Query 001448
Match_columns 1075
No_of_seqs 166 out of 213
Neff 6.4
Searched_HMMs 29240
Date Tue Mar 26 15:46:44 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001448.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_751-754//hhsearch_pdb/001448hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fdd_A Transportin-1; heat rep 1.0 1 1 125.6 45.3 190 63-259 89-283 (852)
2 1u6g_C TIP120 protein, CAND1; 1.0 1 1 104.2 72.0 221 31-261 15-243 (1230)
3 4fdd_A Transportin-1; heat rep 1.0 1 1 103.7 44.0 372 34-465 7-404 (852)
4 1b3u_A Protein (protein phosph 1.0 1 1 98.1 38.0 134 117-260 98-231 (588)
5 1u6g_C TIP120 protein, CAND1; 1.0 1 1 97.8 68.8 919 62-1060 84-1184(1230)
6 2bpt_A Importin beta-1 subunit 1.0 1 1 90.4 40.4 462 65-607 40-530 (861)
7 1b3u_A Protein (protein phosph 1.0 1 1 90.3 32.1 171 76-260 21-192 (588)
8 1ibr_B P95, importin beta-1 su 1.0 1 1 88.0 28.4 375 63-465 34-455 (462)
9 1qgr_A Protein (importin beta 1.0 1 1 86.8 57.9 234 63-321 34-289 (876)
10 2bpt_A Importin beta-1 subunit 1.0 1 1 85.0 45.8 196 62-262 93-296 (861)
No 1
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=1.00 E-value=1 Score=125.59 Aligned_cols=190 Identities=13% Similarity=0.062 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999985119990276899999999730277403688699989754169998835697899999999999865763
Q 001448 63 RKCEDALYSLLILGARRPVRHLASVAMGRIISKGDNISVYSRVSSLQGFLSDGKKSEPQKVAGAAQCLGELYRQFGRRIT 142 (1075)
Q Consensus 63 ~~l~~~L~~ll~~~~g~P~R~l~a~cla~ly~~GD~~~Lf~~vn~l~~~l~~~k~~s~~~~~aA~~cLG~l~~~~G~~~~ 142 (1075)
..+++.+.+.+. .+.+.+|+.++.|++.+.+......--+.+..+...++ +.++..+.+|+.||+.+++..+..+.
T Consensus 89 ~~ik~~ll~~l~-~~~~~vr~~~a~~i~~ia~~~~~~~wp~ll~~L~~~l~---~~~~~~r~~al~~L~~i~~~~~~~~~ 164 (852)
T 4fdd_A 89 DFIKSECLNNIG-DSSPLIRATVGILITTIASKGELQNWPDLLPKLCSLLD---SEDYNTCEGAFGALQKICEDSAEILD 164 (852)
T ss_dssp HHHHHHHHTTTT-CSSHHHHHHHHHHHHHHHHHTTTTTCTTHHHHHHHHHS---CSSHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 999999999874-99899999999999999986481356899999999870---99989999999999999998578756
Q ss_pred CC-----HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Q ss_conf 07-----7999999999731072889999999999999318999815479999999988741586358999999999999
Q 001448 143 SG-----LLETTIIAAKLMKFNEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAF 217 (1075)
Q Consensus 143 s~-----~~e~~~~llK~lK~~~a~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l 217 (1075)
+. ....+..+++.++..+..+|..++.++..++.+.+... .....++.+...+ ..+|.+..||..+++|+..+
T Consensus 165 ~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~-~~~~~~~l~~l~~-~~~d~~~~vr~~a~~~L~~l 242 (852)
T 4fdd_A 165 SDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQAL-MLHIDSFIENLFA-LAGDEEPEVRKNVCRALVML 242 (852)
T ss_dssp HCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHH-HTSHHHHHHHHHH-HHTCCCHHHHHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHH-HHHHHHHHHHHHH-HCCCCCHHHHHHHHHHHHHH
T ss_conf 343133299999999998567978999999999999986463879-9889999999998-71799778999999999999
Q ss_pred HHHCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Q ss_conf 863199865542566765776533578743899999999999
Q 001448 218 AHIGGPCLGVGELDNSATHCVKAIEDPIASVRDAFAEALGSL 259 (1075)
Q Consensus 218 ~~~~~~~~~~~dle~l~sl~~K~le~s~~~vR~a~A~~La~l 259 (1075)
.... +..-..-++.+...+++.+.+.+..||..+.+.+..+
T Consensus 243 ~~~~-~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l 283 (852)
T 4fdd_A 243 LEVR-MDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTL 283 (852)
T ss_dssp HHHC-HHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred HHHC-HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf 9857-7989988999999999870699689999999999998
No 2
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=1.00 E-value=1 Score=104.24 Aligned_cols=221 Identities=15% Similarity=0.135 Sum_probs=146.6
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 37999116979999999872029946589998999999999851199902768999999997302774036886999897
Q 001448 31 QQSPDPLLCFDLLSDLISAIDEEPKESILLWQRKCEDALYSLLILGARRPVRHLASVAMGRIISKGDNISVYSRVSSLQG 110 (1075)
Q Consensus 31 ~~~~~~~~~~~~L~~L~~~l~~~~k~di~~~Q~~l~~~L~~ll~~~~g~P~R~l~a~cla~ly~~GD~~~Lf~~vn~l~~ 110 (1075)
-++||+-.-+.-+.+|.+.+..-....-....+++...|.+.+. .+-+.+|+..++|++.+...-....+-..+..+..
T Consensus 15 l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~-d~~~~vR~~A~~~L~~l~~~~~~~~~~~i~~~Ll~ 93 (1230)
T 1u6g_C 15 MTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLE-DKNGEVQNLAVKCLGPLVSKVKEYQVETIVDTLCT 93 (1230)
T ss_dssp TTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTT-CSSHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf 58987859999999999997416657875679999999999866-99989999999999999975879899999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHHHHHHHHH------HHCCHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 541699988356978999999999998657------63077999999999731-07288999999999999931899981
Q 001448 111 FLSDGKKSEPQKVAGAAQCLGELYRQFGRR------ITSGLLETTIIAAKLMK-FNEEFVRQEALLLLQNALEGSGGSAA 183 (1075)
Q Consensus 111 ~l~~~k~~s~~~~~aA~~cLG~l~~~~G~~------~~s~~~e~~~~llK~lK-~~~a~~R~~~l~~L~kil~g~g~~~~ 183 (1075)
.+. ++++..|.+|+.+|+.+.+.+|.. .....++.+..+++.++ +.+...|..++.++..+++..|....
T Consensus 94 ~l~---d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~ 170 (1230)
T 1u6g_C 94 NML---SDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLV 170 (1230)
T ss_dssp HTT---CSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCT
T ss_pred HHC---CCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 866---98388999999999999996797444441178899999999999875788467999999999999998276778
Q ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHHH
Q ss_conf 5479999999988741586358999999999999863199865542566765776533578-74389999999999998
Q 001448 184 ASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGGPCLGVGELDNSATHCVKAIEDP-IASVRDAFAEALGSLLA 261 (1075)
Q Consensus 184 ~~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~~~~~~~~dle~l~sl~~K~le~s-~~~vR~a~A~~La~lLa 261 (1075)
....++... +-..+.|....||..|++|+..+....+.-+ ++.+....++.+.+. +..+|..+.++++.+..
T Consensus 171 -~~~~~ll~~-l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~----~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~ 243 (1230)
T 1u6g_C 171 -NFHPSILTC-LLPQLTSPRLAVRKRTIIALGHLVMSCGNIV----FVDLIEHLLSELSKNDSMSTTRTYIQCIAAISR 243 (1230)
T ss_dssp -TTHHHHHHH-HGGGGGCSSHHHHHHHHHHHHHHTTTC--------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHH
T ss_pred -HHHHHHHHH-HHHHHCCCCHHHHHHHHHHHHHHHHHCCHHH----HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
T ss_conf -879999999-9998759968999999999999998568999----999999999986167755689999999999999
No 3
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=1.00 E-value=1 Score=103.67 Aligned_cols=372 Identities=13% Similarity=0.065 Sum_probs=191.2
Q ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH---------HHHHHHHHH--CCCCHHHHHHHHHHHHHHHCCCCCH---
Q ss_conf 99116979999999872029946589998999---------999999851--1999027689999999973027740---
Q 001448 34 PDPLLCFDLLSDLISAIDEEPKESILLWQRKC---------EDALYSLLI--LGARRPVRHLASVAMGRIISKGDNI--- 99 (1075)
Q Consensus 34 ~~~~~~~~~L~~L~~~l~~~~k~di~~~Q~~l---------~~~L~~ll~--~~~g~P~R~l~a~cla~ly~~GD~~--- 99 (1075)
|++.-+=+..+-|+..+ ..+.+..++.+..+ ...|..++. .+..+.+|...+-.|.....+.=..
T Consensus 7 ~~~~~~~~l~~~l~~~~-s~d~~~r~~Ae~~L~~~~~~p~~~~~l~~il~~~~~~~~~vR~~a~~~Lkn~i~~~w~~~~~ 85 (852)
T 4fdd_A 7 PDEQGLQQILQLLKESQ-SPDTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQNFPN 85 (852)
T ss_dssp CCHHHHHHHHHHHHHHT-CSCHHHHHHHHHHHHHHTTSHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTTTSGGGCCH
T ss_pred CCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCH
T ss_conf 98423999999999873-94989999999999998709988999999985668898679999999999989874477999
Q ss_pred -HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC
Q ss_conf -3688699989754169998835697899999999999865763077999999999731072889999999999999318
Q 001448 100 -SVYSRVSSLQGFLSDGKKSEPQKVAGAAQCLGELYRQFGRRITSGLLETTIIAAKLMKFNEEFVRQEALLLLQNALEGS 178 (1075)
Q Consensus 100 -~Lf~~vn~l~~~l~~~k~~s~~~~~aA~~cLG~l~~~~G~~~~s~~~e~~~~llK~lK~~~a~~R~~~l~~L~kil~g~ 178 (1075)
..-..-+.+...+. +.++..|..++.|++.+.+.-+. ...++....+.+.+.+.+...|..++.+|.++++..
T Consensus 86 ~~~~~ik~~ll~~l~---~~~~~vr~~~a~~i~~ia~~~~~---~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~ 159 (852)
T 4fdd_A 86 GVTDFIKSECLNNIG---DSSPLIRATVGILITTIASKGEL---QNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDS 159 (852)
T ss_dssp HHHHHHHHHHHTTTT---CSSHHHHHHHHHHHHHHHHHTTT---TTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999874---99899999999999999986481---356899999999870999899999999999999985
Q ss_pred CCCCCH----HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 999815----4799999999887415863589999999999998631998655425667657765335787438999999
Q 001448 179 GGSAAA----SAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGGPCLGVGELDNSATHCVKAIEDPIASVRDAFAE 254 (1075)
Q Consensus 179 g~~~~~----~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~~~~~~~~dle~l~sl~~K~le~s~~~vR~a~A~ 254 (1075)
+...+. .....+... +-.++.|.+..||.+|++|+..+.... +-....-++.+....++.+.+++..+|..+.+
T Consensus 160 ~~~~~~~~~~~~~~~il~~-l~~~l~~~~~~vR~~A~~aL~~~~~~~-~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~ 237 (852)
T 4fdd_A 160 AEILDSDVLDRPLNIMIPK-FLQFFKHSSPKIRSHAVACVNQFIISR-TQALMLHIDSFIENLFALAGDEEPEVRKNVCR 237 (852)
T ss_dssp TTHHHHCSSSSCHHHHHHH-HTTTTTCSSHHHHHHHHHHHHTTTTTT-CHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHH
T ss_pred HHHHCHHHHCCHHHHHHHH-HHHHHCCCCHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
T ss_conf 7875634313329999999-999856797899999999999998646-38799889999999998717997789999999
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHH-CCCCCCCCCCH
Q ss_conf 99999982148877678899999999888067999883221004578886014789999999999980-10146898416
Q 001448 255 ALGSLLALGMNPQAQVQPKGKGPFPPAKKLEGGLQRHLALPFTRANGAKSKNMRVNLTLSWVYFLQAI-RLKYFHPDSEL 333 (1075)
Q Consensus 255 ~La~lLa~~~~~~~~~~~~~k~~~~~~k~l~~~l~~~Ls~~F~k~~~~~~r~~R~Gi~~ayv~fl~~l-g~~~le~~~~~ 333 (1075)
+|+.+.-.....- ...+++.+. .+... .+. ...++|....++|..+...- -..++++ .+
T Consensus 238 ~L~~l~~~~~~~~-------------~~~l~~l~~-~l~~~-~~~---~~~~vr~~a~e~l~~l~~~~~~~~~~~~--~~ 297 (852)
T 4fdd_A 238 ALVMLLEVRMDRL-------------LPHMHNIVE-YMLQR-TQD---QDENVALEACEFWLTLAEQPICKDVLVR--HL 297 (852)
T ss_dssp HHHHHHHHCHHHH-------------GGGHHHHHH-HHHHH-HTC---SSHHHHHHHHHHHHHHTTSTTHHHHHTT--TH
T ss_pred HHHHHHHHCHHHH-------------HHHHHHHHH-HHHHH-CCC---CCHHHHHHHHHHHHHHHCCHHHHHHHHH--HH
T ss_conf 9999998577989-------------988999999-99987-069---9689999999999998603657988788--89
Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC---CCC---CCHHHHHHHHHHHHHHH
Q ss_conf 689999999760298888779999999999752115990999999999986202---589---98358999999999999
Q 001448 334 QDYALQVMDMLRADIFVDSHALACVLYILRIGVTDQMTEPTQRSFLVFLGKQLQ---AVD---ASPFMKIAALRTLSYTL 407 (1075)
Q Consensus 334 ~~~~~~i~~ll~~~~~~~~~~r~~v~~ILr~~i~~~L~E~~Q~~~~~~l~~~~~---~~~---~s~~~lv~aL~el~~Li 407 (1075)
..++..++..+. .+|.- .+ +.-...+ ..| .+-..-.++...++.|.
T Consensus 298 ~~l~p~ll~~l~------------------------~~e~d-~~---~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la 349 (852)
T 4fdd_A 298 PKLIPVLVNGMK------------------------YSDID-II---LLKGDVEGGSGGDDTISDWNLRKCSAAALDVLA 349 (852)
T ss_dssp HHHHHHHHHHTS------------------------CCHHH-HH---HHHC------------CCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC------------------------CCHHH-HH---HHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 889999998757------------------------86767-99---866984432224564011169999999999998
Q ss_pred HHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 9949996446998999999982178768999999999999870983001179999999
Q 001448 408 KTLGEVPSEFKEVLDSTVVAAVSHSSQLVRIEAALTLRALAEVDPTCVSGLITYGVTT 465 (1075)
Q Consensus 408 ~~LGsa~~~~~~~l~d~L~~ll~hps~svRi~AA~cLr~~~~a~P~~l~~ll~~~~~~ 465 (1075)
..+|. .+...+...+...+.+++..+|.+|+++|..++...+....+.+...+..
T Consensus 350 ~~~~~---~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~ 404 (852)
T 4fdd_A 350 NVYRD---ELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPH 404 (852)
T ss_dssp HHHGG---GGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHH
T ss_pred HHCCH---HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf 74618---78999999999985599889999999999999863568899879999999
No 4
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=1.00 E-value=1 Score=98.10 Aligned_cols=134 Identities=17% Similarity=0.014 Sum_probs=55.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
Q ss_conf 98835697899999999999865763077999999999731072889999999999999318999815479999999988
Q 001448 117 KSEPQKVAGAAQCLGELYRQFGRRITSGLLETTIIAAKLMKFNEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMR 196 (1075)
Q Consensus 117 ~~s~~~~~aA~~cLG~l~~~~G~~~~s~~~e~~~~llK~lK~~~a~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r 196 (1075)
++++..|.+|+.+|+.+.+.++... ..+.....+.+..++.+...|..+...++.+....+ +....++.. ...
T Consensus 98 ~~~~~vR~~a~~~L~~l~~~~~~~~--~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~----~~~~~~l~~-~l~ 170 (588)
T 1b3u_A 98 VEETVVRDKAVESLRAISHEHSPSD--LEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVS----SAVKAELRQ-YFR 170 (588)
T ss_dssp SSCHHHHHHHHHHHHHHHTTSCHHH--HHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSC----HHHHHHHHH-HHH
T ss_pred CCHHHHHHHHHHHHHHHHHHCCHHH--HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCC----HHHHHHHHH-HHH
T ss_conf 7607999999999999999799999--999999999998507771799999999999998569----999999999-999
Q ss_pred HHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Q ss_conf 7415863589999999999998631998655425667657765335787438999999999999
Q 001448 197 FAIVDKSFVVRIAGARCLKAFAHIGGPCLGVGELDNSATHCVKAIEDPIASVRDAFAEALGSLL 260 (1075)
Q Consensus 197 ~~~~Dks~~Vr~aAa~cL~~l~~~~~~~~~~~dle~l~sl~~K~le~s~~~vR~a~A~~La~lL 260 (1075)
....|.+..||.+|++++..+....+. ..-.+.+.....+.+.+++..||.++.++++.+.
T Consensus 171 ~l~~d~~~~VR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~ 231 (588)
T 1b3u_A 171 NLCSDDTPMVRRAAASKLGEFAKVLEL---DNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIA 231 (588)
T ss_dssp HHHTCSCHHHHHHHHHHHHHHHHTSCH---HHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHH
T ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHCH---HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 984899788999999989999998167---7679999999998824992889998999999999
No 5
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=1.00 E-value=1 Score=97.85 Aligned_cols=919 Identities=12% Similarity=0.108 Sum_probs=420.2
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCH---------HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q ss_conf 89999999998511999027689999999973027740---------368869998975416999883569789999999
Q 001448 62 QRKCEDALYSLLILGARRPVRHLASVAMGRIISKGDNI---------SVYSRVSSLQGFLSDGKKSEPQKVAGAAQCLGE 132 (1075)
Q Consensus 62 Q~~l~~~L~~ll~~~~g~P~R~l~a~cla~ly~~GD~~---------~Lf~~vn~l~~~l~~~k~~s~~~~~aA~~cLG~ 132 (1075)
...+.+.|...+. .+.+.+|+..+.|++.+....... ..-+.+..+...+.+ ..++..+.+|+.++++
T Consensus 84 ~~~i~~~Ll~~l~-d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~--~~~~~~~~~al~~l~~ 160 (1230)
T 1u6g_C 84 VETIVDTLCTNML-SDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAK--QEDVSVQLEALDIMAD 160 (1230)
T ss_dssp HHHHHHHHHHHTT-CSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSC--CSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHH
T ss_conf 9999999999866-983889999999999999967974444411788999999999998757--8846799999999999
Q ss_pred HHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 99998657630779999999997310728899999999999993189998154799999999887415863589999999
Q 001448 133 LYRQFGRRITSGLLETTIIAAKLMKFNEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVDKSFVVRIAGAR 212 (1075)
Q Consensus 133 l~~~~G~~~~s~~~e~~~~llK~lK~~~a~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~Dks~~Vr~aAa~ 212 (1075)
+.+.+|..+....++.+..+++.+...+..+|..+..+++.+....+...-+.+...+++. .+. +....+|..+++
T Consensus 161 ~~~~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~~~~~l~~l~~~-L~~---~~~~~~r~~a~~ 236 (1230)
T 1u6g_C 161 MLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSE-LSK---NDSMSTTRTYIQ 236 (1230)
T ss_dssp HHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----CTTHHHHHHHH-HHH---TCSSCSCTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH-HCC---CCCHHHHHHHHH
T ss_conf 9998276778879999999999875996899999999999999856899999999999998-616---775568999999
Q ss_pred HHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCC---------CCCCC-CCCCCCC
Q ss_conf 9999986319986554256676577653357874389999999999998214887767---------88999-9999988
Q 001448 213 CLKAFAHIGGPCLGVGELDNSATHCVKAIEDPIASVRDAFAEALGSLLALGMNPQAQV---------QPKGK-GPFPPAK 282 (1075)
Q Consensus 213 cL~~l~~~~~~~~~~~dle~l~sl~~K~le~s~~~vR~a~A~~La~lLa~~~~~~~~~---------~~~~k-~~~~~~k 282 (1075)
|+..+....+..+ ...++.+...+++.+.+.+.++|.++..+++.+... ....-.+ ...-+ .+... .
T Consensus 237 ~l~~l~~~~~~~~-~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~-~~~~~~~~l~~li~~ll~~l~~d~~~~-~ 313 (1230)
T 1u6g_C 237 CIAAISRQAGHRI-GEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRR-CPKEVYPHVSTIINICLKYLTYDPNYN-Y 313 (1230)
T ss_dssp HHHHHHHHSSGGG-TTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHC-TTCCCHHHHHHHHHHHTTCCCCC------
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHCCCCCCC-C
T ss_conf 9999999868989-988999999999986689778999999999999997-848777768999999999827899888-7
Q ss_pred CHHHH----HHH--------HHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCC-C
Q ss_conf 80679----998--------8322100457888601478999999999998010146898416689999999760298-8
Q 001448 283 KLEGG----LQR--------HLALPFTRANGAKSKNMRVNLTLSWVYFLQAIRLKYFHPDSELQDYALQVMDMLRADI-F 349 (1075)
Q Consensus 283 ~l~~~----l~~--------~Ls~~F~k~~~~~~r~~R~Gi~~ayv~fl~~lg~~~le~~~~~~~~~~~i~~ll~~~~-~ 349 (1075)
.-++. +.. -....|... ...+.++|.....+...+....+. .+..|...++..+.... .
T Consensus 314 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~~~vR~~A~~~l~~l~~~~~~-------~~~~~~~~l~~~l~~~l~d 385 (1230)
T 1u6g_C 314 DDEDEDENAMDADGGDDDDQGSDDEYSDD-DDMSWKVRRAAAKCLDAVVSTRHE-------MLPEFYKTVSPALISRFKE 385 (1230)
T ss_dssp --------------------------------CTTHHHHHHHHHHHHHHTTCCT-------THHHHHTTTHHHHHSTTSC
T ss_pred CCCCCCCCCCCCCCCCCCHHHCCCCCCCC-CCCCHHHHHHHHHHHHHHHHHCHH-------HHHHHHHHHHHHHHHHCCC
T ss_conf 64411011223344653011001366645-556779999999999999974666-------7999999998999987179
Q ss_pred CCHHHH----HHHHHHHHHHHHCCC-------------C-HHHHH----HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 887799----999999997521159-------------9-09999----9999998620258998358999999999999
Q 001448 350 VDSHAL----ACVLYILRIGVTDQM-------------T-EPTQR----SFLVFLGKQLQAVDASPFMKIAALRTLSYTL 407 (1075)
Q Consensus 350 ~~~~~r----~~v~~ILr~~i~~~L-------------~-E~~Q~----~~~~~l~~~~~~~~~s~~~lv~aL~el~~Li 407 (1075)
-+...| .++..+++.. +... | ..... .++..+.+.+. +.+......++..++.++
T Consensus 386 ~~~~Vr~~a~~~l~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~--~~~~~vr~~~~~~L~~l~ 462 (1230)
T 1u6g_C 386 REENVKADVFHAYLSLLKQT-RPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMK--EKSVKTRQCCFNMLTELV 462 (1230)
T ss_dssp SSSHHHHHHHHHHHHHHHHH-CCC------------CCCHHHHHHHHTTHHHHHHHHHTT--CSCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHH-CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHH
T ss_conf 86579999999999999972-424343467520135645599999874699999999861--377879999999999999
Q ss_pred HHHCCCCHHHHHHHHHHHHHHHCCCCH--HHHHHHHHHHHHHHHHC-CC----CHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 994999644699899999998217876--89999999999998709-83----001179999999985542101124886
Q 001448 408 KTLGEVPSEFKEVLDSTVVAAVSHSSQ--LVRIEAALTLRALAEVD-PT----CVSGLITYGVTTLNALRENVSFEKGSS 480 (1075)
Q Consensus 408 ~~LGsa~~~~~~~l~d~L~~ll~hps~--svRi~AA~cLr~~~~a~-P~----~l~~ll~~~~~~L~~~~~~l~~~~~~~ 480 (1075)
..++....+..+.+.+.++..+..++. .+|.+++.++..+.... |. ++.++++.++..++. +
T Consensus 463 ~~~~~~l~~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l~d-----------~ 531 (1230)
T 1u6g_C 463 NVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGD-----------P 531 (1230)
T ss_dssp HHSTTTTGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTC-----------S
T ss_pred HHCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCC-----------C
T ss_conf 97611057779999999999974878851689999999999998389887886799999999999714-----------2
Q ss_pred CCCHHHHHCHHH-HHHHHHHHHCCC---CC--CCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 421133241189-999999831499---99--865775068999999986301587613487999999999997530699
Q 001448 481 LMVELDSLHGQA-TVVAALIFISPK---LP--LGYPARLPKLVLEVSKKMLTESSRNTLAATVEKEAGWLLLSSLLASMP 554 (1075)
Q Consensus 481 ~~~~~~~~~G~a-~aLAaLl~~~~~---~p--Lgip~~~~~~Vl~~A~~LLk~~~~~~~~a~~~~qagWiLi~sLmtl~g 554 (1075)
. + ++...+ .+++.++..... .. -.. .....++..-.+.++....+. ..| +.+=-.+|.++...|
T Consensus 532 ~---~-~v~~~al~~l~~l~~~~~~~~~~~~~~~~--~~~~~ll~~ll~~l~~~d~~~---~vr-~~a~~~lg~L~~~~g 601 (1230)
T 1u6g_C 532 F---Y-KITSEALLVTQQLVKVIRPLDQPSSFDAT--PYIKDLFTCTIKRLKAADIDQ---EVK-ERAISCMGQIICNLG 601 (1230)
T ss_dssp S---H-HHHHHHHHHHHHHHHHHCCSSSCCCCCCH--HHHHHHHHHHHHHHSCSSSCH---HHH-HHHHHHHHHHHHHTG
T ss_pred C---H-HHHHHHHHHHHHHHHHHCCCCCCCCCCHH--HHHHHHHHHHHHHHHCCCCCH---HHH-HHHHHHHHHHHHHHC
T ss_conf 4---6-89999999999999871675556532327--899999999999873269988---999-999999999999827
Q ss_pred HHHHHHCHHHHHHHHHHHCCCCCHHH--HH------------HCCCHH-------------HHHHHHHHHHHHHHHHHHH
Q ss_conf 24674249899999985249992013--31------------104036-------------7899999989999999982
Q 001448 555 KEELEDQVFDILSLWATLFSGNAEHI--IK------------QHGDLT-------------SKICVLSTAVDALTAFVRC 607 (1075)
Q Consensus 555 ~~~Vk~hlsqLLlLWk~~l~~s~k~~--~~------------~~~e~~-------------~~L~~r~~AL~aL~sFL~~ 607 (1075)
+.+ ..++++++-.-...+....... .+ +-.+|. -+-..|..|+.|+..++++
T Consensus 602 ~~~-~~~~~~~l~~L~~~l~~e~~r~~~~~al~~i~~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~r~~a~~al~~l~~~ 680 (1230)
T 1u6g_C 602 DNL-GSDLPNTLQIFLERLKNEITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKN 680 (1230)
T ss_dssp GGC-CTHHHHHHHHHHHHTTSSSHHHHHHHHHHHHTTCSSCCCCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHH
T ss_pred CHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHC
T ss_conf 032-4438899999998844530599999999999818564436888999999999999867888999999999999960
Q ss_pred CCCCCCCCCCCHHHHHHH------------HHHHHHHHHHHHHHHHCCCC----CHHHH-H------------HHHHHHH
Q ss_conf 178988786420256998------------78878877788763208998----62678-9------------9999999
Q 001448 608 FLSPDAANSGILLQPVMV------------YLSRALSYISTIAAKELPNI----KPAMD-I------------FIIRTLI 658 (1075)
Q Consensus 608 ~~~~~lt~~~~Ll~~~~~------------~L~~aL~~l~~i~~~~~p~l----k~~~~-l------------~r~RiLq 658 (1075)
. ...+ +.+. +.+++. ....++..+..+.+..++.. ..... + ....++.
T Consensus 681 ~-~~~~-~~~~-v~~~l~~ll~ll~~~D~~~~~~~~~~L~~l~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~l~~ 757 (1230)
T 1u6g_C 681 Y-SDSL-TAAM-IDAVLDELPPLISESDMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPLLQGGALSAMLD 757 (1230)
T ss_dssp C-CTTC-CHHH-HHHHHTTCGGGSCTTCHHHHHHHHHHHHHHTTSCGGGGGGTTTTTHHHHHHHHTCTTCCHHHHHHHHH
T ss_pred C-CCCC-CHHH-HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
T ss_conf 4-3338-9899-99999998763575418789999999999988491267776776899999997586210578999999
Q ss_pred HHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCC-CCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCC-CCCCCC
Q ss_conf 98419999777777278999997103799865-4112354310346676799989987278777321399878-988530
Q 001448 659 AYQSLPDPVSYKSDHPQLIKLCTTPYRDASAC-EESSCLRLLLDKRDAWLGPWIPGRDWFEDELCAFQGGKDG-LMPCVW 736 (1075)
Q Consensus 659 ~y~~L~~~~~~~~~~~~LL~~~v~~Fsdp~~~-~~ss~l~sl~~~~d~~lg~w~~~~d~ie~~L~~~~~~~~g-~lp~~~ 736 (1075)
+|..+.....-...+..++..+......++.. ........+.. -+....... +...+ .++.++
T Consensus 758 ~~~~l~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~a~--------------~i~~~~~~~-~~~~~~~~~~~~ 822 (1230)
T 1u6g_C 758 FFQALVVTGTNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAK--------------CVAALTRAC-PKEGPAVVGQFI 822 (1230)
T ss_dssp HHHHHHTTCCTTCSHHHHHHHHSTTTTTC----CCHHHHHHHHH--------------HHHHHHHHS-CCCSHHHHTTTT
T ss_pred HHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHH--------------HHHHHHHHC-CHHHHHHHHHHH
T ss_conf 99999834788788999999985003578873200010489999--------------999999846-566689999999
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHH---HHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHH-HHHHH-----HHH-
Q ss_conf 2456788988861479999999999---9871367852476899999999971464137899999-99999-----999-
Q 001448 737 ENEVSSFPQPETIKKTLVNQMLLCF---GIMFASQHSSGMLSLLGIIEQCLKAGKKQSWHAASVT-NICVG-----LLA- 806 (1075)
Q Consensus 737 ~~~~~~~p~p~p~~tsvVdaai~LF---~~vFp~~~~k~q~s~LE~l~~~i~~~k~~~R~~Ai~v-Nv~~A-----ll~- 806 (1075)
.. .-.|. ...+....+...+ |.-.+..+ ..++.+.+..++....-.-|..|... ...+. ++-
T Consensus 823 ~~----~~~~~-~~~~~~~~~l~~l~~~g~~~~~~~---~~~l~~~~~~~l~~~~~~Vr~aAa~aLg~l~~~~~~~~lp~ 894 (1230)
T 1u6g_C 823 QD----VKNSR-STDSIRLLALLSLGEVGHHIDLSG---QLELKSVILEAFSSPSEEVKSAASYALGSISVGNLPEYLPF 894 (1230)
T ss_dssp TT----TTTTT-CCHHHHHHHHHHHHHHHHHSCCCS---CTHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HH----HCCCC-CCHHHHHHHHHHHHHHCCCCCCCC---CCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_conf 98----37887-667999999999998615678765---64189999998479977899999999687752699988999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCH----HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 999986108998886899999999999882588228----9999997501034588304689999999999860776544
Q 001448 807 GLKALLNLRPQTLGSEVLNSIQAIFLSILAEGDICA----SQRRALLLGDLTVVTDANYAGSIALAIGCIHRSAGGMALS 882 (1075)
Q Consensus 807 aLk~~~~~~~~~~~~~v~~~~~~ll~~~l~~~d~~~----~~r~aalv~~iv~~~dp~~Ra~~aLALG~I~r~vGgma~~ 882 (1075)
.++.+.. +++.+..+..-++.++...+... ...+-..+-+.....|...|.-.+=++|.+-.....--..
T Consensus 895 ll~~l~~------~~~~~~~~l~al~e~i~~~~~~~~~~~~~~i~~~L~~~~~~~~~~~r~~~a~~lg~l~~~~~~~l~p 968 (1230)
T 1u6g_C 895 VLQEITS------QPKRQYLLLHSLKEIISSASVVGLKPYVENIWALLLKHCECAEEGTRNVVAECLGKLTLIDPETLLP 968 (1230)
T ss_dssp HHHHHHS------CGGGHHHHHHHHHHHHHSSCSTTTHHHHHHHHHHHTTCCCCSSTTHHHHHHHHHHHHHHSSGGGTHH
T ss_pred HHHHHHC------CCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHH
T ss_conf 9998726------6032498899999998238766677669999999998733830446899998875665067688889
Q ss_pred CC---CC---HH--HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCC-CC
Q ss_conf 44---30---35--898999999999726975434254799999997026999740687999999999985099887-88
Q 001448 883 SL---VP---AT--MWSLHGLLLTIEAAGFSFVSHVQATLGLAMEILLSEENGWVDLQQGVGRLINAIVAVLGPELA-PG 953 (1075)
Q Consensus 883 ~L---l~---~~--~WaL~aL~~i~dsaG~~f~~~v~stL~ll~~lll~~~~~~~~~~~~igr~l~alI~~LGPeLq-~~ 953 (1075)
.+ ++ +. .|++.++.-++...+..+.+|+.+-+..+++ .+.++ ..++++....++++++.. +|++- +.
T Consensus 969 ~l~~~l~~~~~~~R~~~~~~l~~~~~~~~~~~~~~l~~~~~~ll~-~l~d~--~~~vr~~a~~~l~~~~~~-~~~~~~~~ 1044 (1230)
T 1u6g_C 969 RLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLLKNCIGDFLK-TLEDP--DLNVRRVALVTFNSAAHN-KPSLIRDL 1044 (1230)
T ss_dssp HHTTTSSSSCHHHHHHHHHHTGGGCCSSCCTHHHHHHHHSTTTHH-HHSSS--STHHHHHHHHHHHHHHHH-CGGGTGGG
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH-HCCCC--CHHHHHHHHHHHHHHHHC-CHHHHHHH
T ss_conf 999985699788999999999999706823358989998999998-64898--587999999999999842-85768977
Q ss_pred -CCHHHHHHC------C-----CC-------CCC--CHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf -203466302------2-----45-------888--53589988557741268976616889999995358985679999
Q 001448 954 -SIFFSRCKV------S-----AW-------QCS--SPKWSVRFTQQLVLFAPQAVSVHSHVQTLLSTLSSRQPILRHLA 1012 (1075)
Q Consensus 954 -s~~~~~~~~------~-----~~-------~~~--~~~eai~clQqL~lFAP~~v~~~~lV~~L~~~L~S~~~~Lr~aa 1012 (1075)
..++-.... . .+ |+. +...|..|+=.+.-+.+..++...+++.....|.- +...|.-+
T Consensus 1045 l~~~lp~l~~~~~~~~~~~~~v~~gp~k~~vd~~l~~rk~a~~~~~~ll~~~~~~i~~~~~~~~~~~gl~d-~~di~~~~ 1123 (1230)
T 1u6g_C 1045 LDTVLPHLYNETKVRKELIREVEMGPFKHTVDDGLDIRKAAFECMYTLLDSCLDRLDIFEFLNHVEDGLKD-HYDIKMLT 1123 (1230)
T ss_dssp HHHHHHHHHHTTSCCGGGEEEEEETTEEEEEETHHHHHHHHHHHHHHHHHSSCSSSCHHHHHHHHHHTTSS-CHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCC-HHHHHHHH
T ss_conf 98898999988302687601330589602367748999999999999999888747899999999804676-68899999
Q ss_pred HHHHHHHHCCCHHHHHH--HCHHHHHHHHHCCCCC-----------HHHHHHHHHHHHHHH
Q ss_conf 99999988009145764--4059899874065789-----------789999999864310
Q 001448 1013 VSTLRHLIEKDPDSVIE--ERIEGNLFHMLDEETD-----------SEYVKSYTLCLAYFS 1060 (1075)
Q Consensus 1013 v~cLrqL~qr~a~~v~~--~~le~~Lf~~LD~e~d-----------~~l~~~~~~~~~~~~ 1060 (1075)
...|-+|++..+.+|.. +.+.+.|=..|...+. .|++|....|.....
T Consensus 1124 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qe~e~~~e~~r~~~r~~~~l~ 1184 (1230)
T 1u6g_C 1124 FLMLVRLSTLCPSAVLQRLDRLVEPLRATCTTKVKANSVKQEFEKQDELKRSAMRAVAALL 1184 (1230)
T ss_dssp HHHHHHHHHSCCHHHHTTTTTTHHHHHHHHHCCCCTTSCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999840879899999999999999984114634365248899999999999999998
No 6
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=1.00 E-value=1 Score=90.40 Aligned_cols=462 Identities=12% Similarity=0.044 Sum_probs=234.6
Q ss_pred HHHHHHHHHHCC-CCHHHHHHHHHHHHHHHCCCCCH------HHHH----------HHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 999999985119-99027689999999973027740------3688----------699989754169998835697899
Q 001448 65 CEDALYSLLILG-ARRPVRHLASVAMGRIISKGDNI------SVYS----------RVSSLQGFLSDGKKSEPQKVAGAA 127 (1075)
Q Consensus 65 l~~~L~~ll~~~-~g~P~R~l~a~cla~ly~~GD~~------~Lf~----------~vn~l~~~l~~~k~~s~~~~~aA~ 127 (1075)
....|..++... ..+.+|...+..|.......+.. ..|. .-+.+...+. +.++..|..+.
T Consensus 40 ~~~~l~~il~~~~~~~~vR~~A~~~lk~~i~~~w~~~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~---~~~~~vr~~~~ 116 (861)
T 2bpt_A 40 FAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVKTQQFAQRWITQVSPEAKNQIKTNALTALV---SIEPRIANAAA 116 (861)
T ss_dssp HHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHT---CSSHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHC---CCCHHHHHHHH
T ss_conf 999999998378998679999999987022575748789999767662999999999999999877---99637999999
Q ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHCCCCCC--CHHHHHHHHHHHHHHHCCCC--
Q ss_conf 99999999986576307799999999973107-28899999999999993189998--15479999999988741586--
Q 001448 128 QCLGELYRQFGRRITSGLLETTIIAAKLMKFN-EEFVRQEALLLLQNALEGSGGSA--AASAYSEAFRLIMRFAIVDK-- 202 (1075)
Q Consensus 128 ~cLG~l~~~~G~~~~s~~~e~~~~llK~lK~~-~a~~R~~~l~~L~kil~g~g~~~--~~~~~~di~K~~~r~~~~Dk-- 202 (1075)
.+++.+....+.. +..++.+..++..+++. +...|..++.++..+++..+... -.....++... +-.++.|.
T Consensus 117 ~~l~~i~~~~~p~--~~w~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll~~-l~~~l~~~~~ 193 (861)
T 2bpt_A 117 QLIAAIADIELPH--GAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIA-IVQGAQSTET 193 (861)
T ss_dssp HHHHHHHHHHGGG--TCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHH-HHHHHSTTCC
T ss_pred HHHHHHHHHHCCC--CCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH-HHHHHCCCCC
T ss_conf 9999999846764--554999999999872689789999999999999972784356789889999999-9984157999
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCC-CCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 35899999999999986319986-55425667657765335787438999999999999821488776788999999998
Q 001448 203 SFVVRIAGARCLKAFAHIGGPCL-GVGELDNSATHCVKAIEDPIASVRDAFAEALGSLLALGMNPQAQVQPKGKGPFPPA 281 (1075)
Q Consensus 203 s~~Vr~aAa~cL~~l~~~~~~~~-~~~dle~l~sl~~K~le~s~~~vR~a~A~~La~lLa~~~~~~~~~~~~~k~~~~~~ 281 (1075)
+..||.+|++|+..+.......+ ...+.+.+.....+.+.+.+..+|..+.++++.+...... . -.
T Consensus 194 ~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~-~------------~~ 260 (861)
T 2bpt_A 194 SKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYT-F------------MK 260 (861)
T ss_dssp CHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGG-G------------CH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH-H------------HH
T ss_conf 8789999999999999999987067668999999999986599889999999999999999889-9------------99
Q ss_pred CCHH-HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCH-HHHHHHH
Q ss_conf 8806-7999883221004578886014789999999999980101468984166899999997602988887-7999999
Q 001448 282 KKLE-GGLQRHLALPFTRANGAKSKNMRVNLTLSWVYFLQAIRLKYFHPDSELQDYALQVMDMLRADIFVDS-HALACVL 359 (1075)
Q Consensus 282 k~l~-~~l~~~Ls~~F~k~~~~~~r~~R~Gi~~ayv~fl~~lg~~~le~~~~~~~~~~~i~~ll~~~~~~~~-~~r~~v~ 359 (1075)
..+. +.+. .+... +.. ...++|....++|..+....... ..+. .+- +..+.... ..+..+.
T Consensus 261 ~~l~~~l~~-~~~~~-~~~---~~~~vr~~a~~~l~~l~~~~~~~--------~~~~---~~~-~~~~~~~~~~~~~~~~ 323 (861)
T 2bpt_A 261 PYMEQALYA-LTIAT-MKS---PNDKVASMTVEFWSTICEEEIDI--------AYEL---AQF-PQSPLQSYNFALSSIK 323 (861)
T ss_dssp HHHHHTHHH-HHHHH-TTC---SSHHHHHHHHHHHHHHHHHHHHH--------HHHH---HHC-TTCSCCCCCHHHHHHH
T ss_pred HHHHHHHHH-HHHHH-HCC---CCHHHHHHHHHHHHHHHHHHHHH--------HHHH---HHC-CCCCHHHHHHHHHHHH
T ss_conf 988999999-99998-737---72789999999999999878864--------3332---103-5773256999999998
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHCCC-CCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHH
Q ss_conf 99997521159909999999999862025-89983589999999999999949996446998999999982178768999
Q 001448 360 YILRIGVTDQMTEPTQRSFLVFLGKQLQA-VDASPFMKIAALRTLSYTLKTLGEVPSEFKEVLDSTVVAAVSHSSQLVRI 438 (1075)
Q Consensus 360 ~ILr~~i~~~L~E~~Q~~~~~~l~~~~~~-~~~s~~~lv~aL~el~~Li~~LGsa~~~~~~~l~d~L~~ll~hps~svRi 438 (1075)
.++...+. .|.+. -+. -|.+...-..+.+.+..+...+| ......+.+.+.+.+.+++..+|-
T Consensus 324 ~il~~ll~-~l~~~------------~~d~~d~~~~~r~~a~~~L~~l~~~~~---~~~~~~l~~~l~~~l~~~~~~~r~ 387 (861)
T 2bpt_A 324 DVVPNLLN-LLTRQ------------NEDPEDDDWNVSMSAGACLQLFAQNCG---NHILEPVLEFVEQNITADNWRNRE 387 (861)
T ss_dssp HHHHHHHH-HTTCC------------CCC-CCCCCHHHHHHHHHHHHHHHHHG---GGGHHHHHHHHHHHTTCSSHHHHH
T ss_pred HHHHHHHH-HHHHC------------CCCCCCCCCCHHHHHHHHHHHHHHHCC---HHHHHHHHHHHHHHCCCCCHHHHH
T ss_conf 89999999-98706------------653012468689999999999998740---868999999999875799726999
Q ss_pred HHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCHHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf 99999999987098-30011799999999855421011248864211332411899999998314999986577506899
Q 001448 439 EAALTLRALAEVDP-TCVSGLITYGVTTLNALRENVSFEKGSSLMVELDSLHGQATVVAALIFISPKLPLGYPARLPKLV 517 (1075)
Q Consensus 439 ~AA~cLr~~~~a~P-~~l~~ll~~~~~~L~~~~~~l~~~~~~~~~~~~~~~~G~a~aLAaLl~~~~~~pLgip~~~~~~V 517 (1075)
+|.+++..++.... ....+.++..+..+-.... ++.. ..| .....+++.+....... ..+......+
T Consensus 388 ~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~-------d~~~--~vr-~~a~~~l~~l~~~~~~~--~~~~~~~~~~ 455 (861)
T 2bpt_A 388 AAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMN-------DQSL--QVK-ETTAWCIGRIADSVAES--IDPQQHLPGV 455 (861)
T ss_dssp HHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGG-------CSCH--HHH-HHHHHHHHHHHHHHGGG--SCTTTTHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCC-------CCCH--HHH-HHHHHHHHHHHHHHHHH--CCCHHHHHHH
T ss_conf 9999999998599878889989999999998828-------9959--999-99999999999873540--4878889999
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCC--CHHHHHHCHHHHHHHHHHHCCCCCHHHHHHCCCHHHHHHHHH
Q ss_conf 999998630158761348799999999999753069--924674249899999985249992013311040367899999
Q 001448 518 LEVSKKMLTESSRNTLAATVEKEAGWLLLSSLLASM--PKEELEDQVFDILSLWATLFSGNAEHIIKQHGDLTSKICVLS 595 (1075)
Q Consensus 518 l~~A~~LLk~~~~~~~~a~~~~qagWiLi~sLmtl~--g~~~Vk~hlsqLLlLWk~~l~~s~k~~~~~~~e~~~~L~~r~ 595 (1075)
+..-.+.++.. ...+..++|.|-.=.-... .++.+..++++++-.--..+.. ...++ .+|.
T Consensus 456 l~~l~~~l~~~------~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~-------~d~~~----~vr~ 518 (861)
T 2bpt_A 456 VQACLIGLQDH------PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANR-------IDNEF----NARA 518 (861)
T ss_dssp HHHHHHHHTSC------HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTC-------SCCGG----GHHH
T ss_pred HHHHHHHHCCC------HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHC-------CCCCH----HHHH
T ss_conf 99999976447------2899999999999998623135424689999999999999857-------58615----8999
Q ss_pred HHHHHHHHHHHH
Q ss_conf 989999999982
Q 001448 596 TAVDALTAFVRC 607 (1075)
Q Consensus 596 ~AL~aL~sFL~~ 607 (1075)
.++.++..+.+.
T Consensus 519 ~a~~al~~l~~~ 530 (861)
T 2bpt_A 519 SAFSALTTMVEY 530 (861)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
T ss_conf 999999999997
No 7
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=1.00 E-value=1 Score=90.25 Aligned_cols=171 Identities=16% Similarity=0.078 Sum_probs=94.9
Q ss_pred CCCHHHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf 99902768999999997302-77403688699989754169998835697899999999999865763077999999999
Q 001448 76 GARRPVRHLASVAMGRIISK-GDNISVYSRVSSLQGFLSDGKKSEPQKVAGAAQCLGELYRQFGRRITSGLLETTIIAAK 154 (1075)
Q Consensus 76 ~~g~P~R~l~a~cla~ly~~-GD~~~Lf~~vn~l~~~l~~~k~~s~~~~~aA~~cLG~l~~~~G~~~~s~~~e~~~~llK 154 (1075)
++-+-+|....+.+..+... |+.. +.+.+..++...-++++..+.+++.+||.+.+..|..- .....+..+.+
T Consensus 21 s~~~~~R~~A~~~l~~i~~~~~~~~----~~~~l~~~L~~~~d~~~~vr~~~~~~L~~~~~~~~~~~--~~~~ll~~L~~ 94 (588)
T 1b3u_A 21 NEDVQLRLNSIKKLSTIALALGVER----TRSELLPFLTDTIYDEDEVLLALAEQLGTFTTLVGGPE--YVHCLLPPLES 94 (588)
T ss_dssp CSCHHHHHHHHHTHHHHHHHSCHHH----HHHTHHHHHHHTCCCCHHHHHHHHHHHTTCSGGGTSGG--GGGGGHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHCHHH----HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHH--HHHHHHHHHHH
T ss_conf 6219999999971999999869798----99989988987557858999999999977876058598--99998999999
Q ss_pred HHCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
Q ss_conf 73107288999999999999931899981547999999998874158635899999999999986319986554256676
Q 001448 155 LMKFNEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGGPCLGVGELDNSA 234 (1075)
Q Consensus 155 ~lK~~~a~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~~~~~~~~dle~l~ 234 (1075)
.+...+..+|..++.++.++....+. +.....+.. ..+....+....+|.+|++++..++... .....+.+.
T Consensus 95 l~~~~~~~vR~~a~~~L~~l~~~~~~---~~~~~~l~~-~l~~l~~~~~~~~R~~a~~~l~~~~~~~----~~~~~~~l~ 166 (588)
T 1b3u_A 95 LATVEETVVRDKAVESLRAISHEHSP---SDLEAHFVP-LVKRLAGGDWFTSRTSACGLFSVCYPRV----SSAVKAELR 166 (588)
T ss_dssp HTTSSCHHHHHHHHHHHHHHHTTSCH---HHHHHTHHH-HHHHHHTCSSHHHHHHHGGGHHHHTTTS----CHHHHHHHH
T ss_pred HHHCCHHHHHHHHHHHHHHHHHHCCH---HHHHHHHHH-HHHHHHCCCCCHHHHHHHHHHHHHHHHC----CHHHHHHHH
T ss_conf 87476079999999999999997999---999999999-9999850777179999999999999856----999999999
Q ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHH
Q ss_conf 57765335787438999999999999
Q 001448 235 THCVKAIEDPIASVRDAFAEALGSLL 260 (1075)
Q Consensus 235 sl~~K~le~s~~~vR~a~A~~La~lL 260 (1075)
..+.+.+++++..||.++++.++.+.
T Consensus 167 ~~l~~l~~d~~~~VR~~a~~~l~~l~ 192 (588)
T 1b3u_A 167 QYFRNLCSDDTPMVRRAAASKLGEFA 192 (588)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 99999848997889999999899999
No 8
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=1.00 E-value=1 Score=87.99 Aligned_cols=375 Identities=12% Similarity=0.030 Sum_probs=209.7
Q ss_pred HHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHCCCCCHH------HHH---------HHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 99999999985119-990276899999999730277403------688---------69998975416999883569789
Q 001448 63 RKCEDALYSLLILG-ARRPVRHLASVAMGRIISKGDNIS------VYS---------RVSSLQGFLSDGKKSEPQKVAGA 126 (1075)
Q Consensus 63 ~~l~~~L~~ll~~~-~g~P~R~l~a~cla~ly~~GD~~~------Lf~---------~vn~l~~~l~~~k~~s~~~~~aA 126 (1075)
......|..++... ..+.+|...+..|..+....+... .|. .-+.+...+. +.++.. ..+
T Consensus 34 ~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~---~~~~~v-~~~ 109 (462)
T 1ibr_B 34 PTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLG---TETYRP-SSA 109 (462)
T ss_dssp HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTT---CCCSSS-CSH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHC---CCCCHH-HHH
T ss_conf 7899999999876899867999999999876544336778998850024899999999999999867---997105-599
Q ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCC--
Q ss_conf 999999999986576307799999999973107--2889999999999999318999815479999999988741586--
Q 001448 127 AQCLGELYRQFGRRITSGLLETTIIAAKLMKFN--EEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVDK-- 202 (1075)
Q Consensus 127 ~~cLG~l~~~~G~~~~s~~~e~~~~llK~lK~~--~a~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~Dk-- 202 (1075)
..|++.+....+.. ...++.+..++..+.+. +...|..++.+|+.+++...+.........+... +-.++.|.
T Consensus 110 ~~~i~~ia~~~~~~--~~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~-l~~~l~~~~~ 186 (462)
T 1ibr_B 110 SQCVAGIACAEIPV--NQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTA-IIQGMRKEEP 186 (462)
T ss_dssp HHHHHHHHHHHGGG--TCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHH-HHHHHSTTCC
T ss_pred HHHHHHHHHHHCCC--CCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-HHHHHCCCCC
T ss_conf 99999999976650--02699999999986267887899999999999999818715347679999999-9998679999
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCCHH-HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 3589999999999998631998655425-667657765335787438999999999999821488776788999999998
Q 001448 203 SFVVRIAGARCLKAFAHIGGPCLGVGEL-DNSATHCVKAIEDPIASVRDAFAEALGSLLALGMNPQAQVQPKGKGPFPPA 281 (1075)
Q Consensus 203 s~~Vr~aAa~cL~~l~~~~~~~~~~~dl-e~l~sl~~K~le~s~~~vR~a~A~~La~lLa~~~~~~~~~~~~~k~~~~~~ 281 (1075)
+..||.+|++|+..+.......+....+ +.+.....+...+++..+|.++.++++.+.-.... . -.+
T Consensus 187 ~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~-~--~~~--------- 254 (462)
T 1ibr_B 187 SNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQ-Y--MET--------- 254 (462)
T ss_dssp CHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGG-G--CTT---------
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH-H--HHH---------
T ss_conf 8999999999999999999984323678989999999853799789999999999999999899-9--998---------
Q ss_pred CCHH-HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHH-------C-----CCCC-CCCC-CHHHHHHHHH----H
Q ss_conf 8806-7999883221004578886014789999999999980-------1-----0146-8984-1668999999----9
Q 001448 282 KKLE-GGLQRHLALPFTRANGAKSKNMRVNLTLSWVYFLQAI-------R-----LKYF-HPDS-ELQDYALQVM----D 342 (1075)
Q Consensus 282 k~l~-~~l~~~Ls~~F~k~~~~~~r~~R~Gi~~ayv~fl~~l-------g-----~~~l-e~~~-~~~~~~~~i~----~ 342 (1075)
.++ +.+. .+...+ +.. ..++|....+.|..+.... + +.|- ..-. ....|+..++ .
T Consensus 255 -~~~~~l~~-~~~~~~-~~~---~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~ 328 (462)
T 1ibr_B 255 -YMGPALFA-ITIEAM-KSD---IDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQ 328 (462)
T ss_dssp -TTTTTHHH-HHHHHH-HCS---SHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHH-HHHHHH-CCC---CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHH
T ss_conf -88889999-999998-288---609999999999999998887887601000037886303599999876640079999
Q ss_pred HHCCC----CCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHC-CCCHHH
Q ss_conf 76029----8888779999999999752115990999999999986202589983589999999999999949-996446
Q 001448 343 MLRAD----IFVDSHALACVLYILRIGVTDQMTEPTQRSFLVFLGKQLQAVDASPFMKIAALRTLSYTLKTLG-EVPSEF 417 (1075)
Q Consensus 343 ll~~~----~~~~~~~r~~v~~ILr~~i~~~L~E~~Q~~~~~~l~~~~~~~~~s~~~lv~aL~el~~Li~~LG-sa~~~~ 417 (1075)
.+... -..+...|++..-.|..... .+|+.--..++..+...+. +++...-..++..++.+....+ ....+.
T Consensus 329 ~l~~~d~d~~~~~~~~r~~a~~~L~~l~~-~~~~~~~~~~~~~l~~~l~--~~~~~~r~aal~~l~~l~~~~~~~~~~~~ 405 (462)
T 1ibr_B 329 TLTKQDENDDDDDWNPCKAAGVCLMLLAT-CCEDDIVPHVLPFIKEHIK--NPDWRYRDAAVMAFGCILEGPEPSQLKPL 405 (462)
T ss_dssp HTTCCCSSCCTTCCSHHHHHHHHHHHHHH-HTTTTHHHHHHHHHHHHTT--CSSHHHHHHHHHHHHHTSSSSCTTTTCTT
T ss_pred HHHHCCCCCCCCCCHHHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 98744444444433288999999999998-6358789999999999843--89758999999999998648767778988
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCH--HHHHHHHHHH
Q ss_conf 99899999998217876899999999999987098300--1179999999
Q 001448 418 KEVLDSTVVAAVSHSSQLVRIEAALTLRALAEVDPTCV--SGLITYGVTT 465 (1075)
Q Consensus 418 ~~~l~d~L~~ll~hps~svRi~AA~cLr~~~~a~P~~l--~~ll~~~~~~ 465 (1075)
...+...++..+.+|+..||.+|+|+|..++...+..+ .+.+...+..
T Consensus 406 l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~l~~ll~~ 455 (462)
T 1ibr_B 406 VIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQC 455 (462)
T ss_dssp TTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGGGCCSTTTHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
T ss_conf 99999999999669978999999999999998620114657789999999
No 9
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=1.00 E-value=1 Score=86.80 Aligned_cols=234 Identities=11% Similarity=0.047 Sum_probs=145.6
Q ss_pred HHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHCCCCC----------HHHHH-----HHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 99999999985119-9902768999999997302774----------03688-----69998975416999883569789
Q 001448 63 RKCEDALYSLLILG-ARRPVRHLASVAMGRIISKGDN----------ISVYS-----RVSSLQGFLSDGKKSEPQKVAGA 126 (1075)
Q Consensus 63 ~~l~~~L~~ll~~~-~g~P~R~l~a~cla~ly~~GD~----------~~Lf~-----~vn~l~~~l~~~k~~s~~~~~aA 126 (1075)
......|..++... +.+.+|...+.+|......-+. ..+.+ .-+.+...+. +.++.. ..+
T Consensus 34 ~~~~~~L~~~l~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~w~~l~~~~~~~ik~~ll~~l~---~~~~~~-~~~ 109 (876)
T 1qgr_A 34 PTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLHTLG---TETYRP-SSA 109 (876)
T ss_dssp HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTT---TCCSSS-CHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHC---CCCHHH-HHH
T ss_conf 4699999999857899879999999999876055434767899864406999999999999999867---994788-999
Q ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCC--
Q ss_conf 999999999986576307799999999973107--2889999999999999318999815479999999988741586--
Q 001448 127 AQCLGELYRQFGRRITSGLLETTIIAAKLMKFN--EEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVDK-- 202 (1075)
Q Consensus 127 ~~cLG~l~~~~G~~~~s~~~e~~~~llK~lK~~--~a~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~Dk-- 202 (1075)
+.|++.+....+. ....++.+..++..+.+. ....|..++.++.++++..++..-.....+++.. +..++.|.
T Consensus 110 ~~~l~~i~~~~~~--~~~w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~-l~~~l~~~~~ 186 (876)
T 1qgr_A 110 SQCVAGIACAEIP--VNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTA-IIQGMRKEEP 186 (876)
T ss_dssp HHHHHHHHHHHGG--GTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHH-HHHHHSTTCS
T ss_pred HHHHHHHHHHHCC--CCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH-HHHHHCCCCC
T ss_conf 9999999984676--225688999999987088987999999999999998745876678679999999-9986167999
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCCCC-CHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 3589999999999998631998655-425667657765335787438999999999999821488776788999999998
Q 001448 203 SFVVRIAGARCLKAFAHIGGPCLGV-GELDNSATHCVKAIEDPIASVRDAFAEALGSLLALGMNPQAQVQPKGKGPFPPA 281 (1075)
Q Consensus 203 s~~Vr~aAa~cL~~l~~~~~~~~~~-~dle~l~sl~~K~le~s~~~vR~a~A~~La~lLa~~~~~~~~~~~~~k~~~~~~ 281 (1075)
+..||..|++|+..+....+..+.. .+.+.+...+...+++.+..+|.++.++++.++......- .+
T Consensus 187 ~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~---~~--------- 254 (876)
T 1qgr_A 187 SNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYM---ET--------- 254 (876)
T ss_dssp CHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGC---HH---------
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH---HH---------
T ss_conf 889999999999999999999887178999999999987179988999999999999999869999---98---------
Q ss_pred CCHH-HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 8806-799988322100457888601478999999999998
Q 001448 282 KKLE-GGLQRHLALPFTRANGAKSKNMRVNLTLSWVYFLQA 321 (1075)
Q Consensus 282 k~l~-~~l~~~Ls~~F~k~~~~~~r~~R~Gi~~ayv~fl~~ 321 (1075)
.+. +.+. .+...+ +.. ..++|....+.|..+...
T Consensus 255 -~~~~~l~~-~~~~~~-~~~---~~~v~~~al~~l~~l~~~ 289 (876)
T 1qgr_A 255 -YMGPALFA-ITIEAM-KSD---IDEVALQGIEFWSNVCDE 289 (876)
T ss_dssp -HHTTTHHH-HHHHHH-TCS---SHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHH-HHHHHH-CCC---CHHHHHHHHHHHHHHHHH
T ss_conf -87789999-999996-387---349999999999999887
No 10
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=1.00 E-value=1 Score=85.04 Aligned_cols=196 Identities=11% Similarity=0.035 Sum_probs=133.8
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 89999999998511999027689999999973027-74036886999897541699988356978999999999998657
Q 001448 62 QRKCEDALYSLLILGARRPVRHLASVAMGRIISKG-DNISVYSRVSSLQGFLSDGKKSEPQKVAGAAQCLGELYRQFGRR 140 (1075)
Q Consensus 62 Q~~l~~~L~~ll~~~~g~P~R~l~a~cla~ly~~G-D~~~Lf~~vn~l~~~l~~~k~~s~~~~~aA~~cLG~l~~~~G~~ 140 (1075)
+..+++.|.+.+.. +.+.+|+-++.+++.+.... .....-+.+..+...++++ .++..+.+|+.+++.+.+.++..
T Consensus 93 ~~~ik~~ll~~l~~-~~~~vr~~~~~~l~~i~~~~~p~~~w~~ll~~L~~~l~~~--~~~~~r~~al~~l~~l~~~~~~~ 169 (861)
T 2bpt_A 93 KNQIKTNALTALVS-IEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAE--QPENVKRASLLALGYMCESADPQ 169 (861)
T ss_dssp HHHHHHHHHHHHTC-SSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTT--SCHHHHHHHHHHHHHHHHTSSTT
T ss_pred HHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHHHHCCCHH
T ss_conf 99999999998779-9637999999999999984676455499999999987268--97899999999999999727843
Q ss_pred ---HHCCHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHHCCCCCCC-HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf ---6307799999999973107--288999999999999931899981-5479999999988741586358999999999
Q 001448 141 ---ITSGLLETTIIAAKLMKFN--EEFVRQEALLLLQNALEGSGGSAA-ASAYSEAFRLIMRFAIVDKSFVVRIAGARCL 214 (1075)
Q Consensus 141 ---~~s~~~e~~~~llK~lK~~--~a~~R~~~l~~L~kil~g~g~~~~-~~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL 214 (1075)
+....+..+..+.+.+... +..+|..++.++..++.-.+...+ +.....+++. ......|....||..+++|+
T Consensus 170 ~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~-l~~~~~~~~~~~r~~a~~~l 248 (861)
T 2bpt_A 170 SQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQV-VCEATQAEDIEVQAAAFGCL 248 (861)
T ss_dssp SSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHH-HHHHHTCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH-HHHHHCCCCHHHHHHHHHHH
T ss_conf 56789889999999998415799987899999999999999999870676689999999-99986599889999999999
Q ss_pred HHHHHHCCCCCCCCHHH-HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 99986319986554256-6765776533578743899999999999982
Q 001448 215 KAFAHIGGPCLGVGELD-NSATHCVKAIEDPIASVRDAFAEALGSLLAL 262 (1075)
Q Consensus 215 ~~l~~~~~~~~~~~dle-~l~sl~~K~le~s~~~vR~a~A~~La~lLa~ 262 (1075)
..+....+.++ ...++ .+..++++.+++.+..+|..+.+.++.+...
T Consensus 249 ~~l~~~~~~~~-~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~ 296 (861)
T 2bpt_A 249 CKIMSKYYTFM-KPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEE 296 (861)
T ss_dssp HHHHHHHGGGC-HHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf 99999988999-9988999999999987377278999999999999987
Done!