Query 001453
Match_columns 1075
No_of_seqs 306 out of 905
Neff 4.3
Searched_HMMs 29240
Date Tue Mar 26 16:13:18 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001453.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_755-759//hhsearch_pdb/001453hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ul4_A SPL4, squamosa promoter 1.0 1 1 274.3 -1.2 91 137-227 2-92 (94)
2 1ul5_A SPL7, squamosa promoter 1.0 1 1 259.3 -2.9 83 142-224 2-84 (88)
3 1wj0_A Squamosa promoter-bindi 1.0 1 1 192.7 1.1 59 142-200 2-60 (60)
4 4gpm_A Engineered protein OR26 1.0 1 1 164.7 14.3 128 819-975 37-164 (169)
5 3lvq_E ARF-GAP with SH3 domain 1.0 1 1 161.9 13.0 131 821-974 134-267 (497)
6 4b93_B Ankyrin repeat domain-c 1.0 1 1 158.6 13.1 137 819-984 86-226 (269)
7 4gpm_A Engineered protein OR26 1.0 1 1 157.9 15.3 127 818-973 3-129 (169)
8 1dcq_A PYK2-associated protein 1.0 1 1 156.3 14.1 144 817-983 128-274 (278)
9 3ljn_A Hypothetical protein; a 1.0 1 1 155.9 13.1 131 819-973 138-270 (364)
10 4hbd_A KN motif and ankyrin re 1.0 1 1 154.4 14.7 135 819-972 111-275 (276)
No 1
>1ul4_A SPL4, squamosa promoter binding protein-like 4; transcription factor, SBP, flower development, DNA binding protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.72.1.1
Probab=1.00 E-value=1 Score=274.25 Aligned_cols=91 Identities=60% Similarity=1.044 Sum_probs=86.1
Q ss_pred CCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCHHHCCCCEEEECCCCCHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 99999999742379745530250000212542011187643148940037675105778887566621189997567764
Q 001453 137 SPGTAPYPMCQVDNCKEDLSNAKDYHRRHKVCELHSKSTKALVGKQMQRFCQQCSRFHPLSEFDEGKRSCRRRLAGHNRR 216 (1075)
Q Consensus 137 ~~~~~~~~~CqV~gC~~dL~~~k~Y~~R~rvCe~H~ka~~v~~~G~~~RFCQQC~rfH~L~eFd~~krSCr~~L~~hn~R 216 (1075)
++|+++.++||||||++||+.+|+||+||||||.|+||++|+++|+++||||||+|||+|+|||++|||||++|++||+|
T Consensus 2 ~~~~~~~~~CqV~GC~~dL~~~k~Y~rR~rvCe~H~ka~~V~~~G~~~RFCQQCsrFH~L~eFD~~kRSCR~rL~~hn~R 81 (94)
T 1ul4_A 2 SSGSSGLRLCQVDRCTADMKEAKLYHRRHKVCEVHAKASSVFLSGLNQRFCQQCSRFHDLQEFDEAKRSCRRRLAGHNER 81 (94)
T ss_dssp ------CCCCSSTTCCCCCTTCCHHHHHTTCCHHHHTCSCEEETTEEEEECTTTSSEEETTTCCSSCCSCSTTTTCCCCC
T ss_pred CCCCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHCCCCHHHHCCCCCHHHHHHHHHHHH
T ss_conf 98889998036589986435688887731141887268879889854799999852677778556554099999999998
Q ss_pred HCCCCCCCCCC
Q ss_conf 21689941000
Q 001453 217 RRKTQPEDITS 227 (1075)
Q Consensus 217 Rrk~~~~~~~~ 227 (1075)
|||++++..++
T Consensus 82 RRk~~~~~~~~ 92 (94)
T 1ul4_A 82 RRKSSGESGPS 92 (94)
T ss_dssp CCSCCCC----
T ss_pred HCCCCCCCCCC
T ss_conf 66599876878
No 2
>1ul5_A SPL7, squamosa promoter binding protein-like 7; transcription factor, SBP, flower development, DNA binding protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.72.1.1
Probab=1.00 E-value=1 Score=259.25 Aligned_cols=83 Identities=43% Similarity=0.919 Sum_probs=78.8
Q ss_pred CCCCCCCCCCHHHHHCCCCCCCCCCCCHHHCCCCEEEECCCCCHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 99974237974553025000021254201118764314894003767510577888756662118999756776421689
Q 001453 142 PYPMCQVDNCKEDLSNAKDYHRRHKVCELHSKSTKALVGKQMQRFCQQCSRFHPLSEFDEGKRSCRRRLAGHNRRRRKTQ 221 (1075)
Q Consensus 142 ~~~~CqV~gC~~dL~~~k~Y~~R~rvCe~H~ka~~v~~~G~~~RFCQQC~rfH~L~eFd~~krSCr~~L~~hn~RRrk~~ 221 (1075)
..++||||||++||+.+|+||+||||||.|+||++|+++|+++||||||+|||+|+|||++|||||++|++||+||||..
T Consensus 2 ~~~~CqV~GC~~dLs~~k~Y~rR~rvCe~H~ka~~v~~~G~~~RFCQQC~rFH~L~eFD~~kRSCR~rL~~hn~RRR~~~ 81 (88)
T 1ul5_A 2 SVARCQVPDCEADISELKGYHKRHRVCLRCATASFVVLDGENKRYCQQCGKFHLLPDFDEGKRSCRRKLERHNNRRKRKP 81 (88)
T ss_dssp -CCSCEETTEECCCSSCCSSSGGGTCCHHHHHHSEEEETTEEEEECTTTSSEEEGGGBCSSTTSBSSSCCCSSSCCCCCS
T ss_pred CCCEEECCCCCCCHHHHHHHHHHCCCCHHHCCCCEEEECCEEEHHHHHHCCCCCHHHHCCCCCHHHHHHHHHHHHHCCCC
T ss_conf 98756648998785576677752023577747887988998648987750046735525645149999999999862587
Q ss_pred CCC
Q ss_conf 941
Q 001453 222 PED 224 (1075)
Q Consensus 222 ~~~ 224 (1075)
++.
T Consensus 82 ~~~ 84 (88)
T 1ul5_A 82 VDK 84 (88)
T ss_dssp CSS
T ss_pred CCC
T ss_conf 667
No 3
>1wj0_A Squamosa promoter-binding protein-like 12; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.72.1.1
Probab=1.00 E-value=1 Score=192.68 Aligned_cols=59 Identities=75% Similarity=1.229 Sum_probs=57.7
Q ss_pred CCCCCCCCCCHHHHHCCCCCCCCCCCCHHHCCCCEEEECCCCCHHHHHHCCCCCCCCCC
Q ss_conf 99974237974553025000021254201118764314894003767510577888756
Q 001453 142 PYPMCQVDNCKEDLSNAKDYHRRHKVCELHSKSTKALVGKQMQRFCQQCSRFHPLSEFD 200 (1075)
Q Consensus 142 ~~~~CqV~gC~~dL~~~k~Y~~R~rvCe~H~ka~~v~~~G~~~RFCQQC~rfH~L~eFd 200 (1075)
+.++||||||++||+.+|+|||||||||.|+||++|+++|.++||||||+|||+|+|||
T Consensus 2 ~~~~CqV~gC~~dl~~~k~Y~rR~rvCe~H~ka~~v~~~G~~~RFCQQCsrFH~L~eFD 60 (60)
T 1wj0_A 2 SAICCQVDNCGADLSKVKDYHRRHKVCEIHSKATTALVGGIMQRFCQQCSRFHVLEEFD 60 (60)
T ss_dssp -CEECSSTTCCCEETSCCSSTTTTTCCHHHHTCSCEEETTEEECCCSSSCSCCBTTSCC
T ss_pred CCCEEECCCCCCCHHHHHHHHHCCCCCHHHCCCCEEEECCEEEEHHHHCCCCCCCCCCC
T ss_conf 98632638998676672877441461866757887999998775331104766855579
No 4
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=1.00 E-value=1 Score=164.71 Aligned_cols=128 Identities=20% Similarity=0.211 Sum_probs=112.3
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 34689999842961358999999882566678887778863026439999998199999999987289899999987678
Q 001453 819 FKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIF 898 (1075)
Q Consensus 819 fktLL~FAvdrGwcAVvK~LLd~l~~g~v~i~~~spe~~~~~~g~TlLH~AV~~g~~~iVeLLL~~gA~~~dgsa~~ylf 898 (1075)
-+++|++|+..+...+++.|++.+ ++++.. +. .|.||||+|++.|+.++|++||++|+
T Consensus 37 g~t~l~~a~~~~~~~~~~~ll~~g----ad~~~~-----d~-~g~TpLh~A~~~g~~~~v~~Ll~~ga------------ 94 (169)
T 4gpm_A 37 GRTPLHHAAENGHKEVVKLLISKG----ADVNAK-----DS-DGRTPLHHAAENGHKEVVKLLISKGA------------ 94 (169)
T ss_dssp SCCHHHHHHHTTCHHHHHHHHHTT----CCTTCC-----CT-TSCCHHHHHHHTTCHHHHHHHHHTTC------------
T ss_pred CCCHHHHHHHCCCHHHHHHHHHCC----CCHHHH-----CC-CCCCHHHHHHHCCCHHHHHHHHHCCC------------
T ss_conf 898999999849999999998315----311330-----35-79999999999397999999998769------------
Q ss_pred CCCCCCCCCCHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHCCCCC
Q ss_conf 99789999991999998229958799998379999899988756889999899999972999999999973201369
Q 001453 899 PPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADRRN 975 (1075)
Q Consensus 899 dpna~d~~G~TPLHlAA~~~g~e~IVeLLL~~p~~iG~~AdvNarD~~G~TPLHyAa~rGn~eiIeLLl~K~a~~~~ 975 (1075)
++|.++..|+||||+|+.. |+.+++++|++. +|+++.+|.+|.||||||+.+|+.+++++|+++.++...
T Consensus 95 dvn~~d~~G~TpLh~A~~~-g~~~~v~~Ll~~------gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA~ie~ 164 (169)
T 4gpm_A 95 DVNAKDSDGRTPLHHAAEN-GHKEVVKLLISK------GADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGGWLEH 164 (169)
T ss_dssp CTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHT------TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC------
T ss_pred CCCCCCCCCCCHHHHHHHC-CCHHHHHHHHHC------CCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCC
T ss_conf 9998799999899999985-989999999986------997415699999999999986899999999987999077
No 5
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=1.00 E-value=1 Score=161.95 Aligned_cols=131 Identities=18% Similarity=0.105 Sum_probs=111.4
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCHHHHHHHH---CCCHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 689999842961358999999882566678887778863026439999998---19999999998728989999998767
Q 001453 821 FLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVK---MKCRRMVDLLIHYSLTSSNDTPQKYI 897 (1075)
Q Consensus 821 tLL~FAvdrGwcAVvK~LLd~l~~g~v~i~~~spe~~~~~~g~TlLH~AV~---~g~~~iVeLLL~~gA~~~dgsa~~yl 897 (1075)
..|+.|+..|....++.||+.+++ ++...+.......|.||||+||+ .|+.++|++||++|+
T Consensus 134 ~~L~~A~~~g~~~~v~~ll~~g~~----~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga----------- 198 (497)
T 3lvq_E 134 QRLWTAICNRDLLSVLEAFANGQD----FGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGG----------- 198 (497)
T ss_dssp HHHHHHHHHTCHHHHHHHHHTTCC----SSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSC-----------
T ss_pred HHHHHHHHCCCHHHHHHHHHHCCC----CCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHCCC-----------
T ss_conf 999998863589999999860665----35777775434555058899998601564799999997499-----------
Q ss_pred CCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHCCCC
Q ss_conf 89978999999199999822995879999837999989998875688999989999997299999999997320136
Q 001453 898 FPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADRR 974 (1075)
Q Consensus 898 fdpna~d~~G~TPLHlAA~~~g~e~IVeLLL~~p~~iG~~AdvNarD~~G~TPLHyAa~rGn~eiIeLLl~K~a~~~ 974 (1075)
++|+++..|+||||+||.. |+.+++++|++. +|+++++|.+|.||||+|+..|+.+++++|+++.++..
T Consensus 199 -~vn~~d~~g~TpLh~A~~~-g~~~~v~~Ll~~------ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~ 267 (497)
T 3lvq_E 199 -HLDAKAADGNTALHYAALY-NQPDCLKLLLKG------RALVGTVNEAGETALDIARKKHHKECEELLEQAQAGTF 267 (497)
T ss_dssp -CTTCCCSSSCCHHHHHTTT-TCHHHHHHHHHT------CCCCSCCCTTCCCHHHHHHHTTCHHHHHHHHHTCC---
T ss_pred -CCCCCCCCCCCHHHHHHHC-CCHHHHHHHHHC------CCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHCCCCC
T ss_conf -9776089999599999980-989899999976------99987819898979999998197999999998189988
No 6
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=158.61 Aligned_cols=137 Identities=15% Similarity=0.109 Sum_probs=117.5
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 34689999842961358999999882566678887778863026439999998199999999987289899999987678
Q 001453 819 FKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIF 898 (1075)
Q Consensus 819 fktLL~FAvdrGwcAVvK~LLd~l~~g~v~i~~~spe~~~~~~g~TlLH~AV~~g~~~iVeLLL~~gA~~~dgsa~~ylf 898 (1075)
-.++|++|+.+|+.++++.||+.++ +++.. ...+.||||.|+..++.+++++||++|+
T Consensus 86 G~TpLh~A~~~g~~~~v~~Ll~~~a----~~~~~------~~~g~t~l~~a~~~~~~~~~~~Ll~~g~------------ 143 (269)
T 4b93_B 86 GSSPLHVAALHGRADLIPLLLKHGA----NAGAR------NADQAVPLHLACQQGHFQVVKCLLDSNA------------ 143 (269)
T ss_dssp SCCHHHHHHHTTCTTHHHHHHHTTC----CTTCC------CTTCCCHHHHHHHHTCHHHHHHHHHTTC------------
T ss_pred CCCHHHHHHHCCCHHHHHHHHHCCC----CCCCC------CCCCCCCCCCCCCCCHHHHHHHHHHCCC------------
T ss_conf 9999999998496999999986599----86755------7899983300001272999999998799------------
Q ss_pred CCCCCCCCCCHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHCCC----C
Q ss_conf 997899999919999982299587999983799998999887568899998999999729999999999732013----6
Q 001453 899 PPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADR----R 974 (1075)
Q Consensus 899 dpna~d~~G~TPLHlAA~~~g~e~IVeLLL~~p~~iG~~AdvNarD~~G~TPLHyAa~rGn~eiIeLLl~K~a~~----~ 974 (1075)
++|.++..|.||||+|+.. |+.+++++|++. +|++|++|..|.||||+|+..|+.+++++|+++.++. .
T Consensus 144 ~~n~~d~~g~TpL~~A~~~-g~~~~v~~Ll~~------gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~~~d~ 216 (269)
T 4b93_B 144 KPNKKDLSGNTPLIYACSG-GHHELVALLLQH------GASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNK 216 (269)
T ss_dssp CSCCCCTTCCCHHHHHHHT-TCGGGHHHHHHT------TCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSCCCCT
T ss_pred CCCCCCCCCCCHHHHHHHC-CCHHHHHHHHHC------CCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCC
T ss_conf 9887789999999999987-899999999978------799783214788389999986889999999987889988699
Q ss_pred CCCEEEEECC
Q ss_conf 9911120074
Q 001453 975 NGQVTIPVGV 984 (1075)
Q Consensus 975 ~~~v~l~i~~ 984 (1075)
+|+-++.+..
T Consensus 217 ~G~TpL~~A~ 226 (269)
T 4b93_B 217 RQRTAVDCAE 226 (269)
T ss_dssp TSCCSGGGSC
T ss_pred CCCCHHHHHH
T ss_conf 9999999988
No 7
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=1.00 E-value=1 Score=157.88 Aligned_cols=127 Identities=22% Similarity=0.228 Sum_probs=111.8
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 23468999984296135899999988256667888777886302643999999819999999998728989999998767
Q 001453 818 RFKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYI 897 (1075)
Q Consensus 818 RfktLL~FAvdrGwcAVvK~LLd~l~~g~v~i~~~spe~~~~~~g~TlLH~AV~~g~~~iVeLLL~~gA~~~dgsa~~yl 897 (1075)
.+...|+.|+.+|+.++++.||+.+ ++++.. +. .|.||||+|+..++.+++++||++|+
T Consensus 3 dlg~~L~~Aa~~G~~~~v~~Ll~~G----advn~~-----d~-~g~t~l~~a~~~~~~~~~~~ll~~ga----------- 61 (169)
T 4gpm_A 3 ELGKRLIEAAENGNKDRVKDLIENG----ADVNAS-----DS-DGRTPLHHAAENGHKEVVKLLISKGA----------- 61 (169)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTT----CCTTCC-----CT-TSCCHHHHHHHTTCHHHHHHHHHTTC-----------
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHCC----CCCCCC-----CC-CCCCHHHHHHHCCCHHHHHHHHHCCC-----------
T ss_conf 7789999999958999999999878----998884-----99-98989999998499999999983153-----------
Q ss_pred CCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHCCC
Q ss_conf 8997899999919999982299587999983799998999887568899998999999729999999999732013
Q 001453 898 FPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADR 973 (1075)
Q Consensus 898 fdpna~d~~G~TPLHlAA~~~g~e~IVeLLL~~p~~iG~~AdvNarD~~G~TPLHyAa~rGn~eiIeLLl~K~a~~ 973 (1075)
+++.++..|+||||+|+.. |+.+++++|++. +|++|.+|.+|.||||||+..|+.+++++|+++.++.
T Consensus 62 -d~~~~d~~g~TpLh~A~~~-g~~~~v~~Ll~~------gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~ 129 (169)
T 4gpm_A 62 -DVNAKDSDGRTPLHHAAEN-GHKEVVKLLISK------GADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADV 129 (169)
T ss_dssp -CTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHT------TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred -CHHHHCCCCCCHHHHHHHC-CCHHHHHHHHHC------CCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCC
T ss_conf -1133035799999999993-979999999987------6999987999998999999859899999999869974
No 8
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=1.00 E-value=1 Score=156.28 Aligned_cols=144 Identities=19% Similarity=0.131 Sum_probs=117.6
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCHHHHHHHHC---CCHHHHHHHHHCCCCCCCCCC
Q ss_conf 32346899998429613589999998825666788877788630264399999981---999999999872898999999
Q 001453 817 SRFKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKM---KCRRMVDLLIHYSLTSSNDTP 893 (1075)
Q Consensus 817 ~RfktLL~FAvdrGwcAVvK~LLd~l~~g~v~i~~~spe~~~~~~g~TlLH~AV~~---g~~~iVeLLL~~gA~~~dgsa 893 (1075)
...-..|+.|+..+....++.++..+.+ +............|.||||+|+.. ++.++|++||++|+
T Consensus 128 ~~~l~~l~~a~~~~d~~~~~~ll~~g~~----~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga------- 196 (278)
T 1dcq_A 128 AAKLHSLCEAVKTRDIFGLLQAYADGVD----LTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSG------- 196 (278)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTTCC----TTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCS-------
T ss_pred CHHHHHHHHHHHHCCCHHHHHHHHHHCC----HHHHCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHCCC-------
T ss_conf 0245566667652000889999983010----13320123456678874058887526652899999997799-------
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHCCC
Q ss_conf 87678997899999919999982299587999983799998999887568899998999999729999999999732013
Q 001453 894 QKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADR 973 (1075)
Q Consensus 894 ~~ylfdpna~d~~G~TPLHlAA~~~g~e~IVeLLL~~p~~iG~~AdvNarD~~G~TPLHyAa~rGn~eiIeLLl~K~a~~ 973 (1075)
++|.++..|.||||+|+.. |+.+++++|++. +|+++++|.+|.||||+|+..|+.+++++|+++.+++
T Consensus 197 -----~in~~d~~g~TpLh~A~~~-g~~~~v~~Ll~~------gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~ 264 (278)
T 1dcq_A 197 -----NLDKQTGKGSTALHYCCLT-DNAECLKLLLRG------KASIEIANESGETPLDIAKRLKHEHCEELLTQALSGR 264 (278)
T ss_dssp -----CTTCCCTTCCCHHHHHHHT-TCHHHHHHHHHT------TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred -----CCCCCCCCCCCHHHHHHHC-CCHHHHHHHHHC------CCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCC
T ss_conf -----7514289989789999982-989999999976------9898775689998999998839889999999807998
Q ss_pred CCCCEEEEEC
Q ss_conf 6991112007
Q 001453 974 RNGQVTIPVG 983 (1075)
Q Consensus 974 ~~~~v~l~i~ 983 (1075)
.+.|+.+.+.
T Consensus 265 ~~~~~~v~~~ 274 (278)
T 1dcq_A 265 FNSHVHVEYE 274 (278)
T ss_dssp CCSSCCCCCC
T ss_pred CCCCEEEECC
T ss_conf 7765356212
No 9
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=1.00 E-value=1 Score=155.92 Aligned_cols=131 Identities=16% Similarity=0.137 Sum_probs=109.6
Q ss_pred HHHHHHHHHHCC--CCHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 346899998429--613589999998825666788877788630264399999981999999999872898999999876
Q 001453 819 FKFLLVFSVDRG--CCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKY 896 (1075)
Q Consensus 819 fktLL~FAvdrG--wcAVvK~LLd~l~~g~v~i~~~spe~~~~~~g~TlLH~AV~~g~~~iVeLLL~~gA~~~dgsa~~y 896 (1075)
-.++|++|+..| +.++++.||+.+++ ++.. +. .+.||||+|+..|+.++|++||+++++..
T Consensus 138 g~t~L~~A~~~g~~~~~~v~~Ll~~ga~----~~~~-----d~-~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~------- 200 (364)
T 3ljn_A 138 GQTALHWCVGLGPEYLEMIKILVQLGAS----PTAK-----DK-ADETPLMRAMEFRNREALDLMMDTVPSKS------- 200 (364)
T ss_dssp CCCHHHHHHHSCGGGHHHHHHHHHHTCC----TTCC-----CT-TSCCHHHHHHHTTCHHHHHHHHHHCSCSS-------
T ss_pred CCCHHHHHHHCCCCHHHHHHHHHHCCCC----CCCC-----CC-CCCCHHHHHHHCCCHHHHHHHHHCCCCCC-------
T ss_conf 9878999997499669999999976999----7362-----88-99989999998298999999986055412-------
Q ss_pred CCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHCCC
Q ss_conf 78997899999919999982299587999983799998999887568899998999999729999999999732013
Q 001453 897 IFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADR 973 (1075)
Q Consensus 897 lfdpna~d~~G~TPLHlAA~~~g~e~IVeLLL~~p~~iG~~AdvNarD~~G~TPLHyAa~rGn~eiIeLLl~K~a~~ 973 (1075)
..++|.++..|.||||+|+.. |+.+++++|++. +|+++.+|..|.||||+|+..|+.+++++|+++.++.
T Consensus 201 ~~~~~~~~~~g~t~L~~A~~~-g~~~~v~~Ll~~------gad~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~ 270 (364)
T 3ljn_A 201 SLRLDYANKQGNSHLHWAILI-NWEDVAMRFVEM------GIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVF 270 (364)
T ss_dssp SCCTTCCCTTCCCTTHHHHTT-TCHHHHHHHHTT------TCCTTCCCTTSCCHHHHHHHTCCHHHHHHHHHHSCHH
T ss_pred CCCCCCCCCCCCCHHHHHHHC-CCHHHHHHHHHC------CCCCCCCCCCCCCHHHHHHHHCHHHHHHHHHHCCCCH
T ss_conf 355523288998099999975-988999999986------9998887999998899999838299999999748805
No 10
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=1.00 E-value=1 Score=154.40 Aligned_cols=135 Identities=21% Similarity=0.135 Sum_probs=102.7
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHH-HCC-CCCCCCCHHHHH---------------------------HHCCCHHHHHH
Q ss_conf 3468999984296135899999988-256-667888777886---------------------------30264399999
Q 001453 819 FKFLLVFSVDRGCCALVKAILDILV-EGN-LSMDGLSRESLE---------------------------MLWEIQLLNRA 869 (1075)
Q Consensus 819 fktLL~FAvdrGwcAVvK~LLd~l~-~g~-v~i~~~spe~~~---------------------------~~~g~TlLH~A 869 (1075)
-.++|++|+..|+..+++.||+.+. +-+ .+.....+.... ...|.||||+|
T Consensus 111 g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpLh~A 190 (276)
T 4hbd_A 111 GNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNINAKASQAGQTALMLA 190 (276)
T ss_dssp SCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTTCCCTTTCCCHHHHH
T ss_pred CCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHH
T ss_conf 98799999877999999999977997677888899988999999886302159999999976997646698998799999
Q ss_pred HHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHC-CCCCCCCCCCCCCCCCCCC
Q ss_conf 981999999999872898999999876789978999999199999822995879999837-9999899988756889999
Q 001453 870 VKMKCRRMVDLLIHYSLTSSNDTPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTN-DPQEIGPSSWNSILDASGH 948 (1075)
Q Consensus 870 V~~g~~~iVeLLL~~gA~~~dgsa~~ylfdpna~d~~G~TPLHlAA~~~g~e~IVeLLL~-~p~~iG~~AdvNarD~~G~ 948 (1075)
+..|+.++|++||++|+ ++|.++..|.||||+|+.. |+.+++++|++ . +++++++|..|.
T Consensus 191 ~~~g~~~~v~~Ll~~ga------------d~n~~d~~G~TpLh~A~~~-g~~~iv~~Ll~~~------gad~~~~d~~g~ 251 (276)
T 4hbd_A 191 VSHGRVDVVKALLACEA------------DVNVQDDDGSTALMCACEH-GHKEIAGLLLAVP------SCDISLTDRDGS 251 (276)
T ss_dssp HHTTCHHHHHHHHHTTC------------CTTCCCTTSCCHHHHHHHH-TCHHHHHHHHTST------TCCTTCCCTTSC
T ss_pred HHCCCHHHHHHHHHCCC------------CCCCCCCCCCCHHHHHHHC-CCHHHHHHHHHCC------CCCCCCCCCCCC
T ss_conf 98699999999996799------------9988799999899999987-8899999998067------999727489998
Q ss_pred CHHHHHHHCCCHHHHHHHHHHHCC
Q ss_conf 899999972999999999973201
Q 001453 949 SPYSYALMKNNHAYNKLVARKLAD 972 (1075)
Q Consensus 949 TPLHyAa~rGn~eiIeLLl~K~a~ 972 (1075)
||||+|+.+|+.+++++|+++...
T Consensus 252 TpL~~A~~~g~~~iv~~Ll~~~~i 275 (276)
T 4hbd_A 252 TALMVALDAGQSEIASMLYSRMNI 275 (276)
T ss_dssp CHHHHHHHHTCHHHHHHHHHHCCC
T ss_pred CHHHHHHHCCCHHHHHHHHHCCCC
T ss_conf 999999986989999999863199
Done!