Query 001454
Match_columns 1075
No_of_seqs 353 out of 357
Neff 4.0
Searched_HMMs 29240
Date Tue Mar 26 16:36:57 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001454.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_755-759//hhsearch_pdb/001454hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f02_A Polyadenylate-binding p 1.0 1 1 155.1 11.9 144 485-635 13-168 (213)
2 3sde_A Paraspeckle component 1 1.0 1 1 152.8 14.3 138 482-634 17-161 (261)
3 3tyt_A Heterogeneous nuclear r 1.0 1 1 152.8 15.2 152 485-636 2-191 (205)
4 3smz_A Protein raver-1, ribonu 1.0 1 1 151.6 13.6 186 484-694 19-220 (284)
5 3pgw_A U1-A; protein-RNA compl 1.0 1 1 151.4 14.5 151 484-635 6-269 (282)
6 2adc_A Polypyrimidine tract-bi 1.0 1 1 150.3 14.9 151 484-635 31-214 (229)
7 1fxl_A Paraneoplastic encephal 1.0 1 1 149.4 13.9 141 486-635 1-155 (167)
8 2qfj_A FBP-interacting repress 1.0 1 1 148.9 10.5 155 481-635 22-192 (216)
9 3nmr_A Cugbp ELAV-like family 1.0 1 1 148.1 14.2 143 485-635 1-161 (175)
10 1b7f_A Protein (SXL-lethal pro 1.0 1 1 148.0 13.5 142 485-635 1-156 (168)
No 1
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=1.00 E-value=1 Score=155.10 Aligned_cols=144 Identities=17% Similarity=0.209 Sum_probs=118.7
Q ss_pred CCCCEEEECCCCCCCCHHHHHHHHHCCCCCCEEEEEC------CCCEEEEEECCHHHHHHHHHHHCCCCEE----EEEEE
Q ss_conf 4676388416898527999999742039953699815------6744999924878999999762288301----89982
Q 001454 485 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 554 (1075)
Q Consensus 485 ~~s~~LWVGnL~~~vte~dL~~~F~~fG~Le~v~~~~------~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~ 554 (1075)
.|+++||||||+.+++|++|++.|++||+|.++.+.+ .+|||||+|.+.+||..|++.|+|.... |+.++
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~ 92 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS 92 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 99758999399987879999999986198799987314688875664610008999999999984021027833200233
Q ss_pred ECCCCCCCCCCCEECCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCEE-EC-CCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 03789765336511021006998158980017899985300223387122-14-78887223200398899999999721
Q 001454 555 DVGLGTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TD-LSCEGALLMEFRTPEEATTAMAHLRQ 632 (1075)
Q Consensus 555 r~~~g~~g~~~g~~~~~s~~lwVG~iss~~~keeLfsE~~s~~~kgpv~i-~d-lsek~~LpIEF~s~edA~~A~~~lr~ 632 (1075)
..... ......+.||||+++..+.+++|..-+..++.+..+.+ .+ ...++.++|+|.+.++|..|+..|++
T Consensus 93 ~~~~~-------~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng 165 (213)
T 4f02_A 93 QRDPS-------LRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNG 165 (213)
T ss_dssp CCCTH-------HHHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCCC-------CCCCCCCCCEECCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCEEEEEEECCHHHHHHHHHHHCC
T ss_conf 32110-------10134555347776444279999999856699679976325898842899986889999999998199
Q ss_pred CCC
Q ss_conf 035
Q 001454 633 HRK 635 (1075)
Q Consensus 633 ~r~ 635 (1075)
...
T Consensus 166 ~~~ 168 (213)
T 4f02_A 166 MLL 168 (213)
T ss_dssp CEE
T ss_pred CEE
T ss_conf 988
No 2
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=1.00 E-value=1 Score=152.85 Aligned_cols=138 Identities=15% Similarity=0.206 Sum_probs=119.8
Q ss_pred CCCCCCCEEEECCCCCCCCHHHHHHHHHCCCCCCEEEEECCCCEEEEEECCHHHHHHHHHHHCCCCEE----EEEEEECC
Q ss_conf 22346763884168985279999997420399536998156744999924878999999762288301----89982037
Q 001454 482 DIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDVG 557 (1075)
Q Consensus 482 dv~~~s~~LWVGnL~~~vte~dL~~~F~~fG~Le~v~~~~~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~r~~ 557 (1075)
.-...+++||||||+.++++++|+..|++||+|.++++.+.||||||+|.+.++|..|++.|+|..+. +|+++.+
T Consensus 17 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~- 95 (261)
T 3sde_A 17 KTYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATH- 95 (261)
T ss_dssp CSSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCC-
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCEEEEEEECCCCEEEEEECCHHHHHHHHHHCCCCEECCCEEEEEECCC-
T ss_conf 7889988899979999999999999998559979999837896799997999999999987599698782457621146-
Q ss_pred CCCCCCCCCEECCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCEE-EC--CCCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 89765336511021006998158980017899985300223387122-14--7888722320039889999999972103
Q 001454 558 LGTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TD--LSCEGALLMEFRTPEEATTAMAHLRQHR 634 (1075)
Q Consensus 558 ~g~~g~~~g~~~~~s~~lwVG~iss~~~keeLfsE~~s~~~kgpv~i-~d--lsek~~LpIEF~s~edA~~A~~~lr~~r 634 (1075)
.+.||||+++..+.+++|...+..++.+..+.+ .+ ...++.++|+|.+.++|..|+..|++..
T Consensus 96 --------------~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~ 161 (261)
T 3sde_A 96 --------------GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGA 161 (261)
T ss_dssp --------------SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSC
T ss_pred --------------CCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEEEECCCCCCCCEEEEEECCHHHHHHHHHHHCCCE
T ss_conf --------------776301589997899999999974599689982137899958679999588999999999865986
No 3
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=1.00 E-value=1 Score=152.78 Aligned_cols=152 Identities=16% Similarity=0.125 Sum_probs=120.7
Q ss_pred CCCCEEEECCCC-CCCCHHHHHHHHHCCCCCCEEEEEC-CCCEEEEEECCHHHHHHHHHHHCCCCEE----EEEEEECCC
Q ss_conf 467638841689-8527999999742039953699815-6744999924878999999762288301----899820378
Q 001454 485 SASKQLWLGSFG-PEASEAHIRFQIDRFGPLEHFFFFP-IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDVGL 558 (1075)
Q Consensus 485 ~~s~~LWVGnL~-~~vte~dL~~~F~~fG~Le~v~~~~-~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~r~~~ 558 (1075)
.+++.||||||+ .++++++|+..|+.||.|.++++.+ .||||||+|.+.++|..|++.|+|..+. +|++++...
T Consensus 2 ~~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~~~ 81 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQPA 81 (205)
T ss_dssp CCCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTSTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCSC
T ss_pred CCCCEEEEECCCCCCCCHHHHHHHHHHCCCEEEEEEECCCCCEEEEEECCHHHHHHHHHHHCCCEECCCEEEEEECCCCC
T ss_conf 98888999489801199999999998359858999950899889999898999999999868997789658999815876
Q ss_pred C---C-----------CCCC----CCE----------ECCCCCEEEECCCCCCHHHHHHHHHHHCCCCC--CCCEE-EC-
Q ss_conf 9---7-----------6533----651----------10210069981589800178999853002233--87122-14-
Q 001454 559 G---T-----------KGVI----NGV----------AVGSCFHVYVGNIPNQWAKDEILHESYKVVYK--GPYMV-TD- 606 (1075)
Q Consensus 559 g---~-----------~g~~----~g~----------~~~~s~~lwVG~iss~~~keeLfsE~~s~~~k--gpv~i-~d- 606 (1075)
. . +.+. +.. ...+++.|||++++..+.+|+|..-+..++.+ ..+.+ .+
T Consensus 82 ~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~ 161 (205)
T 3tyt_A 82 IMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK 161 (205)
T ss_dssp CCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCEEEEEEECCC
T ss_conf 57876556666784433467775446467543333556898546777379987899999999986498241799997389
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 788872232003988999999997210358
Q 001454 607 LSCEGALLMEFRTPEEATTAMAHLRQHRKS 636 (1075)
Q Consensus 607 lsek~~LpIEF~s~edA~~A~~~lr~~r~e 636 (1075)
...++.++|||++.++|..|+..|++....
T Consensus 162 ~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~ 191 (205)
T 3tyt_A 162 SERSSSGLLEWDSKSDALETLGFLNHYQMK 191 (205)
T ss_dssp SSSSEEEEEECSSHHHHHHHHHHHTTCEEC
T ss_pred CCCCEEEEEEECCHHHHHHHHHHHCCCCCC
T ss_conf 987607999969999999999986788826
No 4
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=1.00 E-value=1 Score=151.62 Aligned_cols=186 Identities=13% Similarity=0.104 Sum_probs=126.0
Q ss_pred CCCCCEEEECCCCCCCCHHHHHHHHHCCCCCCEEEEECCCCEEEEEECCHHHHHHHHHHHCCCCEE----EEEEEECCCC
Q ss_conf 346763884168985279999997420399536998156744999924878999999762288301----8998203789
Q 001454 484 FSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDVGLG 559 (1075)
Q Consensus 484 ~~~s~~LWVGnL~~~vte~dL~~~F~~fG~Le~v~~~~~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~r~~~g 559 (1075)
...+++||||||+.++++++|+..|+.|| |.++.+-..+|||||+|.+.+||..|++.|+|..+. +|++..
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~---- 93 (284)
T 3smz_A 19 FRNRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFVDKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQP---- 93 (284)
T ss_dssp HHCCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEEETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC----
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHCC-CEEEEEECCCCEEEEEECCHHHHHHHHHHCCCCEECCEEEEEEECC----
T ss_conf 78997799959998899999999998749-7799996678779999678999999999707985588279998438----
Q ss_pred CCCCCCCEECCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCEE-EC---CCCCCCCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 765336511021006998158980017899985300223387122-14---78887223200398899999999721035
Q 001454 560 TKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TD---LSCEGALLMEFRTPEEATTAMAHLRQHRK 635 (1075)
Q Consensus 560 ~~g~~~g~~~~~s~~lwVG~iss~~~keeLfsE~~s~~~kgpv~i-~d---lsek~~LpIEF~s~edA~~A~~~lr~~r~ 635 (1075)
..+.||||+++..+.+++|...+..++.+..+.+ .+ ...++.++|+|.+.++|..|+..|++...
T Consensus 94 -----------~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~ 162 (284)
T 3smz_A 94 -----------TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPL 162 (284)
T ss_dssp -----------CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred -----------CCCEEEECCCCCCCCHHHHHHHHHHCCCEEEEEEEEECCCCCCCEEEEEEECCHHHHHHHHHHHCCCEE
T ss_conf -----------998899908997478999999998639846899975089995444999998999999999998089776
Q ss_pred C-C-CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE-CC-----CCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 8-8-88899999987774333468988998543750-25-----65222243468899731343579
Q 001454 636 S-R-SNYLPPNTGPANAAMSQIDGARSVPAAPIHVD-IR-----SNRLGNISAGGFGSPHTAPFHSS 694 (1075)
Q Consensus 636 e-r-S~~~~r~~~~~~~~l~~~d~~~svPsn~Lwig-~p-----~~~l~NlA~~~fGei~rf~idfS 694 (1075)
. + ..+... -.........+..+|+|+ +| ++.|.. .+..||.+....+...
T Consensus 163 ~g~~i~v~~a--------~~~~~~~~~~~~~~l~v~nlp~~~~~~~~l~~-~f~~~G~i~~v~i~~~ 220 (284)
T 3smz_A 163 GPRTLYVHWT--------DAGQLTPALLHSRCLCVDRLPPGFNDVDALCR-ALSAVHSPTFCQLACG 220 (284)
T ss_dssp TTEECEEEEC--------CGGGCCTTTTSCSEEEEECCCTTCCCHHHHHH-HTCSSSCCSEEEEEEC
T ss_pred CCCEEEEEEC--------CCCCCCCCCCCCCEEEEECCCCCCCCHHHHHH-HHHCCCCEEEEEEEEC
T ss_conf 8947999988--------88889854478647998469965379999999-8517887699998778
No 5
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=1.00 E-value=1 Score=151.43 Aligned_cols=151 Identities=11% Similarity=0.193 Sum_probs=117.6
Q ss_pred CCCCCEEEECCCCCCCCHHHHH----HHHHCCCCCCEEEEEC---CCCEEEEEECCHHHHHHHHHHHCCCCEE----EEE
Q ss_conf 3467638841689852799999----9742039953699815---6744999924878999999762288301----899
Q 001454 484 FSASKQLWLGSFGPEASEAHIR----FQIDRFGPLEHFFFFP---IKGFALVEYINIIDAIRAREYIRNHFSW----RVK 552 (1075)
Q Consensus 484 ~~~s~~LWVGnL~~~vte~dL~----~~F~~fG~Le~v~~~~---~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~ 552 (1075)
..++|+||||||+.++++++|+ +.|++||.|.++++.+ .||||||+|.+.++|..|++.|+|..+. +|+
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 85 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQ 85 (282)
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCEEEEEEECCHHHHHHHHHHHCCCEECCCEEEEE
T ss_conf 99987799959998889999999999997336976899976799846289999799999999999966986179679999
Q ss_pred EEECCCCCC----C------------------------------------CCCC--------------------------
Q ss_conf 820378976----5------------------------------------3365--------------------------
Q 001454 553 FMDVGLGTK----G------------------------------------VING-------------------------- 566 (1075)
Q Consensus 553 F~r~~~g~~----g------------------------------------~~~g-------------------------- 566 (1075)
|++...... | ...|
T Consensus 86 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 165 (282)
T 3pgw_A 86 YAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYMP 165 (282)
T ss_pred EECCCCCHHHHHCCCCCCCHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 83268543333138844223555541102330156653136767765577899888887865456665445778888999
Q ss_pred ------------------------------------EECCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCEEECCCCC
Q ss_conf ------------------------------------11021006998158980017899985300223387122147888
Q 001454 567 ------------------------------------VAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCE 610 (1075)
Q Consensus 567 ------------------------------------~~~~~s~~lwVG~iss~~~keeLfsE~~s~~~kgpv~i~dlsek 610 (1075)
....+++.|||++++..+.+++|...+..++.+..+.+.. ..+
T Consensus 166 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~-~~~ 244 (282)
T 3pgw_A 166 PPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVP-GRH 244 (282)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCEEEEEEEC-CCC
T ss_conf 9988999998865567666765555743357667766799977899938997678999999998569858999953-997
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 7223200398899999999721035
Q 001454 611 GALLMEFRTPEEATTAMAHLRQHRK 635 (1075)
Q Consensus 611 ~~LpIEF~s~edA~~A~~~lr~~r~ 635 (1075)
+.++|||.+.++|..|+..|++...
T Consensus 245 g~afV~f~~~~~A~~A~~~l~g~~~ 269 (282)
T 3pgw_A 245 DIAFVEFDNEVQAGAARDALQGFKI 269 (282)
T ss_pred CEEEEEECCHHHHHHHHHHCCCCEE
T ss_conf 3899995999999999998389685
No 6
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=1.00 E-value=1 Score=150.29 Aligned_cols=151 Identities=15% Similarity=0.140 Sum_probs=121.8
Q ss_pred CCCCCEEEECCCCC-CCCHHHHHHHHHCCCCCCEEEEEC-CCCEEEEEECCHHHHHHHHHHHCCCCEE----EEEEEECC
Q ss_conf 34676388416898-527999999742039953699815-6744999924878999999762288301----89982037
Q 001454 484 FSASKQLWLGSFGP-EASEAHIRFQIDRFGPLEHFFFFP-IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDVG 557 (1075)
Q Consensus 484 ~~~s~~LWVGnL~~-~vte~dL~~~F~~fG~Le~v~~~~-~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~r~~ 557 (1075)
..++++||||||+. ++++++|+..|++||+|.++.+.+ .||||||+|.+.++|..|++.|+|..+. +|++++..
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~ 110 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQ 110 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTTSCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCSCC
T ss_pred CCCCCEEEEECCCCCCCCHHHHHHHHHHCCCEEEEEEEECCCCEEEEEECCHHHHHHHHHHHCCCEECCEEEEEEEECCC
T ss_conf 99978899948881439999999999827986899999789987999979999999999986897278857899980686
Q ss_pred C------CCCC--------------C-CCC-----EECCCCCEEEECCCCCCHHHHHHHHHHHCCC-CCCCCEEECCCCC
Q ss_conf 8------9765--------------3-365-----1102100699815898001789998530022-3387122147888
Q 001454 558 L------GTKG--------------V-ING-----VAVGSCFHVYVGNIPNQWAKDEILHESYKVV-YKGPYMVTDLSCE 610 (1075)
Q Consensus 558 ~------g~~g--------------~-~~g-----~~~~~s~~lwVG~iss~~~keeLfsE~~s~~-~kgpv~i~dlsek 610 (1075)
. +... . -.+ ....+++.|||++++..+.+++|...+..++ .+..+.+. -..+
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~-~~~~ 189 (229)
T 2adc_A 111 NVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFF-QKDR 189 (229)
T ss_dssp CCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEEC-SSST
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCEEEEEEE-ECCC
T ss_conf 545766666554301344568400248732234456789977799969996589999999998759970589999-7898
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 7223200398899999999721035
Q 001454 611 GALLMEFRTPEEATTAMAHLRQHRK 635 (1075)
Q Consensus 611 ~~LpIEF~s~edA~~A~~~lr~~r~ 635 (1075)
+.++|||++.++|..|+..|++...
T Consensus 190 g~afV~f~~~~~A~~Ai~~l~g~~~ 214 (229)
T 2adc_A 190 KMALIQMGSVEEAVQALIDLHNHDL 214 (229)
T ss_dssp TCEEEEESSHHHHHHHHHHHTTCBS
T ss_pred CEEEEEECCHHHHHHHHHHHCCCCC
T ss_conf 6899997989999999999778765
No 7
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=1.00 E-value=1 Score=149.36 Aligned_cols=141 Identities=17% Similarity=0.199 Sum_probs=119.7
Q ss_pred CCCEEEECCCCCCCCHHHHHHHHHCCCCCCEEEEECCC------CEEEEEECCHHHHHHHHHHHCCCCEE----EEEEEE
Q ss_conf 67638841689852799999974203995369981567------44999924878999999762288301----899820
Q 001454 486 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIK------GFALVEYINIIDAIRAREYIRNHFSW----RVKFMD 555 (1075)
Q Consensus 486 ~s~~LWVGnL~~~vte~dL~~~F~~fG~Le~v~~~~~r------gfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~r 555 (1075)
.+++||||||++++++++|+..|++||+|.++.+.+.+ |||||+|.+.++|..|++.|+|..+. +|++++
T Consensus 1 s~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 80 (167)
T 1fxl_A 1 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 80 (167)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEECCCCCCCCHHHHHHHHHHCCCEEEEEEEECCCCCCCEEEEEEEECCHHHHHHHHHHCCCCCCCCCEEEEEECC
T ss_conf 96469991899988999999999853996899997279999640489999778999999999727785579568998447
Q ss_pred CCCCCCCCCCCEECCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCEE-EC---CCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 3789765336511021006998158980017899985300223387122-14---7888722320039889999999972
Q 001454 556 VGLGTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TD---LSCEGALLMEFRTPEEATTAMAHLR 631 (1075)
Q Consensus 556 ~~~g~~g~~~g~~~~~s~~lwVG~iss~~~keeLfsE~~s~~~kgpv~i-~d---lsek~~LpIEF~s~edA~~A~~~lr 631 (1075)
+... ....+.|||++++..+.+++|...+..++.+..+.+ .+ ...++.++|+|.+.++|..|+..|+
T Consensus 81 ~~~~---------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~ 151 (167)
T 1fxl_A 81 PSSA---------SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN 151 (167)
T ss_dssp CCCG---------GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred CCCC---------CCCCCCEEECCCCCCCCHHHHHHHHHHCCCEEEEEEEECCCCCCCCCEEEEEECCHHHHHHHHHHHC
T ss_conf 7766---------6778748998999737899999999866997689987258999726569999688999999999964
Q ss_pred HCCC
Q ss_conf 1035
Q 001454 632 QHRK 635 (1075)
Q Consensus 632 ~~r~ 635 (1075)
++..
T Consensus 152 g~~~ 155 (167)
T 1fxl_A 152 GQKP 155 (167)
T ss_dssp TCCC
T ss_pred CCCC
T ss_conf 9856
No 8
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=1.00 E-value=1 Score=148.93 Aligned_cols=155 Identities=19% Similarity=0.195 Sum_probs=121.1
Q ss_pred CCCCCCCCEEEECCCCCCCCHHHHHHHHHCCCCCCEEEEEC------CCCEEEEEECCHHHHHHHHHHHCCCCEE--EEE
Q ss_conf 32234676388416898527999999742039953699815------6744999924878999999762288301--899
Q 001454 481 MDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW--RVK 552 (1075)
Q Consensus 481 ~dv~~~s~~LWVGnL~~~vte~dL~~~F~~fG~Le~v~~~~------~rgfAFVeF~~i~DAv~A~~~L~G~~~~--RI~ 552 (1075)
.+-...+++||||||+.++++++|+..|++||+|.++.+.+ .+|||||+|.+.++|..|++.|+|..+. +|+
T Consensus 22 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~ 101 (216)
T 2qfj_A 22 QGALAIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIK 101 (216)
T ss_dssp HHHHHHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCE
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCEEEEEEEECCCCCCCCCEEEEEECCHHHHHHHHHHCCCCEECCEEEE
T ss_conf 76667687799978999899999999998579978999866588886376699996899999999987467726991689
Q ss_pred EEECCCCCC--CCCC--CEECCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCEE-EC---CCCCCCCCCCCCCHHHHH
Q ss_conf 820378976--5336--511021006998158980017899985300223387122-14---788872232003988999
Q 001454 553 FMDVGLGTK--GVIN--GVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TD---LSCEGALLMEFRTPEEAT 624 (1075)
Q Consensus 553 F~r~~~g~~--g~~~--g~~~~~s~~lwVG~iss~~~keeLfsE~~s~~~kgpv~i-~d---lsek~~LpIEF~s~edA~ 624 (1075)
+.+.....+ .... .......+.|||++++..+.+++|...+..++.+..+.+ .+ ...++.++|+|.+.++|.
T Consensus 102 v~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~ 181 (216)
T 2qfj_A 102 VGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQ 181 (216)
T ss_dssp EECCSCCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHH
T ss_pred EECCCCCCCCCHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHCCCCEEEEEEEECCCCCCCCCEEEEEECCHHHHH
T ss_conf 85688843101023433002678757999378975889999999743698668998735889975756999966899999
Q ss_pred HHHHHHHHCCC
Q ss_conf 99999721035
Q 001454 625 TAMAHLRQHRK 635 (1075)
Q Consensus 625 ~A~~~lr~~r~ 635 (1075)
.|+..|++...
T Consensus 182 ~A~~~l~g~~~ 192 (216)
T 2qfj_A 182 DAVSSMNLFDL 192 (216)
T ss_dssp HHHHHHTTCBC
T ss_pred HHHHHCCCCEE
T ss_conf 99997368772
No 9
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=1.00 E-value=1 Score=148.07 Aligned_cols=143 Identities=17% Similarity=0.210 Sum_probs=118.2
Q ss_pred CCCCEEEECCCCCCCCHHHHHHHHHCCCCCCEEEEE--------CCCCEEEEEECCHHHHHHHHHHHCCCCEE-------
Q ss_conf 467638841689852799999974203995369981--------56744999924878999999762288301-------
Q 001454 485 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF--------PIKGFALVEYINIIDAIRAREYIRNHFSW------- 549 (1075)
Q Consensus 485 ~~s~~LWVGnL~~~vte~dL~~~F~~fG~Le~v~~~--------~~rgfAFVeF~~i~DAv~A~~~L~G~~~~------- 549 (1075)
+.+++||||||+.++++++|+..|++||+|.++++. ..||||||+|.+.++|..|++.|+|..+.
T Consensus 1 s~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~ 80 (175)
T 3nmr_A 1 SDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPI 80 (175)
T ss_dssp CCCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCEEEEEEECCHHHHHHHHHHHCCCEECCCCCCCE
T ss_conf 98549999689997899999999985798789999854788988730699999788999999999855957816885344
Q ss_pred EEEEEECCCCCCCCCCCEECCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCEE-EC--CCCCCCCCCCCCCHHHHHHH
Q ss_conf 8998203789765336511021006998158980017899985300223387122-14--78887223200398899999
Q 001454 550 RVKFMDVGLGTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TD--LSCEGALLMEFRTPEEATTA 626 (1075)
Q Consensus 550 RI~F~r~~~g~~g~~~g~~~~~s~~lwVG~iss~~~keeLfsE~~s~~~kgpv~i-~d--lsek~~LpIEF~s~edA~~A 626 (1075)
++.+.+.... .....+.|||++++..+.+++|...+..++.+..+.+ .+ ...++.++|+|.+.++|..|
T Consensus 81 ~~~~~~~~~~--------~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A 152 (175)
T 3nmr_A 81 QMKPADSEKN--------NAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTA 152 (175)
T ss_dssp EEEECGGGCC--------SCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHH
T ss_pred EECCCCCCCC--------CCCCCCEEEECCCCCCCCHHHHHHHHHHCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHH
T ss_conf 8731444643--------35788769991799868999999999717887999988889998888899997888999999
Q ss_pred HHHHHHCCC
Q ss_conf 999721035
Q 001454 627 MAHLRQHRK 635 (1075)
Q Consensus 627 ~~~lr~~r~ 635 (1075)
+..|++...
T Consensus 153 ~~~l~g~~~ 161 (175)
T 3nmr_A 153 IKAMHQAQT 161 (175)
T ss_dssp HHHHTTSCC
T ss_pred HHHHCCCCC
T ss_conf 998557730
No 10
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=1.00 E-value=1 Score=148.02 Aligned_cols=142 Identities=16% Similarity=0.207 Sum_probs=120.0
Q ss_pred CCCCEEEECCCCCCCCHHHHHHHHHCCCCCCEEEEEC------CCCEEEEEECCHHHHHHHHHHHCCCCEE----EEEEE
Q ss_conf 4676388416898527999999742039953699815------6744999924878999999762288301----89982
Q 001454 485 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 554 (1075)
Q Consensus 485 ~~s~~LWVGnL~~~vte~dL~~~F~~fG~Le~v~~~~------~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~ 554 (1075)
.++++||||||+.++++++|+..|+.||+|.++.+.+ .||||||+|.+.++|..|++.|+|..+. +|+++
T Consensus 1 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 80 (168)
T 1b7f_A 1 ASNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYA 80 (168)
T ss_dssp -CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHCCCEEEEEEEEECCCCCCCEEEEEEECCHHHHHHHHHHCCCCEECCCEEEEEEC
T ss_conf 99647999579999999999999982499569999872899950649999979999999999865798718968899864
Q ss_pred ECCCCCCCCCCCEECCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCEE-E---CCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 03789765336511021006998158980017899985300223387122-1---4788872232003988999999997
Q 001454 555 DVGLGTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-T---DLSCEGALLMEFRTPEEATTAMAHL 630 (1075)
Q Consensus 555 r~~~g~~g~~~g~~~~~s~~lwVG~iss~~~keeLfsE~~s~~~kgpv~i-~---dlsek~~LpIEF~s~edA~~A~~~l 630 (1075)
++... ....+.|||++++..+.+++|...+..++.+..+.+ . ....++.++|+|.+.++|..|+..|
T Consensus 81 ~~~~~---------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l 151 (168)
T 1b7f_A 81 RPGGE---------SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISAL 151 (168)
T ss_dssp CCCSS---------TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHH
T ss_pred CCCCC---------CCCCCCEEEECCCCCCCHHHHHHHHHCCCCEEEEEEEECCCCCCCCEEEEEEECCHHHHHHHHHHH
T ss_conf 78866---------678877899289997888999976524773889999872778874108999989999999999986
Q ss_pred HHCCC
Q ss_conf 21035
Q 001454 631 RQHRK 635 (1075)
Q Consensus 631 r~~r~ 635 (1075)
++...
T Consensus 152 ~g~~~ 156 (168)
T 1b7f_A 152 NNVIP 156 (168)
T ss_dssp TTCCC
T ss_pred CCCEE
T ss_conf 69786
Done!