BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 001451
         (1075 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3FRR|A Chain A, Structure Of Human Ist1(Ntd) - (Residues 1-189)(P21)
          Length = 191

 Score =  113 bits (283), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 61/190 (32%), Positives = 113/190 (59%), Gaps = 2/190 (1%)

Query: 1   MLHRSFKPAKCKTSLKLASSRIKLLKNKRGAQVKQLKRELAQLLESGQDQTARIRVEHVV 60
           ML   FK  + + +L+L  +R+KLL+ K+    ++ ++E+A  L +G+D+ ARIRVEH++
Sbjct: 3   MLGSGFKAERLRVNLRLVINRLKLLEKKKTELAQKARKEIADYLAAGKDERARIRVEHII 62

Query: 61  REENTMAAYDLLEIYCELIVTRLPIVESQKNCPIDLKEAICSVIFASPRC-ADIPELMDV 119
           RE+  + A ++LE+YC+L++ R  +++S K     L E++ ++I+A+PR  +++ EL  V
Sbjct: 63  REDYLVEAMEILELYCDLLLARFGLIQSMKELDSGLAESVSTLIWAAPRLQSEVAELKIV 122

Query: 120 RKMFTSKYGKDFVSAAAELRPDCGVSRLLVEKLSVKAPDGPTKIKILTAIAEEHNIKWDP 179
                +KY K++            V+  L+ KLSV+AP      + L  IA+ +N+ ++P
Sbjct: 123 ADQLCAKYSKEY-GKLCRTNQIGTVNDRLMHKLSVEAPPKILVERYLIEIAKNYNVPYEP 181

Query: 180 KSFGEKDSRP 189
            S    ++ P
Sbjct: 182 DSVVMAEAPP 191


>pdb|3FRS|A Chain A, Structure Of Human Ist1(Ntd) (Residues 1-189)(P43212)
          Length = 189

 Score =  111 bits (277), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 59/185 (31%), Positives = 111/185 (60%), Gaps = 2/185 (1%)

Query: 6   FKPAKCKTSLKLASSRIKLLKNKRGAQVKQLKRELAQLLESGQDQTARIRVEHVVREENT 65
           FK  + + +L+L  +R+KLL+ K+    ++ ++E+A  L +G+D+ ARIRVEH++RE+  
Sbjct: 6   FKAERLRVNLRLVINRLKLLEKKKTELAQKARKEIADYLAAGKDERARIRVEHIIREDYL 65

Query: 66  MAAYDLLEIYCELIVTRLPIVESQKNCPIDLKEAICSVIFASPRC-ADIPELMDVRKMFT 124
           + A ++LE+YC+L++ R  +++S K     L E++ ++I+A+PR  +++ EL  V     
Sbjct: 66  VEAMEILELYCDLLLARFGLIQSMKELDSGLAESVSTLIWAAPRLQSEVAELKIVADQLC 125

Query: 125 SKYGKDFVSAAAELRPDCGVSRLLVEKLSVKAPDGPTKIKILTAIAEEHNIKWDPKSFGE 184
           +KY K++            V+  L+ KLSV+AP      + L  IA+ +N+ ++P S   
Sbjct: 126 AKYSKEY-GKLCRTNQIGTVNDRLMHKLSVEAPPKILVERYLIEIAKNYNVPYEPDSVVM 184

Query: 185 KDSRP 189
            ++ P
Sbjct: 185 AEAPP 189


>pdb|3GGY|A Chain A, Crystal Structure Of S.Cerevisiae Ist1 N-Terminal Domain
 pdb|3GGY|B Chain B, Crystal Structure Of S.Cerevisiae Ist1 N-Terminal Domain
 pdb|3GGZ|A Chain A, Crystal Structure Of S.Cerevisiae Ist1 N-Terminal Domain
           In Complex With Did2 Mim Motif
 pdb|3GGZ|B Chain B, Crystal Structure Of S.Cerevisiae Ist1 N-Terminal Domain
           In Complex With Did2 Mim Motif
 pdb|3GGZ|C Chain C, Crystal Structure Of S.Cerevisiae Ist1 N-Terminal Domain
           In Complex With Did2 Mim Motif
 pdb|3GGZ|D Chain D, Crystal Structure Of S.Cerevisiae Ist1 N-Terminal Domain
           In Complex With Did2 Mim Motif
          Length = 193

 Score = 68.6 bits (166), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 46/176 (26%), Positives = 91/176 (51%), Gaps = 10/176 (5%)

Query: 10  KCKTSLKLASSRIKLLKNKRGAQVKQLKRELAQLLESGQDQTARIRVEHVVREENTMAAY 69
           K KT LK+   R++  + K+ A  KQ +R++AQLL + ++Q A  RVE ++ ++  +   
Sbjct: 11  KLKTCLKMCIQRLRYAQEKQQAIAKQSRRQVAQLLLTNKEQKAHYRVETLIHDDIHIELL 70

Query: 70  DLLEIYCELIVTRLPIVES--------QKNCPIDLKEAICSVIFASPRCADIPELMDVRK 121
           ++LE+YCEL++ R+ ++          +++    + EAI S+I+A     ++ EL  ++ 
Sbjct: 71  EILELYCELLLARVQVINDISTEEQLVKEHMDDGINEAIRSLIYAILFVDEVKELSQLKD 130

Query: 122 MFTSKYGKDFVSAAAELRPDCGVSRLLVEKLSVKAPDGPTKIKILTAIAEEHNIKW 177
           +   K   +FV+       D  V   +++K S   P        L  IA+ +++ +
Sbjct: 131 LMAWKINVEFVNGVIADHID--VPEKIIKKCSPSVPKEELVDLYLKEIAKTYDVPY 184


>pdb|4DOZ|A Chain A, Crystal Structure Of Pyrococcus Furiosus Cmr2 (Cas10)
          Length = 686

 Score = 30.4 bits (67), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 15/31 (48%), Positives = 19/31 (61%)

Query: 120 RKMFTSKYGKDFVSAAAELRPDCGVSRLLVE 150
           RK+F  KYGKD VS A E+  D     +LV+
Sbjct: 322 RKIFDEKYGKDLVSKAREVSEDFVKDNMLVD 352


>pdb|3UNG|C Chain C, Structure Of The Cmr2 Subunit Of The Crispr Rna Silencing
           Complex
 pdb|3UR3|C Chain C, Structure Of The Cmr2 Subunit Of The Crispr Rna Silencing
           Complex
          Length = 693

 Score = 30.4 bits (67), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 15/31 (48%), Positives = 19/31 (61%)

Query: 120 RKMFTSKYGKDFVSAAAELRPDCGVSRLLVE 150
           RK+F  KYGKD VS A E+  D     +LV+
Sbjct: 337 RKIFDEKYGKDLVSKAREVSEDFVKDNMLVD 367


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.307    0.123    0.345 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,665,328
Number of Sequences: 62578
Number of extensions: 1237790
Number of successful extensions: 2037
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 2026
Number of HSP's gapped (non-prelim): 10
length of query: 1075
length of database: 14,973,337
effective HSP length: 109
effective length of query: 966
effective length of database: 8,152,335
effective search space: 7875155610
effective search space used: 7875155610
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 57 (26.6 bits)