Query 001452
Match_columns 1075
No_of_seqs 229 out of 775
Neff 5.8
Searched_HMMs 29240
Date Tue Mar 26 15:49:25 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001452.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_755-759//hhsearch_pdb/001452hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3efo_B SEC24 related gene fami 1.0 1 1 1412.1 65.7 704 364-1075 1-724 (770)
2 3eh2_A Protein transport prote 1.0 1 1 1396.9 66.8 693 375-1075 15-720 (766)
3 3eh1_A Protein transport prote 1.0 1 1 1338.5 63.4 663 399-1074 34-708 (751)
4 1m2v_B SEC24, protein transpor 1.0 1 1 1334.9 57.7 672 391-1071 165-864 (926)
5 1pcx_A Protein transport prote 1.0 1 1 1326.9 62.7 689 357-1071 32-748 (810)
6 2nut_A Protein transport prote 1.0 1 1 1101.0 45.6 630 392-1072 5-705 (769)
7 1m2o_A SEC23, protein transpor 1.0 1 1 1100.1 45.5 601 402-1042 6-687 (768)
8 2yrc_A Protein transport prote 1.0 1 1 109.0 3.3 44 453-496 6-51 (59)
9 4fx5_A VON willebrand factor t 1.0 1 1 89.8 34.3 307 532-903 76-409 (464)
10 2x31_A Magnesium-chelatase 60 1.0 1 1 69.6 -4.2 179 532-771 4-187 (189)
No 1
>3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B
Probab=1.00 E-value=1 Score=1412.06 Aligned_cols=704 Identities=35% Similarity=0.674 Sum_probs=673.1
Q ss_pred CCCCCCCCCCC-------CCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCEEEECCCCCCCHHHHHHCCCCEEEEECCC
Q ss_conf 99999756984-------10135799989999998871232377789999266213655899777652188408998338
Q 001452 364 QIPRPVPSSTV-------VLYDTREGNQANPPPPATSEYIVRDMGNCSPRYMRCTISQIPCTNDLLTTSGMQLALLVQPL 436 (1075)
Q Consensus 364 ~iP~P~~~~~~-------~~~~t~~~~~~~~PP~~~t~~~~~D~GN~sP~yiR~T~~~iP~t~~ll~~~~LPLgivV~Pf 436 (1075)
|||+|+++.+. ..|.|...+ ..||+++++|++.|+|||+|+|||+|||+||.|++++++++||||++|+||
T Consensus 1 ~~ps~~~~~~~~~~~~~~~~~~t~~~~--~~pp~~~~~~~~~d~gn~~p~~~R~T~n~iP~t~~l~~~~~lPlg~~i~Pl 78 (770)
T 3efo_B 1 AMGSPIQVIENDRASRGGQVYATNTRG--QIPPLVTTDCMIQDQGNASPRFIRCTTYCFPCTSDMAKQAQIPLAAVIKPF 78 (770)
T ss_dssp CCCCHHHHHHHHHHHHTTSEEETTSSS--CCCCCTTSCCEEECSSSCCTTTEEESBSEEESSHHHHHHHCCCCEEEECTT
T ss_pred CCCCHHHHHHHHHHHCCCCCCCCCCCC--CCCCCCCCCEEEEECCCCCCCEEEEECCCCCCCHHHHHHCCCCEEEEEECC
T ss_conf 989668889989986289874579988--889898775366415779998588411347999999973799849999758
Q ss_pred CCCCCCCCCCEECCCCCCCCCCCCCCCCEECCCEEEEECCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99999999930024799998436899831238508980697499247999899973332478999887898898775673
Q 001452 437 ALPHPSEEPIQIVDFGDMGPVRCSRCKAYINPFMKFIDQGRRFICSLCGFTDETPRDYHCNLGPDGRRRDADDRPELCRG 516 (1075)
Q Consensus 437 a~~~~~e~pipvvd~g~~~pvRC~rCrAYINPf~~f~~~Gr~w~CnlC~~~N~vP~~Y~~~ld~~g~R~D~~~RPEL~~g 516 (1075)
++++++|.++|+||+++.+|+||+||||||||||+|+++|++|+||||+..|++|.+|++++|++|+|.|.++||||++|
T Consensus 79 ~~~~~~e~p~pvv~~~~~~pvRC~rCrayiNPf~~f~~~g~~w~Cn~C~~~N~~P~~Y~~~l~~~g~r~d~~~rpEL~~~ 158 (770)
T 3efo_B 79 ATIPSNESPLYLVNHGESGPVRCNRCKAYMCPFMQFIEGGRRYQCGFCNCVNDVPPFYFQHLDHIGRRLDHYEKPELSLG 158 (770)
T ss_dssp CCCCTTSCCCCEECCTTTCSCBCTTTCCBSCTTCEEEGGGTEEECTTTCCEEECCGGGCCCCCSSSCTTTGGGSHHHHCS
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCEEEECCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCC
T ss_conf 87876568987425778898735887888177359815997799546655578826752345534664664469200567
Q ss_pred CEEEEECCCCC--CCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCC-----CCCEEEEEEECCEEEEEECC
Q ss_conf 18998334211--379998289999976355885419999999999988529999-----97289999949969999558
Q 001452 517 TVEFVATKEYM--VRDPMPAVFFFLIDVSMNALQTGATAAACSAISQVISDLPEG-----PRTMVGIATFDSTIHFYNLK 589 (1075)
Q Consensus 517 tVEfvap~eY~--~R~p~pp~yvFvIDVS~~av~sG~l~~v~~sI~~~L~~Lp~~-----~rt~VGiITFDs~Ihfynl~ 589 (1075)
+|||++|+||+ .|+|+||+|+||||||++++++|+++.+|++|+++|+.||++ +|++|||||||++|||||++
T Consensus 159 tvEf~ap~eY~~~~~~p~pp~y~FvIDvs~~av~sg~l~~~~~sl~~~L~~lP~~~~~~~~~~~VG~ITfd~~vh~y~l~ 238 (770)
T 3efo_B 159 SYEYVATLDYCRKSKPPNPPAFIFMIDVSYSNIKNGLVKLICEELKTMLEKIPKEEQEETSAIRVGFITYNKVLHFFNVK 238 (770)
T ss_dssp EEEEECCGGGSGGGSCCCCCEEEEEEECSHHHHHTTHHHHHHHHHHHHGGGCCCCTTSSSCSCEEEEEEESSSEEEEECC
T ss_pred CEEEECCHHHHCCCCCCCCCEEEEEEECCHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCEEEEEECC
T ss_conf 42331687874367899985899999861432001289999999999998588533566766359999968889999678
Q ss_pred CCCCCCEEEECCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHH--CCCEEEEE
Q ss_conf 7789862862279643346776654041277699999999536743247887531289999999999870--49879999
Q 001452 590 RALQQPLMLIVPDVEDVYTPLQSDIIVPVSECRQHLELLLESIPSMFQNNRTAESAFGAAVKAAFLALKS--TGGKLLVF 667 (1075)
Q Consensus 590 ~~l~qpqmlVvsDldd~FvPlp~~lLv~l~Esr~~I~~lLe~Lp~~f~~~~~~~~~lG~AL~aA~~lLk~--~GGKIivF 667 (1075)
+.++++||+|++|++|+|+|++++|||+++|+++.|+++|++|+.+|.+++..++|+|+||++|+++|+. .||||++|
T Consensus 239 ~~~~q~q~~vv~d~~d~f~P~~~~~Lv~l~e~~~~i~~lL~~L~~~~~~~~~~~t~~g~al~aa~~~l~~~~~GGkI~~F 318 (770)
T 3efo_B 239 SNLAQPQMMVVTDVGEVFVPLLDGFLVNYQESQSVIHNLLDQIPDMFADSNENETVFAPVIQAGMEALKAADCPGKLFIF 318 (770)
T ss_dssp TTCSSCEEEEECCTTSCCCCCSSSSSBCTTTTHHHHHHHHHHHHHHHHTCCCCCCCCHHHHHHHHHHHHHHTCCEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEE
T ss_conf 85567549984264324677755503549999999999998627652578887534899999999984668888589999
Q ss_pred ECCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 147998-6765332454336777788841101235405899999999998368199999816874471102444445650
Q 001452 668 QSVLPS-VGIGALSAREAEGRSNISSGEKETHKLLQPADKTLKAMAIEFAEYQVCVDVFITTQTYVDIASISVIPKTTGG 746 (1075)
Q Consensus 668 ~ss~Pt-~GpGaL~~Re~~~~~~~~~gt~ke~~Ll~p~~~fYk~LA~~~~~~gIsVDlFl~s~~yvDiatL~~L~~~TGG 746 (1075)
++++|+ +|+|+|+.|++.+ .++++||+++++++++|||+||++|+++||+||||+++.+|+|+++|+.|++.|||
T Consensus 319 ~s~lP~t~GpG~l~~r~~~~----~~~t~ke~~~~~~a~~fY~~lA~~~~~~~i~VDlF~~s~~~vdlatl~~l~~~TGG 394 (770)
T 3efo_B 319 HSSLPTAEAPGKLKNRDDKK----LVNTDKEKILFQPQTNVYDSLAKDCVAHGCSVTLFLFPSQYVDVASLGLVPQLTGG 394 (770)
T ss_dssp ECSCCCSSSTTCCCCCCCCC----CSSCSCGGGGGSCSSSHHHHHHHHHHHTTEEEEEEECCSSCCCHHHHTHHHHHTTC
T ss_pred ECCCCCCCCCCCCCCCCCCC----CCCCCCHHHHHCCHHHHHHHHHHHHHHCCEEEEEEEECCCCCCHHHHHHHHHHCCC
T ss_conf 55789767886542444444----56772014430533799999999999759479999705876684888878760696
Q ss_pred EEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCCCEEECCCCCCCEEEEEEEECCC
Q ss_conf 69997378766635789999998216884235227999479916974327722479982262478999739999981488
Q 001452 747 QVYYYYPFSALSDPAKLYNDLRWNITRPQGFEAVMRVRCSQGIQVQEYHGNFCKRIPTDIDLPAIDCNKAIMVTLKHDDK 826 (1075)
Q Consensus 747 ~v~~Y~~F~~~~d~~kL~~dL~r~Ltr~~g~ea~lRVRcS~GL~V~~~~Gnf~~rs~~~~~lp~id~dtSi~veL~~d~~ 826 (1075)
.+|+|++|+.+.|.++|.+||.|.+++++||+|+||||||+||+|+++||||+.+++++|+++++++|++|+|+|+|+++
T Consensus 395 ~v~~y~~F~~~~~~~~f~~dl~~~l~~~~gf~a~mrVR~S~gl~v~~~~G~~~~~~t~~~~l~~~~~d~s~~v~f~~~~~ 474 (770)
T 3efo_B 395 TLYKYNNFQMHLDRQQFLNDLRNDIEKKIGFDAIMRVRTSTGFRATDFFGGILMNNTTDVEMAAIDCDKAVTVEFKHDDK 474 (770)
T ss_dssp CEEECTTCCHHHHHHHHHHHHHHHHHSCEEEEEEEEEEECTTEEEEEEESSCBCSSSSCEEEEEEESSCCEEEEEEESSC
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHCEEEEEEEEEEECCCEEEEEEECCEECCCCCCEEECCCCCCCEEEEEEEECCC
T ss_conf 69985687606689999999998632244423799999659848998677705788874484056867469999994477
Q ss_pred CCCCCCEEEEEEEEEEECCCCEEEEEEECCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Q ss_conf 79998128999999884288399999903457778977898605555799999999998449999799999999999999
Q 001452 827 LQDGSECAFQCALLYTTVYGQRRIRVTTLSLPCTSNLSNLYRSADLDTQFTCFMKQAASEIPSTPLANVREQMMNLCVNA 906 (1075)
Q Consensus 827 L~~~~~~yiQ~AlLYTs~~GeRRIRV~Tl~lpVts~l~~vf~~aD~dAi~~~laK~a~~~~l~~~l~d~R~~l~~~lv~i 906 (1075)
+.++..+|||+|++||+.+|+|||||||++++|++++.++|+++|++|++++|+|+|+.++++++++++|+.|+++|+++
T Consensus 475 l~~~~~~~~Q~allYt~~~G~RRiRV~T~~l~vt~~~~~v~~~~Dqea~~~llar~av~~~~~~~l~~~r~~L~~~~~~~ 554 (770)
T 3efo_B 475 LSEDSGALIQCAVLYTTISGQRRLRIHNLGLNCSSQLADLYKSCETDALINFFAKSAFKAVLHQPLKVIREILVNQTAHM 554 (770)
T ss_dssp CBTTTBEEEEEEEEEECTTCCEEEEEEEEEEEEESCHHHHHHTBCHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEEEEEEECCCCCEEEEEEEECHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 77888579999998781899989999986340126689999730999999999999999862277999999999999999
Q ss_pred HHHHHHHCCCCCCCCCCCCHHHCCHHHHHHHHHHCCCCCC--CCCCCHHHHHHHHHHCCCCHHHHCCCCCCEEEEECCCC
Q ss_conf 9999862046799974335021040999999862014989--99990399999999817991010002121189801499
Q 001452 907 LVSYRKFCATVSSSGQLILPEALKLLPLYTLALIKSTGLR--TDGRIDDRSFWITYVSSVSIPFAVPFVYPRMVAIHDLD 984 (1075)
Q Consensus 907 L~~YRk~ca~~~s~gQLiLPesLKlLPlyil~LlKs~~Lr--~~vs~DeR~~~~~~l~s~~v~~l~~~lYPrL~~lh~l~ 984 (1075)
|.+|||+|+..++++||+|||+||+||+|+++|+||.+|+ .++++|+|+|++++++++++..++.|+||+||++|++.
T Consensus 555 l~~Yrk~~~~~~s~~ql~Lp~~lkllP~~~~~L~Ks~~l~~~~~~s~Der~~~~~~l~~~~~~~~l~~iyP~L~~~h~l~ 634 (770)
T 3efo_B 555 LACYRKNCASPSAASQLILPDSMKVLPVYMNCLLKNCVLLSRPEISTDERAYQRQLVMTMGVADSQLFFYPQLLPIHTLD 634 (770)
T ss_dssp HHHHHHHTSCCCCTTEEEECGGGTTHHHHHHHHHHSGGGSCSSSSCHHHHHHHHHHHHHCCHHHHHHHHSCEEEECTTCC
T ss_pred HHHHHHHCCCCCCCCCEECCHHHHHHHHHHHHHHCCHHHCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHCCCEEEEECCC
T ss_conf 99999753377886542067889999999999967574268899982399999999977999999986102469974056
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEEEECCCEEEEEECCCCCHHHHHHHHCCCCCCCCC-CCCCCCCCCCHHHHHHHHHH
Q ss_conf 99999789974237411136872799975976999957988799999760999888989-72024788998799999999
Q 001452 985 KGEDGSIIPPFLPLSSEHVSDEGIYLLENGEDALIYIGSSVDSSILHQLFGISSVDEVP-TQFVLQQYDNPLSKKLNDVV 1063 (1075)
Q Consensus 985 ~~~~~~~lP~~l~LS~e~L~~~GiYLLDnG~~i~LwvG~~v~~~ll~~LFGv~s~~~i~-~~~~Lp~~dt~~s~~l~~iI 1063 (1075)
.+. ..+|++++||.++|+++||||||+|+.+|||+|+++++++++||||++++.+++ ....||++||++|+|||+||
T Consensus 635 ~~~--~~~P~~v~ls~~~l~~~giyLLD~g~~i~lw~G~~v~~~l~~~lfgv~~~~~i~~~~~~lp~~~~~~s~~vr~ii 712 (770)
T 3efo_B 635 VKS--TMLPAAVRCSESRLSEEGIFLLANGLHMFLWLGVSSPPELIQGIFNVPSFAHINTDMTLLPEVGNPYSQQLRMIM 712 (770)
T ss_dssp SSS--CSCCCCCCSSGGGCCTTCEEEEECSSEEEEEECTTCCHHHHHHHHSSSSGGGCCTTCCSCCCCCSSHHHHHHHHH
T ss_pred CCC--CCCCCCCCCCHHHCCCCCEEEEECCCEEEEEECCCCCHHHHHHHCCCCCHHHCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 555--667877277299718895799987857999966878989999864998344358444568888987999999999
Q ss_pred HHHHHHCCCCCC
Q ss_conf 999972159889
Q 001452 1064 NEIRRQRCSYLR 1075 (1075)
Q Consensus 1064 ~~lr~~r~~~~~ 1075 (1075)
++||++|.+|++
T Consensus 713 ~~lr~~r~~~~~ 724 (770)
T 3efo_B 713 GIIQQKRPYSMK 724 (770)
T ss_dssp HHHHTTCSSCCE
T ss_pred HHHHHHCCCCCC
T ss_conf 999973888751
No 2
>3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens}
Probab=1.00 E-value=1 Score=1396.92 Aligned_cols=693 Identities=39% Similarity=0.726 Sum_probs=664.7
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCEEEECCCCCCCHHHHHHCCCCEEEEECCCCCCCCCCCCCEECCCCCC
Q ss_conf 10135799989999998871232377789999266213655899777652188408998338999999999300247999
Q 001452 375 VLYDTREGNQANPPPPATSEYIVRDMGNCSPRYMRCTISQIPCTNDLLTTSGMQLALLVQPLALPHPSEEPIQIVDFGDM 454 (1075)
Q Consensus 375 ~~~~t~~~~~~~~PP~~~t~~~~~D~GN~sP~yiR~T~~~iP~t~~ll~~~~LPLgivV~Pfa~~~~~e~pipvvd~g~~ 454 (1075)
..|.|...+ .+||+++|+|++.|+|||+|+|||+|||+||.|++++++++||||++|+||+++++.|+++|+||+++.
T Consensus 15 ~~f~t~~~~--~~pP~~~t~~~~~d~gn~~p~~~R~T~~~iP~t~~l~~~~~lPlg~~i~P~~~~~~~e~~~pvv~~~~~ 92 (766)
T 3eh2_A 15 EPFVTGVRG--QVPPLVTTNFLVKDQGNASPRYIRCTSYNIPCTSDMAKQAQVPLAAVIKPLARLPPEEASPYVVDHGES 92 (766)
T ss_dssp SEEETTSTT--CCCCCTTSCCEEECSSSCCTTTEEESBSEEESSHHHHHHHTCCEEEEECTTCCCCTTSCCCEEECCGGG
T ss_pred CCCCCCCCC--CCCCCCCCCEEEECCCCCCCCEEECCCCCCCCCHHHHHHCCCCEEEEEECCCCCCCCCCCCCEECCCCC
T ss_conf 874359988--889987775476026889986377604447999999972789838998369868655789976047888
Q ss_pred CCCCCCCCCCEECCCEEEEECCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCC--CCCC
Q ss_conf 98436899831238508980697499247999899973332478999887898898775673189983342113--7999
Q 001452 455 GPVRCSRCKAYINPFMKFIDQGRRFICSLCGFTDETPRDYHCNLGPDGRRRDADDRPELCRGTVEFVATKEYMV--RDPM 532 (1075)
Q Consensus 455 ~pvRC~rCrAYINPf~~f~~~Gr~w~CnlC~~~N~vP~~Y~~~ld~~g~R~D~~~RPEL~~gtVEfvap~eY~~--R~p~ 532 (1075)
+|+||+||||||||||+|+++|++|+||||+..|++|.+|++++|++|+|.|.++||||++|+|||++|+||+. |+|+
T Consensus 93 ~pvRC~rCrayiNPf~~f~~~g~~w~Cn~C~~~N~~P~~Y~~~l~~~g~r~d~~~rpEL~~~~vef~a~~eY~~~~~~p~ 172 (766)
T 3eh2_A 93 GPLRCNRCKAYMCPFMQFIEGGRRFQCCFCSCINDVPPQYFQHLDHTGKRVDAYDRPELSLGSYEFLATVDYCKNNKFPS 172 (766)
T ss_dssp CCCBCTTTCCBCCTTCEEEGGGTEEECTTTCCEEECCTTTTGGGGGSSSCCCCSCCHHHHCSEEEEECCGGGSGGGSCCC
T ss_pred CCCCCCCCCCEECCCEEEECCCCEEEECCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCEEEECCHHHCCCCCCCC
T ss_conf 88716898888277358825998899524566688997883345534664664468423668423306875505788999
Q ss_pred CCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCC-----CCCEEEEEEECCEEEEEECCCCCCCCEEEECCCCCCCC
Q ss_conf 8289999976355885419999999999988529999-----97289999949969999558778986286227964334
Q 001452 533 PAVFFFLIDVSMNALQTGATAAACSAISQVISDLPEG-----PRTMVGIATFDSTIHFYNLKRALQQPLMLIVPDVEDVY 607 (1075)
Q Consensus 533 pp~yvFvIDVS~~av~sG~l~~v~~sI~~~L~~Lp~~-----~rt~VGiITFDs~Ihfynl~~~l~qpqmlVvsDldd~F 607 (1075)
||+|+||||||++++++|+++++|++|+.+|+.||++ ++++|||||||++|||||++.+++++||+|++|++|+|
T Consensus 173 pp~y~FvIDvs~~av~sg~l~~~~~si~~~L~~lp~~~~~~~~~~~VG~ITfd~~vh~y~l~~~~~~~q~~vv~dl~d~f 252 (766)
T 3eh2_A 173 PPAFIFMIDVSYNAIRTGLVRLLCEELKSLLDFLPREGGAEESAIRVGFVTYNKVLHFYNVKSSLAQPQMMVVSDVADMF 252 (766)
T ss_dssp CCEEEEEEECSHHHHHTTHHHHHHHHHHHHGGGCCCCSSCSSCCCEEEEEEESSSEEEEECCTTCSSCEEEEECCTTTCC
T ss_pred CCEEEEEEECCHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCEEEEEECCCCCCCCEEEEECCHHHHC
T ss_conf 97899999884342103189999999999998587533567766359999958879999778877786599844756640
Q ss_pred CCCCCCCEEEHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHH--CCCEEEEEECCCCC-CCCCCCCCCCC
Q ss_conf 6776654041277699999999536743247887531289999999999870--49879999147998-67653324543
Q 001452 608 TPLQSDIIVPVSECRQHLELLLESIPSMFQNNRTAESAFGAAVKAAFLALKS--TGGKLLVFQSVLPS-VGIGALSAREA 684 (1075)
Q Consensus 608 vPlp~~lLv~l~Esr~~I~~lLe~Lp~~f~~~~~~~~~lG~AL~aA~~lLk~--~GGKIivF~ss~Pt-~GpGaL~~Re~ 684 (1075)
+|++++||++++|+++.|+++|++|+++|.+++..++|+|+||++|+++|+. .||||++|++++|+ +|+|+|+.|++
T Consensus 253 ~P~~~~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~t~~g~al~aa~~~l~~~~~GGkI~~F~s~lP~t~GpG~l~~r~~ 332 (766)
T 3eh2_A 253 VPLLDGFLVNVNESRAVITSLLDQIPEMFADTRETETVFVPVIQAGMEALKAAECAGKLFLFHTSLPIAEAPGKLKNRDD 332 (766)
T ss_dssp CCCCTTSSBCTTTTHHHHHHHHHHHHHHHTTCCCCCCCSHHHHHHHHHHHHHTTCCEEEEEEECSCCCSSSTTCCCCCCC
T ss_pred CCCCCCEEEEHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCCC
T ss_conf 66545356768998999999998616541578887641799999999983568988689999667898678862104554
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHH
Q ss_conf 36777788841101235405899999999998368199999816874471102444445650699973787666357899
Q 001452 685 EGRSNISSGEKETHKLLQPADKTLKAMAIEFAEYQVCVDVFITTQTYVDIASISVIPKTTGGQVYYYYPFSALSDPAKLY 764 (1075)
Q Consensus 685 ~~~~~~~~gt~ke~~Ll~p~~~fYk~LA~~~~~~gIsVDlFl~s~~yvDiatL~~L~~~TGG~v~~Y~~F~~~~d~~kL~ 764 (1075)
.+ .++++||+++++++++|||+||++|+++||+||||+++.+|+|+++|+.|++.|||.+++|++|+.++|.++|.
T Consensus 333 ~~----~~~sdke~~~~~~a~~fY~~la~~~~~~~i~VDlF~~s~~~vdlatl~~l~~~TGG~v~~y~~F~~~~d~~~f~ 408 (766)
T 3eh2_A 333 RK----LINTDKEKTLFQPQTGAYQTLAKECVAQGCCVDLFLFPNQYVDVATLSVVPQLTGGSVYKYASFQVENDQERFL 408 (766)
T ss_dssp GG----GTTSTTGGGGTSCSSTHHHHHHHHHHHHTEEEEEEECCSSCCCHHHHTHHHHHTTCCEEECTTCCHHHHHHHHH
T ss_pred CC----CCCCCCHHHHCCCHHHHHHHHHHHHHHCCEEEEEEEECCCCCCHHHHHHHHHHCCCEEEEECCCCCHHHHHHHH
T ss_conf 55----67772003320643899999999987578689999814877684878777760696699967986066789999
Q ss_pred HHHHHHCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCCCEEECCCCCCCEEEEEEEECCCCCCCCCEEEEEEEEEEEC
Q ss_conf 99998216884235227999479916974327722479982262478999739999981488799981289999998842
Q 001452 765 NDLRWNITRPQGFEAVMRVRCSQGIQVQEYHGNFCKRIPTDIDLPAIDCNKAIMVTLKHDDKLQDGSECAFQCALLYTTV 844 (1075)
Q Consensus 765 ~dL~r~Ltr~~g~ea~lRVRcS~GL~V~~~~Gnf~~rs~~~~~lp~id~dtSi~veL~~d~~L~~~~~~yiQ~AlLYTs~ 844 (1075)
+||.|.+++++||+|+||||||+||+|+++||||+.+++++|+++++++|++|+|+|+|++++.++..+|||+|++||+.
T Consensus 409 ~dl~~~l~~~~gf~a~mrVR~S~glkv~~~~G~~~~~~t~~~~l~~i~~d~s~~v~f~~~~~l~~~~~~~~Q~allYt~~ 488 (766)
T 3eh2_A 409 SDLRRDVQKVVGFDAVMRVRTSTGIRAVDFFGAFYMSNTTDVELAGLDGDKTVTVEFKHDDRLNEESGALLQCALLYTSC 488 (766)
T ss_dssp HHHHHHHHSCEEEEEEEEEEECTTEEEEEEEESCBCSSSSCEEEEEEETTCCEEEEEEESSCCCTTTCEEEEEEEEEECT
T ss_pred HHHHHHHHHCCEEEEEEEEEECCCEEEEEEECCEECCCCCCEEECCCCCCCEEEEEEEECCCCCCCCCEEEEEEEEEECC
T ss_conf 99999753251001799999569837988677854589774462257988569999995577778885799999985808
Q ss_pred CCCEEEEEEECCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 88399999903457778977898605555799999999998449999799999999999999999986204679997433
Q 001452 845 YGQRRIRVTTLSLPCTSNLSNLYRSADLDTQFTCFMKQAASEIPSTPLANVREQMMNLCVNALVSYRKFCATVSSSGQLI 924 (1075)
Q Consensus 845 ~GeRRIRV~Tl~lpVts~l~~vf~~aD~dAi~~~laK~a~~~~l~~~l~d~R~~l~~~lv~iL~~YRk~ca~~~s~gQLi 924 (1075)
+|+|||||||++++|++++.++|+++|++|++++|+|+|+.++++++++++|+.|+++|+++|++|||+|+..++.+||+
T Consensus 489 ~G~RRiRV~T~~l~vt~~~~~v~~~~Dqea~~~llar~av~~~~~~~~~~~R~~l~~~~~~~l~~Yrk~~~~~~s~~ql~ 568 (766)
T 3eh2_A 489 AGQRRLRIHNLALNCCTQLADLYRNCETDTLINYMAKFAYRGVLNSPVKAVRDTLITQCAQILACYRKNCASPSSAGQLI 568 (766)
T ss_dssp TSCEEEEEEEEEEEEESSHHHHHHTBCHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHHHHHC------CCCC
T ss_pred CCCEEEEEEEEEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEE
T ss_conf 99889999977447528899999732999999999999998752089999999999999999999986435888865431
Q ss_pred CHHHCCHHHHHHHHHHCCCCCC--CCCCCHHHHHHHHHHCCCCHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 5021040999999862014989--99990399999999817991010002121189801499999997899742374111
Q 001452 925 LPEALKLLPLYTLALIKSTGLR--TDGRIDDRSFWITYVSSVSIPFAVPFVYPRMVAIHDLDKGEDGSIIPPFLPLSSEH 1002 (1075)
Q Consensus 925 LPesLKlLPlyil~LlKs~~Lr--~~vs~DeR~~~~~~l~s~~v~~l~~~lYPrL~~lh~l~~~~~~~~lP~~l~LS~e~ 1002 (1075)
|||+||+||+|+++|+||.+|+ .++++|+|+|++++++++++..++.|+||+||++|++..++ ..+|++++||.++
T Consensus 569 lp~~lkllP~~~~~L~Ks~~l~~~~~~s~Der~~~~~~l~~~~~~~~l~~iyP~L~~~h~~~~~~--~~~P~~v~ls~~~ 646 (766)
T 3eh2_A 569 LPECMKLLPVYLNCVLKSDVLQPGAEVTTDDRAYVRQLVTSMDVTETNVFFYPRLLPLTKSPVES--TTEPPAVRASEER 646 (766)
T ss_dssp CCGGGTTHHHHHHHHHTSTTTSCCTTCCHHHHHHHHHHHHHCCHHHHHHHHSCEEEECSSCCCSC--C--CCCBCSSGGG
T ss_pred CCHHHHHHHHHHHHHHCCHHHCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHEEEEEECCCCCC--CCCCCCCCCCHHH
T ss_conf 67789999999999975685367899983399999999977999999998753489962377555--6689873776887
Q ss_pred CCCCCEEEEECCCEEEEEECCCCCHHHHHHHHCCCCCCCCC-CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 36872799975976999957988799999760999888989-72024788998799999999999972159889
Q 001452 1003 VSDEGIYLLENGEDALIYIGSSVDSSILHQLFGISSVDEVP-TQFVLQQYDNPLSKKLNDVVNEIRRQRCSYLR 1075 (1075)
Q Consensus 1003 L~~~GiYLLDnG~~i~LwvG~~v~~~ll~~LFGv~s~~~i~-~~~~Lp~~dt~~s~~l~~iI~~lr~~r~~~~~ 1075 (1075)
|+++||||||+|+.+|||+|+++++++++||||++++.+++ ....||++||++|+|||+||++||++|..|++
T Consensus 647 l~~~giyLlD~g~~i~lw~G~~v~~~~l~dlFgv~~~~~i~~~~~~lp~~~~~~s~~vr~ii~~lr~~~~~~~~ 720 (766)
T 3eh2_A 647 LSNGDIYLLENGLNLFLWVGASVQQGVVQSLFSVSSFSQITSGLSVLPVLDNPLSKKVRGLIDSLRAQRSRYMK 720 (766)
T ss_dssp CCTTCEEEEECSSEEEEEECTTCCHHHHHHHHSCSSGGGSCTTCCSCCCCSSHHHHHHHHHHHHHHTTSSSCCE
T ss_pred CCCCCEEEEECCCEEEEEECCCCCHHHHHHHCCCCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCE
T ss_conf 17895899976857999966878989999872998456548444658889987999999999999974888740
No 3
>3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B
Probab=1.00 E-value=1 Score=1338.48 Aligned_cols=663 Identities=35% Similarity=0.643 Sum_probs=626.8
Q ss_pred CCCCCCCCCEEEECCCCCCCHHHHHHCCCCEEEEECCCCCCCCCCCCCEECCCCCCCCCCCCCCCCEECCCEEEEECCCE
Q ss_conf 77789999266213655899777652188408998338999999999300247999984368998312385089806974
Q 001452 399 DMGNCSPRYMRCTISQIPCTNDLLTTSGMQLALLVQPLALPHPSEEPIQIVDFGDMGPVRCSRCKAYINPFMKFIDQGRR 478 (1075)
Q Consensus 399 D~GN~sP~yiR~T~~~iP~t~~ll~~~~LPLgivV~Pfa~~~~~e~pipvvd~g~~~pvRC~rCrAYINPf~~f~~~Gr~ 478 (1075)
++|||+|+|||+|||+||.|++++++++||||++|+||++.. ++|+++. .+|+||+||||||||||+|.+ |++
T Consensus 34 ~~~n~~p~~~R~T~n~iP~t~~~~~~~~lPlg~~i~Pl~~~~----~~P~v~~--~~p~RC~rCrayiNPf~~f~~-~~~ 106 (751)
T 3eh1_A 34 KKLNCSPDSFRCTLTNIPQTQALLNKAKLPLGLLLHPFRDLT----QLPVITS--NTIVRCRSCRTYINPFVSFID-QRR 106 (751)
T ss_dssp HHHSCCTTTEEESBSSEESSHHHHHHHCCCCEEEECTTCCCS----CCCEECC--SCCCBCTTTCCBCCTTCEESS-SSE
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHCCCCEEEEEECCCCCC----CCCCCCC--CCCCCCCCCCCEECCCEEEEC-CCE
T ss_conf 025899885782634478999999727898699985387678----9994399--999746686689078427822-998
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHH
Q ss_conf 99247999899973332478999887898898775673189983342113799982899999763558854199999999
Q 001452 479 FICSLCGFTDETPRDYHCNLGPDGRRRDADDRPELCRGTVEFVATKEYMVRDPMPAVFFFLIDVSMNALQTGATAAACSA 558 (1075)
Q Consensus 479 w~CnlC~~~N~vP~~Y~~~ld~~g~R~D~~~RPEL~~gtVEfvap~eY~~R~p~pp~yvFvIDVS~~av~sG~l~~v~~s 558 (1075)
|+||||+..|++|.+|+++. ..+++.|.++||||++|||||++|+||+.|+|+||+|+||||||++++++|+++.+|++
T Consensus 107 w~Cn~C~~~N~~P~~y~~~~-~~~~~~d~~~rpEL~~~tvEy~~p~~y~~r~p~pp~yvFvIDvs~~a~~~g~l~~~~~s 185 (751)
T 3eh1_A 107 WKCNLCYRVNDVPEEFMYNP-LTRSYGEPHKRPEVQNSTVEFIASSDYMLRPPQPAVYLFVLDVSHNAVEAGYLTILCQS 185 (751)
T ss_dssp EECTTTCCEEECCGGGC----------CGGGSHHHHCSEEEEEECGGGCSSSCCCCEEEEEEECSHHHHHHTHHHHHHHH
T ss_pred EECCCCCCCCCCCHHHHCCC-CCCCCCCCCCCCHHCCCEEEEECCHHHHCCCCCCCEEEEEEECCHHHHHHHHHHHHHHH
T ss_conf 98255667788977871153-23333674448300252279975766504799985799999752766554299999999
Q ss_pred HHHHHHCCCCCCCCEEEEEEECCEEEEEECCCCCCCCEEEECCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 99988529999972899999499699995587789862862279643346776654041277699999999536743247
Q 001452 559 ISQVISDLPEGPRTMVGIATFDSTIHFYNLKRALQQPLMLIVPDVEDVYTPLQSDIIVPVSECRQHLELLLESIPSMFQN 638 (1075)
Q Consensus 559 I~~~L~~Lp~~~rt~VGiITFDs~Ihfynl~~~l~qpqmlVvsDldd~FvPlp~~lLv~l~Esr~~I~~lLe~Lp~~f~~ 638 (1075)
|+++|+.||++.|++|||||||++||||+++.+++++||+|++|++|+|+|++++|||+++|+++.|+++|++|+++|.+
T Consensus 186 l~~~L~~lp~~~~~~VG~ITfd~~vh~y~l~~~~~~~qmlvv~dl~d~f~P~~~~~lv~l~e~~~~i~~lL~~Lp~~~~~ 265 (751)
T 3eh1_A 186 LLENLDKLPGDSRTRIGFMTFDSTIHFYNLQEGLSQPQMLIVSDIDDVFLPTPDSLLVNLYESKELIKDLLNALPNMFTN 265 (751)
T ss_dssp HHHHTTTSSCCTTCEEEEEEESSSEEEEECCTTCSSCEEEEESCTTCTTSCCGGGTSEETTTTHHHHHHHHHHGGGTSTT
T ss_pred HHHHHHHCCCCCCCEEEEEEECCEEEEEECCCCCCCCEEECCCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99999866898674799999687799997788766641342355444577780442002999999999999854675337
Q ss_pred CCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 88753128999999999987049879999147998676533245433677778884110123540589999999999836
Q 001452 639 NRTAESAFGAAVKAAFLALKSTGGKLLVFQSVLPSVGIGALSAREAEGRSNISSGEKETHKLLQPADKTLKAMAIEFAEY 718 (1075)
Q Consensus 639 ~~~~~~~lG~AL~aA~~lLk~~GGKIivF~ss~Pt~GpGaL~~Re~~~~~~~~~gt~ke~~Ll~p~~~fYk~LA~~~~~~ 718 (1075)
++++++|+|+||++|..+|+.+||||++|++++||+|+|+|+.|++.+ ..+++||+++++++++|||+||++|+++
T Consensus 266 ~~~~~~~~G~AL~aA~~ll~~~GGrI~~F~sg~pt~GpG~l~~r~~~~----~~~~~ke~~~~~~a~~fY~~la~~~~~~ 341 (751)
T 3eh1_A 266 TRETHSALGPALQAAFKLMSPTGGRVSVFQTQLPSLGAGLLQSREDPN----QRSSTKVVQHLGPATDFYKKLALDCSGQ 341 (751)
T ss_dssp CSCCCCCHHHHHHHHHHHHTTTCEEEEEEECSCCCSSTTCCCCCCCSC----GGGGSSSCTTCSCSCSHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCC----CCCCCHHHHHHCCHHHHHHHHHHHHHHC
T ss_conf 888764459999999998514797799995579977887554555555----5787015655051689999999999865
Q ss_pred CCEEEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCC---HHHHHHHHHHHCCCCCCCCCEEEEEECCCCEEEEEE
Q ss_conf 81999998168744711024444456506999737876663---578999999821688423522799947991697432
Q 001452 719 QVCVDVFITTQTYVDIASISVIPKTTGGQVYYYYPFSALSD---PAKLYNDLRWNITRPQGFEAVMRVRCSQGIQVQEYH 795 (1075)
Q Consensus 719 gIsVDlFl~s~~yvDiatL~~L~~~TGG~v~~Y~~F~~~~d---~~kL~~dL~r~Ltr~~g~ea~lRVRcS~GL~V~~~~ 795 (1075)
||+||+|+++.+|+|+++|+.+++.|||.+++|++|+...| .++|.+||+|.+++++||+|+||||||+||+|+++|
T Consensus 342 ~i~VDlF~~s~~~~dlatl~~l~~~TGG~v~~y~~F~~~~~~~~~~~f~~dl~r~l~~~~gf~a~mrVR~S~glkv~~~~ 421 (751)
T 3eh1_A 342 QTAVDLFLLSSQYSDLASLACMSKYSAGCIYYYPSFHYTHNPSQAEKLQKDLKRYLTRKIGFEAVMRIRCTKGLSMHTFH 421 (751)
T ss_dssp TEEEEEEECCSSCCCHHHHTHHHHTTTCCEEECTTCBTTTBHHHHHHHHHHHHHHHHSCCEEEEEEEEEECTTEEEEEEE
T ss_pred CCEEEEEECCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCEEEEEEE
T ss_conf 96279997167556718677777606866999678654346268899999999998654023258999706984887766
Q ss_pred CCCCCCCCCCEEECCCCCCCEEEEEEEECCCCCCCCCEEEEEEEEEEECCCCEEEEEEECCCCCCCCHHHHHHHCCHHHH
Q ss_conf 77224799822624789997399999814887999812899999988428839999990345777897789860555579
Q 001452 796 GNFCKRIPTDIDLPAIDCNKAIMVTLKHDDKLQDGSECAFQCALLYTTVYGQRRIRVTTLSLPCTSNLSNLYRSADLDTQ 875 (1075)
Q Consensus 796 Gnf~~rs~~~~~lp~id~dtSi~veL~~d~~L~~~~~~yiQ~AlLYTs~~GeRRIRV~Tl~lpVts~l~~vf~~aD~dAi 875 (1075)
|||+.+++++|+++++++|++|+|+|+|++++.++..+|||+|++||+.+|+|||||||++++|++++.++|+++|++|+
T Consensus 422 G~~~~~~t~~~~l~~i~~d~s~~v~~~~~~~l~~~~~~~~Q~allYT~~~G~RRiRV~T~~l~vt~~~~~v~~~~DqeA~ 501 (751)
T 3eh1_A 422 GNFFVRSTDLLSLANINPDAGFAVQLSIEESLTDTSLVCFQTALLYTSSKGERRIRVHTLCLPVVSSLADVYAGVDVQAA 501 (751)
T ss_dssp SSSEECSSSEEEEEEECTTCCEEEEEEESSCCCSCSEEEEEEEEEEECTTSCEEEEEEEEEEEEECSHHHHHHTBCHHHH
T ss_pred CCEEECCCCCEEECCCCCCCEEEEEEEECCCCCCCCCEEEEEEEEEECCCCCEEEEEEEECCCCCCCHHHHHHHCCHHHH
T ss_conf 77581798736712679787899999975777788845999989456289988999998642125889999873599999
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCHHHHHHHHHHCCCCCC--CCCCCHH
Q ss_conf 99999999984499997999999999999999999862046799974335021040999999862014989--9999039
Q 001452 876 FTCFMKQAASEIPSTPLANVREQMMNLCVNALVSYRKFCATVSSSGQLILPEALKLLPLYTLALIKSTGLR--TDGRIDD 953 (1075)
Q Consensus 876 ~~~laK~a~~~~l~~~l~d~R~~l~~~lv~iL~~YRk~ca~~~s~gQLiLPesLKlLPlyil~LlKs~~Lr--~~vs~De 953 (1075)
+++|+|+|+++++++++.|+|++|+++|+++|++||++|+.. +++||+|||+||+||+|+++|+||.+|+ .++++|+
T Consensus 502 ~~llar~av~~~~~~~l~d~r~~l~~~li~il~~Yr~~~~~~-~~~~l~lpe~lkllP~~~~~L~Ks~~~~~~~~~s~De 580 (751)
T 3eh1_A 502 ICLLANMAVDRSVSSSLSDARDALVNAVVDSLSAYGSTVSNL-QHSALMAPSSLKLFPLYVLALLKQKAFRTGTSTRLDD 580 (751)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTTCC------CCEEEGGGTTHHHHHHHHHTSTTTCCSSCCCHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCCCCCCHHHHHHHHHHHHHHCCHHHCCCCCCCHHH
T ss_conf 999999999987419999999999999999999998754568-8865117677889999999997338535889999109
Q ss_pred HHHHHHHHCCCCHHHHCCCCCCEEEEECCCCCCC-----C-CCCCCCCCCCCCCCCCCCCEEEEECCCEEEEEECCCCCH
Q ss_conf 9999999817991010002121189801499999-----9-978997423741113687279997597699995798879
Q 001452 954 RSFWITYVSSVSIPFAVPFVYPRMVAIHDLDKGE-----D-GSIIPPFLPLSSEHVSDEGIYLLENGEDALIYIGSSVDS 1027 (1075)
Q Consensus 954 R~~~~~~l~s~~v~~l~~~lYPrL~~lh~l~~~~-----~-~~~lP~~l~LS~e~L~~~GiYLLDnG~~i~LwvG~~v~~ 1027 (1075)
|+|++++++++++..++.|+||+||++|++.+++ + ...+|..++||.++|+++||||||+|+.+|||+|+++++
T Consensus 581 r~~~~~~l~~~~~~~~~~~iyP~L~~~h~l~~~~~~~~~~~~~~~P~~l~ls~~~l~~~giyLlD~g~~i~lw~G~~v~~ 660 (751)
T 3eh1_A 581 RVYAMCQIKSQPLVHLMKMIHPNLYRIDRLTDEGAVHVNDRIVPQPPLQKLSAEKLTREGAFLMDCGSVFYIWVGKGCDN 660 (751)
T ss_dssp HHHHHHHHHHSCHHHHHHHHSCEEEECTTCCSTTCEEETTEEECCCCCBCSSGGGCCTTSEEEEECSSEEEEEECTTCCH
T ss_pred HHHHHHHHHCCCHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCEEEEECCCEEEEEECCCCCH
T ss_conf 99999999679999988642662898204763357566887667897346779882258789997898899997798998
Q ss_pred HHHHHHHCCCCCCCCC-CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 9999760999888989-7202478899879999999999997215988
Q 001452 1028 SILHQLFGISSVDEVP-TQFVLQQYDNPLSKKLNDVVNEIRRQRCSYL 1074 (1075)
Q Consensus 1028 ~ll~~LFGv~s~~~i~-~~~~Lp~~dt~~s~~l~~iI~~lr~~r~~~~ 1074 (1075)
++++||||++++.+++ ....||++||++|+|||+||+++|++|..+.
T Consensus 661 ~ll~dlFGv~~~~~~~~~~~~lp~~~t~~s~~vr~ii~~lr~~r~~~~ 708 (751)
T 3eh1_A 661 NFIEDVLGYTNFASIPQKMTHLPELDTLSSERARSFITWLRDSRPLSP 708 (751)
T ss_dssp HHHHHTTCCSSGGGCCSSBCCCCCCSSHHHHHHHHHHHHHHHTSSSCC
T ss_pred HHHHHHCCCCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCC
T ss_conf 999997099945536853356877788789999999999985098764
No 4
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Probab=1.00 E-value=1 Score=1334.90 Aligned_cols=672 Identities=27% Similarity=0.525 Sum_probs=640.1
Q ss_pred CCCCEEECCCCCCCCCCEEEECCCCCCCHHHHHHCCCCEEEEECCCCCCCCCCCCCEECCCCCCCCCCCCCCCCEECCCE
Q ss_conf 88712323777899992662136558997776521884089983389999999993002479999843689983123850
Q 001452 391 ATSEYIVRDMGNCSPRYMRCTISQIPCTNDLLTTSGMQLALLVQPLALPHPSEEPIQIVDFGDMGPVRCSRCKAYINPFM 470 (1075)
Q Consensus 391 ~~t~~~~~D~GN~sP~yiR~T~~~iP~t~~ll~~~~LPLgivV~Pfa~~~~~e~pipvvd~g~~~pvRC~rCrAYINPf~ 470 (1075)
+++.|++.|+|||+|+|||+|||+||.+++++++++||||++|+||+++.++|+++|+++. .+|+||+||||||||||
T Consensus 165 ~~~~~~~~d~gn~~p~~vR~T~n~iP~t~~l~~~~~lPlg~vv~P~a~~~~~~~~vpvv~~--~~pvRC~rCrAYiNPf~ 242 (926)
T 1m2v_B 165 PERMLVPSELSNASPDYIRSTLNAVPKNSSLLKKSKLPFGLVIRPYQHLYDDIDPPPLNED--GLIVRCRRCRSYMNPFV 242 (926)
T ss_dssp GGGSSSCSSSSSCCTTTEEESBSSEESBHHHHHHHTCCCEEEECSCCSSSTTSSCCCEECS--CCCCBCSSSCCBCCTTC
T ss_pred CCCCCCCCCCCCCCCCCEECCCCCCCCCHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCC--CCCCCCCCCCCEECCCE
T ss_conf 9861114557789988446411447999999972789848998527776667788870389--99973698558816825
Q ss_pred EEEECCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCEEEEEEECCHHHHHHH
Q ss_conf 89806974992479998999733324789998878988987756731899833421137999828999997635588541
Q 001452 471 KFIDQGRRFICSLCGFTDETPRDYHCNLGPDGRRRDADDRPELCRGTVEFVATKEYMVRDPMPAVFFFLIDVSMNALQTG 550 (1075)
Q Consensus 471 ~f~~~Gr~w~CnlC~~~N~vP~~Y~~~ld~~g~R~D~~~RPEL~~gtVEfvap~eY~~R~p~pp~yvFvIDVS~~av~sG 550 (1075)
+|+++|++|+||||+..|++|.+|+ ++.+|+|.|+++||||+++||||+++++|+.|++.|++|+||||||.+++++|
T Consensus 243 ~~~~~g~~W~CnfC~~~N~~P~~Y~--~~~~~~~~d~~~RpEL~~~tvEyi~p~ey~~r~p~ppvyvFvIDvS~~av~~g 320 (926)
T 1m2v_B 243 TFIEQGRRWRCNFCRLANDVPMQMD--QSDPNDPKSRYDRNEIKCAVMEYMAPKEYTLRQPPPATYCFLIDVSQSSIKSG 320 (926)
T ss_dssp EEETTTTEEECTTTCCEEECCGGGT--TTSTTCGGGGGGSHHHHCSEEEEECCGGGCSSCCCCCBEEEEEECSHHHHHSC
T ss_pred EEECCCCEEECCCCCCCCCCCHHHC--CCCCCCCCCCCCCCCCCCCEEEEECCHHHCCCCCCCCEEEEEEECCHHHHHHH
T ss_conf 9937998798547898789966652--45446856401274215762899727021147999868999998977887622
Q ss_pred HHHHHHHHHHHHHHCCCC-CCCCEEEEEEECCEEEEEECCCCCC-------CCEEEECCCCCCCCCCCCCCCEEEHHHHH
Q ss_conf 999999999998852999-9972899999499699995587789-------86286227964334677665404127769
Q 001452 551 ATAAACSAISQVISDLPE-GPRTMVGIATFDSTIHFYNLKRALQ-------QPLMLIVPDVEDVYTPLQSDIIVPVSECR 622 (1075)
Q Consensus 551 ~l~~v~~sI~~~L~~Lp~-~~rt~VGiITFDs~Ihfynl~~~l~-------qpqmlVvsDldd~FvPlp~~lLv~l~Esr 622 (1075)
+++.+|++|+.+|+.||+ +++++|||||||++||||+++.++. +++|+|++|+||+|+|++++||++++|++
T Consensus 321 ~l~~l~~sI~~~L~~LP~~~~~~~VGlITFds~Vh~y~l~~~~~g~k~~~~q~qmlvvsdl~d~f~P~~~~~Lv~l~e~~ 400 (926)
T 1m2v_B 321 LLATTINTLLQNLDSIPNHDERTRISILCVDNAIHYFKIPLDSENNEESADQINMMDIADLEEPFLPRPNSMVVSLKACR 400 (926)
T ss_dssp HHHHHHHHHHHTTTTSCCTTSCCEECEEEESSSEEEEECCCC---------CCEEEEECCCSSCCCSCSSSSSEETTTTH
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEECCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCHHHHH
T ss_conf 99999999999998577878872799999898799995677666774441261211445621146778422133189999
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CC
Q ss_conf 99999995367432478875312899999999998704987999914799867653324543367777888411012-35
Q 001452 623 QHLELLLESIPSMFQNNRTAESAFGAAVKAAFLALKSTGGKLLVFQSVLPSVGIGALSAREAEGRSNISSGEKETHK-LL 701 (1075)
Q Consensus 623 ~~I~~lLe~Lp~~f~~~~~~~~~lG~AL~aA~~lLk~~GGKIivF~ss~Pt~GpGaL~~Re~~~~~~~~~gt~ke~~-Ll 701 (1075)
+.|+++|++|+++|.++++.++|+|+||++|..+|+.+||||++|++++||+|+|+|+.|++.+ +++++||++ ++
T Consensus 401 ~~I~~lLe~L~~~~~~~~~~~~~~G~AL~aA~~lL~~~GGrI~~F~sg~Pt~GpG~l~~re~~~----~~~~~ke~~~ll 476 (926)
T 1m2v_B 401 QNIETLLTKIPQIFQSNLITNFALGPALKSAYHLIGGVGGKIIVVSGTLPNLGIGKLQRRNESG----VVNTSKETAQLL 476 (926)
T ss_dssp HHHHHHHHHHHHHTSSCCCCCCCHHHHHHHHHHHHTTTCEEEEEEESSCCCSSTTCCCCCCC--------CCTTHHHHHT
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCCCC----CCCCCCCHHHHC
T ss_conf 9999999861654047888874289999999999985198899995689977887665663100----168531023313
Q ss_pred CHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCC--CHHHHHHHHHHHCCCCCCCCC
Q ss_conf 405899999999998368199999816874471102444445650699973787666--357899999982168842352
Q 001452 702 QPADKTLKAMAIEFAEYQVCVDVFITTQTYVDIASISVIPKTTGGQVYYYYPFSALS--DPAKLYNDLRWNITRPQGFEA 779 (1075)
Q Consensus 702 ~p~~~fYk~LA~~~~~~gIsVDlFl~s~~yvDiatL~~L~~~TGG~v~~Y~~F~~~~--d~~kL~~dL~r~Ltr~~g~ea 779 (1075)
+++++||++||++|++++|+||||+++.+|+|+++|+.|++.|||.+++|++|+..+ |..+|.+||.+.|++++||+|
T Consensus 477 ~~a~~FYk~LA~~~~~~gisVDlF~~s~~~vdla~l~~l~~~TGG~v~~y~~F~~~~~~d~~kf~~dl~~~Lt~~~gf~a 556 (926)
T 1m2v_B 477 SCQDSFYKNFTIDCSKVQITVDLFLASEDYMDVASLSNLSRFTAGQTHFYPGFSGKNPNDIVKFSTEFAKHISMDFCMET 556 (926)
T ss_dssp SCSSTHHHHHHHHHHHHTEEEEEEEEESSCCCHHHHHHHHHTTTCCEEEEESCCTTSHHHHHHHHHHHHHHHHSCCEEEE
T ss_pred CCHHHHHHHHHHHHHHCCEEEEEEECCCCCCCHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCEEE
T ss_conf 51079999999999976937999973687768388887876379669981887621266799999999977554300347
Q ss_pred EEEEEECCCCEEEEEECCCCCCCCCCEEECCCCCCCEEEEEEEECCCCCCCCCEEEEEEEEEEECCCCEEEEEEECCCCC
Q ss_conf 27999479916974327722479982262478999739999981488799981289999998842883999999034577
Q 001452 780 VMRVRCSQGIQVQEYHGNFCKRIPTDIDLPAIDCNKAIMVTLKHDDKLQDGSECAFQCALLYTTVYGQRRIRVTTLSLPC 859 (1075)
Q Consensus 780 ~lRVRcS~GL~V~~~~Gnf~~rs~~~~~lp~id~dtSi~veL~~d~~L~~~~~~yiQ~AlLYTs~~GeRRIRV~Tl~lpV 859 (1075)
+||||||+||+|+++||||+.+++++|+|+++++|+||+|+|++++++. +..+|||+|++||+.+|+|||||||++++|
T Consensus 557 ~mrVR~S~glkv~~~~G~~~~~~s~~~~l~~l~~d~s~av~f~~~~~l~-~~~~~~Q~allYT~~~G~RRiRV~T~~l~v 635 (926)
T 1m2v_B 557 VMRARGSTGLRMSRFYGHFFNRSSDLCAFSTMPRDQSYLFEVNVDESIM-ADYCYVQVAVLLSLNNSQRRIRIITLAMPT 635 (926)
T ss_dssp EEEEEECTTEEEEEEESSSBCSSTTEEEEEEECSSCCEEEEEEECSBCC-SSEEEEEEEEEEEETTTEEEEEEEEEEEEE
T ss_pred EEEEEECCCCEEEEEECCCCCCCCCCEEEECCCCCCEEEEEEEECCCCC-CCCEEEEEEEEEECCCCCEEEEEEEECCCC
T ss_conf 9999807980798743672446767667305688877999999656778-885799999988869997899999405556
Q ss_pred CCCHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC--CCCCHHHCCHHHHHHH
Q ss_conf 78977898605555799999999998449999799999999999999999986204679997--4335021040999999
Q 001452 860 TSNLSNLYRSADLDTQFTCFMKQAASEIPSTPLANVREQMMNLCVNALVSYRKFCATVSSSG--QLILPEALKLLPLYTL 937 (1075)
Q Consensus 860 ts~l~~vf~~aD~dAi~~~laK~a~~~~l~~~l~d~R~~l~~~lv~iL~~YRk~ca~~~s~g--QLiLPesLKlLPlyil 937 (1075)
++++.++|+++|++|++++|+|+++++++++++.|+|++|+++|+++|+.|||+|+..++.+ +|+||++||+||+|++
T Consensus 636 t~~l~~v~~s~Dqea~~~llar~av~~~~~~~~~d~r~~L~~~li~il~~Yrk~~~~~~~~~~~sl~Lp~~lkllP~~~~ 715 (926)
T 1m2v_B 636 TESLAEVYASADQLAIASFYNSKAVEKALNSSLDDARVLINKSVQDILATYKKEIVVSNTAGGAPLRLCANLRMFPLLMH 715 (926)
T ss_dssp ESCHHHHHHTBCHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHHHHTCCCTTSSSSCCEEEGGGTTHHHHHH
T ss_pred CCCHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 68899999852999999999999998763088999999999999999999864144456777753206778999999999
Q ss_pred HHHCCCCCC-CCCCCHHHHHHHHHHCCCCHHHHCCCCCCEEEEECCCCCC------------CCCCCCCCCCCCCCCCCC
Q ss_conf 862014989-9999039999999981799101000212118980149999------------999789974237411136
Q 001452 938 ALIKSTGLR-TDGRIDDRSFWITYVSSVSIPFAVPFVYPRMVAIHDLDKG------------EDGSIIPPFLPLSSEHVS 1004 (1075)
Q Consensus 938 ~LlKs~~Lr-~~vs~DeR~~~~~~l~s~~v~~l~~~lYPrL~~lh~l~~~------------~~~~~lP~~l~LS~e~L~ 1004 (1075)
+|+||.+|+ .+++.|||+|++++++++++..++.|+||+||++|++..+ ++++.+|++++||.++|+
T Consensus 716 ~L~KS~~l~~~~~p~Dera~~~~~l~~~~~~~l~~~iyP~L~s~h~~~~~~g~~~~~~~~~~~~~~~~P~~l~Ls~~~l~ 795 (926)
T 1m2v_B 716 SLTKHMAFRSGIVPSDHRASALNNLESLPLKYLIKNIYPDVYSLHDMADEAGLPVQTEDGEATGTIVLPQPINATSSLFE 795 (926)
T ss_dssp HHHTSTTTCSSCCCHHHHHHHHHHHHHSCHHHHHHHHSCEEEETTTCCSSCSCC---------CCCCCCCCBCSCSTTCC
T ss_pred HHHCCHHHCCCCCCCCHHHHHHHHHHCCCHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHC
T ss_conf 98615410799989139999999998599999997406768970357501266433445555565356874067699836
Q ss_pred CCCEEEEECCCEEEEEECCCCCHHHHHHHHCCCCCCCCC-CCCCCCCC-CCHHHHHHHHHHHHHHHHCC
Q ss_conf 872799975976999957988799999760999888989-72024788-99879999999999997215
Q 001452 1005 DEGIYLLENGEDALIYIGSSVDSSILHQLFGISSVDEVP-TQFVLQQY-DNPLSKKLNDVVNEIRRQRC 1071 (1075)
Q Consensus 1005 ~~GiYLLDnG~~i~LwvG~~v~~~ll~~LFGv~s~~~i~-~~~~Lp~~-dt~~s~~l~~iI~~lr~~r~ 1071 (1075)
++|+||||+|..+|||+|+++++++++||||++++.+++ ....|+++ ||++|+|||+||++||++|.
T Consensus 796 ~~g~yLld~G~~i~lWvG~~~~p~ll~dlFg~~~~~~i~~~~~~lp~l~~~~~s~~lr~iI~~lr~~r~ 864 (926)
T 1m2v_B 796 RYGLYLIDNGNELFLWMGGDAVPALVFDVFGTQDIFDIPIGKQEIPVVENSEFNQRVRNIINQLRNHDD 864 (926)
T ss_dssp TTCEEEEECSSEEEEEECTTCCSGGGC-------------------------CHHHHHHHHHHTTCCSS
T ss_pred CCCEEEEECCCEEEEEECCCCCHHHHHHHHCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCC
T ss_conf 698899987988999966889979999872887354447432447667898699999999999997578
No 5
>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A
Probab=1.00 E-value=1 Score=1326.87 Aligned_cols=689 Identities=27% Similarity=0.522 Sum_probs=647.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCEEEECCCCCCCHHHHHHCCCCEEEEECCC
Q ss_conf 99999999999975698410135799989999998871232377789999266213655899777652188408998338
Q 001452 357 SSKIDPQQIPRPVPSSTVVLYDTREGNQANPPPPATSEYIVRDMGNCSPRYMRCTISQIPCTNDLLTTSGMQLALLVQPL 436 (1075)
Q Consensus 357 ~~~idp~~iP~P~~~~~~~~~~t~~~~~~~~PP~~~t~~~~~D~GN~sP~yiR~T~~~iP~t~~ll~~~~LPLgivV~Pf 436 (1075)
+..|+..++|+|... +++++.|++.|+|||+|+|||+|||+||.+++++++++||||++|+||
T Consensus 32 ~~~~~~~~~p~p~~~-----------------~~~~~~~~~~d~~n~~p~~vR~T~n~iP~t~~~~~~~~lPlg~vv~P~ 94 (810)
T 1pcx_A 32 PPPITDLTLPPPPLV-----------------IPPERMLVPSELSNASPDYIRSTLNAVPKNSSLLKKSKLPFGLVIRPY 94 (810)
T ss_dssp SCCGGGGGSCCCCCC-----------------CCGGGSSSCSGGGSCCTTTEEESBSSEESSHHHHHHHTCCCEEEECSC
T ss_pred CCCCCCCCCCCCCCC-----------------CCCCCCCCCCCCCCCCCCCEEEECCCCCCCHHHHHHCCCCEEEEEECC
T ss_conf 999971349999777-----------------899871104557789988246321447999999972799859999617
Q ss_pred CCCCCCCCCCEECCCCCCCCCCCCCCCCEECCCEEEEECCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99999999930024799998436899831238508980697499247999899973332478999887898898775673
Q 001452 437 ALPHPSEEPIQIVDFGDMGPVRCSRCKAYINPFMKFIDQGRRFICSLCGFTDETPRDYHCNLGPDGRRRDADDRPELCRG 516 (1075)
Q Consensus 437 a~~~~~e~pipvvd~g~~~pvRC~rCrAYINPf~~f~~~Gr~w~CnlC~~~N~vP~~Y~~~ld~~g~R~D~~~RPEL~~g 516 (1075)
+.+.++|+++|+++. .+|+||+||||||||||+|+++|++|+||||+..|++|.+|+ .+++|+|.|+++||||+++
T Consensus 95 ~~~~~~~~~~pvv~~--~~pvRC~~CrayiNPf~~~~~~g~~W~C~~C~~~N~~P~~y~--~~~~~~~~d~~~RpEL~~~ 170 (810)
T 1pcx_A 95 QHLYDDIDPPPLNED--GLIVRCRRCRSYMNPFVTFIEQGRRWRCNFCRLANDVPMQMD--QSDPNDPKSRYDRNEIKCA 170 (810)
T ss_dssp CSSSTTSSCCCEECS--CCCCBCTTTCCBCCTTCEEETTTTEEECTTTCCEEECCGGGG--C-----CCCGGGSHHHHCS
T ss_pred CCCCCCCCCCCCCCC--CCCCCCCCCCCEECCCEEEECCCCEEECCCCCCCCCCCHHHC--CCCCCCCCCCCCCCCCCCC
T ss_conf 766667888870389--999736985588068259937998798557898589966651--4544685640127422576
Q ss_pred CEEEEECCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCC-CCCCEEEEEEECCEEEEEECCCCCC--
Q ss_conf 1899833421137999828999997635588541999999999998852999-9972899999499699995587789--
Q 001452 517 TVEFVATKEYMVRDPMPAVFFFLIDVSMNALQTGATAAACSAISQVISDLPE-GPRTMVGIATFDSTIHFYNLKRALQ-- 593 (1075)
Q Consensus 517 tVEfvap~eY~~R~p~pp~yvFvIDVS~~av~sG~l~~v~~sI~~~L~~Lp~-~~rt~VGiITFDs~Ihfynl~~~l~-- 593 (1075)
||||+++++|+.|++.||+|+||||||.+++++|+++.+|++|+.+|+.||+ +++++|||||||++||||+++.++.
T Consensus 171 tvEy~~p~~y~~~~p~pp~yvFvIDvs~~av~~g~l~~~~~si~~~L~~Lp~~~~~~~VGlITfd~~V~~~~l~~~~~g~ 250 (810)
T 1pcx_A 171 VMEYMAPKEYTLRQPPPATYCFLIDVSQSSIKSGLLATTINTLLQNLDSIPNHDERTRISILCVDNAIHYFKIPLDSENN 250 (810)
T ss_dssp EEEEECCGGGCSSCCCCCEEEEEEECSHHHHHHTHHHHHHHHHHHHTTTSCCTTSCCEEEEEEESSSEEEEECCCGGGC-
T ss_pred EEEEECCCHHCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEECCCCCCCC
T ss_conf 39998270211479998689999989768876129999999999999857777877379999989879999567655676
Q ss_pred -----CCEEEECCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf -----862862279643346776654041277699999999536743247887531289999999999870498799991
Q 001452 594 -----QPLMLIVPDVEDVYTPLQSDIIVPVSECRQHLELLLESIPSMFQNNRTAESAFGAAVKAAFLALKSTGGKLLVFQ 668 (1075)
Q Consensus 594 -----qpqmlVvsDldd~FvPlp~~lLv~l~Esr~~I~~lLe~Lp~~f~~~~~~~~~lG~AL~aA~~lLk~~GGKIivF~ 668 (1075)
+++|++++|+||+|+|++++||++++|+++.|+++|++|+.+|.++++.++|+|+||++|..+|+..||||++|+
T Consensus 251 k~~~~q~~mlvv~dl~d~f~P~~~~~Lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~a~G~AL~~A~~lL~~~GGrI~~F~ 330 (810)
T 1pcx_A 251 EESADQINMMDIADLEEPFLPRPNSMVVSLKACRQNIETLLTKIPQIFQSNLITNFALGPALKSAYHLIGGVGGKIIVVS 330 (810)
T ss_dssp ------CEEECCCCTTCC-----TTTSEETTTTHHHHHHHHHHHHHHTTTCCCCCCCHHHHHHHHHHHHTTTCEEEEEEE
T ss_pred CCCCCCHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 44202612103356000367773011665899999999999854343057888875189999999999874298899995
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCE
Q ss_conf 4799867653324543367777888411012-354058999999999983681999998168744711024444456506
Q 001452 669 SVLPSVGIGALSAREAEGRSNISSGEKETHK-LLQPADKTLKAMAIEFAEYQVCVDVFITTQTYVDIASISVIPKTTGGQ 747 (1075)
Q Consensus 669 ss~Pt~GpGaL~~Re~~~~~~~~~gt~ke~~-Ll~p~~~fYk~LA~~~~~~gIsVDlFl~s~~yvDiatL~~L~~~TGG~ 747 (1075)
+++||+|+|+|+.|++.+ +++++||+. +++++++||++||++|+++||+||+|+++.+|+|+++|+.|++.|||.
T Consensus 331 sg~pt~GpG~l~~r~~~~----~~~~~ke~~~l~~~a~~fY~~la~~~~~~gi~VDlF~~s~~~~dla~l~~l~~~TGG~ 406 (810)
T 1pcx_A 331 GTLPNLGIGKLQRRNESG----VVNTSKETAQLLSCQDSFYKNFTIDCSKVQITVDLFLASEDYMDVASLSNLSRFTAGQ 406 (810)
T ss_dssp SSCCCSSTTCCCC------------------------CCHHHHHHHHHHHTTEEEEEEEEESSCCCHHHHHHHHHTTTCC
T ss_pred CCCCCCCCCCCCCCCCCC----CCCCCCCHHHHCCCCHHHHHHHHHHHHHCCEEEEEEECCCCCCCHHHHHHHHHCCCCE
T ss_conf 679977887666653100----1686310123136216999999999997793899998168765859998777537967
Q ss_pred EEEECCCCCCC--CHHHHHHHHHHHCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCCCEEECCCCCCCEEEEEEEECC
Q ss_conf 99973787666--3578999999821688423522799947991697432772247998226247899973999998148
Q 001452 748 VYYYYPFSALS--DPAKLYNDLRWNITRPQGFEAVMRVRCSQGIQVQEYHGNFCKRIPTDIDLPAIDCNKAIMVTLKHDD 825 (1075)
Q Consensus 748 v~~Y~~F~~~~--d~~kL~~dL~r~Ltr~~g~ea~lRVRcS~GL~V~~~~Gnf~~rs~~~~~lp~id~dtSi~veL~~d~ 825 (1075)
+++|++|+..+ |..+|.+||.+.|++++||+|+||||||+||+|+++||||+.+++++|+++++++|++|+|+|++++
T Consensus 407 v~~y~~F~~~~~~d~~~f~~dl~~~l~~~~gf~a~mrVR~S~gl~v~~~~G~~~~~~~~~~~l~~~~~d~s~~v~f~~~~ 486 (810)
T 1pcx_A 407 THFYPGFSGKNPNDIVKFSTEFAKHISMDFCMETVMRARGSTGLRMSRFYGHFFNRSSDLCAFSTMPRDQSYLFEVNVDE 486 (810)
T ss_dssp EEEEETCCTTSHHHHHHHHHHHHHHHHCCCCEEEEEEEEECTTEEEEEEESSSBCSSSSEEEESSCCSSCCEEEEEEECS
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHHHHHHCCEEEEEEEECCCCEEEEEEECCCCCCCCCCEEEECCCCCCEEEEEEEECC
T ss_conf 99828975123677999999999876542030279999807980798744672546767668305798877999999656
Q ss_pred CCCCCCCEEEEEEEEEEECCCCEEEEEEECCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Q ss_conf 87999812899999988428839999990345777897789860555579999999999844999979999999999999
Q 001452 826 KLQDGSECAFQCALLYTTVYGQRRIRVTTLSLPCTSNLSNLYRSADLDTQFTCFMKQAASEIPSTPLANVREQMMNLCVN 905 (1075)
Q Consensus 826 ~L~~~~~~yiQ~AlLYTs~~GeRRIRV~Tl~lpVts~l~~vf~~aD~dAi~~~laK~a~~~~l~~~l~d~R~~l~~~lv~ 905 (1075)
++. +..+|||+|++||+.+|+|||||||+++++++++.++|+++|++|++++|+|+++.+++++++.++|++|+++|++
T Consensus 487 ~l~-~~~~~~Q~allYt~~~G~RRiRV~T~~~~vt~~~~~v~~~~Dqea~~~llar~av~~~~~~~~~d~r~~l~~~li~ 565 (810)
T 1pcx_A 487 SIM-ADYCYVQVAVLLSLNNSQRRIRIITLAMPTTESLAEVYASADQLAIASFYNSKAVEKALNSSLDDARVLINKSVQD 565 (810)
T ss_dssp CCC-SSEEEEEEEEEEECTTSCEEEEEEEEEEEEESCHHHHHHTBCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCC-CCCEEEEEEEEEECCCCCEEEEEEECCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 778-8867999999888699978999991375566889999973599999999999999876208999999999999999
Q ss_pred HHHHHHHHCCCCCCCC--CCCCHHHCCHHHHHHHHHHCCCCCC-CCCCCHHHHHHHHHHCCCCHHHHCCCCCCEEEEECC
Q ss_conf 9999986204679997--4335021040999999862014989-999903999999998179910100021211898014
Q 001452 906 ALVSYRKFCATVSSSG--QLILPEALKLLPLYTLALIKSTGLR-TDGRIDDRSFWITYVSSVSIPFAVPFVYPRMVAIHD 982 (1075)
Q Consensus 906 iL~~YRk~ca~~~s~g--QLiLPesLKlLPlyil~LlKs~~Lr-~~vs~DeR~~~~~~l~s~~v~~l~~~lYPrL~~lh~ 982 (1075)
+|+.|||+|+..++++ +|+||++||+||+|+++|+||.+|+ .+++.|||+|++++++++++..++.|+||+||++|+
T Consensus 566 il~~Yrk~~~~~~~~~~~~l~lp~~lkllP~~~~~L~ks~~l~~~~~p~Der~~~~~~l~~~~~~~~~~~iyP~L~~~~~ 645 (810)
T 1pcx_A 566 ILATYKKEIVVSNTAGGAPLRLCANLRMFPLLMHSLTKHMAFRSGIVPSDHRASALNNLESLPLKYLIKNIYPDVYSLHD 645 (810)
T ss_dssp HHHHHHHHCC----CCSSCCEEEGGGTTHHHHHHHHHTSTTTCSSCCCHHHHHHHHHHHHHSCHHHHHHHHSCEEEECTT
T ss_pred HHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHCCCCCCCCCHHHHHHHHHHCCCHHHHHHHCCCEEEEECC
T ss_conf 99998642544567777532167789999999999861641079998913999999999859999998741677898036
Q ss_pred CCCC------------CCCCCCCCCCCCCCCCCCCCCEEEEECCCEEEEEECCCCCHHHHHHHHCCCCCCCCC-CCCCCC
Q ss_conf 9999------------999789974237411136872799975976999957988799999760999888989-720247
Q 001452 983 LDKG------------EDGSIIPPFLPLSSEHVSDEGIYLLENGEDALIYIGSSVDSSILHQLFGISSVDEVP-TQFVLQ 1049 (1075)
Q Consensus 983 l~~~------------~~~~~lP~~l~LS~e~L~~~GiYLLDnG~~i~LwvG~~v~~~ll~~LFGv~s~~~i~-~~~~Lp 1049 (1075)
+..+ ++++.+|++++||.++|+++|+||||+|..+|||+|++++++++++|||++++.+++ ....|+
T Consensus 646 ~~~~~g~~~~~~~~~~~~~~~~P~~l~Ls~~~l~~~g~yLld~G~~i~lwvg~~~~~~l~~~lFg~~~~~~~~~~~~~lp 725 (810)
T 1pcx_A 646 MADEAGLPVQTEDGEATGTIVLPQPINATSSLFERYGLYLIDNGNELFLWMGGDAVPALVFDVFGTQDIFDIPIGKQEIP 725 (810)
T ss_dssp CCSSTTSBC--------CCBCCCCBCCSSTTSCCTTCEEEEECSSEEEEEECTTCCHHHHHHHHSCSCGGGSCCEECCCC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCEEEEECCCEEEEEECCCCCHHHHHHHHCCCCHHHCCCCCCCCC
T ss_conf 75012665334455555653568742687998276988999889899999689999799998708984554474335577
Q ss_pred CC-CCHHHHHHHHHHHHHHHHCC
Q ss_conf 88-99879999999999997215
Q 001452 1050 QY-DNPLSKKLNDVVNEIRRQRC 1071 (1075)
Q Consensus 1050 ~~-dt~~s~~l~~iI~~lr~~r~ 1071 (1075)
++ ||++|+|||+||+++|++|.
T Consensus 726 ~~~~~~~~~~l~~iI~~lr~~r~ 748 (810)
T 1pcx_A 726 VVENSEFNQRVRNIINQLRNHDD 748 (810)
T ss_dssp CCSSCHHHHHHHHHHHHHHCCSS
T ss_pred CCCCCHHHHHHHHHHHHHHHHCC
T ss_conf 67898589999999999997578
No 6
>2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A
Probab=1.00 E-value=1 Score=1101.03 Aligned_cols=630 Identities=19% Similarity=0.275 Sum_probs=554.6
Q ss_pred CCCEEECCCCCCCCCCEEEECCCCCCCHHHHHHCCCCEEEEECCCCCCCCCCCCCEECCCCCCCCCCCCC--CCCEECCC
Q ss_conf 8712323777899992662136558997776521884089983389999999993002479999843689--98312385
Q 001452 392 TSEYIVRDMGNCSPRYMRCTISQIPCTNDLLTTSGMQLALLVQPLALPHPSEEPIQIVDFGDMGPVRCSR--CKAYINPF 469 (1075)
Q Consensus 392 ~t~~~~~D~GN~sP~yiR~T~~~iP~t~~ll~~~~LPLgivV~Pfa~~~~~e~pipvvd~g~~~pvRC~r--CrAYINPf 469 (1075)
..+|...|++||+|+|||+|||+||.+++++++++||||++|+||++. +++|++++ +|+||+| ||||||||
T Consensus 5 ~~~~~~~~~~n~~~~~vR~T~n~~P~t~~~~~~~~lPlg~vi~P~~~~----~~~p~v~~---~pvRC~~~~CrayiNPf 77 (769)
T 2nut_A 5 MTTYLEFIQQNEERDGVRFSWNVWPSSRLEATRMVVPVAALFTPLKER----PDLPPIQY---EPVLCSRTTCRAVLNPL 77 (769)
T ss_dssp --CHHHHHHHHHHHHSEEESBSSBCSSHHHHTTCSSCCEEEECTTCCC----SCCCCBCS---CCCBCSSTTCCCBCCTT
T ss_pred CCCHHHHHCCCCCCCCCCCEECCCCCCHHHHHCCCCCEEEEEEECCCC----CCCCCCCC---CCCCCCCCCCCEEECCC
T ss_conf 554433432568988420530467898688732567769999618888----88985888---99767999987397884
Q ss_pred EEEEECCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCEEEEECCCCCCCCCCCCEEEEEEECCHHHH
Q ss_conf 08980697499247999899973332478999887898898775--6731899833421137999828999997635588
Q 001452 470 MKFIDQGRRFICSLCGFTDETPRDYHCNLGPDGRRRDADDRPEL--CRGTVEFVATKEYMVRDPMPAVFFFLIDVSMNAL 547 (1075)
Q Consensus 470 ~~f~~~Gr~w~CnlC~~~N~vP~~Y~~~ld~~g~R~D~~~RPEL--~~gtVEfvap~eY~~R~p~pp~yvFvIDVS~~av 547 (1075)
|+|+++|++|+||||+..|++|.+|+ +++. .++|||| +++||||+++++| +.+|+|+||||||.+++
T Consensus 78 ~~~~~~~~~W~C~~C~~~N~~P~~Y~-~~~~------~~~~pEL~p~~~tvEy~~~~~~----p~pp~~vFvIDvS~~a~ 146 (769)
T 2nut_A 78 CQVDYRAKLWACNFCYQRNQFPPSYA-GISE------LNQPAELLPQFSSIEYVVLRGP----QMPLIFLYVVDTCMEDE 146 (769)
T ss_dssp SEEETTTTEEECSSSCCEEECCGGGT-TCBT------TBCCGGGSGGGSSEEEEECSSC----CCCCEEEEEEECCSCHH
T ss_pred EEEECCCCEEECCCCCCCCCCCHHHC-CCCC------CCCCHHHCCCCCCEEEECCCCC----CCCCEEEEEEECCCCHH
T ss_conf 59937999799138998789986772-5774------5689656378986798736888----99978999998875588
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEECCCCC---------------CCCE-EEECCC----C----
Q ss_conf 541999999999998852999997289999949969999558778---------------9862-862279----6----
Q 001452 548 QTGATAAACSAISQVISDLPEGPRTMVGIATFDSTIHFYNLKRAL---------------QQPL-MLIVPD----V---- 603 (1075)
Q Consensus 548 ~sG~l~~v~~sI~~~L~~Lp~~~rt~VGiITFDs~Ihfynl~~~l---------------~qpq-mlVvsD----l---- 603 (1075)
+ ++.+|++|+.+|+.||++ ++|||||||++||||+++..+ +|++ |++++| +
T Consensus 147 ~---l~~l~~si~~~L~~Lp~~--~~VGlITf~~~v~~y~l~~~~~~~~~vf~G~k~~~~~q~~~ml~v~d~~~~~~~~~ 221 (769)
T 2nut_A 147 D---LQALKESMQMSLSLLPPT--ALVGLITFGRMVQVHELGCEGISKSYVFRGTKDLSAKQLQEMLGLSKVPVTQATRG 221 (769)
T ss_dssp H---HHHHHHHHHHHHTTSCTT--CEEEEEEESSEEEEEESSCCSSCEEEEEETTSCCCSHHHHHHHC------------
T ss_pred H---HHHHHHHHHHHHHHCCCC--CEEEEEEECCEEEEEECCCCCCCCCEEECCCCCCCHHHHHHHHCCCCCCCCCCCCC
T ss_conf 9---999999999999848998--46999996877999967888776302405876565778999858787665544555
Q ss_pred -CCCC-CCCCCCCEEEHHHHHHHHHHHHHHCCC---CCCCCCCCCCHHHHHHHHHHHHHH----HCCCEEEEEECCCCCC
Q ss_conf -4334-677665404127769999999953674---324788753128999999999987----0498799991479986
Q 001452 604 -EDVY-TPLQSDIIVPVSECRQHLELLLESIPS---MFQNNRTAESAFGAAVKAAFLALK----STGGKLLVFQSVLPSV 674 (1075)
Q Consensus 604 -dd~F-vPlp~~lLv~l~Esr~~I~~lLe~Lp~---~f~~~~~~~~~lG~AL~aA~~lLk----~~GGKIivF~ss~Pt~ 674 (1075)
+|+| +|+ ++||++++|+++.|+++|++|+. ++.++++.++|+|+||++|..+|+ .+||||++|++++||+
T Consensus 222 ~~~~f~~p~-~~~lv~~~e~~~~i~~lLe~L~~~~~~~~~~~~~~~a~G~Al~~A~~lL~~~~~~~GGrI~~F~sg~pt~ 300 (769)
T 2nut_A 222 PQVQQPPPS-NRFLQPVQKIDMNLTDLLGELQRDPWPVPQGKRPLRSSGVALSIAVGLLECTFPNTGARIMMFIGGPATQ 300 (769)
T ss_dssp -------CC-CSSSEEHHHHHHHHHHHHHHCCCCSSCCCTTBCCCCCHHHHHHHHHHHHHHHSCSSCCEEEEEESSCCCS
T ss_pred CCCCCCCCC-CCEEEEHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCC
T ss_conf 565677761-0102218999999999998653244565678887630689999999997411367885899996789977
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCC-CCCCCHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCEEEEECC
Q ss_conf 76533245433677778884110-12354058999999999983681999998168744711024444456506999737
Q 001452 675 GIGALSAREAEGRSNISSGEKET-HKLLQPADKTLKAMAIEFAEYQVCVDVFITTQTYVDIASISVIPKTTGGQVYYYYP 753 (1075)
Q Consensus 675 GpGaL~~Re~~~~~~~~~gt~ke-~~Ll~p~~~fYk~LA~~~~~~gIsVDlFl~s~~yvDiatL~~L~~~TGG~v~~Y~~ 753 (1075)
|+|+|+.|++......+.+++|| +++++++++||++||++|+++||+||+|+++.+|+|+++|+.|++.|||.+|+|++
T Consensus 301 GpG~l~~r~~~~~~rs~~d~~ke~~~~~~~a~~fY~~la~~~~~~gi~VDlF~~~~~~vdla~l~~l~~~TGG~~~~~~~ 380 (769)
T 2nut_A 301 GPGMVVGDELKTPIRSWHDIDKDNAKYVKKGTKHFEALANRAATTGHVIDIYACALDQTGLLEMKCCPNLTGGYMVMGDS 380 (769)
T ss_dssp SSSCCSCSBTTSCCCCHHHHHTTCCTTHHHHHHHHHHHHHHHHHHTCEEEEEEECSSCCCHHHHTHHHHHSSCCEEEESC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHCCEEEEEEECCCCCCCHHHHHHHHHCCCCEEEECCC
T ss_conf 88777574432223443566421234325058999999999997796999996267766808887776637955998389
Q ss_pred CCCCCCHHHHHHHHHHHCCC------CCCCCCEEEEEECCCCEEEEEECCCC---------------CCCCCCEEECCCC
Q ss_conf 87666357899999982168------84235227999479916974327722---------------4799822624789
Q 001452 754 FSALSDPAKLYNDLRWNITR------PQGFEAVMRVRCSQGIQVQEYHGNFC---------------KRIPTDIDLPAID 812 (1075)
Q Consensus 754 F~~~~d~~kL~~dL~r~Ltr------~~g~ea~lRVRcS~GL~V~~~~Gnf~---------------~rs~~~~~lp~id 812 (1075)
|+.+ +|..+|+|.+++ ++||+|+||||||+||+|+++|||++ .+++++|+++++|
T Consensus 381 F~~~----~~~~~l~~~~~~~~~~~l~~gf~a~mrVr~S~gl~v~~~~G~~~~~~~~~~~vsd~~~g~~~t~~~~l~~~~ 456 (769)
T 2nut_A 381 FNTS----LFKQTFQRVFTKDMHGQFKMGFGGTLEIKTSREIKISGAIGPCVSLNSKGPCVSENEIGTGGTCQWKICGLS 456 (769)
T ss_dssp SSSH----HHHHHHHHTTCBCTTSCBSCEEEEEEEEEECTTEEEEEEESSCEECCCCCTTBCSSCCSBCSCSEEEEEEEC
T ss_pred CCHH----HHHHHHHHHHHHHCCCCCCEEEEEEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCEECCCCCCEEEEECCC
T ss_conf 8446----689999999865304564357779999996698279864436303565567656412136787507840679
Q ss_pred CCCEEEEEEEECCC----CCCCCCEEEEEEEEEEECCCCEEEEEEECCCCCCCCH---HHHHHHCCHHHHHHHHHHHHHH
Q ss_conf 99739999981488----7999812899999988428839999990345777897---7898605555799999999998
Q 001452 813 CNKAIMVTLKHDDK----LQDGSECAFQCALLYTTVYGQRRIRVTTLSLPCTSNL---SNLYRSADLDTQFTCFMKQAAS 885 (1075)
Q Consensus 813 ~dtSi~veL~~d~~----L~~~~~~yiQ~AlLYTs~~GeRRIRV~Tl~lpVts~l---~~vf~~aD~dAi~~~laK~a~~ 885 (1075)
+|++|+|+|+++++ +.++..+|||+|++||+.+|+|||||||+++++++++ .++|+++|++|++++|+|+++.
T Consensus 457 ~d~s~~v~f~~~~~~~~~l~~~~~~~~Q~a~lYt~~~G~rRiRV~T~~~~~t~~~~~~~~v~~~~Dqea~~~llar~a~~ 536 (769)
T 2nut_A 457 PTTTLAIYFEVVNQHNAPIPQGGRGAIQFVTQYQHSSGQRRIRVTTIARNWADAQTQIQNIAASFDQEAAAILMARLAIY 536 (769)
T ss_dssp TTCCEEEEEEEC----------CCEEEEEEEEEEETTSCEEEEEEEEEECBCCGGGHHHHHHHTBCHHHHHHHHHHHHHH
T ss_pred CCCEEEEEEEECCCCCCCCCCCCEEEEEEEEEEECCCCCEEEEEEEECCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf 88779999996475566667887289999999997999889999943211357754379999754999999999999998
Q ss_pred HCCCCCHHHHHHHHHHHHHHH---HHHHHHHCCCCCCCCCCCCHHHCCHHHHHHHHHHCCCCCC-CCCCCHHHHHHHHHH
Q ss_conf 449999799999999999999---9999862046799974335021040999999862014989-999903999999998
Q 001452 886 EIPSTPLANVREQMMNLCVNA---LVSYRKFCATVSSSGQLILPEALKLLPLYTLALIKSTGLR-TDGRIDDRSFWITYV 961 (1075)
Q Consensus 886 ~~l~~~l~d~R~~l~~~lv~i---L~~YRk~ca~~~s~gQLiLPesLKlLPlyil~LlKs~~Lr-~~vs~DeR~~~~~~l 961 (1075)
+++++++.|+|++|+++++++ +..|||.| +++|+|||+||+||+|+++|+||.+|+ .++++|||+++++++
T Consensus 537 ~~~~~~~~d~~~~ld~~li~l~~~~~~Yrk~~-----~~sl~lp~~lkllP~~~~~L~ks~~l~~~~~spDer~~~~~~l 611 (769)
T 2nut_A 537 RAETEEGPDVLRWLDRQLIRLCQKFGEYHKDD-----PSSFRFSETFSLYPQFMFHLRRSSFLQVFNNSPDESSYYRHHF 611 (769)
T ss_dssp HHTTC---CHHHHHHHHHHHHHHHHCBCCTTC-----GGGCBCCTTTTTHHHHHHHHHHSTTTCCTTSCHHHHHHHHHHH
T ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC-----CCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 75128789999999999999999999985769-----6333066779999999999856410278998822999999999
Q ss_pred CCCCHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCEEEEEECCCCCHHHHHHHHC-CCCCC
Q ss_conf 17991010002121189801499999997899742374111368727999759769999579887999997609-99888
Q 001452 962 SSVSIPFAVPFVYPRMVAIHDLDKGEDGSIIPPFLPLSSEHVSDEGIYLLENGEDALIYIGSSVDSSILHQLFG-ISSVD 1040 (1075)
Q Consensus 962 ~s~~v~~l~~~lYPrL~~lh~l~~~~~~~~lP~~l~LS~e~L~~~GiYLLDnG~~i~LwvG~~v~~~ll~~LFG-v~s~~ 1040 (1075)
+++++..++.|+||+||++|... .|++++||.++|+++||||||+|+.++||+|+.++ +|++.-|- .+..+
T Consensus 612 ~~~~~~~~~~~iyP~L~~~~~~~-------~P~~v~ls~~~l~~~gi~LLD~g~~i~i~~G~~v~-~w~~~~~~~~p~~~ 683 (769)
T 2nut_A 612 MRQDLTQSLIMIQPILYAYSFSG-------PPEPVLLDSSSILADRILLMDTFFQILIYHGETIA-QWRKSGYQDMPEYE 683 (769)
T ss_dssp TTCCHHHHHHHHSCEEEEECSSS-------SCEECCSSGGGCCTTCEEEEECSSEEEEEECHHHH-HHHHHTTTTSGGGH
T ss_pred HCCCHHHHHHHHCCEEEECCCCC-------CCCCEECCHHHCCCCCEEEEECCCEEEEEECCCCH-HHHHCCCCCCCHHH
T ss_conf 75999999875467788636889-------89754187998167978999789899999777526-78727998882156
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC
Q ss_conf 98972024788998799999999999972159
Q 001452 1041 EVPTQFVLQQYDNPLSKKLNDVVNEIRRQRCS 1072 (1075)
Q Consensus 1041 ~i~~~~~Lp~~dt~~s~~l~~iI~~lr~~r~~ 1072 (1075)
++ .++-...+..+++++++|-.
T Consensus 684 ~~----------~~~l~~p~~~a~~i~~~R~p 705 (769)
T 2nut_A 684 NF----------RHLLQAPVDDAQEILHSRFP 705 (769)
T ss_dssp HH----------HHHHHHHHHHHHHHHHHSSS
T ss_pred HH----------HHHHHHHHHHHHHHHHCCCC
T ss_conf 69----------99998699999999854899
No 7
>1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A*
Probab=1.00 E-value=1 Score=1100.06 Aligned_cols=601 Identities=19% Similarity=0.263 Sum_probs=544.2
Q ss_pred CCCCCCEEEECCCCCCCHHHHHHCCCCEEEEECCCCCCCCCCCCCEECCCCCCCCCCCCC--CCCEECCCEEEEECCCEE
Q ss_conf 899992662136558997776521884089983389999999993002479999843689--983123850898069749
Q 001452 402 NCSPRYMRCTISQIPCTNDLLTTSGMQLALLVQPLALPHPSEEPIQIVDFGDMGPVRCSR--CKAYINPFMKFIDQGRRF 479 (1075)
Q Consensus 402 N~sP~yiR~T~~~iP~t~~ll~~~~LPLgivV~Pfa~~~~~e~pipvvd~g~~~pvRC~r--CrAYINPf~~f~~~Gr~w 479 (1075)
||+++|||+|||+||.+++++++++||||++|+||++. +++|++++ +|+||+| |||||||||+|+++|++|
T Consensus 6 ~~~~~~vR~T~n~~P~t~~~~~~~~lPlg~vi~P~~~~----~~~p~v~~---~pvRC~~~~CrayiNPf~~~~~~~~~W 78 (768)
T 1m2o_A 6 NEDINGVRFTWNVFPSTRSDANSNVVPVGCLYTPLKEY----DELNVAPY---NPVVCSGPHCKSILNPYCVIDPRNSSW 78 (768)
T ss_dssp HHHHHSEEESBSEEESSHHHHHHTCSCSEEEECTTCCC----TTCCEECS---CCCBCCSTTTCCBCCTTSCEETTTTEE
T ss_pred CCCCCCEEEEECCCCCCHHHHHCCCCCEEEEEEECCCC----CCCCCCCC---CCCCCCCCCCCEEECCCEEEECCCCEE
T ss_conf 06867167141368899789726777768999748878----88985789---997548999871878834880899989
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHH
Q ss_conf 92479998999733324789998878988987756731899833421137999828999997635588541999999999
Q 001452 480 ICSLCGFTDETPRDYHCNLGPDGRRRDADDRPELCRGTVEFVATKEYMVRDPMPAVFFFLIDVSMNALQTGATAAACSAI 559 (1075)
Q Consensus 480 ~CnlC~~~N~vP~~Y~~~ld~~g~R~D~~~RPEL~~gtVEfvap~eY~~R~p~pp~yvFvIDVS~~av~sG~l~~v~~sI 559 (1075)
+||||+..|++|.+|+ +++.. +.||||+++||||++++ +++.||+|+||||||.++++ ++.+|++|
T Consensus 79 ~C~~C~~~N~~P~~y~-~~~~~------~~~pEL~~~tvEy~~p~----~~~~pp~~vFvIDvs~~~~~---l~~l~~sl 144 (768)
T 1m2o_A 79 SCPICNSRNHLPPQYT-NLSQE------NMPLELQSTTIEYITNK----PVTVPPIFFFVVDLTSETEN---LDSLKESI 144 (768)
T ss_dssp CCTTTCCCCBCCGGGC-C---C------CCCGGGTCSEEEEECSC----CCCSCCEEEEEEECCSCHHH---HHHHHHHH
T ss_pred ECCCCCCCCCCCHHHC-CCCCC------CCCHHHCCCCEEEECCC----CCCCCCEEEEEEECCCCHHH---HHHHHHHH
T ss_conf 8436898799986772-57845------57912226978998788----99999889999989868899---99999999
Q ss_pred HHHHHCCCCCCCCEEEEEEECCEEEEEECCCCC---------------CCCEEEE--CCC-----C-----CCCCCCC--
Q ss_conf 998852999997289999949969999558778---------------9862862--279-----6-----4334677--
Q 001452 560 SQVISDLPEGPRTMVGIATFDSTIHFYNLKRAL---------------QQPLMLI--VPD-----V-----EDVYTPL-- 610 (1075)
Q Consensus 560 ~~~L~~Lp~~~rt~VGiITFDs~Ihfynl~~~l---------------~qpqmlV--vsD-----l-----dd~FvPl-- 610 (1075)
+.+|+.||++ ++|||||||+.||||+++..+ ++.+|++ ++| + +|+|+|+
T Consensus 145 ~~~L~~Lp~~--~~VGlITf~~~V~~y~l~~~~~~~~~V~~g~k~~~~~q~~~~l~~l~~~~~~~~~~~~~~~~f~p~~~ 222 (768)
T 1m2o_A 145 ITSLSLLPPN--ALIGLITYGNVVQLHDLSSETIDRCNVFRGDREYQLEALTEMLTGQKPTGPGGAASHLPNAMNKVTPF 222 (768)
T ss_dssp HHHHHTSCTT--CEEEEEEESSEEEECCCSSSSSEEEEEEETTSCCCHHHHHHHHHSCCCC---------------CCSS
T ss_pred HHHHHHCCCC--CEEEEEEECCEEEEEECCCCCCCCEEEECCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 9999848998--77999997987999978888775125634875466889999975015555677665444445666667
Q ss_pred -CCCCEEEHHHHHHHHHHHHHHCCC---CCCCCCCCCCHHHHHHHHHHHHHH----HCCCEEEEEECCCCCCCCCCCCCC
Q ss_conf -665404127769999999953674---324788753128999999999987----049879999147998676533245
Q 001452 611 -QSDIIVPVSECRQHLELLLESIPS---MFQNNRTAESAFGAAVKAAFLALK----STGGKLLVFQSVLPSVGIGALSAR 682 (1075)
Q Consensus 611 -p~~lLv~l~Esr~~I~~lLe~Lp~---~f~~~~~~~~~lG~AL~aA~~lLk----~~GGKIivF~ss~Pt~GpGaL~~R 682 (1075)
+++||++++|+++.|+++|++|+. ++.++++.++|+|+||++|..+|+ ..||||++|++++||+|+|+|+.|
T Consensus 223 ~~~~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~~~~G~Al~~A~~ll~~~~~~~GGrI~~F~sg~pt~GpG~l~~r 302 (768)
T 1m2o_A 223 SLNRFFLPLEQVEFKLNQLLENLSPDQWSVPAGHRPLRATGSALNIASLLLQGCYKNIPARIILFASGPGTVAPGLIVNS 302 (768)
T ss_dssp SGGGGSEEHHHHHHHHHHHHHTCCCSCSCCCTTBCCCCCHHHHHHHHHHHHHHHCTTSCCEEEEEESSCCCSSSSCCSCS
T ss_pred CCCCEEEEHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCC
T ss_conf 72012120899999999999865325566678887762079999999999740147787289999678997788646465
Q ss_pred CCCCCCCCCCCCCC-CCCCCCHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCHH
Q ss_conf 43367777888411-01235405899999999998368199999816874471102444445650699973787666357
Q 001452 683 EAEGRSNISSGEKE-THKLLQPADKTLKAMAIEFAEYQVCVDVFITTQTYVDIASISVIPKTTGGQVYYYYPFSALSDPA 761 (1075)
Q Consensus 683 e~~~~~~~~~gt~k-e~~Ll~p~~~fYk~LA~~~~~~gIsVDlFl~s~~yvDiatL~~L~~~TGG~v~~Y~~F~~~~d~~ 761 (1075)
++........+.+| ++++++++++||++||++|+++||+||+|+++.+|+|+++|+.|++.|||.+++|++|+. +
T Consensus 303 ~~~~~~rs~~d~~k~~~~~~~~a~~fY~~la~~~~~~gi~VDlF~~~~~~~dla~l~~l~~~TGG~v~~y~~f~~----~ 378 (768)
T 1m2o_A 303 ELKDPLRSHHDIDSDHAQHYKKACKFYNQIAQRVAANGHTVDIFAGCYDQIGMSEMKQLTDSTGGVLLLTDAFST----A 378 (768)
T ss_dssp BTTSCCCCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHTCEEEEEEECSSCCSHHHHHHHHHHHTCCEEEESCTTS----H
T ss_pred CCCCCCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHCCEEEEEEECCCCCCCHHHHHHHHHCCCCEEEECCCCCH----H
T ss_conf 443334443465432012137158999999999997796899998158766858776676547955997389866----8
Q ss_pred HHHHHHHHHCCC------CCCCCCEEEEEECCCCEEEEEECCCC----------------CCCCCCEEECCCCCCCEEEE
Q ss_conf 899999982168------84235227999479916974327722----------------47998226247899973999
Q 001452 762 KLYNDLRWNITR------PQGFEAVMRVRCSQGIQVQEYHGNFC----------------KRIPTDIDLPAIDCNKAIMV 819 (1075)
Q Consensus 762 kL~~dL~r~Ltr------~~g~ea~lRVRcS~GL~V~~~~Gnf~----------------~rs~~~~~lp~id~dtSi~v 819 (1075)
+|.++|+|.+++ ++||+|+||||||+||+|+++|||++ .+++++|+++++++|++|+|
T Consensus 379 ~~~~~l~r~l~~~~~~~~~~gf~a~mrVr~S~gl~v~~~~G~~~~~~~~~~~~vsd~~ig~~~t~~~~l~~~~~d~t~~v 458 (768)
T 1m2o_A 379 IFKQSYLRLFAKDEEGYLKMAFNGNMAVKTSKDLKVQGLIGHASAVKKTDANNISESEIGIGATSTWKMASLSPYHSYAI 458 (768)
T ss_dssp HHHHHHHHTTCBCTTSSBSCEEEEEEEEEECTTEEEEEEESSCEECCSCCCSCBCSSCSSBCSCSEEEEEEECTTCCEEE
T ss_pred HHHHHHHHHHHHCCCCCCCEEEEEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCEECCCCCCEEEEECCCCCCEEEE
T ss_conf 89999999984301455545778999999669906987653741466555666575442468875278615798877999
Q ss_pred EEEECCCCC-------------CCCCEEEEEEEEEEECCCCEEEEEEECCCCCCCC-HHHHHHHCCHHHHHHHHHHHHHH
Q ss_conf 998148879-------------9981289999998842883999999034577789-77898605555799999999998
Q 001452 820 TLKHDDKLQ-------------DGSECAFQCALLYTTVYGQRRIRVTTLSLPCTSN-LSNLYRSADLDTQFTCFMKQAAS 885 (1075)
Q Consensus 820 eL~~d~~L~-------------~~~~~yiQ~AlLYTs~~GeRRIRV~Tl~lpVts~-l~~vf~~aD~dAi~~~laK~a~~ 885 (1075)
+|++++++. ++..+|||+|++||+.+|+|||||||++++++++ +.++|+++|++|++++|+|+|+.
T Consensus 459 ~f~~~~~~~~~~~~~~~~l~~~~~~~~~iQ~a~lYt~~~G~rriRV~T~~~~~t~~~~~~v~~~~Dqea~~~llar~av~ 538 (768)
T 1m2o_A 459 FFEIANTAANSNPMMSAPGSADRPHLAYTQFITTYQHSSGTNRIRVTTVANQLLPFGTPAIAASFDQEAAAVLMARIAVH 538 (768)
T ss_dssp EEEECCC-----------------CEEEEEEEEEEEETTTEEEEEEEEEEEEEECTTCHHHHHTBCHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCEEEEEEEECCCCCCCCHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf 99963655643333334556567870799999987869998899999523445575589999744999999999999999
Q ss_pred HCCCCCHHHHHHHHHHHHHHHHH---HHHHHCCCCCCCCCCCCHHHCCHHHHHHHHHHCCCCCC-CCCCCHHHHHHHHHH
Q ss_conf 44999979999999999999999---99862046799974335021040999999862014989-999903999999998
Q 001452 886 EIPSTPLANVREQMMNLCVNALV---SYRKFCATVSSSGQLILPEALKLLPLYTLALIKSTGLR-TDGRIDDRSFWITYV 961 (1075)
Q Consensus 886 ~~l~~~l~d~R~~l~~~lv~iL~---~YRk~ca~~~s~gQLiLPesLKlLPlyil~LlKs~~Lr-~~vs~DeR~~~~~~l 961 (1075)
+++++++.|+|++|++++++++. .|||.| +++|+||++||+||+|+++|+||.+|+ .++++|||+++++.+
T Consensus 539 ~~~~~~~~d~r~~l~~~li~l~~~~~~Yrk~~-----~~~l~lp~~lk~lP~~~~~L~ks~~l~~~~~spDer~~~~~~l 613 (768)
T 1m2o_A 539 KAETDDGADVIRWLDRTLIKLCQKYADYNKDD-----PQSFRLAPNFSLYPQFTYYLRRSQFLSVFNNSPDETAFYRHIF 613 (768)
T ss_dssp HTTSSCHHHHHHHHHHHHHHHHHHHSBCCTTC-----GGGCBCCTTTTHHHHHHHHHHHSTTTCCTTSCHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCC-----CCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 87319899999999999999999999874679-----6213267779999999999856624579998905999999999
Q ss_pred CCCCHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCEEEEEECCCCCHHHHHHHHC-CCCCC
Q ss_conf 17991010002121189801499999997899742374111368727999759769999579887999997609-99888
Q 001452 962 SSVSIPFAVPFVYPRMVAIHDLDKGEDGSIIPPFLPLSSEHVSDEGIYLLENGEDALIYIGSSVDSSILHQLFG-ISSVD 1040 (1075)
Q Consensus 962 ~s~~v~~l~~~lYPrL~~lh~l~~~~~~~~lP~~l~LS~e~L~~~GiYLLDnG~~i~LwvG~~v~~~ll~~LFG-v~s~~ 1040 (1075)
+++++..++.|+||+||++|.. ..|++++|+.++|+++||||||+|+.++||+|+.++ +|+++.|+ ++..+
T Consensus 614 ~~~~~~~~l~~iyP~L~~~~~~-------~~P~~v~Ls~~~l~~~gi~LLD~g~~i~i~~G~~v~-~~~~~~~~~~~~~~ 685 (768)
T 1m2o_A 614 TREDTTNSLIMIQPTLTSFSME-------DDPQPVLLDSISVKPNTILLLDTFFFILIYHGEQIA-QWRKAGYQDDPQYA 685 (768)
T ss_dssp TTSCHHHHHHHHSCEEEEECSS-------SCCEECCSBGGGCCTTCEEEEECSSEEEEEECHHHH-HHHHHTGGGSTTCH
T ss_pred HCCCHHHHHHHHCCEEEEECCC-------CCCCCEECCHHHCCCCCEEEEECCCEEEEEECCCCH-HHHHCCCCCCCHHH
T ss_conf 7399999988657848985488-------977636486998578988999889899999887521-78746567883366
Q ss_pred CC
Q ss_conf 98
Q 001452 1041 EV 1042 (1075)
Q Consensus 1041 ~i 1042 (1075)
++
T Consensus 686 ~~ 687 (768)
T 1m2o_A 686 DF 687 (768)
T ss_dssp HH
T ss_pred HH
T ss_conf 68
No 8
>2yrc_A Protein transport protein SEC23A; zinc binding, copii, coat protein complex-II, endoplasmic reticulum, golgi, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yrd_A
Probab=1.00 E-value=1 Score=109.03 Aligned_cols=44 Identities=30% Similarity=0.663 Sum_probs=41.7
Q ss_pred CCCCCCCCC--CCCEECCCEEEEECCCEEEECCCCCCCCCCCCCCC
Q ss_conf 999843689--98312385089806974992479998999733324
Q 001452 453 DMGPVRCSR--CKAYINPFMKFIDQGRRFICSLCGFTDETPRDYHC 496 (1075)
Q Consensus 453 ~~~pvRC~r--CrAYINPf~~f~~~Gr~w~CnlC~~~N~vP~~Y~~ 496 (1075)
+.+|+||+| |||||||||+|+++|++|+||||+..|++|.+|+.
T Consensus 6 ~~~pvRC~r~~CraylNP~~~~~~~~~~W~C~~C~~~N~~P~~Y~~ 51 (59)
T 2yrc_A 6 SGEPVLCSRTTCRAVLNPLCQVDYRAKLWACNFCYQRNQFPPSYAG 51 (59)
T ss_dssp CCCCCBCSCTTTCCBCCTTSEEEGGGTEEECSSSCCEEECCSCCSS
T ss_pred CCCCCCCCCCCCCEEECCCEEEECCCCEEECCCCCCCCCCCHHHHC
T ss_conf 7899604798987297996598789999984168985789978805
No 9
>4fx5_A VON willebrand factor type A; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, blood clotting; HET: MSE; 1.73A {Catenulispora acidiphila}
Probab=1.00 E-value=1 Score=89.75 Aligned_cols=307 Identities=11% Similarity=0.062 Sum_probs=187.8
Q ss_pred CCCEEEEEEECCHHHHH-HHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEECCCCCCCCEEEECCCCCCCCCCC
Q ss_conf 98289999976355885-41999999999998852999997289999949969999558778986286227964334677
Q 001452 532 MPAVFFFLIDVSMNALQ-TGATAAACSAISQVISDLPEGPRTMVGIATFDSTIHFYNLKRALQQPLMLIVPDVEDVYTPL 610 (1075)
Q Consensus 532 ~pp~yvFvIDVS~~av~-sG~l~~v~~sI~~~L~~Lp~~~rt~VGiITFDs~Ihfynl~~~l~qpqmlVvsDldd~FvPl 610 (1075)
.+..++||||+|.+.-. ..-++.++++++..|+.|..+ .+|+||+|++..+..- |+
T Consensus 76 ~~~dvv~VLD~SGSM~~~~~rl~~ak~a~~~ll~~L~~~--drv~lV~Fs~~a~~~~---------------------p~ 132 (464)
T 4fx5_A 76 SENVEVIIIDCSGSMDYPRTKMMAAKEATKVAIDTLTDG--AFFAVVAGTEGARVVY---------------------PT 132 (464)
T ss_dssp CCEEEEEEEECCGGGGTTTHHHHHHHHHHHHHHHHSCTT--CEEEEEEESSSEEEEE---------------------SS
T ss_pred CCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCC--CEEEEEEECCCEEEEE---------------------CC
T ss_conf 970399999867114889846999999999999728999--8899999838607985---------------------69
Q ss_pred CCCCEEEHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCC---CEEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 665404127769999999953674324788753128999999999987049---87999914799867653324543367
Q 001452 611 QSDIIVPVSECRQHLELLLESIPSMFQNNRTAESAFGAAVKAAFLALKSTG---GKLLVFQSVLPSVGIGALSAREAEGR 687 (1075)
Q Consensus 611 p~~lLv~l~Esr~~I~~lLe~Lp~~f~~~~~~~~~lG~AL~aA~~lLk~~G---GKIivF~ss~Pt~GpGaL~~Re~~~~ 687 (1075)
..++...-.+.++.+...|+.|.. ...+.++.||+.|...|+... ..|++++.|.++.+.
T Consensus 133 t~~l~~~~~~~~~~l~~~I~~L~~------~GgT~l~~aL~~A~~~l~~~~~~~~~IILLTDG~~~~~~----------- 195 (464)
T 4fx5_A 133 GGQLLRADYQSRAAAKEAVGRLHA------NGGTAMGRWLAQAGRIFDTAPSAIKHAILLTDGKDESET----------- 195 (464)
T ss_dssp SSSCEECSHHHHHHHHHHHHTCCC------CSCCCHHHHHHHHHHHHTTCTTSEEEEEEEESSCCTTSC-----------
T ss_pred CCCCCCCCHHHHHHHHHHHHCCCC------CCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCC-----------
T ss_conf 754564887789999999970899------999968999999999875289877889999589999998-----------
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHH
Q ss_conf 77788841101235405899999999998368199999816874471102444445650699973787666357899999
Q 001452 688 SNISSGEKETHKLLQPADKTLKAMAIEFAEYQVCVDVFITTQTYVDIASISVIPKTTGGQVYYYYPFSALSDPAKLYNDL 767 (1075)
Q Consensus 688 ~~~~~gt~ke~~Ll~p~~~fYk~LA~~~~~~gIsVDlFl~s~~yvDiatL~~L~~~TGG~v~~Y~~F~~~~d~~kL~~dL 767 (1075)
. .. ... +.+..+.+|.|..|.++.+ .|...|..|+..|||..++..++. +....+.++
T Consensus 196 -------~---------~~-l~~-~~~a~~~~i~i~tiGiG~~-~d~~~L~~IA~~tgG~~~~v~d~~---~L~~~f~~i 253 (464)
T 4fx5_A 196 -------P---------AD-LAR-AIQSSIGNFTADCRGIGED-WEPKELRKIADALLGTVGIIRDPA---TLAEDFREM 253 (464)
T ss_dssp -------H---------HH-HHH-HHHHHTTTCEEEEEEESSS-SCHHHHHHHHHHTTCCEEEESSGG---GHHHHHHHH
T ss_pred -------H---------HH-HHH-HHHHHCCCCEEEEEEECCC-CCHHHHHHHHHHCCCEEEECCCHH---HHHHHHHHH
T ss_conf -------4---------99-999-9998438975999996985-289999999981798799859989---999999999
Q ss_pred HHHCCCCCCCCCEEEEEECCCCEEEEEECC------C-CCC------CCCCEEECCCCCCC--EEEEEEEECCCCCCCCC
Q ss_conf 982168842352279994799169743277------2-247------99822624789997--39999981488799981
Q 001452 768 RWNITRPQGFEAVMRVRCSQGIQVQEYHGN------F-CKR------IPTDIDLPAIDCNK--AIMVTLKHDDKLQDGSE 832 (1075)
Q Consensus 768 ~r~Ltr~~g~ea~lRVRcS~GL~V~~~~Gn------f-~~r------s~~~~~lp~id~dt--Si~veL~~d~~L~~~~~ 832 (1075)
...+.....-++.++|++..|+.+..+..- . ..+ ....+.++.+ .+. .|.++|.+... ..+..
T Consensus 254 ~~~~~s~~~~dv~l~l~~~~g~~v~~v~~v~P~~~~l~~~~~~~~~~~~~~v~lG~l-~~e~r~~lv~l~v~~~-~~g~~ 331 (464)
T 4fx5_A 254 TAKSMGKEVADVALRLWAPKGATIRYVKQVSPNLADLSGMRVPGDNPLTGDYPTGAW-GAESREYHICVEVEPG-NIGQE 331 (464)
T ss_dssp HHHHHTCCEEEEEEEEECCTTCEEEEEEEEESBCEECGGGCEECSSTTEEEEEEEEE-SSEEEEEEEEEECCCC-CTTCE
T ss_pred HHHHHCHHEEEEEEEEEECCCCEEEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCC-CCCEEEEEEEEECCCC-CCCCE
T ss_conf 998615104326999994899179999863664344676555678883789989767-7872899999984788-98850
Q ss_pred EE-EEEEEEEEECCCCEEEEEEECCCCCCCCHH-------HHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 28-999999884288399999903457778977-------898605555799999999998449999799999999999
Q 001452 833 CA-FQCALLYTTVYGQRRIRVTTLSLPCTSNLS-------NLYRSADLDTQFTCFMKQAASEIPSTPLANVREQMMNLC 903 (1075)
Q Consensus 833 ~y-iQ~AlLYTs~~GeRRIRV~Tl~lpVts~l~-------~vf~~aD~dAi~~~laK~a~~~~l~~~l~d~R~~l~~~l 903 (1075)
.. .++.+.|.+..|++.+.-..+.+.++.+.. +|.+...+..++ -..+++......+....+...|....
T Consensus 332 ~~~~~v~~~y~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~V~~~~~~~~~a-~~~~~a~~~~~~gd~~~A~~~L~~A~ 409 (464)
T 4fx5_A 332 KLAGRVQLVAKDAGGATLLGEGKIRAVWTEDTDLSTRINGRVAHYTGQAEMA-AAIQEGLDAQAAGDLDTATARLGRAM 409 (464)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEEECSCHHHHSCCCHHHHHHHHHHHHH-HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred EEEEEEEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHH-HHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 5889999997177766402566359999766223578998999999999999-99999999998699999999999999
No 10
>2x31_A Magnesium-chelatase 60 kDa subunit; ligase, bacteriochlorophyll biosynthesis, photosynthesis; 7.50A {Rhodobacter capsulatus}
Probab=1.00 E-value=1 Score=69.61 Aligned_cols=179 Identities=14% Similarity=0.168 Sum_probs=99.7
Q ss_pred CCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEECCCCCCCCEEEECCCCCCCCCCCC
Q ss_conf 98289999976355885419999999999988529999972899999499699995587789862862279643346776
Q 001452 532 MPAVFFFLIDVSMNALQTGATAAACSAISQVISDLPEGPRTMVGIATFDSTIHFYNLKRALQQPLMLIVPDVEDVYTPLQ 611 (1075)
Q Consensus 532 ~pp~yvFvIDVS~~av~sG~l~~v~~sI~~~L~~Lp~~~rt~VGiITFDs~Ihfynl~~~l~qpqmlVvsDldd~FvPlp 611 (1075)
.+..++||||+|.+--. .-++.++++++..++.+- ....+||+|+|++... +..+|+.
T Consensus 4 ~~~~vv~vlD~SgSM~~-~~~~~~k~~~~~~~~~~~-~~~~~v~lv~f~~~~~--------------------~~~~~~~ 61 (189)
T 2x31_A 4 SDRVLIFAVDASGSAAV-ARLSEAKGAVELLLGRAY-AARDHVSLITFRGTAA--------------------QVLLQPS 61 (189)
T ss_dssp SCCEEEEEEECCTTSCC---CHHHHHHHHHHHHHSC-TTTSCCCEEEESBSCC--------------------CBCTTTC
T ss_pred CCEEEEEEEECCCCCCC-HHHHHHHHHHHHHHHHHC-CCCCEEEEEEECCCCC--------------------EEECCCC
T ss_conf 87179999978889886-699999999999999730-7885799999879984--------------------0766898
Q ss_pred CCCEEEHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHC-----CCEEEEEECCCCCCCCCCCCCCCCCC
Q ss_conf 6540412776999999995367432478875312899999999998704-----98799991479986765332454336
Q 001452 612 SDIIVPVSECRQHLELLLESIPSMFQNNRTAESAFGAAVKAAFLALKST-----GGKLLVFQSVLPSVGIGALSAREAEG 686 (1075)
Q Consensus 612 ~~lLv~l~Esr~~I~~lLe~Lp~~f~~~~~~~~~lG~AL~aA~~lLk~~-----GGKIivF~ss~Pt~GpGaL~~Re~~~ 686 (1075)
..++.+...|+.|.. ...+.++.||+.|...++.. ...|++++.+.++.|...-..+++..
T Consensus 62 --------~~~~~~~~~i~~l~~------~g~T~~~~al~~a~~~l~~~~~~~~~~~ivliTDG~~~~~~~~~~~~~~~~ 127 (189)
T 2x31_A 62 --------RSLTQTKRQLQGLPG------GGGTPLASGMEMAMVTAKQARSRGMTPTIALLTDGRGNIALDGTANRELAG 127 (189)
T ss_dssp --------SCHHHHHHHHHHCCC------CBCCCCHHHHHHHHHHHHTCTTTCSSEEEEECCBSCCSSCCTHHHHHGGGT
T ss_pred --------CCHHHHHHHHHCCCC------CCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCCCHH
T ss_conf --------999999999966999------999888999999999997345789923999977899877877655556456
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHH
Q ss_conf 77778884110123540589999999999836819999981687447110244444565069997378766635789999
Q 001452 687 RSNISSGEKETHKLLQPADKTLKAMAIEFAEYQVCVDVFITTQTYVDIASISVIPKTTGGQVYYYYPFSALSDPAKLYND 766 (1075)
Q Consensus 687 ~~~~~~gt~ke~~Ll~p~~~fYk~LA~~~~~~gIsVDlFl~s~~yvDiatL~~L~~~TGG~v~~Y~~F~~~~d~~kL~~d 766 (1075)
. . ..+. +..+.+.+|.|..+.+... |...|..|+..|||..++.++ .+.+.|...
T Consensus 128 ~---~--~~~~--------------~~~~~~~gi~v~~ig~g~~--~~~~L~~iA~~~~G~~~~~~~----~~~~~~~~~ 182 (189)
T 2x31_A 128 E---Q--ATKV--------------ARAIRASGMPAVIIDTAMR--PNPALVDLARTMDAHYIALPR----ATAHKMADV 182 (189)
T ss_dssp C---C--CEEE--------------EECTGGGGSCCTHHHHHHS--SCSSSCSTTTEEEESSTTTHH----HHHHHHHHH
T ss_pred H---H--HHHH--------------HHHHHHCCCEEEEEECCCC--CHHHHHHHHHHCCCEEEECCC----CCHHHHHHH
T ss_conf 9---9--9999--------------9999976985999933788--779999999713976997798----664889999
Q ss_pred HHHHC
Q ss_conf 99821
Q 001452 767 LRWNI 771 (1075)
Q Consensus 767 L~r~L 771 (1075)
+.+.+
T Consensus 183 ~~~~~ 187 (189)
T 2x31_A 183 LGAAL 187 (189)
T ss_dssp HHHCC
T ss_pred HHHHH
T ss_conf 98863
Done!