 650 ~~il~-~-l~~flrK~---~r~lr~~~l~a~~~L~~~~~~~~~~~--~~e~vL~el~~Lisesdlhvt~~a~~~L~tl~~ 722 (1233)
T KOG1824|consen 650 TEILP-E-LASFLRKN---QRALRLATLTALDKLVKNYSDSIPAE--LLEAVLVELPPLISESDLHVTQLAVAFLTTLAI 722 (1233)
T ss_pred HHHHH-H-HHHHHHHH---HHHHHHHHHHHHHHHHHHHhccccHH--HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHh
Confidence 33333 2 24588877 69999999999999999986543211 12345555556655 3444444432222221
Q ss_pred -------------HHHhh----hccC---ChHHHHHHHHHHHhhc-------------ccCCC-------Chh-------
Q 001448 362 -------------LRIGV----TDQM---TEPTQRSFLVFLGKQL-------------QAVDA-------SPF------- 394 (1075)
Q Consensus 362 -------------Lr~~v----~~~L---~E~~Q~~~~~~l~~~~-------------~~~~~-------s~~------- 394 (1075)
|+..| .+.+ -++.=......++..- ..+-+ .++
T Consensus 723 ~~ps~l~~~~~~iL~~ii~ll~Spllqg~al~~~l~~f~alV~t~~~~l~y~~l~s~lt~PV~~~~~~~l~kqa~~siA~ 802 (1233)
T KOG1824|consen 723 IQPSSLLKISNPILDEIIRLLRSPLLQGGALSALLLFFQALVITKEPDLDYISLLSLLTAPVYEQVTDGLHKQAYYSIAK 802 (1233)
T ss_pred cccHHHHHHhhhhHHHHHHHhhCccccchHHHHHHHHHHHHHhcCCCCccHHHHHHHHcCCcccccccchhHHHHHHHHH
Confidence 12211 1111 1111122222222210 01111 111
Q ss_pred ---HHHHHHH-----HHHHHHHHhCCCch---------------------hhHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 001448 395 ---MKIAALR-----TLSYTLKTLGEVPS---------------------EFKEVLDSTVVAAVSHSSQLVRIEAALTLR 445 (1075)
Q Consensus 395 ---~lv~aL~-----el~~Ll~~LGsa~~---------------------~~~~~l~d~L~~lL~hps~svRi~AA~cLr 445 (1075)
+++++-+ ..+.|++++-+.-. .-+..+.+.++..+.||+.-|+-+||.+|=
T Consensus 803 cvA~Lt~~~~~~s~s~a~kl~~~~~s~~s~~~ikvfa~LslGElgr~~~~s~~~e~~~~iieaf~sp~edvksAAs~ALG 882 (1233)
T KOG1824|consen 803 CVAALTCACPQKSKSLATKLIQDLQSPKSSDSIKVFALLSLGELGRRKDLSPQNELKDTIIEAFNSPSEDVKSAASYALG 882 (1233)
T ss_pred HHHHHHHhccccchhHHHHHHHHHhCCCCchhHHHHHHhhhhhhccCCCCCcchhhHHHHHHHcCCChHHHHHHHHHHhh
Confidence 2233332 33456666554221 114568899999999999999999999999
Q ss_pred HHHH-hCCcchhhHHHHHHH-------HHHhhhhhccccc------------------------CCccc----------c
Q 001448 446 ALAE-VDPTCVSGLITYGVT-------TLNALRENVSFEK------------------------GSSLM----------V 483 (1075)
Q Consensus 446 ~~~~-a~Ps~l~~ll~~~~~-------~L~~~~~~l~~~~------------------------~~~~~----------~ 483 (1075)
.+++ +.|.++.-+++.... .|.++++-+...+ |.|.- .
T Consensus 883 sl~vgnl~~yLpfil~qi~sqpk~QyLLLhSlkevi~~~svd~~~~~v~~IW~lL~k~cE~~eegtR~vvAECLGkL~l~ 962 (1233)
T KOG1824|consen 883 SLAVGNLPKYLPFILEQIESQPKRQYLLLHSLKEVIVSASVDGLKPYVEKIWALLFKHCECAEEGTRNVVAECLGKLVLI 962 (1233)
T ss_pred hhhcCchHhHHHHHHHHHhcchHhHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHhcccchhhhHHHHHHHhhhHHhC
Confidence 9998 778788777654322 2333333211110 11100 0
Q ss_pred hh----hh-----hchHHHHHHHHHhhcCCCCCccCCchhHHHHHHHHHhhhccCCchhhHHHHHHHHHHHHHHhhccCC
Q 001448 484 EL----DS-----LHGQATVVAALIFISPKLPLGYPARLPKLVLEVSKKMLTESSRNTLAATVEKEAGWLLLSSLLASMP 554 (1075)
Q Consensus 484 ~~----~~-----~~G~a~aLAALl~~~~~~pLgvp~~~~~~V~~~A~~LLk~~~~~~~~a~~~~qagWiLi~sLmtl~g 554 (1075)
.| .+ -.|-++.-+..+++++-.---=|.-+-.-...+-.+++|-=-+-++ .-.+++-.-+.+... +-
T Consensus 963 epesLlpkL~~~~~S~a~~~rs~vvsavKfsisd~p~~id~~lk~~ig~fl~~~~dpDl---~VrrvaLvv~nSaah-NK 1038 (1233)
T KOG1824|consen 963 EPESLLPKLKLLLRSEASNTRSSVVSAVKFSISDQPQPIDPLLKQQIGDFLKLLRDPDL---EVRRVALVVLNSAAH-NK 1038 (1233)
T ss_pred ChHHHHHHHHHHhcCCCcchhhhhhheeeeeecCCCCccCHHHHHHHHHHHHHHhCCch---hHHHHHHHHHHHHHc-cC
Confidence 01 01 1223333334444433110001111111122333344443333332 334455555666666 57
Q ss_pred hhhHhhcHHHHHHHHHhhcCCCchhhhhh---------ccchhHHHHHHHHHHHHHHHHHHhc
Q 001448 555 KEELEDQVFDILSLWATLFSGNAEHIIKQ---------HGDLTSKICVLSTAVDALTAFVRCF 608 (1075)
Q Consensus 555 ~~~Vk~hlsqLLlLWk~~l~~s~k~~~~~---------~~e~~~~L~~r~~AL~aL~sFL~~~ 608 (1075)
|+-||.-+|.+|-+--+--. --|++.++ -+|. |..|.+|-+||.+.|.+|
T Consensus 1039 pslIrDllpeLLp~Ly~eTk-vrkelIreVeMGPFKH~VDdg---Ld~RKaaFEcmytLLdsc 1097 (1233)
T KOG1824|consen 1039 PSLIRDLLPELLPLLYSETK-VRKELIREVEMGPFKHTVDDG---LDLRKAAFECMYTLLDSC 1097 (1233)
T ss_pred HhHHHHHHHHHHHHHHHhhh-hhHhhhhhhcccCccccccch---HHHHHHHHHHHHHHHHhh
Confidence 79999999999876543211 12233222 1333 689999999999999875
No 7
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.70 E-value=0.38 Score=61.90 Aligned_cols=444 Identities=19% Similarity=0.160 Sum_probs=258.3
Q ss_pred HHHHHHHHhhcCCChhHhHHHHHHHHHHhccCCchhhHHhHH-HHHHhhhc------CCCCChhhHHHHHHHHHHHHHHH
Q 001448 65 CEDALYSLLILGARRPVRHLASVAMGRIISKGDNISVYSRVS-SLQGFLSD------GKKSEPQKVAGAAQCLGELYRQF 137 (1075)
Q Consensus 65 l~~~L~~ll~~~~g~P~R~l~a~cl~~ly~~GD~~~lf~~vn-~l~~~l~~------~k~~s~~~~~aA~~cLG~l~~~~ 137 (1075)
+.-.|..++..++-|-+|.+.|--+=++..+ .|.+++ +.+.-|++ -+...++.|+.-+..+.++.+..
T Consensus 37 ~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~-----~w~~l~~e~~~siks~lL~~~~~E~~~~vr~k~~dviAeia~~~ 111 (1075)
T KOG2171|consen 37 LLPALAHILATSADPQVRQLAAVLLRKLLTK-----HWSRLSAEVQQSIKSSLLEIIQSETEPSVRHKLADVIAEIARND 111 (1075)
T ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHHHHHH-----HhhcCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhc
Confidence 5566777788888888888877666666655 555554 33433332 13556777777888888888888
Q ss_pred hhHhhcCHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHH
Q 001448 138 GRRITSGLLETTIIAAKLMKFNEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAF 217 (1075)
Q Consensus 138 G~~l~s~~~e~~~~llK~lK~~~~~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l 217 (1075)
++. .-||.+..++-..|+.+.+.|..++..|..+..-.|+... ..++|+.. .+..+++|.+.+||++|++.+.++
T Consensus 112 l~e---~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~-~~~~~l~~-lf~q~~~d~s~~vr~~a~rA~~a~ 186 (1075)
T KOG2171|consen 112 LPE---KWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQ-PHLDDLLR-LFSQTMTDPSSPVRVAAVRALGAF 186 (1075)
T ss_pred ccc---chHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccc-hhHHHHHH-HHHHhccCCcchHHHHHHHHHHHH
Confidence 877 7999999999999999999999999999999999996553 45556544 799999999988999999999888
Q ss_pred HhhcCCCcccchhhh-------HhhHHhhhccCCChhHHHHHHHHHHHHHHhccCCCCcCCCCCCCCCCCCCChhHHHHH
Q 001448 218 AHIGGPCLGVGELDN-------SATHCVKAIEDPIASVRDAFAEALGSLLALGMNPQAQVQPKGKGPFPPAKKLEGGLQR 290 (1075)
Q Consensus 218 ~~~~~~~~~~~dlE~-------l~sl~~K~le~s~~~vR~a~A~~La~lLa~~~~~~~~~~~~~k~~~~~~k~l~~~l~~ 290 (1075)
+.... -++++.+. +...+-+.++..|..+-+.+=++|-+++-. .+ +--...++++++
T Consensus 187 ~~~~~--~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~---~p----------k~l~~~l~~ii~- 250 (1075)
T KOG2171|consen 187 AEYLE--NNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLES---EP----------KLLRPHLSQIIQ- 250 (1075)
T ss_pred HHHhc--cchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhh---ch----------HHHHHHHHHHHH-
Confidence 87531 12233332 344555556666665556666666665521 10 000012344443
Q ss_pred HhhhhhcccCCCCcchhHHHHHHHHHHHHHHhcccccCCCcchhHHHHHH----HHHhc---cC------------CCCC
Q 001448 291 HLALPFTRANGAKSKNMRVNLTLSWVYFLQAIRLKYFHPDSELQDYALQV----MDMLR---AD------------IFVD 351 (1075)
Q Consensus 291 ~Ls~~f~k~~~~~~r~~R~Gv~~ayv~fl~~lg~~wle~~~~~~~~~~~i----~~ll~---~~------------~~~~ 351 (1075)
++.+-.+.. .....+|.-.-+..+.|... -+.-.. -..+|...+ +.+.. .+ -..+
T Consensus 251 -~~l~Ia~n~-~l~~~~R~~ALe~ivs~~e~-Ap~~~k---~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~ 324 (1075)
T KOG2171|consen 251 -FSLEIAKNK-ELENSIRHLALEFLVSLSEY-APAMCK---KLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEET 324 (1075)
T ss_pred -HHHHHhhcc-cccHHHHHHHHHHHHHHHHh-hHHHhh---hchhhhccHHHHHHHhcCCcccchhhccccccccccccC
Confidence 122211111 22577888777777777665 100010 112333322 22221 01 0011
Q ss_pred HH--HHHHHHHHHHHhhhccCChHHHHHHHHHHHhhcccCCCCh-hHHHHHHHHHHHHHHHhCCCch----hhHHHHHHH
Q 001448 352 SH--ALACVLYILRIGVTDQMTEPTQRSFLVFLGKQLQAVDASP-FMKIAALRTLSYTLKTLGEVPS----EFKEVLDST 424 (1075)
Q Consensus 352 ~~--~r~~v~~ILr~~v~~~L~E~~Q~~~~~~l~~~~~~~~~s~-~~lv~aL~el~~Ll~~LGsa~~----~~~~~l~d~ 424 (1075)
++ +++++..+ -..++ |+.-=--+...+-.-+.++++.+ |..+.||..+ |+... ..-+.+.+.
T Consensus 325 ~~~~A~~~lDrl-A~~L~---g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i-------~EGc~~~m~~~l~~Il~~ 393 (1075)
T KOG2171|consen 325 PYRAAEQALDRL-ALHLG---GKQVLPPLFEALEAMLQSTEWKERHAALLALSVI-------AEGCSDVMIGNLPKILPI 393 (1075)
T ss_pred cHHHHHHHHHHH-HhcCC---hhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHH-------HcccHHHHHHHHHHHHHH
Confidence 22 46777666 33332 22211233333333344666643 4444444333 44333 345678889
Q ss_pred HHHHhcCCChHHHHHHHHHHHHHHHhCCcchhhHHHHHHH-HHHhhhhhcccccCCcccchhhhhchHHHHHHHHHhhcC
Q 001448 425 VVAAVSHSSQLVRIEAALTLRALAEVDPTCVSGLITYGVT-TLNALRENVSFEKGSSLMVELDSLHGQATVVAALIFISP 503 (1075)
Q Consensus 425 L~~lL~hps~svRi~AA~cLr~~~~a~Ps~l~~ll~~~~~-~L~~~~~~l~~~~~~~~~~~~~~~~G~a~aLAALl~~~~ 503 (1075)
++..|..|..-||.+|--|+-++.+-++-.++.--...+. .|-.. ++ . +...-=++++-+|++.-+.
T Consensus 394 Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~---ld--~-------~~~~rV~ahAa~al~nf~E 461 (1075)
T KOG2171|consen 394 VLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIAL---LD--S-------TQNVRVQAHAAAALVNFSE 461 (1075)
T ss_pred HHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHH---hc--c-------cCchHHHHHHHHHHHHHHH
Confidence 9999999999999999999999997766544332211111 11111 00 0 1111236778889998877
Q ss_pred CCCCccCCchhHHHHHHHHH----hhhccCCchhhHHHHHHHHHHHHHHhhccCChhhHhhcHHHHHHHHHhhc
Q 001448 504 KLPLGYPARLPKLVLEVSKK----MLTESSRNTLAATVEKEAGWLLLSSLLASMPKEELEDQVFDILSLWATLF 573 (1075)
Q Consensus 504 ~~pLgvp~~~~~~V~~~A~~----LLk~~~~~~~~a~~~~qagWiLi~sLmtl~g~~~Vk~hlsqLLlLWk~~l 573 (1075)
.| +.+++...++.=-+ +|.+++.. ..+.++- .=||+.=.-.+..|++ +-.+++-+-|+.+
T Consensus 462 ~~----~~~~l~pYLd~lm~~~l~~L~~~~~~----~v~e~vv-taIasvA~AA~~~F~p-Y~d~~Mp~L~~~L 525 (1075)
T KOG2171|consen 462 EC----DKSILEPYLDGLMEKKLLLLLQSSKP----YVQEQAV-TAIASVADAAQEKFIP-YFDRLMPLLKNFL 525 (1075)
T ss_pred hC----cHHHHHHHHHHHHHHHHHHHhcCCch----hHHHHHH-HHHHHHHHHHhhhhHh-HHHHHHHHHHHHH
Confidence 54 45555555554333 33344332 2333333 3344444225667766 6677777777777
No 8
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.69 E-value=0.009 Score=71.90 Aligned_cols=308 Identities=20% Similarity=0.133 Sum_probs=207.6
Q ss_pred HHHHHHHHHHHHHHhhHhhcCHHHHHHHHHHHhcc----CcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhc
Q 001448 124 AGAAQCLGELYRQFGRRITSGLLETTIIAAKLMKF----NEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAI 199 (1075)
Q Consensus 124 ~aA~~cLG~l~~~~G~~l~s~~~e~~~~llK~lK~----~~~~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~ 199 (1075)
+||+.+|..+|+ + +...+++-.+|. .+=.+|-+...+|++|-+|+-.+..+ ..-+++- .+.+++
T Consensus 376 AAaLDVLanvf~---~-------elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p-~LpeLip-~l~~~L 443 (885)
T KOG2023|consen 376 AAALDVLANVFG---D-------ELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVP-HLPELIP-FLLSLL 443 (885)
T ss_pred HHHHHHHHHhhH---H-------HHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhccc-chHHHHH-HHHHHh
Confidence 677888887664 3 344455555554 34469999999999999999877753 4668888 588899
Q ss_pred cCcchHHHHHHHHHHHHHHhhcCCCc-ccchhhhHhhHHhhhccCCChhHHHHHHHHHHHHHHhccCCCCcCCCCCCCCC
Q 001448 200 VDKSFVVRIAGARCLKAFAHIGGPCL-GVGELDNSATHCVKAIEDPIASVRDAFAEALGSLLALGMNPQAQVQPKGKGPF 278 (1075)
Q Consensus 200 ~Dks~~Vr~aAa~cL~~l~~~~~~~~-~~~dlE~l~sl~~K~le~s~~~vR~a~A~~La~lLa~~~~~~~~~~~~~k~~~ 278 (1075)
.||...||...|-.|....+.- ..- +..=|..+..=.+|-+=++|..|..|+..++|.+--.+...- .
T Consensus 444 ~DKkplVRsITCWTLsRys~wv-~~~~~~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~eL---V------- 512 (885)
T KOG2023|consen 444 DDKKPLVRSITCWTLSRYSKWV-VQDSRDEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEEL---V------- 512 (885)
T ss_pred ccCccceeeeeeeeHhhhhhhH-hcCChHhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccchh---H-------
Confidence 9999999988877665554421 000 223345566666777777899999999999988763332211 0
Q ss_pred CCCCChhHHHHHHhhhhhcccCCCCcchhHHHHHHHHHHHHHHhcccccCCCcchhHHHHHHHHHhc------cCCC--C
Q 001448 279 PPAKKLEGGLQRHLALPFTRANGAKSKNMRVNLTLSWVYFLQAIRLKYFHPDSELQDYALQVMDMLR------ADIF--V 350 (1075)
Q Consensus 279 ~~~k~l~~~l~~~Ls~~f~k~~~~~~r~~R~Gv~~ayv~fl~~lg~~wle~~~~~~~~~~~i~~ll~------~~~~--~ 350 (1075)
+ -++..+. .|..-|-|-. .|..++ +-+|...|-...|.. | |-..|+.+++-=+- .+.. .
T Consensus 513 -p--~l~~IL~-~l~~af~kYQ---~KNLlI-LYDAIgtlAdsvg~~-L----n~~~YiqiLmPPLi~KW~~lsd~DKdL 579 (885)
T KOG2023|consen 513 -P--YLEYILD-QLVFAFGKYQ---KKNLLI-LYDAIGTLADSVGHA-L----NKPAYIQILMPPLIEKWELLSDSDKDL 579 (885)
T ss_pred -H--HHHHHHH-HHHHHHHHHh---hcceeh-HHHHHHHHHHHHHHh-c----CcHHHHHHhccHHHHHHHhcCcccchH
Confidence 0 2455555 6777776665 455554 556666666667644 2 22578876542222 1111 1
Q ss_pred CHH--HHHHHHHHHHHhhhccCChHHHH--HHHH----HHHhhcc--c-CCCChhHHHHHHHHHHHHHHHhCCCchhh--
Q 001448 351 DSH--ALACVLYILRIGVTDQMTEPTQR--SFLV----FLGKQLQ--A-VDASPFMKIAALRTLSYTLKTLGEVPSEF-- 417 (1075)
Q Consensus 351 ~~~--~r~~v~~ILr~~v~~~L~E~~Q~--~~~~----~l~~~~~--~-~~~s~~~lv~aL~el~~Ll~~LGsa~~~~-- 417 (1075)
=|- +..||.--|++++.+.--|-=|| .+++ .+.+.-+ . .-|.+-.+||+|+.+++|.+.||+...++
T Consensus 580 fPLLEClSsia~AL~~gF~P~~~~Vy~Rc~~il~~t~q~~~~~~~~~~~~~pdkdfiI~sLDL~SGLaegLg~~ie~Lva 659 (885)
T KOG2023|consen 580 FPLLECLSSIASALGVGFLPYAQPVYQRCFRILQKTLQLLAKVQQDPTVEAPDKDFIIVSLDLLSGLAEGLGSHIEPLVA 659 (885)
T ss_pred HHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHhccCCccccCCCcceEEEeHHHHhHHHHHhhhchHHHhh
Confidence 111 34667777788888777666663 2222 2222111 1 23466789999999999999999987765
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHhCCcchhhHHHHHHHHHH
Q 001448 418 KEVLDSTVVAAVSHSSQLVRIEAALTLRALAEVDPTCVSGLITYGVTTLN 467 (1075)
Q Consensus 418 ~~~l~d~L~~lL~hps~svRi~AA~cLr~~~~a~Ps~l~~ll~~~~~~L~ 467 (1075)
+..+++.+++++..+-.-||-.|=.-|--++++++.++-|-++..+-.|-
T Consensus 660 ~snl~~lll~C~~D~~peVRQS~FALLGDltk~c~~~v~p~~~~fl~~lg 709 (885)
T KOG2023|consen 660 QSNLLDLLLQCLQDEVPEVRQSAFALLGDLTKACFEHVIPNLADFLPILG 709 (885)
T ss_pred hccHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHh
Confidence 45699999999999999999999888888999988888887777666654
No 9
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=97.54 E-value=0.059 Score=65.47 Aligned_cols=408 Identities=16% Similarity=0.152 Sum_probs=233.1
Q ss_pred CCCchhHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHhhcCCChhHhHHHHHHHHHHhccCCchhhHH-hHHHHHHh
Q 001448 33 SPDPLLCFDLLSDLISAIDEEPKESILLWQRKCEDALYSLLILGARRPVRHLASVAMGRIISKGDNISVYS-RVSSLQGF 111 (1075)
Q Consensus 33 ~~~~~~~~~wL~~L~~~l~~~~k~di~~~Q~~l~~~L~~ll~~~~g~P~R~l~a~cl~~ly~~GD~~~lf~-~vn~l~~~ 111 (1075)
+|+|...---|+.+-..- +++-+ ..+...+.+++. .+-|-+|+-++.|+.++|..... .+-+ -+..+..+
T Consensus 90 ~~n~~~~~lAL~~l~~i~---~~~~~----~~l~~~v~~ll~-~~~~~VRk~A~~~l~~i~~~~p~-~~~~~~~~~l~~l 160 (526)
T PF01602_consen 90 SPNPYIRGLALRTLSNIR---TPEMA----EPLIPDVIKLLS-DPSPYVRKKAALALLKIYRKDPD-LVEDELIPKLKQL 160 (526)
T ss_dssp SSSHHHHHHHHHHHHHH----SHHHH----HHHHHHHHHHHH-SSSHHHHHHHHHHHHHHHHHCHC-CHHGGHHHHHHHH
T ss_pred CCCHHHHHHHHhhhhhhc---ccchh----hHHHHHHHHHhc-CCchHHHHHHHHHHHHHhccCHH-HHHHHHHHHHhhh
Confidence 455555555555554432 22222 334556666655 56668999999999999987322 2222 36788888
Q ss_pred hhcCCCCChhhHHHHHHHHHHHHHHHhhHhhcCHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhcCCCCCchhHH--HH
Q 001448 112 LSDGKKSEPQKVAGAAQCLGELYRQFGRRITSGLLETTIIAAKLMKFNEEFVRQEALLLLQNALEGSGGSAAASAY--SE 189 (1075)
Q Consensus 112 l~~~k~~s~~~~~aA~~cLG~l~~~~G~~l~s~~~e~~~~llK~lK~~~~~~R~~~l~~L~kil~g~g~~~~~~~~--~d 189 (1075)
++ |.+|..+.+|+.++.++ +.-.+......+..+..+.+.++...+..+..+++.|.+... .. +... .+
T Consensus 161 L~---d~~~~V~~~a~~~l~~i-~~~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~----~~-~~~~~~~~ 231 (526)
T PF01602_consen 161 LS---DKDPSVVSAALSLLSEI-KCNDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAP----ME-PEDADKNR 231 (526)
T ss_dssp TT---HSSHHHHHHHHHHHHHH-HCTHHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTS----SS-HHHHHHHH
T ss_pred cc---CCcchhHHHHHHHHHHH-ccCcchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhccc----CC-hhhhhHHH
Confidence 85 66688888999999999 433444346677777777777787888899999988887433 22 2223 45
Q ss_pred HHHHHHHHhccCcchHHHHHHHHHHHHHHhhcCCCcccchhhhHhhHHhhhccCCChhHHHHHHHHHHHHHHhccCCCCc
Q 001448 190 AFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGGPCLGVGELDNSATHCVKAIEDPIASVRDAFAEALGSLLALGMNPQAQ 269 (1075)
Q Consensus 190 i~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~~~~~~~~dlE~l~sl~~K~le~s~~~vR~a~A~~La~lLa~~~~~~~~ 269 (1075)
+... ....+.+.+..|+..|++|+..+.... .-+..+.....+.+.+++.++|-.+-++|..+.... ++
T Consensus 232 ~i~~-l~~~l~s~~~~V~~e~~~~i~~l~~~~------~~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~--~~-- 300 (526)
T PF01602_consen 232 IIEP-LLNLLQSSSPSVVYEAIRLIIKLSPSP------ELLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSN--PP-- 300 (526)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHHHHHHHHSSSH------HHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHC--HH--
T ss_pred HHHH-HHHHhhccccHHHHHHHHHHHHhhcch------HHHHhhHHHHHHHhhcccchhehhHHHHHHHhhccc--ch--
Confidence 6663 555567889999999999988666542 145678899999999999999999999998877332 11
Q ss_pred CCCCCCCCCCCCCChhHHHHHHhhhhhcccCCCCcchhHHHHHHHHHHHHHHhcccccCCCcchhHHHHHHHHHhccCCC
Q 001448 270 VQPKGKGPFPPAKKLEGGLQRHLALPFTRANGAKSKNMRVNLTLSWVYFLQAIRLKYFHPDSELQDYALQVMDMLRADIF 349 (1075)
Q Consensus 270 ~~~~~k~~~~~~k~l~~~l~~~Ls~~f~k~~~~~~r~~R~Gv~~ayv~fl~~lg~~wle~~~~~~~~~~~i~~ll~~~~~ 349 (1075)
.+. ...+...|++... ...+|.-..+.-..+.. +.|...++..+...+. +.
T Consensus 301 -------------~v~---~~~~~~~~l~~~~--d~~Ir~~~l~lL~~l~~---------~~n~~~Il~eL~~~l~-~~- 351 (526)
T PF01602_consen 301 -------------AVF---NQSLILFFLLYDD--DPSIRKKALDLLYKLAN---------ESNVKEILDELLKYLS-EL- 351 (526)
T ss_dssp -------------HHG---THHHHHHHHHCSS--SHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHH-HC-
T ss_pred -------------hhh---hhhhhhheecCCC--ChhHHHHHHHHHhhccc---------ccchhhHHHHHHHHHH-hc-
Confidence 111 1122223555333 45565543333222222 1233344444444442 11
Q ss_pred CCHH-HHHHHHHHHHHhhhccCChHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHH
Q 001448 350 VDSH-ALACVLYILRIGVTDQMTEPTQRSFLVFLGKQLQAVDASPFMKIAALRTLSYTLKTLGEVPSEFKEVLDSTVVAA 428 (1075)
Q Consensus 350 ~~~~-~r~~v~~ILr~~v~~~L~E~~Q~~~~~~l~~~~~~~~~s~~~lv~aL~el~~Ll~~LGsa~~~~~~~l~d~L~~l 428 (1075)
.|.. .+..+.-| +...... ++.....+..+.+-+.. .+++..--+...+..++.. .+...+.+.+.++..
T Consensus 352 ~d~~~~~~~i~~I-~~la~~~--~~~~~~~v~~l~~ll~~--~~~~~~~~~~~~i~~ll~~----~~~~~~~~l~~L~~~ 422 (526)
T PF01602_consen 352 SDPDFRRELIKAI-GDLAEKF--PPDAEWYVDTLLKLLEI--SGDYVSNEIINVIRDLLSN----NPELREKILKKLIEL 422 (526)
T ss_dssp --HHHHHHHHHHH-HHHHHHH--GSSHHHHHHHHHHHHHC--TGGGCHCHHHHHHHHHHHH----STTTHHHHHHHHHHH
T ss_pred cchhhhhhHHHHH-HHHHhcc--CchHHHHHHHHHHhhhh--ccccccchHHHHHHHHhhc----ChhhhHHHHHHHHHH
Confidence 1232 33333333 3333222 11222223333332211 1122222333344444443 233345556666666
Q ss_pred hcC-CChHHHHHHHHHHHHHHHhCCc--chhhHHHHHHHHHHhhhhhcccccCCcccchhhhhchHHHHHHHHHhhcCCC
Q 001448 429 VSH-SSQLVRIEAALTLRALAEVDPT--CVSGLITYGVTTLNALRENVSFEKGSSLMVELDSLHGQATVVAALIFISPKL 505 (1075)
Q Consensus 429 L~h-ps~svRi~AA~cLr~~~~a~Ps--~l~~ll~~~~~~L~~~~~~l~~~~~~~~~~~~~~~~G~a~aLAALl~~~~~~ 505 (1075)
+.. ++..++-.++|++-.++...+. ....++..+.+..... ... =....+.++.......
T Consensus 423 l~~~~~~~~~~~~~wilGEy~~~~~~~~~~~~~~~~l~~~~~~~---------------~~~--vk~~ilt~~~Kl~~~~ 485 (526)
T PF01602_consen 423 LEDISSPEALAAAIWILGEYGELIENTESAPDILRSLIENFIEE---------------SPE--VKLQILTALAKLFKRN 485 (526)
T ss_dssp HTSSSSHHHHHHHHHHHHHHCHHHTTTTHHHHHHHHHHHHHTTS---------------HHH--HHHHHHHHHHHHHHHS
T ss_pred HHHhhHHHHHHHHHhhhcccCCcccccccHHHHHHHHHHhhccc---------------cHH--HHHHHHHHHHHHHhhC
Confidence 663 6667899999999999988887 4444444443333221 111 1234666666665433
Q ss_pred CCccCCchhHHHHHHHHHhhhc
Q 001448 506 PLGYPARLPKLVLEVSKKMLTE 527 (1075)
Q Consensus 506 pLgvp~~~~~~V~~~A~~LLk~ 527 (1075)
| +.+....++.+-.++.+.
T Consensus 486 ~---~~~~~~~i~~~~~~~~~~ 504 (526)
T PF01602_consen 486 P---ENEVQNEILQFLLSLATE 504 (526)
T ss_dssp C---STTHHHHHHHHHHCHHHH
T ss_pred C---chhhHHHHHHHHHHHhcc
Confidence 1 124555788888888774
No 10
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=97.53 E-value=0.0095 Score=77.51 Aligned_cols=120 Identities=24% Similarity=0.176 Sum_probs=91.9
Q ss_pred hHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHhhHhhcCHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhcCCCCCc
Q 001448 104 RVSSLQGFLSDGKKSEPQKVAGAAQCLGELYRQFGRRITSGLLETTIIAAKLMKFNEEFVRQEALLLLQNALEGSGGSAA 183 (1075)
Q Consensus 104 ~vn~l~~~l~~~k~~s~~~~~aA~~cLG~l~~~~G~~l~s~~~e~~~~llK~lK~~~~~~R~~~l~~L~kil~g~g~~~~ 183 (1075)
.++.|...|+ |++|..|.+|+..||+.. -++++..+.+.++..+..+|..+..+|.++.+... +
T Consensus 622 ~~~~L~~~L~---D~d~~VR~~Av~~L~~~~----------~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~---~ 685 (897)
T PRK13800 622 SVAELAPYLA---DPDPGVRRTAVAVLTETT----------PPGFGPALVAALGDGAAAVRRAAAEGLRELVEVLP---P 685 (897)
T ss_pred hHHHHHHHhc---CCCHHHHHHHHHHHhhhc----------chhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccC---c
Confidence 7778888886 778988889999999642 36677888999998999999999999988754322 1
Q ss_pred hhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhcCCCcccchhhhHhhHHhhhccCCChhHHHHHHHHHHHH
Q 001448 184 ASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGGPCLGVGELDNSATHCVKAIEDPIASVRDAFAEALGSL 259 (1075)
Q Consensus 184 ~~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~~~~~~~~dlE~l~sl~~K~le~s~~~vR~a~A~~La~l 259 (1075)
. + +....+.|.+..||.+|++.|..+-. .+.+ ...+.++++|..||.++++.|+.+
T Consensus 686 ~----~----~L~~~L~~~d~~VR~~A~~aL~~~~~--------~~~~----~l~~~L~D~d~~VR~~Av~aL~~~ 741 (897)
T PRK13800 686 A----P----ALRDHLGSPDPVVRAAALDVLRALRA--------GDAA----LFAAALGDPDHRVRIEAVRALVSV 741 (897)
T ss_pred h----H----HHHHHhcCCCHHHHHHHHHHHHhhcc--------CCHH----HHHHHhcCCCHHHHHHHHHHHhcc
Confidence 1 1 23334677888999999998877542 1222 456799999999999999999974
No 11
>PRK09687 putative lyase; Provisional
Probab=97.38 E-value=0.0099 Score=67.01 Aligned_cols=198 Identities=11% Similarity=-0.015 Sum_probs=122.2
Q ss_pred cCCCCchhHHHHHH-----HHHHHhccCChhhHHHHHHHH--------HHHHHHHhhcCCChhHhHHHHHHHHHHhccCC
Q 001448 31 QQSPDPLLCFDLLS-----DLISAIDEEPKESILLWQRKC--------EDALYSLLILGARRPVRHLASVAMGRIISKGD 97 (1075)
Q Consensus 31 ~~~~~~~~~~~wL~-----~L~~~l~~~~k~di~~~Q~~l--------~~~L~~ll~~~~g~P~R~l~a~cl~~ly~~GD 97 (1075)
++..++.|+++--. .|.++|...+...-...++.| .+.+.++ ...+-|-+|+..++.|+.+=..+.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~L~~~L~d~d~~vR~~A~~aL~~~~~~~~~~~l~~l-l~~~d~~vR~~A~~aLg~lg~~~~ 86 (280)
T PRK09687 8 RKASKEYSLYSQCKKLNDDELFRLLDDHNSLKRISSIRVLQLRGGQDVFRLAIEL-CSSKNPIERDIGADILSQLGMAKR 86 (280)
T ss_pred chhhHHHHHHHHHhhccHHHHHHHHhCCCHHHHHHHHHHHHhcCcchHHHHHHHH-HhCCCHHHHHHHHHHHHhcCCCcc
Confidence 33444555554332 455555444444433333332 2333332 356678889999999998632221
Q ss_pred chhhHHhHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHhhHhhcCHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhc
Q 001448 98 NISVYSRVSSLQGFLSDGKKSEPQKVAGAAQCLGELYRQFGRRITSGLLETTIIAAKLMKFNEEFVRQEALLLLQNALEG 177 (1075)
Q Consensus 98 ~~~lf~~vn~l~~~l~~~k~~s~~~~~aA~~cLG~l~~~~G~~l~s~~~e~~~~llK~lK~~~~~~R~~~l~~L~kil~g 177 (1075)
. .=+.+..|..++. +|.++..+..|+..||.+- .......+..+..+...++..+..+|..+..+|++
T Consensus 87 ~--~~~a~~~L~~l~~--~D~d~~VR~~A~~aLG~~~----~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~---- 154 (280)
T PRK09687 87 C--QDNVFNILNNLAL--EDKSACVRASAINATGHRC----KKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSV---- 154 (280)
T ss_pred c--hHHHHHHHHHHHh--cCCCHHHHHHHHHHHhccc----ccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhc----
Confidence 1 1123445554532 3667888878999999752 22222344556666677777788899999888854
Q ss_pred CCCCCchhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhcCCCcccchhhhHhhHHhhhccCCChhHHHHHHHHHH
Q 001448 178 SGGSAAASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGGPCLGVGELDNSATHCVKAIEDPIASVRDAFAEALG 257 (1075)
Q Consensus 178 ~g~~~~~~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~~~~~~~~dlE~l~sl~~K~le~s~~~vR~a~A~~La 257 (1075)
+| ++.....+.+ ++.|.+..||..|+..|..+-..+ +.......+.+++.|..||..++..||
T Consensus 155 ~~---~~~ai~~L~~-----~L~d~~~~VR~~A~~aLg~~~~~~---------~~~~~~L~~~L~D~~~~VR~~A~~aLg 217 (280)
T PRK09687 155 IN---DEAAIPLLIN-----LLKDPNGDVRNWAAFALNSNKYDN---------PDIREAFVAMLQDKNEEIRIEAIIGLA 217 (280)
T ss_pred cC---CHHHHHHHHH-----HhcCCCHHHHHHHHHHHhcCCCCC---------HHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 34 2333433333 477888899999999886661111 366777888889999999999999888
Q ss_pred H
Q 001448 258 S 258 (1075)
Q Consensus 258 ~ 258 (1075)
.
T Consensus 218 ~ 218 (280)
T PRK09687 218 L 218 (280)
T ss_pred c
Confidence 7
No 12
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.33 E-value=0.16 Score=66.48 Aligned_cols=421 Identities=20% Similarity=0.228 Sum_probs=241.1
Q ss_pred cccchhHHHHHHHHhhhccCCCCchhHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHhhcCCChhHhHHHHHHHHHH
Q 001448 13 SRFGVLVAQLESIVASASQQSPDPLLCFDLLSDLISAIDEEPKESILLWQRKCEDALYSLLILGARRPVRHLASVAMGRI 92 (1075)
Q Consensus 13 ~~~~~~~a~le~~~~~~~~~~~~~~~~~~wL~~L~~~l~~~~k~di~~~Q~~l~~~L~~ll~~~~g~P~R~l~a~cl~~l 92 (1075)
-++.++--.|+..+-+.. ++-|..-+ =||=.+.+++...+. +...-+++..+...++.. ---=+-...+|=|+-+
T Consensus 814 ~~~~~~~~~l~~~~~s~n-ph~R~A~~-VWLLs~vq~l~~~~~--v~l~~~eI~~aF~~~Lsd-~dEf~QDvAsrGlglV 888 (1702)
T KOG0915|consen 814 TRETIILKLLDTLLTSPN-PHERQAGC-VWLLSLVQYLGQQPE--VVLMLKEIQEAFSHLLSD-NDEFSQDVASRGLGLV 888 (1702)
T ss_pred ccHHHHHHHHHHhcCCCC-HHHHHHHH-HHHHHHHHHhccCch--hhhccHHHHHHHHHHhcc-cHHHHHHHHhcCceEE
Confidence 355666777777776664 33333222 266566666633222 222223333444333321 1122356688889999
Q ss_pred hccCCchhhHHhHHHHHHhhhcCCCCC------------------h----------------------------------
Q 001448 93 ISKGDNISVYSRVSSLQGFLSDGKKSE------------------P---------------------------------- 120 (1075)
Q Consensus 93 y~~GD~~~lf~~vn~l~~~l~~~k~~s------------------~---------------------------------- 120 (1075)
|+.||...==+-|+.|.+-+.+||+.. |
T Consensus 889 Yelgd~~~k~~LV~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASdl~qPdLVYKFM~LAnh~ 968 (1702)
T KOG0915|consen 889 YELGDSSLKKSLVDSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASDLGQPDLVYKFMQLANHN 968 (1702)
T ss_pred EecCCchhHHHHHHHHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhhcCChHHHHHHHHHhhhh
Confidence 999999999999999998887665331 1
Q ss_pred ---hhHHHHHHHHHHHHHHHhhHhhcCHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHH
Q 001448 121 ---QKVAGAAQCLGELYRQFGRRITSGLLETTIIAAKLMKFNEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRF 197 (1075)
Q Consensus 121 ---~~~~aA~~cLG~l~~~~G~~l~s~~~e~~~~llK~lK~~~~~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~ 197 (1075)
+.|.+|+.-+|.+.++.|..+-..+.-.+.=+.|+==.-...++ -+|..+=+++-.-...+.+-.+.||++-...
T Consensus 969 A~wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq-~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~- 1046 (1702)
T KOG0915|consen 969 ATWNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQ-DAMTSIWNALITDSKKVVDEYLNEILDELLV- 1046 (1702)
T ss_pred chhhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHH-HHHHHHHHHhccChHHHHHHHHHHHHHHHHH-
Confidence 03358999999999999999876666655544443111223333 4566665655544333434577777775344
Q ss_pred hccCcchHHHHHHHHHHHHHHhhcCCCc-ccchhhhHhhHHhhhccCCChhHHHH---HHHHHHHHHHhccCCCCcCCCC
Q 001448 198 AIVDKSFVVRIAGARCLKAFAHIGGPCL-GVGELDNSATHCVKAIEDPIASVRDA---FAEALGSLLALGMNPQAQVQPK 273 (1075)
Q Consensus 198 ~~~Dks~~Vr~aAa~cL~~l~~~~~~~~-~~~dlE~l~sl~~K~le~s~~~vR~a---~A~~La~lLa~~~~~~~~~~~~ 273 (1075)
.+++|..-||-|+|=.|..|.+. .|+- -...+-.+-...||++||--..||.| +++.|+.+.+....+. .
T Consensus 1047 ~lt~kewRVReasclAL~dLl~g-~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~-----~ 1120 (1702)
T KOG0915|consen 1047 NLTSKEWRVREASCLALADLLQG-RPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVT-----N 1120 (1702)
T ss_pred hccchhHHHHHHHHHHHHHHHcC-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC-----C
Confidence 38999999999999999999985 3432 22333357778999999999999987 4666777776666542 1
Q ss_pred CCCCCCCCCChhHHHHHHhhhhhcccCC--CCcchhHHHHHHHHHHHHHHhccc---------------ccCCCcchhHH
Q 001448 274 GKGPFPPAKKLEGGLQRHLALPFTRANG--AKSKNMRVNLTLSWVYFLQAIRLK---------------YFHPDSELQDY 336 (1075)
Q Consensus 274 ~k~~~~~~k~l~~~l~~~Ls~~f~k~~~--~~~r~~R~Gv~~ayv~fl~~lg~~---------------wle~~~~~~~~ 336 (1075)
++ +-.+++..+ -||+=..| +.-+++|.-..-..+.+...-|+. +-|-+..+-||
T Consensus 1121 ~~-------~~~~~l~~i--LPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~vLnY 1191 (1702)
T KOG0915|consen 1121 GA-------KGKEALDII--LPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELEPQVLNY 1191 (1702)
T ss_pred cc-------cHHHHHHHH--HHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccchHHHHH
Confidence 11 112222211 12322221 224555553333333333333321 11111122233
Q ss_pred HHH--------HHHHhccCC-CCCHH---HHHHHHHHHHHhhhccCChHHHHHHHHHHHhhcc-cCCCChhHHHHHHHHH
Q 001448 337 ALQ--------VMDMLRADI-FVDSH---ALACVLYILRIGVTDQMTEPTQRSFLVFLGKQLQ-AVDASPFMKIAALRTL 403 (1075)
Q Consensus 337 ~~~--------i~~ll~~~~-~~~~~---~r~~v~~ILr~~v~~~L~E~~Q~~~~~~l~~~~~-~~~~s~~~lv~aL~el 403 (1075)
+.- .+|-+..+. ...|- --.|+.|| +-+.-.++.-.+++-+. ++.. .+-+.+-+-+
T Consensus 1192 ls~r~~~~e~ealDt~R~s~aksspmmeTi~~ci~~i---------D~~vLeelip~l~el~R~sVgl--~Tkvg~A~fI 1260 (1702)
T KOG0915|consen 1192 LSLRLINIETEALDTLRASAAKSSPMMETINKCINYI---------DISVLEELIPRLTELVRGSVGL--GTKVGCASFI 1260 (1702)
T ss_pred HHHhhhhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhh---------hHHHHHHHHHHHHHHHhccCCC--CcchhHHHHH
Confidence 320 011110000 00000 12677776 11222334444444332 2222 2345555667
Q ss_pred HHHHHHhCCCchhhHHHHHHHHHHHhcCCChHHHHHHH-HHHHHHHHhCCcchhhHHHHHHHHH
Q 001448 404 SYTLKTLGEVPSEFKEVLDSTVVAAVSHSSQLVRIEAA-LTLRALAEVDPTCVSGLITYGVTTL 466 (1075)
Q Consensus 404 ~~Ll~~LGsa~~~~~~~l~d~L~~lL~hps~svRi~AA-~cLr~~~~a~Ps~l~~ll~~~~~~L 466 (1075)
..|..++|.--.+..+.+...++..+..-+.+||-+=| -|..-+-.+-|++...++...+..+
T Consensus 1261 ~~L~~r~~~emtP~sgKll~al~~g~~dRNesv~kafAsAmG~L~k~Ss~dq~qKLie~~l~~~ 1324 (1702)
T KOG0915|consen 1261 SLLVQRLGSEMTPYSGKLLRALFPGAKDRNESVRKAFASAMGYLAKFSSPDQMQKLIETLLADL 1324 (1702)
T ss_pred HHHHHHhccccCcchhHHHHHHhhccccccHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Confidence 78889999999999999999999999999999987644 4555555667778888876555544
No 13
>PRK09687 putative lyase; Provisional
Probab=97.30 E-value=0.0059 Score=68.80 Aligned_cols=162 Identities=20% Similarity=0.061 Sum_probs=118.1
Q ss_pred HHHHHHHHHHHhhcCCChhHhHHHHHHHHHHhccCCchhhHHhHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHhhHh
Q 001448 62 QRKCEDALYSLLILGARRPVRHLASVAMGRIISKGDNISVYSRVSSLQGFLSDGKKSEPQKVAGAAQCLGELYRQFGRRI 141 (1075)
Q Consensus 62 Q~~l~~~L~~ll~~~~g~P~R~l~a~cl~~ly~~GD~~~lf~~vn~l~~~l~~~k~~s~~~~~aA~~cLG~l~~~~G~~l 141 (1075)
|.+....|..++..-+-+-+|..++..|+.+-..+... .=..++.+...+. |+++..|.+|+..||. +
T Consensus 88 ~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~-~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~--------~ 155 (280)
T PRK09687 88 QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY-SPKIVEQSQITAF---DKSTNVRFAVAFALSV--------I 155 (280)
T ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc-chHHHHHHHHHhh---CCCHHHHHHHHHHHhc--------c
Confidence 44566677777677788999999999999985544311 1233445545444 6688888899999983 3
Q ss_pred hcCHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhc
Q 001448 142 TSGLLETTIIAAKLMKFNEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIG 221 (1075)
Q Consensus 142 ~s~~~e~~~~llK~lK~~~~~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~ 221 (1075)
+ -++.+..+++.++..+..+|..+..+|+++ +. .++.+..-+.+ ++.|....||.+|+.-|..+-.
T Consensus 156 ~--~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~----~~-~~~~~~~~L~~-----~L~D~~~~VR~~A~~aLg~~~~-- 221 (280)
T PRK09687 156 N--DEAAIPLLINLLKDPNGDVRNWAAFALNSN----KY-DNPDIREAFVA-----MLQDKNEEIRIEAIIGLALRKD-- 221 (280)
T ss_pred C--CHHHHHHHHHHhcCCCHHHHHHHHHHHhcC----CC-CCHHHHHHHHH-----HhcCCChHHHHHHHHHHHccCC--
Confidence 3 377999999999998889999999999997 21 22333333444 3799999999999887754322
Q ss_pred CCCcccchhhhHhhHHhhhccCCChhHHHHHHHHHHHHH
Q 001448 222 GPCLGVGELDNSATHCVKAIEDPIASVRDAFAEALGSLL 260 (1075)
Q Consensus 222 ~~~~~~~dlE~l~sl~~K~le~s~~~vR~a~A~~La~lL 260 (1075)
+.......+.+++++ +|..++.+||++-
T Consensus 222 ---------~~av~~Li~~L~~~~--~~~~a~~ALg~ig 249 (280)
T PRK09687 222 ---------KRVLSVLIKELKKGT--VGDLIIEAAGELG 249 (280)
T ss_pred ---------hhHHHHHHHHHcCCc--hHHHHHHHHHhcC
Confidence 367888889999876 7888999999865
No 14
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=97.22 E-value=0.94 Score=55.09 Aligned_cols=419 Identities=16% Similarity=0.094 Sum_probs=227.0
Q ss_pred HHHHHHHHhccCCchhhHHhHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHhhHhhcCHHHHHHHHHHHhccCcHHHH
Q 001448 85 ASVAMGRIISKGDNISVYSRVSSLQGFLSDGKKSEPQKVAGAAQCLGELYRQFGRRITSGLLETTIIAAKLMKFNEEFVR 164 (1075)
Q Consensus 85 ~a~cl~~ly~~GD~~~lf~~vn~l~~~l~~~k~~s~~~~~aA~~cLG~l~~~~G~~l~s~~~e~~~~llK~lK~~~~~~R 164 (1075)
++--....|...|.-.+.-.+|.++.=++ +..|..+..|+.+++.+- ...+ .+.....+.+++...++-+|
T Consensus 61 l~yl~l~~~~~~~~~~~~l~~n~l~kdl~---~~n~~~~~lAL~~l~~i~---~~~~---~~~l~~~v~~ll~~~~~~VR 131 (526)
T PF01602_consen 61 LGYLYLSLYLHEDPELLILIINSLQKDLN---SPNPYIRGLALRTLSNIR---TPEM---AEPLIPDVIKLLSDPSPYVR 131 (526)
T ss_dssp HHHHHHHHHTTTSHHHHHHHHHHHHHHHC---SSSHHHHHHHHHHHHHH----SHHH---HHHHHHHHHHHHHSSSHHHH
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHhhc---CCCHHHHHHHHhhhhhhc---ccch---hhHHHHHHHHHhcCCchHHH
Confidence 44455555666677777777887777665 456777778888888654 2222 35556667777777788899
Q ss_pred HHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhcCCCcccchhhhHhhHHhhhccCC
Q 001448 165 QEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGGPCLGVGELDNSATHCVKAIEDP 244 (1075)
Q Consensus 165 ~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~~~~~~~~dlE~l~sl~~K~le~s 244 (1075)
..+..++.++.+......... +.+ .....+.|++..|+.+|+.++.++ +.. +-....-+..+.....+.+...
T Consensus 132 k~A~~~l~~i~~~~p~~~~~~----~~~-~l~~lL~d~~~~V~~~a~~~l~~i-~~~-~~~~~~~~~~~~~~L~~~l~~~ 204 (526)
T PF01602_consen 132 KKAALALLKIYRKDPDLVEDE----LIP-KLKQLLSDKDPSVVSAALSLLSEI-KCN-DDSYKSLIPKLIRILCQLLSDP 204 (526)
T ss_dssp HHHHHHHHHHHHHCHCCHHGG----HHH-HHHHHTTHSSHHHHHHHHHHHHHH-HCT-HHHHTTHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHhccCHHHHHHH----HHH-HHhhhccCCcchhHHHHHHHHHHH-ccC-cchhhhhHHHHHHHhhhccccc
Confidence 999999999988744322211 333 244457888899999998888888 321 1111122333444444445677
Q ss_pred ChhHHHHHHHHHHHHHHhccCCCCcCCCCCCCCCCCCCCh--hHHHHHHhhhhhcccCCCCcchhHHHHHHHHHHHHHHh
Q 001448 245 IASVRDAFAEALGSLLALGMNPQAQVQPKGKGPFPPAKKL--EGGLQRHLALPFTRANGAKSKNMRVNLTLSWVYFLQAI 322 (1075)
Q Consensus 245 ~~~vR~a~A~~La~lLa~~~~~~~~~~~~~k~~~~~~k~l--~~~l~~~Ls~~f~k~~~~~~r~~R~Gv~~ayv~fl~~l 322 (1075)
++-.+..+.+++..+. +.... .. .+.+. .+. .+++.. +..|+..++.+...+
T Consensus 205 ~~~~q~~il~~l~~~~-----~~~~~------------~~~~~~~i~-~l~-~~l~s~---~~~V~~e~~~~i~~l---- 258 (526)
T PF01602_consen 205 DPWLQIKILRLLRRYA-----PMEPE------------DADKNRIIE-PLL-NLLQSS---SPSVVYEAIRLIIKL---- 258 (526)
T ss_dssp SHHHHHHHHHHHTTST-----SSSHH------------HHHHHHHHH-HHH-HHHHHH---HHHHHHHHHHHHHHH----
T ss_pred chHHHHHHHHHHHhcc-----cCChh------------hhhHHHHHH-HHH-HHhhcc---ccHHHHHHHHHHHHh----
Confidence 8777777777776422 11000 00 11222 111 122222 455655555554422
Q ss_pred cccccCCCc-chhHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhhhccCChHHH-HHHHHHHHhhcccCCCChhHHHHHH
Q 001448 323 RLKYFHPDS-ELQDYALQVMDMLRADIFVDSHALACVLYILRIGVTDQMTEPTQ-RSFLVFLGKQLQAVDASPFMKIAAL 400 (1075)
Q Consensus 323 g~~wle~~~-~~~~~~~~i~~ll~~~~~~~~~~r~~v~~ILr~~v~~~L~E~~Q-~~~~~~l~~~~~~~~~s~~~lv~aL 400 (1075)
. ++. ........+..++. +-+++.|..+--.|....... .+.-+ .......++ .+.+.+.-..+|
T Consensus 259 ~-----~~~~~~~~~~~~L~~lL~---s~~~nvr~~~L~~L~~l~~~~-~~~v~~~~~~~~~l~----~~~d~~Ir~~~l 325 (526)
T PF01602_consen 259 S-----PSPELLQKAINPLIKLLS---SSDPNVRYIALDSLSQLAQSN-PPAVFNQSLILFFLL----YDDDPSIRKKAL 325 (526)
T ss_dssp S-----SSHHHHHHHHHHHHHHHT---SSSHHHHHHHHHHHHHHCCHC-HHHHGTHHHHHHHHH----CSSSHHHHHHHH
T ss_pred h-----cchHHHHhhHHHHHHHhh---cccchhehhHHHHHHHhhccc-chhhhhhhhhhheec----CCCChhHHHHHH
Confidence 1 111 12355556666665 224554433222223333221 01111 111111111 344556666677
Q ss_pred HHHHHHHHHhCCCchhhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHHHHhCCcchhhHHHHHHHHHHhhhhhcccccCC
Q 001448 401 RTLSYTLKTLGEVPSEFKEVLDSTVVAAV-SHSSQLVRIEAALTLRALAEVDPTCVSGLITYGVTTLNALRENVSFEKGS 479 (1075)
Q Consensus 401 ~el~~Ll~~LGsa~~~~~~~l~d~L~~lL-~hps~svRi~AA~cLr~~~~a~Ps~l~~ll~~~~~~L~~~~~~l~~~~~~ 479 (1075)
+.+..+.. ..-...+.+.+...+ ..+...+|..+..++..++...|......++..++.++.....+
T Consensus 326 ~lL~~l~~------~~n~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~~~~~v~~l~~ll~~~~~~~------ 393 (526)
T PF01602_consen 326 DLLYKLAN------ESNVKEILDELLKYLSELSDPDFRRELIKAIGDLAEKFPPDAEWYVDTLLKLLEISGDYV------ 393 (526)
T ss_dssp HHHHHH--------HHHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSSHHHHHHHHHHHHHCTGGGC------
T ss_pred HHHhhccc------ccchhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhccCchHHHHHHHHHHhhhhccccc------
Confidence 76655543 233555778888888 56688899999999999999998888888877777776432111
Q ss_pred cccchhhhhchHHHHHHHHHhhcCCCCCccCCchhHHHHHHHHHhhhccCCchhhHHHHHHHHHHHHHHhhccCChhhHh
Q 001448 480 SLMVELDSLHGQATVVAALIFISPKLPLGYPARLPKLVLEVSKKMLTESSRNTLAATVEKEAGWLLLSSLLASMPKEELE 559 (1075)
Q Consensus 480 ~~~~~~~~~~G~a~aLAALl~~~~~~pLgvp~~~~~~V~~~A~~LLk~~~~~~~~a~~~~qagWiLi~sLmtl~g~~~Vk 559 (1075)
..--...+..++...+ +.-..++..-.+++......+ .+.-+.|++-- ...+.+ + .+
T Consensus 394 --------~~~~~~~i~~ll~~~~--------~~~~~~l~~L~~~l~~~~~~~----~~~~~~wilGE-y~~~~~-~-~~ 450 (526)
T PF01602_consen 394 --------SNEIINVIRDLLSNNP--------ELREKILKKLIELLEDISSPE----ALAAAIWILGE-YGELIE-N-TE 450 (526)
T ss_dssp --------HCHHHHHHHHHHHHST--------TTHHHHHHHHHHHHTSSSSHH----HHHHHHHHHHH-HCHHHT-T-TT
T ss_pred --------cchHHHHHHHHhhcCh--------hhhHHHHHHHHHHHHHhhHHH----HHHHHHhhhcc-cCCccc-c-cc
Confidence 1222345566665544 223344444455666533322 67888998633 222111 1 00
Q ss_pred hcHHHHHHHHHhhcCCCchhhhhhccchhHHHHHHHHHHHHHHHHHHh
Q 001448 560 DQVFDILSLWATLFSGNAEHIIKQHGDLTSKICVLSTAVDALTAFVRC 607 (1075)
Q Consensus 560 ~hlsqLLlLWk~~l~~s~k~~~~~~~e~~~~L~~r~~AL~aL~sFL~~ 607 (1075)
..+.++..--+.|. ++ ...++...+.++.-+...
T Consensus 451 -~~~~~~~~l~~~~~--------~~-----~~~vk~~ilt~~~Kl~~~ 484 (526)
T PF01602_consen 451 -SAPDILRSLIENFI--------EE-----SPEVKLQILTALAKLFKR 484 (526)
T ss_dssp -HHHHHHHHHHHHHT--------TS-----HHHHHHHHHHHHHHHHHH
T ss_pred -cHHHHHHHHHHhhc--------cc-----cHHHHHHHHHHHHHHHhh
Confidence 23333333333331 11 125888888888887765
No 15
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=97.05 E-value=0.26 Score=60.26 Aligned_cols=279 Identities=17% Similarity=0.138 Sum_probs=175.6
Q ss_pred HHHHHHHHHHHHHhhHhhcCHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhccCcch
Q 001448 125 GAAQCLGELYRQFGRRITSGLLETTIIAAKLMKFNEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVDKSF 204 (1075)
Q Consensus 125 aA~~cLG~l~~~~G~~l~s~~~e~~~~llK~lK~~~~~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~Dks~ 204 (1075)
.++.+|..+++.. ...+..+.....+.+.++..++.+|.-+++.++++++...+......-.+++.. .=.|+.|.+.
T Consensus 57 ~~~~iL~~~l~~~--~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~-i~~~L~~~d~ 133 (503)
T PF10508_consen 57 LICDILKRLLSAL--SPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPL-IIQCLRDPDL 133 (503)
T ss_pred HHHHHHHHHHhcc--CHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHH-HHHHHcCCcH
Confidence 5777899888855 233337888888999999999999999999999998866543322233567774 4456899999
Q ss_pred HHHHHHHHHHHHHHhhcCCCcccchhhhH-----hhHHhhhccCCChhHHHHHHHHHHHHHHhccCCCCcCCCCCCCCCC
Q 001448 205 VVRIAGARCLKAFAHIGGPCLGVGELDNS-----ATHCVKAIEDPIASVRDAFAEALGSLLALGMNPQAQVQPKGKGPFP 279 (1075)
Q Consensus 205 ~Vr~aAa~cL~~l~~~~~~~~~~~dlE~l-----~sl~~K~le~s~~~vR~a~A~~La~lLa~~~~~~~~~~~~~k~~~~ 279 (1075)
.|...|++.|..+.++. + .++.+ .+-..+.+..+|+.+|.-+-+++..+....
T Consensus 134 ~Va~~A~~~L~~l~~~~-~-----~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S---------------- 191 (503)
T PF10508_consen 134 SVAKAAIKALKKLASHP-E-----GLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHS---------------- 191 (503)
T ss_pred HHHHHHHHHHHHHhCCc-h-----hHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcC----------------
Confidence 99999999999999863 2 22333 555666666678899999999888876221
Q ss_pred CCCChhHHHHHHhhhh----hcccCCCCcch--hHHHHHHHHHHHHHH-hcccccCCCcchhHHHHHHHHHhccCCCCCH
Q 001448 280 PAKKLEGGLQRHLALP----FTRANGAKSKN--MRVNLTLSWVYFLQA-IRLKYFHPDSELQDYALQVMDMLRADIFVDS 352 (1075)
Q Consensus 280 ~~k~l~~~l~~~Ls~~----f~k~~~~~~r~--~R~Gv~~ayv~fl~~-lg~~wle~~~~~~~~~~~i~~ll~~~~~~~~ 352 (1075)
++.+.....+| .++.-. +.| +|..+.+....+-.. -|..|+++ ..+...+.+++.+ ...|+
T Consensus 192 -----~~~~~~~~~sgll~~ll~eL~--~dDiLvqlnalell~~La~~~~g~~yL~~----~gi~~~L~~~l~~-~~~dp 259 (503)
T PF10508_consen 192 -----PEAAEAVVNSGLLDLLLKELD--SDDILVQLNALELLSELAETPHGLQYLEQ----QGIFDKLSNLLQD-SEEDP 259 (503)
T ss_pred -----HHHHHHHHhccHHHHHHHHhc--CccHHHHHHHHHHHHHHHcChhHHHHHHh----CCHHHHHHHHHhc-cccCC
Confidence 12111111111 111112 355 466666666666554 56677765 4566677777763 23333
Q ss_pred --HH------HHHHHHHHHHhhhccCChHHH-----HHHHHHHHhhcccCCCChhHHHHHHHHHHHHHHHhCCCchh---
Q 001448 353 --HA------LACVLYILRIGVTDQMTEPTQ-----RSFLVFLGKQLQAVDASPFMKIAALRTLSYTLKTLGEVPSE--- 416 (1075)
Q Consensus 353 --~~------r~~v~~ILr~~v~~~L~E~~Q-----~~~~~~l~~~~~~~~~s~~~lv~aL~el~~Ll~~LGsa~~~--- 416 (1075)
.. -++...+.+ . .+.+ ..++..+-+..++.|+ -...+|++.+|.+ |++...
T Consensus 260 ~~~~~~l~g~~~f~g~la~------~-~~~~v~~~~p~~~~~l~~~~~s~d~--~~~~~A~dtlg~i----gst~~G~~~ 326 (503)
T PF10508_consen 260 RLSSLLLPGRMKFFGNLAR------V-SPQEVLELYPAFLERLFSMLESQDP--TIREVAFDTLGQI----GSTVEGKQL 326 (503)
T ss_pred cccchhhhhHHHHHHHHHh------c-ChHHHHHHHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHH----hCCHHHHHH
Confidence 11 133333322 1 2222 2333344433344444 4568888888844 655431
Q ss_pred -------hHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHhCCc
Q 001448 417 -------FKEVLDSTVVAAVSHSSQLVRIEAALTLRALAEVDPT 453 (1075)
Q Consensus 417 -------~~~~l~d~L~~lL~hps~svRi~AA~cLr~~~~a~Ps 453 (1075)
....+.........++..-+|+.+-.||..+...-+.
T Consensus 327 L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~ 370 (503)
T PF10508_consen 327 LLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTD 370 (503)
T ss_pred HHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCC
Confidence 1234566777778888888999998888888755444
No 16
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=96.88 E-value=0.47 Score=57.26 Aligned_cols=329 Identities=15% Similarity=0.146 Sum_probs=203.8
Q ss_pred HHHHHHHHHHHHHHhhcCCChhHhHHHHHHHHHHhcc----CCchhhHHhHHHHHHhhhcCC-CCChhhH---HHHHHHH
Q 001448 59 LLWQRKCEDALYSLLILGARRPVRHLASVAMGRIISK----GDNISVYSRVSSLQGFLSDGK-KSEPQKV---AGAAQCL 130 (1075)
Q Consensus 59 ~~~Q~~l~~~L~~ll~~~~g~P~R~l~a~cl~~ly~~----GD~~~lf~~vn~l~~~l~~~k-~~s~~~~---~aA~~cL 130 (1075)
|.+-..++.+..++++. ++|-+|.-.|+-++.|-.+ |++. ..++|..+|-.+= .++|..+ +.|++|+
T Consensus 599 kp~l~~ivStiL~~L~~-k~p~vR~~aadl~~sl~~vlk~c~e~~----~l~klg~iLyE~lge~ypEvLgsil~Ai~~I 673 (975)
T COG5181 599 KPHLSMIVSTILKLLRS-KPPDVRIRAADLMGSLAKVLKACGETK----ELAKLGNILYENLGEDYPEVLGSILKAICSI 673 (975)
T ss_pred CcchHHHHHHHHHHhcC-CCccHHHHHHHHHHHHHHHHHhcchHH----HHHHHhHHHHHhcCcccHHHHHHHHHHHHHH
Confidence 44555677777777654 5556677666665554433 6654 6677887776221 5567655 4566655
Q ss_pred HHHHHHHh-hHhhcCHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhccC----cchH
Q 001448 131 GELYRQFG-RRITSGLLETTIIAAKLMKFNEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVD----KSFV 205 (1075)
Q Consensus 131 G~l~~~~G-~~l~s~~~e~~~~llK~lK~~~~~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~D----ks~~ 205 (1075)
|-.+| |++-.-...+...+.-.+|+.|-.+-......+++|+.....-+. .|+-.+..+ .+-| -.-.
T Consensus 674 ---~sv~~~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~---~rEWMRIcf--eLvd~Lks~nKe 745 (975)
T COG5181 674 ---YSVHRFRSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIG---VREWMRICF--ELVDSLKSWNKE 745 (975)
T ss_pred ---hhhhcccccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCC---HHHHHHHHH--HHHHHHHHhhHH
Confidence 44455 445556666777788889998888888888889998885553222 444222111 1223 2346
Q ss_pred HHHHHHHHHHHHHhhcCCCcccchhhhHhhHHhhhccCCChhHHHHHHHHHHHHHHhccCCCCcCCCCCCCCCCCCCChh
Q 001448 206 VRIAGARCLKAFAHIGGPCLGVGELDNSATHCVKAIEDPIASVRDAFAEALGSLLALGMNPQAQVQPKGKGPFPPAKKLE 285 (1075)
Q Consensus 206 Vr~aAa~cL~~l~~~~~~~~~~~dlE~l~sl~~K~le~s~~~vR~a~A~~La~lLa~~~~~~~~~~~~~k~~~~~~k~l~ 285 (1075)
+|++|-+.+.-+.+.-+| . .+..+.+-.++...-+-|...+-.+|-+. .++-|= ..++
T Consensus 746 iRR~A~~tfG~Is~aiGP----q---dvL~~LlnnLkvqeRq~RvctsvaI~iVa-e~cgpf--------------sVlP 803 (975)
T COG5181 746 IRRNATETFGCISRAIGP----Q---DVLDILLNNLKVQERQQRVCTSVAISIVA-EYCGPF--------------SVLP 803 (975)
T ss_pred HHHhhhhhhhhHHhhcCH----H---HHHHHHHhcchHHHHHhhhhhhhhhhhhH-hhcCch--------------hhHH
Confidence 888887666555554223 2 35555666677777777776666665443 333221 0122
Q ss_pred HHHHHHhhhhhcccCCCCcchhHHHHHHHHHHHHHHhcccccCCCcchh-HHHHHHHHHhcc-CCCCCHHHHHHHHHHHH
Q 001448 286 GGLQRHLALPFTRANGAKSKNMRVNLTLSWVYFLQAIRLKYFHPDSELQ-DYALQVMDMLRA-DIFVDSHALACVLYILR 363 (1075)
Q Consensus 286 ~~l~~~Ls~~f~k~~~~~~r~~R~Gv~~ayv~fl~~lg~~wle~~~~~~-~~~~~i~~ll~~-~~~~~~~~r~~v~~ILr 363 (1075)
.|.+-|-.+ .-.|..||--|..+||...|. .+ +|.--|.-++.. =..-|+.-|.....++|
T Consensus 804 -----~lm~dY~TP----e~nVQnGvLkam~fmFeyig~--------~s~dYvy~itPlleDAltDrD~vhRqta~nvI~ 866 (975)
T COG5181 804 -----TLMSDYETP----EANVQNGVLKAMCFMFEYIGQ--------ASLDYVYSITPLLEDALTDRDPVHRQTAMNVIR 866 (975)
T ss_pred -----HHHhcccCc----hhHHHHhHHHHHHHHHHHHHH--------HHHHHHHHhhHHHHhhhcccchHHHHHHHHHHH
Confidence 233445444 367888999999999999982 23 777666666652 23345666666666667
Q ss_pred Hhhhc---cCChHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHhcCCChHHHHHH
Q 001448 364 IGVTD---QMTEPTQRSFLVFLGKQLQAVDASPFMKIAALRTLSYTLKTLGEVPSEFKEVLDSTVVAAVSHSSQLVRIEA 440 (1075)
Q Consensus 364 ~~v~~---~L~E~~Q~~~~~~l~~~~~~~~~s~~~lv~aL~el~~Ll~~LGsa~~~~~~~l~d~L~~lL~hps~svRi~A 440 (1075)
..+.. ...|.+-..++..|+-.+ -|++||+.-...+-+-++-..||+.+ +..-+.+=|-||+-+||-.
T Consensus 867 Hl~Lnc~gtg~eda~IHLlNllwpNI--le~sPhvi~~~~Eg~e~~~~~lg~g~------~m~Yv~qGLFHPs~~VRk~- 937 (975)
T COG5181 867 HLVLNCPGTGDEDAAIHLLNLLWPNI--LEPSPHVIQSFDEGMESFATVLGSGA------MMKYVQQGLFHPSSTVRKR- 937 (975)
T ss_pred HHhcCCCCcccHHHHHHHHHHhhhhc--cCCCcHHHHHHHHHHHHHHHHhccHH------HHHHHHHhccCchHHHHHH-
Confidence 66622 224445555555554433 68899999999999999999998643 4677888899999999953
Q ss_pred HHHHHHHH
Q 001448 441 ALTLRALA 448 (1075)
Q Consensus 441 A~cLr~~~ 448 (1075)
=|+.-...
T Consensus 938 ywtvyn~m 945 (975)
T COG5181 938 YWTVYNIM 945 (975)
T ss_pred HHHHHhhh
Confidence 34433333
No 17
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=96.78 E-value=0.34 Score=59.26 Aligned_cols=359 Identities=15% Similarity=0.121 Sum_probs=186.4
Q ss_pred HHHHHhccCChhhHHHHHHHHHHHHHHHhhcCCChhHhHHHHHHHHHHhccCCc-------hhhHHhHHHHHHhhhcCCC
Q 001448 45 DLISAIDEEPKESILLWQRKCEDALYSLLILGARRPVRHLASVAMGRIISKGDN-------ISVYSRVSSLQGFLSDGKK 117 (1075)
Q Consensus 45 ~L~~~l~~~~k~di~~~Q~~l~~~L~~ll~~~~g~P~R~l~a~cl~~ly~~GD~-------~~lf~~vn~l~~~l~~~k~ 117 (1075)
-|++.+...+.+++ ..+..+.|..-|.+ |-|.+|.+..+.+.++-...+. ..+|. .+...|. +
T Consensus 61 iL~~~l~~~~~~~l---~~~~~~~L~~gL~h-~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~---~i~~~L~---~ 130 (503)
T PF10508_consen 61 ILKRLLSALSPDSL---LPQYQPFLQRGLTH-PSPKVRRLALKQLGRIARHSEGAAQLLVDNELLP---LIIQCLR---D 130 (503)
T ss_pred HHHHHHhccCHHHH---HHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHH---HHHHHHc---C
Confidence 46777777777776 44555666655554 7789999999988887655433 22333 3334443 3
Q ss_pred CChhhHHHHHHHHHHHHHHHhhHhhcC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhcCCCCCchhHHHH--HHHHH
Q 001448 118 SEPQKVAGAAQCLGELYRQFGRRITSG-LLETTIIAAKLMKFNEEFVRQEALLLLQNALEGSGGSAAASAYSE--AFRLI 194 (1075)
Q Consensus 118 ~s~~~~~aA~~cLG~l~~~~G~~l~s~-~~e~~~~llK~lK~~~~~~R~~~l~~L~kil~g~g~~~~~~~~~d--i~K~~ 194 (1075)
.+....-.|+.+|..+-+.-... -.. -++....+-+++++..+.+|..++.++-++.+...... ....+ ++..+
T Consensus 131 ~d~~Va~~A~~~L~~l~~~~~~~-~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~--~~~~~sgll~~l 207 (503)
T PF10508_consen 131 PDLSVAKAAIKALKKLASHPEGL-EQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAA--EAVVNSGLLDLL 207 (503)
T ss_pred CcHHHHHHHHHHHHHHhCCchhH-HHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHH--HHHHhccHHHHH
Confidence 33333335666666554321111 011 11125556666766578889999998888876544333 23333 67765
Q ss_pred HHHhccCcchHHHHHHHHHHHHHHhh--cCCCc-ccchhhhHhhHHhhhccCC-ChhHHH-HHHHHHHHHHHhccCCCCc
Q 001448 195 MRFAIVDKSFVVRIAGARCLKAFAHI--GGPCL-GVGELDNSATHCVKAIEDP-IASVRD-AFAEALGSLLALGMNPQAQ 269 (1075)
Q Consensus 195 ~r~~~~Dks~~Vr~aAa~cL~~l~~~--~~~~~-~~~dlE~l~sl~~K~le~s-~~~vR~-a~A~~La~lLa~~~~~~~~ 269 (1075)
.+. +.|.+..||..|++++..|+.. +..|+ ..+=++.+.......-+++ ...... ..-+.+|.+... .|..
T Consensus 208 l~e-L~~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~--~~~~- 283 (503)
T PF10508_consen 208 LKE-LDSDDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARV--SPQE- 283 (503)
T ss_pred HHH-hcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhc--ChHH-
Confidence 554 7789999999999999999884 22334 4566667777777776666 222221 122344443321 1110
Q ss_pred CCCCCCCCCCCCCChhHHHHHHhhhhhcccCCCCcchhHHHHHHHHHHHHHHh-cccccCCCcchhHHHHHHHHHhcc--
Q 001448 270 VQPKGKGPFPPAKKLEGGLQRHLALPFTRANGAKSKNMRVNLTLSWVYFLQAI-RLKYFHPDSELQDYALQVMDMLRA-- 346 (1075)
Q Consensus 270 ~~~~~k~~~~~~k~l~~~l~~~Ls~~f~k~~~~~~r~~R~Gv~~ayv~fl~~l-g~~wle~~~~~~~~~~~i~~ll~~-- 346 (1075)
-....++.+. .+- .+..+. ....|..-.+++..+=... |...|.. ....-+.+++.....
T Consensus 284 ----------v~~~~p~~~~-~l~-~~~~s~---d~~~~~~A~dtlg~igst~~G~~~L~~--~~~~~~~~~l~~~~~~~ 346 (503)
T PF10508_consen 284 ----------VLELYPAFLE-RLF-SMLESQ---DPTIREVAFDTLGQIGSTVEGKQLLLQ--KQGPAMKHVLKAIGDAI 346 (503)
T ss_pred ----------HHHHHHHHHH-HHH-HHhCCC---ChhHHHHHHHHHHHHhCCHHHHHHHHh--hcchHHHHHHHHHHHHh
Confidence 0001222222 111 112222 3455555556666554332 3222300 001112233333331
Q ss_pred -CCCCCHH--HHHHHHHHHHHhhhccCChHHHHHHHHHHHhhcc---cCCCChhHHHHHHHHHHHHHHHhCCCchhhHHH
Q 001448 347 -DIFVDSH--ALACVLYILRIGVTDQMTEPTQRSFLVFLGKQLQ---AVDASPFMKIAALRTLSYTLKTLGEVPSEFKEV 420 (1075)
Q Consensus 347 -~~~~~~~--~r~~v~~ILr~~v~~~L~E~~Q~~~~~~l~~~~~---~~~~s~~~lv~aL~el~~Ll~~LGsa~~~~~~~ 420 (1075)
+...+-. +..|+..||...- -.+..|. ..+.+.|= ..++... .++.-+..-++++.-+
T Consensus 347 ~~~~~~lk~r~l~al~~il~~~~---~~~~~~i---~~~~~~w~~~~~~~~~~~----------~l~~~~~qPF~elr~a 410 (503)
T PF10508_consen 347 KSGSTELKLRALHALASILTSGT---DRQDNDI---LSITESWYESLSGSPLSN----------LLMSLLKQPFPELRCA 410 (503)
T ss_pred cCCchHHHHHHHHHHHHHHhcCC---CCchHHH---HHHHHHHHHHhcCCchHH----------HHHHHhcCCchHHHHH
Confidence 2221222 2366777763221 1122222 13333331 1222111 2333334455888888
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHHHhCCcchhhHHHHHH
Q 001448 421 LDSTVVAAVSHSSQLVRIEAALTLRALAEVDPTCVSGLITYGV 463 (1075)
Q Consensus 421 l~d~L~~lL~hps~svRi~AA~cLr~~~~a~Ps~l~~ll~~~~ 463 (1075)
....+..+..|| ||.+.++ +.|..+.-++++-.
T Consensus 411 ~~~~l~~l~~~~---------Wg~~~i~-~~~gfie~lldr~~ 443 (503)
T PF10508_consen 411 AYRLLQALAAQP---------WGQREIC-SSPGFIEYLLDRST 443 (503)
T ss_pred HHHHHHHHhcCH---------HHHHHHH-hCccHHhhhcCCCC
Confidence 888888888887 8888866 45776666665443
No 18
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.73 E-value=1.5 Score=52.91 Aligned_cols=377 Identities=15% Similarity=0.072 Sum_probs=214.1
Q ss_pred HHHHhccCChhhHHHHHHHHHHHHHHHhhcCCChhHhH--HHHHHHHHHh-ccCCchhhHHhHHHHHHhhhcCCCCChhh
Q 001448 46 LISAIDEEPKESILLWQRKCEDALYSLLILGARRPVRH--LASVAMGRII-SKGDNISVYSRVSSLQGFLSDGKKSEPQK 122 (1075)
Q Consensus 46 L~~~l~~~~k~di~~~Q~~l~~~L~~ll~~~~g~P~R~--l~a~cl~~ly-~~GD~~~lf~~vn~l~~~l~~~k~~s~~~ 122 (1075)
+||.+...--.+=..+-+++.++|-+=...+|-+|-|+ |+|-+-+.+- +.-|..-+-.-+--...-.+ |.+-..
T Consensus 24 lEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~Y~~~iv~Pv~~cf~---D~d~~v 100 (675)
T KOG0212|consen 24 LEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAGYLEKIVPPVLNCFS---DQDSQV 100 (675)
T ss_pred HHHHHHHHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccccHHHHHHhhHHHHHhcc---Ccccee
Confidence 34444333334444555677777776667777777776 3444433332 22232211111111222221 222233
Q ss_pred HHHHHHHHHHHHHHHhhHhhcCHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhccCc
Q 001448 123 VAGAAQCLGELYRQFGRRITSGLLETTIIAAKLMKFNEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVDK 202 (1075)
Q Consensus 123 ~~aA~~cLG~l~~~~G~~l~s~~~e~~~~llK~lK~~~~~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~Dk 202 (1075)
|.-|+.-|=.+-+..-..+...|+++...+.|+....+..+|..+ .++...++.+-..-+.+.+-+.+-...|--+.+.
T Consensus 101 RyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~a-eLLdRLikdIVte~~~tFsL~~~ipLL~eriy~~ 179 (675)
T KOG0212|consen 101 RYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGGA-ELLDRLIKDIVTESASTFSLPEFIPLLRERIYVI 179 (675)
T ss_pred eeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccccccHH-HHHHHHHHHhccccccccCHHHHHHHHHHHHhcC
Confidence 334777777777777778889999999999999998666555322 2333333322211122344444443566667788
Q ss_pred chHHHHHHHHHHHHHHhhcCCCc-ccchhhhHhhHHhhhccCCChhHHHHHHHHHHHHHHhccCCCCcCCCCCCCCCCCC
Q 001448 203 SFVVRIAGARCLKAFAHIGGPCL-GVGELDNSATHCVKAIEDPIASVRDAFAEALGSLLALGMNPQAQVQPKGKGPFPPA 281 (1075)
Q Consensus 203 s~~Vr~aAa~cL~~l~~~~~~~~-~~~dlE~l~sl~~K~le~s~~~vR~a~A~~La~lLa~~~~~~~~~~~~~k~~~~~~ 281 (1075)
.+.+|..-.+=+..|.. . |.+ --+=+..+..-.|+.+.+++.+||.-.-.+++++|..-.+.+. +-
T Consensus 180 n~~tR~flv~Wl~~Lds-~-P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~-----s~------ 246 (675)
T KOG0212|consen 180 NPMTRQFLVSWLYVLDS-V-PDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPS-----SM------ 246 (675)
T ss_pred CchHHHHHHHHHHHHhc-C-CcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCcc-----cc------
Confidence 99999988865555544 3 444 2233456788899999999999999999999999976554221 10
Q ss_pred CChhHHHHHHhhhhhcccCCCCcchhHHHHHHHHHHHHHHhcccccCCCcchhHHHHHHHHHhccCCCCCHHHHHHHHHH
Q 001448 282 KKLEGGLQRHLALPFTRANGAKSKNMRVNLTLSWVYFLQAIRLKYFHPDSELQDYALQVMDMLRADIFVDSHALACVLYI 361 (1075)
Q Consensus 282 k~l~~~l~~~Ls~~f~k~~~~~~r~~R~Gv~~ayv~fl~~lg~~wle~~~~~~~~~~~i~~ll~~~~~~~~~~r~~v~~I 361 (1075)
..+|... .+..+- .+ +..+++- .+.-|+.-|-.+++.-+=. ..+.++..++..++..... .-+.+.++
T Consensus 247 -d~~~~i~-vlv~~l---~s-s~~~iq~-~al~Wi~efV~i~g~~~l~--~~s~il~~iLpc~s~~e~~---~i~~~a~~ 314 (675)
T KOG0212|consen 247 -DYDDMIN-VLVPHL---QS-SEPEIQL-KALTWIQEFVKIPGRDLLL--YLSGILTAILPCLSDTEEM---SIKEYAQM 314 (675)
T ss_pred -Ccccchh-hccccc---cC-CcHHHHH-HHHHHHHHHhcCCCcchhh--hhhhhhhhcccCCCCCccc---cHHHHHHH
Confidence 1222222 222111 10 0122221 2244554444433222211 1122333333333321111 22333333
Q ss_pred HHHhhhccCChHHH------HHHHHHHHhhcccCCCChhHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHhcCCChH
Q 001448 362 LRIGVTDQMTEPTQ------RSFLVFLGKQLQAVDASPFMKIAALRTLSYTLKTLGEVPSEFKEVLDSTVVAAVSHSSQL 435 (1075)
Q Consensus 362 Lr~~v~~~L~E~~Q------~~~~~~l~~~~~~~~~s~~~lv~aL~el~~Ll~~LGsa~~~~~~~l~d~L~~lL~hps~s 435 (1075)
.+..+.++.+|..- +.++..+.+++ .+.+.++-+++|.-+..|...-+.---...+.+-++|+.-|+.+|.-
T Consensus 315 ~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l--~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~ 392 (675)
T KOG0212|consen 315 VNGLLLKLVSSERLKEEIDYGSIIEVLTKYL--SDDREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDE 392 (675)
T ss_pred HHHHHHHHHhhhhhccccchHHHHHHHHHHh--hcchHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhH
Confidence 34344444443322 35555555554 44566889999999999998877766667889999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCc
Q 001448 436 VRIEAALTLRALAEVDPT 453 (1075)
Q Consensus 436 vRi~AA~cLr~~~~a~Ps 453 (1075)
|=.-+-..|..+|..--+
T Consensus 393 vvl~~L~lla~i~~s~~~ 410 (675)
T KOG0212|consen 393 VVLLALSLLASICSSSNS 410 (675)
T ss_pred HHHHHHHHHHHHhcCccc
Confidence 999999999999966444
No 19
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=96.66 E-value=0.7 Score=53.01 Aligned_cols=242 Identities=13% Similarity=0.088 Sum_probs=137.7
Q ss_pred hhHHhHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHH--HhhHhhcCHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhc
Q 001448 100 SVYSRVSSLQGFLSDGKKSEPQKVAGAAQCLGELYRQ--FGRRITSGLLETTIIAAKLMKFNEEFVRQEALLLLQNALEG 177 (1075)
Q Consensus 100 ~lf~~vn~l~~~l~~~k~~s~~~~~aA~~cLG~l~~~--~G~~l~s~~~e~~~~llK~lK~~~~~~R~~~l~~L~kil~g 177 (1075)
.+++.+..+.+-+. +.+.+.|.+|+.-+-.++.. ..+.+..-....+..+.|.+|+....=+.-+.+++.=++-.
T Consensus 40 ~~e~~L~~~Id~l~---eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~lt 116 (309)
T PF05004_consen 40 DLEDKLKEAIDLLT---EKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALT 116 (309)
T ss_pred HHHHHHHHHHHHHH---hcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhh
Confidence 34444445555554 33477888888888888764 56777777888999999999985444455666667766666
Q ss_pred CCCCC-chhHHHHHHHHHHHHhccCcc--hHHHHHHHHHHHHHHhhcCCCcccchhh---hHhhHHhhhc----cCC---
Q 001448 178 SGGSA-AASAYSEAFRLIMRFAIVDKS--FVVRIAGARCLKAFAHIGGPCLGVGELD---NSATHCVKAI----EDP--- 244 (1075)
Q Consensus 178 ~g~~~-~~~~~~di~K~~~r~~~~Dks--~~Vr~aAa~cL~~l~~~~~~~~~~~dlE---~l~sl~~K~l----e~s--- 244 (1075)
+|.+. .+.+++++.. .++..+.|.+ ..+|.+++.||..+.--++. ...+.+ .....+|... ++.
T Consensus 117 lg~g~~~~ei~~~~~~-~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~--d~~~~~~~~~~le~if~~~~~~~~~~~~~ 193 (309)
T PF05004_consen 117 LGAGEDSEEIFEELKP-VLKRILTDSSASPKARAACLEALAICTFVGGS--DEEETEELMESLESIFLLSILKSDGNAPV 193 (309)
T ss_pred cCCCccHHHHHHHHHH-HHHHHHhCCccchHHHHHHHHHHHHHHHhhcC--ChhHHHHHHHHHHHHHHHHhcCcCCCccc
Confidence 66333 4567888777 5677778844 56777778888665442211 223333 2233223321 221
Q ss_pred -----ChhHHHHHHHHHHHHHHhccCCCCcCCCCCCCCCCCCCChhHHHHHHhhhhhcccCCCCcchhHHHHHHHHHHHH
Q 001448 245 -----IASVRDAFAEALGSLLALGMNPQAQVQPKGKGPFPPAKKLEGGLQRHLALPFTRANGAKSKNMRVNLTLSWVYFL 319 (1075)
Q Consensus 245 -----~~~vR~a~A~~La~lLa~~~~~~~~~~~~~k~~~~~~k~l~~~l~~~Ls~~f~k~~~~~~r~~R~Gv~~ayv~fl 319 (1075)
+..+..++=.++|-++ +..|... -...+++.+. .|+. ++.+. ..+||++-.++.+.++
T Consensus 194 ~~~~~~~~l~~aAL~aW~lLl--t~~~~~~----------~~~~~~~~~~-~l~~-lL~s~---d~~VRiAAGEaiAll~ 256 (309)
T PF05004_consen 194 VAAEDDAALVAAALSAWALLL--TTLPDSK----------LEDLLEEALP-ALSE-LLDSD---DVDVRIAAGEAIALLY 256 (309)
T ss_pred ccCCCccHHHHHHHHHHHHHH--hcCCHHH----------HHHHHHHHHH-HHHH-HhcCC---CHHHHHHHHHHHHHHH
Confidence 3456666666776655 2222200 0001233333 2332 44444 7999999999988887
Q ss_pred HHhcc---cccCCCcchhHHHHHHHHHhc-cCCCCCHHHHHHHHHHHHHhh
Q 001448 320 QAIRL---KYFHPDSELQDYALQVMDMLR-ADIFVDSHALACVLYILRIGV 366 (1075)
Q Consensus 320 ~~lg~---~wle~~~~~~~~~~~i~~ll~-~~~~~~~~~r~~v~~ILr~~v 366 (1075)
-.... .|..+ +.+.....+.++.. .+.+..-.-||--.-.+|+++
T Consensus 257 E~~~~~~~~~~~~--~~~~l~~~l~~La~dS~K~~sKkdrk~qRs~Frdil 305 (309)
T PF05004_consen 257 ELARDHEEDFLYE--DMEELLEQLRELATDSSKSRSKKDRKQQRSSFRDIL 305 (309)
T ss_pred HHhhccccccccc--CHHHHHHHHHHHHHhccCccchhHHHHHHHHHHHHH
Confidence 77542 34333 33455544444444 223333334566666666665
No 20
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=96.55 E-value=1.9 Score=53.27 Aligned_cols=335 Identities=15% Similarity=0.168 Sum_probs=194.4
Q ss_pred CChhHhHHHHHHHHHHhccCCchhhHHhHH-HH-HHhhhcC-CCCChhhHHHHHHHHHHHHHHHhhHhhcCHHHHHHHHH
Q 001448 77 ARRPVRHLASVAMGRIISKGDNISVYSRVS-SL-QGFLSDG-KKSEPQKVAGAAQCLGELYRQFGRRITSGLLETTIIAA 153 (1075)
Q Consensus 77 ~g~P~R~l~a~cl~~ly~~GD~~~lf~~vn-~l-~~~l~~~-k~~s~~~~~aA~~cLG~l~~~~G~~l~s~~~e~~~~ll 153 (1075)
-++|-|+..+...-++++.--+..+=++.. .+ -+++.+= .++.... --+-++|.+-.++|..+--..+-+|+.++
T Consensus 728 e~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~--vml~gfg~V~~~lg~r~kpylpqi~stiL 805 (1172)
T KOG0213|consen 728 EPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDS--VMLLGFGTVVNALGGRVKPYLPQICSTIL 805 (1172)
T ss_pred ccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchh--hhhhhHHHHHHHHhhccccchHHHHHHHH
Confidence 556678888887777777522222212111 11 1122110 0111111 24678999999999999999999999999
Q ss_pred HHhccCcHHHHHHHHHHH---HHHHhcCCC----------------CCchhHHHHHHHHHHHHhc---------------
Q 001448 154 KLMKFNEEFVRQEALLLL---QNALEGSGG----------------SAAASAYSEAFRLIMRFAI--------------- 199 (1075)
Q Consensus 154 K~lK~~~~~~R~~~l~~L---~kil~g~g~----------------~~~~~~~~di~K~~~r~~~--------------- 199 (1075)
+.+++..+.+|..+..+. .+|++.+|. .-++.+..-|.+ ++++..
T Consensus 806 ~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylgeeypEvLgsILg-AikaI~nvigm~km~pPi~dl 884 (1172)
T KOG0213|consen 806 WRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLGEEYPEVLGSILG-AIKAIVNVIGMTKMTPPIKDL 884 (1172)
T ss_pred HHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcCcccHHHHHHHHH-HHHHHHHhccccccCCChhhh
Confidence 999998888998876654 455555521 123345555555 344432
Q ss_pred --------cCcchHHHHHHHHHHHHHHhhcCCCcccchhhhHhhHHhhhccC---CChhHHHHHHHHHHHHHHhccCCCC
Q 001448 200 --------VDKSFVVRIAGARCLKAFAHIGGPCLGVGELDNSATHCVKAIED---PIASVRDAFAEALGSLLALGMNPQA 268 (1075)
Q Consensus 200 --------~Dks~~Vr~aAa~cL~~l~~~~~~~~~~~dlE~l~sl~~K~le~---s~~~vR~a~A~~La~lLa~~~~~~~ 268 (1075)
..|---|+..+++-+..+...++.|...-| -..+||-.+|. -+.+.|+++-..+|.+. ++.-|..
T Consensus 885 lPrltPILknrheKVqen~IdLvg~IadrgpE~v~aRE---WMRIcfeLlelLkahkK~iRRaa~nTfG~Ia-kaIGPqd 960 (1172)
T KOG0213|consen 885 LPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSARE---WMRICFELLELLKAHKKEIRRAAVNTFGYIA-KAIGPQD 960 (1172)
T ss_pred cccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH-HhcCHHH
Confidence 223335777777777777776544443333 24567766664 78899999999988765 3332221
Q ss_pred cC-----CCCC-CCCCCCCCChhHHH----------HHHhhhhhcccCCCCcchhHHHHHHHHHHHHHHhcccccCCCcc
Q 001448 269 QV-----QPKG-KGPFPPAKKLEGGL----------QRHLALPFTRANGAKSKNMRVNLTLSWVYFLQAIRLKYFHPDSE 332 (1075)
Q Consensus 269 ~~-----~~~~-k~~~~~~k~l~~~l----------~~~Ls~~f~k~~~~~~r~~R~Gv~~ayv~fl~~lg~~wle~~~~ 332 (1075)
.- .-|. -++++---++.-++ +--|..-|--+ .-.|..||--+..+||...| +
T Consensus 961 VLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pFtVLPalmneYrtP----e~nVQnGVLkalsf~Feyig--------e 1028 (1172)
T KOG0213|consen 961 VLATLLNNLKVQERQNRVCTTVAIAIVAETCGPFTVLPALMNEYRTP----EANVQNGVLKALSFMFEYIG--------E 1028 (1172)
T ss_pred HHHHHHhcchHHHHHhchhhhhhhhhhhhhcCchhhhHHHHhhccCc----hhHHHHhHHHHHHHHHHHHH--------H
Confidence 00 0000 01111000010000 00122223222 45788899999999999988 2
Q ss_pred hh-HHHHHHHHHhcc-CCCCCHHHHHHHHHHHHHhh-h--ccCChHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHH
Q 001448 333 LQ-DYALQVMDMLRA-DIFVDSHALACVLYILRIGV-T--DQMTEPTQRSFLVFLGKQLQAVDASPFMKIAALRTLSYTL 407 (1075)
Q Consensus 333 ~~-~~~~~i~~ll~~-~~~~~~~~r~~v~~ILr~~v-~--~~L~E~~Q~~~~~~l~~~~~~~~~s~~~lv~aL~el~~Ll 407 (1075)
.. +|.--+.-++.. =..-|..-|.....+++... + ...-|.+-..++..++-.+ -|++||+.-...+.+-++=
T Consensus 1029 mskdYiyav~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~~g~g~eda~iHLLN~iWpNI--le~sPhviqa~~e~~eg~r 1106 (1172)
T KOG0213|consen 1029 MSKDYIYAVTPLLEDALMDRDLVHRQTAMNVIKHLALGVPGTGCEDALIHLLNLIWPNI--LETSPHVIQAFDEAMEGLR 1106 (1172)
T ss_pred HhhhHHHHhhHHHHHhhccccHHHHHHHHHHHHHHhcCCCCcCcHHHHHHHHHHhhhhh--cCCChHHHHHHHHHHHHHH
Confidence 33 777555555551 11223444433223323333 2 2334444455555554332 6889999999999999999
Q ss_pred HHhCCCchhhHHHHHHHHHHHhcCCChHHHH
Q 001448 408 KTLGEVPSEFKEVLDSTVVAAVSHSSQLVRI 438 (1075)
Q Consensus 408 ~~LGsa~~~~~~~l~d~L~~lL~hps~svRi 438 (1075)
..||.. .+..-+++=|-||+..||-
T Consensus 1107 ~~Lg~~------~~~~Y~~QGLFHParkVR~ 1131 (1172)
T KOG0213|consen 1107 VALGPQ------AMLKYCLQGLFHPARKVRK 1131 (1172)
T ss_pred HHhchH------HHHHHHHHhccCcHHHHHH
Confidence 999863 3466788889999999994
No 21
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=96.55 E-value=0.067 Score=63.48 Aligned_cols=118 Identities=21% Similarity=0.114 Sum_probs=88.4
Q ss_pred HHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHhhHhhcCHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhcCCCCCch
Q 001448 105 VSSLQGFLSDGKKSEPQKVAGAAQCLGELYRQFGRRITSGLLETTIIAAKLMKFNEEFVRQEALLLLQNALEGSGGSAAA 184 (1075)
Q Consensus 105 vn~l~~~l~~~k~~s~~~~~aA~~cLG~l~~~~G~~l~s~~~e~~~~llK~lK~~~~~~R~~~l~~L~kil~g~g~~~~~ 184 (1075)
+..+.+.+. +.++..+.+++..||. + .-+.....+.+.++..|+.+|..++.++.. -+
T Consensus 88 ~~~L~~~L~---d~~~~vr~aaa~ALg~--------i--~~~~a~~~L~~~L~~~~p~vR~aal~al~~----r~----- 145 (410)
T TIGR02270 88 LRSVLAVLQ---AGPEGLCAGIQAALGW--------L--GGRQAEPWLEPLLAASEPPGRAIGLAALGA----HR----- 145 (410)
T ss_pred HHHHHHHhc---CCCHHHHHHHHHHHhc--------C--CchHHHHHHHHHhcCCChHHHHHHHHHHHh----hc-----
Confidence 567777775 5566678889999984 2 356678889999999999999999977776 11
Q ss_pred hHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhcCCCcccchhhhHhhHHhhhccCCChhHHHHHHHHHHHH
Q 001448 185 SAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGGPCLGVGELDNSATHCVKAIEDPIASVRDAFAEALGSL 259 (1075)
Q Consensus 185 ~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~~~~~~~~dlE~l~sl~~K~le~s~~~vR~a~A~~La~l 259 (1075)
.|-++ ..+.+++|.+..||.+|++|+..+-.. .....+.+++.+.|..||.+++..++.+
T Consensus 146 ---~~~~~-~L~~~L~d~d~~Vra~A~raLG~l~~~-----------~a~~~L~~al~d~~~~VR~aA~~al~~l 205 (410)
T TIGR02270 146 ---HDPGP-ALEAALTHEDALVRAAALRALGELPRR-----------LSESTLRLYLRDSDPEVRFAALEAGLLA 205 (410)
T ss_pred ---cChHH-HHHHHhcCCCHHHHHHHHHHHHhhccc-----------cchHHHHHHHcCCCHHHHHHHHHHHHHc
Confidence 11234 345557899999999999999777653 2223344789999999999999988654
No 22
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=96.53 E-value=0.012 Score=55.73 Aligned_cols=94 Identities=20% Similarity=0.199 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhcCCCcccchhhhHhhHHhhhcc
Q 001448 163 VRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGGPCLGVGELDNSATHCVKAIE 242 (1075)
Q Consensus 163 ~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~~~~~~~~dlE~l~sl~~K~le 242 (1075)
.|...|.+|+++..++|... +....+|.+-+. .+++|.+.-||.+||++|..+.+....-+ ..-|+.+-...+|.+.
T Consensus 2 ~R~ggli~Laa~ai~l~~~~-~~~l~~Il~pVL-~~~~D~d~rVRy~AcEaL~ni~k~~~~~~-l~~f~~IF~~L~kl~~ 78 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDI-SKYLDEILPPVL-KCFDDQDSRVRYYACEALYNISKVARGEI-LPYFNEIFDALCKLSA 78 (97)
T ss_pred chhHHHHHHHHHHHHchHhH-HHHHHHHHHHHH-HHcCCCcHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHc
Confidence 48889999999999999765 467899999655 56999999999999999999998742211 2256778889999999
Q ss_pred CCChhHHHHHHHHHHHHH
Q 001448 243 DPIASVRDAFAEALGSLL 260 (1075)
Q Consensus 243 ~s~~~vR~a~A~~La~lL 260 (1075)
|++..||.++ +.|-.+|
T Consensus 79 D~d~~Vr~~a-~~Ld~ll 95 (97)
T PF12755_consen 79 DPDENVRSAA-ELLDRLL 95 (97)
T ss_pred CCchhHHHHH-HHHHHHh
Confidence 9999999876 5555544
No 23
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=96.50 E-value=0.55 Score=64.92 Aligned_cols=335 Identities=17% Similarity=0.144 Sum_probs=193.7
Q ss_pred HHHHHHhhcCCChhHhHHHHHHHHHHhccCCchhhHHhHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHhhH----hh
Q 001448 67 DALYSLLILGARRPVRHLASVAMGRIISKGDNISVYSRVSSLQGFLSDGKKSEPQKVAGAAQCLGELYRQFGRR----IT 142 (1075)
Q Consensus 67 ~~L~~ll~~~~g~P~R~l~a~cl~~ly~~GD~~~lf~~vn~l~~~l~~~k~~s~~~~~aA~~cLG~l~~~~G~~----l~ 142 (1075)
..|.+++..+ .+=+++.++..|..+-..||.. .+..+.+++. .+++..+..++..+|.+....... .+
T Consensus 533 ppLV~LL~sg-d~~~q~~Aa~AL~nLi~~~d~~----~I~~Lv~LLl---sdd~~~~~~aL~vLgnIlsl~~~~d~~~~g 604 (2102)
T PLN03200 533 PALLWLLKNG-GPKGQEIAAKTLTKLVRTADAA----TISQLTALLL---GDLPESKVHVLDVLGHVLSVASLEDLVREG 604 (2102)
T ss_pred HHHHHHHhCC-CHHHHHHHHHHHHHHHhccchh----HHHHHHHHhc---CCChhHHHHHHHHHHHHHhhcchhHHHHHh
Confidence 3555665544 3445788888888888888886 4466777775 234555555788888776522221 11
Q ss_pred cCHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhcC
Q 001448 143 SGLLETTIIAAKLMKFNEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGG 222 (1075)
Q Consensus 143 s~~~e~~~~llK~lK~~~~~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~~ 222 (1075)
......+..+.+++++.+...+..+..++.++..|-.+-...-+-.++..-..+. +.+....|+..||.+|.++++..
T Consensus 605 ~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~L-Lss~~~~v~keAA~AL~nL~~~~- 682 (2102)
T PLN03200 605 SAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKL-LTNNTEAVATQSARALAALSRSI- 682 (2102)
T ss_pred hhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHH-HhcCChHHHHHHHHHHHHHHhCC-
Confidence 1223567788999998888888899999999988554322222223333333333 66788899999999999999742
Q ss_pred CCcccch-hh-hHhhHHhhhccCCChhHHHHHHHHHHHHHHhccCCCCcCCCCCCCCCCCCCChhHHHHHHhhhhhcccC
Q 001448 223 PCLGVGE-LD-NSATHCVKAIEDPIASVRDAFAEALGSLLALGMNPQAQVQPKGKGPFPPAKKLEGGLQRHLALPFTRAN 300 (1075)
Q Consensus 223 ~~~~~~d-lE-~l~sl~~K~le~s~~~vR~a~A~~La~lLa~~~~~~~~~~~~~k~~~~~~k~l~~~l~~~Ls~~f~k~~ 300 (1075)
..-+... .+ .......+.+.+.|..++..++..|+.++-...... ...-++.+. .| ..++|.+
T Consensus 683 ~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~~-------------ei~~~~~I~-~L-v~lLr~G 747 (2102)
T PLN03200 683 KENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVAA-------------EALAEDIIL-PL-TRVLREG 747 (2102)
T ss_pred CHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHHH-------------HHHhcCcHH-HH-HHHHHhC
Confidence 1100000 11 245556778888999999999999999883211100 000011111 00 1133333
Q ss_pred CCCcchhHHHHHHHHHHHHHHhcccccCCCcchhHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhhhccCChHHHHHHHH
Q 001448 301 GAKSKNMRVNLTLSWVYFLQAIRLKYFHPDSELQDYALQVMDMLRADIFVDSHALACVLYILRIGVTDQMTEPTQRSFLV 380 (1075)
Q Consensus 301 ~~~~r~~R~Gv~~ayv~fl~~lg~~wle~~~~~~~~~~~i~~ll~~~~~~~~~~r~~v~~ILr~~v~~~L~E~~Q~~~~~ 380 (1075)
+-+.|-..+.+...+ ..+.+ ++..- ..++- +.-+..
T Consensus 748 ---~~~~k~~Aa~AL~~L-------------------------~~~~~-~~~~~---~~~~~------------~~g~v~ 783 (2102)
T PLN03200 748 ---TLEGKRNAARALAQL-------------------------LKHFP-VDDVL---KDSVQ------------CRGTVL 783 (2102)
T ss_pred ---ChHHHHHHHHHHHHH-------------------------HhCCC-hhHHH---HHHHH------------HhCcHH
Confidence 233333332222222 22111 11100 00000 011222
Q ss_pred HHHhhcccCCCChhHHHHHHHHHHHHHHHhCCC----chhh---HH--HHHHHHHHHhcCCChHHHHHHHHHHHHHHHhC
Q 001448 381 FLGKQLQAVDASPFMKIAALRTLSYTLKTLGEV----PSEF---KE--VLDSTVVAAVSHSSQLVRIEAALTLRALAEVD 451 (1075)
Q Consensus 381 ~l~~~~~~~~~s~~~lv~aL~el~~Ll~~LGsa----~~~~---~~--~l~d~L~~lL~hps~svRi~AA~cLr~~~~a~ 451 (1075)
.+...+++.|...-...-+|+.++.|.+. |+. .++. .| .=.|+|+++|.|.+..++=-|-..|-.+|.--
T Consensus 784 ~l~~~L~~~~~~~~~~~~al~~l~~l~~~-~~~~~~~~~~~~~~~e~p~~l~~l~~~l~~~~p~~~~kai~il~~~~~~~ 862 (2102)
T PLN03200 784 ALVDLLNSTDLDSSATSEALEALALLART-KGGANFSHPPWAVLAEVPSSLEPLVRCLAEGHPLVQDKAIEILSRLCRDQ 862 (2102)
T ss_pred HHHHHHhcCCcchhhHHHHHHHHHHHHhh-cccCCCCCCchhhHHhccCchHHHHHHHHcCChHHHHHHHHHHHHHhccC
Confidence 33333334454443444567777666662 221 1221 22 13578999999999999999999999999999
Q ss_pred CcchhhHHHHHHHHHHhhhh
Q 001448 452 PTCVSGLITYGVTTLNALRE 471 (1075)
Q Consensus 452 Ps~l~~ll~~~~~~L~~~~~ 471 (1075)
|.-+..+|.+.-.|+.++-.
T Consensus 863 ~~~~~~~~~~~~~~~~~~~~ 882 (2102)
T PLN03200 863 PVVLGDLIANASKCISSLAD 882 (2102)
T ss_pred hhHHHHHHhcccchHHHHHH
Confidence 99999999877777766643
No 24
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.32 E-value=6 Score=51.67 Aligned_cols=196 Identities=16% Similarity=0.167 Sum_probs=120.9
Q ss_pred HhHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHhhHhhcCHHHHHHHHHHHhcc---CcHHHHHHHHHHHHHHHhcCC
Q 001448 103 SRVSSLQGFLSDGKKSEPQKVAGAAQCLGELYRQFGRRITSGLLETTIIAAKLMKF---NEEFVRQEALLLLQNALEGSG 179 (1075)
Q Consensus 103 ~~vn~l~~~l~~~k~~s~~~~~aA~~cLG~l~~~~G~~l~s~~~e~~~~llK~lK~---~~~~~R~~~l~~L~kil~g~g 179 (1075)
|+++.+.+++... ..+.+.+-.++.||+.+-.+.+-..-+ ++-+.+-+.-++-. +.+-+|.++.+.+..||.|--
T Consensus 93 ~~~~~l~~~~~~~-stn~svlr~~iscL~~lLraQd~~aW~-~~~t~~~~~~il~~~~h~~pkvRk~a~~~i~~VL~~p~ 170 (1176)
T KOG1248|consen 93 DTLNILAPFLTAE-STNGSVLRLAISCLEDLLRAQDASAWS-YSSTKTELFGILAFAAHKKPKVRKAAQRGIAAVLKGPP 170 (1176)
T ss_pred HHHHHHHHHHhhh-cccchHHHHHHHHHHHHHHHcchhhhc-cccHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHcCCC
Confidence 4677788888632 333344447999999999998877766 55555555555543 356799999999999999876
Q ss_pred CCCchhHHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHHhhcCCC--cccchhhhHhhHHhhhccCCChhHHHHHHHHH
Q 001448 180 GSAAASAYSEAFRLIMRFAIVD-KSFVVRIAGARCLKAFAHIGGPC--LGVGELDNSATHCVKAIEDPIASVRDAFAEAL 256 (1075)
Q Consensus 180 ~~~~~~~~~di~K~~~r~~~~D-ks~~Vr~aAa~cL~~l~~~~~~~--~~~~dlE~l~sl~~K~le~s~~~vR~a~A~~L 256 (1075)
-+-+ +.|--+.- .++.|+.- .+..--......+..|.--.+++ |-...+|.+...|++.+-.++..|+..+=+|+
T Consensus 171 ~~~~-~~HpA~~~-vak~cl~~~e~~~~~a~~t~v~~~L~Ll~~~~~~~p~~li~sl~e~lL~i~~~s~v~v~~~~~q~l 248 (1176)
T KOG1248|consen 171 FAPD-AEHPASLS-VAKFCLALIESKLGSAENTTVLRSLMLLRDVLSTFPRPLIKSLCEVLLNITTESPVLVLLEVLQCL 248 (1176)
T ss_pred CCcc-ccchHHHH-HHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhhcccchHHHHHHHHHHH
Confidence 4332 22333222 23333222 11111111123333322212233 34789999999999999999999999999999
Q ss_pred HHHHHhccCCCCcCCCCCCCCCCCCCChhHHH-HHHhhhhhcccCCCCcchhHHHHHHHHHHHHHHhc
Q 001448 257 GSLLALGMNPQAQVQPKGKGPFPPAKKLEGGL-QRHLALPFTRANGAKSKNMRVNLTLSWVYFLQAIR 323 (1075)
Q Consensus 257 a~lLa~~~~~~~~~~~~~k~~~~~~k~l~~~l-~~~Ls~~f~k~~~~~~r~~R~Gv~~ayv~fl~~lg 323 (1075)
..+. +.+.+ .++.+. .++|...|-..- .+.+.=++.+|+..+....
T Consensus 249 ~~lf-~~~~~----------------~l~a~~~a~lL~al~~l~p----s~~D~~~t~~W~~v~~~~~ 295 (1176)
T KOG1248|consen 249 HSLF-KKHPT----------------ALAAELNARLLTALMTLSP----SENDDLLTVAWLKVLNEAH 295 (1176)
T ss_pred HHHH-hcCCC----------------cchHHHHHHHHHHHHHhCC----CccchHHHHHHHHHHHHHH
Confidence 9877 33322 233322 225566664442 3555667888888877643
No 25
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=96.31 E-value=0.08 Score=69.11 Aligned_cols=158 Identities=23% Similarity=0.198 Sum_probs=83.6
Q ss_pred HHHHHhhcCCChhHhHHHHHHHHHHhccCCchhhHHhHHHHHHhhhcCCCCChhhHHHHHHHHHHHH-------------
Q 001448 68 ALYSLLILGARRPVRHLASVAMGRIISKGDNISVYSRVSSLQGFLSDGKKSEPQKVAGAAQCLGELY------------- 134 (1075)
Q Consensus 68 ~L~~ll~~~~g~P~R~l~a~cl~~ly~~GD~~~lf~~vn~l~~~l~~~k~~s~~~~~aA~~cLG~l~------------- 134 (1075)
.|...+. .+-|.+|..+.+.|..+- .|+.. .+...++ |.++..|.+|+..||.+=
T Consensus 688 ~L~~~L~-~~d~~VR~~A~~aL~~~~-~~~~~-------~l~~~L~---D~d~~VR~~Av~aL~~~~~~~~l~~~l~D~~ 755 (897)
T PRK13800 688 ALRDHLG-SPDPVVRAAALDVLRALR-AGDAA-------LFAAALG---DPDHRVRIEAVRALVSVDDVESVAGAATDEN 755 (897)
T ss_pred HHHHHhc-CCCHHHHHHHHHHHHhhc-cCCHH-------HHHHHhc---CCCHHHHHHHHHHHhcccCcHHHHHHhcCCC
Confidence 3444443 355667777777777653 23321 2223333 445555556666666420
Q ss_pred ----HHHhh---HhhcCHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhccCcchHHH
Q 001448 135 ----RQFGR---RITSGLLETTIIAAKLMKFNEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVDKSFVVR 207 (1075)
Q Consensus 135 ----~~~G~---~l~s~~~e~~~~llK~lK~~~~~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~Dks~~Vr 207 (1075)
..+.+ .++..-...+..+.+.++..++.+|.+++.+|.++ |... ..... ...++.|.+..||
T Consensus 756 ~~VR~~aa~aL~~~~~~~~~~~~~L~~ll~D~d~~VR~aA~~aLg~~----g~~~--~~~~~-----l~~aL~d~d~~VR 824 (897)
T PRK13800 756 REVRIAVAKGLATLGAGGAPAGDAVRALTGDPDPLVRAAALAALAEL----GCPP--DDVAA-----ATAALRASAWQVR 824 (897)
T ss_pred HHHHHHHHHHHHHhccccchhHHHHHHHhcCCCHHHHHHHHHHHHhc----CCcc--hhHHH-----HHHHhcCCChHHH
Confidence 00111 11111222345566666666677777777777663 3211 11111 2223666667777
Q ss_pred HHHHHHHHHHHhhcCCCcccchhhhHhhHHhhhccCCChhHHHHHHHHHHHH
Q 001448 208 IAGARCLKAFAHIGGPCLGVGELDNSATHCVKAIEDPIASVRDAFAEALGSL 259 (1075)
Q Consensus 208 ~aAa~cL~~l~~~~~~~~~~~dlE~l~sl~~K~le~s~~~vR~a~A~~La~l 259 (1075)
.+|++.|..+-. +.......+.+++++..||.+++..||.+
T Consensus 825 ~~Aa~aL~~l~~-----------~~a~~~L~~~L~D~~~~VR~~A~~aL~~~ 865 (897)
T PRK13800 825 QGAARALAGAAA-----------DVAVPALVEALTDPHLDVRKAAVLALTRW 865 (897)
T ss_pred HHHHHHHHhccc-----------cchHHHHHHHhcCCCHHHHHHHHHHHhcc
Confidence 777776644322 13446667777777777888877777774
No 26
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.29 E-value=4.9 Score=50.26 Aligned_cols=181 Identities=12% Similarity=0.026 Sum_probs=127.7
Q ss_pred CChhHhHHHHHHHHHHhccCCchhhHHhHHHHHHhhhcCC-CCChh-hHHHHHHHHHHHHHHHh-hHhhcCHHHHHHHHH
Q 001448 77 ARRPVRHLASVAMGRIISKGDNISVYSRVSSLQGFLSDGK-KSEPQ-KVAGAAQCLGELYRQFG-RRITSGLLETTIIAA 153 (1075)
Q Consensus 77 ~g~P~R~l~a~cl~~ly~~GD~~~lf~~vn~l~~~l~~~k-~~s~~-~~~aA~~cLG~l~~~~G-~~l~s~~~e~~~~ll 153 (1075)
|-|-.+...|.|++.|=..-=.-.+|- .+...+.++- +..+. .|-+.+..+|-+-+..- +-+.....+++.++.
T Consensus 102 ~ep~~~s~Aaq~va~IA~~ElP~n~wp---~li~~lv~nv~~~~~~~~k~~slealGyice~i~pevl~~~sN~iLtaIv 178 (859)
T KOG1241|consen 102 PEPRRPSSAAQCVAAIACIELPQNQWP---ELIVTLVSNVGEEQASMVKESSLEALGYICEDIDPEVLEQQSNDILTAIV 178 (859)
T ss_pred CCCCccchHHHHHHHHHHhhCchhhCH---HHHHHHHHhcccccchHHHHHHHHHHHHHHccCCHHHHHHHHhHHHHHHH
Confidence 445557789999999877655555565 3333333222 22232 45689999999988665 466677888999999
Q ss_pred HHhccC--cHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhcCCCcccchhh
Q 001448 154 KLMKFN--EEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGGPCLGVGELD 231 (1075)
Q Consensus 154 K~lK~~--~~~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~~~~~~~~dlE 231 (1075)
-.++++ .+.+|-+++.+|-..++-.+.--....-|+++=++.=-+.+-.+..||.||..||-.+..-...|+-..=.+
T Consensus 179 ~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~ 258 (859)
T KOG1241|consen 179 QGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQ 258 (859)
T ss_pred hhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999885 467999999999999997773333234555554444444566778999999999988776443455333334
Q ss_pred hHhhHHhhhccCCChhHHHHHHHHHHHHH
Q 001448 232 NSATHCVKAIEDPIASVRDAFAEALGSLL 260 (1075)
Q Consensus 232 ~l~sl~~K~le~s~~~vR~a~A~~La~lL 260 (1075)
.+..+-.+++-+.|++|-.-.-+-+..+.
T Consensus 259 alfaitl~amks~~deValQaiEFWstic 287 (859)
T KOG1241|consen 259 ALFAITLAAMKSDNDEVALQAIEFWSTIC 287 (859)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 78899999999999999888888887665
No 27
>PTZ00429 beta-adaptin; Provisional
Probab=96.28 E-value=3.9 Score=52.31 Aligned_cols=160 Identities=16% Similarity=0.033 Sum_probs=102.8
Q ss_pred hhHhHHHHHHHHHHhccC-CchhhHHhHHHHHHhhhcCCCCChhhHHHHHHHHHHHHH-HHhhHhhcCHHHHHHHHHHHh
Q 001448 79 RPVRHLASVAMGRIISKG-DNISVYSRVSSLQGFLSDGKKSEPQKVAGAAQCLGELYR-QFGRRITSGLLETTIIAAKLM 156 (1075)
Q Consensus 79 ~P~R~l~a~cl~~ly~~G-D~~~lf~~vn~l~~~l~~~k~~s~~~~~aA~~cLG~l~~-~~G~~l~s~~~e~~~~llK~l 156 (1075)
.-.|+..-+.+......| |-..+|-.|- ..+. .+| -..+|+ +.+|- .+++.--...-.+++.+.|-+
T Consensus 46 ~~~kk~alKkvIa~mt~G~DvS~LF~dVv---k~~~-S~d-~elKKL------vYLYL~~ya~~~pelalLaINtl~KDl 114 (746)
T PTZ00429 46 SYRKKAAVKRIIANMTMGRDVSYLFVDVV---KLAP-STD-LELKKL------VYLYVLSTARLQPEKALLAVNTFLQDT 114 (746)
T ss_pred HHHHHHHHHHHHHHHHCCCCchHHHHHHH---HHhC-CCC-HHHHHH------HHHHHHHHcccChHHHHHHHHHHHHHc
Confidence 344555666666666655 4555565333 3343 222 223332 33333 344444444567899999999
Q ss_pred ccCcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhcCCCcccchhhhHhhH
Q 001448 157 KFNEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGGPCLGVGELDNSATH 236 (1075)
Q Consensus 157 K~~~~~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~~~~~~~~dlE~l~sl 236 (1075)
+...+.+|+-+++++.+ +. .+.+...+.. ..|.+++|++..||.+|+-|+..+++..+..+... .+...
T Consensus 115 ~d~Np~IRaLALRtLs~----Ir---~~~i~e~l~~-~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~~---~~~~~ 183 (746)
T PTZ00429 115 TNSSPVVRALAVRTMMC----IR---VSSVLEYTLE-PLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQQ---DFKKD 183 (746)
T ss_pred CCCCHHHHHHHHHHHHc----CC---cHHHHHHHHH-HHHHHhcCCCHHHHHHHHHHHHHHHhhCccccccc---chHHH
Confidence 98889999999998877 33 2455666666 46777999999999999999999988642222211 12233
Q ss_pred HhhhccCCChhHHHHHHHHHHHHH
Q 001448 237 CVKAIEDPIASVRDAFAEALGSLL 260 (1075)
Q Consensus 237 ~~K~le~s~~~vR~a~A~~La~lL 260 (1075)
..+.++++|..|-..+..+|-++-
T Consensus 184 L~~LL~D~dp~Vv~nAl~aL~eI~ 207 (746)
T PTZ00429 184 LVELLNDNNPVVASNAAAIVCEVN 207 (746)
T ss_pred HHHHhcCCCccHHHHHHHHHHHHH
Confidence 444578999998888887777774
No 28
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=96.02 E-value=0.75 Score=55.62 Aligned_cols=323 Identities=16% Similarity=0.143 Sum_probs=174.6
Q ss_pred hHhHHHHHHHHHHhccCCchhhHHhHHHHHHhhhc--CCCCChhhHHHHHHHHHHHHHHHhhHhhcCHHHHHHHHHHHhc
Q 001448 80 PVRHLASVAMGRIISKGDNISVYSRVSSLQGFLSD--GKKSEPQKVAGAAQCLGELYRQFGRRITSGLLETTIIAAKLMK 157 (1075)
Q Consensus 80 P~R~l~a~cl~~ly~~GD~~~lf~~vn~l~~~l~~--~k~~s~~~~~aA~~cLG~l~~~~G~~l~s~~~e~~~~llK~lK 157 (1075)
=+||..||.++.+-+. + .|+.++.+|++ +-+.|-..|+-.+-|..++-+-+|+...+-....+.++-|.+|
T Consensus 296 YVRnvt~ra~~vva~a---l----gv~~llpfl~a~c~SrkSw~aRhTgiri~qqI~~llG~s~l~hl~~l~~ci~~~l~ 368 (975)
T COG5181 296 YVRNVTGRAVGVVADA---L----GVEELLPFLEALCGSRKSWEARHTGIRIAQQICELLGRSRLSHLGPLLKCISKLLK 368 (975)
T ss_pred HHHHHHHHHHHHHHHh---h----CcHHHHHHHHHHhcCccchhhhchhhHHHHHHHHHhCccHHhhhhhHHHHHHHHhh
Confidence 3588888888776543 2 46677777772 2233556777899999999999999999999999999999999
Q ss_pred cCcHHHHHHHHHHHHHHHhcCCCCCc---hhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhcCCCc--cc-----
Q 001448 158 FNEEFVRQEALLLLQNALEGSGGSAA---ASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGGPCL--GV----- 227 (1075)
Q Consensus 158 ~~~~~~R~~~l~~L~kil~g~g~~~~---~~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~~~~~--~~----- 227 (1075)
.-+..+|.-.-.+|..+.+..|.-.. +.+..-+|+-+.++ ++ +-+.++.+..+..+ ..
T Consensus 369 D~~~~vRi~tA~alS~lae~~~Pygie~fd~vl~pLw~g~~~h----rg--------k~l~sfLkA~g~iiplm~peYa~ 436 (975)
T COG5181 369 DRSRFVRIDTANALSYLAELVGPYGIEQFDEVLCPLWEGASQH----RG--------KELVSFLKAMGFIIPLMSPEYAC 436 (975)
T ss_pred ccceeeeehhHhHHHHHHHhcCCcchHHHHHHHHHHHHHHHhc----CC--------chHHHHHHHhccccccCChHhhh
Confidence 98888998888888888777775332 23455556532222 22 22333333221111 11
Q ss_pred chhhhHhhHHhhhccCCChhHHHHHHHHHHHHHHhccCCCCcCCCCCCCCCCCCCCh-hHHHHHHhhhhh-cccCCCCcc
Q 001448 228 GELDNSATHCVKAIEDPIASVRDAFAEALGSLLALGMNPQAQVQPKGKGPFPPAKKL-EGGLQRHLALPF-TRANGAKSK 305 (1075)
Q Consensus 228 ~dlE~l~sl~~K~le~s~~~vR~a~A~~La~lLa~~~~~~~~~~~~~k~~~~~~k~l-~~~l~~~Ls~~f-~k~~~~~~r 305 (1075)
.+--....+.++-|++++.+-..-+-.. ..+..+. ..-.++++ +|+.- .+-.+| .|-..+ -|
T Consensus 437 h~tre~m~iv~ref~spdeemkk~~l~v------~~~C~~v--------~~~tp~~lr~~v~p-efF~~fw~rr~A~-dr 500 (975)
T COG5181 437 HDTREHMEIVFREFKSPDEEMKKDLLVV------ERICDKV--------GTDTPWKLRDQVSP-EFFSPFWRRRSAG-DR 500 (975)
T ss_pred hhHHHHHHHHHHHhCCchhhcchhHHHH------HHHHhcc--------CCCCHHHHHHhhcH-HhhchHHHhhhcc-cc
Confidence 1111244566666666665443321110 0010110 00011233 33332 222333 221111 22
Q ss_pred hhHHHHHHHHHHHHHHhcccccCCCcchhHHHHHHHHHhccCC----CCCHHH-HHHHHHHHHHhhhccCChHHHHHHHH
Q 001448 306 NMRVNLTLSWVYFLQAIRLKYFHPDSELQDYALQVMDMLRADI----FVDSHA-LACVLYILRIGVTDQMTEPTQRSFLV 380 (1075)
Q Consensus 306 ~~R~Gv~~ayv~fl~~lg~~wle~~~~~~~~~~~i~~ll~~~~----~~~~~~-r~~v~~ILr~~v~~~L~E~~Q~~~~~ 380 (1075)
+.---|+.+-+.+-+..|.. .....|++-.+.++ .++++. -|.++-+=|.+ ++|.-...+..
T Consensus 501 ~~~k~v~~ttvilAk~~g~~---------~v~~kil~~~~De~ep~r~m~a~~vsri~~~lg~~~----~dErleerl~d 567 (975)
T COG5181 501 RSYKQVVLTTVILAKMGGDP---------RVSRKILEYYSDEPEPYRKMNAGLVSRIFSRLGRLG----FDERLEERLYD 567 (975)
T ss_pred cccceeehhHHHHHHHcCCh---------HHHHHHHhhccCCcchhhhhhhHHHHHHHHhccccc----ccHHHHHHHHH
Confidence 22223455555565666622 33444555544222 112221 23333332222 35655555566
Q ss_pred HHHhhcccCCCChhHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHhCCc
Q 001448 381 FLGKQLQAVDASPFMKIAALRTLSYTLKTLGEVPSEFKEVLDSTVVAAVSHSSQLVRIEAALTLRALAEVDPT 453 (1075)
Q Consensus 381 ~l~~~~~~~~~s~~~lv~aL~el~~Ll~~LGsa~~~~~~~l~d~L~~lL~hps~svRi~AA~cLr~~~~a~Ps 453 (1075)
.+++.++..+.+... .|--.+..+.+|+.-..+....+...++..|-||...||++||-..-.++...-.
T Consensus 568 ~il~Afqeq~~t~~~---il~~f~tv~vsl~~r~kp~l~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~ 637 (975)
T COG5181 568 SILNAFQEQDTTVGL---ILPCFSTVLVSLEFRGKPHLSMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKA 637 (975)
T ss_pred HHHHHHHhccccccE---EEecccceeeehhhccCcchHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHh
Confidence 665554322221110 0111122233445545566777889999999999999999999998888754433
No 29
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=95.97 E-value=4.1 Score=56.86 Aligned_cols=190 Identities=13% Similarity=0.066 Sum_probs=119.5
Q ss_pred HHHHHHHHHhhcCCChhHhHHHHHHHHHHhccCCchhhHHh---HHHHHHhhhcCCCCChhhHHHHHHHHHHHHHH---H
Q 001448 64 KCEDALYSLLILGARRPVRHLASVAMGRIISKGDNISVYSR---VSSLQGFLSDGKKSEPQKVAGAAQCLGELYRQ---F 137 (1075)
Q Consensus 64 ~l~~~L~~ll~~~~g~P~R~l~a~cl~~ly~~GD~~~lf~~---vn~l~~~l~~~k~~s~~~~~aA~~cLG~l~~~---~ 137 (1075)
.++..|.+++.+.-++|+...+..+|+.+|....-..++.. +-.+.++|.. . +...+-.|+.+|..+-.. .
T Consensus 362 ~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~-~--~~evQ~~Av~aL~~L~~~~~e~ 438 (2102)
T PLN03200 362 VIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITM-A--TADVQEELIRALSSLCCGKGGL 438 (2102)
T ss_pred ccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhhcc-C--CHHHHHHHHHHHHHHhCCCHHH
Confidence 45678888888887777788999999988877654433332 3356677762 1 233444577777665521 2
Q ss_pred hhHhhcCHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHH
Q 001448 138 GRRITSGLLETTIIAAKLMKFNEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAF 217 (1075)
Q Consensus 138 G~~l~s~~~e~~~~llK~lK~~~~~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l 217 (1075)
-+.+... ..+..+.+.|++.....|..+..+++.+..+.......-+.........+ .+...+..+|..|+.++..+
T Consensus 439 ~~aIi~~--ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~-LL~s~~~~iqeeAawAL~NL 515 (2102)
T PLN03200 439 WEALGGR--EGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQ-LLETGSQKAKEDSATVLWNL 515 (2102)
T ss_pred HHHHHHc--CcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHH-HHcCCCHHHHHHHHHHHHHH
Confidence 1222222 25788999999877888889999998876533211110111122222222 25556778999999999888
Q ss_pred HhhcCCCcccchh--hhHhhHHhhhccCCChhHHHHHHHHHHHHHH
Q 001448 218 AHIGGPCLGVGEL--DNSATHCVKAIEDPIASVRDAFAEALGSLLA 261 (1075)
Q Consensus 218 ~~~~~~~~~~~dl--E~l~sl~~K~le~s~~~vR~a~A~~La~lLa 261 (1075)
..+. +-. ..-+ .......++.+++.+..++..++..|..++.
T Consensus 516 a~~~-~qi-r~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~ 559 (2102)
T PLN03200 516 CCHS-EDI-RACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVR 559 (2102)
T ss_pred hCCc-HHH-HHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence 7632 111 0111 1244567788999999999999999999874
No 30
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=95.94 E-value=0.13 Score=55.62 Aligned_cols=172 Identities=20% Similarity=0.160 Sum_probs=97.0
Q ss_pred HHHHHHHHHHhccC----ChhhHHHHHHHHHHHHHHHhhcCCChhHhHHHHHHHHHHhcc-CCchhhH-H-hHHHHHHhh
Q 001448 40 FDLLSDLISAIDEE----PKESILLWQRKCEDALYSLLILGARRPVRHLASVAMGRIISK-GDNISVY-S-RVSSLQGFL 112 (1075)
Q Consensus 40 ~~wL~~L~~~l~~~----~k~di~~~Q~~l~~~L~~ll~~~~g~P~R~l~a~cl~~ly~~-GD~~~lf-~-~vn~l~~~l 112 (1075)
.+-|..|.+.+..- ..+++.+.-+.+...+.+.+. ....-+-+....|+..++.. |+.+.-| + .+..+.+.+
T Consensus 25 ~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~-d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~~Ll~~~ 103 (228)
T PF12348_consen 25 VEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLS-DLRSKVSKTACQLLSDLARQLGSHFEPYADILLPPLLKKL 103 (228)
T ss_dssp HHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S--HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHH
Confidence 34455555554433 233333333333344444333 34444567778888888875 5554333 1 222333333
Q ss_pred hcCCCCChhhHHHHHHHHHHHHHHHhhHhhcCHHHH-HHHHHHHhccCcHHHHHHHHHHHHHHHhcCCCCC---c-hhHH
Q 001448 113 SDGKKSEPQKVAGAAQCLGELYRQFGRRITSGLLET-TIIAAKLMKFNEEFVRQEALLLLQNALEGSGGSA---A-ASAY 187 (1075)
Q Consensus 113 ~~~k~~s~~~~~aA~~cLG~l~~~~G~~l~s~~~e~-~~~llK~lK~~~~~~R~~~l~~L~kil~g~g~~~---~-~~~~ 187 (1075)
. +.....+-+|..||-.+.+..+ ..+.+ ...+...+++..+.+|..++..+..++...|... . ....
T Consensus 104 ~---~~~~~i~~~a~~~L~~i~~~~~-----~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~ 175 (228)
T PF12348_consen 104 G---DSKKFIREAANNALDAIIESCS-----YSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFL 175 (228)
T ss_dssp G------HHHHHHHHHHHHHHHTTS------H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHH
T ss_pred c---cccHHHHHHHHHHHHHHHHHCC-----cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchH
Confidence 3 3334455689999998888554 12333 5556667777789999999999999999999222 1 1224
Q ss_pred HHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhc
Q 001448 188 SEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIG 221 (1075)
Q Consensus 188 ~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~ 221 (1075)
+++.+ ....+++|.+..||.+|-+|+..+.+..
T Consensus 176 ~~l~~-~l~~~l~D~~~~VR~~Ar~~~~~l~~~~ 208 (228)
T PF12348_consen 176 KQLVK-ALVKLLSDADPEVREAARECLWALYSHF 208 (228)
T ss_dssp HHHHH-HHHHHHTSS-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-HHHHHCCCCCHHHHHHHHHHHHHHHHHC
Confidence 66777 4666799999999999999999998863
No 31
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=95.84 E-value=0.57 Score=53.73 Aligned_cols=138 Identities=17% Similarity=0.104 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHHHHh--hHhhcCHHHHHHHHHHHhccC--cHHHHHHHHHHHHHHHhcCCCCCch-----hHHHHHHHHH
Q 001448 124 AGAAQCLGELYRQFG--RRITSGLLETTIIAAKLMKFN--EEFVRQEALLLLQNALEGSGGSAAA-----SAYSEAFRLI 194 (1075)
Q Consensus 124 ~aA~~cLG~l~~~~G--~~l~s~~~e~~~~llK~lK~~--~~~~R~~~l~~L~kil~g~g~~~~~-----~~~~di~K~~ 194 (1075)
..|+.++|-+.-++| ...-..+.+....+.+.++.. ....|..++.+|+-+.--.|...++ .....||...
T Consensus 104 ~lA~~~l~Ll~ltlg~g~~~~ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~ 183 (309)
T PF05004_consen 104 ALAARALALLALTLGAGEDSEEIFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLS 183 (309)
T ss_pred HHHHHHHHHHhhhcCCCccHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHH
Confidence 468888888888877 666677888888888888863 5678999999998766533322221 1234455421
Q ss_pred HHHhccCc---------chHHHHHHHHHHHHHHhhcCCC-cccchhhhHhhHHhhhccCCChhHHHHHHHHHHHHHHhcc
Q 001448 195 MRFAIVDK---------SFVVRIAGARCLKAFAHIGGPC-LGVGELDNSATHCVKAIEDPIASVRDAFAEALGSLLALGM 264 (1075)
Q Consensus 195 ~r~~~~Dk---------s~~Vr~aAa~cL~~l~~~~~~~-~~~~dlE~l~sl~~K~le~s~~~vR~a~A~~La~lLa~~~ 264 (1075)
. .-.|. +..|..||..+|..|+...++. +. ..++.........|+++|-+||.|++++||-+.=...
T Consensus 184 ~--~~~~~~~~~~~~~~~~~l~~aAL~aW~lLlt~~~~~~~~-~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~ 260 (309)
T PF05004_consen 184 I--LKSDGNAPVVAAEDDAALVAAALSAWALLLTTLPDSKLE-DLLEEALPALSELLDSDDVDVRIAAGEAIALLYELAR 260 (309)
T ss_pred h--cCcCCCcccccCCCccHHHHHHHHHHHHHHhcCCHHHHH-HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh
Confidence 1 11222 3579999999999998764221 22 3345666777788999999999999999997764444
No 32
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=95.83 E-value=0.078 Score=56.04 Aligned_cols=156 Identities=23% Similarity=0.231 Sum_probs=107.7
Q ss_pred HhHHHHHHHHHHhccCCchhhHHhHHHHHHhhhcC----------------CCCChhhHHHHHHHHHHHHHHHhhHhhcC
Q 001448 81 VRHLASVAMGRIISKGDNISVYSRVSSLQGFLSDG----------------KKSEPQKVAGAAQCLGELYRQFGRRITSG 144 (1075)
Q Consensus 81 ~R~l~a~cl~~ly~~GD~~~lf~~vn~l~~~l~~~----------------k~~s~~~~~aA~~cLG~l~~~~G~~l~s~ 144 (1075)
+|-..-.||..+....|.+.+|. .-..++=++ +|.+++.|.+|+..|..|.+.-...+ ..
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~---yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L-~~ 77 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFG---YWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFL-AQ 77 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHh---hHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHH-HH
Confidence 57888899999999999998887 333333322 35567788899999998888532222 11
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhcCCC
Q 001448 145 LLETTIIAAKLMKFNEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGGPC 224 (1075)
Q Consensus 145 ~~e~~~~llK~lK~~~~~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~~~~ 224 (1075)
.+| ...+...|..|...+. .+.+++++........+++.++-....||+..|+..+ ||
T Consensus 78 Ae~-------------~~~~~~sFtslS~tLa--------~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~t-PY 135 (182)
T PF13251_consen 78 AEE-------------SKGPSGSFTSLSSTLA--------SMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQAT-PY 135 (182)
T ss_pred HHh-------------cCCCCCCcccHHHHHH--------HHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccC-Ch
Confidence 111 1123334445544332 3455555543444445688999999999999999986 88
Q ss_pred c--ccchhhhHhhHHhhhccCCChhHHHHHHHHHHHHHHh
Q 001448 225 L--GVGELDNSATHCVKAIEDPIASVRDAFAEALGSLLAL 262 (1075)
Q Consensus 225 ~--~~~dlE~l~sl~~K~le~s~~~vR~a~A~~La~lLa~ 262 (1075)
= ..+=+..+.+-+.+.+...|.+||.+..-|+|.+++.
T Consensus 136 ~rL~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s~ 175 (182)
T PF13251_consen 136 HRLPPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLSV 175 (182)
T ss_pred hhcCHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Confidence 4 4555566888888888999999999999999999843
No 33
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=95.55 E-value=7.5 Score=46.44 Aligned_cols=205 Identities=18% Similarity=0.154 Sum_probs=120.6
Q ss_pred HhhHHhhhccCCChhHHHHHHHHHHHHHHhccCCCCcCCCCCCCCCCCCCChhHHHHHHhhhhhcccCCCCcchhHHHHH
Q 001448 233 SATHCVKAIEDPIASVRDAFAEALGSLLALGMNPQAQVQPKGKGPFPPAKKLEGGLQRHLALPFTRANGAKSKNMRVNLT 312 (1075)
Q Consensus 233 l~sl~~K~le~s~~~vR~a~A~~La~lLa~~~~~~~~~~~~~k~~~~~~k~l~~~l~~~Ls~~f~k~~~~~~r~~R~Gv~ 312 (1075)
+..+.--+....+..+|.+++++++.++-+ +..+ ..+++.+...+... .+....+.|....
T Consensus 191 l~~l~~~~~~~~~~~~~~~~~~~la~LvNK-~~~~--------------~~l~~~l~~~~~~~----~~~~~~~~~~~~~ 251 (415)
T PF12460_consen 191 LQSLLNLALSSEDEFSRLAALQLLASLVNK-WPDD--------------DDLDEFLDSLLQSI----SSSEDSELRPQAL 251 (415)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHcC-CCCh--------------hhHHHHHHHHHhhh----cccCCcchhHHHH
Confidence 334444445556689999999999998855 2111 03555555332222 1112566677777
Q ss_pred HHHHHHHHHhcccccCCCcchhHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhhhccCChH---------HH---HHHHH
Q 001448 313 LSWVYFLQAIRLKYFHPDSELQDYALQVMDMLRADIFVDSHALACVLYILRIGVTDQMTEP---------TQ---RSFLV 380 (1075)
Q Consensus 313 ~ayv~fl~~lg~~wle~~~~~~~~~~~i~~ll~~~~~~~~~~r~~v~~ILr~~v~~~L~E~---------~Q---~~~~~ 380 (1075)
+.|+-....+=.. ++.....|+..++++++. ..+...+=+.+..++.+ .-..+... -| .+++.
T Consensus 252 ~~~~Wi~KaLv~R---~~~~~~~~~~~L~~lL~~-~~~g~~aA~~f~il~~d-~~~~l~~~~~a~vklLykQR~F~~~~p 326 (415)
T PF12460_consen 252 EILIWITKALVMR---GHPLATELLDKLLELLSS-PELGQQAAKAFGILLSD-SDDVLNKENHANVKLLYKQRFFTQVLP 326 (415)
T ss_pred HHHHHHHHHHHHc---CCchHHHHHHHHHHHhCC-hhhHHHHHHHHhhHhcC-cHHhcCccccchhhhHHhHHHHHHHHH
Confidence 7777666663211 122335788888888874 22222333566666655 11122211 12 12333
Q ss_pred HHHhhcccCCCChhHHHHHHHHHHHHHHHhCCCchhh----HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHhCCcchh
Q 001448 381 FLGKQLQAVDASPFMKIAALRTLSYTLKTLGEVPSEF----KEVLDSTVVAAVSHSSQLVRIEAALTLRALAEVDPTCVS 456 (1075)
Q Consensus 381 ~l~~~~~~~~~s~~~lv~aL~el~~Ll~~LGsa~~~~----~~~l~d~L~~lL~hps~svRi~AA~cLr~~~~a~Ps~l~ 456 (1075)
.+++..+..+. ..--.-|.++++++. .+|.++ ...+.--|++.|..|+..+|.++-.+|..+..-.|..+.
T Consensus 327 ~L~~~~~~~~~--~~k~~yL~ALs~ll~---~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~ 401 (415)
T PF12460_consen 327 KLLEGFKEADD--EIKSNYLTALSHLLK---NVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELIS 401 (415)
T ss_pred HHHHHHhhcCh--hhHHHHHHHHHHHHh---hCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHH
Confidence 33333322221 122334666777776 445543 355777889999999999999999999999999988877
Q ss_pred hHHHHHHHHH
Q 001448 457 GLITYGVTTL 466 (1075)
Q Consensus 457 ~ll~~~~~~L 466 (1075)
+=++..+.+|
T Consensus 402 ~hl~sLI~~L 411 (415)
T PF12460_consen 402 EHLSSLIPRL 411 (415)
T ss_pred HHHHHHHHHH
Confidence 7776666655
No 34
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=95.45 E-value=2.4 Score=55.06 Aligned_cols=276 Identities=16% Similarity=0.133 Sum_probs=157.0
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhcCCCc
Q 001448 146 LETTIIAAKLMKFNEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGGPCL 225 (1075)
Q Consensus 146 ~e~~~~llK~lK~~~~~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~~~~~ 225 (1075)
-..+...+|.+|. .+.+.+++.+|+..-.-+- ||...-.|.- -+=+...|....||+.|.+.|.++...- .-+
T Consensus 424 vs~lts~IR~lk~--~~tK~~ALeLl~~lS~~i~---de~~LDRVlP-Y~v~l~~Ds~a~Vra~Al~Tlt~~L~~V-r~~ 496 (1431)
T KOG1240|consen 424 VSVLTSCIRALKT--IQTKLAALELLQELSTYID---DEVKLDRVLP-YFVHLLMDSEADVRATALETLTELLALV-RDI 496 (1431)
T ss_pred HHHHHHHHHhhhc--chhHHHHHHHHHHHhhhcc---hHHHHhhhHH-HHHHHhcCchHHHHHHHHHHHHHHHhhc-cCC
Confidence 3456666677776 4567788888887544332 4555555555 3455688999999999988887766532 112
Q ss_pred ccchh----hhHhhHHhhhccC-CChhHHHHHHHHHHHHHHhccCCC--------Cc--CCCCC-CCCCCC----CCChh
Q 001448 226 GVGEL----DNSATHCVKAIED-PIASVRDAFAEALGSLLALGMNPQ--------AQ--VQPKG-KGPFPP----AKKLE 285 (1075)
Q Consensus 226 ~~~dl----E~l~sl~~K~le~-s~~~vR~a~A~~La~lLa~~~~~~--------~~--~~~~~-k~~~~~----~k~l~ 285 (1075)
..+|- |-+..-.-..+++ ++..||.++|.+||.+.-.++..- ++ ..|.. ..+... ...+-
T Consensus 497 ~~~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~ 576 (1431)
T KOG1240|consen 497 PPSDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALH 576 (1431)
T ss_pred CcccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHH
Confidence 22221 2233333344455 788899999999999886665310 00 01111 011000 00111
Q ss_pred HHHHHHhhhhhcccCCCCcchhHHHHHHHHHHHHHHhcccccCCCcchhHHHHHHHHHhccCCCCCHHHH-HHHHHHHHH
Q 001448 286 GGLQRHLALPFTRANGAKSKNMRVNLTLSWVYFLQAIRLKYFHPDSELQDYALQVMDMLRADIFVDSHAL-ACVLYILRI 364 (1075)
Q Consensus 286 ~~l~~~Ls~~f~k~~~~~~r~~R~Gv~~ayv~fl~~lg~~wle~~~~~~~~~~~i~~ll~~~~~~~~~~r-~~v~~ILr~ 364 (1075)
+.+. ....-++-.+ ..-||-.+.++..-+---.| +++.-.-++.|++..|. +. |.+-| +++.-| .
T Consensus 577 ~~V~-~~v~sLlsd~---~~~Vkr~Lle~i~~LC~FFG-----k~ksND~iLshLiTfLN-Dk--Dw~LR~aFfdsI--~ 642 (1431)
T KOG1240|consen 577 HTVE-QMVSSLLSDS---PPIVKRALLESIIPLCVFFG-----KEKSNDVILSHLITFLN-DK--DWRLRGAFFDSI--V 642 (1431)
T ss_pred HHHH-HHHHHHHcCC---chHHHHHHHHHHHHHHHHhh-----hcccccchHHHHHHHhc-Cc--cHHHHHHHHhhc--c
Confidence 1111 1222233333 35677777666433222223 12222457778877775 33 45433 444444 2
Q ss_pred hhhccCChHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 001448 365 GVTDQMTEPTQRSFLVFLGKQLQAVDASPFMKIAALRTLSYTLKTLGEVPSEFKEVLDSTVVAAVSHSSQLVRIEAALTL 444 (1075)
Q Consensus 365 ~v~~~L~E~~Q~~~~~~l~~~~~~~~~s~~~lv~aL~el~~Ll~~LGsa~~~~~~~l~d~L~~lL~hps~svRi~AA~cL 444 (1075)
+|.-.+|-.+=.|.+.=|+.+ .=+|..+++++-||+.++.|++ +|---....-.+.+.+..+|.||+.-||-++---+
T Consensus 643 gvsi~VG~rs~seyllPLl~Q-~ltD~EE~Viv~aL~~ls~Lik-~~ll~K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI 720 (1431)
T KOG1240|consen 643 GVSIFVGWRSVSEYLLPLLQQ-GLTDGEEAVIVSALGSLSILIK-LGLLRKPAVKDILQDVLPLLCHPNLWIRRAVLGII 720 (1431)
T ss_pred ceEEEEeeeeHHHHHHHHHHH-hccCcchhhHHHHHHHHHHHHH-hcccchHHHHHHHHhhhhheeCchHHHHHHHHHHH
Confidence 223344544334444444332 1167778999999999999986 45555555667888899999999999998775433
No 35
>PTZ00429 beta-adaptin; Provisional
Probab=95.18 E-value=14 Score=47.42 Aligned_cols=322 Identities=10% Similarity=0.037 Sum_probs=170.1
Q ss_pred hhHhHHHHHHHHHHhccCCchhhHHhHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHhhHhhcCHHHHHHHHHHHhcc
Q 001448 79 RPVRHLASVAMGRIISKGDNISVYSRVSSLQGFLSDGKKSEPQKVAGAAQCLGELYRQFGRRITSGLLETTIIAAKLMKF 158 (1075)
Q Consensus 79 ~P~R~l~a~cl~~ly~~GD~~~lf~~vn~l~~~l~~~k~~s~~~~~aA~~cLG~l~~~~G~~l~s~~~e~~~~llK~lK~ 158 (1075)
...||++---+.. |.+.+.-...-.||+++.=+ ++..|..|..|+-.|+.+ ..-...+.+...+-|.++.
T Consensus 82 ~elKKLvYLYL~~-ya~~~pelalLaINtl~KDl---~d~Np~IRaLALRtLs~I------r~~~i~e~l~~~lkk~L~D 151 (746)
T PTZ00429 82 LELKKLVYLYVLS-TARLQPEKALLAVNTFLQDT---TNSSPVVRALAVRTMMCI------RVSSVLEYTLEPLRRAVAD 151 (746)
T ss_pred HHHHHHHHHHHHH-HcccChHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHcC------CcHHHHHHHHHHHHHHhcC
Confidence 3446665554444 55666666677777776644 366788998898888854 2233455566666777777
Q ss_pred CcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhcCCCc-------------
Q 001448 159 NEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGGPCL------------- 225 (1075)
Q Consensus 159 ~~~~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~~~~~------------- 225 (1075)
.++-+|..+..++.|+.+.......+ .++... .+..+.|++..|...|...|.++..+.+..+
T Consensus 152 ~~pYVRKtAalai~Kly~~~pelv~~---~~~~~~-L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~l~~~~~~~Ll~~ 227 (746)
T PTZ00429 152 PDPYVRKTAAMGLGKLFHDDMQLFYQ---QDFKKD-LVELLNDNNPVVASNAAAIVCEVNDYGSEKIESSNEWVNRLVYH 227 (746)
T ss_pred CCHHHHHHHHHHHHHHHhhCcccccc---cchHHH-HHHHhcCCCccHHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHH
Confidence 89999999999999999865543211 122222 3335889999999999887777754321000
Q ss_pred ----------------------ccchhhhHhhHHhhhccCCChhHHHHHHHHHHHHHHhccCCCCcCCCCCCCCCCCCCC
Q 001448 226 ----------------------GVGELDNSATHCVKAIEDPIASVRDAFAEALGSLLALGMNPQAQVQPKGKGPFPPAKK 283 (1075)
Q Consensus 226 ----------------------~~~dlE~l~sl~~K~le~s~~~vR~a~A~~La~lLa~~~~~~~~~~~~~k~~~~~~k~ 283 (1075)
...|.+.+...+...+.+.|..|--++++++-.+.-. . + ...
T Consensus 228 L~e~~EW~Qi~IL~lL~~y~P~~~~e~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~-~-~--------------~~~ 291 (746)
T PTZ00429 228 LPECNEWGQLYILELLAAQRPSDKESAETLLTRVLPRMSHQNPAVVMGAIKVVANLASR-C-S--------------QEL 291 (746)
T ss_pred hhcCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCc-C-C--------------HHH
Confidence 0112222333333333444444444444444433200 0 0 001
Q ss_pred hhHHHHHHhhhhhcccCCCCcchhHHHHHHHHHHHHHHhcccccCCCcchhHHHHHHHHHhccCCCCCHHHHHHHHHHHH
Q 001448 284 LEGGLQRHLALPFTRANGAKSKNMRVNLTLSWVYFLQAIRLKYFHPDSELQDYALQVMDMLRADIFVDSHALACVLYILR 363 (1075)
Q Consensus 284 l~~~l~~~Ls~~f~k~~~~~~r~~R~Gv~~ayv~fl~~lg~~wle~~~~~~~~~~~i~~ll~~~~~~~~~~r~~v~~ILr 363 (1075)
.++++. -++.+++.-. ++..++|.-+-.....+++.- +..+ ..+..++..... ++ +...++=+..+
T Consensus 292 ~~~~~~-rl~~pLv~L~-ss~~eiqyvaLr~I~~i~~~~-P~lf------~~~~~~Ff~~~~-Dp--~yIK~~KLeIL-- 357 (746)
T PTZ00429 292 IERCTV-RVNTALLTLS-RRDAETQYIVCKNIHALLVIF-PNLL------RTNLDSFYVRYS-DP--PFVKLEKLRLL-- 357 (746)
T ss_pred HHHHHH-HHHHHHHHhh-CCCccHHHHHHHHHHHHHHHC-HHHH------HHHHHhhhcccC-Cc--HHHHHHHHHHH--
Confidence 122222 2333221111 114566654444333333221 1111 111111111111 11 11111222222
Q ss_pred HhhhccCChHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHhcCCChHHHHHHHHH
Q 001448 364 IGVTDQMTEPTQRSFLVFLGKQLQAVDASPFMKIAALRTLSYTLKTLGEVPSEFKEVLDSTVVAAVSHSSQLVRIEAALT 443 (1075)
Q Consensus 364 ~~v~~~L~E~~Q~~~~~~l~~~~~~~~~s~~~lv~aL~el~~Ll~~LGsa~~~~~~~l~d~L~~lL~hps~svRi~AA~c 443 (1075)
..+..|..=.++++.|.+... +.+.....-+.++++.+-..+ +...+.|.+.|+.++.+....+ .++...
T Consensus 358 ---~~Lane~Nv~~IL~EL~eYa~--d~D~ef~r~aIrAIg~lA~k~----~~~a~~cV~~Ll~ll~~~~~~v-~e~i~v 427 (746)
T PTZ00429 358 ---LKLVTPSVAPEILKELAEYAS--GVDMVFVVEVVRAIASLAIKV----DSVAPDCANLLLQIVDRRPELL-PQVVTA 427 (746)
T ss_pred ---HHHcCcccHHHHHHHHHHHhh--cCCHHHHHHHHHHHHHHHHhC----hHHHHHHHHHHHHHhcCCchhH-HHHHHH
Confidence 223355544555555555432 344456666777887776554 4567888999999998765544 478888
Q ss_pred HHHHHHhCCcc
Q 001448 444 LRALAEVDPTC 454 (1075)
Q Consensus 444 Lr~~~~a~Ps~ 454 (1075)
+|-+....|..
T Consensus 428 ik~IlrkyP~~ 438 (746)
T PTZ00429 428 AKDIVRKYPEL 438 (746)
T ss_pred HHHHHHHCccH
Confidence 89888888864
No 36
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=95.12 E-value=12 Score=46.10 Aligned_cols=373 Identities=16% Similarity=0.110 Sum_probs=209.8
Q ss_pred cCCChhHhHHHHHHHHHHhccCCchhhHHhHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHhhHhhcCHHHHHHHHHH
Q 001448 75 LGARRPVRHLASVAMGRIISKGDNISVYSRVSSLQGFLSDGKKSEPQKVAGAAQCLGELYRQFGRRITSGLLETTIIAAK 154 (1075)
Q Consensus 75 ~~~g~P~R~l~a~cl~~ly~~GD~~~lf~~vn~l~~~l~~~k~~s~~~~~aA~~cLG~l~~~~G~~l~s~~~e~~~~llK 154 (1075)
..|.+-+|+.++.|+-.+-..-+...-=+..-.++..++ +. +-..+..|..-+.-+....|-+--.-.. .+..+.|
T Consensus 106 ~tps~~~q~~~~~~l~~~~~~~~~~~~~~~l~~l~~ll~--~~-~~~~~~~aa~~~ag~v~g~~i~~~~~~~-~l~~l~~ 181 (569)
T KOG1242|consen 106 DTPSKSVQRAVSTCLPPLVVLSKGLSGEYVLELLLELLT--ST-KIAERAGAAYGLAGLVNGLGIESLKEFG-FLDNLSK 181 (569)
T ss_pred CCCcHHHHHHHHHHhhhHHHHhhccCHHHHHHHHHHHhc--cc-cHHHHhhhhHHHHHHHcCcHHhhhhhhh-HHHHHHH
Confidence 446677799999999887665444433333345555554 12 2223334555555555544444333332 5666777
Q ss_pred HhccCcHHHHH-HHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhcCCCcccchhhhH
Q 001448 155 LMKFNEEFVRQ-EALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGGPCLGVGELDNS 233 (1075)
Q Consensus 155 ~lK~~~~~~R~-~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~~~~~~~~dlE~l 233 (1075)
.++.-.+..|. ..+.++++....+|.. -+.....++-.++. +.+|+.-.||-||.++..++.+...+| ....+
T Consensus 182 ai~dk~~~~~re~~~~a~~~~~~~Lg~~-~EPyiv~~lp~il~-~~~d~~~~Vr~Aa~~a~kai~~~~~~~----aVK~l 255 (569)
T KOG1242|consen 182 AIIDKKSALNREAALLAFEAAQGNLGPP-FEPYIVPILPSILT-NFGDKINKVREAAVEAAKAIMRCLSAY----AVKLL 255 (569)
T ss_pred HhcccchhhcHHHHHHHHHHHHHhcCCC-CCchHHhhHHHHHH-HhhccchhhhHHHHHHHHHHHHhcCcc----hhhHh
Confidence 77765455555 5999999999999954 45678888775444 478999999999999999999975332 11123
Q ss_pred hhHHhhhccCCChhHHHHHHHHHHHHHHhccCCCCcCCCCCCCCCCCCCChhHHHHH---HhhhhhcccCCCCcchhHHH
Q 001448 234 ATHCVKAIEDPIASVRDAFAEALGSLLALGMNPQAQVQPKGKGPFPPAKKLEGGLQR---HLALPFTRANGAKSKNMRVN 310 (1075)
Q Consensus 234 ~sl~~K~le~s~~~vR~a~A~~La~lLa~~~~~~~~~~~~~k~~~~~~k~l~~~l~~---~Ls~~f~k~~~~~~r~~R~G 310 (1075)
..-.+..++.+.-.+-.++.+.+|.+... .|. .++..|-. -++.-... + ..++|-.
T Consensus 256 lpsll~~l~~~kWrtK~aslellg~m~~~--ap~---------------qLs~~lp~iiP~lsevl~D--T--~~evr~a 314 (569)
T KOG1242|consen 256 LPSLLGSLLEAKWRTKMASLELLGAMADC--APK---------------QLSLCLPDLIPVLSEVLWD--T--KPEVRKA 314 (569)
T ss_pred hhhhHHHHHHHhhhhHHHHHHHHHHHHHh--chH---------------HHHHHHhHhhHHHHHHHcc--C--CHHHHHH
Confidence 33333344444556778888888854422 121 12211110 11111111 1 4666665
Q ss_pred HHHHHHHHHHHhcccccCCCcchhHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhhhccCChHHHHHHHHHHHhhcccCC
Q 001448 311 LTLSWVYFLQAIRLKYFHPDSELQDYALQVMDMLRADIFVDSHALACVLYILRIGVTDQMTEPTQRSFLVFLGKQLQAVD 390 (1075)
Q Consensus 311 v~~ayv~fl~~lg~~wle~~~~~~~~~~~i~~ll~~~~~~~~~~r~~v~~ILr~~v~~~L~E~~Q~~~~~~l~~~~~~~~ 390 (1075)
=..|...|-.... |.+.+.|...+++-++.+. .....|+.-+.+.++-.-..+++---+.-.+-+.+..++
T Consensus 315 ~~~~l~~~~svid------N~dI~~~ip~Lld~l~dp~---~~~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRs 385 (569)
T KOG1242|consen 315 GIETLLKFGSVID------NPDIQKIIPTLLDALADPS---CYTPECLDSLGATTFVAEVDAPSLALMVPILKRGLAERS 385 (569)
T ss_pred HHHHHHHHHHhhc------cHHHHHHHHHHHHHhcCcc---cchHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhcc
Confidence 5566666644443 4444455555555554221 123567777777666666666554444444444343333
Q ss_pred C-ChhHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHhCCc-chhhHHHHHHHHHHh
Q 001448 391 A-SPFMKIAALRTLSYTLKTLGEVPSEFKEVLDSTVVAAVSHSSQLVRIEAALTLRALAEVDPT-CVSGLITYGVTTLNA 468 (1075)
Q Consensus 391 ~-s~~~lv~aL~el~~Ll~~LGsa~~~~~~~l~d~L~~lL~hps~svRi~AA~cLr~~~~a~Ps-~l~~ll~~~~~~L~~ 468 (1075)
. .+-.++..-.-+..|+..=-. ..++...+...+-..+.-|-..||--|+.+|-......-. +...++....+.+..
T Consensus 386 t~~kr~t~~IidNm~~LveDp~~-lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~~f~d~~p~l~e~~~~ 464 (569)
T KOG1242|consen 386 TSIKRKTAIIIDNMCKLVEDPKD-LAPFLPSLLPGLKENLDDAVPEVRAVAARALGALLERLGEVSFDDLIPELSETLTS 464 (569)
T ss_pred chhhhhHHHHHHHHHHhhcCHHH-HhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHhhcccccccHHHHhhcc
Confidence 2 333455555556665522111 1245567788888888889999999999998544433222 113444444444444
Q ss_pred hhhhcccccCCcccchhhhhchHHHHHHHHHhh
Q 001448 469 LRENVSFEKGSSLMVELDSLHGQATVVAALIFI 501 (1075)
Q Consensus 469 ~~~~l~~~~~~~~~~~~~~~~G~a~aLAALl~~ 501 (1075)
.++. .++ .|-+-+++-.++.
T Consensus 465 ~k~~------------~~~-~g~aq~l~evl~~ 484 (569)
T KOG1242|consen 465 EKSL------------VDR-SGAAQDLSEVLAG 484 (569)
T ss_pred chhh------------hhh-HHHhhhHHHHHhc
Confidence 3321 222 5666666665553
No 37
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.91 E-value=21 Score=48.05 Aligned_cols=345 Identities=16% Similarity=0.094 Sum_probs=190.2
Q ss_pred HHHHhccCChhhHHHHHHHHHHHHHHHhhc---C---CChhHhHHHHHHHHHHhccCCchhhHHhHHHHHHhhhcCC-CC
Q 001448 46 LISAIDEEPKESILLWQRKCEDALYSLLIL---G---ARRPVRHLASVAMGRIISKGDNISVYSRVSSLQGFLSDGK-KS 118 (1075)
Q Consensus 46 L~~~l~~~~k~di~~~Q~~l~~~L~~ll~~---~---~g~P~R~l~a~cl~~ly~~GD~~~lf~~vn~l~~~l~~~k-~~ 118 (1075)
|-+.|..-+-+++++.-+++=+++|+..-. + .|-=.-+.+++-.+++-++-+...=-+++..+..++= ++ -+
T Consensus 1063 L~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl-~~gim 1141 (1702)
T KOG0915|consen 1063 LADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLL-DEGIM 1141 (1702)
T ss_pred HHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHh-ccCcc
Confidence 344556677778888888888888877641 1 1112223355555666666555555566666666654 22 22
Q ss_pred C--hhhHHHHHHHHHHHHHHHhhHhhcCHHHHHHHHHHHhccCcHH-------------------HHHHH------HHHH
Q 001448 119 E--PQKVAGAAQCLGELYRQFGRRITSGLLETTIIAAKLMKFNEEF-------------------VRQEA------LLLL 171 (1075)
Q Consensus 119 s--~~~~~aA~~cLG~l~~~~G~~l~s~~~e~~~~llK~lK~~~~~-------------------~R~~~------l~~L 171 (1075)
| +..|-.++..+-++-+..|.++-..+++..-.++..+-..|.+ .|.++ |.++
T Consensus 1142 s~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R~s~aksspmmeTi 1221 (1702)
T KOG0915|consen 1142 SKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELEPQVLNYLSLRLINIETEALDTLRASAAKSSPMMETI 1221 (1702)
T ss_pred cchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccchHHHHHHHHhhhhhHHHHHHHHHHhhhcCCcHHHHH
Confidence 2 4455679999999999999999999999999988887754332 33332 4455
Q ss_pred HHHHhcCCCCCchhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhcCCCcccchhhhHhhHHhhhccCCChhHHHH
Q 001448 172 QNALEGSGGSAAASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGGPCLGVGELDNSATHCVKAIEDPIASVRDA 251 (1075)
Q Consensus 172 ~kil~g~g~~~~~~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~~~~~~~~dlE~l~sl~~K~le~s~~~vR~a 251 (1075)
++.+.-+-.+.-+...-.+-+. +|+.. ..+-|.+++.....|+...+.=+ +.=-..+...||-.+++-|..+|++
T Consensus 1222 ~~ci~~iD~~vLeelip~l~el-~R~sV---gl~Tkvg~A~fI~~L~~r~~~em-tP~sgKll~al~~g~~dRNesv~ka 1296 (1702)
T KOG0915|consen 1222 NKCINYIDISVLEELIPRLTEL-VRGSV---GLGTKVGCASFISLLVQRLGSEM-TPYSGKLLRALFPGAKDRNESVRKA 1296 (1702)
T ss_pred HHHHHhhhHHHHHHHHHHHHHH-HhccC---CCCcchhHHHHHHHHHHHhcccc-CcchhHHHHHHhhccccccHHHHHH
Confidence 5555443322223333344442 44422 23445555555555555421111 1111389999999999999999999
Q ss_pred HHHHHHHHHHhccCCCCcCCCCCCCCCCCCCChhHHHHHHhhhhhcccCCCCcchhHHHHHHHHHHHHHHhcccccCCCc
Q 001448 252 FAEALGSLLALGMNPQAQVQPKGKGPFPPAKKLEGGLQRHLALPFTRANGAKSKNMRVNLTLSWVYFLQAIRLKYFHPDS 331 (1075)
Q Consensus 252 ~A~~La~lLa~~~~~~~~~~~~~k~~~~~~k~l~~~l~~~Ls~~f~k~~~~~~r~~R~Gv~~ayv~fl~~lg~~wle~~~ 331 (1075)
+|.+.|.++ ++-.|. +.+--+.+++.-.|-+-.+ .+.++.++.-
T Consensus 1297 fAsAmG~L~-k~Ss~d---------------q~qKLie~~l~~~l~k~es--~~siscatis------------------ 1340 (1702)
T KOG0915|consen 1297 FASAMGYLA-KFSSPD---------------QMQKLIETLLADLLGKDES--LKSISCATIS------------------ 1340 (1702)
T ss_pred HHHHHHHHH-hcCChH---------------HHHHHHHHHHHHHhccCCC--ccchhHHHHH------------------
Confidence 999999988 333332 1111122233334444443 4555555442
Q ss_pred chhHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhhhccCChHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHHHhC
Q 001448 332 ELQDYALQVMDMLRADIFVDSHALACVLYILRIGVTDQMTEPTQRSFLVFLGKQLQAVDASPFMKIAALRTLSYTLKTLG 411 (1075)
Q Consensus 332 ~~~~~~~~i~~ll~~~~~~~~~~r~~v~~ILr~~v~~~L~E~~Q~~~~~~l~~~~~~~~~s~~~lv~aL~el~~Ll~~LG 411 (1075)
++..+..+++.++. ...+=+|+=.--.+ |++-.++.+.++...-+.+. |
T Consensus 1341 ---~Ian~s~e~Lkn~a------saILPLiFLa~~ee---~Ka~q~Lw~dvW~e~vsgga-------------------g 1389 (1702)
T KOG0915|consen 1341 ---NIANYSQEMLKNYA------SAILPLIFLAMHEE---EKANQELWNDVWAELVSGGA-------------------G 1389 (1702)
T ss_pred ---HHHHhhHHHHHhhH------HHHHHHHHHHHhHH---HHHHHHHHHHHHHHhCCCCc-------------------c
Confidence 12223333333111 11111111000000 56666666666664432222 1
Q ss_pred CCchhhHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHhCCc-chhhHHHHHH
Q 001448 412 EVPSEFKEVLDSTVVAAVSHSSQLVRIEAALTLRALAEVDPT-CVSGLITYGV 463 (1075)
Q Consensus 412 sa~~~~~~~l~d~L~~lL~hps~svRi~AA~cLr~~~~a~Ps-~l~~ll~~~~ 463 (1075)
...--..+.+.-.....+.+.+..+|-.+|..+|..+...-+ +..|.+....
T Consensus 1390 tvrl~~~eiLn~iceni~nn~~w~lr~q~Akai~~~a~~~sss~~~p~ilkl~ 1442 (1702)
T KOG0915|consen 1390 TVRLYLLEILNLICENITNNESWKLRKQAAKAIRVIAEGLSSSAPIPVILKLA 1442 (1702)
T ss_pred hhhhhHHHHHHHHHHHhccchHHHHHHHHHHHHHHHcccccccCChHHHHHHH
Confidence 111012233444444556677799999999999999966554 3325554433
No 38
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=94.62 E-value=0.15 Score=46.18 Aligned_cols=86 Identities=31% Similarity=0.396 Sum_probs=68.8
Q ss_pred HHHHHHhhcCCChhHhHHHHHHHHHHhccCCchhhHHhHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHhhHhhcCHH
Q 001448 67 DALYSLLILGARRPVRHLASVAMGRIISKGDNISVYSRVSSLQGFLSDGKKSEPQKVAGAAQCLGELYRQFGRRITSGLL 146 (1075)
Q Consensus 67 ~~L~~ll~~~~g~P~R~l~a~cl~~ly~~GD~~~lf~~vn~l~~~l~~~k~~s~~~~~aA~~cLG~l~~~~G~~l~s~~~ 146 (1075)
+.|.+.+...+-+-+|..+.+||+.+ |+. +.+..+...++ +++|..+.+|+..||.+ | -+
T Consensus 2 ~~L~~~l~~~~~~~vr~~a~~~L~~~---~~~----~~~~~L~~~l~---d~~~~vr~~a~~aL~~i----~------~~ 61 (88)
T PF13646_consen 2 PALLQLLQNDPDPQVRAEAARALGEL---GDP----EAIPALIELLK---DEDPMVRRAAARALGRI----G------DP 61 (88)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHCC---THH----HHHHHHHHHHT---SSSHHHHHHHHHHHHCC----H------HH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHc---CCH----hHHHHHHHHHc---CCCHHHHHHHHHHHHHh----C------CH
Confidence 56778887899999999999999944 333 67888888885 67888888999999955 2 47
Q ss_pred HHHHHHHHHhccC-cHHHHHHHHHHHH
Q 001448 147 ETTIIAAKLMKFN-EEFVRQEALLLLQ 172 (1075)
Q Consensus 147 e~~~~llK~lK~~-~~~~R~~~l~~L~ 172 (1075)
+.+..+.+.+++. +..+|.+++.+|+
T Consensus 62 ~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 62 EAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 7888999999874 5667999998874
No 39
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=94.45 E-value=23 Score=46.27 Aligned_cols=433 Identities=18% Similarity=0.165 Sum_probs=236.0
Q ss_pred CCCcccchhHHHHHHHHhhhccCCCCc-------hhHHHHHHHHHH---HhccCCh--hhHHHHHHHHHHHHHHHhh--c
Q 001448 10 VPLSRFGVLVAQLESIVASASQQSPDP-------LLCFDLLSDLIS---AIDEEPK--ESILLWQRKCEDALYSLLI--L 75 (1075)
Q Consensus 10 ~~~~~~~~~~a~le~~~~~~~~~~~~~-------~~~~~wL~~L~~---~l~~~~k--~di~~~Q~~l~~~L~~ll~--~ 75 (1075)
.++.-||.=|.-||-+.--=-+|.|.. -.++-||+-+-. .+.+.|+ .+=+. .....+.+... .
T Consensus 109 ~v~k~fPh~V~~Le~il~lL~~~npss~~~~~~ryilLlWLsvlllnPF~l~rlD~s~~~~kt---~~i~rI~~~~~~Yl 185 (1133)
T KOG1943|consen 109 AVLKLFPHQVSDLEPILDLLERQNPSSFSDWETRYILLLWLSVLLLNPFDLSRLDESLTFDKT---NVILRILSFFENYL 185 (1133)
T ss_pred hhHHhCCcHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHcCCCcccccCcccccCCc---hHHHHHHHHHHHHH
Confidence 346668888999988776554555443 345678876554 2333333 00011 33344444432 1
Q ss_pred CCChhHhHHHHHHHHHHhccCCchhhHHhHHHHHHhhhcCC-CCChh--hHHHHHHHHHHHHHHHhhHhhcCHHHHHHHH
Q 001448 76 GARRPVRHLASVAMGRIISKGDNISVYSRVSSLQGFLSDGK-KSEPQ--KVAGAAQCLGELYRQFGRRITSGLLETTIIA 152 (1075)
Q Consensus 76 ~~g~P~R~l~a~cl~~ly~~GD~~~lf~~vn~l~~~l~~~k-~~s~~--~~~aA~~cLG~l~~~~G~~l~s~~~e~~~~l 152 (1075)
...+|.|+..|.|++++|++-|.+.++. ...+++=+-+ ...+. .+.+-+..+.++|+..-|..-.. .+...
T Consensus 186 ~~~~~~r~~aalllsk~~sR~D~~~~~~---~Fl~~~l~~~s~~~~n~~~~~g~L~al~ai~k~~~r~d~l~---~~~~~ 259 (1133)
T KOG1943|consen 186 ISSGILRRSAALLLSKLFSRTDVKDLLL---SFLDWLLDCPSTETPNIFYKLGFLIALLAIFKHGSRKDLLP---YSDTG 259 (1133)
T ss_pred hccchhHHHHHHHHHHHcccccHHHHHH---HHHHHhhcccchhhhhhHHHHHHHHHHHHHHHhcchhhhHH---Hhhhh
Confidence 2333999999999999999999988854 4444433233 33344 45778888888888777775333 33344
Q ss_pred HHHhcc----CcHHHHHHHHHHHHHHHhcCC------CC-----------------------------------Cc--hh
Q 001448 153 AKLMKF----NEEFVRQEALLLLQNALEGSG------GS-----------------------------------AA--AS 185 (1075)
Q Consensus 153 lK~lK~----~~~~~R~~~l~~L~kil~g~g------~~-----------------------------------~~--~~ 185 (1075)
++.+-. ++.+ ...-+.+-|++..+| ++ .+ +.
T Consensus 260 ~r~L~~~~~~~d~~--~llrKllvKl~QRiGlv~l~prs~sWrY~rg~rsl~~nl~~~s~~~~~~~~~~~~d~e~edv~e 337 (1133)
T KOG1943|consen 260 LRMLSVCRESNDGQ--SLLRKLLVKLVQRIGLVSLKPRSPSWRYSRGTRSLASNLDPDSFAPSEPVILQQDDDEGEDVPE 337 (1133)
T ss_pred hHhhcccccccccH--hHHHHHHHHHHHHhhheecCCCCcchhhhcccchhhhccCccccccCcccccccccccccccHH
Confidence 444432 2332 222234444444333 11 00 12
Q ss_pred HHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhcCCC-cccchhhhHhhHHhhhccCCChhHHHHHHHHHHHHHHhcc
Q 001448 186 AYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGGPC-LGVGELDNSATHCVKAIEDPIASVRDAFAEALGSLLALGM 264 (1075)
Q Consensus 186 ~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~~~~-~~~~dlE~l~sl~~K~le~s~~~vR~a~A~~La~lLa~~~ 264 (1075)
+.-.+.+. .=++++|++..||-+|||-+.-+...- |+ +-..-++++.. +|-..| ++..=|-.--.||++.-.+.
T Consensus 338 ivE~vie~-Lls~l~d~dt~VrWSaAKg~grvt~rl-p~~Lad~vi~svid-~~~p~e--~~~aWHgacLaLAELA~rGl 412 (1133)
T KOG1943|consen 338 IVEFVIEH-LLSALSDTDTVVRWSAAKGLGRVTSRL-PPELADQVIGSVID-LFNPAE--DDSAWHGACLALAELALRGL 412 (1133)
T ss_pred HHHHHHHH-HHHhccCCcchhhHHHHHHHHHHHccC-cHHHHHHHHHHHHH-hcCcCC--chhHHHHHHHHHHHHHhcCC
Confidence 34456664 556799999999999999999988863 42 12222333444 344444 45566655566666553333
Q ss_pred CCCCcCCCCCCCCCCCCCChhHHHHHHh-hhhhccc--CCCCcchhHH-HHHHHHHHHHHHhcccccCCCcchhHHHHHH
Q 001448 265 NPQAQVQPKGKGPFPPAKKLEGGLQRHL-ALPFTRA--NGAKSKNMRV-NLTLSWVYFLQAIRLKYFHPDSELQDYALQV 340 (1075)
Q Consensus 265 ~~~~~~~~~~k~~~~~~k~l~~~l~~~L-s~~f~k~--~~~~~r~~R~-Gv~~ayv~fl~~lg~~wle~~~~~~~~~~~i 340 (1075)
-.. .+++|++--++ +-.|-+. .-+++..||= ++..+|. |.+.-.+. .+..|+..+
T Consensus 413 Llp--------------s~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WA-f~Rays~~------~l~p~l~~L 471 (1133)
T KOG1943|consen 413 LLP--------------SLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWA-FARAYSPS------DLKPVLQSL 471 (1133)
T ss_pred cch--------------HHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHH-HHhcCChh------hhhHHHHHH
Confidence 221 15677654222 1223222 1133566664 5555554 44544333 234577655
Q ss_pred HHHhccCCCCCH--HHHHHHHHHHHHhhhccCChHHH-HHHHHHHHhhcccCCCCh-hHHHHHHHHHHHHHHHhCCCchh
Q 001448 341 MDMLRADIFVDS--HALACVLYILRIGVTDQMTEPTQ-RSFLVFLGKQLQAVDASP-FMKIAALRTLSYTLKTLGEVPSE 416 (1075)
Q Consensus 341 ~~ll~~~~~~~~--~~r~~v~~ILr~~v~~~L~E~~Q-~~~~~~l~~~~~~~~~s~-~~lv~aL~el~~Ll~~LGsa~~~ 416 (1075)
...+....-.|+ ++||...=.|...||++ |+..- .+++..+ +-..-.+-+. |.-+| --+.. .+.
T Consensus 472 ~s~LL~~AlFDrevncRRAAsAAlqE~VGR~-~n~p~Gi~Lis~~-dy~sV~~rsNcy~~l~------~~ia~----~~~ 539 (1133)
T KOG1943|consen 472 ASALLIVALFDREVNCRRAASAALQENVGRQ-GNFPHGISLISTI-DYFSVTNRSNCYLDLC------VSIAE----FSG 539 (1133)
T ss_pred HHHHHHHHhcCchhhHhHHHHHHHHHHhccC-CCCCCchhhhhhc-chhhhhhhhhHHHHHh------HHHHh----hhh
Confidence 555543333444 47888888888888752 22100 1111110 0000000000 11111 00111 112
Q ss_pred hHHHHHHHHHHH-hcCCChHHHHHHHHHHHHHHHhCCcchh-hHHHHHHHHHHhhhhhcccccCCcccchhhhhchHHHH
Q 001448 417 FKEVLDSTVVAA-VSHSSQLVRIEAALTLRALAEVDPTCVS-GLITYGVTTLNALRENVSFEKGSSLMVELDSLHGQATV 494 (1075)
Q Consensus 417 ~~~~l~d~L~~l-L~hps~svRi~AA~cLr~~~~a~Ps~l~-~ll~~~~~~L~~~~~~l~~~~~~~~~~~~~~~~G~a~a 494 (1075)
..+.+.+.++.- +.|=+-.+|-.|||||+.+....|.+.. ..+...++.... .++.--||+-.+
T Consensus 540 y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~~pk~~a~~~L~~lld~~ls--------------~~~~~r~g~~la 605 (1133)
T KOG1943|consen 540 YREPVFNHLLTKKVCHWDVKIRELAAYALHKLSLTEPKYLADYVLPPLLDSTLS--------------KDASMRHGVFLA 605 (1133)
T ss_pred HHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhHHhhcccchhhhhhhhcC--------------CChHHhhhhHHH
Confidence 234445555544 9999999999999999999999998776 444444333211 123444999999
Q ss_pred HHHHHhhcCCC
Q 001448 495 VAALIFISPKL 505 (1075)
Q Consensus 495 LAALl~~~~~~ 505 (1075)
.+-++.+-.+.
T Consensus 606 ~~ev~~~~~~l 616 (1133)
T KOG1943|consen 606 AGEVIGALRKL 616 (1133)
T ss_pred HHHHHHHhhhh
Confidence 99999988855
No 40
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=94.41 E-value=19 Score=45.19 Aligned_cols=327 Identities=17% Similarity=0.111 Sum_probs=189.0
Q ss_pred hhHhHHHHHHHHHHhccCCchhhHHhHHHHHHhhhcC--CCCChhhHHHHHHHHHHHHHHHhhHhhcCHHHHHHHHHHHh
Q 001448 79 RPVRHLASVAMGRIISKGDNISVYSRVSSLQGFLSDG--KKSEPQKVAGAAQCLGELYRQFGRRITSGLLETTIIAAKLM 156 (1075)
Q Consensus 79 ~P~R~l~a~cl~~ly~~GD~~~lf~~vn~l~~~l~~~--k~~s~~~~~aA~~cLG~l~~~~G~~l~s~~~e~~~~llK~l 156 (1075)
+=+||-.||.++.+-+.= .|+.++.+|++- -+.|-..|+-.+-|..++-.-.|..+.+-....+.++-+.+
T Consensus 490 eYVRnttarafavvasal-------gip~llpfLkavc~SkkSwqaRhTgIkivqqIail~Gcsvlphl~~lv~ii~~gl 562 (1172)
T KOG0213|consen 490 EYVRNTTARAFAVVASAL-------GIPALLPFLKAVCGSKKSWQARHTGIKIVQQIAILSGCSVLPHLKPLVKIIEHGL 562 (1172)
T ss_pred HHHHHHHHHHHHHHHHHh-------CcHHHHHHHHHHhccccchhhhchhhHHHHHHHHHhcchhhhhhHHHHHHHHHhh
Confidence 345999999998887641 466777787731 13355677889999999999999999999999999999999
Q ss_pred ccCcHHHHHHHHHHHHHHHhcCCCCCc---hhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhcCCCc-ccc--hh
Q 001448 157 KFNEEFVRQEALLLLQNALEGSGGSAA---ASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGGPCL-GVG--EL 230 (1075)
Q Consensus 157 K~~~~~~R~~~l~~L~kil~g~g~~~~---~~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~~~~~-~~~--dl 230 (1075)
|.-+-.+|.-.-.+++.+.+..+.-.. +++.+-+||-+..+ ++ +-|.++.+.. .|+ ... ++
T Consensus 563 ~De~qkVR~itAlalsalaeaa~Pygie~fDsVlkpLwkgir~h----rg--------k~laafLkAi-gyliplmd~ey 629 (1172)
T KOG0213|consen 563 KDEQQKVRTITALALSALAEAATPYGIEQFDSVLKPLWKGIRQH----RG--------KELAAFLKAI-GYLIPLMDAEY 629 (1172)
T ss_pred cccchhhhhHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHc----cC--------hHHHHHHHHH-hhccccccHHH
Confidence 988888998888888887776664321 36788888843322 21 2222333321 122 222 22
Q ss_pred hh-----HhhHHhhhccCCChhHHHHHHHHHHHHHHhccCCCCcCCCCCCCCCCCCCChhHHHHHHhhhhhcccCCCCcc
Q 001448 231 DN-----SATHCVKAIEDPIASVRDAFAEALGSLLALGMNPQAQVQPKGKGPFPPAKKLEGGLQRHLALPFTRANGAKSK 305 (1075)
Q Consensus 231 E~-----l~sl~~K~le~s~~~vR~a~A~~La~lLa~~~~~~~~~~~~~k~~~~~~k~l~~~l~~~Ls~~f~k~~~~~~r 305 (1075)
+. +.-+..|-+.++|.+...-+=+-+-...+.- + ..| .=++ +|.+-.++-....|-.....|
T Consensus 630 a~yyTrevmlil~rEf~sPDeemkkivLKVv~qcc~t~---G--v~~-------~y~r-~dilp~ff~~fw~rrmA~drr 696 (1172)
T KOG0213|consen 630 ASYYTREVMLILIREFGSPDEEMKKIVLKVVKQCCATD---G--VEP-------AYIR-FDILPEFFFSFWGRRMALDRR 696 (1172)
T ss_pred HHHhHHHHHHHHHHhhCCChHHHHHHHHHHHHHHhccc---C--CCH-------HHHh-hhhhHHHHhhhhhhhhhcccc
Confidence 22 2335667777777776665555444433211 1 000 0011 222221333333332211122
Q ss_pred hhHHHHHHHHHHHHHHhcccccCCCcchhHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhhh----ccCChHHHHHHHHH
Q 001448 306 NMRVNLTLSWVYFLQAIRLKYFHPDSELQDYALQVMDMLRADIFVDSHALACVLYILRIGVT----DQMTEPTQRSFLVF 381 (1075)
Q Consensus 306 ~~R~Gv~~ayv~fl~~lg~~wle~~~~~~~~~~~i~~ll~~~~~~~~~~r~~v~~ILr~~v~----~~L~E~~Q~~~~~~ 381 (1075)
.-| -+.+.-+.+-+.+|... .+...|.++=..+ ..-|+.+--....+++ .=++|+-...++..
T Consensus 697 ~yk-qlv~ttv~ia~KvG~~~--------~v~R~v~~lkde~----e~yrkm~~etv~ri~~~lg~~diderleE~lidg 763 (1172)
T KOG0213|consen 697 NYK-QLVDTTVEIAAKVGSDP--------IVSRVVLDLKDEP----EQYRKMVAETVSRIVGRLGAADIDERLEERLIDG 763 (1172)
T ss_pred chh-hHHHHHHHHHHHhCchH--------HHHHHhhhhcccc----HHHHHHHHHHHHHHHhccccccccHHHHHHHHHH
Confidence 222 24445566667777332 2222222322111 1123332222222232 22356655666666
Q ss_pred HHhhcccCCCChhHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHhCCcc
Q 001448 382 LGKQLQAVDASPFMKIAALRTLSYTLKTLGEVPSEFKEVLDSTVVAAVSHSSQLVRIEAALTLRALAEVDPTC 454 (1075)
Q Consensus 382 l~~~~~~~~~s~~~lv~aL~el~~Ll~~LGsa~~~~~~~l~d~L~~lL~hps~svRi~AA~cLr~~~~a~Ps~ 454 (1075)
|+..++..+.... +-|.-.+-...+||.-..+....+...++..|-|++.-||.+||-..-.++..+-.|
T Consensus 764 il~Afqeqtt~d~---vml~gfg~V~~~lg~r~kpylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc 833 (1172)
T KOG0213|consen 764 ILYAFQEQTTEDS---VMLLGFGTVVNALGGRVKPYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTC 833 (1172)
T ss_pred HHHHHHhcccchh---hhhhhHHHHHHHHhhccccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhc
Confidence 6665533222222 334445666778888777777788899999999999999999999998888655444
No 41
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=94.17 E-value=0.24 Score=47.10 Aligned_cols=87 Identities=22% Similarity=0.157 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHHHHhhHhhcCHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhccCc
Q 001448 123 VAGAAQCLGELYRQFGRRITSGLLETTIIAAKLMKFNEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVDK 202 (1075)
Q Consensus 123 ~~aA~~cLG~l~~~~G~~l~s~~~e~~~~llK~lK~~~~~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~Dk 202 (1075)
|-+++-+|.++-..+|..+...+++++..+++.+...++.+|+.+..+|-.+.+..++.+- ....+||....|. ..|.
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l-~~f~~IF~~L~kl-~~D~ 80 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEIL-PYFNEIFDALCKL-SADP 80 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH-HcCC
Confidence 4589999999999999999999999999999999999999999999999999998886553 3578899866665 6899
Q ss_pred chHHHHHHH
Q 001448 203 SFVVRIAGA 211 (1075)
Q Consensus 203 s~~Vr~aAa 211 (1075)
...||-+|.
T Consensus 81 d~~Vr~~a~ 89 (97)
T PF12755_consen 81 DENVRSAAE 89 (97)
T ss_pred chhHHHHHH
Confidence 999998883
No 42
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=93.96 E-value=0.11 Score=49.14 Aligned_cols=109 Identities=15% Similarity=0.097 Sum_probs=79.1
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHHHhcCCCCCchhHHH-HHHHHHHHHhccCcchHHHHHHHHHHHHHHhhcCCCcc
Q 001448 148 TTIIAAKLMKFNEEFVRQEALLLLQNALEGSGGSAAASAYS-EAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGGPCLG 226 (1075)
Q Consensus 148 ~~~~llK~lK~~~~~~R~~~l~~L~kil~g~g~~~~~~~~~-di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~~~~~~ 226 (1075)
.+..+.+.++..+..+|..++.+|.++..+...... .+.+ ++++. .-..+.|++..|+..|+.||..+.... +. .
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~-~~~~~~~i~~-l~~~l~~~~~~v~~~a~~~L~~l~~~~-~~-~ 83 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQ-AVVEAGGLPA-LVQLLKSEDEEVVKAALWALRNLAAGP-ED-N 83 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHH-HHHHCCChHH-HHHHHhCCCHHHHHHHHHHHHHHccCc-HH-H
Confidence 566678888887788999999999998876322122 2222 56664 344578899999999999999998753 21 1
Q ss_pred cchh--hhHhhHHhhhccCCChhHHHHHHHHHHHHH
Q 001448 227 VGEL--DNSATHCVKAIEDPIASVRDAFAEALGSLL 260 (1075)
Q Consensus 227 ~~dl--E~l~sl~~K~le~s~~~vR~a~A~~La~lL 260 (1075)
...+ ..+.....+.+++.+..+|..+..+|+.+.
T Consensus 84 ~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 84 KLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 1111 126778888999999999999999998764
No 43
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=93.92 E-value=2.7 Score=47.77 Aligned_cols=133 Identities=14% Similarity=0.081 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHhhHhhcCH---HHHHHHHHHHhccCcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhccCcc
Q 001448 127 AQCLGELYRQFGRRITSGL---LETTIIAAKLMKFNEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVDKS 203 (1075)
Q Consensus 127 ~~cLG~l~~~~G~~l~s~~---~e~~~~llK~lK~~~~~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~Dks 203 (1075)
++..+.|.+..-..+.... ...-+.+...+++.+..+|..++++|+-.+- .|...+.+.++. +..++....
T Consensus 4 L~i~~~lL~~~~~~~~~~~~l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~L-----ld~~~a~~~l~l-~~~~~~~~~ 77 (298)
T PF12719_consen 4 LSITQSLLENVSSSLSPNISLESLLDSLILPAVQSSDPAVRELALKCLGLCCL-----LDKELAKEHLPL-FLQALQKDD 77 (298)
T ss_pred HHHHHHHHHhccccCCCcchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH-----hChHHHHHHHHH-HHHHHHhCC
Confidence 3444555554443333221 2233456688899999999999999987554 345677777775 444444348
Q ss_pred hHHHHHHHHHHHHHHhhcC-CCccc-------chhhhHhhHHhhhccCCChhHHHHHHHHHHHHHHhccC
Q 001448 204 FVVRIAGARCLKAFAHIGG-PCLGV-------GELDNSATHCVKAIEDPIASVRDAFAEALGSLLALGMN 265 (1075)
Q Consensus 204 ~~Vr~aAa~cL~~l~~~~~-~~~~~-------~dlE~l~sl~~K~le~s~~~vR~a~A~~La~lLa~~~~ 265 (1075)
..|+..|.+++.-+....| .++.. .+-+.+..+..|++++.++++|..+++.++.++.....
T Consensus 78 ~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i 147 (298)
T PF12719_consen 78 EEVKITALKALFDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRI 147 (298)
T ss_pred HHHHHHHHHHHHHHHHHcCchhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCC
Confidence 9999999999998877643 33322 13357999999999999999999999999999966444
No 44
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.55 E-value=5.4 Score=48.49 Aligned_cols=279 Identities=15% Similarity=0.150 Sum_probs=145.2
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHHHHhcCCCCC-chhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhcCCCcc-
Q 001448 149 TIIAAKLMKFNEEFVRQEALLLLQNALEGSGGSA-AASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGGPCLG- 226 (1075)
Q Consensus 149 ~~~llK~lK~~~~~~R~~~l~~L~kil~g~g~~~-~~~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~~~~~~- 226 (1075)
+...+..+++...+.+..+...+.|.+..--..- ++-+..-+..........|....+|+.|+.+|..++..+..--.
T Consensus 68 ~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~ 147 (514)
T KOG0166|consen 68 LELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKV 147 (514)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccc
Confidence 4455666667777778899999999998555422 33333344444444444577788999999999999885311000
Q ss_pred cchhhhHhhHHhhhccCCChhHHHHHHHHHHHHHHhccCCCCcCCCCCCCCCCCCCCh-hHHHHHHhhhhhcccCCCCcc
Q 001448 227 VGELDNSATHCVKAIEDPIASVRDAFAEALGSLLALGMNPQAQVQPKGKGPFPPAKKL-EGGLQRHLALPFTRANGAKSK 305 (1075)
Q Consensus 227 ~~dlE~l~sl~~K~le~s~~~vR~a~A~~La~lLa~~~~~~~~~~~~~k~~~~~~k~l-~~~l~~~Ls~~f~k~~~~~~r 305 (1075)
--| ...+-+..+.+.+++..||.-+.-+||.+....-.-+. .-+ -.+|. -|-..+.+... -.
T Consensus 148 vv~-agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd-------------~vl~~g~l~-pLl~~l~~~~~--~~ 210 (514)
T KOG0166|consen 148 VVD-AGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRD-------------YVLSCGALD-PLLRLLNKSDK--LS 210 (514)
T ss_pred ccc-CCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHH-------------HHHhhcchH-HHHHHhccccc--hH
Confidence 011 13556788999999999999999999998733211000 000 01111 11111111110 00
Q ss_pred hhHHHHHHHHHHHHHHhcccccCCCcc---hhHHHHHHHHHhccCCCCCHHHH----HHHHHHHHHhhhccCChHHHH--
Q 001448 306 NMRVNLTLSWVYFLQAIRLKYFHPDSE---LQDYALQVMDMLRADIFVDSHAL----ACVLYILRIGVTDQMTEPTQR-- 376 (1075)
Q Consensus 306 ~~R~Gv~~ayv~fl~~lg~~wle~~~~---~~~~~~~i~~ll~~~~~~~~~~r----~~v~~ILr~~v~~~L~E~~Q~-- 376 (1075)
-.| -++=+...|.+. +. +..+ +...+..+..++- + .|+..+ -.++|+ . .--.|..|.
T Consensus 211 ~lR-n~tW~LsNlcrg--k~---P~P~~~~v~~iLp~L~~ll~-~--~D~~Vl~Da~WAlsyL----s-dg~ne~iq~vi 276 (514)
T KOG0166|consen 211 MLR-NATWTLSNLCRG--KN---PSPPFDVVAPILPALLRLLH-S--TDEEVLTDACWALSYL----T-DGSNEKIQMVI 276 (514)
T ss_pred HHH-HHHHHHHHHHcC--CC---CCCcHHHHHHHHHHHHHHHh-c--CCHHHHHHHHHHHHHH----h-cCChHHHHHHH
Confidence 111 112122222221 11 0001 1122211222221 1 233322 223333 1 111344442
Q ss_pred --HHHHHHHhhcccCCCChhHHHHHHHHHHHHHHHhCCCchhh-HHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHhCC
Q 001448 377 --SFLVFLGKQLQAVDASPFMKIAALRTLSYTLKTLGEVPSEF-KEVLDSTVVAAVS-HSSQLVRIEAALTLRALAEVDP 452 (1075)
Q Consensus 377 --~~~~~l~~~~~~~~~s~~~lv~aL~el~~Ll~~LGsa~~~~-~~~l~d~L~~lL~-hps~svRi~AA~cLr~~~~a~P 452 (1075)
..+..+++.+...++ .+.+-||+++|..+..-+.-...+ --+....+..++. ||...+|=+|+|++-.++.-.+
T Consensus 277 ~~gvv~~LV~lL~~~~~--~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~ 354 (514)
T KOG0166|consen 277 DAGVVPRLVDLLGHSSP--KVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQ 354 (514)
T ss_pred HccchHHHHHHHcCCCc--ccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCH
Confidence 223333333333322 344567777666433222111111 2246667788888 9999999999999999999999
Q ss_pred cchhhHHH
Q 001448 453 TCVSGLIT 460 (1075)
Q Consensus 453 s~l~~ll~ 460 (1075)
.++..+++
T Consensus 355 ~qiqaVid 362 (514)
T KOG0166|consen 355 EQIQAVID 362 (514)
T ss_pred HHHHHHHH
Confidence 88888875
No 45
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=93.40 E-value=0.43 Score=50.11 Aligned_cols=93 Identities=15% Similarity=0.151 Sum_probs=73.9
Q ss_pred cHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhcCCCcccchhhhHhhHHhh
Q 001448 160 EEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGGPCLGVGELDNSATHCVK 239 (1075)
Q Consensus 160 ~~~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~~~~~~~~dlE~l~sl~~K 239 (1075)
|+.+|.-++.+++.++..-++-.+ .....+++ ++.|++..||..|..|+..|..+. ++...+ .+..-.++
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve-~~~~~l~~-----~L~D~~~~VR~~al~~Ls~Li~~d--~ik~k~--~l~~~~l~ 70 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVE-PYLPNLYK-----CLRDEDPLVRKTALLVLSHLILED--MIKVKG--QLFSRILK 70 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHH-hHHHHHHH-----HHCCCCHHHHHHHHHHHHHHHHcC--ceeehh--hhhHHHHH
Confidence 577899999999998887775443 55666666 489999999999999999999963 442222 44455667
Q ss_pred hccCCChhHHHHHHHHHHHHHHh
Q 001448 240 AIEDPIASVRDAFAEALGSLLAL 262 (1075)
Q Consensus 240 ~le~s~~~vR~a~A~~La~lLa~ 262 (1075)
.+.|+|+++|..+..++.+++-.
T Consensus 71 ~l~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 71 LLVDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHh
Confidence 88999999999999999998833
No 46
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=93.32 E-value=0.81 Score=41.40 Aligned_cols=86 Identities=33% Similarity=0.374 Sum_probs=61.6
Q ss_pred HHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHhhHhhcCHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhcCCCCCchh
Q 001448 106 SSLQGFLSDGKKSEPQKVAGAAQCLGELYRQFGRRITSGLLETTIIAAKLMKFNEEFVRQEALLLLQNALEGSGGSAAAS 185 (1075)
Q Consensus 106 n~l~~~l~~~k~~s~~~~~aA~~cLG~l~~~~G~~l~s~~~e~~~~llK~lK~~~~~~R~~~l~~L~kil~g~g~~~~~~ 185 (1075)
..+.+.+.. +.++..+..|+.+||++ ..++++..+.+.++..+..+|..+..+|+++ | ++.
T Consensus 2 ~~L~~~l~~--~~~~~vr~~a~~~L~~~----------~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i----~---~~~ 62 (88)
T PF13646_consen 2 PALLQLLQN--DPDPQVRAEAARALGEL----------GDPEAIPALIELLKDEDPMVRRAAARALGRI----G---DPE 62 (88)
T ss_dssp HHHHHHHHT--SSSHHHHHHHHHHHHCC----------THHHHHHHHHHHHTSSSHHHHHHHHHHHHCC----H---HHH
T ss_pred HHHHHHHhc--CCCHHHHHHHHHHHHHc----------CCHhHHHHHHHHHcCCCHHHHHHHHHHHHHh----C---CHH
Confidence 456677731 66788888999999922 2447899999999888999999999999984 4 233
Q ss_pred HHHHHHHHHHHHhccCcchHHHHHHHHHH
Q 001448 186 AYSEAFRLIMRFAIVDKSFVVRIAGARCL 214 (1075)
Q Consensus 186 ~~~di~K~~~r~~~~Dks~~Vr~aAa~cL 214 (1075)
...-+.+ ...+|.+..||.+|++.|
T Consensus 63 ~~~~L~~----~l~~~~~~~vr~~a~~aL 87 (88)
T PF13646_consen 63 AIPALIK----LLQDDDDEVVREAAAEAL 87 (88)
T ss_dssp THHHHHH----HHTC-SSHHHHHHHHHHH
T ss_pred HHHHHHH----HHcCCCcHHHHHHHHhhc
Confidence 3333333 234568889999998876
No 47
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.02 E-value=25 Score=46.39 Aligned_cols=205 Identities=15% Similarity=0.123 Sum_probs=125.1
Q ss_pred HhHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHhhHhhcCHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHh--c---
Q 001448 103 SRVSSLQGFLSDGKKSEPQKVAGAAQCLGELYRQFGRRITSGLLETTIIAAKLMKFNEEFVRQEALLLLQNALE--G--- 177 (1075)
Q Consensus 103 ~~vn~l~~~l~~~k~~s~~~~~aA~~cLG~l~~~~G~~l~s~~~e~~~~llK~lK~~~~~~R~~~l~~L~kil~--g--- 177 (1075)
+--|.+.+-.+ ..+...+..++.||-.+|+.++.....+.+-.+.-++=.+|-.+...|..++.+|..|.+ .
T Consensus 697 ~I~n~L~ds~q---s~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d 773 (1176)
T KOG1248|consen 697 DIFNSLLDSFQ---SSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVILSLKEVNVKARRNAFALLVFIGAIQSSLD 773 (1176)
T ss_pred HHHHHHHHHHh---ccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhc
Confidence 33344444443 223334568999999999999933333333333333444477788889999999888773 1
Q ss_pred CCCCCchhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhcCCCcccchhhhHhhHHhhhccCCChhHHHHHHHHHH
Q 001448 178 SGGSAAASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGGPCLGVGELDNSATHCVKAIEDPIASVRDAFAEALG 257 (1075)
Q Consensus 178 ~g~~~~~~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~~~~~~~~dlE~l~sl~~K~le~s~~~vR~a~A~~La 257 (1075)
-|.--.+...-++.. ....++.-.++.+++...=-+..++.+...++...-++.+.+.+-=.+-+.+.++|.++-..+.
T Consensus 774 ~g~e~~~~~lnefl~-~Isagl~gd~~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fik 852 (1176)
T KOG1248|consen 774 DGNEPASAILNEFLS-IISAGLVGDSTRVVASDIVAITHILQEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIK 852 (1176)
T ss_pred ccccchHHHHHHHHH-HHHhhhcccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 111111346777777 4666666666666655322233333333345666677778888888899999999998887777
Q ss_pred HHHHhccC-CCCcCCCCCCCCCCCCCChhHHHHHHhhhhhcccCCCCcchhHHHHHHHHHHHHHHhcccccCC
Q 001448 258 SLLALGMN-PQAQVQPKGKGPFPPAKKLEGGLQRHLALPFTRANGAKSKNMRVNLTLSWVYFLQAIRLKYFHP 329 (1075)
Q Consensus 258 ~lLa~~~~-~~~~~~~~~k~~~~~~k~l~~~l~~~Ls~~f~k~~~~~~r~~R~Gv~~ayv~fl~~lg~~wle~ 329 (1075)
.+. +. |.... ...+|+.|..++. .++-. ++++|..+-.-.-.+++..|...+|.
T Consensus 853 vlv---~~~pe~~l----------~~~~~~LL~sll~--ls~d~---k~~~r~Kvr~LlekLirkfg~~eLe~ 907 (1176)
T KOG1248|consen 853 VLV---YKFPEECL----------SPHLEELLPSLLA--LSHDH---KIKVRKKVRLLLEKLIRKFGAEELES 907 (1176)
T ss_pred HHH---HcCCHHHH----------hhhHHHHHHHHHH--HHHhh---hHHHHHHHHHHHHHHHHHhCHHHHHh
Confidence 655 22 21100 1123444432222 23332 79999999999999999999877765
No 48
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=92.87 E-value=0.067 Score=44.74 Aligned_cols=54 Identities=35% Similarity=0.233 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHhhcCCCcccchhhhHhhHHhhhccCCChhHHHHHHHHHHHH
Q 001448 205 VVRIAGARCLKAFAHIGGPCLGVGELDNSATHCVKAIEDPIASVRDAFAEALGSL 259 (1075)
Q Consensus 205 ~Vr~aAa~cL~~l~~~~~~~~~~~dlE~l~sl~~K~le~s~~~vR~a~A~~La~l 259 (1075)
.||.+|+.+|..+.... +..-..-+..+.....+.++++++.||.+++.+||++
T Consensus 2 ~vR~~A~~aLg~l~~~~-~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 2 RVRRAAAWALGRLAEGC-PELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHCTTTTT-HHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHhhHhccc-HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 68999999998766542 2222224457888999999999999999999999864
No 49
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=92.79 E-value=42 Score=44.00 Aligned_cols=145 Identities=18% Similarity=0.159 Sum_probs=106.1
Q ss_pred CChhHhHHHHHHHHHHhccCCchhhHHhHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHhhHhhcCHHHHHHHHHHHh
Q 001448 77 ARRPVRHLASVAMGRIISKGDNISVYSRVSSLQGFLSDGKKSEPQKVAGAAQCLGELYRQFGRRITSGLLETTIIAAKLM 156 (1075)
Q Consensus 77 ~g~P~R~l~a~cl~~ly~~GD~~~lf~~vn~l~~~l~~~k~~s~~~~~aA~~cLG~l~~~~G~~l~s~~~e~~~~llK~l 156 (1075)
.+--+|+.+|+-++++-++-..-..=++|....++.+ .-+++..-|+|+-.|++|- .-|=.+.+..++++..+.|.+
T Consensus 353 ~dt~VrWSaAKg~grvt~rlp~~Lad~vi~svid~~~--p~e~~~aWHgacLaLAELA-~rGlLlps~l~dVvplI~kaL 429 (1133)
T KOG1943|consen 353 TDTVVRWSAAKGLGRVTSRLPPELADQVIGSVIDLFN--PAEDDSAWHGACLALAELA-LRGLLLPSLLEDVVPLILKAL 429 (1133)
T ss_pred CcchhhHHHHHHHHHHHccCcHHHHHHHHHHHHHhcC--cCCchhHHHHHHHHHHHHH-hcCCcchHHHHHHHHHHHHHh
Confidence 5566799999999999999776666667778888664 2224556689999999774 457778899999999999988
Q ss_pred cc--------CcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhcCCC
Q 001448 157 KF--------NEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGGPC 224 (1075)
Q Consensus 157 K~--------~~~~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~~~~ 224 (1075)
-- .-..+|-++....=+.-++-..+.-+.+...+.-...=.++=|+...+|+||...+.+++..-+.+
T Consensus 430 ~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAlqE~VGR~~n~ 505 (1133)
T KOG1943|consen 430 HYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAALQENVGRQGNF 505 (1133)
T ss_pred hhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHHHHHhccCCCC
Confidence 53 234588888888877777666443233444444444445678999999999988888887653344
No 50
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.69 E-value=37 Score=43.15 Aligned_cols=187 Identities=12% Similarity=0.136 Sum_probs=127.2
Q ss_pred HHHHHHHHHHHHhh-------------cCCChhHhHHHHHHHHHHhccCCchhhHHhHHHHHHhhhcCCCCCh----hhH
Q 001448 61 WQRKCEDALYSLLI-------------LGARRPVRHLASVAMGRIISKGDNISVYSRVSSLQGFLSDGKKSEP----QKV 123 (1075)
Q Consensus 61 ~Q~~l~~~L~~ll~-------------~~~g~P~R~l~a~cl~~ly~~GD~~~lf~~vn~l~~~l~~~k~~s~----~~~ 123 (1075)
+=|+|...|+++|. .+.+-|-=+.-.==+-.|++.||.. -+|.+|++.+-+-++.|.+. .++
T Consensus 216 ~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~d-aSd~M~DiLaqvatntdsskN~GnAIL 294 (866)
T KOG1062|consen 216 YFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDAD-ASDLMNDILAQVATNTDSSKNAGNAIL 294 (866)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCcc-HHHHHHHHHHHHHhcccccccchhHHH
Confidence 34557777777776 1233343222112245667777763 46666666666543334432 244
Q ss_pred HHHHHHHHHHHHHHhhHhhcCHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhccCcc
Q 001448 124 AGAAQCLGELYRQFGRRITSGLLETTIIAAKLMKFNEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVDKS 203 (1075)
Q Consensus 124 ~aA~~cLG~l~~~~G~~l~s~~~e~~~~llK~lK~~~~~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~Dks 203 (1075)
.=++.|+-+++.. +++-...++++-|.+++..--.||-++..|-+++..-.. +. .-||- ..=.|+.|-+
T Consensus 295 YE~V~TI~~I~~~-----~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~-av-qrHr~----tIleCL~DpD 363 (866)
T KOG1062|consen 295 YECVRTIMDIRSN-----SGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPT-AV-QRHRS----TILECLKDPD 363 (866)
T ss_pred HHHHHHHHhccCC-----chHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcH-HH-HHHHH----HHHHHhcCCc
Confidence 4455555555543 345567899999999998888999999999999883221 11 22443 3456899999
Q ss_pred hHHHHHHHHHHHHHHhhcCCCcccchhhhHhhHHhhhccCCChhHHHHHHHHHHHHHHhccCCC
Q 001448 204 FVVRIAGARCLKAFAHIGGPCLGVGELDNSATHCVKAIEDPIASVRDAFAEALGSLLALGMNPQ 267 (1075)
Q Consensus 204 ~~Vr~aAa~cL~~l~~~~~~~~~~~dlE~l~sl~~K~le~s~~~vR~a~A~~La~lLa~~~~~~ 267 (1075)
..+|+=|.+-..+|.+. +++..+..=..+++|.++.+.|.-.|.-+.++. -.+.|.
T Consensus 364 ~SIkrralELs~~lvn~-------~Nv~~mv~eLl~fL~~~d~~~k~~~as~I~~la-EkfaP~ 419 (866)
T KOG1062|consen 364 VSIKRRALELSYALVNE-------SNVRVMVKELLEFLESSDEDFKADIASKIAELA-EKFAPD 419 (866)
T ss_pred HHHHHHHHHHHHHHhcc-------ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH-HhcCCc
Confidence 99999999988888875 677788888999999999999999999998876 445443
No 51
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=92.18 E-value=0.16 Score=42.52 Aligned_cols=55 Identities=25% Similarity=0.203 Sum_probs=49.1
Q ss_pred hhhHHHHHHHHHHHHHHHhhHhhcCHHHHHHHHHHHhccCcHHHHHHHHHHHHHH
Q 001448 120 PQKVAGAAQCLGELYRQFGRRITSGLLETTIIAAKLMKFNEEFVRQEALLLLQNA 174 (1075)
Q Consensus 120 ~~~~~aA~~cLG~l~~~~G~~l~s~~~e~~~~llK~lK~~~~~~R~~~l~~L~ki 174 (1075)
|..|.+|+.+||.+-+..++.+....++++..+.+.++..++.+|..+..+|+++
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 4566789999999888888999999999999999999988889999999999864
No 52
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=92.14 E-value=6.2 Score=47.14 Aligned_cols=210 Identities=14% Similarity=0.057 Sum_probs=131.0
Q ss_pred HHhccCChhhHHHHHHHHHHHHHHHhhcCCChhHhHHHHHHHHHHhccCCch-hhHHhHHHHHHhhhcCCCCChhhHHHH
Q 001448 48 SAIDEEPKESILLWQRKCEDALYSLLILGARRPVRHLASVAMGRIISKGDNI-SVYSRVSSLQGFLSDGKKSEPQKVAGA 126 (1075)
Q Consensus 48 ~~l~~~~k~di~~~Q~~l~~~L~~ll~~~~g~P~R~l~a~cl~~ly~~GD~~-~lf~~vn~l~~~l~~~k~~s~~~~~aA 126 (1075)
+.+-..+|+..-.....+.+.+.++......+++|...++|++.+..|-... .+-+.++...+-+. + ..++..+..+
T Consensus 173 ~il~~l~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~~~l~~~~~~~~-~-~~~~~~~~~~ 250 (415)
T PF12460_consen 173 AILCSLRKDVSLPDLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLDEFLDSLLQSIS-S-SEDSELRPQA 250 (415)
T ss_pred HHHHcCCcccCccCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHHHHHHHHHhhhc-c-cCCcchhHHH
Confidence 4555556655543444578888888888888999999999999999992222 23333333333331 1 2222233357
Q ss_pred HHHHHHHHHHHhhHhhcCHHHHHHHHHHHhcc-CcHHHHHHHHHHHHHHHhcCCCCC---chhHHHHHHHH-HHHH----
Q 001448 127 AQCLGELYRQFGRRITSGLLETTIIAAKLMKF-NEEFVRQEALLLLQNALEGSGGSA---AASAYSEAFRL-IMRF---- 197 (1075)
Q Consensus 127 ~~cLG~l~~~~G~~l~s~~~e~~~~llK~lK~-~~~~~R~~~l~~L~kil~g~g~~~---~~~~~~di~K~-~~r~---- 197 (1075)
+..++-+-+.+ +++..+.....+-+++.- .++.+...+=++++=++....... .....|=.||| .+-.
T Consensus 251 ~~~~~Wi~KaL---v~R~~~~~~~~~~~L~~lL~~~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~ 327 (415)
T PF12460_consen 251 LEILIWITKAL---VMRGHPLATELLDKLLELLSSPELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPK 327 (415)
T ss_pred HHHHHHHHHHH---HHcCCchHHHHHHHHHHHhCChhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHH
Confidence 77777666654 445555554444444442 335666677778877777633221 23557777872 1111
Q ss_pred ---hccCcchHHHHHHHHHHHHHHhhcCCCcccchhhhHhhHHhhhccCCChhHHHHHHHHHHHHHHh
Q 001448 198 ---AIVDKSFVVRIAGARCLKAFAHIGGPCLGVGELDNSATHCVKAIEDPIASVRDAFAEALGSLLAL 262 (1075)
Q Consensus 198 ---~~~Dks~~Vr~aAa~cL~~l~~~~~~~~~~~dlE~l~sl~~K~le~s~~~vR~a~A~~La~lLa~ 262 (1075)
...+.+-.++......|..+.++.+.-+..++++.+..+.+.+++-+|.++|.++-++|..++-.
T Consensus 328 L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~ 395 (415)
T PF12460_consen 328 LLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEE 395 (415)
T ss_pred HHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHc
Confidence 11222222555555566666776533357889999999999999999999999999999998843
No 53
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=92.09 E-value=5.9 Score=50.97 Aligned_cols=194 Identities=20% Similarity=0.187 Sum_probs=135.0
Q ss_pred HhccCChhhHHHHH-HHHHHHHHHHhhcCCChhHhHHHHHHHHHHhcc-C-CchhhHHhHHHHHHhhh-cCCCCChhhHH
Q 001448 49 AIDEEPKESILLWQ-RKCEDALYSLLILGARRPVRHLASVAMGRIISK-G-DNISVYSRVSSLQGFLS-DGKKSEPQKVA 124 (1075)
Q Consensus 49 ~l~~~~k~di~~~Q-~~l~~~L~~ll~~~~g~P~R~l~a~cl~~ly~~-G-D~~~lf~~vn~l~~~l~-~~k~~s~~~~~ 124 (1075)
..+-.++.||-.++ +.+++++ ..+--+.|+=...-|..+.+. + +..--|. +.+--+++ ..||.......
T Consensus 241 ~~d~l~~~di~~ki~~~l~t~~-----~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~--~ll~~~~ki~~kDaN~~v~~ 313 (815)
T KOG1820|consen 241 NFDLLPRVDILSKITKNLETEM-----LSKKWKDRKEALEELVAILEEAKKEIVKGYT--GLLGILLKIRLKDANINVVM 313 (815)
T ss_pred ccccCchhhhhhhcChHHHHhh-----hccchHHHHHHHHHHHHHHhccccccccCcc--hHHHHHHHHhccCcchhHHH
Confidence 33446667766666 4444444 567777787777777766653 3 2222222 12222222 24565556667
Q ss_pred HHHHHHHHHHHHHhhHhhcCHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhccCcch
Q 001448 125 GAAQCLGELYRQFGRRITSGLLETTIIAAKLMKFNEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVDKSF 204 (1075)
Q Consensus 125 aA~~cLG~l~~~~G~~l~s~~~e~~~~llK~lK~~~~~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~Dks~ 204 (1075)
-|++||+.+...+|...-.........++.-+|-.-+.+|-++..++.+++.+.+ . +.+.+.|.- ++.++..
T Consensus 314 ~aa~~l~~ia~~lr~~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~--l-~~~~~~I~e-----~lk~knp 385 (815)
T KOG1820|consen 314 LAAQILELIAKKLRPLFRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNSTP--L-SKMSEAILE-----ALKGKNP 385 (815)
T ss_pred HHHHHHHHHHHhcchhhHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhccc--H-HHHHHHHHH-----HhcCCCh
Confidence 7999999999999999888888899999999999989999999999999888222 2 233444433 3788998
Q ss_pred HHHHHHHHHHHHHHhh---cCCC-cccchhhhHhhHHhhhccCCChhHHHHHHHHHHHHH
Q 001448 205 VVRIAGARCLKAFAHI---GGPC-LGVGELDNSATHCVKAIEDPIASVRDAFAEALGSLL 260 (1075)
Q Consensus 205 ~Vr~aAa~cL~~l~~~---~~~~-~~~~dlE~l~sl~~K~le~s~~~vR~a~A~~La~lL 260 (1075)
.++ .+|+..+.+. .++- .-....+.++..|.|..-|.+.+||.|+.+++|.++
T Consensus 386 ~~k---~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~ 442 (815)
T KOG1820|consen 386 QIK---GECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVM 442 (815)
T ss_pred hhH---HHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHH
Confidence 888 5566555442 2221 244567789999999999999999999999999987
No 54
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.87 E-value=45 Score=42.24 Aligned_cols=334 Identities=17% Similarity=0.115 Sum_probs=189.5
Q ss_pred HHHHHHHHHHHHHhhHhhcCHHHHHHHHHH-HhccCcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhccCcc
Q 001448 125 GAAQCLGELYRQFGRRITSGLLETTIIAAK-LMKFNEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVDKS 203 (1075)
Q Consensus 125 aA~~cLG~l~~~~G~~l~s~~~e~~~~llK-~lK~~~~~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~Dks 203 (1075)
||-+||+=.-+.-|+.|+. -.. -++| .+++-.=..|-.+.-+++.|+.|-...-...+.-+..+.+.+. ++|++
T Consensus 345 AAg~CL~l~A~~~~D~Iv~---~Vl-~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~l-m~D~s 419 (859)
T KOG1241|consen 345 AAGVCLMLFAQCVGDDIVP---HVL-PFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINL-MSDPS 419 (859)
T ss_pred HHHHHHHHHHHHhcccchh---hhH-HHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHH-hcCch
Confidence 8999999888888988865 222 3344 6776566789999999999999877544555666777755555 56999
Q ss_pred hHHHHHHHHHHHHHHhhcCCCc-ccchhhhHhhHHhhhccCCChhHHHHHHHHHHHHHHhccCCCCcCCCCCCCCCCCC-
Q 001448 204 FVVRIAGARCLKAFAHIGGPCL-GVGELDNSATHCVKAIEDPIASVRDAFAEALGSLLALGMNPQAQVQPKGKGPFPPA- 281 (1075)
Q Consensus 204 ~~Vr~aAa~cL~~l~~~~~~~~-~~~dlE~l~sl~~K~le~s~~~vR~a~A~~La~lLa~~~~~~~~~~~~~k~~~~~~- 281 (1075)
..||..++.|+..+...- |.- .... .+.+..--.+++=+++-|.+..-|.+-.-..-..+++.+.. .++.+.
T Consensus 420 l~VkdTaAwtlgrI~d~l-~e~~~n~~--~l~~~l~~l~~gL~DePrva~N~CWAf~~Laea~~eA~~s~---~qt~~~t 493 (859)
T KOG1241|consen 420 LWVKDTAAWTLGRIADFL-PEAIINQE--LLQSKLSALLEGLNDEPRVASNVCWAFISLAEAAYEAAVSN---GQTDPAT 493 (859)
T ss_pred hhhcchHHHHHHHHHhhc-hhhcccHh--hhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHhccCC---CCCCccc
Confidence 999999999999999863 332 2222 33333334455556677888777776543221112211111 122111
Q ss_pred CChhHHHHHHhhhhhcccCCCCcchhHHHHHHHHHHHHHHhcccccCCCcchhHHHHHHHHHhcc--CCC----CCHH--
Q 001448 282 KKLEGGLQRHLALPFTRANGAKSKNMRVNLTLSWVYFLQAIRLKYFHPDSELQDYALQVMDMLRA--DIF----VDSH-- 353 (1075)
Q Consensus 282 k~l~~~l~~~Ls~~f~k~~~~~~r~~R~Gv~~ayv~fl~~lg~~wle~~~~~~~~~~~i~~ll~~--~~~----~~~~-- 353 (1075)
+-.++.+.. |-..=-|+.| .-.+.|+.-.+|...++..--...-. .+..+...+++-+.+ +++ .|..
T Consensus 494 ~~y~~ii~~-Ll~~tdr~dg-nqsNLR~AAYeALmElIk~st~~vy~---~v~~~~l~il~kl~q~i~~~~l~~~dr~q~ 568 (859)
T KOG1241|consen 494 PFYEAIIGS-LLKVTDRADG-NQSNLRSAAYEALMELIKNSTDDVYP---MVQKLTLVILEKLDQTISSQILSLADRAQL 568 (859)
T ss_pred hhHHHHHHH-HHhhcccccc-chhhHHHHHHHHHHHHHHcCcHHHHH---HHHHHHHHHHHHHHHHHHHHhccHhhHHHH
Confidence 234555553 2222222221 25788999888888888764311110 011222233332220 011 1111
Q ss_pred ------HHHHHHHHHHHhhhccCChHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHH
Q 001448 354 ------ALACVLYILRIGVTDQMTEPTQRSFLVFLGKQLQAVDASPFMKIAALRTLSYTLKTLGEVPSEFKEVLDSTVVA 427 (1075)
Q Consensus 354 ------~r~~v~~ILr~~v~~~L~E~~Q~~~~~~l~~~~~~~~~s~~~lv~aL~el~~Ll~~LGsa~~~~~~~l~d~L~~ 427 (1075)
-+.|+.-|+|.+=.+. .|-+ -.++..+++.+++ .-|.-+---|+-+++.|+..||.-+..-...+..-|..
T Consensus 569 ~eLQs~Lc~~Lq~i~rk~~~~~-~~~~-d~iM~lflri~~s-~~s~~v~e~a~laV~tl~~~Lg~~F~kym~~f~pyL~~ 645 (859)
T KOG1241|consen 569 NELQSLLCNTLQSIIRKVGSDI-REVS-DQIMGLFLRIFES-KRSAVVHEEAFLAVSTLAESLGKGFAKYMPAFKPYLLM 645 (859)
T ss_pred HHHHHHHHHHHHHHHHHccccc-hhHH-HHHHHHHHHHHcC-CccccchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 1345555544332211 1111 1233333333334 22333556689999999999999999888888888888
Q ss_pred Hhc-CCChHHHHHHHHHHHHHHHhCCcchhhHHHHHHHHHHhhhhhcccccCCc
Q 001448 428 AVS-HSSQLVRIEAALTLRALAEVDPTCVSGLITYGVTTLNALRENVSFEKGSS 480 (1075)
Q Consensus 428 lL~-hps~svRi~AA~cLr~~~~a~Ps~l~~ll~~~~~~L~~~~~~l~~~~~~~ 480 (1075)
-|. ...+-|=..|.--.--++.++-.-+.|.-+..++ .+..-|+.+..+|
T Consensus 646 gL~n~~e~qVc~~aVglVgdl~raL~~~i~py~d~~mt---~Lvq~Lss~~~hR 696 (859)
T KOG1241|consen 646 GLSNFQEYQVCAAAVGLVGDLARALEDDILPYCDELMT---VLVQCLSSPNLHR 696 (859)
T ss_pred HhhcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH---HHHHHccCccccc
Confidence 784 4556666666666666776666555554444444 3333344443444
No 55
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=91.83 E-value=0.55 Score=44.43 Aligned_cols=108 Identities=18% Similarity=0.123 Sum_probs=74.5
Q ss_pred hHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHH---HhhHhhcCHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhcCCC
Q 001448 104 RVSSLQGFLSDGKKSEPQKVAGAAQCLGELYRQ---FGRRITSGLLETTIIAAKLMKFNEEFVRQEALLLLQNALEGSGG 180 (1075)
Q Consensus 104 ~vn~l~~~l~~~k~~s~~~~~aA~~cLG~l~~~---~G~~l~s~~~e~~~~llK~lK~~~~~~R~~~l~~L~kil~g~g~ 180 (1075)
.+..+.++++ +.++..+..|+.||+.+... .-..+.. ...+..+++.+...+..+|..++.+|..+..+-+.
T Consensus 8 ~i~~l~~~l~---~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~--~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~ 82 (120)
T cd00020 8 GLPALVSLLS---SSDENVQREAAWALSNLSAGNNDNIQAVVE--AGGLPALVQLLKSEDEEVVKAALWALRNLAAGPED 82 (120)
T ss_pred ChHHHHHHHH---cCCHHHHHHHHHHHHHHhcCCHHHHHHHHH--CCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHH
Confidence 4667788886 34467777899999988753 3333322 26777888888888899999999999999875432
Q ss_pred CCchhHH-HHHHHHHHHHhccCcchHHHHHHHHHHHHHH
Q 001448 181 SAAASAY-SEAFRLIMRFAIVDKSFVVRIAGARCLKAFA 218 (1075)
Q Consensus 181 ~~~~~~~-~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~ 218 (1075)
..+..+ ..+.+. .-..+.|.+..||..|+.++..+.
T Consensus 83 -~~~~~~~~g~l~~-l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 83 -NKLIVLEAGGVPK-LVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred -HHHHHHHCCChHH-HHHHHhcCCHHHHHHHHHHHHHhh
Confidence 111122 224453 344477788999999999987764
No 56
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=91.65 E-value=31 Score=39.96 Aligned_cols=71 Identities=17% Similarity=-0.015 Sum_probs=49.0
Q ss_pred CHHHHHHHHHHHhcc-CcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHh
Q 001448 144 GLLETTIIAAKLMKF-NEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAH 219 (1075)
Q Consensus 144 ~~~e~~~~llK~lK~-~~~~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~ 219 (1075)
..+.++..+..++++ .|.+.+...+.+|.+-+...+... -+++.+ +++.++.||..+||.+=..|+...+.
T Consensus 19 ~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~~~~~----~~~~~~-~~~kGl~~kk~~vR~~w~~~~~~~~~ 90 (339)
T PF12074_consen 19 LSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFLSSEL----PKKVVD-AFKKGLKDKKPPVRRAWLLCLGEALW 90 (339)
T ss_pred hHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCcCC----CHHHHH-HHHHHhcCCCCcHHHHHHHHHHHHHh
Confidence 567777788887766 566667788888888777774333 345555 34446888888888888777765554
No 57
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.55 E-value=5.4 Score=49.21 Aligned_cols=234 Identities=15% Similarity=0.120 Sum_probs=150.2
Q ss_pred CcccchhHHHHHHHHhhhccCCCCchhHHHHHHHHHHHhccCChhhHHHHH---HHHHHHHHHHhhcCCChhHhHHHHHH
Q 001448 12 LSRFGVLVAQLESIVASASQQSPDPLLCFDLLSDLISAIDEEPKESILLWQ---RKCEDALYSLLILGARRPVRHLASVA 88 (1075)
Q Consensus 12 ~~~~~~~~a~le~~~~~~~~~~~~~~~~~~wL~~L~~~l~~~~k~di~~~Q---~~l~~~L~~ll~~~~g~P~R~l~a~c 88 (1075)
||||+-||.|.| +.-|.-..|..|-+.+...+|..=.+.= ..+|++-=.-+.+.- -+.=..+.+|
T Consensus 458 LsRys~wv~~~~-----------~~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~eLVp~l-~~IL~~l~~a 525 (885)
T KOG2023|consen 458 LSRYSKWVVQDS-----------RDEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEELVPYL-EYILDQLVFA 525 (885)
T ss_pred HhhhhhhHhcCC-----------hHhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccchhHHHH-HHHHHHHHHH
Confidence 789999998766 4456666677777777666554311110 111111000000000 1112335566
Q ss_pred HHHHhccCCchhhHHhHHHHHHhhhc--CC-------------------CCChhhHHHHHHHHHHHHHHHhhHhhcCHHH
Q 001448 89 MGRIISKGDNISVYSRVSSLQGFLSD--GK-------------------KSEPQKVAGAAQCLGELYRQFGRRITSGLLE 147 (1075)
Q Consensus 89 l~~ly~~GD~~~lf~~vn~l~~~l~~--~k-------------------~~s~~~~~aA~~cLG~l~~~~G~~l~s~~~e 147 (1075)
|.. |.+-+-.-|||.|.++.|.... +| |++ +-+.--+.|+..+-.++|.......++
T Consensus 526 f~k-YQ~KNLlILYDAIgtlAdsvg~~Ln~~~YiqiLmPPLi~KW~~lsd~D-KdLfPLLEClSsia~AL~~gF~P~~~~ 603 (885)
T KOG2023|consen 526 FGK-YQKKNLLILYDAIGTLADSVGHALNKPAYIQILMPPLIEKWELLSDSD-KDLFPLLECLSSIASALGVGFLPYAQP 603 (885)
T ss_pred HHH-HhhcceehHHHHHHHHHHHHHHhcCcHHHHHHhccHHHHHHHhcCccc-chHHHHHHHHHHHHHHHhccccccCHH
Confidence 654 6777889999999999998741 11 112 223567899999999999999888888
Q ss_pred HHHHHHHHhcc--------C--------cHHHHHHHHHHHHHHHhcCCCCCchhH-HHHHHHHHHHHhccCcchHHHHHH
Q 001448 148 TTIIAAKLMKF--------N--------EEFVRQEALLLLQNALEGSGGSAAASA-YSEAFRLIMRFAIVDKSFVVRIAG 210 (1075)
Q Consensus 148 ~~~~llK~lK~--------~--------~~~~R~~~l~~L~kil~g~g~~~~~~~-~~di~K~~~r~~~~Dks~~Vr~aA 210 (1075)
+.+-.++++.+ + +.-....++..+.-+.+|+|+.+.+-+ ..+|-+ .+=.|+.|....||-+|
T Consensus 604 Vy~Rc~~il~~t~q~~~~~~~~~~~~~pdkdfiI~sLDL~SGLaegLg~~ie~Lva~snl~~-lll~C~~D~~peVRQS~ 682 (885)
T KOG2023|consen 604 VYQRCFRILQKTLQLLAKVQQDPTVEAPDKDFIIVSLDLLSGLAEGLGSHIEPLVAQSNLLD-LLLQCLQDEVPEVRQSA 682 (885)
T ss_pred HHHHHHHHHHHHHHHHHhccCCccccCCCcceEEEeHHHHhHHHHHhhhchHHHhhhccHHH-HHHHHhccCChHHHHHH
Confidence 88777777653 1 223556789999999999998875433 344555 56678999999999999
Q ss_pred HHHHHHHHhhcCCCcccchhhhHhhHHhhhccCCChhHHHHHHHHHHHHHH
Q 001448 211 ARCLKAFAHIGGPCLGVGELDNSATHCVKAIEDPIASVRDAFAEALGSLLA 261 (1075)
Q Consensus 211 a~cL~~l~~~~~~~~~~~dlE~l~sl~~K~le~s~~~vR~a~A~~La~lLa 261 (1075)
..-|.-+.+...... ...++.+.-+.---++..+-++-.-+--++|++..
T Consensus 683 FALLGDltk~c~~~v-~p~~~~fl~~lg~Nl~~~~isv~nNA~WAiGeia~ 732 (885)
T KOG2023|consen 683 FALLGDLTKACFEHV-IPNLADFLPILGANLNPENISVCNNAIWAIGEIAL 732 (885)
T ss_pred HHHHHHHHHHHHHhc-cchHHHHHHHHhhcCChhhchHHHHHHHHHHHHHH
Confidence 888888877531111 12334444444456666777777777778888763
No 58
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.93 E-value=6.5 Score=48.49 Aligned_cols=248 Identities=19% Similarity=0.139 Sum_probs=134.7
Q ss_pred HHHHHHHHHHhhcCCChhHhHHHHHHHHHHh----ccCCchhhHHhHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHh
Q 001448 63 RKCEDALYSLLILGARRPVRHLASVAMGRII----SKGDNISVYSRVSSLQGFLSDGKKSEPQKVAGAAQCLGELYRQFG 138 (1075)
Q Consensus 63 ~~l~~~L~~ll~~~~g~P~R~l~a~cl~~ly----~~GD~~~lf~~vn~l~~~l~~~k~~s~~~~~aA~~cLG~l~~~~G 138 (1075)
.+.-+.|+.++...+.-|.+-++-+--+++| +.|.+-..|+. ... +...++..+.-+..|+.||+.++..-+
T Consensus 136 a~~~~~l~~~g~~~~~~~~~i~l~~~~a~~~~~~~s~~~~~~~~~~---~~~-lg~~~ss~~~d~~~~~~~l~~~~~~~D 211 (823)
T KOG2259|consen 136 AQYLDNLLAIGCPVCEEDIYILLLHGVAKVRSSISSTGNRLLLYCF---HLP-LGVSPSSLTHDREHAARGLIYLEHDQD 211 (823)
T ss_pred HHHHHHHHHhccCCCchhhHHHHHhhhHHHhhhcccccchHHHHHH---hhh-cccCCCcccccHHHHHHHHHHHhcCCC
Confidence 4455666666666666666655555555544 34555544441 111 111122223323334444444332222
Q ss_pred hH--------------hhcCHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhcCCCCC-----chhHHHHHHHHHHHHhc
Q 001448 139 RR--------------ITSGLLETTIIAAKLMKFNEEFVRQEALLLLQNALEGSGGSA-----AASAYSEAFRLIMRFAI 199 (1075)
Q Consensus 139 ~~--------------l~s~~~e~~~~llK~lK~~~~~~R~~~l~~L~kil~g~g~~~-----~~~~~~di~K~~~r~~~ 199 (1075)
-. -.-+...+.+-+.|.++.....+|.++++++--.=....... +....-|.|-.+.+ ++
T Consensus 212 ~~Vrt~A~eglL~L~eg~kL~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~D~aF~~vC~-~v 290 (823)
T KOG2259|consen 212 FRVRTHAVEGLLALSEGFKLSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEEKLKDAAFSSVCR-AV 290 (823)
T ss_pred cchHHHHHHHHHhhcccccccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhhhhHHHHHHHHHH-HH
Confidence 11 112345567888889998999999999998865444442122 23345555554444 58
Q ss_pred cCcchHHHHHHHHHHHHHHhhcCCCc------------------------------ccchhh---------------hH-
Q 001448 200 VDKSFVVRIAGARCLKAFAHIGGPCL------------------------------GVGELD---------------NS- 233 (1075)
Q Consensus 200 ~Dks~~Vr~aAa~cL~~l~~~~~~~~------------------------------~~~dlE---------------~l- 233 (1075)
.|.+..||+-|++-|..+-+-+..++ |++.=| ++
T Consensus 291 ~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~advpsee~d~~~~siI 370 (823)
T KOG2259|consen 291 RDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWNADVPSEEDDEEEESII 370 (823)
T ss_pred hcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCccccccCchhhccccccccc
Confidence 99999999999998865522110011 111000 00
Q ss_pred ----hhHHhhhccCCChhHHHHHHHHHHHHHHhccCCCCcCCCCCCCCCCCCCChhHHHHHHhhhhhcccCCCCcchhHH
Q 001448 234 ----ATHCVKAIEDPIASVRDAFAEALGSLLALGMNPQAQVQPKGKGPFPPAKKLEGGLQRHLALPFTRANGAKSKNMRV 309 (1075)
Q Consensus 234 ----~sl~~K~le~s~~~vR~a~A~~La~lLa~~~~~~~~~~~~~k~~~~~~k~l~~~l~~~Ls~~f~k~~~~~~r~~R~ 309 (1075)
.-..+-++|+.-|+||.|+-..+..+. ++.+ .-.+.++. +|..-|+.-- -+||.
T Consensus 371 ~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La---~ssP--------------~FA~~ald-fLvDMfNDE~----~~VRL 428 (823)
T KOG2259|consen 371 PSGACGALVHGLEDEFYEVRRAAVASLCSLA---TSSP--------------GFAVRALD-FLVDMFNDEI----EVVRL 428 (823)
T ss_pred cccccceeeeechHHHHHHHHHHHHHHHHHH---cCCC--------------CcHHHHHH-HHHHHhccHH----HHHHH
Confidence 134567788888888888887777765 2211 12244666 8888886664 67777
Q ss_pred HHHHHHHHHHHHhcccccCCCcchhHHHHHHHHHhc
Q 001448 310 NLTLSWVYFLQAIRLKYFHPDSELQDYALQVMDMLR 345 (1075)
Q Consensus 310 Gv~~ayv~fl~~lg~~wle~~~~~~~~~~~i~~ll~ 345 (1075)
-...+...+...+- + -+.++..|.+-+.
T Consensus 429 ~ai~aL~~Is~~l~---i-----~eeql~~il~~L~ 456 (823)
T KOG2259|consen 429 KAIFALTMISVHLA---I-----REEQLRQILESLE 456 (823)
T ss_pred HHHHHHHHHHHHhe---e-----cHHHHHHHHHHHH
Confidence 66655555544421 1 1356655555554
No 59
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=90.69 E-value=0.51 Score=35.01 Aligned_cols=30 Identities=33% Similarity=0.275 Sum_probs=25.6
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHHHh
Q 001448 421 LDSTVVAAVSHSSQLVRIEAALTLRALAEV 450 (1075)
Q Consensus 421 l~d~L~~lL~hps~svRi~AA~cLr~~~~a 450 (1075)
+...+++++.+|+..||.+|++||-.++..
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 356789999999999999999999998854
No 60
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=90.38 E-value=54 Score=42.21 Aligned_cols=331 Identities=16% Similarity=0.074 Sum_probs=176.8
Q ss_pred hhHhHHHHHHHHHHhccCCchhhHHhHHHHHHhhhcC-CCCChhhHHHHHHHHHHHHHHHhhHhhcCHHHHHHHHHHHhc
Q 001448 79 RPVRHLASVAMGRIISKGDNISVYSRVSSLQGFLSDG-KKSEPQKVAGAAQCLGELYRQFGRRITSGLLETTIIAAKLMK 157 (1075)
Q Consensus 79 ~P~R~l~a~cl~~ly~~GD~~~lf~~vn~l~~~l~~~-k~~s~~~~~aA~~cLG~l~~~~G~~l~s~~~e~~~~llK~lK 157 (1075)
-++|-++..++..+..-.|.-. |.++.+.+.+-.. +|.+-..+-......-++|+.+|.+.+ -.+.+....-.+|
T Consensus 290 dsVr~~a~~~~~~l~~l~~~~~--d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~~~~--~~~~~~~~~~l~~ 365 (759)
T KOG0211|consen 290 DSVREAAVESLVSLLDLLDDDD--DVVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGPSAT--RTQLVPPVSNLLK 365 (759)
T ss_pred hhHHHHHHHHHHHHHHhcCCch--hhhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhccccC--cccchhhHHHHhc
Confidence 4556666666666666666653 4444433333211 122222333333444567777777443 3334455556666
Q ss_pred cCcHHHHHHHHHHHHHHHhcCCCCC-chhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhcCCCcccchhhhHhhH
Q 001448 158 FNEEFVRQEALLLLQNALEGSGGSA-AASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGGPCLGVGELDNSATH 236 (1075)
Q Consensus 158 ~~~~~~R~~~l~~L~kil~g~g~~~-~~~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~~~~~~~~dlE~l~sl 236 (1075)
..+.-.|+++-.-..+...-..... .+..-.-|+- .++-...|.+..||.+.+--...+.... + -.+-.+.+..+
T Consensus 366 ~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp-~~~~lv~d~~~~vr~a~a~~~~~~~p~~-~--k~~ti~~llp~ 441 (759)
T KOG0211|consen 366 DEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILP-EVQVLVLDNALHVRSALASVITGLSPIL-P--KERTISELLPL 441 (759)
T ss_pred chhhhhhHHhhcchHHHhhhcCcccccccchhhhhH-HHHHHHhcccchHHHHHhccccccCccC-C--cCcCccccChh
Confidence 6666777776665555444222100 1111222333 4666678888889888765443333221 1 22333466667
Q ss_pred HhhhccCCChhHHHHHHHHHHHHHHhccCCCCcCCCCCCCCCCCCCChhHHHHHHhhhhhcccCCCCcchhHHHHHHHHH
Q 001448 237 CVKAIEDPIASVRDAFAEALGSLLALGMNPQAQVQPKGKGPFPPAKKLEGGLQRHLALPFTRANGAKSKNMRVNLTLSWV 316 (1075)
Q Consensus 237 ~~K~le~s~~~vR~a~A~~La~lLa~~~~~~~~~~~~~k~~~~~~k~l~~~l~~~Ls~~f~k~~~~~~r~~R~Gv~~ayv 316 (1075)
..+-+.+.+..||......+..+.......+. ....+..... -..+.... ..++|..+-+..-
T Consensus 442 ~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~-------------~~~s~slLp~-i~el~~d~---~wRvr~ail~~ip 504 (759)
T KOG0211|consen 442 LIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGI-------------STVSNSLLPA-IVELAEDL---LWRVRLAILEYIP 504 (759)
T ss_pred hhhhcchhhHHHHHhhHHHHHHHHhccCcccc-------------hhhhhhhhhh-hhhhccch---hHHHHHHHHHHHH
Confidence 77778888889999888777555422222210 0111111100 00111111 5788888888777
Q ss_pred HHHHHhcccccCCCcchhHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhhhccCC--hHHHHHHHHHHHhhcccCCCChh
Q 001448 317 YFLQAIRLKYFHPDSELQDYALQVMDMLRADIFVDSHALACVLYILRIGVTDQMT--EPTQRSFLVFLGKQLQAVDASPF 394 (1075)
Q Consensus 317 ~fl~~lg~~wle~~~~~~~~~~~i~~ll~~~~~~~~~~r~~v~~ILr~~v~~~L~--E~~Q~~~~~~l~~~~~~~~~s~~ 394 (1075)
.....+|..+... .|...++.-+ +.++.+.+.+|...+ ...+ +..| ...|.++-+ ++....+. |=.
T Consensus 505 ~la~q~~~~~~~~-----~~~~l~~~~l--~d~v~~Ir~~aa~~l-~~l~-~~~G~~w~~~~~i~k-~L~~~~q~--~y~ 572 (759)
T KOG0211|consen 505 QLALQLGVEFFDE-----KLAELLRTWL--PDHVYSIREAAARNL-PALV-ETFGSEWARLEEIPK-LLAMDLQD--NYL 572 (759)
T ss_pred HHHHhhhhHHhhH-----HHHHHHHhhh--hhhHHHHHHHHHHHh-HHHH-HHhCcchhHHHhhHH-HHHHhcCc--ccc
Confidence 7777788666532 3444444433 222233334444444 3333 2445 222333333 33322122 222
Q ss_pred HHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 001448 395 MKIAALRTLSYTLKTLGEVPSEFKEVLDSTVVAAVSHSSQLVRIEAALTLRALA 448 (1075)
Q Consensus 395 ~lv~aL~el~~Ll~~LGsa~~~~~~~l~d~L~~lL~hps~svRi~AA~cLr~~~ 448 (1075)
.=...+..+..+...+|.-. +.+.+.+.+..+..+|...||+.+|.-|..+.
T Consensus 573 ~R~t~l~si~~la~v~g~ei--~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~ 624 (759)
T KOG0211|consen 573 VRMTTLFSIHELAEVLGQEI--TCEDLLPVFLDLVKDPVANVRINVAKHLPKIL 624 (759)
T ss_pred hhhHHHHHHHHHHHHhccHH--HHHHHhHHHHHhccCCchhhhhhHHHHHHHHH
Confidence 33445566667777776532 36678999999999999999999999999998
No 61
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=89.85 E-value=2.4 Score=44.54 Aligned_cols=90 Identities=18% Similarity=0.233 Sum_probs=70.2
Q ss_pred hhhHHHHHHHHHHHHHHHhhHhhcCHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhcCCCCC--chhHHHHHHHHHHHH
Q 001448 120 PQKVAGAAQCLGELYRQFGRRITSGLLETTIIAAKLMKFNEEFVRQEALLLLQNALEGSGGSA--AASAYSEAFRLIMRF 197 (1075)
Q Consensus 120 ~~~~~aA~~cLG~l~~~~G~~l~s~~~e~~~~llK~lK~~~~~~R~~~l~~L~kil~g~g~~~--~~~~~~di~K~~~r~ 197 (1075)
|..|..|+.++|++...++..+ +..+..+.+.++..++.+|..++..|...+.. | .. .......+.+
T Consensus 2 ~~vR~n~i~~l~DL~~r~~~~v----e~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~-d-~ik~k~~l~~~~l~----- 70 (178)
T PF12717_consen 2 PSVRNNAIIALGDLCIRYPNLV----EPYLPNLYKCLRDEDPLVRKTALLVLSHLILE-D-MIKVKGQLFSRILK----- 70 (178)
T ss_pred HHHHHHHHHHHHHHHHhCcHHH----HhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHc-C-ceeehhhhhHHHHH-----
Confidence 5677889999999999887655 44556688999999999999999999998763 2 12 2222234443
Q ss_pred hccCcchHHHHHHHHHHHHHHhh
Q 001448 198 AIVDKSFVVRIAGARCLKAFAHI 220 (1075)
Q Consensus 198 ~~~Dks~~Vr~aAa~cL~~l~~~ 220 (1075)
++.|.+..||..|..|+.++...
T Consensus 71 ~l~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 71 LLVDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHh
Confidence 47999999999999999999886
No 62
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=89.21 E-value=7.1 Score=46.64 Aligned_cols=148 Identities=17% Similarity=0.107 Sum_probs=96.8
Q ss_pred HHHHHHHhhcCCChhHhHHHHHHHHHHhccCCchhhHHhHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHhhHhhcCH
Q 001448 66 EDALYSLLILGARRPVRHLASVAMGRIISKGDNISVYSRVSSLQGFLSDGKKSEPQKVAGAAQCLGELYRQFGRRITSGL 145 (1075)
Q Consensus 66 ~~~L~~ll~~~~g~P~R~l~a~cl~~ly~~GD~~~lf~~vn~l~~~l~~~k~~s~~~~~aA~~cLG~l~~~~G~~l~s~~ 145 (1075)
.+.|.+.+ ..+.+.+|.-+++.|+.+... +.+..|...++ +.+|..+.+++..+|. .|
T Consensus 88 ~~~L~~~L-~d~~~~vr~aaa~ALg~i~~~-------~a~~~L~~~L~---~~~p~vR~aal~al~~----r~------- 145 (410)
T TIGR02270 88 LRSVLAVL-QAGPEGLCAGIQAALGWLGGR-------QAEPWLEPLLA---ASEPPGRAIGLAALGA----HR------- 145 (410)
T ss_pred HHHHHHHh-cCCCHHHHHHHHHHHhcCCch-------HHHHHHHHHhc---CCChHHHHHHHHHHHh----hc-------
Confidence 34444444 334555899999999976543 24557777775 6678777677777764 11
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhcCCCc
Q 001448 146 LETTIIAAKLMKFNEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGGPCL 225 (1075)
Q Consensus 146 ~e~~~~llK~lK~~~~~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~~~~~ 225 (1075)
.+....+.+.++..++.+|.++..+|++ +|... .... .+.++.|.+..||.+|+..+..+-.
T Consensus 146 ~~~~~~L~~~L~d~d~~Vra~A~raLG~----l~~~~---a~~~-----L~~al~d~~~~VR~aA~~al~~lG~------ 207 (410)
T TIGR02270 146 HDPGPALEAALTHEDALVRAAALRALGE----LPRRL---SEST-----LRLYLRDSDPEVRFAALEAGLLAGS------ 207 (410)
T ss_pred cChHHHHHHHhcCCCHHHHHHHHHHHHh----hcccc---chHH-----HHHHHcCCCHHHHHHHHHHHHHcCC------
Confidence 2344568888888899999999999998 44221 1122 2234889999999999998855532
Q ss_pred ccchhhhHhhHHhhhccCCChhHHHHHHHHHHH
Q 001448 226 GVGELDNSATHCVKAIEDPIASVRDAFAEALGS 258 (1075)
Q Consensus 226 ~~~dlE~l~sl~~K~le~s~~~vR~a~A~~La~ 258 (1075)
+.-...|.++...++..++..++..++.
T Consensus 208 -----~~A~~~l~~~~~~~g~~~~~~l~~~lal 235 (410)
T TIGR02270 208 -----RLAWGVCRRFQVLEGGPHRQRLLVLLAV 235 (410)
T ss_pred -----HhHHHHHHHHHhccCccHHHHHHHHHHh
Confidence 1334566665566666666666555544
No 63
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.11 E-value=72 Score=40.16 Aligned_cols=187 Identities=20% Similarity=0.174 Sum_probs=125.2
Q ss_pred HHHHH----HHHHHHHHhhc-------CCChhHhHHHHHHHHHHhccCCchhhHHh--------HHHHHHhhhcCCCCCh
Q 001448 60 LWQRK----CEDALYSLLIL-------GARRPVRHLASVAMGRIISKGDNISVYSR--------VSSLQGFLSDGKKSEP 120 (1075)
Q Consensus 60 ~~Q~~----l~~~L~~ll~~-------~~g~P~R~l~a~cl~~ly~~GD~~~lf~~--------vn~l~~~l~~~k~~s~ 120 (1075)
.+||+ .++.|+.+.++ .|-.-+|-+.+.-|...|-.-|.-.=-+. .-.+-++|. |+-|
T Consensus 158 ~hqkk~~qgVeeml~rL~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~---d~~p 234 (1005)
T KOG1949|consen 158 HHQKKVRQGVEEMLYRLYKPILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLE---DPYP 234 (1005)
T ss_pred HHHHHHhhhHHHHHHHHHhHHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhc---CCCc
Confidence 35654 56667777763 36677899999999999987665441111 125566776 7789
Q ss_pred hhHHHHHHHHHHHHHHHhhHhhcCHHHHHHHHHHHhcc--------CcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHH
Q 001448 121 QKVAGAAQCLGELYRQFGRRITSGLLETTIIAAKLMKF--------NEEFVRQEALLLLQNALEGSGGSAAASAYSEAFR 192 (1075)
Q Consensus 121 ~~~~aA~~cLG~l~~~~G~~l~s~~~e~~~~llK~lK~--------~~~~~R~~~l~~L~kil~g~g~~~~~~~~~di~K 192 (1075)
..|.-|+.-+-.++..|..+|-+ +++.++||. .-+-+|++.+..|.-++.+ .....+.+-+.+
T Consensus 235 ~VRS~a~~gv~k~~s~fWe~iP~------~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~n---p~sh~~le~~Lp 305 (1005)
T KOG1949|consen 235 MVRSTAILGVCKITSKFWEMIPP------TILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDN---PLSHPLLEQLLP 305 (1005)
T ss_pred hHHHHHHHHHHHHHHHHHHHcCH------HHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcC---ccchhHHHHHHH
Confidence 99888888888899999988842 234444443 3567999999999988763 334467888889
Q ss_pred HHHHHhccCcchHHHHHHHHHHHHHHhhcCCCccc-chhhhHhhHHhhhccCCChhHHHHHHHHHHHHHHhccCCC
Q 001448 193 LIMRFAIVDKSFVVRIAGARCLKAFAHIGGPCLGV-GELDNSATHCVKAIEDPIASVRDAFAEALGSLLALGMNPQ 267 (1075)
Q Consensus 193 ~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~~~~~~~-~dlE~l~sl~~K~le~s~~~vR~a~A~~La~lLa~~~~~~ 267 (1075)
+.++++.|++-.||.|+.+-+.-+-..-...+|. --+|. + +-.+|..+-+| ++-++.++...+-|-
T Consensus 306 -al~~~l~D~se~VRvA~vd~ll~ik~vra~~f~~I~~~d~---~-l~~L~~d~~~v----~rr~~~li~~s~lP~ 372 (1005)
T KOG1949|consen 306 -ALRYSLHDNSEKVRVAFVDMLLKIKAVRAAKFWKICPMDH---I-LVRLETDSRPV----SRRLVSLIFNSFLPV 372 (1005)
T ss_pred -hcchhhhccchhHHHHHHHHHHHHHhhhhhhhhccccHHH---H-HHHHhccccHH----HHHHHHHHHHhhcCC
Confidence 7999999999999999999887776543122232 22222 2 22355555443 444555565556554
No 64
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=88.71 E-value=15 Score=42.17 Aligned_cols=169 Identities=31% Similarity=0.350 Sum_probs=111.8
Q ss_pred HHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHhhcCCChhHhHHHHHHHHHHhccCCchhhHHhHHHHHHhhhcCCCCC
Q 001448 40 FDLLSDLISAIDEEPKESILLWQRKCEDALYSLLILGARRPVRHLASVAMGRIISKGDNISVYSRVSSLQGFLSDGKKSE 119 (1075)
Q Consensus 40 ~~wL~~L~~~l~~~~k~di~~~Q~~l~~~L~~ll~~~~g~P~R~l~a~cl~~ly~~GD~~~lf~~vn~l~~~l~~~k~~s 119 (1075)
++.+..++....... +.-.+.+.+.+... -+++|...+.-+..+ |+. +.+..+..++. +.+
T Consensus 27 ~~~l~~~~~~~~~~~--------~~~~~~~~~~l~~~-~~~vr~~aa~~l~~~---~~~----~av~~l~~~l~---d~~ 87 (335)
T COG1413 27 LQALAELDDLILELA--------PEAADELLKLLEDE-DLLVRLSAAVALGEL---GSE----EAVPLLRELLS---DED 87 (335)
T ss_pred HHHHhccchhhcccc--------hhhHHHHHHHHcCC-CHHHHHHHHHHHhhh---chH----HHHHHHHHHhc---CCC
Confidence 445555444443333 33455555555544 788899988874433 322 24445566664 667
Q ss_pred hhhHHHHHHHHHHHHHHHhhHhhcCHHHHHHHHHHHhcc-CcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHh
Q 001448 120 PQKVAGAAQCLGELYRQFGRRITSGLLETTIIAAKLMKF-NEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFA 198 (1075)
Q Consensus 120 ~~~~~aA~~cLG~l~~~~G~~l~s~~~e~~~~llK~lK~-~~~~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~ 198 (1075)
+..+..|+.+||.+ ..++.+..+.+.+++ .+..+|..+..+|.+ +| ++....+++..
T Consensus 88 ~~vr~~a~~aLg~~----------~~~~a~~~li~~l~~d~~~~vR~~aa~aL~~----~~---~~~a~~~l~~~----- 145 (335)
T COG1413 88 PRVRDAAADALGEL----------GDPEAVPPLVELLENDENEGVRAAAARALGK----LG---DERALDPLLEA----- 145 (335)
T ss_pred HHHHHHHHHHHHcc----------CChhHHHHHHHHHHcCCcHhHHHHHHHHHHh----cC---chhhhHHHHHH-----
Confidence 77777888888732 357888899999996 678899999988887 44 23446666663
Q ss_pred ccCcc------------hHHHHHHHHHHHHHHhhcCCCcccchhhhHhhHHhhhccCCChhHHHHHHHHHHHHH
Q 001448 199 IVDKS------------FVVRIAGARCLKAFAHIGGPCLGVGELDNSATHCVKAIEDPIASVRDAFAEALGSLL 260 (1075)
Q Consensus 199 ~~Dks------------~~Vr~aAa~cL~~l~~~~~~~~~~~dlE~l~sl~~K~le~s~~~vR~a~A~~La~lL 260 (1075)
+.|.. ..||.++++-+..+.. +.........+++.+..||.+++..|+.+.
T Consensus 146 l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~~~-----------~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~ 208 (335)
T COG1413 146 LQDEDSGSAAAALDAALLDVRAAAAEALGELGD-----------PEAIPLLIELLEDEDADVRRAAASALGQLG 208 (335)
T ss_pred hccchhhhhhhhccchHHHHHHHHHHHHHHcCC-----------hhhhHHHHHHHhCchHHHHHHHHHHHHHhh
Confidence 44433 2567666665544433 255667778888888899999999999977
No 65
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.15 E-value=20 Score=45.80 Aligned_cols=136 Identities=15% Similarity=0.061 Sum_probs=98.8
Q ss_pred HHHHHHHHHHhhHhhcCHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhccCcchHHH
Q 001448 128 QCLGELYRQFGRRITSGLLETTIIAAKLMKFNEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVDKSFVVR 207 (1075)
Q Consensus 128 ~cLG~l~~~~G~~l~s~~~e~~~~llK~lK~~~~~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~Dks~~Vr 207 (1075)
++++.+.+..|.+...-+....+..++.++..+-..|.+.|-.|+..+........+ ...|..+.+..-..+|.+..||
T Consensus 828 Eai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd-~~~ev~~~Il~l~~~d~s~~vR 906 (982)
T KOG4653|consen 828 EAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSD-FFHEVLQLILSLETTDGSVLVR 906 (982)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHHHccCCchhhH
Confidence 788888899999999999999999999999776678999999999888766544443 5556666567778899999999
Q ss_pred HHHHHHHHHHHhhcC----CCcccchhhhHhhHHhhhccCCChhHHHHHHHHHHHHHHhcc
Q 001448 208 IAGARCLKAFAHIGG----PCLGVGELDNSATHCVKAIEDPIASVRDAFAEALGSLLALGM 264 (1075)
Q Consensus 208 ~aAa~cL~~l~~~~~----~~~~~~dlE~l~sl~~K~le~s~~~vR~a~A~~La~lLa~~~ 264 (1075)
+||+..+..+.+.++ |+...-.+|...++---.-..+++.+|..+-.|+=++.+..-
T Consensus 907 RaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~leei~a~l~ 967 (982)
T KOG4653|consen 907 RAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEEIQAALE 967 (982)
T ss_pred HHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHH
Confidence 999998888887542 111111233333333334455667788888888877775443
No 66
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.68 E-value=79 Score=38.92 Aligned_cols=365 Identities=16% Similarity=0.074 Sum_probs=210.5
Q ss_pred HhccCCchhhHHhHHHHHHhhhcC---CCCChhhHHHHHHHHHHHHHHHhhHhhcCHHHHHHHHHHHhccCcHHHHHHHH
Q 001448 92 IISKGDNISVYSRVSSLQGFLSDG---KKSEPQKVAGAAQCLGELYRQFGRRITSGLLETTIIAAKLMKFNEEFVRQEAL 168 (1075)
Q Consensus 92 ly~~GD~~~lf~~vn~l~~~l~~~---k~~s~~~~~aA~~cLG~l~~~~G~~l~s~~~e~~~~llK~lK~~~~~~R~~~l 168 (1075)
++..||. +.+.++.+.+-+. ...++..+ +++--+..+--.+|....+-..-++.=++-.+-....++||-+-
T Consensus 31 l~~~~~~----~~i~k~I~~L~~d~a~s~~~n~rk-GgLiGlAA~~iaLg~~~~~Y~~~iv~Pv~~cf~D~d~~vRyyAC 105 (675)
T KOG0212|consen 31 LVNNNDY----DQIRKVISELAGDYAYSPHANMRK-GGLIGLAAVAIALGIKDAGYLEKIVPPVLNCFSDQDSQVRYYAC 105 (675)
T ss_pred HHccCcH----HHHHHHHHHHHHHhccCccccccc-chHHHHHHHHHHhccccHHHHHHhhHHHHHhccCccceeeeHhH
Confidence 3455664 4555555533211 12233333 55555555555566555554555555555566667888898887
Q ss_pred HHHHHHHhcCCCCCchhHHHHHHHHHHHHhccCcchHHHHHH---HHHHHHHHhhcCCCcccchhhhHhhHHhhhccCCC
Q 001448 169 LLLQNALEGSGGSAAASAYSEAFRLIMRFAIVDKSFVVRIAG---ARCLKAFAHIGGPCLGVGELDNSATHCVKAIEDPI 245 (1075)
Q Consensus 169 ~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~Dks~~Vr~aA---a~cL~~l~~~~~~~~~~~dlE~l~sl~~K~le~s~ 245 (1075)
..+=.|.+...+..- ...-+|++...| ...|....||-+| -+-+...+.+.++ +=+++.+..+.---+-.-|
T Consensus 106 EsLYNiaKv~k~~v~-~~Fn~iFdvL~k-lsaDsd~~V~~~aeLLdRLikdIVte~~~---tFsL~~~ipLL~eriy~~n 180 (675)
T KOG0212|consen 106 ESLYNIAKVAKGEVL-VYFNEIFDVLCK-LSADSDQNVRGGAELLDRLIKDIVTESAS---TFSLPEFIPLLRERIYVIN 180 (675)
T ss_pred HHHHHHHHHhccCcc-cchHHHHHHHHH-HhcCCccccccHHHHHHHHHHHhcccccc---ccCHHHHHHHHHHHHhcCC
Confidence 777777776665553 456777774344 3789999999877 3444445544332 2245566666666666669
Q ss_pred hhHHHHHHHHHHHHHHhccCCCCcCCCCCCCCCCCCC---ChhHHHHHHhhhhhcccCCCCcchhHHHHHHHHHHHHHHh
Q 001448 246 ASVRDAFAEALGSLLALGMNPQAQVQPKGKGPFPPAK---KLEGGLQRHLALPFTRANGAKSKNMRVNLTLSWVYFLQAI 322 (1075)
Q Consensus 246 ~~vR~a~A~~La~lLa~~~~~~~~~~~~~k~~~~~~k---~l~~~l~~~Ls~~f~k~~~~~~r~~R~Gv~~ayv~fl~~l 322 (1075)
+.+|..+-+-|-.+... |.- .... .+-|.+.. |+.-+ +.+||.=+--+...|++..
T Consensus 181 ~~tR~flv~Wl~~Lds~---P~~----------~m~~yl~~~ldGLf~-----~LsD~---s~eVr~~~~t~l~~fL~eI 239 (675)
T KOG0212|consen 181 PMTRQFLVSWLYVLDSV---PDL----------EMISYLPSLLDGLFN-----MLSDS---SDEVRTLTDTLLSEFLAEI 239 (675)
T ss_pred chHHHHHHHHHHHHhcC---CcH----------HHHhcchHHHHHHHH-----HhcCC---cHHHHHHHHHHHHHHHHHH
Confidence 99999998888876622 110 0000 11111111 22222 7999988888888999997
Q ss_pred cccccCCCcchh-HHHHHHHHHhccCCC-CCHH-HHHHHHHHHHHhhhccCChHHHHHHHHHHHhhcc---cCCCChhHH
Q 001448 323 RLKYFHPDSELQ-DYALQVMDMLRADIF-VDSH-ALACVLYILRIGVTDQMTEPTQRSFLVFLGKQLQ---AVDASPFMK 396 (1075)
Q Consensus 323 g~~wle~~~~~~-~~~~~i~~ll~~~~~-~~~~-~r~~v~~ILr~~v~~~L~E~~Q~~~~~~l~~~~~---~~~~s~~~l 396 (1075)
.+. ... +|- .+.+.+-.+.+ .++. .++.+.|| +..|. .-|-..-..+...+.+.++ ..++ ++.-
T Consensus 240 ~s~------P~s~d~~-~~i~vlv~~l~ss~~~iq~~al~Wi-~efV~-i~g~~~l~~~s~il~~iLpc~s~~e~-~~i~ 309 (675)
T KOG0212|consen 240 RSS------PSSMDYD-DMINVLVPHLQSSEPEIQLKALTWI-QEFVK-IPGRDLLLYLSGILTAILPCLSDTEE-MSIK 309 (675)
T ss_pred hcC------ccccCcc-cchhhccccccCCcHHHHHHHHHHH-HHHhc-CCCcchhhhhhhhhhhcccCCCCCcc-ccHH
Confidence 632 112 344 22333332222 1222 45678888 55552 2244444444444443333 3333 2333
Q ss_pred HHHHHHHHHHHHHhCCCchh--h-HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHhCCcchhhHHHHHHHHHHhhhhhc
Q 001448 397 IAALRTLSYTLKTLGEVPSE--F-KEVLDSTVVAAVSHSSQLVRIEAALTLRALAEVDPTCVSGLITYGVTTLNALRENV 473 (1075)
Q Consensus 397 v~aL~el~~Ll~~LGsa~~~--~-~~~l~d~L~~lL~hps~svRi~AA~cLr~~~~a~Ps~l~~ll~~~~~~L~~~~~~l 473 (1075)
.++-.--+.|+.-.++.... + ...+.+.+.+.+.|.....|+++-..++-+-...|.++---.+..+..|=+-.
T Consensus 310 ~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tL--- 386 (675)
T KOG0212|consen 310 EYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTL--- 386 (675)
T ss_pred HHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhh---
Confidence 33333333344444443321 2 24789999999999999999999999999999999988777777766553322
Q ss_pred ccccCCcccchhhhhchHHHHHHHHHhhcCCCCCc
Q 001448 474 SFEKGSSLMVELDSLHGQATVVAALIFISPKLPLG 508 (1075)
Q Consensus 474 ~~~~~~~~~~~~~~~~G~a~aLAALl~~~~~~pLg 508 (1075)
+ ++ .+-+.-.++-+-|=|..++..|-|
T Consensus 387 s----d~----sd~vvl~~L~lla~i~~s~~~~~~ 413 (675)
T KOG0212|consen 387 S----DR----SDEVVLLALSLLASICSSSNSPNL 413 (675)
T ss_pred c----Cc----hhHHHHHHHHHHHHHhcCcccccH
Confidence 1 11 244566677777777777777744
No 67
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=87.66 E-value=40 Score=39.87 Aligned_cols=197 Identities=16% Similarity=0.165 Sum_probs=121.1
Q ss_pred hhhHHHHHHHHHHHHHHHhhcCCChhH-hHHHHHHHHHHhccCCch---hhHHhHHHHHHhhhc----------------
Q 001448 55 KESILLWQRKCEDALYSLLILGARRPV-RHLASVAMGRIISKGDNI---SVYSRVSSLQGFLSD---------------- 114 (1075)
Q Consensus 55 k~di~~~Q~~l~~~L~~ll~~~~g~P~-R~l~a~cl~~ly~~GD~~---~lf~~vn~l~~~l~~---------------- 114 (1075)
.++.+..-+.+.+...++|..-...|. -.++..|+--|=+.-.+. .+|..=..+..++..
T Consensus 128 ~e~f~~~l~~fv~~vw~lL~~~~~~~~~D~lv~~al~FL~~v~~~~~~~~lf~~~~~L~~Iie~VI~Pnl~~~e~D~Elf 207 (370)
T PF08506_consen 128 EEEFEPFLPTFVQAVWNLLTKISQQPKYDILVSKALQFLSSVAESPHHKNLFENKPHLQQIIEKVIFPNLCLREEDEELF 207 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHTC--SSGGGHHHHHHHHHHHHHHHTSHHHHTTT-SHHHHHHHHHHTHHHHHS--HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHcchhHHHHhCCHHHHHHHHHHhccCccCCCHHHHHHH
Confidence 355556666777778888765444444 567777877665543332 256432334444331
Q ss_pred -------------CCCCChhhHHHHHHHHHHHHHHHhhHhhcCHHHHHHHHHHHhccC---cHHHHHHHHHHHHHHHhcC
Q 001448 115 -------------GKKSEPQKVAGAAQCLGELYRQFGRRITSGLLETTIIAAKLMKFN---EEFVRQEALLLLQNALEGS 178 (1075)
Q Consensus 115 -------------~k~~s~~~~~aA~~cLG~l~~~~G~~l~s~~~e~~~~llK~lK~~---~~~~R~~~l~~L~kil~g~ 178 (1075)
+ .|.-+.|.||+..|-.+-+.+++.+...+...++.++.-..++ +..-+-.++.++..+....
T Consensus 208 EddP~EYIrrd~e~-sd~~TrR~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~ 286 (370)
T PF08506_consen 208 EDDPEEYIRRDLEG-SDSDTRRRAACDFLRSLCKKFEKQVTSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKG 286 (370)
T ss_dssp HHSHHHHHHHHSCS-S---SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS
T ss_pred ccCHHHHHHhhccc-cccCCcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhh
Confidence 1 1122456799999999999999999988888888888765542 3345667777777766533
Q ss_pred CC-----CC-chh-HHHHHHHHHHHHhcc---CcchHHHHHHHHHHHHHHhhcCCCcccchhhhHhhHHhhhccCCChhH
Q 001448 179 GG-----SA-AAS-AYSEAFRLIMRFAIV---DKSFVVRIAGARCLKAFAHIGGPCLGVGELDNSATHCVKAIEDPIASV 248 (1075)
Q Consensus 179 g~-----~~-~~~-~~~di~K~~~r~~~~---Dks~~Vr~aAa~cL~~l~~~~~~~~~~~dlE~l~sl~~K~le~s~~~v 248 (1075)
.. +. .+. -.-++|.+....=++ ++...+|+.|++++...-++ +....+..+.....+.+.++++.|
T Consensus 287 ~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~~~~~~~piLka~aik~~~~Fr~~----l~~~~l~~~~~~l~~~L~~~~~vv 362 (370)
T PF08506_consen 287 STTKSGVTQTNELVDVVDFFSQHVLPELQPDVNSHPILKADAIKFLYTFRNQ----LPKEQLLQIFPLLVNHLQSSSYVV 362 (370)
T ss_dssp --BTTB-S-B-TTS-HHHHHHHHTCHHHH-SS-S-HHHHHHHHHHHHHHGGG----S-HHHHHHHHHHHHHHTTSS-HHH
T ss_pred ccccCCcccccccccHHHHHHHHhHHHhcccCCCCcchHHHHHHHHHHHHhh----CCHHHHHHHHHHHHHHhCCCCcch
Confidence 21 11 111 145666643222223 46667887788887555543 445677789999999999999999
Q ss_pred HHHHHHHH
Q 001448 249 RDAFAEAL 256 (1075)
Q Consensus 249 R~a~A~~L 256 (1075)
+..+|.|+
T Consensus 363 ~tyAA~~i 370 (370)
T PF08506_consen 363 HTYAAIAI 370 (370)
T ss_dssp HHHHHHHH
T ss_pred hhhhhhhC
Confidence 99999875
No 68
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=86.48 E-value=1.2 Score=33.06 Aligned_cols=29 Identities=28% Similarity=0.370 Sum_probs=26.1
Q ss_pred HHHHHHHhhcCCChhHHHHHHHHHHHHHc
Q 001448 993 HVQTLLSTLSSRQPILRHLAVSTLRHLIE 1021 (1075)
Q Consensus 993 lV~~L~~~L~S~~~~Lr~aav~cLrqL~q 1021 (1075)
++|.+...+.++++..|.+|+.||.+++|
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 57899999999999999999999999986
No 69
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=86.18 E-value=21 Score=40.62 Aligned_cols=122 Identities=20% Similarity=0.132 Sum_probs=84.4
Q ss_pred HHHHHHhhc---CCChhHhHHHHHHHHHHhccCCchhhHHhHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHhhHhhc
Q 001448 67 DALYSLLIL---GARRPVRHLASVAMGRIISKGDNISVYSRVSSLQGFLSDGKKSEPQKVAGAAQCLGELYRQFGRRITS 143 (1075)
Q Consensus 67 ~~L~~ll~~---~~g~P~R~l~a~cl~~ly~~GD~~~lf~~vn~l~~~l~~~k~~s~~~~~aA~~cLG~l~~~~G~~l~s 143 (1075)
+-+.++|.+ ++-+++|+..=+||+- |.-=|...--+.+.-+...++ ++++..+..|+.++.++.-.||.....
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl-~~Lld~~~a~~~l~l~~~~~~---~~~~~v~~~al~~l~Dll~~~g~~~~~ 101 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGL-CCLLDKELAKEHLPLFLQALQ---KDDEEVKITALKALFDLLLTHGIDIFD 101 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHH-HHHhChHHHHHHHHHHHHHHH---hCCHHHHHHHHHHHHHHHHHcCchhcc
Confidence 344455544 4667999999999874 333344444444444555554 336667778999999999999976665
Q ss_pred CHH---------HHHHHHHHHhccCcHHHHHHHHHHHHHHHhcCCCCCc-hhHHHHHHHH
Q 001448 144 GLL---------ETTIIAAKLMKFNEEFVRQEALLLLQNALEGSGGSAA-ASAYSEAFRL 193 (1075)
Q Consensus 144 ~~~---------e~~~~llK~lK~~~~~~R~~~l~~L~kil~g~g~~~~-~~~~~di~K~ 193 (1075)
... .+...+.+.+++.++.+|..+...+.|.+- .|.-.+ +.+.+.+...
T Consensus 102 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL-~~~i~~~~~vL~~Lll~ 160 (298)
T PF12719_consen 102 SESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLL-SGRISDPPKVLSRLLLL 160 (298)
T ss_pred chhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh-cCCCCcHHHHHHHHHHH
Confidence 555 477888888888888899999999999887 454344 4555555443
No 70
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=85.65 E-value=25 Score=39.41 Aligned_cols=88 Identities=22% Similarity=0.072 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHHHhhcCCChhHhHHHHHHHHH---------HhccCCchhhHHhHHHHHHhhhcCCCCChhhHHHHHH
Q 001448 58 ILLWQRKCEDALYSLLILGARRPVRHLASVAMGR---------IISKGDNISVYSRVSSLQGFLSDGKKSEPQKVAGAAQ 128 (1075)
Q Consensus 58 i~~~Q~~l~~~L~~ll~~~~g~P~R~l~a~cl~~---------ly~~GD~~~lf~~vn~l~~~l~~~k~~s~~~~~aA~~ 128 (1075)
.+..|++--.+||++=+.+-+.+ .+-+.+++.. .|..|+..-- +.|+.+.+.+. ..+..|..||-|..
T Consensus 15 ~s~~l~~r~rALf~Lr~l~~~~~-i~~i~ka~~d~s~llkhe~ay~LgQ~~~~-~Av~~l~~vl~-desq~pmvRhEAae 91 (289)
T KOG0567|consen 15 KSQPLQNRFRALFNLRNLLGPAA-IKAITKAFIDDSALLKHELAYVLGQMQDE-DAVPVLVEVLL-DESQEPMVRHEAAE 91 (289)
T ss_pred ccHHHHHHHHHHHhhhccCChHH-HHHHHHhcccchhhhccchhhhhhhhccc-hhhHHHHHHhc-ccccchHHHHHHHH
Confidence 56667777788887766554444 5555555432 2334443322 35777777776 33446889999999
Q ss_pred HHHHHHHHHhhHhhcCHHHHHHHHHHHhcc
Q 001448 129 CLGELYRQFGRRITSGLLETTIIAAKLMKF 158 (1075)
Q Consensus 129 cLG~l~~~~G~~l~s~~~e~~~~llK~lK~ 158 (1075)
|||++. .++...++-|+.|.
T Consensus 92 alga~~----------~~~~~~~l~k~~~d 111 (289)
T KOG0567|consen 92 ALGAIG----------DPESLEILTKYIKD 111 (289)
T ss_pred HHHhhc----------chhhHHHHHHHhcC
Confidence 999542 56666667776643
No 71
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.57 E-value=15 Score=45.80 Aligned_cols=215 Identities=20% Similarity=0.153 Sum_probs=138.2
Q ss_pred hhHHHHHHHHHHHhccCChhhHHHHHHHH-----------------------HHHHHHHhh----cCCChhH----hHHH
Q 001448 37 LLCFDLLSDLISAIDEEPKESILLWQRKC-----------------------EDALYSLLI----LGARRPV----RHLA 85 (1075)
Q Consensus 37 ~~~~~wL~~L~~~l~~~~k~di~~~Q~~l-----------------------~~~L~~ll~----~~~g~P~----R~l~ 85 (1075)
.++|-|-..+-+.+...-|..+-.-|+.+ |+-..+.+. ..|+.|+ |+.+
T Consensus 75 s~~f~~~~~~~k~il~~~k~q~~~l~ks~~~~~geI~frAWkea~~dL~eeiE~d~iq~~~~haiha~rsp~~sk~r~Vl 154 (1005)
T KOG1949|consen 75 SCLFNWNINFIKMILGTIKNQLQGLQKSLMVYIGEIYFRAWKEASGDLLEEIENDCIQDFMFHAIHAPRSPVHSKVREVL 154 (1005)
T ss_pred HHHhhHHHHHHHHHHHHHHHHhhcccHHHHHHHhHHHHHHHHHhccchHHHHhhhHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 46778888777776666555544444321 111111111 2355576 5555
Q ss_pred HHHHHHH-hccCCchhhHHhHHHHHHhhhcCCCC-ChhhHHHHHHHHHHHH---------HHHhhHhhcCHHHHHHHHHH
Q 001448 86 SVAMGRI-ISKGDNISVYSRVSSLQGFLSDGKKS-EPQKVAGAAQCLGELY---------RQFGRRITSGLLETTIIAAK 154 (1075)
Q Consensus 86 a~cl~~l-y~~GD~~~lf~~vn~l~~~l~~~k~~-s~~~~~aA~~cLG~l~---------~~~G~~l~s~~~e~~~~llK 154 (1075)
|--..+= -+.|=-..||.- .+.+|=++=+. .-..+..|++.+-+.| +.+.+.+-.+|.+ +.+
T Consensus 155 ~~F~hqkk~~qgVeeml~rL---~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~----l~~ 227 (1005)
T KOG1949|consen 155 SYFHHQKKVRQGVEEMLYRL---YKPILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEE----LYS 227 (1005)
T ss_pred HHHHHHHHHhhhHHHHHHHH---HhHHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHH----HHH
Confidence 4332222 233444445552 23333222121 1235567888888888 4444444455554 677
Q ss_pred HhccCcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhcCCCcccchhhhHh
Q 001448 155 LMKFNEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGGPCLGVGELDNSA 234 (1075)
Q Consensus 155 ~lK~~~~~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~~~~~~~~dlE~l~ 234 (1075)
++..--.-+|.++...+.|+..--=--+++++.+|+.|.+......|.+..||++..+|+..+... | ...+-||.+.
T Consensus 228 LL~d~~p~VRS~a~~gv~k~~s~fWe~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~n--p-~sh~~le~~L 304 (1005)
T KOG1949|consen 228 LLEDPYPMVRSTAILGVCKITSKFWEMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDN--P-LSHPLLEQLL 304 (1005)
T ss_pred HhcCCCchHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcC--c-cchhHHHHHH
Confidence 777766789999999999987655545567899999998888888899999999999999888774 2 2345667777
Q ss_pred hHHhhhccCCChhHHHHHHHHHHHHHH
Q 001448 235 THCVKAIEDPIASVRDAFAEALGSLLA 261 (1075)
Q Consensus 235 sl~~K~le~s~~~vR~a~A~~La~lLa 261 (1075)
...=-++.+.+..||-|+-..|-.+=+
T Consensus 305 pal~~~l~D~se~VRvA~vd~ll~ik~ 331 (1005)
T KOG1949|consen 305 PALRYSLHDNSEKVRVAFVDMLLKIKA 331 (1005)
T ss_pred HhcchhhhccchhHHHHHHHHHHHHHh
Confidence 666667888999999999998877653
No 72
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.16 E-value=20 Score=44.56 Aligned_cols=61 Identities=28% Similarity=0.276 Sum_probs=36.6
Q ss_pred HhccCcchHHHHHHHHHHHHHHhhcCCCcccchhhhHhhHHhhhccCCChhHHHHHHHHHHHHHHh
Q 001448 197 FAIVDKSFVVRIAGARCLKAFAHIGGPCLGVGELDNSATHCVKAIEDPIASVRDAFAEALGSLLAL 262 (1075)
Q Consensus 197 ~~~~Dks~~Vr~aAa~cL~~l~~~~~~~~~~~dlE~l~sl~~K~le~s~~~vR~a~A~~La~lLa~ 262 (1075)
+++.|.-+.||.||..-+-.|+.+. |-|-..-+| +..-.|.+....||.-+-..|-.+...
T Consensus 380 hGlEDEf~EVR~AAV~Sl~~La~ss-P~FA~~ald----fLvDMfNDE~~~VRL~ai~aL~~Is~~ 440 (823)
T KOG2259|consen 380 HGLEDEFYEVRRAAVASLCSLATSS-PGFAVRALD----FLVDMFNDEIEVVRLKAIFALTMISVH 440 (823)
T ss_pred eechHHHHHHHHHHHHHHHHHHcCC-CCcHHHHHH----HHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 4567888899999988888888864 444322222 333344555555665555555544443
No 73
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=85.04 E-value=1.1e+02 Score=37.89 Aligned_cols=350 Identities=13% Similarity=0.066 Sum_probs=177.5
Q ss_pred HHhHHHHHHhhhc-CC---CCChhhHHHHHHHHHHHHHHHhhHhhcCHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhc
Q 001448 102 YSRVSSLQGFLSD-GK---KSEPQKVAGAAQCLGELYRQFGRRITSGLLETTIIAAKLMKFNEEFVRQEALLLLQNALEG 177 (1075)
Q Consensus 102 f~~vn~l~~~l~~-~k---~~s~~~~~aA~~cLG~l~~~~G~~l~s~~~e~~~~llK~lK~~~~~~R~~~l~~L~kil~g 177 (1075)
-|.+-.+..+|-. +. +|+=..-.||-+||--.-+.-|+.+++. ....+=.++++-.-.-|-.+.-+++.|..|
T Consensus 320 ~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd~i~~p---Vl~FvEqni~~~~w~nreaavmAfGSvm~g 396 (858)
T COG5215 320 ADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGDKIMRP---VLGFVEQNIRSESWANREAAVMAFGSVMHG 396 (858)
T ss_pred HHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhhHhHHH---HHHHHHHhccCchhhhHHHHHHHhhhhhcC
Confidence 3455566666652 21 2221223479999954445668888655 444455566664455688888899999987
Q ss_pred CCCCCchhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhcCCCcccchhhhHhhHHhhhccCCChhHHHHHHHHHH
Q 001448 178 SGGSAAASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGGPCLGVGELDNSATHCVKAIEDPIASVRDAFAEALG 257 (1075)
Q Consensus 178 ~g~~~~~~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~~~~~~~~dlE~l~sl~~K~le~s~~~vR~a~A~~La 257 (1075)
=-...-..+.-+..+- .-..++|.+.-|.--++.|+.++..+-+-.++... ++.-..-|.+-|--+.-|++++-+..
T Consensus 397 p~~~~lT~~V~qalp~-i~n~m~D~~l~vk~ttAwc~g~iad~va~~i~p~~--Hl~~~vsa~liGl~D~p~~~~ncsw~ 473 (858)
T COG5215 397 PCEDCLTKIVPQALPG-IENEMSDSCLWVKSTTAWCFGAIADHVAMIISPCG--HLVLEVSASLIGLMDCPFRSINCSWR 473 (858)
T ss_pred ccHHHHHhhHHhhhHH-HHHhcccceeehhhHHHHHHHHHHHHHHHhcCccc--cccHHHHHHHhhhhccchHHhhhHHH
Confidence 5543334556666674 44457899999999999999999886422222111 12222222233333334555555554
Q ss_pred HHHHhccCCCCcCCCCCCCCCCCCCCh-hHHHHHHhhhhhcccCCCCcchhHHHHHHHHHHHHHHhcccccCCCcchhHH
Q 001448 258 SLLALGMNPQAQVQPKGKGPFPPAKKL-EGGLQRHLALPFTRANGAKSKNMRVNLTLSWVYFLQAIRLKYFHPDSELQDY 336 (1075)
Q Consensus 258 ~lLa~~~~~~~~~~~~~k~~~~~~k~l-~~~l~~~Ls~~f~k~~~~~~r~~R~Gv~~ayv~fl~~lg~~wle~~~~~~~~ 336 (1075)
-.-.-.+.+++.. .......++ ++.+. -|..+=-+.. .-...|+..+.+...++.--.-...+ ...+|
T Consensus 474 ~~nlv~h~a~a~~-----~~~S~l~~fY~ai~~-~Lv~~t~~~~--Ne~n~R~s~fsaLgtli~~~~d~V~~---~~a~~ 542 (858)
T COG5215 474 KENLVDHIAKAVR-----EVESFLAKFYLAILN-ALVKGTELAL--NESNLRVSLFSALGTLILICPDAVSD---ILAGF 542 (858)
T ss_pred HHhHHHhhhhhhc-----cccchhHHHHHHHHH-HHHHHHHhhc--cchhHHHHHHHHHHHHHhhcchhHHH---HHHHH
Confidence 4433333333110 011111122 33333 1221111111 14567777777777666553211110 01123
Q ss_pred HHHHHHHhccCCCCC--------HH----HHHHHHHHHHHhhhccCC--hHHH---HHHHHHHHhh--------------
Q 001448 337 ALQVMDMLRADIFVD--------SH----ALACVLYILRIGVTDQMT--EPTQ---RSFLVFLGKQ-------------- 385 (1075)
Q Consensus 337 ~~~i~~ll~~~~~~~--------~~----~r~~v~~ILr~~v~~~L~--E~~Q---~~~~~~l~~~-------------- 385 (1075)
.+.+++-+.....++ .. -+.=.--+|..+|+..=. |..- .++...+...
T Consensus 543 ~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~ie~v~D~lm~Lf~r~les~~~t~~~~dV~~aI 622 (858)
T COG5215 543 YDYTSKKLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRRDIEDVEDQLMELFIRILESTKPTTAFGDVYTAI 622 (858)
T ss_pred HHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHhccCCchhhhHHHHHH
Confidence 333332222100000 00 011122222334432222 2222 2222222211
Q ss_pred ----------cc----c------CC---CChhHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHhcCCChH--HHHHH
Q 001448 386 ----------LQ----A------VD---ASPFMKIAALRTLSYTLKTLGEVPSEFKEVLDSTVVAAVSHSSQL--VRIEA 440 (1075)
Q Consensus 386 ----------~~----~------~~---~s~~~lv~aL~el~~Ll~~LGsa~~~~~~~l~d~L~~lL~hps~s--vRi~A 440 (1075)
.+ + .+ ..-.++.++...++.|-..||+-+....+.+...|.+.|++|... +.=+-
T Consensus 623 sal~~sl~e~Fe~y~~~fiPyl~~aln~~d~~v~~~avglvgdlantl~~df~~y~d~~ms~LvQ~lss~~~~R~lKPai 702 (858)
T COG5215 623 SALSTSLEERFEQYASKFIPYLTRALNCTDRFVLNSAVGLVGDLANTLGTDFNIYADVLMSSLVQCLSSEATHRDLKPAI 702 (858)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcChhhccccchHH
Confidence 11 0 00 012467889999999999999999999999999999999988653 33333
Q ss_pred HHHHHHHHHhCCcchhhHHHHHHHHHHh
Q 001448 441 ALTLRALAEVDPTCVSGLITYGVTTLNA 468 (1075)
Q Consensus 441 A~cLr~~~~a~Ps~l~~ll~~~~~~L~~ 468 (1075)
-.|+--++.+.-.-..+-|+..+-.+.+
T Consensus 703 LSvFgDIAlaiga~F~~YL~~im~L~qq 730 (858)
T COG5215 703 LSVFGDIALAIGANFESYLDMIMMLFQQ 730 (858)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 3444455555555555555555444433
No 74
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=84.52 E-value=20 Score=46.24 Aligned_cols=94 Identities=18% Similarity=0.239 Sum_probs=67.7
Q ss_pred hcCHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhcCCCCC-chhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhh
Q 001448 142 TSGLLETTIIAAKLMKFNEEFVRQEALLLLQNALEGSGGSA-AASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHI 220 (1075)
Q Consensus 142 ~s~~~e~~~~llK~lK~~~~~~R~~~l~~L~kil~g~g~~~-~~~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~ 220 (1075)
+.-.......++-.+|.-.++.|.+....|.+-++..|... .....++.-+...++ .+|++-+||-||.+|+..+.+.
T Consensus 366 s~~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~-~~D~~~~VR~Aa~e~~~~v~k~ 444 (815)
T KOG1820|consen 366 STPLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKH-INDTDKDVRKAALEAVAAVMKV 444 (815)
T ss_pred cccHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhh-ccCCcHHHHHHHHHHHHHHHHH
Confidence 44455556666677787789999999999999999999533 223344444544444 6899999999999999999997
Q ss_pred cCCCcccchhhhHhhHHhhhccCC
Q 001448 221 GGPCLGVGELDNSATHCVKAIEDP 244 (1075)
Q Consensus 221 ~~~~~~~~dlE~l~sl~~K~le~s 244 (1075)
.+ |......++-+++.
T Consensus 445 ~G--------e~~~~k~L~~~~~~ 460 (815)
T KOG1820|consen 445 HG--------EEVFKKLLKDLDKQ 460 (815)
T ss_pred hh--------HHHHHHHHHhhccc
Confidence 42 35555555555554
No 75
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=84.45 E-value=1.2e+02 Score=37.79 Aligned_cols=364 Identities=13% Similarity=0.099 Sum_probs=172.8
Q ss_pred HHHHHHHHhhcCCChhHhHHHHHHHHHHhcc--CCchhhHHhHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHhhHhh
Q 001448 65 CEDALYSLLILGARRPVRHLASVAMGRIISK--GDNISVYSRVSSLQGFLSDGKKSEPQKVAGAAQCLGELYRQFGRRIT 142 (1075)
Q Consensus 65 l~~~L~~ll~~~~g~P~R~l~a~cl~~ly~~--GD~~~lf~~vn~l~~~l~~~k~~s~~~~~aA~~cLG~l~~~~G~~l~ 142 (1075)
+.+.++++++ .+-.-.|+-++.-++-+... +...-=|.-+..+...++ +|+...... ++.-+.-..++.+|...-
T Consensus 135 ~l~~l~~ll~-~~~~~~~~~aa~~~ag~v~g~~i~~~~~~~~l~~l~~ai~-dk~~~~~re-~~~~a~~~~~~~Lg~~~E 211 (569)
T KOG1242|consen 135 VLELLLELLT-STKIAERAGAAYGLAGLVNGLGIESLKEFGFLDNLSKAII-DKKSALNRE-AALLAFEAAQGNLGPPFE 211 (569)
T ss_pred HHHHHHHHhc-cccHHHHhhhhHHHHHHHcCcHHhhhhhhhHHHHHHHHhc-ccchhhcHH-HHHHHHHHHHHhcCCCCC
Confidence 3444555555 55555677777777776653 333333444556677665 444333343 677777777777776555
Q ss_pred cCHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhcCCCCC----------------------------------c---hh
Q 001448 143 SGLLETTIIAAKLMKFNEEFVRQEALLLLQNALEGSGGSA----------------------------------A---AS 185 (1075)
Q Consensus 143 s~~~e~~~~llK~lK~~~~~~R~~~l~~L~kil~g~g~~~----------------------------------~---~~ 185 (1075)
--...++..++..+-.....+|.++..+...+.+-...-+ + +.
T Consensus 212 Pyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~ 291 (569)
T KOG1242|consen 212 PYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSL 291 (569)
T ss_pred chHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHH
Confidence 5555556666666544455566666666655555433211 0 12
Q ss_pred HHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhcCCCcccchhhhHhhHHhhhccCCChhHHHHHHHHHHHHHHhccC
Q 001448 186 AYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGGPCLGVGELDNSATHCVKAIEDPIASVRDAFAEALGSLLALGMN 265 (1075)
Q Consensus 186 ~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~~~~~~~~dlE~l~sl~~K~le~s~~~vR~a~A~~La~lLa~~~~ 265 (1075)
+..++.+. ....++|.-..||.++.+|+..+.. .+-..|++.+....+.++.+++..|..+.=.+.+.-.+....
T Consensus 292 ~lp~iiP~-lsevl~DT~~evr~a~~~~l~~~~s----vidN~dI~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V~ 366 (569)
T KOG1242|consen 292 CLPDLIPV-LSEVLWDTKPEVRKAGIETLLKFGS----VIDNPDIQKIIPTLLDALADPSCYTPECLDSLGATTFVAEVD 366 (569)
T ss_pred HHhHhhHH-HHHHHccCCHHHHHHHHHHHHHHHH----hhccHHHHHHHHHHHHHhcCcccchHHHHHhhcceeeeeeec
Confidence 23333331 2223566666677777777655543 233456666666666666666655554432222221111111
Q ss_pred CCCcCCCCCCCCCCCCCChhHHHHHHhhhhhcccCCCCcchhHHHHHHHHHHHHHHh-cccccCCCcchhHHHHHHHHHh
Q 001448 266 PQAQVQPKGKGPFPPAKKLEGGLQRHLALPFTRANGAKSKNMRVNLTLSWVYFLQAI-RLKYFHPDSELQDYALQVMDML 344 (1075)
Q Consensus 266 ~~~~~~~~~k~~~~~~k~l~~~l~~~Ls~~f~k~~~~~~r~~R~Gv~~ayv~fl~~l-g~~wle~~~~~~~~~~~i~~ll 344 (1075)
++ ++.=.+- +|..++-..+++ .++--+-|+ -.+-... ++.|+ ..|+..++.-+
T Consensus 367 ~p---------------sLalmvp-iL~R~l~eRst~-~kr~t~~Ii---dNm~~LveDp~~l------apfl~~Llp~l 420 (569)
T KOG1242|consen 367 AP---------------SLALMVP-ILKRGLAERSTS-IKRKTAIII---DNMCKLVEDPKDL------APFLPSLLPGL 420 (569)
T ss_pred ch---------------hHHHHHH-HHHHHHhhccch-hhhhHHHHH---HHHHHhhcCHHHH------hhhHHHHhhHH
Confidence 10 2332222 555666555432 232222222 2222223 44554 44776655544
Q ss_pred ccCC-CCCHHHHHHHHHHHHHhhhccCChHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Q 001448 345 RADI-FVDSHALACVLYILRIGVTDQMTEPTQRSFLVFLGKQLQAVDASPFMKIAALRTLSYTLKTLGEVPSEFKEVLDS 423 (1075)
Q Consensus 345 ~~~~-~~~~~~r~~v~~ILr~~v~~~L~E~~Q~~~~~~l~~~~~~~~~s~~~lv~aL~el~~Ll~~LGsa~~~~~~~l~d 423 (1075)
.... ...|..|.-..+-|-.++ +.+||.+-....-++..-. +.+-+.+.-..+.+-++..+..+|.. ..+.+.-
T Consensus 421 k~~~~d~~PEvR~vaarAL~~l~-e~~g~~~f~d~~p~l~e~~-~~~k~~~~~~g~aq~l~evl~~~~v~---~~~~~~~ 495 (569)
T KOG1242|consen 421 KENLDDAVPEVRAVAARALGALL-ERLGEVSFDDLIPELSETL-TSEKSLVDRSGAAQDLSEVLAGLGVE---KVEDILP 495 (569)
T ss_pred HHHhcCCChhHHHHHHHHHHHHH-HHHHhhcccccccHHHHhh-ccchhhhhhHHHhhhHHHHHhcccch---HHHHHHH
Confidence 4211 125666654444443333 2445554321111111100 11112223344555555555555543 3344444
Q ss_pred HHHHHhcCCChH--HHHHHHHHHHHHHHhCCc----chhhHHHHHHHHHH
Q 001448 424 TVVAAVSHSSQL--VRIEAALTLRALAEVDPT----CVSGLITYGVTTLN 467 (1075)
Q Consensus 424 ~L~~lL~hps~s--vRi~AA~cLr~~~~a~Ps----~l~~ll~~~~~~L~ 467 (1075)
.++....+.... +|--=.|-+.-.-...+. ++.+.++.....+.
T Consensus 496 ~~~a~~~~~~~~~~~~dg~~~~~~~lp~~~~~~~~~yi~~i~~~~~k~~a 545 (569)
T KOG1242|consen 496 EILANASSVLIDERIRDGVIWLFYLLPYIFGFQFQPYIHEILDEFLKGLA 545 (569)
T ss_pred HHHHHHhhccchhhhccCeeehhhccchhhhHHhHHHHHHHHHHHHHHhh
Confidence 455555555544 444445555443333444 44445555544444
No 76
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=84.33 E-value=20 Score=46.51 Aligned_cols=210 Identities=19% Similarity=0.162 Sum_probs=125.4
Q ss_pred cchhHHHHHHHHhhhccCCCCchhHHHHHHHHHHHhccCChhhHHHHHHHHHHH-----HHHHhhcC-CChhH-hHHHHH
Q 001448 15 FGVLVAQLESIVASASQQSPDPLLCFDLLSDLISAIDEEPKESILLWQRKCEDA-----LYSLLILG-ARRPV-RHLASV 87 (1075)
Q Consensus 15 ~~~~~a~le~~~~~~~~~~~~~~~~~~wL~~L~~~l~~~~k~di~~~Q~~l~~~-----L~~ll~~~-~g~P~-R~l~a~ 87 (1075)
-||++-=|-++--+++ .-||+++|=|-+= .+.| +.||-.|+++ ..+++..+ .=||- |-+.|=
T Consensus 511 VGIFPYVLKLLQS~a~--ELrpiLVFIWAKI-----LAvD----~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAF 579 (1387)
T KOG1517|consen 511 VGIFPYVLKLLQSSAR--ELRPILVFIWAKI-----LAVD----PSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAF 579 (1387)
T ss_pred cchHHHHHHHhccchH--hhhhhHHHHHHHH-----HhcC----chhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHH
Confidence 4555555555544443 4589999999765 3444 6789888887 34445553 33445 555555
Q ss_pred HHHHHhc---cCCchhh-HHhHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHhhHhhcCH-HHHHHHHHHHhccCcHH
Q 001448 88 AMGRIIS---KGDNISV-YSRVSSLQGFLSDGKKSEPQKVAGAAQCLGELYRQFGRRITSGL-LETTIIAAKLMKFNEEF 162 (1075)
Q Consensus 88 cl~~ly~---~GD~~~l-f~~vn~l~~~l~~~k~~s~~~~~aA~~cLG~l~~~~G~~l~s~~-~e~~~~llK~lK~~~~~ 162 (1075)
.|+.+-+ .|-.--+ =.-++-|...++++ ..|--|--.+-|||.+++-|-.-=-+.. ....-.+.+.++.+-+.
T Consensus 580 VLAviv~nf~lGQ~acl~~~li~iCle~lnd~--~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpE 657 (1387)
T KOG1517|consen 580 VLAVIVRNFKLGQKACLNGNLIGICLEHLNDD--PEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPE 657 (1387)
T ss_pred HHHHHHcccchhHHHhccccHHHHHHHHhcCC--ccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHH
Confidence 5554432 2222111 12466788888732 1455566789999999998753222222 22344566677777889
Q ss_pred HHHHHHHHHHHHHhcCCCCCchh--HHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhcCCCcccchhhhHhhHHhhh
Q 001448 163 VRQEALLLLQNALEGSGGSAAAS--AYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGGPCLGVGELDNSATHCVKA 240 (1075)
Q Consensus 163 ~R~~~l~~L~kil~g~g~~~~~~--~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~~~~~~~~dlE~l~sl~~K~ 240 (1075)
+|+++.-+|+-.+.+...--++. ..-+++- +.|+...+--..++|+..++. .
T Consensus 658 VRaAAVFALgtfl~~~~d~fde~~~~~~~~~~------l~~~~~~~E~~i~~~~~~ll~--------------------~ 711 (1387)
T KOG1517|consen 658 VRAAAVFALGTFLSNGSDNFDEQTLVVEEEID------LDDERTSIEDLIIKGLMSLLA--------------------L 711 (1387)
T ss_pred HHHHHHHHHHHHhcccccccchhhhhhhhhhc------chhhhhhHHHHHHhhHHHHHH--------------------H
Confidence 99999999999888643312221 1111111 455666666666666644443 2
Q ss_pred ccCCChhHHHHHHHHHHHHHHhc
Q 001448 241 IEDPIASVRDAFAEALGSLLALG 263 (1075)
Q Consensus 241 le~s~~~vR~a~A~~La~lLa~~ 263 (1075)
+.+.+.-||..++-.|+++....
T Consensus 712 vsdgsplvr~ev~v~ls~~~~g~ 734 (1387)
T KOG1517|consen 712 VSDGSPLVRTEVVVALSHFVVGY 734 (1387)
T ss_pred HhccchHHHHHHHHHHHHHHHhh
Confidence 33456678888888888887543
No 77
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=84.30 E-value=32 Score=43.13 Aligned_cols=103 Identities=16% Similarity=0.058 Sum_probs=72.1
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhcCCCccc
Q 001448 148 TTIIAAKLMKFNEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGGPCLGV 227 (1075)
Q Consensus 148 ~~~~llK~lK~~~~~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~~~~~~~ 227 (1075)
++..++|...++.-.+|.-.++.+++++...+. .|+.++-.+.+. +..=+-||...||.-|..||..+.... ..
T Consensus 86 ~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~e-idd~vfn~l~e~-l~~Rl~Drep~VRiqAv~aLsrlQ~d~----~d 159 (892)
T KOG2025|consen 86 TFYHLLRGTESKDKKVRFRVLQILALLSDENAE-IDDDVFNKLNEK-LLIRLKDREPNVRIQAVLALSRLQGDP----KD 159 (892)
T ss_pred HHHHHHhcccCcchhHHHHHHHHHHHHhccccc-cCHHHHHHHHHH-HHHHHhccCchHHHHHHHHHHHHhcCC----CC
Confidence 344444444446678999999999999886664 667788777773 445578999999999999998887421 22
Q ss_pred chhhhHhhHHhhhccCCChhHHHHHHHHH
Q 001448 228 GELDNSATHCVKAIEDPIASVRDAFAEAL 256 (1075)
Q Consensus 228 ~dlE~l~sl~~K~le~s~~~vR~a~A~~L 256 (1075)
.+++-.-.+.+=.=.+|+++||+++=.++
T Consensus 160 ee~~v~n~l~~liqnDpS~EVRRaaLsnI 188 (892)
T KOG2025|consen 160 EECPVVNLLKDLIQNDPSDEVRRAALSNI 188 (892)
T ss_pred CcccHHHHHHHHHhcCCcHHHHHHHHHhh
Confidence 33444444444445679999999875554
No 78
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=84.29 E-value=25 Score=40.87 Aligned_cols=85 Identities=16% Similarity=0.108 Sum_probs=69.9
Q ss_pred cCCCChhHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHhCCcchhhHHHHHHHHHH
Q 001448 388 AVDASPFMKIAALRTLSYTLKTLGEVPSEFKEVLDSTVVAAVSHSSQLVRIEAALTLRALAEVDPTCVSGLITYGVTTLN 467 (1075)
Q Consensus 388 ~~~~s~~~lv~aL~el~~Ll~~LGsa~~~~~~~l~d~L~~lL~hps~svRi~AA~cLr~~~~a~Ps~l~~ll~~~~~~L~ 467 (1075)
..+.+.-....+|+++-.+++++-.+-.-+.-+-..+++..+.|+...+|-.|||.+-+.+.++|..-.++++.- .+.
T Consensus 92 ~~s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~--~L~ 169 (342)
T KOG2160|consen 92 SSSVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELG--ALS 169 (342)
T ss_pred cccCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcc--cHH
Confidence 344456778999999999999999998877777777888899999999999999999999999998888887643 555
Q ss_pred hhhhhcc
Q 001448 468 ALRENVS 474 (1075)
Q Consensus 468 ~~~~~l~ 474 (1075)
++...++
T Consensus 170 ~Ll~~ls 176 (342)
T KOG2160|consen 170 KLLKILS 176 (342)
T ss_pred HHHHHHc
Confidence 5554443
No 79
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=83.44 E-value=1.9 Score=33.86 Aligned_cols=29 Identities=28% Similarity=0.140 Sum_probs=27.0
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 001448 420 VLDSTVVAAVSHSSQLVRIEAALTLRALA 448 (1075)
Q Consensus 420 ~l~d~L~~lL~hps~svRi~AA~cLr~~~ 448 (1075)
+....|+++|.|++..||-+|+|+|+.++
T Consensus 12 g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 12 GGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp THHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 57889999999999999999999999886
No 80
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=83.00 E-value=21 Score=43.05 Aligned_cols=257 Identities=16% Similarity=0.177 Sum_probs=146.0
Q ss_pred ccCChhhHHHHHHHHHHHHHHHhhcCCChhHhHHHHHHHHHHhcc-CCc-hhh-HHhHHHHHHhhhc-CC-CCChhhHHH
Q 001448 51 DEEPKESILLWQRKCEDALYSLLILGARRPVRHLASVAMGRIISK-GDN-ISV-YSRVSSLQGFLSD-GK-KSEPQKVAG 125 (1075)
Q Consensus 51 ~~~~k~di~~~Q~~l~~~L~~ll~~~~g~P~R~l~a~cl~~ly~~-GD~-~~l-f~~vn~l~~~l~~-~k-~~s~~~~~a 125 (1075)
+..+|+|+..+.+.+-+.|++++..... ..=.-+-||+-+++.. +|. .+. -..++.+..+++. .| .+.|..-|-
T Consensus 13 ~~~~~~di~p~~~~ll~~Lf~~i~~~~s-~ENeylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNPsnP~FnHy 91 (435)
T PF03378_consen 13 PRFSKADIQPFAQQLLQNLFALIEKPGS-AENEYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNPSNPRFNHY 91 (435)
T ss_dssp BSS-GGGTTCCHHHHHHHHHHHHHTT-S-TC-HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS---HHHHHH
T ss_pred eeECHHHhhhhHHHHHHHHHHHHhcCCC-ccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhh
Confidence 4578999999999999999999976433 3344488898888876 332 333 3444566666651 23 445666677
Q ss_pred HHHHHHHHHHHHhh---HhhcCHHHH-HHHHHHHhccCcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhccC
Q 001448 126 AAQCLGELYRQFGR---RITSGLLET-TIIAAKLMKFNEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVD 201 (1075)
Q Consensus 126 A~~cLG~l~~~~G~---~l~s~~~e~-~~~llK~lK~~~~~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~D 201 (1075)
..+++|.+.+.... ...+.+++. ...+...+.+.=...--.+|+.|+-+++.-.++.-+..++.+|.....-.+=+
T Consensus 92 lFEsi~~lir~~~~~~~~~v~~~E~~L~P~f~~ILq~dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~lWe 171 (435)
T PF03378_consen 92 LFESIGALIRFVCEADPEAVSQFEEALFPPFQEILQQDVQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPALWE 171 (435)
T ss_dssp HHHHHHHHHHHS-GGGHH---HHHHHHHHHHHHHHHTT-TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGGGG
T ss_pred HHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcchhc
Confidence 77888888775442 222233333 33344444443233556789999999997662333356888888655555555
Q ss_pred cchHHHHHHHHHHHHHHhhcCCCc-ccchhhhHhhHHhhhccCCChhHHHHHHHHHHHHHHhccCCCCcCCCCCCCCCCC
Q 001448 202 KSFVVRIAGARCLKAFAHIGGPCL-GVGELDNSATHCVKAIEDPIASVRDAFAEALGSLLALGMNPQAQVQPKGKGPFPP 280 (1075)
Q Consensus 202 ks~~Vr~aAa~cL~~l~~~~~~~~-~~~dlE~l~sl~~K~le~s~~~vR~a~A~~La~lLa~~~~~~~~~~~~~k~~~~~ 280 (1075)
+.-.| =|..+.|.++.+.++.++ ..+.++.+..++=|.+.+...+ +..-++|-.++ ... |..
T Consensus 172 ~~gni-PalvrLL~a~i~k~~~~i~~~~~l~~iLgvFQkLi~sk~~D--~~gF~LL~~iv-~~~-p~~------------ 234 (435)
T PF03378_consen 172 RRGNI-PALVRLLQAYIKKDPSFIVANNQLEPILGVFQKLIASKAND--HYGFDLLESIV-ENL-PPE------------ 234 (435)
T ss_dssp STTTH-HHHHHHHHHHHHHHGGG----S-CHHHHHHHHHHHT-TTCH--HHHHHHHHHHH-HHS--HH------------
T ss_pred cCCCc-CcHHHHHHHHHHhCchhhcchhhHHHHHHHHHHHHCCCCcc--hHHHHHHHHHH-HHC-CHH------------
Confidence 56666 566788999888765666 5678899999999999886644 33446666666 322 210
Q ss_pred CCChhHHHHHHhhhhhcccCCCCcchhHHHHHHHHHHHHHHhccccc
Q 001448 281 AKKLEGGLQRHLALPFTRANGAKSKNMRVNLTLSWVYFLQAIRLKYF 327 (1075)
Q Consensus 281 ~k~l~~~l~~~Ls~~f~k~~~~~~r~~R~Gv~~ayv~fl~~lg~~wl 327 (1075)
.++.-+..++..-|.|-+++.+.+.+-.+...+..|....|+.++
T Consensus 235 --~l~~yl~~I~~lll~RLq~skT~kf~~~fv~F~~~~~~~~g~~~l 279 (435)
T PF03378_consen 235 --ALEPYLKQIFTLLLTRLQSSKTEKFVKRFVVFLSLFAIKYGPDFL 279 (435)
T ss_dssp --HHGGGHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHH-HHHH
T ss_pred --HHHHHHHHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHcCHHHH
Confidence 233333323334444444323445554555555555555564443
No 81
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=82.20 E-value=2.2e+02 Score=39.23 Aligned_cols=123 Identities=19% Similarity=0.104 Sum_probs=84.2
Q ss_pred HHHHHHHHHHhhHhhcCHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhccCcchHHH
Q 001448 128 QCLGELYRQFGRRITSGLLETTIIAAKLMKFNEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVDKSFVVR 207 (1075)
Q Consensus 128 ~cLG~l~~~~G~~l~s~~~e~~~~llK~lK~~~~~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~Dks~~Vr 207 (1075)
.++...|-.+-|....+|.-.+..++..+..+-..+|+-||++|+.|++ .-... -.++|.-- +...=+.|.+..||
T Consensus 797 a~li~~~la~~r~f~~sfD~yLk~Il~~l~e~~ialRtkAlKclS~ive-~Dp~v--L~~~dvq~-~Vh~R~~DssasVR 872 (1692)
T KOG1020|consen 797 AKLIVFYLAHARSFSQSFDPYLKLILSVLGENAIALRTKALKCLSMIVE-ADPSV--LSRPDVQE-AVHGRLNDSSASVR 872 (1692)
T ss_pred HHHHHHHHHhhhHHHHhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHh-cChHh--hcCHHHHH-HHHHhhccchhHHH
Confidence 3556677777888999999999999999998889999999999999998 22222 12444433 45555899999999
Q ss_pred HHHHHHHHHHHhhcCCCcccchhhh-HhhHHhhhccCCChhHHHHHHHHHHHHH
Q 001448 208 IAGARCLKAFAHIGGPCLGVGELDN-SATHCVKAIEDPIASVRDAFAEALGSLL 260 (1075)
Q Consensus 208 ~aAa~cL~~l~~~~~~~~~~~dlE~-l~sl~~K~le~s~~~vR~a~A~~La~lL 260 (1075)
-||.+-++-.+-.. + .-.+. ...+.-+ +-|..-.||.-+-+-+-.+-
T Consensus 873 EAaldLvGrfvl~~-~----e~~~qyY~~i~er-IlDtgvsVRKRvIKIlrdic 920 (1692)
T KOG1020|consen 873 EAALDLVGRFVLSI-P----ELIFQYYDQIIER-ILDTGVSVRKRVIKILRDIC 920 (1692)
T ss_pred HHHHHHHhhhhhcc-H----HHHHHHHHHHHhh-cCCCchhHHHHHHHHHHHHH
Confidence 99998886544421 1 11111 1222222 33445569998888887766
No 82
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=82.19 E-value=12 Score=37.07 Aligned_cols=145 Identities=17% Similarity=0.152 Sum_probs=80.9
Q ss_pred ChhHhHHHHHHHHHHhccC--CchhhHHhHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHhhHhhcCHHHHHHHHHHH
Q 001448 78 RRPVRHLASVAMGRIISKG--DNISVYSRVSSLQGFLSDGKKSEPQKVAGAAQCLGELYRQFGRRITSGLLETTIIAAKL 155 (1075)
Q Consensus 78 g~P~R~l~a~cl~~ly~~G--D~~~lf~~vn~l~~~l~~~k~~s~~~~~aA~~cLG~l~~~~G~~l~s~~~e~~~~llK~ 155 (1075)
|+.+|+=++.|++.++.+- +.-+ +-+.++...++. ++......+.+|..+-|.+++.
T Consensus 1 p~~i~~kl~~~l~~i~~~~~P~~Wp--~~l~~l~~~~~~----~~~~~~~~L~iL~~l~eEi~~~--------------- 59 (148)
T PF08389_consen 1 PPFIRNKLAQVLAEIAKRDWPQQWP--DFLEDLLQLLQS----SPQHLELVLRILRILPEEITDF--------------- 59 (148)
T ss_dssp -HHHHHHHHHHHHHHHHHHTTTTST--THHHHHHHHHHT----THHHHHHHHHHHHHHHHHHHTS---------------
T ss_pred ChhHHHHHHHHHHHHHHHHChhhCc--hHHHHHHHHhcc----chhHHHHHHHHHHHHHHHHHhh---------------
Confidence 4567999999999999874 2221 233466666652 3655557888888887777761
Q ss_pred hcc-CcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhcCCCcccchhhhHh
Q 001448 156 MKF-NEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGGPCLGVGELDNSA 234 (1075)
Q Consensus 156 lK~-~~~~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~~~~~~~~dlE~l~ 234 (1075)
.+. -...-|.++-..+... .+.+..=+++ ++..........+...+.+|+....... +.-.-.+ ..+.
T Consensus 60 ~~~~~~~~r~~~l~~~l~~~--------~~~i~~~l~~-~l~~~~~~~~~~~~~~~L~~l~s~i~~~-~~~~i~~-~~~l 128 (148)
T PF08389_consen 60 RRSSLSQERRRELKDALRSN--------SPDILEILSQ-ILSQSSSEANEELVKAALKCLKSWISWI-PIELIIN-SNLL 128 (148)
T ss_dssp HCCHSHHHHHHHHHHHHHHH--------HHHHHHHHHH-HHHHHCHCCHHHHHHHHHHHHHHHTTTS--HHHHHS-SSHH
T ss_pred hchhhhHHHHHHHHHHHHHH--------HHHHHHHHHH-HHHhhccccHHHHHHHHHHHHHHHHHhC-CHHHhcc-HHHH
Confidence 011 1122244444444432 1122222222 3333332233566677788888877732 1111111 1388
Q ss_pred hHHhhhccCCChhHHHHHHHHH
Q 001448 235 THCVKAIEDPIASVRDAFAEAL 256 (1075)
Q Consensus 235 sl~~K~le~s~~~vR~a~A~~L 256 (1075)
..+++.+.+++ +|.++++||
T Consensus 129 ~~~~~~l~~~~--~~~~A~~cl 148 (148)
T PF08389_consen 129 NLIFQLLQSPE--LREAAAECL 148 (148)
T ss_dssp HHHHHHTTSCC--CHHHHHHHH
T ss_pred HHHHHHcCCHH--HHHHHHHhC
Confidence 89999994444 699999886
No 83
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=81.48 E-value=14 Score=38.36 Aligned_cols=111 Identities=13% Similarity=0.156 Sum_probs=79.7
Q ss_pred HHHHHHHHHHhhcCCChhHhHHHHHHHHHHhcc-------------------------------------CCchhhHHhH
Q 001448 63 RKCEDALYSLLILGARRPVRHLASVAMGRIISK-------------------------------------GDNISVYSRV 105 (1075)
Q Consensus 63 ~~l~~~L~~ll~~~~g~P~R~l~a~cl~~ly~~-------------------------------------GD~~~lf~~v 105 (1075)
+.|-+.|++++...-.+++|+-+-|||+.|-.. .|-+-.--++
T Consensus 9 P~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ee~y~~vvi 88 (160)
T PF11865_consen 9 PELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSLDSKSSENSNDESTDISLPMMGISPSSEEYYPTVVI 88 (160)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccCCccccccccccchhhHHhhccCCCchHHHHHHHHH
Confidence 467788888888887788899888888876321 0001111134
Q ss_pred HHHHHhhhcCCCCCh-hhHHHHHHHHHHHHHHHhhHhhcCHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHh
Q 001448 106 SSLQGFLSDGKKSEP-QKVAGAAQCLGELYRQFGRRITSGLLETTIIAAKLMKFNEEFVRQEALLLLQNALE 176 (1075)
Q Consensus 106 n~l~~~l~~~k~~s~-~~~~aA~~cLG~l~~~~G~~l~s~~~e~~~~llK~lK~~~~~~R~~~l~~L~kil~ 176 (1075)
+.+..+++ |.+- .-..+++..+..+|++.|.+....++.++..+++.+++.++..|-..++-|+.++.
T Consensus 89 ~~L~~iL~---D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv~ 157 (160)
T PF11865_consen 89 NALMRILR---DPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLVS 157 (160)
T ss_pred HHHHHHHH---hhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 45555554 2222 22247888999999999988899999999999999998777888888888887765
No 84
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=80.02 E-value=8.5 Score=36.32 Aligned_cols=70 Identities=16% Similarity=0.082 Sum_probs=59.5
Q ss_pred HHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhcCCCcccchhhhHhhHHhhhccCCChhHHHHHHHHHHHHH
Q 001448 188 SEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGGPCLGVGELDNSATHCVKAIEDPIASVRDAFAEALGSLL 260 (1075)
Q Consensus 188 ~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~~~~~~~~dlE~l~sl~~K~le~s~~~vR~a~A~~La~lL 260 (1075)
++.|+.+++. ++|.-.|||..+..-|..|+... . ....+.+.+..++...++++++-|=-++-++|+++.
T Consensus 2 ~~~~~~al~~-L~dp~~PvRa~gL~~L~~Li~~~-~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La 71 (92)
T PF10363_consen 2 RETLQEALSD-LNDPLPPVRAHGLVLLRKLIESK-S-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALA 71 (92)
T ss_pred hHHHHHHHHH-ccCCCcchHHHHHHHHHHHHHcC-C-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHH
Confidence 3456655555 78999999999999999999974 3 455678899999999999999999999999999987
No 85
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.94 E-value=28 Score=44.48 Aligned_cols=142 Identities=16% Similarity=0.196 Sum_probs=105.9
Q ss_pred CChhHhHHHHHHHHHHhc-cCCchhhHHhHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHhhHhhcCHHHHHHHHHHH
Q 001448 77 ARRPVRHLASVAMGRIIS-KGDNISVYSRVSSLQGFLSDGKKSEPQKVAGAAQCLGELYRQFGRRITSGLLETTIIAAKL 155 (1075)
Q Consensus 77 ~g~P~R~l~a~cl~~ly~-~GD~~~lf~~vn~l~~~l~~~k~~s~~~~~aA~~cLG~l~~~~G~~l~s~~~e~~~~llK~ 155 (1075)
+.+-.|-.+|..+.++-. .||=..=|-. --.+.++++.++.+...|+.++..+|.+....-+.+++.+-|.+..++-.
T Consensus 818 ~~~d~~lkVGEai~k~~qa~Gel~~~y~~-~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~~ev~~~Il~l 896 (982)
T KOG4653|consen 818 LQTDYRLKVGEAILKVAQALGELVFKYKA-VLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDFFHEVLQLILSL 896 (982)
T ss_pred CCccceehHHHHHHHHHHHhccHHHHHHH-HHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 445568888988888776 4775544432 12333444323434456889999999999999999999999999999999
Q ss_pred hcc-CcHHHHHHHHHHHHHHHhcCCCCCch---hHHHHHHHHHHHHhcc-CcchHHHHHHHHHHHHHHhh
Q 001448 156 MKF-NEEFVRQEALLLLQNALEGSGGSAAA---SAYSEAFRLIMRFAIV-DKSFVVRIAGARCLKAFAHI 220 (1075)
Q Consensus 156 lK~-~~~~~R~~~l~~L~kil~g~g~~~~~---~~~~di~K~~~r~~~~-Dks~~Vr~aAa~cL~~l~~~ 220 (1075)
.+. .+..+|.+|...+.-.+.|+|.-+-+ ....|.++. .++... |..=.++..|+.|+.++...
T Consensus 897 ~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~t-l~~~vr~~~dd~~klhaql~leei~a~ 965 (982)
T KOG4653|consen 897 ETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDET-LLSYVRQHDDDGLKLHAQLCLEEIQAA 965 (982)
T ss_pred HccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHH-HHHHHhcCchhHHHHHHHHHHHHHHHH
Confidence 997 47889999999999999999965532 235688885 455443 57778999999999887653
No 86
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=79.91 E-value=1.2e+02 Score=36.65 Aligned_cols=139 Identities=21% Similarity=0.231 Sum_probs=98.4
Q ss_pred hhhHHHHHHHHHHHHHHHhhHhhcCH-----HH-----HHHHHHHHhccCcHHHHHHHHHHHHHHHhcCCC---------
Q 001448 120 PQKVAGAAQCLGELYRQFGRRITSGL-----LE-----TTIIAAKLMKFNEEFVRQEALLLLQNALEGSGG--------- 180 (1075)
Q Consensus 120 ~~~~~aA~~cLG~l~~~~G~~l~s~~-----~e-----~~~~llK~lK~~~~~~R~~~l~~L~kil~g~g~--------- 180 (1075)
.+.|.+|++|+-.+.+...|...-.+ |+ +=+.++-.+|......|..+++-+..++.|...
T Consensus 10 akvr~~al~~~~~~~~~~~~~~~ygyw~~~~pd~~~~g~p~l~~l~lkd~~~~~ra~alqv~~~~l~gsk~fls~a~~~~ 89 (728)
T KOG4535|consen 10 AKVRQGALVCFLSTIKSIEKKVLYGYWSAFIPDTPELGSPSLMTLTLKDPSPKTRACALQVLSAILEGSKQFLSVAEDTS 89 (728)
T ss_pred HHHHhhHHHHHHHHHhhhhhhhhhceeeeecCCCCCCCCceeeEEecCCCChhHHHHHHHHHHHHHHhhHHHHHHHhccC
Confidence 45678999999999988877653221 11 112344456777788999999999999998753
Q ss_pred -CC-------chhHHHHHHHHHHHHhcc-CcchHHHHHHHHHHHHHHhhcCCCc--ccchhhhHhhHHhhhccCCChhHH
Q 001448 181 -SA-------AASAYSEAFRLIMRFAIV-DKSFVVRIAGARCLKAFAHIGGPCL--GVGELDNSATHCVKAIEDPIASVR 249 (1075)
Q Consensus 181 -~~-------~~~~~~di~K~~~r~~~~-Dks~~Vr~aAa~cL~~l~~~~~~~~--~~~dlE~l~sl~~K~le~s~~~vR 249 (1075)
++ -.+..++.|+ +.=.++. +-+.+|-.-..+||..|+..+ ||= ..+=+-.+..-+-|.+.++|..||
T Consensus 90 ~~~ftpf~v~~a~si~~~~r-~l~~~l~~e~~~~~~tq~~kcla~lv~~~-p~~~l~~~~~~~~~~~ik~~i~~~d~~v~ 167 (728)
T KOG4535|consen 90 DHAFTPFSVMIACSIRELHR-CLLLALVAESSSQTVTQIIKCLANLVSNA-PYDRLKLSLLTKVWNQIKPYIRHKDVNVR 167 (728)
T ss_pred CcCCCchHHHHHHHHHHHHH-HHHHHHHHhcCchhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHhhcCCCChh
Confidence 11 0234667777 3333333 466788888899999999974 763 334444567777888999999999
Q ss_pred HHHHHHHHHHH
Q 001448 250 DAFAEALGSLL 260 (1075)
Q Consensus 250 ~a~A~~La~lL 260 (1075)
-+.--.++.+.
T Consensus 168 vs~l~~~~~~v 178 (728)
T KOG4535|consen 168 VSSLTLLGAIV 178 (728)
T ss_pred hHHHHHHHHHH
Confidence 98888888776
No 87
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=78.96 E-value=1.1e+02 Score=37.09 Aligned_cols=155 Identities=14% Similarity=0.034 Sum_probs=105.7
Q ss_pred CCchhhHH----h-HHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHhhHhhcCHHHHHHHHHHHhccCcHHHHHHHHHH
Q 001448 96 GDNISVYS----R-VSSLQGFLSDGKKSEPQKVAGAAQCLGELYRQFGRRITSGLLETTIIAAKLMKFNEEFVRQEALLL 170 (1075)
Q Consensus 96 GD~~~lf~----~-vn~l~~~l~~~k~~s~~~~~aA~~cLG~l~~~~G~~l~s~~~e~~~~llK~lK~~~~~~R~~~l~~ 170 (1075)
-+++++|+ + ...+.+++++.+ +...+.-|+-+|++|-+.--..+....+.++.-.+-.-|..+..+...+-..
T Consensus 317 e~sfsvWeq~f~~iL~~l~EvL~d~~--~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed 394 (516)
T KOG2956|consen 317 EGSFSVWEQHFAEILLLLLEVLSDSE--DEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAKDSQDEVMRVAEED 394 (516)
T ss_pred ccchhHHHHHHHHHHHHHHHHHccch--hhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHhCCchhHHHHHHHH
Confidence 35667766 2 224556665222 2333446999999999998888888888888777777788888777777777
Q ss_pred HHHHHhcCCCCCchhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhcCCCcccchhhhHhhHHhhhccCCChhHHH
Q 001448 171 LQNALEGSGGSAAASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGGPCLGVGELDNSATHCVKAIEDPIASVRD 250 (1075)
Q Consensus 171 L~kil~g~g~~~~~~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~~~~~~~~dlE~l~sl~~K~le~s~~~vR~ 250 (1075)
.-.++...- ......-|-+ -.++ -+.+.-.++.+|+..++..-..=--.+=++.+....+++.++.+..||.
T Consensus 395 ~~~~las~~---P~~~I~~i~~----~Ilt-~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~SS~VRK 466 (516)
T KOG2956|consen 395 CLTTLASHL---PLQCIVNISP----LILT-ADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDSTSSTVRK 466 (516)
T ss_pred HHHHHHhhC---chhHHHHHhh----HHhc-CcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCchHHhhh
Confidence 666666332 2333444333 3344 5667777889999999885200001123345778899999999999999
Q ss_pred HHHHHHHHHH
Q 001448 251 AFAEALGSLL 260 (1075)
Q Consensus 251 a~A~~La~lL 260 (1075)
.+-=||-++.
T Consensus 467 taVfCLVamv 476 (516)
T KOG2956|consen 467 TAVFCLVAMV 476 (516)
T ss_pred hHHHhHHHHH
Confidence 9999988776
No 88
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=78.86 E-value=70 Score=40.34 Aligned_cols=100 Identities=17% Similarity=0.133 Sum_probs=60.2
Q ss_pred HHHHHHHHhhcCCCh---hHhHHHHHHHHHHhc--cCCchhhHHhHH-HHHHhhhcCCCCChhhHHHHHHHHHHHHHHHh
Q 001448 65 CEDALYSLLILGARR---PVRHLASVAMGRIIS--KGDNISVYSRVS-SLQGFLSDGKKSEPQKVAGAAQCLGELYRQFG 138 (1075)
Q Consensus 65 l~~~L~~ll~~~~g~---P~R~l~a~cl~~ly~--~GD~~~lf~~vn-~l~~~l~~~k~~s~~~~~aA~~cLG~l~~~~G 138 (1075)
+++.++.-+..+.-. -+|.-....++.+-. .-=.-.+|+.++ +++. +-||-.|..|+-|+-||..+=+
T Consensus 82 lV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~---Rl~Drep~VRiqAv~aLsrlQ~--- 155 (892)
T KOG2025|consen 82 LVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLI---RLKDREPNVRIQAVLALSRLQG--- 155 (892)
T ss_pred HHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHH---HHhccCchHHHHHHHHHHHHhc---
Confidence 666777777666444 447777777777765 111235666555 3333 2347788888889999886543
Q ss_pred hHhhcCHHHHHHHHHHHhcc-CcHHHHHHHHHHH
Q 001448 139 RRITSGLLETTIIAAKLMKF-NEEFVRQEALLLL 171 (1075)
Q Consensus 139 ~~l~s~~~e~~~~llK~lK~-~~~~~R~~~l~~L 171 (1075)
+=..-=-++++++.-++.+ ..+-+|.++|..+
T Consensus 156 -d~~dee~~v~n~l~~liqnDpS~EVRRaaLsnI 188 (892)
T KOG2025|consen 156 -DPKDEECPVVNLLKDLIQNDPSDEVRRAALSNI 188 (892)
T ss_pred -CCCCCcccHHHHHHHHHhcCCcHHHHHHHHHhh
Confidence 1111222456666666666 3567898888654
No 89
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=78.71 E-value=80 Score=42.93 Aligned_cols=202 Identities=13% Similarity=0.080 Sum_probs=123.0
Q ss_pred cchhHHHHHHHHhhhccCCCCchhHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHhhcCCChhHhHHHHHHHHHHhc
Q 001448 15 FGVLVAQLESIVASASQQSPDPLLCFDLLSDLISAIDEEPKESILLWQRKCEDALYSLLILGARRPVRHLASVAMGRIIS 94 (1075)
Q Consensus 15 ~~~~~a~le~~~~~~~~~~~~~~~~~~wL~~L~~~l~~~~k~di~~~Q~~l~~~L~~ll~~~~g~P~R~l~a~cl~~ly~ 94 (1075)
|-.++.|++-+-..-+-..+|-..++|=|.... ...-..-.|+.+-=..+-..++.+++.+-+--+=+ +...+..++.
T Consensus 96 f~~~~~q~~gL~d~~sp~f~r~~~lletl~~~k-~~l~~~l~d~~e~~~~~f~~f~d~~~~~~~~~v~~-~~~i~~~li~ 173 (1266)
T KOG1525|consen 96 FQLILSQFSGLGDVESPYFKRYFYLLETLAKVK-FCLLMLLEDCQELVHELFRTFFDLARKGHPKKVFN-MLDIAIMLIT 173 (1266)
T ss_pred HHHHHHHHhhccCCCCcchhhHHHHHHHHHHhH-HHheeeccchHHHHHHHHHHHHHHHhccccHHHHH-HHHHHHHHHH
Confidence 567788888887777777778888888888877 66666667777766666677777776555544444 7777888888
Q ss_pred cCCchhhHHhHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHH--------------Hhh-HhhcCHHHHHHHHHHH----
Q 001448 95 KGDNISVYSRVSSLQGFLSDGKKSEPQKVAGAAQCLGELYRQ--------------FGR-RITSGLLETTIIAAKL---- 155 (1075)
Q Consensus 95 ~GD~~~lf~~vn~l~~~l~~~k~~s~~~~~aA~~cLG~l~~~--------------~G~-~l~s~~~e~~~~llK~---- 155 (1075)
.+|+...-=..--+.++++.+++.-+..+.-|-.|+-.+-.. .++ +..+.......+++++
T Consensus 174 e~d~v~~e~L~~ll~~lv~~~~~~~~~a~~la~~li~~~a~~~~~~i~~f~~~~~~~~~s~~~~~~~~~he~i~~L~~~~ 253 (1266)
T KOG1525|consen 174 EEDTVQSELLDVLLENLVKPGRDTIKEADKLASDLIERCADNLEDTIANFLNSCLTEYKSRQSSLKIKYHELILELWRIA 253 (1266)
T ss_pred hhccchHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHhhhhhchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHhh
Confidence 888755433223344555533333222211111111111000 000 1111111222222222
Q ss_pred ----------h----ccCcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhh
Q 001448 156 ----------M----KFNEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHI 220 (1075)
Q Consensus 156 ----------l----K~~~~~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~ 220 (1075)
+ .+....+|-.+..+++.++.--+.-.. ..+.++|+. +=.-.+|++.+||.++.+|-...+..
T Consensus 254 p~ll~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~-~~~~~~~~~-fl~r~~D~~~~vR~~~v~~~~~~l~~ 330 (1266)
T KOG1525|consen 254 PQLLLAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLS-ETYDDLWSA-FLGRFNDISVEVRMECVESIKQCLLN 330 (1266)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhc-ccchHHHHH-HHHHhccCChhhhhhHHHHhHHHHhc
Confidence 2 224678999999999999986664444 468999994 44458999999999999888776554
No 90
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=77.32 E-value=8 Score=38.25 Aligned_cols=72 Identities=22% Similarity=0.182 Sum_probs=51.2
Q ss_pred HHHHHHHhhcccCCCChhHHHHHHHHHHHHHHHhCCCchhh-HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Q 001448 377 SFLVFLGKQLQAVDASPFMKIAALRTLSYTLKTLGEVPSEF-KEVLDSTVVAAVSHSSQLVRIEAALTLRALAE 449 (1075)
Q Consensus 377 ~~~~~l~~~~~~~~~s~~~lv~aL~el~~Ll~~LGsa~~~~-~~~l~d~L~~lL~hps~svRi~AA~cLr~~~~ 449 (1075)
++++.|++-+...+ ++-++.+|+.-+|.+++..-..-.-+ .-+.++.+++++.||+..||.+|-.|+..+..
T Consensus 43 ~llk~L~~lL~~s~-d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 43 ELLKKLIKLLDKSD-DPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHHHH-SHH-HHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCC-CcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 44555555442222 45688889999999999974432223 24589999999999999999999999988764
No 91
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=76.26 E-value=28 Score=37.01 Aligned_cols=170 Identities=16% Similarity=0.139 Sum_probs=107.3
Q ss_pred HHHHHHHhhhccCCCCchhHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHhhcCCChhHhHHHHHHHHHHhccCCch
Q 001448 20 AQLESIVASASQQSPDPLLCFDLLSDLISAIDEEPKESILLWQRKCEDALYSLLILGARRPVRHLASVAMGRIISKGDNI 99 (1075)
Q Consensus 20 a~le~~~~~~~~~~~~~~~~~~wL~~L~~~l~~~~k~di~~~Q~~l~~~L~~ll~~~~g~P~R~l~a~cl~~ly~~GD~~ 99 (1075)
+-|..+-+=.++.+||.+| =-|-.++ +.. -...+.-...|+..|..-|-+=+|-..+..++.++... +
T Consensus 5 ~Al~~L~al~k~~~~r~l~-~yW~~ll----P~~-----~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gs--k 72 (182)
T PF13251_consen 5 AALQCLQALAKSTDKRSLF-GYWPALL----PDS-----VLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGS--K 72 (182)
T ss_pred HHHHHHHHHHHhcCCceeH-hhHHHHC----CCC-----CCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHcc--H
Confidence 4455554444554666443 3455554 333 11122234467778888899999999999999999874 3
Q ss_pred hhHHhHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHhhHhhcCHHHHHHHHHHHhcc-CcHHHHHHHHHHHHHHHhcC
Q 001448 100 SVYSRVSSLQGFLSDGKKSEPQKVAGAAQCLGELYRQFGRRITSGLLETTIIAAKLMKF-NEEFVRQEALLLLQNALEGS 178 (1075)
Q Consensus 100 ~lf~~vn~l~~~l~~~k~~s~~~~~aA~~cLG~l~~~~G~~l~s~~~e~~~~llK~lK~-~~~~~R~~~l~~L~kil~g~ 178 (1075)
.-+..+++.. ++ ..+. ..+-.++|+++...+.- ++..+.. ++..+...+++++...+.+.
T Consensus 73 ~~L~~Ae~~~-----~~--~~sF--------tslS~tLa~~i~~lH~~----Ll~~L~~E~~~~~l~q~lK~la~Lv~~t 133 (182)
T PF13251_consen 73 PFLAQAEESK-----GP--SGSF--------TSLSSTLASMIMELHRG----LLLALQAEKSPPVLTQLLKCLAVLVQAT 133 (182)
T ss_pred HHHHHHHhcC-----CC--CCCc--------ccHHHHHHHHHHHHHHH----HHHHHhcccccHHHHHHHHHHHHHHccC
Confidence 2232222111 11 1111 13455666666665554 3333333 56677789999999988876
Q ss_pred CC-CCchhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhc
Q 001448 179 GG-SAAASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIG 221 (1075)
Q Consensus 179 g~-~~~~~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~ 221 (1075)
.= ........++++. +|.-+.+++..||.++.-|+..+....
T Consensus 134 PY~rL~~~ll~~~v~~-v~~~l~~~d~~v~v~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 134 PYHRLPPGLLTEVVTQ-VRPLLRHRDPNVRVAALSCLGALLSVQ 176 (182)
T ss_pred ChhhcCHhHHHHHHHH-HHHHHhcCCCcHHHHHHHHHHHHHcCC
Confidence 62 2256788888985 666678899999999999999988753
No 92
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=76.03 E-value=56 Score=43.44 Aligned_cols=213 Identities=13% Similarity=0.136 Sum_probs=145.6
Q ss_pred HHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHhhcCCChhHhHHHHHHHHHHhccCCchhhHHhHHHHHHhhhcC----
Q 001448 40 FDLLSDLISAIDEEPKESILLWQRKCEDALYSLLILGARRPVRHLASVAMGRIISKGDNISVYSRVSSLQGFLSDG---- 115 (1075)
Q Consensus 40 ~~wL~~L~~~l~~~~k~di~~~Q~~l~~~L~~ll~~~~g~P~R~l~a~cl~~ly~~GD~~~lf~~vn~l~~~l~~~---- 115 (1075)
++-|..+--.+...++.|..-.|-++---|..+++.+..--+|=..|.|++.+=...-+|..+..--.+++++++-
T Consensus 483 l~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset 562 (1431)
T KOG1240|consen 483 LETLTELLALVRDIPPSDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSET 562 (1431)
T ss_pred HHHHHHHHhhccCCCcccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCccccc
Confidence 4455566666777788888888888888888888777777779999999999877666666665555555555410
Q ss_pred -------------------------CCCChhhHHHHHHHHHHHHHHHhhHhhcCHHHHHHHHHHHhccCcHHHHHHHHHH
Q 001448 116 -------------------------KKSEPQKVAGAAQCLGELYRQFGRRITSGLLETTIIAAKLMKFNEEFVRQEALLL 170 (1075)
Q Consensus 116 -------------------------k~~s~~~~~aA~~cLG~l~~~~G~~l~s~~~e~~~~llK~lK~~~~~~R~~~l~~ 170 (1075)
-|.+|..|-+-+.-++.++.=||+.=.+=. +.+.+.-.|-..+-.+|.+-+..
T Consensus 563 ~~~~~~~~~~~~L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ksND~--iLshLiTfLNDkDw~LR~aFfds 640 (1431)
T KOG1240|consen 563 APEQNYNTELQALHHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEKSNDV--ILSHLITFLNDKDWRLRGAFFDS 640 (1431)
T ss_pred ccccccchHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhcccccc--hHHHHHHHhcCccHHHHHHHHhh
Confidence 011233445677778888888887654433 33444444444478899988877
Q ss_pred HHHHHhcCCCCCchhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhcCCCcccchhhhHhhHHhhhccCCChhHHH
Q 001448 171 LQNALEGSGGSAAASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGGPCLGVGELDNSATHCVKAIEDPIASVRD 250 (1075)
Q Consensus 171 L~kil~g~g~~~~~~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~~~~~~~~dlE~l~sl~~K~le~s~~~vR~ 250 (1075)
+.-+.--+|.- ...++.+=.+-.+++|..-.|-+.|.+|+.-|.+.+ ++..--+-.+.....=.+-.+|.=+|+
T Consensus 641 I~gvsi~VG~r----s~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~--ll~K~~v~~i~~~v~PlL~hPN~WIR~ 714 (1431)
T KOG1240|consen 641 IVGVSIFVGWR----SVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLG--LLRKPAVKDILQDVLPLLCHPNLWIRR 714 (1431)
T ss_pred ccceEEEEeee----eHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhc--ccchHHHHHHHHhhhhheeCchHHHHH
Confidence 76555555532 244555544556899999999999999999999964 443322233455555567779999999
Q ss_pred HHHHHHHHHH
Q 001448 251 AFAEALGSLL 260 (1075)
Q Consensus 251 a~A~~La~lL 260 (1075)
++-.-++++.
T Consensus 715 ~~~~iI~~~~ 724 (1431)
T KOG1240|consen 715 AVLGIIAAIA 724 (1431)
T ss_pred HHHHHHHHHH
Confidence 9887777655
No 93
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.71 E-value=18 Score=41.19 Aligned_cols=120 Identities=13% Similarity=0.118 Sum_probs=72.7
Q ss_pred HHHHHHhccCCchhhHHhHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHhhHhhcCHHHHHHHHHHHhccCcHHHHHH
Q 001448 87 VAMGRIISKGDNISVYSRVSSLQGFLSDGKKSEPQKVAGAAQCLGELYRQFGRRITSGLLETTIIAAKLMKFNEEFVRQE 166 (1075)
Q Consensus 87 ~cl~~ly~~GD~~~lf~~vn~l~~~l~~~k~~s~~~~~aA~~cLG~l~~~~G~~l~s~~~e~~~~llK~lK~~~~~~R~~ 166 (1075)
|||+.-....=---|.++|-.+.+-++ +++ |...+ +|+.|++++|..++..+.......+..+++---....++|..
T Consensus 113 rrLs~fh~e~l~~~L~~vii~vvkslK-NlR-S~Vsr-aA~~t~~difs~ln~~i~~~ld~lv~~Ll~ka~~dnrFvred 189 (334)
T KOG2933|consen 113 RRLSEFHPESLNPMLHEVIIAVVKSLK-NLR-SAVSR-AACMTLADIFSSLNNSIDQELDDLVTQLLHKASQDNRFVRED 189 (334)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHhc-ChH-HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHH
Confidence 344443333323334455555555554 323 34455 799999999999999997755544444433222246799999
Q ss_pred HHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHH
Q 001448 167 ALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAF 217 (1075)
Q Consensus 167 ~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l 217 (1075)
+-++|.+++...-. ..+.+. .-.+...+...||.-++.|.-..
T Consensus 190 a~kAL~aMV~~vtp---~~~L~~-----L~~~~~~~n~r~r~~a~~~~~~~ 232 (334)
T KOG2933|consen 190 AEKALVAMVNHVTP---QKLLRK-----LIPILQHSNPRVRAKAALCFSRC 232 (334)
T ss_pred HHHHHHHHHhccCh---HHHHHH-----HHHHHhhhchhhhhhhhcccccc
Confidence 99999999885542 122222 22335566677888888786333
No 94
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=75.37 E-value=8.3 Score=38.13 Aligned_cols=72 Identities=28% Similarity=0.394 Sum_probs=48.6
Q ss_pred HHhHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHh--hHhhcCHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHh
Q 001448 102 YSRVSSLQGFLSDGKKSEPQKVAGAAQCLGELYRQFG--RRITSGLLETTIIAAKLMKFNEEFVRQEALLLLQNALE 176 (1075)
Q Consensus 102 f~~vn~l~~~l~~~k~~s~~~~~aA~~cLG~l~~~~G--~~l~s~~~e~~~~llK~lK~~~~~~R~~~l~~L~kil~ 176 (1075)
|+.+..|.++|.. .++|...+-|++=||++.+.+. |.+..... .=..++++|....+.+|++||.+++|++.
T Consensus 42 ~~llk~L~~lL~~--s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg-~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 42 FELLKKLIKLLDK--SDDPTTLAVACHDIGEFVRHYPNGRNIIEKLG-AKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp GHHHHHHHHHH-S--HHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHS-HHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHcc--CCCcceeehhhcchHHHHHHChhHHHHHHhcC-hHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 5566788888842 3367777779999999988764 44432222 22345556666788999999999999875
No 95
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.58 E-value=26 Score=42.24 Aligned_cols=104 Identities=15% Similarity=0.039 Sum_probs=82.4
Q ss_pred CCChhhHHHHHHHHHHHHHHHhhHhhcCHHHHHHHHHHHhc-cCcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHH
Q 001448 117 KSEPQKVAGAAQCLGELYRQFGRRITSGLLETTIIAAKLMK-FNEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIM 195 (1075)
Q Consensus 117 ~~s~~~~~aA~~cLG~l~~~~G~~l~s~~~e~~~~llK~lK-~~~~~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~ 195 (1075)
|.+.+.+..|+.|||.++.-..+....-.+..+..+.+.+= .+..-+..++|.+|.++++..-+-.-+++..+|--+ .
T Consensus 269 dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialr-l 347 (533)
T KOG2032|consen 269 DPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIALR-L 347 (533)
T ss_pred CchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHHH-H
Confidence 44556778999999999998888888888888888888664 455778889999999999977654444555555554 6
Q ss_pred HHhccCcchHHHHHHHHHHHHHHhhc
Q 001448 196 RFAIVDKSFVVRIAGARCLKAFAHIG 221 (1075)
Q Consensus 196 r~~~~Dks~~Vr~aAa~cL~~l~~~~ 221 (1075)
|....|....+|.+|..-...|.+-.
T Consensus 348 R~l~~se~~~~R~aa~~Lfg~L~~l~ 373 (533)
T KOG2032|consen 348 RTLFDSEDDKMRAAAFVLFGALAKLA 373 (533)
T ss_pred HHHHHhcChhhhhhHHHHHHHHHHHc
Confidence 77677788999999999888888853
No 96
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=74.45 E-value=69 Score=41.10 Aligned_cols=120 Identities=15% Similarity=0.077 Sum_probs=79.4
Q ss_pred hHHHHHHHHHHhccCCchhhHHhHHHHHHhhh--cCCCCChhhHHHHHHHHHHHHHHHhhHhhcCHHHHHHHHHHHhccC
Q 001448 82 RHLASVAMGRIISKGDNISVYSRVSSLQGFLS--DGKKSEPQKVAGAAQCLGELYRQFGRRITSGLLETTIIAAKLMKFN 159 (1075)
Q Consensus 82 R~l~a~cl~~ly~~GD~~~lf~~vn~l~~~l~--~~k~~s~~~~~aA~~cLG~l~~~~G~~l~s~~~e~~~~llK~lK~~ 159 (1075)
|.-..|=+......||- +++ -+.+++| ..+|.+-+++ ++-==..|.++-. ..+-..|+.+.|-++..
T Consensus 36 kidAmK~iIa~M~~G~d--mss---Lf~dViK~~~trd~ElKrL---~ylYl~~yak~~P---~~~lLavNti~kDl~d~ 104 (757)
T COG5096 36 KIDAMKKIIAQMSLGED--MSS---LFPDVIKNVATRDVELKRL---LYLYLERYAKLKP---ELALLAVNTIQKDLQDP 104 (757)
T ss_pred HHHHHHHHHHHHhcCCC--hHH---HHHHHHHHHHhcCHHHHHH---HHHHHHHHhccCH---HHHHHHHHHHHhhccCC
Confidence 33344444455556666 333 2344444 1223233332 2222344444433 44677888888888888
Q ss_pred cHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhh
Q 001448 160 EEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHI 220 (1075)
Q Consensus 160 ~~~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~ 220 (1075)
.+.+|+.+++++.+ ++ +..+..-+++ ..|.+++|+..-||..|+-|+..+++-
T Consensus 105 N~~iR~~AlR~ls~----l~---~~el~~~~~~-~ik~~l~d~~ayVRk~Aalav~kly~l 157 (757)
T COG5096 105 NEEIRGFALRTLSL----LR---VKELLGNIID-PIKKLLTDPHAYVRKTAALAVAKLYRL 157 (757)
T ss_pred CHHHHHHHHHHHHh----cC---hHHHHHHHHH-HHHHHccCCcHHHHHHHHHHHHHHHhc
Confidence 89999999999988 44 2456777777 578889999999999999999999985
No 97
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=74.42 E-value=78 Score=38.21 Aligned_cols=154 Identities=18% Similarity=0.207 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHhcc-CcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHHhhcC
Q 001448 145 LLETTIIAAKLMKF-NEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVD-KSFVVRIAGARCLKAFAHIGG 222 (1075)
Q Consensus 145 ~~e~~~~llK~lK~-~~~~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~D-ks~~Vr~aAa~cL~~l~~~~~ 222 (1075)
|.++...++-.+.. .+..-|..+++.|+++|+.-....-++.---|-| ....+ .| ..-.+|.|+-.|+.-+..+ .
T Consensus 327 f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K-~Leaa-~ds~~~v~~~Aeed~~~~las~-~ 403 (516)
T KOG2956|consen 327 FAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICK-VLEAA-KDSQDEVMRVAEEDCLTTLASH-L 403 (516)
T ss_pred HHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHH-HHHHH-hCCchhHHHHHHHHHHHHHHhh-C
Confidence 56667777777766 4667899999999999997775553344445566 34443 45 4445666666677777765 3
Q ss_pred CCcccchhhhHhhHHhhhccCCChhHHHHHHHHHHHHHHhccCCCCcCCCCCCCCCCCCCChhHHHHHHh---hhhhccc
Q 001448 223 PCLGVGELDNSATHCVKAIEDPIASVRDAFAEALGSLLALGMNPQAQVQPKGKGPFPPAKKLEGGLQRHL---ALPFTRA 299 (1075)
Q Consensus 223 ~~~~~~dlE~l~sl~~K~le~s~~~vR~a~A~~La~lLa~~~~~~~~~~~~~k~~~~~~k~l~~~l~~~L---s~~f~k~ 299 (1075)
|+ .....+.+.+-+.|+..-.++-+++-.+.- . .+.|+-+. ++ .-.++++
T Consensus 404 P~-------~~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e-----~--------------l~~EeL~~-ll~diaP~~iqa 456 (516)
T KOG2956|consen 404 PL-------QCIVNISPLILTADEPRAVAVIKMLTKLFE-----R--------------LSAEELLN-LLPDIAPCVIQA 456 (516)
T ss_pred ch-------hHHHHHhhHHhcCcchHHHHHHHHHHHHHh-----h--------------cCHHHHHH-hhhhhhhHHHHH
Confidence 42 222333344444777777777777777661 1 12233222 33 2346666
Q ss_pred CCCCcchhHHHHHHHHHHHHHHhcccccC
Q 001448 300 NGAKSKNMRVNLTLSWVYFLQAIRLKYFH 328 (1075)
Q Consensus 300 ~~~~~r~~R~Gv~~ayv~fl~~lg~~wle 328 (1075)
-.+.+..||=.+..|.|+++..+|..=+|
T Consensus 457 y~S~SS~VRKtaVfCLVamv~~vG~~~me 485 (516)
T KOG2956|consen 457 YDSTSSTVRKTAVFCLVAMVNRVGMEEME 485 (516)
T ss_pred hcCchHHhhhhHHHhHHHHHHHHhHHhhh
Confidence 55557889999999999999999944443
No 98
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.40 E-value=1.9e+02 Score=36.80 Aligned_cols=224 Identities=16% Similarity=0.178 Sum_probs=137.3
Q ss_pred ChHHHHHHHHHHHHHHhcCCccHHHHHHH--Hhccc-----------------c-ccCCchhhHHHHHHHHHHHHhhCCc
Q 001448 820 GSEVLNSIQAIFLSILAEGDICASQRRAL--LLGDL-----------------T-VVTDANYAGSIALAIGCIHRSAGGM 879 (1075)
Q Consensus 820 ~~~v~~~~~~ll~~~l~~~d~~~~~r~aa--lv~~i-----------------v-~~~dp~~Rag~aLALG~I~r~vGgm 879 (1075)
+.++.+.+..-|++=+.+.|+. ..+-| +|+.| + ....+..|=..||+|=.+||..-
T Consensus 105 n~dl~klvin~iknDL~srn~~--fv~LAL~~I~niG~re~~ea~~~DI~KlLvS~~~~~~vkqkaALclL~L~r~sp-- 180 (938)
T KOG1077|consen 105 NSDLMKLVINSIKNDLSSRNPT--FVCLALHCIANIGSREMAEAFADDIPKLLVSGSSMDYVKQKAALCLLRLFRKSP-- 180 (938)
T ss_pred chHHHHHHHHHHHhhhhcCCcH--HHHHHHHHHHhhccHhHHHHhhhhhHHHHhCCcchHHHHHHHHHHHHHHHhcCc--
Confidence 5778888877777777666642 22222 22222 2 34566788888999999999844
Q ss_pred ccccccchhHHHHHHHHHHHHHhcCCcccchhhHHHHHHHHHhccCCCCc-hhHHHHHHHHHHHHHhhCCCCCCCcc---
Q 001448 880 ALSSLVPATMWSLHGLLLTIEAAGFSFVSHVQATLGLAMEILLSEENGWV-DLQQGVGRLINAIVAVLGPELAPGSI--- 955 (1075)
Q Consensus 880 as~~Ll~~~~WaL~aL~li~dsaG~~f~~~v~stL~ll~~lll~~~~~~~-~~~~~igr~l~alI~~LGPeLq~~s~--- 955 (1075)
=+.++.-|+=.=+.+.=|.. + ..+.++.+++.-+--..|..+- -+..+++|+.+ ++.+.|-++||-+=
T Consensus 181 ---Dl~~~~~W~~riv~LL~D~~---~-gv~ta~~sLi~~lvk~~p~~yk~~~~~avs~L~r-iv~~~~t~~qdYTyy~v 252 (938)
T KOG1077|consen 181 ---DLVNPGEWAQRIVHLLDDQH---M-GVVTAATSLIEALVKKNPESYKTCLPLAVSRLSR-IVVVVGTSLQDYTYYFV 252 (938)
T ss_pred ---cccChhhHHHHHHHHhCccc---c-ceeeehHHHHHHHHHcCCHHHhhhHHHHHHHHHH-HHhhcccchhhceeecC
Confidence 46667789888777766664 2 4455666665554444443331 23455666544 46667888877642
Q ss_pred -----hhhhhhc--ccc-CCC--chhHHHHHhhHHhhccCCC-------------------------cc-----hhHHHH
Q 001448 956 -----FFSRCKV--SAW-QCS--SPKWSVRFTQQLVLFAPQA-------------------------VS-----VHSHVQ 995 (1075)
Q Consensus 956 -----~~~~~~~--~~~-~~~--~~~eai~clQqL~lFAP~~-------------------------v~-----~~~lV~ 995 (1075)
...+|.. ... .++ ..+..+.|+|.+.+=+-.- +| ++.-|.
T Consensus 253 P~PWL~vKl~rlLq~~p~~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~~~~~ 332 (938)
T KOG1077|consen 253 PAPWLQVKLLRLLQIYPTPEDPSTRARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLSRAVN 332 (938)
T ss_pred CChHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 1112211 011 111 2356666666666554411 11 112345
Q ss_pred HHHHhhcCCChhHHHHHHHHHHHHHccCh-hhHhhhchHHHHHHhhccCCCHHHHH-----HHHHHh
Q 001448 996 TLLSTLSSRQPILRHLAVSTLRHLIEKDP-DSVIEERIEGNLFHMLDEETDSEYVK-----SYTLCL 1056 (1075)
Q Consensus 996 ~L~~~L~S~~~~Lr~aav~cLrqL~qR~a-~~v~~~~le~~Lf~~LD~e~d~~l~~-----~~~~~~ 1056 (1075)
.|+..|++...-+|=.|.+.+..|+--+. .+..++. -+.++..|.+|+|..++| +|.-|-
T Consensus 333 ~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h-~d~Ii~sLkterDvSirrravDLLY~mcD 398 (938)
T KOG1077|consen 333 QLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKH-QDTIINSLKTERDVSIRRRAVDLLYAMCD 398 (938)
T ss_pred HHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHH-HHHHHHHhccccchHHHHHHHHHHHHHhc
Confidence 58888888888888888888888876653 3444555 778889999999998887 677774
No 99
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.75 E-value=80 Score=39.91 Aligned_cols=158 Identities=11% Similarity=0.084 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhcCCChhHhHHHHHHHHHHhcc-------CCchhhHHhHHHHHHhhhcCCCCChhhHHHHHHHHHHHHH
Q 001448 63 RKCEDALYSLLILGARRPVRHLASVAMGRIISK-------GDNISVYSRVSSLQGFLSDGKKSEPQKVAGAAQCLGELYR 135 (1075)
Q Consensus 63 ~~l~~~L~~ll~~~~g~P~R~l~a~cl~~ly~~-------GD~~~lf~~vn~l~~~l~~~k~~s~~~~~aA~~cLG~l~~ 135 (1075)
+++-+-|.++|.... ..-|+-.|.-++-++ -++.+.--.|.+|..++- |++|.-+.-++-|++.+-+
T Consensus 255 KKLieplt~li~sT~---AmSLlYECvNTVVa~s~s~g~~d~~asiqLCvqKLr~fie---dsDqNLKYlgLlam~KI~k 328 (877)
T KOG1059|consen 255 KKLIEPITELMESTV---AMSLLYECVNTVVAVSMSSGMSDHSASIQLCVQKLRIFIE---DSDQNLKYLGLLAMSKILK 328 (877)
T ss_pred hhhhhHHHHHHHhhH---HHHHHHHHHHHheeehhccCCCCcHHHHHHHHHHHhhhhh---cCCccHHHHHHHHHHHHhh
Q ss_pred HHhhHhhcCHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhccCcchHHHHHHHHHHH
Q 001448 136 QFGRRITSGLLETTIIAAKLMKFNEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVDKSFVVRIAGARCLK 215 (1075)
Q Consensus 136 ~~G~~l~s~~~e~~~~llK~lK~~~~~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~ 215 (1075)
+|-+.+...-.. ++|.|-.-..-.|..++.+|..++. +.=.++|-|..+++...-....-|---.--..
T Consensus 329 tHp~~Vqa~kdl----IlrcL~DkD~SIRlrALdLl~gmVs-------kkNl~eIVk~LM~~~~~ae~t~yrdell~~II 397 (877)
T KOG1059|consen 329 THPKAVQAHKDL----ILRCLDDKDESIRLRALDLLYGMVS-------KKNLMEIVKTLMKHVEKAEGTNYRDELLTRII 397 (877)
T ss_pred hCHHHHHHhHHH----HHHHhccCCchhHHHHHHHHHHHhh-------hhhHHHHHHHHHHHHHhccchhHHHHHHHHHH
Q ss_pred HHHhhcCCCcccchhhhHhhHHh
Q 001448 216 AFAHIGGPCLGVGELDNSATHCV 238 (1075)
Q Consensus 216 ~l~~~~~~~~~~~dlE~l~sl~~ 238 (1075)
.+-... .|.+-+|||+..++..
T Consensus 398 ~iCS~s-nY~~ItdFEWYlsVlv 419 (877)
T KOG1059|consen 398 SICSQS-NYQYITDFEWYLSVLV 419 (877)
T ss_pred HHhhhh-hhhhhhhHHHHHHHHH
No 100
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=73.23 E-value=13 Score=42.72 Aligned_cols=92 Identities=28% Similarity=0.244 Sum_probs=69.0
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhcCCCc
Q 001448 146 LETTIIAAKLMKFNEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGGPCL 225 (1075)
Q Consensus 146 ~e~~~~llK~lK~~~~~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~~~~~ 225 (1075)
++++..+.+.++..+..+|..+...+.. .| ++.....+.+ .+.|.+..||..|+.+|..+-.
T Consensus 42 ~~~~~~~~~~l~~~~~~vr~~aa~~l~~----~~---~~~av~~l~~-----~l~d~~~~vr~~a~~aLg~~~~------ 103 (335)
T COG1413 42 PEAADELLKLLEDEDLLVRLSAAVALGE----LG---SEEAVPLLRE-----LLSDEDPRVRDAAADALGELGD------ 103 (335)
T ss_pred hhhHHHHHHHHcCCCHHHHHHHHHHHhh----hc---hHHHHHHHHH-----HhcCCCHHHHHHHHHHHHccCC------
Confidence 6789999999998888999998887333 33 2344555444 3889999999999997755543
Q ss_pred ccchhhhHhhHHhhhcc-CCChhHHHHHHHHHHHHH
Q 001448 226 GVGELDNSATHCVKAIE-DPIASVRDAFAEALGSLL 260 (1075)
Q Consensus 226 ~~~dlE~l~sl~~K~le-~s~~~vR~a~A~~La~lL 260 (1075)
+.......+.++ +.|..||..++..||.+-
T Consensus 104 -----~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~ 134 (335)
T COG1413 104 -----PEAVPPLVELLENDENEGVRAAAARALGKLG 134 (335)
T ss_pred -----hhHHHHHHHHHHcCCcHhHHHHHHHHHHhcC
Confidence 244555566666 799999999999999865
No 101
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=72.95 E-value=71 Score=39.75 Aligned_cols=107 Identities=14% Similarity=0.059 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHHHhhHhhcCHHHHHHHHHHHhcc---CcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhc
Q 001448 123 VAGAAQCLGELYRQFGRRITSGLLETTIIAAKLMKF---NEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAI 199 (1075)
Q Consensus 123 ~~aA~~cLG~l~~~~G~~l~s~~~e~~~~llK~lK~---~~~~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~ 199 (1075)
+..++..|| .+| .+.++..+.+.+.. .+..+|..++.+|+++..... ..+..-+++ +++ -
T Consensus 463 ~~~~LkaLG--------N~g--~~~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p----~~v~~~l~~-i~~--n 525 (574)
T smart00638 463 IQLYLKALG--------NAG--HPSSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDP----RKVQEVLLP-IYL--N 525 (574)
T ss_pred eeeHHHhhh--------ccC--ChhHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCc----hHHHHHHHH-HHc--C
Confidence 346777777 443 46677777777763 456899999999998766333 222222333 332 1
Q ss_pred cCcchHHHHHHHHHHHHHHhhcCCCcccchhhhHhhHHhhhccCCChhHHHHHHHH
Q 001448 200 VDKSFVVRIAGARCLKAFAHIGGPCLGVGELDNSATHCVKAIEDPIASVRDAFAEA 255 (1075)
Q Consensus 200 ~Dks~~Vr~aAa~cL~~l~~~~~~~~~~~dlE~l~sl~~K~le~s~~~vR~a~A~~ 255 (1075)
.+....||+||.-.| .... .+.+.+..+.-..-.++|.+|+..+-..
T Consensus 526 ~~e~~EvRiaA~~~l---m~t~------P~~~~l~~ia~~l~~E~~~QV~sfv~S~ 572 (574)
T smart00638 526 RAEPPEVRMAAVLVL---METK------PSVALLQRIAELLNKEPNLQVASFVYSH 572 (574)
T ss_pred CCCChHHHHHHHHHH---HhcC------CCHHHHHHHHHHHhhcCcHHHHHHhHHh
Confidence 457788999997543 2221 1223344444444457788898876544
No 102
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=71.50 E-value=24 Score=34.07 Aligned_cols=70 Identities=17% Similarity=0.193 Sum_probs=52.5
Q ss_pred CcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhcCCCcccchhhhHhhH
Q 001448 159 NEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGGPCLGVGELDNSATH 236 (1075)
Q Consensus 159 ~~~~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~~~~~~~~dlE~l~sl 236 (1075)
.+..-|..++++++.+++ +|++.-..+.-.|-- ..++++..+ ..|..|++||..+++.- ...|++.+...
T Consensus 27 ~~~~ek~~~l~si~~lI~-~~~~~i~~~~pQI~a-~L~sal~~~--~l~~~al~~W~~fi~~L----~~~~l~~ll~~ 96 (107)
T PF08064_consen 27 KPIPEKKRALRSIEELIK-LGGSHISSARPQIMA-CLQSALEIP--ELREEALSCWNCFIKTL----DEEDLGPLLDQ 96 (107)
T ss_pred CCHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHH-HHHHHhCCh--hhHHHHHHHHHHHHHHC----CHHHHHHHHHH
Confidence 567789999999999999 444443466777777 688888777 89999999999999863 33565554443
No 103
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.34 E-value=3.1e+02 Score=35.40 Aligned_cols=164 Identities=19% Similarity=0.213 Sum_probs=103.2
Q ss_pred HHHHHHHHHHhhcCCChhHhHHHHHHHHHHhccC-CchhhHHhHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHhhHh
Q 001448 63 RKCEDALYSLLILGARRPVRHLASVAMGRIISKG-DNISVYSRVSSLQGFLSDGKKSEPQKVAGAAQCLGELYRQFGRRI 141 (1075)
Q Consensus 63 ~~l~~~L~~ll~~~~g~P~R~l~a~cl~~ly~~G-D~~~lf~~vn~l~~~l~~~k~~s~~~~~aA~~cLG~l~~~~G~~l 141 (1075)
|.+-.++.++++. +-|-+||=.+-|..++..+- |--..| ++.....|. +...-..++.++.+.+|-+.=-+.+
T Consensus 141 rdlapeVe~Ll~~-~~~~irKKA~Lca~r~irK~P~l~e~f--~~~~~~lL~---ek~hGVL~~~l~l~~e~c~~~~~~l 214 (866)
T KOG1062|consen 141 RDLAPEVERLLQH-RDPYIRKKAALCAVRFIRKVPDLVEHF--VIAFRKLLC---EKHHGVLIAGLHLITELCKISPDAL 214 (866)
T ss_pred HHhhHHHHHHHhC-CCHHHHHHHHHHHHHHHHcCchHHHHh--hHHHHHHHh---hcCCceeeeHHHHHHHHHhcCHHHH
Confidence 3344455555555 77888999999999998862 222222 456666665 3345566788888888887644444
Q ss_pred hcCHHHHHHHHHHHhcc---------------CcHHHHHHHHHHHHHHHhcCCCCC--chhHHHHHHHHHHHHhccCcch
Q 001448 142 TSGLLETTIIAAKLMKF---------------NEEFVRQEALLLLQNALEGSGGSA--AASAYSEAFRLIMRFAIVDKSF 204 (1075)
Q Consensus 142 ~s~~~e~~~~llK~lK~---------------~~~~~R~~~l~~L~kil~g~g~~~--~~~~~~di~K~~~r~~~~Dks~ 204 (1075)
+.|.+.+..+++.+|+ ..+.+-..+++.|+= +|... ....--||.-++++- +|.+.
T Consensus 215 -~~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLri----LGq~d~daSd~M~DiLaqvatn--tdssk 287 (866)
T KOG1062|consen 215 -SYFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRI----LGQNDADASDLMNDILAQVATN--TDSSK 287 (866)
T ss_pred -HHHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHH----hcCCCccHHHHHHHHHHHHHhc--ccccc
Confidence 7788899999999986 256788888887764 34322 233455666655554 34444
Q ss_pred HHHHHH-HHHHHHHHhhcCCCcccchhhhHhhHHhhhccCCChhHHHHHHHHHHHHHH
Q 001448 205 VVRIAG-ARCLKAFAHIGGPCLGVGELDNSATHCVKAIEDPIASVRDAFAEALGSLLA 261 (1075)
Q Consensus 205 ~Vr~aA-a~cL~~l~~~~~~~~~~~dlE~l~sl~~K~le~s~~~vR~a~A~~La~lLa 261 (1075)
.|=-|- -+|..-+... .+|...|..++.+||.+|.
T Consensus 288 N~GnAILYE~V~TI~~I----------------------~~~~~LrvlainiLgkFL~ 323 (866)
T KOG1062|consen 288 NAGNAILYECVRTIMDI----------------------RSNSGLRVLAINILGKFLL 323 (866)
T ss_pred cchhHHHHHHHHHHHhc----------------------cCCchHHHHHHHHHHHHhc
Confidence 333222 2333222221 1466799999999999983
No 104
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=70.57 E-value=1.2e+02 Score=39.00 Aligned_cols=136 Identities=18% Similarity=0.146 Sum_probs=91.5
Q ss_pred HHHHHHHHHhcccccCCCcchhHHHHHHHHHhccCCCCCHHH-HHHHHHHHHHhhhccCChHHHHHHHHHHHhhcccCCC
Q 001448 313 LSWVYFLQAIRLKYFHPDSELQDYALQVMDMLRADIFVDSHA-LACVLYILRIGVTDQMTEPTQRSFLVFLGKQLQAVDA 391 (1075)
Q Consensus 313 ~ayv~fl~~lg~~wle~~~~~~~~~~~i~~ll~~~~~~~~~~-r~~v~~ILr~~v~~~L~E~~Q~~~~~~l~~~~~~~~~ 391 (1075)
+|....++.|- .. + .++-|..+|+..+. +-|..- |=|=-|+.+ -...-..-++.++..+.|.+ .++
T Consensus 38 dAmK~iIa~M~---~G-~-dmssLf~dViK~~~---trd~ElKrL~ylYl~~---yak~~P~~~lLavNti~kDl--~d~ 104 (757)
T COG5096 38 DAMKKIIAQMS---LG-E-DMSSLFPDVIKNVA---TRDVELKRLLYLYLER---YAKLKPELALLAVNTIQKDL--QDP 104 (757)
T ss_pred HHHHHHHHHHh---cC-C-ChHHHHHHHHHHHH---hcCHHHHHHHHHHHHH---HhccCHHHHHHHHHHHHhhc--cCC
Confidence 45566666642 11 2 35666656665554 223333 445555543 22333444577778887766 567
Q ss_pred ChhHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHhCCcchhhH-HHHHHHHHH
Q 001448 392 SPFMKIAALRTLSYTLKTLGEVPSEFKEVLDSTVVAAVSHSSQLVRIEAALTLRALAEVDPTCVSGL-ITYGVTTLN 467 (1075)
Q Consensus 392 s~~~lv~aL~el~~Ll~~LGsa~~~~~~~l~d~L~~lL~hps~svRi~AA~cLr~~~~a~Ps~l~~l-l~~~~~~L~ 467 (1075)
|+..=-+||+.++.+ -.+++.+.+.+++.+++.||+..||=.||.|+..+=...|.....+ .......|-
T Consensus 105 N~~iR~~AlR~ls~l------~~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l~~~~g~~~~l~~l~ 175 (757)
T COG5096 105 NEEIRGFALRTLSLL------RVKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDLYHELGLIDILKELV 175 (757)
T ss_pred CHHHHHHHHHHHHhc------ChHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhhhhcccHHHHHHHHh
Confidence 777778888887654 2357899999999999999999999999999999998888877776 554444443
No 105
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=68.82 E-value=3.1e+02 Score=34.37 Aligned_cols=219 Identities=16% Similarity=0.141 Sum_probs=126.2
Q ss_pred HHHHHHHhccCChhhHHHHHHHHHHHHHHHhhcCCChhHhHHHHHHHHHHhccCCchhhHHhHHHHHHhhhcCCCCChhh
Q 001448 43 LSDLISAIDEEPKESILLWQRKCEDALYSLLILGARRPVRHLASVAMGRIISKGDNISVYSRVSSLQGFLSDGKKSEPQK 122 (1075)
Q Consensus 43 L~~L~~~l~~~~k~di~~~Q~~l~~~L~~ll~~~~g~P~R~l~a~cl~~ly~~GD~~~lf~~vn~l~~~l~~~k~~s~~~ 122 (1075)
...|.+.+..++.+++++.=+++...- -..-.|+.+-.+|+..- .. ..+..+.++|. +++.++..
T Consensus 349 f~~Lv~~lr~l~~~~L~~l~~~~~~~~-------~~~~~r~~~lDal~~aG---T~----~av~~i~~~I~-~~~~~~~e 413 (618)
T PF01347_consen 349 FSRLVRLLRTLSYEDLEELYKQLKSKS-------KKEQARKIFLDALPQAG---TN----PAVKFIKDLIK-SKKLTDDE 413 (618)
T ss_dssp HHHHHHHHTTS-HHHHHHHHHHHTTS----------HHHHHHHHHHHHHH----SH----HHHHHHHHHHH-TT-S-HHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhc-------cHHHHHHHHHHHHHHcC---CH----HHHHHHHHHHH-cCCCCHHH
Confidence 566788888889888776544332211 23345888888877753 33 35667888887 33433332
Q ss_pred HHHHHHHHHHHHHHHhhHhhcCHHHHHHHHHHHhcc----CcHHHHHHHHHHHHHHHhcCCCC-------------Cchh
Q 001448 123 VAGAAQCLGELYRQFGRRITSGLLETTIIAAKLMKF----NEEFVRQEALLLLQNALEGSGGS-------------AAAS 185 (1075)
Q Consensus 123 ~~aA~~cLG~l~~~~G~~l~s~~~e~~~~llK~lK~----~~~~~R~~~l~~L~kil~g~g~~-------------~~~~ 185 (1075)
. . +++..++..+..-..+++..++.++|. ++..+|..++.++..++...-.. ..+.
T Consensus 414 a---~----~~l~~l~~~~~~Pt~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~ 486 (618)
T PF01347_consen 414 A---A----QLLASLPFHVRRPTEELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEK 486 (618)
T ss_dssp H---H----HHHHHHHHT-----HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GG
T ss_pred H---H----HHHHHHHhhcCCCCHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHH
Confidence 2 1 344444556657788999999999985 56789999999999888765433 1223
Q ss_pred HHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhcCCCcccchhhhHhhHHhhhccCC---ChhHHHHHHHHHHHHHHh
Q 001448 186 AYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGGPCLGVGELDNSATHCVKAIEDP---IASVRDAFAEALGSLLAL 262 (1075)
Q Consensus 186 ~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~~~~~~~~dlE~l~sl~~K~le~s---~~~vR~a~A~~La~lLa~ 262 (1075)
+.+.+.+ ..+.+.++++...+..+.+.|+.+... .......+.+++. +..+|.++..+|..+.
T Consensus 487 ~~~~l~~-~l~~~~~~~~~~~~~~~LkaLgN~g~~-----------~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~-- 552 (618)
T PF01347_consen 487 YVPYLEQ-ELKEAVSRGDEEEKIVYLKALGNLGHP-----------ESIPVLLPYIEGKEEVPHFIRVAAIQALRRLA-- 552 (618)
T ss_dssp GTHHHHH-HHHHHHHTT-HHHHHHHHHHHHHHT-G-----------GGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGG--
T ss_pred HHHHHHH-HHHHHhhccCHHHHHHHHHHhhccCCc-----------hhhHHHHhHhhhccccchHHHHHHHHHHHHHh--
Confidence 4444444 466667778888888888888766542 4555666666666 6667776655554331
Q ss_pred ccCCCCcCCCCCCCCCCCCCChhHHHHHHhhhhhcccCCCCcchhHHHHHHHHHHHHHH
Q 001448 263 GMNPQAQVQPKGKGPFPPAKKLEGGLQRHLALPFTRANGAKSKNMRVNLTLSWVYFLQA 321 (1075)
Q Consensus 263 ~~~~~~~~~~~~k~~~~~~k~l~~~l~~~Ls~~f~k~~~~~~r~~R~Gv~~ayv~fl~~ 321 (1075)
. .-++.....|...|...+- .-|+|++ ||..++..
T Consensus 553 ----~---------------~~~~~v~~~l~~I~~n~~e--~~EvRia---A~~~lm~~ 587 (618)
T PF01347_consen 553 ----K---------------HCPEKVREILLPIFMNTTE--DPEVRIA---AYLILMRC 587 (618)
T ss_dssp ----G---------------T-HHHHHHHHHHHHH-TTS---HHHHHH---HHHHHHHT
T ss_pred ----h---------------cCcHHHHHHHHHHhcCCCC--ChhHHHH---HHHHHHhc
Confidence 0 1232223366667776665 6789986 45555544
No 106
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.78 E-value=3.5e+02 Score=34.57 Aligned_cols=219 Identities=15% Similarity=0.104 Sum_probs=132.7
Q ss_pred cCCCCchhHHHHHHHHHHHhc------------------cCChhhHHHHHHHHHHHHHHHhhcC---------CChhHhH
Q 001448 31 QQSPDPLLCFDLLSDLISAID------------------EEPKESILLWQRKCEDALYSLLILG---------ARRPVRH 83 (1075)
Q Consensus 31 ~~~~~~~~~~~wL~~L~~~l~------------------~~~k~di~~~Q~~l~~~L~~ll~~~---------~g~P~R~ 83 (1075)
|+.||-+-.=+|.+.....|. .-.+++-|.+-...+..|.++.... -+-|.=+
T Consensus 177 r~spDl~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PW 256 (938)
T KOG1077|consen 177 RKSPDLVNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPW 256 (938)
T ss_pred hcCccccChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHHHHHHHHHHHHhhcccchhhceeecCCChH
Confidence 667787777788776555443 3345555666666667776655422 1223333
Q ss_pred H---HHHHHHHHhccCCchhhHHhHHHHHHhhhcCCCCCh-----hhHHHHHHHHHHHHHHHh-----hHhhcCHHHHHH
Q 001448 84 L---ASVAMGRIISKGDNISVYSRVSSLQGFLSDGKKSEP-----QKVAGAAQCLGELYRQFG-----RRITSGLLETTI 150 (1075)
Q Consensus 84 l---~a~cl~~ly~~GD~~~lf~~vn~l~~~l~~~k~~s~-----~~~~aA~~cLG~l~~~~G-----~~l~s~~~e~~~ 150 (1075)
| +-|.|-..=..-|..+.-..++-++.+|+ +.++.| ...-|-= +-+||..- +.=-..+.-.|+
T Consensus 257 L~vKl~rlLq~~p~~~D~~~r~~l~evl~~iLn-k~~~~~~~k~vq~~na~n---aVLFeaI~l~~h~D~e~~ll~~~~~ 332 (938)
T KOG1077|consen 257 LQVKLLRLLQIYPTPEDPSTRARLNEVLERILN-KAQEPPKSKKVQHSNAKN---AVLFEAISLAIHLDSEPELLSRAVN 332 (938)
T ss_pred HHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHh-ccccCccccchHhhhhHH---HHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 3 22333222234566666666667777776 222222 1111111 12333221 122234555667
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhcCCCcccchh
Q 001448 151 IAAKLMKFNEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGGPCLGVGEL 230 (1075)
Q Consensus 151 ~llK~lK~~~~~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~~~~~~~~dl 230 (1075)
.+-+.+-.-|.-.||-++..+.+.+. ++-+.| ..|.=-.+++.+--++|+..||.-|.+-|..+-.. ++.
T Consensus 333 ~Lg~fls~rE~NiRYLaLEsm~~L~s-s~~s~d--avK~h~d~Ii~sLkterDvSirrravDLLY~mcD~-------~Na 402 (938)
T KOG1077|consen 333 QLGQFLSHRETNIRYLALESMCKLAS-SEFSID--AVKKHQDTIINSLKTERDVSIRRRAVDLLYAMCDV-------SNA 402 (938)
T ss_pred HHHHHhhcccccchhhhHHHHHHHHh-ccchHH--HHHHHHHHHHHHhccccchHHHHHHHHHHHHHhch-------hhH
Confidence 77777777899999999999999887 354443 23332336777766799999999999999887765 344
Q ss_pred hhHhhHHhhhccCCChhHHHHHHHHHHHHHHhcc
Q 001448 231 DNSATHCVKAIEDPIASVRDAFAEALGSLLALGM 264 (1075)
Q Consensus 231 E~l~sl~~K~le~s~~~vR~a~A~~La~lLa~~~ 264 (1075)
..++.=.+..++.++|..|.-.+--.|-+ +-.+
T Consensus 403 k~IV~elLqYL~tAd~sireeivlKvAIL-aEKy 435 (938)
T KOG1077|consen 403 KQIVAELLQYLETADYSIREEIVLKVAIL-AEKY 435 (938)
T ss_pred HHHHHHHHHHHhhcchHHHHHHHHHHHHH-HHHh
Confidence 56777788899999999999887766543 3434
No 107
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=66.44 E-value=1.1e+02 Score=31.70 Aligned_cols=117 Identities=11% Similarity=0.001 Sum_probs=82.1
Q ss_pred hHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHhhHhh-cCHHHHHHHHHHHhccC-cHHHHHHHHHHHHHHHhcCCCC
Q 001448 104 RVSSLQGFLSDGKKSEPQKVAGAAQCLGELYRQFGRRIT-SGLLETTIIAAKLMKFN-EEFVRQEALLLLQNALEGSGGS 181 (1075)
Q Consensus 104 ~vn~l~~~l~~~k~~s~~~~~aA~~cLG~l~~~~G~~l~-s~~~e~~~~llK~lK~~-~~~~R~~~l~~L~kil~g~g~~ 181 (1075)
-+..++.+++ +| ++..|-++++.++.+.+.=|..+. +....-+..+++.+++. ...++..+..++.+++.-+++-
T Consensus 26 l~~ri~~LL~-s~--~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~ 102 (165)
T PF08167_consen 26 LVTRINSLLQ-SK--SAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGK 102 (165)
T ss_pred HHHHHHHHhC-CC--ChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 3445666665 33 455666788899999888754444 88899999999999885 5568899999999999988854
Q ss_pred CchhHHHHHHH----HHHHHhcc-CcchHHHHHHHHHHHHHHhhcCCCc
Q 001448 182 AAASAYSEAFR----LIMRFAIV-DKSFVVRIAGARCLKAFAHIGGPCL 225 (1075)
Q Consensus 182 ~~~~~~~di~K----~~~r~~~~-Dks~~Vr~aAa~cL~~l~~~~~~~~ 225 (1075)
- ...|++-- .+..+++. .+...+...+.++|..+....++-+
T Consensus 103 p--~l~Rei~tp~l~~~i~~ll~l~~~~~~~~~~l~~L~~ll~~~ptt~ 149 (165)
T PF08167_consen 103 P--TLTREIATPNLPKFIQSLLQLLQDSSCPETALDALATLLPHHPTTF 149 (165)
T ss_pred C--chHHHHhhccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHCCccc
Confidence 3 35666521 23444332 1226777888999999988754444
No 108
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.11 E-value=26 Score=42.82 Aligned_cols=193 Identities=13% Similarity=0.086 Sum_probs=123.0
Q ss_pred HHHHHHHHhhcCCChhHhHHHHHHHHHHhccCCchhhHHhHHHHHHhhhcC-CCCChhhHHHHHHHHHHHHHHHhhHhhc
Q 001448 65 CEDALYSLLILGARRPVRHLASVAMGRIISKGDNISVYSRVSSLQGFLSDG-KKSEPQKVAGAAQCLGELYRQFGRRITS 143 (1075)
Q Consensus 65 l~~~L~~ll~~~~g~P~R~l~a~cl~~ly~~GD~~~lf~~vn~l~~~l~~~-k~~s~~~~~aA~~cLG~l~~~~G~~l~s 143 (1075)
..+.|..+++..-+=+..|.+.-+|..+....+.-+-|+.|..+...|..- +.+++..+.-|+-.+..+ +-|..=..
T Consensus 195 ~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyL--sdg~ne~i 272 (514)
T KOG0166|consen 195 ALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYL--TDGSNEKI 272 (514)
T ss_pred chHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hcCChHHH
Confidence 345566666655555679999999999999999999999998877777521 355666654444444432 22211111
Q ss_pred C---HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhcc-CcchHHHHHHHHHHHHHHh
Q 001448 144 G---LLETTIIAAKLMKFNEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIV-DKSFVVRIAGARCLKAFAH 219 (1075)
Q Consensus 144 ~---~~e~~~~llK~lK~~~~~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~-Dks~~Vr~aAa~cL~~l~~ 219 (1075)
+ =...|.-+.+++...+..++.-++++++.|+.|...-...-+--.... .++..++ ...-.+|..||..+..+..
T Consensus 273 q~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~-~l~~ll~~s~~~~ikkEAcW~iSNItA 351 (514)
T KOG0166|consen 273 QMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALP-VLSNLLSSSPKESIKKEACWTISNITA 351 (514)
T ss_pred HHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHH-HHHHHhccCcchhHHHHHHHHHHHhhc
Confidence 1 123566677788888888999999999998886653222112222333 3555554 3333477777766666554
Q ss_pred hcCCC-cc-cchhhhHhhHHhhhccCCChhHHHHHHHHHHHHHHh
Q 001448 220 IGGPC-LG-VGELDNSATHCVKAIEDPIASVRDAFAEALGSLLAL 262 (1075)
Q Consensus 220 ~~~~~-~~-~~dlE~l~sl~~K~le~s~~~vR~a~A~~La~lLa~ 262 (1075)
.+ +. +. -=| .++.......++.+++.+|..+|-+++++.+.
T Consensus 352 G~-~~qiqaVid-a~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~ 394 (514)
T KOG0166|consen 352 GN-QEQIQAVID-ANLIPVLINLLQTAEFDIRKEAAWAISNLTSS 394 (514)
T ss_pred CC-HHHHHHHHH-cccHHHHHHHHhccchHHHHHHHHHHHhhccc
Confidence 21 10 10 001 15777888999999999999999999987643
No 109
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=64.51 E-value=51 Score=31.12 Aligned_cols=79 Identities=19% Similarity=0.140 Sum_probs=59.9
Q ss_pred HHHHHHHhhcccCCCChhHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHhCCcchh
Q 001448 377 SFLVFLGKQLQAVDASPFMKIAALRTLSYTLKTLGEVPSEFKEVLDSTVVAAVSHSSQLVRIEAALTLRALAEVDPTCVS 456 (1075)
Q Consensus 377 ~~~~~l~~~~~~~~~s~~~lv~aL~el~~Ll~~LGsa~~~~~~~l~d~L~~lL~hps~svRi~AA~cLr~~~~a~Ps~l~ 456 (1075)
+.++...+.+. ||-...=.-+|.+++.||.+=. .+....+.+.+.+++.|.||...|=+.|..+|-.++...|...-
T Consensus 3 ~~~~~al~~L~--dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~vl 79 (92)
T PF10363_consen 3 ETLQEALSDLN--DPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDEVL 79 (92)
T ss_pred HHHHHHHHHcc--CCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHHHH
Confidence 33444444443 3444577789999999999876 33344678899999999999999999999999999999987443
Q ss_pred hH
Q 001448 457 GL 458 (1075)
Q Consensus 457 ~l 458 (1075)
+.
T Consensus 80 ~~ 81 (92)
T PF10363_consen 80 PI 81 (92)
T ss_pred HH
Confidence 33
No 110
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=64.20 E-value=1.1e+02 Score=32.56 Aligned_cols=110 Identities=22% Similarity=0.129 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHhhcCCChhHhHHHHHHHHHHhccCCchhhHHhHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHhhH
Q 001448 61 WQRKCEDALYSLLILGARRPVRHLASVAMGRIISKGDNISVYSRVSSLQGFLSDGKKSEPQKVAGAAQCLGELYRQFGRR 140 (1075)
Q Consensus 61 ~Q~~l~~~L~~ll~~~~g~P~R~l~a~cl~~ly~~GD~~~lf~~vn~l~~~l~~~k~~s~~~~~aA~~cLG~l~~~~G~~ 140 (1075)
.|+++++=|- +...+..++|...-+.+..+-.-|=.-+.- .|-.+.++.. |.++..+.-|..++.+++++++.+
T Consensus 6 ~Qryl~~Il~--~~~~~~~~vr~~Al~~l~~il~qGLvnP~~-cvp~lIAL~t---s~~~~ir~~A~~~l~~l~eK~~s~ 79 (187)
T PF12830_consen 6 VQRYLKNILE--LCLSSDDSVRLAALQVLELILRQGLVNPKQ-CVPTLIALET---SPNPSIRSRAYQLLKELHEKHESL 79 (187)
T ss_pred HHHHHHHHHH--HHhCCCHHHHHHHHHHHHHHHhcCCCChHH-HHhHhhhhhC---CCChHHHHHHHHHHHHHHHHhHHH
Confidence 4777766664 567889999999999999999887555443 5666666664 556777778999999999999999
Q ss_pred hhcCHHHHHHHHHHHhcc---CcHH-H---HHHHHHHHHHHHh
Q 001448 141 ITSGLLETTIIAAKLMKF---NEEF-V---RQEALLLLQNALE 176 (1075)
Q Consensus 141 l~s~~~e~~~~llK~lK~---~~~~-~---R~~~l~~L~kil~ 176 (1075)
+-+.+.+.+...++.-+. +..+ . -.+.+..+-.+++
T Consensus 80 v~~~~~~gi~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~ 122 (187)
T PF12830_consen 80 VESRYSEGIRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLR 122 (187)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCccccccccchHHHHHHHHHHh
Confidence 999999999999998875 1111 1 4566666677766
No 111
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=62.79 E-value=1e+02 Score=41.44 Aligned_cols=123 Identities=16% Similarity=0.090 Sum_probs=81.6
Q ss_pred HHHHHHhhHhhcCHHHHHH---HHHHHhccCcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhccCcchHHHH
Q 001448 132 ELYRQFGRRITSGLLETTI---IAAKLMKFNEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVDKSFVVRI 208 (1075)
Q Consensus 132 ~l~~~~G~~l~s~~~e~~~---~llK~lK~~~~~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~Dks~~Vr~ 208 (1075)
++|.+.-..+++.+..+.+ .+++..+++|..+|+.+.+++.-+-+.+- -..+...+..+... +.|-+-.||.
T Consensus 798 ~vf~s~~~~m~s~l~~~~~~l~~l~~~~~s~~~a~r~~~ar~i~~~~k~~~----~e~m~~v~~~~~~l-l~~~~~~~~r 872 (1549)
T KOG0392|consen 798 EVFNSLAPLMHSFLHPLGSLLPRLFFFVRSIHIAVRYAAARCIGTMFKSAT----RETMATVINGFLPL-LGDLDKFVRR 872 (1549)
T ss_pred HHHHHHHHhhhhhhhhhhhhhhHHHHhcccchHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhhh-ccchhhHhhh
Confidence 3444444333344433444 45555667899999999999888666221 22444455544554 6788889999
Q ss_pred HHHHHHHHHHhhc-CCCcccchhhhHhhHHhhhccCCChhHHHHHHHHHHHHH
Q 001448 209 AGARCLKAFAHIG-GPCLGVGELDNSATHCVKAIEDPIASVRDAFAEALGSLL 260 (1075)
Q Consensus 209 aAa~cL~~l~~~~-~~~~~~~dlE~l~sl~~K~le~s~~~vR~a~A~~La~lL 260 (1075)
.++.|+..++... ..++.. =.=-++-..++-+.+.++.||.++.++++.+.
T Consensus 873 ~~a~e~~~~l~~~l~~~l~~-~~~Llv~pllr~msd~~d~vR~aat~~fa~li 924 (1549)
T KOG0392|consen 873 QGADELIELLDAVLMVGLVP-YNPLLVVPLLRRMSDQIDSVREAATKVFAKLI 924 (1549)
T ss_pred hhHHHHHHHHHHhhcccccc-cceeehhhhhcccccchHHHHHHHHHHHHHHh
Confidence 9999998887752 112210 00136778889999999999999999999987
No 112
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=61.56 E-value=4.1e+02 Score=33.25 Aligned_cols=139 Identities=17% Similarity=0.140 Sum_probs=85.7
Q ss_pred HhHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHhhHhhcCHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhcCCCCC
Q 001448 103 SRVSSLQGFLSDGKKSEPQKVAGAAQCLGELYRQFGRRITSGLLETTIIAAKLMKFNEEFVRQEALLLLQNALEGSGGSA 182 (1075)
Q Consensus 103 ~~vn~l~~~l~~~k~~s~~~~~aA~~cLG~l~~~~G~~l~s~~~e~~~~llK~lK~~~~~~R~~~l~~L~kil~g~g~~~ 182 (1075)
+...+-..||.+.|.+ +..+--|..-+...|+.| -++..+++.+.+.+..-.+..+|..+++.|-.+++..+.-.
T Consensus 20 ~~~~~y~~il~~~kg~-~k~K~Laaq~I~kffk~F----P~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v 94 (556)
T PF05918_consen 20 QHEEDYKEILDGVKGS-PKEKRLAAQFIPKFFKHF----PDLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHV 94 (556)
T ss_dssp GGHHHHHHHHHGGGS--HHHHHHHHHHHHHHHCC-----GGGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-H
T ss_pred cCHHHHHHHHHHccCC-HHHHHHHHHHHHHHHhhC----hhhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHH
Confidence 3445566677655553 444435777777777655 45678999999999999999999999999999999655322
Q ss_pred chhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhcCCCcccchhhhHhhHHhhhcc---CCChhHHHHHHHHHHHH
Q 001448 183 AASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGGPCLGVGELDNSATHCVKAIE---DPIASVRDAFAEALGSL 259 (1075)
Q Consensus 183 ~~~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~~~~~~~~dlE~l~sl~~K~le---~s~~~vR~a~A~~La~l 259 (1075)
. =..||.-+ .+.--......+.-++|..|++.. | ....+-.|+-++ +.+..+|.-+=+.|..=
T Consensus 95 ~--kvaDvL~Q----lL~tdd~~E~~~v~~sL~~ll~~d-~-------k~tL~~lf~~i~~~~~~de~~Re~~lkFl~~k 160 (556)
T PF05918_consen 95 S--KVADVLVQ----LLQTDDPVELDAVKNSLMSLLKQD-P-------KGTLTGLFSQIESSKSGDEQVRERALKFLREK 160 (556)
T ss_dssp H--HHHHHHHH----HTT---HHHHHHHHHHHHHHHHH--H-------HHHHHHHHHHHH---HS-HHHHHHHHHHHHHH
T ss_pred h--HHHHHHHH----HHhcccHHHHHHHHHHHHHHHhcC-c-------HHHHHHHHHHHHhcccCchHHHHHHHHHHHHH
Confidence 2 25566554 233333444455567888888862 2 245555666665 56788999877776654
Q ss_pred H
Q 001448 260 L 260 (1075)
Q Consensus 260 L 260 (1075)
+
T Consensus 161 l 161 (556)
T PF05918_consen 161 L 161 (556)
T ss_dssp G
T ss_pred H
Confidence 4
No 113
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=60.44 E-value=10 Score=28.94 Aligned_cols=29 Identities=24% Similarity=0.126 Sum_probs=26.3
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 001448 420 VLDSTVVAAVSHSSQLVRIEAALTLRALA 448 (1075)
Q Consensus 420 ~l~d~L~~lL~hps~svRi~AA~cLr~~~ 448 (1075)
+..+.|++++.+++..++-+|.|+|+.++
T Consensus 12 g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 12 GGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 36788999999999999999999999876
No 114
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=60.00 E-value=1.4e+02 Score=31.64 Aligned_cols=154 Identities=17% Similarity=0.084 Sum_probs=92.3
Q ss_pred cCCChhHhHHHHHHHHHHhccCCchhhHHhHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHhhHhhcCHHHHHHHHHH
Q 001448 75 LGARRPVRHLASVAMGRIISKGDNISVYSRVSSLQGFLSDGKKSEPQKVAGAAQCLGELYRQFGRRITSGLLETTIIAAK 154 (1075)
Q Consensus 75 ~~~g~P~R~l~a~cl~~ly~~GD~~~lf~~vn~l~~~l~~~k~~s~~~~~aA~~cLG~l~~~~G~~l~s~~~e~~~~llK 154 (1075)
.|.+-|.++-+++-+..=+... .-.++ .+..+.. .+....+..|+.+++...+.+.. +.+.-+-+
T Consensus 28 ~GV~~p~lr~lak~~~~~~~~~--~~~~~---l~~~L~~---~~~~E~~~la~~il~~~~~~~~~-------~~~~~~~~ 92 (213)
T PF08713_consen 28 LGVRTPDLRKLAKDIYKELKLS--EELYE---LADELWE---SGYREERYLALLILDKRRKKLTE-------EDLELLEK 92 (213)
T ss_dssp ----HHHHHHHHHHHHHHHCTS--HHHHH---HHHHHHC---SSCHHHHHHHHHHHHHCGGG--H-------HHHHHHHH
T ss_pred cCcCcHHHHHHHHHHHhhcccc--hHHHH---HHHHHcC---CchHHHHHHHHHHhHHHhhhhhH-------HHHHHHHH
Confidence 5677788888888777766655 22222 3444444 33456667788777754322111 13445555
Q ss_pred Hhcc--CcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhcCCCcccchhhh
Q 001448 155 LMKF--NEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGGPCLGVGELDN 232 (1075)
Q Consensus 155 ~lK~--~~~~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~~~~~~~~dlE~ 232 (1075)
+++. +-+.+=.-+...+.+++..- .+.+.. +..-..|.+.-+|++++-++..+.. ..++|.
T Consensus 93 ~~~~~~~W~~~D~~~~~~~~~~~~~~---------~~~~~~-~~~W~~s~~~w~rR~~~v~~~~~~~-------~~~~~~ 155 (213)
T PF08713_consen 93 WLPDIDNWATCDSLCSKLLGPLLKKH---------PEALEL-LEKWAKSDNEWVRRAAIVMLLRYIR-------KEDFDE 155 (213)
T ss_dssp CCCCCCCHHHHHHHTHHHHHHHHHHH---------GGHHHH-HHHHHHCSSHHHHHHHHHCTTTHGG-------GCHHHH
T ss_pred HhccCCcchhhhHHHHHHHHHHHHhh---------HHHHHH-HHHHHhCCcHHHHHHHHHHHHHHHH-------hcCHHH
Confidence 6654 33444444455555544311 223332 3333567789999999877644433 388899
Q ss_pred HhhHHhhhccCCChhHHHHHHHHHHHHH
Q 001448 233 SATHCVKAIEDPIASVRDAFAEALGSLL 260 (1075)
Q Consensus 233 l~sl~~K~le~s~~~vR~a~A~~La~lL 260 (1075)
+..+|-..+.++++.||.+++-+|.++.
T Consensus 156 ~l~~~~~~~~d~~~~vq~ai~w~L~~~~ 183 (213)
T PF08713_consen 156 LLEIIEALLKDEEYYVQKAIGWALREIG 183 (213)
T ss_dssp HHHHHHHCTTGS-HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCchHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998865
No 115
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=59.63 E-value=5.8e+02 Score=34.30 Aligned_cols=135 Identities=19% Similarity=0.097 Sum_probs=85.9
Q ss_pred CCCChhhHHHHHHHHHHHHHHHhhHhhcCHHHHHHHHHHHhcc----CcHHHHHHHHHHHHHHHhcCCCCCchhHHHHH-
Q 001448 116 KKSEPQKVAGAAQCLGELYRQFGRRITSGLLETTIIAAKLMKF----NEEFVRQEALLLLQNALEGSGGSAAASAYSEA- 190 (1075)
Q Consensus 116 k~~s~~~~~aA~~cLG~l~~~~G~~l~s~~~e~~~~llK~lK~----~~~~~R~~~l~~L~kil~g~g~~~~~~~~~di- 190 (1075)
+|-+|.+|+-++.-||.-++.+..-. .-...+|++-= .+.++|-..+++|.+....-. . -...+.+
T Consensus 297 RDV~~~IRaiCiqeLgiWi~~yP~~F------l~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~--~-~~~L~lFt 367 (1048)
T KOG2011|consen 297 RDVDPDIRAICIQELGIWIKSYPEIF------LSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDE--D-KDKLELFT 367 (1048)
T ss_pred ccCchHHHHHHHHHHHHHHHhccHHH------hcchHHHHhcceeecCccHHHHHHHHHHHHHHhccc--c-chHHHHHH
Confidence 57789999766666665555443332 12346776652 689999999999999998722 1 1122222
Q ss_pred --HH-HHHHHhccCcchHHHHHHHHHHHHHHhhcCCCcccchhhhHhhHHhhhccCCChhHHHHHHHHHHHHHHhccC
Q 001448 191 --FR-LIMRFAIVDKSFVVRIAGARCLKAFAHIGGPCLGVGELDNSATHCVKAIEDPIASVRDAFAEALGSLLALGMN 265 (1075)
Q Consensus 191 --~K-~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~~~~~~~~dlE~l~sl~~K~le~s~~~vR~a~A~~La~lLa~~~~ 265 (1075)
|| .+..-+--|.+..||.++...+..+... .++.-.|.+.+-.+++ +++..+|.++..-+-.-+.....
T Consensus 368 sRFK~RIVeMadrd~~~~Vrav~L~~~~~~~~~--g~L~d~di~~Vy~Li~----d~~r~~~~aa~~fl~~k~~~~~a 439 (1048)
T KOG2011|consen 368 SRFKDRIVEMADRDRNVSVRAVGLVLCLLLSSS--GLLSDKDILIVYSLIY----DSNRRVAVAAGEFLYKKLFERVA 439 (1048)
T ss_pred HHHHHHHHHHHhhhcchhHHHHHHHHHHHHhcc--cccChhHHHHHHHHHh----ccCcchHHHHHHHHHHHhhcccc
Confidence 44 3333333456678888885544444443 3678888887766654 77888999887777666644443
No 116
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=59.44 E-value=4.5e+02 Score=32.99 Aligned_cols=160 Identities=14% Similarity=0.092 Sum_probs=91.2
Q ss_pred hhHhHHHHHHHHHHhccCCchhhHHhHHHHHHhhhcCCC-CChhhHHHHHHHHHHHHH-HHhh-Hh-hcCHHHHHHHHHH
Q 001448 79 RPVRHLASVAMGRIISKGDNISVYSRVSSLQGFLSDGKK-SEPQKVAGAAQCLGELYR-QFGR-RI-TSGLLETTIIAAK 154 (1075)
Q Consensus 79 ~P~R~l~a~cl~~ly~~GD~~~lf~~vn~l~~~l~~~k~-~s~~~~~aA~~cLG~l~~-~~G~-~l-~s~~~e~~~~llK 154 (1075)
.--|+.+|.-+--.|..|=..-.-..| +.+|. -|| .+.--| -+.-|...|+ .+-+ -= .....-++-.++|
T Consensus 25 aGhrk~~a~l~~~~t~~~f~~~flr~v---n~IL~-~Kk~~si~dR--il~fl~~f~~Y~~~~dpeg~~~V~~~~~h~lR 98 (885)
T COG5218 25 AGHRKSLAELMEMLTAHEFSEEFLRVV---NTILA-CKKNPSIPDR--ILSFLKRFFEYDMPDDPEGEELVAGTFYHLLR 98 (885)
T ss_pred hhHHHHHHHHHHHHHHHhhHHHHHHHH---HHhhc-cccCCCcHHH--HHHHHHHHHHhcCCCChhhhHHHHHHHHHHHh
Confidence 334999999998888776554444433 44443 333 332222 1222333333 1111 11 1112223333444
Q ss_pred HhccCcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhcCCCcccchhhhHh
Q 001448 155 LMKFNEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGGPCLGVGELDNSA 234 (1075)
Q Consensus 155 ~lK~~~~~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~~~~~~~~dlE~l~ 234 (1075)
...+..-.+|+-.++.|+-+...+|. +|+..+--+... ...-+-||...||.-|..||..+..-+ .+=|+-.
T Consensus 99 g~eskdk~VR~r~lqila~~~d~v~e-IDe~l~N~L~ek-l~~R~~DRE~~VR~eAv~~L~~~Qe~~------~neen~~ 170 (885)
T COG5218 99 GTESKDKKVRKRSLQILALLSDVVRE-IDEVLANGLLEK-LSERLFDREKAVRREAVKVLCYYQEME------LNEENRI 170 (885)
T ss_pred cccCcchhHHHHHHHHHHHHHHhcch-HHHHHHHHHHHH-HHHHHhcchHHHHHHHHHHHHHHHhcc------CChHHHH
Confidence 44445678999999999999988884 555554433322 233367999999999999997776432 2224433
Q ss_pred hHHhhhc--cCCChhHHHHH
Q 001448 235 THCVKAI--EDPIASVRDAF 252 (1075)
Q Consensus 235 sl~~K~l--e~s~~~vR~a~ 252 (1075)
.-.+|++ .+|+++||+++
T Consensus 171 ~n~l~~~vqnDPS~EVRr~a 190 (885)
T COG5218 171 VNLLKDIVQNDPSDEVRRLA 190 (885)
T ss_pred HHHHHHHHhcCcHHHHHHHH
Confidence 3344443 56889999965
No 117
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=59.28 E-value=4.5e+02 Score=32.91 Aligned_cols=182 Identities=13% Similarity=0.009 Sum_probs=116.9
Q ss_pred cCCChhHhHHHHHHHHHHhccCCchhhHHhHHHHHHhhhcCC-CCChh-hHHHHHHHHHHHHHHHhh-HhhcCHHHHHHH
Q 001448 75 LGARRPVRHLASVAMGRIISKGDNISVYSRVSSLQGFLSDGK-KSEPQ-KVAGAAQCLGELYRQFGR-RITSGLLETTII 151 (1075)
Q Consensus 75 ~~~g~P~R~l~a~cl~~ly~~GD~~~lf~~vn~l~~~l~~~k-~~s~~-~~~aA~~cLG~l~~~~G~-~l~s~~~e~~~~ 151 (1075)
.+|-|-.-+..|..++.|=.--=.-++|. .+...+.++- +..|. -+-.++..+|.+-++-.. -+.+.+..++..
T Consensus 104 ~s~epr~~~~Aaql~aaIA~~Elp~~~wp---~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~Pe~li~~sN~il~a 180 (858)
T COG5215 104 KSPEPRFCTMAAQLLAAIARMELPNSLWP---GLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAPEDLIQMSNVILFA 180 (858)
T ss_pred cCCccHHHHHHHHHHHHHHHhhCccccch---HHHHHHHHhccccCchHhHHHHHHHHHHHhhccCHHHHHHHhhHHHHH
Confidence 55666668889999998876544555555 3333333222 33453 233688888988887765 566666666666
Q ss_pred HHHHhccC--cHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhcCCCcccch
Q 001448 152 AAKLMKFN--EEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGGPCLGVGE 229 (1075)
Q Consensus 152 llK~lK~~--~~~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~~~~~~~~d 229 (1075)
+.-.-.++ .+.+|-+++.+|-.-+.-+.+-..-.--|..+-++.=-+.+-.+..++.+|..||-.+..-...|+. +=
T Consensus 181 iv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~-~y 259 (858)
T COG5215 181 IVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQ-SY 259 (858)
T ss_pred HHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 65544443 5679999999998866544432211122333333333445567788999999999776553223332 44
Q ss_pred hhh-HhhHHhhhccCCChhHHHHHHHHHHHHH
Q 001448 230 LDN-SATHCVKAIEDPIASVRDAFAEALGSLL 260 (1075)
Q Consensus 230 lE~-l~sl~~K~le~s~~~vR~a~A~~La~lL 260 (1075)
+|+ +..+--+++.+.|++|-.-+-+-++.+.
T Consensus 260 mE~aL~alt~~~mks~nd~va~qavEfWstic 291 (858)
T COG5215 260 MENALAALTGRFMKSQNDEVAIQAVEFWSTIC 291 (858)
T ss_pred HHHHHHHHHHHHhcCcchHHHHHHHHHHHHHH
Confidence 555 7778888888999888888888777765
No 118
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=59.20 E-value=5.6e+02 Score=34.00 Aligned_cols=122 Identities=18% Similarity=0.116 Sum_probs=83.1
Q ss_pred ChhHHHHHHHHHHHHHHHhCCCch---hhHHHHHHHHHHHhcCCChHHHHHHHHHHHHHH-H--hCCcchhhHHHHHHHH
Q 001448 392 SPFMKIAALRTLSYTLKTLGEVPS---EFKEVLDSTVVAAVSHSSQLVRIEAALTLRALA-E--VDPTCVSGLITYGVTT 465 (1075)
Q Consensus 392 s~~~lv~aL~el~~Ll~~LGsa~~---~~~~~l~d~L~~lL~hps~svRi~AA~cLr~~~-~--a~Ps~l~~ll~~~~~~ 465 (1075)
++-.-=.||+.+|+|..-|-..++ ..-.-+..-++..+..|.-..|-.|.|.+..|+ . ..|..+.+.++....+
T Consensus 431 ~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~~~~~df~d~~~l~~ale~t~~~ 510 (1010)
T KOG1991|consen 431 NPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQFSSIDFKDPNNLSEALELTHNC 510 (1010)
T ss_pred ChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHH
Confidence 445567799999999988876543 333446777788889999999999999999999 3 4466777788777777
Q ss_pred HHhhhhhcccccCCcccchhhhhchHHHHHHHHHhhcCCCCCccCCchhHHHHHHHHHhhhccCC
Q 001448 466 LNALRENVSFEKGSSLMVELDSLHGQATVVAALIFISPKLPLGYPARLPKLVLEVSKKMLTESSR 530 (1075)
Q Consensus 466 L~~~~~~l~~~~~~~~~~~~~~~~G~a~aLAALl~~~~~~pLgvp~~~~~~V~~~A~~LLk~~~~ 530 (1075)
|..+++ -|.+ .--|+||-.+|+.-+..+=++.- -|-.+-++|||=+..
T Consensus 511 l~~d~~------------lPV~-VeAalALq~fI~~~~~~~e~~~~----hvp~~mq~lL~L~ne 558 (1010)
T KOG1991|consen 511 LLNDNE------------LPVR-VEAALALQSFISNQEQADEKVSA----HVPPIMQELLKLSNE 558 (1010)
T ss_pred hccCCc------------Cchh-hHHHHHHHHHHhcchhhhhhHhh----hhhHHHHHHHHHHHh
Confidence 765321 1344 34578888888877655333322 233344566665543
No 119
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=58.61 E-value=2.1e+02 Score=33.45 Aligned_cols=175 Identities=13% Similarity=0.066 Sum_probs=100.7
Q ss_pred hhHhHHHHHHHHHHh-----ccCCchhhHHhHHH-HHHhhhcCCCCChhhHHHHHHHHHHHHHHHh--hHhhcCHHHHHH
Q 001448 79 RPVRHLASVAMGRII-----SKGDNISVYSRVSS-LQGFLSDGKKSEPQKVAGAAQCLGELYRQFG--RRITSGLLETTI 150 (1075)
Q Consensus 79 ~P~R~l~a~cl~~ly-----~~GD~~~lf~~vn~-l~~~l~~~k~~s~~~~~aA~~cLG~l~~~~G--~~l~s~~~e~~~ 150 (1075)
.|.|+...+.|.... .+++....-+.... ....++ .-..++..+..|+.-|-++-+..- -++.+.-. ..
T Consensus 51 ke~~k~~~e~~~~~~e~~k~~~~~~~~~~~~~~~~~~~~~~-~~s~~le~ke~ald~Le~lve~iDnAndl~~~gg--l~ 127 (342)
T KOG2160|consen 51 KEDRKWLQELMQAHTEDQKDFVEDMKVISDVMSMIPIVILN-SSSVDLEDKEDALDNLEELVEDIDNANDLISLGG--LV 127 (342)
T ss_pred ccchHHHHHHHHHhhhhhhhhcccchhHHHHHHhhhhhccC-cccCCHHHHHHHHHHHHHHHHhhhhHHhHhhccC--HH
Confidence 555666666665554 22333322222222 122222 123356777889999888887554 33333222 12
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhcCC----Ccc
Q 001448 151 IAAKLMKFNEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGGP----CLG 226 (1075)
Q Consensus 151 ~llK~lK~~~~~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~~~----~~~ 226 (1075)
.++..+++.++.+|..++..++.++.+-..+-..-+=.+..+..++...+|.+..||..|.-.+..+.++-.| |+.
T Consensus 128 ~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~ 207 (342)
T KOG2160|consen 128 PLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLK 207 (342)
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHh
Confidence 2445999999999999999999999865532211111222233444445789999999997777778876311 223
Q ss_pred cchhhhHhhHHhhhccCC--ChhHHHHHHHHHHHHH
Q 001448 227 VGELDNSATHCVKAIEDP--IASVRDAFAEALGSLL 260 (1075)
Q Consensus 227 ~~dlE~l~sl~~K~le~s--~~~vR~a~A~~La~lL 260 (1075)
.+.+. ..-+++++. +...++-+.-+++.++
T Consensus 208 ~~G~~----~L~~vl~~~~~~~~lkrK~~~Ll~~Ll 239 (342)
T KOG2160|consen 208 LNGYQ----VLRDVLQSNNTSVKLKRKALFLLSLLL 239 (342)
T ss_pred cCCHH----HHHHHHHcCCcchHHHHHHHHHHHHHH
Confidence 33333 344667774 4445566677777766
No 120
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=58.58 E-value=3.6e+02 Score=35.61 Aligned_cols=139 Identities=18% Similarity=0.177 Sum_probs=94.1
Q ss_pred hhHhHHHHHHHHHHhccCCchhhHHhHHHHHHhhhcCCCC-----ChhhHHHHHHHHHHHHHHHhhHhh--cCHHH-HHH
Q 001448 79 RPVRHLASVAMGRIISKGDNISVYSRVSSLQGFLSDGKKS-----EPQKVAGAAQCLGELYRQFGRRIT--SGLLE-TTI 150 (1075)
Q Consensus 79 ~P~R~l~a~cl~~ly~~GD~~~lf~~vn~l~~~l~~~k~~-----s~~~~~aA~~cLG~l~~~~G~~l~--s~~~e-~~~ 150 (1075)
.-.+-....|+..+=++--...+--.+..|.+|+.+-+.+ .|..+=+|+..+|.+...+-+.-- +.++. .++
T Consensus 386 ~sp~~Aa~~~l~~~~~KR~ke~l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~ 465 (1010)
T KOG1991|consen 386 YSPDTAALDFLTTLVSKRGKETLPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVN 465 (1010)
T ss_pred CCCcHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHH
Confidence 3334556777777777755556777888999999854443 245667999999999876654322 33333 234
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhcc-CcchHHHHHHHHHHHHHHhh
Q 001448 151 IAAKLMKFNEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIV-DKSFVVRIAGARCLKAFAHI 220 (1075)
Q Consensus 151 ~llK~lK~~~~~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~-Dks~~Vr~aAa~cL~~l~~~ 220 (1075)
.++-.++++--.+|.-+...+++... .. --|+...++++.. ...|+. |+.+|||+-|+-.|..+..+
T Consensus 466 hVfP~f~s~~g~Lrarac~vl~~~~~-~d-f~d~~~l~~ale~-t~~~l~~d~~lPV~VeAalALq~fI~~ 533 (1010)
T KOG1991|consen 466 HVFPEFQSPYGYLRARACWVLSQFSS-ID-FKDPNNLSEALEL-THNCLLNDNELPVRVEAALALQSFISN 533 (1010)
T ss_pred HhhHhhcCchhHHHHHHHHHHHHHHh-cc-CCChHHHHHHHHH-HHHHhccCCcCchhhHHHHHHHHHHhc
Confidence 44445565544588888888888653 22 2356889999995 555555 99999999998777666654
No 121
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.92 E-value=5.8e+02 Score=33.16 Aligned_cols=357 Identities=17% Similarity=0.149 Sum_probs=187.5
Q ss_pred HHhhcCCChhHhHHHHHHHHHHhccCCchhhHHhHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHhhHhhcCHHHHHH
Q 001448 71 SLLILGARRPVRHLASVAMGRIISKGDNISVYSRVSSLQGFLSDGKKSEPQKVAGAAQCLGELYRQFGRRITSGLLETTI 150 (1075)
Q Consensus 71 ~ll~~~~g~P~R~l~a~cl~~ly~~GD~~~lf~~vn~l~~~l~~~k~~s~~~~~aA~~cLG~l~~~~G~~l~s~~~e~~~ 150 (1075)
.+|+..--.-.+..+=|.++.+-+.-|-..+|- ....-+ +.|+.+-+++ -=++.|- |...- -.+.-..++
T Consensus 42 ~lLdSnkd~~KleAmKRIia~iA~G~dvS~~Fp---~VVKNV-askn~EVKkL-VyvYLlr--YAEeq---pdLALLSIn 111 (968)
T KOG1060|consen 42 QLLDSNKDSLKLEAMKRIIALIAKGKDVSLLFP---AVVKNV-ASKNIEVKKL-VYVYLLR--YAEEQ---PDLALLSIN 111 (968)
T ss_pred HHHhccccHHHHHHHHHHHHHHhcCCcHHHHHH---HHHHHh-hccCHHHHHH-HHHHHHH--HhhcC---CCceeeeHH
Confidence 334444444455555555555555445444444 222222 2334333332 2222222 22222 244556788
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhcCCCcccchh
Q 001448 151 IAAKLMKFNEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGGPCLGVGEL 230 (1075)
Q Consensus 151 ~llK~lK~~~~~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~~~~~~~~dl 230 (1075)
.+-|.+|.....+|+.|++.|..| ..+ +..-|.-.+.|-|.+|-+.-||..||-.+-.|+.- ++ ++-
T Consensus 112 tfQk~L~DpN~LiRasALRvlSsI----Rvp----~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsL-d~----e~k 178 (968)
T KOG1060|consen 112 TFQKALKDPNQLIRASALRVLSSI----RVP----MIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSL-DP----EQK 178 (968)
T ss_pred HHHhhhcCCcHHHHHHHHHHHHhc----chh----hHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcC-Ch----hhH
Confidence 899999998899999999988763 322 23333444677789999999999998877666653 22 333
Q ss_pred hhHhhHHhhhccCCChhHHHHHHHHHHHHH------------------------------------HhccCCCCcCCC--
Q 001448 231 DNSATHCVKAIEDPIASVRDAFAEALGSLL------------------------------------ALGMNPQAQVQP-- 272 (1075)
Q Consensus 231 E~l~sl~~K~le~s~~~vR~a~A~~La~lL------------------------------------a~~~~~~~~~~~-- 272 (1075)
+.+..++=|.|.|-++-|=-++.-++-++- |..+.++.....
T Consensus 179 ~qL~e~I~~LLaD~splVvgsAv~AF~evCPerldLIHknyrklC~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~ 258 (968)
T KOG1060|consen 179 DQLEEVIKKLLADRSPLVVGSAVMAFEEVCPERLDLIHKNYRKLCRLLPDVDEWGQVVLINMLTRYARHQLPDPTVVDSS 258 (968)
T ss_pred HHHHHHHHHHhcCCCCcchhHHHHHHHHhchhHHHHhhHHHHHHHhhccchhhhhHHHHHHHHHHHHHhcCCCccccccc
Confidence 456666666666655544443333322221 111112110000
Q ss_pred ---CC-------CC-CCCCCCCh-hHHHHHHh--hhhhcccCCCCcchhHHHHHHHHHHHHHHhcccccCCCcchhHHHH
Q 001448 273 ---KG-------KG-PFPPAKKL-EGGLQRHL--ALPFTRANGAKSKNMRVNLTLSWVYFLQAIRLKYFHPDSELQDYAL 338 (1075)
Q Consensus 273 ---~~-------k~-~~~~~k~l-~~~l~~~L--s~~f~k~~~~~~r~~R~Gv~~ayv~fl~~lg~~wle~~~~~~~~~~ 338 (1075)
.+ +. ..+..... +|.-. +| ..+.+-+. +--|=.+++++|-++--.. .+..+.+
T Consensus 259 ~e~n~~~~~~~~~~~~~~~P~~~d~D~~l-LL~stkpLl~S~---n~sVVmA~aql~y~lAP~~---------~~~~i~k 325 (968)
T KOG1060|consen 259 LEDNGRSCNLKDKYNEIRTPYVNDPDLKL-LLQSTKPLLQSR---NPSVVMAVAQLFYHLAPKN---------QVTKIAK 325 (968)
T ss_pred cccCcccccccccccccCCCcccCccHHH-HHHhccHHHhcC---CcHHHHHHHhHHHhhCCHH---------HHHHHHH
Confidence 00 00 00001111 22111 11 11111111 3344446666665543221 1235565
Q ss_pred HHHHHhccCCCCCHHHHHHHHHH---------------------------HH-HhhhccCChHHHHHHHHHHHhhcccCC
Q 001448 339 QVMDMLRADIFVDSHALACVLYI---------------------------LR-IGVTDQMTEPTQRSFLVFLGKQLQAVD 390 (1075)
Q Consensus 339 ~i~~ll~~~~~~~~~~r~~v~~I---------------------------Lr-~~v~~~L~E~~Q~~~~~~l~~~~~~~~ 390 (1075)
.++.++..++.+.....+||.+| |. +++..+..|+.=.++++.+-.-+.+.|
T Consensus 326 aLvrLLrs~~~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~ssDp~~vk~lKleiLs~La~esni~~ILrE~q~YI~s~d 405 (968)
T KOG1060|consen 326 ALVRLLRSNREVQYVVLQNIATISIKRPTLFEPHLKSFFVRSSDPTQVKILKLEILSNLANESNISEILRELQTYIKSSD 405 (968)
T ss_pred HHHHHHhcCCcchhhhHHHHHHHHhcchhhhhhhhhceEeecCCHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCc
Confidence 66666665554444433333222 11 111122233333333333333333344
Q ss_pred CChhHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHhCCcchhhHHHHHHHHHHhh
Q 001448 391 ASPFMKIAALRTLSYTLKTLGEVPSEFKEVLDSTVVAAVSHSSQLVRIEAALTLRALAEVDPTCVSGLITYGVTTLNAL 469 (1075)
Q Consensus 391 ~s~~~lv~aL~el~~Ll~~LGsa~~~~~~~l~d~L~~lL~hps~svRi~AA~cLr~~~~a~Ps~l~~ll~~~~~~L~~~ 469 (1075)
. .....+.+++|.--..+|+. .+.|.+.|++++..-+..|=.+|+..+|.+....|.+.-.+|-+....++..
T Consensus 406 ~--~faa~aV~AiGrCA~~~~sv----~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p~~h~~ii~~La~lldti 478 (968)
T KOG1060|consen 406 R--SFAAAAVKAIGRCASRIGSV----TDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDPAEHLEILFQLARLLDTI 478 (968)
T ss_pred h--hHHHHHHHHHHHHHHhhCch----hhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhChHHHHHHHHHHHHHhhhh
Confidence 3 25566677776666666554 4567999999999889999999999999999999999988888877777554
No 122
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=55.89 E-value=19 Score=43.28 Aligned_cols=83 Identities=25% Similarity=0.368 Sum_probs=61.6
Q ss_pred hHHHHHHHHHHhccCCchhhHHhHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHH--hhHhhcCHHHHHHHHHHHhccC
Q 001448 82 RHLASVAMGRIISKGDNISVYSRVSSLQGFLSDGKKSEPQKVAGAAQCLGELYRQF--GRRITSGLLETTIIAAKLMKFN 159 (1075)
Q Consensus 82 R~l~a~cl~~ly~~GD~~~lf~~vn~l~~~l~~~k~~s~~~~~aA~~cLG~l~~~~--G~~l~s~~~e~~~~llK~lK~~ 159 (1075)
|.++.| |...| |+.+-.|.++|.. .++|.+.+-|++=+|++.+.+ ||.+..-+. .=..++++|...
T Consensus 341 ~EN~~k-----f~~~~----~~llk~L~~iL~~--s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg-~K~~vM~Lm~h~ 408 (429)
T cd00256 341 RENADR-----LNEKN----YELLKILIHLLET--SVDPIILAVACHDIGEYVRHYPRGKDVVEQLG-GKQRVMRLLNHE 408 (429)
T ss_pred HHHHHH-----HHhcc----hHHHHHHHHHHhc--CCCcceeehhhhhHHHHHHHCccHHHHHHHcC-cHHHHHHHhcCC
Confidence 666665 34444 7777799999952 345666667889999999986 888866444 334567777777
Q ss_pred cHHHHHHHHHHHHHHHh
Q 001448 160 EEFVRQEALLLLQNALE 176 (1075)
Q Consensus 160 ~~~~R~~~l~~L~kil~ 176 (1075)
.+.+|++|+++++|++.
T Consensus 409 d~~Vr~eAL~avQklm~ 425 (429)
T cd00256 409 DPNVRYEALLAVQKLMV 425 (429)
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 88999999999999864
No 123
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=55.59 E-value=2.5e+02 Score=36.58 Aligned_cols=154 Identities=14% Similarity=0.095 Sum_probs=93.2
Q ss_pred chhHHHHHHHHHHHHHHhcccccCCCcchhHHHHHHHHHhccCCCCCHH--HH-HHHHHHHHHhhhccC--ChHHHHHHH
Q 001448 305 KNMRVNLTLSWVYFLQAIRLKYFHPDSELQDYALQVMDMLRADIFVDSH--AL-ACVLYILRIGVTDQM--TEPTQRSFL 379 (1075)
Q Consensus 305 r~~R~Gv~~ayv~fl~~lg~~wle~~~~~~~~~~~i~~ll~~~~~~~~~--~r-~~v~~ILr~~v~~~L--~E~~Q~~~~ 379 (1075)
|.-|..+.+.....-..+| +.-++.+..-+-..++ ...-+|. .| ...-|-+.. |.+.+ .|+.+..-+
T Consensus 438 ~~YR~diSD~~~~~Y~ilg------d~ll~~L~~~l~q~~a-a~d~~p~s~~~tEaci~~~~s-va~~~~~t~~~~i~rl 509 (982)
T KOG2022|consen 438 ESYRKDISDLLMSSYSILG------DGLLDFLIDTLEQALA-AGDEDPDSLNRTEACIFQFQS-VAEYLGETESTWIPRL 509 (982)
T ss_pred HHHHHHHHHHHHHHHHHHh------HHHHHHHHHHHHHhhh-ccCCCchHHHHHHHHHHHHHH-HHhhcCcchhHHHHHH
Confidence 4557777776666666666 1122344434444444 3322332 22 222233232 23334 556664444
Q ss_pred HHHHhhcccCCCChhHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHhCCcchhhHH
Q 001448 380 VFLGKQLQAVDASPFMKIAALRTLSYTLKTLGEVPSEFKEVLDSTVVAAVSHSSQLVRIEAALTLRALAEVDPTCVSGLI 459 (1075)
Q Consensus 380 ~~l~~~~~~~~~s~~~lv~aL~el~~Ll~~LGsa~~~~~~~l~d~L~~lL~hps~svRi~AA~cLr~~~~a~Ps~l~~ll 459 (1075)
....-.++-..+|+..+-.+.+.+|.+...||+.+--+-- -...|++-|-.+..+++ |--.|+.+|..+|..+.|-+
T Consensus 510 ~~~~asik~S~~n~ql~~Tss~~igs~s~~l~e~P~~ln~-sl~~L~~~Lh~sk~s~q--~i~tl~tlC~~C~~~L~py~ 586 (982)
T KOG2022|consen 510 FETSASIKLSAPNPQLLSTSSDLIGSLSNWLGEHPMYLNP-SLPLLFQGLHNSKESEQ--AISTLKTLCETCPESLDPYA 586 (982)
T ss_pred HHhccccccccCChhHHHHHHHHHHHHHHHHhcCCcccCc-hHHHHHHHhcCchHHHH--HHHHHHHHHHhhhhhCchHH
Confidence 4444434434557888999999999999999998863311 14466666666666654 55559999999999999998
Q ss_pred HHHHHHHHhh
Q 001448 460 TYGVTTLNAL 469 (1075)
Q Consensus 460 ~~~~~~L~~~ 469 (1075)
+..+...+..
T Consensus 587 d~~~a~~~e~ 596 (982)
T KOG2022|consen 587 DQFSAVCYEV 596 (982)
T ss_pred HHHHHHHHHH
Confidence 8877766655
No 124
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=55.30 E-value=17 Score=29.11 Aligned_cols=41 Identities=20% Similarity=0.270 Sum_probs=37.3
Q ss_pred HHhhHHhhccCCCcchhHHHHHHHHhhcCCChhHHHHHHHH
Q 001448 975 RFTQQLVLFAPQAVSVHSHVQTLLSTLSSRQPILRHLAVST 1015 (1075)
Q Consensus 975 ~clQqL~lFAP~~v~~~~lV~~L~~~L~S~~~~Lr~aav~c 1015 (1075)
+|+-++.-..|.-.+.+.+...+...|..+.+..|+||++.
T Consensus 1 k~l~~iv~~dp~ll~~~~v~~~i~~rl~D~s~~VR~aav~l 41 (42)
T PF12765_consen 1 KALSSIVEKDPTLLDSSDVQSAIIRRLSDSSPSVREAAVDL 41 (42)
T ss_pred ChHHHHHhcCccccchHHHHHHHHHHhcCCChHHHHHHHHH
Confidence 47788888999999999999999999999999999999874
No 125
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=54.20 E-value=2.5e+02 Score=38.63 Aligned_cols=116 Identities=13% Similarity=0.094 Sum_probs=83.2
Q ss_pred CCChhhHHHHHHHHHHHHHHHhhHhhcCHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHH
Q 001448 117 KSEPQKVAGAAQCLGELYRQFGRRITSGLLETTIIAAKLMKFNEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMR 196 (1075)
Q Consensus 117 ~~s~~~~~aA~~cLG~l~~~~G~~l~s~~~e~~~~llK~lK~~~~~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r 196 (1075)
...+..|.=|+-||..+-+.= ...-..++.-..+-.=+--+++.+|-+|+.++++-+- ..+..+.++|-+ .-
T Consensus 827 e~~ialRtkAlKclS~ive~D--p~vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl-----~~~e~~~qyY~~-i~ 898 (1692)
T KOG1020|consen 827 ENAIALRTKALKCLSMIVEAD--PSVLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVL-----SIPELIFQYYDQ-II 898 (1692)
T ss_pred CchHHHHHHHHHHHHHHHhcC--hHhhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhh-----ccHHHHHHHHHH-HH
Confidence 445556666999999776642 2223344433333333333689999999999998776 235678888886 44
Q ss_pred HhccCcchHHHHHHHHHHHHHHhhcCCCcccchhhhHhhHHhhhccCCCh
Q 001448 197 FAIVDKSFVVRIAGARCLKAFAHIGGPCLGVGELDNSATHCVKAIEDPIA 246 (1075)
Q Consensus 197 ~~~~Dks~~Vr~aAa~cL~~l~~~~~~~~~~~dlE~l~sl~~K~le~s~~ 246 (1075)
.-..|.+..||--+++.+..+..++ .||..+...|.|-+--.++
T Consensus 899 erIlDtgvsVRKRvIKIlrdic~e~------pdf~~i~~~cakmlrRv~D 942 (1692)
T KOG1020|consen 899 ERILDTGVSVRKRVIKILRDICEET------PDFSKIVDMCAKMLRRVND 942 (1692)
T ss_pred hhcCCCchhHHHHHHHHHHHHHHhC------CChhhHHHHHHHHHHHhcc
Confidence 4578999999999999999998876 6888888899888765444
No 126
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=54.05 E-value=1.2e+02 Score=36.67 Aligned_cols=137 Identities=18% Similarity=0.139 Sum_probs=86.4
Q ss_pred HhHHHHHHHHHHhccCCchhhHHhHHHHHHhhh-------------cCCCCChhhHHHHHHHHHHHHHH----------H
Q 001448 81 VRHLASVAMGRIISKGDNISVYSRVSSLQGFLS-------------DGKKSEPQKVAGAAQCLGELYRQ----------F 137 (1075)
Q Consensus 81 ~R~l~a~cl~~ly~~GD~~~lf~~vn~l~~~l~-------------~~k~~s~~~~~aA~~cLG~l~~~----------~ 137 (1075)
+|.-.-.||..+..--+++++|- .-..++- +-||.+|+.|+-|+.++.++.+- .
T Consensus 12 vr~~al~~~~~~~~~~~~~~~yg---yw~~~~pd~~~~g~p~l~~l~lkd~~~~~ra~alqv~~~~l~gsk~fls~a~~~ 88 (728)
T KOG4535|consen 12 VRQGALVCFLSTIKSIEKKVLYG---YWSAFIPDTPELGSPSLMTLTLKDPSPKTRACALQVLSAILEGSKQFLSVAEDT 88 (728)
T ss_pred HHhhHHHHHHHHHhhhhhhhhhc---eeeeecCCCCCCCCceeeEEecCCCChhHHHHHHHHHHHHHHhhHHHHHHHhcc
Confidence 35555566666666666666664 2222222 13677888888899999887652 1
Q ss_pred h--------hHhhcCHHHHHHHHHHHhcc-CcHHHHHHHHHHHHHHHhcCCCCC-chhHHHHHHHHHHHHhccCcchHHH
Q 001448 138 G--------RRITSGLLETTIIAAKLMKF-NEEFVRQEALLLLQNALEGSGGSA-AASAYSEAFRLIMRFAIVDKSFVVR 207 (1075)
Q Consensus 138 G--------~~l~s~~~e~~~~llK~lK~-~~~~~R~~~l~~L~kil~g~g~~~-~~~~~~di~K~~~r~~~~Dks~~Vr 207 (1075)
| -|+.++.-+.-.+++-.+-. ..+++-+.++++|+..+....=.- .-...-++|.+ .|-....++.+||
T Consensus 89 ~~~~ftpf~v~~a~si~~~~r~l~~~l~~e~~~~~~tq~~kcla~lv~~~p~~~l~~~~~~~~~~~-ik~~i~~~d~~v~ 167 (728)
T KOG4535|consen 89 SDHAFTPFSVMIACSIRELHRCLLLALVAESSSQTVTQIIKCLANLVSNAPYDRLKLSLLTKVWNQ-IKPYIRHKDVNVR 167 (728)
T ss_pred CCcCCCchHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHH-HHHHhhcCCCChh
Confidence 2 22333333333333333332 456778899999999887554111 12456788886 5555778999999
Q ss_pred HHHHHHHHHHHhhc
Q 001448 208 IAGARCLKAFAHIG 221 (1075)
Q Consensus 208 ~aAa~cL~~l~~~~ 221 (1075)
+++.-.+..++..+
T Consensus 168 vs~l~~~~~~v~t~ 181 (728)
T KOG4535|consen 168 VSSLTLLGAIVSTH 181 (728)
T ss_pred hHHHHHHHHHHhcC
Confidence 99999998888754
No 127
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=53.72 E-value=6.3e+02 Score=34.19 Aligned_cols=110 Identities=16% Similarity=0.195 Sum_probs=80.4
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHHHHhcCCCCCc-hhH---HHH-HHHHHHHHhccCcchHHHHHHHHHHHHHHhhcCCC
Q 001448 150 IIAAKLMKFNEEFVRQEALLLLQNALEGSGGSAA-ASA---YSE-AFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGGPC 224 (1075)
Q Consensus 150 ~~llK~lK~~~~~~R~~~l~~L~kil~g~g~~~~-~~~---~~d-i~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~~~~ 224 (1075)
+.++..+-..+..+|.+.+..+++++...-...+ +.. .++ +.- +.+.-+.|-+..||.=+...|..+.+.. .
T Consensus 315 ~~lv~lld~es~~lRnavlei~~n~V~~~l~d~e~~~~sk~~r~~~le-~l~erl~Dvsa~vRskVLqv~~~l~~~~--s 391 (1251)
T KOG0414|consen 315 TLLVDLLDSESYTLRNAVLEICANLVASELRDEELEEMSKSLRDELLE-LLRERLLDVSAYVRSKVLQVFRRLFQQH--S 391 (1251)
T ss_pred HHHHHhcCCchHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHH-HHHHHhhcccHHHHHHHHHHHHHHHHcc--C
Confidence 3344455556788999999999998875543221 122 233 333 3444578999999999999999988864 3
Q ss_pred cccchhhhHhhHHhhhccCCChhHHHHHHHHHHHHHHh
Q 001448 225 LGVGELDNSATHCVKAIEDPIASVRDAFAEALGSLLAL 262 (1075)
Q Consensus 225 ~~~~dlE~l~sl~~K~le~s~~~vR~a~A~~La~lLa~ 262 (1075)
...+-+-.+.++.+.-++|-+.-||+.+.+++.-+|..
T Consensus 392 ~p~~~~~eV~~la~grl~DkSslVRk~Ai~Ll~~~L~~ 429 (1251)
T KOG0414|consen 392 IPLGSRTEVLELAIGRLEDKSSLVRKNAIQLLSSLLDR 429 (1251)
T ss_pred CCccHHHHHHHHHhcccccccHHHHHHHHHHHHHHHhc
Confidence 33344457899999999999999999999999999944
No 128
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.94 E-value=3.3e+02 Score=35.12 Aligned_cols=70 Identities=26% Similarity=0.210 Sum_probs=49.6
Q ss_pred hhhhhhccccCCCchhHHHHHhhHHhhccCCCcchhHHHHHHHHhhcCCChhHHHHHHHHHHHHHccChhhHh
Q 001448 956 FFSRCKVSAWQCSSPKWSVRFTQQLVLFAPQAVSVHSHVQTLLSTLSSRQPILRHLAVSTLRHLIEKDPDSVI 1028 (1075)
Q Consensus 956 ~~~~~~~~~~~~~~~~eai~clQqL~lFAP~~v~~~~lV~~L~~~L~S~~~~Lr~aav~cLrqL~qR~a~~v~ 1028 (1075)
+...|. .+-.|-+..||=+-.+.|.==.|+.+.- -|..|+..++|+...||-||+..|+++++..|..|.
T Consensus 249 fl~s~l-~~K~emV~~EaArai~~l~~~~~r~l~p--avs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~ 318 (865)
T KOG1078|consen 249 FLESCL-RHKSEMVIYEAARAIVSLPNTNSRELAP--AVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVT 318 (865)
T ss_pred HHHHHH-hchhHHHHHHHHHHHhhccccCHhhcch--HHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCcccc
Confidence 444453 2344557777777777664322222211 567799999999999999999999999999998754
No 129
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=51.38 E-value=5.6e+02 Score=32.18 Aligned_cols=48 Identities=25% Similarity=0.142 Sum_probs=35.8
Q ss_pred CcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhccCcchHHHHHHH
Q 001448 159 NEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVDKSFVVRIAGA 211 (1075)
Q Consensus 159 ~~~~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~Dks~~Vr~aAa 211 (1075)
-|+.+|.++..+|.+.=+..|+ .+.-.+-++|.+.+ +|.+-.||++|.
T Consensus 144 RE~~VR~eAv~~L~~~Qe~~~n--een~~~n~l~~~vq---nDPS~EVRr~al 191 (885)
T COG5218 144 REKAVRREAVKVLCYYQEMELN--EENRIVNLLKDIVQ---NDPSDEVRRLAL 191 (885)
T ss_pred chHHHHHHHHHHHHHHHhccCC--hHHHHHHHHHHHHh---cCcHHHHHHHHH
Confidence 6999999999999998876663 34455567774333 588888998874
No 130
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=51.32 E-value=83 Score=36.01 Aligned_cols=135 Identities=16% Similarity=0.116 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHhhcC-CChhHhHHHHHHHHHHhccCC-chhhHHhHH---------H
Q 001448 39 CFDLLSDLISAIDEEPKESILLWQRKCEDALYSLLILG-ARRPVRHLASVAMGRIISKGD-NISVYSRVS---------S 107 (1075)
Q Consensus 39 ~~~wL~~L~~~l~~~~k~di~~~Q~~l~~~L~~ll~~~-~g~P~R~l~a~cl~~ly~~GD-~~~lf~~vn---------~ 107 (1075)
=+++++.+++.-....++-+++.=..+.+.++++++.. +..-+.+-+-..+..+.+... +..+|-..+ .
T Consensus 30 ~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~ 109 (312)
T PF03224_consen 30 DLSLIKKLDKQSKEERRELLEEDGDQYASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSP 109 (312)
T ss_dssp HHHHHHHHHHHHH-------------------HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHhchhhHHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHH
Confidence 35677777777766655555444456777888888877 888888888888888877653 333333322 2
Q ss_pred HHHhhhcCCCCChhhHHHHHHHHHHHHHHHhhHhhcCHHHHHHHHHHHhcc----CcHHHHHHHHHHHHHHHh
Q 001448 108 LQGFLSDGKKSEPQKVAGAAQCLGELYRQFGRRITSGLLETTIIAAKLMKF----NEEFVRQEALLLLQNALE 176 (1075)
Q Consensus 108 l~~~l~~~k~~s~~~~~aA~~cLG~l~~~~G~~l~s~~~e~~~~llK~lK~----~~~~~R~~~l~~L~kil~ 176 (1075)
+..++. .+ +......|+.+|+.+...-+........+.+..+++++++ +...+...++++|+.+++
T Consensus 110 fl~ll~--~~-D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~ 179 (312)
T PF03224_consen 110 FLKLLD--RN-DSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLR 179 (312)
T ss_dssp HHHH-S---S-SHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHT
T ss_pred HHHHhc--CC-CHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhC
Confidence 333332 12 4444567999999998877665554445777778888776 456688899999999987
No 131
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.03 E-value=6.8e+02 Score=32.51 Aligned_cols=311 Identities=13% Similarity=0.123 Sum_probs=165.5
Q ss_pred HHHHHhhcCCChhHhHHHHHHHHH------HhccCCc-hhhHHhHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHhhH
Q 001448 68 ALYSLLILGARRPVRHLASVAMGR------IISKGDN-ISVYSRVSSLQGFLSDGKKSEPQKVAGAAQCLGELYRQFGRR 140 (1075)
Q Consensus 68 ~L~~ll~~~~g~P~R~l~a~cl~~------ly~~GD~-~~lf~~vn~l~~~l~~~k~~s~~~~~aA~~cLG~l~~~~G~~ 140 (1075)
++.++++....--.++-+|+|+.. ++...+. ..+|. .+.+.++ .|...-- .=|...+-.++...+|.
T Consensus 206 a~sklv~~~~~~~~~~~~A~~~lir~~~~~l~~~~~~~s~~~~---fl~s~l~-~K~emV~--~EaArai~~l~~~~~r~ 279 (865)
T KOG1078|consen 206 AVSKLVQKFTRGSLKSPLAVCMLIRIASELLKENQQADSPLFP---FLESCLR-HKSEMVI--YEAARAIVSLPNTNSRE 279 (865)
T ss_pred HHHHHHHHHccccccchhHHHHHHHHHHHHhhhcccchhhHHH---HHHHHHh-chhHHHH--HHHHHHHhhccccCHhh
Confidence 334444433333445555666544 2322221 13444 4445554 4432221 23555666778877887
Q ss_pred hhcCHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhh
Q 001448 141 ITSGLLETTIIAAKLMKFNEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHI 220 (1075)
Q Consensus 141 l~s~~~e~~~~llK~lK~~~~~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~ 220 (1075)
+.. +++.+-=.+++..+.+|.++++.|+++-..-... ...+-+|+-.. .+|..-.+-.-| ...|.+.
T Consensus 280 l~p----avs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~-v~~cN~elE~l-----Itd~NrsIat~A---ITtLLKT 346 (865)
T KOG1078|consen 280 LAP----AVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQA-VTVCNLDLESL-----ITDSNRSIATLA---ITTLLKT 346 (865)
T ss_pred cch----HHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCcc-ccccchhHHhh-----hcccccchhHHH---HHHHHHh
Confidence 754 7777777778888999999999999987766543 34678887774 677443333222 2334443
Q ss_pred cCCCcccchhhhHhhHHhhhccCCChhHHHHHHHHHHHHHHhccCCCCcCCCCCCCCCCCCCChhHHHHHHhhhhhcccC
Q 001448 221 GGPCLGVGELDNSATHCVKAIEDPIASVRDAFAEALGSLLALGMNPQAQVQPKGKGPFPPAKKLEGGLQRHLALPFTRAN 300 (1075)
Q Consensus 221 ~~~~~~~~dlE~l~sl~~K~le~s~~~vR~a~A~~La~lLa~~~~~~~~~~~~~k~~~~~~k~l~~~l~~~Ls~~f~k~~ 300 (1075)
+ ..+..|.+...+.-++-+-+++-...+..++-.+.... |. ....|..+|+.-....+
T Consensus 347 G----~e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~f--p~----------------k~~~~m~FL~~~Lr~eG 404 (865)
T KOG1078|consen 347 G----TESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKF--PR----------------KHTVMMNFLSNMLREEG 404 (865)
T ss_pred c----chhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhc--cH----------------HHHHHHHHHHHHHHhcc
Confidence 2 23445555555555555544444555555555544221 11 11222225555444433
Q ss_pred CCCcchhHHHHHHHHHHHHHHh-cc---------cccCCCcchhHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhhhccC
Q 001448 301 GAKSKNMRVNLTLSWVYFLQAI-RL---------KYFHPDSELQDYALQVMDMLRADIFVDSHALACVLYILRIGVTDQM 370 (1075)
Q Consensus 301 ~~~~r~~R~Gv~~ayv~fl~~l-g~---------~wle~~~~~~~~~~~i~~ll~~~~~~~~~~r~~v~~ILr~~v~~~L 370 (1075)
.=+-+-.+.++.+..+..- .. .|.|. -+.......|++++.......++--+++.||.-.++.+
T Consensus 405 ---g~e~K~aivd~Ii~iie~~pdsKe~~L~~LCefIED-ce~~~i~~rILhlLG~EgP~a~~Pskyir~iyNRviLE-- 478 (865)
T KOG1078|consen 405 ---GFEFKRAIVDAIIDIIEENPDSKERGLEHLCEFIED-CEFTQIAVRILHLLGKEGPKAPNPSKYIRFIYNRVILE-- 478 (865)
T ss_pred ---CchHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHh-ccchHHHHHHHHHHhccCCCCCCcchhhHHHhhhhhhh--
Confidence 3555666666766666531 10 12221 12234444566666644444444456666665544432
Q ss_pred ChHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHh
Q 001448 371 TEPTQRSFLVFLGKQLQAVDASPFMKIAALRTLSYTLKTLGEVPSEFKEVLDSTVVAAVSHSSQLVRIEAALTLRALAEV 450 (1075)
Q Consensus 371 ~E~~Q~~~~~~l~~~~~~~~~s~~~lv~aL~el~~Ll~~LGsa~~~~~~~l~d~L~~lL~hps~svRi~AA~cLr~~~~a 450 (1075)
..+.+ ...+.+|--.+ .|.. .....+...+.+++-.+...||=.|...|+.+-..
T Consensus 479 ---------n~ivR---------aaAv~alaKfg-----~~~~--~l~~sI~vllkRc~~D~DdevRdrAtf~l~~l~~~ 533 (865)
T KOG1078|consen 479 ---------NAIVR---------AAAVSALAKFG-----AQDV--VLLPSILVLLKRCLNDSDDEVRDRATFYLKNLEEK 533 (865)
T ss_pred ---------hhhhH---------HHHHHHHHHHh-----cCCC--CccccHHHHHHHHhcCchHHHHHHHHHHHHHhhhh
Confidence 11111 12233333332 2222 22345567788899999999999998888877633
No 132
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=51.00 E-value=26 Score=27.37 Aligned_cols=29 Identities=24% Similarity=0.300 Sum_probs=26.7
Q ss_pred HHHHHHHHhhcCCChhHHHHHHHHHHHHH
Q 001448 992 SHVQTLLSTLSSRQPILRHLAVSTLRHLI 1020 (1075)
Q Consensus 992 ~lV~~L~~~L~S~~~~Lr~aav~cLrqL~ 1020 (1075)
.-||.|...|.+.++.+++.|+.+|++|.
T Consensus 12 g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 12 GGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp THHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 45889999999999999999999999986
No 133
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=49.09 E-value=91 Score=34.93 Aligned_cols=90 Identities=14% Similarity=0.203 Sum_probs=73.8
Q ss_pred cCCCchhHHHHHhhHHhhccCCCcchhHHHHHHHHhhcCCChhHHHHHHHHHHHHHccCh--hhHhhhchHHHHHHhhcc
Q 001448 965 WQCSSPKWSVRFTQQLVLFAPQAVSVHSHVQTLLSTLSSRQPILRHLAVSTLRHLIEKDP--DSVIEERIEGNLFHMLDE 1042 (1075)
Q Consensus 965 ~~~~~~~eai~clQqL~lFAP~~v~~~~lV~~L~~~L~S~~~~Lr~aav~cLrqL~qR~a--~~v~~~~le~~Lf~~LD~ 1042 (1075)
.+..+|..+++.|-+|.+-.-.|--+..+++.|..-|.+.+...|.-+..+|.+|.+.-+ .++...+....+...+|+
T Consensus 107 lns~~Q~agLrlL~nLtv~~~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np~~~~~Ll~~q~~~~~~~Lf~~ 186 (254)
T PF04826_consen 107 LNSEVQLAGLRLLTNLTVTNDYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSENPDMTRELLSAQVLSSFLSLFNS 186 (254)
T ss_pred CCCHHHHHHHHHHHccCCCcchhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhccCHHHHHHHHhccchhHHHHHHcc
Confidence 345578999999999987665555567889999999999999999999999999998875 677777788888899999
Q ss_pred CCCHH-HHHHHHH
Q 001448 1043 ETDSE-YVKSYTL 1054 (1075)
Q Consensus 1043 e~d~~-l~~~~~~ 1054 (1075)
+.+.+ +.+.+++
T Consensus 187 ~~~~~~l~~~l~~ 199 (254)
T PF04826_consen 187 SESKENLLRVLTF 199 (254)
T ss_pred CCccHHHHHHHHH
Confidence 87777 5555555
No 134
>PF09450 DUF2019: Domain of unknown function (DUF2019); InterPro: IPR018568 Protein of unknown function found in bacteria. ; PDB: 2I9C_A.
Probab=48.64 E-value=4.2 Score=39.33 Aligned_cols=36 Identities=19% Similarity=0.243 Sum_probs=26.8
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHHHhCCcchhhHHH
Q 001448 422 DSTVVAAVSHSSQLVRIEAALTLRALAEVDPTCVSGLIT 460 (1075)
Q Consensus 422 ~d~L~~lL~hps~svRi~AA~cLr~~~~a~Ps~l~~ll~ 460 (1075)
++.|+.+|.||+..||+.||.-+-.+. |.....+|+
T Consensus 49 r~aLl~LL~hpn~~VRl~AA~~~L~~~---p~eA~~~Le 84 (106)
T PF09450_consen 49 RDALLPLLKHPNMQVRLWAAAHTLRYA---PEEARKVLE 84 (106)
T ss_dssp GGGGGGGGGSS-HHHHHHHHHTTTTT----HHHHHHHHH
T ss_pred HHHHHHHHcCCChhHHHHHHHHHHHhC---HHHHHHHHH
Confidence 678999999999999999997666665 655555553
No 135
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=48.50 E-value=68 Score=40.64 Aligned_cols=93 Identities=23% Similarity=0.170 Sum_probs=67.9
Q ss_pred HhccCcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhcCCCcccchhhhHh
Q 001448 155 LMKFNEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGGPCLGVGELDNSA 234 (1075)
Q Consensus 155 ~lK~~~~~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~~~~~~~~dlE~l~ 234 (1075)
.+...++.+|+.-|.++.-.-.|.|+ ..+.|++. ..+.+|-+-.||+||.-.+. |+--.|-|.+.
T Consensus 527 l~~dkdpilR~~Gm~t~alAy~GTgn---nkair~lL----h~aVsD~nDDVrRaAVialG--------FVl~~dp~~~~ 591 (929)
T KOG2062|consen 527 LLRDKDPILRYGGMYTLALAYVGTGN---NKAIRRLL----HVAVSDVNDDVRRAAVIALG--------FVLFRDPEQLP 591 (929)
T ss_pred HhcCCchhhhhhhHHHHHHHHhccCc---hhhHHHhh----cccccccchHHHHHHHHHhe--------eeEecChhhch
Confidence 34445889999999888887777774 23455544 44688999999999975552 44344556777
Q ss_pred hHHhhhccCCChhHHHHHHHHHHHHHHh
Q 001448 235 THCVKAIEDPIASVRDAFAEALGSLLAL 262 (1075)
Q Consensus 235 sl~~K~le~s~~~vR~a~A~~La~lLa~ 262 (1075)
++.-=.-|+-|..||..+|-+||-..|-
T Consensus 592 s~V~lLses~N~HVRyGaA~ALGIaCAG 619 (929)
T KOG2062|consen 592 STVSLLSESYNPHVRYGAAMALGIACAG 619 (929)
T ss_pred HHHHHHhhhcChhhhhhHHHHHhhhhcC
Confidence 7777777889999999999999877643
No 136
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=48.25 E-value=5.8e+02 Score=30.96 Aligned_cols=119 Identities=11% Similarity=0.060 Sum_probs=76.5
Q ss_pred hhcCHHHHHHHHHHHhcc-CcHHHHHHHHHHHHHHHhcCCCCCchhHH------HHHHHHHHHHhccCcchHHHHHHHHH
Q 001448 141 ITSGLLETTIIAAKLMKF-NEEFVRQEALLLLQNALEGSGGSAAASAY------SEAFRLIMRFAIVDKSFVVRIAGARC 213 (1075)
Q Consensus 141 l~s~~~e~~~~llK~lK~-~~~~~R~~~l~~L~kil~g~g~~~~~~~~------~di~K~~~r~~~~Dks~~Vr~aAa~c 213 (1075)
+....+..+..++++++. ....+...++..+.-++....+.. +-.+ .|.|...++. ++..+-.+.-.|+.+
T Consensus 47 ~~~~~~~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~-~~f~~~~~~~~~~~~~fl~l-L~~~d~~i~~~a~~i 124 (429)
T cd00256 47 LDVLSGQYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRV-KLFHDDALLKKKTWEPFFNL-LNRQDQFIVHMSFSI 124 (429)
T ss_pred hcccHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHH-HHHHHHhhccccchHHHHHH-HcCCchhHHHHHHHH
Confidence 334447888888888886 456777889999999998644211 1111 3566655663 555677888999999
Q ss_pred HHHHHhhcCCCcccchhhhHhhHHhhhccCC-ChhHHHHHHHHHHHHHH
Q 001448 214 LKAFAHIGGPCLGVGELDNSATHCVKAIEDP-IASVRDAFAEALGSLLA 261 (1075)
Q Consensus 214 L~~l~~~~~~~~~~~dlE~l~sl~~K~le~s-~~~vR~a~A~~La~lLa 261 (1075)
+..++..+..-....+++.+.+...+.+.++ +......+.+||+.+|-
T Consensus 125 Lt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~ 173 (429)
T cd00256 125 LAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLR 173 (429)
T ss_pred HHHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhC
Confidence 9888875322123345555555555555543 34455666689999883
No 137
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=48.22 E-value=6.4e+02 Score=31.39 Aligned_cols=218 Identities=15% Similarity=0.138 Sum_probs=128.0
Q ss_pred HHHHHHHhccCChhhHHHHHHHHHHHHHHHhhcCCChhHhHHHHHHHHHHhccCCchhhHHhHHHHHHhhhcCCCCChhh
Q 001448 43 LSDLISAIDEEPKESILLWQRKCEDALYSLLILGARRPVRHLASVAMGRIISKGDNISVYSRVSSLQGFLSDGKKSEPQK 122 (1075)
Q Consensus 43 L~~L~~~l~~~~k~di~~~Q~~l~~~L~~ll~~~~g~P~R~l~a~cl~~ly~~GD~~~lf~~vn~l~~~l~~~k~~s~~~ 122 (1075)
...|.+.+..++.+++.+-=+++.. .+ .-.|+++-.+++.. |..- .+..+.+.|+. ++.++..
T Consensus 313 f~~lv~~lR~~~~e~l~~l~~~~~~--------~~-~~~r~~~~Dal~~~---GT~~----a~~~i~~~i~~-~~~~~~e 375 (574)
T smart00638 313 FLRLVRLLRTLSEEQLEQLWRQLYE--------KK-KKARRIFLDAVAQA---GTPP----ALKFIKQWIKN-KKITPLE 375 (574)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHh--------CC-HHHHHHHHHHHHhc---CCHH----HHHHHHHHHHc-CCCCHHH
Confidence 3456777778888887766444422 11 34577776666554 4432 55567777874 3434322
Q ss_pred HHHHHHHHHHHHHHHhhHhhcCHHHHHHHHHHHhcc----CcHHHHHHHHHHHHHHHhcCCCCCc---hhHHHHHHHH--
Q 001448 123 VAGAAQCLGELYRQFGRRITSGLLETTIIAAKLMKF----NEEFVRQEALLLLQNALEGSGGSAA---ASAYSEAFRL-- 193 (1075)
Q Consensus 123 ~~aA~~cLG~l~~~~G~~l~s~~~e~~~~llK~lK~----~~~~~R~~~l~~L~kil~g~g~~~~---~~~~~di~K~-- 193 (1075)
. . +++......+..--++++..++.++|+ ++..+|..++.++..++...-...+ ..+..++.|.
T Consensus 376 a---~----~~~~~~~~~~~~Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~ 448 (574)
T smart00638 376 A---A----QLLAVLPHTARYPTEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLH 448 (574)
T ss_pred H---H----HHHHHHHHhhhcCCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHH
Confidence 1 1 344444456777889999999999986 5788999999999999986554332 1223444442
Q ss_pred -HHHHhccCcchHHHHHHHHHHHHHHhhcCCCcccchhhhHhhHHhhhcc---CCChhHHHHHHHHHHHHHHhccCCCCc
Q 001448 194 -IMRFAIVDKSFVVRIAGARCLKAFAHIGGPCLGVGELDNSATHCVKAIE---DPIASVRDAFAEALGSLLALGMNPQAQ 269 (1075)
Q Consensus 194 -~~r~~~~Dks~~Vr~aAa~cL~~l~~~~~~~~~~~dlE~l~sl~~K~le---~s~~~vR~a~A~~La~lLa~~~~~~~~ 269 (1075)
.+..+.++++...+..+.+.|..+..- .......+.++ ..+..+|.++-.+|-.+. . ..|.
T Consensus 449 ~~l~~~~~~~~~~~~~~~LkaLGN~g~~-----------~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a-~-~~p~-- 513 (574)
T smart00638 449 ELLQQAVSKGDEEEIQLYLKALGNAGHP-----------SSIKVLEPYLEGAEPLSTFIRLAAILALRNLA-K-RDPR-- 513 (574)
T ss_pred HHHHHHHhcCCchheeeHHHhhhccCCh-----------hHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHH-H-hCch--
Confidence 244556667777776666666444331 22223333333 345678888777777543 1 1111
Q ss_pred CCCCCCCCCCCCCChhHHHHHHhhhhhcccCCCCcchhHHHHHHHHHHHHHH
Q 001448 270 VQPKGKGPFPPAKKLEGGLQRHLALPFTRANGAKSKNMRVNLTLSWVYFLQA 321 (1075)
Q Consensus 270 ~~~~~k~~~~~~k~l~~~l~~~Ls~~f~k~~~~~~r~~R~Gv~~ayv~fl~~ 321 (1075)
...+ .|-..|...+- .-|+|++ ||..++..
T Consensus 514 -------------~v~~----~l~~i~~n~~e--~~EvRia---A~~~lm~t 543 (574)
T smart00638 514 -------------KVQE----VLLPIYLNRAE--PPEVRMA---AVLVLMET 543 (574)
T ss_pred -------------HHHH----HHHHHHcCCCC--ChHHHHH---HHHHHHhc
Confidence 1222 44455666554 6889986 55555554
No 138
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=48.07 E-value=1.5e+02 Score=34.17 Aligned_cols=159 Identities=14% Similarity=0.126 Sum_probs=101.3
Q ss_pred HhccCCchhhHHhHH-HHHHhhhcCC-CCChhhHHHHHHHHHHHHHHHhhHhhcCHHHHHHHHHHHhccCcHHHHHHHHH
Q 001448 92 IISKGDNISVYSRVS-SLQGFLSDGK-KSEPQKVAGAAQCLGELYRQFGRRITSGLLETTIIAAKLMKFNEEFVRQEALL 169 (1075)
Q Consensus 92 ly~~GD~~~lf~~vn-~l~~~l~~~k-~~s~~~~~aA~~cLG~l~~~~G~~l~s~~~e~~~~llK~lK~~~~~~R~~~l~ 169 (1075)
.|-.-.....||+.+ .++..++ .= .++-..+.-++--+-.+-+-|-+++...+.+++-.+.|.+||--+++=..+..
T Consensus 73 e~~~sk~l~~fd~p~~al~~~l~-~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~ 151 (334)
T KOG2933|consen 73 EYIVSKNLSPFDDPEAALKQALK-KLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACM 151 (334)
T ss_pred HHhhhcccCccCcHHHHHHHHHH-HhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 344455667777776 3443443 11 11222222334444455556668898999999999999999966665556667
Q ss_pred HHHHHHhcCCCCCchhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhcCCCcccchhhhHhhHHhhhccCCChhHH
Q 001448 170 LLQNALEGSGGSAAASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGGPCLGVGELDNSATHCVKAIEDPIASVR 249 (1075)
Q Consensus 170 ~L~kil~g~g~~~~~~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~~~~~~~~dlE~l~sl~~K~le~s~~~vR 249 (1075)
+++.|....+.++++ ...+..++....+. +..-.||-.|-+.|.+++++..| . .+..-..=.+...+..+|
T Consensus 152 t~~difs~ln~~i~~-~ld~lv~~Ll~ka~-~dnrFvreda~kAL~aMV~~vtp----~---~~L~~L~~~~~~~n~r~r 222 (334)
T KOG2933|consen 152 TLADIFSSLNNSIDQ-ELDDLVTQLLHKAS-QDNRFVREDAEKALVAMVNHVTP----Q---KLLRKLIPILQHSNPRVR 222 (334)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHhhhc-ccchHHHHHHHHHHHHHHhccCh----H---HHHHHHHHHHhhhchhhh
Confidence 899999999988874 56676675444433 34457899999999999997422 1 122222222556777888
Q ss_pred HHHHHHHHHHH
Q 001448 250 DAFAEALGSLL 260 (1075)
Q Consensus 250 ~a~A~~La~lL 260 (1075)
.-++.|+....
T Consensus 223 ~~a~~~~~~~v 233 (334)
T KOG2933|consen 223 AKAALCFSRCV 233 (334)
T ss_pred hhhhccccccc
Confidence 87776665544
No 139
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=47.93 E-value=5.2e+02 Score=30.28 Aligned_cols=49 Identities=10% Similarity=0.160 Sum_probs=36.6
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHHHhCCcchhhHHHHHHHHHHhhhh
Q 001448 422 DSTVVAAVSHSSQLVRIEAALTLRALAEVDPTCVSGLITYGVTTLNALRE 471 (1075)
Q Consensus 422 ~d~L~~lL~hps~svRi~AA~cLr~~~~a~Ps~l~~ll~~~~~~L~~~~~ 471 (1075)
...++.+|.++|-.||++|=..++.|+ |+|....++.+-+...=+++.+
T Consensus 256 Lkl~M~lL~d~sk~Iq~eAFhvFKvFV-ANp~K~~~I~~iL~~Nr~kLl~ 304 (335)
T PF08569_consen 256 LKLMMNLLRDKSKNIQFEAFHVFKVFV-ANPNKPPPIVDILIKNREKLLR 304 (335)
T ss_dssp HHHHHHHTT-S-HHHHHHHHHHHHHHH-H-SS-BHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHhcCcchhhhHHHHHHHHHHH-hCCCCChHHHHHHHHHHHHHHH
Confidence 458899999999999999999999998 5599999988766554444444
No 140
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=47.44 E-value=1e+02 Score=29.77 Aligned_cols=72 Identities=24% Similarity=0.277 Sum_probs=46.8
Q ss_pred HHHHHhhhc--CCCCChhhHHHHHHHHHHHHHHHhhHhhcCHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhcCCC
Q 001448 106 SSLQGFLSD--GKKSEPQKVAGAAQCLGELYRQFGRRITSGLLETTIIAAKLMKFNEEFVRQEALLLLQNALEGSGG 180 (1075)
Q Consensus 106 n~l~~~l~~--~k~~s~~~~~aA~~cLG~l~~~~G~~l~s~~~e~~~~llK~lK~~~~~~R~~~l~~L~kil~g~g~ 180 (1075)
+..++.+.+ +|++.+.++ -|+..+|++.+..|..+.+..+-+...+--.+.. ..+|..++.+-...++.++.
T Consensus 14 ~~f~~~l~d~~~~~~~~ek~-~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~--~~l~~~al~~W~~fi~~L~~ 87 (107)
T PF08064_consen 14 TRFSDVLNDLRGKKPIPEKK-RALRSIEELIKLGGSHISSARPQIMACLQSALEI--PELREEALSCWNCFIKTLDE 87 (107)
T ss_pred HHHHHHHhccccCCCHHHHH-HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCC--hhhHHHHHHHHHHHHHHCCH
Confidence 445555553 455455555 6999999999966666665555544443334433 37888888888888887764
No 141
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=47.28 E-value=2.6e+02 Score=34.82 Aligned_cols=163 Identities=14% Similarity=0.129 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHhccCCchhhHHhHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHhhHhhcCHHHHHHHHHHHhccCcH
Q 001448 82 RHLASVAMGRIISKGDNISVYSRVSSLQGFLSDGKKSEPQKVAGAAQCLGELYRQFGRRITSGLLETTIIAAKLMKFNEE 161 (1075)
Q Consensus 82 R~l~a~cl~~ly~~GD~~~lf~~vn~l~~~l~~~k~~s~~~~~aA~~cLG~l~~~~G~~l~s~~~e~~~~llK~lK~~~~ 161 (1075)
|..---++-.|...|...++=.-||.+-.++. |.|-..+.-++..+-.+--.|.+.= -++-+.....++. ...-
T Consensus 354 r~IstyAITtLLKTGt~e~idrLv~~I~sfvh---D~SD~FKiI~ida~rsLsl~Fp~k~-~s~l~FL~~~L~~--eGg~ 427 (898)
T COG5240 354 RTISTYAITTLLKTGTEETIDRLVNLIPSFVH---DMSDGFKIIAIDALRSLSLLFPSKK-LSYLDFLGSSLLQ--EGGL 427 (898)
T ss_pred ccchHHHHHHHHHcCchhhHHHHHHHHHHHHH---hhccCceEEeHHHHHHHHhhCcHHH-HHHHHHHHHHHHh--cccc
Q ss_pred HHHHHHHHHHHHHHhcCCC------------------------------------CCchhHHHHHHHHHHHHhccCcchH
Q 001448 162 FVRQEALLLLQNALEGSGG------------------------------------SAAASAYSEAFRLIMRFAIVDKSFV 205 (1075)
Q Consensus 162 ~~R~~~l~~L~kil~g~g~------------------------------------~~~~~~~~di~K~~~r~~~~Dks~~ 205 (1075)
.....+..++..+++.... +.+.-..|-||.. +-=..-.
T Consensus 428 eFK~~~Vdaisd~~~~~p~skEraLe~LC~fIEDcey~~I~vrIL~iLG~EgP~a~~P~~yvrhIyNR-----~iLEN~i 502 (898)
T COG5240 428 EFKKYMVDAISDAMENDPDSKERALEVLCTFIEDCEYHQITVRILGILGREGPRAKTPGKYVRHIYNR-----LILENNI 502 (898)
T ss_pred hHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHhhcchhHHHHHHHHHhcccCCCCCCcchHHHHHHHH-----HHHhhhH
Q ss_pred HHHHHHHHHHHHHhh-cCCCcccchhhhHhhHHhhhccCCChhHHHHHHHHHHHH
Q 001448 206 VRIAGARCLKAFAHI-GGPCLGVGELDNSATHCVKAIEDPIASVRDAFAEALGSL 259 (1075)
Q Consensus 206 Vr~aAa~cL~~l~~~-~~~~~~~~dlE~l~sl~~K~le~s~~~vR~a~A~~La~l 259 (1075)
||.||..||....-+ .+++.. +++..+.-|.+++.|++||.-++=++-.+
T Consensus 503 vRsaAv~aLskf~ln~~d~~~~----~sv~~~lkRclnD~DdeVRdrAsf~l~~~ 553 (898)
T COG5240 503 VRSAAVQALSKFALNISDVVSP----QSVENALKRCLNDQDDEVRDRASFLLRNM 553 (898)
T ss_pred HHHHHHHHHHHhccCccccccH----HHHHHHHHHHhhcccHHHHHHHHHHHHhh
No 142
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=46.80 E-value=7.9e+02 Score=32.08 Aligned_cols=345 Identities=17% Similarity=0.112 Sum_probs=176.4
Q ss_pred hhHHHHHHHHHHHHHHHhhcCCChhHhHHHHHHHHHHhccCCchhh-HHhHHHHHHhhhcCCCCChhhHHHHHHHHHHHH
Q 001448 56 ESILLWQRKCEDALYSLLILGARRPVRHLASVAMGRIISKGDNISV-YSRVSSLQGFLSDGKKSEPQKVAGAAQCLGELY 134 (1075)
Q Consensus 56 ~di~~~Q~~l~~~L~~ll~~~~g~P~R~l~a~cl~~ly~~GD~~~l-f~~vn~l~~~l~~~k~~s~~~~~aA~~cLG~l~ 134 (1075)
+.+|..-+...+++ -.-.-|=+|+.+|+-++.+=+.-.+-.. =..+...+++++ |+.-+.+.+|+.+++.+.
T Consensus 232 ~~vk~elr~~~~~l----c~d~~~~Vr~~~a~~l~~~a~~~~~~~~~s~v~~~~~~L~~---DdqdsVr~~a~~~~~~l~ 304 (759)
T KOG0211|consen 232 DAVKRELRPIVQSL----CQDDTPMVRRAVASNLGNIAKVLESEIVKSEVLPTLIQLLR---DDQDSVREAAVESLVSLL 304 (759)
T ss_pred HHHHHHHHHHHHhh----ccccchhhHHHHHhhhHHHHHHHHHHHHHhhccHHHhhhhh---cchhhHHHHHHHHHHHHH
Confidence 44454444444444 2223444577777777665543222111 112235555555 556677789999999888
Q ss_pred HHHhhHhhcCHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhcCCCCCc-hhHHHHHHHHHHHHhccCcchHHHHHHHHH
Q 001448 135 RQFGRRITSGLLETTIIAAKLMKFNEEFVRQEALLLLQNALEGSGGSAA-ASAYSEAFRLIMRFAIVDKSFVVRIAGARC 213 (1075)
Q Consensus 135 ~~~G~~l~s~~~e~~~~llK~lK~~~~~~R~~~l~~L~kil~g~g~~~~-~~~~~di~K~~~r~~~~Dks~~Vr~aAa~c 213 (1075)
+-+-+.. +........+++..+.-+..+|+.+...+-..-+-.|.... ...+--.+-. ..|..-.||.+.+.=
T Consensus 305 ~l~~~~~-d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~l-----~~~~~~e~r~a~a~~ 378 (759)
T KOG0211|consen 305 DLLDDDD-DVVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGPSATRTQLVPPVSNL-----LKDEEWEVRYAIAKK 378 (759)
T ss_pred HhcCCch-hhhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhccccCcccchhhHHHH-----hcchhhhhhHHhhcc
Confidence 8776665 33334444455555556788999998888777777775332 1112222332 678888899988654
Q ss_pred HHHHHhhc--CCCcccchhhh-HhhHHhhhccCCChhHHHHHHHHHHHHHHhccCCCCcCCCCCCCCCCCCCChhHHHHH
Q 001448 214 LKAFAHIG--GPCLGVGELDN-SATHCVKAIEDPIASVRDAFAEALGSLLALGMNPQAQVQPKGKGPFPPAKKLEGGLQR 290 (1075)
Q Consensus 214 L~~l~~~~--~~~~~~~dlE~-l~sl~~K~le~s~~~vR~a~A~~La~lLa~~~~~~~~~~~~~k~~~~~~k~l~~~l~~ 290 (1075)
-..+.... ++| .+..++ +.....=...+++..||.+.|.-...+. |- -+ |++ +.+
T Consensus 379 ~~~l~~~l~~~~~--~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~-----p~---~~---k~~----ti~----- 436 (759)
T KOG0211|consen 379 VQKLACYLNASCY--PNIPDSSILPEVQVLVLDNALHVRSALASVITGLS-----PI---LP---KER----TIS----- 436 (759)
T ss_pred hHHHhhhcCcccc--cccchhhhhHHHHHHHhcccchHHHHHhccccccC-----cc---CC---cCc----Ccc-----
Confidence 43333321 122 232223 2333444456788889987665443322 11 11 111 111
Q ss_pred HhhhhhcccCCCCcchhHHHHH---HHHHHHHHHhcccccCCCcchhHHHHHHHHHhccCCCCCHH--HH-HHHHHHHHH
Q 001448 291 HLALPFTRANGAKSKNMRVNLT---LSWVYFLQAIRLKYFHPDSELQDYALQVMDMLRADIFVDSH--AL-ACVLYILRI 364 (1075)
Q Consensus 291 ~Ls~~f~k~~~~~~r~~R~Gv~---~ayv~fl~~lg~~wle~~~~~~~~~~~i~~ll~~~~~~~~~--~r-~~v~~ILr~ 364 (1075)
.+...|+........+||-.+. --+.......|..|+.+ .-+-.+.++.. |.+ .| +.+.||=+.
T Consensus 437 ~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~-----slLp~i~el~~-----d~~wRvr~ail~~ip~l 506 (759)
T KOG0211|consen 437 ELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSN-----SLLPAIVELAE-----DLLWRVRLAILEYIPQL 506 (759)
T ss_pred ccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhh-----hhhhhhhhhcc-----chhHHHHHHHHHHHHHH
Confidence 1122222222111456666555 33333333355444422 11212222211 222 22 445554111
Q ss_pred hh--h-ccCChHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHhcCCChHHHHHHH
Q 001448 365 GV--T-DQMTEPTQRSFLVFLGKQLQAVDASPFMKIAALRTLSYTLKTLGEVPSEFKEVLDSTVVAAVSHSSQLVRIEAA 441 (1075)
Q Consensus 365 ~v--~-~~L~E~~Q~~~~~~l~~~~~~~~~s~~~lv~aL~el~~Ll~~LGsa~~~~~~~l~d~L~~lL~hps~svRi~AA 441 (1075)
.. + +..+|+-+.-...++.+.. . ..-=.+..-+..|+...|+.- ....+...++....+|+|-+|..-+
T Consensus 507 a~q~~~~~~~~~~~~l~~~~l~d~v----~--~Ir~~aa~~l~~l~~~~G~~w--~~~~~i~k~L~~~~q~~y~~R~t~l 578 (759)
T KOG0211|consen 507 ALQLGVEFFDEKLAELLRTWLPDHV----Y--SIREAAARNLPALVETFGSEW--ARLEEIPKLLAMDLQDNYLVRMTTL 578 (759)
T ss_pred HHhhhhHHhhHHHHHHHHhhhhhhH----H--HHHHHHHHHhHHHHHHhCcch--hHHHhhHHHHHHhcCcccchhhHHH
Confidence 11 1 3334442222222222211 0 122235666778899999322 2344556777888899999999999
Q ss_pred HHHHHHHHhCCc
Q 001448 442 LTLRALAEVDPT 453 (1075)
Q Consensus 442 ~cLr~~~~a~Ps 453 (1075)
-|+..++.++=.
T Consensus 579 ~si~~la~v~g~ 590 (759)
T KOG0211|consen 579 FSIHELAEVLGQ 590 (759)
T ss_pred HHHHHHHHHhcc
Confidence 999999865544
No 143
>KOG4035 consensus Coeffector of mDia Rho GTPase, regulates actin polymerization and cell adhesion turnover [Signal transduction mechanisms; Cytoskeleton]
Probab=46.57 E-value=5.7e+02 Score=30.36 Aligned_cols=121 Identities=12% Similarity=0.047 Sum_probs=68.7
Q ss_pred HHHHHHhhHhhcCHHHHHHHHHHHhccC--cHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhccCcchHHHHH
Q 001448 132 ELYRQFGRRITSGLLETTIIAAKLMKFN--EEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVDKSFVVRIA 209 (1075)
Q Consensus 132 ~l~~~~G~~l~s~~~e~~~~llK~lK~~--~~~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~Dks~~Vr~a 209 (1075)
.+|+..|+...-...|.|..+.+..-.. ++. ++++-+++.+.....+..+-. ..+ ++-++=|+|.-
T Consensus 234 ~l~~i~e~~~~~~L~el~~~f~~~~n~q~~~a~--------~nvi~~~l~n~~~~kiFtE~L--ll~--LNR~~DPlril 301 (411)
T KOG4035|consen 234 FLFNIAEDFHKEDLLELCTNFSLATNQQQGSAP--------LNVIQKILENPYSCKIFTEKL--LLK--LNREDDPLRIL 301 (411)
T ss_pred HHHHHcCcccHHHHHHHHHHHHHHHhhhccccc--------HHHHHHHhcCCchHHHHHHHH--HHH--HccCCChHHHH
Confidence 4555555544444555555555554431 111 233444444333333333321 222 34444569999
Q ss_pred HHHHHHHHHh---h--cCCCcccchhhhHhhHHhhhccCCC--hhHHHHHHHHHHHHHHhcc
Q 001448 210 GARCLKAFAH---I--GGPCLGVGELDNSATHCVKAIEDPI--ASVRDAFAEALGSLLALGM 264 (1075)
Q Consensus 210 Aa~cL~~l~~---~--~~~~~~~~dlE~l~sl~~K~le~s~--~~vR~a~A~~La~lLa~~~ 264 (1075)
.++.+.-+.. + ++.+||++|+--+..+..|-+-+-+ +..|.-.=+++-.++-.+.
T Consensus 302 ~hkvl~lild~fg~pat~~mFYtNDlkVLIDIliRel~ni~~gd~lr~~~l~ll~~llknt~ 363 (411)
T KOG4035|consen 302 KHKVLYLILDPFGEPATAKMFYTNDLKVLIDILIRELINIDEGDKLRAIYLFLLKFLLKNTL 363 (411)
T ss_pred HHHHHHHHHhhcCCcchHhHhhhccHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHhccc
Confidence 8887766552 1 2345699999999999999988855 7777766666666663333
No 144
>PF14222 MOR2-PAG1_N: Cell morphogenesis N-terminal
Probab=46.45 E-value=47 Score=41.40 Aligned_cols=75 Identities=17% Similarity=0.286 Sum_probs=60.6
Q ss_pred CCCcchhHHHHHHHHhhcCCChhHHHHHHHHHHHHHccCh-hhHhhhchHHHHHHhhccCCCHH----------HHHHHH
Q 001448 985 PQAVSVHSHVQTLLSTLSSRQPILRHLAVSTLRHLIEKDP-DSVIEERIEGNLFHMLDEETDSE----------YVKSYT 1053 (1075)
Q Consensus 985 P~~v~~~~lV~~L~~~L~S~~~~Lr~aav~cLrqL~qR~a-~~v~~~~le~~Lf~~LD~e~d~~----------l~~~~~ 1053 (1075)
|.++...++|..|+.+.-+.++.+|.+|.++|+.++.+.+ ....-.++-.=+|. +|+..-.. +.++++
T Consensus 464 ~~~i~~~~lielL~R~tvHvd~~I~~~A~~aLk~la~~~p~~~~vi~~Fa~Fif~-~~d~~~~~~~~~~l~~~~~~~~L~ 542 (552)
T PF14222_consen 464 PSSIPFKSLIELLCRGTVHVDPNIRESAAQALKRLARDKPNRQQVITGFARFIFR-FDDKYPSMYDGGYLGSGEIESLLK 542 (552)
T ss_pred CCCCcHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHee-CcccCccchhhhccchHHHHHHHH
Confidence 7788899999999999999999999999999999999884 44445688888888 66666555 666766
Q ss_pred HHhhhhh
Q 001448 1054 LCLAYFS 1060 (1075)
Q Consensus 1054 ~~~~~~~ 1060 (1075)
+..+...
T Consensus 543 lyveLL~ 549 (552)
T PF14222_consen 543 LYVELLE 549 (552)
T ss_pred HHHHHHH
Confidence 6555543
No 145
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=46.16 E-value=5.5e+02 Score=30.07 Aligned_cols=142 Identities=15% Similarity=0.101 Sum_probs=90.1
Q ss_pred HHHHHHHHHHhccCcHH------HHHHHH-HHHHHHHhcCCCCCchhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHH
Q 001448 146 LETTIIAAKLMKFNEEF------VRQEAL-LLLQNALEGSGGSAAASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFA 218 (1075)
Q Consensus 146 ~e~~~~llK~lK~~~~~------~R~~~l-~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~ 218 (1075)
+++...+++...+.+.. +|.++= ..+.+++-. ++ .+|+ .++. ....++.|-.-|...+..+.
T Consensus 124 peil~~L~~gy~~~dial~~g~mlRec~k~e~l~~~iL~-----~~----~f~~-ff~~-~~~~~Fdiasdaf~t~~~ll 192 (335)
T PF08569_consen 124 PEILDILLRGYENPDIALNCGDMLRECIKHESLAKIILY-----SE----CFWK-FFKY-VQLPNFDIASDAFSTFKELL 192 (335)
T ss_dssp THHHHHHHHGGGSTTTHHHHHHHHHHHTTSHHHHHHHHT-----SG----GGGG-HHHH-TTSSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCccccchHHHHHHHHHhhHHHHHHHhC-----cH----HHHH-HHHH-hcCCccHhHHHHHHHHHHHH
Confidence 77777788877764332 222221 112222221 11 3455 4555 56788999999988888876
Q ss_pred hhc----CCCcccchhhhHhhHHhhhccCCChhHHHHHHHHHHHHHHhccCCCCcCCCCCCCCCCCCCChhHHHHHHhhh
Q 001448 219 HIG----GPCLGVGELDNSATHCVKAIEDPIASVRDAFAEALGSLLALGMNPQAQVQPKGKGPFPPAKKLEGGLQRHLAL 294 (1075)
Q Consensus 219 ~~~----~~~~~~~dlE~l~sl~~K~le~s~~~vR~a~A~~La~lLa~~~~~~~~~~~~~k~~~~~~k~l~~~l~~~Ls~ 294 (1075)
... +.|+ ...+|.+....-|.++++||.||+-.=++||++|-...+. .+|.++.+.
T Consensus 193 t~hk~~~a~fl-~~n~d~ff~~~~~Ll~s~NYvtkrqslkLL~ellldr~n~-------------------~vm~~yi~~ 252 (335)
T PF08569_consen 193 TRHKKLVAEFL-SNNYDRFFQKYNKLLESSNYVTKRQSLKLLGELLLDRSNF-------------------NVMTRYISS 252 (335)
T ss_dssp HSSHHHHHHHH-HHTHHHHHHHHHHHCT-SSHHHHHHHHHHHHHHHHSGGGH-------------------HHHHHHTT-
T ss_pred hccHHHHHHHH-HHHHHHHHHHHHHHccCCCeEeehhhHHHHHHHHHchhHH-------------------HHHHHHHCC
Confidence 642 1223 5677888889999999999999999999999999554332 233322222
Q ss_pred --------hhcccCCCCcchhHHHHHHHHHHHHHH
Q 001448 295 --------PFTRANGAKSKNMRVNLTLSWVYFLQA 321 (1075)
Q Consensus 295 --------~f~k~~~~~~r~~R~Gv~~ayv~fl~~ 321 (1075)
.-++.. ++.+|.--++.+..|+..
T Consensus 253 ~~nLkl~M~lL~d~---sk~Iq~eAFhvFKvFVAN 284 (335)
T PF08569_consen 253 PENLKLMMNLLRDK---SKNIQFEAFHVFKVFVAN 284 (335)
T ss_dssp HHHHHHHHHHTT-S----HHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHhcCc---chhhhHHHHHHHHHHHhC
Confidence 234444 789999889999999887
No 146
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=45.57 E-value=2.8e+02 Score=28.74 Aligned_cols=43 Identities=21% Similarity=0.176 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHhccC-cHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHH
Q 001448 145 LLETTIIAAKLMKFN-EEFVRQEALLLLQNALEGSGGSAAASAYSEAFR 192 (1075)
Q Consensus 145 ~~e~~~~llK~lK~~-~~~~R~~~l~~L~kil~g~g~~~~~~~~~di~K 192 (1075)
+|+....+++.+|+. +..+|.|+++.++- +| +.|+-.||.+-+
T Consensus 8 yP~LL~~L~~iLk~e~s~~iR~E~lr~lGi----lG-ALDP~~~k~~~~ 51 (160)
T PF11865_consen 8 YPELLDILLNILKTEQSQSIRREALRVLGI----LG-ALDPYKHKSIQK 51 (160)
T ss_pred hHHHHHHHHHHHHhCCCHHHHHHHHHHhhh----cc-ccCcHHHhcccc
Confidence 788899999999984 57799999988876 66 567766774433
No 147
>KOG1837 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.64 E-value=1.3e+02 Score=41.35 Aligned_cols=112 Identities=17% Similarity=0.094 Sum_probs=76.6
Q ss_pred HHHHHHHHHhhcCCChhHhHHHHHHHHHHhccCCch--hhHHhHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHhhHh
Q 001448 64 KCEDALYSLLILGARRPVRHLASVAMGRIISKGDNI--SVYSRVSSLQGFLSDGKKSEPQKVAGAAQCLGELYRQFGRRI 141 (1075)
Q Consensus 64 ~l~~~L~~ll~~~~g~P~R~l~a~cl~~ly~~GD~~--~lf~~vn~l~~~l~~~k~~s~~~~~aA~~cLG~l~~~~G~~l 141 (1075)
-++.|+.+ .+..++-.+.......+.+++.|-.- .++. -.+.+++...++++..|..|+..+-.+|+..|...
T Consensus 1502 p~v~ql~n--~~~e~~~~~~v~~~li~~i~~~~~a~~~d~~p---l~~k~l~~trss~~~~r~~ai~~~~~l~~~lge~~ 1576 (1621)
T KOG1837|consen 1502 PLVSQLVN--VLLEFYASDIVSKLLIAEIASDSVADKDDLKP---LNQKILKKTRSSSRKARYLAIIQVKLLYTKLGENV 1576 (1621)
T ss_pred hhHHHHHH--hhccchhhhHHHHHHHHHHHhhccCChhhhHH---HHHHHHHHhccccHHHHHHHHHHHHHHHHHhcchh
Confidence 35555554 23444444655555555555543221 1555 34556655567789999999999999999999999
Q ss_pred hcCHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhcCCC
Q 001448 142 TSGLLETTIIAAKLMKFNEEFVRQEALLLLQNALEGSGG 180 (1075)
Q Consensus 142 ~s~~~e~~~~llK~lK~~~~~~R~~~l~~L~kil~g~g~ 180 (1075)
.++.++++..+.+++---+.++-+.+-...+.+=..+|.
T Consensus 1577 ~~lL~q~iPfLaEL~ED~~~~Ve~~~q~li~q~e~~lGE 1615 (1621)
T KOG1837|consen 1577 IVLLPQSIPFLAELMEDEDDEVECLCQKLIRQLEEVLGE 1615 (1621)
T ss_pred HHhhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHhch
Confidence 999999999999999887677766666655554445553
No 148
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=44.60 E-value=1.2e+03 Score=33.58 Aligned_cols=203 Identities=12% Similarity=0.072 Sum_probs=121.2
Q ss_pred chhHHHHHHHHHHHhccCChhhHH--HHHHHHHHHHHHHhhcCCChhHhHHHHHHHHHHhc-cCCch-hhHHhHHHHHHh
Q 001448 36 PLLCFDLLSDLISAIDEEPKESIL--LWQRKCEDALYSLLILGARRPVRHLASVAMGRIIS-KGDNI-SVYSRVSSLQGF 111 (1075)
Q Consensus 36 ~~~~~~wL~~L~~~l~~~~k~di~--~~Q~~l~~~L~~ll~~~~g~P~R~l~a~cl~~ly~-~GD~~-~lf~~vn~l~~~ 111 (1075)
..|..+-|+.|---. .+++++. ..|+.+-+.+.-++.......+|.++-+|+..+-. +|+.. +=|.+|-.+...
T Consensus 1154 a~fAidsLrQLs~kf--le~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~nIkSGWktIF~VLs~ 1231 (1780)
T PLN03076 1154 AIFAMDSLRQLSMKF--LEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFMVFTT 1231 (1780)
T ss_pred HHHHHHHHHHHHHHh--cchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcCcHHHHHHHHH
Confidence 466677777665555 3455543 56888889999999988889999999999996543 45432 345544444443
Q ss_pred hhcCCCCChhhHHHHHHHHHHHHHHHhhHhh----cCHHHHHHHHHHHhccCc---------HHHHHHHHHHHHHHHhcC
Q 001448 112 LSDGKKSEPQKVAGAAQCLGELYRQFGRRIT----SGLLETTIIAAKLMKFNE---------EFVRQEALLLLQNALEGS 178 (1075)
Q Consensus 112 l~~~k~~s~~~~~aA~~cLG~l~~~~G~~l~----s~~~e~~~~llK~lK~~~---------~~~R~~~l~~L~kil~g~ 178 (1075)
.. ++..+...-.|..++..++..+=..+. ..|.+.+.++.+..++.. ..+|..+-...+.-+...
T Consensus 1232 aa--~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La~~~~~~~ 1309 (1780)
T PLN03076 1232 AA--YDDHKNIVLLAFEIIEKIIREYFPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEGDLGSS 1309 (1780)
T ss_pred HH--hCccHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHHhcccccc
Confidence 32 233454445699999999887665454 578888888888776531 223322222211101110
Q ss_pred CC------------------C-----CchhHHHHHHH---HHHHHhccCcchHHHHHHHHHHHHHHhhcCCCcccchhhh
Q 001448 179 GG------------------S-----AAASAYSEAFR---LIMRFAIVDKSFVVRIAGARCLKAFAHIGGPCLGVGELDN 232 (1075)
Q Consensus 179 g~------------------~-----~~~~~~~di~K---~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~~~~~~~~dlE~ 232 (1075)
.. . .+...+-.+|= ..+.....|.-..||-.|...|-......|..|...-.+.
T Consensus 1310 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~~Fs~~~W~~ 1389 (1780)
T PLN03076 1310 SRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHGHLFSLPLWER 1389 (1780)
T ss_pred ccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhccCCHHHHHH
Confidence 00 0 01111223443 2344446699999999999999887776556665444444
Q ss_pred Hhh-HHhhhcc
Q 001448 233 SAT-HCVKAIE 242 (1075)
Q Consensus 233 l~s-l~~K~le 242 (1075)
+.. +.|..||
T Consensus 1390 if~~VLFPIFd 1400 (1780)
T PLN03076 1390 VFESVLFPIFD 1400 (1780)
T ss_pred HHHHHHHHHHH
Confidence 333 5555554
No 149
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=44.20 E-value=4.7e+02 Score=28.74 Aligned_cols=196 Identities=14% Similarity=0.025 Sum_probs=119.3
Q ss_pred ccCCCCchhHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHhhcCCChhHhHHHHHHHHHHhccCCchhhHHhHHHHH
Q 001448 30 SQQSPDPLLCFDLLSDLISAIDEEPKESILLWQRKCEDALYSLLILGARRPVRHLASVAMGRIISKGDNISVYSRVSSLQ 109 (1075)
Q Consensus 30 ~~~~~~~~~~~~wL~~L~~~l~~~~k~di~~~Q~~l~~~L~~ll~~~~g~P~R~l~a~cl~~ly~~GD~~~lf~~vn~l~ 109 (1075)
.++.+++-.....|..|-.....-+ .+-+-+.+.|..+... ++...+-..-|-+..+.+.+|+. | ..++
T Consensus 9 l~~~~~~~~~~~~L~~L~~l~~~~~-----~~~~~v~~~L~~L~~~-~~~~~~~~~~rLl~~lw~~~~r~--f---~~L~ 77 (234)
T PF12530_consen 9 LGKISDPELQLPLLEALPSLACHKN-----VCVPPVLQTLVSLVEQ-GSLELRYVALRLLTLLWKANDRH--F---PFLQ 77 (234)
T ss_pred hcCCCChHHHHHHHHHHHHHhccCc-----cchhHHHHHHHHHHcC-CchhHHHHHHHHHHHHHHhCchH--H---HHHH
Confidence 4667788888888887766553321 3334445555544443 44444778889999999999984 2 3444
Q ss_pred Hhhhc--------CCCC--ChhhHHHHHHHHHHHHHHHhhHhhcCHHHHHHHHHHHh-ccCcHHHHHHHHHHHHHHHhcC
Q 001448 110 GFLSD--------GKKS--EPQKVAGAAQCLGELYRQFGRRITSGLLETTIIAAKLM-KFNEEFVRQEALLLLQNALEGS 178 (1075)
Q Consensus 110 ~~l~~--------~k~~--s~~~~~aA~~cLG~l~~~~G~~l~s~~~e~~~~llK~l-K~~~~~~R~~~l~~L~kil~g~ 178 (1075)
+++.. .+++ .-....+...++-++-+...+ -..+.+..+-..+ +.+.+..+..++.++..+++.-
T Consensus 78 ~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~ 153 (234)
T PF12530_consen 78 PLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAE 153 (234)
T ss_pred HHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHh
Confidence 44432 1222 223335555566666666655 4455666666666 7788889999999999999421
Q ss_pred CCCCchhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhcCCCc---ccchhhhHhhHHhhhccCCChh
Q 001448 179 GGSAAASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGGPCL---GVGELDNSATHCVKAIEDPIAS 247 (1075)
Q Consensus 179 g~~~~~~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~~~~~---~~~dlE~l~sl~~K~le~s~~~ 247 (1075)
- .| ....||.+.+..-.|+...|-..-+ .|..++..+ +.= +..--+.+..++|+.....+..
T Consensus 154 v--vd---~~s~w~vl~~~l~~~~rp~v~~~l~-~l~~l~~~~-~~~~e~~~~~~~~~l~~lW~~~~~~~~~ 218 (234)
T PF12530_consen 154 V--VD---FYSAWKVLQKKLSLDYRPLVLKSLC-SLFALVPQG-AVDSEEYEELKRQILQLLWEYTSSSDVN 218 (234)
T ss_pred h--cc---HHHHHHHHHHhcCCccchHHHHHHH-HHHHHhccc-cCChhhhhHHHHHHHHHHHhhccccccc
Confidence 1 22 5566786666655566666665544 455565542 211 2222335888999998887743
No 150
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=43.74 E-value=3.9e+02 Score=27.70 Aligned_cols=91 Identities=19% Similarity=0.129 Sum_probs=61.0
Q ss_pred ccccCCCCcccchhHHHHHHHHhhhccCCCCchhHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHhhcCCChhHhHH
Q 001448 5 YVREDVPLSRFGVLVAQLESIVASASQQSPDPLLCFDLLSDLISAIDEEPKESILLWQRKCEDALYSLLILGARRPVRHL 84 (1075)
Q Consensus 5 ~~~~~~~~~~~~~~~a~le~~~~~~~~~~~~~~~~~~wL~~L~~~l~~~~k~di~~~Q~~l~~~L~~ll~~~~g~P~R~l 84 (1075)
++.|...=+..+-|++.+.++..+.. +--.+.=+.-+...+..-+.+-..++=......|++++....++++++.
T Consensus 13 ~~~~~~~~~~l~~l~~ri~~LL~s~~-----~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ 87 (165)
T PF08167_consen 13 LLLSAPSKSALHKLVTRINSLLQSKS-----AYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEA 87 (165)
T ss_pred hhhcccCHHHHHHHHHHHHHHhCCCC-----hhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 34444434456778888888876532 2222333444444554445666656667788889999999999999999
Q ss_pred HHHHHHHHhccCCchh
Q 001448 85 ASVAMGRIISKGDNIS 100 (1075)
Q Consensus 85 ~a~cl~~ly~~GD~~~ 100 (1075)
.-.++..||.....++
T Consensus 88 ai~~L~~l~~~~~~~p 103 (165)
T PF08167_consen 88 AIITLTRLFDLIRGKP 103 (165)
T ss_pred HHHHHHHHHHHhcCCC
Confidence 9999999997655543
No 151
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=43.53 E-value=87 Score=30.85 Aligned_cols=123 Identities=15% Similarity=0.136 Sum_probs=69.1
Q ss_pred hhHHHHHHHHHHHHHHh-cccccCCCcchhHHHHHHHHHhccCCCCCHHHH----HHHHHHHHHhhh-ccCChHHH--HH
Q 001448 306 NMRVNLTLSWVYFLQAI-RLKYFHPDSELQDYALQVMDMLRADIFVDSHAL----ACVLYILRIGVT-DQMTEPTQ--RS 377 (1075)
Q Consensus 306 ~~R~Gv~~ayv~fl~~l-g~~wle~~~~~~~~~~~i~~ll~~~~~~~~~~r----~~v~~ILr~~v~-~~L~E~~Q--~~ 377 (1075)
-+|.-++.+++.++... ...| ++++..++.++..+ +..+ ++...+-.+... .......+ ++
T Consensus 3 ~i~~kl~~~l~~i~~~~~P~~W-------p~~l~~l~~~~~~~----~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~ 71 (148)
T PF08389_consen 3 FIRNKLAQVLAEIAKRDWPQQW-------PDFLEDLLQLLQSS----PQHLELVLRILRILPEEITDFRRSSLSQERRRE 71 (148)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTS-------TTHHHHHHHHHHTT----HHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHChhhC-------chHHHHHHHHhccc----hhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHH
Confidence 46777888888888875 4455 46777777777632 2222 333333333321 12222222 12
Q ss_pred HHHHHHhh-----------ccc-CCC-ChhHHHHHHHHHHHHHHHhCCCchh-hH-HHHHHHHHHHhcCCChHHHHHHHH
Q 001448 378 FLVFLGKQ-----------LQA-VDA-SPFMKIAALRTLSYTLKTLGEVPSE-FK-EVLDSTVVAAVSHSSQLVRIEAAL 442 (1075)
Q Consensus 378 ~~~~l~~~-----------~~~-~~~-s~~~lv~aL~el~~Ll~~LGsa~~~-~~-~~l~d~L~~lL~hps~svRi~AA~ 442 (1075)
+-..+... ++. .+. +......+|+.+.+.+. ..+.. +. ..+.+.+++.+.+|+. |.+|+.
T Consensus 72 l~~~l~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~---~~~~~~i~~~~~l~~~~~~l~~~~~--~~~A~~ 146 (148)
T PF08389_consen 72 LKDALRSNSPDILEILSQILSQSSSEANEELVKAALKCLKSWIS---WIPIELIINSNLLNLIFQLLQSPEL--REAAAE 146 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTT---TS-HHHHHSSSHHHHHHHHTTSCCC--HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHH---hCCHHHhccHHHHHHHHHHcCCHHH--HHHHHH
Confidence 22222111 111 111 25677778888888877 33332 22 3489999999988887 999999
Q ss_pred HH
Q 001448 443 TL 444 (1075)
Q Consensus 443 cL 444 (1075)
||
T Consensus 147 cl 148 (148)
T PF08389_consen 147 CL 148 (148)
T ss_dssp HH
T ss_pred hC
Confidence 97
No 152
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=43.52 E-value=5.3e+02 Score=29.83 Aligned_cols=123 Identities=15% Similarity=0.031 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHhhHhhcCHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhccCcchHH
Q 001448 127 AQCLGELYRQFGRRITSGLLETTIIAAKLMKFNEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVDKSFVV 206 (1075)
Q Consensus 127 ~~cLG~l~~~~G~~l~s~~~e~~~~llK~lK~~~~~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~Dks~~V 206 (1075)
+..+-.-|-.+|+.+.....-.+..++-.+-...+..--.++..+.++-..+|. +.++.-+|..+. ++..+
T Consensus 118 L~i~e~~~lpL~~~L~p~l~~li~slLpGLede~sE~~~~~~~ll~~l~~~v~~---~~F~~~lwl~ii------~sp~~ 188 (307)
T PF04118_consen 118 LDIYEKYYLPLGPALRPCLKGLILSLLPGLEDEGSEFFDRTLKLLDKLKEAVGD---KYFWQCLWLCII------TSPSR 188 (307)
T ss_pred HHHHHHHhcCccHHHHHHHHHHHHHhccccccCCchHHHHHHHHHHHHHHhcCh---hHHHHHHHHHHh------cCcch
Confidence 333334444556655555555555555555533333444677778888877773 357888888432 45678
Q ss_pred HHHHHHHHHHHHhhcC-----------CCcccchhhhHhhHHhhhccCCChhHHHHHHHHHHH
Q 001448 207 RIAGARCLKAFAHIGG-----------PCLGVGELDNSATHCVKAIEDPIASVRDAFAEALGS 258 (1075)
Q Consensus 207 r~aAa~cL~~l~~~~~-----------~~~~~~dlE~l~sl~~K~le~s~~~vR~a~A~~La~ 258 (1075)
|..|..-+......-. ..+..+|-+-+.....-+++++|--|++.+=..|=.
T Consensus 189 Rl~al~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Llv~al~~~L~D~~iLVqR~~LDlLl~ 251 (307)
T PF04118_consen 189 RLGALNYLLRRLPKFQNDELSLSSEEQEYCLGPDPGLLVRALCACLEDENILVQRGFLDLLLS 251 (307)
T ss_pred hHHHHHHHHHhCCcccccccccchHHHHHhcCCCccHHHHHHHHHhCCchHHHHHHHHHHHHH
Confidence 8887655544433211 112344555677777778888888888877666544
No 153
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=43.10 E-value=3.7e+02 Score=33.17 Aligned_cols=135 Identities=16% Similarity=0.005 Sum_probs=91.8
Q ss_pred hhhHHHHHHHH---HHHHHHHhhHhhcCHH-HHHHHHHHHhc------c--CcHHHHHHHHHHHHHHHhcCCCCC--chh
Q 001448 120 PQKVAGAAQCL---GELYRQFGRRITSGLL-ETTIIAAKLMK------F--NEEFVRQEALLLLQNALEGSGGSA--AAS 185 (1075)
Q Consensus 120 ~~~~~aA~~cL---G~l~~~~G~~l~s~~~-e~~~~llK~lK------~--~~~~~R~~~l~~L~kil~g~g~~~--~~~ 185 (1075)
.+-+..++.-+ ...++..+..+...+. .+.+-..|.+. + .+...|.-+..+++.+.+...... |-+
T Consensus 335 ~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe~lG~L~~~~p~l~~~d~~ 414 (501)
T PF13001_consen 335 SKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAYETLGLLAKRAPSLFSKDLS 414 (501)
T ss_pred cccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHHHHHHHHHHccCcccccccHH
Confidence 34446677888 8888888866554443 33444556662 1 367899999999999999888654 334
Q ss_pred HHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhcCCCccc----chhhhHhhHHhhhccCCChhHHHHHHHHHHHHH
Q 001448 186 AYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGGPCLGV----GELDNSATHCVKAIEDPIASVRDAFAEALGSLL 260 (1075)
Q Consensus 186 ~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~~~~~~~----~dlE~l~sl~~K~le~s~~~vR~a~A~~La~lL 260 (1075)
.....|. + +.+....||.+.-+||..+.... .-... ..-..+..+..+..++....+|.++.+...+++
T Consensus 415 li~~LF~----s-L~~~~~evr~sIqeALssl~~af-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~R~~avk~an~~f 487 (501)
T PF13001_consen 415 LIEFLFD----S-LEDESPEVRVSIQEALSSLAPAF-KDLPDDEDEQKRLLLELLLLSYIQSEVRSCRYAAVKYANACF 487 (501)
T ss_pred HHHHHHH----H-hhCcchHHHHHHHHHHHHHHHHH-hccccchhHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhC
Confidence 4555555 3 47788999999999999999862 11121 122335556777777888889998888766654
No 154
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=43.10 E-value=1.6e+02 Score=33.66 Aligned_cols=118 Identities=10% Similarity=0.010 Sum_probs=68.0
Q ss_pred CChhHHHHHHHHHHHHHHHhCCCchhhHH-------HHHHHHHHHhcCCChHHHHHHHHHHHHHHHhCCcchhh----HH
Q 001448 391 ASPFMKIAALRTLSYTLKTLGEVPSEFKE-------VLDSTVVAAVSHSSQLVRIEAALTLRALAEVDPTCVSG----LI 459 (1075)
Q Consensus 391 ~s~~~lv~aL~el~~Ll~~LGsa~~~~~~-------~l~d~L~~lL~hps~svRi~AA~cLr~~~~a~Ps~l~~----ll 459 (1075)
.+..++-..|..++.++..-.+-..-+.+ ....++++++.++...++..|+..|-.++...|..... .+
T Consensus 69 ~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l 148 (312)
T PF03224_consen 69 SNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEAL 148 (312)
T ss_dssp --HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHH
Confidence 34456777777788877777654443222 26789999999999999999999999999998887775 56
Q ss_pred HHHHHHHHhhhhhcccccCCcccchhhhhchHHHHHHHHHhhcCCCCCccCCchhHHHH
Q 001448 460 TYGVTTLNALRENVSFEKGSSLMVELDSLHGQATVVAALIFISPKLPLGYPARLPKLVL 518 (1075)
Q Consensus 460 ~~~~~~L~~~~~~l~~~~~~~~~~~~~~~~G~a~aLAALl~~~~~~pLgvp~~~~~~V~ 518 (1075)
...+..|.+..+. ...+-...-..+++.|+..-+.+....-.+....++
T Consensus 149 ~~ll~~L~~~l~~----------~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~ 197 (312)
T PF03224_consen 149 PKLLQWLSSQLSS----------SDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLF 197 (312)
T ss_dssp HHHHHHHH-TT-H----------HHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHhhcC----------CCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHH
Confidence 6666666553211 001111233356666766655555555533333333
No 155
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=42.78 E-value=49 Score=41.46 Aligned_cols=136 Identities=15% Similarity=0.076 Sum_probs=74.5
Q ss_pred HhHHHHHHhhhcCC-CCChhhHHHHHHHHHHHHHHHhhH----------hhcCHHHHHHHHHHHhccC----cHHHHHHH
Q 001448 103 SRVSSLQGFLSDGK-KSEPQKVAGAAQCLGELYRQFGRR----------ITSGLLETTIIAAKLMKFN----EEFVRQEA 167 (1075)
Q Consensus 103 ~~vn~l~~~l~~~k-~~s~~~~~aA~~cLG~l~~~~G~~----------l~s~~~e~~~~llK~lK~~----~~~~R~~~ 167 (1075)
+.+..+.++++..+ ..++..+.+|+-++|.+-..+-.. ......+.+.-+.+.++.+ +..-+..+
T Consensus 431 e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 510 (618)
T PF01347_consen 431 ELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVY 510 (618)
T ss_dssp HHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHH
Confidence 45556666665221 334555567888888888776655 5555556666666666632 23445555
Q ss_pred HHHHHHHHhcCCCCCchhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhcCCCcccchhhhHhhHHhhhccC--CC
Q 001448 168 LLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGGPCLGVGELDNSATHCVKAIED--PI 245 (1075)
Q Consensus 168 l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~~~~~~~~dlE~l~sl~~K~le~--s~ 245 (1075)
+++|++ +|- +.+...+-+ .+.. -.+.+..||.+|+..|..+.... -+.+..+.++.+.+ .+
T Consensus 511 LkaLgN----~g~---~~~i~~l~~-~i~~-~~~~~~~~R~~Ai~Alr~~~~~~--------~~~v~~~l~~I~~n~~e~ 573 (618)
T PF01347_consen 511 LKALGN----LGH---PESIPVLLP-YIEG-KEEVPHFIRVAAIQALRRLAKHC--------PEKVREILLPIFMNTTED 573 (618)
T ss_dssp HHHHHH----HT----GGGHHHHHT-TSTT-SS-S-HHHHHHHHHTTTTGGGT---------HHHHHHHHHHHHH-TTS-
T ss_pred HHHhhc----cCC---chhhHHHHh-Hhhh-ccccchHHHHHHHHHHHHHhhcC--------cHHHHHHHHHHhcCCCCC
Confidence 655555 452 222333222 1111 11357899999999887554432 24677888888776 56
Q ss_pred hhHHHHHHHH
Q 001448 246 ASVRDAFAEA 255 (1075)
Q Consensus 246 ~~vR~a~A~~ 255 (1075)
+++|.|+...
T Consensus 574 ~EvRiaA~~~ 583 (618)
T PF01347_consen 574 PEVRIAAYLI 583 (618)
T ss_dssp HHHHHHHHHH
T ss_pred hhHHHHHHHH
Confidence 7899877543
No 156
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=42.72 E-value=1.3e+02 Score=35.56 Aligned_cols=68 Identities=18% Similarity=0.273 Sum_probs=56.0
Q ss_pred hHHHHHhhHHhhc--cCCCcchhHHHHHHHHhhcCCChhHHHHHHHHHHHHHccChhhHhhhchHHHHHHh
Q 001448 971 KWSVRFTQQLVLF--APQAVSVHSHVQTLLSTLSSRQPILRHLAVSTLRHLIEKDPDSVIEERIEGNLFHM 1039 (1075)
Q Consensus 971 ~eai~clQqL~lF--AP~~v~~~~lV~~L~~~L~S~~~~Lr~aav~cLrqL~qR~a~~v~~~~le~~Lf~~ 1039 (1075)
.+|+++.-.+.-+ +|+.++ ..+|+.+..-...+...+|++++++|.+|+-++|.-+.+.|--..|...
T Consensus 86 ~QALkliR~~l~~~~~~~~~~-~~vvralvaiae~~~D~lr~~cletL~El~l~~P~lv~~~gG~~~L~~~ 155 (371)
T PF14664_consen 86 EQALKLIRAFLEIKKGPKEIP-RGVVRALVAIAEHEDDRLRRICLETLCELALLNPELVAECGGIRVLLRA 155 (371)
T ss_pred HHHHHHHHHHHHhcCCcccCC-HHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHHHHHHcCCHHHHHHH
Confidence 7999999999999 888774 5788888888888999999999999999999999988765333444433
No 157
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=42.42 E-value=56 Score=40.17 Aligned_cols=119 Identities=17% Similarity=0.135 Sum_probs=87.0
Q ss_pred cCHHHHHHHHHHHhccC--cHHHHHHHHHHH---HHHHhcCCCCC----chhHHHHHHHHHHH-H--h-ccCcchHHHHH
Q 001448 143 SGLLETTIIAAKLMKFN--EEFVRQEALLLL---QNALEGSGGSA----AASAYSEAFRLIMR-F--A-IVDKSFVVRIA 209 (1075)
Q Consensus 143 s~~~e~~~~llK~lK~~--~~~~R~~~l~~L---~kil~g~g~~~----~~~~~~di~K~~~r-~--~-~~Dks~~Vr~a 209 (1075)
+.++.+..+++-.+-+. .+-+|..+|+.+ ..+++.++... .+.++...||. .. . . ..-.+...|..
T Consensus 315 ~~~~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~-~~~~~~~~~~~~~~~lR~~ 393 (501)
T PF13001_consen 315 TSFPNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPL-IQDSSSQSNSSEDIELRSL 393 (501)
T ss_pred hCCccHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccc-cccccccCCCcccHHHHHH
Confidence 44566666666655554 667899999999 88888777543 24567777775 21 0 0 11256789999
Q ss_pred HHHHHHHHHhhcCCCcccchhhhHhhHHhhhccCCChhHHHHHHHHHHHHHHhcc
Q 001448 210 GARCLKAFAHIGGPCLGVGELDNSATHCVKAIEDPIASVRDAFAEALGSLLALGM 264 (1075)
Q Consensus 210 Aa~cL~~l~~~~~~~~~~~dlE~l~sl~~K~le~s~~~vR~a~A~~La~lLa~~~ 264 (1075)
+-+|+..|.+.. |.+-.+|+ .+....|++++++..++|-++-++|+.++...-
T Consensus 394 aYe~lG~L~~~~-p~l~~~d~-~li~~LF~sL~~~~~evr~sIqeALssl~~af~ 446 (501)
T PF13001_consen 394 AYETLGLLAKRA-PSLFSKDL-SLIEFLFDSLEDESPEVRVSIQEALSSLAPAFK 446 (501)
T ss_pred HHHHHHHHHccC-cccccccH-HHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHh
Confidence 999999999975 55555663 577888999999999999999999999995543
No 158
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=42.22 E-value=38 Score=25.70 Aligned_cols=29 Identities=21% Similarity=0.171 Sum_probs=24.0
Q ss_pred HHHHHHHhhcCCChhHHHHHHHHHHHHHc
Q 001448 993 HVQTLLSTLSSRQPILRHLAVSTLRHLIE 1021 (1075)
Q Consensus 993 lV~~L~~~L~S~~~~Lr~aav~cLrqL~q 1021 (1075)
-++.|...|.+.+..+++.|+.+|++|..
T Consensus 13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 13 GLPALVELLKSEDEEVVKEAAWALSNLSS 41 (41)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 35667777778899999999999999863
No 159
>PF01465 GRIP: GRIP domain; InterPro: IPR000237 The GRIP (golgin-97, RanBP2alpha,Imh1p and p230/golgin-245) domain [, , ] is found in many large coiled-coil proteins. It has been shown to be sufficient for targeting to the Golgi []. The GRIP domain contains a completely conserved tyrosine residue.; GO: 0005515 protein binding, 0000042 protein targeting to Golgi; PDB: 1R4A_H 1UPT_B.
Probab=41.60 E-value=31 Score=28.35 Aligned_cols=33 Identities=18% Similarity=0.219 Sum_probs=28.1
Q ss_pred chhhhHhhHHhhhccCCChhHHHHHHHHHHHHH
Q 001448 228 GELDNSATHCVKAIEDPIASVRDAFAEALGSLL 260 (1075)
Q Consensus 228 ~dlE~l~sl~~K~le~s~~~vR~a~A~~La~lL 260 (1075)
.|+|-+..+.+|++++.+...|......|+.+|
T Consensus 3 ~~~eYLKNvl~~fl~~~~~~~~~~llpvi~tlL 35 (46)
T PF01465_consen 3 INLEYLKNVLLQFLESREPSEREQLLPVIATLL 35 (46)
T ss_dssp HHHHHHHHHHHHHHTTSS---HHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHH
Confidence 578999999999999999999999999999988
No 160
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=40.77 E-value=4.7e+02 Score=33.67 Aligned_cols=123 Identities=20% Similarity=0.217 Sum_probs=79.1
Q ss_pred HHHHHHhcCCCCCchhHH--HHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhcCCCcccchhhhHhhHHhhhccCCChh
Q 001448 170 LLQNALEGSGGSAAASAY--SEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGGPCLGVGELDNSATHCVKAIEDPIAS 247 (1075)
Q Consensus 170 ~L~kil~g~g~~~~~~~~--~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~~~~~~~~dlE~l~sl~~K~le~s~~~ 247 (1075)
-.+||.||+|-+..=..+ -+-.+...+..+.||+...|..-.-.+ +++ |..++..-.+.++.=-+..+.|++
T Consensus 497 QHeki~RGl~vGiaL~~ygrqe~Ad~lI~el~~dkdpilR~~Gm~t~-alA-----y~GTgnnkair~lLh~aVsD~nDD 570 (929)
T KOG2062|consen 497 QHEKIIRGLAVGIALVVYGRQEDADPLIKELLRDKDPILRYGGMYTL-ALA-----YVGTGNNKAIRRLLHVAVSDVNDD 570 (929)
T ss_pred hHHHHHHHHHHhHHHHHhhhhhhhHHHHHHHhcCCchhhhhhhHHHH-HHH-----HhccCchhhHHHhhcccccccchH
Confidence 356777777755421110 112233455668899998887764332 111 223344446677777778999999
Q ss_pred HHHHHHHHHHHHHHhccCCCCcCCCCCCCCCCCCCChhHHHHHHhhhhhcccCCCCcchhHHHHHHHHHHHHHHhc
Q 001448 248 VRDAFAEALGSLLALGMNPQAQVQPKGKGPFPPAKKLEGGLQRHLALPFTRANGAKSKNMRVNLTLSWVYFLQAIR 323 (1075)
Q Consensus 248 vR~a~A~~La~lLa~~~~~~~~~~~~~k~~~~~~k~l~~~l~~~Ls~~f~k~~~~~~r~~R~Gv~~ayv~fl~~lg 323 (1075)
||+++--.||-+++.-. . .....+. .|+..| +--||.|.+++..-+...-|
T Consensus 571 VrRaAVialGFVl~~dp--~---------------~~~s~V~-lLses~-------N~HVRyGaA~ALGIaCAGtG 621 (929)
T KOG2062|consen 571 VRRAAVIALGFVLFRDP--E---------------QLPSTVS-LLSESY-------NPHVRYGAAMALGIACAGTG 621 (929)
T ss_pred HHHHHHHHheeeEecCh--h---------------hchHHHH-HHhhhc-------ChhhhhhHHHHHhhhhcCCC
Confidence 99999999998874421 1 2344455 666666 67899999999888877776
No 161
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=39.69 E-value=5.5e+02 Score=28.91 Aligned_cols=174 Identities=13% Similarity=0.058 Sum_probs=0.0
Q ss_pred hhHhHHHHHHHHHHhccCCchhhHH-hHHHHHHhhhcCC-CCChhhHHHHHHHHHHHHHHHhhHhhcCHHHHHHHHHHHh
Q 001448 79 RPVRHLASVAMGRIISKGDNISVYS-RVSSLQGFLSDGK-KSEPQKVAGAAQCLGELYRQFGRRITSGLLETTIIAAKLM 156 (1075)
Q Consensus 79 ~P~R~l~a~cl~~ly~~GD~~~lf~-~vn~l~~~l~~~k-~~s~~~~~aA~~cLG~l~~~~G~~l~s~~~e~~~~llK~l 156 (1075)
+.+|.-.=.||+.+...-+...|-+ .|+.+.++.. +| +|.+... .|+..+.++. ++.+--......++..+++..
T Consensus 13 ~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~-~rl~D~~~~~-~~l~gl~~L~-~~~~~~~~~~~~i~~~l~~~~ 89 (262)
T PF14500_consen 13 PIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFC-SRLDDHACVQ-PALKGLLALV-KMKNFSPESAVKILRSLFQNV 89 (262)
T ss_pred HHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHH-HHhccHhhHH-HHHHHHHHHH-hCcCCChhhHHHHHHHHHHhC
Q ss_pred cc--CcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhcCCCcccchhhhHh
Q 001448 157 KF--NEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGGPCLGVGELDNSA 234 (1075)
Q Consensus 157 K~--~~~~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~~~~~~~~dlE~l~ 234 (1075)
.. .....|..+++.+..++..-..... ..-.++.+.....+-+.|+.---.-+.+-+..+.+.. +++...
T Consensus 90 ~~q~~~q~~R~~~~~ll~~l~~~~~~~l~-~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~-------~~~~~~ 161 (262)
T PF14500_consen 90 DVQSLPQSTRYAVYQLLDSLLENHREALQ-SMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEF-------DISEFA 161 (262)
T ss_pred ChhhhhHHHHHHHHHHHHHHHHHhHHHHH-hchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhc-------ccchhH
Q ss_pred hHHhhhccC---------CChh---HHHHHHHHHHHHHHhc
Q 001448 235 THCVKAIED---------PIAS---VRDAFAEALGSLLALG 263 (1075)
Q Consensus 235 sl~~K~le~---------s~~~---vR~a~A~~La~lLa~~ 263 (1075)
.-.|..+.. +|+. ||.-..+.|-..++..
T Consensus 162 e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~ 202 (262)
T PF14500_consen 162 EDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSST 202 (262)
T ss_pred HHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCc
No 162
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=39.23 E-value=59 Score=35.05 Aligned_cols=54 Identities=20% Similarity=0.241 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHhhHhhcCHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhcCC
Q 001448 126 AAQCLGELYRQFGRRITSGLLETTIIAAKLMKFNEEFVRQEALLLLQNALEGSG 179 (1075)
Q Consensus 126 A~~cLG~l~~~~G~~l~s~~~e~~~~llK~lK~~~~~~R~~~l~~L~kil~g~g 179 (1075)
.+.+++.+|+++|..-...+..++..+-++-.+.+-.+|.++=.++++.++++|
T Consensus 20 vl~v~s~lf~~lg~~~~~~l~~~L~~l~~lr~~~~f~~~~~~e~~lgaAi~amG 73 (198)
T PF08161_consen 20 VLNVLSALFEKLGERSSPLLKPILKTLGDLRESEDFSFRKELEQVLGAAIRAMG 73 (198)
T ss_pred HHHHHHHHHHHHhhhccHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHCC
Confidence 678999999999998878888888877777776667799999999999999999
No 163
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=38.95 E-value=1.6e+02 Score=28.71 Aligned_cols=72 Identities=22% Similarity=0.251 Sum_probs=51.2
Q ss_pred HHHHHhhhc--CCCCChhhHHHHHHHHHHHHHHHhhHhhcCHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhcCCC
Q 001448 106 SSLQGFLSD--GKKSEPQKVAGAAQCLGELYRQFGRRITSGLLETTIIAAKLMKFNEEFVRQEALLLLQNALEGSGG 180 (1075)
Q Consensus 106 n~l~~~l~~--~k~~s~~~~~aA~~cLG~l~~~~G~~l~s~~~e~~~~llK~lK~~~~~~R~~~l~~L~kil~g~g~ 180 (1075)
+...+.+.+ ||++...++ -++..+|+|.+..|..+.+..+-++..+.-.+. ...+|..++.+....++.+..
T Consensus 14 ~~f~~~l~d~~g~~~~~ek~-~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~--~~eL~~~al~~W~~~i~~L~~ 87 (107)
T smart00802 14 AVFSNILHDSSGKKPYNEKK-RALRSIGFLIKLMGKHISSALPQIMACLQSALE--IPELRSLALRCWHVLIKTLKE 87 (107)
T ss_pred HHHHHHHcCcccCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHHhCCH
Confidence 344455542 334344454 599999999999998888888876666555554 345999999999998887774
No 164
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=38.52 E-value=2.5e+02 Score=28.60 Aligned_cols=95 Identities=15% Similarity=0.100 Sum_probs=71.1
Q ss_pred ChHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHHHhCCCchh-h-HHHHHHHHHHHhc-CCChHHHHHHHHHHHHH
Q 001448 371 TEPTQRSFLVFLGKQLQAVDASPFMKIAALRTLSYTLKTLGEVPSE-F-KEVLDSTVVAAVS-HSSQLVRIEAALTLRAL 447 (1075)
Q Consensus 371 ~E~~Q~~~~~~l~~~~~~~~~s~~~lv~aL~el~~Ll~~LGsa~~~-~-~~~l~d~L~~lL~-hps~svRi~AA~cLr~~ 447 (1075)
++.+++++++.|-+++.. .|++...-||..+-.++..-|..+.. + .....+.+..++. ++...||--....+..-
T Consensus 35 ~~~~~k~a~ral~krl~~--~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W 112 (142)
T cd03569 35 KDVQPKYAMRALKKRLLS--KNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAW 112 (142)
T ss_pred CCCCHHHHHHHHHHHHcC--CChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHH
Confidence 355789999999998866 55688888999999999999886653 3 3457777888776 78888999999999999
Q ss_pred HHhCCcchh-hHHHHHHHHHH
Q 001448 448 AEVDPTCVS-GLITYGVTTLN 467 (1075)
Q Consensus 448 ~~a~Ps~l~-~ll~~~~~~L~ 467 (1075)
+.+++..+. +.+....+.|.
T Consensus 113 ~~~f~~~~~l~~i~~~y~~L~ 133 (142)
T cd03569 113 ALAFRNKPQLKYVVDTYQILK 133 (142)
T ss_pred HHHhCCCcccHHHHHHHHHHH
Confidence 988876522 33444444443
No 165
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=38.30 E-value=9.3e+02 Score=30.46 Aligned_cols=176 Identities=16% Similarity=0.090 Sum_probs=104.1
Q ss_pred CCCChhhHHHHHHHHHHHHHHHhhHhhcCHHHHHHHHHHHhcc-------CcHHHHHHHHHHHHHHHhcCCCCCchhHHH
Q 001448 116 KKSEPQKVAGAAQCLGELYRQFGRRITSGLLETTIIAAKLMKF-------NEEFVRQEALLLLQNALEGSGGSAAASAYS 188 (1075)
Q Consensus 116 k~~s~~~~~aA~~cLG~l~~~~G~~l~s~~~e~~~~llK~lK~-------~~~~~R~~~l~~L~kil~g~g~~~~~~~~~ 188 (1075)
+|-++.+|.-++.-|+ +.+ ++.|+.+-... .+|- ||.++|-...+.+-..+....... ..+
T Consensus 285 ~Dv~d~IRv~c~~~L~-------dwi-~lvP~yf~k~~-~lry~GW~LSDn~~~vRl~v~Kil~~L~s~~p~~d---~ir 352 (740)
T COG5537 285 IDVDDVIRVLCSMSLR-------DWI-GLVPDYFRKIL-GLRYNGWSLSDNHEGVRLLVSKILLFLCSRIPHTD---AIR 352 (740)
T ss_pred cchhHHHHHHHHHHHH-------HHH-hcchHHHHhhh-cccccccccccchHHHHHHHHHHHHHHHhcCCcch---HHH
Confidence 5667888754444333 344 56777766555 5553 799999998888888887665322 344
Q ss_pred HHHH----HHHHHhccCcchHHHHHHHHHHHHHHhhcCCCcccchhhhHhhHHhhhccCCChhHHHHHHHHHHHHHHhcc
Q 001448 189 EAFR----LIMRFAIVDKSFVVRIAGARCLKAFAHIGGPCLGVGELDNSATHCVKAIEDPIASVRDAFAEALGSLLALGM 264 (1075)
Q Consensus 189 di~K----~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~~~~~~~~dlE~l~sl~~K~le~s~~~vR~a~A~~La~lLa~~~ 264 (1075)
++.- .+..-+-.|-+. ||.++.+.+.++-.-+ ++..++...+.++.|-..-++ ..+|.-.-..+..+.+...
T Consensus 353 ~f~eRFk~rILE~~r~D~d~-VRi~sik~l~~lr~lg--~L~~SeIlIvsscmlDi~pd~-r~~~~E~v~~icK~~aevi 428 (740)
T COG5537 353 RFVERFKDRILEFLRTDSDC-VRICSIKSLCYLRILG--VLSSSEILIVSSCMLDIIPDS-RENIVESVESICKIDAEVI 428 (740)
T ss_pred HHHHHHHHHHHHHHhhccch-hhHHHHHHHHHHHHhc--ccchhHHHHHHHHHhcCCCcc-hHHHHHHHHHHHHHHHHHH
Confidence 4433 456667788888 9999999998887754 778888777777644333222 2234434444555555444
Q ss_pred CCCCcCCCCCCCCCCCCCChhHHHHHHhhhhhcccCCCCcchhHHHHHHHHHHHHHHhc
Q 001448 265 NPQAQVQPKGKGPFPPAKKLEGGLQRHLALPFTRANGAKSKNMRVNLTLSWVYFLQAIR 323 (1075)
Q Consensus 265 ~~~~~~~~~~k~~~~~~k~l~~~l~~~Ls~~f~k~~~~~~r~~R~Gv~~ayv~fl~~lg 323 (1075)
.++. | -..+ ++.++..+..++.+ .+.+..|++--.++....+.
T Consensus 429 kEKi---p-------l~~k-~n~lL~a~~qgse~-----~f~v~~~iFsr~~~llk~v~ 471 (740)
T COG5537 429 KEKI---P-------LATK-TNRLLEAMKQGSER-----YFVVCEEIFSRFVHLLKKVE 471 (740)
T ss_pred Hhhc---c-------hhhh-hhhHHHHHHhhhhc-----cchhHHHHHHHHHHHHHHHH
Confidence 3331 0 0001 22222233344322 35777777777776666654
No 166
>PF14222 MOR2-PAG1_N: Cell morphogenesis N-terminal
Probab=37.53 E-value=9.3e+02 Score=30.23 Aligned_cols=399 Identities=16% Similarity=0.155 Sum_probs=201.2
Q ss_pred HHHHHHHHHHHhccCChhhHHHHH-HHHHHHHHHHhhcCC-------ChhHhHHHHHHHHHHhccCCc---hhhHHhH-H
Q 001448 39 CFDLLSDLISAIDEEPKESILLWQ-RKCEDALYSLLILGA-------RRPVRHLASVAMGRIISKGDN---ISVYSRV-S 106 (1075)
Q Consensus 39 ~~~wL~~L~~~l~~~~k~di~~~Q-~~l~~~L~~ll~~~~-------g~P~R~l~a~cl~~ly~~GD~---~~lf~~v-n 106 (1075)
+|=+-+-|...+...+.+.+.+.+ -++|+-.|+.+...- .-|.|.....-+|.|.+.=-. .++-|+. .
T Consensus 9 ~yI~CrvLieil~q~~~~~l~~~l~~~le~i~F~~lk~~d~~~~~~~~s~~~~~~~~l~AellG~lS~~rF~sVsdRF~~ 88 (552)
T PF14222_consen 9 IYILCRVLIEILKQSPLHSLTEELGDKLEEIVFDQLKTADPVSEQPSTSPLRLANWDLFAELLGVLSEIRFVSVSDRFIA 88 (552)
T ss_pred HHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHHHHhccCccccccccchhHHHHHHHHHHHHHHHHhhhChHHHHHHHH
Confidence 344556778888888887777766 457777777766432 345576777766666654222 2222222 2
Q ss_pred HHHHhhhcCCCCChhhHHHHHHHHHHHHHHHhhHhhcCHHHHH---HHHHHHhccCc--HHHHHHHHHHHHHHHhcCCCC
Q 001448 107 SLQGFLSDGKKSEPQKVAGAAQCLGELYRQFGRRITSGLLETT---IIAAKLMKFNE--EFVRQEALLLLQNALEGSGGS 181 (1075)
Q Consensus 107 ~l~~~l~~~k~~s~~~~~aA~~cLG~l~~~~G~~l~s~~~e~~---~~llK~lK~~~--~~~R~~~l~~L~kil~g~g~~ 181 (1075)
+|..+.+..++.+++. ..-+.|==|-+..-.=.--+++.+ ..+.|...++| ..++.+....|..+|.-+.+.
T Consensus 89 eL~~~~~~~~~~~~~~---~~li~GMr~lrlk~~p~e~~e~s~~Fm~~l~~~f~~~h~~~~ik~A~~~~l~~lLlPvA~~ 165 (552)
T PF14222_consen 89 ELEKLRKDSNDAESKI---ELLIMGMRYLRLKMYPEEAFEESAEFMQSLAKFFLEAHKKSDIKHAYCEVLVELLLPVAAT 165 (552)
T ss_pred HHHHhcccCCchHHHH---HHHHhhcceeeecCCCHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhc
Confidence 4555443112212211 111222111111100011122222 22333333343 337777777777777666554
Q ss_pred Cc-h-------hHHHHHHHHHHHHhccCcchHHHHHH--HHHHHHHHhhcCCCcccchhh-hHhhHHhhhccCCChhHHH
Q 001448 182 AA-A-------SAYSEAFRLIMRFAIVDKSFVVRIAG--ARCLKAFAHIGGPCLGVGELD-NSATHCVKAIEDPIASVRD 250 (1075)
Q Consensus 182 ~~-~-------~~~~di~K~~~r~~~~Dks~~Vr~aA--a~cL~~l~~~~~~~~~~~dlE-~l~sl~~K~le~s~~~vR~ 250 (1075)
+. + .+...||..+.+- .+|.--.-.+- .-|+.-+... .+| .+.+- .+...+.+-+.+- .+|.
T Consensus 166 ~~~evn~P~W~~~v~~i~~~~~~~--~~K~khw~~afPL~t~lLCvS~~--e~F-~~~W~~~~i~~~~~klKdk--~~r~ 238 (552)
T PF14222_consen 166 ATAEVNHPKWKEAVETIYPRAAKM--MSKPKHWNVAFPLVTTLLCVSPK--EFF-LSNWLPSLIESLISKLKDK--ETRP 238 (552)
T ss_pred ccccccccHHHHHHHHHHHHHHHH--HhCcchhhhHHHHHHHHHhcCcH--HHH-HHHHHHHHHHHHHhhcCCh--hhhH
Confidence 42 1 1223334332222 22322221111 2233222222 122 12223 4555666666665 7999
Q ss_pred HHHHHHHHHHHhccCCCCcCCCCCCCCCCCCCChhHHHHHHhhhhhcccC-CCCcchhHHHHHHHHHHHHHHhcccccCC
Q 001448 251 AFAEALGSLLALGMNPQAQVQPKGKGPFPPAKKLEGGLQRHLALPFTRAN-GAKSKNMRVNLTLSWVYFLQAIRLKYFHP 329 (1075)
Q Consensus 251 a~A~~La~lLa~~~~~~~~~~~~~k~~~~~~k~l~~~l~~~Ls~~f~k~~-~~~~r~~R~Gv~~ayv~fl~~lg~~wle~ 329 (1075)
.+..++..++-.+....-.. .++...+++++.+..+ |-++. +-.++| ....+.+|.+++.+|...+
T Consensus 239 ~~l~~l~RLlWvYL~~r~~E-----s~n~T~krL~~i~~~l----fp~~kk~~i~~D--~~~~~~lv~ii~~I~~~~~-- 305 (552)
T PF14222_consen 239 VALECLSRLLWVYLVYRCPE-----SLNNTTKRLDSIFKLL----FPKGKKGWIPRD--PEPLNPLVQIIRFIGYKHL-- 305 (552)
T ss_pred HHHHHHHHHHHHHHhcccCC-----CchHHHHHHHHHHHHH----ccCCCCcccCCC--hhhhhhHHHHHHhHhhhCc--
Confidence 99999999997776222101 1122345678766633 22221 112455 4677888999999985554
Q ss_pred CcchhHHH--HHHHHHhccCC------CCCHH----HHHHHHHHHHHhh--------------------------hccCC
Q 001448 330 DSELQDYA--LQVMDMLRADI------FVDSH----ALACVLYILRIGV--------------------------TDQMT 371 (1075)
Q Consensus 330 ~~~~~~~~--~~i~~ll~~~~------~~~~~----~r~~v~~ILr~~v--------------------------~~~L~ 371 (1075)
+|. ..|.+++.... .+++. .-|.+..|+.+.- .+.++
T Consensus 306 -----df~~~~iI~~LL~~~~~~s~~~~l~pERm~IgIRA~l~Il~~~e~~e~p~~p~~~~~~~~~~~~~~~~~~~~~l~ 380 (552)
T PF14222_consen 306 -----DFAFRNIIFPLLNVSFNGSSLENLNPERMIIGIRAFLAILSDLEQKEKPPPPPPTSDPSGNTLRVKYTPSNEYLS 380 (552)
T ss_pred -----chHHHHHHHHHHccccccccccccChhHHHHHHHHHHHHHHhhccCCCCCCCCCcCCCCCcccccccCccccccc
Confidence 333 34577777322 22333 2377777777732 11222
Q ss_pred hHHH---------HHHHHHHHhhc---c--------------c-C--------------CC-ChhHHHHHHHHHHHHHHH
Q 001448 372 EPTQ---------RSFLVFLGKQL---Q--------------A-V--------------DA-SPFMKIAALRTLSYTLKT 409 (1075)
Q Consensus 372 E~~Q---------~~~~~~l~~~~---~--------------~-~--------------~~-s~~~lv~aL~el~~Ll~~ 409 (1075)
+... .++++.+.+-+ . . . |. +++ --.++.+.-.|+.
T Consensus 381 ~~~~~~~~i~~~~~~~~~~l~~il~~cD~~~G~~~~~~~~~~~~~~~t~~~~f~f~~~~d~~~~~--~~~~~Lf~t~i~a 458 (552)
T PF14222_consen 381 NEIAKNSGIREYYEEFCRALGKILRLCDNTFGSQLWLDEKQSSSKPKTPFSSFSFGRNDDMVTDQ--KPQLDLFRTCIQA 458 (552)
T ss_pred chhhccccHHHHHHHHHHHHHHHHHHHHHHhchhhccCcccccCCCCCCcccccccccccccccc--cchhHHHHHHHHH
Confidence 1111 23333333211 0 0 0 11 111 1222333334443
Q ss_pred hCCCch-h-hHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHhCCcchhhHHHHHHHHHHh
Q 001448 410 LGEVPS-E-FKEVLDSTVVAAVSHSSQLVRIEAALTLRALAEVDPTCVSGLITYGVTTLNA 468 (1075)
Q Consensus 410 LGsa~~-~-~~~~l~d~L~~lL~hps~svRi~AA~cLr~~~~a~Ps~l~~ll~~~~~~L~~ 468 (1075)
+=-.-+ . .-..+.|.|.+...|....||-.|+.+|++++...| ...+++......+=+
T Consensus 459 iPrcL~~~i~~~~lielL~R~tvHvd~~I~~~A~~aLk~la~~~p-~~~~vi~~Fa~Fif~ 518 (552)
T PF14222_consen 459 IPRCLPSSIPFKSLIELLCRGTVHVDPNIRESAAQALKRLARDKP-NRQQVITGFARFIFR 518 (552)
T ss_pred ccccCCCCCcHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHee
Confidence 332212 1 246789999999999999999999999999999999 888888766665533
No 167
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=37.07 E-value=5e+02 Score=29.16 Aligned_cols=115 Identities=13% Similarity=0.077 Sum_probs=82.3
Q ss_pred HHHHHHHHHHhhhccCChHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHhcCCCh
Q 001448 355 LACVLYILRIGVTDQMTEPTQRSFLVFLGKQLQAVDASPFMKIAALRTLSYTLKTLGEVPSEFKEVLDSTVVAAVSHSSQ 434 (1075)
Q Consensus 355 r~~v~~ILr~~v~~~L~E~~Q~~~~~~l~~~~~~~~~s~~~lv~aL~el~~Ll~~LGsa~~~~~~~l~d~L~~lL~hps~ 434 (1075)
+.|+..|+++++..-+....|...++.|.+ +.-.+..++++.- .+..++.=|.+..........-.|+.+-..|..
T Consensus 92 k~~i~~Vc~~~~s~~lns~~Q~agLrlL~n-Ltv~~~~~~~l~~---~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np~~ 167 (254)
T PF04826_consen 92 KMYIPQVCEETVSSPLNSEVQLAGLRLLTN-LTVTNDYHHMLAN---YIPDLLSLLSSGSEKTKVQVLKVLVNLSENPDM 167 (254)
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHc-cCCCcchhhhHHh---hHHHHHHHHHcCChHHHHHHHHHHHHhccCHHH
Confidence 578999999999777888999888888877 4334444555543 455556556555556666777788888889999
Q ss_pred HHHHHHHHHHHHHHHhCCcc-hhhHHHHHHHHHHhhhhhc
Q 001448 435 LVRIEAALTLRALAEVDPTC-VSGLITYGVTTLNALRENV 473 (1075)
Q Consensus 435 svRi~AA~cLr~~~~a~Ps~-l~~ll~~~~~~L~~~~~~l 473 (1075)
+-.+-.+.++..|..-+-.. ...++.+.++...+..+.+
T Consensus 168 ~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~ 207 (254)
T PF04826_consen 168 TRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENI 207 (254)
T ss_pred HHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhh
Confidence 88898888888887655543 5666667776666665443
No 168
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.95 E-value=3.7e+02 Score=34.55 Aligned_cols=151 Identities=19% Similarity=0.154 Sum_probs=100.0
Q ss_pred hhHHHHHHHHHHHHHHHhhcCCChhHhHHHHHHHHHHhccC-CchhhHHhHHHHHHhhhcCCCCChhhHHHHHHHHHHHH
Q 001448 56 ESILLWQRKCEDALYSLLILGARRPVRHLASVAMGRIISKG-DNISVYSRVSSLQGFLSDGKKSEPQKVAGAAQCLGELY 134 (1075)
Q Consensus 56 ~di~~~Q~~l~~~L~~ll~~~~g~P~R~l~a~cl~~ly~~G-D~~~lf~~vn~l~~~l~~~k~~s~~~~~aA~~cLG~l~ 134 (1075)
-.+...+.++.+.|.+.++. --|++|+-++-|.+.+|..+ |..---.-++.|.+++. |++|...+.|+..|-++.
T Consensus 113 l~v~~i~ey~~~Pl~~~l~d-~~~yvRktaa~~vakl~~~~~~~~~~~gl~~~L~~ll~---D~~p~VVAnAlaaL~eI~ 188 (734)
T KOG1061|consen 113 LRVDKITEYLCDPLLKCLKD-DDPYVRKTAAVCVAKLFDIDPDLVEDSGLVDALKDLLS---DSNPMVVANALAALSEIH 188 (734)
T ss_pred EeehHHHHHHHHHHHHhccC-CChhHHHHHHHHHHHhhcCChhhccccchhHHHHHHhc---CCCchHHHHHHHHHHHHH
Confidence 34566677778888766644 45789999999999999863 22222224557777775 778888889999999999
Q ss_pred HHHhhHhhcCHHHHHHHHHHHhcc---CcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHH--hccCcchHHHHH
Q 001448 135 RQFGRRITSGLLETTIIAAKLMKF---NEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRF--AIVDKSFVVRIA 209 (1075)
Q Consensus 135 ~~~G~~l~s~~~e~~~~llK~lK~---~~~~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~--~~~Dks~~Vr~a 209 (1075)
+..-. ...+...-..+-|.+.. =....+..+|..+..-.- .-++|+.-.+-|- -+..-..+|..+
T Consensus 189 e~~~~--~~~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p--------~d~~ea~~i~~r~~p~Lqh~n~avvls 258 (734)
T KOG1061|consen 189 ESHPS--VNLLELNPQLINKLLEALNECTEWGQIFILDCLAEYVP--------KDSREAEDICERLTPRLQHANSAVVLS 258 (734)
T ss_pred HhCCC--CCcccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCC--------CCchhHHHHHHHhhhhhccCCcceEee
Confidence 97765 33444444555555554 345688899988877322 1125555522221 144566788888
Q ss_pred HHHHHHHHHhh
Q 001448 210 GARCLKAFAHI 220 (1075)
Q Consensus 210 Aa~cL~~l~~~ 220 (1075)
+.+.+..+.+.
T Consensus 259 avKv~l~~~~~ 269 (734)
T KOG1061|consen 259 AVKVILQLVKY 269 (734)
T ss_pred hHHHHHHHHHH
Confidence 88888877775
No 169
>smart00755 Grip golgin-97, RanBP2alpha,Imh1p and p230/golgin-245.
Probab=36.41 E-value=49 Score=27.29 Aligned_cols=32 Identities=6% Similarity=0.181 Sum_probs=29.2
Q ss_pred chhhhHhhHHhhhccCCChhHHHHHHHHHHHHH
Q 001448 228 GELDNSATHCVKAIEDPIASVRDAFAEALGSLL 260 (1075)
Q Consensus 228 ~dlE~l~sl~~K~le~s~~~vR~a~A~~La~lL 260 (1075)
.|+|-+..+.+|+|++.+.. |......+|.+|
T Consensus 2 ~n~eYLKNVll~fl~~~e~~-r~~ll~vi~tlL 33 (46)
T smart00755 2 ANFEYLKNVLLQFLTLRESE-RETLLKVISTVL 33 (46)
T ss_pred ccHHHHHHHHHHHhccCcch-HHHHHHHHHHHh
Confidence 57899999999999999977 999999999888
No 170
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=36.22 E-value=5.8e+02 Score=27.52 Aligned_cols=173 Identities=13% Similarity=0.031 Sum_probs=104.7
Q ss_pred CChhhHHHHHHHHHHHHHHHhhcCCChhHhHHHHHHHHHHhccCCchhhHHhHHHHHHhhhcCCCCCh--hhHHHHHHHH
Q 001448 53 EPKESILLWQRKCEDALYSLLILGARRPVRHLASVAMGRIISKGDNISVYSRVSSLQGFLSDGKKSEP--QKVAGAAQCL 130 (1075)
Q Consensus 53 ~~k~di~~~Q~~l~~~L~~ll~~~~g~P~R~l~a~cl~~ly~~GD~~~lf~~vn~l~~~l~~~k~~s~--~~~~aA~~cL 130 (1075)
.|++.-+..|++.+.+.- -.|.+.|.|+-+++=+..=...+|.--+.+ -+..+.. +| ..+..|+..|
T Consensus 2 a~~~~a~~m~~y~k~~~~---f~Gv~~P~~R~lak~~~~~~~~~~~~~~~~---l~~~Lw~-----~~~~E~r~~al~~l 70 (208)
T cd07064 2 ADPERAAAMKAYMKNQFP---FYGIKTPERRALSKPFLKESKLPDKEELWE---LVLELWQ-----QPEREYQYVAIDLL 70 (208)
T ss_pred CCHHHHHHHHHHHhcCCc---cCCCChHHHHHHHHHHHHHcCCCcHHHHHH---HHHHHHc-----chHHHHHHHHHHHH
Confidence 467777888888887762 467888998888888765554444222222 2333443 34 5677788888
Q ss_pred HHHHHHHhhHhhcCHHHHHHHHHHHhcc--CcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhccCcchHHHH
Q 001448 131 GELYRQFGRRITSGLLETTIIAAKLMKF--NEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVDKSFVVRI 208 (1075)
Q Consensus 131 G~l~~~~G~~l~s~~~e~~~~llK~lK~--~~~~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~Dks~~Vr~ 208 (1075)
...++.+. ++-+..+.++++. +=+.+=..+-..++..+. ..+.....+++- ..|...=+|+
T Consensus 71 ~~~~~~~~-------~~~~~~~~~~l~~~~~Wd~vD~~~~~i~g~~~~-----~~~~~~~~l~~W-----~~s~~~W~rR 133 (208)
T cd07064 71 RKYKKFLT-------PEDLPLLEELITTKSWWDTVDSLAKVVGGILLA-----DYPEFEPVMDEW-----STDENFWLRR 133 (208)
T ss_pred HHHHhcCC-------HHHHHHHHHHHcCCchHHHHHHHHHHHhHHHHh-----CChhHHHHHHHH-----HcCCcHHHHH
Confidence 87665442 2224445555554 322222222222222222 122222233332 4678889999
Q ss_pred HHHHHHHHHHhhcCCCcccchhhhHhhHHhhhccCCChhHHHHHHHHHHHHH
Q 001448 209 AGARCLKAFAHIGGPCLGVGELDNSATHCVKAIEDPIASVRDAFAEALGSLL 260 (1075)
Q Consensus 209 aAa~cL~~l~~~~~~~~~~~dlE~l~sl~~K~le~s~~~vR~a~A~~La~lL 260 (1075)
+|+-+.....+ .+|+|.+..+|-..+.++.+-++.|++=.|.++.
T Consensus 134 ~ai~~~l~~~~-------~~~~~~l~~~~~~~~~d~e~fI~KAiGW~LRe~~ 178 (208)
T cd07064 134 TAILHQLKYKE-------KTDTDLLFEIILANLGSKEFFIRKAIGWALREYS 178 (208)
T ss_pred HHHHHHHHHHH-------ccCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHh
Confidence 99865433333 3677888889999999999999999988888865
No 171
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=36.05 E-value=3.5e+02 Score=27.09 Aligned_cols=85 Identities=20% Similarity=0.153 Sum_probs=56.1
Q ss_pred HHHHHHHhhHhhcC---HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhcCCCCCchhHHHH------HHHHHHHHh---
Q 001448 131 GELYRQFGRRITSG---LLETTIIAAKLMKFNEEFVRQEALLLLQNALEGSGGSAAASAYSE------AFRLIMRFA--- 198 (1075)
Q Consensus 131 G~l~~~~G~~l~s~---~~e~~~~llK~lK~~~~~~R~~~l~~L~kil~g~g~~~~~~~~~d------i~K~~~r~~--- 198 (1075)
|.+|+..-++...+ +.++..-++|=|+..+.-++.-+|+.|..++.. |+ +.+.+. +.|+ .+..
T Consensus 19 gy~~~Eia~~t~~s~~~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~-G~---~~f~~~~~~~~~~Ik~-~~~f~g~ 93 (122)
T cd03572 19 GYLYEEIAKLTRKSVGSCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEK-GN---SDFKRELQRNSAQIRE-CANYKGP 93 (122)
T ss_pred hHHHHHHHHHHHcCHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhh-CC---HHHHHHHHHhHHHHHH-HHHcCCC
Confidence 45555555555443 557777888888877788888999999998884 42 233333 3332 2221
Q ss_pred ----ccC-cchHHHHHHHHHHHHHHhh
Q 001448 199 ----IVD-KSFVVRIAGARCLKAFAHI 220 (1075)
Q Consensus 199 ----~~D-ks~~Vr~aAa~cL~~l~~~ 220 (1075)
.+| -...||.+|-+|+..++..
T Consensus 94 ~Dp~~Gd~~~~~VR~~A~El~~~if~~ 120 (122)
T cd03572 94 PDPLKGDSLNEKVREEAQELIKAIFSY 120 (122)
T ss_pred CCcccCcchhHHHHHHHHHHHHHHhcc
Confidence 112 5678999999999988874
No 172
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=35.99 E-value=1.2e+03 Score=31.63 Aligned_cols=170 Identities=13% Similarity=0.120 Sum_probs=99.0
Q ss_pred HHHHHHHhhcCCChhHhHH--------HHHHHHHHhccCCchhhHHhHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHH
Q 001448 66 EDALYSLLILGARRPVRHL--------ASVAMGRIISKGDNISVYSRVSSLQGFLSDGKKSEPQKVAGAAQCLGELYRQF 137 (1075)
Q Consensus 66 ~~~L~~ll~~~~g~P~R~l--------~a~cl~~ly~~GD~~~lf~~vn~l~~~l~~~k~~s~~~~~aA~~cLG~l~~~~ 137 (1075)
-.+|...|...-|.|.++. +|.-|+.+=.+ =++.+-.-++.+.+++. + .+-.-|=+-+.++|.+-.+.
T Consensus 268 ~~sl~~~Iir~I~~~~~~~~d~~g~k~v~~fL~elS~~-~P~l~~~~l~~lv~lld-~--es~~lRnavlei~~n~V~~~ 343 (1251)
T KOG0414|consen 268 SVSLAGNIIRSIGSPEPNEKDCAGPKIVGNFLVELSER-VPKLMLRQLTLLVDLLD-S--ESYTLRNAVLEICANLVASE 343 (1251)
T ss_pred cHHHHHHHHHHhcccchhcccccchhhHHHHHHHHHHH-hHHHHHHHHHHHHHhcC-C--chHHHHHHHHHHHHHHHHHH
Confidence 3455556666666665544 44444444332 34455556777777664 1 12233335566666665544
Q ss_pred hh--HhhcCHHHHHHHHHHHhc----cCcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhccCcchHHHHHHH
Q 001448 138 GR--RITSGLLETTIIAAKLMK----FNEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVDKSFVVRIAGA 211 (1075)
Q Consensus 138 G~--~l~s~~~e~~~~llK~lK----~~~~~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~Dks~~Vr~aAa 211 (1075)
=+ ........+-..++-.+. .-.+.+|+.+++-+.+++.--. ....-..++.-.+++ .+.||+..||..|+
T Consensus 344 l~d~e~~~~sk~~r~~~le~l~erl~Dvsa~vRskVLqv~~~l~~~~s--~p~~~~~eV~~la~g-rl~DkSslVRk~Ai 420 (1251)
T KOG0414|consen 344 LRDEELEEMSKSLRDELLELLRERLLDVSAYVRSKVLQVFRRLFQQHS--IPLGSRTEVLELAIG-RLEDKSSLVRKNAI 420 (1251)
T ss_pred hcchhhhHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHccC--CCccHHHHHHHHHhc-ccccccHHHHHHHH
Confidence 32 111111111112344443 3578999999999999998443 333445666664444 37899999999999
Q ss_pred HHHHHHHhhcCCCc---ccchhhhHhhHHhhhccC
Q 001448 212 RCLKAFAHIGGPCL---GVGELDNSATHCVKAIED 243 (1075)
Q Consensus 212 ~cL~~l~~~~~~~~---~~~dlE~l~sl~~K~le~ 243 (1075)
+-+.-+..+ -||. ...|++.-..=..+.+|.
T Consensus 421 ~Ll~~~L~~-~Pfs~~~~~~~~~~~~E~~~~~~e~ 454 (1251)
T KOG0414|consen 421 QLLSSLLDR-HPFSSELRSDDLRAKLEKELQKLEE 454 (1251)
T ss_pred HHHHHHHhc-CCchhhhcchhhhhhHHHHHHhhhh
Confidence 988777776 3886 445655555555666664
No 173
>PF05536 Neurochondrin: Neurochondrin
Probab=35.68 E-value=9.8e+02 Score=29.94 Aligned_cols=250 Identities=14% Similarity=0.101 Sum_probs=136.4
Q ss_pred hHhHHHHHHHHHHhccCCc------hhhHHhHH--HHHHhhhcCCC-C--C-hhhHHHHHHHHHHHHHHHhhHh--hcCH
Q 001448 80 PVRHLASVAMGRIISKGDN------ISVYSRVS--SLQGFLSDGKK-S--E-PQKVAGAAQCLGELYRQFGRRI--TSGL 145 (1075)
Q Consensus 80 P~R~l~a~cl~~ly~~GD~------~~lf~~vn--~l~~~l~~~k~-~--s-~~~~~aA~~cLG~l~~~~G~~l--~s~~ 145 (1075)
=+.|.+|=.|++=+-+++. +.+|+.|. .++.+|+++.. + . ...+.-|+++|...-. -..+ ...+
T Consensus 19 D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~~--~~~~a~~~~~ 96 (543)
T PF05536_consen 19 DTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFCR--DPELASSPQM 96 (543)
T ss_pred cHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHcC--ChhhhcCHHH
Confidence 5666677666665555433 34667665 67788875431 1 1 2344556666664433 1112 2345
Q ss_pred HHHHHHHHHHhccCcH-HHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhcCCC
Q 001448 146 LETTIIAAKLMKFNEE-FVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGGPC 224 (1075)
Q Consensus 146 ~e~~~~llK~lK~~~~-~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~~~~ 224 (1075)
.+.+..+++.+.+... ..-..++++|..+.. ...+...-+..+..+.....+. + ...+.-.|.+.|..+....+.-
T Consensus 97 ~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias-~~~G~~aLl~~g~v~~L~ei~~-~-~~~~~E~Al~lL~~Lls~~~~~ 173 (543)
T PF05536_consen 97 VSRIPLLLEILSSSSDLETVDDALQCLLAIAS-SPEGAKALLESGAVPALCEIIP-N-QSFQMEIALNLLLNLLSRLGQK 173 (543)
T ss_pred HHHHHHHHHHHHcCCchhHHHHHHHHHHHHHc-CcHhHHHHHhcCCHHHHHHHHH-h-CcchHHHHHHHHHHHHHhcchh
Confidence 5677788888876544 777899999999883 3322322222222222333322 2 3333444555666655543222
Q ss_pred c---ccchhhhHhhHHhhhccCCChhHHHHHHHHHHHHHHhccCCCCcCCCCCCCCCCCCCChhHHHHHHhhhhhcccCC
Q 001448 225 L---GVGELDNSATHCVKAIEDPIASVRDAFAEALGSLLALGMNPQAQVQPKGKGPFPPAKKLEGGLQRHLALPFTRANG 301 (1075)
Q Consensus 225 ~---~~~dlE~l~sl~~K~le~s~~~vR~a~A~~La~lLa~~~~~~~~~~~~~k~~~~~~k~l~~~l~~~Ls~~f~k~~~ 301 (1075)
. +..++..+....-+-+.......+--+-+.|+.+|... +. .+ .......+-..+... .+... +++-
T Consensus 174 ~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~--~~---~~--~~~~~~~~W~~~l~~-gl~~i-L~sr- 243 (543)
T PF05536_consen 174 SWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRS--PI---LP--LESPPSPKWLSDLRK-GLRDI-LQSR- 243 (543)
T ss_pred hhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcC--Cc---cc--cccCChhhhHHHHHH-HHHHH-HhcC-
Confidence 2 23455566666666666666667777788888888554 11 00 000001111222221 22222 2222
Q ss_pred CCcchhHHHHHHHHHHHHHHhcccccCCCcc--hhHHHHHHHHHhc
Q 001448 302 AKSKNMRVNLTLSWVYFLQAIRLKYFHPDSE--LQDYALQVMDMLR 345 (1075)
Q Consensus 302 ~~~r~~R~Gv~~ayv~fl~~lg~~wle~~~~--~~~~~~~i~~ll~ 345 (1075)
.+.+-|-........++..+|..|+-.+.+ -..|.-.+++++.
T Consensus 244 -~~~~~R~~al~Laa~Ll~~~G~~wl~~~~~~~~~~F~~Llv~l~~ 288 (543)
T PF05536_consen 244 -LTPSQRDPALNLAASLLDLLGPEWLFADDKKSGKKFLLLLVNLAC 288 (543)
T ss_pred -CCHHHHHHHHHHHHHHHHHhChHhhcCCCCCCcccHHHHHHHHHH
Confidence 268889999999999999999999866432 1246655555554
No 174
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=34.53 E-value=1.1e+02 Score=37.80 Aligned_cols=96 Identities=23% Similarity=0.188 Sum_probs=70.5
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhcCCCcccchh
Q 001448 151 IAAKLMKFNEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGGPCLGVGEL 230 (1075)
Q Consensus 151 ~llK~lK~~~~~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~~~~~~~~dl 230 (1075)
.+-+++-.-++.+|+.-+.+++-.-.|.|+. .+.+++.- .+.+|-.=.||+||.-.| -|+--.|.
T Consensus 520 ~I~ell~d~ds~lRy~G~fs~alAy~GTgn~---~vv~~lLh----~avsD~nDDVrRAAViAl--------Gfvc~~D~ 584 (926)
T COG5116 520 YINELLYDKDSILRYNGVFSLALAYVGTGNL---GVVSTLLH----YAVSDGNDDVRRAAVIAL--------GFVCCDDR 584 (926)
T ss_pred HHHHHhcCchHHhhhccHHHHHHHHhcCCcc---hhHhhhhe----eecccCchHHHHHHHHhe--------eeeEecCc
Confidence 4445555568999999999999888888853 35666444 467899999999996333 13333455
Q ss_pred hhHhhHHhhhccCCChhHHHHHHHHHHHHHH
Q 001448 231 DNSATHCVKAIEDPIASVRDAFAEALGSLLA 261 (1075)
Q Consensus 231 E~l~sl~~K~le~s~~~vR~a~A~~La~lLa 261 (1075)
+.+..+.==.-|+-|..||..+|-+||-.++
T Consensus 585 ~~lv~tvelLs~shN~hVR~g~AvaLGiaca 615 (926)
T COG5116 585 DLLVGTVELLSESHNFHVRAGVAVALGIACA 615 (926)
T ss_pred chhhHHHHHhhhccchhhhhhhHHHhhhhhc
Confidence 6666666666788999999999999998763
No 175
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=34.18 E-value=1.3e+02 Score=29.18 Aligned_cols=70 Identities=17% Similarity=0.153 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHhCCc-chhhHHHHHHHHH
Q 001448 395 MKIAALRTLSYTLKTLGEVPSEFKEVLDSTVVAAVSHSSQLVRIEAALTLRALAEVDPT-CVSGLITYGVTTL 466 (1075)
Q Consensus 395 ~lv~aL~el~~Ll~~LGsa~~~~~~~l~d~L~~lL~hps~svRi~AA~cLr~~~~a~Ps-~l~~ll~~~~~~L 466 (1075)
--.-+++.++.+|+--|.......-++.-.|...|..|. .|-.|-.|.++|....+. .+.++++..+-.+
T Consensus 31 ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~~~e--L~~~al~~W~~~i~~L~~~~l~~ll~~~~~~i 101 (107)
T smart00802 31 EKKRALRSIGFLIKLMGKHISSALPQIMACLQSALEIPE--LRSLALRCWHVLIKTLKEEELGPLLDQIFAAI 101 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchh--HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 356788899999997776666677788888888888775 999999999999998876 7777777665544
No 176
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=33.61 E-value=56 Score=33.98 Aligned_cols=59 Identities=22% Similarity=0.260 Sum_probs=41.7
Q ss_pred CcchHHHHHHHHHHHHHHhhcCCCc-ccchhhhHhhHHhhhccCCChhHHHHHHHHHHHHH
Q 001448 201 DKSFVVRIAGARCLKAFAHIGGPCL-GVGELDNSATHCVKAIEDPIASVRDAFAEALGSLL 260 (1075)
Q Consensus 201 Dks~~Vr~aAa~cL~~l~~~~~~~~-~~~dlE~l~sl~~K~le~s~~~vR~a~A~~La~lL 260 (1075)
++...+...+.+|++++.++. ..+ .--+-......+...+++++..||..+.+.|+.+.
T Consensus 127 ~~~~~~~~~~l~Clkal~n~~-~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 127 EEDIDIEHECLRCLKALMNTK-YGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp TTCHHHHHHHHHHHHHHTSSH-HHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHccH-HHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 577788889999999999863 222 10011235567788899999999999999998764
No 177
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=32.09 E-value=1.3e+03 Score=30.27 Aligned_cols=161 Identities=14% Similarity=0.149 Sum_probs=106.1
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhccCc-chHHHHHHHHHHHHHHhhcCCCc---ccchhhhHhhH
Q 001448 161 EFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVDK-SFVVRIAGARCLKAFAHIGGPCL---GVGELDNSATH 236 (1075)
Q Consensus 161 ~~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~Dk-s~~Vr~aAa~cL~~l~~~~~~~~---~~~dlE~l~sl 236 (1075)
..+|.-+...++.=+. .. .....-...|+...+ -++|. +++||.++++.+.-++... .|. -..=+|++-..
T Consensus 501 RiiRRRVa~ilg~Wvs-vq--~~~e~k~l~Y~a~ln-LL~d~~D~vV~Ltt~~tlkl~vDD~-nF~~dsFlp~lenlf~~ 575 (978)
T KOG1993|consen 501 RIIRRRVAWILGQWVS-VQ--QKLELKPLLYCAFLN-LLQDQNDLVVRLTTARTLKLVVDDW-NFSEDSFLPYLENLFVL 575 (978)
T ss_pred hHHHHHHHHHHhhhhh-ee--chHhHHHHHHHHHHH-hcCccccceeehHHHHHHHHhhhhc-cCChhhhhhhHHHHHHH
Confidence 4466666666666554 22 233467778885444 48886 9999999999999998853 343 12345889999
Q ss_pred HhhhccC-CChhHHHHHHHHHHHHHHhccCCCCcCCCCCCCCCCCCCChhHHHHHHhhhhhcccCCCCcchhHHHHHHHH
Q 001448 237 CVKAIED-PIASVRDAFAEALGSLLALGMNPQAQVQPKGKGPFPPAKKLEGGLQRHLALPFTRANGAKSKNMRVNLTLSW 315 (1075)
Q Consensus 237 ~~K~le~-s~~~vR~a~A~~La~lLa~~~~~~~~~~~~~k~~~~~~k~l~~~l~~~Ls~~f~k~~~~~~r~~R~Gv~~ay 315 (1075)
|||-++. ...++|..+=.+++.++...-..- .-....+-.++..-.=.+.+ -.=.|.++-...
T Consensus 576 lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~I--------------~P~~~~ivq~lp~LWe~s~~--e~lLr~alL~~L 639 (978)
T KOG1993|consen 576 LFKLLKAVEECDTKTSVLNLLSTLIERVSEHI--------------APYASTIVQYLPLLWEESEE--EPLLRCALLATL 639 (978)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhh--------------hHHHHHHHHHHHHHHhhhcc--CcHHHHHHHHHH
Confidence 9999988 557899999999999996543210 01222222133322222222 466788999999
Q ss_pred HHHHHHhcccccCCCcchhHHHHHHHHHhcc
Q 001448 316 VYFLQAIRLKYFHPDSELQDYALQVMDMLRA 346 (1075)
Q Consensus 316 v~fl~~lg~~wle~~~~~~~~~~~i~~ll~~ 346 (1075)
-.|++.+|..= ++.-.|+-.|+++-..
T Consensus 640 ~~lV~alg~qS----~~~~~fL~pVIel~~D 666 (978)
T KOG1993|consen 640 RNLVNALGAQS----FEFYPFLYPVIELSTD 666 (978)
T ss_pred HHHHHHhccCC----ccchHHHHHHHHHhcC
Confidence 99999999552 3445788778877663
No 178
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=31.77 E-value=2.8e+02 Score=31.49 Aligned_cols=82 Identities=17% Similarity=0.118 Sum_probs=56.8
Q ss_pred HHHhhhcCCCCChhhHHHHHHHHHHHHHHHhhHhhcCHHHHHHHHHHHhcc--CcHHHHHHHHHHHHHHHhcCCCCCchh
Q 001448 108 LQGFLSDGKKSEPQKVAGAAQCLGELYRQFGRRITSGLLETTIIAAKLMKF--NEEFVRQEALLLLQNALEGSGGSAAAS 185 (1075)
Q Consensus 108 l~~~l~~~k~~s~~~~~aA~~cLG~l~~~~G~~l~s~~~e~~~~llK~lK~--~~~~~R~~~l~~L~kil~g~g~~~~~~ 185 (1075)
.+.++.+-+++|+-.||-+.+|+|+| ..+..+..+.|.|.. -|.-+|.++..+|+.| | ++.
T Consensus 189 I~al~~~l~~~SalfrhEvAfVfGQl----------~s~~ai~~L~k~L~d~~E~pMVRhEaAeALGaI----a---~e~ 251 (289)
T KOG0567|consen 189 INALIDGLADDSALFRHEVAFVFGQL----------QSPAAIPSLIKVLLDETEHPMVRHEAAEALGAI----A---DED 251 (289)
T ss_pred HHHHHHhcccchHHHHHHHHHHHhhc----------cchhhhHHHHHHHHhhhcchHHHHHHHHHHHhh----c---CHH
Confidence 34444444577888899999999954 356788889998875 4778999999988763 3 343
Q ss_pred HHHHHHHHHHHHhccCcchHHHHHHH
Q 001448 186 AYSEAFRLIMRFAIVDKSFVVRIAGA 211 (1075)
Q Consensus 186 ~~~di~K~~~r~~~~Dks~~Vr~aAa 211 (1075)
..++.|. .+.|-+-.||-.+.
T Consensus 252 -~~~vL~e----~~~D~~~vv~esc~ 272 (289)
T KOG0567|consen 252 -CVEVLKE----YLGDEERVVRESCE 272 (289)
T ss_pred -HHHHHHH----HcCCcHHHHHHHHH
Confidence 4455553 47787777775544
No 179
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=30.93 E-value=4.6e+02 Score=34.52 Aligned_cols=132 Identities=14% Similarity=0.083 Sum_probs=91.6
Q ss_pred hHHHHHHHHHHHHHHHhhHhhcCHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhccC
Q 001448 122 KVAGAAQCLGELYRQFGRRITSGLLETTIIAAKLMKFNEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVD 201 (1075)
Q Consensus 122 ~~~aA~~cLG~l~~~~G~~l~s~~~e~~~~llK~lK~~~~~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~D 201 (1075)
+.-|--++|+.+=+ ..++-.++.....++-.+--.+.-+|-+.+.++.-.+.-.+.-.++ -..-+.+. .=+...|
T Consensus 887 yl~~LshVl~~vP~---~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~-~~~Tlvp~-lLsls~~ 961 (1030)
T KOG1967|consen 887 YLEALSHVLTNVPK---QVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTE-HLSTLVPY-LLSLSSD 961 (1030)
T ss_pred HHHHHHHHHhcCCH---HhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchH-HHhHHHHH-HHhcCCC
Confidence 44455555554433 4556667777777777777677788999999999999988865553 24444452 2222344
Q ss_pred -c--chHHHHHHHHHHHHHHhhcCCCcccchhhhHhhHHhhhccCCChhHHHHHHHHHHH
Q 001448 202 -K--SFVVRIAGARCLKAFAHIGGPCLGVGELDNSATHCVKAIEDPIASVRDAFAEALGS 258 (1075)
Q Consensus 202 -k--s~~Vr~aAa~cL~~l~~~~~~~~~~~dlE~l~sl~~K~le~s~~~vR~a~A~~La~ 258 (1075)
+ .+.||-.|.+||.+|.+..++-.-.+.-+.+.+...|.+|+.---||.-++++=..
T Consensus 962 ~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~~ 1021 (1030)
T KOG1967|consen 962 NDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQN 1021 (1030)
T ss_pred CCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhhh
Confidence 3 38999999999999988432222223445899999999999999999988876443
No 180
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=30.88 E-value=7.7e+02 Score=31.68 Aligned_cols=100 Identities=17% Similarity=0.158 Sum_probs=69.3
Q ss_pred hHHHHHHHHHHHHHHHh--hHhhcCHHHHHHHHHHHhcc----CcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHH
Q 001448 122 KVAGAAQCLGELYRQFG--RRITSGLLETTIIAAKLMKF----NEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIM 195 (1075)
Q Consensus 122 ~~~aA~~cLG~l~~~~G--~~l~s~~~e~~~~llK~lK~----~~~~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~ 195 (1075)
-|-+-+.+.|-+.+.+- .+++..++-.++.+.-++-- ..+-+|+.+++.+.||+.--.... .--.++-..+.
T Consensus 315 lRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk~~--~~r~ev~~lv~ 392 (1128)
T COG5098 315 LRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSKTV--GRRHEVIRLVG 392 (1128)
T ss_pred HHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCccccc--chHHHHHHHHH
Confidence 33456667777766553 24667777788888877753 467899999999999998433222 12334455445
Q ss_pred HHhccCcchHHHHHHHHHHHHHHhhcCCCc
Q 001448 196 RFAIVDKSFVVRIAGARCLKAFAHIGGPCL 225 (1075)
Q Consensus 196 r~~~~Dks~~Vr~aAa~cL~~l~~~~~~~~ 225 (1075)
|. +.||+..||+-|.+.+.-|.... ||-
T Consensus 393 r~-lqDrss~VRrnaikl~SkLL~~H-PF~ 420 (1128)
T COG5098 393 RR-LQDRSSVVRRNAIKLCSKLLMRH-PFA 420 (1128)
T ss_pred HH-hhhhhHHHHHHHHHHHHHHHhcC-Chh
Confidence 54 89999999999999887777653 774
No 181
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=30.63 E-value=4e+02 Score=28.15 Aligned_cols=113 Identities=13% Similarity=0.079 Sum_probs=66.6
Q ss_pred CChhHhHHHHHHHHHHhccC-CchhhHHhHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHhhHhhcCHHHHHHHHHHH
Q 001448 77 ARRPVRHLASVAMGRIISKG-DNISVYSRVSSLQGFLSDGKKSEPQKVAGAAQCLGELYRQFGRRITSGLLETTIIAAKL 155 (1075)
Q Consensus 77 ~g~P~R~l~a~cl~~ly~~G-D~~~lf~~vn~l~~~l~~~k~~s~~~~~aA~~cLG~l~~~~G~~l~s~~~e~~~~llK~ 155 (1075)
-|=+.|++.-.||-+++... ++..+.+ +.+.+..|=+|+..++.-+.-.|..+-......+.......+..+-|.
T Consensus 39 DGLelRK~ayE~lytlLd~~~~~~~~~~----~~~~v~~GL~D~~DIk~L~~~~l~kl~~~~p~~v~~~Ld~l~~~l~~~ 114 (169)
T PF08623_consen 39 DGLELRKAAYECLYTLLDTCLSRIDISE----FLDRVEAGLKDEHDIKMLCHLMLSKLAQLAPEEVLQRLDSLVEPLRKT 114 (169)
T ss_dssp GGGHHHHHHHHHHHHHHHSTCSSS-HHH----HHHHHHHTTSS-HHHHHHHHHHHHHHHHS-HHHHHHCCTTTHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHhCCHHH----HHHHHHhhcCCcHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Confidence 37788999999999998742 2332222 233333354448888877888888887777766666666666666666
Q ss_pred h----ccC--------cHHHHHHHHHHHHHHHhcCCCCCchh-HHHHHHHH
Q 001448 156 M----KFN--------EEFVRQEALLLLQNALEGSGGSAAAS-AYSEAFRL 193 (1075)
Q Consensus 156 l----K~~--------~~~~R~~~l~~L~kil~g~g~~~~~~-~~~di~K~ 193 (1075)
+ |.+ ..-.-.+++++..++=..+.++.... ...++|..
T Consensus 115 L~~k~k~~AvkQE~Ek~~E~~rs~lr~~~~l~~~i~~~~~~~~~~~~f~~~ 165 (169)
T PF08623_consen 115 LSKKLKENAVKQEIEKQQELIRSVLRAVKALNSKIPGAESSPNKWNEFVEW 165 (169)
T ss_dssp HH----TTS-HHHHHHHHHHHHHHHHHHHHH-HSSTS-SSSH-HHHHHHHH
T ss_pred hhccCCCCcccccHHHHHHHHHHHHHHHHHHHHhCcccccCHHHHHHHHHH
Confidence 6 321 12233467777777633344333333 67777774
No 182
>COG2733 Predicted membrane protein [Function unknown]
Probab=29.69 E-value=1e+03 Score=28.45 Aligned_cols=203 Identities=12% Similarity=0.073 Sum_probs=94.2
Q ss_pred cCCCCchhHHHHHHH--------------HHHHhccCChhhHHHHHHHHHHHHHHHhhcC-CChhHhHHHHHHHHHHhcc
Q 001448 31 QQSPDPLLCFDLLSD--------------LISAIDEEPKESILLWQRKCEDALYSLLILG-ARRPVRHLASVAMGRIISK 95 (1075)
Q Consensus 31 ~~~~~~~~~~~wL~~--------------L~~~l~~~~k~di~~~Q~~l~~~L~~ll~~~-~g~P~R~l~a~cl~~ly~~ 95 (1075)
++..=+.++-+|+.. +.+.+..++.++++.. ++....+-|... -+|| +|+.|..++..
T Consensus 106 ~~~~~a~~igewls~~en~~~v~~~t~~l~~~~~~lld~~~iq~~---ik~~v~~~i~e~~~~~~----~~~vL~~l~~d 178 (415)
T COG2733 106 RRADIASRIGEWLSQPENAQRVSQETLKLLSQLLELLDDDDIQRV---IKRAVIRAIAEVYLGPT----AGRVLESLTAD 178 (415)
T ss_pred HhcCHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHhCHHHHHHH---HHHHHHHHHhcccccch----HHHHHHHHHhc
Confidence 334456777777765 3356667777777554 455555555433 3444 56667777776
Q ss_pred CCchhhHHhHHHHHHhhhcC-CCCChhhHHHHHHHHHHHHHHHhhHhhcCHHH--HHHHHHHHhccCcHHHHHHHHHHHH
Q 001448 96 GDNISVYSRVSSLQGFLSDG-KKSEPQKVAGAAQCLGELYRQFGRRITSGLLE--TTIIAAKLMKFNEEFVRQEALLLLQ 172 (1075)
Q Consensus 96 GD~~~lf~~vn~l~~~l~~~-k~~s~~~~~aA~~cLG~l~~~~G~~l~s~~~e--~~~~llK~lK~~~~~~R~~~l~~L~ 172 (1075)
+---.++| ++.+++... +++.+... .+...---+=+..+ .+.. +++.+.| . . ++.+.+..+.
T Consensus 179 ~r~q~l~D---~~~~~L~r~~~~~~v~~~-i~~~i~r~~~ee~p-----~f~~~~~~~~v~~---~--~-I~~a~~~~~D 243 (415)
T COG2733 179 DRHQALLD---KLIDRLIRWLLNDKVREF-IAAVIVRYLEEEHP-----LFAPIIIVSLVGK---R--D-ISDAVNSFLD 243 (415)
T ss_pred ccHHHHHH---HHHHHHHHHhhhhhhHHH-HHHHHHHHHHhcCc-----cchhhhhHHHHhh---c--h-HHHHHHHHHH
Confidence 55456666 555555411 12223221 11111111111222 1110 1111111 0 1 4556666666
Q ss_pred HHHhcCCCCCchhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhcCCCc--ccchh-hhHhhHHhhhccCCChhHH
Q 001448 173 NALEGSGGSAAASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGGPCL--GVGEL-DNSATHCVKAIEDPIASVR 249 (1075)
Q Consensus 173 kil~g~g~~~~~~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~~~~~--~~~dl-E~l~sl~~K~le~s~~~vR 249 (1075)
.+.+.=.-.+..+..|-+.+.+-|- .+|.++.-|.-+.+ .-+... +-+ ...|+ ..+.....+-.|++++-+|
T Consensus 244 ~v~~~p~h~~rk~~~R~~~~~i~~L-~~Dp~~~~r~e~iK---~~~~~~-~~i~~~~~~~w~~~~~~l~~D~e~~~s~l~ 318 (415)
T COG2733 244 EVRRDPDHKMRKDFDRFLFDLIDDL-YHDPGMAARAEAIK---SYLKED-EAIATAAGDMWTSLSEWLKEDYESEDSMLR 318 (415)
T ss_pred HHHhCcCccchHHHHHHHHHHHHHH-hcCHHHHHHHHHHH---HHHhcC-hHHHHHHHHHHHHHHHHHHhcccCchhHHH
Confidence 6666111112333444333333332 55666655544332 111111 000 00110 1233445566788999999
Q ss_pred HHHHHHHHHHH
Q 001448 250 DAFAEALGSLL 260 (1075)
Q Consensus 250 ~a~A~~La~lL 260 (1075)
...++.+-.+-
T Consensus 319 ~~l~~~~~~~G 329 (415)
T COG2733 319 KRLARAVQSVG 329 (415)
T ss_pred HHHHHHHHHHH
Confidence 88888776654
No 183
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=29.27 E-value=3.6e+02 Score=28.52 Aligned_cols=73 Identities=14% Similarity=0.187 Sum_probs=59.5
Q ss_pred hHHHHHhhHHhhccCCCcchhHHHHHHHHhhcCCChhHHHHHHHHHHHHHccChhhHhh--hchHHHHHHhhccCC
Q 001448 971 KWSVRFTQQLVLFAPQAVSVHSHVQTLLSTLSSRQPILRHLAVSTLRHLIEKDPDSVIE--ERIEGNLFHMLDEET 1044 (1075)
Q Consensus 971 ~eai~clQqL~lFAP~~v~~~~lV~~L~~~L~S~~~~Lr~aav~cLrqL~qR~a~~v~~--~~le~~Lf~~LD~e~ 1044 (1075)
.-|..|+..+.=.++..+|...+..++...|+. +...|-.+...|-.|++..|.++.+ +.+.+.|=..|...+
T Consensus 45 K~ayE~lytlLd~~~~~~~~~~~~~~v~~GL~D-~~DIk~L~~~~l~kl~~~~p~~v~~~Ld~l~~~l~~~L~~k~ 119 (169)
T PF08623_consen 45 KAAYECLYTLLDTCLSRIDISEFLDRVEAGLKD-EHDIKMLCHLMLSKLAQLAPEEVLQRLDSLVEPLRKTLSKKL 119 (169)
T ss_dssp HHHHHHHHHHHHSTCSSS-HHHHHHHHHHTTSS--HHHHHHHHHHHHHHHHS-HHHHHHCCTTTHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHhhcCC-cHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHhhccC
Confidence 788999999999999999999999999999988 9999999999999999999999987 466666666665444
No 184
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.58 E-value=8.7e+02 Score=31.37 Aligned_cols=104 Identities=15% Similarity=0.048 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhcCCC
Q 001448 145 LLETTIIAAKLMKFNEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGGPC 224 (1075)
Q Consensus 145 ~~e~~~~llK~lK~~~~~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~~~~ 224 (1075)
....++.++|-.+......|..|++.+.. --.+.+..-+.- -++.+++|+...||..++-|...+.......
T Consensus 84 a~~avnt~~kD~~d~np~iR~lAlrtm~~-------l~v~~i~ey~~~-Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~ 155 (734)
T KOG1061|consen 84 AILAVNTFLKDCEDPNPLIRALALRTMGC-------LRVDKITEYLCD-PLLKCLKDDDPYVRKTAAVCVAKLFDIDPDL 155 (734)
T ss_pred HHhhhhhhhccCCCCCHHHHHHHhhceee-------EeehHHHHHHHH-HHHHhccCCChhHHHHHHHHHHHhhcCChhh
Confidence 44567778888888889999998877543 123455555555 4677799999999999999999998864333
Q ss_pred c-ccchhhhHhhHHhhhccCCChhHHHHHHHHHHHHH
Q 001448 225 L-GVGELDNSATHCVKAIEDPIASVRDAFAEALGSLL 260 (1075)
Q Consensus 225 ~-~~~dlE~l~sl~~K~le~s~~~vR~a~A~~La~lL 260 (1075)
. -.+-.|.+..+.. ++|+.|=-.+-.+|.++.
T Consensus 156 ~~~~gl~~~L~~ll~----D~~p~VVAnAlaaL~eI~ 188 (734)
T KOG1061|consen 156 VEDSGLVDALKDLLS----DSNPMVVANALAALSEIH 188 (734)
T ss_pred ccccchhHHHHHHhc----CCCchHHHHHHHHHHHHH
Confidence 4 3456667777766 667655444444445544
No 185
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=27.21 E-value=2.7e+02 Score=26.22 Aligned_cols=60 Identities=20% Similarity=0.093 Sum_probs=49.8
Q ss_pred CcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhccC--cchHHHHHHHHHHHHHHhh
Q 001448 159 NEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVD--KSFVVRIAGARCLKAFAHI 220 (1075)
Q Consensus 159 ~~~~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~D--ks~~Vr~aAa~cL~~l~~~ 220 (1075)
+|-.+|..+=..+..|++.-|.+-+ .....|.|+ +..++.| |++.++..|..+|.++-.+
T Consensus 18 ~h~~LRd~AA~lL~~I~~~~~~~~~-~L~~Ri~~t-l~k~l~d~~~~~~t~YGAi~gL~~lG~~ 79 (92)
T PF07571_consen 18 NHWALRDFAASLLAQICRKFSSSYP-TLQPRITRT-LLKALLDPKKPLGTHYGAIVGLSALGPE 79 (92)
T ss_pred chHHHHHHHHHHHHHHHHHhccccc-hHHHHHHHH-HHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence 6889999999999999999997654 678888886 4445665 8899999999999999664
No 186
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=26.98 E-value=7.8e+02 Score=26.10 Aligned_cols=154 Identities=18% Similarity=0.279 Sum_probs=82.7
Q ss_pred HHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhcCCCc-ccchhhhHhhHHhhhccCC--ChhHHHHHHHHHHHHHHhcc
Q 001448 188 SEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGGPCL-GVGELDNSATHCVKAIEDP--IASVRDAFAEALGSLLALGM 264 (1075)
Q Consensus 188 ~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~~~~~-~~~dlE~l~sl~~K~le~s--~~~vR~a~A~~La~lLa~~~ 264 (1075)
.+++-.+.|.+ .+|==.||..|++|+..+.....+-+ +-.+.|.+..+.-.--+++ ......++-+.+ .+|
T Consensus 6 ~~~~~~llrqa-~EKiDrvR~~A~~~l~~ll~~~~~~~~~ip~~~~L~~i~~~~~~~~~~w~~~~~~F~~l~-~LL---- 79 (193)
T PF12612_consen 6 QQIIGGLLRQA-AEKIDRVREVAGKCLQRLLHSQDPTIPHIPHREELQDIFPSESEASLNWSSSSEYFPRLV-KLL---- 79 (193)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCccccCCCcHHHHHHHcccccccccccCCHHHHHHHHH-HHh----
Confidence 33333344443 46666799999999999995432211 2223333333211111100 111233333322 333
Q ss_pred CCCCcCCCCCCCCCCCCCChhHHHHHHhhhhhcccCCCCcchhHHHHHHHHHHHHHHhcccccCCCcchhHHHHHHHHHh
Q 001448 265 NPQAQVQPKGKGPFPPAKKLEGGLQRHLALPFTRANGAKSKNMRVNLTLSWVYFLQAIRLKYFHPDSELQDYALQVMDML 344 (1075)
Q Consensus 265 ~~~~~~~~~~k~~~~~~k~l~~~l~~~Ls~~f~k~~~~~~r~~R~Gv~~ayv~fl~~lg~~wle~~~~~~~~~~~i~~ll 344 (1075)
..+ .+...+..|++-+.|+.+..+.-.-..|.+.|++... ++......++..+++++
T Consensus 80 ------------------~~~-~y~~~ll~Glv~S~G~~tesl~~~s~~AL~~~~~~~~----~~~~~~~~v~~~l~~il 136 (193)
T PF12612_consen 80 ------------------DLP-EYRYSLLSGLVVSAGGLTESLVRASSAALLSYLRELS----DSPEELEQVLSDLLSIL 136 (193)
T ss_pred ------------------ccH-HHHHHHHhHHHhcCCCCchhHHHHHHHHHHHHHHHhh----cCHHHHHHHHHHHHHHH
Confidence 112 2222455566666655567777777788888887541 11223446777777777
Q ss_pred ccCCCCCHH---HHHHHHHHHHHhhhccC
Q 001448 345 RADIFVDSH---ALACVLYILRIGVTDQM 370 (1075)
Q Consensus 345 ~~~~~~~~~---~r~~v~~ILr~~v~~~L 370 (1075)
..+...|-. ..+.+.++|..++-+.+
T Consensus 137 ~~~~~~dRv~vP~l~tl~~Ll~~~~~~~~ 165 (193)
T PF12612_consen 137 KENLRNDRVVVPLLKTLDFLLSSGVFDSL 165 (193)
T ss_pred HHhCCCCCeeecHHHHHHHHHhCcchhcc
Confidence 755554443 57999999999885444
No 187
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=26.62 E-value=8.2e+02 Score=29.36 Aligned_cols=156 Identities=20% Similarity=0.183 Sum_probs=101.2
Q ss_pred HHHHHHHhccCCchhhHHhHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHhhHhhcCHHHHHHHHHHHhccCcHHHHH
Q 001448 86 SVAMGRIISKGDNISVYSRVSSLQGFLSDGKKSEPQKVAGAAQCLGELYRQFGRRITSGLLETTIIAAKLMKFNEEFVRQ 165 (1075)
Q Consensus 86 a~cl~~ly~~GD~~~lf~~vn~l~~~l~~~k~~s~~~~~aA~~cLG~l~~~~G~~l~s~~~e~~~~llK~lK~~~~~~R~ 165 (1075)
-+|-..|=.-||.. +-|.+-.+||+..|..+..+++ |..-++..|+.|. ++..+.+.+-+-+.-.-+.++|.
T Consensus 8 y~~~e~l~~a~dk~---q~v~~y~~il~~~k~~~k~k~l-asq~ip~~fk~fp----~la~~a~da~~d~~ed~d~~ir~ 79 (460)
T KOG2213|consen 8 YEFYEILSEATDKS---QHVDDYEGILKAVKGTSKEKRL-ASQFIPRFFKHFP----SLADEAIDAQLDLCEDDDVGIRR 79 (460)
T ss_pred HHHHHHHHhhchhh---hhHHHHHHHHHHhhcchHHHHH-HHHHHHHHHhhCc----hhhhHHHHhhhccccccchhhHH
Confidence 34444454556665 7888999999977776777774 8888999998765 45667777888888888999999
Q ss_pred HHHHHHHHHHhcCCCCCchhHHHHHHHHHHH---------HhccCcchHHHHHHHHHHHHHHhhc----CCCcccchhhh
Q 001448 166 EALLLLQNALEGSGGSAAASAYSEAFRLIMR---------FAIVDKSFVVRIAGARCLKAFAHIG----GPCLGVGELDN 232 (1075)
Q Consensus 166 ~~l~~L~kil~g~g~~~~~~~~~di~K~~~r---------~~~~Dks~~Vr~aAa~cL~~l~~~~----~~~~~~~dlE~ 232 (1075)
.+++-|-..+.| ... +-..|+.-+..+ .+.. -+-.+| ++|+..+...- +.+++ .++|-
T Consensus 80 qaik~lp~fc~~--d~~--~rv~d~l~qLLnk~sl~~Lf~~~~~-~D~~ir---ek~l~fi~tKl~~l~~e~L~-kevE~ 150 (460)
T KOG2213|consen 80 QAIKGLPLFCKG--DAL--SRVNDVLVQLLNKASLTGLFGQIEV-GDEQIR---EKVLKFIRTKLITLKGEVLT-KEVER 150 (460)
T ss_pred HHHhccchhccC--chh--hhhHHHHHHHHHHHHHHHHHhhhhh-hhHHHH---HHHHHHHHHHhhcccHHHhh-hHHHH
Confidence 999999999987 222 112233221111 1111 133455 67777766531 12223 56664
Q ss_pred -HhhHHhhhccCCChhHHHHHHHHHHH
Q 001448 233 -SATHCVKAIEDPIASVRDAFAEALGS 258 (1075)
Q Consensus 233 -l~sl~~K~le~s~~~vR~a~A~~La~ 258 (1075)
+.+.++|+|++-+-+--..+=.-|+.
T Consensus 151 ~iv~eikkal~dVtgeef~lfm~~L~~ 177 (460)
T KOG2213|consen 151 HIVDEIKKALEDVTGEEFTLFMDILAS 177 (460)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 88899999998877654444444444
No 188
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=26.17 E-value=79 Score=25.37 Aligned_cols=41 Identities=20% Similarity=0.322 Sum_probs=29.9
Q ss_pred HHHHHHHhhcCCCcccchhhhHhhHHhhhccCCChhHHHHHHHH
Q 001448 212 RCLKAFAHIGGPCLGVGELDNSATHCVKAIEDPIASVRDAFAEA 255 (1075)
Q Consensus 212 ~cL~~l~~~~~~~~~~~dlE~l~sl~~K~le~s~~~vR~a~A~~ 255 (1075)
||+..++.. +|-+-... .+.+..-+.+.|++..||.|+=++
T Consensus 1 k~l~~iv~~-dp~ll~~~--~v~~~i~~rl~D~s~~VR~aav~l 41 (42)
T PF12765_consen 1 KALSSIVEK-DPTLLDSS--DVQSAIIRRLSDSSPSVREAAVDL 41 (42)
T ss_pred ChHHHHHhc-CccccchH--HHHHHHHHHhcCCChHHHHHHHHH
Confidence 467777775 34443222 788899999999999999998654
No 189
>KOG1851 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.48 E-value=6.5e+02 Score=35.16 Aligned_cols=181 Identities=15% Similarity=0.085 Sum_probs=105.5
Q ss_pred hhhHHHHHHHHHHHHHHHhhHhhcCHHHHHHHHHHHhc-----cCcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHH
Q 001448 120 PQKVAGAAQCLGELYRQFGRRITSGLLETTIIAAKLMK-----FNEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLI 194 (1075)
Q Consensus 120 ~~~~~aA~~cLG~l~~~~G~~l~s~~~e~~~~llK~lK-----~~~~~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~ 194 (1075)
+..+..|..|.+-+-.+ ...++....+++.+| +..-..|.+++.-++.++=.---..-+.--.||+|.
T Consensus 1501 d~a~~~a~~~~~lm~~~------~~~~~l~~e~l~~l~~~~~~~~tw~vr~avl~fl~~~vy~n~Fv~~~~~r~dI~~l- 1573 (1710)
T KOG1851|consen 1501 DLAKNSALLCHSLMSLS------WIGHHLQPEFLRDLKMLTADSSTWRVRSAVLKFLQTVVYSNIFVSQELRRDDIRKL- 1573 (1710)
T ss_pred hHHHHHHHHHHHHHHhh------ccchhhHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHH-
Confidence 33444677777755432 223333444444444 234578999999888876533222233446799996
Q ss_pred HHHhccCcchHHHHHHHHHHHHHHhhcCCCcccchhhhHhhHHh-hhccCCChhHHHHHHHHHHHHHHhccCCCCcCCCC
Q 001448 195 MRFAIVDKSFVVRIAGARCLKAFAHIGGPCLGVGELDNSATHCV-KAIEDPIASVRDAFAEALGSLLALGMNPQAQVQPK 273 (1075)
Q Consensus 195 ~r~~~~Dks~~Vr~aAa~cL~~l~~~~~~~~~~~dlE~l~sl~~-K~le~s~~~vR~a~A~~La~lLa~~~~~~~~~~~~ 273 (1075)
.-+.++|....||--|++||.-+.+. .++...+ +....... +.-.+.++.-+|++.--||++.-. . |-.. |
T Consensus 1574 ~~s~l~D~~i~vre~Aa~~Lsgl~~~--s~~~~~~-~k~d~~~~~~~s~s~~~i~~HgavlgLgA~Vla-f-Py~v--P- 1645 (1710)
T KOG1851|consen 1574 LESLLNDDQIEVREEAAKCLSGLLQG--SKFQFVS-DKRDTTSNILQSKSKDEIKAHGAVLGLGAIVLA-F-PYVV--P- 1645 (1710)
T ss_pred HHHHHcchHHHHHHHHHHHHHHHHhc--cccccch-HhhhhhhhhhhhcchHHHHhhhhHHHHHHHHHh-c-cccc--h-
Confidence 55669999999999999999998884 4553222 22222222 233345666777777777776622 2 2100 0
Q ss_pred CCCCCCCCCChhHHHHHHhhhhhcccCCCCcchhHHHHHHHHHHHHHHhcccccCC
Q 001448 274 GKGPFPPAKKLEGGLQRHLALPFTRANGAKSKNMRVNLTLSWVYFLQAIRLKYFHP 329 (1075)
Q Consensus 274 ~k~~~~~~k~l~~~l~~~Ls~~f~k~~~~~~r~~R~Gv~~ayv~fl~~lg~~wle~ 329 (1075)
. =+...+. .++ -|-+- +--++-.++..|..|=+...-.|-|+
T Consensus 1646 -------~-wip~~L~-~Ls-~fa~e----~~~i~~tvkktvseFrrth~D~W~~~ 1687 (1710)
T KOG1851|consen 1646 -------L-WIPKPLM-NLS-SFARE----SAAIKQTVKKTVSEFRRTHADTWREH 1687 (1710)
T ss_pred -------h-hhHHHHH-HHH-hhcCC----chHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 0 1122221 121 23222 34567788889999988888888765
No 190
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=25.14 E-value=1.3e+03 Score=28.03 Aligned_cols=223 Identities=17% Similarity=0.213 Sum_probs=113.8
Q ss_pred cccCCCcchhHHHHHHHHHhccCCCCCHH-HHHHHHHHHHHhhhccCChHHHHHHHHHHHhhcc--cCCC-ChhHHHHHH
Q 001448 325 KYFHPDSELQDYALQVMDMLRADIFVDSH-ALACVLYILRIGVTDQMTEPTQRSFLVFLGKQLQ--AVDA-SPFMKIAAL 400 (1075)
Q Consensus 325 ~wle~~~~~~~~~~~i~~ll~~~~~~~~~-~r~~v~~ILr~~v~~~L~E~~Q~~~~~~l~~~~~--~~~~-s~~~lv~aL 400 (1075)
..+++ .....+.++..++..+.+..+. --|||-.++ .++++.+.+-+. .++..+.+.+. +-+| |++.-=...
T Consensus 18 ~di~p--~~~~ll~~Lf~~i~~~~s~ENeylMk~iMRvl-~~~~e~~~p~~~-~il~~L~~il~~v~kNPsnP~FnHylF 93 (435)
T PF03378_consen 18 ADIQP--FAQQLLQNLFALIEKPGSAENEYLMKCIMRVL-SVLQEDILPIAV-EILQHLTAILKEVSKNPSNPRFNHYLF 93 (435)
T ss_dssp GGTTC--CHHHHHHHHHHHHHTT-STC-HHHHHHHHHHH-HHSTTTTGGGHH-HHHHHHHHHHHHHHTS---HHHHHHHH
T ss_pred HHhhh--hHHHHHHHHHHHHhcCCCccchHHHHHHHHHH-HHhHHHHHHHHH-HHHHHHHHHHHHHHhCCCCcchhhhHH
Confidence 34444 3456666666666644432222 346655543 112333322222 22333333221 1233 566666678
Q ss_pred HHHHHHHHHhCCCchh----hHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHhCC-cchhhHHHHHHHHHHhhhhhccc
Q 001448 401 RTLSYTLKTLGEVPSE----FKEVLDSTVVAAVSHSSQLVRIEAALTLRALAEVDP-TCVSGLITYGVTTLNALRENVSF 475 (1075)
Q Consensus 401 ~el~~Ll~~LGsa~~~----~~~~l~d~L~~lL~hps~svRi~AA~cLr~~~~a~P-s~l~~ll~~~~~~L~~~~~~l~~ 475 (1075)
+.++.||+...++.++ +-+.+..++..+|.....---=|.=.-|..+....| ..+++.....+..|-+-
T Consensus 94 Esi~~lir~~~~~~~~~v~~~E~~L~P~f~~ILq~dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p------ 167 (435)
T PF03378_consen 94 ESIGALIRFVCEADPEAVSQFEEALFPPFQEILQQDVQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSP------ 167 (435)
T ss_dssp HHHHHHHHHS-GGGHH---HHHHHHHHHHHHHHHTT-TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSG------
T ss_pred HHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCc------
Confidence 8899999987766554 455667677777777755433334444444444444 23333332222222111
Q ss_pred ccCCcccchhhhhchHHHHHHHHHhh-cCCCCC-ccCCchhHHHHHHHHHhhhccCCchhhHHHHHHHHHHHHHHhhccC
Q 001448 476 EKGSSLMVELDSLHGQATVVAALIFI-SPKLPL-GYPARLPKLVLEVSKKMLTESSRNTLAATVEKEAGWLLLSSLLASM 553 (1075)
Q Consensus 476 ~~~~~~~~~~~~~~G~a~aLAALl~~-~~~~pL-gvp~~~~~~V~~~A~~LLk~~~~~~~~a~~~~qagWiLi~sLmtl~ 553 (1075)
..-.-.|.--|+.-|+.+ .++.|- .+..+....|+.+-..||.+..+. .-|.-|+.+++.+.
T Consensus 168 --------~lWe~~gniPalvrLL~a~i~k~~~~i~~~~~l~~iLgvFQkLi~sk~~D--------~~gF~LL~~iv~~~ 231 (435)
T PF03378_consen 168 --------ALWERRGNIPALVRLLQAYIKKDPSFIVANNQLEPILGVFQKLIASKAND--------HYGFDLLESIVENL 231 (435)
T ss_dssp --------GGGGSTTTHHHHHHHHHHHHHHHGGG----S-CHHHHHHHHHHHT-TTCH--------HHHHHHHHHHHHHS
T ss_pred --------chhccCCCcCcHHHHHHHHHHhCchhhcchhhHHHHHHHHHHHHCCCCcc--------hHHHHHHHHHHHHC
Confidence 011113444555555554 233333 345577889999999999988743 23667999999888
Q ss_pred ChhhHhhcHHHHHHHHHhhc
Q 001448 554 PKEELEDQVFDILSLWATLF 573 (1075)
Q Consensus 554 g~~~Vk~hlsqLLlLWk~~l 573 (1075)
|.+.+...+++++.+-=.-+
T Consensus 232 p~~~l~~yl~~I~~lll~RL 251 (435)
T PF03378_consen 232 PPEALEPYLKQIFTLLLTRL 251 (435)
T ss_dssp -HHHHGGGHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHH
Confidence 99999999999765543333
No 191
>smart00543 MIF4G Middle domain of eukaryotic initiation factor 4G (eIF4G). Also occurs in NMD2p and CBP80. The domain is rich in alpha-helices and may contain multiple alpha-helical repeats. In eIF4G, this domain binds eIF4A, eIF3, RNA and DNA. Ponting (TiBS) "Novel eIF4G domain homologues (in press)
Probab=24.92 E-value=7.7e+02 Score=25.34 Aligned_cols=125 Identities=14% Similarity=0.015 Sum_probs=67.5
Q ss_pred HHhhhccCCCCchhHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHhhcCCChhHhHHHHHHHHHHhcc--CCchhhH
Q 001448 25 IVASASQQSPDPLLCFDLLSDLISAIDEEPKESILLWQRKCEDALYSLLILGARRPVRHLASVAMGRIISK--GDNISVY 102 (1075)
Q Consensus 25 ~~~~~~~~~~~~~~~~~wL~~L~~~l~~~~k~di~~~Q~~l~~~L~~ll~~~~g~P~R~l~a~cl~~ly~~--GD~~~lf 102 (1075)
++..+..++..--..=..+..+.+..+..-+.-+...|..++..+.. ....-.-.+....+.++.+|.. .+...+|
T Consensus 41 i~~~~~~~~~~~~~ya~L~~~l~~~~~~f~~~ll~~~~~~f~~~~e~--~~~~~~~~~~~~i~fl~eL~~~~~i~~~~i~ 118 (200)
T smart00543 41 IFEKAVEEPNFIPAYARLCALLNAKNPDFGSLLLERLQEEFEKGLES--EEESDKQRRLGLVRFLGELYNFQVLTSKIIL 118 (200)
T ss_pred HHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhhhhHHhHHHHHHHHHHcccCcHHHHH
Confidence 33444433322223334444444444444444455555554443210 1111222356788999998875 5667899
Q ss_pred HhHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHhhHhh-cCHHHHHHHHHH
Q 001448 103 SRVSSLQGFLSDGKKSEPQKVAGAAQCLGELYRQFGRRIT-SGLLETTIIAAK 154 (1075)
Q Consensus 103 ~~vn~l~~~l~~~k~~s~~~~~aA~~cLG~l~~~~G~~l~-s~~~e~~~~llK 154 (1075)
+.++.+..... ..+ .+.. .-.+.|+..+...-|..+. .-.++.+..++.
T Consensus 119 ~~l~~ll~~~~-~~~-~~~~-~~~ve~l~~lL~~~G~~l~~~~~~~~~~~~l~ 168 (200)
T smart00543 119 ELLKELLNDLT-KLD-PPRS-DFSVECLLSLLPTCGKDLEREKSPKLLDEILE 168 (200)
T ss_pred HHHHHHHhccC-CCC-CCCc-HHHHHHHHHHHHHhhHHHcCcccHHHHHHHHH
Confidence 98888777654 212 1222 2378888888888888887 344444444433
No 192
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=24.55 E-value=7.3e+02 Score=28.04 Aligned_cols=82 Identities=13% Similarity=0.052 Sum_probs=62.9
Q ss_pred hHhhcCHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhcCCCCC----chhHHHHHHHHHHHHhcc--------CcchHH
Q 001448 139 RRITSGLLETTIIAAKLMKFNEEFVRQEALLLLQNALEGSGGSA----AASAYSEAFRLIMRFAIV--------DKSFVV 206 (1075)
Q Consensus 139 ~~l~s~~~e~~~~llK~lK~~~~~~R~~~l~~L~kil~g~g~~~----~~~~~~di~K~~~r~~~~--------Dks~~V 206 (1075)
..+....+..+..++.++-..+..+|...+++|..++..+..+. ...-..+++..+.+.++. |.+..+
T Consensus 111 ~~i~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~L 190 (282)
T PF10521_consen 111 PWISQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLEL 190 (282)
T ss_pred chHHHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHH
Confidence 45667788889999999998899999999999999999888544 112233444435555666 788889
Q ss_pred HHHHHHHHHHHHhh
Q 001448 207 RIAGARCLKAFAHI 220 (1075)
Q Consensus 207 r~aAa~cL~~l~~~ 220 (1075)
-.+|-.|+..|++.
T Consensus 191 l~~ay~~L~~L~~~ 204 (282)
T PF10521_consen 191 LQAAYPALLSLLKT 204 (282)
T ss_pred HHHHHHHHHHHHHh
Confidence 88999999998875
No 193
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=24.16 E-value=5.9e+02 Score=25.36 Aligned_cols=82 Identities=16% Similarity=0.106 Sum_probs=64.0
Q ss_pred ChHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHHHhCCCch-hhHH-HHHHHHHHHhcC---CChHHHHHHHHHHH
Q 001448 371 TEPTQRSFLVFLGKQLQAVDASPFMKIAALRTLSYTLKTLGEVPS-EFKE-VLDSTVVAAVSH---SSQLVRIEAALTLR 445 (1075)
Q Consensus 371 ~E~~Q~~~~~~l~~~~~~~~~s~~~lv~aL~el~~Ll~~LGsa~~-~~~~-~l~d~L~~lL~h---ps~svRi~AA~cLr 445 (1075)
++.+.+++++.|-+++.+. |++...-||..+-.++..-|..+. .+.. ...+.+..++.. .+..||--+...+.
T Consensus 31 ~~~~~k~a~raL~krl~~~--n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~ 108 (133)
T cd03561 31 KPNGPKEAARAIRKKIKYG--NPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELIL 108 (133)
T ss_pred CCCCHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Confidence 3778899999999988654 678999999999999999998664 3433 444458888874 46678888888888
Q ss_pred HHHHhCCcc
Q 001448 446 ALAEVDPTC 454 (1075)
Q Consensus 446 ~~~~a~Ps~ 454 (1075)
....+++..
T Consensus 109 ~W~~~f~~~ 117 (133)
T cd03561 109 AWSESFGGH 117 (133)
T ss_pred HHHHHhcCC
Confidence 888887764
No 194
>KOG1851 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.92 E-value=2.2e+03 Score=30.39 Aligned_cols=146 Identities=19% Similarity=0.130 Sum_probs=83.1
Q ss_pred HHHHHHHHHHhhhccCChHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHHHhCCCc-hhhHHHHHHHHHHHhcCCC
Q 001448 355 LACVLYILRIGVTDQMTEPTQRSFLVFLGKQLQAVDASPFMKIAALRTLSYTLKTLGEVP-SEFKEVLDSTVVAAVSHSS 433 (1075)
Q Consensus 355 r~~v~~ILr~~v~~~L~E~~Q~~~~~~l~~~~~~~~~s~~~lv~aL~el~~Ll~~LGsa~-~~~~~~l~d~L~~lL~hps 433 (1075)
..|.+++-+..++. .-|.++++.+.. ....+-+-+.-..+|.-+...+..--... ..-.+.+...+.+.+....
T Consensus 1508 ~~~~~lm~~~~~~~----~l~~e~l~~l~~-~~~~~~tw~vr~avl~fl~~~vy~n~Fv~~~~~r~dI~~l~~s~l~D~~ 1582 (1710)
T KOG1851|consen 1508 LLCHSLMSLSWIGH----HLQPEFLRDLKM-LTADSSTWRVRSAVLKFLQTVVYSNIFVSQELRRDDIRKLLESLLNDDQ 1582 (1710)
T ss_pred HHHHHHHHhhccch----hhHHHHHHHHHH-HhcccchHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHcchH
Confidence 47888876555554 347888888775 22222222333444554444444433332 2346778888999998888
Q ss_pred hHHHHHHHHHHHHHHHhCCcchhhHHHHHHHHHHhhhhhcccccCCcccchhhhhchHHHHHHHHHhhcCCCCCccCCch
Q 001448 434 QLVRIEAALTLRALAEVDPTCVSGLITYGVTTLNALRENVSFEKGSSLMVELDSLHGQATVVAALIFISPKLPLGYPARL 513 (1075)
Q Consensus 434 ~svRi~AA~cLr~~~~a~Ps~l~~ll~~~~~~L~~~~~~l~~~~~~~~~~~~~~~~G~a~aLAALl~~~~~~pLgvp~~~ 513 (1075)
..||..||.||.-+....=-.... +-.+..+... ......-...||-.+|++|++-+.|-. +|.-+
T Consensus 1583 i~vre~Aa~~Lsgl~~~s~~~~~~---~k~d~~~~~~--------~s~s~~~i~~HgavlgLgA~VlafPy~---vP~wi 1648 (1710)
T KOG1851|consen 1583 IEVREEAAKCLSGLLQGSKFQFVS---DKRDTTSNIL--------QSKSKDEIKAHGAVLGLGAIVLAFPYV---VPLWI 1648 (1710)
T ss_pred HHHHHHHHHHHHHHHhccccccch---Hhhhhhhhhh--------hhcchHHHHhhhhHHHHHHHHHhcccc---chhhh
Confidence 899999999998877432222111 0000000000 001112456799999999999988754 44444
Q ss_pred hHHHHH
Q 001448 514 PKLVLE 519 (1075)
Q Consensus 514 ~~~V~~ 519 (1075)
++-+..
T Consensus 1649 p~~L~~ 1654 (1710)
T KOG1851|consen 1649 PKPLMN 1654 (1710)
T ss_pred HHHHHH
Confidence 444433
No 195
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=23.86 E-value=2.1e+02 Score=30.27 Aligned_cols=62 Identities=23% Similarity=0.180 Sum_probs=50.8
Q ss_pred cCCCchhHHHHHhhHHhhccCCCcchhHHHHHHHHhhcCCChhHHHHHHHHHHHHHccChhhHh
Q 001448 965 WQCSSPKWSVRFTQQLVLFAPQAVSVHSHVQTLLSTLSSRQPILRHLAVSTLRHLIEKDPDSVI 1028 (1075)
Q Consensus 965 ~~~~~~~eai~clQqL~lFAP~~v~~~~lV~~L~~~L~S~~~~Lr~aav~cLrqL~qR~a~~v~ 1028 (1075)
.+..+...|+.+++...= -+.+|...-||.|..-.+|+.+.+|+.|...++.|-+|++.-+-
T Consensus 20 ~~~~vr~~Al~~l~~il~--qGLvnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~ 81 (187)
T PF12830_consen 20 SDDSVRLAALQVLELILR--QGLVNPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVE 81 (187)
T ss_pred CCHHHHHHHHHHHHHHHh--cCCCChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHH
Confidence 344456677777766543 57788889999999999999999999999999999999987653
No 196
>PF10350 DUF2428: Putative death-receptor fusion protein (DUF2428); InterPro: IPR019442 This domain is found in a family of proteins of unknown function that are conserved from plants to humans. Several of these proteins have been annotated as being HEAT repeat-containing proteins while others are designated as death-receptor interacting proteins, but neither of these has yet been confirmed. Aberrations in the genes encoding these proteins have been observed in benign thyroid adenomas [].
Probab=23.57 E-value=9.3e+02 Score=26.83 Aligned_cols=112 Identities=14% Similarity=0.122 Sum_probs=75.4
Q ss_pred HHHHHhccCChhhHHHHHHHHHHHHHHHhhcC-CCh--hHhHH--HHHHHHHHhccCCc---hhhHHhHHHHHHhhhcCC
Q 001448 45 DLISAIDEEPKESILLWQRKCEDALYSLLILG-ARR--PVRHL--ASVAMGRIISKGDN---ISVYSRVSSLQGFLSDGK 116 (1075)
Q Consensus 45 ~L~~~l~~~~k~di~~~Q~~l~~~L~~ll~~~-~g~--P~R~l--~a~cl~~ly~~GD~---~~lf~~vn~l~~~l~~~k 116 (1075)
.+=+.+...+..++.+.=.+.-+++++.|... ... .|||. +.-++..|..--.. ..+-.++..|..+.+...
T Consensus 123 ~lc~~l~~~~~~~l~~LP~~WL~~~l~~i~~~~~~~~~iTRRSAGLP~~i~aiL~ae~~~~~~ll~~~~~~Ll~ia~~~~ 202 (255)
T PF10350_consen 123 ALCRRLWSSNNPELSELPEEWLDELLEAIESKGQQKLSITRRSAGLPFLILAILSAEPSNSRPLLHRTMKSLLEIAKSPS 202 (255)
T ss_pred HHHHHHhcCCCchHHHhHHHHHHHHHHHHhcccccccccccccCcHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCc
Confidence 33444444455555555555666666666665 343 78998 45566666664332 567778889998887321
Q ss_pred C-------CChhhHHHHHHHHHHHHH--HHhhHhhcCHHHHHHHHHHHhcc
Q 001448 117 K-------SEPQKVAGAAQCLGELYR--QFGRRITSGLLETTIIAAKLMKF 158 (1075)
Q Consensus 117 ~-------~s~~~~~aA~~cLG~l~~--~~G~~l~s~~~e~~~~llK~lK~ 158 (1075)
. |.|.. =|+-||-.+|. ++|..+....++.+...++.+.+
T Consensus 203 ~~~~~~~~d~~qV--HAlNiLr~if~ds~L~~~~~~yi~~~l~lai~~f~s 251 (255)
T PF10350_consen 203 TQHEDEKSDLPQV--HALNILRAIFRDSKLSEDVSPYIEDALILAIKGFSS 251 (255)
T ss_pred ccccccccchHHH--HHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCC
Confidence 1 12333 39999999998 88999999999999999988875
No 197
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=23.46 E-value=6.2e+02 Score=25.77 Aligned_cols=90 Identities=20% Similarity=0.151 Sum_probs=67.2
Q ss_pred HHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHHHhCCCch-hh-HHHHHHHHHHHhc------CCChHHHHHHHHHHH
Q 001448 374 TQRSFLVFLGKQLQAVDASPFMKIAALRTLSYTLKTLGEVPS-EF-KEVLDSTVVAAVS------HSSQLVRIEAALTLR 445 (1075)
Q Consensus 374 ~Q~~~~~~l~~~~~~~~~s~~~lv~aL~el~~Ll~~LGsa~~-~~-~~~l~d~L~~lL~------hps~svRi~AA~cLr 445 (1075)
+-+++++.|.+++.+ +|++..+-||..+-.+++.=|..+- ++ .....+-+++++. .+...||--....++
T Consensus 35 ~~k~a~rai~krl~~--~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~ 112 (139)
T cd03567 35 GPQLAVRLLAHKIQS--PQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLY 112 (139)
T ss_pred cHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHH
Confidence 346777777777754 4568889999999999999999775 33 3566777888885 367899999999999
Q ss_pred HHHHhCCcchhhHHHHHHHHHH
Q 001448 446 ALAEVDPTCVSGLITYGVTTLN 467 (1075)
Q Consensus 446 ~~~~a~Ps~l~~ll~~~~~~L~ 467 (1075)
.-+.++|..+. +......|.
T Consensus 113 ~W~~~f~~~p~--~~~~Y~~Lk 132 (139)
T cd03567 113 SWTLELPHEPK--IKEAYDMLK 132 (139)
T ss_pred HHHHHhcccch--HHHHHHHHH
Confidence 99999986544 444444443
No 198
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=23.44 E-value=1.1e+03 Score=26.54 Aligned_cols=129 Identities=15% Similarity=0.181 Sum_probs=79.9
Q ss_pred hhHHHHHHHHHHHHHHHhhc--CCC-------------------------hhH-----hHHHHHHHHHHhccCCchhhHH
Q 001448 56 ESILLWQRKCEDALYSLLIL--GAR-------------------------RPV-----RHLASVAMGRIISKGDNISVYS 103 (1075)
Q Consensus 56 ~di~~~Q~~l~~~L~~ll~~--~~g-------------------------~P~-----R~l~a~cl~~ly~~GD~~~lf~ 103 (1075)
+.+++.|+.+-..|-+++.. .+. +|. ...--.++..++..||-. +
T Consensus 85 ~~~~~rq~~~y~dld~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~Y~~A~~l~~~~~~y~---~ 161 (263)
T PRK10803 85 NQVVERQKQIYLQIDSLSSGGAAAQSTSGDQSGAAASATPAADAGTANAGAPVQSGDANTDYNAAIALVQDKSRQD---D 161 (263)
T ss_pred HHHHHHHHHHHHHHHHHHhccccCCccccccccCCCccccccCcccccccCCCCCCCHHHHHHHHHHHHHhcCCHH---H
Confidence 45777888887788877752 111 111 444445565667677754 4
Q ss_pred hHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHhhHhhcCHHHHHHHHHHHhccC-cHHHHHHHHHHHHHHHhcCCCCC
Q 001448 104 RVSSLQGFLSDGKKSEPQKVAGAAQCLGELYRQFGRRITSGLLETTIIAAKLMKFN-EEFVRQEALLLLQNALEGSGGSA 182 (1075)
Q Consensus 104 ~vn~l~~~l~~~k~~s~~~~~aA~~cLG~l~~~~G~~l~s~~~e~~~~llK~lK~~-~~~~R~~~l~~L~kil~g~g~~~ 182 (1075)
.+..+..+++.- .+++..- .|.+-||++|...|+. .+....+-+.++.. ....+..++.-+..+....|.
T Consensus 162 Ai~af~~fl~~y-P~s~~a~-~A~y~LG~~y~~~g~~-----~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~-- 232 (263)
T PRK10803 162 AIVAFQNFVKKY-PDSTYQP-NANYWLGQLNYNKGKK-----DDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGD-- 232 (263)
T ss_pred HHHHHHHHHHHC-cCCcchH-HHHHHHHHHHHHcCCH-----HHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCC--
Confidence 555788888622 3333332 5788999999987764 45666677777652 344566777777777776763
Q ss_pred chhHHHHHHHHHHHH
Q 001448 183 AASAYSEAFRLIMRF 197 (1075)
Q Consensus 183 ~~~~~~di~K~~~r~ 197 (1075)
..-++++|+.+.+.
T Consensus 233 -~~~A~~~~~~vi~~ 246 (263)
T PRK10803 233 -TAKAKAVYQQVIKK 246 (263)
T ss_pred -HHHHHHHHHHHHHH
Confidence 33477777755443
No 199
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=23.28 E-value=2.2e+02 Score=29.74 Aligned_cols=67 Identities=16% Similarity=0.205 Sum_probs=47.4
Q ss_pred CCChhHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHhCCcchhhHHHH
Q 001448 390 DASPFMKIAALRTLSYTLKTLGEVPSEFKEVLDSTVVAAVSHSSQLVRIEAALTLRALAEVDPTCVSGLITY 461 (1075)
Q Consensus 390 ~~s~~~lv~aL~el~~Ll~~LGsa~~~~~~~l~d~L~~lL~hps~svRi~AA~cLr~~~~a~Ps~l~~ll~~ 461 (1075)
+.+.|.-=++...+...+.. ..-.+.+.+.+-.++.++.+.||-+.+|+||.+....|...-+.+..
T Consensus 116 s~~~~~rR~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~~~~~v~~~l~~ 182 (197)
T cd06561 116 SENEWVRRAAIVLLLRLIKK-----ETDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKKDPERVIAFLEK 182 (197)
T ss_pred CCcHHHHHHHHHHHHHHHHh-----cccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCHHHHHHHHHH
Confidence 34556665555555555555 22345567777777888999999999999999999988655555543
No 200
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=23.04 E-value=1.3e+02 Score=32.51 Aligned_cols=59 Identities=19% Similarity=0.218 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHhcCCcccchhhHHHHHHHHHhccCCCCchhHHHHHHHHHHHHHhhCCCC
Q 001448 889 MWSLHGLLLTIEAAGFSFVSHVQATLGLAMEILLSEENGWVDLQQGVGRLINAIVAVLGPEL 950 (1075)
Q Consensus 889 ~WaL~aL~li~dsaG~~f~~~v~stL~ll~~lll~~~~~~~~~~~~igr~l~alI~~LGPeL 950 (1075)
--.|+-++..++.-|....++..+.|..+.++.-++. .+.+..+-+|+.+.|..+|||.
T Consensus 18 ~~vl~v~s~lf~~lg~~~~~~l~~~L~~l~~lr~~~~---f~~~~~~e~~lgaAi~amGpe~ 76 (198)
T PF08161_consen 18 PEVLNVLSALFEKLGERSSPLLKPILKTLGDLRESED---FSFRKELEQVLGAAIRAMGPEQ 76 (198)
T ss_pred HHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHcCCC---cchHHHHHHHHHHHHHHCCHHH
Confidence 3467778888888888888999999999999887776 4556778888888899999984
No 201
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.64 E-value=7.9e+02 Score=32.01 Aligned_cols=192 Identities=19% Similarity=0.241 Sum_probs=0.0
Q ss_pred HhccccccCCchhhHHHHHHHHHHHHh----hCCcccccccchh----------HHHHHHHHHHHHHhc---CCcccchh
Q 001448 849 LLGDLTVVTDANYAGSIALAIGCIHRS----AGGMALSSLVPAT----------MWSLHGLLLTIEAAG---FSFVSHVQ 911 (1075)
Q Consensus 849 lv~~iv~~~dp~~Rag~aLALG~I~r~----vGgmas~~Ll~~~----------~WaL~aL~li~dsaG---~~f~~~v~ 911 (1075)
+++|+-..+=+.-|=..+++|-+.-|. ||.+|--++++.. .++|.-+..++-..- .+-.+-..
T Consensus 27 LcDRvessTL~eDRR~A~rgLKa~srkYR~~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v~dds~qs 106 (970)
T KOG0946|consen 27 LCDRVESSTLLEDRRDAVRGLKAFSRKYREEVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEVMDDSTQS 106 (970)
T ss_pred HHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhhcccchhh
Q ss_pred hHHHHHHHHHhccCCCC------------chhHHHHHHHHHHHHHhhCCCCCCCcchhhhhhccccCCCchhHHHHHhhH
Q 001448 912 ATLGLAMEILLSEENGW------------VDLQQGVGRLINAIVAVLGPELAPGSIFFSRCKVSAWQCSSPKWSVRFTQQ 979 (1075)
Q Consensus 912 stL~ll~~lll~~~~~~------------~~~~~~igr~l~alI~~LGPeLq~~s~~~~~~~~~~~~~~~~~eai~clQq 979 (1075)
.-+|+-+.--+--..++ .-++..--+++.+++...|||+ |+
T Consensus 107 dd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~---------------------------q~ 159 (970)
T KOG0946|consen 107 DDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTEL---------------------------QD 159 (970)
T ss_pred hHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHH---------------------------HH
Q ss_pred HhhccCCCcchhHHHHHHHHhhcCCChhHHHHHHHHHHHHHccChhh---HhhhchHHHHHHhhccCCCHHH-------H
Q 001448 980 LVLFAPQAVSVHSHVQTLLSTLSSRQPILRHLAVSTLRHLIEKDPDS---VIEERIEGNLFHMLDEETDSEY-------V 1049 (1075)
Q Consensus 980 L~lFAP~~v~~~~lV~~L~~~L~S~~~~Lr~aav~cLrqL~qR~a~~---v~~~~le~~Lf~~LD~e~d~~l-------~ 1049 (1075)
.+|--|..| .+|..-|..++-+.|..|+--|-.|++-.+.- |.=+..-+.||..+..|++.++ .
T Consensus 160 ~ll~~P~gI------S~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL 233 (970)
T KOG0946|consen 160 ALLVSPMGI------SKLMDLLRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCL 233 (970)
T ss_pred HHHHCchhH------HHHHHHHhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHH
Q ss_pred HHHHHHhhhhhcchhhhhcccccC
Q 001448 1050 KSYTLCLAYFSSFYAFYLENEYLP 1073 (1075)
Q Consensus 1050 ~~~~~~~~~~~~~~~~~~~~~~~~ 1073 (1075)
.++--+.-+-.|+--|+.|..|+|
T Consensus 234 ~ll~NLLK~N~SNQ~~FrE~~~i~ 257 (970)
T KOG0946|consen 234 ILLNNLLKNNISNQNFFREGSYIP 257 (970)
T ss_pred HHHHHHHhhCcchhhHHhccccHH
No 202
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=22.63 E-value=1.3e+02 Score=37.34 Aligned_cols=60 Identities=17% Similarity=0.098 Sum_probs=45.7
Q ss_pred hCCCchhhHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHhCCcchhhHHHHHHHHHHhh
Q 001448 410 LGEVPSEFKEVLDSTVVAAVSHSSQLVRIEAALTLRALAEVDPTCVSGLITYGVTTLNAL 469 (1075)
Q Consensus 410 LGsa~~~~~~~l~d~L~~lL~hps~svRi~AA~cLr~~~~a~Ps~l~~ll~~~~~~L~~~ 469 (1075)
-=.-++++++...|+++.++-.+...||++|-.-|-.+|...|..++.+.+-+...|..+
T Consensus 49 ffk~FP~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kvaDvL~QlL~td 108 (556)
T PF05918_consen 49 FFKHFPDLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKVADVLVQLLQTD 108 (556)
T ss_dssp HHCC-GGGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHHHHHHHHHTT--
T ss_pred HHhhChhhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHHHHHHHHHHhcc
Confidence 345677889999999999999999999999999999999999999999988877777654
No 203
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=22.48 E-value=2.1e+02 Score=33.42 Aligned_cols=77 Identities=19% Similarity=0.157 Sum_probs=45.5
Q ss_pred HHHHHHHHHHhhhc---cCChHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHHHhCCCchhhHH-----HHHHHHH
Q 001448 355 LACVLYILRIGVTD---QMTEPTQRSFLVFLGKQLQAVDASPFMKIAALRTLSYTLKTLGEVPSEFKE-----VLDSTVV 426 (1075)
Q Consensus 355 r~~v~~ILr~~v~~---~L~E~~Q~~~~~~l~~~~~~~~~s~~~lv~aL~el~~Ll~~LGsa~~~~~~-----~l~d~L~ 426 (1075)
.|-.+|.|....+. .-+++.=.+.+-.+.|-+.+.|+ -+++-|+=+++.|.. .+.+-.+ ++..-|+
T Consensus 218 lRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~--evlvDA~WAiSYlsD----g~~E~i~avld~g~~~RLv 291 (526)
T COG5064 218 LRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDP--EVLVDACWAISYLSD----GPNEKIQAVLDVGIPGRLV 291 (526)
T ss_pred HHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCH--HHHHHHHHHHHHhcc----CcHHHHHHHHhcCCcHHHH
Confidence 45566776666632 22444445666666665555555 567777777777643 3333222 2445688
Q ss_pred HHhcCCChHHH
Q 001448 427 AAVSHSSQLVR 437 (1075)
Q Consensus 427 ~lL~hps~svR 437 (1075)
.+|+||+.-|+
T Consensus 292 ElLs~~sa~iq 302 (526)
T COG5064 292 ELLSHESAKIQ 302 (526)
T ss_pred HHhcCcccccc
Confidence 89999887774
No 204
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=22.45 E-value=4.5e+02 Score=27.05 Aligned_cols=68 Identities=10% Similarity=0.048 Sum_probs=56.3
Q ss_pred hhhHHHHHHHHHHHHHHHhhHhhcCHHHHHHHHHH-Hhcc--CcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHH
Q 001448 120 PQKVAGAAQCLGELYRQFGRRITSGLLETTIIAAK-LMKF--NEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRL 193 (1075)
Q Consensus 120 ~~~~~aA~~cLG~l~~~~G~~l~s~~~e~~~~llK-~lK~--~~~~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~ 193 (1075)
+.....++.++..++..++..+....+...+.++. .+.+ +...-|..+|..+.++++ ++....|+|..
T Consensus 87 ~~i~~~slri~~~l~~~~~~~Lk~ele~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~------~p~~l~~lf~N 157 (168)
T PF12783_consen 87 FPIFSRSLRIFLTLLSRFRSHLKLELEVFLSHIILRILESDNSSLWQKELALEILRELCK------DPQFLVDLFVN 157 (168)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHh------ChhHHHHHHHH
Confidence 55556799999999999999999999999998888 6664 345688889999999886 45789999983
No 205
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=21.77 E-value=8.8e+02 Score=29.06 Aligned_cols=148 Identities=14% Similarity=0.086 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHhcccccCC--CcchhHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhhhccCChHHH--HHHHHHHHhhc
Q 001448 311 LTLSWVYFLQAIRLKYFHP--DSELQDYALQVMDMLRADIFVDSHALACVLYILRIGVTDQMTEPTQ--RSFLVFLGKQL 386 (1075)
Q Consensus 311 v~~ayv~fl~~lg~~wle~--~~~~~~~~~~i~~ll~~~~~~~~~~r~~v~~ILr~~v~~~L~E~~Q--~~~~~~l~~~~ 386 (1075)
+..+|-.|++.+-..-... +.--..|+..+++++. +-|+.-|.++.-+|+...++.++-..- +.+...+.+-+
T Consensus 107 L~~vY~il~~~i~~~~~~~~~~~i~~~fi~~Ll~l~~---S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~~~~fi 183 (409)
T PF01603_consen 107 LQLVYEILLRFIESPPFDPAKKYIDQKFIKKLLELFD---SPDPRERDYLKTILHRIYGKFPNLRSFIRKSINNIFYRFI 183 (409)
T ss_dssp HHHHHHHHHHHHTSTT--CCTTTS-HHHHHHHHHTTT---SSTHHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCccccHHHHHcCHHHHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHh
Confidence 4567777777754322211 0011366666666664 357888999999999999988887766 33333333322
Q ss_pred ccCCCChhHHHHHHHHHHHHHHHhCCC-chhhHHHHHHHHHHHhcCCChHH-HHHHHHHHHHHHHhCCcchhhHHHHH
Q 001448 387 QAVDASPFMKIAALRTLSYTLKTLGEV-PSEFKEVLDSTVVAAVSHSSQLV-RIEAALTLRALAEVDPTCVSGLITYG 462 (1075)
Q Consensus 387 ~~~~~s~~~lv~aL~el~~Ll~~LGsa-~~~~~~~l~d~L~~lL~hps~sv-Ri~AA~cLr~~~~a~Ps~l~~ll~~~ 462 (1075)
. ....++..--.|+-+++.+.+...- ..+...-+...++.+..+|+... .-.=+.|+..|+.-.|+....++...
T Consensus 184 ~-e~~~~~gI~elLeil~sii~gf~~plk~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l~~~~i~~l 260 (409)
T PF01603_consen 184 Y-ETERHNGIAELLEILGSIINGFAVPLKEEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSLAEPVIKGL 260 (409)
T ss_dssp H-TTS--STHHHHHHHHHHHHTT--SS--HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGGHHHHHHHH
T ss_pred c-CcccccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 2 1223345666788888888765432 23455567778888888887665 55667788888888887777766544
No 206
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=21.26 E-value=4.2e+02 Score=30.68 Aligned_cols=103 Identities=17% Similarity=0.151 Sum_probs=63.3
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHh--------------ccC-cc-----hHH
Q 001448 147 ETTIIAAKLMKFNEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFA--------------IVD-KS-----FVV 206 (1075)
Q Consensus 147 e~~~~llK~lK~~~~~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~--------------~~D-ks-----~~V 206 (1075)
+-...+-|.+.+........+|+.|..|+.=.|+ ..++|+++. +... ..+ +. ..|
T Consensus 56 ~~~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g----~~a~~v~~~-fd~~~~~l~kll~~~~~~~~~~~~~~~~~~si 130 (330)
T PF11707_consen 56 NHLKLLYRSLSSSKPSLTNPALRLLTAIVSFDGG----ALAREVLRS-FDFSLKSLPKLLTPRKKEKEKDSESSKSKPSI 130 (330)
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHHHccCCH----HHHHHHHHh-cCCchhhHHHHhccccccccccccccccCcCH
Confidence 3355666666666666666999999999884442 345666551 1111 111 11 299
Q ss_pred HHHHHHHHHHHHhhcCCCcccchhh--hHhhHHhhhccCCChhHHHHHHH
Q 001448 207 RIAGARCLKAFAHIGGPCLGVGELD--NSATHCVKAIEDPIASVRDAFAE 254 (1075)
Q Consensus 207 r~aAa~cL~~l~~~~~~~~~~~dlE--~l~sl~~K~le~s~~~vR~a~A~ 254 (1075)
|.+..+-+.++...+++.....=++ .+.+..||.+....+++=..+=+
T Consensus 131 R~~fI~F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~ 180 (330)
T PF11707_consen 131 RTNFIRFWLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILE 180 (330)
T ss_pred HHHHHHHHHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHH
Confidence 9999999999999765544222111 24888999998866654433333
No 207
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=21.12 E-value=7.1e+02 Score=25.56 Aligned_cols=97 Identities=11% Similarity=0.020 Sum_probs=60.6
Q ss_pred hhHHHHHHHHHHHHHHHhhHhhcCH----------HHHHHHHHHHhccCcHHHHHHHHHHHHHHHhcCCCCCc---hhHH
Q 001448 121 QKVAGAAQCLGELYRQFGRRITSGL----------LETTIIAAKLMKFNEEFVRQEALLLLQNALEGSGGSAA---ASAY 187 (1075)
Q Consensus 121 ~~~~aA~~cLG~l~~~~G~~l~s~~----------~e~~~~llK~lK~~~~~~R~~~l~~L~kil~g~g~~~~---~~~~ 187 (1075)
..+.-++..+-.+++..|..+.+.- ...+..++|++.+.+..+=..+++.+.-++...+...- +...
T Consensus 37 ~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~~~Lk~ele~~l 116 (168)
T PF12783_consen 37 RSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFRSHLKLELEVFL 116 (168)
T ss_pred HHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788888888888888776433 45667777777665554444566666666655553321 2333
Q ss_pred HHHHHHHHHHhccCc-chHHHHHHHHHHHHHHhh
Q 001448 188 SEAFRLIMRFAIVDK-SFVVRIAGARCLKAFAHI 220 (1075)
Q Consensus 188 ~di~K~~~r~~~~Dk-s~~Vr~aAa~cL~~l~~~ 220 (1075)
..+++.+. -+|. +..-|..+.+++..+.+.
T Consensus 117 ~~i~~~il---~~~~~~~~~k~~~Le~l~~l~~~ 147 (168)
T PF12783_consen 117 SHIILRIL---ESDNSSLWQKELALEILRELCKD 147 (168)
T ss_pred HHHHHHHH---ccCCCcHHHHHHHHHHHHHHHhC
Confidence 44444222 2233 467888899999998875
No 208
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=20.84 E-value=2.1e+03 Score=28.97 Aligned_cols=167 Identities=19% Similarity=0.102 Sum_probs=92.5
Q ss_pred HHHhhcCCChhH--hHHHHHHHHHHhccCCchhhHHhHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHhhHhhcCHHH
Q 001448 70 YSLLILGARRPV--RHLASVAMGRIISKGDNISVYSRVSSLQGFLSDGKKSEPQKVAGAAQCLGELYRQFGRRITSGLLE 147 (1075)
Q Consensus 70 ~~ll~~~~g~P~--R~l~a~cl~~ly~~GD~~~lf~~vn~l~~~l~~~k~~s~~~~~aA~~cLG~l~~~~G~~l~s~~~e 147 (1075)
-+|+...||.-. ++|. |++. |...+|++...++++++.. ++.|. |.+-+|.+|-+--. -....+
T Consensus 520 k~Ilkehp~YId~ylRl~--~ma~-----~k~~~~ea~~~lk~~l~~d-~~np~----arsl~G~~~l~k~~--~~~a~k 585 (1018)
T KOG2002|consen 520 KSILKEHPGYIDAYLRLG--CMAR-----DKNNLYEASLLLKDALNID-SSNPN----ARSLLGNLHLKKSE--WKPAKK 585 (1018)
T ss_pred HHHHHHCchhHHHHHHhh--HHHH-----hccCcHHHHHHHHHHHhcc-cCCcH----HHHHHHHHHHhhhh--hccccc
Confidence 455667788887 3333 7665 7788899999999999732 33454 34556655532211 111111
Q ss_pred HHH--------------------HHHHHhc----cC--cHHHHHHHHHHHHHHHhcC--------CCCC------chhHH
Q 001448 148 TTI--------------------IAAKLMK----FN--EEFVRQEALLLLQNALEGS--------GGSA------AASAY 187 (1075)
Q Consensus 148 ~~~--------------------~llK~lK----~~--~~~~R~~~l~~L~kil~g~--------g~~~------~~~~~ 187 (1075)
... ..+..+. +. +...-.-|++...|||+.- |-++ .-..+
T Consensus 586 ~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A 665 (1018)
T KOG2002|consen 586 KFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEA 665 (1018)
T ss_pred HHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHH
Confidence 111 1111111 11 2223334677777777643 1111 13458
Q ss_pred HHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhcCCCcccchhhhHhhHHhhhccCCChhHHHHHHHHHHH
Q 001448 188 SEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGGPCLGVGELDNSATHCVKAIEDPIASVRDAFAEALGS 258 (1075)
Q Consensus 188 ~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~~~~~~~~dlE~l~sl~~K~le~s~~~vR~a~A~~La~ 258 (1075)
+|||++ +|.+. ++...|..--+.|+.+.-+.. .-++...+..-|+.+..+++|=+..|+++-+
T Consensus 666 ~dIFsq-VrEa~-~~~~dv~lNlah~~~e~~qy~------~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~ 728 (1018)
T KOG2002|consen 666 RDIFSQ-VREAT-SDFEDVWLNLAHCYVEQGQYR------LAIQMYENCLKKFYKKNRSEVLHYLARAWYE 728 (1018)
T ss_pred HHHHHH-HHHHH-hhCCceeeeHHHHHHHHHHHH------HHHHHHHHHHHHhcccCCHHHHHHHHHHHHH
Confidence 999997 55544 355667766777876665532 3445555566666666677776666655443
No 209
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=20.51 E-value=2.2e+02 Score=26.71 Aligned_cols=53 Identities=17% Similarity=-0.004 Sum_probs=45.6
Q ss_pred hHHHHHHHHHHHHHHHhhHhhcCHHHHHHHHHHHhcc--CcHHHHHHHHHHHHHH
Q 001448 122 KVAGAAQCLGELYRQFGRRITSGLLETTIIAAKLMKF--NEEFVRQEALLLLQNA 174 (1075)
Q Consensus 122 ~~~aA~~cLG~l~~~~G~~l~s~~~e~~~~llK~lK~--~~~~~R~~~l~~L~ki 174 (1075)
-|--|..+|+.+..+||..--++.+-++..+.|.+.. ..-+.+|-++..|.++
T Consensus 22 LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~l 76 (92)
T PF07571_consen 22 LRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSAL 76 (92)
T ss_pred HHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 4445899999999999999999999999999999984 4667899999998884
No 210
>PF05997 Nop52: Nucleolar protein,Nop52; InterPro: IPR010301 Nop52 is believed to be involved in the generation of 28S rRNA [].; GO: 0006364 rRNA processing, 0030688 preribosome, small subunit precursor
Probab=20.47 E-value=4e+02 Score=29.15 Aligned_cols=67 Identities=21% Similarity=0.187 Sum_probs=52.0
Q ss_pred HHHHhccCcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHh--ccCcchHHHHHHHHHHHHHHhh
Q 001448 152 AAKLMKFNEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFA--IVDKSFVVRIAGARCLKAFAHI 220 (1075)
Q Consensus 152 llK~lK~~~~~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~--~~Dks~~Vr~aAa~cL~~l~~~ 220 (1075)
+.|.|-+++..+|-.+++.|++-+..-....++.-..++|| ..=.| ++||- .||..-|+.+..|+..
T Consensus 5 ~~k~LAs~d~~~R~~al~~l~~~l~~~~~~~~~~~~~kLWK-GLfy~mWmsDkp-l~Q~~la~~la~l~~~ 73 (217)
T PF05997_consen 5 FAKKLASNDKKTRDRALKSLRKWLSKRSQLLTELDMLKLWK-GLFYCMWMSDKP-LVQEELAEELASLIHS 73 (217)
T ss_pred HHHHhhcCChhHHHHHHHHHHHHHHhccccCCHHHHHHHHH-HHHHHHHhcCCc-hhHHHHHHHHHHHHHh
Confidence 56777889999999999999999997775535677999999 34444 57886 6676667777777764
No 211
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=20.43 E-value=4.1e+02 Score=33.15 Aligned_cols=67 Identities=24% Similarity=0.238 Sum_probs=50.1
Q ss_pred hcCHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhccCc--chHHHHHH
Q 001448 142 TSGLLETTIIAAKLMKFNEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVDK--SFVVRIAG 210 (1075)
Q Consensus 142 ~s~~~e~~~~llK~lK~~~~~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~Dk--s~~Vr~aA 210 (1075)
++.......++-.+++...+.+|..+|-+++-|+-....-..+ -+++|.|. +..-.+|| +-.+...|
T Consensus 616 g~G~~~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp-~v~~I~k~-f~~vI~~Khe~glaklGA 684 (926)
T COG5116 616 GTGDKVATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNP-NVKRIIKK-FNRVIVDKHESGLAKLGA 684 (926)
T ss_pred CCccHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccCh-hHHHHHHH-HHHHHhhhhHhHHHHHHH
Confidence 3444445666677888889999999999999999998877764 48999996 66667774 34455554
No 212
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.16 E-value=1e+03 Score=31.03 Aligned_cols=150 Identities=17% Similarity=0.177 Sum_probs=89.3
Q ss_pred HHHHhccCCchhhHHhHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHhhHhhcCHHHHHHHHHHHhccCcHHHHHHHH
Q 001448 89 MGRIISKGDNISVYSRVSSLQGFLSDGKKSEPQKVAGAAQCLGELYRQFGRRITSGLLETTIIAAKLMKFNEEFVRQEAL 168 (1075)
Q Consensus 89 l~~ly~~GD~~~lf~~vn~l~~~l~~~k~~s~~~~~aA~~cLG~l~~~~G~~l~s~~~e~~~~llK~lK~~~~~~R~~~l 168 (1075)
|..|-+.++-..++- +++..+++ .+.+.-++|+..+|..-. .+++--+...+-++-++++.++.+=.++.
T Consensus 381 Ls~La~esni~~ILr---E~q~YI~s---~d~~faa~aV~AiGrCA~----~~~sv~~tCL~gLv~Llsshde~Vv~eaV 450 (968)
T KOG1060|consen 381 LSNLANESNISEILR---ELQTYIKS---SDRSFAAAAVKAIGRCAS----RIGSVTDTCLNGLVQLLSSHDELVVAEAV 450 (968)
T ss_pred HHHHhhhccHHHHHH---HHHHHHhc---CchhHHHHHHHHHHHHHH----hhCchhhHHHHHHHHHHhcccchhHHHHH
Confidence 334444444444444 77777762 122344677777775544 44444454556677788888889999999
Q ss_pred HHHHHHHhcCCCCCchhHHHHHHHHHHHHhccC--cchHHHHHHHHHHHHHHhhcCCCcccchhhhHhhHHhhhccCCCh
Q 001448 169 LLLQNALEGSGGSAAASAYSEAFRLIMRFAIVD--KSFVVRIAGARCLKAFAHIGGPCLGVGELDNSATHCVKAIEDPIA 246 (1075)
Q Consensus 169 ~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~D--ks~~Vr~aAa~cL~~l~~~~~~~~~~~dlE~l~sl~~K~le~s~~ 246 (1075)
..+++.+. .++.-|-+|.++.+|.. | ....-|..-..-..+....- |- -.. .+.....|.|-+.++
T Consensus 451 ~vIk~Llq-----~~p~~h~~ii~~La~ll--dti~vp~ARA~IiWLige~~e~v-pr-i~P---DVLR~laksFs~E~~ 518 (968)
T KOG1060|consen 451 VVIKRLLQ-----KDPAEHLEILFQLARLL--DTILVPAARAGIIWLIGEYCEIV-PR-IAP---DVLRKLAKSFSDEGD 518 (968)
T ss_pred HHHHHHHh-----hChHHHHHHHHHHHHHh--hhhhhhhhhceeeeeehhhhhhc-ch-hch---HHHHHHHHhhccccc
Confidence 99999888 44567888888878864 3 22222211111111111110 00 111 366677888888899
Q ss_pred hHHHHHHHHHHHHH
Q 001448 247 SVRDAFAEALGSLL 260 (1075)
Q Consensus 247 ~vR~a~A~~La~lL 260 (1075)
+||..+=.+-+.++
T Consensus 519 evKlQILnL~aKLy 532 (968)
T KOG1060|consen 519 EVKLQILNLSAKLY 532 (968)
T ss_pred hhhHHHHHhhhhhe
Confidence 99988777766655
Done!