Query 001454
Match_columns 1075
No_of_seqs 349 out of 357
Neff 4.0
Searched_HMMs 46136
Date Fri Mar 29 01:13:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001454.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001454hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.7 1.6E-17 3.4E-22 181.1 13.6 140 486-634 2-155 (352)
2 TIGR01659 sex-lethal sex-letha 99.7 3.6E-17 7.7E-22 182.7 13.7 142 484-634 104-259 (346)
3 TIGR01628 PABP-1234 polyadenyl 99.7 8.4E-17 1.8E-21 187.6 13.4 193 489-692 2-211 (562)
4 KOG0107 Alternative splicing f 99.7 2.3E-17 5E-22 167.7 6.8 68 487-554 10-82 (195)
5 TIGR01628 PABP-1234 polyadenyl 99.7 8.3E-16 1.8E-20 179.3 18.3 148 486-635 87-244 (562)
6 TIGR01645 half-pint poly-U bin 99.6 9.6E-16 2.1E-20 181.2 14.6 149 486-634 106-270 (612)
7 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.6 1.3E-15 2.9E-20 175.8 14.7 150 486-635 1-159 (481)
8 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.6 5.1E-15 1.1E-19 170.9 15.3 152 484-635 272-461 (481)
9 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.6 5.3E-15 1.1E-19 161.5 14.5 149 487-635 89-336 (352)
10 TIGR01622 SF-CC1 splicing fact 99.6 9.1E-15 2E-19 165.7 13.7 148 485-634 87-252 (457)
11 TIGR01648 hnRNP-R-Q heterogene 99.6 9.8E-15 2.1E-19 172.1 13.9 133 487-632 58-204 (578)
12 TIGR01642 U2AF_lg U2 snRNP aux 99.6 2E-14 4.3E-19 164.8 13.7 151 483-634 171-361 (509)
13 KOG0117 Heterogeneous nuclear 99.6 1.2E-14 2.5E-19 163.6 11.1 133 485-630 81-228 (506)
14 TIGR01642 U2AF_lg U2 snRNP aux 99.5 5.2E-14 1.1E-18 161.4 14.9 151 484-634 292-488 (509)
15 TIGR01622 SF-CC1 splicing fact 99.5 5E-14 1.1E-18 159.7 14.4 150 485-634 184-434 (457)
16 KOG1924 RhoA GTPase effector D 99.5 1.7E-14 3.7E-19 169.4 10.1 85 960-1052 639-736 (1102)
17 TIGR01648 hnRNP-R-Q heterogene 99.5 2.4E-13 5.2E-18 160.6 13.9 143 485-635 136-294 (578)
18 KOG0148 Apoptosis-promoting RN 99.5 1.7E-13 3.7E-18 147.1 10.7 147 485-636 60-226 (321)
19 KOG0105 Alternative splicing f 99.4 1.6E-12 3.5E-17 133.8 10.8 144 486-632 5-172 (241)
20 KOG0144 RNA-binding protein CU 99.3 3.6E-12 7.8E-17 143.4 8.8 142 487-636 34-191 (510)
21 PLN03134 glycine-rich RNA-bind 99.2 4.3E-11 9.2E-16 119.2 9.6 72 485-556 32-113 (144)
22 KOG0132 RNA polymerase II C-te 99.2 2.2E-09 4.8E-14 127.6 25.2 63 486-548 420-482 (894)
23 PF00076 RRM_1: RNA recognitio 99.2 3.1E-11 6.7E-16 101.6 6.9 60 490-549 1-65 (70)
24 KOG0117 Heterogeneous nuclear 99.2 6.7E-11 1.5E-15 133.8 11.2 205 408-636 91-319 (506)
25 KOG0145 RNA-binding protein EL 99.2 5.9E-11 1.3E-15 127.2 10.0 140 487-635 41-194 (360)
26 PF14259 RRM_6: RNA recognitio 99.0 1.1E-09 2.3E-14 94.0 6.9 60 490-549 1-65 (70)
27 KOG0124 Polypyrimidine tract-b 99.0 6.8E-10 1.5E-14 123.2 6.8 148 487-634 113-276 (544)
28 KOG0106 Alternative splicing f 98.9 1.6E-09 3.4E-14 115.0 6.7 142 488-635 2-158 (216)
29 KOG0131 Splicing factor 3b, su 98.9 5.3E-09 1.1E-13 108.1 10.2 143 487-635 9-164 (203)
30 smart00362 RRM_2 RNA recogniti 98.9 5.8E-09 1.3E-13 85.7 8.2 61 489-549 1-65 (72)
31 PLN03120 nucleic acid binding 98.9 3.6E-09 7.8E-14 114.8 8.5 123 487-614 4-138 (260)
32 KOG0123 Polyadenylate-binding 98.8 1.3E-08 2.9E-13 115.5 11.5 132 488-635 2-140 (369)
33 KOG0109 RNA-binding protein LA 98.8 4.2E-09 9.2E-14 114.7 6.9 131 489-634 4-136 (346)
34 TIGR01659 sex-lethal sex-letha 98.8 7.7E-09 1.7E-13 116.4 8.9 72 486-557 192-275 (346)
35 COG0724 RNA-binding proteins ( 98.8 6.4E-08 1.4E-12 96.8 12.8 114 487-600 115-253 (306)
36 TIGR01645 half-pint poly-U bin 98.8 1.8E-08 3.8E-13 120.4 9.1 64 486-549 203-272 (612)
37 KOG0122 Translation initiation 98.7 2.2E-08 4.8E-13 107.3 8.6 72 486-557 188-269 (270)
38 KOG0113 U1 small nuclear ribon 98.7 2.8E-08 6.1E-13 108.8 7.9 77 471-549 87-169 (335)
39 PF13893 RRM_5: RNA recognitio 98.7 3.7E-08 8E-13 82.2 6.9 46 504-549 1-47 (56)
40 PLN03213 repressor of silencin 98.7 3E-08 6.5E-13 113.5 8.0 70 487-556 10-87 (759)
41 KOG0121 Nuclear cap-binding pr 98.7 2.6E-08 5.7E-13 98.4 6.5 103 480-595 29-141 (153)
42 cd00590 RRM RRM (RNA recogniti 98.7 7.7E-08 1.7E-12 79.4 8.2 61 489-549 1-66 (74)
43 smart00360 RRM RNA recognition 98.7 6E-08 1.3E-12 79.2 7.3 58 492-549 1-64 (71)
44 KOG0111 Cyclophilin-type pepti 98.7 1.2E-08 2.5E-13 108.0 3.9 93 486-594 9-111 (298)
45 KOG0114 Predicted RNA-binding 98.7 5.1E-08 1.1E-12 93.6 7.4 63 487-549 18-83 (124)
46 KOG3671 Actin regulatory prote 98.6 7E-06 1.5E-10 95.1 25.3 112 499-634 21-139 (569)
47 KOG0144 RNA-binding protein CU 98.6 2.1E-08 4.5E-13 113.7 5.0 72 485-556 122-205 (510)
48 KOG0110 RNA-binding protein (R 98.6 1.2E-07 2.6E-12 112.7 11.3 150 481-634 510-679 (725)
49 KOG1457 RNA binding protein (c 98.6 1.1E-07 2.3E-12 101.1 9.7 150 486-635 33-273 (284)
50 KOG0148 Apoptosis-promoting RN 98.6 5.7E-08 1.2E-12 105.4 7.5 64 486-549 163-226 (321)
51 PLN03121 nucleic acid binding 98.6 8.8E-08 1.9E-12 103.1 8.7 68 487-555 5-77 (243)
52 KOG4206 Spliceosomal protein s 98.6 4.5E-07 9.8E-12 96.4 12.7 153 482-635 4-208 (221)
53 KOG4207 Predicted splicing fac 98.5 6.8E-08 1.5E-12 101.6 5.2 69 488-556 14-92 (256)
54 KOG1924 RhoA GTPase effector D 98.4 8E-07 1.7E-11 106.3 10.6 25 924-948 625-649 (1102)
55 KOG0123 Polyadenylate-binding 98.4 6.7E-07 1.4E-11 101.9 9.6 148 488-635 168-336 (369)
56 KOG0125 Ataxin 2-binding prote 98.4 3.4E-07 7.5E-12 101.4 6.7 70 487-556 96-171 (376)
57 KOG0151 Predicted splicing reg 98.4 3.9E-07 8.4E-12 108.2 6.8 64 486-549 173-245 (877)
58 KOG0145 RNA-binding protein EL 98.3 2.4E-06 5.2E-11 92.6 10.8 149 487-635 127-345 (360)
59 KOG0112 Large RNA-binding prot 98.3 2.1E-07 4.6E-12 112.6 2.5 139 482-634 367-515 (975)
60 KOG0146 RNA-binding protein ET 98.2 1.5E-06 3.3E-11 94.4 5.5 108 486-629 18-138 (371)
61 KOG4660 Protein Mei2, essentia 98.2 1E-06 2.2E-11 103.0 4.1 68 485-552 73-143 (549)
62 smart00361 RRM_1 RNA recogniti 98.2 4.2E-06 9.2E-11 73.4 6.5 49 501-549 2-63 (70)
63 KOG0127 Nucleolar protein fibr 98.2 7.3E-06 1.6E-10 95.7 10.1 148 488-635 6-183 (678)
64 KOG0153 Predicted RNA-binding 98.1 4.2E-06 9.1E-11 93.6 6.8 64 486-549 227-290 (377)
65 PHA03247 large tegument protei 98.1 0.00022 4.7E-09 94.4 21.6 27 85-111 1761-1788(3151)
66 KOG0149 Predicted RNA-binding 98.0 6.3E-06 1.4E-10 88.5 5.9 57 488-544 13-75 (247)
67 KOG0108 mRNA cleavage and poly 98.0 8.9E-06 1.9E-10 94.5 7.4 62 488-549 19-86 (435)
68 KOG0109 RNA-binding protein LA 98.0 5.5E-06 1.2E-10 91.0 5.2 96 485-587 76-175 (346)
69 KOG4205 RNA-binding protein mu 98.0 9.5E-06 2.1E-10 90.8 6.1 131 486-626 5-155 (311)
70 PHA03247 large tegument protei 97.9 0.00049 1.1E-08 91.4 20.0 8 570-577 2406-2413(3151)
71 KOG0110 RNA-binding protein (R 97.9 3.1E-05 6.8E-10 92.8 8.3 147 488-635 386-585 (725)
72 KOG0130 RNA-binding protein RB 97.9 2.3E-05 5E-10 78.6 5.9 65 490-554 75-149 (170)
73 KOG1190 Polypyrimidine tract-b 97.8 9.2E-05 2E-09 84.5 11.1 145 487-634 297-476 (492)
74 KOG0126 Predicted RNA-binding 97.6 6.7E-06 1.4E-10 85.7 -1.5 66 484-549 32-103 (219)
75 KOG0127 Nucleolar protein fibr 97.6 0.00046 1E-08 81.2 12.0 145 486-630 116-354 (678)
76 KOG0120 Splicing factor U2AF, 97.6 0.00016 3.4E-09 85.3 8.4 76 474-549 276-357 (500)
77 KOG0147 Transcriptional coacti 97.6 6.3E-05 1.4E-09 88.3 5.0 145 487-632 179-342 (549)
78 KOG0147 Transcriptional coacti 97.6 5.4E-05 1.2E-09 88.8 4.3 60 487-546 278-343 (549)
79 KOG1457 RNA binding protein (c 97.4 9.3E-05 2E-09 79.3 3.5 65 484-548 207-273 (284)
80 KOG4208 Nucleolar RNA-binding 97.4 0.0003 6.4E-09 74.8 6.5 70 487-556 49-129 (214)
81 KOG1456 Heterogeneous nuclear 97.4 0.00048 1E-08 78.2 8.2 140 485-635 29-184 (494)
82 KOG0131 Splicing factor 3b, su 97.3 0.00031 6.7E-09 73.6 5.4 68 487-554 96-174 (203)
83 KOG0415 Predicted peptidyl pro 97.2 0.00053 1.1E-08 77.4 6.3 84 471-554 223-316 (479)
84 PF00076 RRM_1: RNA recognitio 97.1 0.00052 1.1E-08 57.8 3.8 60 575-634 1-63 (70)
85 KOG0116 RasGAP SH3 binding pro 97.1 0.00055 1.2E-08 79.7 4.9 58 486-543 287-350 (419)
86 KOG0132 RNA polymerase II C-te 97.1 0.053 1.2E-06 66.7 21.3 61 570-632 419-479 (894)
87 KOG4209 Splicing factor RNPS1, 96.9 0.00087 1.9E-08 72.6 4.3 62 487-549 101-168 (231)
88 PF14259 RRM_6: RNA recognitio 96.9 0.0014 2.9E-08 56.4 4.5 58 575-632 1-61 (70)
89 PLN03134 glycine-rich RNA-bind 96.8 0.0017 3.6E-08 65.4 5.5 66 569-634 31-100 (144)
90 PF07744 SPOC: SPOC domain; I 96.8 2.7E-05 5.8E-10 74.0 -7.0 100 930-1030 1-107 (119)
91 KOG0112 Large RNA-binding prot 96.8 0.0011 2.4E-08 81.6 4.8 74 483-556 451-530 (975)
92 KOG4212 RNA-binding protein hn 96.8 0.007 1.5E-07 70.2 10.6 153 475-632 37-278 (608)
93 KOG3671 Actin regulatory prote 96.8 0.024 5.1E-07 66.9 14.9 46 501-546 92-138 (569)
94 KOG0226 RNA-binding proteins [ 96.8 0.0015 3.3E-08 71.4 5.0 64 486-549 189-258 (290)
95 KOG0107 Alternative splicing f 96.7 0.0015 3.3E-08 68.3 4.1 63 572-635 10-72 (195)
96 KOG1190 Polypyrimidine tract-b 96.6 0.0028 6.1E-08 72.9 5.8 76 481-556 408-490 (492)
97 KOG1548 Transcription elongati 96.4 0.025 5.4E-07 64.4 11.5 149 486-634 133-338 (382)
98 KOG0533 RRM motif-containing p 96.4 0.0055 1.2E-07 67.1 5.9 60 488-547 84-148 (243)
99 KOG0146 RNA-binding protein ET 96.3 0.0049 1.1E-07 67.9 5.3 70 485-554 283-360 (371)
100 KOG4211 Splicing factor hnRNP- 96.3 0.041 8.9E-07 64.9 12.6 137 488-632 11-167 (510)
101 KOG4454 RNA binding protein (R 96.2 0.0021 4.5E-08 69.2 1.9 65 485-549 7-75 (267)
102 KOG0124 Polypyrimidine tract-b 96.2 0.0062 1.3E-07 69.3 5.5 62 485-546 208-275 (544)
103 KOG0129 Predicted RNA-binding 96.2 0.23 5.1E-06 59.1 18.2 155 471-629 243-432 (520)
104 KOG4206 Spliceosomal protein s 96.2 0.011 2.3E-07 63.9 6.8 72 483-554 142-219 (221)
105 KOG1923 Rac1 GTPase effector F 96.0 0.021 4.5E-07 70.1 8.7 17 1053-1070 473-489 (830)
106 smart00362 RRM_2 RNA recogniti 96.0 0.013 2.8E-07 48.0 4.9 60 574-633 1-62 (72)
107 KOG1830 Wiskott Aldrich syndro 95.9 0.3 6.5E-06 57.1 17.0 18 1032-1049 492-509 (518)
108 PF04059 RRM_2: RNA recognitio 95.9 0.026 5.6E-07 54.2 7.4 69 489-557 3-87 (97)
109 KOG0121 Nuclear cap-binding pr 95.9 0.0079 1.7E-07 60.6 4.0 67 570-636 34-104 (153)
110 cd00590 RRM RRM (RNA recogniti 95.9 0.013 2.9E-07 48.2 4.7 61 574-634 1-64 (74)
111 KOG1456 Heterogeneous nuclear 95.9 0.094 2E-06 60.3 12.6 150 486-636 286-473 (494)
112 KOG2193 IGF-II mRNA-binding pr 95.7 0.0071 1.5E-07 69.9 3.4 135 488-635 2-144 (584)
113 PRK15319 AIDA autotransporter- 95.7 0.012 2.7E-07 77.4 5.7 6 471-476 1186-1191(2039)
114 KOG0120 Splicing factor U2AF, 95.6 0.018 3.9E-07 68.6 5.9 153 481-634 169-355 (500)
115 KOG4205 RNA-binding protein mu 95.4 0.011 2.3E-07 67.0 3.2 53 486-539 96-154 (311)
116 KOG1925 Rac1 GTPase effector F 95.4 0.024 5.3E-07 66.8 6.0 121 912-1049 271-404 (817)
117 KOG1923 Rac1 GTPase effector F 95.3 0.055 1.2E-06 66.6 8.8 18 1032-1049 476-493 (830)
118 PLN03120 nucleic acid binding 95.0 0.029 6.4E-07 62.1 5.0 63 572-635 4-67 (260)
119 smart00360 RRM RNA recognition 95.0 0.03 6.5E-07 45.6 3.8 57 577-633 1-61 (71)
120 KOG4672 Uncharacterized conser 94.9 0.12 2.5E-06 60.2 9.4 11 585-595 48-58 (487)
121 KOG1365 RNA-binding protein Fu 94.8 0.6 1.3E-05 54.2 14.8 143 492-634 166-348 (508)
122 COG0724 RNA-binding proteins ( 94.8 0.039 8.4E-07 55.6 4.9 63 572-634 115-181 (306)
123 KOG4661 Hsp27-ERE-TATA-binding 94.7 0.044 9.5E-07 65.4 5.6 65 484-548 402-472 (940)
124 KOG4849 mRNA cleavage factor I 94.6 0.65 1.4E-05 53.4 14.2 58 573-630 81-144 (498)
125 KOG0128 RNA-binding protein SA 94.4 0.01 2.2E-07 73.3 -0.3 134 475-630 655-797 (881)
126 PF14605 Nup35_RRM_2: Nup53/35 94.2 0.084 1.8E-06 45.2 4.8 50 490-540 4-53 (53)
127 KOG4212 RNA-binding protein hn 94.2 0.078 1.7E-06 61.9 6.0 70 480-549 529-599 (608)
128 KOG0108 mRNA cleavage and poly 94.2 0.051 1.1E-06 64.0 4.7 62 573-634 19-84 (435)
129 KOG1855 Predicted RNA-binding 94.1 0.036 7.9E-07 64.5 3.1 65 486-550 230-313 (484)
130 KOG0106 Alternative splicing f 94.0 0.034 7.4E-07 60.2 2.7 61 487-549 99-159 (216)
131 PF08777 RRM_3: RNA binding mo 93.8 0.12 2.6E-06 50.0 5.7 57 488-544 2-58 (105)
132 KOG2314 Translation initiation 93.3 0.084 1.8E-06 63.2 4.4 70 468-549 57-131 (698)
133 KOG1548 Transcription elongati 93.1 0.14 3.1E-06 58.5 5.6 48 501-548 290-339 (382)
134 KOG4574 RNA-binding protein (c 92.9 0.069 1.5E-06 66.3 3.1 77 481-557 292-374 (1007)
135 KOG1984 Vesicle coat complex C 91.9 8.2 0.00018 49.2 18.7 12 1032-1043 441-452 (1007)
136 PF15023 DUF4523: Protein of u 91.9 0.25 5.4E-06 50.9 5.1 55 494-549 97-151 (166)
137 PF13893 RRM_5: RNA recognitio 91.8 0.19 4E-06 42.0 3.5 44 589-634 1-45 (56)
138 KOG0114 Predicted RNA-binding 91.6 0.24 5.2E-06 48.8 4.4 64 571-634 17-81 (124)
139 smart00361 RRM_1 RNA recogniti 91.3 0.2 4.3E-06 44.2 3.3 48 587-634 3-61 (70)
140 KOG2416 Acinus (induces apopto 90.9 0.14 3E-06 61.8 2.4 70 486-556 443-521 (718)
141 KOG1830 Wiskott Aldrich syndro 90.3 9.7 0.00021 45.3 16.3 15 514-528 145-159 (518)
142 KOG4672 Uncharacterized conser 90.0 1.5 3.3E-05 51.4 9.6 11 844-854 315-325 (487)
143 KOG1996 mRNA splicing factor [ 89.4 0.56 1.2E-05 52.9 5.4 50 500-549 299-355 (378)
144 PF15449 Retinal: Retinal prot 89.3 7.1 0.00015 50.7 15.2 31 168-198 227-257 (1287)
145 PLN03121 nucleic acid binding 89.3 0.47 1E-05 52.3 4.7 62 573-635 6-68 (243)
146 KOG4676 Splicing factor, argin 89.1 0.58 1.3E-05 54.5 5.4 143 489-634 9-213 (479)
147 KOG3152 TBP-binding protein, a 88.7 0.26 5.7E-06 54.6 2.3 64 486-549 73-154 (278)
148 KOG0130 RNA-binding protein RB 87.8 0.68 1.5E-05 47.5 4.4 64 571-634 71-138 (170)
149 KOG4210 Nuclear localization s 87.0 0.96 2.1E-05 50.9 5.5 144 486-629 87-246 (285)
150 PRK15313 autotransport protein 87.0 0.98 2.1E-05 57.6 6.0 10 485-494 181-190 (955)
151 PLN03213 repressor of silencin 86.3 0.91 2E-05 54.1 5.0 62 571-632 9-72 (759)
152 PF04847 Calcipressin: Calcipr 86.3 1.5 3.3E-05 46.6 6.2 58 499-556 7-70 (184)
153 KOG4210 Nuclear localization s 86.1 0.49 1.1E-05 53.2 2.7 71 486-557 184-264 (285)
154 KOG0111 Cyclophilin-type pepti 84.7 0.63 1.4E-05 50.9 2.5 59 571-632 9-74 (298)
155 KOG0119 Splicing factor 1/bran 84.4 18 0.00039 43.8 14.2 15 618-632 215-229 (554)
156 KOG2202 U2 snRNP splicing fact 84.2 0.48 1.1E-05 52.5 1.4 47 502-548 83-135 (260)
157 KOG1922 Rho GTPase effector BN 83.4 8.4 0.00018 49.0 11.9 55 1002-1056 464-527 (833)
158 KOG0391 SNF2 family DNA-depend 82.6 15 0.00033 48.5 13.3 78 116-193 1085-1182(1958)
159 KOG2236 Uncharacterized conser 82.6 6.1 0.00013 47.3 9.4 14 299-312 82-95 (483)
160 PRK09752 adhesin; Provisional 81.9 1.3 2.9E-05 57.6 4.2 11 39-49 50-60 (1250)
161 KOG0105 Alternative splicing f 81.8 0.94 2E-05 48.6 2.3 62 571-632 5-67 (241)
162 KOG0307 Vesicle coat complex C 80.5 31 0.00068 45.2 15.1 26 572-597 495-523 (1049)
163 KOG4307 RNA binding protein RB 80.3 4.4 9.5E-05 50.4 7.4 68 489-556 869-943 (944)
164 KOG0566 Inositol-1,4,5-triphos 79.9 10 0.00022 48.9 10.5 48 106-153 94-157 (1080)
165 KOG0391 SNF2 family DNA-depend 78.9 42 0.00092 44.8 15.4 15 468-482 1347-1362(1958)
166 PF05172 Nup35_RRM: Nup53/35/4 78.6 4 8.6E-05 39.7 5.3 48 494-542 13-73 (100)
167 PF07174 FAP: Fibronectin-atta 76.8 18 0.0004 41.0 10.3 19 930-949 127-145 (297)
168 KOG0307 Vesicle coat complex C 76.3 47 0.001 43.7 14.9 8 474-481 361-368 (1049)
169 KOG0151 Predicted splicing reg 75.6 2.7 5.8E-05 52.2 3.9 64 571-634 173-243 (877)
170 PF11608 Limkain-b1: Limkain b 74.2 7.9 0.00017 37.2 5.8 57 489-549 4-65 (90)
171 PF05518 Totivirus_coat: Totiv 73.9 35 0.00075 43.5 12.7 12 129-140 81-92 (759)
172 KOG0115 RNA-binding protein p5 73.8 3.2 6.9E-05 46.5 3.6 59 485-543 29-92 (275)
173 KOG1985 Vesicle coat complex C 73.6 49 0.0011 42.5 13.8 16 952-967 244-259 (887)
174 PF03467 Smg4_UPF3: Smg-4/UPF3 73.2 4.1 8.8E-05 42.9 4.1 61 487-547 7-79 (176)
175 PRK14950 DNA polymerase III su 72.7 7.4 0.00016 47.8 6.8 10 926-935 467-476 (585)
176 PF03276 Gag_spuma: Spumavirus 71.1 14 0.00029 45.3 8.1 17 981-999 294-310 (582)
177 KOG0566 Inositol-1,4,5-triphos 70.8 37 0.00081 44.1 12.0 54 103-156 83-137 (1080)
178 KOG1922 Rho GTPase effector BN 70.1 8.5 0.00018 48.9 6.7 7 926-932 397-403 (833)
179 KOG2675 Adenylate cyclase-asso 69.4 3.8 8.3E-05 48.6 3.2 23 572-594 38-61 (480)
180 KOG0115 RNA-binding protein p5 69.2 12 0.00026 42.2 6.6 81 535-631 6-93 (275)
181 KOG4660 Protein Mei2, essentia 68.9 5.1 0.00011 48.7 4.1 65 570-635 73-137 (549)
182 KOG2591 c-Mpl binding protein, 68.7 10 0.00022 46.3 6.5 78 474-552 162-249 (684)
183 KOG4208 Nucleolar RNA-binding 67.6 6.7 0.00015 42.8 4.3 64 571-634 48-116 (214)
184 KOG0113 U1 small nuclear ribon 67.1 7.4 0.00016 44.5 4.7 62 571-632 100-165 (335)
185 KOG0122 Translation initiation 67.0 9.9 0.00022 42.5 5.5 64 571-634 188-255 (270)
186 KOG4849 mRNA cleavage factor I 65.8 25 0.00054 41.2 8.5 57 490-546 83-147 (498)
187 KOG2893 Zn finger protein [Gen 62.6 52 0.0011 37.0 9.8 7 813-819 119-125 (341)
188 KOG2391 Vacuolar sorting prote 60.3 19 0.00041 42.0 6.3 9 837-845 112-120 (365)
189 COG5175 MOT2 Transcriptional r 59.4 12 0.00027 43.3 4.7 62 487-548 114-190 (480)
190 KOG0116 RasGAP SH3 binding pro 59.3 9 0.00019 45.7 3.8 56 574-629 290-349 (419)
191 KOG2236 Uncharacterized conser 58.8 25 0.00054 42.4 7.2 12 504-515 247-258 (483)
192 KOG0226 RNA-binding proteins [ 58.4 13 0.00027 42.0 4.4 141 485-634 94-256 (290)
193 KOG0125 Ataxin 2-binding prote 58.1 12 0.00026 43.4 4.3 65 572-636 96-162 (376)
194 PF15449 Retinal: Retinal prot 55.3 50 0.0011 43.5 9.3 13 935-947 1136-1148(1287)
195 KOG0129 Predicted RNA-binding 53.7 29 0.00062 42.3 6.6 121 471-618 351-484 (520)
196 KOG0119 Splicing factor 1/bran 53.3 1.8E+02 0.0039 35.9 12.9 22 614-635 208-229 (554)
197 KOG0162 Myosin class I heavy c 53.1 35 0.00076 43.3 7.3 51 487-541 579-636 (1106)
198 PF01690 PLRV_ORF5: Potato lea 51.1 16 0.00034 44.1 4.0 14 985-998 185-198 (465)
199 PF03276 Gag_spuma: Spumavirus 50.4 70 0.0015 39.5 9.1 6 683-688 104-109 (582)
200 PF08675 RNA_bind: RNA binding 49.7 64 0.0014 31.2 6.9 62 489-552 10-71 (87)
201 PF15324 TALPID3: Hedgehog sig 47.1 3.3E+02 0.0072 36.5 14.4 18 117-134 93-110 (1252)
202 KOG4454 RNA binding protein (R 46.5 8.5 0.00018 42.5 0.8 73 569-643 6-84 (267)
203 PHA03378 EBNA-3B; Provisional 46.1 3E+02 0.0066 35.3 13.5 19 606-624 390-408 (991)
204 PF05518 Totivirus_coat: Totiv 46.1 2E+02 0.0043 37.2 12.2 18 458-475 279-296 (759)
205 PRK14948 DNA polymerase III su 43.3 74 0.0016 39.9 8.2 16 619-634 324-339 (620)
206 KOG1925 Rac1 GTPase effector F 43.2 25 0.00055 42.8 4.0 27 823-849 186-212 (817)
207 KOG2068 MOT2 transcription fac 41.5 18 0.00039 41.9 2.4 60 488-547 78-149 (327)
208 KOG0149 Predicted RNA-binding 39.3 34 0.00073 38.3 4.0 58 572-629 12-73 (247)
209 PLN02983 biotin carboxyl carri 38.8 98 0.0021 35.4 7.5 15 932-946 223-237 (274)
210 KOG0153 Predicted RNA-binding 38.4 35 0.00076 40.0 4.1 58 570-629 226-283 (377)
211 KOG0162 Myosin class I heavy c 38.3 2.7E+02 0.0059 36.0 11.5 17 7-24 131-147 (1106)
212 KOG4209 Splicing factor RNPS1, 37.1 29 0.00063 38.3 3.1 64 570-634 99-166 (231)
213 PF03154 Atrophin-1: Atrophin- 36.5 1.2E+03 0.026 31.3 18.1 11 744-754 129-139 (982)
214 KOG1995 Conserved Zn-finger pr 36.1 49 0.0011 38.8 4.8 66 484-549 63-142 (351)
215 PF04625 DEC-1_N: DEC-1 protei 35.6 88 0.0019 36.5 6.6 13 956-968 206-218 (407)
216 KOG2546 Abl interactor ABI-1, 35.1 59 0.0013 39.1 5.3 21 571-595 34-54 (483)
217 PRK14954 DNA polymerase III su 34.3 1.1E+02 0.0024 38.5 7.7 14 922-935 458-471 (620)
218 PLN02805 D-lactate dehydrogena 33.8 74 0.0016 39.4 6.1 78 480-557 257-347 (555)
219 KOG2891 Surface glycoprotein [ 33.4 11 0.00025 42.6 -0.7 50 499-548 173-247 (445)
220 KOG1984 Vesicle coat complex C 32.7 1.4E+03 0.029 30.7 19.7 8 843-850 137-144 (1007)
221 KOG2202 U2 snRNP splicing fact 32.4 28 0.0006 39.3 2.0 49 587-635 83-135 (260)
222 PRK07764 DNA polymerase III su 32.0 1.5E+02 0.0033 38.5 8.6 9 926-934 512-520 (824)
223 KOG4410 5-formyltetrahydrofola 31.2 75 0.0016 36.6 5.1 51 476-533 326-377 (396)
224 KOG1785 Tyrosine kinase negati 31.0 1E+02 0.0022 37.0 6.2 67 486-556 221-291 (563)
225 smart00498 FH2 Formin Homology 30.8 32 0.0007 40.7 2.4 92 964-1056 26-138 (432)
226 PF14605 Nup35_RRM_2: Nup53/35 28.8 63 0.0014 27.9 3.2 52 573-627 2-53 (53)
227 PF08777 RRM_3: RNA binding mo 27.7 92 0.002 30.4 4.5 58 573-633 2-60 (105)
228 KOG0559 Dihydrolipoamide succi 27.4 1.8E+02 0.0038 34.8 7.3 10 940-949 248-257 (457)
229 KOG1996 mRNA splicing factor [ 26.9 60 0.0013 37.5 3.5 50 585-634 299-353 (378)
230 PF10567 Nab6_mRNP_bdg: RNA-re 26.7 71 0.0015 36.9 4.0 147 486-634 14-215 (309)
231 PF11608 Limkain-b1: Limkain b 26.5 95 0.0021 30.2 4.2 60 573-635 3-64 (90)
232 KOG4676 Splicing factor, argin 24.2 16 0.00034 43.3 -1.6 71 474-544 138-210 (479)
233 PF08952 DUF1866: Domain of un 23.9 1.8E+02 0.0039 30.6 6.0 46 501-549 50-95 (146)
234 KOG0682 Ammonia permease [Inor 23.3 38 0.00081 41.4 1.1 57 63-133 290-346 (500)
235 PF10309 DUF2414: Protein of u 23.0 3E+02 0.0065 25.1 6.4 52 489-543 7-62 (62)
236 KOG4307 RNA binding protein RB 21.8 3.3E+02 0.0071 35.1 8.4 29 607-635 37-65 (944)
237 PF05918 API5: Apoptosis inhib 21.7 1E+02 0.0023 38.4 4.4 113 5-178 29-141 (556)
238 KOG4285 Mitotic phosphoprotein 21.0 1E+02 0.0022 35.9 3.8 53 490-542 198-251 (350)
239 KOG0415 Predicted peptidyl pro 20.8 1.3E+02 0.0028 35.7 4.7 66 569-634 236-305 (479)
No 1
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.73 E-value=1.6e-17 Score=181.15 Aligned_cols=140 Identities=16% Similarity=0.196 Sum_probs=118.8
Q ss_pred cCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhcCCcee----EEEEee
Q 001454 486 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMD 555 (1075)
Q Consensus 486 ~s~~LWVGnL~~~vte~dL~~~F~~fG~Le~v~~~~------~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~r 555 (1075)
+..+||||||+.+++|+||+++|++||+|.+|++.+ .||||||+|.+.+||.+|++.|+|..+. +|+|++
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 467999999999999999999999999999999854 5699999999999999999999999876 788887
Q ss_pred cCCCCcccccceeccccceEEEccCCCchhHHHHHHhhhcccccCCcee-ec---CCCCCcccccccCHHHHHHHHHHHh
Q 001454 556 VGLGTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TD---LSCEGALLMEFRTPEEATTAMAHLR 631 (1075)
Q Consensus 556 ~~~g~~g~~~g~~~~~s~~lwVG~iss~~~keeLf~E~~k~~~kgp~~f-~d---lser~~LpVEF~s~edA~~A~~~lr 631 (1075)
+... ....+.||||+++.....++|..-+..++....+.+ .+ ...++..+|||++.+||..|+..|+
T Consensus 82 ~~~~---------~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~ 152 (352)
T TIGR01661 82 PSSD---------SIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLN 152 (352)
T ss_pred cccc---------ccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhC
Confidence 6311 123568999999999999999999998775554433 22 3467899999999999999999998
Q ss_pred hcc
Q 001454 632 QHR 634 (1075)
Q Consensus 632 ~~r 634 (1075)
+..
T Consensus 153 g~~ 155 (352)
T TIGR01661 153 GTT 155 (352)
T ss_pred CCc
Confidence 865
No 2
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.72 E-value=3.6e-17 Score=182.69 Aligned_cols=142 Identities=18% Similarity=0.198 Sum_probs=119.3
Q ss_pred cccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhcCCcee----EEEE
Q 001454 484 FSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKF 553 (1075)
Q Consensus 484 ~~~s~~LWVGnL~~~vte~dL~~~F~~fG~Le~v~~~~------~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F 553 (1075)
-...++||||||+.+++|+||+++|+.||+|.+|++.. .||||||+|.+.+||.+|++.|+|..+. +|+|
T Consensus 104 ~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~ 183 (346)
T TIGR01659 104 NNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSY 183 (346)
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeec
Confidence 34678999999999999999999999999999999853 5699999999999999999999999876 6777
Q ss_pred eecCCCCcccccceeccccceEEEccCCCchhHHHHHHhhhcccccCCceee-c---CCCCCcccccccCHHHHHHHHHH
Q 001454 554 MDVGLGTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D---LSCEGALLMEFRTPEEATTAMAH 629 (1075)
Q Consensus 554 ~r~~~g~~g~~~g~~~~~s~~lwVG~iss~~~keeLf~E~~k~~~kgp~~f~-d---lser~~LpVEF~s~edA~~A~~~ 629 (1075)
+++... ......|||++++..+++|+|...+.+++.+..+.+. + ...++.++|||++.|+|..|++.
T Consensus 184 a~p~~~---------~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~ 254 (346)
T TIGR01659 184 ARPGGE---------SIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISA 254 (346)
T ss_pred cccccc---------ccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHH
Confidence 765211 1235679999999999999999999988866555442 2 34457999999999999999999
Q ss_pred Hhhcc
Q 001454 630 LRQHR 634 (1075)
Q Consensus 630 lr~~r 634 (1075)
|++..
T Consensus 255 lng~~ 259 (346)
T TIGR01659 255 LNNVI 259 (346)
T ss_pred hCCCc
Confidence 98764
No 3
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.69 E-value=8.4e-17 Score=187.59 Aligned_cols=193 Identities=17% Similarity=0.185 Sum_probs=137.4
Q ss_pred eEEeccCCCccCHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhcCCcee----EEEEeecCC
Q 001454 489 QLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDVGL 558 (1075)
Q Consensus 489 ~LWVGnL~~~vte~dL~~~F~~fG~Le~v~~~~------~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~r~~~ 558 (1075)
+||||||+.++||++|+++|.+||+|.+|++.+ .+|||||+|.+.+||.+|++.|+++.+. ||.+..+..
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~ 81 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDP 81 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccccc
Confidence 699999999999999999999999999999954 5689999999999999999999999765 666653322
Q ss_pred CCcccccceeccccceEEEccCCCchhHHHHHHhhhcccccCCcee-ec--CCCCCcccccccCHHHHHHHHHHHhhccc
Q 001454 559 GTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TD--LSCEGALLMEFRTPEEATTAMAHLRQHRK 635 (1075)
Q Consensus 559 g~~g~~~g~~~~~s~~lwVG~iss~~~keeLf~E~~k~~~kgp~~f-~d--lser~~LpVEF~s~edA~~A~~~lr~~r~ 635 (1075)
..+ -....+|||++++..++.++|...|.+++.+..+.+ .+ ...++.++|+|++.|+|..|++.|++...
T Consensus 82 ~~~-------~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~~ 154 (562)
T TIGR01628 82 SLR-------RSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDENGKSRGYGFVHFEKEESAKAAIQKVNGMLL 154 (562)
T ss_pred ccc-------ccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecCCCCcccEEEEEECCHHHHHHHHHHhcccEe
Confidence 222 112567999999999999999999999887766654 22 34678999999999999999999988553
Q ss_pred CCCCCCCCCCCCCCCccccccCCCCCCCcceEeecc----ccccccccccCCCCCcccccc
Q 001454 636 SRSNYLPPNTGPANAAMSQIDGARSVPAAPIHVDIR----SNRLGNISAGGFGSPHTAPFH 692 (1075)
Q Consensus 636 erS~~~~r~~~~~~~~v~~~d~~~svPsn~Lwig~p----~~~l~NlA~~~fGei~r~~id 692 (1075)
....+.- +.+.............-++++.-++| ++.|.+ .+..||+|+.+.+.
T Consensus 155 ~~~~i~v---~~~~~~~~~~~~~~~~~~~l~V~nl~~~~tee~L~~-~F~~fG~i~~~~i~ 211 (562)
T TIGR01628 155 NDKEVYV---GRFIKKHEREAAPLKKFTNLYVKNLDPSVNEDKLRE-LFAKFGEITSAAVM 211 (562)
T ss_pred cCceEEE---eccccccccccccccCCCeEEEeCCCCcCCHHHHHH-HHHhcCCEEEEEEE
Confidence 2111100 00000000000001122333444555 555666 67789999887773
No 4
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.69 E-value=2.3e-17 Score=167.72 Aligned_cols=68 Identities=25% Similarity=0.492 Sum_probs=64.4
Q ss_pred CceEEeccCCCccCHHHHHHHhhccCCcceEEEec-cCceEEEEecCHHHHHHHHHhhcCCcee----EEEEe
Q 001454 487 SKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP-IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 554 (1075)
Q Consensus 487 s~~LWVGnL~~~vte~dL~~~F~~fG~Le~v~~~~-~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~ 554 (1075)
.++||||||+++|++.|||.+|.+||+|.+||+++ ++|||||||+|.+||.+|+++|+|+.+| |||+.
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S 82 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELS 82 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecCCCceEEeccCcccHHHHHhhcCCccccCceEEEEee
Confidence 58999999999999999999999999999999998 9999999999999999999999999998 55554
No 5
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.67 E-value=8.3e-16 Score=179.33 Aligned_cols=148 Identities=13% Similarity=0.143 Sum_probs=116.2
Q ss_pred cCceEEeccCCCccCHHHHHHHhhccCCcceEEEec-----cCceEEEEecCHHHHHHHHHhhcCCcee--EEEEeecCC
Q 001454 486 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP-----IKGFALVEYINIIDAIRAREYIRNHFSW--RVKFMDVGL 558 (1075)
Q Consensus 486 ~s~~LWVGnL~~~vte~dL~~~F~~fG~Le~v~~~~-----~rgfAFVeF~~i~DAv~A~~~L~G~~~~--RI~F~r~~~ 558 (1075)
..++|||+||+.++++++|.+.|++||.|.++++.. .||||||+|++.++|.+|++.|+|..+. .|....-..
T Consensus 87 ~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i~v~~~~~ 166 (562)
T TIGR01628 87 GVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDENGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDKEVYVGRFIK 166 (562)
T ss_pred CCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecCCCCcccEEEEEECCHHHHHHHHHHhcccEecCceEEEecccc
Confidence 356899999999999999999999999999999864 5899999999999999999999998765 343321110
Q ss_pred CCcccccceeccccceEEEccCCCchhHHHHHHhhhcccccCCcee-ec--CCCCCcccccccCHHHHHHHHHHHhhccc
Q 001454 559 GTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TD--LSCEGALLMEFRTPEEATTAMAHLRQHRK 635 (1075)
Q Consensus 559 g~~g~~~g~~~~~s~~lwVG~iss~~~keeLf~E~~k~~~kgp~~f-~d--lser~~LpVEF~s~edA~~A~~~lr~~r~ 635 (1075)
.... .+......+.|||++++..+++|+|...+..++.+..+.+ .+ ...++.+||+|++.++|..|++.|+++..
T Consensus 167 ~~~~--~~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~~g~~~G~afV~F~~~e~A~~Av~~l~g~~i 244 (562)
T TIGR01628 167 KHER--EAAPLKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDGSGRSRGFAFVNFEKHEDAAKAVEEMNGKKI 244 (562)
T ss_pred cccc--ccccccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCcEe
Confidence 0000 0112335678999999999999999999998876655544 22 34466899999999999999999987653
No 6
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.65 E-value=9.6e-16 Score=181.15 Aligned_cols=149 Identities=19% Similarity=0.205 Sum_probs=120.8
Q ss_pred cCceEEeccCCCccCHHHHHHHhhccCCcceEEEe------ccCceEEEEecCHHHHHHHHHhhcCCcee--EEEEeecC
Q 001454 486 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF------PIKGFALVEYINIIDAIRAREYIRNHFSW--RVKFMDVG 557 (1075)
Q Consensus 486 ~s~~LWVGnL~~~vte~dL~~~F~~fG~Le~v~~~------~~rgfAFVeF~~i~DAv~A~~~L~G~~~~--RI~F~r~~ 557 (1075)
..|+||||||+.+++|++|+++|++||+|.+|.+. ..||||||+|.+.++|..|++.|+|..+. +|++.++.
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~ 185 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 185 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecccc
Confidence 46899999999999999999999999999999984 27999999999999999999999999876 56665543
Q ss_pred CC--Ccccccc--eeccccceEEEccCCCchhHHHHHHhhhcccccCCcee-ec---CCCCCcccccccCHHHHHHHHHH
Q 001454 558 LG--TKGVING--VAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TD---LSCEGALLMEFRTPEEATTAMAH 629 (1075)
Q Consensus 558 ~g--~~g~~~g--~~~~~s~~lwVG~iss~~~keeLf~E~~k~~~kgp~~f-~d---lser~~LpVEF~s~edA~~A~~~ 629 (1075)
-. .+..... ......+.||||+++..+++|+|...|..++.+..+.+ .+ ...+++.||||++.++|..|+..
T Consensus 186 ~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~a 265 (612)
T TIGR01645 186 NMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIAS 265 (612)
T ss_pred cccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHH
Confidence 11 1110111 11234679999999999999999999998886665544 22 45788999999999999999999
Q ss_pred Hhhcc
Q 001454 630 LRQHR 634 (1075)
Q Consensus 630 lr~~r 634 (1075)
|++..
T Consensus 266 mNg~e 270 (612)
T TIGR01645 266 MNLFD 270 (612)
T ss_pred hCCCe
Confidence 99765
No 7
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.64 E-value=1.3e-15 Score=175.76 Aligned_cols=150 Identities=17% Similarity=0.109 Sum_probs=115.3
Q ss_pred cCceEEeccCCCccCHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhc--CCcee----EEEEeecCC-
Q 001454 486 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIR--NHFSW----RVKFMDVGL- 558 (1075)
Q Consensus 486 ~s~~LWVGnL~~~vte~dL~~~F~~fG~Le~v~~~~~rgfAFVeF~~i~DAv~A~~~L~--G~~~~----RI~F~r~~~- 558 (1075)
|||.||||||+.+++|+||+++|++||+|.++.+.+.|+||||+|++.++|.+|++.|+ |..+. +|+|+...-
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~~~~~ 80 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPGKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYSTSQEI 80 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECCCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecCCccc
Confidence 68999999999999999999999999999999999999999999999999999999864 44443 777764321
Q ss_pred CCcccccceeccc--cceEEEccCCCchhHHHHHHhhhcccccCCceeecCCCCCcccccccCHHHHHHHHHHHhhccc
Q 001454 559 GTKGVINGVAVGS--CFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHRK 635 (1075)
Q Consensus 559 g~~g~~~g~~~~~--s~~lwVG~iss~~~keeLf~E~~k~~~kgp~~f~dlser~~LpVEF~s~edA~~A~~~lr~~r~ 635 (1075)
...+--.+-..++ ...|||++++..++.|+|...|..+|.+..+.+..-..+..++|||++.++|..|++.|+++..
T Consensus 81 ~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~~~~afVef~~~~~A~~A~~~Lng~~i 159 (481)
T TIGR01649 81 KRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNNVFQALVEFESVNSAQHAKAALNGADI 159 (481)
T ss_pred ccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCCceEEEEEECCHHHHHHHHHHhcCCcc
Confidence 1111000001112 3478999999999999999998887765555431111224699999999999999999999763
No 8
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.61 E-value=5.1e-15 Score=170.94 Aligned_cols=152 Identities=16% Similarity=0.092 Sum_probs=119.0
Q ss_pred cccCceEEeccCCC-ccCHHHHHHHhhccCCcceEEEec-cCceEEEEecCHHHHHHHHHhhcCCcee----EEEEeecC
Q 001454 484 FSASKQLWLGSFGP-EASEAHIRFQIDRFGPLEHFFFFP-IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDVG 557 (1075)
Q Consensus 484 ~~~s~~LWVGnL~~-~vte~dL~~~F~~fG~Le~v~~~~-~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~r~~ 557 (1075)
-.++++||||||+. .+++++|+.+|+.||.|.+|.+.. .||||||+|.+.+||..|++.|+|..+. +|.|++..
T Consensus 272 ~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~ 351 (481)
T TIGR01649 272 GGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNKKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQQ 351 (481)
T ss_pred CCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcccc
Confidence 45789999999998 699999999999999999999876 5799999999999999999999999775 67776432
Q ss_pred C-----------CC---ccccc----ce----------eccccceEEEccCCCchhHHHHHHhhhcccccCCceeecCCC
Q 001454 558 L-----------GT---KGVIN----GV----------AVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSC 609 (1075)
Q Consensus 558 ~-----------g~---~g~~~----g~----------~~~~s~~lwVG~iss~~~keeLf~E~~k~~~kgp~~f~dlse 609 (1075)
. |. ++..+ +. ...+++.|||+|++...++|+|..-|..++.+....+.-+..
T Consensus 352 ~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~ik~~~~ 431 (481)
T TIGR01649 352 NVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNIPLSVSEEDLKELFAENGVHKVKKFKFFPK 431 (481)
T ss_pred cccCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEEecCCCCCCHHHHHHHHHhcCCccceEEEEecC
Confidence 1 11 11100 00 012678999999999999999988887766533333322222
Q ss_pred ----CCcccccccCHHHHHHHHHHHhhccc
Q 001454 610 ----EGALLMEFRTPEEATTAMAHLRQHRK 635 (1075)
Q Consensus 610 ----r~~LpVEF~s~edA~~A~~~lr~~r~ 635 (1075)
++..+|||++.|+|..|+..|+++..
T Consensus 432 ~~~~~~~gfVeF~~~e~A~~Al~~ln~~~l 461 (481)
T TIGR01649 432 DNERSKMGLLEWESVEDAVEALIALNHHQL 461 (481)
T ss_pred CCCcceeEEEEcCCHHHHHHHHHHhcCCcc
Confidence 57899999999999999999998653
No 9
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.61 E-value=5.3e-15 Score=161.46 Aligned_cols=149 Identities=15% Similarity=0.191 Sum_probs=118.5
Q ss_pred CceEEeccCCCccCHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhcCCcee------EEEEe
Q 001454 487 SKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW------RVKFM 554 (1075)
Q Consensus 487 s~~LWVGnL~~~vte~dL~~~F~~fG~Le~v~~~~------~rgfAFVeF~~i~DAv~A~~~L~G~~~~------RI~F~ 554 (1075)
.++||||||+.++++++|+.+|++||.|..+.+.. .||||||+|.+.+||.+|++.|+|..+. +++|+
T Consensus 89 ~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~a 168 (352)
T TIGR01661 89 GANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKFA 168 (352)
T ss_pred cceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEEC
Confidence 46899999999999999999999999999888753 5899999999999999999999998652 67776
Q ss_pred ecCC--C----------------Cccccc---------------------------------------------------
Q 001454 555 DVGL--G----------------TKGVIN--------------------------------------------------- 565 (1075)
Q Consensus 555 r~~~--g----------------~~g~~~--------------------------------------------------- 565 (1075)
+... . .++..+
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (352)
T TIGR01661 169 NNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQRASPPA 248 (352)
T ss_pred CCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccccccccCCCcc
Confidence 4321 0 000000
Q ss_pred ------cee--------ccccceEEEccCCCchhHHHHHHhhhcccccCCceee----cCCCCCcccccccCHHHHHHHH
Q 001454 566 ------GVA--------VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT----DLSCEGALLMEFRTPEEATTAM 627 (1075)
Q Consensus 566 ------g~~--------~~~s~~lwVG~iss~~~keeLf~E~~k~~~kgp~~f~----dlser~~LpVEF~s~edA~~A~ 627 (1075)
+.. .+.++.||||+++..+++++|.+-|.+++.+..+.+. ....++.++|+|++.+||.+||
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai 328 (352)
T TIGR01661 249 TDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAI 328 (352)
T ss_pred ccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHH
Confidence 000 1234479999999999999999999998877666552 3467899999999999999999
Q ss_pred HHHhhccc
Q 001454 628 AHLRQHRK 635 (1075)
Q Consensus 628 ~~lr~~r~ 635 (1075)
+.|++...
T Consensus 329 ~~lnG~~~ 336 (352)
T TIGR01661 329 LSLNGYTL 336 (352)
T ss_pred HHhCCCEE
Confidence 99999664
No 10
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.58 E-value=9.1e-15 Score=165.67 Aligned_cols=148 Identities=17% Similarity=0.222 Sum_probs=114.9
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhcCCcee----EEEEe
Q 001454 485 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 554 (1075)
Q Consensus 485 ~~s~~LWVGnL~~~vte~dL~~~F~~fG~Le~v~~~~------~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~ 554 (1075)
...++||||||+.+++++||+++|++||+|.+|.+.. .||||||+|.+.+||.+|+. |+|..+. +|.+.
T Consensus 87 ~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~~ 165 (457)
T TIGR01622 87 RDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQSS 165 (457)
T ss_pred cCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEeec
Confidence 4578999999999999999999999999999999854 58999999999999999996 8998776 34433
Q ss_pred ecCCC--Cc--ccccceeccccceEEEccCCCchhHHHHHHhhhcccccCCceee-c---CCCCCcccccccCHHHHHHH
Q 001454 555 DVGLG--TK--GVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D---LSCEGALLMEFRTPEEATTA 626 (1075)
Q Consensus 555 r~~~g--~~--g~~~g~~~~~s~~lwVG~iss~~~keeLf~E~~k~~~kgp~~f~-d---lser~~LpVEF~s~edA~~A 626 (1075)
..... .+ ....| ....++.||||+++..+++++|...+..++.+..+.+. + ...++.++|||.+.++|..|
T Consensus 166 ~~~~~~~~~~~~~~~~-~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A 244 (457)
T TIGR01622 166 QAEKNRAAKAATHQPG-DIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEA 244 (457)
T ss_pred chhhhhhhhcccccCC-CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHH
Confidence 21100 00 00001 01237899999999999999999999887766555442 2 24578899999999999999
Q ss_pred HHHHhhcc
Q 001454 627 MAHLRQHR 634 (1075)
Q Consensus 627 ~~~lr~~r 634 (1075)
+..|++..
T Consensus 245 ~~~l~g~~ 252 (457)
T TIGR01622 245 LEVMNGFE 252 (457)
T ss_pred HHhcCCcE
Confidence 99998743
No 11
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.58 E-value=9.8e-15 Score=172.13 Aligned_cols=133 Identities=19% Similarity=0.260 Sum_probs=108.3
Q ss_pred CceEEeccCCCccCHHHHHHHhhccCCcceEEEe-----ccCceEEEEecCHHHHHHHHHhhcCCcee---EEEEeecCC
Q 001454 487 SKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF-----PIKGFALVEYINIIDAIRAREYIRNHFSW---RVKFMDVGL 558 (1075)
Q Consensus 487 s~~LWVGnL~~~vte~dL~~~F~~fG~Le~v~~~-----~~rgfAFVeF~~i~DAv~A~~~L~G~~~~---RI~F~r~~~ 558 (1075)
.++||||||+.+++|+||+++|++||+|.++++. .+||||||+|.+.+||.+|++.|+|..+. .+.+..
T Consensus 58 ~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~--- 134 (578)
T TIGR01648 58 GCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCI--- 134 (578)
T ss_pred CCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccccc---
Confidence 5899999999999999999999999999999985 38999999999999999999999998652 111111
Q ss_pred CCcccccceeccccceEEEccCCCchhHHHHHHhhhccccc--CCceee----cCCCCCcccccccCHHHHHHHHHHHhh
Q 001454 559 GTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYK--GPYMVT----DLSCEGALLMEFRTPEEATTAMAHLRQ 632 (1075)
Q Consensus 559 g~~g~~~g~~~~~s~~lwVG~iss~~~keeLf~E~~k~~~k--gp~~f~----dlser~~LpVEF~s~edA~~A~~~lr~ 632 (1075)
....+.||||+|+..+++|||+.|+.++... ..+.+. ....++.++|||++.++|..|++.|..
T Consensus 135 ----------S~~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~ 204 (578)
T TIGR01648 135 ----------SVDNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMP 204 (578)
T ss_pred ----------cccCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhc
Confidence 1257899999999999999999999986421 111111 124578999999999999999987754
No 12
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.56 E-value=2e-14 Score=164.82 Aligned_cols=151 Identities=19% Similarity=0.204 Sum_probs=117.7
Q ss_pred ccccCceEEeccCCCccCHHHHHHHhhcc------------CCcceEEEeccCceEEEEecCHHHHHHHHHhhcCCcee-
Q 001454 483 IFSASKQLWLGSFGPEASEAHIRFQIDRF------------GPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW- 549 (1075)
Q Consensus 483 v~~~s~~LWVGnL~~~vte~dL~~~F~~f------------G~Le~v~~~~~rgfAFVeF~~i~DAv~A~~~L~G~~~~- 549 (1075)
.-...++||||||+.++++++|+++|..| ++|.++++-..+|||||+|++.++|..|+ .|+|..+.
T Consensus 171 ~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~~~kg~afVeF~~~e~A~~Al-~l~g~~~~g 249 (509)
T TIGR01642 171 ATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNINKEKNFAFLEFRTVEEATFAM-ALDSIIYSN 249 (509)
T ss_pred CCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEECCCCCEEEEEeCCHHHHhhhh-cCCCeEeeC
Confidence 34568999999999999999999999974 57888999889999999999999999999 59998654
Q ss_pred -EEEEeecCCCC-----------cc---cccce--------eccccceEEEccCCCchhHHHHHHhhhcccccCCcee-e
Q 001454 550 -RVKFMDVGLGT-----------KG---VINGV--------AVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-T 605 (1075)
Q Consensus 550 -RI~F~r~~~g~-----------~g---~~~g~--------~~~~s~~lwVG~iss~~~keeLf~E~~k~~~kgp~~f-~ 605 (1075)
.|++.++..-. .. ...+. .....+.|||||++..++.++|..-|..++.+..+.+ .
T Consensus 250 ~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~ 329 (509)
T TIGR01642 250 VFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIK 329 (509)
T ss_pred ceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEe
Confidence 55555442100 00 00000 1124689999999999999999988888876555543 2
Q ss_pred c---CCCCCcccccccCHHHHHHHHHHHhhcc
Q 001454 606 D---LSCEGALLMEFRTPEEATTAMAHLRQHR 634 (1075)
Q Consensus 606 d---lser~~LpVEF~s~edA~~A~~~lr~~r 634 (1075)
+ ...++.+||||.+.++|..|+..|++..
T Consensus 330 ~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~ 361 (509)
T TIGR01642 330 DIATGLSKGYAFCEYKDPSVTDVAIAALNGKD 361 (509)
T ss_pred cCCCCCcCeEEEEEECCHHHHHHHHHHcCCCE
Confidence 2 4568999999999999999999998754
No 13
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.56 E-value=1.2e-14 Score=163.57 Aligned_cols=133 Identities=23% Similarity=0.365 Sum_probs=112.1
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhcCCceeEEEEeecCC
Q 001454 485 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSWRVKFMDVGL 558 (1075)
Q Consensus 485 ~~s~~LWVGnL~~~vte~dL~~~F~~fG~Le~v~~~~------~rgfAFVeF~~i~DAv~A~~~L~G~~~~RI~F~r~~~ 558 (1075)
.-.|.+|||.|+.|+.|+||.-+|++-|+|-.+++-. +||||||.|.+-++|..|++.|++..+.
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir--------- 151 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIR--------- 151 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCcccc---------
Confidence 5689999999999999999999999999999999732 7999999999999999999999988654
Q ss_pred CCcccccceecc-ccceEEEccCCCchhHHHHHHhhhccc--------ccCCceeecCCCCCcccccccCHHHHHHHHHH
Q 001454 559 GTKGVINGVAVG-SCFHVYVGNIPNQWAKDEILHESYKVV--------YKGPYMVTDLSCEGALLMEFRTPEEATTAMAH 629 (1075)
Q Consensus 559 g~~g~~~g~~~~-~s~~lwVG~iss~~~keeLf~E~~k~~--------~kgp~~f~dlser~~LpVEF~s~edA~~A~~~ 629 (1075)
.|..-||++. .+|.|+||+||..|.||||+.|+.++. ++.+.. ....|+.+||||++-.-|.-|.+.
T Consensus 152 --~GK~igvc~Svan~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~d--k~KNRGFaFveYe~H~~Aa~aRrK 227 (506)
T KOG0117|consen 152 --PGKLLGVCVSVANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDD--KTKNRGFAFVEYESHRAAAMARRK 227 (506)
T ss_pred --CCCEeEEEEeeecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccc--cccccceEEEEeecchhHHHHHhh
Confidence 2444556664 799999999999999999999999987 333332 256789999999998877766444
Q ss_pred H
Q 001454 630 L 630 (1075)
Q Consensus 630 l 630 (1075)
|
T Consensus 228 l 228 (506)
T KOG0117|consen 228 L 228 (506)
T ss_pred c
Confidence 3
No 14
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.54 E-value=5.2e-14 Score=161.36 Aligned_cols=151 Identities=17% Similarity=0.212 Sum_probs=117.2
Q ss_pred cccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhcCCcee----EEEE
Q 001454 484 FSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKF 553 (1075)
Q Consensus 484 ~~~s~~LWVGnL~~~vte~dL~~~F~~fG~Le~v~~~~------~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F 553 (1075)
....++||||||+..+++++|+++|+.||+|..+.+.. .+|||||+|.+.++|..|++.|+|..++ +|++
T Consensus 292 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~ 371 (509)
T TIGR01642 292 LDSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQR 371 (509)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 34578999999999999999999999999999998854 5899999999999999999999999886 6777
Q ss_pred eecCCCC------cc----------ccc---ceeccccceEEEccCCCch----------hHHHHHHhhhcccccCCcee
Q 001454 554 MDVGLGT------KG----------VIN---GVAVGSCFHVYVGNIPNQW----------AKDEILHESYKVVYKGPYMV 604 (1075)
Q Consensus 554 ~r~~~g~------~g----------~~~---g~~~~~s~~lwVG~iss~~----------~keeLf~E~~k~~~kgp~~f 604 (1075)
+..+... .| ... -+...+++.|||.++.... +.|+|..|+.++|.+..+.+
T Consensus 372 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i 451 (509)
T TIGR01642 372 ACVGANQATIDTSNGMAPVTLLAKALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVI 451 (509)
T ss_pred CccCCCCCCccccccccccccccccchhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEe
Confidence 6443110 00 000 0012368999999986532 35788999999887666554
Q ss_pred e-c------CCCCCcccccccCHHHHHHHHHHHhhcc
Q 001454 605 T-D------LSCEGALLMEFRTPEEATTAMAHLRQHR 634 (1075)
Q Consensus 605 ~-d------lser~~LpVEF~s~edA~~A~~~lr~~r 634 (1075)
. . ....+.+||+|++.++|..|+..|+++.
T Consensus 452 ~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~ 488 (509)
T TIGR01642 452 PRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRK 488 (509)
T ss_pred eccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCE
Confidence 2 1 2235789999999999999999999866
No 15
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.54 E-value=5e-14 Score=159.67 Aligned_cols=150 Identities=20% Similarity=0.286 Sum_probs=117.6
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEEEe------ccCceEEEEecCHHHHHHHHHhhcCCcee----EEEEe
Q 001454 485 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF------PIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 554 (1075)
Q Consensus 485 ~~s~~LWVGnL~~~vte~dL~~~F~~fG~Le~v~~~------~~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~ 554 (1075)
+.+++||||||+.+++|++|+++|++||.|..|.+. ..+|||||+|.+.++|..|++.|+|..+. +|.|+
T Consensus 184 p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a 263 (457)
T TIGR01622 184 PNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYA 263 (457)
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEc
Confidence 347999999999999999999999999999999987 35799999999999999999999998765 78884
Q ss_pred ecCC------------------C----------------------------C------------ccccc---------c-
Q 001454 555 DVGL------------------G----------------------------T------------KGVIN---------G- 566 (1075)
Q Consensus 555 r~~~------------------g----------------------------~------------~g~~~---------g- 566 (1075)
.-.. | + .|.++ +
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (457)
T TIGR01622 264 QDSTYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIALMQKLQRDGIIDPNIPSRYATGA 343 (457)
T ss_pred cCCCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhhhhccccccccccccccccccccc
Confidence 3110 0 0 00000 0
Q ss_pred ---------e----eccccceEEEccCCCchh----------HHHHHHhhhcccccCCceeecCCCCCcccccccCHHHH
Q 001454 567 ---------V----AVGSCFHVYVGNIPNQWA----------KDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEA 623 (1075)
Q Consensus 567 ---------~----~~~~s~~lwVG~iss~~~----------keeLf~E~~k~~~kgp~~f~dlser~~LpVEF~s~edA 623 (1075)
+ ...+++.|+|.++-...+ +|+|+.|+.++|.+..+.+..-...+.+||+|++.++|
T Consensus 344 ~~~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v~~v~v~~~~~~G~~fV~F~~~e~A 423 (457)
T TIGR01622 344 LAIMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKYGGVVHIYVDTKNSAGKIYLKFSSVDAA 423 (457)
T ss_pred cccccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEEEeCCCCceeEEEEECCHHHH
Confidence 0 002567888888844332 57899999998877777665556779999999999999
Q ss_pred HHHHHHHhhcc
Q 001454 624 TTAMAHLRQHR 634 (1075)
Q Consensus 624 ~~A~~~lr~~r 634 (1075)
..|++.|+++.
T Consensus 424 ~~A~~~lnGr~ 434 (457)
T TIGR01622 424 LAAFQALNGRY 434 (457)
T ss_pred HHHHHHhcCcc
Confidence 99999999976
No 16
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=99.53 E-value=1.7e-14 Score=169.36 Aligned_cols=85 Identities=19% Similarity=0.212 Sum_probs=67.4
Q ss_pred CCCCCCCc--ccccCCCcccccccccccccCCCCCcccccc-----------CCCCCCCccchhcHHHHHhhccccceEe
Q 001454 960 ISEPAEWP--AKLDMTKRTDFRHVKSTFTSTPPNKREVCRL-----------VPSSPGDHKGFQDFVSYLKQRECAGVIK 1026 (1075)
Q Consensus 960 isePs~WP--~~lD~TnRTDFd~VeslFa~tPP~kREVcrL-----------vP~s~~D~K~fqdFiifL~Q~~cagviK 1026 (1075)
|++...|- ++..+++..-|+.+..+|+..+..++|-.-. +...+.|.|..|++.||| |++|
T Consensus 639 ~s~~cFWvkv~Edk~en~dlfakL~~~Fatq~k~~k~~e~~eekkt~~kKk~kel~ilDsKtaQnLsIfl------gS~r 712 (1102)
T KOG1924|consen 639 LSENCFWVKVNEDKLENDDLFAKLALKFATQPKVKKEQEGGEEKKTGTKKKVKELRILDSKTAQNLSIFL------GSFR 712 (1102)
T ss_pred cCccceeeecchhhccchHHHHHHHHHhhccccccccccccccccchhhhhhhhheecchHHHHHHHHHH------hhcc
Confidence 44445675 4566777888888999999987766653322 244678999999999999 7889
Q ss_pred ecchhhhHHHHHhhcCCchhhccccc
Q 001454 1027 IPAVKSIWARLMFILPYSQDICSMLS 1052 (1075)
Q Consensus 1027 l~~v~s~~krlL~llPes~evcsmLs 1052 (1075)
+++ ++||.+|++|+|+.++.+||.
T Consensus 713 mpy--eeik~~ILevne~vLse~~iq 736 (1102)
T KOG1924|consen 713 MPY--EEIKNVILEVNEDVLSESMIQ 736 (1102)
T ss_pred CCH--HHHHHHHhhccHHHHHHHHHH
Confidence 999 999999999999999998775
No 17
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.48 E-value=2.4e-13 Score=160.56 Aligned_cols=143 Identities=17% Similarity=0.197 Sum_probs=113.1
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCC-cceEEEe-------ccCceEEEEecCHHHHHHHHHhhcCCc--ee----E
Q 001454 485 SASKQLWLGSFGPEASEAHIRFQIDRFGP-LEHFFFF-------PIKGFALVEYINIIDAIRAREYIRNHF--SW----R 550 (1075)
Q Consensus 485 ~~s~~LWVGnL~~~vte~dL~~~F~~fG~-Le~v~~~-------~~rgfAFVeF~~i~DAv~A~~~L~G~~--~~----R 550 (1075)
...++||||||+.+++++||.++|++|+. +.++.++ ..||||||+|++.+||..|++.|.... +| +
T Consensus 136 ~~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~ 215 (578)
T TIGR01648 136 VDNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIA 215 (578)
T ss_pred ccCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEE
Confidence 45799999999999999999999999974 4455554 258999999999999999999887543 33 6
Q ss_pred EEEeecCCCCcccccceeccccceEEEccCCCchhHHHHHHhhhcc--cccCCceeecCCCCCcccccccCHHHHHHHHH
Q 001454 551 VKFMDVGLGTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKV--VYKGPYMVTDLSCEGALLMEFRTPEEATTAMA 628 (1075)
Q Consensus 551 I~F~r~~~g~~g~~~g~~~~~s~~lwVG~iss~~~keeLf~E~~k~--~~kgp~~f~dlser~~LpVEF~s~edA~~A~~ 628 (1075)
|+++.+..... --.+..++.||||+++..+++|+|..+|..+ +.+..+.+. ++.+||||++.|||..||+
T Consensus 216 VdwA~p~~~~d----~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~----rgfAFVeF~s~e~A~kAi~ 287 (578)
T TIGR01648 216 VDWAEPEEEVD----EDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI----RDYAFVHFEDREDAVKAMD 287 (578)
T ss_pred EEeeccccccc----ccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee----cCeEEEEeCCHHHHHHHHH
Confidence 77776632211 1112346899999999999999999999988 655554432 5789999999999999999
Q ss_pred HHhhccc
Q 001454 629 HLRQHRK 635 (1075)
Q Consensus 629 ~lr~~r~ 635 (1075)
.|++...
T Consensus 288 ~lnG~~i 294 (578)
T TIGR01648 288 ELNGKEL 294 (578)
T ss_pred HhCCCEE
Confidence 9998553
No 18
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.47 E-value=1.7e-13 Score=147.10 Aligned_cols=147 Identities=20% Similarity=0.292 Sum_probs=121.5
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhcCCcee----EEEEe
Q 001454 485 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 554 (1075)
Q Consensus 485 ~~s~~LWVGnL~~~vte~dL~~~F~~fG~Le~v~~~~------~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~ 554 (1075)
..+=+++||.|++.++-++|++.|.+||+|.+-++.+ +|||+||-|-+-+||+.|+..|+|+.++ |-..+
T Consensus 60 ~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWA 139 (321)
T KOG0148|consen 60 NQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWA 139 (321)
T ss_pred ccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccc
Confidence 3366899999999999999999999999999988854 8999999999999999999999999887 55566
Q ss_pred ecCCCCcccccceec----------cccceEEEccCCCchhHHHHHHhhhcccccCCceeecCCCCCcccccccCHHHHH
Q 001454 555 DVGLGTKGVINGVAV----------GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEAT 624 (1075)
Q Consensus 555 r~~~g~~g~~~g~~~----------~~s~~lwVG~iss~~~keeLf~E~~k~~~kgp~~f~dlser~~LpVEF~s~edA~ 624 (1075)
-+.. +.+||-.- ..++.+|||+|.+...+|+|..-+..++-+-. +.-|-+++++||-|++-|-|+
T Consensus 140 TRKp---~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~E--VRvFk~qGYaFVrF~tkEaAa 214 (321)
T KOG0148|consen 140 TRKP---SEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQE--VRVFKDQGYAFVRFETKEAAA 214 (321)
T ss_pred ccCc---cccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceE--EEEecccceEEEEecchhhHH
Confidence 4433 22344332 26899999999998888888877765544444 446788999999999999999
Q ss_pred HHHHHHhhcccC
Q 001454 625 TAMAHLRQHRKS 636 (1075)
Q Consensus 625 ~A~~~lr~~r~e 636 (1075)
.|+.+|++...+
T Consensus 215 hAIv~mNntei~ 226 (321)
T KOG0148|consen 215 HAIVQMNNTEIG 226 (321)
T ss_pred HHHHHhcCceeC
Confidence 999999998753
No 19
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.38 E-value=1.6e-12 Score=133.78 Aligned_cols=144 Identities=20% Similarity=0.233 Sum_probs=112.9
Q ss_pred cCceEEeccCCCccCHHHHHHHhhccCCcceEEEec---cCceEEEEecCHHHHHHHHHhhcCCcee----EEEEeecCC
Q 001454 486 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP---IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDVGL 558 (1075)
Q Consensus 486 ~s~~LWVGnL~~~vte~dL~~~F~~fG~Le~v~~~~---~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~r~~~ 558 (1075)
.+|.+|||||++++.|.||+.+|-+||+|..|-+.- +..||||+|++.+||++|+..-+|-..- ||||.+.+-
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprggr 84 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRGGR 84 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEeccCCC
Confidence 478999999999999999999999999999988752 6789999999999999999999987652 999997651
Q ss_pred -----------CCccccc------ceeccccceEEEccCCCchhHHHHHHhhhcccccCCceeecCCCCCcccccccCHH
Q 001454 559 -----------GTKGVIN------GVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPE 621 (1075)
Q Consensus 559 -----------g~~g~~~------g~~~~~s~~lwVG~iss~~~keeLf~E~~k~~~kgp~~f~dlser~~LpVEF~s~e 621 (1075)
|.+|--+ +..-.+-..+.|-+.+++-+-.+|..-|+++ +.+-|.+..-.+.=.|||..-|
T Consensus 85 ~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmRea---GdvCfadv~rDg~GvV~~~r~e 161 (241)
T KOG0105|consen 85 SSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREA---GDVCFADVQRDGVGVVEYLRKE 161 (241)
T ss_pred cccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhh---CCeeeeeeecccceeeeeeehh
Confidence 1111100 0011145678899999998889999999964 4555666666678889999999
Q ss_pred HHHHHHHHHhh
Q 001454 622 EATTAMAHLRQ 632 (1075)
Q Consensus 622 dA~~A~~~lr~ 632 (1075)
|-.-|++.|..
T Consensus 162 DMkYAvr~ld~ 172 (241)
T KOG0105|consen 162 DMKYAVRKLDD 172 (241)
T ss_pred hHHHHHHhhcc
Confidence 98888776654
No 20
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.31 E-value=3.6e-12 Score=143.39 Aligned_cols=142 Identities=20% Similarity=0.291 Sum_probs=123.3
Q ss_pred CceEEeccCCCccCHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhcCCcee-------EEEE
Q 001454 487 SKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW-------RVKF 553 (1075)
Q Consensus 487 s~~LWVGnL~~~vte~dL~~~F~~fG~Le~v~~~~------~rgfAFVeF~~i~DAv~A~~~L~G~~~~-------RI~F 553 (1075)
.=+||||-|+..++|.||+++|++||.+..|.+.+ .+||+||-|...+||.+|+.+|...+.. .|+|
T Consensus 34 ~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk~ 113 (510)
T KOG0144|consen 34 AVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVKY 113 (510)
T ss_pred hhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeecc
Confidence 34799999999999999999999999999998854 7899999999999999999999988654 9999
Q ss_pred eecCCCCcccccceeccccceEEEccCCCchhHHHHHHhhhcccccCCcee-e--cCCCCCcccccccCHHHHHHHHHHH
Q 001454 554 MDVGLGTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-T--DLSCEGALLMEFRTPEEATTAMAHL 630 (1075)
Q Consensus 554 ~r~~~g~~g~~~g~~~~~s~~lwVG~iss~~~keeLf~E~~k~~~kgp~~f-~--dlser~~LpVEF~s~edA~~A~~~l 630 (1075)
+|. -|- .+...+.||||-++.+.+++|+..=+-+|+.++++.+ . +..+|+++||-|.+-|-|.+|++.|
T Consensus 114 Ad~---E~e-----r~~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ 185 (510)
T KOG0144|consen 114 ADG---ERE-----RIVEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKAL 185 (510)
T ss_pred cch---hhh-----ccccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhh
Confidence 987 121 0245788999999999999999888888888887755 3 4788999999999999999999999
Q ss_pred hhcccC
Q 001454 631 RQHRKS 636 (1075)
Q Consensus 631 r~~r~e 636 (1075)
++..+=
T Consensus 186 ng~~tm 191 (510)
T KOG0144|consen 186 NGTQTM 191 (510)
T ss_pred ccceee
Confidence 997763
No 21
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.21 E-value=4.3e-11 Score=119.23 Aligned_cols=72 Identities=19% Similarity=0.216 Sum_probs=64.4
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhcCCcee----EEEEe
Q 001454 485 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 554 (1075)
Q Consensus 485 ~~s~~LWVGnL~~~vte~dL~~~F~~fG~Le~v~~~~------~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~ 554 (1075)
..+++||||||+.+++|+||+++|++||+|.++.+.. .||||||+|.+.+||.+|++.|+|+.+. +|+++
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a 111 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeC
Confidence 4578999999999999999999999999999998853 5899999999999999999999999765 67776
Q ss_pred ec
Q 001454 555 DV 556 (1075)
Q Consensus 555 r~ 556 (1075)
..
T Consensus 112 ~~ 113 (144)
T PLN03134 112 ND 113 (144)
T ss_pred Cc
Confidence 44
No 22
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.21 E-value=2.2e-09 Score=127.59 Aligned_cols=63 Identities=22% Similarity=0.475 Sum_probs=59.6
Q ss_pred cCceEEeccCCCccCHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhcCCce
Q 001454 486 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFS 548 (1075)
Q Consensus 486 ~s~~LWVGnL~~~vte~dL~~~F~~fG~Le~v~~~~~rgfAFVeF~~i~DAv~A~~~L~G~~~ 548 (1075)
.|++||||.|.-+++|.||..+|+.||.|++|.+-.+|++|||--.+..||.+|+..|..-.+
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~R~cAfI~M~~RqdA~kalqkl~n~kv 482 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPPRGCAFIKMVRRQDAEKALQKLSNVKV 482 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEeeccCCceeEEEEeehhHHHHHHHHHhcccc
Confidence 489999999999999999999999999999999999999999999999999999999995443
No 23
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.20 E-value=3.1e-11 Score=101.63 Aligned_cols=60 Identities=28% Similarity=0.450 Sum_probs=57.0
Q ss_pred EEeccCCCccCHHHHHHHhhccCCcceEEEec-----cCceEEEEecCHHHHHHHHHhhcCCcee
Q 001454 490 LWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP-----IKGFALVEYINIIDAIRAREYIRNHFSW 549 (1075)
Q Consensus 490 LWVGnL~~~vte~dL~~~F~~fG~Le~v~~~~-----~rgfAFVeF~~i~DAv~A~~~L~G~~~~ 549 (1075)
||||||+.+++++||++.|++||+|..+.+.+ .++||||+|.+.+||..|++.|+|..+.
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~ 65 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKIN 65 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEET
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEEC
Confidence 79999999999999999999999999999876 5999999999999999999999998765
No 24
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.19 E-value=6.7e-11 Score=133.83 Aligned_cols=205 Identities=17% Similarity=0.217 Sum_probs=150.2
Q ss_pred CCCCCCCCCCC--CCCCCCccccc--cCcCCCCCC---CCCCCCCcccccccC---CCCCCCCCCCCCCCcceeeeecCC
Q 001454 408 MPRDLPNPQML--SPAARTPLHFR--NNSFEGRNH---FPGRSSSEGASNALL---SPNHHLPVPYASTTSQIVWYFDED 477 (1075)
Q Consensus 408 ~~~~~~~~~~~--~~~~~~~~~~~--~~~~~~~~~---~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~ 477 (1075)
+|||+-.-.+. +-..-.-.|+| -|.|+|.|. |+--.+-+-+++.+- |-++. -|-
T Consensus 91 IPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir----------------~GK 154 (506)
T KOG0117|consen 91 IPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIR----------------PGK 154 (506)
T ss_pred CCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCcccc----------------CCC
Confidence 68888766553 23333445555 467888775 554443333444432 21122 122
Q ss_pred cccccccccCceEEeccCCCccCHHHHHHHhhccCC-cceEEEe-------ccCceEEEEecCHHHHHHHHHhh-cCC-c
Q 001454 478 PAAMDIFSASKQLWLGSFGPEASEAHIRFQIDRFGP-LEHFFFF-------PIKGFALVEYINIIDAIRAREYI-RNH-F 547 (1075)
Q Consensus 478 ~~a~dv~~~s~~LWVGnL~~~vte~dL~~~F~~fG~-Le~v~~~-------~~rgfAFVeF~~i~DAv~A~~~L-~G~-~ 547 (1075)
+.-.-|--+.|.||||||+-+-+++||.++|.+-++ +.+|.++ +.||||||||+|-+-|..|++-| +|+ .
T Consensus 155 ~igvc~Svan~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~k 234 (506)
T KOG0117|consen 155 LLGVCVSVANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIK 234 (506)
T ss_pred EeEEEEeeecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCcee
Confidence 223334457899999999999999999999999998 6688886 48999999999999999998754 666 3
Q ss_pred ee----EEEEeecCCCCcccccceeccccceEEEccCCCchhHHHHHHhhhcccccCCceeecCCCCCcccccccCHHHH
Q 001454 548 SW----RVKFMDVGLGTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEA 623 (1075)
Q Consensus 548 ~~----RI~F~r~~~g~~g~~~g~~~~~s~~lwVG~iss~~~keeLf~E~~k~~~kgp~~f~dlser~~LpVEF~s~edA 623 (1075)
+| -|+.+++...-. .-.+.-.|.|||=|+.-.++.|.|..+|..++.++.+.. + |+++||-|.+-+||
T Consensus 235 lwgn~~tVdWAep~~e~d----ed~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk--~--rDYaFVHf~eR~da 306 (506)
T KOG0117|consen 235 LWGNAITVDWAEPEEEPD----EDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKK--P--RDYAFVHFAEREDA 306 (506)
T ss_pred ecCCcceeeccCcccCCC----hhhhhheeeeeeeccchhhhHHHHHHHHHhccceEEeec--c--cceeEEeecchHHH
Confidence 55 899998853211 112335899999999999999999999999887776643 3 78999999999999
Q ss_pred HHHHHHHhhcccC
Q 001454 624 TTAMAHLRQHRKS 636 (1075)
Q Consensus 624 ~~A~~~lr~~r~e 636 (1075)
..||+.++++-.+
T Consensus 307 vkAm~~~ngkeld 319 (506)
T KOG0117|consen 307 VKAMKETNGKELD 319 (506)
T ss_pred HHHHHHhcCceec
Confidence 9999999997764
No 25
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.19 E-value=5.9e-11 Score=127.21 Aligned_cols=140 Identities=16% Similarity=0.227 Sum_probs=112.6
Q ss_pred CceEEeccCCCccCHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhcCCcee----EEEEeec
Q 001454 487 SKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDV 556 (1075)
Q Consensus 487 s~~LWVGnL~~~vte~dL~~~F~~fG~Le~v~~~~------~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~r~ 556 (1075)
--+|.|-+|+.+.|++||+.+|+..|+||+.+..| +-||.||+|.+..||++|+..|+|-++- +|-|+||
T Consensus 41 kTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyARP 120 (360)
T KOG0145|consen 41 KTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYARP 120 (360)
T ss_pred cceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEeccC
Confidence 35899999999999999999999999999999876 4589999999999999999999998774 8999999
Q ss_pred CCCCcccccceeccccceEEEccCCCch---hHHHHHHhhhcccccCCc-eeecCCCCCcccccccCHHHHHHHHHHHhh
Q 001454 557 GLGTKGVINGVAVGSCFHVYVGNIPNQW---AKDEILHESYKVVYKGPY-MVTDLSCEGALLMEFRTPEEATTAMAHLRQ 632 (1075)
Q Consensus 557 ~~g~~g~~~g~~~~~s~~lwVG~iss~~---~keeLf~E~~k~~~kgp~-~f~dlser~~LpVEF~s~edA~~A~~~lr~ 632 (1075)
- -..|. --+|||.++|... .-|+||.-+...+..... .-...-+|+.-||-|++-+||..|++.|++
T Consensus 121 S---s~~Ik------~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG 191 (360)
T KOG0145|consen 121 S---SDSIK------DANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNG 191 (360)
T ss_pred C---hhhhc------ccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccC
Confidence 3 22222 3579999999864 455566666554422211 112256789999999999999999999999
Q ss_pred ccc
Q 001454 633 HRK 635 (1075)
Q Consensus 633 ~r~ 635 (1075)
+..
T Consensus 192 ~~P 194 (360)
T KOG0145|consen 192 QKP 194 (360)
T ss_pred CCC
Confidence 775
No 26
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=98.98 E-value=1.1e-09 Score=93.95 Aligned_cols=60 Identities=30% Similarity=0.496 Sum_probs=54.1
Q ss_pred EEeccCCCccCHHHHHHHhhccCCcceEEEecc-----CceEEEEecCHHHHHHHHHhhcCCcee
Q 001454 490 LWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPI-----KGFALVEYINIIDAIRAREYIRNHFSW 549 (1075)
Q Consensus 490 LWVGnL~~~vte~dL~~~F~~fG~Le~v~~~~~-----rgfAFVeF~~i~DAv~A~~~L~G~~~~ 549 (1075)
|+|+||+++++++||++.|++||+|+.|.+... +++|||+|.+.+||.+|++.++|..+.
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~ 65 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEID 65 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEET
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEEC
Confidence 799999999999999999999999999999875 799999999999999999999977654
No 27
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.97 E-value=6.8e-10 Score=123.18 Aligned_cols=148 Identities=21% Similarity=0.231 Sum_probs=119.5
Q ss_pred CceEEeccCCCccCHHHHHHHhhccCCcceEEEe------ccCceEEEEecCHHHHHHHHHhhcCCcee--EEEEeecCC
Q 001454 487 SKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF------PIKGFALVEYINIIDAIRAREYIRNHFSW--RVKFMDVGL 558 (1075)
Q Consensus 487 s~~LWVGnL~~~vte~dL~~~F~~fG~Le~v~~~------~~rgfAFVeF~~i~DAv~A~~~L~G~~~~--RI~F~r~~~ 558 (1075)
-|.+|||+|+-...|+-|+..|..||||.++-+- .-+|||||||+=++-|--|.+-|+|.-++ -|++.|+.-
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsN 192 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSN 192 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCC
Confidence 5889999999999999999999999999999874 26899999999999999999999999887 588888842
Q ss_pred -C-Cccccccee--ccccceEEEccCCCchhHHHHHHhhhcccccCCcee----ecCCCCCcccccccCHHHHHHHHHHH
Q 001454 559 -G-TKGVINGVA--VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV----TDLSCEGALLMEFRTPEEATTAMAHL 630 (1075)
Q Consensus 559 -g-~~g~~~g~~--~~~s~~lwVG~iss~~~keeLf~E~~k~~~kgp~~f----~dlser~~LpVEF~s~edA~~A~~~l 630 (1075)
+ ++..|.-|. ++.-+.|||..|.+..++++|.+=|.+|+.+--+.. +...-+++=||||.+..--..|+..|
T Consensus 193 mpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasM 272 (544)
T KOG0124|consen 193 MPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASM 272 (544)
T ss_pred CcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhc
Confidence 1 222222222 246789999999999999999999999985543322 34566889999998877666777777
Q ss_pred hhcc
Q 001454 631 RQHR 634 (1075)
Q Consensus 631 r~~r 634 (1075)
+-.+
T Consensus 273 NlFD 276 (544)
T KOG0124|consen 273 NLFD 276 (544)
T ss_pred chhh
Confidence 7655
No 28
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.91 E-value=1.6e-09 Score=114.97 Aligned_cols=142 Identities=18% Similarity=0.207 Sum_probs=108.6
Q ss_pred ceEEeccCCCccCHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhcCCcee----EEEEeecCCCCccc
Q 001454 488 KQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDVGLGTKGV 563 (1075)
Q Consensus 488 ~~LWVGnL~~~vte~dL~~~F~~fG~Le~v~~~~~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~r~~~g~~g~ 563 (1075)
..+|||+|+..+.+.||+++|..||.|.+|.+.. ||+||+|.|..||.+|+..|+|+.++ .+++++..-|.+|.
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~--gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~~~~g~ 79 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKN--GFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKRRGRGR 79 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeec--ccceeccCchhhhhcccchhcCceecceeeeeecccccccccCC
Confidence 4689999999999999999999999999999876 88899999999999999999999888 46777653222221
Q ss_pred -ccc----------eeccccceEEEccCCCchhHHHHHHhhhcccccCCceeecCCCCCcccccccCHHHHHHHHHHHhh
Q 001454 564 -ING----------VAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQ 632 (1075)
Q Consensus 564 -~~g----------~~~~~s~~lwVG~iss~~~keeLf~E~~k~~~kgp~~f~dlser~~LpVEF~s~edA~~A~~~lr~ 632 (1075)
++| +.....+.|.|=+++.-..--+|..=|..++.. +.. +. ..+..++||.+.+||..|+.-|++
T Consensus 80 ~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~-~~~--~~-~~~~~~v~Fs~~~da~ra~~~l~~ 155 (216)
T KOG0106|consen 80 PRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEV-TYV--DA-RRNFAFVEFSEQEDAKRALEKLDG 155 (216)
T ss_pred CCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCC-chh--hh-hccccceeehhhhhhhhcchhccc
Confidence 221 222356777777777665555555555554444 222 22 679999999999999999999888
Q ss_pred ccc
Q 001454 633 HRK 635 (1075)
Q Consensus 633 ~r~ 635 (1075)
...
T Consensus 156 ~~~ 158 (216)
T KOG0106|consen 156 KKL 158 (216)
T ss_pred hhh
Confidence 664
No 29
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=98.91 E-value=5.3e-09 Score=108.09 Aligned_cols=143 Identities=14% Similarity=0.199 Sum_probs=113.4
Q ss_pred CceEEeccCCCccCHHHHHHHhhccCCcceEEEe------ccCceEEEEecCHHHHHHHHHhhcCCcee--EEEEeecCC
Q 001454 487 SKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF------PIKGFALVEYINIIDAIRAREYIRNHFSW--RVKFMDVGL 558 (1075)
Q Consensus 487 s~~LWVGnL~~~vte~dL~~~F~~fG~Le~v~~~------~~rgfAFVeF~~i~DAv~A~~~L~G~~~~--RI~F~r~~~ 558 (1075)
..+||||||..-++|+-|-++|-.-||+-++.+= ..+|||||||++.+||.=|++.|++-++. +|+|.....
T Consensus 9 d~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas~ 88 (203)
T KOG0131|consen 9 DATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKASA 88 (203)
T ss_pred CceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEeccc
Confidence 3589999999999999999999999999999872 27999999999999999999999977776 899987742
Q ss_pred CCcccccceeccccceEEEccCCCchhHHHHHHhhhcccc--cCCceee--c-CCCCCcccccccCHHHHHHHHHHHhhc
Q 001454 559 GTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVY--KGPYMVT--D-LSCEGALLMEFRTPEEATTAMAHLRQH 633 (1075)
Q Consensus 559 g~~g~~~g~~~~~s~~lwVG~iss~~~keeLf~E~~k~~~--kgp~~f~--d-lser~~LpVEF~s~edA~~A~~~lr~~ 633 (1075)
+++ ..--.-+|+||+.-+.+.+..|-+=+.+++. ..|-.+. + ...+...++=|++.|.+.+|+..|+++
T Consensus 89 ~~~------nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq 162 (203)
T KOG0131|consen 89 HQK------NLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQ 162 (203)
T ss_pred ccc------cccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccc
Confidence 222 1223378999999997666666666666662 2222221 2 466779999999999999999999997
Q ss_pred cc
Q 001454 634 RK 635 (1075)
Q Consensus 634 r~ 635 (1075)
-.
T Consensus 163 ~l 164 (203)
T KOG0131|consen 163 YL 164 (203)
T ss_pred hh
Confidence 64
No 30
>smart00362 RRM_2 RNA recognition motif.
Probab=98.90 E-value=5.8e-09 Score=85.67 Aligned_cols=61 Identities=28% Similarity=0.436 Sum_probs=56.5
Q ss_pred eEEeccCCCccCHHHHHHHhhccCCcceEEEeccC----ceEEEEecCHHHHHHHHHhhcCCcee
Q 001454 489 QLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIK----GFALVEYINIIDAIRAREYIRNHFSW 549 (1075)
Q Consensus 489 ~LWVGnL~~~vte~dL~~~F~~fG~Le~v~~~~~r----gfAFVeF~~i~DAv~A~~~L~G~~~~ 549 (1075)
+|||+||+.+++++||++.|.+||++..+.+.+.+ |+|||+|.+.++|.+|++.|+|..+.
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~ 65 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLG 65 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEEC
Confidence 48999999999999999999999999999988755 99999999999999999999987653
No 31
>PLN03120 nucleic acid binding protein; Provisional
Probab=98.89 E-value=3.6e-09 Score=114.84 Aligned_cols=123 Identities=9% Similarity=-0.013 Sum_probs=84.7
Q ss_pred CceEEeccCCCccCHHHHHHHhhccCCcceEEEec---cCceEEEEecCHHHHHHHHHhhcCCcee----EEEEeecCCC
Q 001454 487 SKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP---IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDVGLG 559 (1075)
Q Consensus 487 s~~LWVGnL~~~vte~dL~~~F~~fG~Le~v~~~~---~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~r~~~g 559 (1075)
.++||||||+.+++|+||++.|+.||+|++|++.+ .+|||||+|++.++|..|+. |+|..++ +|..++..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~~-- 80 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAEDY-- 80 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccCC--
Confidence 68999999999999999999999999999999975 47999999999999999995 9999887 55555421
Q ss_pred CcccccceeccccceEEEccCCCc-hhHHHHHHhhhccccc-C--Cc-eeecCCCCCccc
Q 001454 560 TKGVINGVAVGSCFHVYVGNIPNQ-WAKDEILHESYKVVYK-G--PY-MVTDLSCEGALL 614 (1075)
Q Consensus 560 ~~g~~~g~~~~~s~~lwVG~iss~-~~keeLf~E~~k~~~k-g--p~-~f~dlser~~Lp 614 (1075)
.. ..+...-....-.+++.... ...++++.||.+-|+. + .+ +-+.|.++|.+-
T Consensus 81 ~~--p~~~~~~~~~~~~~~~~~~~~~~a~~vva~mLAkGy~l~~dA~~kAk~fDekH~~s 138 (260)
T PLN03120 81 QL--PPEALAPLSSNSPASGAESAVKKAEDVVSSMLAKGFILGKDAVNKAKAFDEKHQLT 138 (260)
T ss_pred CC--CcccccccccccCCCCccchhhHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhchH
Confidence 00 00000000000122222222 2357999999987732 1 12 235677888776
No 32
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.85 E-value=1.3e-08 Score=115.53 Aligned_cols=132 Identities=18% Similarity=0.235 Sum_probs=107.4
Q ss_pred ceEEeccCCCccCHHHHHHHhhccCCcceEEEec---cCceEEEEecCHHHHHHHHHhhcCCcee--EEEEeecCCCCcc
Q 001454 488 KQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP---IKGFALVEYINIIDAIRAREYIRNHFSW--RVKFMDVGLGTKG 562 (1075)
Q Consensus 488 ~~LWVGnL~~~vte~dL~~~F~~fG~Le~v~~~~---~rgfAFVeF~~i~DAv~A~~~L~G~~~~--RI~F~r~~~g~~g 562 (1075)
..|||| ++|||++|.+.|+++|++.++++-+ +-|||||+|.+.+||.+|++.|+...+. .||-|.++--..
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~tslgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd~~- 77 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDATSLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRDPS- 77 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecCCccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccCCc-
Confidence 469999 9999999999999999999999865 6799999999999999999999998775 666665521111
Q ss_pred cccceeccccceEEEccCCCchhHHHHHHhhhcccccCCcee--ecCCCCCcccccccCHHHHHHHHHHHhhccc
Q 001454 563 VINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV--TDLSCEGALLMEFRTPEEATTAMAHLRQHRK 635 (1075)
Q Consensus 563 ~~~g~~~~~s~~lwVG~iss~~~keeLf~E~~k~~~kgp~~f--~dlser~~LpVEF~s~edA~~A~~~lr~~r~ 635 (1075)
.+||=+.+.+.+.+.|..=+..+|.+-.+.+ ..-..+++ +|||++.++|..|+..|++...
T Consensus 78 -----------~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll 140 (369)
T KOG0123|consen 78 -----------LVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGMLL 140 (369)
T ss_pred -----------eeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCccc
Confidence 1999999999888877776666665554433 12227888 9999999999999999999653
No 33
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.84 E-value=4.2e-09 Score=114.74 Aligned_cols=131 Identities=18% Similarity=0.209 Sum_probs=107.2
Q ss_pred eEEeccCCCccCHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhcCCcee--EEEEeecCCCCcccccc
Q 001454 489 QLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW--RVKFMDVGLGTKGVING 566 (1075)
Q Consensus 489 ~LWVGnL~~~vte~dL~~~F~~fG~Le~v~~~~~rgfAFVeF~~i~DAv~A~~~L~G~~~~--RI~F~r~~~g~~g~~~g 566 (1075)
+|+||||+..+++.+|+.+|++||++-.--+ .|+|+||.-++-.-|++|++.|.|-++- -|.+--+. .|
T Consensus 4 KLFIGNLp~~~~~~elr~lFe~ygkVlECDI--vKNYgFVHiEdktaaedairNLhgYtLhg~nInVeaSk--sK----- 74 (346)
T KOG0109|consen 4 KLFIGNLPREATEQELRSLFEQYGKVLECDI--VKNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASK--SK----- 74 (346)
T ss_pred chhccCCCcccchHHHHHHHHhhCceEeeee--ecccceEEeecccccHHHHhhcccceecceEEEEEecc--cc-----
Confidence 7999999999999999999999999876655 4699999999999999999999998875 34433322 22
Q ss_pred eeccccceEEEccCCCchhHHHHHHhhhcccccCCceeecCCCCCcccccccCHHHHHHHHHHHhhcc
Q 001454 567 VAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHR 634 (1075)
Q Consensus 567 ~~~~~s~~lwVG~iss~~~keeLf~E~~k~~~kgp~~f~dlser~~LpVEF~s~edA~~A~~~lr~~r 634 (1075)
.+.+-.|.||||+..-.-+|+..-+.+.+-.-... ..+++.+|-|+-.|||..|.+.|+++-
T Consensus 75 --sk~stkl~vgNis~tctn~ElRa~fe~ygpviecd----ivkdy~fvh~d~~eda~~air~l~~~~ 136 (346)
T KOG0109|consen 75 --SKASTKLHVGNISPTCTNQELRAKFEKYGPVIECD----IVKDYAFVHFDRAEDAVEAIRGLDNTE 136 (346)
T ss_pred --CCCccccccCCCCccccCHHHhhhhcccCCceeee----eecceeEEEEeeccchHHHHhcccccc
Confidence 34788999999999999999988887654433333 257999999999999999998887743
No 34
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=98.83 E-value=7.7e-09 Score=116.43 Aligned_cols=72 Identities=13% Similarity=0.240 Sum_probs=63.6
Q ss_pred cCceEEeccCCCccCHHHHHHHhhccCCcceEEEecc------CceEEEEecCHHHHHHHHHhhcCCce------eEEEE
Q 001454 486 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPI------KGFALVEYINIIDAIRAREYIRNHFS------WRVKF 553 (1075)
Q Consensus 486 ~s~~LWVGnL~~~vte~dL~~~F~~fG~Le~v~~~~~------rgfAFVeF~~i~DAv~A~~~L~G~~~------~RI~F 553 (1075)
...+|||+||+.+++|+||+++|++||.|+.+.+.+. ||||||+|.+.+||++|++.|+|..+ .+|++
T Consensus 192 ~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~ 271 (346)
T TIGR01659 192 KDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRL 271 (346)
T ss_pred ccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEE
Confidence 3568999999999999999999999999999998753 58999999999999999999999854 37787
Q ss_pred eecC
Q 001454 554 MDVG 557 (1075)
Q Consensus 554 ~r~~ 557 (1075)
++..
T Consensus 272 a~~~ 275 (346)
T TIGR01659 272 AEEH 275 (346)
T ss_pred CCcc
Confidence 7653
No 35
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=98.78 E-value=6.4e-08 Score=96.77 Aligned_cols=114 Identities=23% Similarity=0.281 Sum_probs=89.5
Q ss_pred CceEEeccCCCccCHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhcCCcee----EEEEee-
Q 001454 487 SKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMD- 555 (1075)
Q Consensus 487 s~~LWVGnL~~~vte~dL~~~F~~fG~Le~v~~~~------~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~r- 555 (1075)
.+.||||||+.++++++|.++|.+||++..+.+.. .||||||+|.+.++|..|++.|+|..+. +|+...
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 79999999999999999999999999998888743 6699999999999999999999988665 555532
Q ss_pred -cCCCCcccc-----------ccee--ccccceEEEccCCCchhHHHHHHhhhcccccC
Q 001454 556 -VGLGTKGVI-----------NGVA--VGSCFHVYVGNIPNQWAKDEILHESYKVVYKG 600 (1075)
Q Consensus 556 -~~~g~~g~~-----------~g~~--~~~s~~lwVG~iss~~~keeLf~E~~k~~~kg 600 (1075)
.+....... .+.. ......+++++....+.++++...+...+...
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (306)
T COG0724 195 ASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIV 253 (306)
T ss_pred ccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhccccccce
Confidence 211111110 0000 12688999999999999999999998877553
No 36
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=98.75 E-value=1.8e-08 Score=120.43 Aligned_cols=64 Identities=20% Similarity=0.305 Sum_probs=59.5
Q ss_pred cCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhcCCcee
Q 001454 486 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW 549 (1075)
Q Consensus 486 ~s~~LWVGnL~~~vte~dL~~~F~~fG~Le~v~~~~------~rgfAFVeF~~i~DAv~A~~~L~G~~~~ 549 (1075)
..++||||||+++++++||+++|++||+|.++.+.+ .||||||+|++.++|.+|++.|+|..+.
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elg 272 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLG 272 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeC
Confidence 357899999999999999999999999999999864 5899999999999999999999999776
No 37
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=98.75 E-value=2.2e-08 Score=107.28 Aligned_cols=72 Identities=21% Similarity=0.311 Sum_probs=65.4
Q ss_pred cCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhcCCc----eeEEEEee
Q 001454 486 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHF----SWRVKFMD 555 (1075)
Q Consensus 486 ~s~~LWVGnL~~~vte~dL~~~F~~fG~Le~v~~~~------~rgfAFVeF~~i~DAv~A~~~L~G~~----~~RI~F~r 555 (1075)
-++.|=|-||+.+++|.||+++|.+||+|..+.+++ .||||||.|.+.+||.+|++.|+|.- +.|||+++
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwsk 267 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSK 267 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecC
Confidence 355699999999999999999999999999999975 79999999999999999999999983 33999998
Q ss_pred cC
Q 001454 556 VG 557 (1075)
Q Consensus 556 ~~ 557 (1075)
|.
T Consensus 268 P~ 269 (270)
T KOG0122|consen 268 PS 269 (270)
T ss_pred CC
Confidence 73
No 38
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=98.70 E-value=2.8e-08 Score=108.76 Aligned_cols=77 Identities=23% Similarity=0.431 Sum_probs=72.2
Q ss_pred eeeecCCcccccccccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhc
Q 001454 471 VWYFDEDPAAMDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIR 544 (1075)
Q Consensus 471 ~~~~~g~~~a~dv~~~s~~LWVGnL~~~vte~dL~~~F~~fG~Le~v~~~~------~rgfAFVeF~~i~DAv~A~~~L~ 544 (1075)
+|--.+||-|.+ -|=|+||||-|..+.+|+.|+.+|++||+|+.|.+++ ++|||||+|++.+|-..|.+..+
T Consensus 87 ~wdP~~dp~a~g--DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~ad 164 (335)
T KOG0113|consen 87 LWDPNNDPNAIG--DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDAD 164 (335)
T ss_pred hcCCCCCCcccC--CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhcc
Confidence 577889999988 8999999999999999999999999999999999864 79999999999999999999999
Q ss_pred CCcee
Q 001454 545 NHFSW 549 (1075)
Q Consensus 545 G~~~~ 549 (1075)
|..+-
T Consensus 165 G~~Id 169 (335)
T KOG0113|consen 165 GIKID 169 (335)
T ss_pred Cceec
Confidence 99875
No 39
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.70 E-value=3.7e-08 Score=82.16 Aligned_cols=46 Identities=28% Similarity=0.426 Sum_probs=42.2
Q ss_pred HHHHhhccCCcceEEEeccC-ceEEEEecCHHHHHHHHHhhcCCcee
Q 001454 504 IRFQIDRFGPLEHFFFFPIK-GFALVEYINIIDAIRAREYIRNHFSW 549 (1075)
Q Consensus 504 L~~~F~~fG~Le~v~~~~~r-gfAFVeF~~i~DAv~A~~~L~G~~~~ 549 (1075)
|..+|++||+|+++.+.+.+ ++|||+|.+.+||..|++.|+|..+.
T Consensus 1 L~~~f~~fG~V~~i~~~~~~~~~a~V~f~~~~~A~~a~~~l~~~~~~ 47 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKKRGFAFVEFASVEDAQKAIEQLNGRQFN 47 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTSTTEEEEEESSHHHHHHHHHHHTTSEET
T ss_pred ChHHhCCcccEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 67899999999999999976 99999999999999999999999865
No 40
>PLN03213 repressor of silencing 3; Provisional
Probab=98.69 E-value=3e-08 Score=113.53 Aligned_cols=70 Identities=11% Similarity=0.160 Sum_probs=61.5
Q ss_pred CceEEeccCCCccCHHHHHHHhhccCCcceEEEec--cCceEEEEecCH--HHHHHHHHhhcCCcee----EEEEeec
Q 001454 487 SKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP--IKGFALVEYINI--IDAIRAREYIRNHFSW----RVKFMDV 556 (1075)
Q Consensus 487 s~~LWVGnL~~~vte~dL~~~F~~fG~Le~v~~~~--~rgfAFVeF~~i--~DAv~A~~~L~G~~~~----RI~F~r~ 556 (1075)
.-.||||||+.+|+++||+..|..||.|.+|.+.+ .||||||+|... .++.+|+..|+|.... ||.=+++
T Consensus 10 gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAKP 87 (759)
T PLN03213 10 GVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAKE 87 (759)
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeeccH
Confidence 45899999999999999999999999999999977 899999999987 6899999999999743 4544444
No 41
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=98.69 E-value=2.6e-08 Score=98.41 Aligned_cols=103 Identities=20% Similarity=0.290 Sum_probs=80.0
Q ss_pred cccccccCceEEeccCCCccCHHHHHHHhhccCCcceEEE------eccCceEEEEecCHHHHHHHHHhhcCCcee----
Q 001454 480 AMDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFF------FPIKGFALVEYINIIDAIRAREYIRNHFSW---- 549 (1075)
Q Consensus 480 a~dv~~~s~~LWVGnL~~~vte~dL~~~F~~fG~Le~v~~------~~~rgfAFVeF~~i~DAv~A~~~L~G~~~~---- 549 (1075)
..+-...||.||||||+--++|+.|-++|+++|+|..|.+ ..+=||+||||-..+||.+|++++.|+++=
T Consensus 29 ~~~a~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~i 108 (153)
T KOG0121|consen 29 QLEALRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPI 108 (153)
T ss_pred HHHHHhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccce
Confidence 3455678999999999999999999999999999999997 347899999999999999999999999764
Q ss_pred EEEEeecCCCCcccccceeccccceEEEccCCCchhHHHHHHhhhc
Q 001454 550 RVKFMDVGLGTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYK 595 (1075)
Q Consensus 550 RI~F~r~~~g~~g~~~g~~~~~s~~lwVG~iss~~~keeLf~E~~k 595 (1075)
||++- . |+..|.-.|- +.+--+.+||...+++.
T Consensus 109 r~D~D-~-----GF~eGRQyGR-------G~sGGqVrde~r~d~D~ 141 (153)
T KOG0121|consen 109 RIDWD-A-----GFVEGRQYGR-------GKSGGQVRDEYRTDYDP 141 (153)
T ss_pred eeecc-c-----cchhhhhhcC-------CCCCCeechhhhhhcCc
Confidence 66643 2 4444433321 22333567777777664
No 42
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=98.68 E-value=7.7e-08 Score=79.43 Aligned_cols=61 Identities=30% Similarity=0.444 Sum_probs=56.6
Q ss_pred eEEeccCCCccCHHHHHHHhhccCCcceEEEecc-----CceEEEEecCHHHHHHHHHhhcCCcee
Q 001454 489 QLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPI-----KGFALVEYINIIDAIRAREYIRNHFSW 549 (1075)
Q Consensus 489 ~LWVGnL~~~vte~dL~~~F~~fG~Le~v~~~~~-----rgfAFVeF~~i~DAv~A~~~L~G~~~~ 549 (1075)
+|+|++|+.++++++|+..|.+||+|..+.+... +++|||+|.+.++|..|++.|+|..+.
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~ 66 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELG 66 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeEC
Confidence 4899999999999999999999999999999863 799999999999999999999998643
No 43
>smart00360 RRM RNA recognition motif.
Probab=98.68 E-value=6e-08 Score=79.21 Aligned_cols=58 Identities=29% Similarity=0.421 Sum_probs=53.1
Q ss_pred eccCCCccCHHHHHHHhhccCCcceEEEecc------CceEEEEecCHHHHHHHHHhhcCCcee
Q 001454 492 LGSFGPEASEAHIRFQIDRFGPLEHFFFFPI------KGFALVEYINIIDAIRAREYIRNHFSW 549 (1075)
Q Consensus 492 VGnL~~~vte~dL~~~F~~fG~Le~v~~~~~------rgfAFVeF~~i~DAv~A~~~L~G~~~~ 549 (1075)
|+||+.+++++||+..|++||+|+.+.+... +|||||+|.+.++|.+|++.|+|..+.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~ 64 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELD 64 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeC
Confidence 6899999999999999999999999998764 579999999999999999999987654
No 44
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=1.2e-08 Score=107.98 Aligned_cols=93 Identities=24% Similarity=0.404 Sum_probs=77.2
Q ss_pred cCceEEeccCCCccCHHHHHHHhhccCCcceEEE------eccCceEEEEecCHHHHHHHHHhhcCCcee----EEEEee
Q 001454 486 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFF------FPIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMD 555 (1075)
Q Consensus 486 ~s~~LWVGnL~~~vte~dL~~~F~~fG~Le~v~~------~~~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~r 555 (1075)
.-|.||||.|...|+|.-|.+.|-.||.|.+|.+ -+-||||||+|+..+||.+|++.|++..++ ||.|++
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~Ak 88 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAK 88 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecC
Confidence 3589999999999999999999999999999987 248999999999999999999999999876 999998
Q ss_pred cCCCCcccccceeccccceEEEccCCCchhHHHHHHhhh
Q 001454 556 VGLGTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESY 594 (1075)
Q Consensus 556 ~~~g~~g~~~g~~~~~s~~lwVG~iss~~~keeLf~E~~ 594 (1075)
|- | +..++. .+.|++|+-|.-..
T Consensus 89 P~---k-----ikegsq--------kPvWADDdWlkk~~ 111 (298)
T KOG0111|consen 89 PE---K-----IKEGSQ--------KPVWADDDWLKKQQ 111 (298)
T ss_pred Cc---c-----ccCCCC--------CCcccCcHHHHHhc
Confidence 81 1 112334 45667777666544
No 45
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.66 E-value=5.1e-08 Score=93.57 Aligned_cols=63 Identities=16% Similarity=0.232 Sum_probs=58.8
Q ss_pred CceEEeccCCCccCHHHHHHHhhccCCcceEEEec---cCceEEEEecCHHHHHHHHHhhcCCcee
Q 001454 487 SKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP---IKGFALVEYINIIDAIRAREYIRNHFSW 549 (1075)
Q Consensus 487 s~~LWVGnL~~~vte~dL~~~F~~fG~Le~v~~~~---~rgfAFVeF~~i~DAv~A~~~L~G~~~~ 549 (1075)
++-|||-||+-++|.+|.-++|++||+|.+|++=. -||.|||-|+|+.||+.|++.|.|-.++
T Consensus 18 nriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~ 83 (124)
T KOG0114|consen 18 NRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVD 83 (124)
T ss_pred heeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccC
Confidence 67799999999999999999999999999999843 8999999999999999999999998754
No 46
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=98.65 E-value=7e-06 Score=95.08 Aligned_cols=112 Identities=9% Similarity=0.067 Sum_probs=73.1
Q ss_pred cCHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhcCCcee------EEEEeecCCCCcccccceecccc
Q 001454 499 ASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW------RVKFMDVGLGTKGVINGVAVGSC 572 (1075)
Q Consensus 499 vte~dL~~~F~~fG~Le~v~~~~~rgfAFVeF~~i~DAv~A~~~L~G~~~~------RI~F~r~~~g~~g~~~g~~~~~s 572 (1075)
.+.+|=+.+|..-|+ +++++...=-=-|+.|.+. +..-++.+-|.... |-.|+|. |.+...
T Consensus 21 Lt~~ene~lf~~lgk-~~~~l~aAVVqLY~a~p~~--~~W~~~~~~Gal~lVkD~~~rsyFlrl----------~di~~~ 87 (569)
T KOG3671|consen 21 LTSEENETLFKLLGK-KCKTLAAAVVQLYKAYPDP--NHWNKTGLCGALCLVKDNAQRSYFLRL----------VDIVNN 87 (569)
T ss_pred cchhHHHHHHHHhcc-chhhHHHHHHHHHhhcCCh--hhhccccCceeEEEeeccccceeeeEE----------eeecCc
Confidence 677888899999999 8888743111114455554 45666666665432 5666655 445556
Q ss_pred ceEEEccCCCchhHHHHHHhhhcccccCCceeecCCCCCccc-ccccCHHHHHHHHHHHhhcc
Q 001454 573 FHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALL-MEFRTPEEATTAMAHLRQHR 634 (1075)
Q Consensus 573 ~~lwVG~iss~~~keeLf~E~~k~~~kgp~~f~dlser~~Lp-VEF~s~edA~~A~~~lr~~r 634 (1075)
+.|| +.||...|+- .....-|..|+.+++.- +-|.+.+||..=++++..+.
T Consensus 88 rliW---------dqELY~nf~y--~q~r~ffhtFegddc~aGLnF~~E~EA~~F~k~V~~r~ 139 (569)
T KOG3671|consen 88 RLIW---------DQELYQNFEY--RQPRTFFHTFEGDDCQAGLNFASEEEAQKFRKKVQDRI 139 (569)
T ss_pred eeee---------hHHhhhhcee--ccCccceeeeccccceeeecccCHHHHHHHHHHHHHHh
Confidence 6787 6788888875 33333444555555543 88999999999888876543
No 47
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=98.64 E-value=2.1e-08 Score=113.71 Aligned_cols=72 Identities=24% Similarity=0.433 Sum_probs=67.8
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec-----cCceEEEEecCHHHHHHHHHhhcCCcee-------EEE
Q 001454 485 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP-----IKGFALVEYINIIDAIRAREYIRNHFSW-------RVK 552 (1075)
Q Consensus 485 ~~s~~LWVGnL~~~vte~dL~~~F~~fG~Le~v~~~~-----~rgfAFVeF~~i~DAv~A~~~L~G~~~~-------RI~ 552 (1075)
...++||||-|+-.++|.|+++.|.+||-||++.+.+ .||||||-|..-+-|+.|+++|+|+... -|+
T Consensus 122 ~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVk 201 (510)
T KOG0144|consen 122 VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVK 201 (510)
T ss_pred ccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEE
Confidence 5678999999999999999999999999999999976 8999999999999999999999999653 799
Q ss_pred Eeec
Q 001454 553 FMDV 556 (1075)
Q Consensus 553 F~r~ 556 (1075)
|+|+
T Consensus 202 FADt 205 (510)
T KOG0144|consen 202 FADT 205 (510)
T ss_pred eccc
Confidence 9999
No 48
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.64 E-value=1.2e-07 Score=112.66 Aligned_cols=150 Identities=17% Similarity=0.144 Sum_probs=116.9
Q ss_pred ccccccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec--c-------CceEEEEecCHHHHHHHHHhhcCCcee--
Q 001454 481 MDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP--I-------KGFALVEYINIIDAIRAREYIRNHFSW-- 549 (1075)
Q Consensus 481 ~dv~~~s~~LWVGnL~~~vte~dL~~~F~~fG~Le~v~~~~--~-------rgfAFVeF~~i~DAv~A~~~L~G~~~~-- 549 (1075)
-+..++++ |||-||.-+.+.++|+..|.++|.|-++.+-- . .|||||+|.+.++|..|++.|||+.+-
T Consensus 510 ~~~~~~t~-lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH 588 (725)
T KOG0110|consen 510 EDEETETK-LFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGH 588 (725)
T ss_pred hccccchh-hhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCc
Confidence 55566666 99999999999999999999999999997743 2 299999999999999999999999874
Q ss_pred --EEEEeecCCCCcccccceec---cccceEEEccCCCchhHHHHHHhhhcccccCCceee---c-CCCCCcccccccCH
Q 001454 550 --RVKFMDVGLGTKGVINGVAV---GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT---D-LSCEGALLMEFRTP 620 (1075)
Q Consensus 550 --RI~F~r~~~g~~g~~~g~~~---~~s~~lwVG~iss~~~keeLf~E~~k~~~kgp~~f~---d-lser~~LpVEF~s~ 620 (1075)
.++|... ...+..+ .-. ..+..|||=||+=+.++.|+..=+.++|.+-.+++. + ...++..++||-++
T Consensus 589 ~l~lk~S~~--k~~~~~g-K~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~ 665 (725)
T KOG0110|consen 589 KLELKISEN--KPASTVG-KKKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTP 665 (725)
T ss_pred eEEEEeccC--ccccccc-cccccccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCc
Confidence 5666641 1111111 111 246799999999999999999988888866655552 2 22356689999999
Q ss_pred HHHHHHHHHHhhcc
Q 001454 621 EEATTAMAHLRQHR 634 (1075)
Q Consensus 621 edA~~A~~~lr~~r 634 (1075)
.||.+||.+|-..|
T Consensus 666 ~ea~nA~~al~STH 679 (725)
T KOG0110|consen 666 REAKNAFDALGSTH 679 (725)
T ss_pred HHHHHHHHhhcccc
Confidence 99999998776544
No 49
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.64 E-value=1.1e-07 Score=101.09 Aligned_cols=150 Identities=18% Similarity=0.234 Sum_probs=114.6
Q ss_pred cCceEEeccCCCccCHHHHHHHhhccCCcceEEE-eccCc------eEEEEecCHHHHHHHHHhhcCCce-------eEE
Q 001454 486 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFF-FPIKG------FALVEYINIIDAIRAREYIRNHFS-------WRV 551 (1075)
Q Consensus 486 ~s~~LWVGnL~~~vte~dL~~~F~~fG~Le~v~~-~~~rg------fAFVeF~~i~DAv~A~~~L~G~~~-------~RI 551 (1075)
+-|+|||..|+.||-..||--+|.+|---|.-.+ +.+|+ +|||.|.+..+|++|+++|+|-+. .||
T Consensus 33 ~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhi 112 (284)
T KOG1457|consen 33 AVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHI 112 (284)
T ss_pred ccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEe
Confidence 4599999999999999999999999987775444 34555 999999999999999999999865 299
Q ss_pred EEeecC--------CCCccc------------------------------------------------------------
Q 001454 552 KFMDVG--------LGTKGV------------------------------------------------------------ 563 (1075)
Q Consensus 552 ~F~r~~--------~g~~g~------------------------------------------------------------ 563 (1075)
+|+++. .|+-|.
T Consensus 113 ElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~~P~ 192 (284)
T KOG1457|consen 113 ELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSKAPS 192 (284)
T ss_pred eehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhcCCc
Confidence 999653 121111
Q ss_pred ---------ccceeccccceEEEccCCCchhHHHHHHhhhcccccCCceeecCCCCCcccccccCHHHHHHHHHHHhhcc
Q 001454 564 ---------INGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHR 634 (1075)
Q Consensus 564 ---------~~g~~~~~s~~lwVG~iss~~~keeLf~E~~k~~~kgp~~f~dlser~~LpVEF~s~edA~~A~~~lr~~r 634 (1075)
-.|-....|..|+|.+.++...+|||..=+..+.-+-..++..-..--.+|+||+.+|.|+.||-||++..
T Consensus 193 a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~~g~~vaf~~~~~~~~at~am~~lqg~~ 272 (284)
T KOG1457|consen 193 ANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRARGGMPVAFADFEEIEQATDAMNHLQGNL 272 (284)
T ss_pred ccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecCCCcceEeecHHHHHHHHHHHHHhhcce
Confidence 01111124889999999999999999888877554444444444444567788999999999999999865
Q ss_pred c
Q 001454 635 K 635 (1075)
Q Consensus 635 ~ 635 (1075)
.
T Consensus 273 ~ 273 (284)
T KOG1457|consen 273 L 273 (284)
T ss_pred e
Confidence 3
No 50
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.63 E-value=5.7e-08 Score=105.37 Aligned_cols=64 Identities=20% Similarity=0.336 Sum_probs=61.8
Q ss_pred cCceEEeccCCCccCHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhcCCcee
Q 001454 486 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW 549 (1075)
Q Consensus 486 ~s~~LWVGnL~~~vte~dL~~~F~~fG~Le~v~~~~~rgfAFVeF~~i~DAv~A~~~L~G~~~~ 549 (1075)
..+.||||||.+..+|++|+..|++||+|-.|++|+.+|||||-|+.-|-|-+|+-.|+|+.+.
T Consensus 163 ~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~qGYaFVrF~tkEaAahAIv~mNntei~ 226 (321)
T KOG0148|consen 163 DNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKDQGYAFVRFETKEAAAHAIVQMNNTEIG 226 (321)
T ss_pred CCceEEeCCcCccccHHHHHHhcccCCcceEEEEecccceEEEEecchhhHHHHHHHhcCceeC
Confidence 3689999999999999999999999999999999999999999999999999999999999876
No 51
>PLN03121 nucleic acid binding protein; Provisional
Probab=98.62 E-value=8.8e-08 Score=103.14 Aligned_cols=68 Identities=16% Similarity=0.131 Sum_probs=60.5
Q ss_pred CceEEeccCCCccCHHHHHHHhhccCCcceEEEec---cCceEEEEecCHHHHHHHHHhhcCCcee--EEEEee
Q 001454 487 SKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP---IKGFALVEYINIIDAIRAREYIRNHFSW--RVKFMD 555 (1075)
Q Consensus 487 s~~LWVGnL~~~vte~dL~~~F~~fG~Le~v~~~~---~rgfAFVeF~~i~DAv~A~~~L~G~~~~--RI~F~r 555 (1075)
...|+||||++.+||+||++.|+.||+|++|.+.+ .++||||+|++.++|..|+ .|+|..+. +|...+
T Consensus 5 g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It~ 77 (243)
T PLN03121 5 GYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAV-LLSGATIVDQRVCITR 77 (243)
T ss_pred ceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEEe
Confidence 46899999999999999999999999999999987 4589999999999999998 79999876 555443
No 52
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.59 E-value=4.5e-07 Score=96.41 Aligned_cols=153 Identities=14% Similarity=0.188 Sum_probs=122.5
Q ss_pred cccccCceEEeccCCCccCHHHHHH----HhhccCCcceEEEec---cCceEEEEecCHHHHHHHHHhhcCCcee----E
Q 001454 482 DIFSASKQLWLGSFGPEASEAHIRF----QIDRFGPLEHFFFFP---IKGFALVEYINIIDAIRAREYIRNHFSW----R 550 (1075)
Q Consensus 482 dv~~~s~~LWVGnL~~~vte~dL~~----~F~~fG~Le~v~~~~---~rgfAFVeF~~i~DAv~A~~~L~G~~~~----R 550 (1075)
..+.+..+|||-||...+-.+||+. +|+.||.|-+|..+. -||=|||.|.+++-|-.|++.|+|.... |
T Consensus 4 ~~~~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mr 83 (221)
T KOG4206|consen 4 MSVNPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMR 83 (221)
T ss_pred cccCCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhh
Confidence 3456667999999999999999999 999999999999873 8999999999999999999999999765 8
Q ss_pred EEEeecC--CCCc-----------------------ccccce----------------eccccceEEEccCCCchhHHHH
Q 001454 551 VKFMDVG--LGTK-----------------------GVINGV----------------AVGSCFHVYVGNIPNQWAKDEI 589 (1075)
Q Consensus 551 I~F~r~~--~g~~-----------------------g~~~g~----------------~~~~s~~lwVG~iss~~~keeL 589 (1075)
|-|+... +.+| -..||- ...+++.|++-+|++....|.+
T Consensus 84 iqyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l 163 (221)
T KOG4206|consen 84 IQYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEML 163 (221)
T ss_pred eecccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHHH
Confidence 8888442 1121 112221 1357899999999999988888
Q ss_pred HHhhhcccccCCceeecCCCCCcccccccCHHHHHHHHHHHhhccc
Q 001454 590 LHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHRK 635 (1075)
Q Consensus 590 f~E~~k~~~kgp~~f~dlser~~LpVEF~s~edA~~A~~~lr~~r~ 635 (1075)
..-+..+.-+..+++.. ..++.++|||++=..|..|+.++.+-+.
T Consensus 164 ~~lf~qf~g~keir~i~-~~~~iAfve~~~d~~a~~a~~~lq~~~i 208 (221)
T KOG4206|consen 164 SDLFEQFPGFKEIRLIP-PRSGIAFVEFLSDRQASAAQQALQGFKI 208 (221)
T ss_pred HHHHhhCcccceeEecc-CCCceeEEecchhhhhHHHhhhhcccee
Confidence 87777766666655433 3578899999999999999999887553
No 53
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=98.55 E-value=6.8e-08 Score=101.65 Aligned_cols=69 Identities=19% Similarity=0.290 Sum_probs=62.3
Q ss_pred ceEEeccCCCccCHHHHHHHhhccCCcceEEEe------ccCceEEEEecCHHHHHHHHHhhcCCcee----EEEEeec
Q 001454 488 KQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF------PIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDV 556 (1075)
Q Consensus 488 ~~LWVGnL~~~vte~dL~~~F~~fG~Le~v~~~------~~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~r~ 556 (1075)
-.|-|-||..-++.++|+.+|++||.|-+|.|- .+||||||-|.+-.||++|+++|+|..+- ||.|++=
T Consensus 14 ~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ary 92 (256)
T KOG4207|consen 14 TSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMARY 92 (256)
T ss_pred eeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhhc
Confidence 368999999999999999999999999999983 28999999999999999999999999874 7777754
No 54
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=98.43 E-value=8e-07 Score=106.33 Aligned_cols=25 Identities=8% Similarity=0.275 Sum_probs=18.7
Q ss_pred ceeeeeeecceeccCcccceeeeec
Q 001454 924 QLLQYQWQGALCKSGVHYCTIYAQR 948 (1075)
Q Consensus 924 ~~v~~qWqGsL~kSg~~yCtil~s~ 948 (1075)
.--++-|....++.-+.+|.-.=+.
T Consensus 625 ~Mrr~nW~kI~p~d~s~~cFWvkv~ 649 (1102)
T KOG1924|consen 625 PMRRFNWSKIVPRDLSENCFWVKVN 649 (1102)
T ss_pred ccccCCccccCccccCccceeeecc
Confidence 3457789998889999999665443
No 55
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.43 E-value=6.7e-07 Score=101.89 Aligned_cols=148 Identities=16% Similarity=0.208 Sum_probs=116.1
Q ss_pred ceEEeccCCCccCHHHHHHHhhccCCcceEEEec-----cCceEEEEecCHHHHHHHHHhhcCCcee--EEEEeecCCC-
Q 001454 488 KQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP-----IKGFALVEYINIIDAIRAREYIRNHFSW--RVKFMDVGLG- 559 (1075)
Q Consensus 488 ~~LWVGnL~~~vte~dL~~~F~~fG~Le~v~~~~-----~rgfAFVeF~~i~DAv~A~~~L~G~~~~--RI~F~r~~~g- 559 (1075)
-+++|.++.-+.++.+|...|..||+|.++.+-+ .++|+||+|.+.++|..|++.|+|+... ++...+-+-+
T Consensus 168 t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~g~~~~~gfv~f~~~e~a~~av~~l~~~~~~~~~~~V~~aqkk~ 247 (369)
T KOG0123|consen 168 TNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDSIGKSKGFGFVNFENPEDAKKAVETLNGKIFGDKELYVGRAQKKS 247 (369)
T ss_pred hhhheeccccccchHHHHHhhcccCcceEEEEeecCCCCCCCccceeecChhHHHHHHHhccCCcCCccceeecccccch
Confidence 4678999999999999999999999999999853 6999999999999999999999999764 2222222110
Q ss_pred -----Cc-----ccccceeccccceEEEccCCCchhHHHHHHhhhcccccCCcee---ecCCCCCcccccccCHHHHHHH
Q 001454 560 -----TK-----GVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV---TDLSCEGALLMEFRTPEEATTA 626 (1075)
Q Consensus 560 -----~~-----g~~~g~~~~~s~~lwVG~iss~~~keeLf~E~~k~~~kgp~~f---~dlser~~LpVEF~s~edA~~A 626 (1075)
.+ -.......-...+|||=|+......++|+..+..++.+....+ .....++..+|+|.+.++|..|
T Consensus 248 e~~~~l~~~~~~~~~~~~~~~~~~nl~vknld~~~~~e~L~~~f~~~GeI~s~kv~~~~~g~skG~gfV~fs~~eeA~~A 327 (369)
T KOG0123|consen 248 EREAELKRKFEQEFAKRSVSLQGANLYVKNLDETLSDEKLRKIFSSFGEITSAKVMVDENGKSKGFGFVEFSSPEEAKKA 327 (369)
T ss_pred hhHHHHhhhhHhhhhhccccccccccccccCccccchhHHHHHHhcccceeeEEEEeccCCCccceEEEEcCCHHHHHHH
Confidence 00 0001111125789999999999999999999998886665433 2377889999999999999999
Q ss_pred HHHHhhccc
Q 001454 627 MAHLRQHRK 635 (1075)
Q Consensus 627 ~~~lr~~r~ 635 (1075)
|..++++..
T Consensus 328 ~~~~n~~~i 336 (369)
T KOG0123|consen 328 MTEMNGRLI 336 (369)
T ss_pred HHhhChhhh
Confidence 999988664
No 56
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=98.42 E-value=3.4e-07 Score=101.44 Aligned_cols=70 Identities=21% Similarity=0.310 Sum_probs=64.2
Q ss_pred CceEEeccCCCccCHHHHHHHhhccCCcceEEEe---c-cCceEEEEecCHHHHHHHHHhhcCCcee--EEEEeec
Q 001454 487 SKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF---P-IKGFALVEYINIIDAIRAREYIRNHFSW--RVKFMDV 556 (1075)
Q Consensus 487 s~~LWVGnL~~~vte~dL~~~F~~fG~Le~v~~~---~-~rgfAFVeF~~i~DAv~A~~~L~G~~~~--RI~F~r~ 556 (1075)
-|.|+|.||+=.-.|-||+..|++||+|-+|-+. | +|||.||-|++++||.+|++.|.|+.+- +||+-+-
T Consensus 96 pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~A 171 (376)
T KOG0125|consen 96 PKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNA 171 (376)
T ss_pred CceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEecc
Confidence 4899999999999999999999999999999863 4 9999999999999999999999999885 7887744
No 57
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.39 E-value=3.9e-07 Score=108.20 Aligned_cols=64 Identities=23% Similarity=0.409 Sum_probs=60.4
Q ss_pred cCceEEeccCCCccCHHHHHHHhhccCCcceEEE---------eccCceEEEEecCHHHHHHHHHhhcCCcee
Q 001454 486 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFF---------FPIKGFALVEYINIIDAIRAREYIRNHFSW 549 (1075)
Q Consensus 486 ~s~~LWVGnL~~~vte~dL~~~F~~fG~Le~v~~---------~~~rgfAFVeF~~i~DAv~A~~~L~G~~~~ 549 (1075)
-+.|||||||.+.++|..|...|++||||-+|++ .++|+++||.|.+-.||.+|+++|||.-+.
T Consensus 173 ~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~ 245 (877)
T KOG0151|consen 173 QTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVM 245 (877)
T ss_pred cccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeee
Confidence 4789999999999999999999999999999998 358999999999999999999999999776
No 58
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=98.35 E-value=2.4e-06 Score=92.60 Aligned_cols=149 Identities=17% Similarity=0.226 Sum_probs=109.5
Q ss_pred CceEEeccCCCccCHHHHHHHhhccCCcceEEEe------ccCceEEEEecCHHHHHHHHHhhcCCcee------EEEEe
Q 001454 487 SKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF------PIKGFALVEYINIIDAIRAREYIRNHFSW------RVKFM 554 (1075)
Q Consensus 487 s~~LWVGnL~~~vte~dL~~~F~~fG~Le~v~~~------~~rgfAFVeF~~i~DAv~A~~~L~G~~~~------RI~F~ 554 (1075)
.-+|||..|+-..|..|||.+|++||.|-.-++. -.||-+||-|...++|+.|++.|+|+.+- -|+|+
T Consensus 127 ~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKFa 206 (360)
T KOG0145|consen 127 DANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKFA 206 (360)
T ss_pred ccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEec
Confidence 3589999999999999999999999999755542 28999999999999999999999999763 78888
Q ss_pred ec--------------------CCC------Cc---------------------ccccceec-------cccceEEEccC
Q 001454 555 DV--------------------GLG------TK---------------------GVINGVAV-------GSCFHVYVGNI 580 (1075)
Q Consensus 555 r~--------------------~~g------~~---------------------g~~~g~~~-------~~s~~lwVG~i 580 (1075)
.- ..| .| +.|.|.+. +.---|+|=+.
T Consensus 207 nnPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~~g~ciFvYNL 286 (360)
T KOG0145|consen 207 NNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGPGGGWCIFVYNL 286 (360)
T ss_pred CCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeeeccCCCCCCeeEEEEEec
Confidence 21 111 11 11222221 23455888899
Q ss_pred CCchhHHHHHHhhhcccccCCcee-ecC---CCCCcccccccCHHHHHHHHHHHhhccc
Q 001454 581 PNQWAKDEILHESYKVVYKGPYMV-TDL---SCEGALLMEFRTPEEATTAMAHLRQHRK 635 (1075)
Q Consensus 581 ss~~~keeLf~E~~k~~~kgp~~f-~dl---ser~~LpVEF~s~edA~~A~~~lr~~r~ 635 (1075)
++..++--|..=+.-|+....+.+ .|+ ..|++.||-..+-+||+-||+.|++.+.
T Consensus 287 spd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~l 345 (360)
T KOG0145|consen 287 SPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRL 345 (360)
T ss_pred CCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccc
Confidence 887665544444444444444433 444 4789999999999999999999999774
No 59
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.32 E-value=2.1e-07 Score=112.65 Aligned_cols=139 Identities=19% Similarity=0.233 Sum_probs=116.9
Q ss_pred cccccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec-----cCceEEEEecCHHHHHHHHHhhcCCcee----EEE
Q 001454 482 DIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP-----IKGFALVEYINIIDAIRAREYIRNHFSW----RVK 552 (1075)
Q Consensus 482 dv~~~s~~LWVGnL~~~vte~dL~~~F~~fG~Le~v~~~~-----~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~ 552 (1075)
|=+-+++.|++|||...+++.+|+..|+.||.++.|.|-. .--||||.|.+..-|..|+-.|.|..+. ||.
T Consensus 367 DD~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~g 446 (975)
T KOG0112|consen 367 DDFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIG 446 (975)
T ss_pred cchhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCccccc
Confidence 3456799999999999999999999999999999999864 3569999999999999999999999876 443
Q ss_pred EeecCCCCcccccceeccccceEEEccCCCchhHHHHHHhhhcccccCCceeecC-CCCCcccccccCHHHHHHHHHHHh
Q 001454 553 FMDVGLGTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDL-SCEGALLMEFRTPEEATTAMAHLR 631 (1075)
Q Consensus 553 F~r~~~g~~g~~~g~~~~~s~~lwVG~iss~~~keeLf~E~~k~~~kgp~~f~dl-ser~~LpVEF~s~edA~~A~~~lr 631 (1075)
+ |. + .++++..+|||+..+......+..|++-|+ ++..+++ -.+-++++.|+++.-|+.|+++||
T Consensus 447 l-----G~-----~-kst~ttr~~sgglg~w~p~~~l~r~fd~fG---pir~Idy~hgq~yayi~yes~~~aq~a~~~~r 512 (975)
T KOG0112|consen 447 L-----GQ-----P-KSTPTTRLQSGGLGPWSPVSRLNREFDRFG---PIRIIDYRHGQPYAYIQYESPPAAQAATHDMR 512 (975)
T ss_pred c-----cc-----c-ccccceeeccCCCCCCChHHHHHHHhhccC---cceeeecccCCcceeeecccCccchhhHHHHh
Confidence 2 22 1 367899999999999999999999999655 4444442 235678999999999999999999
Q ss_pred hcc
Q 001454 632 QHR 634 (1075)
Q Consensus 632 ~~r 634 (1075)
+.-
T Consensus 513 gap 515 (975)
T KOG0112|consen 513 GAP 515 (975)
T ss_pred cCc
Confidence 955
No 60
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.20 E-value=1.5e-06 Score=94.36 Aligned_cols=108 Identities=22% Similarity=0.354 Sum_probs=85.8
Q ss_pred cCceEEeccCCCccCHHHHHHHhhccCCcceEEEec-----cCceEEEEecCHHHHHHHHHhhcCCcee-------EEEE
Q 001454 486 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP-----IKGFALVEYINIIDAIRAREYIRNHFSW-------RVKF 553 (1075)
Q Consensus 486 ~s~~LWVGnL~~~vte~dL~~~F~~fG~Le~v~~~~-----~rgfAFVeF~~i~DAv~A~~~L~G~~~~-------RI~F 553 (1075)
..|+||||-|...-+|+|++.+|..||.||++++.+ +||+|||-|..-.||-.|+++|.|+... -|+|
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK~ 97 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVKF 97 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEEe
Confidence 569999999999999999999999999999999975 7999999999999999999999999643 6777
Q ss_pred eecCCCCcccccceeccccceEEEccCCCchhHHHHHHhhhccc-ccCCceeecCCCCCcccccccCHHHHHHHHHH
Q 001454 554 MDVGLGTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVV-YKGPYMVTDLSCEGALLMEFRTPEEATTAMAH 629 (1075)
Q Consensus 554 ~r~~~g~~g~~~g~~~~~s~~lwVG~iss~~~keeLf~E~~k~~-~kgp~~f~dlser~~LpVEF~s~edA~~A~~~ 629 (1075)
+|. .||.-+.-|.... ..|-+ +.|.+.|----.++.|+.-
T Consensus 98 ADT----------------------------dkER~lRRMQQma~qlGm~--------~Pl~l~~g~~~ay~qalmQ 138 (371)
T KOG0146|consen 98 ADT----------------------------DKERTLRRMQQMAGQLGMF--------NPLALPFGAYGAYAQALMQ 138 (371)
T ss_pred ccc----------------------------hHHHHHHHHHHHHHHhccc--------CccccccchhHHHHHHHHH
Confidence 776 6777777666422 22221 3366677666666666443
No 61
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.19 E-value=1e-06 Score=102.96 Aligned_cols=68 Identities=19% Similarity=0.234 Sum_probs=64.4
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec-cCceEEEEecCHHHHHHHHHhhcCCcee--EEE
Q 001454 485 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP-IKGFALVEYINIIDAIRAREYIRNHFSW--RVK 552 (1075)
Q Consensus 485 ~~s~~LWVGnL~~~vte~dL~~~F~~fG~Le~v~~~~-~rgfAFVeF~~i~DAv~A~~~L~G~~~~--RI~ 552 (1075)
.+++.|||=||++.|++++|+.+|+.||+|+.|+..+ .+|-.||+|-|++||++|+++|++..+. ||+
T Consensus 73 ~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 73 MNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred CccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 4689999999999999999999999999999999888 9999999999999999999999999886 777
No 62
>smart00361 RRM_1 RNA recognition motif.
Probab=98.16 E-value=4.2e-06 Score=73.45 Aligned_cols=49 Identities=14% Similarity=0.200 Sum_probs=42.5
Q ss_pred HHHHHHHhh----ccCCcceEE-E-e-------ccCceEEEEecCHHHHHHHHHhhcCCcee
Q 001454 501 EAHIRFQID----RFGPLEHFF-F-F-------PIKGFALVEYINIIDAIRAREYIRNHFSW 549 (1075)
Q Consensus 501 e~dL~~~F~----~fG~Le~v~-~-~-------~~rgfAFVeF~~i~DAv~A~~~L~G~~~~ 549 (1075)
++||++.|+ +||.|.+|. + . ..||||||+|.+.+||.+|++.|+|+.+.
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~ 63 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFD 63 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 578888888 999999985 3 2 15999999999999999999999998764
No 63
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=98.16 E-value=7.3e-06 Score=95.66 Aligned_cols=148 Identities=14% Similarity=0.171 Sum_probs=115.1
Q ss_pred ceEEeccCCCccCHHHHHHHhhccCCcceEEEe------ccCceEEEEecCHHHHHHHHHhhcCCcee----EEEEeecC
Q 001454 488 KQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF------PIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDVG 557 (1075)
Q Consensus 488 ~~LWVGnL~~~vte~dL~~~F~~fG~Le~v~~~------~~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~r~~ 557 (1075)
.+|+|++|+.+++.++|++.|+.+|||..-.+. ..|||+||-|--.+|+.+|+..+.++.+. +++++-.+
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R 85 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKKR 85 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceeccccccccc
Confidence 689999999999999999999999999966553 37999999999999999999999997653 77777332
Q ss_pred C-------CCccc----ccc------eeccccceEEEccCCCchhHHHHHHhhhcccccCCcee---ecCCCCCcccccc
Q 001454 558 L-------GTKGV----ING------VAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV---TDLSCEGALLMEF 617 (1075)
Q Consensus 558 ~-------g~~g~----~~g------~~~~~s~~lwVG~iss~~~keeLf~E~~k~~~kgp~~f---~dlser~~LpVEF 617 (1075)
. |.+-. +.- -..++--.|.|-|.|=+..+++|..=+-.+|.+..+.| .|..-.+.+||.|
T Consensus 86 ~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~f 165 (678)
T KOG0127|consen 86 ARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQF 165 (678)
T ss_pred ccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEE
Confidence 1 11100 000 00123557899999999999999888888886665544 3444458999999
Q ss_pred cCHHHHHHHHHHHhhccc
Q 001454 618 RTPEEATTAMAHLRQHRK 635 (1075)
Q Consensus 618 ~s~edA~~A~~~lr~~r~ 635 (1075)
....||..||+.+++.-.
T Consensus 166 k~~~dA~~Al~~~N~~~i 183 (678)
T KOG0127|consen 166 KEKKDAEKALEFFNGNKI 183 (678)
T ss_pred eeHHHHHHHHHhccCcee
Confidence 999999999999998653
No 64
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.11 E-value=4.2e-06 Score=93.61 Aligned_cols=64 Identities=27% Similarity=0.383 Sum_probs=59.2
Q ss_pred cCceEEeccCCCccCHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhcCCcee
Q 001454 486 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW 549 (1075)
Q Consensus 486 ~s~~LWVGnL~~~vte~dL~~~F~~fG~Le~v~~~~~rgfAFVeF~~i~DAv~A~~~L~G~~~~ 549 (1075)
....||||+|.+.++|.||+..|.+||+|+++.+...+++|||+|..-+-|+.|.+.+-.+.+.
T Consensus 227 ~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~~CAFv~ftTR~aAE~Aae~~~n~lvI 290 (377)
T KOG0153|consen 227 SIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRKGCAFVTFTTREAAEKAAEKSFNKLVI 290 (377)
T ss_pred ceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecccccceeeehhhHHHHHHHHhhcceeee
Confidence 3679999999999999999999999999999999999999999999999999999888765554
No 65
>PHA03247 large tegument protein UL36; Provisional
Probab=98.07 E-value=0.00022 Score=94.45 Aligned_cols=27 Identities=11% Similarity=0.308 Sum_probs=16.5
Q ss_pred Cccccccchh-hhhhhhhhhhhhccCCC
Q 001454 85 TSSVIRGICS-AVFHNVLDFFISSFDGK 111 (1075)
Q Consensus 85 ~s~~~~~ics-~v~~~vl~ff~~~f~gk 111 (1075)
+..||-|+|+ +.|.+.=.=|+..++-|
T Consensus 1761 s~~~V~~Lrad~~Y~RLPak~~g~i~aK 1788 (3151)
T PHA03247 1761 ATNTVLGLRADAHYERLPAKYQGALGAK 1788 (3151)
T ss_pred HHHHHHhhhcchhhccCCHHHhchhhHH
Confidence 3456777776 46666666666666554
No 66
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=98.03 E-value=6.3e-06 Score=88.51 Aligned_cols=57 Identities=19% Similarity=0.365 Sum_probs=51.6
Q ss_pred ceEEeccCCCccCHHHHHHHhhccCCcceEEEe------ccCceEEEEecCHHHHHHHHHhhc
Q 001454 488 KQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF------PIKGFALVEYINIIDAIRAREYIR 544 (1075)
Q Consensus 488 ~~LWVGnL~~~vte~dL~~~F~~fG~Le~v~~~------~~rgfAFVeF~~i~DAv~A~~~L~ 544 (1075)
-++|||+|.=...+++|+.-|++||+|....+. ++|||+||-|+|.+-|.+|++..+
T Consensus 13 TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~ 75 (247)
T KOG0149|consen 13 TKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPN 75 (247)
T ss_pred EEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCC
Confidence 379999999999999999999999999977663 589999999999999999998754
No 67
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.02 E-value=8.9e-06 Score=94.52 Aligned_cols=62 Identities=23% Similarity=0.295 Sum_probs=58.8
Q ss_pred ceEEeccCCCccCHHHHHHHhhccCCcceEEEe------ccCceEEEEecCHHHHHHHHHhhcCCcee
Q 001454 488 KQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF------PIKGFALVEYINIIDAIRAREYIRNHFSW 549 (1075)
Q Consensus 488 ~~LWVGnL~~~vte~dL~~~F~~fG~Le~v~~~------~~rgfAFVeF~~i~DAv~A~~~L~G~~~~ 549 (1075)
+.+|||||+.+++|++|..+|+..|+|-++++. ..|||||++|.+.++|..|++.|+|..+.
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~ 86 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFN 86 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccC
Confidence 899999999999999999999999999999985 38999999999999999999999998754
No 68
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.01 E-value=5.5e-06 Score=91.03 Aligned_cols=96 Identities=23% Similarity=0.388 Sum_probs=70.5
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhcCCcee--EEEEe--ecCCCC
Q 001454 485 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW--RVKFM--DVGLGT 560 (1075)
Q Consensus 485 ~~s~~LWVGnL~~~vte~dL~~~F~~fG~Le~v~~~~~rgfAFVeF~~i~DAv~A~~~L~G~~~~--RI~F~--r~~~g~ 560 (1075)
+++-+|.||||.+.-+..||++.|++||++-+-.+. |+||||.|...+||.+|+++|+|+.+- |+.+. -+++-+
T Consensus 76 k~stkl~vgNis~tctn~ElRa~fe~ygpviecdiv--kdy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~stsrlrt 153 (346)
T KOG0109|consen 76 KASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIV--KDYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRT 153 (346)
T ss_pred CCccccccCCCCccccCHHHhhhhcccCCceeeeee--cceeEEEEeeccchHHHHhcccccccccceeeeeeecccccc
Confidence 467799999999999999999999999999877664 689999999999999999999998654 44443 222212
Q ss_pred cccccceeccccceEEEccCCCchhHH
Q 001454 561 KGVINGVAVGSCFHVYVGNIPNQWAKD 587 (1075)
Q Consensus 561 ~g~~~g~~~~~s~~lwVG~iss~~~ke 587 (1075)
.. ++|....-|=-+=...|+||
T Consensus 154 ap-----gmgDq~~cyrcGkeghwskE 175 (346)
T KOG0109|consen 154 AP-----GMGDQSGCYRCGKEGHWSKE 175 (346)
T ss_pred CC-----CCCCHHHheecccccccccc
Confidence 11 13444444444555566654
No 69
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=97.97 E-value=9.5e-06 Score=90.84 Aligned_cols=131 Identities=15% Similarity=0.215 Sum_probs=97.8
Q ss_pred cCceEEeccCCCccCHHHHHHHhhccCCcceEEEe------ccCceEEEEecCHHHHHHHHHh----hcCCcee------
Q 001454 486 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF------PIKGFALVEYINIIDAIRAREY----IRNHFSW------ 549 (1075)
Q Consensus 486 ~s~~LWVGnL~~~vte~dL~~~F~~fG~Le~v~~~------~~rgfAFVeF~~i~DAv~A~~~----L~G~~~~------ 549 (1075)
.+++|+||+|+.+++++.|++.|+.||.+.+..+. +.|||.||.|.+.+--.+++.. |+|+.+=
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~k~av~ 84 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVEPKRAVS 84 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecccccccCCccccceeccC
Confidence 68999999999999999999999999999977764 4899999999976655544433 5555442
Q ss_pred EEEEeecCCCCcccccceeccccceEEEccCCCchhHHHHHHhhhcccccCCcee----ecCCCCCcccccccCHHHHHH
Q 001454 550 RVKFMDVGLGTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV----TDLSCEGALLMEFRTPEEATT 625 (1075)
Q Consensus 550 RI~F~r~~~g~~g~~~g~~~~~s~~lwVG~iss~~~keeLf~E~~k~~~kgp~~f----~dlser~~LpVEF~s~edA~~ 625 (1075)
|-+..+. .+ -...+.++||+|+....++++...+..+++.....+ .....++.-+|.|++-+.+-.
T Consensus 85 r~~~~~~---~~-------~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdk 154 (311)
T KOG4205|consen 85 REDQTKV---GR-------HLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDK 154 (311)
T ss_pred ccccccc---cc-------ccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccce
Confidence 2221111 00 015789999999999999999999999885554422 336677888999988766655
Q ss_pred H
Q 001454 626 A 626 (1075)
Q Consensus 626 A 626 (1075)
+
T Consensus 155 v 155 (311)
T KOG4205|consen 155 V 155 (311)
T ss_pred e
Confidence 4
No 70
>PHA03247 large tegument protein UL36; Provisional
Probab=97.89 E-value=0.00049 Score=91.36 Aligned_cols=8 Identities=13% Similarity=0.351 Sum_probs=4.4
Q ss_pred cccceEEE
Q 001454 570 GSCFHVYV 577 (1075)
Q Consensus 570 ~~s~~lwV 577 (1075)
.+.++||=
T Consensus 2406 ~p~~VLWe 2413 (3151)
T PHA03247 2406 APLFVLWE 2413 (3151)
T ss_pred ceeEEecc
Confidence 35566664
No 71
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.86 E-value=3.1e-05 Score=92.78 Aligned_cols=147 Identities=16% Similarity=0.140 Sum_probs=105.9
Q ss_pred ceEEeccCCCccCHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhcCCcee----EEEEeecCCC----
Q 001454 488 KQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDVGLG---- 559 (1075)
Q Consensus 488 ~~LWVGnL~~~vte~dL~~~F~~fG~Le~v~~~~~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~r~~~g---- 559 (1075)
.-+.||||+-++..++|...|.+||+|..|.+-+.-.-|+|+|.+..||..|++.|+++... +.+-++...-
T Consensus 386 ~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp~~G~~aiv~fl~p~eAr~Afrklaysr~k~~plyle~aP~dvf~~~p 465 (725)
T KOG0110|consen 386 TVILVKNLPAGTLSEELTEAFLRFGEIGRVLLPPGGTGAIVEFLNPLEARKAFRKLAYSRFKSAPLYLEWAPEDVFTEDP 465 (725)
T ss_pred ceeeeccCccccccHHHHHHhhcccccceeecCcccceeeeeecCccchHHHHHHhchhhhccCccccccChhhhccCCc
Confidence 56899999999999999999999999999954434445999999999999999999998653 2222211100
Q ss_pred ----------Cc------cc---ccce-------------------eccccceEEEccCCCchhHHHHHHhhhcccccCC
Q 001454 560 ----------TK------GV---INGV-------------------AVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGP 601 (1075)
Q Consensus 560 ----------~~------g~---~~g~-------------------~~~~s~~lwVG~iss~~~keeLf~E~~k~~~kgp 601 (1075)
.+ -. .+|. ....++ |||-|..=....+.++..+++.+..--
T Consensus 466 ka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~-lfvkNlnf~Tt~e~l~~~F~k~G~VlS 544 (725)
T KOG0110|consen 466 KADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETK-LFVKNLNFDTTLEDLEDLFSKQGTVLS 544 (725)
T ss_pred cccccccccccccccCcceecccccccccccCCccccccchhhhhccccchh-hhhhcCCcccchhHHHHHHHhcCeEEE
Confidence 00 00 0000 001233 999998888999999999998773332
Q ss_pred ceee---c----CCCCCcccccccCHHHHHHHHHHHhhccc
Q 001454 602 YMVT---D----LSCEGALLMEFRTPEEATTAMAHLRQHRK 635 (1075)
Q Consensus 602 ~~f~---d----lser~~LpVEF~s~edA~~A~~~lr~~r~ 635 (1075)
+.|. + .-+.+..||||+++|+|.+|++.|++...
T Consensus 545 ~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvl 585 (725)
T KOG0110|consen 545 IEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVL 585 (725)
T ss_pred EEEeccccccccccccceeEEEecCHHHHHHHHHHhcCcee
Confidence 2221 1 12338899999999999999999998664
No 72
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=97.85 E-value=2.3e-05 Score=78.63 Aligned_cols=65 Identities=23% Similarity=0.388 Sum_probs=58.6
Q ss_pred EEeccCCCccCHHHHHHHhhccCCcceEEEe------ccCceEEEEecCHHHHHHHHHhhcCCcee----EEEEe
Q 001454 490 LWLGSFGPEASEAHIRFQIDRFGPLEHFFFF------PIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 554 (1075)
Q Consensus 490 LWVGnL~~~vte~dL~~~F~~fG~Le~v~~~------~~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~ 554 (1075)
|+|-++-+.++|+||...|.-||+|.++-+- -.+|||+|||+...+|-.|+++|+|..+. .|+|.
T Consensus 75 i~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~ 149 (170)
T KOG0130|consen 75 IFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWC 149 (170)
T ss_pred EEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEE
Confidence 6899999999999999999999999999862 27999999999999999999999999765 66665
No 73
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=97.84 E-value=9.2e-05 Score=84.54 Aligned_cols=145 Identities=17% Similarity=0.154 Sum_probs=112.3
Q ss_pred CceEEeccCCCc-cCHHHHHHHhhccCCcceEEEec-cCceEEEEecCHHHHHHHHHhhcCCcee--EEEEe--ecC---
Q 001454 487 SKQLWLGSFGPE-ASEAHIRFQIDRFGPLEHFFFFP-IKGFALVEYINIIDAIRAREYIRNHFSW--RVKFM--DVG--- 557 (1075)
Q Consensus 487 s~~LWVGnL~~~-vte~dL~~~F~~fG~Le~v~~~~-~rgfAFVeF~~i~DAv~A~~~L~G~~~~--RI~F~--r~~--- 557 (1075)
++-|-|-||-.. ||.+-|.-+|+-||.+-.|+++. .+--|+|.|-|...|.-|++.|+|..+| +||.. +-.
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkkd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~vq 376 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKKDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTNVQ 376 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCCcceeeeecchhHHHHHHHHhhcceecCceEEEeeccCcccc
Confidence 688999999877 99999999999999999999876 6789999999999999999999999988 44444 211
Q ss_pred C-------------------------CCcccccceeccccceEEEccCCCchhHHHHHHhhhcccccCCceeecCC-CCC
Q 001454 558 L-------------------------GTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLS-CEG 611 (1075)
Q Consensus 558 ~-------------------------g~~g~~~g~~~~~s~~lwVG~iss~~~keeLf~E~~k~~~kgp~~f~dls-er~ 611 (1075)
+ |+|-+.|+ .-+|..|-..+||++++.|++..=+...+...- +|.++. ++.
T Consensus 377 lp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni--~PpsatlHlsnip~svsee~lk~~f~~~g~~vk-afkff~kd~k 453 (492)
T KOG1190|consen 377 LPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNI--FPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVK-AFKFFQKDRK 453 (492)
T ss_pred CCCCCCccccccccCCCCchhhccCccccccccc--CCchhheeeccCCcccchhHHHHhhhcCCceEE-eeeecCCCcc
Confidence 1 22222222 136888999999999999998876665432221 344444 779
Q ss_pred cccccccCHHHHHHHHHHHhhcc
Q 001454 612 ALLMEFRTPEEATTAMAHLRQHR 634 (1075)
Q Consensus 612 ~LpVEF~s~edA~~A~~~lr~~r 634 (1075)
.+++++++.|+|..|+--+..+.
T Consensus 454 mal~q~~sveeA~~ali~~hnh~ 476 (492)
T KOG1190|consen 454 MALPQLESVEEAIQALIDLHNHY 476 (492)
T ss_pred eeecccCChhHhhhhcccccccc
Confidence 99999999999999977665544
No 74
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.65 E-value=6.7e-06 Score=85.70 Aligned_cols=66 Identities=20% Similarity=0.323 Sum_probs=60.4
Q ss_pred cccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhcCCcee
Q 001454 484 FSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW 549 (1075)
Q Consensus 484 ~~~s~~LWVGnL~~~vte~dL~~~F~~fG~Le~v~~~~------~rgfAFVeF~~i~DAv~A~~~L~G~~~~ 549 (1075)
.+-|--+|||+|+-+.||.||-.+|+.||.|.+|-+.| ++||||.-|+|-+--|-|++.|+|-.+.
T Consensus 32 YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~ 103 (219)
T KOG0126|consen 32 YKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKIL 103 (219)
T ss_pred cccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceec
Confidence 44566799999999999999999999999999999865 7899999999999999999999999875
No 75
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=97.59 E-value=0.00046 Score=81.20 Aligned_cols=145 Identities=19% Similarity=0.229 Sum_probs=111.9
Q ss_pred cCceEEeccCCCccCHHHHHHHhhccCCcceEEEec-----cCceEEEEecCHHHHHHHHHhhcCCcee----EEEEeec
Q 001454 486 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP-----IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDV 556 (1075)
Q Consensus 486 ~s~~LWVGnL~~~vte~dL~~~F~~fG~Le~v~~~~-----~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~r~ 556 (1075)
+-=.|.|-||+=...+.||.-+|++||.+..|.+-+ =+|||||.|.+.-||..|++.|+|+.+. -|+|+=.
T Consensus 116 ~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~ 195 (678)
T KOG0127|consen 116 PKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVD 195 (678)
T ss_pred ccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecc
Confidence 355799999999999999999999999999999842 3599999999999999999999999775 4666511
Q ss_pred C-----------------------------CC-----------------Ccc----cc-----------------cceec
Q 001454 557 G-----------------------------LG-----------------TKG----VI-----------------NGVAV 569 (1075)
Q Consensus 557 ~-----------------------------~g-----------------~~g----~~-----------------~g~~~ 569 (1075)
. .| +.| +- .|...
T Consensus 196 Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~ 275 (678)
T KOG0127|consen 196 KDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKE 275 (678)
T ss_pred cccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhccccccccccccccccccccCc
Confidence 0 01 011 00 00000
Q ss_pred --------------cccceEEEccCCCchhHHHHHHhhhcccccCCcee-ec---CCCCCcccccccCHHHHHHHHHHH
Q 001454 570 --------------GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TD---LSCEGALLMEFRTPEEATTAMAHL 630 (1075)
Q Consensus 570 --------------~~s~~lwVG~iss~~~keeLf~E~~k~~~kgp~~f-~d---lser~~LpVEF~s~edA~~A~~~l 630 (1075)
+.-+.|+|-|+|=..++|||-.++.+||.+.-..+ ++ ...++++||-|.+.++|.+++...
T Consensus 276 ~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~A 354 (678)
T KOG0127|consen 276 SDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAA 354 (678)
T ss_pred ccchhccccccccccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhc
Confidence 11378999999999999999999999885553322 22 678899999999999999998874
No 76
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=97.58 E-value=0.00016 Score=85.29 Aligned_cols=76 Identities=24% Similarity=0.346 Sum_probs=70.7
Q ss_pred ecCCcccccccccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhcCCc
Q 001454 474 FDEDPAAMDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHF 547 (1075)
Q Consensus 474 ~~g~~~a~dv~~~s~~LWVGnL~~~vte~dL~~~F~~fG~Le~v~~~~------~rgfAFVeF~~i~DAv~A~~~L~G~~ 547 (1075)
++..+++-+|---.++++||+|+...+++.++++.+-||+|..|.++. ++||||-||.+.-..-.|+..|+|..
T Consensus 276 ~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~ 355 (500)
T KOG0120|consen 276 VGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQ 355 (500)
T ss_pred cCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhh
Confidence 488888888888899999999999999999999999999999999753 68999999999999999999999998
Q ss_pred ee
Q 001454 548 SW 549 (1075)
Q Consensus 548 ~~ 549 (1075)
++
T Consensus 356 lg 357 (500)
T KOG0120|consen 356 LG 357 (500)
T ss_pred hc
Confidence 77
No 77
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=97.58 E-value=6.3e-05 Score=88.25 Aligned_cols=145 Identities=14% Similarity=0.124 Sum_probs=108.7
Q ss_pred CceEEeccCCCccCHHHHHHHhhccCCcceEEEe------ccCceEEEEecCHHHHHHHHHhhcCCceeEEEEee--cC-
Q 001454 487 SKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF------PIKGFALVEYINIIDAIRAREYIRNHFSWRVKFMD--VG- 557 (1075)
Q Consensus 487 s~~LWVGnL~~~vte~dL~~~F~~fG~Le~v~~~------~~rgfAFVeF~~i~DAv~A~~~L~G~~~~RI~F~r--~~- 557 (1075)
.+.+++=-|...+++-||++.|+.+|++++|.+. +.+|-|||||-|.+--..|+ +|.|+++.-+..+. +.
T Consensus 179 ~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~ai-aLsGqrllg~pv~vq~sEa 257 (549)
T KOG0147|consen 179 QRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAI-ALSGQRLLGVPVIVQLSEA 257 (549)
T ss_pred HHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHh-hhcCCcccCceeEecccHH
Confidence 3556666778889999999999999999999974 48999999999876655565 99999876333321 10
Q ss_pred ----CC-Cccccc-ceeccccceEEEccCCCchhHHHHHHhhhcccccCCcee-ec---CCCCCcccccccCHHHHHHHH
Q 001454 558 ----LG-TKGVIN-GVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TD---LSCEGALLMEFRTPEEATTAM 627 (1075)
Q Consensus 558 ----~g-~~g~~~-g~~~~~s~~lwVG~iss~~~keeLf~E~~k~~~kgp~~f-~d---lser~~LpVEF~s~edA~~A~ 627 (1075)
.- +--.+. |-.+++-..||||++......+.+..=+..|+.++-+.. .| ...++.-+|+|.+.|+|..|+
T Consensus 258 eknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~ 337 (549)
T KOG0147|consen 258 EKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKAL 337 (549)
T ss_pred HHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHH
Confidence 00 000011 111234333999999999999999999998887776633 33 678999999999999999999
Q ss_pred HHHhh
Q 001454 628 AHLRQ 632 (1075)
Q Consensus 628 ~~lr~ 632 (1075)
..|++
T Consensus 338 e~lng 342 (549)
T KOG0147|consen 338 EQLNG 342 (549)
T ss_pred HHhcc
Confidence 99998
No 78
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=97.57 E-value=5.4e-05 Score=88.79 Aligned_cols=60 Identities=25% Similarity=0.455 Sum_probs=55.2
Q ss_pred CceEEeccCCCccCHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhcCC
Q 001454 487 SKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNH 546 (1075)
Q Consensus 487 s~~LWVGnL~~~vte~dL~~~F~~fG~Le~v~~~~------~rgfAFVeF~~i~DAv~A~~~L~G~ 546 (1075)
-+.||||||-.+.+|++|+..|+.||+|+.|-.-. .+||+|++|.+.+||+.|.+.|+|.
T Consensus 278 ~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngf 343 (549)
T KOG0147|consen 278 MRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGF 343 (549)
T ss_pred hhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccc
Confidence 33499999999999999999999999999998743 6999999999999999999999995
No 79
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=97.43 E-value=9.3e-05 Score=79.34 Aligned_cols=65 Identities=15% Similarity=0.283 Sum_probs=57.5
Q ss_pred cccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec--cCceEEEEecCHHHHHHHHHhhcCCce
Q 001454 484 FSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP--IKGFALVEYINIIDAIRAREYIRNHFS 548 (1075)
Q Consensus 484 ~~~s~~LWVGnL~~~vte~dL~~~F~~fG~Le~v~~~~--~rgfAFVeF~~i~DAv~A~~~L~G~~~ 548 (1075)
..+|-+|||.||+++++|++|+.+|.+|--..-+++.. +---|||+|++|+.|-+|+..|||..+
T Consensus 207 ~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~~g~~vaf~~~~~~~~at~am~~lqg~~~ 273 (284)
T KOG1457|consen 207 ARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRARGGMPVAFADFEEIEQATDAMNHLQGNLL 273 (284)
T ss_pred chhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecCCCcceEeecHHHHHHHHHHHHHhhccee
Confidence 46789999999999999999999999998877777643 444799999999999999999999865
No 80
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=97.38 E-value=0.0003 Score=74.78 Aligned_cols=70 Identities=21% Similarity=0.224 Sum_probs=61.2
Q ss_pred CceEEeccCCCccCHHHHHHHhhcc-CCcceEEEec------cCceEEEEecCHHHHHHHHHhhcCCcee----EEEEee
Q 001454 487 SKQLWLGSFGPEASEAHIRFQIDRF-GPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMD 555 (1075)
Q Consensus 487 s~~LWVGnL~~~vte~dL~~~F~~f-G~Le~v~~~~------~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~r 555 (1075)
..-+||+.++.+.-|.++...|..| |.+..|+..| +||||||||++.+.|.-|-+.|++=.+. ...||-
T Consensus 49 ~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vmp 128 (214)
T KOG4208|consen 49 EGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVMP 128 (214)
T ss_pred ccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEeC
Confidence 4457999999999999999999999 8999998854 7899999999999999999999987654 667775
Q ss_pred c
Q 001454 556 V 556 (1075)
Q Consensus 556 ~ 556 (1075)
+
T Consensus 129 p 129 (214)
T KOG4208|consen 129 P 129 (214)
T ss_pred c
Confidence 5
No 81
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=97.36 E-value=0.00048 Score=78.18 Aligned_cols=140 Identities=17% Similarity=0.126 Sum_probs=98.2
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhcCCcee--------------E
Q 001454 485 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW--------------R 550 (1075)
Q Consensus 485 ~~s~~LWVGnL~~~vte~dL~~~F~~fG~Le~v~~~~~rgfAFVeF~~i~DAv~A~~~L~G~~~~--------------R 550 (1075)
.+|--+-|-+|-.+|+|+||.+..+.||+|--|+.-+-+--|+|||+||+-|+.++..---..+. +
T Consensus 29 ~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~~r~alvefedi~~akn~Vnfaa~n~i~i~gq~Al~NyStsq~ 108 (494)
T KOG1456|consen 29 NPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPHKRQALVEFEDIEGAKNCVNFAADNQIYIAGQQALFNYSTSQC 108 (494)
T ss_pred CCCceEEEeccccccchhHHHHHHhcCCceEEEEeccccceeeeeeccccchhhheehhccCcccccCchhhcccchhhh
Confidence 44556889999999999999999999999999999998889999999999999988754433322 3
Q ss_pred EEEeecCCCCcccccceeccccceEEEccCCCc-hhHHHHHHh-hhcccccCCceeecCCCCCcccccccCHHHHHHHHH
Q 001454 551 VKFMDVGLGTKGVINGVAVGSCFHVYVGNIPNQ-WAKDEILHE-SYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMA 628 (1075)
Q Consensus 551 I~F~r~~~g~~g~~~g~~~~~s~~lwVG~iss~-~~keeLf~E-~~k~~~kgp~~f~dlser~~LpVEF~s~edA~~A~~ 628 (1075)
|+ |++.-+ .+++++|.+-=+-++ -+.-++++- ....++.-.+.+ .-..-=-+.|||+|++-|++|++
T Consensus 109 i~--R~g~es--------~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvI-fkkngVQAmVEFdsv~~AqrAk~ 177 (494)
T KOG1456|consen 109 IE--RPGDES--------ATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVI-FKKNGVQAMVEFDSVEVAQRAKA 177 (494)
T ss_pred hc--cCCCCC--------CCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEE-EeccceeeEEeechhHHHHHHHh
Confidence 33 221112 346888887766665 233344443 333332222211 11122347899999999999999
Q ss_pred HHhhccc
Q 001454 629 HLRQHRK 635 (1075)
Q Consensus 629 ~lr~~r~ 635 (1075)
.|++.+.
T Consensus 178 alNGADI 184 (494)
T KOG1456|consen 178 ALNGADI 184 (494)
T ss_pred hcccccc
Confidence 9999885
No 82
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=97.30 E-value=0.00031 Score=73.62 Aligned_cols=68 Identities=21% Similarity=0.326 Sum_probs=59.1
Q ss_pred CceEEeccCCCccCHHHHHHHhhccCCcceE---EE----eccCceEEEEecCHHHHHHHHHhhcCCcee----EEEEe
Q 001454 487 SKQLWLGSFGPEASEAHIRFQIDRFGPLEHF---FF----FPIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 554 (1075)
Q Consensus 487 s~~LWVGnL~~~vte~dL~~~F~~fG~Le~v---~~----~~~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~ 554 (1075)
+-+|+||||.+.+.|.-|-..|+.||.|-+- .- -.++|||||+|++.+-|.+|++.|+|+.++ ++.++
T Consensus 96 ganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya 174 (203)
T KOG0131|consen 96 GANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSYA 174 (203)
T ss_pred cccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEEE
Confidence 3689999999999999999999999999762 11 137899999999999999999999999887 56665
No 83
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.20 E-value=0.00053 Score=77.44 Aligned_cols=84 Identities=18% Similarity=0.243 Sum_probs=71.8
Q ss_pred eeeecCCcccccccccCceEEeccCCCccCHHHHHHHhhccCCcceEEEecc------CceEEEEecCHHHHHHHHHhhc
Q 001454 471 VWYFDEDPAAMDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPI------KGFALVEYINIIDAIRAREYIR 544 (1075)
Q Consensus 471 ~~~~~g~~~a~dv~~~s~~LWVGnL~~~vte~dL~~~F~~fG~Le~v~~~~~------rgfAFVeF~~i~DAv~A~~~L~ 544 (1075)
+.-.=||----||.+|-+-|||-.|-|-++.+||+-.|++||+|.+--+.+. --||||||++-++.++|.=-|+
T Consensus 223 iLEmvGDlpdAd~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMd 302 (479)
T KOG0415|consen 223 ILEMVGDLPDADVKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMD 302 (479)
T ss_pred HHHHhcCCcccccCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhc
Confidence 3445577777799999999999999999999999999999999998877654 4699999999999999999999
Q ss_pred CCcee--E--EEEe
Q 001454 545 NHFSW--R--VKFM 554 (1075)
Q Consensus 545 G~~~~--R--I~F~ 554 (1075)
.-.+- | |+|.
T Consensus 303 NvLIDDrRIHVDFS 316 (479)
T KOG0415|consen 303 NVLIDDRRIHVDFS 316 (479)
T ss_pred ceeeccceEEeehh
Confidence 76653 4 4554
No 84
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=97.09 E-value=0.00052 Score=57.79 Aligned_cols=60 Identities=23% Similarity=0.355 Sum_probs=51.2
Q ss_pred EEEccCCCchhHHHHHHhhhcccccCCcee-e--cCCCCCcccccccCHHHHHHHHHHHhhcc
Q 001454 575 VYVGNIPNQWAKDEILHESYKVVYKGPYMV-T--DLSCEGALLMEFRTPEEATTAMAHLRQHR 634 (1075)
Q Consensus 575 lwVG~iss~~~keeLf~E~~k~~~kgp~~f-~--dlser~~LpVEF~s~edA~~A~~~lr~~r 634 (1075)
||||+++...+++||..-+..++....+.+ . ....++.++|+|++.+||..|+..|++..
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~ 63 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKK 63 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCE
Confidence 799999999999999999998887655543 2 25568899999999999999999998854
No 85
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=97.06 E-value=0.00055 Score=79.68 Aligned_cols=58 Identities=22% Similarity=0.289 Sum_probs=50.1
Q ss_pred cCceEEeccCCCccCHHHHHHHhhccCCcceEEEec----cC--ceEEEEecCHHHHHHHHHhh
Q 001454 486 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP----IK--GFALVEYINIIDAIRAREYI 543 (1075)
Q Consensus 486 ~s~~LWVGnL~~~vte~dL~~~F~~fG~Le~v~~~~----~r--gfAFVeF~~i~DAv~A~~~L 543 (1075)
....+||+||+.++++++|++.|..||+|+...|.. .+ .||||+|++-..+..|+++=
T Consensus 287 ~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~As 350 (419)
T KOG0116|consen 287 DGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEAS 350 (419)
T ss_pred cccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcC
Confidence 334499999999999999999999999999887753 22 89999999999999888764
No 86
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=97.05 E-value=0.053 Score=66.74 Aligned_cols=61 Identities=13% Similarity=0.193 Sum_probs=49.0
Q ss_pred cccceEEEccCCCchhHHHHHHhhhcccccCCceeecCCCCCcccccccCHHHHHHHHHHHhh
Q 001454 570 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQ 632 (1075)
Q Consensus 570 ~~s~~lwVG~iss~~~keeLf~E~~k~~~kgp~~f~dlser~~LpVEF~s~edA~~A~~~lr~ 632 (1075)
..|+.||||+|+-.+...+|-+=++.|+.+.-+ .-+..+..+||=-+.-.||..||-.|+.
T Consensus 419 V~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi--~li~~R~cAfI~M~~RqdA~kalqkl~n 479 (894)
T KOG0132|consen 419 VCSRTLWVGGIPKNVTEQDLANLFEEFGEIQSI--ILIPPRGCAFIKMVRRQDAEKALQKLSN 479 (894)
T ss_pred EeeeeeeeccccchhhHHHHHHHHHhcccceeE--eeccCCceeEEEEeehhHHHHHHHHHhc
Confidence 369999999999998888887777765544433 3466789999999888999999888884
No 87
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=96.90 E-value=0.00087 Score=72.63 Aligned_cols=62 Identities=18% Similarity=0.240 Sum_probs=55.9
Q ss_pred CceEEeccCCCccCHHHHHHHhhccCCcceEEEe------ccCceEEEEecCHHHHHHHHHhhcCCcee
Q 001454 487 SKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF------PIKGFALVEYINIIDAIRAREYIRNHFSW 549 (1075)
Q Consensus 487 s~~LWVGnL~~~vte~dL~~~F~~fG~Le~v~~~------~~rgfAFVeF~~i~DAv~A~~~L~G~~~~ 549 (1075)
.+.+||||+.-.+|.++++..|+-||.|..|.+- .++|||||+|.+.+.++.|++ |+|..+.
T Consensus 101 ~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~ 168 (231)
T KOG4209|consen 101 APSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIP 168 (231)
T ss_pred CceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccc
Confidence 5789999999999999999999999999866652 379999999999999999999 9999654
No 88
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=96.87 E-value=0.0014 Score=56.38 Aligned_cols=58 Identities=19% Similarity=0.271 Sum_probs=46.7
Q ss_pred EEEccCCCchhHHHHHHhhhcccccCCceeec---CCCCCcccccccCHHHHHHHHHHHhh
Q 001454 575 VYVGNIPNQWAKDEILHESYKVVYKGPYMVTD---LSCEGALLMEFRTPEEATTAMAHLRQ 632 (1075)
Q Consensus 575 lwVG~iss~~~keeLf~E~~k~~~kgp~~f~d---lser~~LpVEF~s~edA~~A~~~lr~ 632 (1075)
|||+|||+..++++|.+.+..++....+.+.- ...++.++|||.+.++|.+|+..+.+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~ 61 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNG 61 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCC
Confidence 79999999999999999999987665554422 23479999999999999999998764
No 89
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=96.83 E-value=0.0017 Score=65.41 Aligned_cols=66 Identities=12% Similarity=0.068 Sum_probs=55.1
Q ss_pred ccccceEEEccCCCchhHHHHHHhhhcccccCCcee-ec---CCCCCcccccccCHHHHHHHHHHHhhcc
Q 001454 569 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TD---LSCEGALLMEFRTPEEATTAMAHLRQHR 634 (1075)
Q Consensus 569 ~~~s~~lwVG~iss~~~keeLf~E~~k~~~kgp~~f-~d---lser~~LpVEF~s~edA~~A~~~lr~~r 634 (1075)
--.++.||||+++...++++|..-+.+++.+..+.+ .+ ...++.++|||++.|+|..|++.|+++.
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~ 100 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKE 100 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCE
Confidence 346889999999999999999999998876665544 33 3468899999999999999999987754
No 90
>PF07744 SPOC: SPOC domain; InterPro: IPR012921 Spen (split end) proteins regulate the expression of key transcriptional effectors in diverse signalling pathways. They are large proteins characterised by N-terminal RNA-binding motifs and a highly conserved C-terminal SPOC (Spen paralog and ortholog C-terminal) domain. The function of the SPOC domain is unknown, but the SPOC domain of the SHARP Spen protein has been implicated in the interaction of SHARP with the SMRT/NcoR corepressor, where SHARP plays an essential role in the repressor complex []. The SPOC domain is folded into a single compact domain consisting of a beta-barrel with seven strands framed by six alpha helices. A number of deep grooves and clefts in the surface, plus two nonpolar loops, render the SPOC domain well suited to protein-protein interactions; most of the conserved residues occur on the protein surface rather than in the core. Other proteins containing a SPOC domain include drosophila Split ends, which promotes sclerite development in the head and restricts it in the thorax, and mouse MINT (homologue of SHARP), which is involved in skeletal and neuronal development via its repression of Msx2.; PDB: 1OW1_A.
Probab=96.82 E-value=2.7e-05 Score=73.99 Aligned_cols=100 Identities=25% Similarity=0.423 Sum_probs=67.7
Q ss_pred eecceeccCcccceeeeecccccccccc-cCCCCCCCCcccccCCCccccccccccccc-CCCCCccccccCC-----CC
Q 001454 930 WQGALCKSGVHYCTIYAQREESDICKYT-HDISEPAEWPAKLDMTKRTDFRHVKSTFTS-TPPNKREVCRLVP-----SS 1002 (1075)
Q Consensus 930 WqGsL~kSg~~yCtil~s~idsdICkat-~aisePs~WP~~lD~TnRTDFd~VeslFa~-tPP~kREVcrLvP-----~s 1002 (1075)
|+|.+...+++.|.+.++-+.-+ +... +.+.+...||..++..-|.+.+.+...... ..+..+++|.+.. ..
T Consensus 1 W~G~i~m~~~~~f~~~a~~v~G~-~~~~~~~l~~~~~~p~~i~i~gRl~~~~~~~yl~~i~~s~~~~v~v~~~~~~~~~~ 79 (119)
T PF07744_consen 1 WQGTISMKSVASFSARAHFVSGN-CDLLDNVLPWQQLPPKKIDIRGRLDPEKVWDYLRQIRKSRSKDVCVVALSSPESDS 79 (119)
T ss_dssp EEEEEEETT-EEEEEEEEEEEE--HHHHHHHS-------EEE-EEEE-SHHHHHHHHHHTSSTTT-EEEEEEE-SSHHHH
T ss_pred CceEEEcCCCCeEEEEEEEEEcc-hhHhhhhcccccCCCcEEEEEeecCHHHHHHHHHhcccCCCceEEEEEEcCCcccC
Confidence 99999999999999999877444 5554 677777899999999999998887766655 3334568887755 23
Q ss_pred CCCccchhcHHHHHhhccccceEeecch
Q 001454 1003 PGDHKGFQDFVSYLKQRECAGVIKIPAV 1030 (1075)
Q Consensus 1003 ~~D~K~fqdFiifL~Q~~cagviKl~~v 1030 (1075)
..+...|++|+.||.+++++||+++...
T Consensus 80 ~~~~~~~~~l~~Yl~~k~r~GVv~~~~~ 107 (119)
T PF07744_consen 80 NSDRRPFQKLVDYLKSKQRAGVVSVGNS 107 (119)
T ss_dssp HHHHHHHHHTHHHHHHHTEEEEEEE--T
T ss_pred HHHHHHHHHHHHHHhhCCEEEEEecCCC
Confidence 4455779999999999999999999863
No 91
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=96.82 E-value=0.0011 Score=81.58 Aligned_cols=74 Identities=22% Similarity=0.291 Sum_probs=69.4
Q ss_pred ccccCceEEeccCCCccCHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhcCCcee------EEEEeec
Q 001454 483 IFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW------RVKFMDV 556 (1075)
Q Consensus 483 v~~~s~~LWVGnL~~~vte~dL~~~F~~fG~Le~v~~~~~rgfAFVeF~~i~DAv~A~~~L~G~~~~------RI~F~r~ 556 (1075)
-.+++..||||.|++-..-.-|..+|.+||+|+.+.......||+|.|++..-|..|++.|.|..++ ||.|+..
T Consensus 451 kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hgq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdla~~ 530 (975)
T KOG0112|consen 451 KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHGQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDLASP 530 (975)
T ss_pred ccccceeeccCCCCCCChHHHHHHHhhccCcceeeecccCCcceeeecccCccchhhHHHHhcCcCCCCCcccccccccC
Confidence 5678999999999999999999999999999999999889999999999999999999999999876 7888855
No 92
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=96.80 E-value=0.007 Score=70.17 Aligned_cols=153 Identities=16% Similarity=0.171 Sum_probs=110.2
Q ss_pred cCCcccccccccCceEEeccCCCccCHHHHHHHhh-ccCCcceEEEe-----ccCceEEEEecCHHHHHHHHHhhcCCce
Q 001454 475 DEDPAAMDIFSASKQLWLGSFGPEASEAHIRFQID-RFGPLEHFFFF-----PIKGFALVEYINIIDAIRAREYIRNHFS 548 (1075)
Q Consensus 475 ~g~~~a~dv~~~s~~LWVGnL~~~vte~dL~~~F~-~fG~Le~v~~~-----~~rgfAFVeF~~i~DAv~A~~~L~G~~~ 548 (1075)
+|.++|.| |.+||-||+-++.=.||..+|. +-|.|+-|-++ .+||+|.|||++.|-+..|++-|+-..+
T Consensus 37 ~gn~~~r~-----R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~ 111 (608)
T KOG4212|consen 37 GGNVAARD-----RSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEV 111 (608)
T ss_pred CCCccccc-----ceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccc
Confidence 55555555 6799999999999999999995 67899877754 3899999999999999999999885543
Q ss_pred e-------------EEEEeecC-CCCccc------------------ccceec---------------------------
Q 001454 549 W-------------RVKFMDVG-LGTKGV------------------INGVAV--------------------------- 569 (1075)
Q Consensus 549 ~-------------RI~F~r~~-~g~~g~------------------~~g~~~--------------------------- 569 (1075)
- |-+++|.. +|..++ +.|+-+
T Consensus 112 ~GR~l~vKEd~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~ 191 (608)
T KOG4212|consen 112 NGRELVVKEDHDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNS 191 (608)
T ss_pred cCceEEEeccCchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccc
Confidence 2 22222221 111111 111111
Q ss_pred ---------------------cccceEEEccCCCchhHHHHHHhhhcccccCCcee---ecCCCCCcccccccCHHHHHH
Q 001454 570 ---------------------GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV---TDLSCEGALLMEFRTPEEATT 625 (1075)
Q Consensus 570 ---------------------~~s~~lwVG~iss~~~keeLf~E~~k~~~kgp~~f---~dlser~~LpVEF~s~edA~~ 625 (1075)
--+..++|+++-=.+--+.|..=+.-+++..-+.| +..-+++...+||+.+.+|-+
T Consensus 192 ~~~~lfgl~~~Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKeG~s~G~~vi~y~hpveavq 271 (608)
T KOG4212|consen 192 SNYNLFGLSASFLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKEGNSRGFAVIEYDHPVEAVQ 271 (608)
T ss_pred hhhhcccchhhhhhhccCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeeccccccCCeeEEEecchHHHHH
Confidence 01567789998888887777777777777665555 336778899999999999999
Q ss_pred HHHHHhh
Q 001454 626 AMAHLRQ 632 (1075)
Q Consensus 626 A~~~lr~ 632 (1075)
|+.-|.+
T Consensus 272 aIsml~~ 278 (608)
T KOG4212|consen 272 AISMLDR 278 (608)
T ss_pred HHHhhcc
Confidence 9888775
No 93
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=96.79 E-value=0.024 Score=66.92 Aligned_cols=46 Identities=13% Similarity=0.172 Sum_probs=38.1
Q ss_pred HHHHHHHhhccCCcceEEEec-cCceEEEEecCHHHHHHHHHhhcCC
Q 001454 501 EAHIRFQIDRFGPLEHFFFFP-IKGFALVEYINIIDAIRAREYIRNH 546 (1075)
Q Consensus 501 e~dL~~~F~~fG~Le~v~~~~-~rgfAFVeF~~i~DAv~A~~~L~G~ 546 (1075)
|.||-..|+++-+=.-|..|- +.++|=.+|.+++||..=++.++-+
T Consensus 92 dqELY~nf~y~q~r~ffhtFegddc~aGLnF~~E~EA~~F~k~V~~r 138 (569)
T KOG3671|consen 92 DQELYQNFEYRQPRTFFHTFEGDDCQAGLNFASEEEAQKFRKKVQDR 138 (569)
T ss_pred hHHhhhhceeccCccceeeeccccceeeecccCHHHHHHHHHHHHHH
Confidence 889999999999765555555 8899999999999999888877744
No 94
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=96.78 E-value=0.0015 Score=71.43 Aligned_cols=64 Identities=16% Similarity=0.287 Sum_probs=54.8
Q ss_pred cCceEEeccCCCccCHHHHHHHhhccCCcc------eEEEeccCceEEEEecCHHHHHHHHHhhcCCcee
Q 001454 486 ASKQLWLGSFGPEASEAHIRFQIDRFGPLE------HFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW 549 (1075)
Q Consensus 486 ~s~~LWVGnL~~~vte~dL~~~F~~fG~Le------~v~~~~~rgfAFVeF~~i~DAv~A~~~L~G~~~~ 549 (1075)
-.=.++-|.||++|+.+.|...|.||=.-- +=+.-..+||.||-|+++.|+++|++.|+|+-++
T Consensus 189 ~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVg 258 (290)
T KOG0226|consen 189 DDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVG 258 (290)
T ss_pred ccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccc
Confidence 345789999999999999999999996543 3333458999999999999999999999999776
No 95
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=96.70 E-value=0.0015 Score=68.27 Aligned_cols=63 Identities=24% Similarity=0.230 Sum_probs=54.2
Q ss_pred cceEEEccCCCchhHHHHHHhhhcccccCCceeecCCCCCcccccccCHHHHHHHHHHHhhccc
Q 001454 572 CFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHRK 635 (1075)
Q Consensus 572 s~~lwVG~iss~~~keeLf~E~~k~~~kgp~~f~dlser~~LpVEF~s~edA~~A~~~lr~~r~ 635 (1075)
.+.||||+.++...|.||+.+|.+++.+-.+= +.....+.+||||+.+.||.-|..+|.+++.
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvW-vArnPPGfAFVEFed~RDA~DAvr~LDG~~~ 72 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVW-VARNPPGFAFVEFEDPRDAEDAVRYLDGKDI 72 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEE-EeecCCCceEEeccCcccHHHHHhhcCCccc
Confidence 67899999999999999999999877444432 3457889999999999999999999999874
No 96
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=96.61 E-value=0.0028 Score=72.91 Aligned_cols=76 Identities=29% Similarity=0.406 Sum_probs=67.9
Q ss_pred ccccccCceEEeccCCCccCHHHHHHHhhccCCc-ceEEEec-cCceEEEEecCHHHHHHHHHhhcCCcee-----EEEE
Q 001454 481 MDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPL-EHFFFFP-IKGFALVEYINIIDAIRAREYIRNHFSW-----RVKF 553 (1075)
Q Consensus 481 ~dv~~~s~~LWVGnL~~~vte~dL~~~F~~fG~L-e~v~~~~-~rgfAFVeF~~i~DAv~A~~~L~G~~~~-----RI~F 553 (1075)
..++++|.+|-+.||+++++|+||+..|..-|-. ..|.|+. +|.+|++.++++|+|++|.-+|..+.++ ||-|
T Consensus 408 ~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff~kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSF 487 (492)
T KOG1190|consen 408 QNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQKDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSF 487 (492)
T ss_pred cccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeeecCCCcceeecccCChhHhhhhccccccccCCCCceEEEEe
Confidence 4588999999999999999999999999999877 6788888 9999999999999999999999777654 8888
Q ss_pred eec
Q 001454 554 MDV 556 (1075)
Q Consensus 554 ~r~ 556 (1075)
..+
T Consensus 488 Sks 490 (492)
T KOG1190|consen 488 SKS 490 (492)
T ss_pred ecc
Confidence 754
No 97
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=96.41 E-value=0.025 Score=64.38 Aligned_cols=149 Identities=15% Similarity=0.139 Sum_probs=113.2
Q ss_pred cCceEEeccCCCccCHHHHHHHhhccCCcc--------eEEEec-----cCceEEEEecCHHHHHHHHHhhcCCcee---
Q 001454 486 ASKQLWLGSFGPEASEAHIRFQIDRFGPLE--------HFFFFP-----IKGFALVEYINIIDAIRAREYIRNHFSW--- 549 (1075)
Q Consensus 486 ~s~~LWVGnL~~~vte~dL~~~F~~fG~Le--------~v~~~~-----~rgfAFVeF~~i~DAv~A~~~L~G~~~~--- 549 (1075)
...++||-+|+.++|-+|+.++|++||=|- .+.+|+ -+|=|++-|-..+--.-|++.|+|.-+.
T Consensus 133 ~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~ 212 (382)
T KOG1548|consen 133 VNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGKK 212 (382)
T ss_pred cCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCcE
Confidence 355799999999999999999999999874 256775 5789999999999999999999999765
Q ss_pred -EEEEeecCCCCccc-----------------------------ccceeccccceEEEccCCCc-----------hhHHH
Q 001454 550 -RVKFMDVGLGTKGV-----------------------------INGVAVGSCFHVYVGNIPNQ-----------WAKDE 588 (1075)
Q Consensus 550 -RI~F~r~~~g~~g~-----------------------------~~g~~~~~s~~lwVG~iss~-----------~~kee 588 (1075)
||+.|.-+..-... -....++..+.|-+-|+=.. -.+|+
T Consensus 213 ~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlked 292 (382)
T KOG1548|consen 213 LRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDLKED 292 (382)
T ss_pred EEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHHHHHH
Confidence 44444222100000 11222335667777776542 34778
Q ss_pred HHHhhhcccccCCceeecCCCCCcccccccCHHHHHHHHHHHhhcc
Q 001454 589 ILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHR 634 (1075)
Q Consensus 589 Lf~E~~k~~~kgp~~f~dlser~~LpVEF~s~edA~~A~~~lr~~r 634 (1075)
|..|..++|.+.-+.+-+-...+.+.|=|.+.++|..+...|.++=
T Consensus 293 l~eec~K~G~v~~vvv~d~hPdGvvtV~f~n~eeA~~ciq~m~GR~ 338 (382)
T KOG1548|consen 293 LTEECEKFGQVRKVVVYDRHPDGVVTVSFRNNEEADQCIQTMDGRW 338 (382)
T ss_pred HHHHHHHhCCcceEEEeccCCCceeEEEeCChHHHHHHHHHhcCee
Confidence 8888888888877777777888999999999999999999999854
No 98
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=96.35 E-value=0.0055 Score=67.11 Aligned_cols=60 Identities=18% Similarity=0.119 Sum_probs=54.8
Q ss_pred ceEEeccCCCccCHHHHHHHhhccCCcceEEEec-----cCceEEEEecCHHHHHHHHHhhcCCc
Q 001454 488 KQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP-----IKGFALVEYINIIDAIRAREYIRNHF 547 (1075)
Q Consensus 488 ~~LWVGnL~~~vte~dL~~~F~~fG~Le~v~~~~-----~rgfAFVeF~~i~DAv~A~~~L~G~~ 547 (1075)
-.|+|.||...|+++||+++|+.||.+..+.+.. +.|.|-|.|.+-+||++|++-++|-.
T Consensus 84 ~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ 148 (243)
T KOG0533|consen 84 TKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVA 148 (243)
T ss_pred ceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcc
Confidence 5699999999999999999999999999998842 56999999999999999999999943
No 99
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=96.33 E-value=0.0049 Score=67.89 Aligned_cols=70 Identities=20% Similarity=0.172 Sum_probs=62.7
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhcCCcee--EEEEe
Q 001454 485 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW--RVKFM 554 (1075)
Q Consensus 485 ~~s~~LWVGnL~~~vte~dL~~~F~~fG~Le~v~~~~------~rgfAFVeF~~i~DAv~A~~~L~G~~~~--RI~F~ 554 (1075)
...|||||=.|+..-.+.||-..|..||-|.+-++|- +|-|.||-|.|+.-|-.|+.+|+|..++ |+++.
T Consensus 283 PeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQ 360 (371)
T KOG0146|consen 283 PEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQ 360 (371)
T ss_pred CCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhh
Confidence 3589999999999999999999999999999888752 7789999999999999999999999887 55543
No 100
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=96.26 E-value=0.041 Score=64.89 Aligned_cols=137 Identities=18% Similarity=0.145 Sum_probs=97.2
Q ss_pred ceEEeccCCCccCHHHHHHHhhccCCcceEEEec----cCceEEEEecCHHHHHHHHH---hhcCCceeEE--------E
Q 001454 488 KQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP----IKGFALVEYINIIDAIRARE---YIRNHFSWRV--------K 552 (1075)
Q Consensus 488 ~~LWVGnL~~~vte~dL~~~F~~fG~Le~v~~~~----~rgfAFVeF~~i~DAv~A~~---~L~G~~~~RI--------~ 552 (1075)
..+=+-.|+=++|++||+..|+-++ |++|.+.+ ..|=|||||.+.+|+..|++ ...|++-..| +
T Consensus 11 ~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~~Gr~sGeA~Ve~~seedv~~AlkkdR~~mg~RYIEVf~~~~~e~d 89 (510)
T KOG4211|consen 11 FEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRRNGRPSGEAYVEFTSEEDVEKALKKDRESMGHRYIEVFTAGGAEAD 89 (510)
T ss_pred eEEEecCCCccccHHHHHHHHhcCc-eeEEEEeccCCCcCcceEEEeechHHHHHHHHhhHHHhCCceEEEEccCCcccc
Confidence 3455678999999999999999986 88888865 68999999999999999986 4455543311 2
Q ss_pred E-eecCCCCcccccceeccccceEEEccCCCchhHHHHHHhhhcccccCC--cee--ecCCCCCcccccccCHHHHHHHH
Q 001454 553 F-MDVGLGTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGP--YMV--TDLSCEGALLMEFRTPEEATTAM 627 (1075)
Q Consensus 553 F-~r~~~g~~g~~~g~~~~~s~~lwVG~iss~~~keeLf~E~~k~~~kgp--~~f--~dlser~~LpVEF~s~edA~~A~ 627 (1075)
+ +|+ .|-++ ....-+|-.=++|=..+++||+.-+--.-.+.. +.. .-....+.++|.|+++|.|..||
T Consensus 90 ~~~~~-~g~~s------~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al 162 (510)
T KOG4211|consen 90 WVMRP-GGPNS------SANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIAL 162 (510)
T ss_pred ccccC-CCCCC------CCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHH
Confidence 1 122 12111 123456778888989999999877765333332 111 22567788999999999999998
Q ss_pred HHHhh
Q 001454 628 AHLRQ 632 (1075)
Q Consensus 628 ~~lr~ 632 (1075)
..-|.
T Consensus 163 ~rhre 167 (510)
T KOG4211|consen 163 GRHRE 167 (510)
T ss_pred HHHHH
Confidence 76554
No 101
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=96.23 E-value=0.0021 Score=69.23 Aligned_cols=65 Identities=15% Similarity=0.019 Sum_probs=58.9
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec----cCceEEEEecCHHHHHHHHHhhcCCcee
Q 001454 485 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP----IKGFALVEYINIIDAIRAREYIRNHFSW 549 (1075)
Q Consensus 485 ~~s~~LWVGnL~~~vte~dL~~~F~~fG~Le~v~~~~----~rgfAFVeF~~i~DAv~A~~~L~G~~~~ 549 (1075)
.+.++|||||+...|+|+.|+++|-.=||+..|.+-. ...||||+|++.-----|++.|+|-.+.
T Consensus 7 e~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~kFa~v~f~~E~sv~~a~~L~ng~~l~ 75 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQKFAYVFFPNENSVQLAGQLENGDDLE 75 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCceeeeecccccchhhhhhhcccchhc
Confidence 4579999999999999999999999999999999843 4459999999999999999999999865
No 102
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=96.21 E-value=0.0062 Score=69.28 Aligned_cols=62 Identities=21% Similarity=0.372 Sum_probs=54.8
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhcCC
Q 001454 485 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNH 546 (1075)
Q Consensus 485 ~~s~~LWVGnL~~~vte~dL~~~F~~fG~Le~v~~~~------~rgfAFVeF~~i~DAv~A~~~L~G~ 546 (1075)
+.-+.+||.++-++.+|+||...|+-||+|..-..++ -|||.|+||.+..---+|+-.|+-.
T Consensus 208 k~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlF 275 (544)
T KOG0124|consen 208 KKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLF 275 (544)
T ss_pred HhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchh
Confidence 4568899999999999999999999999999888864 5899999999998888888888743
No 103
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=96.19 E-value=0.23 Score=59.14 Aligned_cols=155 Identities=17% Similarity=0.262 Sum_probs=99.8
Q ss_pred eeeecCCcccccccccCceEEeccCCCccCHHHHHHHhhccCCcceEEE--------eccCc---eEEEEecCHHH---H
Q 001454 471 VWYFDEDPAAMDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFF--------FPIKG---FALVEYINIID---A 536 (1075)
Q Consensus 471 ~~~~~g~~~a~dv~~~s~~LWVGnL~~~vte~dL~~~F~~fG~Le~v~~--------~~~rg---fAFVeF~~i~D---A 536 (1075)
.|..-.-+---..-.-|++++||.|+.+++|+.|-.-|.+||++--=|= ++++| |+|..|++.+- -
T Consensus 243 ~~~~~~~~~~~~~~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~L 322 (520)
T KOG0129|consen 243 TWSGSLPPRGYRSPRYSRKVFVGGLPWDITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSL 322 (520)
T ss_pred hhccccCCCCCCccccccceeecCCCccccHHHHHhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHH
Confidence 4444444444455566999999999999999999999999999865443 56888 99999997653 3
Q ss_pred HHHHHhhcCCceeEEEEeecCCCCc-------------cccc-ceeccccceEEEccCCCchhHHHHHHhhhcccccCCc
Q 001454 537 IRAREYIRNHFSWRVKFMDVGLGTK-------------GVIN-GVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPY 602 (1075)
Q Consensus 537 v~A~~~L~G~~~~RI~F~r~~~g~~-------------g~~~-g~~~~~s~~lwVG~iss~~~keeLf~E~~k~~~kgp~ 602 (1075)
+.|+..=.|+-...|.-- .++.+ ..+. -..+-+.|.++||+++--..-+||-.=|+- ++|.+
T Consensus 323 l~aC~~~~~~~yf~vss~--~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~--lyGgV 398 (520)
T KOG0129|consen 323 LSACSEGEGNYYFKVSSP--TIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMED--LFGGV 398 (520)
T ss_pred HHHHhhcccceEEEEecC--cccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHH--hcCce
Confidence 344444222221111111 11111 0011 112458999999999999999998777763 55555
Q ss_pred ee--ecCC-----CCCcccccccCHHHHHHHHHH
Q 001454 603 MV--TDLS-----CEGALLMEFRTPEEATTAMAH 629 (1075)
Q Consensus 603 ~f--~dls-----er~~LpVEF~s~edA~~A~~~ 629 (1075)
-. +|.. .+++.=|=|.+.....+|+..
T Consensus 399 ~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 399 LYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred EEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 33 3333 456666788777777777543
No 104
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=96.17 E-value=0.011 Score=63.92 Aligned_cols=72 Identities=17% Similarity=0.297 Sum_probs=65.5
Q ss_pred ccccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec-cCceEEEEecCHHHHHHHHHhhcCCcee-----EEEEe
Q 001454 483 IFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP-IKGFALVEYINIIDAIRAREYIRNHFSW-----RVKFM 554 (1075)
Q Consensus 483 v~~~s~~LWVGnL~~~vte~dL~~~F~~fG~Le~v~~~~-~rgfAFVeF~~i~DAv~A~~~L~G~~~~-----RI~F~ 554 (1075)
-..+.+-|++-||+..++...|+.+|+.|.-.+.|++.+ -++.|||+|.+...|-.|+.+|||.++- +|.|+
T Consensus 142 ~~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a 219 (221)
T KOG4206|consen 142 MAPPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPRSGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFA 219 (221)
T ss_pred CCCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCCCceeEEecchhhhhHHHhhhhccceeccCceEEeccc
Confidence 357889999999999999999999999999999999887 8899999999999999999999998764 56554
No 105
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=95.98 E-value=0.021 Score=70.11 Aligned_cols=17 Identities=24% Similarity=0.466 Sum_probs=11.0
Q ss_pred cCCCCcceEEEEeecCCc
Q 001454 1053 IAPNSSDCLVALVLPKET 1070 (1075)
Q Consensus 1053 la~d~~ecLIalvlP~e~ 1070 (1075)
+..+++|||..+ +|||.
T Consensus 473 L~~~~ve~L~r~-lPTe~ 489 (830)
T KOG1923|consen 473 LSLEPVELLQRI-LPTEA 489 (830)
T ss_pred cCCcHHHHHHhc-CCchH
Confidence 456667777776 66664
No 106
>smart00362 RRM_2 RNA recognition motif.
Probab=95.95 E-value=0.013 Score=48.02 Aligned_cols=60 Identities=20% Similarity=0.313 Sum_probs=46.7
Q ss_pred eEEEccCCCchhHHHHHHhhhcccccCCceeec--CCCCCcccccccCHHHHHHHHHHHhhc
Q 001454 574 HVYVGNIPNQWAKDEILHESYKVVYKGPYMVTD--LSCEGALLMEFRTPEEATTAMAHLRQH 633 (1075)
Q Consensus 574 ~lwVG~iss~~~keeLf~E~~k~~~kgp~~f~d--lser~~LpVEF~s~edA~~A~~~lr~~ 633 (1075)
.|||++++..+..+||.+-+..++....+.+.. ...++.+++||.+.++|..|+..+++.
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~ 62 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGT 62 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCc
Confidence 389999999999999999998766444333221 223589999999999999999888753
No 107
>KOG1830 consensus Wiskott Aldrich syndrome proteins [Cytoskeleton]
Probab=95.92 E-value=0.3 Score=57.15 Aligned_cols=18 Identities=22% Similarity=0.113 Sum_probs=10.9
Q ss_pred hhHHHHHhhcCCchhhcc
Q 001454 1032 SIWARLMFILPYSQDICS 1049 (1075)
Q Consensus 1032 s~~krlL~llPes~evcs 1049 (1075)
-+.||+.-++=++++-.+
T Consensus 492 iLsRRiaveysdseDdss 509 (518)
T KOG1830|consen 492 ILSRRIAVEYSDSEDDSS 509 (518)
T ss_pred HHHHHHHHHhccCccccc
Confidence 345777777766665443
No 108
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=95.91 E-value=0.026 Score=54.21 Aligned_cols=69 Identities=13% Similarity=0.252 Sum_probs=54.8
Q ss_pred eEEeccCCCccCHHHHHHHhhcc--CCcceEEE------eccCceEEEEecCHHHHHHHHHhhcCCc--------eeEEE
Q 001454 489 QLWLGSFGPEASEAHIRFQIDRF--GPLEHFFF------FPIKGFALVEYINIIDAIRAREYIRNHF--------SWRVK 552 (1075)
Q Consensus 489 ~LWVGnL~~~vte~dL~~~F~~f--G~Le~v~~------~~~rgfAFVeF~~i~DAv~A~~~L~G~~--------~~RI~ 552 (1075)
+|-|-||++.-|.++|.+++... |..|=|.+ -...|||||+|.+.++|..-.+.++|+. +|.|.
T Consensus 3 TvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i~ 82 (97)
T PF04059_consen 3 TVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEIS 82 (97)
T ss_pred eEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEEe
Confidence 57789999999999999988765 33332222 2379999999999999999999999984 45788
Q ss_pred EeecC
Q 001454 553 FMDVG 557 (1075)
Q Consensus 553 F~r~~ 557 (1075)
+|+.+
T Consensus 83 yAriQ 87 (97)
T PF04059_consen 83 YARIQ 87 (97)
T ss_pred hhHhh
Confidence 87763
No 109
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=95.89 E-value=0.0079 Score=60.55 Aligned_cols=67 Identities=19% Similarity=0.214 Sum_probs=51.5
Q ss_pred cccceEEEccCCCchhHHHHHHhhhcccccCCcee-ec---CCCCCcccccccCHHHHHHHHHHHhhcccC
Q 001454 570 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TD---LSCEGALLMEFRTPEEATTAMAHLRQHRKS 636 (1075)
Q Consensus 570 ~~s~~lwVG~iss~~~keeLf~E~~k~~~kgp~~f-~d---lser~~LpVEF~s~edA~~A~~~lr~~r~e 636 (1075)
..|+.|||||+|=...+|||-.=+-+.+-+-.+.+ +| ...=+.-+|||++.+||..||+++.+.+.+
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLd 104 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLD 104 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCccc
Confidence 36999999999999999998777766663333221 22 233367789999999999999999998864
No 110
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=95.87 E-value=0.013 Score=48.18 Aligned_cols=61 Identities=20% Similarity=0.311 Sum_probs=48.2
Q ss_pred eEEEccCCCchhHHHHHHhhhcccccCCceeecC---CCCCcccccccCHHHHHHHHHHHhhcc
Q 001454 574 HVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDL---SCEGALLMEFRTPEEATTAMAHLRQHR 634 (1075)
Q Consensus 574 ~lwVG~iss~~~keeLf~E~~k~~~kgp~~f~dl---ser~~LpVEF~s~edA~~A~~~lr~~r 634 (1075)
.|+|++++...+.++|..-+..++....+.+..- ..++..+++|.+.++|..|++.+++..
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~ 64 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKE 64 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCe
Confidence 3899999999999999999988754444433221 236899999999999999999888753
No 111
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=95.85 E-value=0.094 Score=60.35 Aligned_cols=150 Identities=15% Similarity=0.108 Sum_probs=108.5
Q ss_pred cCceEEeccCCCc-cCHHHHHHHhhccCCcceEEEec-cCceEEEEecCHHHHHHHHHhhcCCcee--EEEEeecC----
Q 001454 486 ASKQLWLGSFGPE-ASEAHIRFQIDRFGPLEHFFFFP-IKGFALVEYINIIDAIRAREYIRNHFSW--RVKFMDVG---- 557 (1075)
Q Consensus 486 ~s~~LWVGnL~~~-vte~dL~~~F~~fG~Le~v~~~~-~rgfAFVeF~~i~DAv~A~~~L~G~~~~--RI~F~r~~---- 557 (1075)
+++-+-|-.|-.+ ..-+.|..+|=-||-++.|+|.+ -.|.|.||-.|...-++|+.-|++..+. +++|.-+.
T Consensus 286 ~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~SkQ~~v 365 (494)
T KOG1456|consen 286 PGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKPGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVSKQNFV 365 (494)
T ss_pred CCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecccceeEEEcCcHHHHHHHHHHhccCccccceEEEeecccccc
Confidence 3556667677666 34566889999999999999987 8899999999999999999999999886 77766332
Q ss_pred ---------CC---------Ccc---cccceecc-----ccceEEEccCCCchhHHHHHHhhhcccccCCceeecCCCC-
Q 001454 558 ---------LG---------TKG---VINGVAVG-----SCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCE- 610 (1075)
Q Consensus 558 ---------~g---------~~g---~~~g~~~~-----~s~~lwVG~iss~~~keeLf~E~~k~~~kgp~~f~dlser- 610 (1075)
.| +|- ..-+-|++ +||.|--=+.+.-+++|+|+.=+..-.-+ ++.+.-|..|
T Consensus 366 ~~~~pflLpDgSpSfKdys~SkNnRFssp~qAsKNrIq~Ps~vLHffNaP~~vtEe~l~~i~nek~v~-~~svkvFp~ks 444 (494)
T KOG1456|consen 366 SPVQPFLLPDGSPSFKDYSGSKNNRFSSPEQASKNRIQPPSNVLHFFNAPLGVTEEQLIGICNEKDVP-PTSVKVFPLKS 444 (494)
T ss_pred ccCCceecCCCCcchhhcccccccccCChhHhhcccccCCcceeEEecCCCccCHHHHHHHhhhcCCC-cceEEeecccc
Confidence 11 110 01122233 79999888999999999887666543333 4444333222
Q ss_pred ---CcccccccCHHHHHHHHHHHhhcccC
Q 001454 611 ---GALLMEFRTPEEATTAMAHLRQHRKS 636 (1075)
Q Consensus 611 ---~~LpVEF~s~edA~~A~~~lr~~r~e 636 (1075)
-.=++||++.+||..|+..++..-.+
T Consensus 445 erSssGllEfe~~s~Aveal~~~NH~pi~ 473 (494)
T KOG1456|consen 445 ERSSSGLLEFENKSDAVEALMKLNHYPIE 473 (494)
T ss_pred cccccceeeeehHHHHHHHHHHhcccccc
Confidence 22369999999999999998875543
No 112
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=95.75 E-value=0.0071 Score=69.87 Aligned_cols=135 Identities=15% Similarity=0.211 Sum_probs=94.8
Q ss_pred ceEEeccCCCccCHHHHHHHhhcc--CCcceEEEeccCceEEEEecCHHHHHHHHHhhcCCcee---EEEEeecCC-CCc
Q 001454 488 KQLWLGSFGPEASEAHIRFQIDRF--GPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW---RVKFMDVGL-GTK 561 (1075)
Q Consensus 488 ~~LWVGnL~~~vte~dL~~~F~~f--G~Le~v~~~~~rgfAFVeF~~i~DAv~A~~~L~G~~~~---RI~F~r~~~-g~~ 561 (1075)
++||+|||++.++.+||+.+|.-- |-=-.|.+ --|||||++-+-.-|.+|.+.+.|+.-. |++.--.-. ..
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~--k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~kkq- 78 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV--KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPKKQ- 78 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceee--ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhHHH-
Confidence 579999999999999999999754 21223443 3499999999999999999999998543 555432211 11
Q ss_pred ccccceeccccceEEEccCCCchhHHHHHHhhh-cccccCCceeecCCCCCccc-ccccCHHHHHHHHHHHhhccc
Q 001454 562 GVINGVAVGSCFHVYVGNIPNQWAKDEILHESY-KVVYKGPYMVTDLSCEGALL-MEFRTPEEATTAMAHLRQHRK 635 (1075)
Q Consensus 562 g~~~g~~~~~s~~lwVG~iss~~~keeLf~E~~-k~~~kgp~~f~dlser~~Lp-VEF~s~edA~~A~~~lr~~r~ 635 (1075)
-|+.+-+-+|+++..-| +++-+. ..+....++.+....+.... +.|-+-+.+..|+++|++.-.
T Consensus 79 ---------rsrk~Qirnippql~we-vld~Ll~qyg~ve~~eqvnt~~etavvnvty~~~~~~~~ai~kl~g~Q~ 144 (584)
T KOG2193|consen 79 ---------RSRKIQIRNIPPQLQWE-VLDSLLAQYGTVENCEQVNTDSETAVVNVTYSAQQQHRQAIHKLNGPQL 144 (584)
T ss_pred ---------HhhhhhHhcCCHHHHHH-HHHHHHhccCCHhHhhhhccchHHHHHHHHHHHHHHHHHHHHhhcchHh
Confidence 37889999999986544 444333 33344444544444444433 889999999999999888543
No 113
>PRK15319 AIDA autotransporter-like protein ShdA; Provisional
Probab=95.72 E-value=0.012 Score=77.36 Aligned_cols=6 Identities=50% Similarity=1.320 Sum_probs=2.6
Q ss_pred eeeecC
Q 001454 471 VWYFDE 476 (1075)
Q Consensus 471 ~~~~~g 476 (1075)
-||-|.
T Consensus 1186 sw~a~~ 1191 (2039)
T PRK15319 1186 SWYADR 1191 (2039)
T ss_pred EEeccC
Confidence 344443
No 114
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=95.57 E-value=0.018 Score=68.57 Aligned_cols=153 Identities=18% Similarity=0.208 Sum_probs=108.1
Q ss_pred ccccccCceEEeccCCCccCHHHHHHHhhcc-----------C-CcceEEEeccCceEEEEecCHHHHHHHHHhhcC---
Q 001454 481 MDIFSASKQLWLGSFGPEASEAHIRFQIDRF-----------G-PLEHFFFFPIKGFALVEYINIIDAIRAREYIRN--- 545 (1075)
Q Consensus 481 ~dv~~~s~~LWVGnL~~~vte~dL~~~F~~f-----------G-~Le~v~~~~~rgfAFVeF~~i~DAv~A~~~L~G--- 545 (1075)
++.--..+++|||++.+.++|...+..|..= | ++.++.+-..++|||++|+.+.+|.+|+ .++|
T Consensus 169 ~~~t~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n~~~nfa~ie~~s~~~at~~~-~~~~~~f 247 (500)
T KOG0120|consen 169 SQATRQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLNLEKNFAFIEFRSISEATEAM-ALDGIIF 247 (500)
T ss_pred cchhhhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeecccccceeEEecCCCchhhhh-cccchhh
Confidence 3444557899999999999999999888754 2 3667777779999999999999999985 3444
Q ss_pred --CceeEEEEeecC-----------CCCcccccceecc--ccceEEEccCCCchhHHHHHHhhhcccccCCcee-ec---
Q 001454 546 --HFSWRVKFMDVG-----------LGTKGVINGVAVG--SCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TD--- 606 (1075)
Q Consensus 546 --~~~~RI~F~r~~-----------~g~~g~~~g~~~~--~s~~lwVG~iss~~~keeLf~E~~k~~~kgp~~f-~d--- 606 (1075)
..++-++=.+-+ +|+.+-.-+-.++ ..+.++||+++-...++++..-++.++.+..+.. .+
T Consensus 248 ~g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~ 327 (500)
T KOG0120|consen 248 EGRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSAT 327 (500)
T ss_pred CCCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeeccccc
Confidence 333311111111 1122221122222 5778999999999999999988888886666643 33
Q ss_pred CCCCCcccccccCHHHHHHHHHHHhhcc
Q 001454 607 LSCEGALLMEFRTPEEATTAMAHLRQHR 634 (1075)
Q Consensus 607 lser~~LpVEF~s~edA~~A~~~lr~~r 634 (1075)
.-.+++++-||-.+-..-.|.++|++..
T Consensus 328 g~skg~af~ey~dpsvtd~A~agLnGm~ 355 (500)
T KOG0120|consen 328 GNSKGFAFCEYCDPSVTDQAIAGLNGMQ 355 (500)
T ss_pred ccccceeeeeeeCCcchhhhhcccchhh
Confidence 4578999999988877777777877744
No 115
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=95.40 E-value=0.011 Score=66.96 Aligned_cols=53 Identities=17% Similarity=0.452 Sum_probs=45.3
Q ss_pred cCceEEeccCCCccCHHHHHHHhhccCCcceEEE------eccCceEEEEecCHHHHHHH
Q 001454 486 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFF------FPIKGFALVEYINIIDAIRA 539 (1075)
Q Consensus 486 ~s~~LWVGnL~~~vte~dL~~~F~~fG~Le~v~~------~~~rgfAFVeF~~i~DAv~A 539 (1075)
.+++++||.|+.+++|.|++..|++||.|..+-+ -+.|||+||.|.+.+ +++-
T Consensus 96 ~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~-sVdk 154 (311)
T KOG4205|consen 96 RTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSED-SVDK 154 (311)
T ss_pred ceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEecccc-ccce
Confidence 7899999999999999999999999998887665 259999999998654 4443
No 116
>KOG1925 consensus Rac1 GTPase effector FHOS [Signal transduction mechanisms; Cytoskeleton]
Probab=95.37 E-value=0.024 Score=66.75 Aligned_cols=121 Identities=17% Similarity=0.205 Sum_probs=68.1
Q ss_pred CCCCCCcccccCceeeeeeecceeccCcccceeeeecccccccccccCCCCCCCCcccccCCCcccccccccccccC---
Q 001454 912 PVVEPMQVERSGQLLQYQWQGALCKSGVHYCTIYAQREESDICKYTHDISEPAEWPAKLDMTKRTDFRHVKSTFTST--- 988 (1075)
Q Consensus 912 ~~p~p~~s~S~~~~v~~qWqGsL~kSg~~yCtil~s~idsdICkat~aisePs~WP~~lD~TnRTDFd~VeslFa~t--- 988 (1075)
.++....-..+...+-+-|+......+--.- .+.-|. +-|-..+... .|...++++|...
T Consensus 271 ~v~~~~~~~~~r~~~KL~Wr~~~~~~~~Gv~-------~~r~~~--------t~W~s~D~~~--~D~~r~~~LFEsr~~~ 333 (817)
T KOG1925|consen 271 SVPDSSALPTKRKTVKLFWRDVKLAGGHGVS-------ASRPCA--------TLWASLDPVS--VDTARLEHLFESRAKE 333 (817)
T ss_pred CCCCcccccccCceeEEEeecceecCCCCCc-------cccccc--------hhhhccCcce--ecHHHHHHHHHHhhhh
Confidence 3344444455677888999987765543221 233344 4455433332 5566688888762
Q ss_pred --CCCCccccccCCCCCCCccchhcHHHHHhhccccceE-----eecch---hhhHHHHHhhcCCchhhcc
Q 001454 989 --PPNKREVCRLVPSSPGDHKGFQDFVSYLKQRECAGVI-----KIPAV---KSIWARLMFILPYSQDICS 1049 (1075)
Q Consensus 989 --PP~kREVcrLvP~s~~D~K~fqdFiifL~Q~~cagvi-----Kl~~v---~s~~krlL~llPes~evcs 1049 (1075)
|.+|-.--|..-.+..+.|..|.++|.|-.-..-.|| |++.. |..|..+|+-.|..+|..+
T Consensus 334 ~~P~KK~~E~r~~~~tVL~~KRt~AINIGLT~LPPv~VI~AA~~~FD~~~~~KDGIEK~L~MmPt~eE~qk 404 (817)
T KOG1925|consen 334 VLPSKKAGEGRRTMTTVLDPKRTNAINIGLTTLPPVHVIKAALLNFDEFAVSKDGIEKLLTMMPTEEERQK 404 (817)
T ss_pred hccchhhcccceeeeeecCcccccceeeccccCCchhhhHHHHhcchhhhcchhhHHHHHHhCCCHHHHHH
Confidence 2222111111122457777788887776443333333 44433 5788899999998877766
No 117
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=95.28 E-value=0.055 Score=66.57 Aligned_cols=18 Identities=22% Similarity=0.135 Sum_probs=12.3
Q ss_pred hhHHHHHhhcCCchhhcc
Q 001454 1032 SIWARLMFILPYSQDICS 1049 (1075)
Q Consensus 1032 s~~krlL~llPes~evcs 1049 (1075)
+...-++..+|...|+-.
T Consensus 476 ~~ve~L~r~lPTe~E~kl 493 (830)
T KOG1923|consen 476 EPVELLQRILPTEAEVKL 493 (830)
T ss_pred cHHHHHHhcCCchHHHHH
Confidence 455667778887777655
No 118
>PLN03120 nucleic acid binding protein; Provisional
Probab=94.99 E-value=0.029 Score=62.06 Aligned_cols=63 Identities=16% Similarity=0.047 Sum_probs=53.2
Q ss_pred cceEEEccCCCchhHHHHHHhhhcccccCCcee-ecCCCCCcccccccCHHHHHHHHHHHhhccc
Q 001454 572 CFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TDLSCEGALLMEFRTPEEATTAMAHLRQHRK 635 (1075)
Q Consensus 572 s~~lwVG~iss~~~keeLf~E~~k~~~kgp~~f-~dlser~~LpVEF~s~edA~~A~~~lr~~r~ 635 (1075)
.+.||||||+...++++|...|..+|.+..+.+ .+-..++.++|+|++.++|..|+. |++...
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~~l 67 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGATI 67 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCCee
Confidence 578999999999999999999998887777755 444467899999999999999995 777543
No 119
>smart00360 RRM RNA recognition motif.
Probab=94.98 E-value=0.03 Score=45.58 Aligned_cols=57 Identities=23% Similarity=0.294 Sum_probs=45.0
Q ss_pred EccCCCchhHHHHHHhhhcccccCCceeec----CCCCCcccccccCHHHHHHHHHHHhhc
Q 001454 577 VGNIPNQWAKDEILHESYKVVYKGPYMVTD----LSCEGALLMEFRTPEEATTAMAHLRQH 633 (1075)
Q Consensus 577 VG~iss~~~keeLf~E~~k~~~kgp~~f~d----lser~~LpVEF~s~edA~~A~~~lr~~ 633 (1075)
|++++..++.++|..-+..++....+.+.. ...++.++|+|.+.++|..|+..+++.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~ 61 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGK 61 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCC
Confidence 678999999999999998877555554432 223679999999999999999888743
No 120
>KOG4672 consensus Uncharacterized conserved low complexity protein [Function unknown]
Probab=94.90 E-value=0.12 Score=60.18 Aligned_cols=11 Identities=27% Similarity=0.253 Sum_probs=5.6
Q ss_pred hHHHHHHhhhc
Q 001454 585 AKDEILHESYK 595 (1075)
Q Consensus 585 ~keeLf~E~~k 595 (1075)
..+||..+|.+
T Consensus 48 Dp~qi~~~m~k 58 (487)
T KOG4672|consen 48 DPDQITSKMEK 58 (487)
T ss_pred CHHHHHHHHHh
Confidence 34455555554
No 121
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=94.84 E-value=0.6 Score=54.22 Aligned_cols=143 Identities=17% Similarity=0.113 Sum_probs=98.5
Q ss_pred eccCCCccCHHHHHHHhhcc----CCcceEEEe-----ccCceEEEEecCHHHHHHHHHhh---cCCcee----------
Q 001454 492 LGSFGPEASEAHIRFQIDRF----GPLEHFFFF-----PIKGFALVEYINIIDAIRAREYI---RNHFSW---------- 549 (1075)
Q Consensus 492 VGnL~~~vte~dL~~~F~~f----G~Le~v~~~-----~~rgfAFVeF~~i~DAv~A~~~L---~G~~~~---------- 549 (1075)
.-.|+-++++.|+.+.|..- |-.+.|.|. ++-|=|||.|...+||-.|++-= -|++-.
T Consensus 166 mRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~khrq~iGqRYIElFRSTaaEv 245 (508)
T KOG1365|consen 166 MRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRKHRQNIGQRYIELFRSTAAEV 245 (508)
T ss_pred ecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHHHHHHHhHHHHHHHHHhHHHH
Confidence 35788899999999999743 244567664 26689999999999999997543 333321
Q ss_pred ---EEEEeecC-CC--Ccccccceec------cccceEEEccCCCchhHHHHHHhhhccc----ccCCceeec--CCCCC
Q 001454 550 ---RVKFMDVG-LG--TKGVINGVAV------GSCFHVYVGNIPNQWAKDEILHESYKVV----YKGPYMVTD--LSCEG 611 (1075)
Q Consensus 550 ---RI~F~r~~-~g--~~g~~~g~~~------~~s~~lwVG~iss~~~keeLf~E~~k~~----~kgp~~f~d--lser~ 611 (1075)
--++++.. ++ +-+.+.|+.. ++-.-|-.-|.+=...+|+|++-++-|. ..|-+++.. ....+
T Consensus 246 qqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~qGrPSG 325 (508)
T KOG1365|consen 246 QQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNGQGRPSG 325 (508)
T ss_pred HHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcCCCCcCh
Confidence 11233222 22 2222332222 2345677889999999999999888777 334456655 67788
Q ss_pred cccccccCHHHHHHHHHHHhhcc
Q 001454 612 ALLMEFRTPEEATTAMAHLRQHR 634 (1075)
Q Consensus 612 ~LpVEF~s~edA~~A~~~lr~~r 634 (1075)
-+||||++.|+|.+|+...+.+.
T Consensus 326 eAFIqm~nae~a~aaaqk~hk~~ 348 (508)
T KOG1365|consen 326 EAFIQMRNAERARAAAQKCHKKL 348 (508)
T ss_pred hhhhhhhhhHHHHHHHHHHHHhh
Confidence 99999999999999987766544
No 122
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=94.79 E-value=0.039 Score=55.59 Aligned_cols=63 Identities=19% Similarity=0.245 Sum_probs=54.2
Q ss_pred cceEEEccCCCchhHHHHHHhhhcccccCCcee-e---cCCCCCcccccccCHHHHHHHHHHHhhcc
Q 001454 572 CFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-T---DLSCEGALLMEFRTPEEATTAMAHLRQHR 634 (1075)
Q Consensus 572 s~~lwVG~iss~~~keeLf~E~~k~~~kgp~~f-~---dlser~~LpVEF~s~edA~~A~~~lr~~r 634 (1075)
.+.||||+++....+|+|...+..++....+.+ . ....++.++|+|.+.++|..|+..+++..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~ 181 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKE 181 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCe
Confidence 599999999999999999999999886644433 3 36889999999999999999999999533
No 123
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=94.69 E-value=0.044 Score=65.35 Aligned_cols=65 Identities=9% Similarity=0.234 Sum_probs=56.6
Q ss_pred cccCceEEeccCCCccCHHHHHHHhhccCCcceEEEe---c---cCceEEEEecCHHHHHHHHHhhcCCce
Q 001454 484 FSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF---P---IKGFALVEYINIIDAIRAREYIRNHFS 548 (1075)
Q Consensus 484 ~~~s~~LWVGnL~~~vte~dL~~~F~~fG~Le~v~~~---~---~rgfAFVeF~~i~DAv~A~~~L~G~~~ 548 (1075)
.+-++||||..|+.-+...||..+|++||++..-+++ + .|-|.||..-.-.||-..++.|.-+.+
T Consensus 402 s~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTEL 472 (940)
T KOG4661|consen 402 STLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTEL 472 (940)
T ss_pred cccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhh
Confidence 4458999999999999999999999999999977764 2 677999999999999999988876644
No 124
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=94.59 E-value=0.65 Score=53.38 Aligned_cols=58 Identities=17% Similarity=0.216 Sum_probs=40.5
Q ss_pred ceEEEccCCCchhHHHHHHhhhcccccC--Ccee----ecCCCCCcccccccCHHHHHHHHHHH
Q 001454 573 FHVYVGNIPNQWAKDEILHESYKVVYKG--PYMV----TDLSCEGALLMEFRTPEEATTAMAHL 630 (1075)
Q Consensus 573 ~~lwVG~iss~~~keeLf~E~~k~~~kg--p~~f----~dlser~~LpVEF~s~edA~~A~~~l 630 (1075)
--+|||+.-=..++++|++-+.+.+.-. .++| +...+|+++++-.-+-.....-|..|
T Consensus 81 ~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiL 144 (498)
T KOG4849|consen 81 YCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEIL 144 (498)
T ss_pred EEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhc
Confidence 4579999998899999999999887433 2222 34677888888777655444444443
No 125
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=94.42 E-value=0.01 Score=73.29 Aligned_cols=134 Identities=17% Similarity=0.193 Sum_probs=103.2
Q ss_pred cCCcccccccccCceEEeccCCCccCHHHHHHHhhccCCcceEEEe------ccCceEEEEecCHHHHHHHHHhhcCCce
Q 001454 475 DEDPAAMDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF------PIKGFALVEYINIIDAIRAREYIRNHFS 548 (1075)
Q Consensus 475 ~g~~~a~dv~~~s~~LWVGnL~~~vte~dL~~~F~~fG~Le~v~~~------~~rgfAFVeF~~i~DAv~A~~~L~G~~~ 548 (1075)
|--...-|.+.-.++.+|-||++...+.||...|..||-++.|.+. +.||+|||+|...++|-+|+...++++.
T Consensus 655 ~~~kvs~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~ 734 (881)
T KOG0128|consen 655 ENFKVSPNEIRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFF 734 (881)
T ss_pred hccCcCchHHHHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhh
Confidence 3334455556666789999999999999999999999999988874 5899999999999999999988877764
Q ss_pred eEEEEeecCCCCcccccceeccccceEEEccCCCchhHHHHHHhhhcccccCCc---eeecCCCCCcccccccCHHHHHH
Q 001454 549 WRVKFMDVGLGTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPY---MVTDLSCEGALLMEFRTPEEATT 625 (1075)
Q Consensus 549 ~RI~F~r~~~g~~g~~~g~~~~~s~~lwVG~iss~~~keeLf~E~~k~~~kgp~---~f~dlser~~LpVEF~s~edA~~ 625 (1075)
. ...+.|-|.+-+-+||++..=..+.+..-.+ .....-.++-|.++|.+..+|.+
T Consensus 735 g----------------------K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~ 792 (881)
T KOG0128|consen 735 G----------------------KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASR 792 (881)
T ss_pred h----------------------hhhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhh
Confidence 4 2346677788888888887766665522222 22345567788999999999988
Q ss_pred HHHHH
Q 001454 626 AMAHL 630 (1075)
Q Consensus 626 A~~~l 630 (1075)
+...+
T Consensus 793 ~~~s~ 797 (881)
T KOG0128|consen 793 KVASV 797 (881)
T ss_pred hcccc
Confidence 76553
No 126
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=94.18 E-value=0.084 Score=45.22 Aligned_cols=50 Identities=16% Similarity=0.315 Sum_probs=40.0
Q ss_pred EEeccCCCccCHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHH
Q 001454 490 LWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAR 540 (1075)
Q Consensus 490 LWVGnL~~~vte~dL~~~F~~fG~Le~v~~~~~rgfAFVeF~~i~DAv~A~ 540 (1075)
+=|-+..++-. +++...|..||.|.++.+-...++++|.|++..||+.|+
T Consensus 4 I~V~Gf~~~~~-~~vl~~F~~fGeI~~~~~~~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 4 ISVSGFPPDLA-EEVLEHFASFGEIVDIYVPESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred EEEEeECchHH-HHHHHHHHhcCCEEEEEcCCCCcEEEEEECCHHHHHhhC
Confidence 33445555554 445568999999999998878999999999999999984
No 127
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=94.18 E-value=0.078 Score=61.93 Aligned_cols=70 Identities=14% Similarity=0.010 Sum_probs=61.0
Q ss_pred cccccccCceEEeccCCCccCHHHHHHHhhccCCcceEEE-eccCceEEEEecCHHHHHHHHHhhcCCcee
Q 001454 480 AMDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFF-FPIKGFALVEYINIIDAIRAREYIRNHFSW 549 (1075)
Q Consensus 480 a~dv~~~s~~LWVGnL~~~vte~dL~~~F~~fG~Le~v~~-~~~rgfAFVeF~~i~DAv~A~~~L~G~~~~ 549 (1075)
|..+....|+++|-||+-+-|=.-|++.|..||.+.-.-+ .+.+.-..|-|...+||++|+..|+|.++-
T Consensus 529 a~gaarKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadime~GkskGVVrF~s~edAEra~a~Mngs~l~ 599 (608)
T KOG4212|consen 529 AVGAARKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIMENGKSKGVVRFFSPEDAERACALMNGSRLD 599 (608)
T ss_pred cccccccccEEEEecCCccccHHHHHHHHHhccceehhhhhccCCccceEEecCHHHHHHHHHHhccCccc
Confidence 6677778999999999999999999999999999886555 444444589999999999999999999874
No 128
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=94.15 E-value=0.051 Score=64.05 Aligned_cols=62 Identities=24% Similarity=0.255 Sum_probs=55.0
Q ss_pred ceEEEccCCCchhHHHHHHhhhcccccCCcee----ecCCCCCcccccccCHHHHHHHHHHHhhcc
Q 001454 573 FHVYVGNIPNQWAKDEILHESYKVVYKGPYMV----TDLSCEGALLMEFRTPEEATTAMAHLRQHR 634 (1075)
Q Consensus 573 ~~lwVG~iss~~~keeLf~E~~k~~~kgp~~f----~dlser~~LpVEF~s~edA~~A~~~lr~~r 634 (1075)
+.+|||+|+-.+++|+|...+..++.+-.+++ .....++++|+||...|+|..|++.|++..
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~ 84 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAE 84 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcc
Confidence 89999999999999999999999887766644 337889999999999999999999999743
No 129
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=94.05 E-value=0.036 Score=64.47 Aligned_cols=65 Identities=23% Similarity=0.326 Sum_probs=59.5
Q ss_pred cCceEEeccCCCccCHHHHHHHhhccCCcceEEEecc-------------------CceEEEEecCHHHHHHHHHhhcCC
Q 001454 486 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPI-------------------KGFALVEYINIIDAIRAREYIRNH 546 (1075)
Q Consensus 486 ~s~~LWVGnL~~~vte~dL~~~F~~fG~Le~v~~~~~-------------------rgfAFVeF~~i~DAv~A~~~L~G~ 546 (1075)
++|.|-+=||+-+-.-+.|+.+|+.+|.|.+|++-.+ +-+|||||+..+-|++|.+-|+-.
T Consensus 230 ~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~e 309 (484)
T KOG1855|consen 230 PSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNPE 309 (484)
T ss_pred ccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhchh
Confidence 6899999999999999999999999999999999655 668999999999999999999877
Q ss_pred ceeE
Q 001454 547 FSWR 550 (1075)
Q Consensus 547 ~~~R 550 (1075)
..||
T Consensus 310 ~~wr 313 (484)
T KOG1855|consen 310 QNWR 313 (484)
T ss_pred hhhh
Confidence 7774
No 130
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=94.05 E-value=0.034 Score=60.16 Aligned_cols=61 Identities=20% Similarity=0.132 Sum_probs=53.2
Q ss_pred CceEEeccCCCccCHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhcCCcee
Q 001454 487 SKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW 549 (1075)
Q Consensus 487 s~~LWVGnL~~~vte~dL~~~F~~fG~Le~v~~~~~rgfAFVeF~~i~DAv~A~~~L~G~~~~ 549 (1075)
.+.|-|=++...+...||...|.+||.+..... -++||||+|...+||..|++.|+|+.+.
T Consensus 99 ~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--~~~~~~v~Fs~~~da~ra~~~l~~~~~~ 159 (216)
T KOG0106|consen 99 HFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--RRNFAFVEFSEQEDAKRALEKLDGKKLN 159 (216)
T ss_pred cceeeeccchhhhhHHHHhhhhcccCCCchhhh--hccccceeehhhhhhhhcchhccchhhc
Confidence 356778888888999999999999999954444 7899999999999999999999999754
No 131
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=93.82 E-value=0.12 Score=49.96 Aligned_cols=57 Identities=19% Similarity=0.181 Sum_probs=39.3
Q ss_pred ceEEeccCCCccCHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhc
Q 001454 488 KQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIR 544 (1075)
Q Consensus 488 ~~LWVGnL~~~vte~dL~~~F~~fG~Le~v~~~~~rgfAFVeF~~i~DAv~A~~~L~ 544 (1075)
+-|.+-+++..++.++|.+.|..||+|.=|-|.++-.-|||-|.+.++|..|++.+.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~~g~VRf~~~~~A~~a~~~~~ 58 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDTEGYVRFKTPEAAQKALEKLK 58 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-SEEEEEESS---HHHHHHHHH
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCCEEEEEECCcchHHHHHHHHH
Confidence 346677799999999999999999999999999999999999999999999999876
No 132
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=93.27 E-value=0.084 Score=63.23 Aligned_cols=70 Identities=20% Similarity=0.267 Sum_probs=55.0
Q ss_pred cceeeeecCCcccccccccCceEEeccCCCccCHHHHHHHhhccCCcceEEEe-----ccCceEEEEecCHHHHHHHHHh
Q 001454 468 SQIVWYFDEDPAAMDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF-----PIKGFALVEYINIIDAIRAREY 542 (1075)
Q Consensus 468 ~~~~~~~~g~~~a~dv~~~s~~LWVGnL~~~vte~dL~~~F~~fG~Le~v~~~-----~~rgfAFVeF~~i~DAv~A~~~ 542 (1075)
.+.|-.+||.|. ||.---+.-+.-|..+|++||++.++.+= .-+||+|+||.+.++|..|++.
T Consensus 57 ~D~vVvv~g~Pv------------V~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~ 124 (698)
T KOG2314|consen 57 FDSVVVVDGAPV------------VGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKS 124 (698)
T ss_pred cceEEEECCCcc------------cChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHh
Confidence 455666888774 23222334466788999999999999873 2689999999999999999999
Q ss_pred hcCCcee
Q 001454 543 IRNHFSW 549 (1075)
Q Consensus 543 L~G~~~~ 549 (1075)
|+|+++-
T Consensus 125 l~G~~ld 131 (698)
T KOG2314|consen 125 LNGKRLD 131 (698)
T ss_pred cccceec
Confidence 9999764
No 133
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=93.09 E-value=0.14 Score=58.51 Aligned_cols=48 Identities=13% Similarity=0.276 Sum_probs=44.5
Q ss_pred HHHHHHHhhccCCcceEEEe--ccCceEEEEecCHHHHHHHHHhhcCCce
Q 001454 501 EAHIRFQIDRFGPLEHFFFF--PIKGFALVEYINIIDAIRAREYIRNHFS 548 (1075)
Q Consensus 501 e~dL~~~F~~fG~Le~v~~~--~~rgfAFVeF~~i~DAv~A~~~L~G~~~ 548 (1075)
++||++.=++||++++|.+| .+.|-|-|.|+|.++|..+++.|+|+..
T Consensus 290 kedl~eec~K~G~v~~vvv~d~hPdGvvtV~f~n~eeA~~ciq~m~GR~f 339 (382)
T KOG1548|consen 290 KEDLTEECEKFGQVRKVVVYDRHPDGVVTVSFRNNEEADQCIQTMDGRWF 339 (382)
T ss_pred HHHHHHHHHHhCCcceEEEeccCCCceeEEEeCChHHHHHHHHHhcCeee
Confidence 57788889999999999999 5999999999999999999999999864
No 134
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=92.90 E-value=0.069 Score=66.25 Aligned_cols=77 Identities=16% Similarity=0.190 Sum_probs=71.5
Q ss_pred ccccccCceEEeccCCCccCHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhcCCcee------EEEEe
Q 001454 481 MDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW------RVKFM 554 (1075)
Q Consensus 481 ~dv~~~s~~LWVGnL~~~vte~dL~~~F~~fG~Le~v~~~~~rgfAFVeF~~i~DAv~A~~~L~G~~~~------RI~F~ 554 (1075)
-|||+.--+.++-|..-+.+-.-|..++..||.+-+.|..|+-+-|.|+|..++-|+-|.++|+|+.+- ||-|+
T Consensus 292 snv~plqp~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~a 371 (1007)
T KOG4574|consen 292 SNVFPLQPKQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFA 371 (1007)
T ss_pred cccccCcchhhhhcccccchHHHHHHHHHhhcchhhheecccccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEec
Confidence 488888889999999999999999999999999999999999999999999999999999999999764 99999
Q ss_pred ecC
Q 001454 555 DVG 557 (1075)
Q Consensus 555 r~~ 557 (1075)
++.
T Consensus 372 k~~ 374 (1007)
T KOG4574|consen 372 KTL 374 (1007)
T ss_pred ccc
Confidence 664
No 135
>KOG1984 consensus Vesicle coat complex COPII, subunit SFB3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.91 E-value=8.2 Score=49.24 Aligned_cols=12 Identities=17% Similarity=0.105 Sum_probs=8.7
Q ss_pred hhHHHHHhhcCC
Q 001454 1032 SIWARLMFILPY 1043 (1075)
Q Consensus 1032 s~~krlL~llPe 1043 (1075)
+.||.+|.-+|.
T Consensus 441 e~ik~~l~~lp~ 452 (1007)
T KOG1984|consen 441 EAIKSVLEDLPR 452 (1007)
T ss_pred HHHHHHHhhcCc
Confidence 677777777775
No 136
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=91.87 E-value=0.25 Score=50.92 Aligned_cols=55 Identities=16% Similarity=0.238 Sum_probs=45.4
Q ss_pred cCCCccCHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhcCCcee
Q 001454 494 SFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW 549 (1075)
Q Consensus 494 nL~~~vte~dL~~~F~~fG~Le~v~~~~~rgfAFVeF~~i~DAv~A~~~L~G~~~~ 549 (1075)
|+.+.-.-..+-+.++.||+|++|+. .+|-.|.|.|+|+.-|-.|+.+.+-..+.
T Consensus 97 nm~~~edl~sV~~~Ls~fGpI~SVT~-cGrqsavVvF~d~~SAC~Av~Af~s~~pg 151 (166)
T PF15023_consen 97 NMQPTEDLKSVIQRLSVFGPIQSVTL-CGRQSAVVVFKDITSACKAVSAFQSRAPG 151 (166)
T ss_pred cCChHHHHHHHHHHHHhcCCcceeee-cCCceEEEEehhhHHHHHHHHhhcCCCCC
Confidence 45555445567778899999999986 68899999999999999999999977553
No 137
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=91.84 E-value=0.19 Score=42.05 Aligned_cols=44 Identities=18% Similarity=0.162 Sum_probs=31.2
Q ss_pred HHHhhhcccccCCceeecCCCC-CcccccccCHHHHHHHHHHHhhcc
Q 001454 589 ILHESYKVVYKGPYMVTDLSCE-GALLMEFRTPEEATTAMAHLRQHR 634 (1075)
Q Consensus 589 Lf~E~~k~~~kgp~~f~dlser-~~LpVEF~s~edA~~A~~~lr~~r 634 (1075)
|.+.+.++|.+..+. ....+ +.++|||++.+||..|+++|++..
T Consensus 1 L~~~f~~fG~V~~i~--~~~~~~~~a~V~f~~~~~A~~a~~~l~~~~ 45 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIK--IFKKKRGFAFVEFASVEDAQKAIEQLNGRQ 45 (56)
T ss_dssp HHHHHTTTS-EEEEE--EETTSTTEEEEEESSHHHHHHHHHHHTTSE
T ss_pred ChHHhCCcccEEEEE--EEeCCCCEEEEEECCHHHHHHHHHHhCCCE
Confidence 345555555444333 33444 999999999999999999998754
No 138
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=91.57 E-value=0.24 Score=48.83 Aligned_cols=64 Identities=16% Similarity=0.145 Sum_probs=54.7
Q ss_pred ccceEEEccCCCchhHHHHHHhhhcccccCCcee-ecCCCCCcccccccCHHHHHHHHHHHhhcc
Q 001454 571 SCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TDLSCEGALLMEFRTPEEATTAMAHLRQHR 634 (1075)
Q Consensus 571 ~s~~lwVG~iss~~~keeLf~E~~k~~~kgp~~f-~dlser~~LpVEF~s~edA~~A~~~lr~~r 634 (1075)
-++.|||-+.|-.+++||+..=+.+.+.+..+++ -.-..++++||=|+.+.||..|+.||.+..
T Consensus 17 vnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n 81 (124)
T KOG0114|consen 17 VNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYN 81 (124)
T ss_pred hheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccc
Confidence 4789999999999999999887777776666666 335678999999999999999999998865
No 139
>smart00361 RRM_1 RNA recognition motif.
Probab=91.29 E-value=0.2 Score=44.16 Aligned_cols=48 Identities=19% Similarity=0.200 Sum_probs=35.7
Q ss_pred HHHHHhhh----cccccCCce--eec-----CCCCCcccccccCHHHHHHHHHHHhhcc
Q 001454 587 DEILHESY----KVVYKGPYM--VTD-----LSCEGALLMEFRTPEEATTAMAHLRQHR 634 (1075)
Q Consensus 587 eeLf~E~~----k~~~kgp~~--f~d-----lser~~LpVEF~s~edA~~A~~~lr~~r 634 (1075)
|+|+.++. +++.+..+. +.+ ...++.++|+|.+.+||..|+.+|+++.
T Consensus 3 ~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~ 61 (70)
T smart00361 3 EDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRY 61 (70)
T ss_pred hhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 44444444 888776653 233 4468899999999999999999999864
No 140
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=90.87 E-value=0.14 Score=61.79 Aligned_cols=70 Identities=21% Similarity=0.349 Sum_probs=62.4
Q ss_pred cCceEEeccCCCccCHHHHHHHhh-ccCCcceEEEeccCceEEEEecCHHHHHHHHHhhcCCcee--------EEEEeec
Q 001454 486 ASKQLWLGSFGPEASEAHIRFQID-RFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW--------RVKFMDV 556 (1075)
Q Consensus 486 ~s~~LWVGnL~~~vte~dL~~~F~-~fG~Le~v~~~~~rgfAFVeF~~i~DAv~A~~~L~G~~~~--------RI~F~r~ 556 (1075)
+|+-|+|-||-.--|...|.++++ ..|-|+.+||...++-+||-|-..+||++-+++|.|-. | -|.|.+.
T Consensus 443 ~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDkIKShCyV~yss~eEA~atr~AlhnV~-WP~sNPK~L~adf~~~ 521 (718)
T KOG2416|consen 443 PSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDKIKSHCYVSYSSVEEAAATREALHNVQ-WPPSNPKHLIADFVRA 521 (718)
T ss_pred ccceEeeecccccchHHHHHHHHhhccCchHHHHHHHhhcceeEecccHHHHHHHHHHHhccc-cCCCCCceeEeeecch
Confidence 488899999999999999999999 56778899999999999999999999999999999863 2 6777744
No 141
>KOG1830 consensus Wiskott Aldrich syndrome proteins [Cytoskeleton]
Probab=90.35 E-value=9.7 Score=45.28 Aligned_cols=15 Identities=7% Similarity=0.179 Sum_probs=7.8
Q ss_pred cceEEEeccCceEEE
Q 001454 514 LEHFFFFPIKGFALV 528 (1075)
Q Consensus 514 Le~v~~~~~rgfAFV 528 (1075)
++.++||.+.+|=|=
T Consensus 145 k~gLkfYTdPsyFFD 159 (518)
T KOG1830|consen 145 KDGLKFYTDPSYFFD 159 (518)
T ss_pred cccceeecCcHHHHH
Confidence 345556655555443
No 142
>KOG4672 consensus Uncharacterized conserved low complexity protein [Function unknown]
Probab=89.96 E-value=1.5 Score=51.38 Aligned_cols=11 Identities=18% Similarity=0.199 Sum_probs=4.4
Q ss_pred CccccCCCCCC
Q 001454 844 TPLAQIQGAPM 854 (1075)
Q Consensus 844 tPLAQpQgpPa 854 (1075)
++.++++++..
T Consensus 315 ~~ps~~~~a~~ 325 (487)
T KOG4672|consen 315 IHPSTFAGAAA 325 (487)
T ss_pred CCccccccccc
Confidence 33344444333
No 143
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=89.39 E-value=0.56 Score=52.93 Aligned_cols=50 Identities=18% Similarity=0.321 Sum_probs=42.6
Q ss_pred CHHHHHHHhhccCCcceEEEeccCce-------EEEEecCHHHHHHHHHhhcCCcee
Q 001454 500 SEAHIRFQIDRFGPLEHFFFFPIKGF-------ALVEYINIIDAIRAREYIRNHFSW 549 (1075)
Q Consensus 500 te~dL~~~F~~fG~Le~v~~~~~rgf-------AFVeF~~i~DAv~A~~~L~G~~~~ 549 (1075)
-|+++.++-++||.+.+|.+|-..++ -||+|++.+.|+.|+=.|+|...+
T Consensus 299 lede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFG 355 (378)
T KOG1996|consen 299 LEDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFG 355 (378)
T ss_pred HHHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceec
Confidence 45667788999999999999765554 599999999999999999998765
No 144
>PF15449 Retinal: Retinal protein
Probab=89.29 E-value=7.1 Score=50.68 Aligned_cols=31 Identities=19% Similarity=0.277 Sum_probs=19.4
Q ss_pred HHHHHHHhcCccccccccccceeeeeceeec
Q 001454 168 LLAACFELFNPSVLEGIHKGQYFFSQITSRF 198 (1075)
Q Consensus 168 ~l~acf~l~~s~~~e~~~~~~~~~~q~t~~~ 198 (1075)
.|.-|||-+|----|-.+.|--+|.-+..+|
T Consensus 227 fl~l~feEinqll~ei~~dGe~ll~ev~~~l 257 (1287)
T PF15449_consen 227 FLLLRFEEINQLLGEIAKDGEVLLKEVGGDL 257 (1287)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 4667888777665455555777766555443
No 145
>PLN03121 nucleic acid binding protein; Provisional
Probab=89.26 E-value=0.47 Score=52.35 Aligned_cols=62 Identities=10% Similarity=0.026 Sum_probs=53.2
Q ss_pred ceEEEccCCCchhHHHHHHhhhcccccCCcee-ecCCCCCcccccccCHHHHHHHHHHHhhccc
Q 001454 573 FHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TDLSCEGALLMEFRTPEEATTAMAHLRQHRK 635 (1075)
Q Consensus 573 ~~lwVG~iss~~~keeLf~E~~k~~~kgp~~f-~dlser~~LpVEF~s~edA~~A~~~lr~~r~ 635 (1075)
..|||||++...++++|...|..+|.+..+.+ .+.+.+..++|+|++.++|..|+ .|.+...
T Consensus 6 ~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAl-lLnGa~l 68 (243)
T PLN03121 6 YTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAV-LLSGATI 68 (243)
T ss_pred eEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHH-hcCCCee
Confidence 67999999999999999999999888887754 66666789999999999999997 6777553
No 146
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=89.10 E-value=0.58 Score=54.49 Aligned_cols=143 Identities=13% Similarity=0.139 Sum_probs=92.7
Q ss_pred eEEeccCCCccCHHHHHHHhhccCCcceEEEec---------cCceEEEEecCHHHHHHHHHhhcCCceeEEEEeecC--
Q 001454 489 QLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP---------IKGFALVEYINIIDAIRAREYIRNHFSWRVKFMDVG-- 557 (1075)
Q Consensus 489 ~LWVGnL~~~vte~dL~~~F~~fG~Le~v~~~~---------~rgfAFVeF~~i~DAv~A~~~L~G~~~~RI~F~r~~-- 557 (1075)
-|-|.||.|++|.+++.-+|+..|+|+.+.+|+ -.-.|||-|.|..-+..|-+.-+-.++-|.-|-.+-
T Consensus 9 vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~p~~~ 88 (479)
T KOG4676|consen 9 VIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVRPYGD 88 (479)
T ss_pred eeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEEEecCC
Confidence 466899999999999999999999999999997 235799999999998888665554444454444331
Q ss_pred --C-----------CCccc----ccceec-------------------------------cccceEEEccCCCchhHHHH
Q 001454 558 --L-----------GTKGV----INGVAV-------------------------------GSCFHVYVGNIPNQWAKDEI 589 (1075)
Q Consensus 558 --~-----------g~~g~----~~g~~~-------------------------------~~s~~lwVG~iss~~~keeL 589 (1075)
+ ++-+. -+|+-- ..-+.++|+.+.+.|.-.|+
T Consensus 89 ~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~l~e~ 168 (479)
T KOG4676|consen 89 EVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAAILPES 168 (479)
T ss_pred CCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhhcchhh
Confidence 0 00000 011100 12577899998888887777
Q ss_pred HHhhhcccccCCceeecCCCC---CcccccccCHHHHHHHHHHHhhcc
Q 001454 590 LHESYKVVYKGPYMVTDLSCE---GALLMEFRTPEEATTAMAHLRQHR 634 (1075)
Q Consensus 590 f~E~~k~~~kgp~~f~dlser---~~LpVEF~s~edA~~A~~~lr~~r 634 (1075)
..=+... |.++....-++ -.--+||....-...|+..+.+.+
T Consensus 169 ~e~f~r~---Gev~ya~~ask~~s~~c~~sf~~qts~~halr~~gre~ 213 (479)
T KOG4676|consen 169 GESFERK---GEVSYAHTASKSRSSSCSHSFRKQTSSKHALRSHGRER 213 (479)
T ss_pred hhhhhhc---chhhhhhhhccCCCcchhhhHhhhhhHHHHHHhcchhh
Confidence 6655543 44443222222 222389977766666666555543
No 147
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=88.72 E-value=0.26 Score=54.58 Aligned_cols=64 Identities=19% Similarity=0.284 Sum_probs=55.5
Q ss_pred cCceEEeccCCCccCHHHHHHHhhccCCcceEEEeccCce------------------EEEEecCHHHHHHHHHhhcCCc
Q 001454 486 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGF------------------ALVEYINIIDAIRAREYIRNHF 547 (1075)
Q Consensus 486 ~s~~LWVGnL~~~vte~dL~~~F~~fG~Le~v~~~~~rgf------------------AFVeF~~i~DAv~A~~~L~G~~ 547 (1075)
.+.-+|+++|+|...-..|++.|+.||.|..|.+.+..-+ ..|||.+-+.|.+-.+.|+|+.
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 4566899999999999999999999999999999774333 4689999999999999999987
Q ss_pred ee
Q 001454 548 SW 549 (1075)
Q Consensus 548 ~~ 549 (1075)
++
T Consensus 153 Ig 154 (278)
T KOG3152|consen 153 IG 154 (278)
T ss_pred cC
Confidence 64
No 148
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=87.84 E-value=0.68 Score=47.54 Aligned_cols=64 Identities=16% Similarity=0.178 Sum_probs=47.9
Q ss_pred ccceEEEccCCCchhHHHHHHhhhcccccCCcee----ecCCCCCcccccccCHHHHHHHHHHHhhcc
Q 001454 571 SCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV----TDLSCEGALLMEFRTPEEATTAMAHLRQHR 634 (1075)
Q Consensus 571 ~s~~lwVG~iss~~~keeLf~E~~k~~~kgp~~f----~dlser~~LpVEF~s~edA~~A~~~lr~~r 634 (1075)
.--.|+|-+|......|+|-.-|--++.+-.+-. ...--+++++|||++.++|.+|+..+++..
T Consensus 71 EGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ 138 (170)
T KOG0130|consen 71 EGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAE 138 (170)
T ss_pred eeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchh
Confidence 4568999999999999988665554443222211 224568999999999999999999999755
No 149
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=87.03 E-value=0.96 Score=50.92 Aligned_cols=144 Identities=13% Similarity=0.100 Sum_probs=101.0
Q ss_pred cCceEEeccCCCccCHHHHHHHhhccCCcc-eEEE-----eccCceEEEEecCHHHHHHHHHhhcCCcee-EEEEeecC-
Q 001454 486 ASKQLWLGSFGPEASEAHIRFQIDRFGPLE-HFFF-----FPIKGFALVEYINIIDAIRAREYIRNHFSW-RVKFMDVG- 557 (1075)
Q Consensus 486 ~s~~LWVGnL~~~vte~dL~~~F~~fG~Le-~v~~-----~~~rgfAFVeF~~i~DAv~A~~~L~G~~~~-RI~F~r~~- 557 (1075)
..+.+++|++.-++.+.+....|..+|..- .... .+.++|.+|.|+..+.+..|+......... +.-+.+..
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~ 166 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNT 166 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcccc
Confidence 456789999999999999999999999544 3333 359999999999999999999888765433 11111110
Q ss_pred ---CCCcccccceeccccceEE-EccCCCchhHHHHHHhhhcccccCCceeec----CCCCCcccccccCHHHHHHHHHH
Q 001454 558 ---LGTKGVINGVAVGSCFHVY-VGNIPNQWAKDEILHESYKVVYKGPYMVTD----LSCEGALLMEFRTPEEATTAMAH 629 (1075)
Q Consensus 558 ---~g~~g~~~g~~~~~s~~lw-VG~iss~~~keeLf~E~~k~~~kgp~~f~d----lser~~LpVEF~s~edA~~A~~~ 629 (1075)
+-.+....+...+++..+| ||+.+-...+|+|..++...+.+-.+.+.. ...+..++++|.+..++..++..
T Consensus 167 ~~~~~~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~ 246 (285)
T KOG4210|consen 167 RRGLRPKNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND 246 (285)
T ss_pred cccccccchhcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc
Confidence 1011111122234566666 999999999999997777766555444423 55666779999999888888664
No 150
>PRK15313 autotransport protein MisL; Provisional
Probab=87.00 E-value=0.98 Score=57.59 Aligned_cols=10 Identities=20% Similarity=0.677 Sum_probs=5.6
Q ss_pred ccCceEEecc
Q 001454 485 SASKQLWLGS 494 (1075)
Q Consensus 485 ~~s~~LWVGn 494 (1075)
..+++++||+
T Consensus 181 ~~~~~i~~g~ 190 (955)
T PRK15313 181 TGSANIYVGD 190 (955)
T ss_pred cccceEEEcC
Confidence 3455666664
No 151
>PLN03213 repressor of silencing 3; Provisional
Probab=86.34 E-value=0.91 Score=54.14 Aligned_cols=62 Identities=10% Similarity=0.111 Sum_probs=50.7
Q ss_pred ccceEEEccCCCchhHHHHHHhhhcccccCCceeecCCCCCcccccccCH--HHHHHHHHHHhh
Q 001454 571 SCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTP--EEATTAMAHLRQ 632 (1075)
Q Consensus 571 ~s~~lwVG~iss~~~keeLf~E~~k~~~kgp~~f~dlser~~LpVEF~s~--edA~~A~~~lr~ 632 (1075)
....|||||++-.+..|+|..=|..+|.+..+.|.--..|+++||||.+. +++..|+..|++
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNG 72 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNG 72 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcC
Confidence 45789999999999999998888888876666554334499999999887 678888888777
No 152
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=86.27 E-value=1.5 Score=46.58 Aligned_cols=58 Identities=19% Similarity=0.093 Sum_probs=44.2
Q ss_pred cCHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhc--CCcee----EEEEeec
Q 001454 499 ASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIR--NHFSW----RVKFMDV 556 (1075)
Q Consensus 499 vte~dL~~~F~~fG~Le~v~~~~~rgfAFVeF~~i~DAv~A~~~L~--G~~~~----RI~F~r~ 556 (1075)
...+.|+++|..|+++-+|...+.=+=..|.|.+.++|++|+..|+ |..+. |+.|+..
T Consensus 7 ~~~~~l~~l~~~~~~~~~~~~L~sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~ 70 (184)
T PF04847_consen 7 DNLAELEELFSTYDPPVQFSPLKSFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQP 70 (184)
T ss_dssp --HHHHHHHHHTT-SS-EEEEETTTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----
T ss_pred hhHHHHHHHHHhcCCceEEEEcCCCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccc
Confidence 4568999999999999999999988889999999999999999999 66543 7888755
No 153
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=86.15 E-value=0.49 Score=53.17 Aligned_cols=71 Identities=13% Similarity=0.106 Sum_probs=60.5
Q ss_pred cCceEEeccCCCccCHHHHHHHhhccCCcceEEEe------ccCceEEEEecCHHHHHHHHHhhcCCcee----EEEEee
Q 001454 486 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF------PIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMD 555 (1075)
Q Consensus 486 ~s~~LWVGnL~~~vte~dL~~~F~~fG~Le~v~~~------~~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~r 555 (1075)
...-+.||++.-+++++||...|..+|.|.++++- ..+|||||.|.+..++..|+.. ++..+. ++++.+
T Consensus 184 s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 262 (285)
T KOG4210|consen 184 SDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEEDE 262 (285)
T ss_pred cccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccCC
Confidence 33444599999999999999999999999999983 2789999999999999999998 777654 688887
Q ss_pred cC
Q 001454 556 VG 557 (1075)
Q Consensus 556 ~~ 557 (1075)
+.
T Consensus 263 ~~ 264 (285)
T KOG4210|consen 263 PR 264 (285)
T ss_pred CC
Confidence 64
No 154
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=84.65 E-value=0.63 Score=50.87 Aligned_cols=59 Identities=20% Similarity=0.365 Sum_probs=41.9
Q ss_pred ccceEEEccCCCchhHHHHHHhhhcccccCCc-------eeecCCCCCcccccccCHHHHHHHHHHHhh
Q 001454 571 SCFHVYVGNIPNQWAKDEILHESYKVVYKGPY-------MVTDLSCEGALLMEFRTPEEATTAMAHLRQ 632 (1075)
Q Consensus 571 ~s~~lwVG~iss~~~keeLf~E~~k~~~kgp~-------~f~dlser~~LpVEF~s~edA~~A~~~lr~ 632 (1075)
--|.||||+.-..+.+. ++|. +|+-++.+ ......-|+..+|||+-.|||++||.+|+.
T Consensus 9 ~KrtlYVGGladeVtek-vLha--AFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMne 74 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEK-VLHA--AFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNE 74 (298)
T ss_pred cceeEEeccchHHHHHH-HHHh--ccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCch
Confidence 35899999998776644 4443 23334332 223344577899999999999999999987
No 155
>KOG0119 consensus Splicing factor 1/branch point binding protein (RRM superfamily) [RNA processing and modification]
Probab=84.41 E-value=18 Score=43.85 Aligned_cols=15 Identities=20% Similarity=0.242 Sum_probs=8.1
Q ss_pred cCHHHHHHHHHHHhh
Q 001454 618 RTPEEATTAMAHLRQ 632 (1075)
Q Consensus 618 ~s~edA~~A~~~lr~ 632 (1075)
|+++.|+++++.|-.
T Consensus 215 eki~~Ai~vienli~ 229 (554)
T KOG0119|consen 215 EKIKKAIAVIENLIQ 229 (554)
T ss_pred HHHHHHHHHHHHHHH
Confidence 455555555555444
No 156
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=84.15 E-value=0.48 Score=52.51 Aligned_cols=47 Identities=19% Similarity=0.321 Sum_probs=39.3
Q ss_pred HHHHHHhh-ccCCcceEEEec-----cCceEEEEecCHHHHHHHHHhhcCCce
Q 001454 502 AHIRFQID-RFGPLEHFFFFP-----IKGFALVEYINIIDAIRAREYIRNHFS 548 (1075)
Q Consensus 502 ~dL~~~F~-~fG~Le~v~~~~-----~rgfAFVeF~~i~DAv~A~~~L~G~~~ 548 (1075)
+|+..+|+ +||.|+++.+-. -+|=+||.|+..+||+.|+++|+|...
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~ 135 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWY 135 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccc
Confidence 45555666 999999997743 578899999999999999999998864
No 157
>KOG1922 consensus Rho GTPase effector BNI1 and related formins [Signal transduction mechanisms; Cytoskeleton]
Probab=83.38 E-value=8.4 Score=48.97 Aligned_cols=55 Identities=9% Similarity=0.097 Sum_probs=30.0
Q ss_pred CCCCccchhcHHHHHhhcccc------ceEeecc---hhhhHHHHHhhcCCchhhccccccCCC
Q 001454 1002 SPGDHKGFQDFVSYLKQRECA------GVIKIPA---VKSIWARLMFILPYSQDICSMLSIAPN 1056 (1075)
Q Consensus 1002 s~~D~K~fqdFiifL~Q~~ca------gviKl~~---v~s~~krlL~llPes~evcsmLsla~d 1056 (1075)
...|.+..|++.+.|...+-- .+..++. ....|+.++...|..+|.-....+..+
T Consensus 464 ~v~~~r~~~n~~ill~sl~~~~~~~~~a~~~~~~~~~~~~~l~~l~~~~pt~~E~~~l~~~~~~ 527 (833)
T KOG1922|consen 464 KVLDPRRPQNIAILLSSLNMPTEDIPQALLELDDSVLGLDQLEKLLKFAPTKEEETKLKEESGD 527 (833)
T ss_pred cccCCCCccceeeehhhcCCchHHHHHHHhccCccccCHHHHHHHHccCCChhHHHHHHhhcCC
Confidence 356777777777666544310 1111111 125677777777777666665554433
No 158
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=82.65 E-value=15 Score=48.54 Aligned_cols=78 Identities=17% Similarity=0.039 Sum_probs=40.9
Q ss_pred echhhhhccCCchHHHHhhhc-ccCC-------Cchhh-hhhhH----HHHHhHHHHHHhcC----chHHHHHHH---Hh
Q 001454 116 TVDKEITKMLDSDEVFLGLKK-KFSD-------EDESS-LIKLS----KFRLLSLLQIFFSS----PKNLLAACF---EL 175 (1075)
Q Consensus 116 ~~~~~~~~~~d~~e~~~~lk~-~~~~-------~~~~~-~~~l~----~~~~l~~l~~f~~~----p~~~l~acf---~l 175 (1075)
+|.+-.++.+||..++..++. |+-+ +-.-. +.||- .++..-|-+||... +-++|..|. ++
T Consensus 1085 ~gsr~pv~~ddpa~ltp~sg~pkl~gtat~~~g~~pr~~~~klee~Rkrql~erl~ri~~~~APvyg~e~l~~c~lp~e~ 1164 (1958)
T KOG0391|consen 1085 LGSRPPVGGDDPAPLTPQSGVPKLVGTATLAVGEPPRAIGGKLEEERKRQLKERLDRIYLVNAPVYGRELLRICALPSEG 1164 (1958)
T ss_pred hccCCCCCCCCccccccccCCCCCcchhhhccCCCccccccchhhHHHHHHHHHHHHHhhccCcccchhhhhhhccchhh
Confidence 467778888888888887753 3322 11111 12332 23345566677653 667777774 33
Q ss_pred cCccccccccccceeeee
Q 001454 176 FNPSVLEGIHKGQYFFSQ 193 (1075)
Q Consensus 176 ~~s~~~e~~~~~~~~~~q 193 (1075)
+..--.|.+.+-.-++.+
T Consensus 1165 i~p~~~ea~~e~~l~~~r 1182 (1958)
T KOG0391|consen 1165 IVPWRSEAPSELMLTLCR 1182 (1958)
T ss_pred hccccccCchhhhhhHHH
Confidence 333333444443333333
No 159
>KOG2236 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.56 E-value=6.1 Score=47.28 Aligned_cols=14 Identities=43% Similarity=0.634 Sum_probs=6.3
Q ss_pred cCCcCCCCCCCCCc
Q 001454 299 EGSEVDSDEDDSDP 312 (1075)
Q Consensus 299 e~~~~~~~~~~s~~ 312 (1075)
|+-.+|.+.|+.++
T Consensus 82 e~~~~~~~~d~vd~ 95 (483)
T KOG2236|consen 82 EDGSVDQPDDLVDP 95 (483)
T ss_pred ccCcccccccccch
Confidence 34444444444444
No 160
>PRK09752 adhesin; Provisional
Probab=81.92 E-value=1.3 Score=57.56 Aligned_cols=11 Identities=18% Similarity=0.087 Sum_probs=7.3
Q ss_pred heeeeccceee
Q 001454 39 VVIYMHNSSVA 49 (1075)
Q Consensus 39 v~i~m~~~~~a 49 (1075)
+.=+|..|++|
T Consensus 50 ~~~~~~~~~~~ 60 (1250)
T PRK09752 50 LSGITQDWSIA 60 (1250)
T ss_pred ccCCcccceec
Confidence 44567778765
No 161
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=81.79 E-value=0.94 Score=48.56 Aligned_cols=62 Identities=23% Similarity=0.277 Sum_probs=43.1
Q ss_pred ccceEEEccCCCchhHHHHHHhhhcccccCCceeecC-CCCCcccccccCHHHHHHHHHHHhh
Q 001454 571 SCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDL-SCEGALLMEFRTPEEATTAMAHLRQ 632 (1075)
Q Consensus 571 ~s~~lwVG~iss~~~keeLf~E~~k~~~kgp~~f~dl-ser~~LpVEF~s~edA~~A~~~lr~ 632 (1075)
.++.|||||.|..+-..||..=|-|.+.+..+..+.- ..-..++|||+.+-||--|+....+
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdG 67 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDG 67 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccc
Confidence 4889999999998766666665555444333333221 1235688999999999999887665
No 162
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.53 E-value=31 Score=45.17 Aligned_cols=26 Identities=4% Similarity=0.120 Sum_probs=13.4
Q ss_pred cceEEEccCCCch---hHHHHHHhhhccc
Q 001454 572 CFHVYVGNIPNQW---AKDEILHESYKVV 597 (1075)
Q Consensus 572 s~~lwVG~iss~~---~keeLf~E~~k~~ 597 (1075)
+.+|-+|.+.+.+ .+++-+.|++...
T Consensus 495 s~alitgd~~~aV~~cl~~~~~a~AliiA 523 (1049)
T KOG0307|consen 495 SEALITGDFKSAVELCLEANKMADALIIA 523 (1049)
T ss_pred HHHHHhccHHHHHHHHHhhhHHHHHHHHH
Confidence 5566666666542 3444444444433
No 163
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=80.32 E-value=4.4 Score=50.41 Aligned_cols=68 Identities=16% Similarity=0.099 Sum_probs=59.0
Q ss_pred eEEeccCCCccCHHHHHHHhhccCCcc-eEEEec-----cCceEEEEecCHHHHHHHHHhhcCCcee-EEEEeec
Q 001454 489 QLWLGSFGPEASEAHIRFQIDRFGPLE-HFFFFP-----IKGFALVEYINIIDAIRAREYIRNHFSW-RVKFMDV 556 (1075)
Q Consensus 489 ~LWVGnL~~~vte~dL~~~F~~fG~Le-~v~~~~-----~rgfAFVeF~~i~DAv~A~~~L~G~~~~-RI~F~r~ 556 (1075)
-|=+-|++-+|+-+||.+.|.-|-.+- +|.+.+ +-|=|.|.|++.++|.+|...|+|+.+. |+-++|.
T Consensus 869 V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 869 VLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred EEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 788999999999999999999999987 566543 5678999999999999999999999988 6666553
No 164
>KOG0566 consensus Inositol-1,4,5-triphosphate 5-phosphatase (synaptojanin), INP51/INP52/INP53 family [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.89 E-value=10 Score=48.91 Aligned_cols=48 Identities=15% Similarity=0.198 Sum_probs=28.0
Q ss_pred hccCCCceEeechh--hhhccCCc---------hHHHHhhhcccCCCc-----hhhhhhhHHHH
Q 001454 106 SSFDGKDIIHTVDK--EITKMLDS---------DEVFLGLKKKFSDED-----ESSLIKLSKFR 153 (1075)
Q Consensus 106 ~~f~gkdi~~~~~~--~~~~~~d~---------~e~~~~lk~~~~~~~-----~~~~~~l~~~~ 153 (1075)
.-.++-|||++.+. +++.|+.. .+-+.+||+-+++++ .--+++..|.|
T Consensus 94 ~ki~~vdf~~l~~~~~dFi~l~~~~~~~~~~~~~~~~s~LrkLLssGsFYfS~~fDlt~~~q~r 157 (1080)
T KOG0566|consen 94 GKIEDVDFYSLTNTVWDFISLERSSSPEDTLYPKHPCSELRKLLSSGSFYFSSDFDLTCFAQNR 157 (1080)
T ss_pred ccccceeEEEeccchhhheecccCCCCccccccccchHHHHHHhhCCcEEEeeccchhhHHHhc
Confidence 34566777777777 66666532 256677777666653 12334555555
No 165
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=78.94 E-value=42 Score=44.81 Aligned_cols=15 Identities=33% Similarity=0.585 Sum_probs=10.3
Q ss_pred cceeeeecCCcc-ccc
Q 001454 468 SQIVWYFDEDPA-AMD 482 (1075)
Q Consensus 468 ~~~~~~~~g~~~-a~d 482 (1075)
.|+|-|.|.|-- +||
T Consensus 1347 ADTVvFYDsDwNPtMD 1362 (1958)
T KOG0391|consen 1347 ADTVVFYDSDWNPTMD 1362 (1958)
T ss_pred CceEEEecCCCCchhh
Confidence 678888888742 455
No 166
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=78.64 E-value=4 Score=39.71 Aligned_cols=48 Identities=21% Similarity=0.326 Sum_probs=36.5
Q ss_pred cCCCccCHHHHHHHhhccCCcceEE-------------EeccCceEEEEecCHHHHHHHHHh
Q 001454 494 SFGPEASEAHIRFQIDRFGPLEHFF-------------FFPIKGFALVEYINIIDAIRAREY 542 (1075)
Q Consensus 494 nL~~~vte~dL~~~F~~fG~Le~v~-------------~~~~rgfAFVeF~~i~DAv~A~~~ 542 (1075)
..++. ....+.++|++||.|-+.. .....+.--|.|.+..+|.+|++.
T Consensus 13 Gfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~ 73 (100)
T PF05172_consen 13 GFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQK 73 (100)
T ss_dssp ---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTT
T ss_pred ccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHh
Confidence 34444 5678889999999987764 566999999999999999999864
No 167
>PF07174 FAP: Fibronectin-attachment protein (FAP); InterPro: IPR010801 This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix [].; GO: 0050840 extracellular matrix binding, 0005576 extracellular region
Probab=76.80 E-value=18 Score=40.97 Aligned_cols=19 Identities=16% Similarity=0.378 Sum_probs=11.1
Q ss_pred eecceeccCcccceeeeecc
Q 001454 930 WQGALCKSGVHYCTIYAQRE 949 (1075)
Q Consensus 930 WqGsL~kSg~~yCtil~s~i 949 (1075)
|+-+. .+.+.|=..+++++
T Consensus 127 W~~Sd-a~~L~yG~alls~~ 145 (297)
T PF07174_consen 127 WVESD-ASHLDYGSALLSKQ 145 (297)
T ss_pred ccccc-cceeecceeeeccC
Confidence 55444 55566766666654
No 168
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.31 E-value=47 Score=43.65 Aligned_cols=8 Identities=25% Similarity=0.322 Sum_probs=3.3
Q ss_pred ecCCcccc
Q 001454 474 FDEDPAAM 481 (1075)
Q Consensus 474 ~~g~~~a~ 481 (1075)
+||..+++
T Consensus 361 ~~Gasf~f 368 (1049)
T KOG0307|consen 361 LDGASFAF 368 (1049)
T ss_pred cccceeec
Confidence 34444433
No 169
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=75.56 E-value=2.7 Score=52.23 Aligned_cols=64 Identities=14% Similarity=0.140 Sum_probs=53.4
Q ss_pred ccceEEEccCCCchhHHHHHHhhhcccccCCcee-------ecCCCCCcccccccCHHHHHHHHHHHhhcc
Q 001454 571 SCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-------TDLSCEGALLMEFRTPEEATTAMAHLRQHR 634 (1075)
Q Consensus 571 ~s~~lwVG~iss~~~keeLf~E~~k~~~kgp~~f-------~dlser~~LpVEF~s~edA~~A~~~lr~~r 634 (1075)
...+|||||++++++.+.|+-.+..|+-+..+.+ ..-++++.-+|=|-+-.||-+||+.|++.-
T Consensus 173 ~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~i 243 (877)
T KOG0151|consen 173 QTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGII 243 (877)
T ss_pred cccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhccee
Confidence 5789999999999999999999887774443322 336788999999999999999999999954
No 170
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=74.17 E-value=7.9 Score=37.25 Aligned_cols=57 Identities=18% Similarity=0.221 Sum_probs=40.4
Q ss_pred eEEeccCCCccCHH----HHHHHhhccCC-cceEEEeccCceEEEEecCHHHHHHHHHhhcCCcee
Q 001454 489 QLWLGSFGPEASEA----HIRFQIDRFGP-LEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW 549 (1075)
Q Consensus 489 ~LWVGnL~~~vte~----dL~~~F~~fG~-Le~v~~~~~rgfAFVeF~~i~DAv~A~~~L~G~~~~ 549 (1075)
.|+|-||+.+..-. -|+.+++-||= +-+| ..+.|+|-|.+.+.|.+|.+.|+|..+.
T Consensus 4 ~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v----~~~tAilrF~~~~~A~RA~KRmegEdVf 65 (90)
T PF11608_consen 4 LLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV----SGGTAILRFPNQEFAERAQKRMEGEDVF 65 (90)
T ss_dssp EEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------TT-EEEEESSHHHHHHHHHHHTT--SS
T ss_pred EEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE----eCCEEEEEeCCHHHHHHHHHhhcccccc
Confidence 58999999986654 56778888874 3333 3699999999999999999999999876
No 171
>PF05518 Totivirus_coat: Totivirus coat protein; InterPro: IPR008871 This family of proteins contain the coat proteins of the Totiviruses.
Probab=73.91 E-value=35 Score=43.45 Aligned_cols=12 Identities=50% Similarity=0.866 Sum_probs=6.9
Q ss_pred HHHHhhhcccCC
Q 001454 129 EVFLGLKKKFSD 140 (1075)
Q Consensus 129 e~~~~lk~~~~~ 140 (1075)
|=|..|-+|+++
T Consensus 81 e~f~glarKysn 92 (759)
T PF05518_consen 81 ENFEGLARKYSN 92 (759)
T ss_pred HHHHHHHHHhcc
Confidence 445566666655
No 172
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=73.79 E-value=3.2 Score=46.46 Aligned_cols=59 Identities=20% Similarity=0.242 Sum_probs=48.5
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEEEe---c--cCceEEEEecCHHHHHHHHHhh
Q 001454 485 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF---P--IKGFALVEYINIIDAIRAREYI 543 (1075)
Q Consensus 485 ~~s~~LWVGnL~~~vte~dL~~~F~~fG~Le~v~~~---~--~rgfAFVeF~~i~DAv~A~~~L 543 (1075)
..-..|||-||.+.|+.+.|+..|++||+|+.-.++ + .-+=.+|+|.+.-.|..|.+..
T Consensus 29 a~~a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~ 92 (275)
T KOG0115|consen 29 AMHAELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRC 92 (275)
T ss_pred eccceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHh
Confidence 334789999999999999999999999999965543 2 3345699999999998888776
No 173
>KOG1985 consensus Vesicle coat complex COPII, subunit SEC24/subunit SFB2 [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.58 E-value=49 Score=42.53 Aligned_cols=16 Identities=19% Similarity=0.810 Sum_probs=12.0
Q ss_pred cccccccCCCCCCCCc
Q 001454 952 DICKYTHDISEPAEWP 967 (1075)
Q Consensus 952 dICkat~aisePs~WP 967 (1075)
++|...|.+++--.|.
T Consensus 244 NlC~~~NdvP~~f~~~ 259 (887)
T KOG1985|consen 244 NLCGRVNDVPDDFDWD 259 (887)
T ss_pred chhhhhcCCcHHhhcC
Confidence 5788888887776665
No 174
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=73.19 E-value=4.1 Score=42.93 Aligned_cols=61 Identities=18% Similarity=0.227 Sum_probs=44.9
Q ss_pred CceEEeccCCCccCHHHHHHHhhc-cCCc---ceEEE-e-------ccCceEEEEecCHHHHHHHHHhhcCCc
Q 001454 487 SKQLWLGSFGPEASEAHIRFQIDR-FGPL---EHFFF-F-------PIKGFALVEYINIIDAIRAREYIRNHF 547 (1075)
Q Consensus 487 s~~LWVGnL~~~vte~dL~~~F~~-fG~L---e~v~~-~-------~~rgfAFVeF~~i~DAv~A~~~L~G~~ 547 (1075)
..+|-|-+|+|+.||+++.+++.. +|.- ..|.. + +--+-|||.|.+.+|...=++.++|..
T Consensus 7 ~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~ 79 (176)
T PF03467_consen 7 GTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHV 79 (176)
T ss_dssp --EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEE
T ss_pred CceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcE
Confidence 458999999999999999998887 7766 33331 1 134669999999999999999999975
No 175
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=72.74 E-value=7.4 Score=47.78 Aligned_cols=10 Identities=30% Similarity=0.577 Sum_probs=4.6
Q ss_pred eeeeeeccee
Q 001454 926 LQYQWQGALC 935 (1075)
Q Consensus 926 v~~qWqGsL~ 935 (1075)
+.-+|+--+.
T Consensus 467 ~~~~w~~~~~ 476 (585)
T PRK14950 467 LEAIWKQILR 476 (585)
T ss_pred HHHHHHHHHH
Confidence 3344654443
No 176
>PF03276 Gag_spuma: Spumavirus gag protein; InterPro: IPR004957 The Spumavirus gag protein is a core viral polyprotein that undergoes specific enzymatic cleavages in vivo to yield the mature protein.; GO: 0019028 viral capsid
Probab=71.07 E-value=14 Score=45.31 Aligned_cols=17 Identities=35% Similarity=0.843 Sum_probs=8.1
Q ss_pred cccccccCCCCCccccccC
Q 001454 981 VKSTFTSTPPNKREVCRLV 999 (1075)
Q Consensus 981 VeslFa~tPP~kREVcrLv 999 (1075)
++-+|..+-++- -||++
T Consensus 294 IeGVfP~~tpd~--RcRvv 310 (582)
T PF03276_consen 294 IEGVFPTTTPDL--RCRVV 310 (582)
T ss_pred hcccccCCCccH--HHHHH
Confidence 455555544432 35554
No 177
>KOG0566 consensus Inositol-1,4,5-triphosphate 5-phosphatase (synaptojanin), INP51/INP52/INP53 family [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.82 E-value=37 Score=44.14 Aligned_cols=54 Identities=19% Similarity=0.195 Sum_probs=34.7
Q ss_pred hhhhccCCCceEeechhhhhccCCchHHHHhhhcccCCCch-hhhhhhHHHHHhH
Q 001454 103 FFISSFDGKDIIHTVDKEITKMLDSDEVFLGLKKKFSDEDE-SSLIKLSKFRLLS 156 (1075)
Q Consensus 103 ff~~~f~gkdi~~~~~~~~~~~~d~~e~~~~lk~~~~~~~~-~~~~~l~~~~~l~ 156 (1075)
|.+---...-|++|.|-++.+|-+..+.|-.|.....+++- .+...+++||-|-
T Consensus 83 ~l~~V~~~~sv~ki~~vdf~~l~~~~~dFi~l~~~~~~~~~~~~~~~~s~LrkLL 137 (1080)
T KOG0566|consen 83 FLAQVTGSESVGKIEDVDFYSLTNTVWDFISLERSSSPEDTLYPKHPCSELRKLL 137 (1080)
T ss_pred EEEEecCCceeccccceeEEEeccchhhheecccCCCCccccccccchHHHHHHh
Confidence 33333445568888888888888888777776665555532 3345666776553
No 178
>KOG1922 consensus Rho GTPase effector BNI1 and related formins [Signal transduction mechanisms; Cytoskeleton]
Probab=70.13 E-value=8.5 Score=48.93 Aligned_cols=7 Identities=14% Similarity=0.615 Sum_probs=3.0
Q ss_pred eeeeeec
Q 001454 926 LQYQWQG 932 (1075)
Q Consensus 926 v~~qWqG 932 (1075)
..+-|+.
T Consensus 397 k~l~wdk 403 (833)
T KOG1922|consen 397 KPLHWDK 403 (833)
T ss_pred CCccccc
Confidence 3444444
No 179
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=69.38 E-value=3.8 Score=48.63 Aligned_cols=23 Identities=22% Similarity=0.290 Sum_probs=12.5
Q ss_pred cceEEEccCCCc-hhHHHHHHhhh
Q 001454 572 CFHVYVGNIPNQ-WAKDEILHESY 594 (1075)
Q Consensus 572 s~~lwVG~iss~-~~keeLf~E~~ 594 (1075)
....=|+..+.. ..-|++..|.-
T Consensus 38 ~~~~~v~~~p~~i~Ayd~~i~~~l 61 (480)
T KOG2675|consen 38 ASAGDVAAVPPSIRAYDDLISEPL 61 (480)
T ss_pred ccccccccCchHHHHHHHHHHhHH
Confidence 344445565554 55666666543
No 180
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=69.15 E-value=12 Score=42.17 Aligned_cols=81 Identities=20% Similarity=0.133 Sum_probs=63.1
Q ss_pred HHHHHHHhhcCCcee----EEEEeecCCCCcccccceeccccceEEEccCCCchhHHHHHHhhhcccccC-CceeecCCC
Q 001454 535 DAIRAREYIRNHFSW----RVKFMDVGLGTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKG-PYMVTDLSC 609 (1075)
Q Consensus 535 DAv~A~~~L~G~~~~----RI~F~r~~~g~~g~~~g~~~~~s~~lwVG~iss~~~keeLf~E~~k~~~kg-p~~f~dlse 609 (1075)
=|.-|+++|+|+.+. ||+|+ ....|||=+.++.+.-|.++.++..|+-.+ .+.+.|-..
T Consensus 6 ~ae~ak~eLd~~~~~~~~lr~rfa----------------~~a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~ 69 (275)
T KOG0115|consen 6 LAEIAKRELDGRFPKGRSLRVRFA----------------MHAELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRG 69 (275)
T ss_pred HHHHHHHhcCCCCCCCCceEEEee----------------ccceEEEEecchhhhhHHHHHhhhhcCccchheeeecccc
Confidence 378899999999765 99988 237899999999999999999999888665 335555443
Q ss_pred CC--cccccccCHHHHHHHHHHHh
Q 001454 610 EG--ALLMEFRTPEEATTAMAHLR 631 (1075)
Q Consensus 610 r~--~LpVEF~s~edA~~A~~~lr 631 (1075)
+. .=.+||.+--.|..|++..+
T Consensus 70 k~t~eg~v~~~~k~~a~~a~rr~~ 93 (275)
T KOG0115|consen 70 KPTREGIVEFAKKPNARKAARRCR 93 (275)
T ss_pred cccccchhhhhcchhHHHHHHHhc
Confidence 33 33689988888888877664
No 181
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=68.89 E-value=5.1 Score=48.68 Aligned_cols=65 Identities=17% Similarity=0.093 Sum_probs=54.6
Q ss_pred cccceEEEccCCCchhHHHHHHhhhcccccCCceeecCCCCCcccccccCHHHHHHHHHHHhhccc
Q 001454 570 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHRK 635 (1075)
Q Consensus 570 ~~s~~lwVG~iss~~~keeLf~E~~k~~~kgp~~f~dlser~~LpVEF~s~edA~~A~~~lr~~r~ 635 (1075)
.+.+.|||=+++..++.++|+.-|.+.|.+-.+.. ....++-.+|||+.+-+|.+|++.||+++.
T Consensus 73 ~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~-t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~ 137 (549)
T KOG4660|consen 73 MNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRE-TPNKRGIVFVEFYDVRDAERALKALNRREI 137 (549)
T ss_pred CccceEEEEecCCcCCHHHHHHHHHhhcchhhhhc-ccccCceEEEEEeehHhHHHHHHHHHHHHh
Confidence 46889999999999999999999998885555432 345667788999999999999999999764
No 182
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=68.66 E-value=10 Score=46.33 Aligned_cols=78 Identities=13% Similarity=0.097 Sum_probs=61.0
Q ss_pred ecCCcccccccccCceEEeccCCCccCHHHHHHHhhc--cCCcceEEEeccCceEEEEecCHHHHHHHHHhh-------c
Q 001454 474 FDEDPAAMDIFSASKQLWLGSFGPEASEAHIRFQIDR--FGPLEHFFFFPIKGFALVEYINIIDAIRAREYI-------R 544 (1075)
Q Consensus 474 ~~g~~~a~dv~~~s~~LWVGnL~~~vte~dL~~~F~~--fG~Le~v~~~~~rgfAFVeF~~i~DAv~A~~~L-------~ 544 (1075)
+|.+---.--...-|-+-+-.|+....+++++.+|.- +=+.-+.-|+..-++ ||.|++..||-.|.++| |
T Consensus 162 vDekgekVrp~~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~nW-yITfesd~DAQqAykylreevk~fq 240 (684)
T KOG2591|consen 162 VDEKGEKVRPNHKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHNDNW-YITFESDTDAQQAYKYLREEVKTFQ 240 (684)
T ss_pred eccCccccccCcceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecCce-EEEeecchhHHHHHHHHHHHHHhhc
Confidence 4444434444566788999999999999999999975 566667777765554 99999999999998877 5
Q ss_pred CCcee-EEE
Q 001454 545 NHFSW-RVK 552 (1075)
Q Consensus 545 G~~~~-RI~ 552 (1075)
||.++ ||+
T Consensus 241 gKpImARIK 249 (684)
T KOG2591|consen 241 GKPIMARIK 249 (684)
T ss_pred Ccchhhhhh
Confidence 77777 876
No 183
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=67.62 E-value=6.7 Score=42.79 Aligned_cols=64 Identities=22% Similarity=0.223 Sum_probs=49.9
Q ss_pred ccceEEEccCCCchhHHHHHHhhhccc-ccCCcee----ecCCCCCcccccccCHHHHHHHHHHHhhcc
Q 001454 571 SCFHVYVGNIPNQWAKDEILHESYKVV-YKGPYMV----TDLSCEGALLMEFRTPEEATTAMAHLRQHR 634 (1075)
Q Consensus 571 ~s~~lwVG~iss~~~keeLf~E~~k~~-~kgp~~f----~dlser~~LpVEF~s~edA~~A~~~lr~~r 634 (1075)
..-.+||+.|+.-.-+-|++.-+..++ -+-.++. ..+.++|++||||++.|.|--|-+-|+...
T Consensus 48 ~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYL 116 (214)
T KOG4208|consen 48 IEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYL 116 (214)
T ss_pred CccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhh
Confidence 456789999999988889998888764 1112222 347899999999999999999888888744
No 184
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=67.06 E-value=7.4 Score=44.49 Aligned_cols=62 Identities=13% Similarity=0.142 Sum_probs=53.6
Q ss_pred ccceEEEccCCCchhHHHHHHhhhcccccCCc-eeec---CCCCCcccccccCHHHHHHHHHHHhh
Q 001454 571 SCFHVYVGNIPNQWAKDEILHESYKVVYKGPY-MVTD---LSCEGALLMEFRTPEEATTAMAHLRQ 632 (1075)
Q Consensus 571 ~s~~lwVG~iss~~~keeLf~E~~k~~~kgp~-~f~d---lser~~LpVEF~s~edA~~A~~~lr~ 632 (1075)
+-+.|+||.++=..+..+|..||.+.+.+..+ .|.| .-.++++||||+..-|...|-++.-+
T Consensus 100 Py~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG 165 (335)
T KOG0113|consen 100 PYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADG 165 (335)
T ss_pred ccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccC
Confidence 78999999999999999999999999966655 4444 56899999999999999999888555
No 185
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=66.95 E-value=9.9 Score=42.53 Aligned_cols=64 Identities=16% Similarity=0.118 Sum_probs=52.2
Q ss_pred ccceEEEccCCCchhHHHHHHhhhcccccCCcee-e---cCCCCCcccccccCHHHHHHHHHHHhhcc
Q 001454 571 SCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-T---DLSCEGALLMEFRTPEEATTAMAHLRQHR 634 (1075)
Q Consensus 571 ~s~~lwVG~iss~~~keeLf~E~~k~~~kgp~~f-~---dlser~~LpVEF~s~edA~~A~~~lr~~r 634 (1075)
.++.|-|-+.|-....++|..=+..|+.+-.+-+ . ..-.++.+||=|++-|||++|++.|++..
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~g 255 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYG 255 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcc
Confidence 5777999999999999999777777665444422 2 26689999999999999999999999865
No 186
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=65.80 E-value=25 Score=41.17 Aligned_cols=57 Identities=18% Similarity=0.256 Sum_probs=41.8
Q ss_pred EEeccCCCccCHHHHHHHhhccCC--cceEEEe------ccCceEEEEecCHHHHHHHHHhhcCC
Q 001454 490 LWLGSFGPEASEAHIRFQIDRFGP--LEHFFFF------PIKGFALVEYINIIDAIRAREYIRNH 546 (1075)
Q Consensus 490 LWVGnL~~~vte~dL~~~F~~fG~--Le~v~~~------~~rgfAFVeF~~i~DAv~A~~~L~G~ 546 (1075)
+|||||-=-.|.+||.+....-|- +-+++|| .++|||+|-.....-.++-++.|.-+
T Consensus 83 ~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k 147 (498)
T KOG4849|consen 83 CYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTK 147 (498)
T ss_pred EEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccc
Confidence 799999999999999998877773 3355565 27888888877666556666655533
No 187
>KOG2893 consensus Zn finger protein [General function prediction only]
Probab=62.58 E-value=52 Score=36.96 Aligned_cols=7 Identities=14% Similarity=0.320 Sum_probs=3.4
Q ss_pred CCCCCCC
Q 001454 813 HQLPSNP 819 (1075)
Q Consensus 813 ~~lPs~~ 819 (1075)
.|++|..
T Consensus 119 ~~~~f~~ 125 (341)
T KOG2893|consen 119 QHFPFPG 125 (341)
T ss_pred ccCCCCC
Confidence 3455554
No 188
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=60.29 E-value=19 Score=42.00 Aligned_cols=9 Identities=22% Similarity=0.556 Sum_probs=3.8
Q ss_pred CCCCCCCCc
Q 001454 837 PFIPPSVTP 845 (1075)
Q Consensus 837 PfiP~s~tP 845 (1075)
|++=.+.+|
T Consensus 112 PYLh~W~~p 120 (365)
T KOG2391|consen 112 PYLHNWDPP 120 (365)
T ss_pred hhhccCCCc
Confidence 444444443
No 189
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=59.43 E-value=12 Score=43.32 Aligned_cols=62 Identities=11% Similarity=0.244 Sum_probs=50.5
Q ss_pred CceEEeccCCCccCHHHH------HHHhhccCCcceEEEec-------cCceE--EEEecCHHHHHHHHHhhcCCce
Q 001454 487 SKQLWLGSFGPEASEAHI------RFQIDRFGPLEHFFFFP-------IKGFA--LVEYINIIDAIRAREYIRNHFS 548 (1075)
Q Consensus 487 s~~LWVGnL~~~vte~dL------~~~F~~fG~Le~v~~~~-------~rgfA--FVeF~~i~DAv~A~~~L~G~~~ 548 (1075)
-+-+||-.|++-+..++. .+-|++||+|..+.+-+ --+-| |+.|-.-+||.+++...+|..+
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~ 190 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLL 190 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccc
Confidence 356799999999888883 57899999999998843 11234 9999999999999999999865
No 190
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=59.35 E-value=9 Score=45.69 Aligned_cols=56 Identities=14% Similarity=0.084 Sum_probs=44.4
Q ss_pred eEEEccCCCchhHHHHHHhhhcccccC--Cceeec--CCCCCcccccccCHHHHHHHHHH
Q 001454 574 HVYVGNIPNQWAKDEILHESYKVVYKG--PYMVTD--LSCEGALLMEFRTPEEATTAMAH 629 (1075)
Q Consensus 574 ~lwVG~iss~~~keeLf~E~~k~~~kg--p~~f~d--lser~~LpVEF~s~edA~~A~~~ 629 (1075)
+|||+++|...+.++|.++|+.|+.+. .+.++. .......+|||++.+++.+|+..
T Consensus 290 ~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A 349 (419)
T KOG0116|consen 290 GIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA 349 (419)
T ss_pred ceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc
Confidence 399999999999999999999999544 444444 22226779999999999988765
No 191
>KOG2236 consensus Uncharacterized conserved protein [Function unknown]
Probab=58.82 E-value=25 Score=42.38 Aligned_cols=12 Identities=25% Similarity=0.634 Sum_probs=6.3
Q ss_pred HHHHhhccCCcc
Q 001454 504 IRFQIDRFGPLE 515 (1075)
Q Consensus 504 L~~~F~~fG~Le 515 (1075)
|=.+|+-||++.
T Consensus 247 lG~I~EiFGpV~ 258 (483)
T KOG2236|consen 247 LGQIFEIFGPVK 258 (483)
T ss_pred chhhhhhhcccC
Confidence 444555556554
No 192
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=58.43 E-value=13 Score=41.97 Aligned_cols=141 Identities=13% Similarity=0.118 Sum_probs=100.7
Q ss_pred ccCceEEeccCCCccCHHH-H--HHHhhccCCcceEEEec-----cCceEEEEecCHHHHHHHHHhhcCCcee-E-EEEe
Q 001454 485 SASKQLWLGSFGPEASEAH-I--RFQIDRFGPLEHFFFFP-----IKGFALVEYINIIDAIRAREYIRNHFSW-R-VKFM 554 (1075)
Q Consensus 485 ~~s~~LWVGnL~~~vte~d-L--~~~F~~fG~Le~v~~~~-----~rgfAFVeF~~i~DAv~A~~~L~G~~~~-R-I~F~ 554 (1075)
..-=.+.+|++++.|..+- | ...|+.|-.|..-.+++ -+++||+.|+.-.--..+-..-.++.+. + ||-+
T Consensus 94 P~vf~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a 173 (290)
T KOG0226|consen 94 PAVFRPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDRPQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLA 173 (290)
T ss_pred cccccccccccccccCCCCCCcchhhhccchhhhhhhhhhcCCCccCcccccCcchhhhhhhhccccccccccCcceeec
Confidence 5556678889888877665 4 78899999988766543 6799999998655555555555555554 2 4433
Q ss_pred ecCCCCcccccceecc--------ccceEEEccCCCchhHHHHHHhhhcccccCCcee----ecCCCCCcccccccCHHH
Q 001454 555 DVGLGTKGVINGVAVG--------SCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV----TDLSCEGALLMEFRTPEE 622 (1075)
Q Consensus 555 r~~~g~~g~~~g~~~~--------~s~~lwVG~iss~~~keeLf~E~~k~~~kgp~~f----~dlser~~LpVEF~s~ed 622 (1075)
+- -+++. .-..|+-|-.++.+.+|-|-.-+.++-.+--.++ .-...+++=||-|.+++|
T Consensus 174 ~g---------tswedPsl~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad 244 (290)
T KOG0226|consen 174 AG---------TSWEDPSLAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPAD 244 (290)
T ss_pred cc---------cccCCcccccCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHH
Confidence 21 12332 3567899999999999888777777663333322 236778899999999999
Q ss_pred HHHHHHHHhhcc
Q 001454 623 ATTAMAHLRQHR 634 (1075)
Q Consensus 623 A~~A~~~lr~~r 634 (1075)
+..||+-|+++-
T Consensus 245 ~~rAmrem~gky 256 (290)
T KOG0226|consen 245 YVRAMREMNGKY 256 (290)
T ss_pred HHHHHHhhcccc
Confidence 999999999865
No 193
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=58.08 E-value=12 Score=43.42 Aligned_cols=65 Identities=17% Similarity=0.123 Sum_probs=55.4
Q ss_pred cceEEEccCCCchhHHHHHHhhhcccccCCceee--cCCCCCcccccccCHHHHHHHHHHHhhcccC
Q 001454 572 CFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT--DLSCEGALLMEFRTPEEATTAMAHLRQHRKS 636 (1075)
Q Consensus 572 s~~lwVG~iss~~~keeLf~E~~k~~~kgp~~f~--dlser~~LpVEF~s~edA~~A~~~lr~~r~e 636 (1075)
-|.|+|-||+=..-+-+|..=|.+||.+-.++|+ +-.+|+.=||-|++++||-+|-+-|.+...|
T Consensus 96 pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VE 162 (376)
T KOG0125|consen 96 PKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVE 162 (376)
T ss_pred CceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceee
Confidence 5899999999998888888888888877777654 4778999999999999999998888885544
No 194
>PF15449 Retinal: Retinal protein
Probab=55.33 E-value=50 Score=43.52 Aligned_cols=13 Identities=23% Similarity=0.552 Sum_probs=9.6
Q ss_pred eccCcccceeeee
Q 001454 935 CKSGVHYCTIYAQ 947 (1075)
Q Consensus 935 ~kSg~~yCtil~s 947 (1075)
.|-..|.|.|+|-
T Consensus 1136 aK~~~Nt~SIFCP 1148 (1287)
T PF15449_consen 1136 AKVSGNTCSIFCP 1148 (1287)
T ss_pred ccccCCccceecc
Confidence 3666689999883
No 195
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=53.69 E-value=29 Score=42.33 Aligned_cols=121 Identities=16% Similarity=0.212 Sum_probs=86.4
Q ss_pred eeeecCCccccc---ccccCceEEeccCCCccCHHHHHHHhh-ccCCcceEEEe------ccCceEEEEecCHHHHHHHH
Q 001454 471 VWYFDEDPAAMD---IFSASKQLWLGSFGPEASEAHIRFQID-RFGPLEHFFFF------PIKGFALVEYINIIDAIRAR 540 (1075)
Q Consensus 471 ~~~~~g~~~a~d---v~~~s~~LWVGnL~~~vte~dL~~~F~-~fG~Le~v~~~------~~rgfAFVeF~~i~DAv~A~ 540 (1075)
=|.+.-.-+.+| .+-+.|+++||.|+.-++..||...|+ -||-+.-+-+. .++|-+=|.|.|-.-=++|+
T Consensus 351 PW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AI 430 (520)
T KOG0129|consen 351 PWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAI 430 (520)
T ss_pred eeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHH
Confidence 376655555555 456799999999999999999999999 89999988873 27999999999988888887
Q ss_pred HhhcCCceeEEEEeecCCCCcccccceeccccceEEEccCCCchhHHHHHHhhhccc---ccCCceeecCCCCCcccccc
Q 001454 541 EYIRNHFSWRVKFMDVGLGTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVV---YKGPYMVTDLSCEGALLMEF 617 (1075)
Q Consensus 541 ~~L~G~~~~RI~F~r~~~g~~g~~~g~~~~~s~~lwVG~iss~~~keeLf~E~~k~~---~kgp~~f~dlser~~LpVEF 617 (1075)
.+ +...|+=.|. .|.| .|.+.+-+|++.+|....- +++|+ =.++.-..+|
T Consensus 431 sa----rFvql~h~d~---------------~KRV---EIkPYv~eDq~CdeC~g~~c~~q~aPf-----FC~n~~C~QY 483 (520)
T KOG0129|consen 431 SA----RFVQLDHTDI---------------DKRV---EIKPYVMEDQLCDECGGRRCGGQFAPF-----FCRNATCFQY 483 (520)
T ss_pred hh----heEEEecccc---------------ceee---eecceeccccchhhhcCeeccCccCCc-----ccCCccHHhh
Confidence 65 1112221111 2222 3677888999999998733 56664 2355666666
Q ss_pred c
Q 001454 618 R 618 (1075)
Q Consensus 618 ~ 618 (1075)
+
T Consensus 484 Y 484 (520)
T KOG0129|consen 484 Y 484 (520)
T ss_pred h
Confidence 5
No 196
>KOG0119 consensus Splicing factor 1/branch point binding protein (RRM superfamily) [RNA processing and modification]
Probab=53.32 E-value=1.8e+02 Score=35.90 Aligned_cols=22 Identities=23% Similarity=0.259 Sum_probs=10.2
Q ss_pred cccccCHHHHHHHHHHHhhccc
Q 001454 614 LMEFRTPEEATTAMAHLRQHRK 635 (1075)
Q Consensus 614 pVEF~s~edA~~A~~~lr~~r~ 635 (1075)
+|.=++.|-...|.+-++.--.
T Consensus 208 ~Isadt~eki~~Ai~vienli~ 229 (554)
T KOG0119|consen 208 LISADTQEKIKKAIAVIENLIQ 229 (554)
T ss_pred EEecchHHHHHHHHHHHHHHHH
Confidence 3444555555555444444433
No 197
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=53.11 E-value=35 Score=43.30 Aligned_cols=51 Identities=22% Similarity=0.411 Sum_probs=34.8
Q ss_pred CceEEeccCCCcc-------CHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHH
Q 001454 487 SKQLWLGSFGPEA-------SEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRARE 541 (1075)
Q Consensus 487 s~~LWVGnL~~~v-------te~dL~~~F~~fG~Le~v~~~~~rgfAFVeF~~i~DAv~A~~ 541 (1075)
|---||-.|-|+- .|..+..+.++-|==|+|++.|. ||| ||+.-|--.-+-
T Consensus 579 c~P~YIR~IKPNeTK~pnD~ee~~V~HQveYLGLqENiRvRRA-GfA---YRr~F~kF~qRy 636 (1106)
T KOG0162|consen 579 CQPHYIRCIKPNETKSPNDWEESRVKHQVEYLGLQENIRVRRA-GFA---YRRAFDKFAQRY 636 (1106)
T ss_pred cCcceeEeeCCCCCCCCccHHHHHHHHHHHhcchhhheeehhh-hhH---HHHHHHHHHHHh
Confidence 3344777666554 46788899999999999999764 777 455555444333
No 198
>PF01690 PLRV_ORF5: Potato leaf roll virus readthrough protein; InterPro: IPR002929 This family consists mainly of the Potato leafroll virus (PLrV) read through protein otherwise known as the minor capsid protein. This is generated via a readthrough of open reading frame 3, the coat protein, allowing transcription of open reading frame 5 to give an extended coat protein with a large C-terminal addition or read through domain []. The read through protein is essential for the circulative aphid transmission of PLrV [] and Beet western yellows virus []. The N-terminal region of the luteovirus readthrough domain determines virus binding to Buchnera GroEL and is essential for virus persistence in the aphid [].; GO: 0019028 viral capsid
Probab=51.12 E-value=16 Score=44.09 Aligned_cols=14 Identities=14% Similarity=0.109 Sum_probs=5.0
Q ss_pred cccCCCCCcccccc
Q 001454 985 FTSTPPNKREVCRL 998 (1075)
Q Consensus 985 Fa~tPP~kREVcrL 998 (1075)
|....+.+..-+.|
T Consensus 185 Fhl~~~~~~~~f~l 198 (465)
T PF01690_consen 185 FHLEATGDDASFFL 198 (465)
T ss_pred EEEEecCCCceEEE
Confidence 33333333333333
No 199
>PF03276 Gag_spuma: Spumavirus gag protein; InterPro: IPR004957 The Spumavirus gag protein is a core viral polyprotein that undergoes specific enzymatic cleavages in vivo to yield the mature protein.; GO: 0019028 viral capsid
Probab=50.37 E-value=70 Score=39.53 Aligned_cols=6 Identities=33% Similarity=0.634 Sum_probs=2.3
Q ss_pred CCCCcc
Q 001454 683 FGSPHT 688 (1075)
Q Consensus 683 fGei~r 688 (1075)
||-+..
T Consensus 104 ~GPLan 109 (582)
T PF03276_consen 104 FGPLAN 109 (582)
T ss_pred cCccCC
Confidence 443333
No 200
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=49.68 E-value=64 Score=31.23 Aligned_cols=62 Identities=18% Similarity=0.184 Sum_probs=45.4
Q ss_pred eEEeccCCCccCHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhcCCceeEEE
Q 001454 489 QLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSWRVK 552 (1075)
Q Consensus 489 ~LWVGnL~~~vte~dL~~~F~~fG~Le~v~~~~~rgfAFVeF~~i~DAv~A~~~L~G~~~~RI~ 552 (1075)
+++-=..+..=-..||..+|+.||.|.==|+ +-.-|||...+.+.|..|+..+.=...++|.
T Consensus 10 HVFhltFPkeWK~~DI~qlFspfG~I~VsWi--~dTSAfV~l~~r~~~~~v~~~~~~~~~y~i~ 71 (87)
T PF08675_consen 10 HVFHLTFPKEWKTSDIYQLFSPFGQIYVSWI--NDTSAFVALHNRDQAKVVMNTLKKNSSYRIQ 71 (87)
T ss_dssp CEEEEE--TT--HHHHHHHCCCCCCEEEEEE--CTTEEEEEECCCHHHHHHHHHHTT-SSSEEE
T ss_pred eEEEEeCchHhhhhhHHHHhccCCcEEEEEE--cCCcEEEEeecHHHHHHHHHHhccCCceEEE
Confidence 3333337777888999999999999876666 4478999999999999999999765555654
No 201
>PF15324 TALPID3: Hedgehog signalling target
Probab=47.05 E-value=3.3e+02 Score=36.51 Aligned_cols=18 Identities=17% Similarity=0.368 Sum_probs=11.3
Q ss_pred chhhhhccCCchHHHHhh
Q 001454 117 VDKEITKMLDSDEVFLGL 134 (1075)
Q Consensus 117 ~~~~~~~~~d~~e~~~~l 134 (1075)
|.+.+.|||..+.-+...
T Consensus 93 VselL~KLQEtDkqLqrv 110 (1252)
T PF15324_consen 93 VSELLNKLQETDKQLQRV 110 (1252)
T ss_pred HHHHHHHhhhhhcchhhh
Confidence 455666777776666554
No 202
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=46.47 E-value=8.5 Score=42.53 Aligned_cols=73 Identities=12% Similarity=-0.024 Sum_probs=49.6
Q ss_pred ccccceEEEccCCCchhHHHHHHhhhccc----ccCCceeecCCCCCcccccccCHHHHHHHHHHHhhcccC--CCCCCC
Q 001454 569 VGSCFHVYVGNIPNQWAKDEILHESYKVV----YKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHRKS--RSNYLP 642 (1075)
Q Consensus 569 ~~~s~~lwVG~iss~~~keeLf~E~~k~~----~kgp~~f~dlser~~LpVEF~s~edA~~A~~~lr~~r~e--rS~~~~ 642 (1075)
+-.-+.||||+..+.++ |||+.|+-..+ +.+.-...|...+ .++|+|.+-.-+.=||.-|++-+.+ ..++..
T Consensus 6 ae~drtl~v~n~~~~v~-eelL~ElfiqaGPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~ 83 (267)
T KOG4454|consen 6 AEMDRTLLVQNMYSGVS-EELLSELFIQAGPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTL 83 (267)
T ss_pred cchhhHHHHHhhhhhhh-HHHHHHHhhccCceEEEeCCCCccCCCc-eeeeecccccchhhhhhhcccchhccchhhccc
Confidence 34678999999998875 55666655422 2222233444444 7999999999999999999987653 355555
Q ss_pred C
Q 001454 643 P 643 (1075)
Q Consensus 643 r 643 (1075)
|
T Consensus 84 r 84 (267)
T KOG4454|consen 84 R 84 (267)
T ss_pred c
Confidence 5
No 203
>PHA03378 EBNA-3B; Provisional
Probab=46.14 E-value=3e+02 Score=35.31 Aligned_cols=19 Identities=11% Similarity=-0.062 Sum_probs=9.1
Q ss_pred cCCCCCcccccccCHHHHH
Q 001454 606 DLSCEGALLMEFRTPEEAT 624 (1075)
Q Consensus 606 dlser~~LpVEF~s~edA~ 624 (1075)
+.+....=++-|..-.|+.
T Consensus 390 ~~etv~~RP~vFlr~~~~k 408 (991)
T PHA03378 390 DPPTVYGRPKVFARKADLK 408 (991)
T ss_pred CCCcccCCCceeeechhhh
Confidence 3444445555554444443
No 204
>PF05518 Totivirus_coat: Totivirus coat protein; InterPro: IPR008871 This family of proteins contain the coat proteins of the Totiviruses.
Probab=46.11 E-value=2e+02 Score=37.16 Aligned_cols=18 Identities=22% Similarity=0.285 Sum_probs=9.2
Q ss_pred CCCCCCCCCCcceeeeec
Q 001454 458 HLPVPYASTTSQIVWYFD 475 (1075)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~ 475 (1075)
++|.+.+.+.+++.=|.|
T Consensus 279 glpal~~~~~~~~a~~vD 296 (759)
T PF05518_consen 279 GLPALASPAWSSVAAWVD 296 (759)
T ss_pred CCccccccchhhHhhHhH
Confidence 355555555555444444
No 205
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=43.31 E-value=74 Score=39.91 Aligned_cols=16 Identities=19% Similarity=0.152 Sum_probs=8.0
Q ss_pred CHHHHHHHHHHHhhcc
Q 001454 619 TPEEATTAMAHLRQHR 634 (1075)
Q Consensus 619 s~edA~~A~~~lr~~r 634 (1075)
+.++..+++..|+.-+
T Consensus 324 s~~~L~~~i~~L~eae 339 (620)
T PRK14948 324 NLERILQWQQHLKGSE 339 (620)
T ss_pred CHHHHHHHHHHHHHHH
Confidence 4455555555555433
No 206
>KOG1925 consensus Rac1 GTPase effector FHOS [Signal transduction mechanisms; Cytoskeleton]
Probab=43.17 E-value=25 Score=42.78 Aligned_cols=27 Identities=22% Similarity=0.268 Sum_probs=13.7
Q ss_pred CccCCCcCCCCCCCCCCCCCCCccccC
Q 001454 823 NVVPNTFHVNAVAAPFIPPSVTPLAQI 849 (1075)
Q Consensus 823 ~vmP~~~~~~~~s~PfiP~s~tPLAQp 849 (1075)
+-||+--.+.+++.--.|..-+|.+..
T Consensus 186 ~~~~~~~~~~~~~~~~~P~~~~~~s~~ 212 (817)
T KOG1925|consen 186 GAMPNEAGGDADSPETAPAARTPQSPA 212 (817)
T ss_pred ccCcccccCCCCCcccChHhhCcCCCc
Confidence 345544444456555555555544443
No 207
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=41.45 E-value=18 Score=41.92 Aligned_cols=60 Identities=8% Similarity=0.117 Sum_probs=47.4
Q ss_pred ceEEeccCCCccCHHHHHH---HhhccCCcceEEEeccCc---------eEEEEecCHHHHHHHHHhhcCCc
Q 001454 488 KQLWLGSFGPEASEAHIRF---QIDRFGPLEHFFFFPIKG---------FALVEYINIIDAIRAREYIRNHF 547 (1075)
Q Consensus 488 ~~LWVGnL~~~vte~dL~~---~F~~fG~Le~v~~~~~rg---------fAFVeF~~i~DAv~A~~~L~G~~ 547 (1075)
+-+||=.|++.+..+++.+ -|++||.|-.|..++.++ -++|-|+..+||.+|+..-+|..
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~ 149 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFV 149 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHH
Confidence 5678888888866555543 488888999999877542 37999999999999999988764
No 208
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=39.33 E-value=34 Score=38.32 Aligned_cols=58 Identities=21% Similarity=0.193 Sum_probs=49.8
Q ss_pred cceEEEccCCCchhHHHHHHhhhcccccCCce-eec---CCCCCcccccccCHHHHHHHHHH
Q 001454 572 CFHVYVGNIPNQWAKDEILHESYKVVYKGPYM-VTD---LSCEGALLMEFRTPEEATTAMAH 629 (1075)
Q Consensus 572 s~~lwVG~iss~~~keeLf~E~~k~~~kgp~~-f~d---lser~~LpVEF~s~edA~~A~~~ 629 (1075)
-..|||||..=...||+|..=|+.|+.+.... |+| ..+|++-||-|+..|.|.+|.+.
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d 73 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD 73 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC
Confidence 45799999999999999999999999766553 344 78899999999999999999765
No 209
>PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase
Probab=38.76 E-value=98 Score=35.40 Aligned_cols=15 Identities=33% Similarity=0.499 Sum_probs=5.8
Q ss_pred cceeccCcccceeee
Q 001454 932 GALCKSGVHYCTIYA 946 (1075)
Q Consensus 932 GsL~kSg~~yCtil~ 946 (1075)
|-..+.|-.-|.+-.
T Consensus 223 GDsVkkGQvLavIEA 237 (274)
T PLN02983 223 GDKVQKGQVVCIIEA 237 (274)
T ss_pred CCEecCCCEEEEEEe
Confidence 333334434443333
No 210
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=38.41 E-value=35 Score=39.99 Aligned_cols=58 Identities=21% Similarity=0.294 Sum_probs=46.6
Q ss_pred cccceEEEccCCCchhHHHHHHhhhcccccCCceeecCCCCCcccccccCHHHHHHHHHH
Q 001454 570 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAH 629 (1075)
Q Consensus 570 ~~s~~lwVG~iss~~~keeLf~E~~k~~~kgp~~f~dlser~~LpVEF~s~edA~~A~~~ 629 (1075)
.....||||+..+.+..-+|.+-+-+.|.+.- +..+..+..+||+|.|-+.|.-|++.
T Consensus 226 ~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirs--i~~~~~~~CAFv~ftTR~aAE~Aae~ 283 (377)
T KOG0153|consen 226 TSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRS--IRILPRKGCAFVTFTTREAAEKAAEK 283 (377)
T ss_pred cceeEEEecccccchhHHHHHHHHhhcCCeee--EEeecccccceeeehhhHHHHHHHHh
Confidence 46899999999999999999888886443332 34567788999999999988888765
No 211
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=38.27 E-value=2.7e+02 Score=36.05 Aligned_cols=17 Identities=24% Similarity=0.380 Sum_probs=10.4
Q ss_pred cccCchhHHHHHhhcccc
Q 001454 7 NFAGCTSVQRIVADLVPR 24 (1075)
Q Consensus 7 ~s~gc~svqri~a~~ipr 24 (1075)
.|-|-++||+| -|+|-+
T Consensus 131 vS~~g~kvq~v-kdiiL~ 147 (1106)
T KOG0162|consen 131 VSGGGEKVQHV-KDIILQ 147 (1106)
T ss_pred hccCCcchhhh-hhHhhc
Confidence 45667777774 466644
No 212
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=37.06 E-value=29 Score=38.35 Aligned_cols=64 Identities=20% Similarity=0.071 Sum_probs=51.6
Q ss_pred cccceEEEccCCCchhHHHHHHhhhcccccCCcee-ec---CCCCCcccccccCHHHHHHHHHHHhhcc
Q 001454 570 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TD---LSCEGALLMEFRTPEEATTAMAHLRQHR 634 (1075)
Q Consensus 570 ~~s~~lwVG~iss~~~keeLf~E~~k~~~kgp~~f-~d---lser~~LpVEF~s~edA~~A~~~lr~~r 634 (1075)
...+.+|||++--....+++..++..=+....+.+ .| ...|+.+++||.+.+.+..|++ |++..
T Consensus 99 ~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~ 166 (231)
T KOG4209|consen 99 VDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSE 166 (231)
T ss_pred cCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcc
Confidence 36889999999999999999888888776653333 11 3478999999999999999988 77754
No 213
>PF03154 Atrophin-1: Atrophin-1 family; InterPro: IPR002951 Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA (OMIM:125370) is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins [, ]. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity [].. This entry includes Atrophin-1 and related proteins.
Probab=36.54 E-value=1.2e+03 Score=31.32 Aligned_cols=11 Identities=9% Similarity=0.190 Sum_probs=5.5
Q ss_pred CCCCCcccccC
Q 001454 744 RTEMPEAGFRK 754 (1075)
Q Consensus 744 ~~e~pe~g~~~ 754 (1075)
++-+|+=|.+-
T Consensus 129 ~rs~nd~gssd 139 (982)
T PF03154_consen 129 GRSVNDDGSSD 139 (982)
T ss_pred cccccccCCCC
Confidence 34455555443
No 214
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=36.13 E-value=49 Score=38.82 Aligned_cols=66 Identities=17% Similarity=0.090 Sum_probs=55.9
Q ss_pred cccCceEEeccCCCccCHHHHHHHhhccCCcce--------EEEe------ccCceEEEEecCHHHHHHHHHhhcCCcee
Q 001454 484 FSASKQLWLGSFGPEASEAHIRFQIDRFGPLEH--------FFFF------PIKGFALVEYINIIDAIRAREYIRNHFSW 549 (1075)
Q Consensus 484 ~~~s~~LWVGnL~~~vte~dL~~~F~~fG~Le~--------v~~~------~~rgfAFVeF~~i~DAv~A~~~L~G~~~~ 549 (1075)
.+-..++||=.|+..+++.+|.+.|..+|.|.. ++++ .+++=|.|-|+|.--|.+|+...+|+..+
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 344556788899999999999999999999852 4443 48899999999999999999999999755
No 215
>PF04625 DEC-1_N: DEC-1 protein, N-terminal region; InterPro: IPR006719 The defective chorion-1 gene (dec-1) in Drosophila encodes follicle cell proteins necessary for proper eggshell assembly. Multiple products of the dec-1 gene are formed by alternative RNA splicing and proteolytic processing []. Cleavage products include S80 (80 kDa) which is incorporated into the eggshell, and further proteolysis of S80 gives S60 (60 kDa). This domain is present at the N-terminal of these proteins.; GO: 0005213 structural constituent of chorion, 0007304 chorion-containing eggshell formation, 0005576 extracellular region, 0042600 chorion
Probab=35.65 E-value=88 Score=36.52 Aligned_cols=13 Identities=38% Similarity=0.383 Sum_probs=6.6
Q ss_pred cccCCCCCCCCcc
Q 001454 956 YTHDISEPAEWPA 968 (1075)
Q Consensus 956 at~aisePs~WP~ 968 (1075)
..+.|||=.+-|.
T Consensus 206 QASDISEVRVrPe 218 (407)
T PF04625_consen 206 QASDISEVRVRPE 218 (407)
T ss_pred ccccchheeecCC
Confidence 3455555555444
No 216
>KOG2546 consensus Abl interactor ABI-1, contains SH3 domain [Signal transduction mechanisms; Cytoskeleton]
Probab=35.14 E-value=59 Score=39.13 Aligned_cols=21 Identities=24% Similarity=0.319 Sum_probs=11.3
Q ss_pred ccceEEEccCCCchhHHHHHHhhhc
Q 001454 571 SCFHVYVGNIPNQWAKDEILHESYK 595 (1075)
Q Consensus 571 ~s~~lwVG~iss~~~keeLf~E~~k 595 (1075)
+|...||- +..|.+-+.|.++
T Consensus 34 ycednYiQ----s~~kk~aleetk~ 54 (483)
T KOG2546|consen 34 YCEDNYIQ----SADKKAALEETKA 54 (483)
T ss_pred hhhhchhc----cccHHHHHHHHHH
Confidence 46677765 3344444555554
No 217
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=34.29 E-value=1.1e+02 Score=38.52 Aligned_cols=14 Identities=21% Similarity=0.337 Sum_probs=8.7
Q ss_pred cCceeeeeeeccee
Q 001454 922 SGQLLQYQWQGALC 935 (1075)
Q Consensus 922 ~~~~v~~qWqGsL~ 935 (1075)
.+......|+..+.
T Consensus 458 ~~~~~~~~~~~~~~ 471 (620)
T PRK14954 458 KPGVDLGSWQGKFM 471 (620)
T ss_pred CcccccHhhhhhcc
Confidence 33455677887666
No 218
>PLN02805 D-lactate dehydrogenase [cytochrome]
Probab=33.83 E-value=74 Score=39.38 Aligned_cols=78 Identities=14% Similarity=0.123 Sum_probs=55.8
Q ss_pred cccccccCceEE-ecc-CCCccCHHHHHHHh----hccCCcceEEEe----c-cCceEEEEecCHHHHHHHHHhhc--CC
Q 001454 480 AMDIFSASKQLW-LGS-FGPEASEAHIRFQI----DRFGPLEHFFFF----P-IKGFALVEYINIIDAIRAREYIR--NH 546 (1075)
Q Consensus 480 a~dv~~~s~~LW-VGn-L~~~vte~dL~~~F----~~fG~Le~v~~~----~-~rgfAFVeF~~i~DAv~A~~~L~--G~ 546 (1075)
++.|+.+..++. +|. ...+++.-||..+| +-||=|..+++. + .+.++++.|.+++||.+|++.+. |-
T Consensus 257 ~levVl~dG~iv~~~~~~~k~~~g~dL~~l~~GseGtLGIIT~~tlrl~p~P~~~~~~~~~f~~~~~a~~av~~i~~~g~ 336 (555)
T PLN02805 257 SLKVVLPNGDVVKTASRARKSAAGYDLTRLVIGSEGTLGVITEVTLRLQKIPQHSVVAMCNFPTIKDAADVAIATMLSGI 336 (555)
T ss_pred EEEEEcCCceEEEecCccccCCCCccHHHHhccCCCceEEEEEEEEEeecCCcceEEEEEEcCCHHHHHHHHHHHHhCCC
Confidence 566666665554 442 22334456788776 468888988874 3 56788999999999999999976 44
Q ss_pred ceeEEEEeecC
Q 001454 547 FSWRVKFMDVG 557 (1075)
Q Consensus 547 ~~~RI~F~r~~ 557 (1075)
.+..+||+|..
T Consensus 337 ~psa~ElmD~~ 347 (555)
T PLN02805 337 QVSRVELLDEV 347 (555)
T ss_pred CcEEEEEECHH
Confidence 55699999883
No 219
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=33.44 E-value=11 Score=42.61 Aligned_cols=50 Identities=22% Similarity=0.313 Sum_probs=38.5
Q ss_pred cCHHHHHHHhhccCCcceEEEe-----c----c-------Cce---------EEEEecCHHHHHHHHHhhcCCce
Q 001454 499 ASEAHIRFQIDRFGPLEHFFFF-----P----I-------KGF---------ALVEYINIIDAIRAREYIRNHFS 548 (1075)
Q Consensus 499 vte~dL~~~F~~fG~Le~v~~~-----~----~-------rgf---------AFVeF~~i~DAv~A~~~L~G~~~ 548 (1075)
-+|+-|+..|+.||.|.+|-+- + + .|| |||.|..-.--..|+.+|+|...
T Consensus 173 pse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayvqfmeykgfa~amdalr~~k~ 247 (445)
T KOG2891|consen 173 PSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYVQFMEYKGFAQAMDALRGMKL 247 (445)
T ss_pred ChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHHHHHHHHhHHHHHHHHhcchH
Confidence 5789999999999999998761 1 1 233 56778777778888888888764
No 220
>KOG1984 consensus Vesicle coat complex COPII, subunit SFB3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.70 E-value=1.4e+03 Score=30.74 Aligned_cols=8 Identities=38% Similarity=0.405 Sum_probs=3.8
Q ss_pred CCccccCC
Q 001454 843 VTPLAQIQ 850 (1075)
Q Consensus 843 ~tPLAQpQ 850 (1075)
..|++|.+
T Consensus 137 ~~pls~~~ 144 (1007)
T KOG1984|consen 137 AGPLSQGP 144 (1007)
T ss_pred CCccccCC
Confidence 34455544
No 221
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=32.36 E-value=28 Score=39.28 Aligned_cols=49 Identities=22% Similarity=0.272 Sum_probs=39.3
Q ss_pred HHHHHhhh-cccccCCceeec---CCCCCcccccccCHHHHHHHHHHHhhccc
Q 001454 587 DEILHESY-KVVYKGPYMVTD---LSCEGALLMEFRTPEEATTAMAHLRQHRK 635 (1075)
Q Consensus 587 eeLf~E~~-k~~~kgp~~f~d---lser~~LpVEF~s~edA~~A~~~lr~~r~ 635 (1075)
|++|.|+. +.+.+..+.+-+ ..-.+.++|.|.+-|+|.+|+..|+++.-
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~ 135 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWY 135 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccc
Confidence 78999998 777666665522 34468899999999999999999999763
No 222
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=32.00 E-value=1.5e+02 Score=38.53 Aligned_cols=9 Identities=33% Similarity=0.767 Sum_probs=4.0
Q ss_pred eeeeeecce
Q 001454 926 LQYQWQGAL 934 (1075)
Q Consensus 926 v~~qWqGsL 934 (1075)
++-+|.-.+
T Consensus 512 lr~~W~~Il 520 (824)
T PRK07764 512 LRERWPEIL 520 (824)
T ss_pred HHHHHHHHH
Confidence 444454433
No 223
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=31.22 E-value=75 Score=36.63 Aligned_cols=51 Identities=12% Similarity=0.094 Sum_probs=41.5
Q ss_pred CCcccccccccCceEEeccCCCccCHHHHHHHhhccCCcc-eEEEeccCceEEEEecCH
Q 001454 476 EDPAAMDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLE-HFFFFPIKGFALVEYINI 533 (1075)
Q Consensus 476 g~~~a~dv~~~s~~LWVGnL~~~vte~dL~~~F~~fG~Le-~v~~~~~rgfAFVeF~~i 533 (1075)
|.+++-| +|||||+.++.-.||..++.+-|-.- ++.-.-.+|-||..|-|-
T Consensus 326 ~a~~~~d-------i~~~nl~rd~rv~dlk~~lr~~~~~pm~iswkg~~~k~flh~~~~ 377 (396)
T KOG4410|consen 326 EAGAKTD-------IKLTNLSRDIRVKDLKSELRKRECTPMSISWKGHFGKCFLHFGNR 377 (396)
T ss_pred cCccccc-------eeeccCccccchHHHHHHHHhcCCCceeEeeecCCcceeEecCCc
Confidence 5666777 79999999999999999999877654 444445899999999874
No 224
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=31.00 E-value=1e+02 Score=37.02 Aligned_cols=67 Identities=7% Similarity=0.096 Sum_probs=47.1
Q ss_pred cCceEEeccCCCccCHHHHHHHhhccCCcceEE----EeccCceEEEEecCHHHHHHHHHhhcCCceeEEEEeec
Q 001454 486 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFF----FFPIKGFALVEYINIIDAIRAREYIRNHFSWRVKFMDV 556 (1075)
Q Consensus 486 ~s~~LWVGnL~~~vte~dL~~~F~~fG~Le~v~----~~~~rgfAFVeF~~i~DAv~A~~~L~G~~~~RI~F~r~ 556 (1075)
-+|+=||.+..=+| ...+|..++.|-.=| +..+-..||..|..+..-.++...=.|+-++|.---|.
T Consensus 221 Ltcnd~iS~FEFDv----FTRLFqPw~tllkNWq~LavtHPGYmAFLTYDEVk~RLqk~~~KpGSYIFRlSCTRl 291 (563)
T KOG1785|consen 221 LTCNDFISNFEFDV----FTRLFQPWKTLLKNWQTLAVTHPGYMAFLTYDEVKARLQKYIKKPGSYIFRLSCTRL 291 (563)
T ss_pred cccccceeeehhhh----HHHhhccHHHHHHhhhhhhccCCceeEEeeHHHHHHHHHHHhcCCCceEEeeccCcc
Confidence 36666666655444 346788888876444 34466779999988888888888888888877765554
No 225
>smart00498 FH2 Formin Homology 2 Domain. FH proteins control rearrangements of the actin cytoskeleton, especially in the context of cytokinesis and cell polarisation. Members of this family have been found to interact with Rho-GTPases, profilin and other actin-assoziated proteins. These interactions are mediated by the proline-rich FH1 domain, usually located in front of FH2 (but not listed in SMART). Despite this cytosolic function, vertebrate formins have been assigned functions within the nucleus. A set of Formin-Binding Proteins (FBPs) has been shown to bind FH1 with their WW domain.
Probab=30.78 E-value=32 Score=40.72 Aligned_cols=92 Identities=13% Similarity=0.214 Sum_probs=60.3
Q ss_pred CCCcccccCCCcccccccccccccCCCCCcc---cc-------ccCC--CCCCCccchhcHHHHHhhcccc------ceE
Q 001454 964 AEWPAKLDMTKRTDFRHVKSTFTSTPPNKRE---VC-------RLVP--SSPGDHKGFQDFVSYLKQRECA------GVI 1025 (1075)
Q Consensus 964 s~WP~~lD~TnRTDFd~VeslFa~tPP~kRE---Vc-------rLvP--~s~~D~K~fqdFiifL~Q~~ca------gvi 1025 (1075)
+.|....+.. ..|++.++.+|+.....+.. +- +-.+ -...|.|..|++.|.|++.+.. +..
T Consensus 26 tvW~~i~~~~-~~d~~~lE~lF~~k~~~~~~~~~~~~~~~~~~~~~~~~v~ild~krs~ni~I~L~~l~~~~~ei~~ai~ 104 (432)
T smart00498 26 TVWDKIDENS-EGDLDELEELFAAKEKTKSASKDVSEKKSILKKKVSQEFKILDPKRSQNLAILLRKLHMSYEEICEAIL 104 (432)
T ss_pred ChhhhcCccc-ccCHHHHHHHhCcCccccCccccccccccccccccccceEeechhHHhhHHHHHHhcCCCHHHHHHHHH
Confidence 6787755543 78889999999974432211 00 0111 2678999999999999888642 222
Q ss_pred eecc--h-hhhHHHHHhhcCCchhhccccccCCC
Q 001454 1026 KIPA--V-KSIWARLMFILPYSQDICSMLSIAPN 1056 (1075)
Q Consensus 1026 Kl~~--v-~s~~krlL~llPes~evcsmLsla~d 1056 (1075)
.++. + .+.++.|+..+|..+|+.....+..+
T Consensus 105 ~~d~~~l~~e~l~~L~~~~Pt~eE~~~l~~~~~~ 138 (432)
T smart00498 105 EGDEDVLSVDLLEQLLKYAPTKEELKKLREYKEE 138 (432)
T ss_pred hcChhhCCHHHHHHHHhhCcCHHHHHHHHHhccc
Confidence 2221 1 26788899999999988887776533
No 226
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=28.81 E-value=63 Score=27.90 Aligned_cols=52 Identities=13% Similarity=0.213 Sum_probs=35.8
Q ss_pred ceEEEccCCCchhHHHHHHhhhcccccCCceeecCCCCCcccccccCHHHHHHHH
Q 001454 573 FHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAM 627 (1075)
Q Consensus 573 ~~lwVG~iss~~~keeLf~E~~k~~~kgp~~f~dlser~~LpVEF~s~edA~~A~ 627 (1075)
+.|=|-|.+.. ..++++.-+..+|.+..+.+. ...+.++|.|.+..+|..|+
T Consensus 2 ~wI~V~Gf~~~-~~~~vl~~F~~fGeI~~~~~~--~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPD-LAEEVLEHFASFGEIVDIYVP--ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECch-HHHHHHHHHHhcCCEEEEEcC--CCCcEEEEEECCHHHHHhhC
Confidence 34455555543 446777777766655554433 46899999999999999885
No 227
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=27.72 E-value=92 Score=30.45 Aligned_cols=58 Identities=19% Similarity=0.287 Sum_probs=36.8
Q ss_pred ceEEEccCCCchhHHHHHHhhhcccccCCceeecCC-CCCcccccccCHHHHHHHHHHHhhc
Q 001454 573 FHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLS-CEGALLMEFRTPEEATTAMAHLRQH 633 (1075)
Q Consensus 573 ~~lwVG~iss~~~keeLf~E~~k~~~kgp~~f~dls-er~~LpVEF~s~edA~~A~~~lr~~ 633 (1075)
+.|.|-++....++|+|...+.. ++.+.++|+. .....+|=|.+.++|..|+..+...
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~---~g~V~yVD~~~G~~~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQ---FGEVAYVDFSRGDTEGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-S---S--EEEEE--TT-SEEEEEESS---HHHHHHHHHHT
T ss_pred eEEEEecCCCCcCHHHHHHHHHh---cCCcceEEecCCCCEEEEEECCcchHHHHHHHHHhc
Confidence 46778888888999999988886 4477777744 4678899999999999999988776
No 228
>KOG0559 consensus Dihydrolipoamide succinyltransferase (2-oxoglutarate dehydrogenase, E2 subunit) [Energy production and conversion]
Probab=27.44 E-value=1.8e+02 Score=34.83 Aligned_cols=10 Identities=0% Similarity=-0.210 Sum_probs=4.0
Q ss_pred ccceeeeecc
Q 001454 940 HYCTIYAQRE 949 (1075)
Q Consensus 940 ~yCtil~s~i 949 (1075)
+|..+.++++
T Consensus 248 QNt~A~LTTF 257 (457)
T KOG0559|consen 248 QNTAAMLTTF 257 (457)
T ss_pred hhhhhhhhhh
Confidence 3333444443
No 229
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=26.94 E-value=60 Score=37.51 Aligned_cols=50 Identities=22% Similarity=0.218 Sum_probs=37.4
Q ss_pred hHHHHHHhhhcccccCCcee---ecCCC--CCcccccccCHHHHHHHHHHHhhcc
Q 001454 585 AKDEILHESYKVVYKGPYMV---TDLSC--EGALLMEFRTPEEATTAMAHLRQHR 634 (1075)
Q Consensus 585 ~keeLf~E~~k~~~kgp~~f---~dlse--r~~LpVEF~s~edA~~A~~~lr~~r 634 (1075)
-.+|+..|+.+.+..+.+.| ..+.+ .-.+||||+.++.|+.|..-|+++-
T Consensus 299 lede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRy 353 (378)
T KOG1996|consen 299 LEDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRY 353 (378)
T ss_pred HHHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCce
Confidence 45667788888888876633 22333 3457999999999999999998865
No 230
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=26.66 E-value=71 Score=36.87 Aligned_cols=147 Identities=10% Similarity=0.165 Sum_probs=96.0
Q ss_pred cCceEEeccCCCccCHHHHHHHhhccCCcceEEEeccC-------------ceEEEEecCHHHHHHHHHh----------
Q 001454 486 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIK-------------GFALVEYINIIDAIRAREY---------- 542 (1075)
Q Consensus 486 ~s~~LWVGnL~~~vte~dL~~~F~~fG~Le~v~~~~~r-------------gfAFVeF~~i~DAv~A~~~---------- 542 (1075)
-+|.|-.-|+-.++.=..+...|.+||+||+|.++... -.-++-|..-+.+.+=...
T Consensus 14 rTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~ 93 (309)
T PF10567_consen 14 RTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKT 93 (309)
T ss_pred eeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHH
Confidence 37889999999999999999999999999999999866 6678888887777664322
Q ss_pred -hcCCceeEEEEeec--------CCCCc-------cc--ccceeccccceEEEccCCCchhHHHHHHhhhcccccCC---
Q 001454 543 -IRNHFSWRVKFMDV--------GLGTK-------GV--INGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGP--- 601 (1075)
Q Consensus 543 -L~G~~~~RI~F~r~--------~~g~~-------g~--~~g~~~~~s~~lwVG~iss~~~keeLf~E~~k~~~kgp--- 601 (1075)
|+-..+ .+.|..- +.-.. .. ++=+.-|+.|.|.|-.= ....+++++.+-..+.....
T Consensus 94 ~L~S~~L-~lsFV~l~y~~~~~~~~~~~~~~~~~~~~L~~~i~~~gATRSl~IeF~-~~~~~~dl~~~kL~fL~~~~n~R 171 (309)
T PF10567_consen 94 KLKSESL-TLSFVSLNYQKKTDPNDEEADFSDYLVASLQYNIINRGATRSLAIEFK-DPVDKDDLIEKKLPFLKNSNNKR 171 (309)
T ss_pred hcCCcce-eEEEEEEeccccccccccccchhhHHhhhhhheeecCCcceEEEEEec-CccchhHHHHHhhhhhccCCCce
Confidence 222211 3444421 00000 00 11122257888888776 44447778777655541111
Q ss_pred -----ceeecC------CCCCcccccccCHHHHHHHHHHHhhcc
Q 001454 602 -----YMVTDL------SCEGALLMEFRTPEEATTAMAHLRQHR 634 (1075)
Q Consensus 602 -----~~f~dl------ser~~LpVEF~s~edA~~A~~~lr~~r 634 (1075)
+.+... =.++++.+=|-++.=|..+|.+||...
T Consensus 172 YVlEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk~~~ 215 (309)
T PF10567_consen 172 YVLESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLKSNS 215 (309)
T ss_pred EEEEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHHhcc
Confidence 111111 146788999999999999999999764
No 231
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=26.49 E-value=95 Score=30.24 Aligned_cols=60 Identities=18% Similarity=0.256 Sum_probs=38.4
Q ss_pred ceEEEccCCCchhHHHHHHhhhcccccCCc--eeecCCCCCcccccccCHHHHHHHHHHHhhccc
Q 001454 573 FHVYVGNIPNQWAKDEILHESYKVVYKGPY--MVTDLSCEGALLMEFRTPEEATTAMAHLRQHRK 635 (1075)
Q Consensus 573 ~~lwVG~iss~~~keeLf~E~~k~~~kgp~--~f~dlser~~LpVEF~s~edA~~A~~~lr~~r~ 635 (1075)
..|||-+.|..+....+-+-+.... +.. .+..+ ..+.+.|-|.+.|.|.+|.+.|.+++-
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLs--dNCGGkVl~v-~~~tAilrF~~~~~A~RA~KRmegEdV 64 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLS--DNCGGKVLSV-SGGTAILRFPNQEFAERAQKRMEGEDV 64 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHH--HTTT--EEE---TT-EEEEESSHHHHHHHHHHHTT--S
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHh--hccCCEEEEE-eCCEEEEEeCCHHHHHHHHHhhccccc
Confidence 3689999999877777666666422 222 33344 358999999999999999999998774
No 232
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=24.19 E-value=16 Score=43.25 Aligned_cols=71 Identities=10% Similarity=-0.063 Sum_probs=57.1
Q ss_pred ecCCcccccccccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec--cCceEEEEecCHHHHHHHHHhhc
Q 001454 474 FDEDPAAMDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP--IKGFALVEYINIIDAIRAREYIR 544 (1075)
Q Consensus 474 ~~g~~~a~dv~~~s~~LWVGnL~~~vte~dL~~~F~~fG~Le~v~~~~--~rgfAFVeF~~i~DAv~A~~~L~ 544 (1075)
|+-+.+|..|=-.-+.++|++|..++-..|+.+.|.+||.+---.++. ...|+-|+|..----+.|.+.+.
T Consensus 138 Lp~~~~A~kleeirRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~ask~~s~~c~~sf~~qts~~halr~~g 210 (479)
T KOG4676|consen 138 LPPQAAAKKLEEIRRTREVQSLISAAILPESGESFERKGEVSYAHTASKSRSSSCSHSFRKQTSSKHALRSHG 210 (479)
T ss_pred CChHhhhhhhHHHHhhhhhhcchhhhcchhhhhhhhhcchhhhhhhhccCCCcchhhhHhhhhhHHHHHHhcc
Confidence 555667888877789999999999999999999999999987555543 66777899998777777766543
No 233
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=23.94 E-value=1.8e+02 Score=30.58 Aligned_cols=46 Identities=11% Similarity=0.050 Sum_probs=37.7
Q ss_pred HHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhcCCcee
Q 001454 501 EAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW 549 (1075)
Q Consensus 501 e~dL~~~F~~fG~Le~v~~~~~rgfAFVeF~~i~DAv~A~~~L~G~~~~ 549 (1075)
..+|.+.|..||.+-=|+|.. +--+|.|++-+-|.+|+ .|+|..++
T Consensus 50 ~~~ll~~~~~~GevvLvRfv~--~~mwVTF~dg~sALaal-s~dg~~v~ 95 (146)
T PF08952_consen 50 MDELLQKFAQYGEVVLVRFVG--DTMWVTFRDGQSALAAL-SLDGIQVN 95 (146)
T ss_dssp HHHHHHHHHCCS-ECEEEEET--TCEEEEESSCHHHHHHH-HGCCSEET
T ss_pred HHHHHHHHHhCCceEEEEEeC--CeEEEEECccHHHHHHH-ccCCcEEC
Confidence 357889999999888777766 57799999999999996 58888876
No 234
>KOG0682 consensus Ammonia permease [Inorganic ion transport and metabolism]
Probab=23.33 E-value=38 Score=41.37 Aligned_cols=57 Identities=19% Similarity=0.175 Sum_probs=49.4
Q ss_pred hcchhhhccccccccccccCCCCccccccchhhhhhhhhhhhhhccCCCceEeechhhhhccCCchHHHHh
Q 001454 63 QTASACIFGLGDICRTASSEVPTSSVIRGICSAVFHNVLDFFISSFDGKDIIHTVDKEITKMLDSDEVFLG 133 (1075)
Q Consensus 63 ~ta~aci~gl~dic~~a~s~~~~s~~~~~ics~v~~~vl~ff~~~f~gkdi~~~~~~~~~~~~d~~e~~~~ 133 (1075)
-++.+|+.|||-||..+..+.|=.+++-|+=++++-|.++- -++.+|+-||.++|.+
T Consensus 290 ~~cnG~laGlVaiT~gc~~v~pWaAiviG~va~~~~~~~~k--------------L~~~lkvDDpl~~f~~ 346 (500)
T KOG0682|consen 290 GLCNGILAGLVAITPGCGVVEPWAAIVIGAVAGLVCNAANK--------------LKERLKVDDPLDAFAV 346 (500)
T ss_pred hhHHHHHHHHHhhcCCCcccCcHHHHHHhHHHHHHHHHHHH--------------HHHHhcCCcHHHHHHH
Confidence 35789999999999999999999999999999998887654 3778888999888753
No 235
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=22.98 E-value=3e+02 Score=25.12 Aligned_cols=52 Identities=17% Similarity=0.185 Sum_probs=39.3
Q ss_pred eEEeccCCCccCHHHHHHHhhcc----CCcceEEEeccCceEEEEecCHHHHHHHHHhh
Q 001454 489 QLWLGSFGPEASEAHIRFQIDRF----GPLEHFFFFPIKGFALVEYINIIDAIRAREYI 543 (1075)
Q Consensus 489 ~LWVGnL~~~vte~dL~~~F~~f----G~Le~v~~~~~rgfAFVeF~~i~DAv~A~~~L 543 (1075)
.|.|-++ .+.+.+||+.-|..| ++..==|+ +-.-|=|-|.+.++|.+|+.+|
T Consensus 7 avhirGv-d~lsT~dI~~y~~~y~~~~~~~~IEWI--dDtScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 7 AVHIRGV-DELSTDDIKAYFSEYFDEEGPFRIEWI--DDTSCNVVFKDEETAARALVAL 62 (62)
T ss_pred eEEEEcC-CCCCHHHHHHHHHHhcccCCCceEEEe--cCCcEEEEECCHHHHHHHHHcC
Confidence 4566665 458899999999999 54432233 4466889999999999999876
No 236
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=21.76 E-value=3.3e+02 Score=35.15 Aligned_cols=29 Identities=31% Similarity=0.293 Sum_probs=23.1
Q ss_pred CCCCCcccccccCHHHHHHHHHHHhhccc
Q 001454 607 LSCEGALLMEFRTPEEATTAMAHLRQHRK 635 (1075)
Q Consensus 607 lser~~LpVEF~s~edA~~A~~~lr~~r~ 635 (1075)
..|.+-+||=|-|=|||+-||..=|..-+
T Consensus 37 GGe~GeaFI~FsTDeDARlaM~kdr~~i~ 65 (944)
T KOG4307|consen 37 GGEEGEAFIGFSTDEDARLAMTKDRLMIH 65 (944)
T ss_pred cccccceEEEecccchhhhhhhhccccee
Confidence 45778899999999999999886555443
No 237
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=21.65 E-value=1e+02 Score=38.35 Aligned_cols=113 Identities=22% Similarity=0.338 Sum_probs=73.3
Q ss_pred cccccCchhHHHHHhhccccccccCchhHhhhhhheeeeccceeeeeccCCCCCcchhhcchhhhccccccccccccCCC
Q 001454 5 AANFAGCTSVQRIVADLVPRYALYCPTALEAATEVVIYMHNSSVALINRGEDADGVAFQTASACIFGLGDICRTASSEVP 84 (1075)
Q Consensus 5 ~~~s~gc~svqri~a~~iprya~~cptal~aa~~v~i~m~~~~~a~~~rg~d~~gva~~ta~aci~gl~dic~~a~s~~~ 84 (1075)
|.++-|=..++|+.|-+||||..+=|+--|.|.-+.+|.- -+||+ +.=+.-|-||.+||-..
T Consensus 29 l~~~kg~~k~K~Laaq~I~kffk~FP~l~~~Ai~a~~DLc--------EDed~-----~iR~~aik~lp~~ck~~----- 90 (556)
T PF05918_consen 29 LDGVKGSPKEKRLAAQFIPKFFKHFPDLQEEAINAQLDLC--------EDEDV-----QIRKQAIKGLPQLCKDN----- 90 (556)
T ss_dssp HHGGGS-HHHHHHHHHHHHHHHCC-GGGHHHHHHHHHHHH--------T-SSH-----HHHHHHHHHGGGG--T------
T ss_pred HHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHH--------hcccH-----HHHHHHHHhHHHHHHhH-----
Confidence 4556677889999999999999999999999998887753 23442 34456688899999652
Q ss_pred CccccccchhhhhhhhhhhhhhccCCCceEeechhhhhccCCchHHHHhhhcccCCCchhhhhhhHHHHHhHHHHHHhcC
Q 001454 85 TSSVIRGICSAVFHNVLDFFISSFDGKDIIHTVDKEITKMLDSDEVFLGLKKKFSDEDESSLIKLSKFRLLSLLQIFFSS 164 (1075)
Q Consensus 85 ~s~~~~~ics~v~~~vl~ff~~~f~gkdi~~~~~~~~~~~~d~~e~~~~lk~~~~~~~~~~~~~l~~~~~l~~l~~f~~~ 164 (1075)
++++ ..+-++|-|-+.-|+..-++-. --+|+.+|-..
T Consensus 91 ----------------------------------~~~v-----~kvaDvL~QlL~tdd~~E~~~v----~~sL~~ll~~d 127 (556)
T PF05918_consen 91 ----------------------------------PEHV-----SKVADVLVQLLQTDDPVELDAV----KNSLMSLLKQD 127 (556)
T ss_dssp -----------------------------------T-H-----HHHHHHHHHHTT---HHHHHHH----HHHHHHHHHH-
T ss_pred ----------------------------------HHHH-----hHHHHHHHHHHhcccHHHHHHH----HHHHHHHHhcC
Confidence 1111 2456666666655444433322 24778888899
Q ss_pred chHHHHHHHHhcCc
Q 001454 165 PKNLLAACFELFNP 178 (1075)
Q Consensus 165 p~~~l~acf~l~~s 178 (1075)
||..|.+=|.-+.+
T Consensus 128 ~k~tL~~lf~~i~~ 141 (556)
T PF05918_consen 128 PKGTLTGLFSQIES 141 (556)
T ss_dssp HHHHHHHHHHHHH-
T ss_pred cHHHHHHHHHHHHh
Confidence 99999999998874
No 238
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=21.02 E-value=1e+02 Score=35.87 Aligned_cols=53 Identities=15% Similarity=0.184 Sum_probs=41.8
Q ss_pred EEeccCCC-ccCHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHh
Q 001454 490 LWLGSFGP-EASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREY 542 (1075)
Q Consensus 490 LWVGnL~~-~vte~dL~~~F~~fG~Le~v~~~~~rgfAFVeF~~i~DAv~A~~~ 542 (1075)
-||-=.|= -..-+-|..+|++||.|-....-+.-+|-.|-|-+..||.+|+..
T Consensus 198 ~WVTVfGFppg~~s~vL~~F~~cG~Vvkhv~~~ngNwMhirYssr~~A~KALsk 251 (350)
T KOG4285|consen 198 TWVTVFGFPPGQVSIVLNLFSRCGEVVKHVTPSNGNWMHIRYSSRTHAQKALSK 251 (350)
T ss_pred ceEEEeccCccchhHHHHHHHhhCeeeeeecCCCCceEEEEecchhHHHHhhhh
Confidence 46644332 134467888999999999888878889999999999999999753
No 239
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=20.85 E-value=1.3e+02 Score=35.71 Aligned_cols=66 Identities=11% Similarity=-0.013 Sum_probs=51.0
Q ss_pred ccccceEEEccCCCchhHHHHHHhhhcccccCCcee-ec---CCCCCcccccccCHHHHHHHHHHHhhcc
Q 001454 569 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TD---LSCEGALLMEFRTPEEATTAMAHLRQHR 634 (1075)
Q Consensus 569 ~~~s~~lwVG~iss~~~keeLf~E~~k~~~kgp~~f-~d---lser~~LpVEF~s~edA~~A~~~lr~~r 634 (1075)
+-|-++|+|-..-++..+|+|.-=+-.||.+..+.+ .| +..=.++||||++.+..-+|---|..-.
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvL 305 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVL 305 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhccee
Confidence 348999999999999999998877777776665543 23 4455788999999998888877666533
Done!