Query 001452
Match_columns 1075
No_of_seqs 258 out of 775
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 01:10:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001452.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001452hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1984 Vesicle coat complex C 100.0 5E-193 1E-197 1670.5 88.8 717 355-1075 236-961 (1007)
2 KOG1985 Vesicle coat complex C 100.0 6E-158 1E-162 1376.1 66.8 663 400-1071 165-839 (887)
3 PTZ00395 Sec24-related protein 100.0 1E-148 3E-153 1344.6 73.7 698 356-1074 599-1512(1560)
4 COG5028 Vesicle coat complex C 100.0 5E-146 1E-150 1266.4 59.3 668 386-1069 132-810 (861)
5 PLN00162 transport protein sec 100.0 8E-116 2E-120 1076.8 61.8 589 404-1030 8-669 (761)
6 KOG1986 Vesicle coat complex C 100.0 4.9E-80 1.1E-84 713.3 49.9 589 403-1029 7-651 (745)
7 COG5047 SEC23 Vesicle coat com 100.0 1.9E-71 4.1E-76 626.5 38.0 588 402-1027 6-660 (755)
8 cd01479 Sec24-like Sec24-like: 100.0 1E-53 2.2E-58 464.9 25.4 241 531-775 1-244 (244)
9 cd01468 trunk_domain trunk dom 100.0 7.8E-50 1.7E-54 433.3 25.5 235 531-769 1-239 (239)
10 PF04811 Sec23_trunk: Sec23/Se 100.0 1.4E-49 3E-54 432.1 20.0 237 531-771 1-243 (243)
11 cd01478 Sec23-like Sec23-like: 100.0 4E-43 8.7E-48 385.9 19.3 227 531-768 1-266 (267)
12 PF04815 Sec23_helical: Sec23/ 99.9 1.8E-21 3.9E-26 185.4 9.9 102 872-973 1-103 (103)
13 PF08033 Sec23_BS: Sec23/Sec24 99.8 2.3E-20 5E-25 175.6 9.2 85 776-860 1-96 (96)
14 PF04810 zf-Sec23_Sec24: Sec23 99.5 6.7E-15 1.5E-19 116.7 2.1 40 455-494 1-40 (40)
15 PRK13685 hypothetical protein; 98.7 1.6E-07 3.4E-12 107.4 16.1 173 534-770 89-289 (326)
16 cd01453 vWA_transcription_fact 98.6 8E-07 1.7E-11 93.5 16.0 163 535-769 5-177 (183)
17 cd01467 vWA_BatA_type VWA BatA 98.6 8.8E-07 1.9E-11 91.6 14.3 155 535-753 4-176 (180)
18 cd01451 vWA_Magnesium_chelatas 98.5 2.1E-06 4.5E-11 89.5 15.2 159 535-755 2-168 (178)
19 cd01466 vWA_C3HC4_type VWA C3H 98.5 1.9E-06 4.1E-11 87.9 13.0 147 536-751 3-154 (155)
20 cd01456 vWA_ywmD_type VWA ywmD 98.4 2.6E-06 5.7E-11 90.7 14.1 174 529-748 16-196 (206)
21 TIGR00868 hCaCC calcium-activa 98.4 9.4E-06 2E-10 102.1 20.9 167 533-770 304-476 (863)
22 cd01465 vWA_subgroup VWA subgr 98.4 5.5E-06 1.2E-10 84.5 15.8 156 535-753 2-162 (170)
23 cd01463 vWA_VGCC_like VWA Volt 98.4 6E-06 1.3E-10 86.9 16.3 165 531-753 11-188 (190)
24 PF13519 VWA_2: von Willebrand 98.4 4.1E-06 9E-11 84.5 13.6 151 536-752 2-159 (172)
25 TIGR03436 acidobact_VWFA VWFA- 98.3 3.3E-05 7.2E-10 86.9 18.6 174 532-771 52-254 (296)
26 cd01474 vWA_ATR ATR (Anthrax T 98.2 3.2E-05 6.9E-10 81.1 16.2 169 534-771 5-181 (185)
27 cd01472 vWA_collagen von Wille 98.2 3E-05 6.5E-10 79.4 15.3 151 536-753 3-163 (164)
28 TIGR03788 marine_srt_targ mari 98.2 0.00022 4.8E-09 88.2 25.2 287 530-915 268-559 (596)
29 cd01461 vWA_interalpha_trypsin 98.2 6E-05 1.3E-09 76.9 16.8 157 533-753 2-161 (171)
30 cd01470 vWA_complement_factors 98.1 4.8E-05 1E-09 80.5 14.6 167 536-754 3-190 (198)
31 cd01450 vWFA_subfamily_ECM Von 98.0 0.00012 2.5E-09 73.4 13.4 145 536-744 3-155 (161)
32 cd01452 VWA_26S_proteasome_sub 98.0 0.00013 2.7E-09 77.4 14.1 142 535-743 5-160 (187)
33 cd01475 vWA_Matrilin VWA_Matri 97.9 0.00015 3.2E-09 78.6 14.8 168 535-772 4-184 (224)
34 PTZ00441 sporozoite surface pr 97.9 0.00027 5.8E-09 85.3 17.7 197 534-792 43-260 (576)
35 cd01480 vWA_collagen_alpha_1-V 97.9 0.00015 3.2E-09 76.3 13.9 158 535-755 4-173 (186)
36 PF13768 VWA_3: von Willebrand 97.9 0.00013 2.8E-09 73.9 13.1 150 536-750 3-155 (155)
37 cd01471 vWA_micronemal_protein 97.9 0.00024 5.2E-09 74.2 15.0 149 536-743 3-160 (186)
38 TIGR02031 BchD-ChlD magnesium 97.8 0.00031 6.8E-09 86.6 16.3 174 532-755 406-584 (589)
39 TIGR02442 Cob-chelat-sub cobal 97.8 0.00019 4.2E-09 89.2 13.6 159 533-751 465-632 (633)
40 PF00092 VWA: von Willebrand f 97.8 0.00036 7.7E-09 71.2 13.4 156 536-755 2-169 (178)
41 PRK13406 bchD magnesium chelat 97.8 0.00063 1.4E-08 83.6 17.4 174 532-767 400-579 (584)
42 cd01469 vWA_integrins_alpha_su 97.7 0.00081 1.7E-08 70.2 15.7 156 536-755 3-172 (177)
43 cd01482 vWA_collagen_alphaI-XI 97.7 0.00059 1.3E-08 70.1 14.5 151 536-753 3-163 (164)
44 cd00198 vWFA Von Willebrand fa 97.7 0.00064 1.4E-08 66.8 14.1 148 535-744 2-155 (161)
45 cd01477 vWA_F09G8-8_type VWA F 97.7 0.00073 1.6E-08 72.0 14.8 148 535-744 21-185 (193)
46 smart00327 VWA von Willebrand 97.7 0.0011 2.3E-08 67.3 15.4 153 535-750 3-164 (177)
47 PHA03247 large tegument protei 97.6 0.48 1E-05 65.2 41.1 13 552-564 3114-3126(3151)
48 cd01473 vWA_CTRP CTRP for CS 97.6 0.0029 6.3E-08 67.3 17.0 150 536-743 3-161 (192)
49 COG1240 ChlD Mg-chelatase subu 97.6 0.00081 1.8E-08 73.6 12.7 164 533-755 78-248 (261)
50 PHA03247 large tegument protei 97.5 0.17 3.8E-06 69.2 35.7 18 551-568 3110-3127(3151)
51 PF00626 Gelsolin: Gelsolin re 97.4 6.4E-05 1.4E-09 67.1 2.0 49 992-1042 4-52 (76)
52 cd01481 vWA_collagen_alpha3-VI 97.4 0.0027 5.9E-08 65.8 14.2 152 536-754 3-165 (165)
53 cd01458 vWA_ku Ku70/Ku80 N-ter 97.4 0.0055 1.2E-07 66.2 16.6 154 535-730 3-173 (218)
54 cd01476 VWA_integrin_invertebr 97.4 0.0054 1.2E-07 62.5 15.3 103 536-672 3-115 (163)
55 cd01464 vWA_subfamily VWA subf 97.2 0.0017 3.6E-08 67.6 10.0 138 536-742 6-159 (176)
56 cd01454 vWA_norD_type norD typ 97.1 0.0079 1.7E-07 62.3 13.1 150 535-731 2-154 (174)
57 PF04056 Ssl1: Ssl1-like; Int 97.1 0.0052 1.1E-07 65.5 11.7 164 539-771 1-173 (193)
58 KOG1924 RhoA GTPase effector D 96.7 0.0068 1.5E-07 73.9 10.1 12 935-946 1046-1057(1102)
59 COG4245 TerY Uncharacterized p 96.3 0.052 1.1E-06 57.1 12.6 156 536-769 6-179 (207)
60 KOG2884 26S proteasome regulat 96.2 0.085 1.8E-06 56.5 13.2 155 535-753 5-175 (259)
61 cd01462 VWA_YIEM_type VWA YIEM 96.1 0.13 2.8E-06 51.9 14.1 130 536-730 3-135 (152)
62 TIGR00578 ku70 ATP-dependent D 95.8 0.15 3.3E-06 63.2 15.5 155 535-728 12-182 (584)
63 smart00262 GEL Gelsolin homolo 95.7 0.015 3.2E-07 53.9 4.8 35 996-1030 16-50 (90)
64 KOG1924 RhoA GTPase effector D 95.4 0.092 2E-06 64.6 10.9 8 761-768 976-983 (1102)
65 cd01457 vWA_ORF176_type VWA OR 95.0 0.19 4.1E-06 53.5 11.0 102 535-673 4-120 (199)
66 cd01460 vWA_midasin VWA_Midasi 93.9 1 2.3E-05 50.6 14.2 133 532-730 59-205 (266)
67 KOG1984 Vesicle coat complex C 93.8 6.7 0.00014 49.9 21.6 57 1-62 1-57 (1007)
68 KOG0443 Actin regulatory prote 93.7 0.069 1.5E-06 66.2 4.9 62 970-1034 615-676 (827)
69 PF03731 Ku_N: Ku70/Ku80 N-ter 93.5 0.63 1.4E-05 50.3 11.4 154 535-727 1-172 (224)
70 cd01455 vWA_F11C1-5a_type Von 93.3 2 4.4E-05 46.0 14.5 98 620-753 72-174 (191)
71 COG5148 RPN10 26S proteasome r 92.9 1.9 4.1E-05 45.6 12.9 133 534-729 4-146 (243)
72 smart00187 INB Integrin beta s 92.7 24 0.00052 42.2 23.4 267 534-824 100-389 (423)
73 KOG2807 RNA polymerase II tran 92.6 2 4.3E-05 48.8 13.5 148 533-746 60-217 (378)
74 TIGR00627 tfb4 transcription f 92.4 6.2 0.00013 44.8 17.4 95 642-771 117-221 (279)
75 PF03850 Tfb4: Transcription f 91.2 6.3 0.00014 44.7 15.8 91 644-769 116-217 (276)
76 COG2425 Uncharacterized protei 90.6 1.8 4E-05 51.7 11.3 147 536-753 275-425 (437)
77 PF00362 Integrin_beta: Integr 90.2 19 0.0004 43.5 19.4 269 534-824 103-392 (426)
78 KOG0443 Actin regulatory prote 89.0 0.61 1.3E-05 58.2 6.0 60 975-1035 255-315 (827)
79 PF06707 DUF1194: Protein of u 87.4 12 0.00026 40.6 13.8 117 622-775 77-202 (205)
80 PRK10997 yieM hypothetical pro 86.7 1.4 3E-05 53.5 7.0 149 534-753 324-475 (487)
81 KOG3768 DEAD box RNA helicase 81.9 10 0.00023 46.3 11.1 32 534-565 2-38 (888)
82 KOG2353 L-type voltage-depende 81.9 24 0.00052 47.0 15.5 113 518-659 210-322 (1104)
83 KOG2487 RNA polymerase II tran 80.1 22 0.00047 39.9 12.0 54 708-770 185-238 (314)
84 COG4867 Uncharacterized protei 77.9 11 0.00024 44.4 9.4 161 533-752 463-634 (652)
85 PF05762 VWA_CoxE: VWA domain 72.9 27 0.00059 38.1 10.6 102 531-670 54-159 (222)
86 TIGR01053 LSD1 zinc finger dom 71.7 3.5 7.7E-05 31.4 2.4 30 457-490 2-31 (31)
87 PF11265 Med25_VWA: Mediator c 71.6 1E+02 0.0023 34.1 14.5 102 623-750 90-204 (226)
88 KOG0444 Cytoskeletal regulator 71.3 3 6.6E-05 51.3 3.0 45 976-1024 623-667 (1255)
89 COG2888 Predicted Zn-ribbon RN 68.3 2.4 5.1E-05 36.9 0.9 31 447-487 29-59 (61)
90 COG5242 TFB4 RNA polymerase II 68.1 56 0.0012 35.8 11.2 176 533-753 20-214 (296)
91 PF09967 DUF2201: VWA-like dom 66.8 9.9 0.00022 37.9 5.2 93 537-672 2-94 (126)
92 KOG1226 Integrin beta subunit 65.0 2E+02 0.0043 37.0 16.5 303 535-856 134-454 (783)
93 KOG0444 Cytoskeletal regulator 64.7 5.1 0.00011 49.4 3.0 61 972-1035 731-803 (1255)
94 PF10058 DUF2296: Predicted in 63.0 4.8 0.0001 34.6 1.8 33 456-488 22-54 (54)
95 PHA03378 EBNA-3B; Provisional 57.5 2.6E+02 0.0057 35.4 15.4 8 21-28 689-696 (991)
96 PRK00398 rpoP DNA-directed RNA 56.0 8.7 0.00019 31.5 2.1 30 456-489 3-32 (46)
97 PRK14890 putative Zn-ribbon RN 49.3 7.4 0.00016 34.0 0.7 28 450-487 30-57 (59)
98 PRK12860 transcriptional activ 48.8 8.8 0.00019 41.1 1.4 30 453-485 131-161 (189)
99 PRK03954 ribonuclease P protei 48.1 11 0.00024 37.6 1.8 35 457-491 65-106 (121)
100 PF09082 DUF1922: Domain of un 47.5 8.2 0.00018 34.7 0.7 30 456-491 3-32 (68)
101 PRK12722 transcriptional activ 44.4 10 0.00022 40.5 1.1 31 453-486 131-162 (187)
102 PF02318 FYVE_2: FYVE-type zin 42.8 12 0.00026 37.0 1.2 34 456-489 71-105 (118)
103 PF11781 RRN7: RNA polymerase 39.0 21 0.00045 28.2 1.8 28 456-488 8-35 (36)
104 PF13719 zinc_ribbon_5: zinc-r 38.9 16 0.00034 28.8 1.1 33 456-488 2-35 (37)
105 smart00661 RPOL9 RNA polymeras 38.9 20 0.00043 29.7 1.7 32 458-491 2-33 (52)
106 COG1198 PriA Primosomal protei 37.7 95 0.0021 40.0 8.1 33 456-492 444-476 (730)
107 KOG0391 SNF2 family DNA-depend 36.1 1.4E+03 0.03 31.8 19.0 7 44-50 1663-1669(1958)
108 PF08271 TF_Zn_Ribbon: TFIIB z 35.8 39 0.00085 27.3 3.0 27 458-487 2-28 (43)
109 PF09723 Zn-ribbon_8: Zinc rib 35.8 20 0.00043 29.1 1.2 29 457-486 6-34 (42)
110 PF13717 zinc_ribbon_4: zinc-r 35.8 17 0.00037 28.5 0.8 32 456-487 2-34 (36)
111 PRK12380 hydrogenase nickel in 34.7 23 0.00049 34.9 1.7 28 455-488 69-96 (113)
112 PF02905 EBV-NA1: Epstein Barr 34.5 53 0.0011 32.9 4.1 33 552-584 112-145 (146)
113 PF10122 Mu-like_Com: Mu-like 34.2 15 0.00032 31.3 0.2 34 456-491 4-37 (51)
114 KOG0445 Actin regulatory prote 33.5 54 0.0012 41.1 4.8 43 997-1039 362-411 (919)
115 PF09779 Ima1_N: Ima1 N-termin 33.0 28 0.00061 35.1 2.1 33 457-491 1-33 (131)
116 TIGR02605 CxxC_CxxC_SSSS putat 32.8 22 0.00048 29.6 1.1 31 457-488 6-36 (52)
117 KOG3799 Rab3 effector RIM1 and 32.4 23 0.00049 35.8 1.2 32 455-490 88-119 (169)
118 TIGR00100 hypA hydrogenase nic 31.5 28 0.00061 34.3 1.7 27 456-488 70-96 (115)
119 PF10138 vWA-TerF-like: vWA fo 31.4 3.9E+02 0.0085 29.2 10.4 145 535-743 3-155 (200)
120 COG1096 Predicted RNA-binding 31.4 27 0.00058 37.3 1.7 26 456-487 149-174 (188)
121 PF08792 A2L_zn_ribbon: A2L zi 30.8 56 0.0012 25.3 2.9 28 456-488 3-31 (33)
122 PRK03681 hypA hydrogenase nick 28.2 34 0.00074 33.7 1.7 28 455-488 69-97 (114)
123 COG4548 NorD Nitric oxide redu 28.2 2.7E+02 0.0058 34.6 9.2 165 532-751 445-617 (637)
124 cd00350 rubredoxin_like Rubred 28.0 36 0.00078 26.1 1.4 23 458-486 3-25 (33)
125 smart00132 LIM Zinc-binding do 26.2 53 0.0011 24.7 2.1 29 458-486 1-35 (39)
126 cd00730 rubredoxin Rubredoxin; 26.2 29 0.00063 29.4 0.7 29 458-486 3-42 (50)
127 PF12257 DUF3608: Protein of u 25.8 8E+02 0.017 28.2 12.1 64 643-733 202-274 (281)
128 smart00834 CxxC_CXXC_SSSS Puta 25.8 34 0.00074 26.8 1.0 29 457-486 6-34 (41)
129 PF06943 zf-LSD1: LSD1 zinc fi 24.8 69 0.0015 23.5 2.3 24 459-486 1-24 (25)
130 PF12760 Zn_Tnp_IS1595: Transp 24.0 82 0.0018 25.9 3.0 27 457-486 19-45 (46)
131 COG1996 RPC10 DNA-directed RNA 23.9 42 0.00092 28.4 1.2 29 456-488 6-34 (49)
132 TIGR00311 aIF-2beta translatio 23.3 80 0.0017 32.1 3.3 32 456-490 97-130 (133)
133 cd02342 ZZ_UBA_plant Zinc fing 22.9 58 0.0013 26.9 1.8 22 457-485 1-22 (43)
134 smart00401 ZnF_GATA zinc finge 22.8 50 0.0011 28.1 1.5 31 456-486 3-33 (52)
135 KOG1074 Transcriptional repres 22.5 34 0.00075 43.7 0.7 41 453-493 350-396 (958)
136 PRK00564 hypA hydrogenase nick 22.3 35 0.00076 33.8 0.5 28 455-488 70-98 (117)
137 PF07282 OrfB_Zn_ribbon: Putat 22.1 59 0.0013 28.6 1.9 29 456-488 28-56 (69)
138 KOG2893 Zn finger protein [Gen 21.9 8.5E+02 0.019 27.2 10.8 7 70-76 135-141 (341)
139 COG2051 RPS27A Ribosomal prote 21.6 68 0.0015 28.9 2.1 33 456-491 19-51 (67)
140 PF14803 Nudix_N_2: Nudix N-te 21.6 27 0.00059 27.3 -0.3 30 458-487 2-31 (34)
141 KOG2846 Predicted membrane pro 20.8 46 0.001 38.5 1.1 36 456-491 220-255 (328)
142 PF08134 cIII: cIII protein fa 20.7 82 0.0018 25.5 2.1 23 1048-1070 15-37 (44)
143 PF07754 DUF1610: Domain of un 20.4 87 0.0019 22.8 2.0 24 459-486 1-24 (24)
144 PF12773 DZR: Double zinc ribb 20.3 57 0.0012 26.9 1.3 32 455-491 11-42 (50)
No 1
>KOG1984 consensus Vesicle coat complex COPII, subunit SFB3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.5e-193 Score=1670.46 Aligned_cols=717 Identities=53% Similarity=0.917 Sum_probs=693.2
Q ss_pred CCCCCCCCCCCCCCCccCCccccccCC-CCCCCCCCCCCCceeecCCCCCCCCceeeeccccCCCHHHhhhcCCceEEEE
Q 001452 355 PASSKIDPQQIPRPVPSSTVVLYDTRE-GNQANPPPPATSEYIVRDMGNCSPRYMRCTISQIPCTNDLLTTSGMQLALLV 433 (1075)
Q Consensus 355 ~~~~~idp~~iP~P~~~~~~~~~~t~~-~~~~~~PP~~tt~~~~~D~gN~sP~yiR~T~~~iP~t~~ll~~~~LPlgivV 433 (1075)
..++||||++||+|+++...+.+.++. +....+||++||+|++.|||||||||||||+|+||+|.|+++.++||||+||
T Consensus 236 ~~~~rldp~~iPs~~qv~~~d~~~~r~~~~~~~~PPl~TTd~~~~DqGN~sPr~mr~T~Y~iP~T~Dl~~as~iPLalvI 315 (1007)
T KOG1984|consen 236 PPPQRLDPNAIPSPPQVSIEDDSSFRSTDTRAQPPPLVTTDFFIQDQGNCSPRFMRCTMYTIPCTNDLLKASQIPLALVI 315 (1007)
T ss_pred CccccCChhhCCCchhcccchhhhhhcCCccCCCCCCcccceEEeccCCCCcchheeecccCCccHhHHHhcCCcceeEe
Confidence 366899999999999985444444442 3445689999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCCceeccCCCCCCcccCCCCceecCceEEEecCCeEEecCCCCCCCCCcccccCCCCCCCCCCCCCCCCc
Q 001452 434 QPLALPHPSEEPIQIVDFGDMGPVRCSRCKAYINPFMKFIDQGRRFICSLCGFTDETPRDYHCNLGPDGRRRDADDRPEL 513 (1075)
Q Consensus 434 ~Pfa~~~~~e~pvPvvd~g~~~pvRC~rCrAYiNPf~~f~~~G~~W~Cn~C~~~N~vP~~Y~~~ld~~g~R~D~~~RPEL 513 (1075)
+|||.+++.|+++++||+++.+++||+||||||||||+|+++||+|+||||+.+|+++++||++|+++|||+|+++||||
T Consensus 316 qPfa~l~p~E~~~~vVd~g~sgPvRC~RCkaYinPFmqF~~~gr~f~Cn~C~~~n~vp~~yf~~L~~~grr~D~~erpEL 395 (1007)
T KOG1984|consen 316 QPFATLTPNEAPVPVVDLGESGPVRCNRCKAYINPFMQFIDGGRKFICNFCGSKNQVPDDYFNHLGPTGRRVDVEERPEL 395 (1007)
T ss_pred cccccCCcccCCCceecCCCCCCcchhhhhhhcCcceEEecCCceEEecCCCccccCChhhcccCCCcccccccccCchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCccEEEEeccccccC--CCCCcEEEEEEEcchhHHhhhHHHHHHHHHHHHHhcCC-CCCCcEEEEEEeCCeEEEEecCC
Q 001452 514 CRGTVEFVATKEYMVR--DPMPAVFFFLIDVSMNALQTGATAAACSAISQVISDLP-EGPRTMVGIATFDSTIHFYNLKR 590 (1075)
Q Consensus 514 ~~gtVEfvap~eY~~r--~p~pp~yvFvIDvS~~av~sG~l~~v~~aI~~~L~~Lp-~~~rt~VGiITFDs~VhfYnl~~ 590 (1075)
++|+|||+|+++||++ +|++++|||+||||++|+++|++.++|++|+++|+.|+ ++++++|||||||++|||||+++
T Consensus 396 ~~Gt~dfvatk~Y~~~~k~p~ppafvFmIDVSy~Ai~~G~~~a~ce~ik~~l~~lp~~~p~~~Vgivtfd~tvhFfnl~s 475 (1007)
T KOG1984|consen 396 CLGTVDFVATKDYCRKTKPPKPPAFVFMIDVSYNAISNGAVKAACEAIKSVLEDLPREEPNIRVGIVTFDKTVHFFNLSS 475 (1007)
T ss_pred cccccceeeehhhhhcCCCCCCceEEEEEEeehhhhhcchHHHHHHHHHHHHhhcCccCCceEEEEEEecceeEeeccCc
Confidence 9999999999999998 89999999999999999999999999999999999999 58899999999999999999999
Q ss_pred CCCCceEeecCCccccccCCcccceeehHHhHHHHHHHHhhcCccccCCCCccchHHHHHHHHHHHHHhc-CCEEEEEec
Q 001452 591 ALQQPLMLIVPDVEDVYTPLQSDIIVPVSECRQHLELLLESIPSMFQNNRTAESAFGAAVKAAFLALKST-GGKLLVFQS 669 (1075)
Q Consensus 591 ~l~qpqmlVvsDldd~FvPl~~~lLv~l~esr~~I~~lLd~Lp~~f~~~~~~~~~lG~AL~aA~~lL~~~-GGkIivF~s 669 (1075)
+++|++|+||+|++|+|+|+.++|||+..|++.+|+.|||+|+.||.+.+.+++|+|+||+||.++||.. ||||+||++
T Consensus 476 ~L~qp~mliVsdv~dvfvPf~~g~~V~~~es~~~i~~lLd~Ip~mf~~sk~pes~~g~alqaa~lalk~~~gGKl~vF~s 555 (1007)
T KOG1984|consen 476 NLAQPQMLIVSDVDDVFVPFLDGLFVNPNESRKVIELLLDSIPTMFQDSKIPESVFGSALQAAKLALKAADGGKLFVFHS 555 (1007)
T ss_pred cccCceEEEeecccccccccccCeeccchHHHHHHHHHHHHhhhhhccCCCCchhHHHHHHHHHHHHhccCCceEEEEec
Confidence 9999999999999999999999999999999999999999999999999999999999999999999987 999999999
Q ss_pred CCCCcCcc-cccccccccCCCCCCCccccccccchhHHHHHHHHHHHHhcCcEEEEEEecCCccCccccccccccccceE
Q 001452 670 VLPSVGIG-ALSAREAEGRSNISSGEKETHKLLQPADKTLKAMAIEFAEYQVCVDVFITTQTYVDIASISVIPKTTGGQV 748 (1075)
Q Consensus 670 g~Pt~GpG-~L~~re~~~r~~~~~gt~ke~~ll~pa~~FYk~LA~~~~~~gIsVDlFl~s~~~~DlatL~~La~~TGG~v 748 (1075)
.+||+|.| +|+.|+|.+ +++|+|||+|+.+++++|++||++|++.|||||||++++.|+|+|+|+.+++.|||+|
T Consensus 556 ~Lpt~g~g~kl~~r~D~~----l~~t~kek~l~~pq~~~y~~LA~e~v~~g~svDlF~t~~ayvDvAtlg~v~~~TgG~v 631 (1007)
T KOG1984|consen 556 VLPTAGAGGKLSNRDDRR----LIGTDKEKNLLQPQDKTYTTLAKEFVESGCSVDLFLTPNAYVDVATLGVVPALTGGQV 631 (1007)
T ss_pred ccccccCcccccccchhh----hhcccchhhccCcchhHHHHHHHHHHHhCceEEEEEcccceeeeeeecccccccCcee
Confidence 99999987 999998866 8999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCcccchHHHHHHHHHhccCCccccceEEEEeCCCceEEeeeCCcccCCCCceeecCCCCCCeEEEEEEecCCCC
Q 001452 749 YYYYPFSALSDPAKLYNDLRWNITRPQGFEAVMRVRCSQGIQVQEYHGNFCKRIPTDIDLPAIDCNKAIMVTLKHDDKLQ 828 (1075)
Q Consensus 749 ~~Y~~F~~~~d~~kL~~dL~r~Ltr~~g~~a~mrVR~S~GL~V~~~~Gnf~~rs~~~~~lp~id~dtSi~~el~~d~~L~ 828 (1075)
|+|.+|..++|..+|.+||+|++++++||+|+||||||+||++.+|||||++++++|++|+.+|+||+++++|+||++|+
T Consensus 632 y~Y~~F~a~~D~~rl~nDL~~~vtk~~gf~a~mrvRtStGirv~~f~Gnf~~~~~tDiela~lD~dkt~~v~fkhDdkLq 711 (1007)
T KOG1984|consen 632 YKYYPFQALTDGPRLLNDLVRNVTKKQGFDAVMRVRTSTGIRVQDFYGNFLMRNPTDIELAALDCDKTLTVEFKHDDKLQ 711 (1007)
T ss_pred EEecchhhcccHHHHHHHHHHhcccceeeeeEEEEeecCceeeeeeechhhhcCCCCccccccccCceeEEEEecccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceEEEEEEEEEecCCcEEEEEEecccCCCCCHHHHHhhcchhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Q 001452 829 DGSECAFQCALLYTTVYGQRRIRVTTLSLPCTSNLSNLYRSADLDTQFTCFMKQAASEIPSTPLANVREQMMNLCVNALV 908 (1075)
Q Consensus 829 ~~~~~~fQ~AlLYTt~~GeRrIRV~Tl~lpVts~l~~vf~~aD~dai~~~laK~a~~~~l~~~l~d~R~~L~~~lv~iL~ 908 (1075)
++.+++||+|||||+.+|+|||||||++++||++++|+||++|.|+++++|+|.|+..+.++.++++|+.|+++|++||+
T Consensus 712 ~~s~~~fQ~AlLYTti~G~RR~Rv~Nlsl~~ts~l~~lyr~~~~d~l~a~maK~a~~~i~~~~lk~vre~l~~~~~~iL~ 791 (1007)
T KOG1984|consen 712 DGSDVHFQTALLYTTIDGQRRLRVLNLSLAVTSQLSELYRSADTDPLIAIMAKQAAKAILDKPLKEVREQLVSQCAQILA 791 (1007)
T ss_pred CCcceeEEEEEEEeccCCceeEEEEecchhhhhhHHHHHHhcCccHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcccCCCCCcccchhhcchHHHHHHHhhcccCCC-CCCCchHHHHHHHHHcCCChhhhcccccceEEEeccCCCCC
Q 001452 909 SYRKFCATVSSSGQLILPEALKLLPLYTLALIKSTGLR-TDGRIDDRSFWITYVSSVSIPFAVPFVYPRMVAIHDLDKGE 987 (1075)
Q Consensus 909 ~YRk~ca~~~s~gqLiLPesLklLPlyil~LlKS~~Lr-~~~s~DeR~~~~~~l~s~~v~~~~~~lYPrL~~lh~l~~~d 987 (1075)
+|||+|++..+++||||||+||+||+|++||+||.+|+ .+++.|+|+|++.++.++++++++.+|||||++||+++.+|
T Consensus 792 ~YRk~cas~~ssgQLILPeslKLlPly~la~lKs~~l~~~~~~~DdRi~~~~~v~sl~v~~~~~~~YPrl~p~hdl~i~d 871 (1007)
T KOG1984|consen 792 SYRKNCASPASSGQLILPESLKLLPLYMLALLKSSALRPQEIRTDDRIYQLQLVTSLSVEQLMPFFYPRLLPFHDLDIED 871 (1007)
T ss_pred HHHHhhcCCCCcccEechhhhHHHHHHHHHHHHhhcccccccccchhHHHHHHhhcccHHhhhhhhccceeeeecccccc
Confidence 99999999999999999999999999999999999999 89999999999999999999999999999999999997663
Q ss_pred -CCCCCCCcccCccccccCCcEEEEEcCCeEEEEeCCCCCHHHHHHhhCCCCCCCCCC-ccccCCCCCHHHHHHHHHHHH
Q 001452 988 -DGSIIPPFLPLSSEHVSDEGIYLLENGEDALIYIGSSVDSSILHQLFGISSVDEVPT-QFVLQQYDNPLSKKLNDVVNE 1065 (1075)
Q Consensus 988 -~~~~lP~~l~LS~e~L~~~GiYLLD~G~~i~LwvG~~v~p~ll~~lFGv~s~~~l~~-~~~lp~~d~~~s~~l~~iI~~ 1065 (1075)
.+..+|..+|+|+|+|+++||||||||+++|||||++|+++|+|+||+|++.++++. ..+||++||.+|+++|++|+.
T Consensus 872 tl~~~~p~~VraS~e~l~negiYll~nG~~~ylwvg~sv~~~llQ~lf~V~s~~~i~s~~~~Lpe~dn~lS~k~r~~i~~ 951 (1007)
T KOG1984|consen 872 TLEFVLPKAVRASSEFLSNEGIYLLDNGQKIYLWVGESVDPDLLQDLFSVSSFEQIDSQSGVLPELDNPLSRKVRNVISL 951 (1007)
T ss_pred ccccccccceecchhhccCCceEEEecCcEEEEEecCCCCHHHHHHHhcCccccccccccccccccCcHHHHHHHHHHHH
Confidence 345789999999999999999999999999999999999999999999999999994 478999999999999999999
Q ss_pred HHHhccCCCC
Q 001452 1066 IRRQRCSYLR 1075 (1075)
Q Consensus 1066 lr~~r~~~~~ 1075 (1075)
||+.|.++|+
T Consensus 952 i~~~r~~~l~ 961 (1007)
T KOG1984|consen 952 IRRQRSSELP 961 (1007)
T ss_pred HHhccccccc
Confidence 9999998874
No 2
>KOG1985 consensus Vesicle coat complex COPII, subunit SEC24/subunit SFB2 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.2e-158 Score=1376.10 Aligned_cols=663 Identities=39% Similarity=0.748 Sum_probs=633.7
Q ss_pred CCCCCCCceeeeccccCCCHHHhhhcCCceEEEEccCCCCCCCCCCceeccCCCCCCcccCCCCceecCceEEEecCCeE
Q 001452 400 MGNCSPRYMRCTISQIPCTNDLLTTSGMQLALLVQPLALPHPSEEPIQIVDFGDMGPVRCSRCKAYINPFMKFIDQGRRF 479 (1075)
Q Consensus 400 ~gN~sP~yiR~T~~~iP~t~~ll~~~~LPlgivV~Pfa~~~~~e~pvPvvd~g~~~pvRC~rCrAYiNPf~~f~~~G~~W 479 (1075)
.-||+|+|+|||+++||.+++|++++|||||++|+||+++. ++++++++. ...|+||++||+||||||.|++.||+|
T Consensus 165 ~~nc~p~y~RsTl~~iP~t~sLl~kskLPlglvv~Pf~~~~-d~~~~p~~~--~~~IvRCr~CRtYiNPFV~fid~gr~W 241 (887)
T KOG1985|consen 165 SSNCSPSYVRSTLSAIPQTQSLLKKSKLPLGLVVHPFAHLD-DIDPLPVIT--STLIVRCRRCRTYINPFVEFIDQGRRW 241 (887)
T ss_pred ccCCCHHHHHHHHHhCCccHHHHHhcCCCceEEEeeccccc-ccCCCCccc--CCceeeehhhhhhcCCeEEecCCCcee
Confidence 34999999999999999999999999999999999999887 455577664 678999999999999999999999999
Q ss_pred EecCCCCCCCCCcccccCCCCCCCCCCCCCCCCccCccEEEEeccccccCCCCCcEEEEEEEcchhHHhhhHHHHHHHHH
Q 001452 480 ICSLCGFTDETPRDYHCNLGPDGRRRDADDRPELCRGTVEFVATKEYMVRDPMPAVFFFLIDVSMNALQTGATAAACSAI 559 (1075)
Q Consensus 480 ~Cn~C~~~N~vP~~Y~~~ld~~g~R~D~~~RPEL~~gtVEfvap~eY~~r~p~pp~yvFvIDvS~~av~sG~l~~v~~aI 559 (1075)
+||+|+..|+||.+|+.+. -.+.+.|.++||||++.+|||+||.|||+|+|+|++||||||||.+|+++|+|+++|++|
T Consensus 242 rCNlC~~~NdvP~~f~~~~-~t~~~~~~~~RpEl~~s~vE~iAP~eYmlR~P~Pavy~FliDVS~~a~ksG~L~~~~~sl 320 (887)
T KOG1985|consen 242 RCNLCGRVNDVPDDFDWDP-LTGAYGDPYSRPELTSSVVEFIAPSEYMLRPPQPAVYVFLIDVSISAIKSGYLETVARSL 320 (887)
T ss_pred eechhhhhcCCcHHhhcCc-cccccCCcccCccccceeEEEecCcccccCCCCCceEEEEEEeehHhhhhhHHHHHHHHH
Confidence 9999999999999998874 346778999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCCcEEEEEEeCCeEEEEecCCCCCCceEeecCCccccccCCcccceeehHHhHHHHHHHHhhcCccccCC
Q 001452 560 SQVISDLPEGPRTMVGIATFDSTIHFYNLKRALQQPLMLIVPDVEDVYTPLQSDIIVPVSECRQHLELLLESIPSMFQNN 639 (1075)
Q Consensus 560 ~~~L~~Lp~~~rt~VGiITFDs~VhfYnl~~~l~qpqmlVvsDldd~FvPl~~~lLv~l~esr~~I~~lLd~Lp~~f~~~ 639 (1075)
++.||.|+.++|+||||||||++||||+++.++++++|++|+|+||+|+|.+++|||+++|||+.|+.+|+.|++||.++
T Consensus 321 L~~LD~lpgd~Rt~igfi~fDs~ihfy~~~~~~~qp~mm~vsdl~d~flp~pd~lLv~L~~ck~~i~~lL~~lp~~F~~~ 400 (887)
T KOG1985|consen 321 LENLDALPGDPRTRIGFITFDSTIHFYSVQGDLNQPQMMIVSDLDDPFLPMPDSLLVPLKECKDLIETLLKTLPEMFQDT 400 (887)
T ss_pred HHhhhcCCCCCcceEEEEEeeceeeEEecCCCcCCCceeeeccccccccCCchhheeeHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccchHHHHHHHHHHHHHhcCCEEEEEecCCCCcCcccccccccccCCCCCCCccccccccchhHHHHHHHHHHHHhcC
Q 001452 640 RTAESAFGAAVKAAFLALKSTGGKLLVFQSVLPSVGIGALSAREAEGRSNISSGEKETHKLLQPADKTLKAMAIEFAEYQ 719 (1075)
Q Consensus 640 ~~~~~~lG~AL~aA~~lL~~~GGkIivF~sg~Pt~GpG~L~~re~~~r~~~~~gt~ke~~ll~pa~~FYk~LA~~~~~~g 719 (1075)
+.+++|+|+||++|+++|+.+||||++|++++||+|.|+|+.||+.+ ..++|++..++.+++.|||+||.+|++.|
T Consensus 401 ~~t~~alGpALkaaf~li~~~GGri~vf~s~lPnlG~G~L~~rEdp~----~~~s~~~~qlL~~~t~FYK~~a~~cs~~q 476 (887)
T KOG1985|consen 401 RSTGSALGPALKAAFNLIGSTGGRISVFQSTLPNLGAGKLKPREDPN----VRSSDEDSQLLSPATDFYKDLALECSKSQ 476 (887)
T ss_pred cCcccccCHHHHHHHHHHhhcCCeEEEEeccCCCCCccccccccccc----cccchhhhhccCCCchHHHHHHHHhccCc
Confidence 99999999999999999999999999999999999999999998766 67789999999999999999999999999
Q ss_pred cEEEEEEecCCccCccccccccccccceEEEEcCCCcc--cchHHHHHHHHHhccCCccccceEEEEeCCCceEEeeeCC
Q 001452 720 VCVDVFITTQTYVDIASISVIPKTTGGQVYYYYPFSAL--SDPAKLYNDLRWNITRPQGFEAVMRVRCSQGIQVQEYHGN 797 (1075)
Q Consensus 720 IsVDlFl~s~~~~DlatL~~La~~TGG~v~~Y~~F~~~--~d~~kL~~dL~r~Ltr~~g~~a~mrVR~S~GL~V~~~~Gn 797 (1075)
||||+|+++.+|.|||||+.|+++|||++|||++|+.. .|.+||.+||.|+|+|++||||+||||||+||+++.||||
T Consensus 477 I~VDlFl~s~qY~DlAsLs~LskySgG~~y~YP~f~~s~p~~~~Kf~~el~r~Ltr~~~feaVmRiR~S~gl~~~~f~Gn 556 (887)
T KOG1985|consen 477 ICVDLFLFSEQYTDLASLSCLSKYSGGQVYYYPSFDGSNPHDVLKFARELARYLTRKIGFEAVMRIRCSTGLRMSSFFGN 556 (887)
T ss_pred eEEEEEeecccccchhhhhccccccCceeEEccCCCCCCHHHHHHHHHHHHHHhhhhhhhheeEEeeccccccccceecc
Confidence 99999999999999999999999999999999999987 5788999999999999999999999999999999999999
Q ss_pred cccCCCCceeecCCCCCCeEEEEEEecCCCCCCCceEEEEEEEEEecCCcEEEEEEecccCCCCCHHHHHhhcchhHHHH
Q 001452 798 FCKRIPTDIDLPAIDCNKAIMVTLKHDDKLQDGSECAFQCALLYTTVYGQRRIRVTTLSLPCTSNLSNLYRSADLDTQFT 877 (1075)
Q Consensus 798 f~~rs~~~~~lp~id~dtSi~~el~~d~~L~~~~~~~fQ~AlLYTt~~GeRrIRV~Tl~lpVts~l~~vf~~aD~dai~~ 877 (1075)
|+.|++|++.++++++|++++|++++|+++.+ ..++||+|+|||..+|||||||||+++++++++.|||+++|++||+.
T Consensus 557 FF~RStDLla~~~v~~D~sy~~qisiEesl~~-~~~~fQvAlLyT~~~GERRIRV~T~~lpt~~sl~evY~saD~~AI~~ 635 (887)
T KOG1985|consen 557 FFVRSTDLLALPNVNPDQSYAFQISIEESLTT-GFCVFQVALLYTLSKGERRIRVHTLCLPTVSSLNEVYASADQEAIAS 635 (887)
T ss_pred cccCcHHHhcccCCCCCccceEEEEeehhcCC-ceeEEEeeeeecccCCceeEEEEEeeccccccHHHHHhhcCHHHHHH
Confidence 99999999999999999999999999999864 56779999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhhccc-CCCCCcccchhhcchHHHHHHHhhcccCCC--CCCCchHH
Q 001452 878 CFMKQAASEIPSTPLANVREQMMNLCVNALVSYRKFCAT-VSSSGQLILPEALKLLPLYTLALIKSTGLR--TDGRIDDR 954 (1075)
Q Consensus 878 ~laK~a~~~~l~~~l~d~R~~L~~~lv~iL~~YRk~ca~-~~s~gqLiLPesLklLPlyil~LlKS~~Lr--~~~s~DeR 954 (1075)
+|+|+|+++.++.++.|+|+.|+++++++|.+|||..+. +.....|.+|.+|++||+|+++|+|+++|| ..++.|+|
T Consensus 636 lla~~Av~ksl~ssL~dardal~~~~~D~l~aYk~~~~~~~~~~~~l~~p~~LrllPllvlALlK~~~fr~g~~~~lD~R 715 (887)
T KOG1985|consen 636 LLAKKAVEKSLSSSLSDARDALTNAVVDILNAYKKLVSNQNGQGITLSLPASLRLLPLLVLALLKHPAFRPGTGTRLDYR 715 (887)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhcccccCCcceecCcchhhhHHHHHHHhcCCcccCCCCCCchHH
Confidence 999999999999999999999999999999999996654 345567999999999999999999999999 57999999
Q ss_pred HHHHHHHcCCChhhhcccccceEEEeccCCCC------CCCCCCCCcccCccccccCCcEEEEEcCCeEEEEeCCCCCHH
Q 001452 955 SFWITYVSSVSIPFAVPFVYPRMVAIHDLDKG------EDGSIIPPFLPLSSEHVSDEGIYLLENGEDALIYIGSSVDSS 1028 (1075)
Q Consensus 955 ~~~~~~l~s~~v~~~~~~lYPrL~~lh~l~~~------d~~~~lP~~l~LS~e~L~~~GiYLLD~G~~i~LwvG~~v~p~ 1028 (1075)
++++++++++++..++++|||.||++|+++.+ |+.+.+|+.|+|+.+.|++.|+||||+|..+|||||++++++
T Consensus 716 ~~a~~~~~~lpl~~L~k~IYP~Lysl~~l~~ea~~~~~d~~~~~p~~L~ltae~l~~~GlyL~D~g~~lfl~vg~~a~P~ 795 (887)
T KOG1985|consen 716 AYAMCLMSTLPLKYLMKYIYPTLYSLHDLDDEAGLPIHDQTVVLPPPLNLTAELLSRRGLYLMDTGTTLFLWVGSNADPS 795 (887)
T ss_pred HHHHHHhhcCCHHHHHhhhcccceeccccccccCcccccccccCCCccchHHHHhccCceEEEecCcEEEEEEcCCCCcc
Confidence 99999999999999999999999999999764 556778999999999999999999999999999999999999
Q ss_pred HHHHhhCCCCCCCCC-CccccCCCCCHHHHHHHHHHHHHHHhcc
Q 001452 1029 ILHQLFGISSVDEVP-TQFVLQQYDNPLSKKLNDVVNEIRRQRC 1071 (1075)
Q Consensus 1029 ll~~lFGv~s~~~l~-~~~~lp~~d~~~s~~l~~iI~~lr~~r~ 1071 (1075)
++.++||++.+.+++ .+..|+++||+.+++|++||++||..|-
T Consensus 796 ll~~vfg~~~~adi~~~~~~lp~~~n~~s~r~~~fI~~lR~d~~ 839 (887)
T KOG1985|consen 796 LLFDVFGVSTLADIPIGKYTLPELDNEESDRVRRFIKKLRDDRT 839 (887)
T ss_pred ccccccCcchHhhcccccccCcccccchhHHHHHHHHHhhcCCc
Confidence 999999999999998 7889999999999999999999997664
No 3
>PTZ00395 Sec24-related protein; Provisional
Probab=100.00 E-value=1.3e-148 Score=1344.60 Aligned_cols=698 Identities=25% Similarity=0.455 Sum_probs=629.4
Q ss_pred CCCCCCCCCCCCCCccCC-------ccccccCCCCCCCCCCCCCCceeecCCCCCCCCceeeeccccCCCHHHhhhcCCc
Q 001452 356 ASSKIDPQQIPRPVPSST-------VVLYDTREGNQANPPPPATSEYIVRDMGNCSPRYMRCTISQIPCTNDLLTTSGMQ 428 (1075)
Q Consensus 356 ~~~~idp~~iP~P~~~~~-------~~~~~t~~~~~~~~PP~~tt~~~~~D~gN~sP~yiR~T~~~iP~t~~ll~~~~LP 428 (1075)
...|||+++|||||++.+ ..+|+|++.- .||+.+++|+++|+|||+|+|||+|||+||.+.++++.++||
T Consensus 599 ~~~ri~~~~ip~p~~~~~~~~~~~~~~~~~t~k~~---~pp~~~~~~~~~dtgn~dP~~~r~tmY~iP~~~~~~~~~~iP 675 (1560)
T PTZ00395 599 TINRIDMNKIPRPIINTQEKKKKKNLKVFETCKYI---SPPSYYQPYISIDTGKADPRFLKSTLYQIPLFSETLKLSQIP 675 (1560)
T ss_pred cccccCcccCCCcccccccccccccchhhhhccCC---CCCCCCCceEEeecCCCChhhhhhhhhcCcchHHHHHhcCCC
Confidence 346999999999998733 2589998553 479999999999999999999999999999999999999999
Q ss_pred eEEEEccCCCCCCCCCCceeccCC--------CCCCcccCCCCceecCceEEEecCCeEEecCCCCCCCCCcc----cc-
Q 001452 429 LALLVQPLALPHPSEEPIQIVDFG--------DMGPVRCSRCKAYINPFMKFIDQGRRFICSLCGFTDETPRD----YH- 495 (1075)
Q Consensus 429 lgivV~Pfa~~~~~e~pvPvvd~g--------~~~pvRC~rCrAYiNPf~~f~~~G~~W~Cn~C~~~N~vP~~----Y~- 495 (1075)
|||||+|||.+.++|. |+++|.. ..+++||.+|++|+|+++.|+-. ++++||||+..+.+-++ ++
T Consensus 676 ~gi~v~Pfa~~~~~e~-~~~~~~~~~~~d~~~~~~~~rc~~c~~y~~~~~~~~~~-~~~~c~~c~~~~~i~e~~~~~~~~ 753 (1560)
T PTZ00395 676 FGIIVNPFACLNEGEG-IDKIDMKDIINDKEENIEILRCPKCLGYLHATILEDIS-SSVQCVFCDTDFLINENVLFDIFQ 753 (1560)
T ss_pred ceeecchhhhcCCCCC-CcccchhhcccchhhccceeecchhHhhhcchheeccc-ceEEEEecCCcchhhHHHHHHHHH
Confidence 9999999999988775 8888775 24799999999999999999876 78999999999988542 21
Q ss_pred --cCCCCCCCCCCCCCCC----CccCccEEEEecccccc-----------------------------------------
Q 001452 496 --CNLGPDGRRRDADDRP----ELCRGTVEFVATKEYMV----------------------------------------- 528 (1075)
Q Consensus 496 --~~ld~~g~R~D~~~RP----EL~~gtVEfvap~eY~~----------------------------------------- 528 (1075)
..+.+ +-.|.+++- -|.+|+||+++|..|..
T Consensus 754 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 831 (1560)
T PTZ00395 754 YNEKIGH--KESDHNEHGNSLSPLLKGSVDIIIPPIYYHNVNKFKLTYTYLNKNINQTAFMITNKIMSFTKHISNSLVAN 831 (1560)
T ss_pred Hhhhhcc--ccccccccccccchhhcCceeEEccchhhccCCccceeeehhhcchhhhhhhhhhhhhhhhhhhcchheec
Confidence 12211 112332221 47799999999865410
Q ss_pred --------------------------------------------------------------------------------
Q 001452 529 -------------------------------------------------------------------------------- 528 (1075)
Q Consensus 529 -------------------------------------------------------------------------------- 528 (1075)
T Consensus 832 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 911 (1560)
T PTZ00395 832 DSKGGNKATSASAFGDSGDANFLAGGGYTNYGGAGGYNTYDNQSGYNNHDVVNNRGGSGAGNHLYGKDHDVQNFDNVMDN 911 (1560)
T ss_pred ccccccccchhhhcccccccccccccccccccccccccccccccccccccccccccccCcCcccccCcccccchhhhccC
Confidence
Q ss_pred ------------------------------------CCCCCcEEEEEEEcchhHHhhhHHHHHHHHHHHHHhcCCCCCCc
Q 001452 529 ------------------------------------RDPMPAVFFFLIDVSMNALQTGATAAACSAISQVISDLPEGPRT 572 (1075)
Q Consensus 529 ------------------------------------r~p~pp~yvFvIDvS~~av~sG~l~~v~~aI~~~L~~Lp~~~rt 572 (1075)
+.++||+||||||||+.||++|+++++|++|+++|+.|+ ++|+
T Consensus 912 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~PP~YvFLIDVS~~AVkSGLl~tacesIK~sLDsL~-dpRT 990 (1560)
T PTZ00395 912 ANFTIHDMKNLICEKNGEPDSAKIRRNSFLAKYPQVKNMLPPYFVFVVECSYNAIYNNITYTILEGIRYAVQNVK-CPQT 990 (1560)
T ss_pred CceeeecchhhhhcccCCchhhhhhccchhhccccccCCCCCEEEEEEECCHHHHhhChHHHHHHHHHHHHhcCC-CCCc
Confidence 126789999999999999999999999999999999997 5789
Q ss_pred EEEEEEeCCeEEEEecCCC-------------CCCceEeecCCccccccCCc-ccceeehHHhHHHHHHHHhhcCccccC
Q 001452 573 MVGIATFDSTIHFYNLKRA-------------LQQPLMLIVPDVEDVYTPLQ-SDIIVPVSECRQHLELLLESIPSMFQN 638 (1075)
Q Consensus 573 ~VGiITFDs~VhfYnl~~~-------------l~qpqmlVvsDldd~FvPl~-~~lLv~l~esr~~I~~lLd~Lp~~f~~ 638 (1075)
||||||||++||||+|+.+ +.++||+||+||||+|+|++ ++|||++.|+|+.|+.||++|++||..
T Consensus 991 RVGIITFDSsLHFYNLks~l~~~~~~~~~~~~l~qPQMLVVSDLDDPFLPlP~ddLLVnL~ESRevIe~LLDkLPemFt~ 1070 (1560)
T PTZ00395 991 KIAIITFNSSIYFYHCKGGKGVSGEEGDGGGGSGNHQVIVMSDVDDPFLPLPLEDLFFGCVEEIDKINTLIDTIKSVSTT 1070 (1560)
T ss_pred EEEEEEecCcEEEEecCcccccccccccccccCCCceEEeecCCccCcCCCCccCeeechHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999875 47899999999999999998 899999999999999999999999999
Q ss_pred CCCccchHHHHHHHHHHHHHhcC--CEEEEEecCCCCcCcccccccccccCCCCCCCccccccccchhHHHHHHHHHHHH
Q 001452 639 NRTAESAFGAAVKAAFLALKSTG--GKLLVFQSVLPSVGIGALSAREAEGRSNISSGEKETHKLLQPADKTLKAMAIEFA 716 (1075)
Q Consensus 639 ~~~~~~~lG~AL~aA~~lL~~~G--GkIivF~sg~Pt~GpG~L~~re~~~r~~~~~gt~ke~~ll~pa~~FYk~LA~~~~ 716 (1075)
....++|+|+||++|+++|+..| |||++|++++|++|+|+|+.|++ +.+|+.++.++++|||+||.+|+
T Consensus 1071 t~~~esCLGSALqAA~~aLk~~GGGGKIiVF~SSLPniGpGaLK~Re~---------~~KEk~Ll~pqd~FYK~LA~ECs 1141 (1560)
T PTZ00395 1071 MQSYGSCGNSALKIAMDMLKERNGLGSICMFYTTTPNCGIGAIKELKK---------DLQENFLEVKQKIFYDSLLLDLY 1141 (1560)
T ss_pred cCCCcccHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCCCCccccccc---------ccccccccccchHHHHHHHHHHH
Confidence 98999999999999999999986 99999999999999999997653 34677889999999999999999
Q ss_pred hcCcEEEEEEecCCccC--ccccccccccccceEEEEcCCCcccchHHHHHHHHHhccC-CccccceEEEEeCCCceEEe
Q 001452 717 EYQVCVDVFITTQTYVD--IASISVIPKTTGGQVYYYYPFSALSDPAKLYNDLRWNITR-PQGFEAVMRVRCSQGIQVQE 793 (1075)
Q Consensus 717 ~~gIsVDlFl~s~~~~D--latL~~La~~TGG~v~~Y~~F~~~~d~~kL~~dL~r~Ltr-~~g~~a~mrVR~S~GL~V~~ 793 (1075)
+++|+||||+++.+|+| |+||+.|+++|||+||||+.|+..+|..+|++||.|.|++ ++||+|+||||||+||+|++
T Consensus 1142 k~qISVDLFLfSsqYvDVDVATLg~Lsr~TGGqlyyYPnFna~rD~~KL~~DL~r~LTre~iGyEAVMRVRCS~GLrVs~ 1221 (1560)
T PTZ00395 1142 AFNISVDIFIISSNNVRVCVPSLQYVAQNTGGKILFVENFLWQKDYKEIYMNIMDTLTSEDIAYCCELKLRYSHHMSVKK 1221 (1560)
T ss_pred hcCCceEEEEccCcccccccccccchhcccceeEEEeCCCcccccHHHHHHHHHHHhhccceeeEEEEEEECCCCeEEEE
Confidence 99999999999999986 7999999999999999999999999999999999999998 69999999999999999999
Q ss_pred ee--CCcc--cCCCCceeecCCCCCCeEEEEEEecCCCCCCCceEEEEEEEEEecCCcEEEEEEecccCCCCCHHHHHhh
Q 001452 794 YH--GNFC--KRIPTDIDLPAIDCNKAIMVTLKHDDKLQDGSECAFQCALLYTTVYGQRRIRVTTLSLPCTSNLSNLYRS 869 (1075)
Q Consensus 794 ~~--Gnf~--~rs~~~~~lp~id~dtSi~~el~~d~~L~~~~~~~fQ~AlLYTt~~GeRrIRV~Tl~lpVts~l~~vf~~ 869 (1075)
|| |+++ .+++++++|++|++|++|+|+|+||++|.++..+|||+|||||+.+|||||||||++|+||+++.+||++
T Consensus 1222 fyG~GnnF~s~rStDLLaLP~Id~DqSfaVeLk~DEkL~~~~~AYFQaALLYTSssGERRIRVHTLALPVTSsLseVFrs 1301 (1560)
T PTZ00395 1222 LFCCNNNFNSIISVDTIKIPKIRHDQTFAFLLNYSDISESKKQIYFQCACIYTNLWGDRFVRLHTTHMNLTSSLSTVFRY 1301 (1560)
T ss_pred EeccCCccccccccccccccccCCCceEEEEEEeccccCCCCcEEEEEEEeeccCCCcEEEEEEeeeecccCCHHHHHHh
Confidence 99 4555 3688999999999999999999999999878899999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcccchhhcchHHHHHHHhhcccCCCCCC
Q 001452 870 ADLDTQFTCFMKQAASEIPSTPLANVREQMMNLCVNALVSYRKFCATVSSSGQLILPEALKLLPLYTLALIKSTGLRTDG 949 (1075)
Q Consensus 870 aD~dai~~~laK~a~~~~l~~~l~d~R~~L~~~lv~iL~~YRk~ca~~~s~gqLiLPesLklLPlyil~LlKS~~Lr~~~ 949 (1075)
+|++|++++|+|+|+.++++. .++|+.|.++|+++|++|||+|+...+++||||||+||+||+|+++|+||.+|+.++
T Consensus 1302 ADqdAIvslLAK~AV~~aLss--sdARe~L~dklVdILtaYRK~CAsssssgQLILPESLKLLPLYILSLLKS~AfRt~I 1379 (1560)
T PTZ00395 1302 TDAEALMNILIKQLCTNILHN--DNYSKIIIDNLAAILFSYRINCASSAHSGQLILPDTLKLLPLFTSSLLKHNVTKKEI 1379 (1560)
T ss_pred hcHHHHHHHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHhhccCCCccccchhHHHHHHHHHHHHhccccccCCC
Confidence 999999999999999999987 499999999999999999999999888999999999999999999999999999889
Q ss_pred CchHHHHHHHHHcCCChhhhcccccceEEEeccCCCC--------CCCCCCCCcccCccccccCCcEEEEEcCCeEEEEe
Q 001452 950 RIDDRSFWITYVSSVSIPFAVPFVYPRMVAIHDLDKG--------EDGSIIPPFLPLSSEHVSDEGIYLLENGEDALIYI 1021 (1075)
Q Consensus 950 s~DeR~~~~~~l~s~~v~~~~~~lYPrL~~lh~l~~~--------d~~~~lP~~l~LS~e~L~~~GiYLLD~G~~i~Lwv 1021 (1075)
+.|+|+++|++|+++++..++.+||||||+||++..+ ++.+.+|..|+||.++|+++||||||+|+.|||||
T Consensus 1380 ~sDeRVyaL~rL~SmPI~~Li~yLYPRLYpLHdL~~e~e~d~~d~d~~ivLPp~LrLS~ErLesdGIYLLDNGe~IyLWV 1459 (1560)
T PTZ00395 1380 LHDLKVYSLIKLLSMPIISSLLYVYPVMYVIHIKGKTNEIDSMDVDDDLFIPKTIPSSAEKIYSNGIYLLDACTHFYLYF 1459 (1560)
T ss_pred CccHHHHHHHHHhCCCHHHHHhhhcCceEEcccccccccCCccCCCCccccCCcccchHHHhcCCcEEEEECCCEEEEEE
Confidence 9999999999999999999999999999999997322 23456899999999999999999999999999999
Q ss_pred CCCCCHHHHHHhhCCCCCCCCCCccccCCCCCHHHHHHHHHHHHHHHhc--cCCC
Q 001452 1022 GSSVDSSILHQLFGISSVDEVPTQFVLQQYDNPLSKKLNDVVNEIRRQR--CSYL 1074 (1075)
Q Consensus 1022 G~~v~p~ll~~lFGv~s~~~l~~~~~lp~~d~~~s~~l~~iI~~lr~~r--~~~~ 1074 (1075)
|++|+++||+||||+..... ....|+++||++|+||++||++||++| ..|+
T Consensus 1460 G~~V~PqLLqDLFGv~~~~~--~~~eLPelDT~iS~RVrnII~~LR~~r~~~~Y~ 1512 (1560)
T PTZ00395 1460 GFHSDANFAKEIVGDIPTEK--NAHELNLTDTPNAQKVQRIIKNLSRIHHFNKYV 1512 (1560)
T ss_pred CCCCCHHHHHHHcCCCcccc--ccccccCCCCHHHHHHHHHHHHHHHhccCCCcc
Confidence 99999999999999743322 223689999999999999999999987 3665
No 4
>COG5028 Vesicle coat complex COPII, subunit SEC24/subunit SFB2/subunit SFB3 [Intracellular trafficking and secretion]
Probab=100.00 E-value=5.2e-146 Score=1266.41 Aligned_cols=668 Identities=37% Similarity=0.677 Sum_probs=642.4
Q ss_pred CCCCCCCCceeecCCCCCCCCceeeeccccCCCHHHhhhcCCceEEEEccCCCCCCCCCCceeccCCCCCCcccCCCCce
Q 001452 386 NPPPPATSEYIVRDMGNCSPRYMRCTISQIPCTNDLLTTSGMQLALLVQPLALPHPSEEPIQIVDFGDMGPVRCSRCKAY 465 (1075)
Q Consensus 386 ~~PP~~tt~~~~~D~gN~sP~yiR~T~~~iP~t~~ll~~~~LPlgivV~Pfa~~~~~e~pvPvvd~g~~~pvRC~rCrAY 465 (1075)
..||+ ++.|+..+++||+|+|+|+|+|+||.+.+++++++||||+||+||.++.++|.++|+++ +..|+||+|||+|
T Consensus 132 ~~ppl-tt~~~~~e~~n~~p~yvrsT~yaiP~t~dl~~~skiPfgLVI~Pf~~l~~e~~~vpl~~--d~~ivRCrrCrsY 208 (861)
T COG5028 132 IVPPL-TTNFVGSEQSNCSPKYVRSTMYAIPETNDLLKKSKIPFGLVIRPFLELYPEEDPVPLVE--DGSIVRCRRCRSY 208 (861)
T ss_pred CCCCc-ccceeeeccCCCCHHHHHHHHhhCCCchhHHHhcCCCceEEeehhhhcCccCCCCccCC--CCcchhhhhhHhh
Confidence 35676 99999999999999999999999999999999999999999999999999888999887 4458999999999
Q ss_pred ecCceEEEecCCeEEecCCCCCCCCCcccccCCCCCCCCCCCCCCCCccCccEEEEeccccccCCCCCcEEEEEEEcchh
Q 001452 466 INPFMKFIDQGRRFICSLCGFTDETPRDYHCNLGPDGRRRDADDRPELCRGTVEFVATKEYMVRDPMPAVFFFLIDVSMN 545 (1075)
Q Consensus 466 iNPf~~f~~~G~~W~Cn~C~~~N~vP~~Y~~~ld~~g~R~D~~~RPEL~~gtVEfvap~eY~~r~p~pp~yvFvIDvS~~ 545 (1075)
||||++|+++|++|+||+|+..|++|.+|+.....++.|.|+++|+||.+|+|||++|++|++|.+.|++|||+||||.+
T Consensus 209 iNPfv~fi~~g~kw~CNiC~~kN~vp~~~~~~~~~~~~r~d~~~r~El~~~vvdf~ap~~Y~~~~p~P~~yvFlIDVS~~ 288 (861)
T COG5028 209 INPFVQFIEQGRKWRCNICRSKNDVPEGFDNPSGPNDPRSDRYSRPELKSGVVDFLAPKEYSLRQPPPPVYVFLIDVSFE 288 (861)
T ss_pred cCceEEEecCCcEEEEeeccccccCcccccCcCCCCCccccccccchhhceeeEEecccceeeccCCCCEEEEEEEeehH
Confidence 99999999999999999999999999999988889999999999999999999999999999999999999999999999
Q ss_pred HHhhhHHHHHHHHHHHHHhcCCC-CCCcEEEEEEeCCeEEEEecCCCCCCceEeecCCccccccCCc-ccceeehHHhHH
Q 001452 546 ALQTGATAAACSAISQVISDLPE-GPRTMVGIATFDSTIHFYNLKRALQQPLMLIVPDVEDVYTPLQ-SDIIVPVSECRQ 623 (1075)
Q Consensus 546 av~sG~l~~v~~aI~~~L~~Lp~-~~rt~VGiITFDs~VhfYnl~~~l~qpqmlVvsDldd~FvPl~-~~lLv~l~esr~ 623 (1075)
++++|++.++.++|++.|+.+++ ++|+||+||.||++||||+++.+++ .+|++++|+||+|+|.+ .+|++++++++.
T Consensus 289 a~~~g~~~a~~r~Il~~l~~~~~~dpr~kIaii~fD~sl~ffk~s~d~~-~~~~~vsdld~pFlPf~s~~fv~pl~~~k~ 367 (861)
T COG5028 289 AIKNGLVKAAIRAILENLDQIPNFDPRTKIAIICFDSSLHFFKLSPDLD-EQMLIVSDLDEPFLPFPSGLFVLPLKSCKQ 367 (861)
T ss_pred hhhcchHHHHHHHHHhhccCCCCCCCcceEEEEEEcceeeEEecCCCCc-cceeeecccccccccCCcchhcccHHHHHH
Confidence 99999999999999999999976 7899999999999999999998873 38999999999999998 678889999999
Q ss_pred HHHHHHhhcCccccCCCCccchHHHHHHHHHHHHHhcCCEEEEEecCCCCcCcccccccccccCCCCCCCccccccccch
Q 001452 624 HLELLLESIPSMFQNNRTAESAFGAAVKAAFLALKSTGGKLLVFQSVLPSVGIGALSAREAEGRSNISSGEKETHKLLQP 703 (1075)
Q Consensus 624 ~I~~lLd~Lp~~f~~~~~~~~~lG~AL~aA~~lL~~~GGkIivF~sg~Pt~GpG~L~~re~~~r~~~~~gt~ke~~ll~p 703 (1075)
.++.||+.++.+|.+++.++.|+|.||++|..+++.+||||++|.+++||+|.|+|..|+| +|+.++.+
T Consensus 368 ~~etLl~~~~~If~d~~~pk~~~G~aLk~a~~l~g~~GGkii~~~stlPn~G~Gkl~~r~d-----------~e~~ll~c 436 (861)
T COG5028 368 IIETLLDRVPRIFQDNKSPKNALGPALKAAKSLIGGTGGKIIVFLSTLPNMGIGKLQLRED-----------KESSLLSC 436 (861)
T ss_pred HHHHHHHHhhhhhcccCCCccccCHHHHHHHHHhhccCceEEEEeecCCCccccccccccc-----------chhhhccc
Confidence 9999999999999999999999999999999999999999999999999999999999875 45668999
Q ss_pred hHHHHHHHHHHHHhcCcEEEEEEecCCccCccccccccccccceEEEEcCCCccc--chHHHHHHHHHhccCCccccceE
Q 001452 704 ADKTLKAMAIEFAEYQVCVDVFITTQTYVDIASISVIPKTTGGQVYYYYPFSALS--DPAKLYNDLRWNITRPQGFEAVM 781 (1075)
Q Consensus 704 a~~FYk~LA~~~~~~gIsVDlFl~s~~~~DlatL~~La~~TGG~v~~Y~~F~~~~--d~~kL~~dL~r~Ltr~~g~~a~m 781 (1075)
.+.|||+++.+|.+.||+||+|+++.+|+|+||++.|+++|||++|||++|++.+ |..||.+||.+++++++||+++|
T Consensus 437 ~d~fYk~~a~e~~k~gIsvd~Flt~~~yidvaTls~l~~~T~G~~~~Yp~f~~~~~~d~~kl~~dL~~~ls~~~gy~~~~ 516 (861)
T COG5028 437 KDSFYKEFAIECSKVGISVDLFLTSEDYIDVATLSHLCRYTGGQTYFYPNFSATRPNDATKLANDLVSHLSMEIGYEAVM 516 (861)
T ss_pred cchHHHHHHHHHHHhcceEEEEeccccccchhhhcchhhccCcceEEcCCcccCCchhHHHHHHHHHHhhhhhhhhheee
Confidence 9999999999999999999999999999999999999999999999999999998 99999999999999999999999
Q ss_pred EEEeCCCceEEeeeCCcccCCCCceeecCCCCCCeEEEEEEecCCCCCCCceEEEEEEEEEecCCcEEEEEEecccCCCC
Q 001452 782 RVRCSQGIQVQEYHGNFCKRIPTDIDLPAIDCNKAIMVTLKHDDKLQDGSECAFQCALLYTTVYGQRRIRVTTLSLPCTS 861 (1075)
Q Consensus 782 rVR~S~GL~V~~~~Gnf~~rs~~~~~lp~id~dtSi~~el~~d~~L~~~~~~~fQ~AlLYTt~~GeRrIRV~Tl~lpVts 861 (1075)
|||||+||++++|||||+.|+.++++|+.++.|+|+.|+|++|++|.. ..+|||+|+|||+.+|||||||.|+++++++
T Consensus 517 rvR~S~glr~s~fyGnf~~rs~dl~~F~tm~rd~Sl~~~~sid~~l~~-~~v~fQvAlL~T~~~GeRRiRVvn~s~~~ss 595 (861)
T COG5028 517 RVRCSTGLRVSSFYGNFFNRSSDLCAFSTMPRDTSLLVEFSIDEKLMT-SDVYFQVALLYTLNDGERRIRVVNLSLPTSS 595 (861)
T ss_pred EeeccCceehhhhhccccccCcccccccccCCCceEEEEEEecccccC-CceEEEEEEEeeccCCceEEEEEEeccccch
Confidence 999999999999999999999999999999999999999999999976 8999999999999999999999999999999
Q ss_pred CHHHHHhhcchhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcccchhhcchHHHHHHHhhc
Q 001452 862 NLSNLYRSADLDTQFTCFMKQAASEIPSTPLANVREQMMNLCVNALVSYRKFCATVSSSGQLILPEALKLLPLYTLALIK 941 (1075)
Q Consensus 862 ~l~~vf~~aD~dai~~~laK~a~~~~l~~~l~d~R~~L~~~lv~iL~~YRk~ca~~~s~gqLiLPesLklLPlyil~LlK 941 (1075)
++.|+|+++|+++|+++|+|+|+.++++..++++|+.|++.+++||++|||.|+....++||+||++||+||+++++|+|
T Consensus 596 ~~~evyasadq~aIa~~lak~a~~~~~~~s~~~~r~~i~~s~~~IL~~Ykk~~~~snt~tql~Lp~nL~lLPll~lal~K 675 (861)
T COG5028 596 SIREVYASADQLAIACILAKKASTKALNSSLKEARVLINKSMVDILKAYKKELVKSNTSTQLPLPANLKLLPLLMLALLK 675 (861)
T ss_pred hHHHHHHhccHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccchhhhHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999998888889999999999999999999999
Q ss_pred ccCCC-CCCCchHHHHHHHHHcCCChhhhcccccceEEEeccCCCCC-----CCCCCCCcccCccccccCCcEEEEEcCC
Q 001452 942 STGLR-TDGRIDDRSFWITYVSSVSIPFAVPFVYPRMVAIHDLDKGE-----DGSIIPPFLPLSSEHVSDEGIYLLENGE 1015 (1075)
Q Consensus 942 S~~Lr-~~~s~DeR~~~~~~l~s~~v~~~~~~lYPrL~~lh~l~~~d-----~~~~lP~~l~LS~e~L~~~GiYLLD~G~ 1015 (1075)
|.+|| ..++.|+|+++++++.+++++++++.|||+||++|++..|+ +..+++.+|++|.+.|+++|+||||+|.
T Consensus 676 s~~~rs~~~~sD~r~~~L~~l~~~p~~~l~~~iYP~lyalHdm~~e~~l~~~~~~~~~~piNaT~s~le~~GlYLidtg~ 755 (861)
T COG5028 676 SSAFRSGSTPSDIRISALNRLTSLPLKQLMRNIYPTLYALHDMPIEAGLPDEGLLVLPSPINATSSLLESGGLYLIDTGQ 755 (861)
T ss_pred hcccccCCCccchhHHHHHHhhcCCHHHHHHhhccceeeecccccccCCCcccccccccchhhhHHHHhcCCeEEEEcCC
Confidence 99999 67889999999999999999999999999999999986652 2467899999999999999999999999
Q ss_pred eEEEEeCCCCCHHHHHHhhCCCCCCCCC-CccccCCCCCHHHHHHHHHHHHHHHh
Q 001452 1016 DALIYIGSSVDSSILHQLFGISSVDEVP-TQFVLQQYDNPLSKKLNDVVNEIRRQ 1069 (1075)
Q Consensus 1016 ~i~LwvG~~v~p~ll~~lFGv~s~~~l~-~~~~lp~~d~~~s~~l~~iI~~lr~~ 1069 (1075)
++|||+|+++++.|++||||++++.+|+ .+..+|+.+|++|.+|++||++||..
T Consensus 756 ~iflw~g~d~~p~Ll~dlf~~~~~~~I~~~k~~~p~~~n~~n~~v~~iI~~lrs~ 810 (861)
T COG5028 756 KIFLWFGKDAVPSLLQDLFGVDSLSDIPSGKFTLPPTGNEFNERVRNIIGELRSV 810 (861)
T ss_pred EEEEEecCCCCHHHHHHhcCcchhhhccccccccCCcCCHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999 88899999999999999999999984
No 5
>PLN00162 transport protein sec23; Provisional
Probab=100.00 E-value=7.6e-116 Score=1076.82 Aligned_cols=589 Identities=21% Similarity=0.308 Sum_probs=530.0
Q ss_pred CCCceeeeccccCCCHHHhhhcCCceEEEEccCCCCCCCCCCceeccCCCCCCcccCCCCceecCceEEEecCCeEEecC
Q 001452 404 SPRYMRCTISQIPCTNDLLTTSGMQLALLVQPLALPHPSEEPIQIVDFGDMGPVRCSRCKAYINPFMKFIDQGRRFICSL 483 (1075)
Q Consensus 404 sP~yiR~T~~~iP~t~~ll~~~~LPlgivV~Pfa~~~~~e~pvPvvd~g~~~pvRC~rCrAYiNPf~~f~~~G~~W~Cn~ 483 (1075)
+-++||+|||+||.|++++++++||||++|+||+...+ +|++++ +|+||++|||||||||+|+++|++|+|||
T Consensus 8 ~~~gvR~s~n~~P~t~~~~~~~~iPlg~v~tPl~~~~~----vp~v~~---~pvRC~~CraylNPf~~~d~~~~~W~C~~ 80 (761)
T PLN00162 8 AIDGVRMSWNVWPSSKIEASKCVIPLAALYTPLKPLPE----LPVLPY---DPLRCRTCRAVLNPYCRVDFQAKIWICPF 80 (761)
T ss_pred ccCceEeeeecCCCCHHHHhcCCCCeEEEEecCCcCCC----CCcCCC---CCCccCCCcCEECCceEEecCCCEEEccC
Confidence 45789999999999999999999999999999997632 888874 69999999999999999999999999999
Q ss_pred CCCCCCCCcccccCCCCCCCCCCCCCCCCc--cCccEEEEeccccccCCCCCcEEEEEEEcchhHHhhhHHHHHHHHHHH
Q 001452 484 CGFTDETPRDYHCNLGPDGRRRDADDRPEL--CRGTVEFVATKEYMVRDPMPAVFFFLIDVSMNALQTGATAAACSAISQ 561 (1075)
Q Consensus 484 C~~~N~vP~~Y~~~ld~~g~R~D~~~RPEL--~~gtVEfvap~eY~~r~p~pp~yvFvIDvS~~av~sG~l~~v~~aI~~ 561 (1075)
|+..|++|.+|+ +++.+ +.+||| .++||||++++ |+.+++.||+||||||+|..+++ ++.++++|+.
T Consensus 81 C~~~N~~P~~Y~-~~~~~------~~p~EL~p~~~TvEY~~p~-~~~~~~~pp~fvFvID~s~~~~~---l~~lk~sl~~ 149 (761)
T PLN00162 81 CFQRNHFPPHYS-SISET------NLPAELFPQYTTVEYTLPP-GSGGAPSPPVFVFVVDTCMIEEE---LGALKSALLQ 149 (761)
T ss_pred CCCCCCCchHhc-ccCcc------CCChhhcCCceeEEEECCC-CCCCCCCCcEEEEEEecchhHHH---HHHHHHHHHH
Confidence 999999999997 44432 468999 89999999998 99999999999999999999988 5566899999
Q ss_pred HHhcCCCCCCcEEEEEEeCCeEEEEecCCCCCCceEeecC--------Cccc----------------------cccCCc
Q 001452 562 VISDLPEGPRTMVGIATFDSTIHFYNLKRALQQPLMLIVP--------DVED----------------------VYTPLQ 611 (1075)
Q Consensus 562 ~L~~Lp~~~rt~VGiITFDs~VhfYnl~~~l~qpqmlVvs--------Dldd----------------------~FvPl~ 611 (1075)
+|+.||++ ++|||||||++||||+|+... .++++|+. |++| .|+|..
T Consensus 150 ~L~~LP~~--a~VGlITF~s~V~~~~L~~~~-~~~~~Vf~g~k~~t~~~l~~~l~l~~~~~~~~~~~~~~~~~~~~~p~~ 226 (761)
T PLN00162 150 AIALLPEN--ALVGLITFGTHVHVHELGFSE-CSKSYVFRGNKEVSKDQILEQLGLGGKKRRPAGGGIAGARDGLSSSGV 226 (761)
T ss_pred HHHhCCCC--CEEEEEEECCEEEEEEcCCCC-CcceEEecCCccCCHHHHHHHhccccccccccccccccccccccCCCc
Confidence 99999976 899999999999999998654 57788876 2212 235567
Q ss_pred ccceeehHHhHHHHHHHHhhcCccc---cCCCCccchHHHHHHHHHHHHH----hcCCEEEEEecCCCCcCccccccccc
Q 001452 612 SDIIVPVSECRQHLELLLESIPSMF---QNNRTAESAFGAAVKAAFLALK----STGGKLLVFQSVLPSVGIGALSAREA 684 (1075)
Q Consensus 612 ~~lLv~l~esr~~I~~lLd~Lp~~f---~~~~~~~~~lG~AL~aA~~lL~----~~GGkIivF~sg~Pt~GpG~L~~re~ 684 (1075)
++||++++||+..|+++||+|++++ .++++.++|+|+||++|..+|+ .+||||++|++|+||+|+|+|+.|+.
T Consensus 227 ~~fLvpl~e~~~~i~~lLe~L~~~~~~~~~~~rp~r~tG~AL~vA~~lL~~~~~~~gGrI~~F~sgppT~GpG~v~~r~~ 306 (761)
T PLN00162 227 NRFLLPASECEFTLNSALEELQKDPWPVPPGHRPARCTGAALSVAAGLLGACVPGTGARIMAFVGGPCTEGPGAIVSKDL 306 (761)
T ss_pred cceeEEHHHHHHHHHHHHHhhhccccccCCCCCCCccHHHHHHHHHHHHhhccCCCceEEEEEeCCCCCCCCceeecccc
Confidence 8999999999999999999999864 5678899999999999999998 57999999999999999999999874
Q ss_pred --ccCCCCCCCccccccccchhHHHHHHHHHHHHhcCcEEEEEEecCCccCccccccccccccceEEEEcCCCcccchHH
Q 001452 685 --EGRSNISSGEKETHKLLQPADKTLKAMAIEFAEYQVCVDVFITTQTYVDIASISVIPKTTGGQVYYYYPFSALSDPAK 762 (1075)
Q Consensus 685 --~~r~~~~~gt~ke~~ll~pa~~FYk~LA~~~~~~gIsVDlFl~s~~~~DlatL~~La~~TGG~v~~Y~~F~~~~d~~k 762 (1075)
..|+|.++ .+++.++++++.+||++||++|+++||+||||+++.+|+||++|+.|++.|||.+++|++|+. ++
T Consensus 307 ~~~~rsh~di-~k~~~~~~~~a~~fY~~la~~~~~~gisvDlF~~s~dqvglaem~~l~~~TGG~v~~~~sF~~----~~ 381 (761)
T PLN00162 307 SEPIRSHKDL-DKDAAPYYKKAVKFYEGLAKQLVAQGHVLDVFACSLDQVGVAEMKVAVERTGGLVVLAESFGH----SV 381 (761)
T ss_pred cccccCcccc-ccchhhhcchHHHHHHHHHHHHHHcCceEEEEEccccccCHHHHhhhHhhcCcEEEEeCCcCh----HH
Confidence 34544444 345567999999999999999999999999999999999999999999999999999999964 58
Q ss_pred HHHHHHHhccCC------ccccceEEEEeCCCceEEeeeCCccc---------------CCCCceeecCCCCCCeEEEEE
Q 001452 763 LYNDLRWNITRP------QGFEAVMRVRCSQGIQVQEYHGNFCK---------------RIPTDIDLPAIDCNKAIMVTL 821 (1075)
Q Consensus 763 L~~dL~r~Ltr~------~g~~a~mrVR~S~GL~V~~~~Gnf~~---------------rs~~~~~lp~id~dtSi~~el 821 (1075)
|.++|+|.++|+ +||+|+||||||+||+|.++|||++. +++++|+++++|+|++|+|+|
T Consensus 382 f~~~l~r~~~r~~~~~~~~gf~a~~~VrtS~glkv~g~~G~~~s~~~~~~~vsd~~iG~g~T~~w~l~~l~~~~t~av~f 461 (761)
T PLN00162 382 FKDSLRRVFERDGEGSLGLSFNGTFEVNCSKDVKVQGAIGPCASLEKKGPSVSDTEIGEGGTTAWKLCGLDKKTSLAVFF 461 (761)
T ss_pred HHHHHHHHhcccccccccccceeEEEEEecCCeEEeeeEcCcccccccCCccccccccCCCCceeeecCcCcCCEEEEEE
Confidence 999999999974 89999999999999999999999862 357789999999999999999
Q ss_pred EecCCC-----CCCCceEEEEEEEEEecCCcEEEEEEecccCCCC--CHHHHHhhcchhHHHHHHHHHHHHhcCCCCHHH
Q 001452 822 KHDDKL-----QDGSECAFQCALLYTTVYGQRRIRVTTLSLPCTS--NLSNLYRSADLDTQFTCFMKQAASEIPSTPLAN 894 (1075)
Q Consensus 822 ~~d~~L-----~~~~~~~fQ~AlLYTt~~GeRrIRV~Tl~lpVts--~l~~vf~~aD~dai~~~laK~a~~~~l~~~l~d 894 (1075)
+++++. .+...+|||+|++||+.+|+|||||||++++++. ++.++|+++|+||++++|+|+|+++++++.+.|
T Consensus 462 ~~~~~~~~~~~~~~~~~~iQ~a~lYt~~~G~rRiRV~T~~~~~~~~~~~~~v~~~fDqeA~a~llaR~av~k~~~~~~~d 541 (761)
T PLN00162 462 EVANSGQSNPQPPGQQFFLQFLTRYQHSNGQTRLRVTTVTRRWVEGSSSEELVAGFDQEAAAVVMARLASHKMETEEEFD 541 (761)
T ss_pred EEccccccCCCCCCceEEEEEEEEEEcCCCCEEEEEEccccCccCCCCHHHHHHhcCHHHHHHHHHHHHHHHHhhCCHHH
Confidence 999775 4556799999999999999999999999999754 889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH---HHHHhhcccCCCCCcccchhhcchHHHHHHHhhcccCCC-CCCCchHHHHHHHHHcCCChhhhc
Q 001452 895 VREQMMNLCVNAL---VSYRKFCATVSSSGQLILPEALKLLPLYTLALIKSTGLR-TDGRIDDRSFWITYVSSVSIPFAV 970 (1075)
Q Consensus 895 ~R~~L~~~lv~iL---~~YRk~ca~~~s~gqLiLPesLklLPlyil~LlKS~~Lr-~~~s~DeR~~~~~~l~s~~v~~~~ 970 (1075)
+|++|+++|++++ ..|||.+ +.+|+||++||+||+|+|+|+||.+|+ .++++|||+++++.+++++++.++
T Consensus 542 ~~r~ld~~li~~~~~f~~Yrk~~-----~~s~~Lp~~~~~lP~f~~~LrRS~~l~~~n~spDera~~r~~l~~~~~~~sl 616 (761)
T PLN00162 542 ATRWLDRALIRLCSKFGDYRKDD-----PSSFRLSPNFSLYPQFMFNLRRSQFVQVFNNSPDETAYFRMMLNRENVTNSL 616 (761)
T ss_pred HHHHHHHHHHHHHHHHhhhcccC-----CccccCCHHHHHHHHHHHHHhhhhhccCCCCCchHHHHHHHHHhcCCHHHHH
Confidence 9999999999886 5677755 346999999999999999999999999 899999999999999999999999
Q ss_pred ccccceEEEeccCCCCCCCCCCCCcccCccccccCCcEEEEEcCCeEEEEeCCCCCHHHH
Q 001452 971 PFVYPRMVAIHDLDKGEDGSIIPPFLPLSSEHVSDEGIYLLENGEDALIYIGSSVDSSIL 1030 (1075)
Q Consensus 971 ~~lYPrL~~lh~l~~~d~~~~lP~~l~LS~e~L~~~GiYLLD~G~~i~LwvG~~v~p~ll 1030 (1075)
.||||+||++|.- .+|+++.|+.++|++|||||||+|++++||+|+.|..+..
T Consensus 617 ~mI~P~L~sy~~~-------~~P~pv~Ld~~si~~d~ilLLD~~f~vvi~~G~~ia~w~~ 669 (761)
T PLN00162 617 VMIQPTLISYSFN-------GPPEPVLLDVASIAADRILLLDSYFSVVIFHGSTIAQWRK 669 (761)
T ss_pred HhhCCeEEEecCC-------CCCcceecchhhccCCceEEEeCCCEEEEEecCcccchhh
Confidence 9999999999941 2588999999999999999999999999999998876544
No 6
>KOG1986 consensus Vesicle coat complex COPII, subunit SEC23 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.9e-80 Score=713.27 Aligned_cols=589 Identities=20% Similarity=0.304 Sum_probs=513.3
Q ss_pred CCCCceeeeccccCCCHHHhhhcCCceEEEEccCCCCCCCCCCceeccCCCCCCcccCCCCceecCceEEEecCCeEEec
Q 001452 403 CSPRYMRCTISQIPCTNDLLTTSGMQLALLVQPLALPHPSEEPIQIVDFGDMGPVRCSRCKAYINPFMKFIDQGRRFICS 482 (1075)
Q Consensus 403 ~sP~yiR~T~~~iP~t~~ll~~~~LPlgivV~Pfa~~~~~e~pvPvvd~g~~~pvRC~rCrAYiNPf~~f~~~G~~W~Cn 482 (1075)
-.-+-+|+|||.+|.++.-..++.+|++++++||.+.+. ++++ .++|+||++|+||+||||.++.+.+.|.|+
T Consensus 7 e~~dGvR~twnvwPs~~~~~~~~vvPla~lytPl~e~~~----~~~~---~y~P~~C~~C~AvlNPyc~vd~~a~~W~Cp 79 (745)
T KOG1986|consen 7 EEIDGVRFTWNVWPSTRAEASRTVVPLACLYTPLKERPD----LPPI---QYDPLRCSKCGAVLNPYCSVDFRAKSWICP 79 (745)
T ss_pred ccCCCcccccccCCCcccccccccccHHHhccccccCCC----CCcc---CCCCchhccchhhcCcceeecccCceEecc
Confidence 345679999999999999999999999999999996543 5555 467999999999999999999999999999
Q ss_pred CCCCCCCCCcccccCCCCCCCCCCCCCCCCc--cCccEEEEeccccccCCCCCcEEEEEEEcchhHHhhhHHHHHHHHHH
Q 001452 483 LCGFTDETPRDYHCNLGPDGRRRDADDRPEL--CRGTVEFVATKEYMVRDPMPAVFFFLIDVSMNALQTGATAAACSAIS 560 (1075)
Q Consensus 483 ~C~~~N~vP~~Y~~~ld~~g~R~D~~~RPEL--~~gtVEfvap~eY~~r~p~pp~yvFvIDvS~~av~sG~l~~v~~aI~ 560 (1075)
||...|.+|.+|-. +..+ +.-+|| ...+|||+..+.. ..||+||||||++....+ |+.++++|+
T Consensus 80 fC~qrN~~p~~Y~~-is~~------n~P~el~Pq~stvEy~l~~~~----~~ppvf~fVvDtc~~eee---L~~LkssL~ 145 (745)
T KOG1986|consen 80 FCNQRNPFPPHYSG-ISEN------NLPPELLPQYSTVEYTLSPGR----VSPPVFVFVVDTCMDEEE---LQALKSSLK 145 (745)
T ss_pred ccccCCCCChhhcc-cCcc------CCChhhcCCcceeEEecCCCC----CCCceEEEEEeeccChHH---HHHHHHHHH
Confidence 99999999999853 3221 344588 6889999998663 358999999999999977 788899999
Q ss_pred HHHhcCCCCCCcEEEEEEeCCeEEEEecCCCCCCceEeecC---Cc-----ccc-ccC-----------CcccceeehHH
Q 001452 561 QVISDLPEGPRTMVGIATFDSTIHFYNLKRALQQPLMLIVP---DV-----EDV-YTP-----------LQSDIIVPVSE 620 (1075)
Q Consensus 561 ~~L~~Lp~~~rt~VGiITFDs~VhfYnl~~~l~qpqmlVvs---Dl-----dd~-FvP-----------l~~~lLv~l~e 620 (1075)
..|+.||++ ++||||||++.||+|.|+... ..+..|+. |+ .|. ... ....||.++.+
T Consensus 146 ~~l~lLP~~--alvGlItfg~~v~v~el~~~~-~sk~~VF~G~ke~s~~q~~~~L~~~~~~~~~~~~~~~~~rFL~P~~~ 222 (745)
T KOG1986|consen 146 QSLSLLPEN--ALVGLITFGTMVQVHELGFEE-CSKSYVFSGNKEYSAKQLLDLLGLSGGAGKGSENQSASNRFLLPAQE 222 (745)
T ss_pred HHHhhCCCc--ceEEEEEecceEEEEEcCCCc-ccceeEEeccccccHHHHHHHhcCCcccccCCcccccchhhhccHHH
Confidence 999999987 899999999999999998653 23444543 21 111 000 11368999999
Q ss_pred hHHHHHHHHhhcCc---cccCCCCccchHHHHHHHHHHHHHh----cCCEEEEEecCCCCcCcccccccc--cccCCCCC
Q 001452 621 CRQHLELLLESIPS---MFQNNRTAESAFGAAVKAAFLALKS----TGGKLLVFQSVLPSVGIGALSARE--AEGRSNIS 691 (1075)
Q Consensus 621 sr~~I~~lLd~Lp~---~f~~~~~~~~~lG~AL~aA~~lL~~----~GGkIivF~sg~Pt~GpG~L~~re--~~~r~~~~ 691 (1075)
|...|.++|++|.. -....++..||+|.||.+|+.+|+. +|+||++|++|+||.|||.+..+| +..|+|++
T Consensus 223 c~~~L~~lle~L~~d~wpV~~g~Rp~RcTG~Al~iA~~Ll~~c~p~~g~rIv~f~gGPcT~GpG~vv~~el~~piRshhd 302 (745)
T KOG1986|consen 223 CEFKLTNLLEELQPDPWPVPPGHRPLRCTGVALSIASGLLEGCFPNTGARIVLFAGGPCTRGPGTVVSRELKEPIRSHHD 302 (745)
T ss_pred HHHHHHHHHHHhcCCCCCCCCCCCcccchhHHHHHHHHHhcccCCCCcceEEEeccCCCCcCCceecchhhcCCCcCccc
Confidence 99999999999954 3456788999999999999999985 699999999999999999999986 46788877
Q ss_pred CCccccccccchhHHHHHHHHHHHHhcCcEEEEEEecCCccCccccccccccccceEEEEcCCCcccchHHHHHHHHHhc
Q 001452 692 SGEKETHKLLQPADKTLKAMAIEFAEYQVCVDVFITTQTYVDIASISVIPKTTGGQVYYYYPFSALSDPAKLYNDLRWNI 771 (1075)
Q Consensus 692 ~gt~ke~~ll~pa~~FYk~LA~~~~~~gIsVDlFl~s~~~~DlatL~~La~~TGG~v~~Y~~F~~~~d~~kL~~dL~r~L 771 (1075)
+ +++...+++++.+||++||++++.+|.+||+|+++.++++|++|..|++.|||.|...+.|+. +.|..+++|++
T Consensus 303 i-~~d~a~y~kKa~KfY~~La~r~~~~ghvlDifa~~lDQvGi~EMk~l~~~TGG~lvl~dsF~~----s~Fk~sfqR~f 377 (745)
T KOG1986|consen 303 I-EKDNAPYYKKAIKFYEKLAERLANQGHVLDIFAAALDQVGILEMKPLVESTGGVLVLGDSFNT----SIFKQSFQRIF 377 (745)
T ss_pred c-cCcchHHHHHHHHHHHHHHHHHHhCCceEeeeeeeccccchHHHHHHhhcCCcEEEEecccch----HHHHHHHHHHh
Confidence 7 445567889999999999999999999999999999999999999999999999999999975 46778888888
Q ss_pred c------CCccccceEEEEeCCCceEEeeeCCccc---------------CCCCceeecCCCCCCeEEEEEEecCC--CC
Q 001452 772 T------RPQGFEAVMRVRCSQGIQVQEYHGNFCK---------------RIPTDIDLPAIDCNKAIMVTLKHDDK--LQ 828 (1075)
Q Consensus 772 t------r~~g~~a~mrVR~S~GL~V~~~~Gnf~~---------------rs~~~~~lp~id~dtSi~~el~~d~~--L~ 828 (1075)
+ ...||+|.|+|+||++|+|.+.+|++.. +++..|++..++..+++++.|++... ++
T Consensus 378 ~~d~~~~l~~~fn~~leV~tSkdlkI~g~IGp~~Sl~~k~~~vsdt~ig~g~t~~wkm~~ls~~t~~s~~fei~~~~~~~ 457 (745)
T KOG1986|consen 378 TRDGEGDLKMGFNGTLEVKTSKDLKIQGVIGPCVSLNKKGPNVSDTEIGEGNTSAWKMCGLSPSTTLSLFFEISNQHNIP 457 (745)
T ss_pred ccccccchhhhcCceEEEEecCCcEEEecccccccccCCCCccccceeccccccceeeeccCCCceEEEEEEeccccCCC
Confidence 8 4689999999999999999999998653 35668999999999999999998753 34
Q ss_pred CCCceEEEEEEEEEecCCcEEEEEEecccCCCCCH-HHHHhhcchhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 001452 829 DGSECAFQCALLYTTVYGQRRIRVTTLSLPCTSNL-SNLYRSADLDTQFTCFMKQAASEIPSTPLANVREQMMNLCVNAL 907 (1075)
Q Consensus 829 ~~~~~~fQ~AlLYTt~~GeRrIRV~Tl~lpVts~l-~~vf~~aD~dai~~~laK~a~~~~l~~~l~d~R~~L~~~lv~iL 907 (1075)
.+..+|||+++.|.+.+|++||||.|++++.++.. .++-.++|+||.++++||+++.++.+..-.|+++|+++.++++.
T Consensus 458 ~~~~~~iQFiT~Yq~s~g~~riRVtT~~r~~~d~~~~~i~~~FDqEaaAV~mAR~~~~kae~e~~~d~~rwlDr~Lirlc 537 (745)
T KOG1986|consen 458 QSGQGYIQFITQYQHSSGQKRIRVTTLARPWADSGSPEISQSFDQEAAAVLMARLALLKAETEDGPDVLRWLDRNLIRLC 537 (745)
T ss_pred CCCeeEEEEEEEEEcCCCcEEEEEEEeehhhccccchHhhhccchHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHH
Confidence 46689999999999999999999999999999886 58889999999999999999999998888899999999999999
Q ss_pred HHHHhhcccCCCCCcccchhhcchHHHHHHHhhcccCCC-CCCCchHHHHHHHHHcCCChhhhcccccceEEEeccCCCC
Q 001452 908 VSYRKFCATVSSSGQLILPEALKLLPLYTLALIKSTGLR-TDGRIDDRSFWITYVSSVSIPFAVPFVYPRMVAIHDLDKG 986 (1075)
Q Consensus 908 ~~YRk~ca~~~s~gqLiLPesLklLPlyil~LlKS~~Lr-~~~s~DeR~~~~~~l~s~~v~~~~~~lYPrL~~lh~l~~~ 986 (1075)
..|..+.... +..+.|+++|.++|.|+++|+||+.|. .|.|+|||+|++|+|.+.++.+++.|+.|+|++++...
T Consensus 538 ~kFg~y~k~d--Pssf~l~~~fsl~PQfmfhLRRS~fLqvfNnSPDEt~~yrhll~~e~v~~sliMIqP~L~sySf~g-- 613 (745)
T KOG1986|consen 538 QKFGDYRKDD--PSSFRLSPNFSLYPQFMFHLRRSPFLQVFNNSPDETAYYRHLLNREDVDNSLIMIQPTLLSYSFNG-- 613 (745)
T ss_pred HHHhccCCCC--chhhcCChhhhhhHHHHHhhccchhhhccCCCcchHHHHHHHHhhccchhhhheecceeeeeecCC--
Confidence 9887776544 456789999999999999999999999 89999999999999999999999999999999998643
Q ss_pred CCCCCCCCcccCccccccCCcEEEEEcCCeEEEEeCCCCCHHH
Q 001452 987 EDGSIIPPFLPLSSEHVSDEGIYLLENGEDALIYIGSSVDSSI 1029 (1075)
Q Consensus 987 d~~~~lP~~l~LS~e~L~~~GiYLLD~G~~i~LwvG~~v~p~l 1029 (1075)
-|+++.|+..+|..|.|+|||+.+.|+||.|..+..+.
T Consensus 614 -----~~epvlLD~~Si~~D~iLLlDt~f~i~i~hG~tIaqWR 651 (745)
T KOG1986|consen 614 -----PPEPVLLDVASILADRILLLDTYFTIVIFHGSTIAQWR 651 (745)
T ss_pred -----CCceeEecccccCCceEEEeecceEEEEECCchHHHHH
Confidence 36789999999999999999999999999999887543
No 7
>COG5047 SEC23 Vesicle coat complex COPII, subunit SEC23 [Intracellular trafficking and secretion]
Probab=100.00 E-value=1.9e-71 Score=626.54 Aligned_cols=588 Identities=20% Similarity=0.303 Sum_probs=500.4
Q ss_pred CCCCCceeeeccccCCCHHHhhhcCCceEEEEccCCCCCCCCCCceeccCCCCCCcccCC-CCceecCceEEEecCCeEE
Q 001452 402 NCSPRYMRCTISQIPCTNDLLTTSGMQLALLVQPLALPHPSEEPIQIVDFGDMGPVRCSR-CKAYINPFMKFIDQGRRFI 480 (1075)
Q Consensus 402 N~sP~yiR~T~~~iP~t~~ll~~~~LPlgivV~Pfa~~~~~e~pvPvvd~g~~~pvRC~r-CrAYiNPf~~f~~~G~~W~ 480 (1075)
+-+-+.||+|||++|.|+....++.+|++++++||.+.+. +.+. ...++.|.. |+||+||||.++.+.+.|+
T Consensus 6 iee~dgir~twnvfpat~~da~~~~iPia~lY~Pl~e~~~----~~v~---~yepv~C~~pC~avlnpyC~id~r~~~W~ 78 (755)
T COG5047 6 IEENDGIRLTWNVFPATRGDATRTVIPIACLYTPLHEDDA----LTVN---YYEPVKCTAPCKAVLNPYCHIDERNQSWI 78 (755)
T ss_pred hccccceEEEEecccCCccccccccccHHHhccccccccc----cCcc---cCCCceecccchhhcCcceeeccCCceEe
Confidence 3445679999999999999999999999999999997422 4443 467999999 9999999999999999999
Q ss_pred ecCCCCCCCCCcccccCCCCCCCCCCCCCCCCc--cCccEEEEeccccccCCCCCcEEEEEEEcchhHHhhhHHHHHHHH
Q 001452 481 CSLCGFTDETPRDYHCNLGPDGRRRDADDRPEL--CRGTVEFVATKEYMVRDPMPAVFFFLIDVSMNALQTGATAAACSA 558 (1075)
Q Consensus 481 Cn~C~~~N~vP~~Y~~~ld~~g~R~D~~~RPEL--~~gtVEfvap~eY~~r~p~pp~yvFvIDvS~~av~sG~l~~v~~a 558 (1075)
|.||+..|.+|..|-. +.. .+.-+|| .+.||||+..++ .-.+++|+||||+++...+ |.+++++
T Consensus 79 CpfCnqrn~lp~qy~~-iS~------~~LplellpqssTiey~lskp----~~~ppvf~fvvD~~~D~e~---l~~Lkds 144 (755)
T COG5047 79 CPFCNQRNTLPPQYRD-ISN------ANLPLELLPQSSTIEYTLSKP----VILPPVFFFVVDACCDEEE---LTALKDS 144 (755)
T ss_pred cceecCCCCCChhhcC-CCc------ccCCccccCCCceEEEEccCC----ccCCceEEEEEEeecCHHH---HHHHHHH
Confidence 9999999999998842 322 2345588 789999999876 3478999999999998777 8899999
Q ss_pred HHHHHhcCCCCCCcEEEEEEeCCeEEEEecCCCCCCceEeecCC--------cccc---c---cC------C-------c
Q 001452 559 ISQVISDLPEGPRTMVGIATFDSTIHFYNLKRALQQPLMLIVPD--------VEDV---Y---TP------L-------Q 611 (1075)
Q Consensus 559 I~~~L~~Lp~~~rt~VGiITFDs~VhfYnl~~~l~qpqmlVvsD--------ldd~---F---vP------l-------~ 611 (1075)
|+..|..++.+ +.||||||.+.||+|.++... ..+-.|++- |++. . .+ + .
T Consensus 145 livslsllppe--aLvglItygt~i~v~el~ae~-~~r~~VF~g~~eyt~~~L~~ll~~~~~~~~~~~es~is~~~~~~~ 221 (755)
T COG5047 145 LIVSLSLLPPE--ALVGLITYGTSIQVHELNAEN-HRRSYVFSGNKEYTKENLQELLALSKPTKSGGFESKISGIGQFAS 221 (755)
T ss_pred HHHHHhcCCcc--ceeeEEEecceeEEEeccccc-cCcceeecchHHHHHHHHHHHhcccCCCCcchhhhhcccccccch
Confidence 99999999976 899999999999999998642 223344431 1111 0 01 0 1
Q ss_pred ccceeehHHhHHHHHHHHhhcCc---cccCCCCccchHHHHHHHHHHHHHh----cCCEEEEEecCCCCcCcccccccc-
Q 001452 612 SDIIVPVSECRQHLELLLESIPS---MFQNNRTAESAFGAAVKAAFLALKS----TGGKLLVFQSVLPSVGIGALSARE- 683 (1075)
Q Consensus 612 ~~lLv~l~esr~~I~~lLd~Lp~---~f~~~~~~~~~lG~AL~aA~~lL~~----~GGkIivF~sg~Pt~GpG~L~~re- 683 (1075)
..|+.++.+|...+.++||+|.. -....++..+|+|+||.+|..+|+. .|+||++|++|+||.|+|.+.++|
T Consensus 222 ~rFl~p~q~ce~~L~n~le~L~pd~~~v~~~~Rp~RCTGsAl~ias~Ll~~~~p~~~~~i~lF~~GPcTvGpG~Vvs~el 301 (755)
T COG5047 222 SRFLLPTQQCEFKLLNILEQLQPDPWPVPAGKRPLRCTGSALNIASSLLEQCFPNAGCHIVLFAGGPCTVGPGTVVSTEL 301 (755)
T ss_pred hhhhccHHHHHHHHHHHHHHhCCCCccCCCCCCCccccchhHHHHHHHHHhhccCcceeEEEEcCCCccccCceeeehhh
Confidence 23788999999999999999953 3456789999999999999999985 699999999999999999999876
Q ss_pred -cccCCCCCCCccccccccchhHHHHHHHHHHHHhcCcEEEEEEecCCccCccccccccccccceEEEEcCCCcccchHH
Q 001452 684 -AEGRSNISSGEKETHKLLQPADKTLKAMAIEFAEYQVCVDVFITTQTYVDIASISVIPKTTGGQVYYYYPFSALSDPAK 762 (1075)
Q Consensus 684 -~~~r~~~~~gt~ke~~ll~pa~~FYk~LA~~~~~~gIsVDlFl~s~~~~DlatL~~La~~TGG~v~~Y~~F~~~~d~~k 762 (1075)
+..|+|+++..|+ .++.+++.+||++||++.+.+|.++|+|+..-++++|-+|..|...|||-+...+.|+.+ .
T Consensus 302 kEpmRshH~ie~d~-aqh~kka~KFY~~laeR~a~~gh~~DifagcldqIGI~eM~~L~~sTgg~lvlsdsF~t~----i 376 (755)
T COG5047 302 KEPMRSHHDIESDS-AQHSKKATKFYKGLAERVANQGHALDIFAGCLDQIGIMEMEPLTTSTGGALVLSDSFTTS----I 376 (755)
T ss_pred cccccccccccccc-hhhccchHHHHHHHHHHHhccchhHHHHHHHHHhhhhhcchhhccCCcceEEEeccccHH----H
Confidence 4678887775544 678999999999999999999999999999999999999999999999999999999754 5
Q ss_pred HHHHHHHhccC------CccccceEEEEeCCCceEEeeeCCccc---------------CCCCceeecCCCCCCeEEEEE
Q 001452 763 LYNDLRWNITR------PQGFEAVMRVRCSQGIQVQEYHGNFCK---------------RIPTDIDLPAIDCNKAIMVTL 821 (1075)
Q Consensus 763 L~~dL~r~Ltr------~~g~~a~mrVR~S~GL~V~~~~Gnf~~---------------rs~~~~~lp~id~dtSi~~el 821 (1075)
|...+.|++.+ ..||+|.|+|.||++|+|++.+||... ..+..|.++.+.+.+++++.|
T Consensus 377 fkqSfqrif~~d~~g~l~~gfNa~m~V~TsKnl~~~g~ig~a~~~~k~~~ni~~~eigi~~t~swkm~slsPk~nyal~f 456 (755)
T COG5047 377 FKQSFQRIFNRDSEGYLKMGFNANMEVKTSKNLKIKGLIGHAVSVKKKANNISDSEIGIGATNSWKMASLSPKSNYALYF 456 (755)
T ss_pred HHHHHHHHhCcCcccchhhhhccceeEeeccCceeeeeecceeeecccccccccccccccccccccccccCCCcceEEEE
Confidence 55666666665 379999999999999999999998542 234579999999999999999
Q ss_pred EecCCCC-----CCCceEEEEEEEEEecCCcEEEEEEecccCCCCC-HHHHHhhcchhHHHHHHHHHHHHhcCCCCHHHH
Q 001452 822 KHDDKLQ-----DGSECAFQCALLYTTVYGQRRIRVTTLSLPCTSN-LSNLYRSADLDTQFTCFMKQAASEIPSTPLANV 895 (1075)
Q Consensus 822 ~~d~~L~-----~~~~~~fQ~AlLYTt~~GeRrIRV~Tl~lpVts~-l~~vf~~aD~dai~~~laK~a~~~~l~~~l~d~ 895 (1075)
++...-. ....+|+|+...|.+++|.-||||.|++.-.++. ...+++++|+||.++++||+|+.++......|+
T Consensus 457 ei~~~~~~~~~~~~~~a~iQfiT~yQhss~t~riRVtTvar~f~~~~~p~i~~SFdqEaaaV~~aR~a~~K~~~ed~~Dv 536 (755)
T COG5047 457 EIALGAASGSAQRPAEAYIQFITTYQHSSGTYRIRVTTVARMFTDGGLPKINRSFDQEAAAVFMARIAAFKAETEDIIDV 536 (755)
T ss_pred EeccccCCCccCCcccchhhhhhhhhccCCcEEEEEeehhhhhccCCChhhhhcchhhHHHHHHHHHHHhhcccccchhH
Confidence 8775332 2257999999999999999999999999777754 556888999999999999999999988888999
Q ss_pred HHHHHHHHHHHHHHHHhhcccCCCCCcccchhhcchHHHHHHHhhcccCCC-CCCCchHHHHHHHHHcCCChhhhccccc
Q 001452 896 REQMMNLCVNALVSYRKFCATVSSSGQLILPEALKLLPLYTLALIKSTGLR-TDGRIDDRSFWITYVSSVSIPFAVPFVY 974 (1075)
Q Consensus 896 R~~L~~~lv~iL~~YRk~ca~~~s~gqLiLPesLklLPlyil~LlKS~~Lr-~~~s~DeR~~~~~~l~s~~v~~~~~~lY 974 (1075)
-+|++..++++.+.|..+-... +..+.|+.++.++|.|+|+|+||+.|. .|.++||+++++|+|.+.++.+++.|+.
T Consensus 537 ~rw~dr~lirlcq~fa~y~k~d--pssfrl~~~f~lypqf~y~lrRSpfL~vfNnSPDEt~fyrh~l~~~dv~~sLimiq 614 (755)
T COG5047 537 FRWIDRNLIRLCQKFADYRKDD--PSSFRLDPNFTLYPQFMYHLRRSPFLSVFNNSPDETAFYRHMLNNADVNDSLIMIQ 614 (755)
T ss_pred HHHHHHHHHHHHHHHHhcCCCC--chhhcCCcchhhhhHHHhhhhccceeeccCCCcchHHHHHHHHhcccccchhhhhc
Confidence 9999999888887776655433 345789999999999999999999999 8999999999999999999999999999
Q ss_pred ceEEEeccCCCCCCCCCCCCcccCccccccCCcEEEEEcCCeEEEEeCCCCCH
Q 001452 975 PRMVAIHDLDKGEDGSIIPPFLPLSSEHVSDEGIYLLENGEDALIYIGSSVDS 1027 (1075)
Q Consensus 975 PrL~~lh~l~~~d~~~~lP~~l~LS~e~L~~~GiYLLD~G~~i~LwvG~~v~p 1027 (1075)
|.|.++|... | ..++-|+.-++++|-|+|||+.++|+||-|+.+..
T Consensus 615 PtL~Sys~~~---~----~~pVlLDs~svkpdviLLlDtff~Ili~hG~~iaq 660 (755)
T COG5047 615 PTLQSYSFEK---G----GVPVLLDSVSVKPDVILLLDTFFHILIFHGSYIAQ 660 (755)
T ss_pred chheeeeccC---C----CceEEEeccccCCCeEEEeeceeEEEEECChHHHH
Confidence 9999999753 1 34678888899999999999999999999998764
No 8
>cd01479 Sec24-like Sec24-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles. The two main classes of vesicular carriers within the endocytic and the biosynthetic pathways are COP- and clathrin-coated vesicles. Formation of COPII vesicles requires the ordered assembly of the coat built from several cytosolic components GTPase Sar1, complexes of Sec23-Sec24 and Sec13-Sec31. The process is initiated by the conversion of GDP to GTP by the GTPase Sar1 which then recruits the heterodimeric complex of Sec23 and Sec24. This heterodimeric complex generates the pre-budding complex. The final step leading to membrane deformation and budding of COPII-coated vesicles is carried by the heterodimeric complex Sec13-Sec31. The members of this CD belong to the Sec23-like family. Sec 24 is very similar to Sec23. The Sec23 and Sec24
Probab=100.00 E-value=1e-53 Score=464.95 Aligned_cols=241 Identities=47% Similarity=0.800 Sum_probs=231.3
Q ss_pred CCCcEEEEEEEcchhHHhhhHHHHHHHHHHHHHhcCCCC-CCcEEEEEEeCCeEEEEecCCCCCCceEeecCCccccccC
Q 001452 531 PMPAVFFFLIDVSMNALQTGATAAACSAISQVISDLPEG-PRTMVGIATFDSTIHFYNLKRALQQPLMLIVPDVEDVYTP 609 (1075)
Q Consensus 531 p~pp~yvFvIDvS~~av~sG~l~~v~~aI~~~L~~Lp~~-~rt~VGiITFDs~VhfYnl~~~l~qpqmlVvsDldd~FvP 609 (1075)
|+||+||||||||..++++|+++.+|++|+++|+.|+++ +|++|||||||+.||||+++..+.+++|+|++|++|+|+|
T Consensus 1 p~pp~~~FvIDvs~~a~~~g~~~~~~~si~~~L~~lp~~~~~~~VgiITfd~~v~~y~l~~~~~~~q~~vv~dl~d~f~P 80 (244)
T cd01479 1 PQPAVYVFLIDVSYNAIKSGLLATACEALLSNLDNLPGDDPRTRVGFITFDSTLHFFNLKSSLEQPQMMVVSDLDDPFLP 80 (244)
T ss_pred CCCCEEEEEEEccHHHHhhChHHHHHHHHHHHHHhcCCCCCCeEEEEEEECCeEEEEECCCCCCCCeEEEeeCcccccCC
Confidence 579999999999999999999999999999999999987 8999999999999999999998889999999999999999
Q ss_pred CcccceeehHHhHHHHHHHHhhcCccccCCCCccchHHHHHHHHHHHHHhcCCEEEEEecCCCCcCcccccccccccCCC
Q 001452 610 LQSDIIVPVSECRQHLELLLESIPSMFQNNRTAESAFGAAVKAAFLALKSTGGKLLVFQSVLPSVGIGALSAREAEGRSN 689 (1075)
Q Consensus 610 l~~~lLv~l~esr~~I~~lLd~Lp~~f~~~~~~~~~lG~AL~aA~~lL~~~GGkIivF~sg~Pt~GpG~L~~re~~~r~~ 689 (1075)
++++||++++|+++.|+++||+|++++.++++.++|+|+||++|..+|+..||||++|++|+||+|+|+|+.|++.+
T Consensus 81 ~~~~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~c~G~Al~~A~~lL~~~GGkIi~f~s~~pt~GpG~l~~~~~~~--- 157 (244)
T cd01479 81 LPDGLLVNLKESRQVIEDLLDQIPEMFQDTKETESALGPALQAAFLLLKETGGKIIVFQSSLPTLGAGKLKSREDPK--- 157 (244)
T ss_pred CCcceeecHHHHHHHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHhcCCEEEEEeCCCCCcCCcccccCcccc---
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998644
Q ss_pred CCCCccccccccchhHHHHHHHHHHHHhcCcEEEEEEecCCccCccccccccccccceEEEEc--CCCcccchHHHHHHH
Q 001452 690 ISSGEKETHKLLQPADKTLKAMAIEFAEYQVCVDVFITTQTYVDIASISVIPKTTGGQVYYYY--PFSALSDPAKLYNDL 767 (1075)
Q Consensus 690 ~~~gt~ke~~ll~pa~~FYk~LA~~~~~~gIsVDlFl~s~~~~DlatL~~La~~TGG~v~~Y~--~F~~~~d~~kL~~dL 767 (1075)
.+++++|+++++++++||++||.+|+++||+||+|+++.+|+|+++|+.|+++|||.+++|+ +|+..+|.+||++||
T Consensus 158 -~~~~~~e~~~~~p~~~fY~~la~~~~~~~isvDlF~~~~~~~dla~l~~l~~~TGG~v~~y~~~~~~~~~d~~kl~~dl 236 (244)
T cd01479 158 -LLSTDKEKQLLQPQTDFYKKLALECVKSQISVDLFLFSNQYVDVATLGCLSRLTGGQVYYYPSFNFSAPNDVEKLVNEL 236 (244)
T ss_pred -ccCchhhhhhcCcchHHHHHHHHHHHHcCeEEEEEEccCcccChhhhhhhhhhcCceEEEECCccCCchhhHHHHHHHH
Confidence 56678888999999999999999999999999999999999999999999999999999999 888888999999999
Q ss_pred HHhccCCc
Q 001452 768 RWNITRPQ 775 (1075)
Q Consensus 768 ~r~Ltr~~ 775 (1075)
+|+|+|++
T Consensus 237 ~~~ltr~~ 244 (244)
T cd01479 237 ARYLTRKI 244 (244)
T ss_pred HHHhcccC
Confidence 99999874
No 9
>cd01468 trunk_domain trunk domain. COPII-coated vesicles carry proteins from the endoplasmic reticulum to the Golgi complex. This vesicular transport can be reconstituted by using three cytosolic components containing five proteins: the small GTPase Sar1p, the Sec23p/24p complex, and the Sec13p/Sec31p complex. This domain is known as the trunk domain and has an alpha/beta vWA fold and forms the dimer interface. Some members of this family possess a partial MIDAS motif that is a characteristic feature of most vWA domain proteins.
Probab=100.00 E-value=7.8e-50 Score=433.31 Aligned_cols=235 Identities=43% Similarity=0.748 Sum_probs=224.9
Q ss_pred CCCcEEEEEEEcchhHHhhhHHHHHHHHHHHHHhcCCCCCCcEEEEEEeCCeEEEEecCCCCCCceEeecCCccccccCC
Q 001452 531 PMPAVFFFLIDVSMNALQTGATAAACSAISQVISDLPEGPRTMVGIATFDSTIHFYNLKRALQQPLMLIVPDVEDVYTPL 610 (1075)
Q Consensus 531 p~pp~yvFvIDvS~~av~sG~l~~v~~aI~~~L~~Lp~~~rt~VGiITFDs~VhfYnl~~~l~qpqmlVvsDldd~FvPl 610 (1075)
|+||+||||||+|.+|+++|+++.+|++|+++|+.|+++++++|||||||++||||++++...+++|+|++|++|+|+|.
T Consensus 1 p~pp~~vFvID~s~~ai~~~~l~~~~~sl~~~l~~lp~~~~~~igiITf~~~V~~~~~~~~~~~~~~~v~~dl~d~f~p~ 80 (239)
T cd01468 1 PQPPVFVFVIDVSYEAIKEGLLQALKESLLASLDLLPGDPRARVGLITYDSTVHFYNLSSDLAQPKMYVVSDLKDVFLPL 80 (239)
T ss_pred CCCCEEEEEEEcchHhccccHHHHHHHHHHHHHHhCCCCCCcEEEEEEeCCeEEEEECCCCCCCCeEEEeCCCccCcCCC
Confidence 68999999999999999999999999999999999997778999999999999999999887778999999999999999
Q ss_pred cccceeehHHhHHHHHHHHhhcCccccC--CCCccchHHHHHHHHHHHHHhc--CCEEEEEecCCCCcCccccccccccc
Q 001452 611 QSDIIVPVSECRQHLELLLESIPSMFQN--NRTAESAFGAAVKAAFLALKST--GGKLLVFQSVLPSVGIGALSAREAEG 686 (1075)
Q Consensus 611 ~~~lLv~l~esr~~I~~lLd~Lp~~f~~--~~~~~~~lG~AL~aA~~lL~~~--GGkIivF~sg~Pt~GpG~L~~re~~~ 686 (1075)
++++|++++|+++.|+++|++|+.++.. +++.++|+|+||++|..+|+.. ||||++|++|+||+|+|+|+.|++..
T Consensus 81 ~~~~l~~~~e~~~~i~~~l~~l~~~~~~~~~~~~~~~~G~Al~~A~~ll~~~~~gGkI~~f~sg~pt~GpG~l~~~~~~~ 160 (239)
T cd01468 81 PDRFLVPLSECKKVIHDLLEQLPPMFWPVPTHRPERCLGPALQAAFLLLKGTFAGGRIIVFQGGLPTVGPGKLKSREDKE 160 (239)
T ss_pred cCceeeeHHHHHHHHHHHHHhhhhhccccCCCCCcccHHHHHHHHHHHHhhcCCCceEEEEECCCCCCCCCccccCcccc
Confidence 9999999999999999999999999887 8899999999999999999998 99999999999999999999997654
Q ss_pred CCCCCCCccccccccchhHHHHHHHHHHHHhcCcEEEEEEecCCccCccccccccccccceEEEEcCCCcccchHHHHHH
Q 001452 687 RSNISSGEKETHKLLQPADKTLKAMAIEFAEYQVCVDVFITTQTYVDIASISVIPKTTGGQVYYYYPFSALSDPAKLYND 766 (1075)
Q Consensus 687 r~~~~~gt~ke~~ll~pa~~FYk~LA~~~~~~gIsVDlFl~s~~~~DlatL~~La~~TGG~v~~Y~~F~~~~d~~kL~~d 766 (1075)
.+++++|+++++++++||++||++|++++|+||+|+++.+++|+++|+.|++.|||.+++|++|+..+|.++|.+|
T Consensus 161 ----~~~~~~e~~~~~~a~~fY~~la~~~~~~~isvdlF~~~~~~~dl~~l~~l~~~TGG~v~~y~~f~~~~~~~~~~~~ 236 (239)
T cd01468 161 ----PIRSHDEAQLLKPATKFYKSLAKECVKSGICVDLFAFSLDYVDVATLKQLAKSTGGQVYLYDSFQAPNDGSKFKQD 236 (239)
T ss_pred ----cCCCccchhcccccHHHHHHHHHHHHHcCeEEEEEeccccccCHHHhhhhhhcCCceEEEeCCCCCcccHHHHHHH
Confidence 5667899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHH
Q 001452 767 LRW 769 (1075)
Q Consensus 767 L~r 769 (1075)
|+|
T Consensus 237 l~r 239 (239)
T cd01468 237 LQR 239 (239)
T ss_pred hcC
Confidence 875
No 10
>PF04811 Sec23_trunk: Sec23/Sec24 trunk domain; InterPro: IPR006896 COPII (coat protein complex II)-coated vesicles carry proteins from the endoplasmic reticulum (ER) to the Golgi complex []. COPII-coated vesicles form on the ER by the stepwise recruitment of three cytosolic components: Sar1-GTP to initiate coat formation, Sec23/24 heterodimer to select SNARE and cargo molecules, and Sec13/31 to induce coat polymerisation and membrane deformation []. Sec23 p and Sec24p are structurally related, folding into five distinct domains: a beta-barrel, a zinc-finger (IPR006895 from INTERPRO), an alpha/beta trunk domain, an all-helical region (IPR006900 from INTERPRO), and a C-terminal gelsolin-like domain (IPR007123 from INTERPRO). This entry describes the Sec23/24 alpha/beta trunk domain, which is formed from a single, approximately 250-residue segment plugged into the beta-barrel between strands beta-1 and beta-19. The trunk has an alpha/beta fold with a vWA topology, and it forms the dimer interface, primarily involving strand beta-14 on Sec23 and Sec24; in addition, the trunk domain of Sec23 contacts Sar1.; GO: 0006886 intracellular protein transport, 0006888 ER to Golgi vesicle-mediated transport, 0030127 COPII vesicle coat; PDB: 3EGD_A 2NUP_A 3EG9_A 3EFO_A 3EGX_A 2NUT_A 1PD0_A 1PD1_A 1M2V_B 1PCX_A ....
Probab=100.00 E-value=1.4e-49 Score=432.11 Aligned_cols=237 Identities=41% Similarity=0.724 Sum_probs=205.7
Q ss_pred CCCcEEEEEEEcchhHHhhhHHHHHHHHHHHHHhcCCCCCCcEEEEEEeCCeEEEEecCCCCCCceEeecCCccccccCC
Q 001452 531 PMPAVFFFLIDVSMNALQTGATAAACSAISQVISDLPEGPRTMVGIATFDSTIHFYNLKRALQQPLMLIVPDVEDVYTPL 610 (1075)
Q Consensus 531 p~pp~yvFvIDvS~~av~sG~l~~v~~aI~~~L~~Lp~~~rt~VGiITFDs~VhfYnl~~~l~qpqmlVvsDldd~FvPl 610 (1075)
|+||+||||||+|.+|+++|+++.+|++|+++|+.|+.+++++|||||||++||||+++....+++|+|++|+||+|+|+
T Consensus 1 P~pp~y~FvID~s~~av~~g~~~~~~~sl~~~l~~l~~~~~~~vgiitfd~~V~~y~l~~~~~~~~~~v~~dl~~~~~p~ 80 (243)
T PF04811_consen 1 PQPPVYVFVIDVSYEAVQSGLLQSLIESLKSALDSLPGDERTRVGIITFDSSVHFYNLSSSLSQPQMIVVSDLDDPFIPL 80 (243)
T ss_dssp -S--EEEEEEE-SHHHHHHTHHHHHHHHHHHHGCTSSTSTT-EEEEEEESSSEEEEETTTTSSSTEEEEEHHTTSHHSST
T ss_pred CCCCEEEEEEECchhhhhccHHHHHHHHHHHHHHhccCCCCcEEEEEEeCCEEEEEECCCCcCCCcccchHHHhhcccCC
Confidence 68999999999999999999999999999999999997778999999999999999999988889999999999999999
Q ss_pred cccceeehHHhHHHHHHHHhhcCccccCC--CCccchHHHHHHHHHHHHH--hcCCEEEEEecCCCCcCc-ccccccccc
Q 001452 611 QSDIIVPVSECRQHLELLLESIPSMFQNN--RTAESAFGAAVKAAFLALK--STGGKLLVFQSVLPSVGI-GALSAREAE 685 (1075)
Q Consensus 611 ~~~lLv~l~esr~~I~~lLd~Lp~~f~~~--~~~~~~lG~AL~aA~~lL~--~~GGkIivF~sg~Pt~Gp-G~L~~re~~ 685 (1075)
+++||+++.|+++.|+++|++|++++... ++.++|+|+||++|..+|+ ..||||++|++++||+|+ |+|+.+++.
T Consensus 81 ~~~llv~~~e~~~~i~~ll~~L~~~~~~~~~~~~~~c~G~Al~~A~~ll~~~~~gGkI~~F~s~~pt~G~Gg~l~~~~~~ 160 (243)
T PF04811_consen 81 PDGLLVPLSECRDAIEELLESLPSIFPETAGKRPERCLGSALSAALSLLSSRNTGGKILVFTSGPPTYGPGGSLKKREDS 160 (243)
T ss_dssp SSSSSEETTTCHHHHHHHHHHHHHHSTT-TTB-----HHHHHHHHHHHHHHHTS-EEEEEEESS---SSSTTSS-SBTTS
T ss_pred cccEEEEhHHhHHHHHHHHHHhhhhcccccccCccccHHHHHHHHHHHHhccccCCEEEEEeccCCCCCCCceecccccc
Confidence 99999999999999999999999988876 8899999999999999999 899999999999999999 788888765
Q ss_pred cCCCCCCCcccc-ccccchhHHHHHHHHHHHHhcCcEEEEEEecCCccCccccccccccccceEEEEcCCCcccchHHHH
Q 001452 686 GRSNISSGEKET-HKLLQPADKTLKAMAIEFAEYQVCVDVFITTQTYVDIASISVIPKTTGGQVYYYYPFSALSDPAKLY 764 (1075)
Q Consensus 686 ~r~~~~~gt~ke-~~ll~pa~~FYk~LA~~~~~~gIsVDlFl~s~~~~DlatL~~La~~TGG~v~~Y~~F~~~~d~~kL~ 764 (1075)
. .+++++| +.++.++++||++||++|+++||+||+|+++.+++|+++|+.|++.|||.++||++|+.++|.++|+
T Consensus 161 ~----~~~~~~~~~~~~~~~~~fY~~la~~~~~~~isvDlf~~~~~~~~l~tl~~l~~~TGG~l~~y~~f~~~~~~~~l~ 236 (243)
T PF04811_consen 161 S----HYDTEKEKALLLPPANEFYKKLAEECSKQGISVDLFVFSSDYVDLATLGPLARYTGGSLYYYPNFNAERDGEKLR 236 (243)
T ss_dssp C----CCCHCTTHHCHSHSSSHHHHHHHHHHHHCTEEEEEEEECSS--SHHHHTHHHHCTT-EEEEETTTTCHHHHHHHH
T ss_pred c----ccccccchhhhccccchHHHHHHHHHHhcCCEEEEEeecCCCCCcHhHHHHHHhCceeEEEeCCCCCchhHHHHH
Confidence 4 5566666 6678888899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhc
Q 001452 765 NDLRWNI 771 (1075)
Q Consensus 765 ~dL~r~L 771 (1075)
+||.|++
T Consensus 237 ~dl~r~~ 243 (243)
T PF04811_consen 237 QDLKRLV 243 (243)
T ss_dssp HHHHHHH
T ss_pred HHHHHhC
Confidence 9999974
No 11
>cd01478 Sec23-like Sec23-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles. The two main classes of vesicular carriers within the endocytic and the biosynthetic pathways are COP- and clathrin-coated vesicles. Formation of COPII vesicles requires the ordered assembly of the coat built from several cytosolic components GTPase Sar1, complexes of Sec23-Sec24 and Sec13-Sec31. The process is initiated by the conversion of GDP to GTP by the GTPase Sar1 which then recruits the heterodimeric complex of Sec23 and Sec24. This heterodimeric complex generates the pre-budding complex. The final step leading to membrane deformation and budding of COPII-coated vesicles is carried by the heterodimeric complex Sec13-Sec31. The members of this CD belong to the Sec23-like family. Sec 23 is very similar to Sec24. The Sec23 and Sec24
Probab=100.00 E-value=4e-43 Score=385.94 Aligned_cols=227 Identities=25% Similarity=0.354 Sum_probs=194.5
Q ss_pred CCCcEEEEEEEcchhHHhhhHHHHHHHHHHHHHhcCCCCCCcEEEEEEeCCeEEEEecCCCC---------------CCc
Q 001452 531 PMPAVFFFLIDVSMNALQTGATAAACSAISQVISDLPEGPRTMVGIATFDSTIHFYNLKRAL---------------QQP 595 (1075)
Q Consensus 531 p~pp~yvFvIDvS~~av~sG~l~~v~~aI~~~L~~Lp~~~rt~VGiITFDs~VhfYnl~~~l---------------~qp 595 (1075)
|.||+||||||+|..+++ ++.++++|+++|+.||++ ++|||||||++||||||+... ++.
T Consensus 1 p~pp~~vFviDvs~~~~e---l~~l~~sl~~~L~~lP~~--a~VGlITfd~~V~~~~L~~~~~~~~~vf~g~~~~~~~~~ 75 (267)
T cd01478 1 TSPPVFLFVVDTCMDEEE---LDALKESLIMSLSLLPPN--ALVGLITFGTMVQVHELGFEECSKSYVFRGNKDYTAKQI 75 (267)
T ss_pred CCCCEEEEEEECccCHHH---HHHHHHHHHHHHHhCCCC--CEEEEEEECCEEEEEEcCCCcCceeeeccCCccCCHHHH
Confidence 578999999999999998 778899999999999986 899999999999999998541 111
Q ss_pred -eEe------------ecCCccccccCCc-ccceeehHHhHHHHHHHHhhcCcc---ccCCCCccchHHHHHHHHHHHHH
Q 001452 596 -LML------------IVPDVEDVYTPLQ-SDIIVPVSECRQHLELLLESIPSM---FQNNRTAESAFGAAVKAAFLALK 658 (1075)
Q Consensus 596 -qml------------VvsDldd~FvPl~-~~lLv~l~esr~~I~~lLd~Lp~~---f~~~~~~~~~lG~AL~aA~~lL~ 658 (1075)
+|+ +.+|++|.|+|.+ ++||++++||++.|+++||+|+.+ +.++++.++|+|+||++|..+|+
T Consensus 76 ~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~flvpl~e~~~~i~~lLe~L~~~~~~~~~~~r~~r~~G~Al~~A~~ll~ 155 (267)
T cd01478 76 QDMLGLGGPAMRPSASQHPGAGNPLPSAAASRFLLPVSQCEFTLTDLLEQLQPDPWPVPAGHRPLRCTGVALSIAVGLLE 155 (267)
T ss_pred HHHhccccccccccccCcCCccccccccccccEEEEHHHHHHHHHHHHHhCcccccccCCCCCCCCchHHHHHHHHHHHH
Confidence 122 2245788999976 689999999999999999999876 46678899999999999999998
Q ss_pred ----hcCCEEEEEecCCCCcCcccccccccc--cCCCCCCCcccc-ccccchhHHHHHHHHHHHHhcCcEEEEEEecCCc
Q 001452 659 ----STGGKLLVFQSVLPSVGIGALSAREAE--GRSNISSGEKET-HKLLQPADKTLKAMAIEFAEYQVCVDVFITTQTY 731 (1075)
Q Consensus 659 ----~~GGkIivF~sg~Pt~GpG~L~~re~~--~r~~~~~gt~ke-~~ll~pa~~FYk~LA~~~~~~gIsVDlFl~s~~~ 731 (1075)
..||||++|++|+||+|+|+|+.|+.. .|+|. +.+++ .++++++++||++||.+|+++||+||+|+++.+|
T Consensus 156 ~~~~~~gGki~~F~sg~pT~GpG~l~~r~~~~~~r~~~--d~~~~~~~~~~~a~~fY~~la~~~~~~~vsvDlF~~s~d~ 233 (267)
T cd01478 156 ACFPNTGARIMLFAGGPCTVGPGAVVSTELKDPIRSHH--DIDKDNAKYYKKAVKFYDSLAKRLAANGHAVDIFAGCLDQ 233 (267)
T ss_pred hhcCCCCcEEEEEECCCCCCCCceeecccccccccccc--ccccchhhhhhhHHHHHHHHHHHHHhCCeEEEEEeccccc
Confidence 579999999999999999999998643 33332 22333 4699999999999999999999999999999999
Q ss_pred cCccccccccccccceEEEEcCCCcccchHHHHHHHH
Q 001452 732 VDIASISVIPKTTGGQVYYYYPFSALSDPAKLYNDLR 768 (1075)
Q Consensus 732 ~DlatL~~La~~TGG~v~~Y~~F~~~~d~~kL~~dL~ 768 (1075)
+||++|+.|++.|||.+|+|+.|+.+ .|.+.|+
T Consensus 234 vglaem~~l~~~TGG~v~~~~~f~~~----~f~~s~~ 266 (267)
T cd01478 234 VGLLEMKVLVNSTGGHVVLSDSFTTS----IFKQSFQ 266 (267)
T ss_pred cCHHHHHHHHHhcCcEEEEeCCcchH----HHHHHhc
Confidence 99999999999999999999999753 4555544
No 12
>PF04815 Sec23_helical: Sec23/Sec24 helical domain; InterPro: IPR006900 COPII (coat protein complex II)-coated vesicles carry proteins from the endoplasmic reticulum (ER) to the Golgi complex []. COPII-coated vesicles form on the ER by the stepwise recruitment of three cytosolic components: Sar1-GTP to initiate coat formation, Sec23/24 heterodimer to select SNARE and cargo molecules, and Sec13/31 to induce coat polymerisation and membrane deformation []. Sec23 p and Sec24p are structurally related, folding into five distinct domains: a beta-barrel, a zinc-finger (IPR006895 from INTERPRO), an alpha/beta trunk domain (IPR006896 from INTERPRO), an all-helical region, and a C-terminal gelsolin-like domain (IPR007123 from INTERPRO). This entry describes the all-helical domain, which forms an approximately 105-residue segment with the C-terminal 30 residues. The linker between alpha-M and alpha-N contacts Sar1.; GO: 0006886 intracellular protein transport, 0006888 ER to Golgi vesicle-mediated transport, 0030127 COPII vesicle coat; PDB: 3EGD_B 2NUP_B 2NUT_B 3EGX_B 3EH2_C 3EH1_A 3EFO_B 3EG9_B 2QTV_A 1M2O_C ....
Probab=99.85 E-value=1.8e-21 Score=185.42 Aligned_cols=102 Identities=43% Similarity=0.614 Sum_probs=95.9
Q ss_pred hhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcccchhhcchHHHHHHHhhcccCCC-CCCC
Q 001452 872 LDTQFTCFMKQAASEIPSTPLANVREQMMNLCVNALVSYRKFCATVSSSGQLILPEALKLLPLYTLALIKSTGLR-TDGR 950 (1075)
Q Consensus 872 ~dai~~~laK~a~~~~l~~~l~d~R~~L~~~lv~iL~~YRk~ca~~~s~gqLiLPesLklLPlyil~LlKS~~Lr-~~~s 950 (1075)
+||++++++|++++++.+++++++|+.++++|+++|++||++|+..++++||+|||+||+||+|+++|+||++|+ .+++
T Consensus 1 Qda~~~llak~ai~~~~~~~l~~~r~~l~~~~v~il~~Yr~~~~~~~~~~qLilPe~lklLPly~l~llKs~alr~~~v~ 80 (103)
T PF04815_consen 1 QDAITSLLAKQAIDKALSSSLKDARESLDNRLVDILAAYRKNCASSSSSGQLILPESLKLLPLYILALLKSPALRPTNVS 80 (103)
T ss_dssp HHHHHHHHHHHHHHHHCCS-HHHHHHHHHHHHHHHHHHHHHHCTTECCCTEEEEEGGGTTHHHHHHHHHTSTTTSCSTS-
T ss_pred CHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHhhccCCCCchhhhCCHHHHHHHHHHHHHHcchhhcCCCCC
Confidence 689999999999999999999999999999999999999999999998899999999999999999999999999 6999
Q ss_pred chHHHHHHHHHcCCChhhhcccc
Q 001452 951 IDDRSFWITYVSSVSIPFAVPFV 973 (1075)
Q Consensus 951 ~DeR~~~~~~l~s~~v~~~~~~l 973 (1075)
+|||++++++++++++++++.||
T Consensus 81 ~D~R~~~~~~~~~~~~~~~~~~i 103 (103)
T PF04815_consen 81 PDERAYAMHLLLSMPVDSLLRMI 103 (103)
T ss_dssp HHHHHHHHHHHHHS-HHHHHHHH
T ss_pred CcHHHHHHHHHHCCCHHHHHhhC
Confidence 99999999999999999998775
No 13
>PF08033 Sec23_BS: Sec23/Sec24 beta-sandwich domain; InterPro: IPR012990 COPII (coat protein complex II)-coated vesicles carry proteins from the endoplasmic reticulum (ER) to the Golgi complex []. COPII-coated vesicles form on the ER by the stepwise recruitment of three cytosolic components: Sar1-GTP to initiate coat formation, Sec23/24 heterodimer to select SNARE and cargo molecules, and Sec13/31 to induce coat polymerisation and membrane deformation []. Sec23 p and Sec24p are structurally related, folding into five distinct domains: a beta-barrel, a zinc-finger (IPR006895 from INTERPRO), an alpha/beta trunk domain (IPR006896 from INTERPRO), an all-helical region (IPR006900 from INTERPRO), and a C-terminal gelsolin-like domain (IPR007123 from INTERPRO). This entry describes part of the Sec23/24 beta-barrel domain, which is formed from approximately 180 residues from three segments of the polypeptide. The strands of the barrel are oriented roughly parallel to the membrane such that one end of the barrel forms part of the inner surface of the coat and the other end part of the membrane-distal surface. The barrel is constructed from two opposed sheets: a six-stranded beta sheet facing partly towards the zinc finger domain and partly towards the solvent, and a five-stranded beta sheet facing the helical domain.; PDB: 3EFO_B 3EG9_B 1PD0_A 1PD1_A 1M2V_B 1PCX_A 3EH2_C 3EGD_A 2NUP_A 3EGX_A ....
Probab=99.82 E-value=2.3e-20 Score=175.58 Aligned_cols=85 Identities=46% Similarity=0.734 Sum_probs=77.2
Q ss_pred cccceEEEEeCCCceEEeeeCCcccCC---------CCc--eeecCCCCCCeEEEEEEecCCCCCCCceEEEEEEEEEec
Q 001452 776 GFEAVMRVRCSQGIQVQEYHGNFCKRI---------PTD--IDLPAIDCNKAIMVTLKHDDKLQDGSECAFQCALLYTTV 844 (1075)
Q Consensus 776 g~~a~mrVR~S~GL~V~~~~Gnf~~rs---------~~~--~~lp~id~dtSi~~el~~d~~L~~~~~~~fQ~AlLYTt~ 844 (1075)
||+|+||||||+||+|++++||++.++ .+. |.++++++|++|+|+|++++++.....+|||+|++||+.
T Consensus 1 g~~~~l~vr~S~gl~v~~~~G~~~~~~~~s~~~~g~~~~~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~iQ~~~~Yt~~ 80 (96)
T PF08033_consen 1 GFNAVLRVRCSKGLKVSGVIGPCFNRSSVSDNEIGEGDTTRWKLPSLDPDTSFAFEFEIDEDLPNGSQAYIQFALLYTDS 80 (96)
T ss_dssp EEEEEEEEEE-TTEEEEEEESSSEESSTBESSECSBSSCSEEEEEEEETT--EEEEEEESSBTBTTSEEEEEEEEEEEET
T ss_pred CceEEEEEEECCCeEEEEEEcCccccccccceeeccCCccEEEecccCCCCEEEEEEEECCCCCCCCeEEEEEEEEEECC
Confidence 799999999999999999999998876 455 999999999999999999999887889999999999999
Q ss_pred CCcEEEEEEecccCCC
Q 001452 845 YGQRRIRVTTLSLPCT 860 (1075)
Q Consensus 845 ~GeRrIRV~Tl~lpVt 860 (1075)
+|+|||||+|++++||
T Consensus 81 ~G~r~iRV~T~~l~vt 96 (96)
T PF08033_consen 81 NGERRIRVTTLSLPVT 96 (96)
T ss_dssp TSEEEEEEEEEEEEEE
T ss_pred CCCEEEEEEeeccccC
Confidence 9999999999999985
No 14
>PF04810 zf-Sec23_Sec24: Sec23/Sec24 zinc finger; InterPro: IPR006895 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. COPII (coat protein complex II)-coated vesicles carry proteins from the endoplasmic reticulum (ER) to the Golgi complex []. COPII-coated vesicles form on the ER by the stepwise recruitment of three cytosolic components: Sar1-GTP to initiate coat formation, Sec23/24 heterodimer to select SNARE and cargo molecules, and Sec13/31 to induce coat polymerisation and membrane deformation []. Sec23 p and Sec24p are structurally related, folding into five distinct domains: a beta-barrel, a zinc-finger, an alpha/beta trunk domain (IPR006896 from INTERPRO), an all-helical region (IPR006900 from INTERPRO), and a C-terminal gelsolin-like domain (IPR007123 from INTERPRO). This entry describes an approximately 55-residue Sec23/24 zinc-binding domain, which lies against the beta-barrel at the periphery of the complex. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006886 intracellular protein transport, 0006888 ER to Golgi vesicle-mediated transport, 0030127 COPII vesicle coat; PDB: 3EFO_B 3EG9_B 3EGD_A 2YRC_A 2NUP_A 2YRD_A 3EGX_A 2NUT_A 3EH1_A 1PD0_A ....
Probab=99.50 E-value=6.7e-15 Score=116.69 Aligned_cols=40 Identities=53% Similarity=1.280 Sum_probs=29.2
Q ss_pred CCcccCCCCceecCceEEEecCCeEEecCCCCCCCCCccc
Q 001452 455 GPVRCSRCKAYINPFMKFIDQGRRFICSLCGFTDETPRDY 494 (1075)
Q Consensus 455 ~pvRC~rCrAYiNPf~~f~~~G~~W~Cn~C~~~N~vP~~Y 494 (1075)
+|+||++|+||||||++|+++|++|+|+||++.|++|.+|
T Consensus 1 ~p~rC~~C~aylNp~~~~~~~~~~w~C~~C~~~N~lp~~Y 40 (40)
T PF04810_consen 1 GPVRCRRCRAYLNPFCQFDDGGKTWICNFCGTKNPLPPHY 40 (40)
T ss_dssp -S-B-TTT--BS-TTSEEETTTTEEEETTT--EEE--GGG
T ss_pred CccccCCCCCEECCcceEcCCCCEEECcCCCCcCCCCCCC
Confidence 4899999999999999999999999999999999999887
No 15
>PRK13685 hypothetical protein; Provisional
Probab=98.74 E-value=1.6e-07 Score=107.37 Aligned_cols=173 Identities=20% Similarity=0.249 Sum_probs=120.7
Q ss_pred cEEEEEEEcchhHHhh----hHHHHHHHHHHHHHhcCCCCCCcEEEEEEeCCeEEEEecCCCCCCceEeecCCccccccC
Q 001452 534 AVFFFLIDVSMNALQT----GATAAACSAISQVISDLPEGPRTMVGIATFDSTIHFYNLKRALQQPLMLIVPDVEDVYTP 609 (1075)
Q Consensus 534 p~yvFvIDvS~~av~s----G~l~~v~~aI~~~L~~Lp~~~rt~VGiITFDs~VhfYnl~~~l~qpqmlVvsDldd~FvP 609 (1075)
-.+|||||+|.++... ..++.+++++++.|+.+..+ .+||+|+|++..++. +|
T Consensus 89 ~~vvlvlD~S~SM~~~D~~p~RL~~ak~~~~~~l~~l~~~--d~vglv~Fa~~a~~~---------------------~p 145 (326)
T PRK13685 89 AVVMLVIDVSQSMRATDVEPNRLAAAQEAAKQFADELTPG--INLGLIAFAGTATVL---------------------VS 145 (326)
T ss_pred ceEEEEEECCccccCCCCCCCHHHHHHHHHHHHHHhCCCC--CeEEEEEEcCceeec---------------------CC
Confidence 4689999999997542 36889999999999998543 589999998765421 11
Q ss_pred CcccceeehHHhHHHHHHHHhhcCccccCCCCccchHHHHHHHHHHHHHhc-----------CCEEEEEecCCCCcCccc
Q 001452 610 LQSDIIVPVSECRQHLELLLESIPSMFQNNRTAESAFGAAVKAAFLALKST-----------GGKLLVFQSVLPSVGIGA 678 (1075)
Q Consensus 610 l~~~lLv~l~esr~~I~~lLd~Lp~~f~~~~~~~~~lG~AL~aA~~lL~~~-----------GGkIivF~sg~Pt~GpG~ 678 (1075)
+.++++.+.+.|+.|.. ...+++|.||..|++.++.. .++|+++++|.-+.|...
T Consensus 146 --------~t~d~~~l~~~l~~l~~------~~~T~~g~al~~A~~~l~~~~~~~~~~~~~~~~~IILlTDG~~~~~~~~ 211 (326)
T PRK13685 146 --------PTTNREATKNAIDKLQL------ADRTATGEAIFTALQAIATVGAVIGGGDTPPPARIVLMSDGKETVPTNP 211 (326)
T ss_pred --------CCCCHHHHHHHHHhCCC------CCCcchHHHHHHHHHHHHhhhcccccccCCCCCEEEEEcCCCCCCCCCC
Confidence 12356777888888853 34577899999998887621 367999999876544210
Q ss_pred ccccccccCCCCCCCccccccccchhHHHHHHHHHHHHhcCcEEEEEEecCC-------------ccCcccccccccccc
Q 001452 679 LSAREAEGRSNISSGEKETHKLLQPADKTLKAMAIEFAEYQVCVDVFITTQT-------------YVDIASISVIPKTTG 745 (1075)
Q Consensus 679 L~~re~~~r~~~~~gt~ke~~ll~pa~~FYk~LA~~~~~~gIsVDlFl~s~~-------------~~DlatL~~La~~TG 745 (1075)
. + .+ .. .+.++.+.+.||.|+++.+..+ ..|-..|..+++.||
T Consensus 212 ~----~-----------~~-------~~--~~aa~~a~~~gi~i~~Ig~G~~~g~~~~~g~~~~~~~d~~~L~~iA~~tg 267 (326)
T PRK13685 212 D----N-----------PR-------GA--YTAARTAKDQGVPISTISFGTPYGSVEINGQRQPVPVDDESLKKIAQLSG 267 (326)
T ss_pred C----C-----------cc-------cH--HHHHHHHHHcCCeEEEEEECCCCCCcCcCCceeeecCCHHHHHHHHHhcC
Confidence 0 0 00 00 2456667889999999999874 257789999999999
Q ss_pred ceEEEEcCCCcccchHHHHHHHHHh
Q 001452 746 GQVYYYYPFSALSDPAKLYNDLRWN 770 (1075)
Q Consensus 746 G~v~~Y~~F~~~~d~~kL~~dL~r~ 770 (1075)
|+.|+..+- .+-++.+++|.+.
T Consensus 268 G~~~~~~~~---~~L~~if~~I~~~ 289 (326)
T PRK13685 268 GEFYTAASL---EELRAVYATLQQQ 289 (326)
T ss_pred CEEEEcCCH---HHHHHHHHHHHHH
Confidence 988876541 2344555555543
No 16
>cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme. Orthologues of these genes are found in all completed eukaryotic genomes and all these proteins contain a VWA domain. The p44 subunit of TFIIH functions as a DNA helicase in RNA polymerase II transcription initiation and DNA repair, and its transcriptional activity is dependent on its C-terminal Zn-binding domains. The function of the vWA domain is unclear, but may be involved in complex assembly. The MIDAS motif is not conserved in this sub-group.
Probab=98.63 E-value=8e-07 Score=93.51 Aligned_cols=163 Identities=16% Similarity=0.164 Sum_probs=108.6
Q ss_pred EEEEEEEcchhHHhh----hHHHHHHHHHHHHHhcCCC-CCCcEEEEEEe-CCeEEEEecCCCCCCceEeecCCcccccc
Q 001452 535 VFFFLIDVSMNALQT----GATAAACSAISQVISDLPE-GPRTMVGIATF-DSTIHFYNLKRALQQPLMLIVPDVEDVYT 608 (1075)
Q Consensus 535 ~yvFvIDvS~~av~s----G~l~~v~~aI~~~L~~Lp~-~~rt~VGiITF-Ds~VhfYnl~~~l~qpqmlVvsDldd~Fv 608 (1075)
..+|+||+|.++.++ -.++.+++.+.+.++.+.+ ++..+||||+| ++.-|+. +
T Consensus 5 ~ivi~lD~S~SM~a~D~~ptRl~~ak~~~~~fi~~~~~~~~~~~vglv~f~~~~a~~~---------------------~ 63 (183)
T cd01453 5 HLIIVIDCSRSMEEQDLKPSRLAVVLKLLELFIEEFFDQNPISQLGIISIKNGRAEKL---------------------T 63 (183)
T ss_pred EEEEEEECcHHHhcCCCCchHHHHHHHHHHHHHHHHhhcCccccEEEEEEcCCccEEE---------------------E
Confidence 479999999997643 2688888888888876422 34469999999 5443321 1
Q ss_pred CCcccceeehHHhHHHHHHHHhhcCccccCCCCccchHHHHHHHHHHHHHhc----CCEEEEEecCCCCcCccccccccc
Q 001452 609 PLQSDIIVPVSECRQHLELLLESIPSMFQNNRTAESAFGAAVKAAFLALKST----GGKLLVFQSVLPSVGIGALSAREA 684 (1075)
Q Consensus 609 Pl~~~lLv~l~esr~~I~~lLd~Lp~~f~~~~~~~~~lG~AL~aA~~lL~~~----GGkIivF~sg~Pt~GpG~L~~re~ 684 (1075)
|+ ..+.+.+...|+.+ + ....++.++.||+.|...|+.. .++|+++.++.-+..+
T Consensus 64 Pl--------T~D~~~~~~~L~~~--~---~~~G~t~l~~aL~~A~~~l~~~~~~~~~~iiil~sd~~~~~~-------- 122 (183)
T cd01453 64 DL--------TGNPRKHIQALKTA--R---ECSGEPSLQNGLEMALESLKHMPSHGSREVLIIFSSLSTCDP-------- 122 (183)
T ss_pred CC--------CCCHHHHHHHhhcc--c---CCCCchhHHHHHHHHHHHHhcCCccCceEEEEEEcCCCcCCh--------
Confidence 21 11222344455554 1 1234589999999999999752 3568887764211000
Q ss_pred ccCCCCCCCccccccccchhHHHHHHHHHHHHhcCcEEEEEEecCCccCccccccccccccceEEEEcCCCcccchHHHH
Q 001452 685 EGRSNISSGEKETHKLLQPADKTLKAMAIEFAEYQVCVDVFITTQTYVDIASISVIPKTTGGQVYYYYPFSALSDPAKLY 764 (1075)
Q Consensus 685 ~~r~~~~~gt~ke~~ll~pa~~FYk~LA~~~~~~gIsVDlFl~s~~~~DlatL~~La~~TGG~v~~Y~~F~~~~d~~kL~ 764 (1075)
.-+.++++++.+.+|.|+++.+.. ++..|..+|+.|||+.|.-.+ .+.|.
T Consensus 123 ---------------------~~~~~~~~~l~~~~I~v~~IgiG~---~~~~L~~ia~~tgG~~~~~~~------~~~l~ 172 (183)
T cd01453 123 ---------------------GNIYETIDKLKKENIRVSVIGLSA---EMHICKEICKATNGTYKVILD------ETHLK 172 (183)
T ss_pred ---------------------hhHHHHHHHHHHcCcEEEEEEech---HHHHHHHHHHHhCCeeEeeCC------HHHHH
Confidence 112467888999999999999964 467899999999999887543 45666
Q ss_pred HHHHH
Q 001452 765 NDLRW 769 (1075)
Q Consensus 765 ~dL~r 769 (1075)
.-+.+
T Consensus 173 ~~~~~ 177 (183)
T cd01453 173 ELLLE 177 (183)
T ss_pred HHHHh
Confidence 55544
No 17
>cd01467 vWA_BatA_type VWA BatA type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses. In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=98.57 E-value=8.8e-07 Score=91.62 Aligned_cols=155 Identities=21% Similarity=0.240 Sum_probs=104.3
Q ss_pred EEEEEEEcchhHHhh-----hHHHHHHHHHHHHHhcCCCCCCcEEEEEEeCCeEEEEecCCCCCCceEeecCCccccccC
Q 001452 535 VFFFLIDVSMNALQT-----GATAAACSAISQVISDLPEGPRTMVGIATFDSTIHFYNLKRALQQPLMLIVPDVEDVYTP 609 (1075)
Q Consensus 535 ~yvFvIDvS~~av~s-----G~l~~v~~aI~~~L~~Lp~~~rt~VGiITFDs~VhfYnl~~~l~qpqmlVvsDldd~FvP 609 (1075)
-++||||+|.+.-.. -.++.+++.+...+...++ .+||+|+|++.++.. ++
T Consensus 4 ~vv~vlD~S~SM~~~~~~~~~r~~~a~~~~~~~~~~~~~---~~v~lv~f~~~~~~~---------------------~~ 59 (180)
T cd01467 4 DIMIALDVSGSMLAQDFVKPSRLEAAKEVLSDFIDRREN---DRIGLVVFAGAAFTQ---------------------AP 59 (180)
T ss_pred eEEEEEECCcccccccCCCCCHHHHHHHHHHHHHHhCCC---CeEEEEEEcCCeeec---------------------cC
Confidence 479999999986432 1356777777777766543 699999998765321 11
Q ss_pred CcccceeehHHhHHHHHHHHhhcCccccCCCCccchHHHHHHHHHHHHHhc---CCEEEEEecCCCCcCccccccccccc
Q 001452 610 LQSDIIVPVSECRQHLELLLESIPSMFQNNRTAESAFGAAVKAAFLALKST---GGKLLVFQSVLPSVGIGALSAREAEG 686 (1075)
Q Consensus 610 l~~~lLv~l~esr~~I~~lLd~Lp~~f~~~~~~~~~lG~AL~aA~~lL~~~---GGkIivF~sg~Pt~GpG~L~~re~~~ 686 (1075)
+...+..++++|+.|.... ....+.++.||..|.+.+... ...|+++++|.++.|. .
T Consensus 60 --------~~~~~~~~~~~l~~l~~~~---~~g~T~l~~al~~a~~~l~~~~~~~~~iiliTDG~~~~g~--~------- 119 (180)
T cd01467 60 --------LTLDRESLKELLEDIKIGL---AGQGTAIGDAIGLAIKRLKNSEAKERVIVLLTDGENNAGE--I------- 119 (180)
T ss_pred --------CCccHHHHHHHHHHhhhcc---cCCCCcHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCC--C-------
Confidence 1123445566666665211 234577899999999988653 2568888888755321 0
Q ss_pred CCCCCCCccccccccchhHHHHHHHHHHHHhcCcEEEEEEecCC----------ccCccccccccccccceEEEEcC
Q 001452 687 RSNISSGEKETHKLLQPADKTLKAMAIEFAEYQVCVDVFITTQT----------YVDIASISVIPKTTGGQVYYYYP 753 (1075)
Q Consensus 687 r~~~~~gt~ke~~ll~pa~~FYk~LA~~~~~~gIsVDlFl~s~~----------~~DlatL~~La~~TGG~v~~Y~~ 753 (1075)
. ..+.+..+.+.+|.|+.+.+... ..|...|..|++.|||.+|+..+
T Consensus 120 ---------------~-----~~~~~~~~~~~gi~i~~i~ig~~~~~~~~~~~~~~~~~~l~~la~~tgG~~~~~~~ 176 (180)
T cd01467 120 ---------------D-----PATAAELAKNKGVRIYTIGVGKSGSGPKPDGSTILDEDSLVEIADKTGGRIFRALD 176 (180)
T ss_pred ---------------C-----HHHHHHHHHHCCCEEEEEEecCCCCCcCCCCcccCCHHHHHHHHHhcCCEEEEecC
Confidence 0 12234456678999999998872 47888899999999999998754
No 18
>cd01451 vWA_Magnesium_chelatase Magnesium chelatase: Mg-chelatase catalyses the insertion of Mg into protoporphyrin IX (Proto). In chlorophyll biosynthesis, insertion of Mg2+ into protoporphyrin IX is catalysed by magnesium chelatase in an ATP-dependent reaction. Magnesium chelatase is a three sub-unit (BchI, BchD and BchH) enzyme with a novel arrangement of domains: the C-terminal helical domain is located behind the nucleotide binding site. The BchD domain contains a AAA domain at its N-terminus and a VWA domain at its C-terminus. The VWA domain has been speculated to be involved in mediating protein-protein interactions.
Probab=98.51 E-value=2.1e-06 Score=89.55 Aligned_cols=159 Identities=19% Similarity=0.201 Sum_probs=108.4
Q ss_pred EEEEEEEcchhHHhhhHHHHHHHHHHHHHhcCCCCCCcEEEEEEeCCe-EEEEecCCCCCCceEeecCCccccccCCccc
Q 001452 535 VFFFLIDVSMNALQTGATAAACSAISQVISDLPEGPRTMVGIATFDST-IHFYNLKRALQQPLMLIVPDVEDVYTPLQSD 613 (1075)
Q Consensus 535 ~yvFvIDvS~~av~sG~l~~v~~aI~~~L~~Lp~~~rt~VGiITFDs~-VhfYnl~~~l~qpqmlVvsDldd~FvPl~~~ 613 (1075)
.++|+||+|.+.....-++.+++++...++.+.. .+.+||||+|+++ .++. +|
T Consensus 2 ~v~lvlD~SgSM~~~~rl~~ak~a~~~~~~~~~~-~~d~v~lv~F~~~~~~~~---------------------~~---- 55 (178)
T cd01451 2 LVIFVVDASGSMAARHRMAAAKGAVLSLLRDAYQ-RRDKVALIAFRGTEAEVL---------------------LP---- 55 (178)
T ss_pred eEEEEEECCccCCCccHHHHHHHHHHHHHHHhhc-CCCEEEEEEECCCCceEE---------------------eC----
Confidence 3689999999875432567788888887765322 2369999999864 2211 11
Q ss_pred ceeehHHhHHHHHHHHhhcCccccCCCCccchHHHHHHHHHHHHH-h---cC--CEEEEEecCCCCcCcccccccccccC
Q 001452 614 IIVPVSECRQHLELLLESIPSMFQNNRTAESAFGAAVKAAFLALK-S---TG--GKLLVFQSVLPSVGIGALSAREAEGR 687 (1075)
Q Consensus 614 lLv~l~esr~~I~~lLd~Lp~~f~~~~~~~~~lG~AL~aA~~lL~-~---~G--GkIivF~sg~Pt~GpG~L~~re~~~r 687 (1075)
....++.+...|+.++ ....+.++.||..|...++ . .+ ..|+++++|.++.|.. .
T Consensus 56 ----~t~~~~~~~~~l~~l~------~~G~T~l~~aL~~a~~~l~~~~~~~~~~~~ivliTDG~~~~g~~------~--- 116 (178)
T cd01451 56 ----PTRSVELAKRRLARLP------TGGGTPLAAGLLAAYELAAEQARDPGQRPLIVVITDGRANVGPD------P--- 116 (178)
T ss_pred ----CCCCHHHHHHHHHhCC------CCCCCcHHHHHHHHHHHHHHHhcCCCCceEEEEECCCCCCCCCC------c---
Confidence 1112334455666664 2456889999999999882 1 12 4688888888766421 0
Q ss_pred CCCCCCccccccccchhHHHH-HHHHHHHHhcCcEEEEEEecCCccCccccccccccccceEEEEcCCC
Q 001452 688 SNISSGEKETHKLLQPADKTL-KAMAIEFAEYQVCVDVFITTQTYVDIASISVIPKTTGGQVYYYYPFS 755 (1075)
Q Consensus 688 ~~~~~gt~ke~~ll~pa~~FY-k~LA~~~~~~gIsVDlFl~s~~~~DlatL~~La~~TGG~v~~Y~~F~ 755 (1075)
...- .++++++.+.+|.|..+-+...+.|-..|..|++.|||+.|+.++.+
T Consensus 117 -----------------~~~~~~~~~~~l~~~gi~v~~I~~~~~~~~~~~l~~iA~~tgG~~~~~~d~~ 168 (178)
T cd01451 117 -----------------TADRALAAARKLRARGISALVIDTEGRPVRRGLAKDLARALGGQYVRLPDLS 168 (178)
T ss_pred -----------------hhHHHHHHHHHHHhcCCcEEEEeCCCCccCccHHHHHHHHcCCeEEEcCcCC
Confidence 0011 56777888999998777776666788889999999999999987743
No 19
>cd01466 vWA_C3HC4_type VWA C3HC4-type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most,
Probab=98.46 E-value=1.9e-06 Score=87.91 Aligned_cols=147 Identities=16% Similarity=0.208 Sum_probs=104.1
Q ss_pred EEEEEEcchhHHhhhHHHHHHHHHHHHHhcCCCCCCcEEEEEEeCCeEEEEecCCCCCCceEeecCCccccccCCcccce
Q 001452 536 FFFLIDVSMNALQTGATAAACSAISQVISDLPEGPRTMVGIATFDSTIHFYNLKRALQQPLMLIVPDVEDVYTPLQSDII 615 (1075)
Q Consensus 536 yvFvIDvS~~av~sG~l~~v~~aI~~~L~~Lp~~~rt~VGiITFDs~VhfYnl~~~l~qpqmlVvsDldd~FvPl~~~lL 615 (1075)
.+|+||+|.+... .-++.++++|...++.|+++ .+||||+|++..+.+- .+.+.
T Consensus 3 v~~vlD~S~SM~~-~rl~~ak~a~~~l~~~l~~~--~~~~li~F~~~~~~~~------------------~~~~~----- 56 (155)
T cd01466 3 LVAVLDVSGSMAG-DKLQLVKHALRFVISSLGDA--DRLSIVTFSTSAKRLS------------------PLRRM----- 56 (155)
T ss_pred EEEEEECCCCCCc-HHHHHHHHHHHHHHHhCCCc--ceEEEEEecCCccccC------------------CCccc-----
Confidence 5799999998743 25677889999999888764 5899999998754320 00110
Q ss_pred eehHHhHHHHHHHHhhcCccccCCCCccchHHHHHHHHHHHHHhc-----CCEEEEEecCCCCcCcccccccccccCCCC
Q 001452 616 VPVSECRQHLELLLESIPSMFQNNRTAESAFGAAVKAAFLALKST-----GGKLLVFQSVLPSVGIGALSAREAEGRSNI 690 (1075)
Q Consensus 616 v~l~esr~~I~~lLd~Lp~~f~~~~~~~~~lG~AL~aA~~lL~~~-----GGkIivF~sg~Pt~GpG~L~~re~~~r~~~ 690 (1075)
-.++++.+.++|+.|. ....++++.||+.|...++.. ...||++++|.++.|. .
T Consensus 57 --~~~~~~~~~~~i~~~~------~~g~T~~~~al~~a~~~~~~~~~~~~~~~iillTDG~~~~~~-------~------ 115 (155)
T cd01466 57 --TAKGKRSAKRVVDGLQ------AGGGTNVVGGLKKALKVLGDRRQKNPVASIMLLSDGQDNHGA-------V------ 115 (155)
T ss_pred --CHHHHHHHHHHHHhcc------CCCCccHHHHHHHHHHHHhhcccCCCceEEEEEcCCCCCcch-------h------
Confidence 0124556677777763 245689999999999998743 2578899988876540 0
Q ss_pred CCCccccccccchhHHHHHHHHHHHHhcCcEEEEEEecCCccCccccccccccccceEEEE
Q 001452 691 SSGEKETHKLLQPADKTLKAMAIEFAEYQVCVDVFITTQTYVDIASISVIPKTTGGQVYYY 751 (1075)
Q Consensus 691 ~~gt~ke~~ll~pa~~FYk~LA~~~~~~gIsVDlFl~s~~~~DlatL~~La~~TGG~v~~Y 751 (1075)
. .++.+.+|+|..+.+.. ..|..+|..|+..|||+.|+.
T Consensus 116 ~---------------------~~~~~~~v~v~~igig~-~~~~~~l~~iA~~t~G~~~~~ 154 (155)
T cd01466 116 V---------------------LRADNAPIPIHTFGLGA-SHDPALLAFIAEITGGTFSYV 154 (155)
T ss_pred h---------------------hcccCCCceEEEEecCC-CCCHHHHHHHHhccCceEEEe
Confidence 0 01224688888888864 468889999999999999874
No 20
>cd01456 vWA_ywmD_type VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=98.44 E-value=2.6e-06 Score=90.72 Aligned_cols=174 Identities=20% Similarity=0.197 Sum_probs=111.4
Q ss_pred CCCCCcEEEEEEEcchhHHh-----hhHHHHHHHHHHHHHhcCCCCCCcEEEEEEeCCeEEEEecCCCCCCceEeecCCc
Q 001452 529 RDPMPAVFFFLIDVSMNALQ-----TGATAAACSAISQVISDLPEGPRTMVGIATFDSTIHFYNLKRALQQPLMLIVPDV 603 (1075)
Q Consensus 529 r~p~pp~yvFvIDvS~~av~-----sG~l~~v~~aI~~~L~~Lp~~~rt~VGiITFDs~VhfYnl~~~l~qpqmlVvsDl 603 (1075)
+...+..++||||+|.++.. ...++.+++++...|+.++++ .+|||++|++.++-. .. .. .+++
T Consensus 16 ~~~~~~~vv~vlD~SgSM~~~~~~~~~rl~~ak~a~~~~l~~l~~~--~~v~lv~F~~~~~~~---~~---~~-~~~p-- 84 (206)
T cd01456 16 EPQLPPNVAIVLDNSGSMREVDGGGETRLDNAKAALDETANALPDG--TRLGLWTFSGDGDNP---LD---VR-VLVP-- 84 (206)
T ss_pred ccCCCCcEEEEEeCCCCCcCCCCCcchHHHHHHHHHHHHHHhCCCC--ceEEEEEecCCCCCC---cc---cc-cccc--
Confidence 34567789999999998762 236889999999999988654 699999999855210 00 00 0000
Q ss_pred cccccCCcccceeehHHhHHHHHHHHhhcCccccCCCCccchHHHHHHHHHHHHHhcC-CEEEEEecCCCCcCccccccc
Q 001452 604 EDVYTPLQSDIIVPVSECRQHLELLLESIPSMFQNNRTAESAFGAAVKAAFLALKSTG-GKLLVFQSVLPSVGIGALSAR 682 (1075)
Q Consensus 604 dd~FvPl~~~lLv~l~esr~~I~~lLd~Lp~~f~~~~~~~~~lG~AL~aA~~lL~~~G-GkIivF~sg~Pt~GpG~L~~r 682 (1075)
..++...+--.....++.|.+.|+.|.. ....+.++.||+.|...++... ..||++++|..+.+...
T Consensus 85 ---~~~~~~~~~~~~~~~~~~l~~~i~~i~~-----~~G~T~l~~aL~~a~~~l~~~~~~~iillTDG~~~~~~~~---- 152 (206)
T cd01456 85 ---KGCLTAPVNGFPSAQRSALDAALNSLQT-----PTGWTPLAAALAEAAAYVDPGRVNVVVLITDGEDTCGPDP---- 152 (206)
T ss_pred ---ccccccccCCCCcccHHHHHHHHHhhcC-----CCCcChHHHHHHHHHHHhCCCCcceEEEEcCCCccCCCCH----
Confidence 0111000000001356677777887751 2456889999999999996222 67999998876543200
Q ss_pred ccccCCCCCCCccccccccchhHHHHHHHHHHH-HhcCcEEEEEEecCCccCccccccccccccceE
Q 001452 683 EAEGRSNISSGEKETHKLLQPADKTLKAMAIEF-AEYQVCVDVFITTQTYVDIASISVIPKTTGGQV 748 (1075)
Q Consensus 683 e~~~r~~~~~gt~ke~~ll~pa~~FYk~LA~~~-~~~gIsVDlFl~s~~~~DlatL~~La~~TGG~v 748 (1075)
.+..++++.+. .+.+|.|+++.+..+ .|...|..|++.|||..
T Consensus 153 ----------------------~~~~~~~~~~~~~~~~i~i~~igiG~~-~~~~~l~~iA~~tgG~~ 196 (206)
T cd01456 153 ----------------------CEVARELAKRRTPAPPIKVNVIDFGGD-ADRAELEAIAEATGGTY 196 (206)
T ss_pred ----------------------HHHHHHHHHhcCCCCCceEEEEEecCc-ccHHHHHHHHHhcCCeE
Confidence 01112222211 225899999999865 67889999999999988
No 21
>TIGR00868 hCaCC calcium-activated chloride channel protein 1. distributions. found a row in 1A13.INFO that was not parsed out
Probab=98.44 E-value=9.4e-06 Score=102.07 Aligned_cols=167 Identities=17% Similarity=0.212 Sum_probs=108.8
Q ss_pred CcEEEEEEEcchhHHhhhHHHHHHHHHHHHHhc-CCCCCCcEEEEEEeCCeEEEEecCCCCCCceEeecCCccccccCCc
Q 001452 533 PAVFFFLIDVSMNALQTGATAAACSAISQVISD-LPEGPRTMVGIATFDSTIHFYNLKRALQQPLMLIVPDVEDVYTPLQ 611 (1075)
Q Consensus 533 pp~yvFvIDvS~~av~sG~l~~v~~aI~~~L~~-Lp~~~rt~VGiITFDs~VhfYnl~~~l~qpqmlVvsDldd~FvPl~ 611 (1075)
...++||||+|.++.....+..+.++++..|.. +.. ..+||||+||+..++.. ++ .++.
T Consensus 304 ~r~VVLVLDvSGSM~g~dRL~~lkqAA~~fL~~~l~~--~DrVGLVtFsssA~vl~--------------pL----t~It 363 (863)
T TIGR00868 304 QRIVCLVLDKSGSMTVEDRLKRMNQAAKLFLLQTVEK--GSWVGMVTFDSAAYIKN--------------EL----IQIT 363 (863)
T ss_pred CceEEEEEECCccccccCHHHHHHHHHHHHHHHhCCC--CCEEEEEEECCceeEee--------------cc----ccCC
Confidence 356899999999985434577777777776654 333 36999999998765321 11 1110
Q ss_pred ccceeehHHhHHHHHHHHhhcCccccCCCCccchHHHHHHHHHHHHHh-----cCCEEEEEecCCCCcCccccccccccc
Q 001452 612 SDIIVPVSECRQHLELLLESIPSMFQNNRTAESAFGAAVKAAFLALKS-----TGGKLLVFQSVLPSVGIGALSAREAEG 686 (1075)
Q Consensus 612 ~~lLv~l~esr~~I~~lLd~Lp~~f~~~~~~~~~lG~AL~aA~~lL~~-----~GGkIivF~sg~Pt~GpG~L~~re~~~ 686 (1075)
+ ...++.|...|... ....++++.||+.|+++|+. .+..||++++|..+.+
T Consensus 364 s------~~dr~aL~~~L~~~-------A~GGT~I~~GL~~Alq~L~~~~~~~~~~~IILLTDGedn~~----------- 419 (863)
T TIGR00868 364 S------SAERDALTANLPTA-------ASGGTSICSGLKAAFQVIKKSYQSTDGSEIVLLTDGEDNTI----------- 419 (863)
T ss_pred c------HHHHHHHHHhhccc-------cCCCCcHHHHHHHHHHHHHhcccccCCCEEEEEeCCCCCCH-----------
Confidence 0 12343344333311 24578999999999999975 3567888877653210
Q ss_pred CCCCCCCccccccccchhHHHHHHHHHHHHhcCcEEEEEEecCCccCccccccccccccceEEEEcCCCcccchHHHHHH
Q 001452 687 RSNISSGEKETHKLLQPADKTLKAMAIEFAEYQVCVDVFITTQTYVDIASISVIPKTTGGQVYYYYPFSALSDPAKLYND 766 (1075)
Q Consensus 687 r~~~~~gt~ke~~ll~pa~~FYk~LA~~~~~~gIsVDlFl~s~~~~DlatL~~La~~TGG~v~~Y~~F~~~~d~~kL~~d 766 (1075)
+++..++.+++|.|+.|.++.+.- ..|..||+.|||..|+..+= .+...|.+.
T Consensus 420 ----------------------~~~l~~lk~~gVtI~TIg~G~dad--~~L~~IA~~TGG~~f~asd~---~dl~~L~dA 472 (863)
T TIGR00868 420 ----------------------SSCFEEVKQSGAIIHTIALGPSAA--KELEELSDMTGGLRFYASDQ---ADNNGLIDA 472 (863)
T ss_pred ----------------------HHHHHHHHHcCCEEEEEEeCCChH--HHHHHHHHhcCCEEEEeCCH---HHHHHHHHH
Confidence 123445667899999999987643 45899999999999988641 233455555
Q ss_pred HHHh
Q 001452 767 LRWN 770 (1075)
Q Consensus 767 L~r~ 770 (1075)
+.++
T Consensus 473 F~~i 476 (863)
T TIGR00868 473 FGAL 476 (863)
T ss_pred HHHH
Confidence 5544
No 22
>cd01465 vWA_subgroup VWA subgroup: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if n
Probab=98.44 E-value=5.5e-06 Score=84.55 Aligned_cols=156 Identities=15% Similarity=0.173 Sum_probs=109.8
Q ss_pred EEEEEEEcchhHHhhhHHHHHHHHHHHHHhcCCCCCCcEEEEEEeCCeEEEEecCCCCCCceEeecCCccccccCCcccc
Q 001452 535 VFFFLIDVSMNALQTGATAAACSAISQVISDLPEGPRTMVGIATFDSTIHFYNLKRALQQPLMLIVPDVEDVYTPLQSDI 614 (1075)
Q Consensus 535 ~yvFvIDvS~~av~sG~l~~v~~aI~~~L~~Lp~~~rt~VGiITFDs~VhfYnl~~~l~qpqmlVvsDldd~FvPl~~~l 614 (1075)
.++||||+|.+.-... ++.+++++...++.+..+ .+|++|+|++..+.+- +.. .
T Consensus 2 ~~~~vlD~S~SM~~~~-~~~~k~a~~~~~~~l~~~--~~v~li~f~~~~~~~~--------------~~~----~----- 55 (170)
T cd01465 2 NLVFVIDRSGSMDGPK-LPLVKSALKLLVDQLRPD--DRLAIVTYDGAAETVL--------------PAT----P----- 55 (170)
T ss_pred cEEEEEECCCCCCChh-HHHHHHHHHHHHHhCCCC--CEEEEEEecCCccEEe--------------cCc----c-----
Confidence 3789999999875443 678888899999888654 6999999987654321 000 0
Q ss_pred eeehHHhHHHHHHHHhhcCccccCCCCccchHHHHHHHHHHHHHhc---C--CEEEEEecCCCCcCcccccccccccCCC
Q 001452 615 IVPVSECRQHLELLLESIPSMFQNNRTAESAFGAAVKAAFLALKST---G--GKLLVFQSVLPSVGIGALSAREAEGRSN 689 (1075)
Q Consensus 615 Lv~l~esr~~I~~lLd~Lp~~f~~~~~~~~~lG~AL~aA~~lL~~~---G--GkIivF~sg~Pt~GpG~L~~re~~~r~~ 689 (1075)
...++.+...|+++. ....+-++.||+.|+..++.. + .+|++|++|.++.|...
T Consensus 56 ----~~~~~~l~~~l~~~~------~~g~T~~~~al~~a~~~~~~~~~~~~~~~ivl~TDG~~~~~~~~----------- 114 (170)
T cd01465 56 ----VRDKAAILAAIDRLT------AGGSTAGGAGIQLGYQEAQKHFVPGGVNRILLATDGDFNVGETD----------- 114 (170)
T ss_pred ----cchHHHHHHHHHcCC------CCCCCCHHHHHHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCCCC-----------
Confidence 012344555555553 234567899999999988642 2 57999999987754310
Q ss_pred CCCCccccccccchhHHHHHHHHHHHHhcCcEEEEEEecCCccCccccccccccccceEEEEcC
Q 001452 690 ISSGEKETHKLLQPADKTLKAMAIEFAEYQVCVDVFITTQTYVDIASISVIPKTTGGQVYYYYP 753 (1075)
Q Consensus 690 ~~~gt~ke~~ll~pa~~FYk~LA~~~~~~gIsVDlFl~s~~~~DlatL~~La~~TGG~v~~Y~~ 753 (1075)
.+-+++....+.+.+|.|+.|.+. ...|...|..+++.++|..++..+
T Consensus 115 ---------------~~~~~~~~~~~~~~~v~i~~i~~g-~~~~~~~l~~ia~~~~g~~~~~~~ 162 (170)
T cd01465 115 ---------------PDELARLVAQKRESGITLSTLGFG-DNYNEDLMEAIADAGNGNTAYIDN 162 (170)
T ss_pred ---------------HHHHHHHHHHhhcCCeEEEEEEeC-CCcCHHHHHHHHhcCCceEEEeCC
Confidence 012344555667889999999998 678999999999999999887655
No 23
>cd01463 vWA_VGCC_like VWA Voltage gated Calcium channel like: Voltage-gated calcium channels are a complex of five proteins: alpha 1, beta 1, gamma, alpha 2 and delta. The alpha 2 and delta subunits result from proteolytic processing of a single gene product and carries at its N-terminus the VWA and cache domains, The alpha 2 delta gene family has orthologues in D. melanogaster and C. elegans but none have been detected in aither A. thaliana or yeast. The exact biochemical function of the VWA domain is not known but the alpha 2 delta complex has been shown to regulate various functional properties of the channel complex.
Probab=98.43 E-value=6e-06 Score=86.92 Aligned_cols=165 Identities=15% Similarity=0.173 Sum_probs=107.6
Q ss_pred CCCcEEEEEEEcchhHHhhhHHHHHHHHHHHHHhcCCCCCCcEEEEEEeCCeEEEEecCCCCCCceEeecCCccccccCC
Q 001452 531 PMPAVFFFLIDVSMNALQTGATAAACSAISQVISDLPEGPRTMVGIATFDSTIHFYNLKRALQQPLMLIVPDVEDVYTPL 610 (1075)
Q Consensus 531 p~pp~yvFvIDvS~~av~sG~l~~v~~aI~~~L~~Lp~~~rt~VGiITFDs~VhfYnl~~~l~qpqmlVvsDldd~FvPl 610 (1075)
..|-.++||||+|.++-.. -++.++++++..|+.|.++ .+||||+|++.++.+---. .
T Consensus 11 ~~p~~vv~llD~SgSM~~~-~l~~ak~~~~~ll~~l~~~--d~v~lv~F~~~~~~~~~~~-------------~------ 68 (190)
T cd01463 11 TSPKDIVILLDVSGSMTGQ-RLHLAKQTVSSILDTLSDN--DFFNIITFSNEVNPVVPCF-------------N------ 68 (190)
T ss_pred cCCceEEEEEECCCCCCcH-HHHHHHHHHHHHHHhCCCC--CEEEEEEeCCCeeEEeeec-------------c------
Confidence 3566899999999987543 4678899999999998764 6899999999876431000 0
Q ss_pred cccceeehHHhHHHHHHHHhhcCccccCCCCccchHHHHHHHHHHHHHh---c-------C--CEEEEEecCCCCcCccc
Q 001452 611 QSDIIVPVSECRQHLELLLESIPSMFQNNRTAESAFGAAVKAAFLALKS---T-------G--GKLLVFQSVLPSVGIGA 678 (1075)
Q Consensus 611 ~~~lLv~l~esr~~I~~lLd~Lp~~f~~~~~~~~~lG~AL~aA~~lL~~---~-------G--GkIivF~sg~Pt~GpG~ 678 (1075)
..++....+.++.+.+.|+.|.. ...+.++.||+.|++.|+. . + ..||++++|.++.+.
T Consensus 69 -~~~~~~~~~~~~~~~~~l~~l~~------~G~T~~~~al~~a~~~l~~~~~~~~~~~~~~~~~~iillTDG~~~~~~-- 139 (190)
T cd01463 69 -DTLVQATTSNKKVLKEALDMLEA------KGIANYTKALEFAFSLLLKNLQSNHSGSRSQCNQAIMLITDGVPENYK-- 139 (190)
T ss_pred -cceEecCHHHHHHHHHHHhhCCC------CCcchHHHHHHHHHHHHHHhhhcccccccCCceeEEEEEeCCCCCcHh--
Confidence 11111122345555666666542 3457899999999988875 1 1 358889988765210
Q ss_pred ccccccccCCCCCCCccccccccchhHHHHHHHHH-HHHhcCcEEEEEEecCCccCccccccccccccceEEEEcC
Q 001452 679 LSAREAEGRSNISSGEKETHKLLQPADKTLKAMAI-EFAEYQVCVDVFITTQTYVDIASISVIPKTTGGQVYYYYP 753 (1075)
Q Consensus 679 L~~re~~~r~~~~~gt~ke~~ll~pa~~FYk~LA~-~~~~~gIsVDlFl~s~~~~DlatL~~La~~TGG~v~~Y~~ 753 (1075)
+.++++.. ...+.+|.|..|.++.+..|...|..|+..+||..++.++
T Consensus 140 ---------------------------~~~~~~~~~~~~~~~v~i~tigiG~~~~d~~~L~~lA~~~~G~~~~i~~ 188 (190)
T cd01463 140 ---------------------------EIFDKYNWDKNSEIPVRVFTYLIGREVTDRREIQWMACENKGYYSHIQS 188 (190)
T ss_pred ---------------------------HHHHHhcccccCCCcEEEEEEecCCccccchHHHHHHhhcCCeEEEccc
Confidence 01111110 1112246666666666656889999999999999998765
No 24
>PF13519 VWA_2: von Willebrand factor type A domain; PDB: 3IBS_B 3RAG_B 2X5N_A.
Probab=98.40 E-value=4.1e-06 Score=84.53 Aligned_cols=151 Identities=14% Similarity=0.162 Sum_probs=101.1
Q ss_pred EEEEEEcchhHHhhh----HHHHHHHHHHHHHhcCCCCCCcEEEEEEeCCeEEEEecCCCCCCceEeecCCccccccCCc
Q 001452 536 FFFLIDVSMNALQTG----ATAAACSAISQVISDLPEGPRTMVGIATFDSTIHFYNLKRALQQPLMLIVPDVEDVYTPLQ 611 (1075)
Q Consensus 536 yvFvIDvS~~av~sG----~l~~v~~aI~~~L~~Lp~~~rt~VGiITFDs~VhfYnl~~~l~qpqmlVvsDldd~FvPl~ 611 (1075)
+|||||+|.+.-..+ .++.+++++...++.+++ .+|+|++|++..+..
T Consensus 2 vv~v~D~SgSM~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~l~~f~~~~~~~------------------------- 53 (172)
T PF13519_consen 2 VVFVLDNSGSMNGYDGNRTRIDQAKDALNELLANLPG---DRVGLVSFSDSSRTL------------------------- 53 (172)
T ss_dssp EEEEEE-SGGGGTTTSSS-HHHHHHHHHHHHHHHHTT---SEEEEEEESTSCEEE-------------------------
T ss_pred EEEEEECCcccCCCCCCCcHHHHHHHHHHHHHHHCCC---CEEEEEEeccccccc-------------------------
Confidence 689999999986552 578889999999988764 499999998753110
Q ss_pred ccceeehHHhHHHHHHHHhhcCccccCCCCccchHHHHHHHHHHHHHhcC---CEEEEEecCCCCcCcccccccccccCC
Q 001452 612 SDIIVPVSECRQHLELLLESIPSMFQNNRTAESAFGAAVKAAFLALKSTG---GKLLVFQSVLPSVGIGALSAREAEGRS 688 (1075)
Q Consensus 612 ~~lLv~l~esr~~I~~lLd~Lp~~f~~~~~~~~~lG~AL~aA~~lL~~~G---GkIivF~sg~Pt~GpG~L~~re~~~r~ 688 (1075)
.++...++.+.+.|+++.... .....++++.||..|.++++... ..|++|++|.++ .
T Consensus 54 ----~~~t~~~~~~~~~l~~~~~~~--~~~~~t~~~~al~~a~~~~~~~~~~~~~iv~iTDG~~~---------~----- 113 (172)
T PF13519_consen 54 ----SPLTSDKDELKNALNKLSPQG--MPGGGTNLYDALQEAAKMLASSDNRRRAIVLITDGEDN---------S----- 113 (172)
T ss_dssp ----EEEESSHHHHHHHHHTHHHHG----SSS--HHHHHHHHHHHHHC-SSEEEEEEEEES-TTH---------C-----
T ss_pred ----ccccccHHHHHHHhhcccccc--cCccCCcHHHHHHHHHHHHHhCCCCceEEEEecCCCCC---------c-----
Confidence 011234555666666664321 22455789999999999998653 456666665322 0
Q ss_pred CCCCCccccccccchhHHHHHHHHHHHHhcCcEEEEEEecCCccCccccccccccccceEEEEc
Q 001452 689 NISSGEKETHKLLQPADKTLKAMAIEFAEYQVCVDVFITTQTYVDIASISVIPKTTGGQVYYYY 752 (1075)
Q Consensus 689 ~~~~gt~ke~~ll~pa~~FYk~LA~~~~~~gIsVDlFl~s~~~~DlatL~~La~~TGG~v~~Y~ 752 (1075)
+ ..+.+..+.+.+|.|.++.+......-..|..|++.|||..+...
T Consensus 114 ------~------------~~~~~~~~~~~~i~i~~v~~~~~~~~~~~l~~la~~tgG~~~~~~ 159 (172)
T PF13519_consen 114 ------S------------DIEAAKALKQQGITIYTVGIGSDSDANEFLQRLAEATGGRYFHVD 159 (172)
T ss_dssp ------H------------HHHHHHHHHCTTEEEEEEEES-TT-EHHHHHHHHHHTEEEEEEE-
T ss_pred ------c------------hhHHHHHHHHcCCeEEEEEECCCccHHHHHHHHHHhcCCEEEEec
Confidence 0 012666788999999999998887766789999999999988873
No 25
>TIGR03436 acidobact_VWFA VWFA-related Acidobacterial domain. Members of this family are bacterial domains that include a region related to the von Willebrand factor type A (VWFA) domain (pfam00092). These domains are restricted to, and have undergone a large paralogous family expansion in, the Acidobacteria, including Solibacter usitatus and Acidobacterium capsulatum ATCC 51196.
Probab=98.27 E-value=3.3e-05 Score=86.91 Aligned_cols=174 Identities=17% Similarity=0.206 Sum_probs=108.3
Q ss_pred CCcEEEEEEEcchhHHhhhHHHHHHHHHHHHHhc-CCCCCCcEEEEEEeCCeEEEEecCCCCCCceEeecCCccccccCC
Q 001452 532 MPAVFFFLIDVSMNALQTGATAAACSAISQVISD-LPEGPRTMVGIATFDSTIHFYNLKRALQQPLMLIVPDVEDVYTPL 610 (1075)
Q Consensus 532 ~pp~yvFvIDvS~~av~sG~l~~v~~aI~~~L~~-Lp~~~rt~VGiITFDs~VhfYnl~~~l~qpqmlVvsDldd~FvPl 610 (1075)
.|...+||||+|.+... .+..++++++..|+. +.. +.+|+||+|++.++... ++
T Consensus 52 ~p~~vvlvlD~SgSM~~--~~~~a~~a~~~~l~~~l~~--~d~v~lv~f~~~~~~~~--------------~~------- 106 (296)
T TIGR03436 52 LPLTVGLVIDTSGSMRN--DLDRARAAAIRFLKTVLRP--NDRVFVVTFNTRLRLLQ--------------DF------- 106 (296)
T ss_pred CCceEEEEEECCCCchH--HHHHHHHHHHHHHHhhCCC--CCEEEEEEeCCceeEee--------------cC-------
Confidence 46789999999998754 467788888888877 533 47999999998775421 11
Q ss_pred cccceeehHHhHHHHHHHHhhcCcccc---------CCCCccchHHHHHHHH-HHHHHhc-----CCE-EEEEecCCCCc
Q 001452 611 QSDIIVPVSECRQHLELLLESIPSMFQ---------NNRTAESAFGAAVKAA-FLALKST-----GGK-LLVFQSVLPSV 674 (1075)
Q Consensus 611 ~~~lLv~l~esr~~I~~lLd~Lp~~f~---------~~~~~~~~lG~AL~aA-~~lL~~~-----GGk-IivF~sg~Pt~ 674 (1075)
..+++.|...|+.|..... ......+++..||..| .+++... |-| ||+|++|.-+
T Consensus 107 --------t~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~g~T~l~~al~~aa~~~~~~~~~~~p~rk~iIllTDG~~~- 177 (296)
T TIGR03436 107 --------TSDPRLLEAALNRLKPPLRTDYNSSGAFVRDGGGTALYDAITLAALEQLANALAGIPGRKALIVISDGGDN- 177 (296)
T ss_pred --------CCCHHHHHHHHHhccCCCccccccccccccCCCcchhHHHHHHHHHHHHHHhhcCCCCCeEEEEEecCCCc-
Confidence 1124456666676643110 0124567888887544 4555432 333 5555555210
Q ss_pred CcccccccccccCCCCCCCccccccccchhHHHHHHHHHHHHhcCcEEEEEEecCCc------------cCccccccccc
Q 001452 675 GIGALSAREAEGRSNISSGEKETHKLLQPADKTLKAMAIEFAEYQVCVDVFITTQTY------------VDIASISVIPK 742 (1075)
Q Consensus 675 GpG~L~~re~~~r~~~~~gt~ke~~ll~pa~~FYk~LA~~~~~~gIsVDlFl~s~~~------------~DlatL~~La~ 742 (1075)
....-++++...|.+.+|.|..+.+.... .+-..|..||+
T Consensus 178 ----------------------------~~~~~~~~~~~~~~~~~v~vy~I~~~~~~~~~~~~~~~~~~~~~~~L~~iA~ 229 (296)
T TIGR03436 178 ----------------------------RSRDTLERAIDAAQRADVAIYSIDARGLRAPDLGAGAKAGLGGPEALERLAE 229 (296)
T ss_pred ----------------------------chHHHHHHHHHHHHHcCCEEEEeccCccccCCcccccccCCCcHHHHHHHHH
Confidence 01123567778888999999888776321 24567999999
Q ss_pred cccceEEEEcCCCcccchHHHHHHHHHhc
Q 001452 743 TTGGQVYYYYPFSALSDPAKLYNDLRWNI 771 (1075)
Q Consensus 743 ~TGG~v~~Y~~F~~~~d~~kL~~dL~r~L 771 (1075)
.|||+.++- + ..+....++.+...+
T Consensus 230 ~TGG~~~~~-~---~~~l~~~f~~i~~~~ 254 (296)
T TIGR03436 230 ETGGRAFYV-N---SNDLDGAFAQIAEEL 254 (296)
T ss_pred HhCCeEecc-c---CccHHHHHHHHHHHH
Confidence 999997664 2 123444444444433
No 26
>cd01474 vWA_ATR ATR (Anthrax Toxin Receptor): Anthrax toxin is a key virulence factor for Bacillus anthracis, the causative agent of anthrax. ATR is the cellular receptor for the anthrax protective antigen and facilitates entry of the toxin into cells. The VWA domain in ATR contains the toxin binding site and mediates interaction with protective antigen. The binding is mediated by divalent cations that binds to the MIDAS motif. These proteins are a family of vertebrate ECM receptors expressed by endothelial cells.
Probab=98.23 E-value=3.2e-05 Score=81.10 Aligned_cols=169 Identities=11% Similarity=0.062 Sum_probs=98.2
Q ss_pred cEEEEEEEcchhHHhhhHHHHHHHHHHHHHhcCCCCCCcEEEEEEeCCeEEEEecCCCCCCceEeecCCccccccCCccc
Q 001452 534 AVFFFLIDVSMNALQTGATAAACSAISQVISDLPEGPRTMVGIATFDSTIHFYNLKRALQQPLMLIVPDVEDVYTPLQSD 613 (1075)
Q Consensus 534 p~yvFvIDvS~~av~sG~l~~v~~aI~~~L~~Lp~~~rt~VGiITFDs~VhfYnl~~~l~qpqmlVvsDldd~FvPl~~~ 613 (1075)
.-.+|+||+|.+.-. .. ....+.+++.++.+.. ++.+||+|+|++..+..- ++.
T Consensus 5 ~Dvv~llD~SgSm~~-~~-~~~~~~~~~l~~~~~~-~~~rvglv~Fs~~~~~~~--------------~l~--------- 58 (185)
T cd01474 5 FDLYFVLDKSGSVAA-NW-IEIYDFVEQLVDRFNS-PGLRFSFITFSTRATKIL--------------PLT--------- 58 (185)
T ss_pred eeEEEEEeCcCchhh-hH-HHHHHHHHHHHHHcCC-CCcEEEEEEecCCceEEE--------------ecc---------
Confidence 357999999998753 22 2334666666666542 458999999987643211 011
Q ss_pred ceeehHHhHHHHHHHHhhcCccccCCCCccchHHHHHHHHHHHHH--hcCCE-----EEEEecCCCCcCccccccccccc
Q 001452 614 IIVPVSECRQHLELLLESIPSMFQNNRTAESAFGAAVKAAFLALK--STGGK-----LLVFQSVLPSVGIGALSAREAEG 686 (1075)
Q Consensus 614 lLv~l~esr~~I~~lLd~Lp~~f~~~~~~~~~lG~AL~aA~~lL~--~~GGk-----IivF~sg~Pt~GpG~L~~re~~~ 686 (1075)
+..+.+.+.|+.|..+.. ...+++|.||+.|.+.|. ..||+ ||++++|..+-..+
T Consensus 59 ------~~~~~~~~~l~~l~~~~~---~g~T~~~~aL~~a~~~l~~~~~~~r~~~~~villTDG~~~~~~~--------- 120 (185)
T cd01474 59 ------DDSSAIIKGLEVLKKVTP---SGQTYIHEGLENANEQIFNRNGGGRETVSVIIALTDGQLLLNGH--------- 120 (185)
T ss_pred ------ccHHHHHHHHHHHhccCC---CCCCcHHHHHHHHHHHHHhhccCCCCCCeEEEEEcCCCcCCCCC---------
Confidence 011123334444443322 367899999999998773 34442 77787776431000
Q ss_pred CCCCCCCccccccccchhHHHHHHHHHHHHhcCcEEEEEEecCCccCccccccccccccceEE-EEcCCCcccchHHHHH
Q 001452 687 RSNISSGEKETHKLLQPADKTLKAMAIEFAEYQVCVDVFITTQTYVDIASISVIPKTTGGQVY-YYYPFSALSDPAKLYN 765 (1075)
Q Consensus 687 r~~~~~gt~ke~~ll~pa~~FYk~LA~~~~~~gIsVDlFl~s~~~~DlatL~~La~~TGG~v~-~Y~~F~~~~d~~kL~~ 765 (1075)
.+ -.+.+.++.+.||.|..+.+ ...|...|..++..++ .+| ...+|+ ....+.+
T Consensus 121 -------~~------------~~~~a~~l~~~gv~i~~vgv--~~~~~~~L~~iA~~~~-~~f~~~~~~~---~l~~~~~ 175 (185)
T cd01474 121 -------KY------------PEHEAKLSRKLGAIVYCVGV--TDFLKSQLINIADSKE-YVFPVTSGFQ---ALSGIIE 175 (185)
T ss_pred -------cc------------hHHHHHHHHHcCCEEEEEee--chhhHHHHHHHhCCCC-eeEecCccHH---HHHHHHH
Confidence 00 01234566778887766666 5568888999998774 455 334553 2344555
Q ss_pred HHHHhc
Q 001452 766 DLRWNI 771 (1075)
Q Consensus 766 dL~r~L 771 (1075)
+|.+.+
T Consensus 176 ~~~~~~ 181 (185)
T cd01474 176 SVVKKA 181 (185)
T ss_pred HHHHhh
Confidence 555444
No 27
>cd01472 vWA_collagen von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins. This domain has a variety of functions including: intermolecular adhesion, cell migration, signalling, transcription, and DNA repair. In integrins these domains form heterodimers while in vWF it forms homodimers and multimers. There are different interaction surfaces of this domain as seen by its complexes with collagen with either integrin or human vWFA. In integrins collagen binding occurs via the metal ion-dependent adhesion site (MIDAS) and involves three surface loops located on the upper surface of the molecule. In human vWFA, collagen binding is thought to occur on the bottom of the molecule and does not involve the vestigial MIDAS motif.
Probab=98.22 E-value=3e-05 Score=79.36 Aligned_cols=151 Identities=14% Similarity=0.109 Sum_probs=96.1
Q ss_pred EEEEEEcchhHHhhhHHHHHHHHHHHHHhcCCCC-CCcEEEEEEeCCeEEEEecCCCCCCceEeecCCccccccCCcccc
Q 001452 536 FFFLIDVSMNALQTGATAAACSAISQVISDLPEG-PRTMVGIATFDSTIHFYNLKRALQQPLMLIVPDVEDVYTPLQSDI 614 (1075)
Q Consensus 536 yvFvIDvS~~av~sG~l~~v~~aI~~~L~~Lp~~-~rt~VGiITFDs~VhfYnl~~~l~qpqmlVvsDldd~FvPl~~~l 614 (1075)
.+|+||+|.+.... -++.++++++..+..|... .+.+||||+|++..+..- .+..
T Consensus 3 vv~vlD~SgSm~~~-~~~~~k~~~~~~~~~l~~~~~~~~~giv~Fs~~~~~~~--------------~~~~--------- 58 (164)
T cd01472 3 IVFLVDGSESIGLS-NFNLVKDFVKRVVERLDIGPDGVRVGVVQYSDDPRTEF--------------YLNT--------- 58 (164)
T ss_pred EEEEEeCCCCCCHH-HHHHHHHHHHHHHhhcccCCCCeEEEEEEEcCceeEEE--------------ecCC---------
Confidence 58999999977543 4577788888888877532 347999999998765421 0100
Q ss_pred eeehHHhHHHHHHHHhhcCccccCCCCccchHHHHHHHHHHHHHhc--------CCEEEEEecCCCCcCccccccccccc
Q 001452 615 IVPVSECRQHLELLLESIPSMFQNNRTAESAFGAAVKAAFLALKST--------GGKLLVFQSVLPSVGIGALSAREAEG 686 (1075)
Q Consensus 615 Lv~l~esr~~I~~lLd~Lp~~f~~~~~~~~~lG~AL~aA~~lL~~~--------GGkIivF~sg~Pt~GpG~L~~re~~~ 686 (1075)
..+++.+.+.|+.|... ...+.++.||..|.+.+... ...||++++|.++.+
T Consensus 59 ----~~~~~~~~~~l~~l~~~-----~g~T~~~~al~~a~~~l~~~~~~~~~~~~~~iiliTDG~~~~~----------- 118 (164)
T cd01472 59 ----YRSKDDVLEAVKNLRYI-----GGGTNTGKALKYVRENLFTEASGSREGVPKVLVVITDGKSQDD----------- 118 (164)
T ss_pred ----CCCHHHHHHHHHhCcCC-----CCCchHHHHHHHHHHHhCCcccCCCCCCCEEEEEEcCCCCCch-----------
Confidence 02244455567777542 44578999999999988641 224666666632210
Q ss_pred CCCCCCCccccccccchhHHHHHHHHHHHHhcCcEEEEEEecCCccCccccccccccccc-eEEEEcC
Q 001452 687 RSNISSGEKETHKLLQPADKTLKAMAIEFAEYQVCVDVFITTQTYVDIASISVIPKTTGG-QVYYYYP 753 (1075)
Q Consensus 687 r~~~~~gt~ke~~ll~pa~~FYk~LA~~~~~~gIsVDlFl~s~~~~DlatL~~La~~TGG-~v~~Y~~ 753 (1075)
..+.+.++.+.||.|..+.+.. .|...|..++..++| .++.+.+
T Consensus 119 ---------------------~~~~~~~l~~~gv~i~~ig~g~--~~~~~L~~ia~~~~~~~~~~~~~ 163 (164)
T cd01472 119 ---------------------VEEPAVELKQAGIEVFAVGVKN--ADEEELKQIASDPKELYVFNVAD 163 (164)
T ss_pred ---------------------HHHHHHHHHHCCCEEEEEECCc--CCHHHHHHHHCCCchheEEeccC
Confidence 0112334556777655555444 499999999999987 5555544
No 28
>TIGR03788 marine_srt_targ marine proteobacterial sortase target protein. Members of this protein family are restricted to the Proteobacteria. Each contains a C-terminal sortase-recognition motif, transmembrane domain, and basic residues cluster at the the C-terminus, and is encoded adjacent to a sortase gene. This protein is frequently the only sortase target in its genome, which is as unusual its occurrence in Gram-negative rather than Gram-positive genomes. Many bacteria with this system are marine. In addition to the LPXTG signal, members carry a vault protein inter-alpha-trypsin inhibitor domain (pfam08487) and a von Willebrand factor type A domain (pfam00092).
Probab=98.20 E-value=0.00022 Score=88.18 Aligned_cols=287 Identities=11% Similarity=0.089 Sum_probs=162.3
Q ss_pred CCCCcEEEEEEEcchhHHhhhHHHHHHHHHHHHHhcCCCCCCcEEEEEEeCCeEEEEecCCCCCCceEeecCCccccccC
Q 001452 530 DPMPAVFFFLIDVSMNALQTGATAAACSAISQVISDLPEGPRTMVGIATFDSTIHFYNLKRALQQPLMLIVPDVEDVYTP 609 (1075)
Q Consensus 530 ~p~pp~yvFvIDvS~~av~sG~l~~v~~aI~~~L~~Lp~~~rt~VGiITFDs~VhfYnl~~~l~qpqmlVvsDldd~FvP 609 (1075)
...+..++||||+|.++.. .-++.+++++..+|+.|..+ .+|+||+||+.++.+.- . . .+
T Consensus 268 ~~~p~~vvfvlD~SgSM~g-~~i~~ak~al~~~l~~L~~~--d~~~ii~F~~~~~~~~~-------~-~---------~~ 327 (596)
T TIGR03788 268 QVLPRELVFVIDTSGSMAG-ESIEQAKSALLLALDQLRPG--DRFNIIQFDSDVTLLFP-------V-P---------VP 327 (596)
T ss_pred cCCCceEEEEEECCCCCCC-ccHHHHHHHHHHHHHhCCCC--CEEEEEEECCcceEecc-------c-c---------cc
Confidence 3456689999999998753 23677888999999998764 69999999998865420 0 0 00
Q ss_pred CcccceeehHHhHHHHHHHHhhcCccccCCCCccchHHHHHHHHHHHHHhc-C---CEEEEEecCCCCcCcccccccccc
Q 001452 610 LQSDIIVPVSECRQHLELLLESIPSMFQNNRTAESAFGAAVKAAFLALKST-G---GKLLVFQSVLPSVGIGALSAREAE 685 (1075)
Q Consensus 610 l~~~lLv~l~esr~~I~~lLd~Lp~~f~~~~~~~~~lG~AL~aA~~lL~~~-G---GkIivF~sg~Pt~GpG~L~~re~~ 685 (1075)
. -.++++.+...|+.|.. ...+.+..||+.|+...... . -.||++++|..+ +
T Consensus 328 ~-------~~~~~~~a~~~i~~l~a------~GgT~l~~aL~~a~~~~~~~~~~~~~~iillTDG~~~----------~- 383 (596)
T TIGR03788 328 A-------TAHNLARARQFVAGLQA------DGGTEMAGALSAALRDDGPESSGALRQVVFLTDGAVG----------N- 383 (596)
T ss_pred C-------CHHHHHHHHHHHhhCCC------CCCccHHHHHHHHHHhhcccCCCceeEEEEEeCCCCC----------C-
Confidence 0 01234444455665532 35678999999998775332 1 258888887421 0
Q ss_pred cCCCCCCCccccccccchhHHHHHHHHHHHHhcCcEEEEEEecCCccCccccccccccccceEEEEcCCCcccchHHHHH
Q 001452 686 GRSNISSGEKETHKLLQPADKTLKAMAIEFAEYQVCVDVFITTQTYVDIASISVIPKTTGGQVYYYYPFSALSDPAKLYN 765 (1075)
Q Consensus 686 ~r~~~~~gt~ke~~ll~pa~~FYk~LA~~~~~~gIsVDlFl~s~~~~DlatL~~La~~TGG~v~~Y~~F~~~~d~~kL~~ 765 (1075)
+ ...++.+. ....++.|..|.++.+ .|-..|..|++.+||..++..+ .+...+++.+
T Consensus 384 -----------~-------~~~~~~~~--~~~~~~ri~tvGiG~~-~n~~lL~~lA~~g~G~~~~i~~--~~~~~~~~~~ 440 (596)
T TIGR03788 384 -----------E-------DALFQLIR--TKLGDSRLFTVGIGSA-PNSYFMRKAAQFGRGSFTFIGS--TDEVQRKMSQ 440 (596)
T ss_pred -----------H-------HHHHHHHH--HhcCCceEEEEEeCCC-cCHHHHHHHHHcCCCEEEECCC--HHHHHHHHHH
Confidence 0 11222221 1234577887777654 5778899999999997666543 1112233333
Q ss_pred HHHHhccCCccccceEEEEeCCCceEEeeeCCcccCCCCceeecCCCCCCeEEEEEEecCCCCCCCceEEEEEEEEEecC
Q 001452 766 DLRWNITRPQGFEAVMRVRCSQGIQVQEYHGNFCKRIPTDIDLPAIDCNKAIMVTLKHDDKLQDGSECAFQCALLYTTVY 845 (1075)
Q Consensus 766 dL~r~Ltr~~g~~a~mrVR~S~GL~V~~~~Gnf~~rs~~~~~lp~id~dtSi~~el~~d~~L~~~~~~~fQ~AlLYTt~~ 845 (1075)
.| +.+.....-+..+++.. ..+..++ --.++.+.....+.+..++... ... + .+..+. .
T Consensus 441 ~l-~~~~~p~l~~v~v~~~~---~~~~~v~---------P~~~p~L~~g~~l~v~g~~~~~---~~~--i--~v~g~~-~ 499 (596)
T TIGR03788 441 LF-AKLEQPALTDIALTFDN---GNAADVY---------PSPIPDLYRGEPLQIAIKLQQA---AGE--L--QLTGRT-G 499 (596)
T ss_pred HH-HhhcCeEEEEEEEEEcC---Cccceec---------cCCCccccCCCEEEEEEEecCC---CCe--E--EEEEEc-C
Confidence 33 33555666666666532 2222222 1235566666777777665331 112 2 223332 2
Q ss_pred CcEEEEEEecccCCCCCHHHHHhhcchhHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHHHHHHHHhhcc
Q 001452 846 GQRRIRVTTLSLPCTSNLSNLYRSADLDTQFTCFMKQAASEIPSTPL-ANVREQMMNLCVNALVSYRKFCA 915 (1075)
Q Consensus 846 GeRrIRV~Tl~lpVts~l~~vf~~aD~dai~~~laK~a~~~~l~~~l-~d~R~~L~~~lv~iL~~YRk~ca 915 (1075)
|+.. +..+.+... .+-..+-.++||+-+..+..... ..-++.+.++++++-..|+-.+.
T Consensus 500 ~~~~----~~~~~~~~~-------~~~~~l~~lwA~~~I~~L~~~~~~~~~~~~~~~~Ii~Lsl~y~lvT~ 559 (596)
T TIGR03788 500 SQPW----SQQLDLDSA-------APGKGIDKLWARRKIDSLEDSLRYGANEEKVKDQVTALALNHHLVSP 559 (596)
T ss_pred CceE----EEEEecCCC-------CCcchHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHhCCCCc
Confidence 2322 122222211 13344667788877776643211 01124566778888888876554
No 29
>cd01461 vWA_interalpha_trypsin_inhibitor vWA_interalpha trypsin inhibitor (ITI): ITI is a glycoprotein composed of three polypeptides- two heavy chains and one light chain (bikunin). Bikunin confers the protease-inhibitor function while the heavy chains are involved in rendering stability to the extracellular matrix by binding to hyaluronic acid. The heavy chains carry the VWA domain with a conserved MIDAS motif. Although the exact role of the VWA domains remains unknown, it has been speculated to be involved in mediating protein-protein interactions with the components of the extracellular matrix.
Probab=98.19 E-value=6e-05 Score=76.91 Aligned_cols=157 Identities=16% Similarity=0.181 Sum_probs=102.3
Q ss_pred CcEEEEEEEcchhHHhhhHHHHHHHHHHHHHhcCCCCCCcEEEEEEeCCeEEEEecCCCCCCceEeecCCccccccCCcc
Q 001452 533 PAVFFFLIDVSMNALQTGATAAACSAISQVISDLPEGPRTMVGIATFDSTIHFYNLKRALQQPLMLIVPDVEDVYTPLQS 612 (1075)
Q Consensus 533 pp~yvFvIDvS~~av~sG~l~~v~~aI~~~L~~Lp~~~rt~VGiITFDs~VhfYnl~~~l~qpqmlVvsDldd~FvPl~~ 612 (1075)
|.-++||||+|.+... .-++.+.++|...|+.++.+ .+|+|++|++.++.+- .. +.+
T Consensus 2 ~~~v~~vlD~S~SM~~-~~~~~~~~al~~~l~~l~~~--~~~~l~~Fs~~~~~~~-~~----------------~~~--- 58 (171)
T cd01461 2 PKEVVFVIDTSGSMSG-TKIEQTKEALLTALKDLPPG--DYFNIIGFSDTVEEFS-PS----------------SVS--- 58 (171)
T ss_pred CceEEEEEECCCCCCC-hhHHHHHHHHHHHHHhCCCC--CEEEEEEeCCCceeec-Cc----------------cee---
Confidence 4568999999998843 23778888999999888754 5899999998765331 00 000
Q ss_pred cceeehHHhHHHHHHHHhhcCccccCCCCccchHHHHHHHHHHHHHh---cCCEEEEEecCCCCcCcccccccccccCCC
Q 001452 613 DIIVPVSECRQHLELLLESIPSMFQNNRTAESAFGAAVKAAFLALKS---TGGKLLVFQSVLPSVGIGALSAREAEGRSN 689 (1075)
Q Consensus 613 ~lLv~l~esr~~I~~lLd~Lp~~f~~~~~~~~~lG~AL~aA~~lL~~---~GGkIivF~sg~Pt~GpG~L~~re~~~r~~ 689 (1075)
.+ .+.++.+.+.|+.+.. ...+.+..||..|...++. ....|++|++|..+ +
T Consensus 59 ---~~-~~~~~~~~~~l~~~~~------~g~T~l~~al~~a~~~l~~~~~~~~~iillTDG~~~----------~----- 113 (171)
T cd01461 59 ---AT-AENVAAAIEYVNRLQA------LGGTNMNDALEAALELLNSSPGSVPQIILLTDGEVT----------N----- 113 (171)
T ss_pred ---CC-HHHHHHHHHHHHhcCC------CCCcCHHHHHHHHHHhhccCCCCccEEEEEeCCCCC----------C-----
Confidence 00 1222333344454432 4457799999999998874 23566677766411 0
Q ss_pred CCCCccccccccchhHHHHHHHHHHHHhcCcEEEEEEecCCccCccccccccccccceEEEEcC
Q 001452 690 ISSGEKETHKLLQPADKTLKAMAIEFAEYQVCVDVFITTQTYVDIASISVIPKTTGGQVYYYYP 753 (1075)
Q Consensus 690 ~~~gt~ke~~ll~pa~~FYk~LA~~~~~~gIsVDlFl~s~~~~DlatL~~La~~TGG~v~~Y~~ 753 (1075)
..+++ +..+++.+.+|.|..+.+.. ..|...|..+++.|||..++..+
T Consensus 114 --------------~~~~~-~~~~~~~~~~i~i~~i~~g~-~~~~~~l~~ia~~~gG~~~~~~~ 161 (171)
T cd01461 114 --------------ESQIL-KNVREALSGRIRLFTFGIGS-DVNTYLLERLAREGRGIARRIYE 161 (171)
T ss_pred --------------HHHHH-HHHHHhcCCCceEEEEEeCC-ccCHHHHHHHHHcCCCeEEEecC
Confidence 01222 33444555688888877764 35667899999999999998876
No 30
>cd01470 vWA_complement_factors Complement factors B and C2 are two critical proteases for complement activation. They both contain three CCP or Sushi domains, a trypsin-type serine protease domain and a single VWA domain with a conserved metal ion dependent adhesion site referred commonly as the MIDAS motif. Orthologues of these molecules are found from echinoderms to chordates. During complement activation, the CCP domains are cleaved off, resulting in the formation of an active protease that cleaves and activates complement C3. Complement C2 is in the classical pathway and complement B is in the alternative pathway. The interaction of C2 with C4 and of factor B with C3b are both dependent on Mg2+ binding sites within the VWA domains and the VWA domain of factor B has been shown to mediate the binding of C3. This is consistent with the common inferred function of VWA domains as magnesium-dependent protein interaction domains.
Probab=98.11 E-value=4.8e-05 Score=80.52 Aligned_cols=167 Identities=13% Similarity=0.113 Sum_probs=102.0
Q ss_pred EEEEEEcchhHHhhhHHHHHHHHHHHHHhcCCCC-CCcEEEEEEeCCeEEEE-ecCCCCCCceEeecCCccccccCCccc
Q 001452 536 FFFLIDVSMNALQTGATAAACSAISQVISDLPEG-PRTMVGIATFDSTIHFY-NLKRALQQPLMLIVPDVEDVYTPLQSD 613 (1075)
Q Consensus 536 yvFvIDvS~~av~sG~l~~v~~aI~~~L~~Lp~~-~rt~VGiITFDs~VhfY-nl~~~l~qpqmlVvsDldd~FvPl~~~ 613 (1075)
++||||+|.+.-.. -++.++++|+..++.|... .+.+||+|+|++..+.. .+...
T Consensus 3 i~~vlD~SgSM~~~-~~~~~k~~~~~l~~~l~~~~~~~~v~li~Fs~~~~~~~~~~~~---------------------- 59 (198)
T cd01470 3 IYIALDASDSIGEE-DFDEAKNAIKTLIEKISSYEVSPRYEIISYASDPKEIVSIRDF---------------------- 59 (198)
T ss_pred EEEEEECCCCccHH-HHHHHHHHHHHHHHHccccCCCceEEEEEecCCceEEEecccC----------------------
Confidence 78999999987544 3678889999999888642 35799999998876432 22110
Q ss_pred ceeehHHhHHHHHHHHhhcCccccCCCCccchHHHHHHHHHHHHHh---c------C--CEEEEEecCCCCcCccccccc
Q 001452 614 IIVPVSECRQHLELLLESIPSMFQNNRTAESAFGAAVKAAFLALKS---T------G--GKLLVFQSVLPSVGIGALSAR 682 (1075)
Q Consensus 614 lLv~l~esr~~I~~lLd~Lp~~f~~~~~~~~~lG~AL~aA~~lL~~---~------G--GkIivF~sg~Pt~GpG~L~~r 682 (1075)
...+++.+...|+.+..... .....+.++.||+.+.+.+.. . + -.||++++|.+|.|... +
T Consensus 60 ----~~~~~~~~~~~l~~~~~~~~-~~~ggT~~~~Al~~~~~~l~~~~~~~~~~~~~~~~~iillTDG~~~~g~~~---~ 131 (198)
T cd01470 60 ----NSNDADDVIKRLEDFNYDDH-GDKTGTNTAAALKKVYERMALEKVRNKEAFNETRHVIILFTDGKSNMGGSP---L 131 (198)
T ss_pred ----CCCCHHHHHHHHHhCCcccc-cCccchhHHHHHHHHHHHHHHHHhcCccchhhcceEEEEEcCCCcCCCCCh---h
Confidence 00123334445665543211 123467899999998876631 1 1 23789999988765210 0
Q ss_pred ccccCCCCCCCccccccccchhHHHHHHHHH------HHHhcCcEEEEEEecCCccCccccccccccccce--EEEEcCC
Q 001452 683 EAEGRSNISSGEKETHKLLQPADKTLKAMAI------EFAEYQVCVDVFITTQTYVDIASISVIPKTTGGQ--VYYYYPF 754 (1075)
Q Consensus 683 e~~~r~~~~~gt~ke~~ll~pa~~FYk~LA~------~~~~~gIsVDlFl~s~~~~DlatL~~La~~TGG~--v~~Y~~F 754 (1075)
. ..+.++++.. .+.+.+|+|..|.+.. .+|...|..|+..|||+ +|+..+|
T Consensus 132 ~--------------------~~~~~~~~~~~~~~~~~~~~~~v~i~~iGvG~-~~~~~~L~~iA~~~~g~~~~f~~~~~ 190 (198)
T cd01470 132 P--------------------TVDKIKNLVYKNNKSDNPREDYLDVYVFGVGD-DVNKEELNDLASKKDNERHFFKLKDY 190 (198)
T ss_pred H--------------------HHHHHHHHHhcccccccchhcceeEEEEecCc-ccCHHHHHHHhcCCCCCceEEEeCCH
Confidence 0 0112222211 1244567777666654 46899999999999994 5555554
No 31
>cd01450 vWFA_subfamily_ECM Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=97.96 E-value=0.00012 Score=73.42 Aligned_cols=145 Identities=17% Similarity=0.159 Sum_probs=97.6
Q ss_pred EEEEEEcchhHHhhhHHHHHHHHHHHHHhcCCC-CCCcEEEEEEeCCeEEEEecCCCCCCceEeecCCccccccCCcccc
Q 001452 536 FFFLIDVSMNALQTGATAAACSAISQVISDLPE-GPRTMVGIATFDSTIHFYNLKRALQQPLMLIVPDVEDVYTPLQSDI 614 (1075)
Q Consensus 536 yvFvIDvS~~av~sG~l~~v~~aI~~~L~~Lp~-~~rt~VGiITFDs~VhfYnl~~~l~qpqmlVvsDldd~FvPl~~~l 614 (1075)
++|+||+|.+.-.. .++.+++.+.+.++.+.. +.+.+|+|++|++..+..- ++.+ .
T Consensus 3 i~~llD~S~Sm~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~li~f~~~~~~~~--------------~~~~-------~- 59 (161)
T cd01450 3 IVFLLDGSESVGPE-NFEKVKDFIEKLVEKLDIGPDKTRVGLVQYSDDVRVEF--------------SLND-------Y- 59 (161)
T ss_pred EEEEEeCCCCcCHH-HHHHHHHHHHHHHHheeeCCCceEEEEEEEcCCceEEE--------------ECCC-------C-
Confidence 57999999987532 567788888888887764 2468999999987543210 1110 0
Q ss_pred eeehHHhHHHHHHHHhhcCccccCCCCccchHHHHHHHHHHHHHhcC-------CEEEEEecCCCCcCcccccccccccC
Q 001452 615 IVPVSECRQHLELLLESIPSMFQNNRTAESAFGAAVKAAFLALKSTG-------GKLLVFQSVLPSVGIGALSAREAEGR 687 (1075)
Q Consensus 615 Lv~l~esr~~I~~lLd~Lp~~f~~~~~~~~~lG~AL~aA~~lL~~~G-------GkIivF~sg~Pt~GpG~L~~re~~~r 687 (1075)
.+++.+.+.|+.+.... ...+.++.||+.|.+.+.... ..|++|++|.++.+.
T Consensus 60 -----~~~~~~~~~i~~~~~~~----~~~t~~~~al~~a~~~~~~~~~~~~~~~~~iiliTDG~~~~~~----------- 119 (161)
T cd01450 60 -----KSKDDLLKAVKNLKYLG----GGGTNTGKALQYALEQLFSESNARENVPKVIIVLTDGRSDDGG----------- 119 (161)
T ss_pred -----CCHHHHHHHHHhcccCC----CCCccHHHHHHHHHHHhcccccccCCCCeEEEEECCCCCCCCc-----------
Confidence 02344555566554321 146889999999999887542 368888887654321
Q ss_pred CCCCCCccccccccchhHHHHHHHHHHHHhcCcEEEEEEecCCccCccccccccccc
Q 001452 688 SNISSGEKETHKLLQPADKTLKAMAIEFAEYQVCVDVFITTQTYVDIASISVIPKTT 744 (1075)
Q Consensus 688 ~~~~~gt~ke~~ll~pa~~FYk~LA~~~~~~gIsVDlFl~s~~~~DlatL~~La~~T 744 (1075)
-..++.+++.+.+|.|..+.+.. .|...|..|+..|
T Consensus 120 -------------------~~~~~~~~~~~~~v~v~~i~~g~--~~~~~l~~la~~~ 155 (161)
T cd01450 120 -------------------DPKEAAAKLKDEGIKVFVVGVGP--ADEEELREIASCP 155 (161)
T ss_pred -------------------chHHHHHHHHHCCCEEEEEeccc--cCHHHHHHHhCCC
Confidence 12455666777898888888766 7788888888887
No 32
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=97.96 E-value=0.00013 Score=77.39 Aligned_cols=142 Identities=17% Similarity=0.221 Sum_probs=94.5
Q ss_pred EEEEEEEcchhHHhh----hHHHHHHHHHHHHH----hcCCCCCCcEEEEEEeCC-eEEEEecCCCCCCceEeecCCccc
Q 001452 535 VFFFLIDVSMNALQT----GATAAACSAISQVI----SDLPEGPRTMVGIATFDS-TIHFYNLKRALQQPLMLIVPDVED 605 (1075)
Q Consensus 535 ~yvFvIDvS~~av~s----G~l~~v~~aI~~~L----~~Lp~~~rt~VGiITFDs-~VhfYnl~~~l~qpqmlVvsDldd 605 (1075)
+.+|+||+|.++.+. ..+++.++++...+ +..++ .+||||+|.+ .-++
T Consensus 5 a~vi~lD~S~sM~a~D~~PnRL~aak~~i~~~~~~f~~~np~---~~vGlv~fag~~a~v-------------------- 61 (187)
T cd01452 5 ATMICIDNSEYMRNGDYPPTRFQAQADAVNLICQAKTRSNPE---NNVGLMTMAGNSPEV-------------------- 61 (187)
T ss_pred EEEEEEECCHHHHcCCCCCCHHHHHHHHHHHHHHHHHhcCCC---ccEEEEEecCCceEE--------------------
Confidence 679999999987653 25778888777664 54444 5999999964 2211
Q ss_pred cccCCcccceeehHHhHHHHHHHHhhcCccccCCCCccchHHHHHHHHHHHHHhc-----CCEEEEEecCCCCcCccccc
Q 001452 606 VYTPLQSDIIVPVSECRQHLELLLESIPSMFQNNRTAESAFGAAVKAAFLALKST-----GGKLLVFQSVLPSVGIGALS 680 (1075)
Q Consensus 606 ~FvPl~~~lLv~l~esr~~I~~lLd~Lp~~f~~~~~~~~~lG~AL~aA~~lL~~~-----GGkIivF~sg~Pt~GpG~L~ 680 (1075)
++++..+...+...|+.+.. ..+..++.||+.|..+|++. ..||++|.++.-+
T Consensus 62 ---------~~plT~D~~~~~~~L~~i~~------~g~~~l~~AL~~A~~~L~~~~~~~~~~rivi~v~S~~~------- 119 (187)
T cd01452 62 ---------LVTLTNDQGKILSKLHDVQP------KGKANFITGIQIAQLALKHRQNKNQKQRIVAFVGSPIE------- 119 (187)
T ss_pred ---------EECCCCCHHHHHHHHHhCCC------CCcchHHHHHHHHHHHHhcCCCcCCcceEEEEEecCCc-------
Confidence 12233345666677776641 35567999999999999752 3488999876521
Q ss_pred ccccccCCCCCCCccccccccchhHHHHHHHHHHHHhcCcEEEEEEecCCccCcccccccccc
Q 001452 681 AREAEGRSNISSGEKETHKLLQPADKTLKAMAIEFAEYQVCVDVFITTQTYVDIASISVIPKT 743 (1075)
Q Consensus 681 ~re~~~r~~~~~gt~ke~~ll~pa~~FYk~LA~~~~~~gIsVDlFl~s~~~~DlatL~~La~~ 743 (1075)
+.+ .+ ..++++++++++|.||++.++...-+..-|..+.+.
T Consensus 120 --------------~d~-------~~-i~~~~~~lkk~~I~v~vI~~G~~~~~~~~l~~~~~~ 160 (187)
T cd01452 120 --------------EDE-------KD-LVKLAKRLKKNNVSVDIINFGEIDDNTEKLTAFIDA 160 (187)
T ss_pred --------------CCH-------HH-HHHHHHHHHHcCCeEEEEEeCCCCCCHHHHHHHHHH
Confidence 111 12 347899999999999999998664444444444333
No 33
>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.
Probab=97.95 E-value=0.00015 Score=78.59 Aligned_cols=168 Identities=18% Similarity=0.216 Sum_probs=104.8
Q ss_pred EEEEEEEcchhHHhhhHHHHHHHHHHHHHhcCCCC-CCcEEEEEEeCCeEEEEecCCCCCCceEeecCCccccccCCccc
Q 001452 535 VFFFLIDVSMNALQTGATAAACSAISQVISDLPEG-PRTMVGIATFDSTIHFYNLKRALQQPLMLIVPDVEDVYTPLQSD 613 (1075)
Q Consensus 535 ~yvFvIDvS~~av~sG~l~~v~~aI~~~L~~Lp~~-~rt~VGiITFDs~VhfYnl~~~l~qpqmlVvsDldd~FvPl~~~ 613 (1075)
-.+|+||.|.+.-... ++.+++.+++.++.|.-. ..++||||+|++.++..- ++.+.
T Consensus 4 DlvfllD~S~Sm~~~~-~~~~k~f~~~l~~~l~~~~~~~rvglv~fs~~~~~~~--------------~l~~~------- 61 (224)
T cd01475 4 DLVFLIDSSRSVRPEN-FELVKQFLNQIIDSLDVGPDATRVGLVQYSSTVKQEF--------------PLGRF------- 61 (224)
T ss_pred cEEEEEeCCCCCCHHH-HHHHHHHHHHHHHhcccCCCccEEEEEEecCceeEEe--------------ccccc-------
Confidence 4799999999864433 577888888888887532 358999999998765421 11110
Q ss_pred ceeehHHhHHHHHHHHhhcCccccCCCCccchHHHHHHHHHHHH-Hh-cC--------CE-EEEEecCCCCcCccccccc
Q 001452 614 IIVPVSECRQHLELLLESIPSMFQNNRTAESAFGAAVKAAFLAL-KS-TG--------GK-LLVFQSVLPSVGIGALSAR 682 (1075)
Q Consensus 614 lLv~l~esr~~I~~lLd~Lp~~f~~~~~~~~~lG~AL~aA~~lL-~~-~G--------Gk-IivF~sg~Pt~GpG~L~~r 682 (1075)
.+++.|.+.|+.|..+ ...+.+|.||..|...+ .. .| -| ||+|++|.++
T Consensus 62 ------~~~~~l~~~i~~i~~~-----~~~t~tg~AL~~a~~~~~~~~~g~r~~~~~~~kvvillTDG~s~--------- 121 (224)
T cd01475 62 ------KSKADLKRAVRRMEYL-----ETGTMTGLAIQYAMNNAFSEAEGARPGSERVPRVGIVVTDGRPQ--------- 121 (224)
T ss_pred ------CCHHHHHHHHHhCcCC-----CCCChHHHHHHHHHHHhCChhcCCCCCCCCCCeEEEEEcCCCCc---------
Confidence 1244556667766543 23467889999887643 21 11 13 4677666421
Q ss_pred ccccCCCCCCCccccccccchhHHHHHHHHHHHHhcCcEEEEEEecCCccCccccccccccccc-eEEEEcCCCcccchH
Q 001452 683 EAEGRSNISSGEKETHKLLQPADKTLKAMAIEFAEYQVCVDVFITTQTYVDIASISVIPKTTGG-QVYYYYPFSALSDPA 761 (1075)
Q Consensus 683 e~~~r~~~~~gt~ke~~ll~pa~~FYk~LA~~~~~~gIsVDlFl~s~~~~DlatL~~La~~TGG-~v~~Y~~F~~~~d~~ 761 (1075)
+ -+++.+.++.+.||.|-.+.+ ...|...|..|+..+++ .+++..+|+ +.+
T Consensus 122 ~-----------------------~~~~~a~~lk~~gv~i~~Vgv--G~~~~~~L~~ias~~~~~~~f~~~~~~---~l~ 173 (224)
T cd01475 122 D-----------------------DVSEVAAKARALGIEMFAVGV--GRADEEELREIASEPLADHVFYVEDFS---TIE 173 (224)
T ss_pred c-----------------------cHHHHHHHHHHCCcEEEEEeC--CcCCHHHHHHHhCCCcHhcEEEeCCHH---HHH
Confidence 0 024567778888866544444 45688899999987654 666666664 234
Q ss_pred HHHHHHHHhcc
Q 001452 762 KLYNDLRWNIT 772 (1075)
Q Consensus 762 kL~~dL~r~Lt 772 (1075)
++.++|...+.
T Consensus 174 ~~~~~l~~~~C 184 (224)
T cd01475 174 ELTKKFQGKIC 184 (224)
T ss_pred HHhhhcccccC
Confidence 55555554443
No 34
>PTZ00441 sporozoite surface protein 2 (SSP2); Provisional
Probab=97.93 E-value=0.00027 Score=85.26 Aligned_cols=197 Identities=10% Similarity=0.095 Sum_probs=113.4
Q ss_pred cEEEEEEEcchhHHhhhHHHHHHHHHHHHHhcCCC-CCCcEEEEEEeCCeEE-EEecCCCCCCceEeecCCccccccCCc
Q 001452 534 AVFFFLIDVSMNALQTGATAAACSAISQVISDLPE-GPRTMVGIATFDSTIH-FYNLKRALQQPLMLIVPDVEDVYTPLQ 611 (1075)
Q Consensus 534 p~yvFvIDvS~~av~sG~l~~v~~aI~~~L~~Lp~-~~rt~VGiITFDs~Vh-fYnl~~~l~qpqmlVvsDldd~FvPl~ 611 (1075)
.-++||||+|.+.-...+++.++..++.+++.+.. ..+++||+|+|++..+ ++.+.....
T Consensus 43 lDIvFLLD~SgSMg~~Nfle~AK~Fa~~LV~~l~Is~D~V~VgiV~FSd~~r~vfpL~s~~s------------------ 104 (576)
T PTZ00441 43 VDLYLLVDGSGSIGYHNWITHVIPMLMGLIQQLNLSDDAINLYMSLFSNNTTELIRLGSGAS------------------ 104 (576)
T ss_pred ceEEEEEeCCCccCCccHHHHHHHHHHHHHHHhccCCCceEEEEEEeCCCceEEEecCCCcc------------------
Confidence 35899999999886666777788888888887753 3468999999987653 333322110
Q ss_pred ccceeehHHhHHHHHHHHhhcCccccCCCCccchHHHHHHHHHHHHHhcC------CEEEEEecCCCCcCcccccccccc
Q 001452 612 SDIIVPVSECRQHLELLLESIPSMFQNNRTAESAFGAAVKAAFLALKSTG------GKLLVFQSVLPSVGIGALSAREAE 685 (1075)
Q Consensus 612 ~~lLv~l~esr~~I~~lLd~Lp~~f~~~~~~~~~lG~AL~aA~~lL~~~G------GkIivF~sg~Pt~GpG~L~~re~~ 685 (1075)
.+....+..|..++..+. ....+.++.||..+...+...+ +.||||++|.++-+ +
T Consensus 105 ----~Dk~~aL~~I~sL~~~~~------pgGgTnig~AL~~Aae~L~sr~~R~nvpKVVILLTDG~sns~-------~-- 165 (576)
T PTZ00441 105 ----KDKEQALIIVKSLRKTYL------PYGKTNMTDALLEVRKHLNDRVNRENAIQLVILMTDGIPNSK-------Y-- 165 (576)
T ss_pred ----ccHHHHHHHHHHHHhhcc------CCCCccHHHHHHHHHHHHhhcccccCCceEEEEEecCCCCCc-------c--
Confidence 011111222333333221 1346789999999988887543 56888887764310 0
Q ss_pred cCCCCCCCccccccccchhHHHHHHHHHHHHhcCcEEEEEEecCCccCcccccccc----ccccceEEEEcCCCcccchH
Q 001452 686 GRSNISSGEKETHKLLQPADKTLKAMAIEFAEYQVCVDVFITTQTYVDIASISVIP----KTTGGQVYYYYPFSALSDPA 761 (1075)
Q Consensus 686 ~r~~~~~gt~ke~~ll~pa~~FYk~LA~~~~~~gIsVDlFl~s~~~~DlatL~~La----~~TGG~v~~Y~~F~~~~d~~ 761 (1075)
+. .+.+..+.+.||.|-+|-++. ++|...+..|+ ..++|.+|.+.+|+. ..
T Consensus 166 --------------------dv-leaAq~LR~~GVeI~vIGVG~-g~n~e~LrlIAgC~p~~g~c~~Y~vadf~e---L~ 220 (576)
T PTZ00441 166 --------------------RA-LEESRKLKDRNVKLAVIGIGQ-GINHQFNRLLAGCRPREGKCKFYSDADWEE---AK 220 (576)
T ss_pred --------------------cH-HHHHHHHHHCCCEEEEEEeCC-CcCHHHHHHHhccCCCCCCCceEEeCCHHH---HH
Confidence 00 133556677888777776654 45555444444 334567777778742 23
Q ss_pred HHHHHHHHhccCCcc-------cc--ceEEEEeCCCceEE
Q 001452 762 KLYNDLRWNITRPQG-------FE--AVMRVRCSQGIQVQ 792 (1075)
Q Consensus 762 kL~~dL~r~Ltr~~g-------~~--a~mrVR~S~GL~V~ 792 (1075)
.+.+.|..-+..+.- |. ..+.+.|..|++..
T Consensus 221 ~ivk~LikkVC~eve~~a~c~~Ws~Ws~Cs~tCg~G~~~R 260 (576)
T PTZ00441 221 NLIKPFIAKVCTEVERTASCGPWDEWTPCSVTCGKGTHSR 260 (576)
T ss_pred HHHHHHHHHhcccccccccCCCCCCCCCCccccCCCceee
Confidence 444444443333211 11 12446677776654
No 35
>cd01480 vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=97.92 E-value=0.00015 Score=76.32 Aligned_cols=158 Identities=13% Similarity=0.078 Sum_probs=100.7
Q ss_pred EEEEEEEcchhHHhhhHHHHHHHHHHHHHhcCCC-------CCCcEEEEEEeCCeEEEEecCCCCCCceEeecCCccccc
Q 001452 535 VFFFLIDVSMNALQTGATAAACSAISQVISDLPE-------GPRTMVGIATFDSTIHFYNLKRALQQPLMLIVPDVEDVY 607 (1075)
Q Consensus 535 ~yvFvIDvS~~av~sG~l~~v~~aI~~~L~~Lp~-------~~rt~VGiITFDs~VhfYnl~~~l~qpqmlVvsDldd~F 607 (1075)
-.+||||.|.+.-.+. ++.+++.++..++.|.. ....+||+|+|++..++.-
T Consensus 4 dvv~vlD~S~Sm~~~~-~~~~k~~~~~~~~~l~~~~~~~i~~~~~rvglv~fs~~~~~~~-------------------- 62 (186)
T cd01480 4 DITFVLDSSESVGLQN-FDITKNFVKRVAERFLKDYYRKDPAGSWRVGVVQYSDQQEVEA-------------------- 62 (186)
T ss_pred eEEEEEeCCCccchhh-HHHHHHHHHHHHHHHhhhhccCCCCCceEEEEEEecCCceeeE--------------------
Confidence 4689999999875444 45567777777777621 2347999999987653210
Q ss_pred cCCcccceeehHHhHHHHHHHHhhcCccccCCCCccchHHHHHHHHHHHHHh----c-CCEEEEEecCCCCcCccccccc
Q 001452 608 TPLQSDIIVPVSECRQHLELLLESIPSMFQNNRTAESAFGAAVKAAFLALKS----T-GGKLLVFQSVLPSVGIGALSAR 682 (1075)
Q Consensus 608 vPl~~~lLv~l~esr~~I~~lLd~Lp~~f~~~~~~~~~lG~AL~aA~~lL~~----~-GGkIivF~sg~Pt~GpG~L~~r 682 (1075)
++.+. ..+++.+.+.|++|... ...+.+|.||+.|...+.. . ...||++++|..+.+.
T Consensus 63 -~l~~~-----~~~~~~l~~~i~~l~~~-----gg~T~~~~AL~~a~~~l~~~~~~~~~~~iillTDG~~~~~~------ 125 (186)
T cd01480 63 -GFLRD-----IRNYTSLKEAVDNLEYI-----GGGTFTDCALKYATEQLLEGSHQKENKFLLVITDGHSDGSP------ 125 (186)
T ss_pred -ecccc-----cCCHHHHHHHHHhCccC-----CCCccHHHHHHHHHHHHhccCCCCCceEEEEEeCCCcCCCc------
Confidence 00000 12355666777777532 3568999999999998864 1 2356666666532100
Q ss_pred ccccCCCCCCCccccccccchhHHHHHHHHHHHHhcCcEEEEEEecCCccCccccccccccccceEEEEcCCC
Q 001452 683 EAEGRSNISSGEKETHKLLQPADKTLKAMAIEFAEYQVCVDVFITTQTYVDIASISVIPKTTGGQVYYYYPFS 755 (1075)
Q Consensus 683 e~~~r~~~~~gt~ke~~ll~pa~~FYk~LA~~~~~~gIsVDlFl~s~~~~DlatL~~La~~TGG~v~~Y~~F~ 755 (1075)
..-..+.+.++.+.||.|-.+.+.. .|...|..++...+|. |+..+|.
T Consensus 126 ----------------------~~~~~~~~~~~~~~gi~i~~vgig~--~~~~~L~~IA~~~~~~-~~~~~~~ 173 (186)
T cd01480 126 ----------------------DGGIEKAVNEADHLGIKIFFVAVGS--QNEEPLSRIACDGKSA-LYRENFA 173 (186)
T ss_pred ----------------------chhHHHHHHHHHHCCCEEEEEecCc--cchHHHHHHHcCCcch-hhhcchh
Confidence 0112455667788898877777655 7888899998887776 5556654
No 36
>PF13768 VWA_3: von Willebrand factor type A domain
Probab=97.92 E-value=0.00013 Score=73.87 Aligned_cols=150 Identities=19% Similarity=0.280 Sum_probs=99.7
Q ss_pred EEEEEEcchhHHhhhHHHHHHHHHHHHHhcCCCCCCcEEEEEEeCCeEEEEecCCCCCCceEeecCCccccccCCcccce
Q 001452 536 FFFLIDVSMNALQTGATAAACSAISQVISDLPEGPRTMVGIATFDSTIHFYNLKRALQQPLMLIVPDVEDVYTPLQSDII 615 (1075)
Q Consensus 536 yvFvIDvS~~av~sG~l~~v~~aI~~~L~~Lp~~~rt~VGiITFDs~VhfYnl~~~l~qpqmlVvsDldd~FvPl~~~lL 615 (1075)
.|||||+|.++.... +.++++|+.+|+.|..+ .++.||+||+.++.|. .. +
T Consensus 3 vvilvD~S~Sm~g~~--~~~k~al~~~l~~L~~~--d~fnii~f~~~~~~~~--~~-----------------------~ 53 (155)
T PF13768_consen 3 VVILVDTSGSMSGEK--ELVKDALRAILRSLPPG--DRFNIIAFGSSVRPLF--PG-----------------------L 53 (155)
T ss_pred EEEEEeCCCCCCCcH--HHHHHHHHHHHHhCCCC--CEEEEEEeCCEeeEcc--hh-----------------------H
Confidence 689999999885433 88999999999999865 6999999999876543 10 0
Q ss_pred eeh-HHhHHHHHHHHhhcCccccCCCCccchHHHHHHHHHHHHHh--cCCEEEEEecCCCCcCcccccccccccCCCCCC
Q 001452 616 VPV-SECRQHLELLLESIPSMFQNNRTAESAFGAAVKAAFLALKS--TGGKLLVFQSVLPSVGIGALSAREAEGRSNISS 692 (1075)
Q Consensus 616 v~l-~esr~~I~~lLd~Lp~~f~~~~~~~~~lG~AL~aA~~lL~~--~GGkIivF~sg~Pt~GpG~L~~re~~~r~~~~~ 692 (1075)
+.. .+.++...+.|+++.. ....+.+..||+.|+..+.. .--.|+++++|.++.+.
T Consensus 54 ~~~~~~~~~~a~~~I~~~~~-----~~G~t~l~~aL~~a~~~~~~~~~~~~IilltDG~~~~~~---------------- 112 (155)
T PF13768_consen 54 VPATEENRQEALQWIKSLEA-----NSGGTDLLAALRAALALLQRPGCVRAIILLTDGQPVSGE---------------- 112 (155)
T ss_pred HHHhHHHHHHHHHHHHHhcc-----cCCCccHHHHHHHHHHhcccCCCccEEEEEEeccCCCCH----------------
Confidence 111 1234444444554432 25667899999999988632 34578888877652211
Q ss_pred CccccccccchhHHHHHHHHHHHHhcCcEEEEEEecCCccCccccccccccccceEEE
Q 001452 693 GEKETHKLLQPADKTLKAMAIEFAEYQVCVDVFITTQTYVDIASISVIPKTTGGQVYY 750 (1075)
Q Consensus 693 gt~ke~~ll~pa~~FYk~LA~~~~~~gIsVDlFl~s~~~~DlatL~~La~~TGG~v~~ 750 (1075)
+...+.+. .+. ..+.|+.|.+.. ..|-..|..|++.|||..++
T Consensus 113 ------------~~i~~~v~-~~~-~~~~i~~~~~g~-~~~~~~L~~LA~~~~G~~~f 155 (155)
T PF13768_consen 113 ------------EEILDLVR-RAR-GHIRIFTFGIGS-DADADFLRELARATGGSFHF 155 (155)
T ss_pred ------------HHHHHHHH-hcC-CCceEEEEEECC-hhHHHHHHHHHHcCCCEEEC
Confidence 12222222 222 457788888766 45678899999999998763
No 37
>cd01471 vWA_micronemal_protein Micronemal proteins: The Toxoplasma lytic cycle begins when the parasite actively invades a target cell. In association with invasion, T. gondii sequentially discharges three sets of secretory organelles beginning with the micronemes, which contain adhesive proteins involved in parasite attachment to a host cell. Deployed as protein complexes, several micronemal proteins possess vertebrate-derived adhesive sequences that function in binding receptors. The VWA domain likely mediates the protein-protein interactions of these with their interacting partners.
Probab=97.90 E-value=0.00024 Score=74.25 Aligned_cols=149 Identities=13% Similarity=0.111 Sum_probs=92.3
Q ss_pred EEEEEEcchhHHhhhHHHHHHHHHHHHHhcCCC-CCCcEEEEEEeCCeEEE-EecCCCCCCceEeecCCccccccCCccc
Q 001452 536 FFFLIDVSMNALQTGATAAACSAISQVISDLPE-GPRTMVGIATFDSTIHF-YNLKRALQQPLMLIVPDVEDVYTPLQSD 613 (1075)
Q Consensus 536 yvFvIDvS~~av~sG~l~~v~~aI~~~L~~Lp~-~~rt~VGiITFDs~Vhf-Ynl~~~l~qpqmlVvsDldd~FvPl~~~ 613 (1075)
++||||+|.+.-....++.+++.++..++.+.. ..+.+||+|+|++..+. +++...
T Consensus 3 v~~vlD~SgSm~~~~~~~~~k~~~~~~~~~~~~~~~~~~vglv~Fs~~~~~~~~l~~~---------------------- 60 (186)
T cd01471 3 LYLLVDGSGSIGYSNWVTHVVPFLHTFVQNLNISPDEINLYLVTFSTNAKELIRLSSP---------------------- 60 (186)
T ss_pred EEEEEeCCCCccchhhHHHHHHHHHHHHHhcccCCCceEEEEEEecCCceEEEECCCc----------------------
Confidence 689999999887665577888888888888753 24579999999887652 222210
Q ss_pred ceeehHHhHHHHHHHHhhcCccccCCCCccchHHHHHHHHHHHHHhc-C------CEEEEEecCCCCcCccccccccccc
Q 001452 614 IIVPVSECRQHLELLLESIPSMFQNNRTAESAFGAAVKAAFLALKST-G------GKLLVFQSVLPSVGIGALSAREAEG 686 (1075)
Q Consensus 614 lLv~l~esr~~I~~lLd~Lp~~f~~~~~~~~~lG~AL~aA~~lL~~~-G------GkIivF~sg~Pt~GpG~L~~re~~~ 686 (1075)
..+.++.+.++++.|..+. .....+.++.||..|.+.+... + ..|+++++|.++.+.
T Consensus 61 ----~~~~~~~~~~~i~~l~~~~--~~~G~T~l~~aL~~a~~~l~~~~~~r~~~~~~villTDG~~~~~~---------- 124 (186)
T cd01471 61 ----NSTNKDLALNAIRALLSLY--YPNGSTNTTSALLVVEKHLFDTRGNRENAPQLVIIMTDGIPDSKF---------- 124 (186)
T ss_pred ----cccchHHHHHHHHHHHhCc--CCCCCccHHHHHHHHHHHhhccCCCcccCceEEEEEccCCCCCCc----------
Confidence 0012222333344332221 1245678999999999999652 1 257777777653210
Q ss_pred CCCCCCCccccccccchhHHHHHHHHHHHHhcCcEEEEEEecCCccCcccccccccc
Q 001452 687 RSNISSGEKETHKLLQPADKTLKAMAIEFAEYQVCVDVFITTQTYVDIASISVIPKT 743 (1075)
Q Consensus 687 r~~~~~gt~ke~~ll~pa~~FYk~LA~~~~~~gIsVDlFl~s~~~~DlatL~~La~~ 743 (1075)
. . .+.++++.+.||.|-++.+.. ..|...|..|+..
T Consensus 125 -----------~-------~--~~~a~~l~~~gv~v~~igiG~-~~d~~~l~~ia~~ 160 (186)
T cd01471 125 -----------R-------T--LKEARKLRERGVIIAVLGVGQ-GVNHEENRSLVGC 160 (186)
T ss_pred -----------c-------h--hHHHHHHHHCCCEEEEEEeeh-hhCHHHHHHhcCC
Confidence 0 0 124556667788777766653 4676667666554
No 38
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=97.82 E-value=0.00031 Score=86.60 Aligned_cols=174 Identities=17% Similarity=0.214 Sum_probs=116.6
Q ss_pred CCcEEEEEEEcchhHHhhhHHHHHHHHHHHHHhcCCCCCCcEEEEEEeCCeEEEEecCCCCCCceEeecCCccccccCCc
Q 001452 532 MPAVFFFLIDVSMNALQTGATAAACSAISQVISDLPEGPRTMVGIATFDSTIHFYNLKRALQQPLMLIVPDVEDVYTPLQ 611 (1075)
Q Consensus 532 ~pp~yvFvIDvS~~av~sG~l~~v~~aI~~~L~~Lp~~~rt~VGiITFDs~VhfYnl~~~l~qpqmlVvsDldd~FvPl~ 611 (1075)
..-.++||||+|.++. ..-++.+++++...|..+-. .+-+||||+|++...-+ + +|
T Consensus 406 ~~~~v~fvvD~SGSM~-~~rl~~aK~av~~Ll~~~~~-~~D~v~Li~F~~~~a~~------------~--------lp-- 461 (589)
T TIGR02031 406 SGRLLIFVVDASGSAA-VARMSEAKGAVELLLGEAYV-HRDQVSLIAFRGTAAEV------------L--------LP-- 461 (589)
T ss_pred cCceEEEEEECCCCCC-hHHHHHHHHHHHHHHHhhcc-CCCEEEEEEECCCCceE------------E--------CC--
Confidence 4557889999999873 33578888888888875422 23589999997543110 1 11
Q ss_pred ccceeehHHhHHHHHHHHhhcCccccCCCCccchHHHHHHHHHHHHHhc---CC--EEEEEecCCCCcCccccccccccc
Q 001452 612 SDIIVPVSECRQHLELLLESIPSMFQNNRTAESAFGAAVKAAFLALKST---GG--KLLVFQSVLPSVGIGALSAREAEG 686 (1075)
Q Consensus 612 ~~lLv~l~esr~~I~~lLd~Lp~~f~~~~~~~~~lG~AL~aA~~lL~~~---GG--kIivF~sg~Pt~GpG~L~~re~~~ 686 (1075)
...+++.+...|+.|+. ...+.++.||..|.+.++.. ++ .|+++++|.+|+|.+....-+..
T Consensus 462 ------~t~~~~~~~~~L~~l~~------gGgTpL~~gL~~A~~~~~~~~~~~~~~~ivllTDG~~nv~~~~~~~~~~~- 528 (589)
T TIGR02031 462 ------PSRSVEQAKRRLDVLPG------GGGTPLAAGLAAAFQTALQARSSGGTPTIVLITDGRGNIPLDGDPESIKA- 528 (589)
T ss_pred ------CCCCHHHHHHHHhcCCC------CCCCcHHHHHHHHHHHHHHhcccCCceEEEEECCCCCCCCCCcccccccc-
Confidence 11123334455676653 45688999999999998742 33 69999999999876311000000
Q ss_pred CCCCCCCccccccccchhHHHHHHHHHHHHhcCcEEEEEEecCCccCccccccccccccceEEEEcCCC
Q 001452 687 RSNISSGEKETHKLLQPADKTLKAMAIEFAEYQVCVDVFITTQTYVDIASISVIPKTTGGQVYYYYPFS 755 (1075)
Q Consensus 687 r~~~~~gt~ke~~ll~pa~~FYk~LA~~~~~~gIsVDlFl~s~~~~DlatL~~La~~TGG~v~~Y~~F~ 755 (1075)
. .....+-...++..+.+.||.+-++-+...+.+..-+..|++..||..|+.++-+
T Consensus 529 --------~-----~~~~~~~~~~~a~~~~~~gi~~~vid~~~~~~~~~~~~~lA~~~~g~y~~l~~~~ 584 (589)
T TIGR02031 529 --------D-----REQAAEEALALARKIREAGMPALVIDTAMRFVSTGFAQKLARKMGAHYIYLPNAT 584 (589)
T ss_pred --------c-----chhHHHHHHHHHHHHHhcCCeEEEEeCCCCCccchHHHHHHHhcCCcEEeCCCCC
Confidence 0 1112334467788899999887777777777777778899999999999988743
No 39
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=97.77 E-value=0.00019 Score=89.23 Aligned_cols=159 Identities=21% Similarity=0.269 Sum_probs=108.5
Q ss_pred CcEEEEEEEcchhHHhhhHHHHHHHHHHHHHhcCCCCCCcEEEEEEeCCe-EEEEecCCCCCCceEeecCCccccccCCc
Q 001452 533 PAVFFFLIDVSMNALQTGATAAACSAISQVISDLPEGPRTMVGIATFDST-IHFYNLKRALQQPLMLIVPDVEDVYTPLQ 611 (1075)
Q Consensus 533 pp~yvFvIDvS~~av~sG~l~~v~~aI~~~L~~Lp~~~rt~VGiITFDs~-VhfYnl~~~l~qpqmlVvsDldd~FvPl~ 611 (1075)
.-.++||||+|.++...+-++.++.++...|..... .+.+||||+|++. ..+ .+|
T Consensus 465 ~~~vv~vvD~SgSM~~~~rl~~ak~a~~~ll~~a~~-~~D~v~lI~F~g~~a~~---------------------~~p-- 520 (633)
T TIGR02442 465 GNLVIFVVDASGSMAARGRMAAAKGAVLSLLRDAYQ-KRDKVALITFRGEEAEV---------------------LLP-- 520 (633)
T ss_pred CceEEEEEECCccCCCccHHHHHHHHHHHHHHHhhc-CCCEEEEEEECCCCceE---------------------EcC--
Confidence 457889999999886544577777777777764322 2469999999743 211 111
Q ss_pred ccceeehHHhHHHHHHHHhhcCccccCCCCccchHHHHHHHHHHHHHh-------cCCEEEEEecCCCCcC-cccccccc
Q 001452 612 SDIIVPVSECRQHLELLLESIPSMFQNNRTAESAFGAAVKAAFLALKS-------TGGKLLVFQSVLPSVG-IGALSARE 683 (1075)
Q Consensus 612 ~~lLv~l~esr~~I~~lLd~Lp~~f~~~~~~~~~lG~AL~aA~~lL~~-------~GGkIivF~sg~Pt~G-pG~L~~re 683 (1075)
+..+++.+...|+.|+. ...+.++.||..|..+++. ..+.|+++++|..|.+ .| .
T Consensus 521 ------~t~~~~~~~~~L~~l~~------gG~Tpl~~aL~~A~~~l~~~~~~~~~~~~~vvliTDG~~n~~~~~-----~ 583 (633)
T TIGR02442 521 ------PTSSVELAARRLEELPT------GGRTPLAAGLLKAAEVLSNELLRDDDGRPLLVVITDGRANVADGG-----E 583 (633)
T ss_pred ------CCCCHHHHHHHHHhCCC------CCCCCHHHHHHHHHHHHHHhhccCCCCceEEEEECCCCCCCCCCC-----C
Confidence 22334455566777753 4568899999999998883 2367999999998875 12 0
Q ss_pred cccCCCCCCCccccccccchhHHHHHHHHHHHHhcCcEEEEEEecCCccCccccccccccccceEEEE
Q 001452 684 AEGRSNISSGEKETHKLLQPADKTLKAMAIEFAEYQVCVDVFITTQTYVDIASISVIPKTTGGQVYYY 751 (1075)
Q Consensus 684 ~~~r~~~~~gt~ke~~ll~pa~~FYk~LA~~~~~~gIsVDlFl~s~~~~DlatL~~La~~TGG~v~~Y 751 (1075)
+. ..+ -..++..+.+.+|-+.++-+...+++...+..||+.+||+.|+.
T Consensus 584 ~~------------------~~~-~~~~a~~l~~~~i~~~vIdt~~~~~~~~~~~~lA~~~gg~y~~l 632 (633)
T TIGR02442 584 PP------------------TDD-ARTIAAKLAARGILFVVIDTESGFVRLGLAEDLARALGGEYVRL 632 (633)
T ss_pred Ch------------------HHH-HHHHHHHHHhcCCeEEEEeCCCCCcchhHHHHHHHhhCCeEEec
Confidence 10 011 14567777777887777766667777888999999999998864
No 40
>PF00092 VWA: von Willebrand factor type A domain; InterPro: IPR002035 The von Willebrand factor is a large multimeric glycoprotein found in blood plasma. Mutant forms are involved in the aetiology of bleeding disorders []. In von Willebrand factor, the type A domain (vWF) is the prototype for a protein superfamily. The vWF domain is found in various plasma proteins: complement factors B, C2, CR3 and CR4; the integrins (I-domains); collagen types VI, VII, XII and XIV; and other extracellular proteins [, , ]. Although the majority of VWA-containing proteins are extracellular, the most ancient ones present in all eukaryotes are all intracellular proteins involved in functions such as transcription, DNA repair, ribosomal and membrane transport and the proteasome. A common feature appears to be involvement in multiprotein complexes. Proteins that incorporate vWF domains participate in numerous biological events (e.g. cell adhesion, migration, homing, pattern formation, and signal transduction), involving interaction with a large array of ligands []. A number of human diseases arise from mutations in VWA domains. Secondary structure prediction from 75 aligned vWF sequences has revealed a largely alternating sequence of alpha-helices and beta-strands []. Fold recognition algorithms were used to score sequence compatibility with a library of known structures: the vWF domain fold was predicted to be a doubly-wound, open, twisted beta-sheet flanked by alpha-helices []. 3D structures have been determined for the I-domains of integrins CD11b (with bound magnesium) [] and CD11a (with bound manganese) []. The domain adopts a classic alpha/beta Rossmann fold and contains an unusual metal ion coordination site at its surface. It has been suggested that this site represents a general metal ion-dependent adhesion site (MIDAS) for binding protein ligands []. The residues constituting the MIDAS motif in the CD11b and CD11a I-domains are completely conserved, but the manner in which the metal ion is coordinated differs slightly [].; GO: 0005515 protein binding; PDB: 2XGG_B 3ZQK_B 3GXB_A 3PPV_A 3PPX_A 3PPW_A 3PPY_A 1CQP_B 3TCX_B 2ICA_A ....
Probab=97.77 E-value=0.00036 Score=71.22 Aligned_cols=156 Identities=23% Similarity=0.283 Sum_probs=94.4
Q ss_pred EEEEEEcchhHHhhhHHHHHHHHHHHHHhcCC-CCCCcEEEEEEeCCeEEEEecCCCCCCceEeecCCccccccCCcccc
Q 001452 536 FFFLIDVSMNALQTGATAAACSAISQVISDLP-EGPRTMVGIATFDSTIHFYNLKRALQQPLMLIVPDVEDVYTPLQSDI 614 (1075)
Q Consensus 536 yvFvIDvS~~av~sG~l~~v~~aI~~~L~~Lp-~~~rt~VGiITFDs~VhfYnl~~~l~qpqmlVvsDldd~FvPl~~~l 614 (1075)
.+|+||.|.+.-..+ ++.+++.|...++.+. ...+.|||||+|++..+.+- ++.+.
T Consensus 2 ivflvD~S~sm~~~~-~~~~~~~v~~~i~~~~~~~~~~rv~iv~f~~~~~~~~--------------~~~~~-------- 58 (178)
T PF00092_consen 2 IVFLVDTSGSMSGDN-FEKAKQFVKSIISRLSISNNGTRVGIVTFSDSARVLF--------------SLTDY-------- 58 (178)
T ss_dssp EEEEEE-STTSCHHH-HHHHHHHHHHHHHHSTBSTTSEEEEEEEESSSEEEEE--------------ETTSH--------
T ss_pred EEEEEeCCCCCchHH-HHHHHHHHHHHHHhhhccccccccceeeeeccccccc--------------ccccc--------
Confidence 589999999875544 5668899999998773 34568999999998876221 11110
Q ss_pred eeehHHhHHHHHHHH-hhcCccccCCCCccchHHHHHHHHHHHHHhc--C------CEEEEEecCCCCcCcccccccccc
Q 001452 615 IVPVSECRQHLELLL-ESIPSMFQNNRTAESAFGAAVKAAFLALKST--G------GKLLVFQSVLPSVGIGALSAREAE 685 (1075)
Q Consensus 615 Lv~l~esr~~I~~lL-d~Lp~~f~~~~~~~~~lG~AL~aA~~lL~~~--G------GkIivF~sg~Pt~GpG~L~~re~~ 685 (1075)
++.+.+.+.+ +.+.. ....+.+|.||+.|.+.+... | .-||++++|.++.+.
T Consensus 59 -----~~~~~~~~~i~~~~~~-----~~g~t~~~~aL~~a~~~l~~~~~~~r~~~~~~iiliTDG~~~~~~--------- 119 (178)
T PF00092_consen 59 -----QSKNDLLNAINDSIPS-----SGGGTNLGAALKFAREQLFSSNNGGRPNSPKVIILITDGNSNDSD--------- 119 (178)
T ss_dssp -----SSHHHHHHHHHTTGGC-----CBSSB-HHHHHHHHHHHTTSGGGTTGTTSEEEEEEEESSSSSSHS---------
T ss_pred -----cccccccccccccccc-----cchhhhHHHHHhhhhhcccccccccccccccceEEEEeecccCCc---------
Confidence 1122222222 33322 345677999999999998643 1 246677776543211
Q ss_pred cCCCCCCCccccccccchhHHHHHHHHHHHHhcCcEEEEEEecCCccCcccccccccc--ccceEEEEcCCC
Q 001452 686 GRSNISSGEKETHKLLQPADKTLKAMAIEFAEYQVCVDVFITTQTYVDIASISVIPKT--TGGQVYYYYPFS 755 (1075)
Q Consensus 686 ~r~~~~~gt~ke~~ll~pa~~FYk~LA~~~~~~gIsVDlFl~s~~~~DlatL~~La~~--TGG~v~~Y~~F~ 755 (1075)
. ....+..+.+. ..|.+|.++....|...|..|+.. .++++++..+|.
T Consensus 120 ----------~-----------~~~~~~~~~~~-~~i~~~~ig~~~~~~~~l~~la~~~~~~~~~~~~~~~~ 169 (178)
T PF00092_consen 120 ----------S-----------PSEEAANLKKS-NGIKVIAIGIDNADNEELRELASCPTSEGHVFYLADFS 169 (178)
T ss_dssp ----------G-----------HHHHHHHHHHH-CTEEEEEEEESCCHHHHHHHHSHSSTCHHHEEEESSHH
T ss_pred ----------c-----------hHHHHHHHHHh-cCcEEEEEecCcCCHHHHHHHhCCCCCCCcEEEcCCHH
Confidence 0 00111112221 556777776677888888888855 447888887764
No 41
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=97.75 E-value=0.00063 Score=83.58 Aligned_cols=174 Identities=14% Similarity=0.159 Sum_probs=113.8
Q ss_pred CCcEEEEEEEcchhHHhhhHHHHHHHHHHHHHhcCCCCCCcEEEEEEeCCe-EEEEecCCCCCCceEeecCCccccccCC
Q 001452 532 MPAVFFFLIDVSMNALQTGATAAACSAISQVISDLPEGPRTMVGIATFDST-IHFYNLKRALQQPLMLIVPDVEDVYTPL 610 (1075)
Q Consensus 532 ~pp~yvFvIDvS~~av~sG~l~~v~~aI~~~L~~Lp~~~rt~VGiITFDs~-VhfYnl~~~l~qpqmlVvsDldd~FvPl 610 (1075)
..-.++||||+|.++.. .-+..++.+++..|++.-. .+-+|++|+|++. ..+ + +|
T Consensus 400 ~~~~vvfvvD~SGSM~~-~rl~~aK~a~~~ll~~ay~-~rD~v~lI~F~g~~a~~-------------~--------lp- 455 (584)
T PRK13406 400 SETTTIFVVDASGSAAL-HRLAEAKGAVELLLAEAYV-RRDQVALVAFRGRGAEL-------------L--------LP- 455 (584)
T ss_pred CCccEEEEEECCCCCcH-hHHHHHHHHHHHHHHhhcC-CCCEEEEEEECCCceeE-------------E--------cC-
Confidence 34689999999998743 3678889888888866422 3459999999654 311 1 11
Q ss_pred cccceeehHHhHHHHHHHHhhcCccccCCCCccchHHHHHHHHHHHHHhc---C--CEEEEEecCCCCcCcccccccccc
Q 001452 611 QSDIIVPVSECRQHLELLLESIPSMFQNNRTAESAFGAAVKAAFLALKST---G--GKLLVFQSVLPSVGIGALSAREAE 685 (1075)
Q Consensus 611 ~~~lLv~l~esr~~I~~lLd~Lp~~f~~~~~~~~~lG~AL~aA~~lL~~~---G--GkIivF~sg~Pt~GpG~L~~re~~ 685 (1075)
...+.+.+...|+.|+ ....+.++.||..|.++++.. | -.|+++++|..|.|.+.-..+.+.
T Consensus 456 -------pT~~~~~~~~~L~~l~------~gGgTpL~~gL~~A~~~l~~~~~~~~~~~iVLlTDG~~n~~~~~~~~~~~~ 522 (584)
T PRK13406 456 -------PTRSLVRAKRSLAGLP------GGGGTPLAAGLDAAAALALQVRRKGMTPTVVLLTDGRANIARDGTAGRAQA 522 (584)
T ss_pred -------CCcCHHHHHHHHhcCC------CCCCChHHHHHHHHHHHHHHhccCCCceEEEEEeCCCCCCCccccccccch
Confidence 1113334455566665 346789999999999988642 2 478899999998876321111110
Q ss_pred cCCCCCCCccccccccchhHHHHHHHHHHHHhcCcEEEEEEecCCccCccccccccccccceEEEEcCCCcccchHHHHH
Q 001452 686 GRSNISSGEKETHKLLQPADKTLKAMAIEFAEYQVCVDVFITTQTYVDIASISVIPKTTGGQVYYYYPFSALSDPAKLYN 765 (1075)
Q Consensus 686 ~r~~~~~gt~ke~~ll~pa~~FYk~LA~~~~~~gIsVDlFl~s~~~~DlatL~~La~~TGG~v~~Y~~F~~~~d~~kL~~ 765 (1075)
..+ =..++..+.+.+|.+-++-+.... ...+..|++.+||+.|..++- +.+.+.+
T Consensus 523 ------------------~~~-~~~~a~~~~~~gi~~~vId~g~~~--~~~~~~LA~~~gg~y~~l~~~----~a~~~~~ 577 (584)
T PRK13406 523 ------------------EED-ALAAARALRAAGLPALVIDTSPRP--QPQARALAEAMGARYLPLPRA----DAGRLSQ 577 (584)
T ss_pred ------------------hhH-HHHHHHHHHhcCCeEEEEecCCCC--cHHHHHHHHhcCCeEEECCCC----CHHHHHH
Confidence 001 145677788888876666665444 344789999999999999874 3445544
Q ss_pred HH
Q 001452 766 DL 767 (1075)
Q Consensus 766 dL 767 (1075)
-.
T Consensus 578 ~v 579 (584)
T PRK13406 578 AV 579 (584)
T ss_pred HH
Confidence 33
No 42
>cd01469 vWA_integrins_alpha_subunit Integrins are a class of adhesion receptors that link the extracellular matrix to the cytoskeleton and cooperate with growth factor receptors to promote celll survival, cell cycle progression and cell migration. Integrins consist of an alpha and a beta sub-unit. Each sub-unit has a large extracellular portion, a single transmembrane segment and a short cytoplasmic domain. The N-terminal domains of the alpha and beta subunits associate to form the integrin headpiece, which contains the ligand binding site, whereas the C-terminal segments traverse the plasma membrane and mediate interaction with the cytoskeleton and with signalling proteins.The VWA domains present in the alpha subunits of integrins seem to be a chordate specific radiation of the gene family being found only in vertebrates. They mediate protein-protein interactions.
Probab=97.74 E-value=0.00081 Score=70.23 Aligned_cols=156 Identities=14% Similarity=0.171 Sum_probs=99.3
Q ss_pred EEEEEEcchhHHhhhHHHHHHHHHHHHHhcCCCC-CCcEEEEEEeCCeEEEE-ecCCCCCCceEeecCCccccccCCccc
Q 001452 536 FFFLIDVSMNALQTGATAAACSAISQVISDLPEG-PRTMVGIATFDSTIHFY-NLKRALQQPLMLIVPDVEDVYTPLQSD 613 (1075)
Q Consensus 536 yvFvIDvS~~av~sG~l~~v~~aI~~~L~~Lp~~-~rt~VGiITFDs~VhfY-nl~~~l~qpqmlVvsDldd~FvPl~~~ 613 (1075)
++|+||.|.+.-.. -++.+++.++..++.+..+ ..+|||+|+|++..++. ++. |..
T Consensus 3 i~fvlD~S~S~~~~-~f~~~k~fi~~~i~~l~~~~~~~rvgvv~fs~~~~~~~~l~------------~~~--------- 60 (177)
T cd01469 3 IVFVLDGSGSIYPD-DFQKVKNFLSTVMKKLDIGPTKTQFGLVQYSESFRTEFTLN------------EYR--------- 60 (177)
T ss_pred EEEEEeCCCCCCHH-HHHHHHHHHHHHHHHcCcCCCCcEEEEEEECCceeEEEecC------------ccC---------
Confidence 68999999986443 3567888888888888753 35899999998876431 111 111
Q ss_pred ceeehHHhHHHHHHHHhhcCccccCCCCccchHHHHHHHHHHHH--HhcCC------EEEEEecCCCCcCcccccccccc
Q 001452 614 IIVPVSECRQHLELLLESIPSMFQNNRTAESAFGAAVKAAFLAL--KSTGG------KLLVFQSVLPSVGIGALSAREAE 685 (1075)
Q Consensus 614 lLv~l~esr~~I~~lLd~Lp~~f~~~~~~~~~lG~AL~aA~~lL--~~~GG------kIivF~sg~Pt~GpG~L~~re~~ 685 (1075)
+.+.+.+.++.+... ...+.+|.||+.|...+ ...|. -++++++|..+-+.
T Consensus 61 -------~~~~~~~~i~~~~~~-----~g~T~~~~AL~~a~~~l~~~~~g~R~~~~kv~illTDG~~~~~~--------- 119 (177)
T cd01469 61 -------TKEEPLSLVKHISQL-----LGLTNTATAIQYVVTELFSESNGARKDATKVLVVITDGESHDDP--------- 119 (177)
T ss_pred -------CHHHHHHHHHhCccC-----CCCccHHHHHHHHHHHhcCcccCCCCCCCeEEEEEeCCCCCCcc---------
Confidence 122234455555432 23378999999998876 22232 36777776543111
Q ss_pred cCCCCCCCccccccccchhHHHHHHHHHHHHhcCcEEEEEEecCCc---cCccccccccccccc-eEEEEcCCC
Q 001452 686 GRSNISSGEKETHKLLQPADKTLKAMAIEFAEYQVCVDVFITTQTY---VDIASISVIPKTTGG-QVYYYYPFS 755 (1075)
Q Consensus 686 ~r~~~~~gt~ke~~ll~pa~~FYk~LA~~~~~~gIsVDlFl~s~~~---~DlatL~~La~~TGG-~v~~Y~~F~ 755 (1075)
. .++.+.++.+.||.|-.+.+...+ .+..+|..++..+++ ++|...+|+
T Consensus 120 --------~-------------~~~~~~~~k~~gv~v~~Vgvg~~~~~~~~~~~L~~ias~p~~~h~f~~~~~~ 172 (177)
T cd01469 120 --------L-------------LKDVIPQAEREGIIRYAIGVGGHFQRENSREELKTIASKPPEEHFFNVTDFA 172 (177)
T ss_pred --------c-------------cHHHHHHHHHCCcEEEEEEecccccccccHHHHHHHhcCCcHHhEEEecCHH
Confidence 0 034555677789887777776643 346888888888764 666666663
No 43
>cd01482 vWA_collagen_alphaI-XII-like Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=97.74 E-value=0.00059 Score=70.08 Aligned_cols=151 Identities=13% Similarity=0.141 Sum_probs=93.3
Q ss_pred EEEEEEcchhHHhhhHHHHHHHHHHHHHhcCCC-CCCcEEEEEEeCCeEEEEecCCCCCCceEeecCCccccccCCcccc
Q 001452 536 FFFLIDVSMNALQTGATAAACSAISQVISDLPE-GPRTMVGIATFDSTIHFYNLKRALQQPLMLIVPDVEDVYTPLQSDI 614 (1075)
Q Consensus 536 yvFvIDvS~~av~sG~l~~v~~aI~~~L~~Lp~-~~rt~VGiITFDs~VhfYnl~~~l~qpqmlVvsDldd~FvPl~~~l 614 (1075)
.+|+||.|.+.-+.+ ++.+++.|+..+..+.- ..+.+||||+|++..+..- ++.+.
T Consensus 3 v~~vlD~S~Sm~~~~-~~~~k~~~~~l~~~~~~~~~~~rvgli~fs~~~~~~~--------------~l~~~-------- 59 (164)
T cd01482 3 IVFLVDGSWSIGRSN-FNLVRSFLSSVVEAFEIGPDGVQVGLVQYSDDPRTEF--------------DLNAY-------- 59 (164)
T ss_pred EEEEEeCCCCcChhh-HHHHHHHHHHHHhheeeCCCceEEEEEEECCCeeEEE--------------ecCCC--------
Confidence 689999999876544 56788888888887642 2358999999998653320 11110
Q ss_pred eeehHHhHHHHHHHHhhcCccccCCCCccchHHHHHHHHHHHH-Hh-cC------CEEEEEecCCCCcCccccccccccc
Q 001452 615 IVPVSECRQHLELLLESIPSMFQNNRTAESAFGAAVKAAFLAL-KS-TG------GKLLVFQSVLPSVGIGALSAREAEG 686 (1075)
Q Consensus 615 Lv~l~esr~~I~~lLd~Lp~~f~~~~~~~~~lG~AL~aA~~lL-~~-~G------GkIivF~sg~Pt~GpG~L~~re~~~ 686 (1075)
.+++.+.+.|+++.. ....+.+|.||..+.+.+ +. .| ..|++|++|.++.
T Consensus 60 -----~~~~~l~~~l~~~~~-----~~g~T~~~~aL~~a~~~~~~~~~~~r~~~~k~iillTDG~~~~------------ 117 (164)
T cd01482 60 -----TSKEDVLAAIKNLPY-----KGGNTRTGKALTHVREKNFTPDAGARPGVPKVVILITDGKSQD------------ 117 (164)
T ss_pred -----CCHHHHHHHHHhCcC-----CCCCChHHHHHHHHHHHhcccccCCCCCCCEEEEEEcCCCCCc------------
Confidence 123344455666542 234578999999877644 32 11 2477777765320
Q ss_pred CCCCCCCccccccccchhHHHHHHHHHHHHhcCcEEEEEEecCCccCccccccccccccc-eEEEEcC
Q 001452 687 RSNISSGEKETHKLLQPADKTLKAMAIEFAEYQVCVDVFITTQTYVDIASISVIPKTTGG-QVYYYYP 753 (1075)
Q Consensus 687 r~~~~~gt~ke~~ll~pa~~FYk~LA~~~~~~gIsVDlFl~s~~~~DlatL~~La~~TGG-~v~~Y~~ 753 (1075)
-.++.+.++.+.||-|-.+.+ ...+...|..|+..+.. +++...+
T Consensus 118 --------------------~~~~~a~~lk~~gi~i~~ig~--g~~~~~~L~~ia~~~~~~~~~~~~d 163 (164)
T cd01482 118 --------------------DVELPARVLRNLGVNVFAVGV--KDADESELKMIASKPSETHVFNVAD 163 (164)
T ss_pred --------------------hHHHHHHHHHHCCCEEEEEec--CcCCHHHHHHHhCCCchheEEEcCC
Confidence 014567777788875555544 44567788888887643 4544433
No 44
>cd00198 vWFA Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains.
Probab=97.73 E-value=0.00064 Score=66.83 Aligned_cols=148 Identities=21% Similarity=0.237 Sum_probs=96.4
Q ss_pred EEEEEEEcchhHHhhhHHHHHHHHHHHHHhcCCC-CCCcEEEEEEeCCeEEEEecCCCCCCceEeecCCccccccCCccc
Q 001452 535 VFFFLIDVSMNALQTGATAAACSAISQVISDLPE-GPRTMVGIATFDSTIHFYNLKRALQQPLMLIVPDVEDVYTPLQSD 613 (1075)
Q Consensus 535 ~yvFvIDvS~~av~sG~l~~v~~aI~~~L~~Lp~-~~rt~VGiITFDs~VhfYnl~~~l~qpqmlVvsDldd~FvPl~~~ 613 (1075)
.++|+||+|.++ ....++.+++.+...++.+.. ....+|+++.|+...+.+- ++.+.
T Consensus 2 ~v~~viD~S~Sm-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~f~~~~~~~~--------------~~~~~------- 59 (161)
T cd00198 2 DIVFLLDVSGSM-GGEKLDKAKEALKALVSSLSASPPGDRVGLVTFGSNARVVL--------------PLTTD------- 59 (161)
T ss_pred cEEEEEeCCCCc-CcchHHHHHHHHHHHHHhcccCCCCcEEEEEEecCccceee--------------ccccc-------
Confidence 478999999987 345678888889999888875 2347999999987332211 01100
Q ss_pred ceeehHHhHHHHHHHHhhcCccccCCCCccchHHHHHHHHHHHHHhc-----CCEEEEEecCCCCcCcccccccccccCC
Q 001452 614 IIVPVSECRQHLELLLESIPSMFQNNRTAESAFGAAVKAAFLALKST-----GGKLLVFQSVLPSVGIGALSAREAEGRS 688 (1075)
Q Consensus 614 lLv~l~esr~~I~~lLd~Lp~~f~~~~~~~~~lG~AL~aA~~lL~~~-----GGkIivF~sg~Pt~GpG~L~~re~~~r~ 688 (1075)
.+.+.+...++.+.. .....+.+..||..+...+... ...|++|+++..+.+.
T Consensus 60 ------~~~~~~~~~~~~~~~----~~~~~t~~~~al~~~~~~~~~~~~~~~~~~lvvitDg~~~~~~------------ 117 (161)
T cd00198 60 ------TDKADLLEAIDALKK----GLGGGTNIGAALRLALELLKSAKRPNARRVIILLTDGEPNDGP------------ 117 (161)
T ss_pred ------CCHHHHHHHHHhccc----CCCCCccHHHHHHHHHHHhcccCCCCCceEEEEEeCCCCCCCc------------
Confidence 123445555666543 2345667889999999999753 4567777776543221
Q ss_pred CCCCCccccccccchhHHHHHHHHHHHHhcCcEEEEEEecCCccCccccccccccc
Q 001452 689 NISSGEKETHKLLQPADKTLKAMAIEFAEYQVCVDVFITTQTYVDIASISVIPKTT 744 (1075)
Q Consensus 689 ~~~~gt~ke~~ll~pa~~FYk~LA~~~~~~gIsVDlFl~s~~~~DlatL~~La~~T 744 (1075)
.-.++....+.+.+|.|+++.+.. ..+...+..|+..|
T Consensus 118 -----------------~~~~~~~~~~~~~~v~v~~v~~g~-~~~~~~l~~l~~~~ 155 (161)
T cd00198 118 -----------------ELLAEAARELRKLGITVYTIGIGD-DANEDELKEIADKT 155 (161)
T ss_pred -----------------chhHHHHHHHHHcCCEEEEEEcCC-CCCHHHHHHHhccc
Confidence 001344555667799998888876 35556677777776
No 45
>cd01477 vWA_F09G8-8_type VWA F09G8.8 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of mo
Probab=97.70 E-value=0.00073 Score=72.01 Aligned_cols=148 Identities=20% Similarity=0.238 Sum_probs=87.3
Q ss_pred EEEEEEEcchhHHhhhHHHHHHHHHHHHHhcCCC-------CCCcEEEEEEeCCeEEEE-ecCCCCCCceEeecCCcccc
Q 001452 535 VFFFLIDVSMNALQTGATAAACSAISQVISDLPE-------GPRTMVGIATFDSTIHFY-NLKRALQQPLMLIVPDVEDV 606 (1075)
Q Consensus 535 ~yvFvIDvS~~av~sG~l~~v~~aI~~~L~~Lp~-------~~rt~VGiITFDs~VhfY-nl~~~l~qpqmlVvsDldd~ 606 (1075)
=.|||||.|.+.-..+ ++.+++.|+..+..+.. ...+|||+|+|++..|+. +|. |..
T Consensus 21 DivfvlD~S~Sm~~~~-f~~~k~fi~~~~~~~~~~~~~~~~~~~~rVGlV~fs~~a~~~~~L~------------d~~-- 85 (193)
T cd01477 21 DIVFVVDNSKGMTQGG-LWQVRATISSLFGSSSQIGTDYDDPRSTRVGLVTYNSNATVVADLN------------DLQ-- 85 (193)
T ss_pred eEEEEEeCCCCcchhh-HHHHHHHHHHHHhhccccccccCCCCCcEEEEEEccCceEEEEecc------------ccc--
Confidence 4799999999865433 56777788777776543 234899999998876432 221 110
Q ss_pred ccCCcccceeehHHhHHHHHHHHhh-cCccccCCCCccchHHHHHHHHHHHHHhc--C-----CE-EEEEecCCCCcCcc
Q 001452 607 YTPLQSDIIVPVSECRQHLELLLES-IPSMFQNNRTAESAFGAAVKAAFLALKST--G-----GK-LLVFQSVLPSVGIG 677 (1075)
Q Consensus 607 FvPl~~~lLv~l~esr~~I~~lLd~-Lp~~f~~~~~~~~~lG~AL~aA~~lL~~~--G-----Gk-IivF~sg~Pt~GpG 677 (1075)
+++.+.+.|+. +..+. ....+.+|.||+.|.+++... + -| ||+++++--+.
T Consensus 86 --------------~~~~~~~ai~~~~~~~~---~~ggT~ig~aL~~A~~~l~~~~~~~R~~v~kvvIllTDg~~~~--- 145 (193)
T cd01477 86 --------------SFDDLYSQIQGSLTDVS---STNASYLDTGLQAAEQMLAAGKRTSRENYKKVVIVFASDYNDE--- 145 (193)
T ss_pred --------------CHHHHHHHHHHHhhccc---cCCcchHHHHHHHHHHHHHhhhccccCCCCeEEEEEecCccCC---
Confidence 11222222332 11111 123678999999999999742 3 46 55555442100
Q ss_pred cccccccccCCCCCCCccccccccchhHHHHHHHHHHHHhcCcEEEEEEecCCccCccccccccccc
Q 001452 678 ALSAREAEGRSNISSGEKETHKLLQPADKTLKAMAIEFAEYQVCVDVFITTQTYVDIASISVIPKTT 744 (1075)
Q Consensus 678 ~L~~re~~~r~~~~~gt~ke~~ll~pa~~FYk~LA~~~~~~gIsVDlFl~s~~~~DlatL~~La~~T 744 (1075)
+.+. ..+.|+++.+.||.|..+.+.. +.|...+..|++..
T Consensus 146 ---------------~~~~-----------~~~~a~~l~~~GI~i~tVGiG~-~~d~~~~~~L~~ia 185 (193)
T cd01477 146 ---------------GSND-----------PRPIAARLKSTGIAIITVAFTQ-DESSNLLDKLGKIA 185 (193)
T ss_pred ---------------CCCC-----------HHHHHHHHHHCCCEEEEEEeCC-CCCHHHHHHHHHhc
Confidence 0000 1467888899999999998875 34433344444443
No 46
>smart00327 VWA von Willebrand factor (vWF) type A domain. VWA domains in extracellular eukaryotic proteins mediate adhesion via metal ion-dependent adhesion sites (MIDAS). Intracellular VWA domains and homologues in prokaryotes have recently been identified. The proposed VWA domains in integrin beta subunits have recently been substantiated using sequence-based methods.
Probab=97.69 E-value=0.0011 Score=67.33 Aligned_cols=153 Identities=22% Similarity=0.187 Sum_probs=103.9
Q ss_pred EEEEEEEcchhHHhhhHHHHHHHHHHHHHhcCCC-CCCcEEEEEEeCCeEEEEecCCCCCCceEeecCCccccccCCccc
Q 001452 535 VFFFLIDVSMNALQTGATAAACSAISQVISDLPE-GPRTMVGIATFDSTIHFYNLKRALQQPLMLIVPDVEDVYTPLQSD 613 (1075)
Q Consensus 535 ~yvFvIDvS~~av~sG~l~~v~~aI~~~L~~Lp~-~~rt~VGiITFDs~VhfYnl~~~l~qpqmlVvsDldd~FvPl~~~ 613 (1075)
.++||||+|.+.- ...++.+.+.+...+..+.. ++..+|||++|++..+.+. +..
T Consensus 3 ~v~l~vD~S~SM~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~ii~f~~~~~~~~---------------------~~~-- 58 (177)
T smart00327 3 DVVFLLDGSGSMG-PNRFEKAKEFVLKLVEQLDIGPDGDRVGLVTFSDDATVLF---------------------PLN-- 58 (177)
T ss_pred cEEEEEeCCCccc-hHHHHHHHHHHHHHHHhcCCCCCCcEEEEEEeCCCceEEE---------------------ccc--
Confidence 4789999999874 24577888888888888765 2358999999998443221 000
Q ss_pred ceeehHHhHHHHHHHHhhcCccccCCCCccchHHHHHHHHHHHHHh---c-----CCEEEEEecCCCCcCcccccccccc
Q 001452 614 IIVPVSECRQHLELLLESIPSMFQNNRTAESAFGAAVKAAFLALKS---T-----GGKLLVFQSVLPSVGIGALSAREAE 685 (1075)
Q Consensus 614 lLv~l~esr~~I~~lLd~Lp~~f~~~~~~~~~lG~AL~aA~~lL~~---~-----GGkIivF~sg~Pt~GpG~L~~re~~ 685 (1075)
....++.|...++.+... ....+-++.||+.+...++. . .-.|++|+++.++.+
T Consensus 59 ----~~~~~~~~~~~i~~~~~~----~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~iviitDg~~~~~---------- 120 (177)
T smart00327 59 ----DSRSKDALLEALASLSYK----LGGGTNLGAALQYALENLFSKSAGSRRGAPKVLILITDGESNDG---------- 120 (177)
T ss_pred ----ccCCHHHHHHHHHhcCCC----CCCCchHHHHHHHHHHHhcCcCCCCCCCCCeEEEEEcCCCCCCC----------
Confidence 112344566666666531 34556799999999998852 1 125777776654422
Q ss_pred cCCCCCCCccccccccchhHHHHHHHHHHHHhcCcEEEEEEecCCccCccccccccccccceEEE
Q 001452 686 GRSNISSGEKETHKLLQPADKTLKAMAIEFAEYQVCVDVFITTQTYVDIASISVIPKTTGGQVYY 750 (1075)
Q Consensus 686 ~r~~~~~gt~ke~~ll~pa~~FYk~LA~~~~~~gIsVDlFl~s~~~~DlatL~~La~~TGG~v~~ 750 (1075)
..+++...++.+.+|.+..+.+.... +...+..+++.++|...+
T Consensus 121 --------------------~~~~~~~~~~~~~~i~i~~i~~~~~~-~~~~l~~~~~~~~~~~~~ 164 (177)
T smart00327 121 --------------------GDLLKAAKELKRSGVKVFVVGVGNDV-DEEELKKLASAPGGVYVF 164 (177)
T ss_pred --------------------ccHHHHHHHHHHCCCEEEEEEccCcc-CHHHHHHHhCCCcceEEe
Confidence 12456677788888888888887653 777889999999887655
No 47
>PHA03247 large tegument protein UL36; Provisional
Probab=97.62 E-value=0.48 Score=65.23 Aligned_cols=13 Identities=23% Similarity=0.447 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHh
Q 001452 552 TAAACSAISQVIS 564 (1075)
Q Consensus 552 l~~v~~aI~~~L~ 564 (1075)
|-..|+.|...|.
T Consensus 3114 Li~ACr~i~r~lr 3126 (3151)
T PHA03247 3114 LIEACRRIRRQLR 3126 (3151)
T ss_pred HHHHHHHHHHHHH
Confidence 3344555544443
No 48
>cd01473 vWA_CTRP CTRP for CS protein-TRAP-related protein: Adhesion of Plasmodium to host cells is an important phenomenon in parasite invasion and in malaria associated pathology.CTRP encodes a protein containing a putative signal sequence followed by a long extracellular region of 1990 amino acids, a transmembrane domain, and a short cytoplasmic segment. The extracellular region of CTRP contains two separated adhesive domains. The first domain contains six 210-amino acid-long homologous VWA domain repeats. The second domain contains seven repeats of 87-60 amino acids in length, which share similarities with the thrombospondin type 1 domain found in a variety of adhesive molecules. Finally, CTRP also contains consensus motifs found in the superfamily of haematopoietin receptors. The VWA domains in these proteins likely mediate protein-protein interactions.
Probab=97.57 E-value=0.0029 Score=67.26 Aligned_cols=150 Identities=13% Similarity=0.151 Sum_probs=93.3
Q ss_pred EEEEEEcchhHHhhhHHHHHHHHHHHHHhcCCC-CCCcEEEEEEeCCeEEEE-ecCCCCCCceEeecCCccccccCCccc
Q 001452 536 FFFLIDVSMNALQTGATAAACSAISQVISDLPE-GPRTMVGIATFDSTIHFY-NLKRALQQPLMLIVPDVEDVYTPLQSD 613 (1075)
Q Consensus 536 yvFvIDvS~~av~sG~l~~v~~aI~~~L~~Lp~-~~rt~VGiITFDs~VhfY-nl~~~l~qpqmlVvsDldd~FvPl~~~ 613 (1075)
++|+||.|.+.-+..+-..+++.++..++.+.- ..++|||+|+|++..+.+ .+...
T Consensus 3 i~fllD~S~Si~~~~f~~~~~~f~~~lv~~l~i~~~~~rvgvv~fs~~~~~~~~~~~~---------------------- 60 (192)
T cd01473 3 LTLILDESASIGYSNWRKDVIPFTEKIINNLNISKDKVHVGILLFAEKNRDVVPFSDE---------------------- 60 (192)
T ss_pred EEEEEeCCCcccHHHHHHHHHHHHHHHHHhCccCCCccEEEEEEecCCceeEEecCcc----------------------
Confidence 589999999876655544577788888887764 246899999998766432 11110
Q ss_pred ceeehHHhHHHHHHHHhhcCccccCCCCccchHHHHHHHHHHHHHhcCC------E-EEEEecCCCCcCccccccccccc
Q 001452 614 IIVPVSECRQHLELLLESIPSMFQNNRTAESAFGAAVKAAFLALKSTGG------K-LLVFQSVLPSVGIGALSAREAEG 686 (1075)
Q Consensus 614 lLv~l~esr~~I~~lLd~Lp~~f~~~~~~~~~lG~AL~aA~~lL~~~GG------k-IivF~sg~Pt~GpG~L~~re~~~ 686 (1075)
....++.+.+.|+.|...+. ....+.+|.||+.|.+.+...+| | +|++++|..+-+
T Consensus 61 ----~~~~~~~l~~~i~~l~~~~~--~~g~T~~~~AL~~a~~~~~~~~~~r~~~~kv~IllTDG~s~~~----------- 123 (192)
T cd01473 61 ----ERYDKNELLKKINDLKNSYR--SGGETYIVEALKYGLKNYTKHGNRRKDAPKVTMLFTDGNDTSA----------- 123 (192)
T ss_pred ----cccCHHHHHHHHHHHHhccC--CCCcCcHHHHHHHHHHHhccCCCCcccCCeEEEEEecCCCCCc-----------
Confidence 01123344455666543222 23467899999999888754332 2 666666642110
Q ss_pred CCCCCCCccccccccchhHHHHHHHHHHHHhcCcEEEEEEecCCccCcccccccccc
Q 001452 687 RSNISSGEKETHKLLQPADKTLKAMAIEFAEYQVCVDVFITTQTYVDIASISVIPKT 743 (1075)
Q Consensus 687 r~~~~~gt~ke~~ll~pa~~FYk~LA~~~~~~gIsVDlFl~s~~~~DlatL~~La~~ 743 (1075)
.+ .--.+.++++.+.||.|-.+.+.. .+..+|..|+..
T Consensus 124 ---------~~--------~~~~~~a~~lk~~gV~i~~vGiG~--~~~~el~~ia~~ 161 (192)
T cd01473 124 ---------SK--------KELQDISLLYKEENVKLLVVGVGA--ASENKLKLLAGC 161 (192)
T ss_pred ---------ch--------hhHHHHHHHHHHCCCEEEEEEecc--ccHHHHHHhcCC
Confidence 00 012456778888999888887765 356677777754
No 49
>COG1240 ChlD Mg-chelatase subunit ChlD [Coenzyme metabolism]
Probab=97.55 E-value=0.00081 Score=73.63 Aligned_cols=164 Identities=20% Similarity=0.249 Sum_probs=117.1
Q ss_pred CcEEEEEEEcchhHHhhhHHHHHHHHHHHHHhcCCCCCCcEEEEEEeCCeEEEEecCCCCCCceEeecCCccccccCCcc
Q 001452 533 PAVFFFLIDVSMNALQTGATAAACSAISQVISDLPEGPRTMVGIATFDSTIHFYNLKRALQQPLMLIVPDVEDVYTPLQS 612 (1075)
Q Consensus 533 pp~yvFvIDvS~~av~sG~l~~v~~aI~~~L~~Lp~~~rt~VGiITFDs~VhfYnl~~~l~qpqmlVvsDldd~FvPl~~ 612 (1075)
..-+|||||.|.++.....+++++-++...|.+--. .|-||++|+|..+ + .
T Consensus 78 g~lvvfvVDASgSM~~~~Rm~aaKG~~~~lL~dAYq-~RdkvavI~F~G~-----------~-----------------A 128 (261)
T COG1240 78 GNLIVFVVDASGSMAARRRMAAAKGAALSLLRDAYQ-RRDKVAVIAFRGE-----------K-----------------A 128 (261)
T ss_pred CCcEEEEEeCcccchhHHHHHHHHHHHHHHHHHHHH-ccceEEEEEecCC-----------c-----------------c
Confidence 457999999999987666678888888888765322 3569999998421 1 1
Q ss_pred cceeehHHhHHHHHHHHhhcCccccCCCCccchHHHHHHHHHHHHHhcC-------CEEEEEecCCCCcCcccccccccc
Q 001452 613 DIIVPVSECRQHLELLLESIPSMFQNNRTAESAFGAAVKAAFLALKSTG-------GKLLVFQSVLPSVGIGALSAREAE 685 (1075)
Q Consensus 613 ~lLv~l~esr~~I~~lLd~Lp~~f~~~~~~~~~lG~AL~aA~~lL~~~G-------GkIivF~sg~Pt~GpG~L~~re~~ 685 (1075)
.|+++...+-+.+++.|+.|+. ...+=+..||+.|.+++.... -.++|.++|.+|.+.+.=
T Consensus 129 ~lll~pT~sv~~~~~~L~~l~~------GG~TPL~~aL~~a~ev~~r~~r~~p~~~~~~vviTDGr~n~~~~~~------ 196 (261)
T COG1240 129 ELLLPPTSSVELAERALERLPT------GGKTPLADALRQAYEVLAREKRRGPDRRPVMVVITDGRANVPIPLG------ 196 (261)
T ss_pred eEEeCCcccHHHHHHHHHhCCC------CCCCchHHHHHHHHHHHHHhhccCCCcceEEEEEeCCccCCCCCCc------
Confidence 2344555666778888898874 455669999999999997532 478899999988765311
Q ss_pred cCCCCCCCccccccccchhHHHHHHHHHHHHhcCcEEEEEEecCCccCccccccccccccceEEEEcCCC
Q 001452 686 GRSNISSGEKETHKLLQPADKTLKAMAIEFAEYQVCVDVFITTQTYVDIASISVIPKTTGGQVYYYYPFS 755 (1075)
Q Consensus 686 ~r~~~~~gt~ke~~ll~pa~~FYk~LA~~~~~~gIsVDlFl~s~~~~DlatL~~La~~TGG~v~~Y~~F~ 755 (1075)
-+.| -.+.+.++...++-+=++=+...++.+.-...||...||++|+.+..+
T Consensus 197 --------~~~e----------~~~~a~~~~~~g~~~lvid~e~~~~~~g~~~~iA~~~Gg~~~~L~~l~ 248 (261)
T COG1240 197 --------PKAE----------TLEAASKLRLRGIQLLVIDTEGSEVRLGLAEEIARASGGEYYHLDDLS 248 (261)
T ss_pred --------hHHH----------HHHHHHHHhhcCCcEEEEecCCccccccHHHHHHHHhCCeEEeccccc
Confidence 0011 124556666677766666677778878778999999999999998754
No 50
>PHA03247 large tegument protein UL36; Provisional
Probab=97.55 E-value=0.17 Score=69.17 Aligned_cols=18 Identities=22% Similarity=0.169 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHhcCCC
Q 001452 551 ATAAACSAISQVISDLPE 568 (1075)
Q Consensus 551 ~l~~v~~aI~~~L~~Lp~ 568 (1075)
.|..++++.+.+.++|..
T Consensus 3110 alAlLi~ACr~i~r~lr~ 3127 (3151)
T PHA03247 3110 ALAVLIEACRRIRRQLRR 3127 (3151)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 466777777777766653
No 51
>PF00626 Gelsolin: Gelsolin repeat; InterPro: IPR007123 Gelsolin is a cytoplasmic, calcium-regulated, actin-modulating protein that binds to the barbed ends of actin filaments, preventing monomer exchange (end-blocking or capping) []. It can promote nucleation (the assembly of monomers into filaments), as well as sever existing filaments. In addition, this protein binds with high affinity to fibronectin. Plasma gelsolin and cytoplasmic gelsolin are derived from a single gene by alternate initiation sites and differential splicing. Sequence comparisons indicate an evolutionary relationship between gelsolin, villin, fragmin and severin []. Six large repeating segments occur in gelsolin and villin, and 3 similar segments in severin and fragmin. While the multiple repeats have yet to be related to any known function of the actin-severing proteins, the superfamily appears to have evolved from an ancestral sequence of 120 to 130 amino acid residues [].; PDB: 3FG6_F 1RGI_G 2FGH_A 1D0N_B 3EGD_B 2NUP_B 2NUT_B 3EGX_B 1JHW_A 1J72_A ....
Probab=97.43 E-value=6.4e-05 Score=67.10 Aligned_cols=49 Identities=24% Similarity=0.505 Sum_probs=40.2
Q ss_pred CCCcccCccccccCCcEEEEEcCCeEEEEeCCCCCHHHHHHhhCCCCCCCC
Q 001452 992 IPPFLPLSSEHVSDEGIYLLENGEDALIYIGSSVDSSILHQLFGISSVDEV 1042 (1075)
Q Consensus 992 lP~~l~LS~e~L~~~GiYLLD~G~~i~LwvG~~v~p~ll~~lFGv~s~~~l 1042 (1075)
.+..++++.+.|.++++||||+|..||+|+|+. ....++.+++....++
T Consensus 4 ~~~~~~~s~~~L~s~~~yIld~~~~i~vW~G~~--~~~~e~~~a~~~a~~~ 52 (76)
T PF00626_consen 4 RPEQVPLSQSSLNSDDCYILDCGYEIFVWVGKK--SSPEEKAFAAQLAQEL 52 (76)
T ss_dssp EEEEESSSGGGEETTSEEEEEESSEEEEEEHTT--SHHHHHHHHHHHHHHH
T ss_pred cCCcCCCCHHHcCCCCEEEEEeCCCcEEEEecc--CCHHHHHHHHHHHHHh
Confidence 466789999999999999999999999999999 5666677776544433
No 52
>cd01481 vWA_collagen_alpha3-VI-like VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=97.42 E-value=0.0027 Score=65.83 Aligned_cols=152 Identities=16% Similarity=0.170 Sum_probs=92.1
Q ss_pred EEEEEEcchhHHhhhHHHHHHHHHHHHHhcCCC-CCCcEEEEEEeCCeEEEEecCCCCCCceEeecCCccccccCCcccc
Q 001452 536 FFFLIDVSMNALQTGATAAACSAISQVISDLPE-GPRTMVGIATFDSTIHFYNLKRALQQPLMLIVPDVEDVYTPLQSDI 614 (1075)
Q Consensus 536 yvFvIDvS~~av~sG~l~~v~~aI~~~L~~Lp~-~~rt~VGiITFDs~VhfYnl~~~l~qpqmlVvsDldd~FvPl~~~l 614 (1075)
.+|+||.|.+--+. -++.+++-|++.++.+.- ...+|||+|+|++..+.. + ++++.
T Consensus 3 ivfllD~S~Si~~~-~f~~~k~fi~~lv~~f~i~~~~~rVgvv~ys~~~~~~-----------~---~l~~~-------- 59 (165)
T cd01481 3 IVFLIDGSDNVGSG-NFPAIRDFIERIVQSLDVGPDKIRVAVVQFSDTPRPE-----------F---YLNTH-------- 59 (165)
T ss_pred EEEEEeCCCCcCHH-HHHHHHHHHHHHHhhccCCCCCcEEEEEEecCCeeEE-----------E---ecccc--------
Confidence 58999999875433 357788888888888763 245899999998755321 0 11111
Q ss_pred eeehHHhHHHHHHHHhhcCccccCCCCccchHHHHHHHHHHHH-Hh-cCC-------E-EEEEecCCCCcCccccccccc
Q 001452 615 IVPVSECRQHLELLLESIPSMFQNNRTAESAFGAAVKAAFLAL-KS-TGG-------K-LLVFQSVLPSVGIGALSAREA 684 (1075)
Q Consensus 615 Lv~l~esr~~I~~lLd~Lp~~f~~~~~~~~~lG~AL~aA~~lL-~~-~GG-------k-IivF~sg~Pt~GpG~L~~re~ 684 (1075)
.+++.|.+.|++|+.+ ....+.+|.||+.+.+.+ .. .|+ | ++++++|..+
T Consensus 60 -----~~~~~l~~~i~~i~~~----~g~~t~t~~AL~~~~~~~f~~~~g~R~~~~~~kv~vviTdG~s~----------- 119 (165)
T cd01481 60 -----STKADVLGAVRRLRLR----GGSQLNTGSALDYVVKNLFTKSAGSRIEEGVPQFLVLITGGKSQ----------- 119 (165)
T ss_pred -----CCHHHHHHHHHhcccC----CCCcccHHHHHHHHHHhhcCccccCCccCCCCeEEEEEeCCCCc-----------
Confidence 1233345556666432 122356899999887644 32 232 3 4566655311
Q ss_pred ccCCCCCCCccccccccchhHHHHHHHHHHHHhcCcEEEEEEecCCccCccccccccccccceEEEEcCC
Q 001452 685 EGRSNISSGEKETHKLLQPADKTLKAMAIEFAEYQVCVDVFITTQTYVDIASISVIPKTTGGQVYYYYPF 754 (1075)
Q Consensus 685 ~~r~~~~~gt~ke~~ll~pa~~FYk~LA~~~~~~gIsVDlFl~s~~~~DlatL~~La~~TGG~v~~Y~~F 754 (1075)
+ + +++-|+++.+.|| .+|.++-...|..+|..++..- -.+|...+|
T Consensus 120 ----------d----------~-~~~~a~~lr~~gv--~i~~vG~~~~~~~eL~~ias~p-~~vf~v~~f 165 (165)
T cd01481 120 ----------D----------D-VERPAVALKRAGI--VPFAIGARNADLAELQQIAFDP-SFVFQVSDF 165 (165)
T ss_pred ----------c----------h-HHHHHHHHHHCCc--EEEEEeCCcCCHHHHHHHhCCC-ccEEEecCC
Confidence 0 1 2456777888885 4677666667888888877655 355554443
No 53
>cd01458 vWA_ku Ku70/Ku80 N-terminal domain. The Ku78 heterodimer (composed of Ku70 and Ku80) contributes to genomic integrity through its ability to bind DNA double-strand breaks (DSB) in a preferred orientation. DSB's are repaired by either homologues recombination or non-homologues end joining and facilitate repair by the non-homologous end-joining pathway (NHEJ). The Ku heterodimer is required for accurate process that tends to preserve the sequence at the junction. Ku78 is found in all three kingdoms of life. However, only the eukaryotic proteins have a vWA domain fused to them at their N-termini. The vWA domain is not involved in DNA binding but may very likey mediate Ku78's interactions with other proteins. Members of this subgroup lack the conserved MIDAS motif.
Probab=97.38 E-value=0.0055 Score=66.16 Aligned_cols=154 Identities=16% Similarity=0.247 Sum_probs=91.0
Q ss_pred EEEEEEEcchhHHhh------hHHHHHHHHHHHHHhcC-CCCCCcEEEEEEeCCeEEEEecCCCCCCceEeecCCccccc
Q 001452 535 VFFFLIDVSMNALQT------GATAAACSAISQVISDL-PEGPRTMVGIATFDSTIHFYNLKRALQQPLMLIVPDVEDVY 607 (1075)
Q Consensus 535 ~yvFvIDvS~~av~s------G~l~~v~~aI~~~L~~L-p~~~rt~VGiITFDs~VhfYnl~~~l~qpqmlVvsDldd~F 607 (1075)
..+|+||||.++.+. ..|+.+++.|...+.+. -..+..+||+|.|++.-+-- ...-.++.++.++..+
T Consensus 3 ~ivf~iDvS~SM~~~~~~~~~s~l~~a~~~i~~~~~~ki~~~~~D~vGlilf~t~~~~~----~~~~~~i~v~~~l~~~- 77 (218)
T cd01458 3 SVVFLVDVSPSMFESKDGEYESPFEEALKCIRQLMKSKIISSPKDLVGVVFYGTEESKN----PVGYENIYVLLDLDTP- 77 (218)
T ss_pred EEEEEEeCCHHHcCCCCCCCCChHHHHHHHHHHHHHhceeCCCCCeEEEEEEcccCCCC----cCCCCceEEeecCCCC-
Confidence 579999999987522 35778888888888852 11223599999997643210 0011233444443221
Q ss_pred cCCcccceeehHHhHHHHHHHHhhcCcc-c----cCCCCccchHHHHHHHHHHHHHh-----cCCEEEEEecCCCCcCcc
Q 001452 608 TPLQSDIIVPVSECRQHLELLLESIPSM-F----QNNRTAESAFGAAVKAAFLALKS-----TGGKLLVFQSVLPSVGIG 677 (1075)
Q Consensus 608 vPl~~~lLv~l~esr~~I~~lLd~Lp~~-f----~~~~~~~~~lG~AL~aA~~lL~~-----~GGkIivF~sg~Pt~GpG 677 (1075)
..+.|+.+++.+..- . ......+..++.||..|..+++. ..-+|++||++--..| |
T Consensus 78 -------------~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~aL~~a~~~~~~~~~~~~~k~IvL~TDg~~p~~-~ 143 (218)
T cd01458 78 -------------GAERVEDLKELIEPGGLSFAGQVGDSGQVSLSDALWVCLDLFSKGKKKKSHKRIFLFTNNDDPHG-G 143 (218)
T ss_pred -------------CHHHHHHHHHHhhcchhhhcccCCCCCCccHHHHHHHHHHHHHhccccccccEEEEECCCCCCCC-C
Confidence 123334444433211 0 01123567899999999999985 2347888887642221 0
Q ss_pred cccccccccCCCCCCCccccccccchhHHHHHHHHHHHHhcCcEEEEEEecCC
Q 001452 678 ALSAREAEGRSNISSGEKETHKLLQPADKTLKAMAIEFAEYQVCVDVFITTQT 730 (1075)
Q Consensus 678 ~L~~re~~~r~~~~~gt~ke~~ll~pa~~FYk~LA~~~~~~gIsVDlFl~s~~ 730 (1075)
+ .. ...-+.+++.++.+.||.|.+|.+...
T Consensus 144 ------~----------~~-------~~~~~~~~a~~l~~~gI~i~~i~i~~~ 173 (218)
T cd01458 144 ------D----------SI-------KDSQAAVKAEDLKDKGIELELFPLSSP 173 (218)
T ss_pred ------C----------HH-------HHHHHHHHHHHHHhCCcEEEEEecCCC
Confidence 0 00 123356788999999999999987544
No 54
>cd01476 VWA_integrin_invertebrates VWA_integrin (invertebrates): Integrins are a family of cell surface receptors that have diverse functions in cell-cell and cell-extracellular matrix interactions. Because of their involvement in many biologically important adhesion processes, integrins are conserved across a wide range of multicellular animals. Integrins from invertebrates have been identified from six phyla. There are no data to date to suggest any immunological functions for the invertebrate integrins. The members of this sub-group have the conserved MIDAS motif that is charateristic of this domain suggesting the involvement of the integrins in the recognition and binding of multi-ligands.
Probab=97.35 E-value=0.0054 Score=62.47 Aligned_cols=103 Identities=17% Similarity=0.198 Sum_probs=66.3
Q ss_pred EEEEEEcchhHHhhhHHHHHHHHHHHHHhcCCC-CCCcEEEEEEeCC--eEEEEecCCCCCCceEeecCCccccccCCcc
Q 001452 536 FFFLIDVSMNALQTGATAAACSAISQVISDLPE-GPRTMVGIATFDS--TIHFYNLKRALQQPLMLIVPDVEDVYTPLQS 612 (1075)
Q Consensus 536 yvFvIDvS~~av~sG~l~~v~~aI~~~L~~Lp~-~~rt~VGiITFDs--~VhfYnl~~~l~qpqmlVvsDldd~FvPl~~ 612 (1075)
++|+||+|.+.-. -++..++.+++.++.|.. ..+.+||+|+|++ ..++.- ++.+
T Consensus 3 v~~llD~S~Sm~~--~~~~~~~~~~~~~~~l~~~~~~~~v~lv~f~~~~~~~~~~--------------~l~~------- 59 (163)
T cd01476 3 LLFVLDSSGSVRG--KFEKYKKYIERIVEGLEIGPTATRVALITYSGRGRQRVRF--------------NLPK------- 59 (163)
T ss_pred EEEEEeCCcchhh--hHHHHHHHHHHHHHhcCCCCCCcEEEEEEEcCCCceEEEe--------------cCCC-------
Confidence 6899999997743 356778888888888764 2357999999987 333211 0110
Q ss_pred cceeehHHhHHHHHHHHhhcCccccCCCCccchHHHHHHHHHHHHHhc-----C--CEEEEEecCCC
Q 001452 613 DIIVPVSECRQHLELLLESIPSMFQNNRTAESAFGAAVKAAFLALKST-----G--GKLLVFQSVLP 672 (1075)
Q Consensus 613 ~lLv~l~esr~~I~~lLd~Lp~~f~~~~~~~~~lG~AL~aA~~lL~~~-----G--GkIivF~sg~P 672 (1075)
..+++.+...|+.|.. ....+.+|.||..|.+.|... + ..|+++++|..
T Consensus 60 ------~~~~~~l~~~i~~l~~-----~gg~T~l~~aL~~a~~~l~~~~~~r~~~~~~villTDG~~ 115 (163)
T cd01476 60 ------HNDGEELLEKVDNLRF-----IGGTTATGAAIEVALQQLDPSEGRREGIPKVVVVLTDGRS 115 (163)
T ss_pred ------CCCHHHHHHHHHhCcc-----CCCCccHHHHHHHHHHHhccccCCCCCCCeEEEEECCCCC
Confidence 0123445556666642 134578999999999999521 1 34777777654
No 55
>cd01464 vWA_subfamily VWA subfamily: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=97.22 E-value=0.0017 Score=67.57 Aligned_cols=138 Identities=14% Similarity=0.197 Sum_probs=84.4
Q ss_pred EEEEEEcchhHHhhhHHHHHHHHHHHHHhcCCCC----CCcEEEEEEeCCeEEEEecCCCCCCceEeecCCccccccCCc
Q 001452 536 FFFLIDVSMNALQTGATAAACSAISQVISDLPEG----PRTMVGIATFDSTIHFYNLKRALQQPLMLIVPDVEDVYTPLQ 611 (1075)
Q Consensus 536 yvFvIDvS~~av~sG~l~~v~~aI~~~L~~Lp~~----~rt~VGiITFDs~VhfYnl~~~l~qpqmlVvsDldd~FvPl~ 611 (1075)
++||||+|.+.... -++.++++++..++.|..+ ++.+|+||+|++..+..- . +.++++.
T Consensus 6 v~~llD~SgSM~~~-~~~~~k~a~~~~~~~l~~~~~~~~~~~v~ii~F~~~a~~~~---~--------l~~~~~~----- 68 (176)
T cd01464 6 IYLLLDTSGSMAGE-PIEALNQGLQMLQSELRQDPYALESVEISVITFDSAARVIV---P--------LTPLESF----- 68 (176)
T ss_pred EEEEEECCCCCCCh-HHHHHHHHHHHHHHHHhcChhhccccEEEEEEecCCceEec---C--------CccHHhc-----
Confidence 68999999987443 3567778888888777543 467999999998765421 0 0011100
Q ss_pred ccceeehHHhHHHHHHHHhhcCccccCCCCccchHHHHHHHHHHHHHhc-----C-------CEEEEEecCCCCcCcccc
Q 001452 612 SDIIVPVSECRQHLELLLESIPSMFQNNRTAESAFGAAVKAAFLALKST-----G-------GKLLVFQSVLPSVGIGAL 679 (1075)
Q Consensus 612 ~~lLv~l~esr~~I~~lLd~Lp~~f~~~~~~~~~lG~AL~aA~~lL~~~-----G-------GkIivF~sg~Pt~GpG~L 679 (1075)
.++.| .....++++.||+.|.+.|+.. + ..|+++++|.++.+..
T Consensus 69 ----------------~~~~l------~~~GgT~l~~aL~~a~~~l~~~~~~~~~~~~~~~~~~iillTDG~~~~~~~-- 124 (176)
T cd01464 69 ----------------QPPRL------TASGGTSMGAALELALDCIDRRVQRYRADQKGDWRPWVFLLTDGEPTDDLT-- 124 (176)
T ss_pred ----------------CCCcc------cCCCCCcHHHHHHHHHHHHHHHHHHhcccCcCCcCcEEEEEcCCCCCchHH--
Confidence 00111 1235689999999999998641 0 1588888887642110
Q ss_pred cccccccCCCCCCCccccccccchhHHHHHHHHHHHHhcCcEEEEEEecCCccCccccccccc
Q 001452 680 SAREAEGRSNISSGEKETHKLLQPADKTLKAMAIEFAEYQVCVDVFITTQTYVDIASISVIPK 742 (1075)
Q Consensus 680 ~~re~~~r~~~~~gt~ke~~ll~pa~~FYk~LA~~~~~~gIsVDlFl~s~~~~DlatL~~La~ 742 (1075)
... +...++.+.++.|..|.++. ++|...|..|+.
T Consensus 125 -----------------------~~~----~~~~~~~~~~~~i~~igiG~-~~~~~~L~~ia~ 159 (176)
T cd01464 125 -----------------------AAI----ERIKEARDSKGRIVACAVGP-KADLDTLKQITE 159 (176)
T ss_pred -----------------------HHH----HHHHhhcccCCcEEEEEecc-ccCHHHHHHHHC
Confidence 001 22223344577777777776 577777777664
No 56
>cd01454 vWA_norD_type norD type: Denitrifying bacteria contain both membrane bound and periplasmic nitrate reductases. Denitrification plays a major role in completing the nitrogen cycle by converting nitrate or nitrite to nitrogen gas. The pathway for microbial denitrification has been established as NO3- ------ NO2- ------ NO ------- N2O --------- N2. This reaction generally occurs under oxygen limiting conditions. Genetic and biochemical studies have shown that the first srep of the biochemical pathway is catalyzed by periplasmic nitrate reductases. This family is widely present in proteobacteria and firmicutes. This version of the domain is also present in some archaeal members. The function of the vWA domain in this sub-group is not known. Members of this subgroup have a conserved MIDAS motif.
Probab=97.06 E-value=0.0079 Score=62.35 Aligned_cols=150 Identities=15% Similarity=0.102 Sum_probs=86.6
Q ss_pred EEEEEEEcchhHHhhhHHHHHHHHHHHHHhcCCCCCCcEEEEEEeCCeEEEEecCCCCCCceEeecCCccccccCCcccc
Q 001452 535 VFFFLIDVSMNALQTGATAAACSAISQVISDLPEGPRTMVGIATFDSTIHFYNLKRALQQPLMLIVPDVEDVYTPLQSDI 614 (1075)
Q Consensus 535 ~yvFvIDvS~~av~sG~l~~v~~aI~~~L~~Lp~~~rt~VGiITFDs~VhfYnl~~~l~qpqmlVvsDldd~FvPl~~~l 614 (1075)
.++|+||+|.+......++.+++++...++.|.. .+.+++|++|++.. ........+...+.++. +
T Consensus 2 ~v~~llD~SgSM~~~~kl~~ak~a~~~l~~~l~~-~~d~~~l~~F~~~~------~~~~~~~~~~~~~~~~~-------~ 67 (174)
T cd01454 2 AVTLLLDLSGSMRSDRRIDVAKKAAVLLAEALEA-CGVPHAILGFTTDA------GGRERVRWIKIKDFDES-------L 67 (174)
T ss_pred EEEEEEECCCCCCCCcHHHHHHHHHHHHHHHHHH-cCCcEEEEEecCCC------CCccceEEEEecCcccc-------c
Confidence 5789999999875433577777777776666654 23689999998753 00000011111122111 0
Q ss_pred eeehHHhHHHHHHHHhhcCccccCCCCccchHHHHHHHHHHHHHh---cCCEEEEEecCCCCcCcccccccccccCCCCC
Q 001452 615 IVPVSECRQHLELLLESIPSMFQNNRTAESAFGAAVKAAFLALKS---TGGKLLVFQSVLPSVGIGALSAREAEGRSNIS 691 (1075)
Q Consensus 615 Lv~l~esr~~I~~lLd~Lp~~f~~~~~~~~~lG~AL~aA~~lL~~---~GGkIivF~sg~Pt~GpG~L~~re~~~r~~~~ 691 (1075)
...+...|+.+.. ...+.+|.||..|...++. ....||++++|.++.+...-
T Consensus 68 -------~~~~~~~l~~~~~------~g~T~~~~al~~a~~~l~~~~~~~~~iiliTDG~~~~~~~~~------------ 122 (174)
T cd01454 68 -------HERARKRLAALSP------GGNTRDGAAIRHAAERLLARPEKRKILLVISDGEPNDLDYYE------------ 122 (174)
T ss_pred -------chhHHHHHHccCC------CCCCcHHHHHHHHHHHHhcCCCcCcEEEEEeCCCcCcccccC------------
Confidence 0122333444431 3357899999999999874 34568888999887542100
Q ss_pred CCccccccccchhHHHHHHHHHHHHhcCcEEEEEEecCCc
Q 001452 692 SGEKETHKLLQPADKTLKAMAIEFAEYQVCVDVFITTQTY 731 (1075)
Q Consensus 692 ~gt~ke~~ll~pa~~FYk~LA~~~~~~gIsVDlFl~s~~~ 731 (1075)
+ + +... .+- .+.++++.+.||.|..+.+..+-
T Consensus 123 -~--~---~~~~-~~~-~~~~~~~~~~gi~v~~igig~~~ 154 (174)
T cd01454 123 -G--N---VFAT-EDA-LRAVIEARKLGIEVFGITIDRDA 154 (174)
T ss_pred -c--c---hhHH-HHH-HHHHHHHHhCCcEEEEEEecCcc
Confidence 0 0 0000 000 22377888899998888776553
No 57
>PF04056 Ssl1: Ssl1-like; InterPro: IPR007198 Ssl1-like proteins are 40 kDa subunits of the transcription factor II H complex. This domain is often found associated with the C2H2 type Zn-finger (IPR007087 from INTERPRO).; GO: 0008270 zinc ion binding, 0006281 DNA repair, 0006355 regulation of transcription, DNA-dependent
Probab=97.05 E-value=0.0052 Score=65.48 Aligned_cols=164 Identities=16% Similarity=0.199 Sum_probs=101.8
Q ss_pred EEEcchhHHhhh----HHHHHHHHHHHHHhcC-CCCCCcEEEEEEeCCeEEEEecCCCCCCceEeecCCccccccCCccc
Q 001452 539 LIDVSMNALQTG----ATAAACSAISQVISDL-PEGPRTMVGIATFDSTIHFYNLKRALQQPLMLIVPDVEDVYTPLQSD 613 (1075)
Q Consensus 539 vIDvS~~av~sG----~l~~v~~aI~~~L~~L-p~~~rt~VGiITFDs~VhfYnl~~~l~qpqmlVvsDldd~FvPl~~~ 613 (1075)
+||.|..+.+.- .+.++++.+..-+++. ..|+-.+||||+.-+.+ .-+++++.-
T Consensus 1 viD~S~~m~~~D~~PtRl~~~~~~l~~Fv~eff~qNPiSqlgii~~~~~~-------------a~~ls~lsg-------- 59 (193)
T PF04056_consen 1 VIDMSEAMREKDLKPTRLQCVLKALEEFVREFFDQNPISQLGIIVMRDGR-------------AERLSELSG-------- 59 (193)
T ss_pred CeechHhHHhCcCCccHHHHHHHHHHHHHHHHHhcCChhheeeeeeecce-------------eEEeeecCC--------
Confidence 589998876533 4667777777776654 34677899999873322 012222211
Q ss_pred ceeehHHhHHHHHHHHhhcCccccCCCCccchHHHHHHHHHHHHHhc---CC-EEEEEecCCCCcCcccccccccccCCC
Q 001452 614 IIVPVSECRQHLELLLESIPSMFQNNRTAESAFGAAVKAAFLALKST---GG-KLLVFQSVLPSVGIGALSAREAEGRSN 689 (1075)
Q Consensus 614 lLv~l~esr~~I~~lLd~Lp~~f~~~~~~~~~lG~AL~aA~~lL~~~---GG-kIivF~sg~Pt~GpG~L~~re~~~r~~ 689 (1075)
+..+ ..+.|+++.+ ..-..+..+-.||+.|...|++. +. .|+++.+++-|.-||
T Consensus 60 ---n~~~----h~~~L~~~~~---~~~~G~~SLqN~Le~A~~~L~~~p~~~srEIlvi~gSl~t~Dp~------------ 117 (193)
T PF04056_consen 60 ---NPQE----HIEALKKLRK---LEPSGEPSLQNGLEMARSSLKHMPSHGSREILVIFGSLTTCDPG------------ 117 (193)
T ss_pred ---CHHH----HHHHHHHhcc---CCCCCChhHHHHHHHHHHHHhhCccccceEEEEEEeecccCCch------------
Confidence 1111 2223333322 23456778999999999999863 44 455555555433332
Q ss_pred CCCCccccccccchhHHHHHHHHHHHHhcCcEEEEEEecCCccCccccccccccccceEEEEcCCCcccchHHHHHHHHH
Q 001452 690 ISSGEKETHKLLQPADKTLKAMAIEFAEYQVCVDVFITTQTYVDIASISVIPKTTGGQVYYYYPFSALSDPAKLYNDLRW 769 (1075)
Q Consensus 690 ~~~gt~ke~~ll~pa~~FYk~LA~~~~~~gIsVDlFl~s~~~~DlatL~~La~~TGG~v~~Y~~F~~~~d~~kL~~dL~r 769 (1075)
+ +.+..+.+.+.+|-||++.++.+ +..+..||+.|||..+.. .|...|.+-|..
T Consensus 118 ----------------d-i~~ti~~l~~~~IrvsvI~laaE---v~I~k~i~~~T~G~y~V~------lde~H~~~lL~~ 171 (193)
T PF04056_consen 118 ----------------D-IHETIESLKKENIRVSVISLAAE---VYICKKICKETGGTYGVI------LDEDHFKELLME 171 (193)
T ss_pred ----------------h-HHHHHHHHHHcCCEEEEEEEhHH---HHHHHHHHHhhCCEEEEe------cCHHHHHHHHHh
Confidence 2 23667789999999999999864 778899999999954443 234556554444
Q ss_pred hc
Q 001452 770 NI 771 (1075)
Q Consensus 770 ~L 771 (1075)
.+
T Consensus 172 ~~ 173 (193)
T PF04056_consen 172 HV 173 (193)
T ss_pred hC
Confidence 43
No 58
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=96.70 E-value=0.0068 Score=73.91 Aligned_cols=12 Identities=25% Similarity=0.243 Sum_probs=5.9
Q ss_pred HHHHhhcccCCC
Q 001452 935 YTLALIKSTGLR 946 (1075)
Q Consensus 935 yil~LlKS~~Lr 946 (1075)
++-+|+-..+||
T Consensus 1046 lLeaLqsgaafr 1057 (1102)
T KOG1924|consen 1046 LLEALQSGAAFR 1057 (1102)
T ss_pred HHHHHHhhcccc
Confidence 344455555554
No 59
>COG4245 TerY Uncharacterized protein encoded in toxicity protection region of plasmid R478, contains von Willebrand factor (vWF) domain [General function prediction only]
Probab=96.33 E-value=0.052 Score=57.12 Aligned_cols=156 Identities=18% Similarity=0.296 Sum_probs=92.3
Q ss_pred EEEEEEcchhHHhhhHHHHHHHHHHHHHhcCCCC----CCcEEEEEEeCCeEEEEecCCCCCCceEeecCCccccccCCc
Q 001452 536 FFFLIDVSMNALQTGATAAACSAISQVISDLPEG----PRTMVGIATFDSTIHFYNLKRALQQPLMLIVPDVEDVYTPLQ 611 (1075)
Q Consensus 536 yvFvIDvS~~av~sG~l~~v~~aI~~~L~~Lp~~----~rt~VGiITFDs~VhfYnl~~~l~qpqmlVvsDldd~FvPl~ 611 (1075)
.+|++|+|.+.+.. -++++-..|+..++.|..+ .+.+|+|||||+.++.|. | +.|++..+.|
T Consensus 6 ~~lllDtSgSM~Ge-~IealN~Glq~m~~~Lkqdp~Ale~v~lsIVTF~~~a~~~~-------p----f~~~~nF~~p-- 71 (207)
T COG4245 6 CYLLLDTSGSMIGE-PIEALNAGLQMMIDTLKQDPYALERVELSIVTFGGPARVIQ-------P----FTDAANFNPP-- 71 (207)
T ss_pred EEEEEecCcccccc-cHHHHHHHHHHHHHHHHhChhhhheeEEEEEEecCcceEEe-------c----hhhHhhcCCC--
Confidence 35699999987543 3567777777777777654 467999999998777653 1 2233332222
Q ss_pred ccceeehHHhHHHHHHHHhhcCccccCCCCccchHHHHHHHHHHHHHhc------CC------EEEEEecCCCCcCcccc
Q 001452 612 SDIIVPVSECRQHLELLLESIPSMFQNNRTAESAFGAAVKAAFLALKST------GG------KLLVFQSVLPSVGIGAL 679 (1075)
Q Consensus 612 ~~lLv~l~esr~~I~~lLd~Lp~~f~~~~~~~~~lG~AL~aA~~lL~~~------GG------kIivF~sg~Pt~GpG~L 679 (1075)
.+. ....+.+|+||+.|.++++.. .| -|++.++|-||-
T Consensus 72 ----------------------~L~---a~GgT~lGaAl~~a~d~Ie~~~~~~~a~~kgdyrP~vfLiTDG~PtD----- 121 (207)
T COG4245 72 ----------------------ILT---AQGGTPLGAALTLALDMIEERKRKYDANGKGDYRPWVFLITDGEPTD----- 121 (207)
T ss_pred ----------------------cee---cCCCCchHHHHHHHHHHHHHHHhhcccCCccccceEEEEecCCCcch-----
Confidence 111 236788999999999999641 12 466667776631
Q ss_pred cccccccCCCCCCCccccccccchhHHHHHHHHHHHH--hcCcEEEEEEecCCccCccccccccccccceEEEEcCCCcc
Q 001452 680 SAREAEGRSNISSGEKETHKLLQPADKTLKAMAIEFA--EYQVCVDVFITTQTYVDIASISVIPKTTGGQVYYYYPFSAL 757 (1075)
Q Consensus 680 ~~re~~~r~~~~~gt~ke~~ll~pa~~FYk~LA~~~~--~~gIsVDlFl~s~~~~DlatL~~La~~TGG~v~~Y~~F~~~ 757 (1075)
++=+.++.... +...+|=.|.+..+..|...|.++.+ +|..+..
T Consensus 122 --------------------------~w~~~~~~~~~~~~~~k~v~a~~~G~~~ad~~~L~qit~----~V~~~~t---- 167 (207)
T COG4245 122 --------------------------DWQAGAALVFQGERRAKSVAAFSVGVQGADNKTLNQITE----KVRQFLT---- 167 (207)
T ss_pred --------------------------HHHhHHHHhhhcccccceEEEEEecccccccHHHHHHHH----hhccccc----
Confidence 11111111111 12234555666666677777776653 3333333
Q ss_pred cchHHHHHHHHH
Q 001452 758 SDPAKLYNDLRW 769 (1075)
Q Consensus 758 ~d~~kL~~dL~r 769 (1075)
.|..+|.+-+.|
T Consensus 168 ~d~~~f~~fFkW 179 (207)
T COG4245 168 LDGLQFREFFKW 179 (207)
T ss_pred cchHHHHHHHHH
Confidence 356677766655
No 60
>KOG2884 consensus 26S proteasome regulatory complex, subunit RPN10/PSMD4 [Posttranslational modification, protein turnover, chaperones]
Probab=96.15 E-value=0.085 Score=56.46 Aligned_cols=155 Identities=19% Similarity=0.235 Sum_probs=96.1
Q ss_pred EEEEEEEcchhHHhhhH----HHHHHHHHHHHHh-cCCCCCCcEEEEEEeCC-eEEEEecCCCCCCceEeecCCcccccc
Q 001452 535 VFFFLIDVSMNALQTGA----TAAACSAISQVIS-DLPEGPRTMVGIATFDS-TIHFYNLKRALQQPLMLIVPDVEDVYT 608 (1075)
Q Consensus 535 ~yvFvIDvS~~av~sG~----l~~v~~aI~~~L~-~Lp~~~rt~VGiITFDs-~VhfYnl~~~l~qpqmlVvsDldd~Fv 608 (1075)
+.+.|||-|.-+.+.-| +++=+++|.-... ++..++...|||||..+ .+.+..
T Consensus 5 atmi~iDNse~mrNgDy~PtRf~aQ~daVn~v~~~K~~snpEntvGiitla~a~~~vLs--------------------- 63 (259)
T KOG2884|consen 5 ATMICIDNSEYMRNGDYLPTRFQAQKDAVNLVCQAKLRSNPENTVGIITLANASVQVLS--------------------- 63 (259)
T ss_pred eEEEEEeChHHhhcCCCChHHHHHHHHHHHHHHHhhhcCCcccceeeEeccCCCceeee---------------------
Confidence 56889999887654333 4444455444332 34445666899998743 332221
Q ss_pred CCcccceeehHHhHHHHHHHHhhcCccccCCCCccchHHHHHHHHHHHHHhcC-----CEEEEEecCCCCcCcccccccc
Q 001452 609 PLQSDIIVPVSECRQHLELLLESIPSMFQNNRTAESAFGAAVKAAFLALKSTG-----GKLLVFQSVLPSVGIGALSARE 683 (1075)
Q Consensus 609 Pl~~~lLv~l~esr~~I~~lLd~Lp~~f~~~~~~~~~lG~AL~aA~~lL~~~G-----GkIivF~sg~Pt~GpG~L~~re 683 (1075)
.+...+-.|...|..|.- ..+.-+..+|+.|..+||+.- -||++|.+++-.
T Consensus 64 --------T~T~d~gkils~lh~i~~------~g~~~~~~~i~iA~lalkhRqnk~~~~riVvFvGSpi~---------- 119 (259)
T KOG2884|consen 64 --------TLTSDRGKILSKLHGIQP------HGKANFMTGIQIAQLALKHRQNKNQKQRIVVFVGSPIE---------- 119 (259)
T ss_pred --------eccccchHHHHHhcCCCc------CCcccHHHHHHHHHHHHHhhcCCCcceEEEEEecCcch----------
Confidence 111223344445555542 345569999999999999742 589999987621
Q ss_pred cccCCCCCCCccccccccchhHHHHHHHHHHHHhcCcEEEEEEecCCccCccccccccccccc-----eEEEEcC
Q 001452 684 AEGRSNISSGEKETHKLLQPADKTLKAMAIEFAEYQVCVDVFITTQTYVDIASISVIPKTTGG-----QVYYYYP 753 (1075)
Q Consensus 684 ~~~r~~~~~gt~ke~~ll~pa~~FYk~LA~~~~~~gIsVDlFl~s~~~~DlatL~~La~~TGG-----~v~~Y~~ 753 (1075)
+.|+ -.-++|+++.+++|.|||+-|.....+-.-+......++| ++...+.
T Consensus 120 -----------e~ek--------eLv~~akrlkk~~Vaidii~FGE~~~~~e~l~~fida~N~~~~gshlv~Vpp 175 (259)
T KOG2884|consen 120 -----------ESEK--------ELVKLAKRLKKNKVAIDIINFGEAENNTEKLFEFIDALNGKGDGSHLVSVPP 175 (259)
T ss_pred -----------hhHH--------HHHHHHHHHHhcCeeEEEEEeccccccHHHHHHHHHHhcCCCCCceEEEeCC
Confidence 1122 2357899999999999999998766654444444444444 3666665
No 61
>cd01462 VWA_YIEM_type VWA YIEM type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=96.09 E-value=0.13 Score=51.85 Aligned_cols=130 Identities=11% Similarity=0.046 Sum_probs=74.8
Q ss_pred EEEEEEcchhHHhhhHHHHHHHHHHHHHhcCCCCCCcEEEEEEeCCeEEEEecCCCCCCceEeecCCccccccCCcccce
Q 001452 536 FFFLIDVSMNALQTGATAAACSAISQVISDLPEGPRTMVGIATFDSTIHFYNLKRALQQPLMLIVPDVEDVYTPLQSDII 615 (1075)
Q Consensus 536 yvFvIDvS~~av~sG~l~~v~~aI~~~L~~Lp~~~rt~VGiITFDs~VhfYnl~~~l~qpqmlVvsDldd~FvPl~~~lL 615 (1075)
++|+||+|.+...+ -++.++..+...++.+.. .+.+|++|+|++..+.+.+. +.
T Consensus 3 v~illD~SgSM~~~-k~~~a~~~~~~l~~~~~~-~~~~v~li~F~~~~~~~~~~------------~~------------ 56 (152)
T cd01462 3 VILLVDQSGSMYGA-PEEVAKAVALALLRIALA-ENRDTYLILFDSEFQTKIVD------------KT------------ 56 (152)
T ss_pred EEEEEECCCCCCCC-HHHHHHHHHHHHHHHHHH-cCCcEEEEEeCCCceEEecC------------Cc------------
Confidence 68999999987532 234445555555554432 12589999998773222110 00
Q ss_pred eehHHhHHHHHHHHhhcCccccCCCCccchHHHHHHHHHHHHHhc---CCEEEEEecCCCCcCcccccccccccCCCCCC
Q 001452 616 VPVSECRQHLELLLESIPSMFQNNRTAESAFGAAVKAAFLALKST---GGKLLVFQSVLPSVGIGALSAREAEGRSNISS 692 (1075)
Q Consensus 616 v~l~esr~~I~~lLd~Lp~~f~~~~~~~~~lG~AL~aA~~lL~~~---GGkIivF~sg~Pt~GpG~L~~re~~~r~~~~~ 692 (1075)
+. +..+++.|..+ .....+.++.||..+.+.++.. .+.|+++++|..+. .
T Consensus 57 ----~~---~~~~~~~l~~~---~~~ggT~l~~al~~a~~~l~~~~~~~~~ivliTDG~~~~-----------~------ 109 (152)
T cd01462 57 ----DD---LEEPVEFLSGV---QLGGGTDINKALRYALELIERRDPRKADIVLITDGYEGG-----------V------ 109 (152)
T ss_pred ----cc---HHHHHHHHhcC---CCCCCcCHHHHHHHHHHHHHhcCCCCceEEEECCCCCCC-----------C------
Confidence 01 12233333322 1245678999999999998763 46788888774110 0
Q ss_pred CccccccccchhHHHHHHHHHHHHhcCcEEEEEEecCC
Q 001452 693 GEKETHKLLQPADKTLKAMAIEFAEYQVCVDVFITTQT 730 (1075)
Q Consensus 693 gt~ke~~ll~pa~~FYk~LA~~~~~~gIsVDlFl~s~~ 730 (1075)
..+.. +.+....+.++.|..|.++..
T Consensus 110 -----------~~~~~-~~~~~~~~~~~~v~~~~~g~~ 135 (152)
T cd01462 110 -----------SDELL-REVELKRSRVARFVALALGDH 135 (152)
T ss_pred -----------CHHHH-HHHHHHHhcCcEEEEEEecCC
Confidence 01222 334444566799999988764
No 62
>TIGR00578 ku70 ATP-dependent DNA helicase ii, 70 kDa subunit (ku70). Proteins in this family are involved in non-homologous end joining, a process used for the repair of double stranded DNA breaks. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). Cutoff does not detect the putative ku70 homologs in yeast.
Probab=95.78 E-value=0.15 Score=63.17 Aligned_cols=155 Identities=9% Similarity=0.201 Sum_probs=87.6
Q ss_pred EEEEEEEcchhHHh-------hhHHHHHHHHHHHHHhcC-CCCCCcEEEEEEeCCeEEEEecCCCCCCceEeecCCcccc
Q 001452 535 VFFFLIDVSMNALQ-------TGATAAACSAISQVISDL-PEGPRTMVGIATFDSTIHFYNLKRALQQPLMLIVPDVEDV 606 (1075)
Q Consensus 535 ~yvFvIDvS~~av~-------sG~l~~v~~aI~~~L~~L-p~~~rt~VGiITFDs~VhfYnl~~~l~qpqmlVvsDldd~ 606 (1075)
..|||||||.++.+ ..-+..++++|...+.+. -.+++..|||+.|++.=+ ++.+.-..++|+.||+.+
T Consensus 12 ailflIDvs~sM~~~~~~~~~~s~~~~al~~i~~l~q~kIis~~~D~vGivlfgT~~t----~n~~~~~~i~v~~~L~~p 87 (584)
T TIGR00578 12 SLIFLVDASKAMFEESQGEDELTPFDMSIQCIQSVYTSKIISSDKDLLAVVFYGTEKD----KNSVNFKNIYVLQELDNP 87 (584)
T ss_pred EEEEEEECCHHHcCCCcCcCcCChHHHHHHHHHHHHHhcCCCCCCCeEEEEEEeccCC----CCccCCCceEEEeeCCCC
Confidence 78999999998764 123456666777766653 234568999998865322 122233456777776643
Q ss_pred ccCCcccceeehHHhHHHHHHHHhh-cCccccC--CCCccchHHHHHHHHHHHHHh----cC-CEEEEEecCCCCcCccc
Q 001452 607 YTPLQSDIIVPVSECRQHLELLLES-IPSMFQN--NRTAESAFGAAVKAAFLALKS----TG-GKLLVFQSVLPSVGIGA 678 (1075)
Q Consensus 607 FvPl~~~lLv~l~esr~~I~~lLd~-Lp~~f~~--~~~~~~~lG~AL~aA~~lL~~----~G-GkIivF~sg~Pt~GpG~ 678 (1075)
-. +....|++|++. -..-|.. .......+..||.+|..++.. .+ =||++||+.---
T Consensus 88 ~a-----------~~i~~L~~l~~~~~~~~~~~~~~~~~~~~l~daL~~~~~~f~~~~~k~~~kRI~lfTd~D~P----- 151 (584)
T TIGR00578 88 GA-----------KRILELDQFKGDQGPKKFRDTYGHGSDYSLSEVLWVCANLFSDVQFRMSHKRIMLFTNEDNP----- 151 (584)
T ss_pred CH-----------HHHHHHHHHhhccCccchhhccCCCCCCcHHHHHHHHHHHHHhcchhhcCcEEEEECCCCCC-----
Confidence 11 111223333332 1111110 112234789999999999965 34 369999853211
Q ss_pred ccccccccCCCCCCCccccccccchhHHHHHHHHHHHHhcCcEEEEEEec
Q 001452 679 LSAREAEGRSNISSGEKETHKLLQPADKTLKAMAIEFAEYQVCVDVFITT 728 (1075)
Q Consensus 679 L~~re~~~r~~~~~gt~ke~~ll~pa~~FYk~LA~~~~~~gIsVDlFl~s 728 (1075)
++.++. ...-=...|.++...||.|++|.++
T Consensus 152 -------------~~~~~~------~~~~a~~~a~dl~~~gi~ielf~l~ 182 (584)
T TIGR00578 152 -------------HGNDSA------KASRARTKAGDLRDTGIFLDLMHLK 182 (584)
T ss_pred -------------CCCchh------HHHHHHHHHHHHHhcCeEEEEEecC
Confidence 111110 0011134578889999999999764
No 63
>smart00262 GEL Gelsolin homology domain. Gelsolin/severin/villin homology domain. Calcium-binding and actin-binding. Both intra- and extracellular domains.
Probab=95.69 E-value=0.015 Score=53.92 Aligned_cols=35 Identities=17% Similarity=0.507 Sum_probs=30.9
Q ss_pred ccCccccccCCcEEEEEcCCeEEEEeCCCCCHHHH
Q 001452 996 LPLSSEHVSDEGIYLLENGEDALIYIGSSVDSSIL 1030 (1075)
Q Consensus 996 l~LS~e~L~~~GiYLLD~G~~i~LwvG~~v~p~ll 1030 (1075)
+.++.+.|.++.+||||+|..||+|+|+.++....
T Consensus 16 ~~~~~~~L~s~d~fild~~~~iyvW~G~~as~~ek 50 (90)
T smart00262 16 VPFSQGSLNSGDCYILDTGSEIYVWVGKKSSQDEK 50 (90)
T ss_pred cCCCHHHCCCCCEEEEECCCEEEEEECCCCCHHHH
Confidence 45778899999999999999999999999996533
No 64
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=95.36 E-value=0.092 Score=64.57 Aligned_cols=8 Identities=25% Similarity=0.841 Sum_probs=3.2
Q ss_pred HHHHHHHH
Q 001452 761 AKLYNDLR 768 (1075)
Q Consensus 761 ~kL~~dL~ 768 (1075)
+.|+.||+
T Consensus 976 EEFFaDi~ 983 (1102)
T KOG1924|consen 976 EEFFADIR 983 (1102)
T ss_pred HHHHHHHH
Confidence 33444443
No 65
>cd01457 vWA_ORF176_type VWA ORF176 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses. In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most
Probab=94.97 E-value=0.19 Score=53.49 Aligned_cols=102 Identities=15% Similarity=0.198 Sum_probs=58.8
Q ss_pred EEEEEEEcchhHHhh----h--HHHHHHHHHHHHHhcCCCCCCcEEEEEEeCCeEEEEecCCCCCCceEeecCCcccccc
Q 001452 535 VFFFLIDVSMNALQT----G--ATAAACSAISQVISDLPEGPRTMVGIATFDSTIHFYNLKRALQQPLMLIVPDVEDVYT 608 (1075)
Q Consensus 535 ~yvFvIDvS~~av~s----G--~l~~v~~aI~~~L~~Lp~~~rt~VGiITFDs~VhfYnl~~~l~qpqmlVvsDldd~Fv 608 (1075)
-++|+||+|.++... + -++.+++++...++.+......+|++++|++..+-+ .
T Consensus 4 dvv~~ID~SgSM~~~~~~~~~~k~~~ak~~~~~l~~~~~~~D~d~i~l~~f~~~~~~~---------------------~ 62 (199)
T cd01457 4 DYTLLIDKSGSMAEADEAKERSRWEEAQESTRALARKCEEYDSDGITVYLFSGDFRRY---------------------D 62 (199)
T ss_pred CEEEEEECCCcCCCCCCCCCchHHHHHHHHHHHHHHHHHhcCCCCeEEEEecCCcccc---------------------C
Confidence 479999999987532 1 345566666665554433223468888875543111 1
Q ss_pred CCcccceeehHHhHHHHHHHHhhcCccccCCCCccchHHHHHHHHHH-HHHhc--------CCEEEEEecCCCC
Q 001452 609 PLQSDIIVPVSECRQHLELLLESIPSMFQNNRTAESAFGAAVKAAFL-ALKST--------GGKLLVFQSVLPS 673 (1075)
Q Consensus 609 Pl~~~lLv~l~esr~~I~~lLd~Lp~~f~~~~~~~~~lG~AL~aA~~-lL~~~--------GGkIivF~sg~Pt 673 (1075)
++ . ++.+.++++.+.. ...+.++.||+.++. +++.. +.-||++++|.++
T Consensus 63 ~~--------~--~~~v~~~~~~~~p------~G~T~l~~~l~~a~~~~~~~~~~~~~~p~~~~vIiiTDG~~~ 120 (199)
T cd01457 63 NV--------N--SSKVDQLFAENSP------DGGTNLAAVLQDALNNYFQRKENGATCPEGETFLVITDGAPD 120 (199)
T ss_pred Cc--------C--HHHHHHHHhcCCC------CCcCcHHHHHHHHHHHHHHHHhhccCCCCceEEEEEcCCCCC
Confidence 11 1 4455566655432 255789999998874 33321 3557777777653
No 66
>cd01460 vWA_midasin VWA_Midasin: Midasin is a member of the AAA ATPase family. The proteins of this family are unified by their common archetectural organization that is based upon a conserved ATPase domain. The AAA domain of midasin contains six tandem AAA protomers. The AAA domains in midasin is followed by a D/E rich domain that is following by a VWA domain. The members of this subgroup have a conserved MIDAS motif. The function of this domain is not exactly known although it has been speculated to play a crucial role in midasin function.
Probab=93.91 E-value=1 Score=50.56 Aligned_cols=133 Identities=17% Similarity=0.229 Sum_probs=78.3
Q ss_pred CCcEEEEEEEcchhHHhhhH----HHHHHHHHHHHHhcCCCCCCcEEEEEEeCCeEEEEecCCCCCCceEeecCCccccc
Q 001452 532 MPAVFFFLIDVSMNALQTGA----TAAACSAISQVISDLPEGPRTMVGIATFDSTIHFYNLKRALQQPLMLIVPDVEDVY 607 (1075)
Q Consensus 532 ~pp~yvFvIDvS~~av~sG~----l~~v~~aI~~~L~~Lp~~~rt~VGiITFDs~VhfYnl~~~l~qpqmlVvsDldd~F 607 (1075)
....++|+||+|.++.++.. ++ .+..|.++|+.+..+ +|||+.|.+.+. ++.++++.|
T Consensus 59 r~~qIvlaID~S~SM~~~~~~~~ale-ak~lIs~al~~Le~g---~vgVv~Fg~~~~--------------~v~Plt~d~ 120 (266)
T cd01460 59 RDYQILIAIDDSKSMSENNSKKLALE-SLCLVSKALTLLEVG---QLGVCSFGEDVQ--------------ILHPFDEQF 120 (266)
T ss_pred cCceEEEEEecchhcccccccccHHH-HHHHHHHHHHhCcCC---cEEEEEeCCCce--------------EeCCCCCCc
Confidence 45689999999999766442 33 345677777777664 899999987542 222333222
Q ss_pred cCCcccceeehHHhHHHHHHHHhhcCc-cccCCCCccchHHHHHHHHHHHHHhc-----CC---EEE-EEecCCCCcCcc
Q 001452 608 TPLQSDIIVPVSECRQHLELLLESIPS-MFQNNRTAESAFGAAVKAAFLALKST-----GG---KLL-VFQSVLPSVGIG 677 (1075)
Q Consensus 608 vPl~~~lLv~l~esr~~I~~lLd~Lp~-~f~~~~~~~~~lG~AL~aA~~lL~~~-----GG---kIi-vF~sg~Pt~GpG 677 (1075)
.. +..++.+.. .|. ..++.++.||..|...++.. +| +++ +.++|-+.
T Consensus 121 ---------------~~-~a~~~~l~~~~f~---~~~Tni~~aL~~a~~~f~~~~~~~~s~~~~qlilLISDG~~~---- 177 (266)
T cd01460 121 ---------------SS-QSGPRILNQFTFQ---QDKTDIANLLKFTAQIFEDARTQSSSGSLWQLLLIISDGRGE---- 177 (266)
T ss_pred ---------------hh-hHHHHHhCcccCC---CCCCcHHHHHHHHHHHHHhhhccccccccccEEEEEECCCcc----
Confidence 11 222333322 222 23456899999999988754 32 444 44444310
Q ss_pred cccccccccCCCCCCCccccccccchhHHHHHHHHHHHHhcCcEEEEEEecCC
Q 001452 678 ALSAREAEGRSNISSGEKETHKLLQPADKTLKAMAIEFAEYQVCVDVFITTQT 730 (1075)
Q Consensus 678 ~L~~re~~~r~~~~~gt~ke~~ll~pa~~FYk~LA~~~~~~gIsVDlFl~s~~ 730 (1075)
. + ... -+.++.++.+.+|.|-++++-+.
T Consensus 178 -~----~---------e~~-----------~~~~~r~a~e~~i~l~~I~ld~~ 205 (266)
T cd01460 178 -F----S---------EGA-----------QKVRLREAREQNVFVVFIIIDNP 205 (266)
T ss_pred -c----C---------ccH-----------HHHHHHHHHHcCCeEEEEEEcCC
Confidence 0 0 000 12447788999999888877553
No 67
>KOG1984 consensus Vesicle coat complex COPII, subunit SFB3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.76 E-value=6.7 Score=49.90 Aligned_cols=57 Identities=39% Similarity=0.715 Sum_probs=44.5
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCCCC
Q 001452 1 MAASVPPGAPRQQPPPPPPNYNPNLQQNPNSLSDNFQNLNLNRPVSMPNSGPRPTPFAQSPQ 62 (1075)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 62 (1075)
|.+.+|||+||++ .|+|+|+++. .+++++++.|++++-+++|+..++++.|-|++|+
T Consensus 1 ~~~~~ppg~p~p~--~g~~~~~~g~---~~~~a~~~~~~~~~p~p~~~~~~p~~~ppg~~p~ 57 (1007)
T KOG1984|consen 1 MSQGVPPGQPQPN--SGPPNFYGGS---SNSLAQAMPNGSINPPPPMQGTGPRGPPPGAPPQ 57 (1007)
T ss_pred CCCCCCCCCCCCC--CCCCCcCCCC---CchhhhhccCCccCCCCCCCCCCCCCCCCCCCCC
Confidence 7889999999876 4488888877 6779999999999987777766666555555554
No 68
>KOG0443 consensus Actin regulatory proteins (gelsolin/villin family) [Cytoskeleton]
Probab=93.74 E-value=0.069 Score=66.22 Aligned_cols=62 Identities=11% Similarity=0.320 Sum_probs=46.3
Q ss_pred cccccceEEEeccCCCCCCCCCCCCcccCccccccCCcEEEEEcCCeEEEEeCCCCCHHHHHHhh
Q 001452 970 VPFVYPRMVAIHDLDKGEDGSIIPPFLPLSSEHVSDEGIYLLENGEDALIYIGSSVDSSILHQLF 1034 (1075)
Q Consensus 970 ~~~lYPrL~~lh~l~~~d~~~~lP~~l~LS~e~L~~~GiYLLD~G~~i~LwvG~~v~p~ll~~lF 1034 (1075)
....-||||..+.-. +....-+....+-+.|..+.|||||++..+|||||+.++++..+.++
T Consensus 615 ~~~~~PrLF~Cs~~~---g~f~~~EI~~F~QdDL~tdDi~lLDt~~evfvWvG~~a~~~eK~~Al 676 (827)
T KOG0443|consen 615 KPERDPRLFSCSNKT---GSFVVEEIYNFTQDDLMTDDIMLLDTWSEVFVWVGQEANEKEKEEAL 676 (827)
T ss_pred cCCCCCcEEEEEecC---CcEEEEEecCcchhhccccceEEEecCceEEEEecCCCChhHHHHHH
Confidence 345678999988642 11111223467888999999999999999999999999998666443
No 69
>PF03731 Ku_N: Ku70/Ku80 N-terminal alpha/beta domain; InterPro: IPR005161 The Ku heterodimer (composed of Ku70 P12956 from SWISSPROT and Ku80 P13010 from SWISSPROT) contributes to genomic integrity through its ability to bind DNA double-strand breaks and facilitate repair by the non-homologous end-joining pathway. This is the N-terminal alpha/beta domain. This domain only makes a small contribution to the dimer interface. The domain comprises a six stranded beta sheet of the Rossman fold [].; PDB: 1JEQ_A 1JEY_A.
Probab=93.51 E-value=0.63 Score=50.29 Aligned_cols=154 Identities=15% Similarity=0.231 Sum_probs=73.4
Q ss_pred EEEEEEEcchhHHhh-----hHHHHHHHHHHHHHhcCC-CCCCcEEEEEEeCCeEEEEecCCCCCCceEeecCCcccccc
Q 001452 535 VFFFLIDVSMNALQT-----GATAAACSAISQVISDLP-EGPRTMVGIATFDSTIHFYNLKRALQQPLMLIVPDVEDVYT 608 (1075)
Q Consensus 535 ~yvFvIDvS~~av~s-----G~l~~v~~aI~~~L~~Lp-~~~rt~VGiITFDs~VhfYnl~~~l~qpqmlVvsDldd~Fv 608 (1075)
+.|||||||.+..+. .-++.++++|...+.+.- ..+...||+|.|++.-.=-. .....-..+.++.+++-+
T Consensus 1 ~~vflID~s~sM~~~~~~~~~~l~~al~~i~~~~~~ki~~~~kD~vgvvl~gt~~t~n~-~~~~~~~~i~~l~~l~~~-- 77 (224)
T PF03731_consen 1 ATVFLIDVSPSMFEPSSESESPLEEALKAIEDLMQQKIISSPKDEVGVVLFGTDETNNP-DEDSGYENIFVLQPLDPP-- 77 (224)
T ss_dssp EEEEEEE-SCGGGS-BTTCS-HHHHHHHHHHHHHHHHHHTT---EEEEEEES-SS-BST--TTT-STTEEEEEECC----
T ss_pred CEEEEEECCHHHCCCCCCcchhHHHHHHHHHHHHHHHHcCCCCCeEEEEEEcCCCCCCc-ccccCCCceEEeecCCcc--
Confidence 469999999987632 246666777776665421 22336899998754321000 001111223333322211
Q ss_pred CCcccceeehHHhHHHHHHHHhhcCc----cccCCCCccchHHHHHHHHHHHHHh--c-----CCEEEEEecCCCCcCcc
Q 001452 609 PLQSDIIVPVSECRQHLELLLESIPS----MFQNNRTAESAFGAAVKAAFLALKS--T-----GGKLLVFQSVLPSVGIG 677 (1075)
Q Consensus 609 Pl~~~lLv~l~esr~~I~~lLd~Lp~----~f~~~~~~~~~lG~AL~aA~~lL~~--~-----GGkIivF~sg~Pt~GpG 677 (1075)
+-+.|..|.+.+.. ........+..+..||.+|..+++. . .-||++||+.- +|
T Consensus 78 ------------~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~al~v~~~~~~~~~~~~k~~~krI~l~Td~d---~p- 141 (224)
T PF03731_consen 78 ------------SAERLKELEELLKPGDKFENFFSGSDEGDLSDALWVASDMFRERTCKKKKNKKRIFLFTDND---GP- 141 (224)
T ss_dssp ------------BHHHHHHHHTTSHHHHHHHHHC-SSS---HHHHHHHHHHHHHCHCTTS-ECEEEEEEEES-S---ST-
T ss_pred ------------CHHHHHHHHHhhcccccccccCCCCCccCHHHHHHHHHHHHHHHhhcccCCCcEEEEEeCCC---CC-
Confidence 12333333333322 0011234456799999999999975 1 23677777532 11
Q ss_pred cccccccccCCCCCCCccccccccchhHHHHHH-HHHHHHhcCcEEEEEEe
Q 001452 678 ALSAREAEGRSNISSGEKETHKLLQPADKTLKA-MAIEFAEYQVCVDVFIT 727 (1075)
Q Consensus 678 ~L~~re~~~r~~~~~gt~ke~~ll~pa~~FYk~-LA~~~~~~gIsVDlFl~ 727 (1075)
+..+++ -+.-.++ .+.++...+|.+++|.+
T Consensus 142 --------------~~~~~~------~~~~~~~l~~~Dl~~~~i~~~~~~l 172 (224)
T PF03731_consen 142 --------------HEDDDE------LERIIQKLKAKDLQDNGIEIELFFL 172 (224)
T ss_dssp --------------TT-CCC------HHHHHHHHHHHHHHHHTEEEEEEEC
T ss_pred --------------CCCHHH------HHHHHHhhccccchhcCcceeEeec
Confidence 000000 0111122 27788899999999988
No 70
>cd01455 vWA_F11C1-5a_type Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=93.32 E-value=2 Score=45.98 Aligned_cols=98 Identities=13% Similarity=0.138 Sum_probs=60.8
Q ss_pred HhHHHHHHHHhhcCccccCCCCccchHHHHHHHHHHHHH-hc--CCEEEE-EecCCCCcCcccccccccccCCCCCCCcc
Q 001452 620 ECRQHLELLLESIPSMFQNNRTAESAFGAAVKAAFLALK-ST--GGKLLV-FQSVLPSVGIGALSAREAEGRSNISSGEK 695 (1075)
Q Consensus 620 esr~~I~~lLd~Lp~~f~~~~~~~~~lG~AL~aA~~lL~-~~--GGkIiv-F~sg~Pt~GpG~L~~re~~~r~~~~~gt~ 695 (1075)
+..+.+..+|+.+.--+.. ..++ .||..|++-|+ .. ..||++ +++|-=|. ++
T Consensus 72 ~~~~~l~~~l~~~q~g~ag---~~Ta--dAi~~av~rl~~~~~a~~kvvILLTDG~n~~-----------------~~-- 127 (191)
T cd01455 72 ERLETLKMMHAHSQFCWSG---DHTV--EATEFAIKELAAKEDFDEAIVIVLSDANLER-----------------YG-- 127 (191)
T ss_pred hHHHHHHHHHHhcccCccC---ccHH--HHHHHHHHHHHhcCcCCCcEEEEEeCCCcCC-----------------CC--
Confidence 3446777788876432222 2333 88888888886 42 345554 44442110 11
Q ss_pred ccccccchhHHHHHHH-HHHHHhcCcEEEEEEecCCccCccccccccccccceEEEEcC
Q 001452 696 ETHKLLQPADKTLKAM-AIEFAEYQVCVDVFITTQTYVDIASISVIPKTTGGQVYYYYP 753 (1075)
Q Consensus 696 ke~~ll~pa~~FYk~L-A~~~~~~gIsVDlFl~s~~~~DlatL~~La~~TGG~v~~Y~~ 753 (1075)
..| .+. |+.+++.||-|..+.+... |-.++..+++.|||+.|.-.+
T Consensus 128 -----i~P-----~~aAa~lA~~~gV~iytIgiG~~--d~~~l~~iA~~tgG~~F~A~d 174 (191)
T cd01455 128 -----IQP-----KKLADALAREPNVNAFVIFIGSL--SDEADQLQRELPAGKAFVCMD 174 (191)
T ss_pred -----CCh-----HHHHHHHHHhCCCEEEEEEecCC--CHHHHHHHHhCCCCcEEEeCC
Confidence 111 243 3556678998888887753 667799999999999998765
No 71
>COG5148 RPN10 26S proteasome regulatory complex, subunit RPN10/PSMD4 [Posttranslational modification, protein turnover, chaperones]
Probab=92.86 E-value=1.9 Score=45.56 Aligned_cols=133 Identities=19% Similarity=0.272 Sum_probs=87.2
Q ss_pred cEEEEEEEcchhHHhhhH----HHHHHHHHHHHHhc-CCCCCCcEEEEEEeCCeEEEEecCCCCCCceEeecCCcccccc
Q 001452 534 AVFFFLIDVSMNALQTGA----TAAACSAISQVISD-LPEGPRTMVGIATFDSTIHFYNLKRALQQPLMLIVPDVEDVYT 608 (1075)
Q Consensus 534 p~yvFvIDvS~~av~sG~----l~~v~~aI~~~L~~-Lp~~~rt~VGiITFDs~VhfYnl~~~l~qpqmlVvsDldd~Fv 608 (1075)
-+.|.+||-|.-+.+..+ +++-++++..++.. ..+++...||||+.- ..+|+++
T Consensus 4 EatvvliDNse~s~NgDy~ptRFeAQkd~ve~if~~K~ndnpEntiGli~~~-----------~a~p~vl---------- 62 (243)
T COG5148 4 EATVVLIDNSEASQNGDYLPTRFEAQKDAVESIFSKKFNDNPENTIGLIPLV-----------QAQPNVL---------- 62 (243)
T ss_pred ceEEEEEeChhhhhcCCCCcHHHHHHHHHHHHHHHHHhcCCccceeeeeecc-----------cCCcchh----------
Confidence 367899999987765333 45666677666654 334566689998742 1233321
Q ss_pred CCcccceeehHHhHHHHHHHHhhcCccccCCCCccchHHHHHHHHHHHHHhc---C--CEEEEEecCCCCcCcccccccc
Q 001452 609 PLQSDIIVPVSECRQHLELLLESIPSMFQNNRTAESAFGAAVKAAFLALKST---G--GKLLVFQSVLPSVGIGALSARE 683 (1075)
Q Consensus 609 Pl~~~lLv~l~esr~~I~~lLd~Lp~~f~~~~~~~~~lG~AL~aA~~lL~~~---G--GkIivF~sg~Pt~GpG~L~~re 683 (1075)
..+...+-.|...|..|+- +.+.-++-+|+.|..+|++. | -+|++|.+++-.
T Consensus 63 -------sT~T~~~gkilt~lhd~~~------~g~a~~~~~lqiaql~lkhR~nk~q~qriVaFvgSpi~---------- 119 (243)
T COG5148 63 -------STPTKQRGKILTFLHDIRL------HGGADIMRCLQIAQLILKHRDNKGQRQRIVAFVGSPIQ---------- 119 (243)
T ss_pred -------ccchhhhhHHHHHhccccc------cCcchHHHHHHHHHHHHhcccCCccceEEEEEecCccc----------
Confidence 2233445566666776653 33445888999999999974 3 689999987621
Q ss_pred cccCCCCCCCccccccccchhHHHHHHHHHHHHhcCcEEEEEEecC
Q 001452 684 AEGRSNISSGEKETHKLLQPADKTLKAMAIEFAEYQVCVDVFITTQ 729 (1075)
Q Consensus 684 ~~~r~~~~~gt~ke~~ll~pa~~FYk~LA~~~~~~gIsVDlFl~s~ 729 (1075)
+.|+. .-.+|+.+.+++|.||++-|+-
T Consensus 120 -----------esede--------Lirlak~lkknnVAidii~fGE 146 (243)
T COG5148 120 -----------ESEDE--------LIRLAKQLKKNNVAIDIIFFGE 146 (243)
T ss_pred -----------ccHHH--------HHHHHHHHHhcCeeEEEEehhh
Confidence 11121 2368899999999999998864
No 72
>smart00187 INB Integrin beta subunits (N-terminal portion of extracellular region). Portion of beta integrins that lies N-terminal to their EGF-like repeats. Integrins are cell adhesion molecules that mediate cell-extracellular matrix and cell-cell interactions. They contain both alpha and beta subunits. Beta integrins are proposed to have a von Willebrand factor type-A "insert" or "I" -like domain (although this remains to be confirmed).
Probab=92.73 E-value=24 Score=42.23 Aligned_cols=267 Identities=14% Similarity=0.198 Sum_probs=135.5
Q ss_pred cEEEEEEEcchhHHhh-hHHHHHHHHHHHHHhcCCCCCCcEEEEEEe-CCeEEEEecC--CCCCCceEeecCCccccccC
Q 001452 534 AVFFFLIDVSMNALQT-GATAAACSAISQVISDLPEGPRTMVGIATF-DSTIHFYNLK--RALQQPLMLIVPDVEDVYTP 609 (1075)
Q Consensus 534 p~yvFvIDvS~~av~s-G~l~~v~~aI~~~L~~Lp~~~rt~VGiITF-Ds~VhfYnl~--~~l~qpqmlVvsDldd~FvP 609 (1075)
-=..|+.|+|+++... .-|+.+...|.+.|..+-.+ .|+||=+| |+.|.=|-.- ..+..|- ++..+.-.|
T Consensus 100 vDLYyLMDlS~SM~ddl~~lk~lg~~L~~~m~~it~n--~rlGfGsFVDK~v~P~~~t~p~~l~~PC----~~~~~~c~p 173 (423)
T smart00187 100 VDLYYLMDLSYSMKDDLDNLKSLGDDLAREMKGLTSN--FRLGFGSFVDKTVSPFVSTRPEKLENPC----PNYNLTCEP 173 (423)
T ss_pred cceEEEEeCCccHHHHHHHHHHHHHHHHHHHHhcccC--ceeeEEEeecCccCCcccCCHHHhcCCC----cCCCCCcCC
Confidence 3467899999987542 12445555566666655444 79999888 7766433211 1111110 010000011
Q ss_pred -CcccceeehHHhHHHHHHHHhhcCccccCCCCccchHHHHHHHHHHHHHhc-----CCEEEEEecCCCC--cCcccccc
Q 001452 610 -LQSDIIVPVSECRQHLELLLESIPSMFQNNRTAESAFGAAVKAAFLALKST-----GGKLLVFQSVLPS--VGIGALSA 681 (1075)
Q Consensus 610 -l~~~lLv~l~esr~~I~~lLd~Lp~~f~~~~~~~~~lG~AL~aA~~lL~~~-----GGkIivF~sg~Pt--~GpG~L~~ 681 (1075)
..-.-.++|.++.+.+.+.++... .-.+...+|..|-+-+++|+- -+.. .-||+||.+-... .|-|+|.-
T Consensus 174 ~f~f~~~L~LT~~~~~F~~~V~~~~-iSgN~D~PEgG~DAimQaaVC-~~~IGWR~~a~rllv~~TDa~fH~AGDGkLaG 251 (423)
T smart00187 174 PYGFKHVLSLTDDTDEFNEEVKKQR-ISGNLDAPEGGFDAIMQAAVC-TEQIGWREDARRLLVFSTDAGFHFAGDGKLAG 251 (423)
T ss_pred CcceeeeccCCCCHHHHHHHHhhce-eecCCcCCcccHHHHHHHHhh-ccccccCCCceEEEEEEcCCCccccCCcceee
Confidence 111123566666666666666543 223445677778777787742 2223 2489999988777 47777654
Q ss_pred ---cccccCCCCCCCccccccccchh----HHHHHHHHHHHHhcCcEEEEEEecCCccCccccccccccccceEE-EEcC
Q 001452 682 ---REAEGRSNISSGEKETHKLLQPA----DKTLKAMAIEFAEYQVCVDVFITTQTYVDIASISVIPKTTGGQVY-YYYP 753 (1075)
Q Consensus 682 ---re~~~r~~~~~gt~ke~~ll~pa----~~FYk~LA~~~~~~gIsVDlFl~s~~~~DlatL~~La~~TGG~v~-~Y~~ 753 (1075)
..|... ++..+.+ +..+ -.--.+|++++.+++|-+ ||+.+....++. ..|+++-.|... ....
T Consensus 252 Iv~PNDg~C---HL~~~g~---Yt~s~~~DYPSi~ql~~kL~e~nI~~-IFAVT~~~~~~Y--~~Ls~lipgs~vg~Ls~ 322 (423)
T smart00187 252 IVQPNDGQC---HLDNNGE---YTMSTTQDYPSIGQLNQKLAENNINP-IFAVTKKQVSLY--KELSALIPGSSVGVLSE 322 (423)
T ss_pred EecCCCCcc---eeCCCCC---cCccCcCCCCCHHHHHHHHHhcCceE-EEEEcccchhHH--HHHHHhcCcceeeeccc
Confidence 223221 1211101 1111 112578888899999865 777777655542 333333333322 2221
Q ss_pred CCcccchHHHHHHHHHhccCCccccceEEEE-eCCCceEEeeeCCcccC--CCCceeecCCCCCCeEEEEEEec
Q 001452 754 FSALSDPAKLYNDLRWNITRPQGFEAVMRVR-CSQGIQVQEYHGNFCKR--IPTDIDLPAIDCNKAIMVTLKHD 824 (1075)
Q Consensus 754 F~~~~d~~kL~~dL~r~Ltr~~g~~a~mrVR-~S~GL~V~~~~Gnf~~r--s~~~~~lp~id~dtSi~~el~~d 824 (1075)
.+.+.-+|..|-++.|. -+.+|+.. ..+||+++-.- ++-.. ....-...++.-.+.+.|++++.
T Consensus 323 --DSsNIv~LI~~aY~~i~----S~V~l~~~~~p~~v~~~y~s-~C~~g~~~~~~~~C~~v~iG~~V~F~v~vt 389 (423)
T smart00187 323 --DSSNVVELIKDAYNKIS----SRVELEDNSLPEGVSVTYTS-SCPGGVVGPGTRKCEGVKIGDTVSFEVTVT 389 (423)
T ss_pred --CcchHHHHHHHHHHhhc----eEEEEecCCCCCcEEEEEEe-eCCCCCcccCCcccCCcccCCEEEEEEEEE
Confidence 12344566666655543 23344444 25677765322 21111 01112345666667777777665
No 73
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=92.58 E-value=2 Score=48.83 Aligned_cols=148 Identities=18% Similarity=0.265 Sum_probs=91.5
Q ss_pred CcEEEEEEEcchhHHhhh----HHHHHHHHHHHHHhcCC-CCCCcEEEEEEeCCeEEEEecCCCCCCceEeecCCccccc
Q 001452 533 PAVFFFLIDVSMNALQTG----ATAAACSAISQVISDLP-EGPRTMVGIATFDSTIHFYNLKRALQQPLMLIVPDVEDVY 607 (1075)
Q Consensus 533 pp~yvFvIDvS~~av~sG----~l~~v~~aI~~~L~~Lp-~~~rt~VGiITFDs~VhfYnl~~~l~qpqmlVvsDldd~F 607 (1075)
-...+.+||+|..+.+.- .+..+++.+..-+.+.- .|+-.+||||+.- ++.. -.++|+.
T Consensus 60 iRhl~iviD~S~am~e~Df~P~r~a~~~K~le~Fv~eFFdQNPiSQigii~~k---------~g~A----~~lt~lt--- 123 (378)
T KOG2807|consen 60 IRHLYIVIDCSRAMEEKDFRPSRFANVIKYLEGFVPEFFDQNPISQIGIISIK---------DGKA----DRLTDLT--- 123 (378)
T ss_pred heeEEEEEEhhhhhhhccCCchHHHHHHHHHHHHHHHHhccCchhheeEEEEe---------cchh----hHHHHhc---
Confidence 346788999999877654 34556666666555443 3666789988642 2211 1122222
Q ss_pred cCCcccceeehHHh-HHHHHHHHhhcCccccCCCCccchHHHHHHHHHHHHHhcCC----EEEEEecCCCCcCccccccc
Q 001452 608 TPLQSDIIVPVSEC-RQHLELLLESIPSMFQNNRTAESAFGAAVKAAFLALKSTGG----KLLVFQSVLPSVGIGALSAR 682 (1075)
Q Consensus 608 vPl~~~lLv~l~es-r~~I~~lLd~Lp~~f~~~~~~~~~lG~AL~aA~~lL~~~GG----kIivF~sg~Pt~GpG~L~~r 682 (1075)
.+ +..|+.| ..+. .-..+..|-.||+.|...|++.-| .|++..+++.|.-||
T Consensus 124 ------------gnp~~hI~aL-~~~~-----~~~g~fSLqNaLe~a~~~Lk~~p~H~sREVLii~sslsT~DPg----- 180 (378)
T KOG2807|consen 124 ------------GNPRIHIHAL-KGLT-----ECSGDFSLQNALELAREVLKHMPGHVSREVLIIFSSLSTCDPG----- 180 (378)
T ss_pred ------------CCHHHHHHHH-hccc-----ccCCChHHHHHHHHHHHHhcCCCcccceEEEEEEeeecccCcc-----
Confidence 11 2233332 2222 124556788999999999998632 345555666665554
Q ss_pred ccccCCCCCCCccccccccchhHHHHHHHHHHHHhcCcEEEEEEecCCccCccccccccccccc
Q 001452 683 EAEGRSNISSGEKETHKLLQPADKTLKAMAIEFAEYQVCVDVFITTQTYVDIASISVIPKTTGG 746 (1075)
Q Consensus 683 e~~~r~~~~~gt~ke~~ll~pa~~FYk~LA~~~~~~gIsVDlFl~s~~~~DlatL~~La~~TGG 746 (1075)
+.|+ ..+.+.+..|-|.++-.+.+ +..-..||+.|||
T Consensus 181 -----------------------di~~-tI~~lk~~kIRvsvIgLsaE---v~icK~l~kaT~G 217 (378)
T KOG2807|consen 181 -----------------------DIYE-TIDKLKAYKIRVSVIGLSAE---VFICKELCKATGG 217 (378)
T ss_pred -----------------------cHHH-HHHHHHhhCeEEEEEeechh---HHHHHHHHHhhCC
Confidence 2333 34557888999999988754 6666899999999
No 74
>TIGR00627 tfb4 transcription factor tfb4. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=92.37 E-value=6.2 Score=44.79 Aligned_cols=95 Identities=15% Similarity=0.133 Sum_probs=62.6
Q ss_pred ccchHHHHHHHHHHHHHh----------cCCEEEEEecCCCCcCcccccccccccCCCCCCCccccccccchhHHHHHHH
Q 001452 642 AESAFGAAVKAAFLALKS----------TGGKLLVFQSVLPSVGIGALSAREAEGRSNISSGEKETHKLLQPADKTLKAM 711 (1075)
Q Consensus 642 ~~~~lG~AL~aA~~lL~~----------~GGkIivF~sg~Pt~GpG~L~~re~~~r~~~~~gt~ke~~ll~pa~~FYk~L 711 (1075)
.++.+..||..|+-.+.. ..+||+++..+. +... +---+-+.
T Consensus 117 ~~s~lagals~ALcyinr~~~~~~~~~~~~~RIlii~~s~-----------~~~~-----------------qYi~~mn~ 168 (279)
T TIGR00627 117 SRTVLAGALSDALGYINRSEQSETASEKLKSRILVISITP-----------DMAL-----------------QYIPLMNC 168 (279)
T ss_pred ccccchhHHHhhhhhhcccccccccCcCCcceEEEEECCC-----------CchH-----------------HHHHHHHH
Confidence 566788888888877732 257888887541 1100 11113477
Q ss_pred HHHHHhcCcEEEEEEecCCccCccccccccccccceEEEEcCCCcccchHHHHHHHHHhc
Q 001452 712 AIEFAEYQVCVDVFITTQTYVDIASISVIPKTTGGQVYYYYPFSALSDPAKLYNDLRWNI 771 (1075)
Q Consensus 712 A~~~~~~gIsVDlFl~s~~~~DlatL~~La~~TGG~v~~Y~~F~~~~d~~kL~~dL~r~L 771 (1075)
...|.+.+|.||++.++.+ -|+.-+..+++.|||......+ .+.|.+.|...+
T Consensus 169 Ifaaqk~~I~Idv~~L~~e-~~~~~lqQa~~~TgG~Y~~~~~------~~~L~q~L~~~~ 221 (279)
T TIGR00627 169 IFSAQKQNIPIDVVSIGGD-FTSGFLQQAADITGGSYLHVKK------PQGLLQYLMTNM 221 (279)
T ss_pred HHHHHHcCceEEEEEeCCc-cccHHHHHHHHHhCCEEeccCC------HhHHHHHHHHhc
Confidence 7889999999999988653 4678899999999994444433 344555554433
No 75
>PF03850 Tfb4: Transcription factor Tfb4; InterPro: IPR004600 Members of this family are part of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. The core-TFIIH basal transcription factor complex has six subunits, this is the p34 subunit.; GO: 0006281 DNA repair, 0006355 regulation of transcription, DNA-dependent, 0000439 core TFIIH complex
Probab=91.15 E-value=6.3 Score=44.69 Aligned_cols=91 Identities=19% Similarity=0.109 Sum_probs=60.6
Q ss_pred chHHHHHHHHHHHHHh-----------cCCEEEEEecCCCCcCcccccccccccCCCCCCCccccccccchhHHHHHHHH
Q 001452 644 SAFGAAVKAAFLALKS-----------TGGKLLVFQSVLPSVGIGALSAREAEGRSNISSGEKETHKLLQPADKTLKAMA 712 (1075)
Q Consensus 644 ~~lG~AL~aA~~lL~~-----------~GGkIivF~sg~Pt~GpG~L~~re~~~r~~~~~gt~ke~~ll~pa~~FYk~LA 712 (1075)
+.+..||..|+-.+.. ..+||+++.++-+ |.. . +---+-+..
T Consensus 116 s~LagALS~ALCyINR~~~~~~~~~~~~~~RILv~~s~s~-----------d~~-----------~-----QYi~~MN~i 168 (276)
T PF03850_consen 116 SLLAGALSMALCYINRISRESPSGGTSLKSRILVIVSGSP-----------DSS-----------S-----QYIPLMNCI 168 (276)
T ss_pred hhhHHHHHHHHHHHhhhhhcccCCCCCcCccEEEEEecCC-----------Ccc-----------H-----HHHHHHHHH
Confidence 6788888888877743 2368888633211 100 1 111134566
Q ss_pred HHHHhcCcEEEEEEecCCccCccccccccccccceEEEEcCCCcccchHHHHHHHHH
Q 001452 713 IEFAEYQVCVDVFITTQTYVDIASISVIPKTTGGQVYYYYPFSALSDPAKLYNDLRW 769 (1075)
Q Consensus 713 ~~~~~~gIsVDlFl~s~~~~DlatL~~La~~TGG~v~~Y~~F~~~~d~~kL~~dL~r 769 (1075)
-.|.+.+|.||++.+.. -|-.-|.+.+..|||.-+..+.. +.|...|-.
T Consensus 169 FaAqk~~v~IDv~~L~~--~~s~fLqQa~d~T~G~y~~~~~~------~~l~q~L~~ 217 (276)
T PF03850_consen 169 FAAQKQKVPIDVCKLGG--KDSTFLQQASDITGGIYLKVSKP------EGLLQYLLT 217 (276)
T ss_pred HHHhcCCceeEEEEecC--CchHHHHHHHHHhCceeeccCcc------ccHHHHHHH
Confidence 77889999999999987 56667899999999988877653 345555544
No 76
>COG2425 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=90.57 E-value=1.8 Score=51.65 Aligned_cols=147 Identities=18% Similarity=0.206 Sum_probs=90.0
Q ss_pred EEEEEEcchhHHhhhHHHHHHHHHHHHHhcCCCCCCcEEEEEEeCCeEEEEecCCCCCCceEeecCCccccccCCcccce
Q 001452 536 FFFLIDVSMNALQTGATAAACSAISQVISDLPEGPRTMVGIATFDSTIHFYNLKRALQQPLMLIVPDVEDVYTPLQSDII 615 (1075)
Q Consensus 536 yvFvIDvS~~av~sG~l~~v~~aI~~~L~~Lp~~~rt~VGiITFDs~VhfYnl~~~l~qpqmlVvsDldd~FvPl~~~lL 615 (1075)
++.|||.|.++ .|..+.+..++.-+|-.+.--.+.++.++.||+.++=|.+...
T Consensus 275 villlD~SGSM--~G~~e~~AKAvalAl~~~alaenR~~~~~lF~s~~~~~el~~k------------------------ 328 (437)
T COG2425 275 VILLLDKSGSM--SGFKEQWAKAVALALMRIALAENRDCYVILFDSEVIEYELYEK------------------------ 328 (437)
T ss_pred EEEEEeCCCCc--CCcHHHHHHHHHHHHHHHHHHhccceEEEEecccceeeeecCC------------------------
Confidence 55699999987 3555555555555554432223378999999984433332221
Q ss_pred eehHHhHHHHHHHHhhcCccccCCCCccchHHHHHHHHHHHHHh---cCCEEEEEecCCCCcCcccccccccccCCCCCC
Q 001452 616 VPVSECRQHLELLLESIPSMFQNNRTAESAFGAAVKAAFLALKS---TGGKLLVFQSVLPSVGIGALSAREAEGRSNISS 692 (1075)
Q Consensus 616 v~l~esr~~I~~lLd~Lp~~f~~~~~~~~~lG~AL~aA~~lL~~---~GGkIivF~sg~Pt~GpG~L~~re~~~r~~~~~ 692 (1075)
.-.++.+|+.|...|... +-+-.||..|++.++. .+++|++.|+|-.
T Consensus 329 ------~~~~~e~i~fL~~~f~GG----TD~~~~l~~al~~~k~~~~~~adiv~ITDg~~-------------------- 378 (437)
T COG2425 329 ------KIDIEELIEFLSYVFGGG----TDITKALRSALEDLKSRELFKADIVVITDGED-------------------- 378 (437)
T ss_pred ------ccCHHHHHHHHhhhcCCC----CChHHHHHHHHHHhhcccccCCCEEEEeccHh--------------------
Confidence 001344566665555433 5678889999999985 4688888876531
Q ss_pred CccccccccchhHHHHHHHHHHHHhcCcEEEEEEecCCc-cCccccccccccccceEEEEcC
Q 001452 693 GEKETHKLLQPADKTLKAMAIEFAEYQVCVDVFITTQTY-VDIASISVIPKTTGGQVYYYYP 753 (1075)
Q Consensus 693 gt~ke~~ll~pa~~FYk~LA~~~~~~gIsVDlFl~s~~~-~DlatL~~La~~TGG~v~~Y~~ 753 (1075)
.. .++|-.+..+...+.+.=|+-++++... -++..|+ ..+ +|.+++
T Consensus 379 ------~~---~~~~~~~v~e~~k~~~~rl~aV~I~~~~~~~l~~Is---d~~---i~~~~~ 425 (437)
T COG2425 379 ------ER---LDDFLRKVKELKKRRNARLHAVLIGGYGKPGLMRIS---DHI---IYRVEP 425 (437)
T ss_pred ------hh---hhHHHHHHHHHHHHhhceEEEEEecCCCCcccceee---eee---EEeeCc
Confidence 00 1466677777777777778877777654 4444444 443 666653
No 77
>PF00362 Integrin_beta: Integrin, beta chain; InterPro: IPR002369 Integrins are the major metazoan receptors for cell adhesion to extracellular matrix proteins and, in vertebrates, also play important roles in certain cell-cell adhesions, make transmembrane connections to the cytoskeleton and activate many intracellular signalling pathways [, ]. The integrin receptors are composed of alpha and beta subunit heterodimers. Each subunit crosses the membrane once, with most of the polypeptide residing in the extracellular space, and has two short cytoplasmic domains. Some members of this family have EGF repeats at the C terminus and also have a vWA domain inserted within the integrin domain at the N terminus. Most integrins recognise relatively short peptide motifs, and in general require an acidic amino acid to be present. Ligand specificity depends upon both the alpha and beta subunits []. There are at least 18 types of alpha and 8 types of beta subunits recognised in humans []. Each alpha subunit tends to associate only with one type of beta subunit, but there are exceptions to this rule []. Each association of alpha and beta subunits has its own binding specificity and signalling properties. Many integrins require activation on the cell surface before they can bind ligands. Integrins frequently intercommunicate, and binding at one integrin receptor activate or inhibit another. The structure of unliganded alphaV beta3 showed the molecule to be folded, with the head bent over towards the C termini of the legs which would normally be inserted into the membrane []. The head comprises a beta propeller domain at the end terminus of the alphaV subunit and an I/A domain inserted into a loop on the top of the hybrid domain in the beta subunit. The I/A domain consists of a Rossman fold with a core of beta parallel sheets surrounded by amphipathic alpha helices. Integrins are important therapeutic targets in conditions such as atherosclerosis, thrombosis, cancer and asthma []. At the N terminus of the beta subunit is a cysteine-containing domain reminiscent of that found in presenillins and semaphorins, which has hence been termed the PSI domain. C-terminal to the PSI domain is an A-domain, which has been predicted to adopt a Rossmann fold similar to that of the alpha subunit, but with additional loops between the second and third beta strands []. The murine gene Pactolus shares significant similarity with the beta subunit [], but lacks either one or both of the inserted loops. The C-terminal portion of the beta subunit extracellular domain contains an internally disulphide-bonded cysteine-rich region, while the intracellular tail contains putative sites of interaction with a variety of intracellular signalling and cytoskeletal proteins, such as focal adhesion kinase and alpha-actinin respectively []. Integrin cytoplasmic domains are normally less than 50 amino acids in length, with the beta-subunit sequences exhibiting greater homology to each other than the alpha-subunit sequences. This is consistent with current evidence that the beta subunit is the principal site for binding of cytoskeletal and signalling molecules, whereas the alpha subunit has a regulatory role. The first 20 amino acids of the beta-subunit cytoplasmic domain are also alpha helical, but the final 25 residues are disordered and, apart from a turn that follows a conserved NPxY motif, appear to lack defined structure, suggesting that this is adopted on effector binding. The two membrane-proximal helices mediate the link between the subunits via a series of hydrophobic and electrostatic contacts. This entry represents the N-terminal portion of the extracellular region of integrin beta subunits.; GO: 0005488 binding, 0007155 cell adhesion, 0007160 cell-matrix adhesion; PDB: 3VI4_B 3VI3_B 2VDQ_B 3IJE_B 1M1X_B 2VDR_B 3NIF_B 3NID_D 1TYE_F 2Q6W_F ....
Probab=90.22 E-value=19 Score=43.45 Aligned_cols=269 Identities=13% Similarity=0.205 Sum_probs=127.6
Q ss_pred cEEEEEEEcchhHHhh-hHHHHHHHHHHHHHhcCCCCCCcEEEEEEe-CCeEEEEecCCCCCCceEeecCCccccc----
Q 001452 534 AVFFFLIDVSMNALQT-GATAAACSAISQVISDLPEGPRTMVGIATF-DSTIHFYNLKRALQQPLMLIVPDVEDVY---- 607 (1075)
Q Consensus 534 p~yvFvIDvS~~av~s-G~l~~v~~aI~~~L~~Lp~~~rt~VGiITF-Ds~VhfYnl~~~l~qpqmlVvsDldd~F---- 607 (1075)
-=..|++|+|++.... .-|+.+-..|.+.|.++-.+ .|+||=+| |+.|.=|--. .|. .+.++.
T Consensus 103 vDLYyLmDlS~Sm~ddl~~l~~lg~~l~~~~~~it~~--~~~GfGsfvdK~~~P~~~~----~p~-----~l~~pc~~~~ 171 (426)
T PF00362_consen 103 VDLYYLMDLSYSMKDDLENLKSLGQDLAEEMRNITSN--FRLGFGSFVDKPVMPFVST----TPE-----KLKNPCPSKN 171 (426)
T ss_dssp EEEEEEEE-SGGGHHHHHHHCCCCHHHHHHHHTT-SS--EEEEEEEESSSSSTTTST-----SSH-----CHHSTSCCTT
T ss_pred eeEEEEeechhhhhhhHHHHHHHHHHHHHHHHhcCcc--ceEechhhcccccCCcccC----Chh-----hhcCcccccC
Confidence 3467899999986442 11334455677777777654 79999998 6655211100 000 111111
Q ss_pred ----cCCcccceeehHHhHHHHHHHHhhcCccccCCCCccchHHHHHHHHHHH--HH--hcCCEEEEEecCCCC--cCcc
Q 001452 608 ----TPLQSDIIVPVSECRQHLELLLESIPSMFQNNRTAESAFGAAVKAAFLA--LK--STGGKLLVFQSVLPS--VGIG 677 (1075)
Q Consensus 608 ----vPl~~~lLv~l~esr~~I~~lLd~Lp~~f~~~~~~~~~lG~AL~aA~~l--L~--~~GGkIivF~sg~Pt--~GpG 677 (1075)
-|..-.-.++|.++.+.+...+++.. +-.+...++..|-+-+++|+-- +. ...-||+||.+-..- .|-|
T Consensus 172 ~~c~~~~~f~~~l~Lt~~~~~F~~~v~~~~-is~n~D~PEgg~dal~Qa~vC~~~igWr~~a~~llv~~TD~~fH~agDg 250 (426)
T PF00362_consen 172 PNCQPPFSFRHVLSLTDDITEFNEEVNKQK-ISGNLDAPEGGLDALMQAAVCQEEIGWRNEARRLLVFSTDAGFHFAGDG 250 (426)
T ss_dssp S--B---SEEEEEEEES-HHHHHHHHHTS---B--SSSSBSHHHHHHHHHH-HHHHT--STSEEEEEEEESS-B--TTGG
T ss_pred CCCCCCeeeEEeecccchHHHHHHhhhhcc-ccCCCCCCccccchheeeeecccccCcccCceEEEEEEcCCcccccccc
Confidence 01111124567777777777777653 3345567888888888877541 11 123589999887765 5778
Q ss_pred cccccccccCCCCCCCcccccc-ccchhHHHHHHHHHHHHhcCcEEEEEEecCCccCcccccccccc-ccceEEEEcCCC
Q 001452 678 ALSAREAEGRSNISSGEKETHK-LLQPADKTLKAMAIEFAEYQVCVDVFITTQTYVDIASISVIPKT-TGGQVYYYYPFS 755 (1075)
Q Consensus 678 ~L~~re~~~r~~~~~gt~ke~~-ll~pa~~FYk~LA~~~~~~gIsVDlFl~s~~~~DlatL~~La~~-TGG~v~~Y~~F~ 755 (1075)
+|...-.......++..+.+.. -..-.-.-..+|.+.+.+++|.+ ||+......++. ..|+.+ .|+.+-....
T Consensus 251 ~l~gi~~pnd~~Chl~~~~~y~~~~~~DYPSv~ql~~~l~e~~i~~-IFAVt~~~~~~Y--~~L~~~i~~s~vg~L~~-- 325 (426)
T PF00362_consen 251 KLAGIVKPNDGKCHLDDNGMYTASTEQDYPSVGQLVRKLSENNINP-IFAVTKDVYSIY--EELSNLIPGSSVGELSS-- 325 (426)
T ss_dssp GGGT--S---SS--BSTTSBBGGGGCS----HHHHHHHHHHTTEEE-EEEEEGGGHHHH--HHHHHHSTTEEEEEEST--
T ss_pred ccceeeecCCCceEECCCCcccccccccCCCHHHHHHHHHHcCCEE-EEEEchhhhhHH--HHHhhcCCCceeccccc--
Confidence 7765432221111222221100 01113345778888888888765 677666544422 222222 2444445443
Q ss_pred cccchHHHHHHHHHhccCCccccceEEEE-eCCCceEEeeeCCcccCC--CCceeecCCCCCCeEEEEEEec
Q 001452 756 ALSDPAKLYNDLRWNITRPQGFEAVMRVR-CSQGIQVQEYHGNFCKRI--PTDIDLPAIDCNKAIMVTLKHD 824 (1075)
Q Consensus 756 ~~~d~~kL~~dL~r~Ltr~~g~~a~mrVR-~S~GL~V~~~~Gnf~~rs--~~~~~lp~id~dtSi~~el~~d 824 (1075)
.....-+|..+-++.|...+ .|+.. ..++++|+ |..++..+. ...-+..++.-.+++.|++++.
T Consensus 326 dSsNIv~LI~~aY~~i~s~V----~L~~~~~p~~v~v~-y~s~C~~~~~~~~~~~C~~V~iG~~V~F~VtVt 392 (426)
T PF00362_consen 326 DSSNIVQLIKEAYNKISSKV----ELKHDNAPDGVKVS-YTSNCPNGSTVPGTNECSNVKIGDTVTFNVTVT 392 (426)
T ss_dssp TSHTHHHHHHHHHHHHCTEE----EEEECS--TTEEEE-EEEEESSSEEEECCEEECSE-TT-EEEEEEEEE
T ss_pred CchhHHHHHHHHHHHHhheE----EEEecCCCCcEEEE-EEEEccCCcccCcCccccCEecCCEEEEEEEEE
Confidence 12234466666665554322 22211 23456663 333322211 1124455566666666666554
No 78
>KOG0443 consensus Actin regulatory proteins (gelsolin/villin family) [Cytoskeleton]
Probab=89.05 E-value=0.61 Score=58.24 Aligned_cols=60 Identities=15% Similarity=0.352 Sum_probs=42.9
Q ss_pred ceEEEeccCCCCCCCCCCCCcccCccccccCCcEEEEEcC-CeEEEEeCCCCCHHHHHHhhC
Q 001452 975 PRMVAIHDLDKGEDGSIIPPFLPLSSEHVSDEGIYLLENG-EDALIYIGSSVDSSILHQLFG 1035 (1075)
Q Consensus 975 PrL~~lh~l~~~d~~~~lP~~l~LS~e~L~~~GiYLLD~G-~~i~LwvG~~v~p~ll~~lFG 1035 (1075)
.+||.+.+-...--...+-.. +|+-+-|+.+++||||+| ..||||+|+.++.+--+..+.
T Consensus 255 ~kLYkVsd~~g~l~v~~va~~-~l~qdlLd~~dCYILD~g~~~IfVW~Gr~as~~ERkaAm~ 315 (827)
T KOG0443|consen 255 AKLYKVSDASGGLKVPVVADG-PLTKDLLDTEDCYILDCGGGEIFVWKGRQASLDERKAAMS 315 (827)
T ss_pred cEEEEEeccCCCccccccccc-hhhHHhhccCCeEEEecCCceEEEEeCCCCCHHHHHHHHH
Confidence 378888763211000001111 288889999999999999 999999999999987777775
No 79
>PF06707 DUF1194: Protein of unknown function (DUF1194); InterPro: IPR010607 This family consists of several hypothetical Rhizobiales specific proteins of around 270 residues in length. The function of this family is unknown.
Probab=87.44 E-value=12 Score=40.61 Aligned_cols=117 Identities=13% Similarity=0.087 Sum_probs=63.3
Q ss_pred HHHHHHHHhhcCccccCCCCccchHHHHHHHHHHHHHhc---CCEEEEEecC--CCCcCcccccccccccCCCCCCCccc
Q 001452 622 RQHLELLLESIPSMFQNNRTAESAFGAAVKAAFLALKST---GGKLLVFQSV--LPSVGIGALSAREAEGRSNISSGEKE 696 (1075)
Q Consensus 622 r~~I~~lLd~Lp~~f~~~~~~~~~lG~AL~aA~~lL~~~---GGkIivF~sg--~Pt~GpG~L~~re~~~r~~~~~gt~k 696 (1075)
-+.+-.-|...+..+ ... +++|.||..+..+|... +.|-++=.|| .-|.|+
T Consensus 77 a~a~A~~l~~~~r~~---~~~-Taig~Al~~a~~ll~~~~~~~~RrVIDvSGDG~~N~G~-------------------- 132 (205)
T PF06707_consen 77 AEAFAARLRAAPRRF---GGR-TAIGSALDFAAALLAQNPFECWRRVIDVSGDGPNNQGP-------------------- 132 (205)
T ss_pred HHHHHHHHHhCCCCC---CCC-chHHHHHHHHHHHHHhCCCCCceEEEEECCCCCCCCCC--------------------
Confidence 333444455554432 233 89999999999999864 4455544443 222221
Q ss_pred cccccchhHHHHHHHHHHHHhcCcEEEEEEecCCcc----CccccccccccccceEEEEcCCCcccchHHHHHHHHHhcc
Q 001452 697 THKLLQPADKTLKAMAIEFAEYQVCVDVFITTQTYV----DIASISVIPKTTGGQVYYYYPFSALSDPAKLYNDLRWNIT 772 (1075)
Q Consensus 697 e~~ll~pa~~FYk~LA~~~~~~gIsVDlFl~s~~~~----DlatL~~La~~TGG~v~~Y~~F~~~~d~~kL~~dL~r~Lt 772 (1075)
.|.+ ..-..+...||.||=+.+....- ||...-.=+-.+|---|.... .+.+.|.+-|+|-|.
T Consensus 133 -----~p~~----~ard~~~~~GitINgL~I~~~~~~~~~~L~~yy~~~VIgGpgAFV~~a----~~~~df~~AirrKL~ 199 (205)
T PF06707_consen 133 -----RPVT----SARDAAVAAGITINGLAILDDDPFGGADLDAYYRRCVIGGPGAFVETA----RGFEDFAEAIRRKLI 199 (205)
T ss_pred -----CccH----HHHHHHHHCCeEEeeeEecCCCCCccccHHHHHhhhcccCCCceEEEc----CCHHHHHHHHHHHHH
Confidence 1111 12233566899999998877655 555543333333322222222 234566666766666
Q ss_pred CCc
Q 001452 773 RPQ 775 (1075)
Q Consensus 773 r~~ 775 (1075)
||+
T Consensus 200 rEi 202 (205)
T PF06707_consen 200 REI 202 (205)
T ss_pred HHh
Confidence 654
No 80
>PRK10997 yieM hypothetical protein; Provisional
Probab=86.71 E-value=1.4 Score=53.46 Aligned_cols=149 Identities=11% Similarity=0.154 Sum_probs=85.2
Q ss_pred cEEEEEEEcchhHHhhhHHHHHHHHHHHHHhcCCCCCCcEEEEEEeCCeEEEEecCCCCCCceEeecCCccccccCCccc
Q 001452 534 AVFFFLIDVSMNALQTGATAAACSAISQVISDLPEGPRTMVGIATFDSTIHFYNLKRALQQPLMLIVPDVEDVYTPLQSD 613 (1075)
Q Consensus 534 p~yvFvIDvS~~av~sG~l~~v~~aI~~~L~~Lp~~~rt~VGiITFDs~VhfYnl~~~l~qpqmlVvsDldd~FvPl~~~ 613 (1075)
--+++|||+|.+.. |.-+....++..+|-.+....+.++++|.|++.++.|.+...
T Consensus 324 GpiII~VDtSGSM~--G~ke~~AkalAaAL~~iAl~q~dr~~li~Fs~~i~~~~l~~~---------------------- 379 (487)
T PRK10997 324 GPFIVCVDTSGSMG--GFNEQCAKAFCLALMRIALAENRRCYIMLFSTEVVTYELTGP---------------------- 379 (487)
T ss_pred CcEEEEEECCCCCC--CCHHHHHHHHHHHHHHHHHhcCCCEEEEEecCCceeeccCCc----------------------
Confidence 45889999999884 443344445555554433323368999999988776643221
Q ss_pred ceeehHHhHHHHHHHHhhcCccccCCCCccchHHHHHHHHHHHHHhc---CCEEEEEecCCCCcCcccccccccccCCCC
Q 001452 614 IIVPVSECRQHLELLLESIPSMFQNNRTAESAFGAAVKAAFLALKST---GGKLLVFQSVLPSVGIGALSAREAEGRSNI 690 (1075)
Q Consensus 614 lLv~l~esr~~I~~lLd~Lp~~f~~~~~~~~~lG~AL~aA~~lL~~~---GGkIivF~sg~Pt~GpG~L~~re~~~r~~~ 690 (1075)
..+..+..+|+. .+ ..++.+..||+.++..++.. .+-|+|+++....
T Consensus 380 ------~gl~~ll~fL~~---~f----~GGTDl~~aL~~al~~l~~~~~r~adIVVISDF~~~----------------- 429 (487)
T PRK10997 380 ------DGLEQAIRFLSQ---SF----RGGTDLAPCLRAIIEKMQGREWFDADAVVISDFIAQ----------------- 429 (487)
T ss_pred ------cCHHHHHHHHHH---hc----CCCCcHHHHHHHHHHHHcccccCCceEEEECCCCCC-----------------
Confidence 011122223332 22 44677889999998888753 4677777654310
Q ss_pred CCCccccccccchhHHHHHHHHHHHHhcCcEEEEEEecCCccCccccccccccccceEEEEcC
Q 001452 691 SSGEKETHKLLQPADKTLKAMAIEFAEYQVCVDVFITTQTYVDIASISVIPKTTGGQVYYYYP 753 (1075)
Q Consensus 691 ~~gt~ke~~ll~pa~~FYk~LA~~~~~~gIsVDlFl~s~~~~DlatL~~La~~TGG~v~~Y~~ 753 (1075)
...+++.+.+...-.+.+.-++..+++.. +-..+..++. +++.|+.
T Consensus 430 -----------~~~eel~~~L~~Lk~~~~~rf~~l~i~~~--~~p~l~~ifD----~~W~~d~ 475 (487)
T PRK10997 430 -----------RLPDELVAKVKELQRQHQHRFHAVAMSAH--GKPGIMRIFD----HIWRFDT 475 (487)
T ss_pred -----------CChHHHHHHHHHHHHhcCcEEEEEEeCCC--CCchHHHhcC----eeeEecC
Confidence 00134455554433447888888888642 2233444444 4677765
No 81
>KOG3768 consensus DEAD box RNA helicase [General function prediction only]
Probab=81.95 E-value=10 Score=46.26 Aligned_cols=32 Identities=28% Similarity=0.344 Sum_probs=25.5
Q ss_pred cEEEEEEEcchhHHh-----hhHHHHHHHHHHHHHhc
Q 001452 534 AVFFFLIDVSMNALQ-----TGATAAACSAISQVISD 565 (1075)
Q Consensus 534 p~yvFvIDvS~~av~-----sG~l~~v~~aI~~~L~~ 565 (1075)
|+|+|+||+|.+.-+ .-+|+.++.++..-|+.
T Consensus 2 pi~lFllDTS~SM~qrah~~~tylD~AKgaVEtFiK~ 38 (888)
T KOG3768|consen 2 PIFLFLLDTSGSMSQRAHPQFTYLDLAKGAVETFIKQ 38 (888)
T ss_pred ceEEEEEecccchhhhccCCchhhHHHHHHHHHHHHH
Confidence 689999999998754 34788888888888874
No 82
>KOG2353 consensus L-type voltage-dependent Ca2+ channel, alpha2/delta subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=81.91 E-value=24 Score=47.03 Aligned_cols=113 Identities=18% Similarity=0.268 Sum_probs=72.6
Q ss_pred EEEEeccccccCCCCCcEEEEEEEcchhHHhhhHHHHHHHHHHHHHhcCCCCCCcEEEEEEeCCeEEEEecCCCCCCceE
Q 001452 518 VEFVATKEYMVRDPMPAVFFFLIDVSMNALQTGATAAACSAISQVISDLPEGPRTMVGIATFDSTIHFYNLKRALQQPLM 597 (1075)
Q Consensus 518 VEfvap~eY~~r~p~pp~yvFvIDvS~~av~sG~l~~v~~aI~~~L~~Lp~~~rt~VGiITFDs~VhfYnl~~~l~qpqm 597 (1075)
+|.--.+-|+..+..+--.+|++|+|.+.-. -.++.++..+.++|+.|.++ -.|-++||++.++.-
T Consensus 210 ~D~R~r~Wyi~aAt~pKdiviLlD~SgSm~g-~~~~lak~tv~~iLdtLs~~--Dfvni~tf~~~~~~v----------- 275 (1104)
T KOG2353|consen 210 YDCRNRSWYIQAATSPKDIVILLDVSGSMSG-LRLDLAKQTVNEILDTLSDN--DFVNILTFNSEVNPV----------- 275 (1104)
T ss_pred eecccccccccccCCccceEEEEeccccccc-hhhHHHHHHHHHHHHhcccC--CeEEEEeeccccCcc-----------
Confidence 3333344566677788899999999997532 24667788888899988876 589999999877532
Q ss_pred eecCCccccccCCcccceeehHHhHHHHHHHHhhcCccccCCCCccchHHHHHHHHHHHHHh
Q 001452 598 LIVPDVEDVYTPLQSDIIVPVSECRQHLELLLESIPSMFQNNRTAESAFGAAVKAAFLALKS 659 (1075)
Q Consensus 598 lVvsDldd~FvPl~~~lLv~l~esr~~I~~lLd~Lp~~f~~~~~~~~~lG~AL~aA~~lL~~ 659 (1075)
+++.. ..|+----.+++.|.++++.|. .+ ...-+-.|+..|+++|..
T Consensus 276 --~pc~~-------~~lvqAt~~nk~~~~~~i~~l~--~k----~~a~~~~~~e~aF~lL~~ 322 (1104)
T KOG2353|consen 276 --SPCFN-------GTLVQATMRNKKVFKEAIETLD--AK----GIANYTAALEYAFSLLRD 322 (1104)
T ss_pred --ccccc-------CceeecchHHHHHHHHHHhhhc--cc----cccchhhhHHHHHHHHHH
Confidence 22211 1222222345666677777765 11 122356678888888864
No 83
>KOG2487 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB4 [Transcription; Replication, recombination and repair]
Probab=80.05 E-value=22 Score=39.95 Aligned_cols=54 Identities=13% Similarity=-0.024 Sum_probs=40.3
Q ss_pred HHHHHHHHHhcCcEEEEEEecCCccCccccccccccccceEEEEcCCCcccchHHHHHHHHHh
Q 001452 708 LKAMAIEFAEYQVCVDVFITTQTYVDIASISVIPKTTGGQVYYYYPFSALSDPAKLYNDLRWN 770 (1075)
Q Consensus 708 Yk~LA~~~~~~gIsVDlFl~s~~~~DlatL~~La~~TGG~v~~Y~~F~~~~d~~kL~~dL~r~ 770 (1075)
|-+.--.+.+.+|.||++.+..+ -..|.+.|..|||...+.+.- +.|.+.|.+.
T Consensus 185 ~MNciFaAqKq~I~Idv~~l~~~---s~~LqQa~D~TGG~YL~v~~~------~gLLqyLlt~ 238 (314)
T KOG2487|consen 185 YMNCIFAAQKQNIPIDVVSLGGD---SGFLQQACDITGGDYLHVEKP------DGLLQYLLTL 238 (314)
T ss_pred HHHHHHHHHhcCceeEEEEecCC---chHHHHHHhhcCCeeEecCCc------chHHHHHHHH
Confidence 45556678889999999999876 456789999999998887752 3455555544
No 84
>COG4867 Uncharacterized protein with a von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=77.93 E-value=11 Score=44.43 Aligned_cols=161 Identities=16% Similarity=0.184 Sum_probs=96.9
Q ss_pred CcEEEEEEEcchhHHhhhHHH---HHHHHHHHHHhc-CCCCCCcEEEEEEeCCeEEEEecCCCCCCceEeecCCcccccc
Q 001452 533 PAVFFFLIDVSMNALQTGATA---AACSAISQVISD-LPEGPRTMVGIATFDSTIHFYNLKRALQQPLMLIVPDVEDVYT 608 (1075)
Q Consensus 533 pp~yvFvIDvS~~av~sG~l~---~v~~aI~~~L~~-Lp~~~rt~VGiITFDs~VhfYnl~~~l~qpqmlVvsDldd~Fv 608 (1075)
-.+.+.++|+|++.+-.|.+- .+.-+|...+.. .+.+ -|.||+|...- +.+
T Consensus 463 ~aAvallvDtS~SM~~eGRw~PmKQtALALhHLv~TrfrGD---~l~~i~Fgr~A------------~~v---------- 517 (652)
T COG4867 463 QAAVALLVDTSFSMVMEGRWLPMKQTALALHHLVCTRFRGD---ALQIIAFGRYA------------RTV---------- 517 (652)
T ss_pred ccceeeeeeccHHHHHhccCCchHHHHHHHHHHHHhcCCCc---ceEEEeccchh------------ccc----------
Confidence 346789999999998878432 222234444432 3333 57888875321 111
Q ss_pred CCcccceeehHHhHHHHHHHHhhcCccccCCCCccchHHHHHHHHHHHHHhcC---CEEEEEecCCCCc----Ccccccc
Q 001452 609 PLQSDIIVPVSECRQHLELLLESIPSMFQNNRTAESAFGAAVKAAFLALKSTG---GKLLVFQSVLPSV----GIGALSA 681 (1075)
Q Consensus 609 Pl~~~lLv~l~esr~~I~~lLd~Lp~~f~~~~~~~~~lG~AL~aA~~lL~~~G---GkIivF~sg~Pt~----GpG~L~~ 681 (1075)
+++| |..++.+. ...+.+--||..|-.+|+... -.|++.+.|-||. |-|.+.
T Consensus 518 --------~v~e--------Lt~l~~v~----eqgTNlhhaL~LA~r~l~Rh~~~~~~il~vTDGePtAhle~~DG~~~- 576 (652)
T COG4867 518 --------TAAE--------LTGLAGVY----EQGTNLHHALALAGRHLRRHAGAQPVVLVVTDGEPTAHLEDGDGTSV- 576 (652)
T ss_pred --------CHHH--------HhcCCCcc----ccccchHHHHHHHHHHHHhCcccCceEEEEeCCCccccccCCCCceE-
Confidence 1111 23333322 223456678888888888643 4788999999983 222211
Q ss_pred cccccCCCCCCCccccccccchhHHHHHHHHHHHHhcCcEEEEEEecCCccCccccccccccccceEEEEc
Q 001452 682 REAEGRSNISSGEKETHKLLQPADKTLKAMAIEFAEYQVCVDVFITTQTYVDIASISVIPKTTGGQVYYYY 752 (1075)
Q Consensus 682 re~~~r~~~~~gt~ke~~ll~pa~~FYk~LA~~~~~~gIsVDlFl~s~~~~DlatL~~La~~TGG~v~~Y~ 752 (1075)
...|++|-+. +++ ..+++ ..|.+.|+-|++|....+.-=+.-|..+++.|+|++|+-+
T Consensus 577 -------~f~yp~DP~t-~~~----Tvr~~-d~~~r~G~q~t~FrLg~DpgL~~Fv~qva~rv~G~vv~pd 634 (652)
T COG4867 577 -------FFDYPPDPRT-IAH----TVRGF-DDMARLGAQVTIFRLGSDPGLARFIDQVARRVQGRVVVPD 634 (652)
T ss_pred -------ecCCCCChhH-HHH----HHHHH-HHHHhccceeeEEeecCCHhHHHHHHHHHHHhCCeEEecC
Confidence 1145555432 221 22333 3589999999999998875444456889999999998743
No 85
>PF05762 VWA_CoxE: VWA domain containing CoxE-like protein; InterPro: IPR008912 This group of proteins contains a VWA type domain and the function of this family is unknown. It is found as part of a CO oxidising (Cox) system operon in several bacteria [].
Probab=72.89 E-value=27 Score=38.11 Aligned_cols=102 Identities=12% Similarity=0.146 Sum_probs=53.3
Q ss_pred CCCc-EEEEEEEcchhHHhhhHHHHHHHHHHHHHhcCCCCCCcEEEEEEeCCeEEEEecCCCCCCceEeecCCccccccC
Q 001452 531 PMPA-VFFFLIDVSMNALQTGATAAACSAISQVISDLPEGPRTMVGIATFDSTIHFYNLKRALQQPLMLIVPDVEDVYTP 609 (1075)
Q Consensus 531 p~pp-~yvFvIDvS~~av~sG~l~~v~~aI~~~L~~Lp~~~rt~VGiITFDs~VhfYnl~~~l~qpqmlVvsDldd~FvP 609 (1075)
+..+ .+|+|+|||.+... +...++..+..+.+.. .+|.++.|++.|+ . +.+.+-.
T Consensus 54 ~~~~~~lvvl~DvSGSM~~--~s~~~l~~~~~l~~~~-----~~~~~f~F~~~l~--~---------------vT~~l~~ 109 (222)
T PF05762_consen 54 PRKPRRLVVLCDVSGSMAG--YSEFMLAFLYALQRQF-----RRVRVFVFSTRLT--E---------------VTPLLRR 109 (222)
T ss_pred cCCCccEEEEEeCCCChHH--HHHHHHHHHHHHHHhC-----CCEEEEEEeeehh--h---------------hhhhhcc
Confidence 4445 89999999998754 3333333333333332 2567777775542 1 1111100
Q ss_pred CcccceeehHHhHHHHHHHHhhcCccccCCCCccchHHHHHHHHHHHHHhc---CCEEEEEecC
Q 001452 610 LQSDIIVPVSECRQHLELLLESIPSMFQNNRTAESAFGAAVKAAFLALKST---GGKLLVFQSV 670 (1075)
Q Consensus 610 l~~~lLv~l~esr~~I~~lLd~Lp~~f~~~~~~~~~lG~AL~aA~~lL~~~---GGkIivF~sg 670 (1075)
. +-.+.|..+..... .-..++.+|.||..+.+.+... +-.|+++.++
T Consensus 110 --~-------~~~~~l~~~~~~~~-----~~~GgTdi~~aL~~~~~~~~~~~~~~t~vvIiSDg 159 (222)
T PF05762_consen 110 --R-------DPEEALARLSALVQ-----SFGGGTDIGQALREFLRQYARPDLRRTTVVIISDG 159 (222)
T ss_pred --C-------CHHHHHHHHHhhcc-----CCCCccHHHHHHHHHHHHhhcccccCcEEEEEecc
Confidence 0 01122233222222 1346778899999888887632 3556666665
No 86
>TIGR01053 LSD1 zinc finger domain, LSD1 subclass. This model describes a putative zinc finger domain found in three closely spaced copies in Arabidopsis protein LSD1 and in two copies in other proteins from the same species. The motif resembles CxxCRxxLMYxxGASxVxCxxC
Probab=71.68 E-value=3.5 Score=31.42 Aligned_cols=30 Identities=20% Similarity=0.476 Sum_probs=23.6
Q ss_pred cccCCCCceecCceEEEecCCeEEecCCCCCCCC
Q 001452 457 VRCSRCKAYINPFMKFIDQGRRFICSLCGFTDET 490 (1075)
Q Consensus 457 vRC~rCrAYiNPf~~f~~~G~~W~Cn~C~~~N~v 490 (1075)
++|..|++.+-- -.+-++|+|.+|...|.+
T Consensus 2 ~~C~~C~t~L~y----P~gA~~vrCs~C~~vt~v 31 (31)
T TIGR01053 2 VVCGGCRTLLMY----PRGASSVRCALCQTVNLV 31 (31)
T ss_pred cCcCCCCcEeec----CCCCCeEECCCCCeEecC
Confidence 579999997642 357789999999988754
No 87
>PF11265 Med25_VWA: Mediator complex subunit 25 von Willebrand factor type A; InterPro: IPR021419 The overall function of the full-length Med25 is efficiently to coordinate the transcriptional activation of RAR/RXR (retinoic acid receptor/retinoic X receptor) in higher eukaryotic cells. Human Med25 consists of several domains with different binding properties, the N-terminal, VWA domain which is this one, an SD2 domain from residues 229-381, a PTOV(B) or ACID domain from 395-545, an SD2 domain from residues 564-645 and a C-terminal NR box-containing domain (646-650) from 646-747. This VWA or von Willebrand factor type A domain when bound to RAR and the histone acetyltransferase CBP is responsible for recruiting Med1 to the rest of the Mediator complex [].
Probab=71.56 E-value=1e+02 Score=34.08 Aligned_cols=102 Identities=15% Similarity=0.243 Sum_probs=60.0
Q ss_pred HHHHHHHhhcCccccCCCCccch-HHHHHHHHHHHHHh------c-C-----CEEEEEecCCCCcCcccccccccccCCC
Q 001452 623 QHLELLLESIPSMFQNNRTAESA-FGAAVKAAFLALKS------T-G-----GKLLVFQSVLPSVGIGALSAREAEGRSN 689 (1075)
Q Consensus 623 ~~I~~lLd~Lp~~f~~~~~~~~~-lG~AL~aA~~lL~~------~-G-----GkIivF~sg~Pt~GpG~L~~re~~~r~~ 689 (1075)
+.+.+.|++|. |....-.+.| +..+|.+|+.++.. . + -+.|+...+.|.. +...+.
T Consensus 90 ~~fl~~L~~I~--f~GGG~e~~a~iaEGLa~AL~~fd~~~~~r~~~~~~~~~khcILI~nSpP~~----~p~~~~----- 158 (226)
T PF11265_consen 90 QKFLQWLDAIQ--FSGGGFESCAAIAEGLAEALQCFDDFKQMRQQQQQTDVQKHCILICNSPPYR----LPVNEC----- 158 (226)
T ss_pred HHHHHHHHccC--cCCCCcccchhHHHHHHHHHHHhcchhhhccccCcccccceEEEEeCCCCcc----ccccCC-----
Confidence 34555677775 3333333344 77788888887762 1 1 2455556666642 111111
Q ss_pred CCCCccccccccchhHHHHHHHHHHHHhcCcEEEEEEecCCccCccccccccccccceEEE
Q 001452 690 ISSGEKETHKLLQPADKTLKAMAIEFAEYQVCVDVFITTQTYVDIASISVIPKTTGGQVYY 750 (1075)
Q Consensus 690 ~~~gt~ke~~ll~pa~~FYk~LA~~~~~~gIsVDlFl~s~~~~DlatL~~La~~TGG~v~~ 750 (1075)
.++ ....++++|..+.+++|.+.++.- . -+..|..|-+..+|....
T Consensus 159 --------~~~---~~~~~d~la~~~~~~~I~LSiisP-r---klP~l~~Lfeka~~~~~~ 204 (226)
T PF11265_consen 159 --------PQY---SGKTCDQLAVLISERNISLSIISP-R---KLPSLRSLFEKAKGNPRA 204 (226)
T ss_pred --------Ccc---cCCCHHHHHHHHHhcCceEEEEcC-c---cCHHHHHHHHhcCCCccc
Confidence 111 124578999999999999998853 2 255666776676666655
No 88
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=71.27 E-value=3 Score=51.28 Aligned_cols=45 Identities=24% Similarity=0.315 Sum_probs=34.7
Q ss_pred eEEEeccCCCCCCCCCCCCcccCccccccCCcEEEEEcCCeEEEEeCCC
Q 001452 976 RMVAIHDLDKGEDGSIIPPFLPLSSEHVSDEGIYLLENGEDALIYIGSS 1024 (1075)
Q Consensus 976 rL~~lh~l~~~d~~~~lP~~l~LS~e~L~~~GiYLLD~G~~i~LwvG~~ 1024 (1075)
|||.+|... ..+--++++|+..+|++.-+||||-|.+||||-|..
T Consensus 623 RlYrv~~~g----~~i~lEPVpl~~tSLDPRf~FlLD~G~~IyiW~G~~ 667 (1255)
T KOG0444|consen 623 RLYRVGVNG----TAIELEPVPLSVTSLDPRFCFLLDAGETIYIWSGYK 667 (1255)
T ss_pred hhheecccc----ceeEeeccCccccccCcceEEEEeCCceEEEEeccc
Confidence 556666431 112235789999999999999999999999999965
No 89
>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]
Probab=68.31 E-value=2.4 Score=36.89 Aligned_cols=31 Identities=29% Similarity=0.864 Sum_probs=22.4
Q ss_pred eeccCCCCCCcccCCCCceecCceEEEecCCeEEecCCCCC
Q 001452 447 QIVDFGDMGPVRCSRCKAYINPFMKFIDQGRRFICSLCGFT 487 (1075)
Q Consensus 447 Pvvd~g~~~pvRC~rCrAYiNPf~~f~~~G~~W~Cn~C~~~ 487 (1075)
+.-+.|+..|.||.+||- .|..|+|.-||+.
T Consensus 29 ~CPnCGe~~I~Rc~~CRk----------~g~~Y~Cp~CGF~ 59 (61)
T COG2888 29 PCPNCGEVEIYRCAKCRK----------LGNPYRCPKCGFE 59 (61)
T ss_pred eCCCCCceeeehhhhHHH----------cCCceECCCcCcc
Confidence 344667777899999986 3556788888864
No 90
>COG5242 TFB4 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB4 [Transcription / DNA replication, recombination, and repair]
Probab=68.06 E-value=56 Score=35.84 Aligned_cols=176 Identities=15% Similarity=0.252 Sum_probs=91.5
Q ss_pred CcEEEEEEEcchhH----HhhhHHHHHHHHHHHHHhc-CCCCCCcEEEEE-EeCCeEEEEecCCCCCCceEeecCCccc-
Q 001452 533 PAVFFFLIDVSMNA----LQTGATAAACSAISQVISD-LPEGPRTMVGIA-TFDSTIHFYNLKRALQQPLMLIVPDVED- 605 (1075)
Q Consensus 533 pp~yvFvIDvS~~a----v~sG~l~~v~~aI~~~L~~-Lp~~~rt~VGiI-TFDs~VhfYnl~~~l~qpqmlVvsDldd- 605 (1075)
|...+.+||..-.. -+.|-..-+++.|.--|.. |..+.+-||++| .|+..+.+.--++.. .+-+++.|.
T Consensus 20 pslL~viid~~p~~W~~~~ek~~~~kvl~di~VFLNAhlaf~~~NrVaVva~~s~~~~yLypss~s----~~k~se~e~t 95 (296)
T COG5242 20 PSLLFVIIDLEPENWELTTEKGSRDKVLNDIVVFLNAHLAFSRNNRVAVVAGYSQGKTYLYPSSES----ALKASESENT 95 (296)
T ss_pred CceEEEEEecChhhcccccccccHHHHHHHHHHHHHHHHhhccCCeEEEEEeccCceEEeccCcch----hhhhhcccCc
Confidence 44566677865543 2344455555555544442 333333577776 566655433222221 122334332
Q ss_pred ----cccCCcccceeehHHhHHHHHHHHhhcCccccC--CCCccchHHHHHHHHHHHHHh------cCCEEEEEecCCCC
Q 001452 606 ----VYTPLQSDIIVPVSECRQHLELLLESIPSMFQN--NRTAESAFGAAVKAAFLALKS------TGGKLLVFQSVLPS 673 (1075)
Q Consensus 606 ----~FvPl~~~lLv~l~esr~~I~~lLd~Lp~~f~~--~~~~~~~lG~AL~aA~~lL~~------~GGkIivF~sg~Pt 673 (1075)
+|.- +-++. +.+|+.|-++++. ......-+|-|+.+++.+..+ .-.||++|+.+
T Consensus 96 r~sd~yrr-----fr~vd------e~~i~eiyrl~e~~~k~sqr~~v~gams~glay~n~~~~e~slkSriliftls--- 161 (296)
T COG5242 96 RNSDMYRR-----FRNVD------ETDITEIYRLIEHPHKNSQRYDVGGAMSLGLAYCNHRDEETSLKSRILIFTLS--- 161 (296)
T ss_pred cchhhhhh-----hcccc------hHHHHHHHHHHhCcccccceeehhhhhhhhHHHHhhhcccccccceEEEEEec---
Confidence 2211 11111 2233333333322 223445678888888887753 35899999862
Q ss_pred cCcccccccccccCCCCCCCccccccccchhHHHHHHHHHHHHhcCcEEEEEEecCCccCccccccccccccceEEEEcC
Q 001452 674 VGIGALSAREAEGRSNISSGEKETHKLLQPADKTLKAMAIEFAEYQVCVDVFITTQTYVDIASISVIPKTTGGQVYYYYP 753 (1075)
Q Consensus 674 ~GpG~L~~re~~~r~~~~~gt~ke~~ll~pa~~FYk~LA~~~~~~gIsVDlFl~s~~~~DlatL~~La~~TGG~v~~Y~~ 753 (1075)
| ||..- + +.| |-+-.-.+.+.+|-||+|-+... --.|.+.+..|||.....++
T Consensus 162 -G------~d~~~------------q-Yip----~mnCiF~Aqk~~ipI~v~~i~g~---s~fl~Q~~daTgG~Yl~ve~ 214 (296)
T COG5242 162 -G------RDRKD------------Q-YIP----YMNCIFAAQKFGIPISVFSIFGN---SKFLLQCCDATGGDYLTVED 214 (296)
T ss_pred -C------chhhh------------h-hch----hhhheeehhhcCCceEEEEecCc---cHHHHHHhhccCCeeEeecC
Confidence 1 22110 0 011 22223345577999999977655 34577889999998777665
No 91
>PF09967 DUF2201: VWA-like domain (DUF2201); InterPro: IPR018698 This family of various hypothetical bacterial proteins has no known function.
Probab=66.83 E-value=9.9 Score=37.93 Aligned_cols=93 Identities=15% Similarity=0.171 Sum_probs=59.1
Q ss_pred EEEEEcchhHHhhhHHHHHHHHHHHHHhcCCCCCCcEEEEEEeCCeEEEEecCCCCCCceEeecCCccccccCCccccee
Q 001452 537 FFLIDVSMNALQTGATAAACSAISQVISDLPEGPRTMVGIATFDSTIHFYNLKRALQQPLMLIVPDVEDVYTPLQSDIIV 616 (1075)
Q Consensus 537 vFvIDvS~~av~sG~l~~v~~aI~~~L~~Lp~~~rt~VGiITFDs~VhfYnl~~~l~qpqmlVvsDldd~FvPl~~~lLv 616 (1075)
+++||+|.+.-+ ..|+.++..|..+++... .+|-+|.||..|+--. .+.+.++.
T Consensus 2 ~vaiDtSGSis~-~~l~~fl~ev~~i~~~~~----~~v~vi~~D~~v~~~~-----------~~~~~~~~---------- 55 (126)
T PF09967_consen 2 VVAIDTSGSISD-EELRRFLSEVAGILRRFP----AEVHVIQFDAEVQDVQ-----------VFRSLEDE---------- 55 (126)
T ss_pred EEEEECCCCCCH-HHHHHHHHHHHHHHHhCC----CCEEEEEECCEeeeee-----------EEeccccc----------
Confidence 689999997643 357777888888887762 4699999999986321 11111100
Q ss_pred ehHHhHHHHHHHHhhcCccccCCCCccchHHHHHHHHHHHHHhcCCEEEEEecCCC
Q 001452 617 PVSECRQHLELLLESIPSMFQNNRTAESAFGAAVKAAFLALKSTGGKLLVFQSVLP 672 (1075)
Q Consensus 617 ~l~esr~~I~~lLd~Lp~~f~~~~~~~~~lG~AL~aA~~lL~~~GGkIivF~sg~P 672 (1075)
+..+ .-....++++.++++.+.+.. ....-|++||++-.
T Consensus 56 ------------~~~~----~~~GgGGTdf~pvf~~~~~~~-~~~~~vi~fTDg~~ 94 (126)
T PF09967_consen 56 ------------LRDI----KLKGGGGTDFRPVFEYLEENR-PRPSVVIYFTDGEG 94 (126)
T ss_pred ------------cccc----ccCCCCCCcchHHHHHHHhcC-CCCCEEEEEeCCCC
Confidence 0111 113467788888888876643 34566778998654
No 92
>KOG1226 consensus Integrin beta subunit (N-terminal portion of extracellular region) [Signal transduction mechanisms; Extracellular structures]
Probab=65.00 E-value=2e+02 Score=37.02 Aligned_cols=303 Identities=13% Similarity=0.187 Sum_probs=134.0
Q ss_pred EEEEEEEcchhHHhh-hHHHHHHHHHHHHHhcCCCCCCcEEEEEEe-CCeEEEEecCC--CCCCceEeecCCccccccCC
Q 001452 535 VFFFLIDVSMNALQT-GATAAACSAISQVISDLPEGPRTMVGIATF-DSTIHFYNLKR--ALQQPLMLIVPDVEDVYTPL 610 (1075)
Q Consensus 535 ~yvFvIDvS~~av~s-G~l~~v~~aI~~~L~~Lp~~~rt~VGiITF-Ds~VhfYnl~~--~l~qpqmlVvsDldd~FvPl 610 (1075)
-..+++|+|+++... .-|+.+=..|.+.|..|-.+ -||||=.| |++|.=|-... .+..| -++..+-..|.
T Consensus 134 DLYyLMDlS~SM~DDl~~l~~LG~~L~~~m~~lT~n--frlGFGSFVDK~v~P~i~~~pekl~np----c~~~~~C~ppf 207 (783)
T KOG1226|consen 134 DLYYLMDLSYSMKDDLENLKSLGTDLAREMRKLTSN--FRLGFGSFVDKTVSPYISTTPEKLRNP----CPNYKNCAPPF 207 (783)
T ss_pred eEEEEeecchhhhhhHHHHHHHHHHHHHHHHHHhcc--CCccccchhccccccccccCcHHhcCC----CCCcccCCCCc
Confidence 356789999987542 12455556667777777655 68999888 77775443211 11111 01111101111
Q ss_pred cccceeehHHhHHHHHHHHhhcCccccCCCCccchHHHHHHHHHHHHHhc-----CCEEEEEecCCCC--cCcccccccc
Q 001452 611 QSDIIVPVSECRQHLELLLESIPSMFQNNRTAESAFGAAVKAAFLALKST-----GGKLLVFQSVLPS--VGIGALSARE 683 (1075)
Q Consensus 611 ~~~lLv~l~esr~~I~~lLd~Lp~~f~~~~~~~~~lG~AL~aA~~lL~~~-----GGkIivF~sg~Pt--~GpG~L~~re 683 (1075)
.-.-.+.|.+..+.+++.+++=. +-.+-..++-.|-+.|++|+- =+.. --|++||.+-.=. .|-|+|.---
T Consensus 208 gfkhvLsLT~~~~~F~~~V~~q~-ISgNlDaPEGGfDAimQaavC-~~~IGWR~~a~~lLVF~td~~~H~a~DgkLaGiv 285 (783)
T KOG1226|consen 208 GFKHVLSLTNDAEEFNEEVGKQR-ISGNLDAPEGGFDAIMQAAVC-TEKIGWRNDATRLLVFSTDAGFHFAGDGKLAGIV 285 (783)
T ss_pred ccceeeecCCChHHHHHHHhhce-eccCCCCCCchHHHHHhhhhc-cccccccccceeEEEEEcCcceeeecccceeeEe
Confidence 11123455555555554444321 223334566667777777652 2222 3689999865433 4666655422
Q ss_pred cccCCCCCCCccccccccc-hhHHHHHHHHHHHHhcCcEEEEEEecCCccCc-cccccccc-cccceEEEEcCCCcccch
Q 001452 684 AEGRSNISSGEKETHKLLQ-PADKTLKAMAIEFAEYQVCVDVFITTQTYVDI-ASISVIPK-TTGGQVYYYYPFSALSDP 760 (1075)
Q Consensus 684 ~~~r~~~~~gt~ke~~ll~-pa~~FYk~LA~~~~~~gIsVDlFl~s~~~~Dl-atL~~La~-~TGG~v~~Y~~F~~~~d~ 760 (1075)
..+...-+++.+.+.+... -.-.--..|+.+.++++|-+ +|......+++ ..+..|.. .+-|.+- . .+.+.
T Consensus 286 ~pnDG~CHL~~~g~Yt~S~~qdyPSia~l~~kl~~~ni~~-IFAVt~~~~~~Y~~l~~lip~s~vg~l~---~--DSsNi 359 (783)
T KOG1226|consen 286 QPNDGQCHLDKNGEYTQSTTQDYPSIAQLAQKLADNNINT-IFAVTKNSQSLYEELSNLIPGSAVGVLS---E--DSSNI 359 (783)
T ss_pred cCCCCccccCCCCccceecCCCCCcHHHHHHHHhhhcchh-HHHHhhhhhhHHHhhhhhCCcccccccc---c--chhhH
Confidence 1111111222221110000 00011234555566666554 33333332222 22222222 1112221 1 11233
Q ss_pred HHHHHHHHHhccCCccccceEEE-EeCCCceEEeeeCCcccC--CCC-ceeecCCCCCCeEEEEEEecCCCCCCCceEEE
Q 001452 761 AKLYNDLRWNITRPQGFEAVMRV-RCSQGIQVQEYHGNFCKR--IPT-DIDLPAIDCNKAIMVTLKHDDKLQDGSECAFQ 836 (1075)
Q Consensus 761 ~kL~~dL~r~Ltr~~g~~a~mrV-R~S~GL~V~~~~Gnf~~r--s~~-~~~lp~id~dtSi~~el~~d~~L~~~~~~~fQ 836 (1075)
..|..+=++-|. -+..|++ -.+.||++. |.+..... ... .-.-.+|....++.|+.+++.+.-......-=
T Consensus 360 ~qLI~~ay~~l~----s~v~l~~~~~p~gl~~~-y~s~C~~g~~~~~~~~~c~~i~~gd~v~f~v~~~~~~C~~~~~~~~ 434 (783)
T KOG1226|consen 360 VQLIIEAYNSLS----SKVILEDENQPEGLSLS-YTSSCSNGVSFPGKRRKCSGITIGDEVTFEVSVTAKKCPPEDQKGS 434 (783)
T ss_pred HHHHHHHHHhcc----ceEEEeecCCCCceeEE-EeeecCCCCccCCccCCCCCcccCceeEEEEecccccCCCccccce
Confidence 344444333332 3344444 345566664 22222111 111 11345677778888888877653221110011
Q ss_pred EEEEEEecCCcEEEEEEecc
Q 001452 837 CALLYTTVYGQRRIRVTTLS 856 (1075)
Q Consensus 837 ~AlLYTt~~GeRrIRV~Tl~ 856 (1075)
+.+.=...++.-.++|+..+
T Consensus 435 ~~i~pvgf~e~l~v~v~~~C 454 (783)
T KOG1226|consen 435 FIIRPVGFTETLEVIVQYNC 454 (783)
T ss_pred EEEccCCCCcceEEEeeccc
Confidence 22222233445566666665
No 93
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=64.69 E-value=5.1 Score=49.44 Aligned_cols=61 Identities=16% Similarity=0.302 Sum_probs=42.1
Q ss_pred cccceEEEeccCCCCCCCCCCCC-----cccCccccccCCcEEEEEcCCeEEEEeCCCCCH-------HHHHHhhC
Q 001452 972 FVYPRMVAIHDLDKGEDGSIIPP-----FLPLSSEHVSDEGIYLLENGEDALIYIGSSVDS-------SILHQLFG 1035 (1075)
Q Consensus 972 ~lYPrL~~lh~l~~~d~~~~lP~-----~l~LS~e~L~~~GiYLLD~G~~i~LwvG~~v~p-------~ll~~lFG 1035 (1075)
-..|+||.+.--- |...+|+ ...|-.+-|.+.++|+||+...+|||+|+..+. .+.++||+
T Consensus 731 p~qpkLYkV~lGm---GyLELPQvel~P~~~l~q~lL~sk~VyiLDc~sDiF~W~GkKs~RLvraAa~KL~~EL~~ 803 (1255)
T KOG0444|consen 731 PEQPKLYKVNLGM---GYLELPQVELLPKGILKQDLLGSKGVYILDCNSDIFLWIGKKSNRLVRAAAQKLVVELHQ 803 (1255)
T ss_pred CCCcceEEEcccc---ceeecchhhhchhhHHHHHhhcCCeEEEEecCCceEEEecccchHHHHHHHHHHHHHHHh
Confidence 4568888875311 1112332 234566678999999999999999999998664 45667776
No 94
>PF10058 DUF2296: Predicted integral membrane metal-binding protein (DUF2296); InterPro: IPR019273 This domain, found mainly in the eukaryotic lunapark proteins, has no known function [].
Probab=62.96 E-value=4.8 Score=34.56 Aligned_cols=33 Identities=21% Similarity=0.377 Sum_probs=23.6
Q ss_pred CcccCCCCceecCceEEEecCCeEEecCCCCCC
Q 001452 456 PVRCSRCKAYINPFMKFIDQGRRFICSLCGFTD 488 (1075)
Q Consensus 456 pvRC~rCrAYiNPf~~f~~~G~~W~Cn~C~~~N 488 (1075)
.+-|++|+.--.-+-+-....-+|+|..|++.|
T Consensus 22 aLIC~~C~~hNGla~~~~~~~i~y~C~~Cg~~N 54 (54)
T PF10058_consen 22 ALICSKCFSHNGLAPKEEFEEIQYRCPYCGALN 54 (54)
T ss_pred eEECcccchhhcccccccCCceEEEcCCCCCcC
Confidence 677999998644442333344589999999987
No 95
>PHA03378 EBNA-3B; Provisional
Probab=57.53 E-value=2.6e+02 Score=35.42 Aligned_cols=8 Identities=25% Similarity=0.472 Sum_probs=3.2
Q ss_pred CCCCCCCC
Q 001452 21 YNPNLQQN 28 (1075)
Q Consensus 21 ~~~~~~~~ 28 (1075)
++|+..+.
T Consensus 689 ~ap~~~~p 696 (991)
T PHA03378 689 WAPGTMQP 696 (991)
T ss_pred cCccccCC
Confidence 33444433
No 96
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=56.03 E-value=8.7 Score=31.53 Aligned_cols=30 Identities=23% Similarity=0.668 Sum_probs=20.8
Q ss_pred CcccCCCCceecCceEEEecCCeEEecCCCCCCC
Q 001452 456 PVRCSRCKAYINPFMKFIDQGRRFICSLCGFTDE 489 (1075)
Q Consensus 456 pvRC~rCrAYiNPf~~f~~~G~~W~Cn~C~~~N~ 489 (1075)
..+|.+|++-+- +++....++|+.||....
T Consensus 3 ~y~C~~CG~~~~----~~~~~~~~~Cp~CG~~~~ 32 (46)
T PRK00398 3 EYKCARCGREVE----LDEYGTGVRCPYCGYRIL 32 (46)
T ss_pred EEECCCCCCEEE----ECCCCCceECCCCCCeEE
Confidence 468999999542 333333799999996543
No 97
>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional
Probab=49.30 E-value=7.4 Score=33.97 Aligned_cols=28 Identities=29% Similarity=0.885 Sum_probs=18.7
Q ss_pred cCCCCCCcccCCCCceecCceEEEecCCeEEecCCCCC
Q 001452 450 DFGDMGPVRCSRCKAYINPFMKFIDQGRRFICSLCGFT 487 (1075)
Q Consensus 450 d~g~~~pvRC~rCrAYiNPf~~f~~~G~~W~Cn~C~~~ 487 (1075)
+.|+..|.||.+||-. +..|+|.-||+.
T Consensus 30 nCG~~~I~RC~~CRk~----------~~~Y~CP~CGF~ 57 (59)
T PRK14890 30 NCGEVIIYRCEKCRKQ----------SNPYTCPKCGFE 57 (59)
T ss_pred CCCCeeEeechhHHhc----------CCceECCCCCCc
Confidence 4455557888888763 345688888764
No 98
>PRK12860 transcriptional activator FlhC; Provisional
Probab=48.85 E-value=8.8 Score=41.08 Aligned_cols=30 Identities=30% Similarity=0.790 Sum_probs=21.9
Q ss_pred CCCCcccCCCCc-eecCceEEEecCCeEEecCCC
Q 001452 453 DMGPVRCSRCKA-YINPFMKFIDQGRRFICSLCG 485 (1075)
Q Consensus 453 ~~~pvRC~rCrA-YiNPf~~f~~~G~~W~Cn~C~ 485 (1075)
.-...+|++|++ ||-. ..+....|+|.||.
T Consensus 131 ~L~l~~C~~Cgg~fv~~---~~e~~~~f~CplC~ 161 (189)
T PRK12860 131 MLQLARCCRCGGKFVTH---AHDLRHNFVCGLCQ 161 (189)
T ss_pred CeeeccCCCCCCCeecc---ccccCCCCcCCCCC
Confidence 446899999997 5532 22445679999999
No 99
>PRK03954 ribonuclease P protein component 4; Validated
Probab=48.08 E-value=11 Score=37.62 Aligned_cols=35 Identities=23% Similarity=0.616 Sum_probs=24.6
Q ss_pred cccCCCCceecC----ceEEEecC---CeEEecCCCCCCCCC
Q 001452 457 VRCSRCKAYINP----FMKFIDQG---RRFICSLCGFTDETP 491 (1075)
Q Consensus 457 vRC~rCrAYiNP----f~~f~~~G---~~W~Cn~C~~~N~vP 491 (1075)
--|++|.+|+=| -+.+..++ -.++|..||+..-+|
T Consensus 65 ~~CK~C~t~LiPG~n~~vRi~~~~~~~vvitCl~CG~~kR~P 106 (121)
T PRK03954 65 RYCKRCHSFLVPGVNARVRLRQKRMPHVVITCLECGHIMRYP 106 (121)
T ss_pred HHhhcCCCeeecCCceEEEEecCCcceEEEECccCCCEEeec
Confidence 459999999865 33344332 234999999988776
No 100
>PF09082 DUF1922: Domain of unknown function (DUF1922); InterPro: IPR015166 Members of this family consist of a beta-sheet region followed by an alpha-helix and an unstructured C terminus. The beta-sheet region contains a CXCX...XCXC sequence with Cys residues located in two proximal loops and pointing towards each other. This precise function of this set of bacterial proteins is, as yet, unknown []. ; PDB: 1GH9_A.
Probab=47.52 E-value=8.2 Score=34.65 Aligned_cols=30 Identities=27% Similarity=0.598 Sum_probs=20.0
Q ss_pred CcccCCCCceecCceEEEecCCeEEecCCCCCCCCC
Q 001452 456 PVRCSRCKAYINPFMKFIDQGRRFICSLCGFTDETP 491 (1075)
Q Consensus 456 pvRC~rCrAYiNPf~~f~~~G~~W~Cn~C~~~N~vP 491 (1075)
|.|| +|+.|+ --.++.+.-+| .||....|-
T Consensus 3 ifrC-~Cgr~l----ya~e~~kTkkC-~CG~~l~vk 32 (68)
T PF09082_consen 3 IFRC-DCGRYL----YAKEGAKTKKC-VCGKTLKVK 32 (68)
T ss_dssp EEEE-TTS--E----EEETT-SEEEE-TTTEEEE--
T ss_pred EEEe-cCCCEE----EecCCcceeEe-cCCCeeeee
Confidence 6899 799976 24566778899 999887764
No 101
>PRK12722 transcriptional activator FlhC; Provisional
Probab=44.35 E-value=10 Score=40.53 Aligned_cols=31 Identities=23% Similarity=0.562 Sum_probs=22.1
Q ss_pred CCCCcccCCCCc-eecCceEEEecCCeEEecCCCC
Q 001452 453 DMGPVRCSRCKA-YINPFMKFIDQGRRFICSLCGF 486 (1075)
Q Consensus 453 ~~~pvRC~rCrA-YiNPf~~f~~~G~~W~Cn~C~~ 486 (1075)
.-...+|++|++ ||-.. .+-...|+|.||+-
T Consensus 131 ~L~l~~C~~Cgg~fv~~~---~e~~~~f~CplC~~ 162 (187)
T PRK12722 131 MLQLSSCNCCGGHFVTHA---HDPVGSFVCGLCQP 162 (187)
T ss_pred cEeeccCCCCCCCeeccc---cccCCCCcCCCCCC
Confidence 345789999997 55322 24456799999986
No 102
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=42.81 E-value=12 Score=36.96 Aligned_cols=34 Identities=18% Similarity=0.390 Sum_probs=27.4
Q ss_pred CcccCCCCceecCceEEEe-cCCeEEecCCCCCCC
Q 001452 456 PVRCSRCKAYINPFMKFID-QGRRFICSLCGFTDE 489 (1075)
Q Consensus 456 pvRC~rCrAYiNPf~~f~~-~G~~W~Cn~C~~~N~ 489 (1075)
-..|..|+-+++--|.+.. +...|+|++|....+
T Consensus 71 ~~~C~~C~~~VC~~C~~~~~~~~~WlC~vC~k~re 105 (118)
T PF02318_consen 71 GRVCVDCKHRVCKKCGVYSKKEPIWLCKVCQKQRE 105 (118)
T ss_dssp CEEETTTTEEEETTSEEETSSSCCEEEHHHHHHHH
T ss_pred CCcCCcCCccccCccCCcCCCCCCEEChhhHHHHH
Confidence 3889999999999998874 467899999976443
No 103
>PF11781 RRN7: RNA polymerase I-specific transcription initiation factor Rrn7; InterPro: IPR021752 Rrn7 is a transcription binding factor that associates strongly with both Rrn6 and Rrn11 to form a complex which itself binds the TATA-binding protein and is required for transcription by the core domain of the RNA PolI promoter [],[].
Probab=39.03 E-value=21 Score=28.17 Aligned_cols=28 Identities=25% Similarity=0.634 Sum_probs=20.5
Q ss_pred CcccCCCCceecCceEEEecCCeEEecCCCCCC
Q 001452 456 PVRCSRCKAYINPFMKFIDQGRRFICSLCGFTD 488 (1075)
Q Consensus 456 pvRC~rCrAYiNPf~~f~~~G~~W~Cn~C~~~N 488 (1075)
..+|..|+++ +...++ | .|.|.-||+.-
T Consensus 8 ~~~C~~C~~~---~~~~~d-G-~~yC~~cG~~~ 35 (36)
T PF11781_consen 8 NEPCPVCGSR---WFYSDD-G-FYYCDRCGHQS 35 (36)
T ss_pred CCcCCCCCCe---EeEccC-C-EEEhhhCceEc
Confidence 4679999998 443343 3 79999999753
No 104
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=38.89 E-value=16 Score=28.82 Aligned_cols=33 Identities=27% Similarity=0.627 Sum_probs=23.1
Q ss_pred CcccCCCCceec-CceEEEecCCeEEecCCCCCC
Q 001452 456 PVRCSRCKAYIN-PFMKFIDQGRRFICSLCGFTD 488 (1075)
Q Consensus 456 pvRC~rCrAYiN-Pf~~f~~~G~~W~Cn~C~~~N 488 (1075)
.++|.+|++-.+ +-.++...|++.+|.-|++.-
T Consensus 2 ~i~CP~C~~~f~v~~~~l~~~~~~vrC~~C~~~f 35 (37)
T PF13719_consen 2 IITCPNCQTRFRVPDDKLPAGGRKVRCPKCGHVF 35 (37)
T ss_pred EEECCCCCceEEcCHHHcccCCcEEECCCCCcEe
Confidence 468888888655 333455668889999998753
No 105
>smart00661 RPOL9 RNA polymerase subunit 9.
Probab=38.85 E-value=20 Score=29.75 Aligned_cols=32 Identities=28% Similarity=0.742 Sum_probs=20.9
Q ss_pred ccCCCCceecCceEEEecCCeEEecCCCCCCCCC
Q 001452 458 RCSRCKAYINPFMKFIDQGRRFICSLCGFTDETP 491 (1075)
Q Consensus 458 RC~rCrAYiNPf~~f~~~G~~W~Cn~C~~~N~vP 491 (1075)
.|.+|+..+-+- -.++..+|+|.-|++.-.+.
T Consensus 2 FCp~Cg~~l~~~--~~~~~~~~vC~~Cg~~~~~~ 33 (52)
T smart00661 2 FCPKCGNMLIPK--EGKEKRRFVCRKCGYEEPIE 33 (52)
T ss_pred CCCCCCCccccc--cCCCCCEEECCcCCCeEECC
Confidence 589999866322 12223489999999765543
No 106
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=37.73 E-value=95 Score=40.03 Aligned_cols=33 Identities=18% Similarity=0.680 Sum_probs=23.2
Q ss_pred CcccCCCCceecCceEEEecCCeEEecCCCCCCCCCc
Q 001452 456 PVRCSRCKAYINPFMKFIDQGRRFICSLCGFTDETPR 492 (1075)
Q Consensus 456 pvRC~rCrAYiNPf~~f~~~G~~W~Cn~C~~~N~vP~ 492 (1075)
+.+|.+|-.++ ++-...+.-+|..||+.-.+|.
T Consensus 444 v~~Cp~Cd~~l----t~H~~~~~L~CH~Cg~~~~~p~ 476 (730)
T COG1198 444 IAECPNCDSPL----TLHKATGQLRCHYCGYQEPIPQ 476 (730)
T ss_pred cccCCCCCcce----EEecCCCeeEeCCCCCCCCCCC
Confidence 45666665553 4445667899999999977764
No 107
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=36.11 E-value=1.4e+03 Score=31.77 Aligned_cols=7 Identities=57% Similarity=0.975 Sum_probs=3.1
Q ss_pred CCCCCCC
Q 001452 44 PVSMPNS 50 (1075)
Q Consensus 44 ~~~~~~~ 50 (1075)
|..+|++
T Consensus 1663 p~~~p~s 1669 (1958)
T KOG0391|consen 1663 PAHTPNS 1669 (1958)
T ss_pred CCCCCcc
Confidence 3444444
No 108
>PF08271 TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013137 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIB (TFIIB). In eukaryotes the initiation of transcription of protein encoding genes by the polymerase II complexe (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least seven different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, and -IIH []. TFIIB and TFIID are responsible for promoter recognition and interaction with pol II; together with Pol II, they form a minimal initiation complex capable of transcription under certain conditions. The TATA box of a Pol II promoter is bound in the initiation complex by the TBP subunit of TFIID, which bends the DNA around the C-terminal domain of TFIIB whereas the N-terminal zinc finger of TFIIB interacts with Pol II [, ]. The TFIIB zinc finger adopts a zinc ribbon fold characterised by two beta-hairpins forming two structurally similar zinc-binding sub-sites []. The zinc finger contacts the rbp1 subunit of Pol II through its dock domain, a conserved region of about 70 amino acids located close to the polymerase active site []. In the Pol II complex this surface is located near the RNA exit groove. Interestingly this sequence is best conserved in the three polymerases that utilise a TFIIB-like general transcription factor (Pol II, Pol III, and archaeal RNA polymerase) but not in Pol I []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1VD4_A 1PFT_A 3K1F_M 3K7A_M 1RO4_A 1RLY_A 1DL6_A.
Probab=35.80 E-value=39 Score=27.29 Aligned_cols=27 Identities=22% Similarity=0.730 Sum_probs=19.9
Q ss_pred ccCCCCceecCceEEEecCCeEEecCCCCC
Q 001452 458 RCSRCKAYINPFMKFIDQGRRFICSLCGFT 487 (1075)
Q Consensus 458 RC~rCrAYiNPf~~f~~~G~~W~Cn~C~~~ 487 (1075)
+|.+|++.- ..++.....++|.-||..
T Consensus 2 ~Cp~Cg~~~---~~~D~~~g~~vC~~CG~V 28 (43)
T PF08271_consen 2 KCPNCGSKE---IVFDPERGELVCPNCGLV 28 (43)
T ss_dssp SBTTTSSSE---EEEETTTTEEEETTT-BB
T ss_pred CCcCCcCCc---eEEcCCCCeEECCCCCCE
Confidence 699999843 456666668999999965
No 109
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=35.79 E-value=20 Score=29.05 Aligned_cols=29 Identities=21% Similarity=0.535 Sum_probs=24.5
Q ss_pred cccCCCCceecCceEEEecCCeEEecCCCC
Q 001452 457 VRCSRCKAYINPFMKFIDQGRRFICSLCGF 486 (1075)
Q Consensus 457 vRC~rCrAYiNPf~~f~~~G~~W~Cn~C~~ 486 (1075)
-||.+|+....-+..+.+ .....|.-||.
T Consensus 6 y~C~~Cg~~fe~~~~~~~-~~~~~CP~Cg~ 34 (42)
T PF09723_consen 6 YRCEECGHEFEVLQSISE-DDPVPCPECGS 34 (42)
T ss_pred EEeCCCCCEEEEEEEcCC-CCCCcCCCCCC
Confidence 589999988888877777 56799999997
No 110
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=35.77 E-value=17 Score=28.52 Aligned_cols=32 Identities=31% Similarity=0.651 Sum_probs=20.4
Q ss_pred CcccCCCCceec-CceEEEecCCeEEecCCCCC
Q 001452 456 PVRCSRCKAYIN-PFMKFIDQGRRFICSLCGFT 487 (1075)
Q Consensus 456 pvRC~rCrAYiN-Pf~~f~~~G~~W~Cn~C~~~ 487 (1075)
.++|.+|++-.+ +=-++-..|++.+|.-|++.
T Consensus 2 ~i~Cp~C~~~y~i~d~~ip~~g~~v~C~~C~~~ 34 (36)
T PF13717_consen 2 IITCPNCQAKYEIDDEKIPPKGRKVRCSKCGHV 34 (36)
T ss_pred EEECCCCCCEEeCCHHHCCCCCcEEECCCCCCE
Confidence 367888887443 22223456778888888864
No 111
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=34.67 E-value=23 Score=34.91 Aligned_cols=28 Identities=14% Similarity=0.256 Sum_probs=20.2
Q ss_pred CCcccCCCCceecCceEEEecCCeEEecCCCCCC
Q 001452 455 GPVRCSRCKAYINPFMKFIDQGRRFICSLCGFTD 488 (1075)
Q Consensus 455 ~pvRC~rCrAYiNPf~~f~~~G~~W~Cn~C~~~N 488 (1075)
.-.||..|+.. |......|.|.-||..+
T Consensus 69 ~~~~C~~Cg~~------~~~~~~~~~CP~Cgs~~ 96 (113)
T PRK12380 69 AQAWCWDCSQV------VEIHQHDAQCPHCHGER 96 (113)
T ss_pred cEEEcccCCCE------EecCCcCccCcCCCCCC
Confidence 36899999953 33334568899999664
No 112
>PF02905 EBV-NA1: Epstein Barr virus nuclear antigen-1, DNA-binding domain; InterPro: IPR004186 The Epstein-Barr virus (strain GD1) nuclear antigen 1 (EBNA1) binds to and activates DNA replication from the latent origin of replication. The crystal structure of the DNA-binding and dimerization domains were solved [], and it was found that EBNA1 appears to bind DNA via two independent regions, the core and the flanking DNA-binding domains. This DNA-binding domain has a ferredoxin-like fold.; GO: 0003677 DNA binding, 0003688 DNA replication origin binding, 0006260 DNA replication, 0006275 regulation of DNA replication, 0045893 positive regulation of transcription, DNA-dependent, 0042025 host cell nucleus; PDB: 1B3T_B 1VHI_B.
Probab=34.49 E-value=53 Score=32.89 Aligned_cols=33 Identities=24% Similarity=0.330 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHhcCCC-CCCcEEEEEEeCCeEE
Q 001452 552 TAAACSAISQVISDLPE-GPRTMVGIATFDSTIH 584 (1075)
Q Consensus 552 l~~v~~aI~~~L~~Lp~-~~rt~VGiITFDs~Vh 584 (1075)
.++++++|++.+..-|. ..+++|-+++||+.|.
T Consensus 112 Ae~vkDAi~Dyi~T~P~PT~~~~Vt~~~Fd~~V~ 145 (146)
T PF02905_consen 112 AECVKDAIRDYIMTRPQPTCNTQVTVCSFDDGVM 145 (146)
T ss_dssp HHHHHHHHHHHHCTS-TTGGGEEEEEEEEEEEE-
T ss_pred HHHHHHHHHHHhcCCCCCCcceEEEEEeCCCCCc
Confidence 36889999998877664 2458999999998764
No 113
>PF10122 Mu-like_Com: Mu-like prophage protein Com; InterPro: IPR019294 Members of this entry belong to the Com family of proteins that act as translational regulators of mom [, ].
Probab=34.15 E-value=15 Score=31.27 Aligned_cols=34 Identities=18% Similarity=0.515 Sum_probs=24.0
Q ss_pred CcccCCCCceecCceEEEecCCeEEecCCCCCCCCC
Q 001452 456 PVRCSRCKAYINPFMKFIDQGRRFICSLCGFTDETP 491 (1075)
Q Consensus 456 pvRC~rCrAYiNPf~~f~~~G~~W~Cn~C~~~N~vP 491 (1075)
-+||.+|+=.+----.+.+- .-+|.=|++.|.+-
T Consensus 4 eiRC~~CnklLa~~g~~~~l--eIKCpRC~tiN~~~ 37 (51)
T PF10122_consen 4 EIRCGHCNKLLAKAGEVIEL--EIKCPRCKTINHVR 37 (51)
T ss_pred ceeccchhHHHhhhcCccEE--EEECCCCCccceEe
Confidence 48999998766543222222 58999999999874
No 114
>KOG0445 consensus Actin regulatory protein supervillin (gelsolin/villin family) [Cytoskeleton]
Probab=33.46 E-value=54 Score=41.09 Aligned_cols=43 Identities=9% Similarity=0.264 Sum_probs=36.3
Q ss_pred cCccccccCCcEEEEEcCCeEEEEeCCCCCH-------HHHHHhhCCCCC
Q 001452 997 PLSSEHVSDEGIYLLENGEDALIYIGSSVDS-------SILHQLFGISSV 1039 (1075)
Q Consensus 997 ~LS~e~L~~~GiYLLD~G~~i~LwvG~~v~p-------~ll~~lFGv~s~ 1039 (1075)
.++.+-|++..+++.|-|..+|+|-|+.++. ++.+.|||.+.-
T Consensus 362 ipk~~~l~p~eVLvFDFGSEvYVW~Gk~~~~~~~~~A~~lAk~l~~~dy~ 411 (919)
T KOG0445|consen 362 IPKCSLLQPKEVLVFDFGSEVYVWHGKEVTLAQRKIAFQLAKHLWNFDYE 411 (919)
T ss_pred cccccccCcceEEEEecCceEEEEcCccCchHHHHHHHHHHHHHhCCCcc
Confidence 3466788999999999999999999999876 688999995543
No 115
>PF09779 Ima1_N: Ima1 N-terminal domain; InterPro: IPR018617 Members of this family of uncharacterised novel proteins have no known function.
Probab=33.00 E-value=28 Score=35.13 Aligned_cols=33 Identities=15% Similarity=0.371 Sum_probs=23.6
Q ss_pred cccCCCCceecCceEEEecCCeEEecCCCCCCCCC
Q 001452 457 VRCSRCKAYINPFMKFIDQGRRFICSLCGFTDETP 491 (1075)
Q Consensus 457 vRC~rCrAYiNPf~~f~~~G~~W~Cn~C~~~N~vP 491 (1075)
++|--|+..- .+.+....+.|.|.-|+..|-+.
T Consensus 1 v~C~fC~~~s--~~~~~~~~~~w~C~~C~q~N~f~ 33 (131)
T PF09779_consen 1 VNCWFCGQNS--KVPYDNRNSNWTCPHCEQYNGFD 33 (131)
T ss_pred CeeccCCCCC--CCCCCCCCCeeECCCCCCccCcc
Confidence 5788888742 33344555569999999999764
No 116
>TIGR02605 CxxC_CxxC_SSSS putative regulatory protein, FmdB family. This model represents a region of about 50 amino acids found in a number of small proteins in a wide range of bacteria. The region begins usually with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One member of this family is has been noted as a putative regulatory protein, designated FmdB (PubMed:8841393). Most members of this family have a C-terminal region containing highly degenerate sequence, such as SSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV in Mycobacterium tuberculosis and VAVGGSAPAPSPAPRAGGGGGGCCGGGCCG in Streptomyces avermitilis. These low complexity regions, which are not included in the model, resemble low-complexity C-terminal regions of some heterocycle-containing bacteriocin precursors.
Probab=32.78 E-value=22 Score=29.63 Aligned_cols=31 Identities=26% Similarity=0.529 Sum_probs=22.4
Q ss_pred cccCCCCceecCceEEEecCCeEEecCCCCCC
Q 001452 457 VRCSRCKAYINPFMKFIDQGRRFICSLCGFTD 488 (1075)
Q Consensus 457 vRC~rCrAYiNPf~~f~~~G~~W~Cn~C~~~N 488 (1075)
-||.+|+....-+..+.+ .....|..||..+
T Consensus 6 y~C~~Cg~~fe~~~~~~~-~~~~~CP~Cg~~~ 36 (52)
T TIGR02605 6 YRCTACGHRFEVLQKMSD-DPLATCPECGGEK 36 (52)
T ss_pred EEeCCCCCEeEEEEecCC-CCCCCCCCCCCCc
Confidence 589999986666655544 4468899999743
No 117
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.36 E-value=23 Score=35.78 Aligned_cols=32 Identities=22% Similarity=0.568 Sum_probs=22.1
Q ss_pred CCcccCCCCceecCceEEEecCCeEEecCCCCCCCC
Q 001452 455 GPVRCSRCKAYINPFMKFIDQGRRFICSLCGFTDET 490 (1075)
Q Consensus 455 ~pvRC~rCrAYiNPf~~f~~~G~~W~Cn~C~~~N~v 490 (1075)
.+--|.||++-+. ...+.-.|+||+|...-++
T Consensus 88 q~r~CARCGGrv~----lrsNKv~wvcnlc~k~q~i 119 (169)
T KOG3799|consen 88 QTRFCARCGGRVS----LRSNKVMWVCNLCRKQQEI 119 (169)
T ss_pred hhhHHHhcCCeee----eccCceEEeccCCcHHHHH
Confidence 4566788888654 3345668999999875543
No 118
>TIGR00100 hypA hydrogenase nickel insertion protein HypA. In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.
Probab=31.48 E-value=28 Score=34.35 Aligned_cols=27 Identities=19% Similarity=0.498 Sum_probs=20.0
Q ss_pred CcccCCCCceecCceEEEecCCeEEecCCCCCC
Q 001452 456 PVRCSRCKAYINPFMKFIDQGRRFICSLCGFTD 488 (1075)
Q Consensus 456 pvRC~rCrAYiNPf~~f~~~G~~W~Cn~C~~~N 488 (1075)
-.||++|+.+... ....|.|+-||..+
T Consensus 70 ~~~C~~Cg~~~~~------~~~~~~CP~Cgs~~ 96 (115)
T TIGR00100 70 ECECEDCSEEVSP------EIDLYRCPKCHGIM 96 (115)
T ss_pred EEEcccCCCEEec------CCcCccCcCCcCCC
Confidence 5899999954433 23368999999766
No 119
>PF10138 vWA-TerF-like: vWA found in TerF C terminus ; InterPro: IPR019303 This entry represents the N-terminal domain of a family of proteins that confer resistance to the metalloid element tellurium and its salts.
Probab=31.42 E-value=3.9e+02 Score=29.16 Aligned_cols=145 Identities=11% Similarity=0.236 Sum_probs=81.1
Q ss_pred EEEEEEEcchhH---HhhhHHHHHHHHHHHHHhcCCCCCCcEEEEEEeCCeEEEEecCCCCCCceEeecCCccccccCCc
Q 001452 535 VFFFLIDVSMNA---LQTGATAAACSAISQVISDLPEGPRTMVGIATFDSTIHFYNLKRALQQPLMLIVPDVEDVYTPLQ 611 (1075)
Q Consensus 535 ~yvFvIDvS~~a---v~sG~l~~v~~aI~~~L~~Lp~~~rt~VGiITFDs~VhfYnl~~~l~qpqmlVvsDldd~FvPl~ 611 (1075)
...+|||.|.++ -++|.++.+.+.|...=-.+.++ -.|=+.+|++..+ . +.|+
T Consensus 3 rV~LVLD~SGSM~~~yk~G~vQ~~~Er~lalA~~~DdD--G~i~v~~Fs~~~~---------~-----~~~v-------- 58 (200)
T PF10138_consen 3 RVYLVLDISGSMRPLYKDGTVQRVVERILALAAQFDDD--GEIDVWFFSTEFD---------R-----LPDV-------- 58 (200)
T ss_pred EEEEEEeCCCCCchhhhCccHHHHHHHHHHHHhhcCCC--CceEEEEeCCCCC---------c-----CCCc--------
Confidence 457899999986 45788888888887766565543 2344444443221 1 1121
Q ss_pred ccceeehHHhHHHHHHHHhhcCccccCCCCccchHHHHHHHHHHHHHhc-C---CEEEEE-ecCCCCcCccccccccccc
Q 001452 612 SDIIVPVSECRQHLELLLESIPSMFQNNRTAESAFGAAVKAAFLALKST-G---GKLLVF-QSVLPSVGIGALSAREAEG 686 (1075)
Q Consensus 612 ~~lLv~l~esr~~I~~lLd~Lp~~f~~~~~~~~~lG~AL~aA~~lL~~~-G---GkIivF-~sg~Pt~GpG~L~~re~~~ 686 (1075)
.+.+....|+.+...+..+ .....+....||+.++.--... + --+++| |+|-|+ .+
T Consensus 59 -----t~~~~~~~v~~~~~~~~~~---~~~G~t~y~~vm~~v~~~y~~~~~~~~P~~VlFiTDG~~~-------~~---- 119 (200)
T PF10138_consen 59 -----TLDNYEGYVDELHAGLPDW---GRMGGTNYAPVMEDVLDHYFKREPSDAPALVLFITDGGPD-------DR---- 119 (200)
T ss_pred -----CHHHHHHHHHHHhcccccc---CCCCCcchHHHHHHHHHHHhhcCCCCCCeEEEEEecCCcc-------ch----
Confidence 2333344455444443222 2234478899999988877632 2 234444 444331 11
Q ss_pred CCCCCCCccccccccchhHHHHHHHHHHHHhcCcEEEEEEecCCccCcccccccccc
Q 001452 687 RSNISSGEKETHKLLQPADKTLKAMAIEFAEYQVCVDVFITTQTYVDIASISVIPKT 743 (1075)
Q Consensus 687 r~~~~~gt~ke~~ll~pa~~FYk~LA~~~~~~gIsVDlFl~s~~~~DlatL~~La~~ 743 (1075)
.--+++-.+++...|-.-++-+.....+ -|..|-.+
T Consensus 120 -------------------~~~~~~i~~as~~pifwqFVgiG~~~f~--fL~kLD~l 155 (200)
T PF10138_consen 120 -------------------RAIEKLIREASDEPIFWQFVGIGDSNFG--FLEKLDDL 155 (200)
T ss_pred -------------------HHHHHHHHhccCCCeeEEEEEecCCcch--HHHHhhcc
Confidence 1124555666778888888888776643 35555554
No 120
>COG1096 Predicted RNA-binding protein (consists of S1 domain and a Zn-ribbon domain) [Translation, ribosomal structure and biogenesis]
Probab=31.40 E-value=27 Score=37.35 Aligned_cols=26 Identities=42% Similarity=0.853 Sum_probs=20.8
Q ss_pred CcccCCCCceecCceEEEecCCeEEecCCCCC
Q 001452 456 PVRCSRCKAYINPFMKFIDQGRRFICSLCGFT 487 (1075)
Q Consensus 456 pvRC~rCrAYiNPf~~f~~~G~~W~Cn~C~~~ 487 (1075)
-.||.||++-|=. .++..+|.-||..
T Consensus 149 ~A~CsrC~~~L~~------~~~~l~Cp~Cg~t 174 (188)
T COG1096 149 YARCSRCRAPLVK------KGNMLKCPNCGNT 174 (188)
T ss_pred EEEccCCCcceEE------cCcEEECCCCCCE
Confidence 3799999996532 5778999999964
No 121
>PF08792 A2L_zn_ribbon: A2L zinc ribbon domain; InterPro: IPR014900 This zinc ribbon protein is found associated with some viral A2L transcription factors [].
Probab=30.79 E-value=56 Score=25.34 Aligned_cols=28 Identities=21% Similarity=0.485 Sum_probs=19.9
Q ss_pred CcccCCCCceecCceEE-EecCCeEEecCCCCCC
Q 001452 456 PVRCSRCKAYINPFMKF-IDQGRRFICSLCGFTD 488 (1075)
Q Consensus 456 pvRC~rCrAYiNPf~~f-~~~G~~W~Cn~C~~~N 488 (1075)
+.+|..|++-+ .+ .++ ...+|.+|+...
T Consensus 3 ~~~C~~C~~~~----i~~~~~-~~~~C~~Cg~~~ 31 (33)
T PF08792_consen 3 LKKCSKCGGNG----IVNKED-DYEVCIFCGSSF 31 (33)
T ss_pred ceEcCCCCCCe----EEEecC-CeEEcccCCcEe
Confidence 67899999854 23 333 368999999754
No 122
>PRK03681 hypA hydrogenase nickel incorporation protein; Validated
Probab=28.24 E-value=34 Score=33.71 Aligned_cols=28 Identities=18% Similarity=0.387 Sum_probs=19.4
Q ss_pred CCcccCCCCceecCceEEEecCC-eEEecCCCCCC
Q 001452 455 GPVRCSRCKAYINPFMKFIDQGR-RFICSLCGFTD 488 (1075)
Q Consensus 455 ~pvRC~rCrAYiNPf~~f~~~G~-~W~Cn~C~~~N 488 (1075)
.-.||+.|+.+. ..... .|.|.-||..+
T Consensus 69 ~~~~C~~Cg~~~------~~~~~~~~~CP~Cgs~~ 97 (114)
T PRK03681 69 AECWCETCQQYV------TLLTQRVRRCPQCHGDM 97 (114)
T ss_pred cEEEcccCCCee------ecCCccCCcCcCcCCCC
Confidence 368999999643 22222 38899999765
No 123
>COG4548 NorD Nitric oxide reductase activation protein [Inorganic ion transport and metabolism]
Probab=28.18 E-value=2.7e+02 Score=34.63 Aligned_cols=165 Identities=21% Similarity=0.234 Sum_probs=83.2
Q ss_pred CCcEEEEEEEcchhHHhhhH--HHHHHHHHHHHHhcCCCCCCcEEEEEEeCCeEEEEecCCCCCCc--eEeecCCccccc
Q 001452 532 MPAVFFFLIDVSMNALQTGA--TAAACSAISQVISDLPEGPRTMVGIATFDSTIHFYNLKRALQQP--LMLIVPDVEDVY 607 (1075)
Q Consensus 532 ~pp~yvFvIDvS~~av~sG~--l~~v~~aI~~~L~~Lp~~~rt~VGiITFDs~VhfYnl~~~l~qp--qmlVvsDldd~F 607 (1075)
...+|-++||||.+.... | ..-++..++++|..|... ..++.|...| |+..+. .++ .+-+|-|.|+.+
T Consensus 445 ~Dla~TLLvD~S~St~a~-mdetrRvidl~~eaL~~la~~----~qa~gd~~~~--~~fts~-rr~~vri~tvk~FDes~ 516 (637)
T COG4548 445 HDLAFTLLVDVSASTDAK-MDETRRVIDLFHEALLVLAHG----HQALGDSEDI--LDFTSR-RRPWVRINTVKDFDESM 516 (637)
T ss_pred ccceeEEEeecccchHHH-hhhhhhhHHHHHHHHHHhhch----hhhhCCHHHh--cCchhh-cCcceeeeeeecccccc
Confidence 346899999999986431 1 123455566666655432 1112221111 222111 122 233455666554
Q ss_pred cCCcccceeehHHhHHHHHHHHhhcCccccCCCCccchHHHHHHHHHHHHHhc---CCEEEEEecCCCCcCccccccccc
Q 001452 608 TPLQSDIIVPVSECRQHLELLLESIPSMFQNNRTAESAFGAAVKAAFLALKST---GGKLLVFQSVLPSVGIGALSAREA 684 (1075)
Q Consensus 608 vPl~~~lLv~l~esr~~I~~lLd~Lp~~f~~~~~~~~~lG~AL~aA~~lL~~~---GGkIivF~sg~Pt~GpG~L~~re~ 684 (1075)
-..- ... |-.|. -.-.+-.|.||..|..-|-.. -==+|||++|-||- +..-|
T Consensus 517 ~~~~----------~~R----ImALe------Pg~ytR~G~AIR~As~kL~~rpq~qklLivlSDGkPnd----~d~YE- 571 (637)
T COG4548 517 GETV----------GPR----IMALE------PGYYTRDGAAIRHASAKLMERPQRQKLLIVLSDGKPND----FDHYE- 571 (637)
T ss_pred cccc----------chh----heecC------ccccccccHHHHHHHHHHhcCcccceEEEEecCCCccc----ccccc-
Confidence 3210 111 11121 122345799999998877542 23578899998872 11111
Q ss_pred ccCCCCCCCccccccccchhHHHHHHHHHHHHhcCcEE-EEEEecCCccCccccccccccccceEEEE
Q 001452 685 EGRSNISSGEKETHKLLQPADKTLKAMAIEFAEYQVCV-DVFITTQTYVDIASISVIPKTTGGQVYYY 751 (1075)
Q Consensus 685 ~~r~~~~~gt~ke~~ll~pa~~FYk~LA~~~~~~gIsV-DlFl~s~~~~DlatL~~La~~TGG~v~~Y 751 (1075)
.+ +|- .+.| +-..++.+.||.| +||+ . =..+..+..+||-..|.+
T Consensus 572 -gr----~gI----------eDTr-~AV~eaRk~Gi~VF~Vtl-d-----~ea~~y~p~~fgqngYa~ 617 (637)
T COG4548 572 -GR----FGI----------EDTR-EAVIEARKSGIEVFNVTL-D-----REAISYLPALFGQNGYAF 617 (637)
T ss_pred -cc----cch----------hhHH-HHHHHHHhcCceEEEEEe-c-----chhhhhhHHHhccCceEE
Confidence 11 111 1223 4456788899874 3433 2 334667777777766643
No 124
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=27.99 E-value=36 Score=26.09 Aligned_cols=23 Identities=22% Similarity=0.657 Sum_probs=14.1
Q ss_pred ccCCCCceecCceEEEecCCeEEecCCCC
Q 001452 458 RCSRCKAYINPFMKFIDQGRRFICSLCGF 486 (1075)
Q Consensus 458 RC~rCrAYiNPf~~f~~~G~~W~Cn~C~~ 486 (1075)
+|..|+=...+- ...|+|.+|+.
T Consensus 3 ~C~~CGy~y~~~------~~~~~CP~Cg~ 25 (33)
T cd00350 3 VCPVCGYIYDGE------EAPWVCPVCGA 25 (33)
T ss_pred ECCCCCCEECCC------cCCCcCcCCCC
Confidence 577776433332 14688888876
No 125
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=26.20 E-value=53 Score=24.75 Aligned_cols=29 Identities=31% Similarity=0.645 Sum_probs=18.1
Q ss_pred ccCCCCceecCc-eEEEecCCe-----EEecCCCC
Q 001452 458 RCSRCKAYINPF-MKFIDQGRR-----FICSLCGF 486 (1075)
Q Consensus 458 RC~rCrAYiNPf-~~f~~~G~~-----W~Cn~C~~ 486 (1075)
||.+|+-.|-.- ..+...++. |+|..|+.
T Consensus 1 ~C~~C~~~i~~~~~~~~~~~~~~H~~Cf~C~~C~~ 35 (39)
T smart00132 1 KCAGCGKPIRGGELVLRALGKVWHPECFKCSKCGK 35 (39)
T ss_pred CccccCCcccCCcEEEEeCCccccccCCCCcccCC
Confidence 688999888774 223333333 57777774
No 126
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=26.17 E-value=29 Score=29.40 Aligned_cols=29 Identities=28% Similarity=0.733 Sum_probs=18.3
Q ss_pred ccCCCCceecCc-----------eEEEecCCeEEecCCCC
Q 001452 458 RCSRCKAYINPF-----------MKFIDQGRRFICSLCGF 486 (1075)
Q Consensus 458 RC~rCrAYiNPf-----------~~f~~~G~~W~Cn~C~~ 486 (1075)
+|..|+-..++- +.|.+--..|+|..|+.
T Consensus 3 ~C~~CgyiYd~~~Gd~~~~i~pGt~f~~Lp~~w~CP~C~a 42 (50)
T cd00730 3 ECRICGYIYDPAEGDPDEGIPPGTPFEDLPDDWVCPVCGA 42 (50)
T ss_pred CCCCCCeEECCCCCCcccCcCCCCCHhHCCCCCCCCCCCC
Confidence 677887655643 23433344689999985
No 127
>PF12257 DUF3608: Protein of unknown function (DUF3608); InterPro: IPR022046 This domain family is found in eukaryotes, and is approximately 280 amino acids in length. The family is found in association with PF00610 from PFAM.
Probab=25.84 E-value=8e+02 Score=28.22 Aligned_cols=64 Identities=13% Similarity=0.217 Sum_probs=41.5
Q ss_pred cchHHHHHHHHHHHHHh---------cCCEEEEEecCCCCcCcccccccccccCCCCCCCccccccccchhHHHHHHHHH
Q 001452 643 ESAFGAAVKAAFLALKS---------TGGKLLVFQSVLPSVGIGALSAREAEGRSNISSGEKETHKLLQPADKTLKAMAI 713 (1075)
Q Consensus 643 ~~~lG~AL~aA~~lL~~---------~GGkIivF~sg~Pt~GpG~L~~re~~~r~~~~~gt~ke~~ll~pa~~FYk~LA~ 713 (1075)
+..+--||..|+..+.. +|-.|++-+.| .|-.. -..+.++...+
T Consensus 202 ~gNiLEaINlaln~~~~~~idRdl~rTG~~iivITpG-----~Gvf~----------------------Vd~~ll~~T~~ 254 (281)
T PF12257_consen 202 KGNILEAINLALNQFDKHYIDRDLRRTGQSIIVITPG-----TGVFE----------------------VDYDLLRLTTQ 254 (281)
T ss_pred cccHHHHHHHHhhhcccccccCcccccCceEEEEcCC-----CceEE----------------------ECHHHHHHHHH
Confidence 34566677777776653 56666665543 33221 12345577788
Q ss_pred HHHhcCcEEEEEEecCCccC
Q 001452 714 EFAEYQVCVDVFITTQTYVD 733 (1075)
Q Consensus 714 ~~~~~gIsVDlFl~s~~~~D 733 (1075)
++..+||++|+++++..-..
T Consensus 255 rl~~~gi~~DlIcL~~~PLH 274 (281)
T PF12257_consen 255 RLLDNGIGIDLICLSKPPLH 274 (281)
T ss_pred HHHhcCccEEEEEcCCCCcc
Confidence 89999999999998865443
No 128
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=25.77 E-value=34 Score=26.83 Aligned_cols=29 Identities=28% Similarity=0.541 Sum_probs=21.8
Q ss_pred cccCCCCceecCceEEEecCCeEEecCCCC
Q 001452 457 VRCSRCKAYINPFMKFIDQGRRFICSLCGF 486 (1075)
Q Consensus 457 vRC~rCrAYiNPf~~f~~~G~~W~Cn~C~~ 486 (1075)
.||..|+....-+..+.+ +....|.-||.
T Consensus 6 y~C~~Cg~~fe~~~~~~~-~~~~~CP~Cg~ 34 (41)
T smart00834 6 YRCEDCGHTFEVLQKISD-DPLATCPECGG 34 (41)
T ss_pred EEcCCCCCEEEEEEecCC-CCCCCCCCCCC
Confidence 589999997766655544 56788999997
No 129
>PF06943 zf-LSD1: LSD1 zinc finger; InterPro: IPR005735 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This model describes a putative zinc finger domain found in three closely spaced copies in Arabidopsis protein LSD1 and in two copies in other proteins from the same species. The motif resembles CxxCRxxLMYxxGASxVxCxxC []. This domain may play a role in the regulation of transcription, via either repression of a prodeath pathway or activation of an antideath pathway, in response to signals emanating from cells undergoing pathogen-induced hypersensitive cell death. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].
Probab=24.82 E-value=69 Score=23.51 Aligned_cols=24 Identities=17% Similarity=0.606 Sum_probs=15.9
Q ss_pred cCCCCceecCceEEEecCCeEEecCCCC
Q 001452 459 CSRCKAYINPFMKFIDQGRRFICSLCGF 486 (1075)
Q Consensus 459 C~rCrAYiNPf~~f~~~G~~W~Cn~C~~ 486 (1075)
|.+||..+. .-.+-..++|..|.+
T Consensus 1 C~~Cr~~L~----yp~GA~sVrCa~C~~ 24 (25)
T PF06943_consen 1 CGGCRTLLM----YPRGAPSVRCACCHT 24 (25)
T ss_pred CCCCCceEE----cCCCCCCeECCccCc
Confidence 677777653 224566788888875
No 130
>PF12760 Zn_Tnp_IS1595: Transposase zinc-ribbon domain; InterPro: IPR024442 This zinc binding domain is found in a range of transposase proteins such as ISSPO8, ISSOD11, ISRSSP2 etc. It may be a zinc-binding beta ribbon domain that could bind DNA.
Probab=24.04 E-value=82 Score=25.86 Aligned_cols=27 Identities=19% Similarity=0.594 Sum_probs=19.3
Q ss_pred cccCCCCceecCceEEEecCCeEEecCCCC
Q 001452 457 VRCSRCKAYINPFMKFIDQGRRFICSLCGF 486 (1075)
Q Consensus 457 vRC~rCrAYiNPf~~f~~~G~~W~Cn~C~~ 486 (1075)
+.|.+|+.- ..| +..+...|+|.-|++
T Consensus 19 ~~CP~Cg~~-~~~--~~~~~~~~~C~~C~~ 45 (46)
T PF12760_consen 19 FVCPHCGST-KHY--RLKTRGRYRCKACRK 45 (46)
T ss_pred CCCCCCCCe-eeE--EeCCCCeEECCCCCC
Confidence 669999987 322 333456899999985
No 131
>COG1996 RPC10 DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger) [Transcription]
Probab=23.93 E-value=42 Score=28.43 Aligned_cols=29 Identities=24% Similarity=0.633 Sum_probs=19.4
Q ss_pred CcccCCCCceecCceEEEecCCeEEecCCCCCC
Q 001452 456 PVRCSRCKAYINPFMKFIDQGRRFICSLCGFTD 488 (1075)
Q Consensus 456 pvRC~rCrAYiNPf~~f~~~G~~W~Cn~C~~~N 488 (1075)
.=+|.+|++-+ ..+......+|.-||+.-
T Consensus 6 ~Y~C~~Cg~~~----~~~~~~~~irCp~Cg~rI 34 (49)
T COG1996 6 EYKCARCGREV----ELDQETRGIRCPYCGSRI 34 (49)
T ss_pred EEEhhhcCCee----ehhhccCceeCCCCCcEE
Confidence 35788888866 334455567888888643
No 132
>TIGR00311 aIF-2beta translation initiation factor aIF-2, beta subunit, putative.
Probab=23.26 E-value=80 Score=32.14 Aligned_cols=32 Identities=31% Similarity=0.650 Sum_probs=26.6
Q ss_pred CcccCCCCceecCceEEEecCCeE--EecCCCCCCCC
Q 001452 456 PVRCSRCKAYINPFMKFIDQGRRF--ICSLCGFTDET 490 (1075)
Q Consensus 456 pvRC~rCrAYiNPf~~f~~~G~~W--~Cn~C~~~N~v 490 (1075)
=|-|..|+. |=..++..++.| +|+-||..-.|
T Consensus 97 yVlC~~C~s---PdT~l~k~~r~~~l~C~ACGa~~~v 130 (133)
T TIGR00311 97 YVICRECNR---PDTRIIKEGRVSLLKCEACGAKAPL 130 (133)
T ss_pred eEECCCCCC---CCcEEEEeCCeEEEecccCCCCCcc
Confidence 489999995 777787777876 89999988766
No 133
>cd02342 ZZ_UBA_plant Zinc finger, ZZ type. Zinc finger present in plant ubiquitin-associated (UBA) proteins. The ZZ motif coordinates a zinc ion and most likely participates in ligand binding or molecular scaffolding.
Probab=22.91 E-value=58 Score=26.90 Aligned_cols=22 Identities=23% Similarity=0.659 Sum_probs=15.8
Q ss_pred cccCCCCceecCceEEEecCCeEEecCCC
Q 001452 457 VRCSRCKAYINPFMKFIDQGRRFICSLCG 485 (1075)
Q Consensus 457 vRC~rCrAYiNPf~~f~~~G~~W~Cn~C~ 485 (1075)
+.|..|+- .|. -|.+|+|..|.
T Consensus 1 I~CDgCg~--~PI-----~G~RykC~~C~ 22 (43)
T cd02342 1 IQCDGCGV--LPI-----TGPRYKSKVKE 22 (43)
T ss_pred CCCCCCCC--Ccc-----cccceEeCCCC
Confidence 46888874 444 37789999985
No 134
>smart00401 ZnF_GATA zinc finger binding to DNA consensus sequence [AT]GATA[AG].
Probab=22.82 E-value=50 Score=28.08 Aligned_cols=31 Identities=26% Similarity=0.664 Sum_probs=25.2
Q ss_pred CcccCCCCceecCceEEEecCCeEEecCCCC
Q 001452 456 PVRCSRCKAYINPFMKFIDQGRRFICSLCGF 486 (1075)
Q Consensus 456 pvRC~rCrAYiNPf~~f~~~G~~W~Cn~C~~ 486 (1075)
+.+|.+|++--.+..+-...|.+..||-|+.
T Consensus 3 ~~~C~~C~~~~T~~WR~g~~g~~~LCnaCgl 33 (52)
T smart00401 3 GRSCSNCGTTETPLWRRGPSGNKTLCNACGL 33 (52)
T ss_pred CCCcCCCCCCCCCccccCCCCCCcEeecccH
Confidence 5789999988888766666676799999995
No 135
>KOG1074 consensus Transcriptional repressor SALM [Transcription]
Probab=22.51 E-value=34 Score=43.70 Aligned_cols=41 Identities=20% Similarity=0.359 Sum_probs=32.4
Q ss_pred CCCCcccCCCCceecCceEEE------ecCCeEEecCCCCCCCCCcc
Q 001452 453 DMGPVRCSRCKAYINPFMKFI------DQGRRFICSLCGFTDETPRD 493 (1075)
Q Consensus 453 ~~~pvRC~rCrAYiNPf~~f~------~~G~~W~Cn~C~~~N~vP~~ 493 (1075)
.....||+-|.-..+.+.... .+-|-|+||+||..-...-+
T Consensus 350 ~~~khkCr~CakvfgS~SaLqiHlRSHTGERPfqCnvCG~~FSTkGN 396 (958)
T KOG1074|consen 350 PFFKHKCRFCAKVFGSDSALQIHLRSHTGERPFQCNVCGNRFSTKGN 396 (958)
T ss_pred ccccchhhhhHhhcCchhhhhhhhhccCCCCCeeecccccccccccc
Confidence 345789999999999887754 46789999999987666543
No 136
>PRK00564 hypA hydrogenase nickel incorporation protein; Provisional
Probab=22.30 E-value=35 Score=33.81 Aligned_cols=28 Identities=18% Similarity=0.654 Sum_probs=18.5
Q ss_pred CCcccCCCCceecCceEEEecCCeE-EecCCCCCC
Q 001452 455 GPVRCSRCKAYINPFMKFIDQGRRF-ICSLCGFTD 488 (1075)
Q Consensus 455 ~pvRC~rCrAYiNPf~~f~~~G~~W-~Cn~C~~~N 488 (1075)
...||+.|+.+... ....| +|.-||..+
T Consensus 70 ~~~~C~~Cg~~~~~------~~~~~~~CP~Cgs~~ 98 (117)
T PRK00564 70 VELECKDCSHVFKP------NALDYGVCEKCHSKN 98 (117)
T ss_pred CEEEhhhCCCcccc------CCccCCcCcCCCCCc
Confidence 36899999954322 22234 599999765
No 137
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=22.09 E-value=59 Score=28.62 Aligned_cols=29 Identities=34% Similarity=0.742 Sum_probs=22.7
Q ss_pred CcccCCCCceecCceEEEecCCeEEecCCCCCC
Q 001452 456 PVRCSRCKAYINPFMKFIDQGRRFICSLCGFTD 488 (1075)
Q Consensus 456 pvRC~rCrAYiNPf~~f~~~G~~W~Cn~C~~~N 488 (1075)
--.|..|+...-- ...++.|+|.-||..-
T Consensus 28 Sq~C~~CG~~~~~----~~~~r~~~C~~Cg~~~ 56 (69)
T PF07282_consen 28 SQTCPRCGHRNKK----RRSGRVFTCPNCGFEM 56 (69)
T ss_pred ccCccCccccccc----ccccceEEcCCCCCEE
Confidence 4679999987665 4567899999999763
No 138
>KOG2893 consensus Zn finger protein [General function prediction only]
Probab=21.88 E-value=8.5e+02 Score=27.24 Aligned_cols=7 Identities=43% Similarity=0.729 Sum_probs=3.1
Q ss_pred CCCCCCC
Q 001452 70 PPMSRPG 76 (1075)
Q Consensus 70 ~~~~~~~ 76 (1075)
||+..+|
T Consensus 135 pp~~~~g 141 (341)
T KOG2893|consen 135 PPSMAYG 141 (341)
T ss_pred CcccccC
Confidence 4444443
No 139
>COG2051 RPS27A Ribosomal protein S27E [Translation, ribosomal structure and biogenesis]
Probab=21.60 E-value=68 Score=28.85 Aligned_cols=33 Identities=30% Similarity=0.657 Sum_probs=25.3
Q ss_pred CcccCCCCceecCceEEEecCCeEEecCCCCCCCCC
Q 001452 456 PVRCSRCKAYINPFMKFIDQGRRFICSLCGFTDETP 491 (1075)
Q Consensus 456 pvRC~rCrAYiNPf~~f~~~G~~W~Cn~C~~~N~vP 491 (1075)
-++|..|+ |=-+.|.......+|+.||..--.|
T Consensus 19 ~VkCpdC~---N~q~vFshast~V~C~~CG~~l~~P 51 (67)
T COG2051 19 RVKCPDCG---NEQVVFSHASTVVTCLICGTTLAEP 51 (67)
T ss_pred EEECCCCC---CEEEEeccCceEEEecccccEEEec
Confidence 38899998 5566677778889999999765443
No 140
>PF14803 Nudix_N_2: Nudix N-terminal; PDB: 3CNG_C.
Probab=21.59 E-value=27 Score=27.27 Aligned_cols=30 Identities=27% Similarity=0.679 Sum_probs=14.8
Q ss_pred ccCCCCceecCceEEEecCCeEEecCCCCC
Q 001452 458 RCSRCKAYINPFMKFIDQGRRFICSLCGFT 487 (1075)
Q Consensus 458 RC~rCrAYiNPf~~f~~~G~~W~Cn~C~~~ 487 (1075)
-|..|++=+.--.--.|+..+|+|.-|+..
T Consensus 2 fC~~CG~~l~~~ip~gd~r~R~vC~~Cg~I 31 (34)
T PF14803_consen 2 FCPQCGGPLERRIPEGDDRERLVCPACGFI 31 (34)
T ss_dssp B-TTT--B-EEE--TT-SS-EEEETTTTEE
T ss_pred ccccccChhhhhcCCCCCccceECCCCCCE
Confidence 378888865433222255678999999864
No 141
>KOG2846 consensus Predicted membrane protein [Function unknown]
Probab=20.77 E-value=46 Score=38.49 Aligned_cols=36 Identities=19% Similarity=0.268 Sum_probs=24.5
Q ss_pred CcccCCCCceecCceEEEecCCeEEecCCCCCCCCC
Q 001452 456 PVRCSRCKAYINPFMKFIDQGRRFICSLCGFTDETP 491 (1075)
Q Consensus 456 pvRC~rCrAYiNPf~~f~~~G~~W~Cn~C~~~N~vP 491 (1075)
-.-|+.|+.-=+-.-.=...--.|+|.+|++.|.-.
T Consensus 220 ALIC~~C~~HNGla~~ee~~yi~F~C~~Cn~LN~~~ 255 (328)
T KOG2846|consen 220 ALICSQCHHHNGLARKEEYEYITFRCPHCNALNPAK 255 (328)
T ss_pred hhcchhhccccCcCChhhcCceEEECccccccCCCc
Confidence 567888887644443322223479999999999754
No 142
>PF08134 cIII: cIII protein family; InterPro: IPR012995 This family consists of the CIII family of regulatory proteins. The lambda CIII protein has 54 amino acids and it forms an amphipathic helix within its amino acid sequence. Lambda CIII stabilises the lambda CII protein and the host sigma factor 32, responsible for transcribing genes of the heat shock regulon [].
Probab=20.69 E-value=82 Score=25.49 Aligned_cols=23 Identities=22% Similarity=0.385 Sum_probs=18.8
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhc
Q 001452 1048 LQQYDNPLSKKLNDVVNEIRRQR 1070 (1075)
Q Consensus 1048 lp~~d~~~s~~l~~iI~~lr~~r 1070 (1075)
+-..++++|+|+|.+|...|++-
T Consensus 15 yYP~ESELskr~rrLIRaa~k~l 37 (44)
T PF08134_consen 15 YYPTESELSKRIRRLIRAARKQL 37 (44)
T ss_pred ecCcHHHHHHHHHHHHHHHHHHH
Confidence 44568999999999999887653
No 143
>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species. It is likely to bind zinc via its four well-conserved cysteine residues.
Probab=20.36 E-value=87 Score=22.79 Aligned_cols=24 Identities=42% Similarity=0.892 Sum_probs=17.6
Q ss_pred cCCCCceecCceEEEecCCeEEecCCCC
Q 001452 459 CSRCKAYINPFMKFIDQGRRFICSLCGF 486 (1075)
Q Consensus 459 C~rCrAYiNPf~~f~~~G~~W~Cn~C~~ 486 (1075)
|.+|+.-|-|.- .+..|.|.-||.
T Consensus 1 C~sC~~~i~~r~----~~v~f~CPnCG~ 24 (24)
T PF07754_consen 1 CTSCGRPIAPRE----QAVPFPCPNCGF 24 (24)
T ss_pred CccCCCcccCcc----cCceEeCCCCCC
Confidence 778877777652 356799999984
No 144
>PF12773 DZR: Double zinc ribbon
Probab=20.27 E-value=57 Score=26.88 Aligned_cols=32 Identities=19% Similarity=0.450 Sum_probs=25.0
Q ss_pred CCcccCCCCceecCceEEEecCCeEEecCCCCCCCCC
Q 001452 455 GPVRCSRCKAYINPFMKFIDQGRRFICSLCGFTDETP 491 (1075)
Q Consensus 455 ~pvRC~rCrAYiNPf~~f~~~G~~W~Cn~C~~~N~vP 491 (1075)
+-..|.+|++-+. ......++|.-|+..|+..
T Consensus 11 ~~~fC~~CG~~l~-----~~~~~~~~C~~Cg~~~~~~ 42 (50)
T PF12773_consen 11 DAKFCPHCGTPLP-----PPDQSKKICPNCGAENPPN 42 (50)
T ss_pred cccCChhhcCChh-----hccCCCCCCcCCcCCCcCC
Confidence 4688999999887 4455679999999987654
Done!