Query 001455
Match_columns 1074
No_of_seqs 819 out of 3736
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 01:15:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001455.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001455hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0271 Notchless-like WD40 re 100.0 1.7E-36 3.7E-41 329.4 25.3 273 792-1073 113-438 (480)
2 KOG0272 U4/U6 small nuclear ri 100.0 2.1E-33 4.4E-38 309.4 23.0 272 792-1073 173-459 (459)
3 KOG0293 WD40 repeat-containing 100.0 5.9E-33 1.3E-37 304.1 24.7 343 700-1073 151-512 (519)
4 KOG0271 Notchless-like WD40 re 100.0 1.6E-32 3.5E-37 298.5 24.7 273 792-1072 155-479 (480)
5 KOG0279 G protein beta subunit 100.0 1.1E-27 2.4E-32 253.2 32.7 274 790-1073 11-312 (315)
6 KOG0286 G-protein beta subunit 100.0 1.1E-27 2.3E-32 254.4 32.3 274 790-1072 51-343 (343)
7 KOG0315 G-protein beta subunit 100.0 6.4E-28 1.4E-32 251.2 28.6 259 806-1073 12-287 (311)
8 KOG0295 WD40 repeat-containing 100.0 1.7E-28 3.7E-33 266.6 23.5 273 792-1073 106-405 (406)
9 KOG0281 Beta-TrCP (transducin 100.0 1.5E-29 3.3E-34 272.1 14.8 267 792-1074 195-477 (499)
10 KOG0315 G-protein beta subunit 100.0 2.3E-27 5E-32 247.0 28.4 267 779-1054 30-308 (311)
11 KOG0273 Beta-transducin family 100.0 4.7E-27 1E-31 262.0 31.3 269 794-1073 235-522 (524)
12 KOG0265 U5 snRNP-specific prot 100.0 3.2E-27 6.8E-32 251.8 28.0 272 790-1070 43-334 (338)
13 cd00200 WD40 WD40 domain, foun 100.0 4.6E-26 1E-30 242.9 36.7 271 792-1072 7-289 (289)
14 KOG0285 Pleiotropic regulator 100.0 1.4E-27 3E-32 258.4 24.7 272 789-1072 146-437 (460)
15 KOG0263 Transcription initiati 100.0 1.6E-27 3.4E-32 280.1 24.3 235 794-1073 378-648 (707)
16 KOG0272 U4/U6 small nuclear ri 100.0 5.6E-28 1.2E-32 266.6 18.5 232 792-1033 215-458 (459)
17 KOG0319 WD40-repeat-containing 99.9 1.4E-26 3.1E-31 269.2 25.5 288 779-1073 137-576 (775)
18 KOG0282 mRNA splicing factor [ 99.9 3.6E-27 7.8E-32 264.0 18.9 275 791-1072 211-503 (503)
19 KOG0273 Beta-transducin family 99.9 3.3E-26 7.2E-31 255.3 26.4 273 792-1073 176-481 (524)
20 KOG0313 Microtubule binding pr 99.9 3.5E-26 7.5E-31 249.8 25.1 270 792-1072 103-416 (423)
21 KOG0286 G-protein beta subunit 99.9 2E-25 4.4E-30 237.1 29.0 238 829-1074 48-303 (343)
22 PLN00181 protein SPA1-RELATED; 99.9 8.2E-25 1.8E-29 276.8 39.8 274 792-1074 481-793 (793)
23 KOG0316 Conserved WD40 repeat- 99.9 1.2E-25 2.7E-30 232.5 26.1 269 790-1071 13-296 (307)
24 KOG0266 WD40 repeat-containing 99.9 1.7E-25 3.7E-30 265.9 31.2 277 792-1073 157-453 (456)
25 KOG0319 WD40-repeat-containing 99.9 2.7E-25 5.8E-30 258.7 26.8 271 792-1072 321-617 (775)
26 KOG0645 WD40 repeat protein [G 99.9 3.5E-24 7.7E-29 225.9 31.7 275 788-1073 8-310 (312)
27 KOG0291 WD40-repeat-containing 99.9 3E-24 6.5E-29 249.7 33.6 279 779-1073 297-611 (893)
28 KOG0276 Vesicle coat complex C 99.9 4.4E-25 9.4E-30 252.1 25.9 269 792-1070 11-295 (794)
29 KOG0284 Polyadenylation factor 99.9 5.1E-26 1.1E-30 250.2 16.6 269 794-1072 96-378 (464)
30 KOG0281 Beta-TrCP (transducin 99.9 3.3E-26 7.2E-31 246.5 13.2 228 835-1073 196-427 (499)
31 KOG0263 Transcription initiati 99.9 1.5E-24 3.2E-29 255.2 27.2 200 790-1036 447-650 (707)
32 KOG0274 Cdc4 and related F-box 99.9 2.9E-24 6.4E-29 256.8 29.8 269 792-1073 206-481 (537)
33 KOG0318 WD40 repeat stress pro 99.9 2E-23 4.3E-28 235.6 34.2 280 791-1073 187-559 (603)
34 KOG0296 Angio-associated migra 99.9 1.6E-23 3.6E-28 228.2 32.1 277 792-1073 62-397 (399)
35 KOG0279 G protein beta subunit 99.9 5.1E-24 1.1E-28 225.5 27.2 240 828-1073 7-261 (315)
36 KOG1407 WD40 repeat protein [F 99.9 6.1E-24 1.3E-28 223.0 26.8 274 791-1071 17-308 (313)
37 KOG0288 WD40 repeat protein Ti 99.9 3.3E-25 7.1E-30 244.2 16.9 273 791-1072 172-459 (459)
38 KOG0306 WD40-repeat-containing 99.9 6.6E-24 1.4E-28 246.8 28.0 269 792-1072 371-662 (888)
39 KOG0318 WD40 repeat stress pro 99.9 2.6E-23 5.7E-28 234.5 30.6 281 788-1073 229-601 (603)
40 KOG0292 Vesicle coat complex C 99.9 5.6E-24 1.2E-28 250.0 25.9 275 793-1072 8-319 (1202)
41 KOG0278 Serine/threonine kinas 99.9 1.1E-24 2.3E-29 227.1 17.2 270 790-1073 10-296 (334)
42 KOG0291 WD40-repeat-containing 99.9 7.3E-23 1.6E-27 238.3 33.0 271 794-1073 265-549 (893)
43 KOG0295 WD40 repeat-containing 99.9 1.1E-23 2.3E-28 229.5 20.4 259 807-1073 79-363 (406)
44 KOG0285 Pleiotropic regulator 99.9 2.4E-23 5.3E-28 225.7 20.5 236 828-1072 143-387 (460)
45 KOG0284 Polyadenylation factor 99.9 4.1E-24 8.8E-29 235.3 13.7 230 836-1073 96-336 (464)
46 KOG0301 Phospholipase A2-activ 99.9 2.1E-22 4.5E-27 233.4 27.2 269 791-1073 11-287 (745)
47 cd00200 WD40 WD40 domain, foun 99.9 1.2E-21 2.6E-26 208.9 30.7 236 830-1073 3-248 (289)
48 KOG0643 Translation initiation 99.9 4E-22 8.6E-27 209.9 25.9 271 790-1071 6-314 (327)
49 KOG0268 Sof1-like rRNA process 99.9 3.6E-23 7.8E-28 225.0 15.8 268 791-1073 63-344 (433)
50 PLN00181 protein SPA1-RELATED; 99.9 2.8E-21 6E-26 244.8 34.2 237 793-1034 531-792 (793)
51 KOG0276 Vesicle coat complex C 99.9 1.1E-21 2.4E-26 224.6 26.3 266 756-1031 17-295 (794)
52 KOG0292 Vesicle coat complex C 99.9 1.2E-21 2.6E-26 230.6 26.7 244 792-1044 49-330 (1202)
53 KOG0266 WD40 repeat-containing 99.9 1.3E-21 2.9E-26 232.6 27.5 236 791-1035 200-454 (456)
54 KOG0645 WD40 repeat protein [G 99.9 4.3E-21 9.4E-26 202.7 27.6 238 827-1073 5-260 (312)
55 KOG0275 Conserved WD40 repeat- 99.9 1.6E-22 3.5E-27 216.3 16.7 276 792-1073 211-508 (508)
56 KOG0306 WD40-repeat-containing 99.9 6.8E-21 1.5E-25 222.0 30.1 273 794-1073 65-483 (888)
57 KOG0647 mRNA export protein (c 99.9 2.2E-21 4.9E-26 207.4 24.1 262 791-1062 24-311 (347)
58 KOG0274 Cdc4 and related F-box 99.9 3.7E-21 8E-26 230.3 27.2 251 779-1044 233-491 (537)
59 KOG0278 Serine/threonine kinas 99.9 2.4E-22 5.2E-27 209.6 14.7 250 775-1040 45-302 (334)
60 KOG1446 Histone H3 (Lys4) meth 99.9 5.2E-20 1.1E-24 198.7 32.7 273 793-1073 13-302 (311)
61 KOG0293 WD40 repeat-containing 99.9 1.2E-21 2.6E-26 215.7 19.6 237 789-1036 264-514 (519)
62 KOG0265 U5 snRNP-specific prot 99.9 6E-21 1.3E-25 204.1 22.5 238 828-1073 39-295 (338)
63 KOG0316 Conserved WD40 repeat- 99.9 5.2E-21 1.1E-25 198.4 21.0 236 829-1074 10-257 (307)
64 KOG0313 Microtubule binding pr 99.9 8.6E-21 1.9E-25 207.8 23.3 247 780-1035 135-418 (423)
65 KOG0277 Peroxisomal targeting 99.9 6.7E-21 1.4E-25 199.6 21.2 269 798-1073 12-308 (311)
66 KOG0283 WD40 repeat-containing 99.9 5.6E-21 1.2E-25 226.9 22.5 240 792-1036 265-577 (712)
67 KOG1036 Mitotic spindle checkp 99.9 4.6E-20 1E-24 198.2 26.5 262 792-1064 11-294 (323)
68 KOG0305 Anaphase promoting com 99.9 3.4E-20 7.3E-25 215.7 26.9 265 800-1074 183-461 (484)
69 KOG0296 Angio-associated migra 99.9 9.4E-20 2E-24 199.1 27.2 232 792-1035 104-398 (399)
70 KOG0772 Uncharacterized conser 99.9 2.8E-20 6.1E-25 209.5 23.3 276 792-1071 165-484 (641)
71 KOG0294 WD40 repeat-containing 99.9 1.4E-19 3E-24 194.7 26.1 252 790-1053 39-304 (362)
72 KOG0277 Peroxisomal targeting 99.9 1.2E-20 2.7E-25 197.7 17.5 234 794-1034 60-308 (311)
73 KOG0640 mRNA cleavage stimulat 99.9 4.6E-20 1E-24 197.2 21.9 275 792-1072 110-424 (430)
74 KOG0310 Conserved WD40 repeat- 99.8 5.6E-20 1.2E-24 207.0 23.1 265 794-1070 26-305 (487)
75 PTZ00420 coronin; Provisional 99.8 5.2E-19 1.1E-23 212.7 32.8 225 809-1073 49-292 (568)
76 KOG1408 WD40 repeat protein [F 99.8 7.9E-20 1.7E-24 211.1 24.0 279 792-1073 367-712 (1080)
77 KOG0289 mRNA splicing factor [ 99.8 1.8E-19 3.9E-24 200.0 25.9 269 794-1072 219-504 (506)
78 KOG0283 WD40 repeat-containing 99.8 4.3E-20 9.3E-25 219.5 22.4 237 829-1073 259-575 (712)
79 KOG0305 Anaphase promoting com 99.8 1.1E-19 2.3E-24 211.6 23.9 235 792-1037 215-463 (484)
80 PTZ00421 coronin; Provisional 99.8 1.5E-18 3.3E-23 207.2 33.1 247 804-1056 32-313 (493)
81 KOG0308 Conserved WD40 repeat- 99.8 2.4E-20 5.3E-25 214.9 16.8 262 804-1072 37-325 (735)
82 KOG0282 mRNA splicing factor [ 99.8 1.7E-20 3.8E-25 210.7 14.9 238 828-1072 206-460 (503)
83 KOG0973 Histone transcription 99.8 5.2E-19 1.1E-23 214.7 28.2 280 792-1072 11-353 (942)
84 TIGR03866 PQQ_ABC_repeats PQQ- 99.8 7E-18 1.5E-22 185.7 34.0 259 805-1073 2-278 (300)
85 KOG0299 U3 snoRNP-associated p 99.8 6.5E-19 1.4E-23 197.2 25.6 271 791-1071 139-453 (479)
86 KOG0288 WD40 repeat protein Ti 99.8 6.7E-20 1.4E-24 202.6 17.0 234 792-1032 217-458 (459)
87 KOG0641 WD40 repeat protein [G 99.8 3.5E-17 7.5E-22 168.8 31.7 277 793-1072 31-347 (350)
88 KOG0310 Conserved WD40 repeat- 99.8 1.3E-18 2.9E-23 196.0 23.0 232 793-1034 67-308 (487)
89 PTZ00421 coronin; Provisional 99.8 6.6E-18 1.4E-22 201.7 30.5 221 791-1017 72-315 (493)
90 KOG0300 WD40 repeat-containing 99.8 1.1E-18 2.3E-23 186.9 21.1 276 789-1074 143-476 (481)
91 KOG0308 Conserved WD40 repeat- 99.8 4.4E-19 9.6E-24 204.7 18.7 231 841-1072 29-283 (735)
92 KOG0264 Nucleosome remodeling 99.8 1.5E-18 3.4E-23 194.4 22.1 247 792-1073 122-403 (422)
93 PTZ00420 coronin; Provisional 99.8 1.5E-17 3.4E-22 200.1 32.2 222 791-1057 71-317 (568)
94 KOG1539 WD repeat protein [Gen 99.8 2.5E-17 5.3E-22 194.7 32.7 276 791-1072 199-646 (910)
95 KOG1407 WD40 repeat protein [F 99.8 1.8E-18 3.9E-23 182.2 20.2 232 830-1070 14-257 (313)
96 KOG0639 Transducin-like enhanc 99.8 1.3E-18 2.9E-23 195.1 20.2 272 792-1073 417-703 (705)
97 KOG1332 Vesicle coat complex C 99.8 1.6E-18 3.5E-23 181.0 18.4 241 789-1034 6-285 (299)
98 KOG0294 WD40 repeat-containing 99.8 1.9E-17 4.1E-22 178.4 25.2 253 807-1073 4-280 (362)
99 KOG2445 Nuclear pore complex c 99.8 3E-17 6.6E-22 176.3 26.3 245 791-1073 10-317 (361)
100 KOG0275 Conserved WD40 repeat- 99.8 7.1E-19 1.5E-23 188.6 13.6 234 792-1033 261-507 (508)
101 KOG0301 Phospholipase A2-activ 99.8 8.1E-18 1.8E-22 195.7 22.6 227 792-1035 55-288 (745)
102 KOG2055 WD40 repeat protein [G 99.8 2E-17 4.3E-22 185.3 24.3 276 791-1073 210-511 (514)
103 KOG0643 Translation initiation 99.8 2.2E-17 4.9E-22 174.4 23.0 231 831-1063 5-250 (327)
104 KOG0640 mRNA cleavage stimulat 99.8 8.7E-18 1.9E-22 180.0 19.7 214 829-1046 105-346 (430)
105 KOG0289 mRNA splicing factor [ 99.8 1.9E-17 4.1E-22 184.1 22.7 230 837-1072 220-460 (506)
106 KOG0650 WD40 repeat nucleolar 99.8 4.4E-17 9.5E-22 186.6 26.0 270 792-1071 398-732 (733)
107 KOG0299 U3 snoRNP-associated p 99.8 2.4E-17 5.2E-22 184.8 21.5 228 792-1024 200-444 (479)
108 TIGR03866 PQQ_ABC_repeats PQQ- 99.8 7.8E-16 1.7E-20 169.5 33.1 256 796-1055 32-299 (300)
109 KOG2048 WD40 repeat protein [G 99.8 5.9E-16 1.3E-20 180.2 32.8 272 794-1070 25-315 (691)
110 KOG1036 Mitotic spindle checkp 99.8 1E-16 2.2E-21 172.7 23.1 228 792-1025 52-294 (323)
111 KOG0646 WD40 repeat protein [G 99.8 2E-17 4.3E-22 185.7 18.5 226 794-1054 81-327 (476)
112 KOG2096 WD40 repeat protein [G 99.8 1.7E-16 3.8E-21 170.8 24.3 288 781-1071 73-399 (420)
113 KOG1446 Histone H3 (Lys4) meth 99.7 5.7E-16 1.2E-20 167.7 28.4 234 793-1035 55-303 (311)
114 KOG0300 WD40 repeat-containing 99.7 5.3E-17 1.1E-21 174.1 19.8 238 792-1037 188-478 (481)
115 KOG0647 mRNA export protein (c 99.7 1.6E-16 3.4E-21 170.6 22.9 230 789-1024 67-312 (347)
116 KOG1274 WD40 repeat protein [G 99.7 2.2E-16 4.8E-21 188.6 26.1 234 833-1073 10-261 (933)
117 KOG0973 Histone transcription 99.7 1.1E-16 2.3E-21 194.8 23.4 239 792-1037 67-357 (942)
118 KOG4283 Transcription-coupled 99.7 3.9E-16 8.5E-21 166.6 24.3 277 792-1073 41-364 (397)
119 KOG1273 WD40 repeat protein [G 99.7 3.5E-16 7.6E-21 168.3 23.4 265 797-1073 26-321 (405)
120 KOG1332 Vesicle coat complex C 99.7 1E-16 2.2E-21 167.7 18.6 236 833-1073 8-285 (299)
121 KOG4328 WD40 protein [Function 99.7 2.5E-16 5.4E-21 176.4 22.7 278 792-1072 184-493 (498)
122 KOG0321 WD40 repeat-containing 99.7 2.9E-16 6.3E-21 181.4 23.8 267 806-1073 66-390 (720)
123 KOG0269 WD40 repeat-containing 99.7 3.8E-17 8.3E-22 191.9 16.9 230 796-1069 89-335 (839)
124 KOG0772 Uncharacterized conser 99.7 7.4E-17 1.6E-21 182.2 18.4 244 829-1073 160-444 (641)
125 KOG1063 RNA polymerase II elon 99.7 3.7E-16 8E-21 181.9 24.3 283 791-1073 264-647 (764)
126 KOG1274 WD40 repeat protein [G 99.7 1.4E-15 3E-20 181.9 29.3 256 792-1055 11-279 (933)
127 KOG0268 Sof1-like rRNA process 99.7 1.9E-17 4.1E-22 180.8 12.3 235 829-1073 59-301 (433)
128 KOG0641 WD40 repeat protein [G 99.7 2.9E-15 6.3E-20 154.7 27.4 236 792-1035 87-349 (350)
129 KOG0646 WD40 repeat protein [G 99.7 4.5E-16 9.7E-21 175.0 23.2 259 809-1073 12-306 (476)
130 KOG2106 Uncharacterized conser 99.7 8.3E-15 1.8E-19 165.5 29.3 265 794-1073 246-520 (626)
131 KOG0302 Ribosome Assembly prot 99.7 1E-15 2.2E-20 168.2 21.1 241 792-1073 149-437 (440)
132 KOG0642 Cell-cycle nuclear pro 99.7 3.1E-16 6.7E-21 179.6 17.1 261 779-1046 284-572 (577)
133 KOG2096 WD40 repeat protein [G 99.7 1.6E-15 3.5E-20 163.4 20.4 223 818-1073 65-307 (420)
134 KOG1408 WD40 repeat protein [F 99.7 9.4E-16 2E-20 177.8 18.7 239 792-1036 457-714 (1080)
135 KOG0267 Microtubule severing p 99.7 9.2E-17 2E-21 187.4 9.3 226 792-1027 26-260 (825)
136 KOG0264 Nucleosome remodeling 99.7 1.7E-15 3.7E-20 170.2 18.7 199 875-1073 120-346 (422)
137 KOG0321 WD40 repeat-containing 99.7 2.3E-15 5E-20 174.0 20.2 242 791-1037 97-393 (720)
138 KOG2106 Uncharacterized conser 99.7 1.1E-13 2.4E-18 156.6 31.5 265 794-1073 200-476 (626)
139 KOG0270 WD40 repeat-containing 99.6 3.1E-15 6.8E-20 167.4 18.4 231 804-1040 192-454 (463)
140 KOG1539 WD repeat protein [Gen 99.6 1.1E-13 2.4E-18 164.2 31.7 273 796-1073 161-522 (910)
141 KOG0267 Microtubule severing p 99.6 3E-16 6.6E-21 183.1 9.9 243 807-1065 7-259 (825)
142 KOG0307 Vesicle coat complex C 99.6 1.2E-15 2.6E-20 186.4 14.1 240 794-1073 64-326 (1049)
143 KOG0269 WD40 repeat-containing 99.6 4E-15 8.7E-20 175.1 17.9 228 839-1073 42-295 (839)
144 KOG4378 Nuclear protein COP1 [ 99.6 1.5E-14 3.3E-19 162.8 20.7 255 811-1073 9-279 (673)
145 KOG4283 Transcription-coupled 99.6 3.4E-14 7.3E-19 152.0 21.8 235 833-1073 40-333 (397)
146 KOG1063 RNA polymerase II elon 99.6 7.6E-14 1.7E-18 162.9 26.4 286 785-1073 45-390 (764)
147 COG2319 FOG: WD40 repeat [Gene 99.6 1.9E-12 4.1E-17 144.2 37.0 275 791-1073 152-441 (466)
148 KOG0322 G-protein beta subunit 99.6 5.4E-15 1.2E-19 156.3 14.8 278 792-1073 12-322 (323)
149 KOG4378 Nuclear protein COP1 [ 99.6 1.8E-14 4E-19 162.2 19.4 251 797-1056 37-303 (673)
150 KOG2048 WD40 repeat protein [G 99.6 1.2E-13 2.7E-18 161.1 26.4 232 835-1072 24-273 (691)
151 COG2319 FOG: WD40 repeat [Gene 99.6 3.4E-12 7.5E-17 142.1 37.2 274 792-1073 63-358 (466)
152 KOG1538 Uncharacterized conser 99.6 4.7E-14 1E-18 162.7 22.2 264 796-1073 14-292 (1081)
153 KOG0302 Ribosome Assembly prot 99.6 2.1E-14 4.6E-19 157.9 18.3 215 832-1073 147-377 (440)
154 KOG0270 WD40 repeat-containing 99.6 9.7E-14 2.1E-18 155.6 23.6 230 839-1074 176-449 (463)
155 KOG1188 WD40 repeat protein [G 99.6 5.6E-14 1.2E-18 153.3 20.6 262 805-1072 41-344 (376)
156 KOG0639 Transducin-like enhanc 99.6 1.2E-14 2.5E-19 163.8 15.7 231 794-1034 465-703 (705)
157 KOG0650 WD40 repeat nucleolar 99.6 8.7E-14 1.9E-18 160.0 20.3 234 829-1072 393-678 (733)
158 PRK11028 6-phosphogluconolacto 99.6 3.5E-12 7.5E-17 145.4 32.6 266 807-1073 5-303 (330)
159 KOG4227 WD40 repeat protein [G 99.5 4.8E-13 1E-17 147.1 22.1 278 792-1073 54-386 (609)
160 KOG1445 Tumor-specific antigen 99.5 1.5E-13 3.2E-18 158.0 18.8 139 928-1066 642-786 (1012)
161 KOG1587 Cytoplasmic dynein int 99.5 8.7E-13 1.9E-17 157.9 26.1 258 813-1073 221-515 (555)
162 KOG0644 Uncharacterized conser 99.5 1.7E-14 3.7E-19 170.2 11.2 262 792-1071 188-465 (1113)
163 KOG1007 WD repeat protein TSSC 99.5 1.3E-12 2.8E-17 139.8 23.6 241 792-1071 61-358 (370)
164 KOG2055 WD40 repeat protein [G 99.5 2.5E-13 5.5E-18 152.7 19.1 242 794-1035 257-512 (514)
165 KOG1334 WD40 repeat protein [G 99.5 5.6E-14 1.2E-18 158.7 13.8 281 791-1074 139-466 (559)
166 KOG1034 Transcriptional repres 99.5 2.3E-13 4.9E-18 147.8 17.6 243 790-1035 85-383 (385)
167 KOG1517 Guanine nucleotide bin 99.5 8.8E-13 1.9E-17 159.2 24.3 270 796-1073 1066-1380(1387)
168 KOG2919 Guanine nucleotide-bin 99.5 5.1E-13 1.1E-17 144.7 20.1 235 839-1073 52-326 (406)
169 KOG1240 Protein kinase contain 99.5 1.9E-12 4.2E-17 158.6 27.2 252 777-1035 1032-1334(1431)
170 KOG1517 Guanine nucleotide bin 99.5 5.7E-13 1.2E-17 160.8 22.3 242 793-1037 1108-1383(1387)
171 KOG4328 WD40 protein [Function 99.5 7.6E-13 1.7E-17 148.8 21.7 240 829-1073 179-449 (498)
172 KOG0649 WD40 repeat protein [G 99.5 1.8E-12 4E-17 135.9 22.9 224 838-1072 12-272 (325)
173 KOG0290 Conserved WD40 repeat- 99.5 2.7E-12 5.9E-17 137.6 21.6 266 795-1065 45-357 (364)
174 KOG2445 Nuclear pore complex c 99.5 9.1E-12 2E-16 134.6 24.2 238 776-1051 46-337 (361)
175 KOG2110 Uncharacterized conser 99.5 1.9E-11 4.2E-16 134.9 26.7 232 836-1073 5-247 (391)
176 KOG1963 WD40 repeat protein [G 99.4 2.9E-11 6.3E-16 145.4 28.7 289 783-1073 194-537 (792)
177 KOG0303 Actin-binding protein 99.4 3.6E-12 7.7E-17 141.2 18.7 201 790-996 77-297 (472)
178 KOG2919 Guanine nucleotide-bin 99.4 8.7E-12 1.9E-16 135.3 21.0 259 797-1063 52-359 (406)
179 KOG1034 Transcriptional repres 99.4 1.8E-11 3.9E-16 133.3 22.6 283 787-1074 31-383 (385)
180 KOG1188 WD40 repeat protein [G 99.4 3.1E-12 6.8E-17 139.8 15.9 242 792-1034 68-345 (376)
181 KOG1009 Chromatin assembly com 99.4 3.7E-11 8E-16 134.0 24.1 276 794-1070 13-368 (434)
182 KOG0642 Cell-cycle nuclear pro 99.4 3.2E-12 6.9E-17 147.1 15.1 240 829-1073 287-560 (577)
183 KOG1273 WD40 repeat protein [G 99.4 5.1E-11 1.1E-15 129.0 23.3 241 791-1036 62-323 (405)
184 PRK11028 6-phosphogluconolacto 99.4 2.8E-10 6E-15 129.8 30.6 259 794-1054 34-327 (330)
185 KOG0649 WD40 repeat protein [G 99.4 9.8E-11 2.1E-15 123.1 23.8 265 797-1072 13-314 (325)
186 KOG0307 Vesicle coat complex C 99.4 1.8E-12 3.9E-17 159.1 11.9 204 791-1038 113-330 (1049)
187 KOG1587 Cytoplasmic dynein int 99.4 4E-11 8.8E-16 143.8 22.9 238 794-1036 242-517 (555)
188 KOG1538 Uncharacterized conser 99.4 1.2E-11 2.6E-16 143.3 17.3 225 792-1035 51-293 (1081)
189 KOG0303 Actin-binding protein 99.4 8.7E-11 1.9E-15 130.4 23.1 204 831-1073 76-293 (472)
190 PRK01742 tolB translocation pr 99.3 5.1E-11 1.1E-15 141.2 22.1 229 813-1056 183-425 (429)
191 KOG1240 Protein kinase contain 99.3 1E-10 2.2E-15 143.8 24.8 247 819-1073 1034-1333(1431)
192 KOG2394 WD40 protein DMR-N9 [G 99.3 8.4E-11 1.8E-15 134.6 20.6 216 838-1055 125-383 (636)
193 KOG1009 Chromatin assembly com 99.3 7.1E-11 1.5E-15 131.7 19.5 241 790-1039 61-376 (434)
194 KOG0771 Prolactin regulatory e 99.3 4.4E-11 9.6E-16 134.2 15.9 200 798-1034 148-353 (398)
195 KOG1007 WD repeat protein TSSC 99.3 1.3E-10 2.9E-15 124.6 18.5 215 857-1073 39-288 (370)
196 KOG1272 WD40-repeat-containing 99.3 2.4E-11 5.1E-16 137.1 11.4 226 838-1072 131-360 (545)
197 KOG2110 Uncharacterized conser 99.2 6.4E-09 1.4E-13 115.4 29.8 229 794-1036 5-249 (391)
198 KOG2111 Uncharacterized conser 99.2 2.1E-09 4.7E-14 117.1 25.6 230 838-1073 7-255 (346)
199 KOG1963 WD40 repeat protein [G 99.2 9.1E-10 2E-14 132.7 25.0 267 801-1072 23-320 (792)
200 KOG4497 Uncharacterized conser 99.2 3.7E-09 8.1E-14 115.3 25.6 270 795-1067 49-425 (447)
201 KOG1310 WD40 repeat protein [G 99.2 1.6E-10 3.4E-15 132.2 15.1 231 791-1043 47-311 (758)
202 KOG3881 Uncharacterized conser 99.2 5.1E-10 1.1E-14 124.6 18.4 255 793-1055 54-340 (412)
203 KOG1524 WD40 repeat-containing 99.2 4E-10 8.6E-15 128.7 17.8 202 805-1032 76-283 (737)
204 KOG2111 Uncharacterized conser 99.2 2.3E-09 4.9E-14 117.0 22.8 232 796-1036 7-257 (346)
205 KOG4227 WD40 repeat protein [G 99.2 7.3E-10 1.6E-14 122.4 19.0 240 830-1073 50-321 (609)
206 PRK03629 tolB translocation pr 99.2 6.5E-09 1.4E-13 123.4 28.6 230 814-1056 179-427 (429)
207 KOG1523 Actin-related protein 99.2 1.1E-09 2.5E-14 119.2 19.6 205 794-1038 10-239 (361)
208 KOG1524 WD40 repeat-containing 99.2 1.1E-09 2.4E-14 125.1 19.4 253 792-1070 12-282 (737)
209 KOG0644 Uncharacterized conser 99.2 4.3E-11 9.3E-16 142.1 7.5 234 791-1039 229-472 (1113)
210 KOG1334 WD40 repeat protein [G 99.1 3.9E-10 8.4E-15 128.1 14.4 241 829-1072 135-422 (559)
211 PRK01742 tolB translocation pr 99.1 4.4E-09 9.5E-14 124.8 21.8 209 792-1016 201-426 (429)
212 KOG2321 WD40 repeat protein [G 99.1 4.1E-09 8.8E-14 121.8 19.9 230 834-1073 49-301 (703)
213 PRK04922 tolB translocation pr 99.1 1.6E-08 3.4E-13 120.3 25.2 230 814-1056 184-432 (433)
214 PRK05137 tolB translocation pr 99.1 4.1E-08 8.9E-13 116.7 28.4 227 814-1055 182-431 (435)
215 PRK02889 tolB translocation pr 99.1 2.5E-08 5.5E-13 118.3 25.8 230 814-1056 176-424 (427)
216 PF02239 Cytochrom_D1: Cytochr 99.1 1.2E-07 2.6E-12 110.3 30.2 259 807-1073 9-346 (369)
217 KOG0290 Conserved WD40 repeat- 99.0 8.4E-09 1.8E-13 111.2 18.1 181 791-972 147-345 (364)
218 KOG1445 Tumor-specific antigen 99.0 2.4E-09 5.2E-14 124.0 14.8 151 794-945 627-799 (1012)
219 KOG1354 Serine/threonine prote 99.0 5.9E-09 1.3E-13 114.4 16.8 263 794-1072 25-357 (433)
220 KOG0771 Prolactin regulatory e 99.0 9E-09 2E-13 115.9 16.6 187 881-1072 148-352 (398)
221 KOG0322 G-protein beta subunit 99.0 1.9E-08 4.1E-13 107.4 17.1 232 792-1034 54-322 (323)
222 KOG2321 WD40 repeat protein [G 98.9 1.8E-07 3.8E-12 108.6 24.4 271 792-1071 49-340 (703)
223 PF10282 Lactonase: Lactonase, 98.9 3.3E-06 7.2E-11 97.5 35.1 263 807-1073 2-321 (345)
224 KOG0974 WD-repeat protein WDR6 98.9 3.5E-08 7.6E-13 121.1 19.4 260 793-1073 6-287 (967)
225 KOG3881 Uncharacterized conser 98.9 6.6E-08 1.4E-12 108.1 19.7 238 835-1073 54-319 (412)
226 KOG4547 WD40 repeat-containing 98.9 3.2E-08 6.9E-13 115.5 17.7 202 845-1072 2-218 (541)
227 KOG2041 WD40 repeat protein [G 98.9 6.2E-08 1.4E-12 113.8 20.0 275 792-1070 12-333 (1189)
228 TIGR03300 assembly_YfgL outer 98.9 7.9E-07 1.7E-11 103.5 29.2 254 801-1071 102-376 (377)
229 KOG1310 WD40 repeat protein [G 98.9 1.9E-08 4.1E-13 115.6 14.8 171 829-1033 43-229 (758)
230 TIGR02800 propeller_TolB tol-p 98.9 5.1E-07 1.1E-11 106.2 27.5 207 813-1066 169-386 (417)
231 PRK04922 tolB translocation pr 98.9 3.1E-07 6.8E-12 109.2 25.8 204 858-1072 184-409 (433)
232 KOG2139 WD40 repeat protein [G 98.9 4.7E-07 1E-11 100.4 23.8 238 792-1033 138-429 (445)
233 KOG2139 WD40 repeat protein [G 98.8 8.7E-08 1.9E-12 106.1 17.5 197 837-1064 99-301 (445)
234 PF10282 Lactonase: Lactonase, 98.8 8.8E-06 1.9E-10 94.0 35.1 259 795-1054 37-345 (345)
235 PRK03629 tolB translocation pr 98.8 5.3E-07 1.1E-11 107.2 24.9 212 792-1015 196-427 (429)
236 PRK00178 tolB translocation pr 98.8 1.6E-06 3.5E-11 102.8 28.5 229 815-1056 180-427 (430)
237 KOG1523 Actin-related protein 98.8 2.6E-07 5.6E-12 101.2 19.3 219 766-1016 32-260 (361)
238 COG5170 CDC55 Serine/threonine 98.8 5.1E-08 1.1E-12 105.8 12.8 265 793-1071 25-364 (460)
239 KOG2394 WD40 protein DMR-N9 [G 98.8 1.5E-07 3.3E-12 108.5 16.8 193 806-1015 187-384 (636)
240 TIGR03300 assembly_YfgL outer 98.8 4.6E-06 1E-10 97.1 29.7 260 800-1073 61-337 (377)
241 KOG1064 RAVE (regulator of V-A 98.8 3E-08 6.6E-13 125.9 11.9 206 811-1073 2187-2397(2439)
242 KOG4547 WD40 repeat-containing 98.8 5.7E-07 1.2E-11 105.3 21.4 219 805-1071 6-267 (541)
243 KOG2315 Predicted translation 98.7 2.6E-06 5.6E-11 99.3 26.1 263 796-1073 36-389 (566)
244 TIGR02658 TTQ_MADH_Hv methylam 98.7 2E-05 4.4E-10 90.7 33.4 253 814-1073 27-329 (352)
245 KOG1409 Uncharacterized conser 98.7 4.3E-07 9.4E-12 100.2 18.3 238 792-1036 22-271 (404)
246 PRK04792 tolB translocation pr 98.7 3.2E-06 6.9E-11 101.2 27.4 229 815-1056 199-446 (448)
247 PF08662 eIF2A: Eukaryotic tra 98.7 5.4E-07 1.2E-11 95.7 18.3 116 916-1043 59-186 (194)
248 KOG4497 Uncharacterized conser 98.7 7.7E-07 1.7E-11 97.6 18.7 262 800-1073 14-390 (447)
249 PF02239 Cytochrom_D1: Cytochr 98.7 6E-06 1.3E-10 96.3 27.7 245 798-1046 40-358 (369)
250 PRK02889 tolB translocation pr 98.7 4.3E-06 9.3E-11 99.4 26.9 198 858-1066 176-392 (427)
251 PRK05137 tolB translocation pr 98.7 2.4E-06 5.3E-11 101.7 24.8 209 792-1015 199-432 (435)
252 PF08662 eIF2A: Eukaryotic tra 98.7 1.1E-06 2.3E-11 93.5 18.0 108 962-1073 59-178 (194)
253 TIGR02800 propeller_TolB tol-p 98.6 3.8E-06 8.2E-11 98.8 24.5 205 792-1045 187-406 (417)
254 KOG1272 WD40-repeat-containing 98.6 2.3E-08 4.9E-13 113.5 5.0 181 884-1073 136-322 (545)
255 KOG4190 Uncharacterized conser 98.6 2E-07 4.2E-12 107.0 11.4 271 788-1070 729-1032(1034)
256 PRK01029 tolB translocation pr 98.6 1.5E-05 3.3E-10 94.8 28.1 232 814-1055 165-423 (428)
257 KOG1064 RAVE (regulator of V-A 98.6 1.4E-07 3E-12 120.2 11.0 222 793-1067 2207-2439(2439)
258 KOG0974 WD-repeat protein WDR6 98.6 2.4E-07 5.1E-12 114.0 12.6 138 806-945 147-289 (967)
259 KOG0280 Uncharacterized conser 98.6 7.1E-07 1.5E-11 96.9 14.5 194 798-992 125-332 (339)
260 KOG1409 Uncharacterized conser 98.6 1.3E-06 2.9E-11 96.5 15.8 239 825-1073 13-269 (404)
261 PRK11138 outer membrane biogen 98.5 5.2E-05 1.1E-09 89.1 28.5 256 800-1073 116-393 (394)
262 COG2706 3-carboxymuconate cycl 98.5 0.0002 4.4E-09 80.5 30.6 257 813-1072 15-319 (346)
263 TIGR02658 TTQ_MADH_Hv methylam 98.4 0.00018 3.8E-09 83.0 29.5 227 812-1044 75-339 (352)
264 PRK00178 tolB translocation pr 98.4 3.6E-05 7.7E-10 91.4 24.7 210 792-1015 196-427 (430)
265 PLN02919 haloacid dehalogenase 98.4 0.00015 3.3E-09 95.0 32.1 251 798-1073 571-887 (1057)
266 COG5354 Uncharacterized protei 98.4 4.5E-05 9.7E-10 88.3 23.2 271 794-1073 32-394 (561)
267 KOG2315 Predicted translation 98.4 1.8E-05 4E-10 92.4 20.3 228 798-1040 129-394 (566)
268 PRK04792 tolB translocation pr 98.4 3.8E-05 8.3E-10 91.9 23.5 211 793-1015 216-446 (448)
269 KOG0882 Cyclophilin-related pe 98.4 6.8E-06 1.5E-10 93.5 15.4 251 792-1044 7-314 (558)
270 COG2706 3-carboxymuconate cycl 98.3 0.00082 1.8E-08 75.7 31.1 247 792-1039 37-327 (346)
271 KOG4190 Uncharacterized conser 98.3 1.6E-06 3.4E-11 99.7 9.6 241 828-1071 727-985 (1034)
272 KOG0309 Conserved WD40 repeat- 98.3 4.1E-06 8.8E-11 99.6 13.0 270 794-1073 24-338 (1081)
273 PF13360 PQQ_2: PQQ-like domai 98.3 0.0004 8.7E-09 74.8 26.1 218 812-1042 1-237 (238)
274 PF13360 PQQ_2: PQQ-like domai 98.2 0.00044 9.6E-09 74.5 25.5 211 856-1073 1-229 (238)
275 PF04762 IKI3: IKI3 family; I 98.2 0.00032 6.9E-09 90.6 28.2 262 793-1072 74-377 (928)
276 KOG4532 WD40-like repeat conta 98.2 0.00017 3.7E-09 78.0 20.5 230 804-1036 84-332 (344)
277 KOG2041 WD40 repeat protein [G 98.2 3.6E-05 7.7E-10 91.4 16.6 232 790-1030 67-332 (1189)
278 COG4946 Uncharacterized protei 98.2 0.00056 1.2E-08 78.7 25.4 190 843-1042 273-484 (668)
279 KOG4714 Nucleoporin [Nuclear s 98.2 2.6E-05 5.7E-10 83.7 14.0 243 797-1073 39-317 (319)
280 KOG3914 WD repeat protein WDR4 98.2 1.4E-05 3.1E-10 90.3 12.4 90 983-1073 130-222 (390)
281 KOG0309 Conserved WD40 repeat- 98.2 6.1E-06 1.3E-10 98.1 9.8 202 791-994 111-340 (1081)
282 KOG2314 Translation initiation 98.1 0.00027 5.9E-09 82.6 22.2 256 798-1067 214-560 (698)
283 KOG2066 Vacuolar assembly/sort 98.1 9.2E-05 2E-09 89.7 18.0 185 794-993 39-233 (846)
284 PRK11138 outer membrane biogen 98.1 0.0011 2.5E-08 77.8 27.3 260 801-1073 66-352 (394)
285 KOG2695 WD40 repeat protein [G 98.1 8.7E-06 1.9E-10 90.2 8.4 167 886-1056 222-402 (425)
286 PF00400 WD40: WD domain, G-be 98.1 1.2E-05 2.6E-10 62.1 6.8 37 828-864 3-39 (39)
287 PRK04043 tolB translocation pr 98.1 0.0016 3.4E-08 77.5 27.9 208 814-1036 169-401 (419)
288 KOG1920 IkappaB kinase complex 98.0 0.0012 2.6E-08 83.6 26.7 229 794-1039 68-326 (1265)
289 PLN02919 haloacid dehalogenase 98.0 0.00072 1.6E-08 88.8 25.6 216 796-1039 625-892 (1057)
290 KOG3914 WD repeat protein WDR4 98.0 5.7E-05 1.2E-09 85.5 13.3 103 933-1044 129-232 (390)
291 KOG1354 Serine/threonine prote 98.0 9E-05 1.9E-09 82.3 14.3 231 794-1038 84-362 (433)
292 PRK01029 tolB translocation pr 98.0 0.00075 1.6E-08 80.5 22.9 211 858-1073 165-402 (428)
293 PF00400 WD40: WD domain, G-be 98.0 1.6E-05 3.5E-10 61.3 5.7 38 996-1033 2-39 (39)
294 KOG0280 Uncharacterized conser 98.0 0.00033 7.2E-09 76.7 17.5 161 891-1055 87-262 (339)
295 PF08450 SGL: SMP-30/Gluconola 97.9 0.0064 1.4E-07 66.6 27.6 202 841-1055 4-233 (246)
296 PF15492 Nbas_N: Neuroblastoma 97.9 0.0025 5.4E-08 70.1 23.5 222 804-1045 8-269 (282)
297 COG4946 Uncharacterized protei 97.9 0.0041 8.9E-08 71.8 25.3 113 792-908 357-478 (668)
298 KOG2114 Vacuolar assembly/sort 97.9 0.0029 6.3E-08 77.7 24.9 218 796-1046 27-255 (933)
299 PF04762 IKI3: IKI3 family; I 97.8 0.0058 1.2E-07 79.3 29.0 269 795-1073 22-332 (928)
300 KOG1832 HIV-1 Vpr-binding prot 97.8 1.7E-05 3.6E-10 95.9 4.3 201 828-1044 1093-1300(1516)
301 KOG4532 WD40-like repeat conta 97.7 0.0028 6E-08 68.8 19.9 220 814-1044 52-291 (344)
302 PF00780 CNH: CNH domain; Int 97.7 0.024 5.2E-07 63.0 28.3 228 804-1046 7-266 (275)
303 KOG1912 WD40 repeat protein [G 97.7 0.0035 7.6E-08 75.9 22.1 82 791-874 52-151 (1062)
304 PLN03200 cellulose synthase-in 97.7 0.0013 2.9E-08 88.9 20.4 304 277-601 423-767 (2102)
305 PF07433 DUF1513: Protein of u 97.7 0.013 2.8E-07 66.1 24.9 180 842-1024 56-275 (305)
306 PF08450 SGL: SMP-30/Gluconola 97.7 0.066 1.4E-06 58.6 30.0 215 799-1022 4-242 (246)
307 COG5354 Uncharacterized protei 97.6 0.0047 1E-07 72.1 21.0 225 799-1038 136-398 (561)
308 KOG4649 PQQ (pyrrolo-quinoline 97.6 0.027 5.9E-07 61.3 25.1 264 794-1073 52-350 (354)
309 PF07433 DUF1513: Protein of u 97.6 0.034 7.4E-07 62.8 27.2 219 839-1064 7-276 (305)
310 KOG2695 WD40 repeat protein [G 97.6 0.00013 2.7E-09 81.3 6.8 144 800-949 217-381 (425)
311 KOG1275 PAB-dependent poly(A) 97.6 0.0016 3.4E-08 80.2 16.4 190 804-1033 147-340 (1118)
312 KOG1645 RING-finger-containing 97.6 0.0031 6.7E-08 71.8 17.5 239 789-1035 188-461 (463)
313 KOG2066 Vacuolar assembly/sort 97.5 0.0026 5.6E-08 77.7 17.9 137 804-945 83-234 (846)
314 cd00216 PQQ_DH Dehydrogenases 97.5 0.039 8.4E-07 67.1 27.6 238 801-1051 106-440 (488)
315 KOG4714 Nucleoporin [Nuclear s 97.4 0.00059 1.3E-08 73.7 9.7 147 883-1036 95-255 (319)
316 KOG3621 WD40 repeat-containing 97.4 0.014 3E-07 70.8 21.8 267 796-1073 37-352 (726)
317 KOG1912 WD40 repeat protein [G 97.4 0.0098 2.1E-07 72.3 20.4 233 793-1072 14-302 (1062)
318 PLN03200 cellulose synthase-in 97.4 0.012 2.6E-07 80.1 23.4 244 244-507 4-262 (2102)
319 PRK04043 tolB translocation pr 97.4 0.033 7.1E-07 66.4 25.0 188 796-995 189-402 (419)
320 COG5170 CDC55 Serine/threonine 97.4 0.0021 4.6E-08 70.7 13.2 232 836-1073 26-308 (460)
321 cd00216 PQQ_DH Dehydrogenases 97.4 0.062 1.3E-06 65.4 27.2 264 802-1073 59-423 (488)
322 KOG1645 RING-finger-containing 97.4 0.01 2.3E-07 67.7 18.7 247 816-1072 175-459 (463)
323 KOG1920 IkappaB kinase complex 97.2 0.023 5E-07 72.4 21.2 230 836-1072 68-320 (1265)
324 KOG3617 WD40 and TPR repeat-co 97.2 0.014 3E-07 71.4 18.1 106 756-866 19-131 (1416)
325 PF15492 Nbas_N: Neuroblastoma 97.2 0.053 1.2E-06 59.9 20.9 217 842-1073 3-258 (282)
326 KOG4649 PQQ (pyrrolo-quinoline 97.1 0.16 3.4E-06 55.6 23.7 138 805-946 24-167 (354)
327 KOG0882 Cyclophilin-related pe 97.1 0.0024 5.3E-08 73.4 10.1 205 834-1044 7-240 (558)
328 KOG2314 Translation initiation 97.1 0.092 2E-06 62.2 22.8 229 816-1055 192-454 (698)
329 PF11768 DUF3312: Protein of u 97.0 0.1 2.2E-06 62.7 23.5 72 962-1036 259-330 (545)
330 KOG2114 Vacuolar assembly/sort 97.0 0.032 6.9E-07 69.0 19.7 190 881-1072 27-241 (933)
331 PF04053 Coatomer_WDAD: Coatom 97.0 0.075 1.6E-06 63.7 22.3 222 831-1073 27-261 (443)
332 PF08596 Lgl_C: Lethal giant l 97.0 0.31 6.6E-06 57.7 26.9 246 796-1063 3-325 (395)
333 KOG1832 HIV-1 Vpr-binding prot 97.0 0.00067 1.5E-08 82.6 4.5 239 792-1054 1099-1367(1516)
334 PF06433 Me-amine-dh_H: Methyl 97.0 0.33 7.2E-06 55.7 25.6 251 814-1073 17-319 (342)
335 PF04841 Vps16_N: Vps16, N-ter 96.9 0.36 7.8E-06 57.5 27.2 53 1005-1057 216-270 (410)
336 PF03178 CPSF_A: CPSF A subuni 96.9 0.28 6.1E-06 56.1 25.3 210 814-1072 2-263 (321)
337 PF08553 VID27: VID27 cytoplas 96.9 0.038 8.2E-07 69.7 19.2 132 853-992 499-646 (794)
338 KOG1275 PAB-dependent poly(A) 96.8 0.0075 1.6E-07 74.5 12.1 145 795-943 178-341 (1118)
339 PF11768 DUF3312: Protein of u 96.8 0.0061 1.3E-07 72.8 10.4 75 792-870 257-333 (545)
340 PRK02888 nitrous-oxide reducta 96.6 0.27 5.8E-06 60.5 22.8 202 845-1063 201-450 (635)
341 smart00320 WD40 WD40 repeats. 96.6 0.0059 1.3E-07 43.9 5.6 37 828-864 4-40 (40)
342 PF06433 Me-amine-dh_H: Methyl 96.4 0.84 1.8E-05 52.5 24.1 229 813-1046 66-331 (342)
343 KOG1008 Uncharacterized conser 96.3 0.0021 4.5E-08 76.7 2.7 196 794-993 56-275 (783)
344 PF04053 Coatomer_WDAD: Coatom 96.3 0.3 6.6E-06 58.6 20.8 168 883-1070 38-219 (443)
345 smart00320 WD40 WD40 repeats. 96.3 0.0081 1.7E-07 43.2 4.9 37 997-1033 4-40 (40)
346 PF00780 CNH: CNH domain; Int 96.2 1.3 2.8E-05 49.1 24.2 214 846-1073 5-254 (275)
347 KOG3617 WD40 and TPR repeat-co 96.2 0.065 1.4E-06 65.9 13.9 97 806-907 29-131 (1416)
348 PHA02713 hypothetical protein; 96.2 0.24 5.1E-06 61.4 19.6 210 859-1073 273-532 (557)
349 COG3386 Gluconolactonase [Carb 96.1 1 2.3E-05 51.5 22.9 203 843-1056 31-264 (307)
350 PRK02888 nitrous-oxide reducta 96.1 0.27 5.9E-06 60.4 18.8 90 984-1073 295-403 (635)
351 PHA02713 hypothetical protein; 96.1 0.33 7.2E-06 60.1 20.1 222 814-1046 272-544 (557)
352 KOG4441 Proteins containing BT 95.9 0.44 9.5E-06 59.2 20.3 224 806-1039 287-550 (571)
353 PF14783 BBS2_Mid: Ciliary BBS 95.9 0.3 6.4E-06 47.3 14.6 97 839-939 2-109 (111)
354 KOG4441 Proteins containing BT 95.9 0.52 1.1E-05 58.5 20.6 211 858-1073 301-545 (571)
355 PF06977 SdiA-regulated: SdiA- 95.8 4.1 8.9E-05 45.3 25.5 200 830-1032 15-247 (248)
356 PF04841 Vps16_N: Vps16, N-ter 95.7 6.2 0.00013 47.1 28.3 187 815-1019 62-273 (410)
357 KOG4640 Anaphase-promoting com 95.6 0.056 1.2E-06 65.0 10.3 93 962-1056 20-115 (665)
358 PF03178 CPSF_A: CPSF A subuni 95.5 0.92 2E-05 51.9 19.7 128 814-945 62-203 (321)
359 COG3490 Uncharacterized protei 95.5 0.8 1.7E-05 51.0 17.5 207 817-1033 94-346 (366)
360 PRK13616 lipoprotein LpqB; Pro 95.4 1.6 3.4E-05 54.5 22.1 198 834-1070 347-564 (591)
361 PF14783 BBS2_Mid: Ciliary BBS 95.3 0.52 1.1E-05 45.7 13.8 95 797-901 2-108 (111)
362 TIGR03075 PQQ_enz_alc_DH PQQ-d 95.3 4.8 0.0001 49.6 25.9 71 800-873 116-196 (527)
363 PF00930 DPPIV_N: Dipeptidyl p 95.2 1.5 3.3E-05 50.9 20.4 237 814-1064 23-301 (353)
364 PF08596 Lgl_C: Lethal giant l 95.1 0.78 1.7E-05 54.4 17.7 202 793-1024 85-325 (395)
365 KOG2395 Protein involved in va 95.0 0.43 9.3E-06 56.7 14.5 138 847-992 344-499 (644)
366 COG3391 Uncharacterized conser 94.9 8.2 0.00018 45.5 25.6 206 838-1046 75-294 (381)
367 COG0823 TolB Periplasmic compo 94.8 2.3 5E-05 51.0 20.7 186 832-1025 188-389 (425)
368 KOG4640 Anaphase-promoting com 94.8 0.13 2.7E-06 62.2 9.9 75 795-872 21-98 (665)
369 KOG2444 WD40 repeat protein [G 94.8 0.045 9.8E-07 58.9 5.5 140 891-1036 32-178 (238)
370 KOG2079 Vacuolar assembly/sort 94.7 0.35 7.7E-06 61.5 13.6 109 794-906 89-202 (1206)
371 KOG3621 WD40 repeat-containing 94.6 0.23 5E-06 60.6 11.6 141 835-977 32-185 (726)
372 PF05804 KAP: Kinesin-associat 94.4 0.77 1.7E-05 58.0 16.0 335 312-689 260-608 (708)
373 KOG1897 Damage-specific DNA bi 94.1 25 0.00054 45.4 28.2 274 792-1072 528-854 (1096)
374 COG3490 Uncharacterized protei 94.1 10 0.00023 42.5 21.7 259 794-1070 34-344 (366)
375 PF05096 Glu_cyclase_2: Glutam 94.0 11 0.00024 42.1 22.2 183 839-1024 47-249 (264)
376 PHA03098 kelch-like protein; P 94.0 2.3 5E-05 52.2 19.1 188 847-1039 294-515 (534)
377 COG0823 TolB Periplasmic compo 94.0 1.2 2.6E-05 53.3 15.9 131 814-947 218-361 (425)
378 PF08553 VID27: VID27 cytoplas 94.0 0.56 1.2E-05 59.6 13.7 104 927-1034 543-646 (794)
379 KOG1008 Uncharacterized conser 93.9 0.017 3.6E-07 69.3 0.0 154 791-945 99-276 (783)
380 COG5276 Uncharacterized conser 93.6 16 0.00034 41.3 28.4 152 794-947 86-244 (370)
381 KOG2444 WD40 repeat protein [G 93.5 0.085 1.8E-06 56.8 4.6 100 851-951 33-139 (238)
382 KOG2395 Protein involved in va 93.4 0.87 1.9E-05 54.3 12.7 136 806-944 348-500 (644)
383 PF02897 Peptidase_S9_N: Proly 93.3 21 0.00046 42.1 27.7 235 799-1039 128-408 (414)
384 PHA03098 kelch-like protein; P 93.3 4.5 9.8E-05 49.7 19.9 186 804-996 295-514 (534)
385 KOG2079 Vacuolar assembly/sort 92.9 0.3 6.6E-06 62.1 8.7 98 973-1073 98-202 (1206)
386 COG3391 Uncharacterized conser 92.9 25 0.00053 41.6 25.7 210 799-1016 78-309 (381)
387 KOG2160 Armadillo/beta-catenin 92.9 1.6 3.5E-05 50.1 13.7 187 405-604 100-288 (342)
388 TIGR03075 PQQ_enz_alc_DH PQQ-d 92.8 10 0.00022 46.8 21.7 193 848-1040 69-338 (527)
389 PF05804 KAP: Kinesin-associat 92.3 1.1 2.5E-05 56.5 12.6 301 421-736 276-609 (708)
390 COG3386 Gluconolactonase [Carb 91.7 21 0.00045 41.1 21.0 211 806-1024 39-274 (307)
391 PRK13800 putative oxidoreducta 91.7 6 0.00013 52.0 18.9 249 301-594 622-895 (897)
392 PF14583 Pectate_lyase22: Olig 91.5 35 0.00075 40.3 25.2 215 843-1065 42-303 (386)
393 KOG4499 Ca2+-binding protein R 91.4 23 0.0005 38.9 19.3 204 805-1014 28-262 (310)
394 PHA02790 Kelch-like protein; P 90.8 10 0.00022 46.2 18.5 181 848-1038 272-473 (480)
395 PF01602 Adaptin_N: Adaptin N 90.4 3.5 7.6E-05 50.2 14.2 177 301-508 115-298 (526)
396 COG3292 Predicted periplasmic 90.0 10 0.00023 46.1 16.7 263 794-1070 164-443 (671)
397 TIGR03074 PQQ_membr_DH membran 89.9 45 0.00097 43.1 23.6 197 848-1044 194-486 (764)
398 KOG4499 Ca2+-binding protein R 89.8 36 0.00077 37.5 20.1 92 966-1057 161-264 (310)
399 PF12894 Apc4_WD40: Anaphase-p 89.6 0.97 2.1E-05 37.1 5.7 33 836-869 11-43 (47)
400 cd00020 ARM Armadillo/beta-cat 89.6 1.9 4.1E-05 40.7 8.8 118 373-505 2-119 (120)
401 KOG2280 Vacuolar assembly/sort 89.3 23 0.00049 44.6 19.2 179 858-1044 64-255 (829)
402 PF12894 Apc4_WD40: Anaphase-p 89.2 0.98 2.1E-05 37.1 5.4 35 1005-1040 11-45 (47)
403 PF12234 Rav1p_C: RAVE protein 88.9 12 0.00027 46.7 17.0 71 837-907 30-104 (631)
404 PHA02790 Kelch-like protein; P 88.5 20 0.00043 43.7 18.6 143 923-1073 315-469 (480)
405 PF12234 Rav1p_C: RAVE protein 87.2 11 0.00023 47.2 15.1 106 965-1072 32-154 (631)
406 PF00930 DPPIV_N: Dipeptidyl p 87.1 52 0.0011 38.3 20.2 212 845-1071 1-263 (353)
407 PF10508 Proteasom_PSMB: Prote 86.8 16 0.00034 44.9 16.4 206 376-608 117-327 (503)
408 PF05096 Glu_cyclase_2: Glutam 86.4 62 0.0013 36.4 21.7 185 792-980 42-248 (264)
409 PF02897 Peptidase_S9_N: Proly 86.2 78 0.0017 37.4 30.2 210 838-1054 125-378 (414)
410 KOG1897 Damage-specific DNA bi 85.9 1.3E+02 0.0027 39.4 25.9 257 804-1070 595-894 (1096)
411 PF14761 HPS3_N: Hermansky-Pud 85.7 49 0.0011 36.0 17.2 56 799-855 22-78 (215)
412 cd00020 ARM Armadillo/beta-cat 84.1 7.6 0.00016 36.5 9.6 77 432-508 4-80 (120)
413 COG3823 Glutamine cyclotransfe 83.9 27 0.00059 37.8 14.0 169 847-1023 55-247 (262)
414 COG3204 Uncharacterized protei 83.8 86 0.0019 35.7 20.4 164 832-995 81-265 (316)
415 PF14727 PHTB1_N: PTHB1 N-term 82.1 1.2E+02 0.0027 36.4 28.4 138 805-943 38-203 (418)
416 COG5276 Uncharacterized conser 81.3 1.1E+02 0.0023 35.1 24.7 149 795-945 129-286 (370)
417 PRK14131 N-acetylneuraminic ac 81.1 1.2E+02 0.0026 35.6 21.6 125 937-1065 190-353 (376)
418 PRK09687 putative lyase; Provi 80.3 41 0.00088 38.1 15.0 69 523-597 51-119 (280)
419 PF01602 Adaptin_N: Adaptin N 79.4 79 0.0017 38.5 18.4 215 248-506 108-333 (526)
420 KOG1062 Vesicle coat complex A 79.0 1.9E+02 0.0041 37.2 20.7 322 245-603 133-549 (866)
421 PF06977 SdiA-regulated: SdiA- 78.2 1.2E+02 0.0026 33.9 23.6 191 879-1071 21-247 (248)
422 PF10647 Gmad1: Lipoprotein Lp 78.2 1.2E+02 0.0026 33.8 19.6 141 884-1027 30-187 (253)
423 KOG1916 Nuclear protein, conta 78.2 2.4 5.2E-05 53.4 4.5 100 972-1073 193-322 (1283)
424 TIGR03548 mutarot_permut cycli 77.7 1.1E+02 0.0025 34.8 18.0 105 802-907 71-194 (323)
425 KOG0166 Karyopherin (importin) 77.5 29 0.00063 42.4 13.2 250 235-542 218-472 (514)
426 PF14870 PSII_BNR: Photosynthe 76.9 1.5E+02 0.0032 34.2 28.3 228 796-1032 63-301 (302)
427 KOG2171 Karyopherin (importin) 76.8 79 0.0017 41.8 17.4 303 236-596 100-459 (1075)
428 PF07569 Hira: TUP1-like enhan 76.6 23 0.00049 38.7 11.2 74 795-869 13-98 (219)
429 COG1520 FOG: WD40-like repeat 75.9 1.6E+02 0.0036 34.2 29.4 144 803-950 67-223 (370)
430 KOG1983 Tomosyn and related SN 75.4 39 0.00085 45.0 14.8 214 798-1039 39-268 (993)
431 KOG1900 Nuclear pore complex, 75.2 16 0.00035 48.4 10.8 169 840-1036 82-273 (1311)
432 cd00256 VATPase_H VATPase_H, r 75.0 29 0.00064 41.6 12.3 244 297-596 140-423 (429)
433 PRK13684 Ycf48-like protein; P 74.4 1.7E+02 0.0038 33.8 30.8 147 917-1073 173-330 (334)
434 PLN00033 photosystem II stabil 74.0 2E+02 0.0044 34.4 26.1 139 887-1032 248-396 (398)
435 PLN02153 epithiospecifier prot 73.1 1.8E+02 0.004 33.5 22.8 146 804-951 33-232 (341)
436 PF14583 Pectate_lyase22: Olig 72.8 2.1E+02 0.0045 34.0 28.4 255 806-1071 50-378 (386)
437 KOG2063 Vacuolar assembly/sort 72.6 73 0.0016 41.6 15.6 70 799-869 21-99 (877)
438 KOG4224 Armadillo repeat prote 72.6 21 0.00045 41.4 9.6 243 290-602 119-367 (550)
439 PF15390 DUF4613: Domain of un 72.1 1.6E+02 0.0034 36.7 17.2 142 795-945 20-187 (671)
440 KOG3036 Protein involved in ce 72.1 8.4 0.00018 42.4 6.2 137 299-478 122-287 (293)
441 TIGR03118 PEPCTERM_chp_1 conse 72.0 1.9E+02 0.0042 33.3 24.5 70 985-1055 222-306 (336)
442 PF10508 Proteasom_PSMB: Prote 71.8 1E+02 0.0022 38.0 16.4 133 361-509 60-192 (503)
443 PRK13684 Ycf48-like protein; P 71.3 2E+02 0.0044 33.3 24.6 105 962-1069 172-283 (334)
444 PRK13616 lipoprotein LpqB; Pro 71.3 2.8E+02 0.0062 34.9 21.4 57 795-856 350-416 (591)
445 PF14781 BBS2_N: Ciliary BBSom 70.9 68 0.0015 32.5 11.8 104 841-945 3-126 (136)
446 PRK09687 putative lyase; Provi 70.8 1.2E+02 0.0026 34.4 15.5 29 567-596 158-186 (280)
447 PF13646 HEAT_2: HEAT repeats; 70.5 26 0.00056 31.4 8.4 85 480-593 2-87 (88)
448 TIGR03074 PQQ_membr_DH membran 70.4 2.5E+02 0.0055 36.5 19.9 70 804-876 260-354 (764)
449 TIGR03548 mutarot_permut cycli 69.9 2E+02 0.0044 32.7 22.0 104 847-950 72-200 (323)
450 PF04826 Arm_2: Armadillo-like 69.8 1.4E+02 0.0031 33.4 15.5 185 298-502 10-201 (254)
451 PF07569 Hira: TUP1-like enhan 69.6 36 0.00078 37.1 10.6 37 961-999 65-101 (219)
452 PF14870 PSII_BNR: Photosynthe 69.2 2.2E+02 0.0047 32.8 27.7 223 835-1070 15-257 (302)
453 PF10647 Gmad1: Lipoprotein Lp 69.2 1.9E+02 0.0041 32.1 21.2 156 838-995 25-199 (253)
454 smart00036 CNH Domain found in 68.2 2.2E+02 0.0048 32.5 29.5 230 805-1045 14-280 (302)
455 PF15390 DUF4613: Domain of un 68.0 1.6E+02 0.0035 36.6 16.1 142 792-933 54-220 (671)
456 PF10313 DUF2415: Uncharacteri 67.0 15 0.00033 29.7 5.1 32 837-868 1-35 (43)
457 KOG2280 Vacuolar assembly/sort 66.6 1.4E+02 0.003 38.1 15.5 80 899-981 64-146 (829)
458 PF11715 Nup160: Nucleoporin N 66.6 33 0.00072 42.4 10.9 71 803-873 157-255 (547)
459 PF02333 Phytase: Phytase; In 65.1 3E+02 0.0064 32.8 22.4 184 887-1072 66-288 (381)
460 PF08801 Nucleoporin_N: Nup133 64.0 2.1E+02 0.0047 34.0 16.8 32 1006-1037 190-221 (422)
461 PF08728 CRT10: CRT10; InterP 63.9 1.6E+02 0.0035 37.6 15.9 115 917-1034 101-245 (717)
462 PF05536 Neurochondrin: Neuroc 63.4 1.8E+02 0.0039 36.3 16.2 271 295-599 135-453 (543)
463 PLN02193 nitrile-specifier pro 63.2 3.5E+02 0.0075 32.9 19.9 191 847-1039 175-414 (470)
464 KOG1916 Nuclear protein, conta 63.1 9.2 0.0002 48.6 4.9 60 804-866 195-265 (1283)
465 PF13646 HEAT_2: HEAT repeats; 62.1 42 0.00091 30.0 8.1 68 530-616 3-71 (88)
466 TIGR03032 conserved hypothetic 62.0 3E+02 0.0066 31.9 19.3 49 1016-1064 212-260 (335)
467 PF05004 IFRD: Interferon-rela 62.0 65 0.0014 37.1 11.3 150 434-596 85-255 (309)
468 TIGR02276 beta_rpt_yvtn 40-res 61.8 32 0.00069 26.4 6.3 40 1015-1054 1-41 (42)
469 KOG3630 Nuclear pore complex, 61.8 36 0.00077 44.7 9.6 124 932-1057 120-254 (1405)
470 COG4590 ABC-type uncharacteriz 61.6 41 0.00088 40.1 9.4 154 885-1043 228-394 (733)
471 PF08728 CRT10: CRT10; InterP 59.9 1.7E+02 0.0037 37.5 15.0 139 804-943 49-245 (717)
472 COG1520 FOG: WD40-like repeat 59.1 3.4E+02 0.0075 31.6 23.6 191 850-1046 70-279 (370)
473 KOG4224 Armadillo repeat prote 58.2 1.3E+02 0.0027 35.3 12.2 135 309-460 216-359 (550)
474 PF04564 U-box: U-box domain; 58.0 1.3 2.8E-05 39.6 -2.6 57 315-372 11-69 (73)
475 KOG1896 mRNA cleavage and poly 57.4 3E+02 0.0065 37.0 16.6 137 806-945 1048-1214(1366)
476 PF10395 Utp8: Utp8 family; I 57.3 5.2E+02 0.011 33.0 22.0 161 836-1001 129-313 (670)
477 PF10168 Nup88: Nuclear pore c 57.0 5.5E+02 0.012 33.2 22.9 70 837-907 85-179 (717)
478 PLN02153 epithiospecifier prot 56.8 3.6E+02 0.0077 31.0 22.1 138 926-1064 85-260 (341)
479 PF10313 DUF2415: Uncharacteri 56.4 35 0.00075 27.7 5.5 31 1006-1036 1-34 (43)
480 PRK14131 N-acetylneuraminic ac 56.1 3.9E+02 0.0085 31.3 22.8 62 809-872 45-120 (376)
481 TIGR02604 Piru_Ver_Nterm putat 56.1 2.5E+02 0.0054 32.9 15.2 58 963-1024 72-142 (367)
482 PF10433 MMS1_N: Mono-function 55.5 4.7E+02 0.01 32.0 18.4 223 845-1073 219-475 (504)
483 COG5167 VID27 Protein involved 55.4 1.8E+02 0.0038 35.6 13.2 138 846-992 477-631 (776)
484 KOG1048 Neural adherens juncti 54.1 83 0.0018 40.0 10.9 156 293-460 511-679 (717)
485 PRK13800 putative oxidoreducta 53.7 2.8E+02 0.0061 36.7 16.6 207 436-677 622-856 (897)
486 PF07995 GSDH: Glucose / Sorbo 53.1 1.5E+02 0.0032 34.4 12.4 110 917-1027 2-135 (331)
487 PF08569 Mo25: Mo25-like; Int 52.9 2.7E+02 0.0059 32.5 14.4 192 246-516 10-203 (335)
488 TIGR03547 muta_rot_YjhT mutatr 50.1 4.5E+02 0.0097 30.2 22.4 26 847-872 63-99 (346)
489 KOG3522 Predicted guanine nucl 50.0 29 0.00063 44.1 6.2 141 891-1037 549-699 (925)
490 TIGR03118 PEPCTERM_chp_1 conse 49.6 4.7E+02 0.01 30.3 20.1 51 1022-1073 217-278 (336)
491 PF14655 RAB3GAP2_N: Rab3 GTPa 49.2 60 0.0013 38.9 8.5 74 1000-1073 302-397 (415)
492 PF10433 MMS1_N: Mono-function 49.2 5.8E+02 0.013 31.2 25.3 243 804-1055 222-502 (504)
493 KOG2171 Karyopherin (importin) 48.7 8.3E+02 0.018 32.9 23.5 73 659-734 389-461 (1075)
494 PF05694 SBP56: 56kDa selenium 47.6 2.3E+02 0.005 34.2 12.7 121 814-934 222-393 (461)
495 PF12768 Rax2: Cortical protei 47.2 1.3E+02 0.0029 34.1 10.5 69 985-1054 16-96 (281)
496 PF03224 V-ATPase_H_N: V-ATPas 47.2 1.8E+02 0.0039 33.2 11.9 131 302-444 57-200 (312)
497 TIGR03547 muta_rot_YjhT mutatr 46.6 5E+02 0.011 29.8 22.8 127 936-1066 168-332 (346)
498 KOG0946 ER-Golgi vesicle-tethe 46.6 1.1E+02 0.0023 39.3 10.0 135 378-527 61-225 (970)
499 KOG1983 Tomosyn and related SN 46.5 3.2E+02 0.0069 36.7 15.2 220 837-1073 36-263 (993)
500 PF14655 RAB3GAP2_N: Rab3 GTPa 45.7 1.4E+02 0.0029 36.0 10.7 84 962-1046 307-409 (415)
No 1
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.7e-36 Score=329.42 Aligned_cols=273 Identities=16% Similarity=0.264 Sum_probs=242.4
Q ss_pred CCCCcEEEEEEe--CCEEEEEECCCcEEEEECCCCCeeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEccCCc
Q 001455 792 KCSGAVTALIYY--KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRK 869 (1074)
Q Consensus 792 gH~~~VtsLafS--~~~LaSGs~DGtVrIWDl~t~~~~~i~tl~gH~~~VtsLafSpdg~~LaSGS~DGtIrIWDl~tg~ 869 (1074)
||.++|.|++|+ +..++||+.|.++|+||..+.. +.++.++|...|.|++|+|||+.|+||+.||+|++||..+|+
T Consensus 113 GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeT--p~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~ 190 (480)
T KOG0271|consen 113 GHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTET--PLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQ 190 (480)
T ss_pred CCCCcEEEEEecCCCceEEecCCCceEEeeccCCCC--cceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCC
Confidence 999999999999 5589999999999999999874 489999999999999999999999999999999999999999
Q ss_pred eEEEEEeccCCCeEEEc-------cCCCeEEEEecCCeEEEEeCCC--ceeeeec-CCCeEEEEEe-CCEEEEEECCCcE
Q 001455 870 LELIEVIATKEPIRKLD-------TYGKTIFASTQGHRMKVIDSSR--TLKDIYR-SKGIKSMSVV-QGKIYIGCMDSSI 938 (1074)
Q Consensus 870 ~~~~~~~~h~~~V~s~s-------~dg~~L~sgS~DgtI~VWDl~~--~l~~l~~-~~~V~sLa~s-dgkLlaGs~DgsI 938 (1074)
..-..+.+|+..|++++ +..+++++++.||.|+|||+.. +...+.+ ...|+|+.|- +|.+++|+.|++|
T Consensus 191 ~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~gliySgS~DrtI 270 (480)
T KOG0271|consen 191 QIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEGLIYSGSQDRTI 270 (480)
T ss_pred cccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCceEEecCCCceE
Confidence 88888889999999864 4567999999999999999884 5555554 4579999998 8899999999999
Q ss_pred EEEEccCCceeeeccccccccCCCCCeEEEEEcCC-----------ce-------------------------EEEEEec
Q 001455 939 QELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKD-----------WL-------------------------YSASSSV 982 (1074)
Q Consensus 939 ~IwDl~tg~~~~i~~~~r~~~~h~~~I~sL~~spd-----------~i-------------------------~las~S~ 982 (1074)
++|+...|... +.+.+|...|+.++.+.+ +. .+++++
T Consensus 271 kvw~a~dG~~~------r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgs- 343 (480)
T KOG0271|consen 271 KVWRALDGKLC------RELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGS- 343 (480)
T ss_pred EEEEccchhHH------HhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEec-
Confidence 99999987654 445788889988887722 22 367666
Q ss_pred CCCeEEEEEC-CCCCeEEEccCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCcEEEEEeCC-CCeEEEEEcC--CE
Q 001455 983 EGSNIKEWRR-HRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAG-SKITSLLTAN--DI 1058 (1074)
Q Consensus 983 dDgtI~IWDl-~t~~~i~~l~gH~~~VtsLafSPDG~~LaSGS~DGtIrIWDl~tg~~l~tL~~h-s~VtsLa~dg--~~ 1058 (1074)
+|.++.+|+. .+.+++..+.+|..-|+.+.||||++|||++|.|..|++|+.++|+.+.+|.+| ..|..++|+. +.
T Consensus 344 Dd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRL 423 (480)
T KOG0271|consen 344 DDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRL 423 (480)
T ss_pred CCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccE
Confidence 9999999995 455678889999999999999999999999999999999999999999999999 6799999974 49
Q ss_pred EEEEECCCcEEEEec
Q 001455 1059 VLCGTETGLIKGWIP 1073 (1074)
Q Consensus 1059 LaSGs~DG~IrIWdi 1073 (1074)
|++|+.|.++++|++
T Consensus 424 lVS~SkDsTLKvw~V 438 (480)
T KOG0271|consen 424 LVSGSKDSTLKVWDV 438 (480)
T ss_pred EEEcCCCceEEEEEe
Confidence 999999999999986
No 2
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2.1e-33 Score=309.40 Aligned_cols=272 Identities=17% Similarity=0.230 Sum_probs=239.7
Q ss_pred CCCCcEEEEEEe--CCEEEEEECCCcEEEEECCCCCeeEEEEeccCCCCEEEEEEcCC--CCEEEEEeCCCeEEEEEccC
Q 001455 792 KCSGAVTALIYY--KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEP--GESLLSGSADKTIGVWQMVQ 867 (1074)
Q Consensus 792 gH~~~VtsLafS--~~~LaSGs~DGtVrIWDl~t~~~~~i~tl~gH~~~VtsLafSpd--g~~LaSGS~DGtIrIWDl~t 867 (1074)
|-+++|..+.|+ +..|+|||.+|.++||+..+. ..+.+|.||.+.|.++.|+|. +..++||+.||++++|++.+
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~--~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~ 250 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQC--NLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQ 250 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecCCc--ceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCC
Confidence 558999999999 568999999999999999877 458999999999999999998 45699999999999999987
Q ss_pred CceEEEEEeccCCCeE--EEccCCCeEEEEecCCeEEEEeCCCceee---eecCCCeEEEEEe-CCEEEE-EECCCcEEE
Q 001455 868 RKLELIEVIATKEPIR--KLDTYGKTIFASTQGHRMKVIDSSRTLKD---IYRSKGIKSMSVV-QGKIYI-GCMDSSIQE 940 (1074)
Q Consensus 868 g~~~~~~~~~h~~~V~--s~s~dg~~L~sgS~DgtI~VWDl~~~l~~---l~~~~~V~sLa~s-dgkLla-Gs~DgsI~I 940 (1074)
... .....+|...|. .|.|+|+++.+++.|.+-++||+...... --+..+|.+++|. ||.+++ |+.|..-++
T Consensus 251 e~~-l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~Rv 329 (459)
T KOG0272|consen 251 ETP-LQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRV 329 (459)
T ss_pred Ccc-hhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhhe
Confidence 543 335567777776 47899999999999999999999843222 2235679999996 888665 999999999
Q ss_pred EEccCCceeeeccccccccCCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEccCCCCCeEEEEEec-CCCE
Q 001455 941 LAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVE-DFIY 1019 (1074)
Q Consensus 941 wDl~tg~~~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S~dDgtI~IWDl~t~~~i~~l~gH~~~VtsLafSP-DG~~ 1019 (1074)
||+++|..+.+ +.+|..+|.++.|+|+|..+++++ .|++++|||++....+.++.+|..-|+.+.|+| .|.+
T Consensus 330 WDlRtgr~im~------L~gH~k~I~~V~fsPNGy~lATgs-~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~f 402 (459)
T KOG0272|consen 330 WDLRTGRCIMF------LAGHIKEILSVAFSPNGYHLATGS-SDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYF 402 (459)
T ss_pred eecccCcEEEE------ecccccceeeEeECCCceEEeecC-CCCcEEEeeecccccceecccccchhhheEecccCCeE
Confidence 99999988765 378999999999999999999888 889999999999998999999999999999998 8899
Q ss_pred EEEEECCCcEEEEECCCCcEEEEEeCC-CCeEEEE--EcCCEEEEEECCCcEEEEec
Q 001455 1020 LNYNSSASSLQIWLRGTQQKVGRISAG-SKITSLL--TANDIVLCGTETGLIKGWIP 1073 (1074)
Q Consensus 1020 LaSGS~DGtIrIWDl~tg~~l~tL~~h-s~VtsLa--~dg~~LaSGs~DG~IrIWdi 1073 (1074)
|+|+|.|++++||...++.+++++.|| ++|.++. ++++++++++.|.+|++|.+
T Consensus 403 L~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~~ 459 (459)
T KOG0272|consen 403 LVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWRP 459 (459)
T ss_pred EEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeeccC
Confidence 999999999999999999999999999 6688865 56889999999999999975
No 3
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5.9e-33 Score=304.10 Aligned_cols=343 Identities=17% Similarity=0.233 Sum_probs=267.0
Q ss_pred hHHHHHHHhHHhhcCCCchhhhhHhhhhccc--ccccCcCceeeecccccchhhccccccccccccccccccccccCCCc
Q 001455 700 SACQILLDGVEQFLHPGLELEERLLACLCIY--NYASGKGMQKLIRSSEGVRESLRRLSNVTWMAEELHKAADYYLPNIS 777 (1074)
Q Consensus 700 ~Ar~~LL~eL~~~L~~s~~LeERvLasLSL~--nfs~d~gl~~L~~~se~vv~sLrklk~~~w~a~~~~k~~~~~~p~~~ 777 (1074)
..|..|+.++.+.++|...+|+|+|.++--. .+..+.|+- +. ++ ..++.. ..+..+...+|.
T Consensus 151 n~R~~ll~elskyi~p~illP~rRLehLl~qAv~~Q~d~cvy---hn------sl---dsvsll--~Dh~c~~~qip~-- 214 (519)
T KOG0293|consen 151 NERDKLLDELSKYIPPNILLPKRRLEHLLEQAVKYQRDSCVY---HN------SL---DSVSLL--SDHFCGRLQIPS-- 214 (519)
T ss_pred hhHHHHHHHHHhhCCHhhcCChHHHHHHHHHHHHHHHhHhHH---hc------cc---chhhhh--hhcccCcccCCc--
Confidence 4688899999999999999999999876211 111111110 00 10 001101 123333333442
Q ss_pred ccceeeEEEEeecCCCCCcEEEEEEe--CCEEEEEECCCcEEEEECCC-CCeeEEEEeccCCCCEEEEEEcCCCCEEEEE
Q 001455 778 RISCVHTQILEASHKCSGAVTALIYY--KGLLCSGFSDGSIKMWDIKK-QSAMLVWDVKEHRKAVTSFSLFEPGESLLSG 854 (1074)
Q Consensus 778 ~~~~~~tl~le~~~gH~~~VtsLafS--~~~LaSGs~DGtVrIWDl~t-~~~~~i~tl~gH~~~VtsLafSpdg~~LaSG 854 (1074)
...++.+.|+++|+-+.|+ |.+||||+.|.+..||++.. ......+++.+|..+|..+.||||.++|++|
T Consensus 215 -------qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaC 287 (519)
T KOG0293|consen 215 -------QTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLAC 287 (519)
T ss_pred -------hhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEec
Confidence 2233445899999999999 55899999999999998764 3345678899999999999999999999999
Q ss_pred eCCCeEEEEEccCCceEEEEEeccCCCeE--EEccCCCeEEEEecCCeEEEEeCCCceeeeec---CCCeEEEEEe-CCE
Q 001455 855 SADKTIGVWQMVQRKLELIEVIATKEPIR--KLDTYGKTIFASTQGHRMKVIDSSRTLKDIYR---SKGIKSMSVV-QGK 928 (1074)
Q Consensus 855 S~DGtIrIWDl~tg~~~~~~~~~h~~~V~--s~s~dg~~L~sgS~DgtI~VWDl~~~l~~l~~---~~~V~sLa~s-dgk 928 (1074)
+.|..+++||+.+|........++...+. ++.|+|..+++|+.|+++..||+++....-+. ...|.+++++ ||+
T Consensus 288 g~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk 367 (519)
T KOG0293|consen 288 GFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGK 367 (519)
T ss_pred CchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCCCc
Confidence 99999999999999876655555444444 47899999999999999999999976554443 2448899996 777
Q ss_pred -EEEEECCCcEEEEEccCCceeeeccccccccCCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEccCCCC-
Q 001455 929 -IYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGT- 1006 (1074)
Q Consensus 929 -LlaGs~DgsI~IwDl~tg~~~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S~dDgtI~IWDl~t~~~i~~l~gH~~- 1006 (1074)
+++.+.|..|++|+..+..... ......+|+++..+.++.+++..- .+..+++||+.....++.+.||..
T Consensus 368 ~vl~v~~d~~i~l~~~e~~~dr~-------lise~~~its~~iS~d~k~~LvnL-~~qei~LWDl~e~~lv~kY~Ghkq~ 439 (519)
T KOG0293|consen 368 YVLLVTVDKKIRLYNREARVDRG-------LISEEQPITSFSISKDGKLALVNL-QDQEIHLWDLEENKLVRKYFGHKQG 439 (519)
T ss_pred EEEEEecccceeeechhhhhhhc-------cccccCceeEEEEcCCCcEEEEEc-ccCeeEEeecchhhHHHHhhccccc
Confidence 7778899999999998744321 123478999999999999988654 788999999998888899999876
Q ss_pred -CeEEEEEe-cCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCC-eEEEEEcCC---EEEEEECCCcEEEEec
Q 001455 1007 -TIQAMAVV-EDFIYLNYNSSASSLQIWLRGTQQKVGRISAGSK-ITSLLTAND---IVLCGTETGLIKGWIP 1073 (1074)
Q Consensus 1007 -~VtsLafS-PDG~~LaSGS~DGtIrIWDl~tg~~l~tL~~hs~-VtsLa~dg~---~LaSGs~DG~IrIWdi 1073 (1074)
.+..-+|. .+..+++|||+|+.|+||+..+|+++.++.||.+ |+|++|+|. ++||||+||+||||.+
T Consensus 440 ~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~ 512 (519)
T KOG0293|consen 440 HFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGP 512 (519)
T ss_pred ceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecC
Confidence 44455665 4678999999999999999999999999999976 999999854 9999999999999976
No 4
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.6e-32 Score=298.49 Aligned_cols=273 Identities=17% Similarity=0.230 Sum_probs=236.5
Q ss_pred CCCCcEEEEEEe--CCEEEEEECCCcEEEEECCCCCeeEEEEeccCCCCEEEEEEcC-----CCCEEEEEeCCCeEEEEE
Q 001455 792 KCSGAVTALIYY--KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFE-----PGESLLSGSADKTIGVWQ 864 (1074)
Q Consensus 792 gH~~~VtsLafS--~~~LaSGs~DGtVrIWDl~t~~~~~i~tl~gH~~~VtsLafSp-----dg~~LaSGS~DGtIrIWD 864 (1074)
+|...|.|++|+ +..||+|+.||+|++||.++++. ....+.+|...|++++|.| ..++|++++.||+|+|||
T Consensus 155 gH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~-~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd 233 (480)
T KOG0271|consen 155 GHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQ-IGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWD 233 (480)
T ss_pred CCccEEEEEEECCCcchhhccccCCeEEEecCCCCCc-ccccccCcccceeEEeecccccCCCccceecccCCCCEEEEE
Confidence 999999999999 44799999999999999998875 4678999999999999975 567899999999999999
Q ss_pred ccCCceEEEEEeccCCCeEEEccCC-CeEEEEecCCeEEEEeCCC--ceeeeecC-CCeEEEEEe-------------CC
Q 001455 865 MVQRKLELIEVIATKEPIRKLDTYG-KTIFASTQGHRMKVIDSSR--TLKDIYRS-KGIKSMSVV-------------QG 927 (1074)
Q Consensus 865 l~tg~~~~~~~~~h~~~V~s~s~dg-~~L~sgS~DgtI~VWDl~~--~l~~l~~~-~~V~sLa~s-------------dg 927 (1074)
+..+.+.. ...+|..+|+|+.+.| .++++|+.|++|++|+... ....+.++ +.|+.++.+ +.
T Consensus 234 ~~~~~~~~-~lsgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~ 312 (480)
T KOG0271|consen 234 TKLGTCVR-TLSGHTASVTCVRWGGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGR 312 (480)
T ss_pred ccCceEEE-EeccCccceEEEEEcCCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccc
Confidence 98887544 5678999999998775 4899999999999999873 44444443 346555542 11
Q ss_pred -------------------------EEEEEECCCcEEEEEccCCceeeeccccccccCCCCCeEEEEEcCCceEEEEEec
Q 001455 928 -------------------------KIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSV 982 (1074)
Q Consensus 928 -------------------------kLlaGs~DgsI~IwDl~tg~~~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S~ 982 (1074)
++++|+.|.++.+|+....+ .|.....+|...|+.+.|+||+.++++++
T Consensus 313 ~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~k-----kpi~rmtgHq~lVn~V~fSPd~r~IASaS- 386 (480)
T KOG0271|consen 313 KPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSK-----KPITRMTGHQALVNHVSFSPDGRYIASAS- 386 (480)
T ss_pred cCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccc-----cchhhhhchhhheeeEEECCCccEEEEee-
Confidence 38999999999999986532 33455678999999999999999999988
Q ss_pred CCCeEEEEECCCCCeEEEccCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCcEEEEEeCC-CCeEEEEEc--CCEE
Q 001455 983 EGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAG-SKITSLLTA--NDIV 1059 (1074)
Q Consensus 983 dDgtI~IWDl~t~~~i~~l~gH~~~VtsLafSPDG~~LaSGS~DGtIrIWDl~tg~~l~tL~~h-s~VtsLa~d--g~~L 1059 (1074)
-|+.|++||..+|+.+..+.||-+.|+.++|+.|.++|++||.|.++++|++++.+....+.+| ..|.++.|+ |+.+
T Consensus 387 FDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV 466 (480)
T KOG0271|consen 387 FDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRV 466 (480)
T ss_pred cccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCcee
Confidence 6789999999999999999999999999999999999999999999999999999999999999 459998765 7899
Q ss_pred EEEECCCcEEEEe
Q 001455 1060 LCGTETGLIKGWI 1072 (1074)
Q Consensus 1060 aSGs~DG~IrIWd 1072 (1074)
++|+.|..+++|.
T Consensus 467 ~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 467 ASGGKDKVLRLWR 479 (480)
T ss_pred ecCCCceEEEeec
Confidence 9999999999995
No 5
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.97 E-value=1.1e-27 Score=253.18 Aligned_cols=274 Identities=17% Similarity=0.237 Sum_probs=230.9
Q ss_pred cCCCCCcEEEEEEe---CCEEEEEECCCcEEEEECCCCCe---eEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEE
Q 001455 790 SHKCSGAVTALIYY---KGLLCSGFSDGSIKMWDIKKQSA---MLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVW 863 (1074)
Q Consensus 790 ~~gH~~~VtsLafS---~~~LaSGs~DGtVrIWDl~t~~~---~~i~tl~gH~~~VtsLafSpdg~~LaSGS~DGtIrIW 863 (1074)
..+|++.|+.++.. .+.+.+++.|.++.+|++..... .+.+.++||...|..+..+++|++.+|++.||++++|
T Consensus 11 l~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlW 90 (315)
T KOG0279|consen 11 LEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLW 90 (315)
T ss_pred ecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEEEE
Confidence 34899999999998 45899999999999999875432 2578899999999999999999999999999999999
Q ss_pred EccCCceEEEEEeccCCCeEE--EccCCCeEEEEecCCeEEEEeCCC-ceeeeec---CCCeEEEEEe-C---CEEEEEE
Q 001455 864 QMVQRKLELIEVIATKEPIRK--LDTYGKTIFASTQGHRMKVIDSSR-TLKDIYR---SKGIKSMSVV-Q---GKIYIGC 933 (1074)
Q Consensus 864 Dl~tg~~~~~~~~~h~~~V~s--~s~dg~~L~sgS~DgtI~VWDl~~-~l~~l~~---~~~V~sLa~s-d---gkLlaGs 933 (1074)
|+.+|+. ...+.+|...|.+ |+++++.+++|+.|.+|++|+.-+ +..++.. ...|.|+.|+ + ..+++++
T Consensus 91 Dl~~g~~-t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s 169 (315)
T KOG0279|consen 91 DLATGES-TRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSAS 169 (315)
T ss_pred EecCCcE-EEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEcc
Confidence 9999964 4567789999986 679999999999999999999874 4444433 3459999996 2 2377899
Q ss_pred CCCcEEEEEccCCceeeeccccccccCCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEccCCCCCeEEEEE
Q 001455 934 MDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAV 1013 (1074)
Q Consensus 934 ~DgsI~IwDl~tg~~~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S~dDgtI~IWDl~t~~~i~~l~gH~~~VtsLaf 1013 (1074)
.|++|++||+++-+.. ..+.+|...++.+.++|||..+++++ .||.+.+||++.++.+..+ +|...|.+++|
T Consensus 170 ~DktvKvWnl~~~~l~------~~~~gh~~~v~t~~vSpDGslcasGg-kdg~~~LwdL~~~k~lysl-~a~~~v~sl~f 241 (315)
T KOG0279|consen 170 WDKTVKVWNLRNCQLR------TTFIGHSGYVNTVTVSPDGSLCASGG-KDGEAMLWDLNEGKNLYSL-EAFDIVNSLCF 241 (315)
T ss_pred CCceEEEEccCCcchh------hccccccccEEEEEECCCCCEEecCC-CCceEEEEEccCCceeEec-cCCCeEeeEEe
Confidence 9999999999985543 34568899999999999999999877 8899999999999987766 67888999999
Q ss_pred ecCCCEEEEEECCCcEEEEECCCCcEEEEEeCC--------CCe--EEEEEc--CCEEEEEECCCcEEEEec
Q 001455 1014 VEDFIYLNYNSSASSLQIWLRGTQQKVGRISAG--------SKI--TSLLTA--NDIVLCGTETGLIKGWIP 1073 (1074)
Q Consensus 1014 SPDG~~LaSGS~DGtIrIWDl~tg~~l~tL~~h--------s~V--tsLa~d--g~~LaSGs~DG~IrIWdi 1073 (1074)
+|+..+|+.+. +..|+|||++++..+.++... +.+ .+++|+ |..|++|-.||.|++|.+
T Consensus 242 spnrywL~~at-~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv 312 (315)
T KOG0279|consen 242 SPNRYWLCAAT-ATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQV 312 (315)
T ss_pred cCCceeEeecc-CCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEe
Confidence 99987777665 556999999999998877632 123 446776 889999999999999975
No 6
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.96 E-value=1.1e-27 Score=254.45 Aligned_cols=274 Identities=14% Similarity=0.160 Sum_probs=232.7
Q ss_pred cCCCCCcEEEEEEe--CCEEEEEECCCcEEEEECCCCCeeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEccC
Q 001455 790 SHKCSGAVTALIYY--KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQ 867 (1074)
Q Consensus 790 ~~gH~~~VtsLafS--~~~LaSGs~DGtVrIWDl~t~~~~~i~tl~gH~~~VtsLafSpdg~~LaSGS~DGtIrIWDl~t 867 (1074)
..||.+.|.++.|+ ..++++++.||.+.|||.-+... .+-++-....|..++|+|.|+++++||.|+...||++.+
T Consensus 51 LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK--~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~ 128 (343)
T KOG0286|consen 51 LKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNK--VHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLST 128 (343)
T ss_pred ecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccc--eeEEecCceeEEEEEECCCCCeEEecCcCceeEEEeccc
Confidence 44999999999999 45899999999999999987754 455666678999999999999999999999999999985
Q ss_pred C--c---eEEEEEeccCCCeEEEc-cCCCeEEEEecCCeEEEEeCCCce--eeeec-CCCeEEEEEe--CCE-EEEEECC
Q 001455 868 R--K---LELIEVIATKEPIRKLD-TYGKTIFASTQGHRMKVIDSSRTL--KDIYR-SKGIKSMSVV--QGK-IYIGCMD 935 (1074)
Q Consensus 868 g--~---~~~~~~~~h~~~V~s~s-~dg~~L~sgS~DgtI~VWDl~~~l--~~l~~-~~~V~sLa~s--dgk-LlaGs~D 935 (1074)
. + .....+.+|...+.+.. .+...|++++.|.++.+||++... ..+.+ ...|.+++++ +++ +++|+.|
T Consensus 129 ~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD 208 (343)
T KOG0286|consen 129 RDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCD 208 (343)
T ss_pred ccccccceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccc
Confidence 4 1 23445778998888743 457789999999999999998433 33333 3459899985 444 7889999
Q ss_pred CcEEEEEccCCceeeeccccccccCCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEccCC--CCCeEEEEE
Q 001455 936 SSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEK--GTTIQAMAV 1013 (1074)
Q Consensus 936 gsI~IwDl~tg~~~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S~dDgtI~IWDl~t~~~i~~l~gH--~~~VtsLaf 1013 (1074)
+..++||++.+... +.|.+|...|+++.|+|+|.-+++++ +|++.++||++..+.+..+... ..+|++++|
T Consensus 209 ~~aklWD~R~~~c~------qtF~ghesDINsv~ffP~G~afatGS-DD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~F 281 (343)
T KOG0286|consen 209 KSAKLWDVRSGQCV------QTFEGHESDINSVRFFPSGDAFATGS-DDATCRLYDLRADQELAVYSHDSIICGITSVAF 281 (343)
T ss_pred cceeeeeccCccee------EeecccccccceEEEccCCCeeeecC-CCceeEEEeecCCcEEeeeccCcccCCceeEEE
Confidence 99999999997654 45688999999999999999999887 9999999999998887777543 348999999
Q ss_pred ecCCCEEEEEECCCcEEEEECCCCcEEEEEeCC-CCeEEEE--EcCCEEEEEECCCcEEEEe
Q 001455 1014 VEDFIYLNYNSSASSLQIWLRGTQQKVGRISAG-SKITSLL--TANDIVLCGTETGLIKGWI 1072 (1074)
Q Consensus 1014 SPDG~~LaSGS~DGtIrIWDl~tg~~l~tL~~h-s~VtsLa--~dg~~LaSGs~DG~IrIWd 1072 (1074)
|..|++|.+|..|.++.+||.-.++.+..+.+| ++|+|+. ++|..+++|+.|.+++||.
T Consensus 282 S~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 282 SKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred cccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 999999999999999999999999999999999 5699855 6788999999999999995
No 7
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.96 E-value=6.4e-28 Score=251.20 Aligned_cols=259 Identities=12% Similarity=0.183 Sum_probs=219.3
Q ss_pred EEEEEECCCcEEEEECCCCCeeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEccCCce-EEEEEeccCCCeEE
Q 001455 806 LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKL-ELIEVIATKEPIRK 884 (1074)
Q Consensus 806 ~LaSGs~DGtVrIWDl~t~~~~~i~tl~gH~~~VtsLafSpdg~~LaSGS~DGtIrIWDl~tg~~-~~~~~~~h~~~V~s 884 (1074)
+|+|+|.|.+||+|...+|.+ ..+++-..+.|+.+...|+++.|++++. -.||+||+++++. ....+.+|...|.+
T Consensus 12 iLvsA~YDhTIRfWqa~tG~C--~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVta 88 (311)
T KOG0315|consen 12 ILVSAGYDHTIRFWQALTGIC--SRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTA 88 (311)
T ss_pred EEEeccCcceeeeeehhcCeE--EEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEE
Confidence 799999999999999999966 7888777789999999999999998885 5699999999876 44456678787875
Q ss_pred --EccCCCeEEEEecCCeEEEEeCC--CceeeeecCCCeEEEEEe--CCEEEEEECCCcEEEEEccCCceeeeccccccc
Q 001455 885 --LDTYGKTIFASTQGHRMKVIDSS--RTLKDIYRSKGIKSMSVV--QGKIYIGCMDSSIQELAVSNNVEREIKAPFKSW 958 (1074)
Q Consensus 885 --~s~dg~~L~sgS~DgtI~VWDl~--~~l~~l~~~~~V~sLa~s--dgkLlaGs~DgsI~IwDl~tg~~~~i~~~~r~~ 958 (1074)
|..+|+.+++|+.||+++|||++ .+.+.+....+|.++... .+.+++|..+|.|++||+..........
T Consensus 89 VgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~li----- 163 (311)
T KOG0315|consen 89 VGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELI----- 163 (311)
T ss_pred EEEeecCeEEEecCCCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccC-----
Confidence 67899999999999999999998 344555667889999985 6779999999999999999865433221
Q ss_pred cCCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCC------eEEEccCCCCCeEEEEEecCCCEEEEEECCCcEEEE
Q 001455 959 RLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKP------QISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIW 1032 (1074)
Q Consensus 959 ~~h~~~I~sL~~spd~i~las~S~dDgtI~IWDl~t~~------~i~~l~gH~~~VtsLafSPDG~~LaSGS~DGtIrIW 1032 (1074)
.....+|.++..+|+|.++++.. ..|+..+|++-++. ++..+..|.+.+..+.+|||++|||++|.|.+++||
T Consensus 164 Pe~~~~i~sl~v~~dgsml~a~n-nkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iw 242 (311)
T KOG0315|consen 164 PEDDTSIQSLTVMPDGSMLAAAN-NKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIW 242 (311)
T ss_pred CCCCcceeeEEEcCCCcEEEEec-CCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEE
Confidence 23368999999999999998876 66899999975543 455677899999999999999999999999999999
Q ss_pred ECCCC-cEEEEEeCCC-CeEEEEEc--CCEEEEEECCCcEEEEec
Q 001455 1033 LRGTQ-QKVGRISAGS-KITSLLTA--NDIVLCGTETGLIKGWIP 1073 (1074)
Q Consensus 1033 Dl~tg-~~l~tL~~hs-~VtsLa~d--g~~LaSGs~DG~IrIWdi 1073 (1074)
+.++. +.-..+++|. +++..+|+ |.||++|+.|+.+++|++
T Consensus 243 n~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~ 287 (311)
T KOG0315|consen 243 NTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDL 287 (311)
T ss_pred ecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeeccc
Confidence 99988 5566778884 59998876 779999999999999986
No 8
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.7e-28 Score=266.63 Aligned_cols=273 Identities=17% Similarity=0.232 Sum_probs=235.4
Q ss_pred CCCCcEEEEEEeCC--EEEEEECCCcEEEEECCCCCeeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEccCCc
Q 001455 792 KCSGAVTALIYYKG--LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRK 869 (1074)
Q Consensus 792 gH~~~VtsLafS~~--~LaSGs~DGtVrIWDl~t~~~~~i~tl~gH~~~VtsLafSpdg~~LaSGS~DGtIrIWDl~tg~ 869 (1074)
+|..+|+.+-|++. .+++++.|++|++||..+++. ...++||.++|..++|+..|+++++++.|-.+++||..+..
T Consensus 106 g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~--e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~ 183 (406)
T KOG0295|consen 106 GHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGEL--ERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFF 183 (406)
T ss_pred ccccceeeeeeccCceEEEEecCCceEEEEEccchhh--hhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHH
Confidence 79999999999955 588888999999999999976 78899999999999999999999999999999999998743
Q ss_pred eEEEEEeccCCCeEE--EccCCCeEEEEecCCeEEEEeCC--CceeeeecC-CCeEEEEEe-CCEEEE-EECCCcEEEEE
Q 001455 870 LELIEVIATKEPIRK--LDTYGKTIFASTQGHRMKVIDSS--RTLKDIYRS-KGIKSMSVV-QGKIYI-GCMDSSIQELA 942 (1074)
Q Consensus 870 ~~~~~~~~h~~~V~s--~s~dg~~L~sgS~DgtI~VWDl~--~~l~~l~~~-~~V~sLa~s-dgkLla-Gs~DgsI~IwD 942 (1074)
.......+|+..|.+ |-|.|+++++++.|.+|+.|+.. -+.+++.++ ..|+.+... ||.+++ ++.|.++++|-
T Consensus 184 ~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~ 263 (406)
T KOG0295|consen 184 RCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWV 263 (406)
T ss_pred HHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEE
Confidence 333455678877775 57899999999999999999988 466666654 458888887 888665 88999999999
Q ss_pred ccCCceeeeccccccccCCCCCeEEEEEcCC---------------ceEEEEEecCCCeEEEEECCCCCeEEEccCCCCC
Q 001455 943 VSNNVEREIKAPFKSWRLQSKPINSLVVYKD---------------WLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTT 1007 (1074)
Q Consensus 943 l~tg~~~~i~~~~r~~~~h~~~I~sL~~spd---------------~i~las~S~dDgtI~IWDl~t~~~i~~l~gH~~~ 1007 (1074)
+.+++.+. .+..|..+|.++++-|. +.++++++ .|++|++||+.++.++.++.+|..+
T Consensus 264 ~~t~~~k~------~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~S-rDktIk~wdv~tg~cL~tL~ghdnw 336 (406)
T KOG0295|consen 264 VATKQCKA------ELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGS-RDKTIKIWDVSTGMCLFTLVGHDNW 336 (406)
T ss_pred eccchhhh------hhhccccceEEEEecccccCcchhhccCCCCCccEEEeec-ccceEEEEeccCCeEEEEEecccce
Confidence 99965433 34677888888887643 24556655 8899999999999999999999999
Q ss_pred eEEEEEecCCCEEEEEECCCcEEEEECCCCcEEEEEeCCC-CeEEEEEcCC--EEEEEECCCcEEEEec
Q 001455 1008 IQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAGS-KITSLLTAND--IVLCGTETGLIKGWIP 1073 (1074)
Q Consensus 1008 VtsLafSPDG~~LaSGS~DGtIrIWDl~tg~~l~tL~~hs-~VtsLa~dg~--~LaSGs~DG~IrIWdi 1073 (1074)
|..++|+|.|+||+|+.+|+++++||++++++..++..|. -|+++.|+.. ++++|+-|.++++|..
T Consensus 337 Vr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 337 VRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred eeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence 9999999999999999999999999999999999999884 4999999843 9999999999999974
No 9
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.96 E-value=1.5e-29 Score=272.13 Aligned_cols=267 Identities=15% Similarity=0.192 Sum_probs=229.3
Q ss_pred CCCCcEEEEEEeCCEEEEEECCCcEEEEECCCCCeeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEccCCceE
Q 001455 792 KCSGAVTALIYYKGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLE 871 (1074)
Q Consensus 792 gH~~~VtsLafS~~~LaSGs~DGtVrIWDl~t~~~~~i~tl~gH~~~VtsLafSpdg~~LaSGS~DGtIrIWDl~tg~~~ 871 (1074)
.....|+|+.+.++.+++|..|++|+|||.++..+ ...+.||++.|.|+.| +.+.++|||.|.+|+|||+++|++.
T Consensus 195 e~skgVYClQYDD~kiVSGlrDnTikiWD~n~~~c--~~~L~GHtGSVLCLqy--d~rviisGSSDsTvrvWDv~tge~l 270 (499)
T KOG0281|consen 195 ENSKGVYCLQYDDEKIVSGLRDNTIKIWDKNSLEC--LKILTGHTGSVLCLQY--DERVIVSGSSDSTVRVWDVNTGEPL 270 (499)
T ss_pred ccCCceEEEEecchhhhcccccCceEEeccccHHH--HHhhhcCCCcEEeeec--cceEEEecCCCceEEEEeccCCchh
Confidence 35789999999999999999999999999998755 6788999999999998 5668999999999999999999865
Q ss_pred EEEEeccCCCeEEEccCCCeEEEEecCCeEEEEeCCCce-----eeeec-CCCeEEEEEeCCEEEEEECCCcEEEEEccC
Q 001455 872 LIEVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSSRTL-----KDIYR-SKGIKSMSVVQGKIYIGCMDSSIQELAVSN 945 (1074)
Q Consensus 872 ~~~~~~h~~~V~s~s~dg~~L~sgS~DgtI~VWDl~~~l-----~~l~~-~~~V~sLa~sdgkLlaGs~DgsI~IwDl~t 945 (1074)
. ....|...|..+...+.++++++.|.++.+||+.... ..+.+ ...|..+.|++..+++++.|.+|++|++.+
T Consensus 271 ~-tlihHceaVLhlrf~ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~kyIVsASgDRTikvW~~st 349 (499)
T KOG0281|consen 271 N-TLIHHCEAVLHLRFSNGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWSTST 349 (499)
T ss_pred h-HHhhhcceeEEEEEeCCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccccceEEEecCCceEEEEeccc
Confidence 4 4567899999999999999999999999999997332 22223 345888999888899999999999999999
Q ss_pred CceeeeccccccccCCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEccCCCCCeEEEEEecCCCEEEEEEC
Q 001455 946 NVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSS 1025 (1074)
Q Consensus 946 g~~~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S~dDgtI~IWDl~t~~~i~~l~gH~~~VtsLafSPDG~~LaSGS~ 1025 (1074)
++.. +.+.+|...|.++.+. +.++++++ .|.+|++||+..|.+++.+.||..-|.++.|. .+.|++|+.
T Consensus 350 ~efv------Rtl~gHkRGIAClQYr--~rlvVSGS-SDntIRlwdi~~G~cLRvLeGHEeLvRciRFd--~krIVSGaY 418 (499)
T KOG0281|consen 350 CEFV------RTLNGHKRGIACLQYR--DRLVVSGS-SDNTIRLWDIECGACLRVLEGHEELVRCIRFD--NKRIVSGAY 418 (499)
T ss_pred eeee------hhhhcccccceehhcc--CeEEEecC-CCceEEEEeccccHHHHHHhchHHhhhheeec--Cceeeeccc
Confidence 7653 5568889999888875 55666666 78999999999999999999999999999995 678999999
Q ss_pred CCcEEEEECCCCcE---------EEEEeCC-CCeEEEEEcCCEEEEEECCCcEEEEecC
Q 001455 1026 ASSLQIWLRGTQQK---------VGRISAG-SKITSLLTANDIVLCGTETGLIKGWIPL 1074 (1074)
Q Consensus 1026 DGtIrIWDl~tg~~---------l~tL~~h-s~VtsLa~dg~~LaSGs~DG~IrIWdil 1074 (1074)
||+|+|||+.++.. +.++..| +.|..+.|+...+++++.|.+|-|||.+
T Consensus 419 DGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD~fqIvsssHddtILiWdFl 477 (499)
T KOG0281|consen 419 DGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDEFQIISSSHDDTILIWDFL 477 (499)
T ss_pred cceEEEEecccccCCcccccchHHHhhhhccceeEEEeecceEEEeccCCCeEEEEEcC
Confidence 99999999877543 4445556 4699999999999999999999999964
No 10
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.96 E-value=2.3e-27 Score=247.04 Aligned_cols=267 Identities=16% Similarity=0.220 Sum_probs=225.2
Q ss_pred cceeeEEEEeecCCCCCcEEEEEEe-CC-EEEEEECCCcEEEEECCCCCeeEEEEeccCCCCEEEEEEcCCCCEEEEEeC
Q 001455 779 ISCVHTQILEASHKCSGAVTALIYY-KG-LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSA 856 (1074)
Q Consensus 779 ~~~~~tl~le~~~gH~~~VtsLafS-~~-~LaSGs~DGtVrIWDl~t~~~~~i~tl~gH~~~VtsLafSpdg~~LaSGS~ 856 (1074)
..|..+.. ...+.|+.+... ++ .||+|+ ...||+||+++++..++.++.+|++.|+++.|..+|++++|||.
T Consensus 30 G~C~rTiq-----h~dsqVNrLeiTpdk~~LAaa~-~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgse 103 (311)
T KOG0315|consen 30 GICSRTIQ-----HPDSQVNRLEITPDKKDLAAAG-NQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSE 103 (311)
T ss_pred CeEEEEEe-----cCccceeeEEEcCCcchhhhcc-CCeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCC
Confidence 44555554 346789999999 44 455554 56799999999988889999999999999999999999999999
Q ss_pred CCeEEEEEccCCceEEEEEeccCCCeEEE--ccCCCeEEEEecCCeEEEEeCCCc--eeeeec--CCCeEEEEEe-CCE-
Q 001455 857 DKTIGVWQMVQRKLELIEVIATKEPIRKL--DTYGKTIFASTQGHRMKVIDSSRT--LKDIYR--SKGIKSMSVV-QGK- 928 (1074)
Q Consensus 857 DGtIrIWDl~tg~~~~~~~~~h~~~V~s~--s~dg~~L~sgS~DgtI~VWDl~~~--l~~l~~--~~~V~sLa~s-dgk- 928 (1074)
||+++|||++.. .+.....+..+|.++ .|+...++++.++|.|++||+... ...+.+ ...|.++.+. +|.
T Consensus 104 Dgt~kIWdlR~~--~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsm 181 (311)
T KOG0315|consen 104 DGTVKIWDLRSL--SCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSM 181 (311)
T ss_pred CceEEEEeccCc--ccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcE
Confidence 999999999984 455666788999875 566678999999999999999843 223332 4468888884 777
Q ss_pred EEEEECCCcEEEEEccCCceeeeccccccccCCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCC-CeEEEccCCCCC
Q 001455 929 IYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRK-PQISIAPEKGTT 1007 (1074)
Q Consensus 929 LlaGs~DgsI~IwDl~tg~~~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S~dDgtI~IWDl~t~-~~i~~l~gH~~~ 1007 (1074)
++++...|..++|++-++.......|...+..|...+....++|++.++++++ .|.+++||+.++. +....+.+|..+
T Consensus 182 l~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~s-sdktv~iwn~~~~~kle~~l~gh~rW 260 (311)
T KOG0315|consen 182 LAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCS-SDKTVKIWNTDDFFKLELVLTGHQRW 260 (311)
T ss_pred EEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeec-CCceEEEEecCCceeeEEEeecCCce
Confidence 45577889999999999877777778888999999999999999999999888 7899999999887 556778899999
Q ss_pred eEEEEEecCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCC-eEEEEE
Q 001455 1008 IQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAGSK-ITSLLT 1054 (1074)
Q Consensus 1008 VtsLafSPDG~~LaSGS~DGtIrIWDl~tg~~l~tL~~hs~-VtsLa~ 1054 (1074)
++..+||.||+||+||+.|+++++|++..++.+..+.+|.+ ..|++.
T Consensus 261 vWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~l 308 (311)
T KOG0315|consen 261 VWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVAL 308 (311)
T ss_pred EEeeeeccCccEEEecCCCCceeecccccCceeeecCCcccccEEEEe
Confidence 99999999999999999999999999999999999999965 555554
No 11
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.96 E-value=4.7e-27 Score=261.98 Aligned_cols=269 Identities=18% Similarity=0.224 Sum_probs=228.9
Q ss_pred CCcEEEEEEe--CCEEEEEECCCcEEEEECCCCCeeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEccCCceE
Q 001455 794 SGAVTALIYY--KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLE 871 (1074)
Q Consensus 794 ~~~VtsLafS--~~~LaSGs~DGtVrIWDl~t~~~~~i~tl~gH~~~VtsLafSpdg~~LaSGS~DGtIrIWDl~tg~~~ 871 (1074)
+..|++++|+ |..||+|+.||.++||+.... ++.++..|+++|.++.|+..|.+|++++.||++.+||..+|...
T Consensus 235 nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~---l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~ 311 (524)
T KOG0273|consen 235 NKDVTSLDWNNDGTLLATGSEDGEARIWNKDGN---LISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVK 311 (524)
T ss_pred cCCcceEEecCCCCeEEEeecCcEEEEEecCch---hhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEE
Confidence 5789999999 669999999999999998865 36788899999999999999999999999999999999998754
Q ss_pred EEEEeccCCCeEEEc-cCCCeEEEEecCCeEEEEeCC--Cceeeeec-CCCeEEEEEe-CCE-EEEEECCCcEEEEEccC
Q 001455 872 LIEVIATKEPIRKLD-TYGKTIFASTQGHRMKVIDSS--RTLKDIYR-SKGIKSMSVV-QGK-IYIGCMDSSIQELAVSN 945 (1074)
Q Consensus 872 ~~~~~~h~~~V~s~s-~dg~~L~sgS~DgtI~VWDl~--~~l~~l~~-~~~V~sLa~s-dgk-LlaGs~DgsI~IwDl~t 945 (1074)
. .+.-|..+-..+. .+...+++.+.|+.|+|+.+. ++..++.+ ++.|.++.|. .|. +++++.|+++++|+...
T Consensus 312 q-~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~ 390 (524)
T KOG0273|consen 312 Q-QFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQ 390 (524)
T ss_pred E-eeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCC
Confidence 3 3444555534444 345688999999999999987 56666665 5569999996 666 55689999999999876
Q ss_pred CceeeeccccccccCCCCCeEEEEEcCCce---------EEEEEecCCCeEEEEECCCCCeEEEccCCCCCeEEEEEecC
Q 001455 946 NVEREIKAPFKSWRLQSKPINSLVVYKDWL---------YSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVED 1016 (1074)
Q Consensus 946 g~~~~i~~~~r~~~~h~~~I~sL~~spd~i---------~las~S~dDgtI~IWDl~t~~~i~~l~gH~~~VtsLafSPD 1016 (1074)
+.. ...+..|...|.++.++|.+. .+++.+ .|++|++||+..+.++..+..|..+|.+++|+|+
T Consensus 391 ~~~------~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas-~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~ 463 (524)
T KOG0273|consen 391 SNS------VHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASAS-FDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPN 463 (524)
T ss_pred Ccc------hhhhhhhccceeeEeecCCCCccCCCcCCceEEEee-cCCeEEEEEccCCceeEeeccCCCceEEEEecCC
Confidence 443 245578899999999987642 344444 6899999999999999999999999999999999
Q ss_pred CCEEEEEECCCcEEEEECCCCcEEEEEeCCCCeEEEEEc--CCEEEEEECCCcEEEEec
Q 001455 1017 FIYLNYNSSASSLQIWLRGTQQKVGRISAGSKITSLLTA--NDIVLCGTETGLIKGWIP 1073 (1074)
Q Consensus 1017 G~~LaSGS~DGtIrIWDl~tg~~l~tL~~hs~VtsLa~d--g~~LaSGs~DG~IrIWdi 1073 (1074)
|+|+|+|+.||.|.||+.++++.++.+.+.+.|..+.|+ |+.|..+-.||.+++-|.
T Consensus 464 g~ylAsGs~dg~V~iws~~~~~l~~s~~~~~~Ifel~Wn~~G~kl~~~~sd~~vcvldl 522 (524)
T KOG0273|consen 464 GRYLASGSLDGCVHIWSTKTGKLVKSYQGTGGIFELCWNAAGDKLGACASDGSVCVLDL 522 (524)
T ss_pred CcEEEecCCCCeeEeccccchheeEeecCCCeEEEEEEcCCCCEEEEEecCCCceEEEe
Confidence 999999999999999999999999999999899999987 889999999999998775
No 12
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.96 E-value=3.2e-27 Score=251.77 Aligned_cols=272 Identities=15% Similarity=0.205 Sum_probs=232.3
Q ss_pred cCCCCCcEEEEEEe--CCEEEEEECCCcEEEEECCCCCeeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEccC
Q 001455 790 SHKCSGAVTALIYY--KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQ 867 (1074)
Q Consensus 790 ~~gH~~~VtsLafS--~~~LaSGs~DGtVrIWDl~t~~~~~i~tl~gH~~~VtsLafSpdg~~LaSGS~DGtIrIWDl~t 867 (1074)
..+|.+.|+.+.|+ +.+|||||.|..|.+|++... ++-...+++|+++|..+.|.+|+..++|+|.|++|+.||.++
T Consensus 43 l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gd-ceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~t 121 (338)
T KOG0265|consen 43 LPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGD-CENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAET 121 (338)
T ss_pred cCCCcceEEEEEECCCCCeEeecCCcceEEEEecccc-ccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEeccc
Confidence 34899999999999 558999999999999997753 345788899999999999999999999999999999999999
Q ss_pred CceEEEEEeccCCCeEEEccC---CCeEEEEecCCeEEEEeCC--CceeeeecCCCeEEEEEe--CCEEEEEECCCcEEE
Q 001455 868 RKLELIEVIATKEPIRKLDTY---GKTIFASTQGHRMKVIDSS--RTLKDIYRSKGIKSMSVV--QGKIYIGCMDSSIQE 940 (1074)
Q Consensus 868 g~~~~~~~~~h~~~V~s~s~d---g~~L~sgS~DgtI~VWDl~--~~l~~l~~~~~V~sLa~s--dgkLlaGs~DgsI~I 940 (1074)
|+... ....|...|.++.|. ...+.+++.|+++++||++ ...+++...-.++++.|. ..++++|+-|+.|++
T Consensus 122 G~~~r-k~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~ikv 200 (338)
T KOG0265|consen 122 GKRIR-KHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDNDIKV 200 (338)
T ss_pred ceeee-hhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccceeeccccCceee
Confidence 98654 445677777777653 3478899999999999998 445555556779999997 556999999999999
Q ss_pred EEccCCceeeeccccccccCCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCC----CCeEEEccCCCC----CeEEEE
Q 001455 941 LAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHR----KPQISIAPEKGT----TIQAMA 1012 (1074)
Q Consensus 941 wDl~tg~~~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S~dDgtI~IWDl~t----~~~i~~l~gH~~----~VtsLa 1012 (1074)
||++.+... ....+|..+|+.+..++++.++.+.+ -|.++++||.+. .+++..+.+|.. ....++
T Consensus 201 Wd~r~~d~~------~~lsGh~DtIt~lsls~~gs~llsns-Md~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cs 273 (338)
T KOG0265|consen 201 WDLRKNDGL------YTLSGHADTITGLSLSRYGSFLLSNS-MDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCS 273 (338)
T ss_pred eccccCcce------EEeecccCceeeEEeccCCCcccccc-ccceEEEEEecccCCCCceEEEeecchhhhhhhcceee
Confidence 999876543 34578999999999999999999877 788999999753 456778877754 456788
Q ss_pred EecCCCEEEEEECCCcEEEEECCCCcEEEEEeCC-CCeEEEEEcCC--EEEEEECCCcEEE
Q 001455 1013 VVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAG-SKITSLLTAND--IVLCGTETGLIKG 1070 (1074)
Q Consensus 1013 fSPDG~~LaSGS~DGtIrIWDl~tg~~l~tL~~h-s~VtsLa~dg~--~LaSGs~DG~IrI 1070 (1074)
|+|++.++.+|+.|..+++||......+..+.|| +.|+++.|++. +|.+++.|.+|++
T Consensus 274 wsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~l 334 (338)
T KOG0265|consen 274 WSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYL 334 (338)
T ss_pred ccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEe
Confidence 9999999999999999999999999999999999 55999998854 9999999999986
No 13
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.96 E-value=4.6e-26 Score=242.88 Aligned_cols=271 Identities=22% Similarity=0.327 Sum_probs=225.4
Q ss_pred CCCCcEEEEEEe--CCEEEEEECCCcEEEEECCCCCeeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEccCCc
Q 001455 792 KCSGAVTALIYY--KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRK 869 (1074)
Q Consensus 792 gH~~~VtsLafS--~~~LaSGs~DGtVrIWDl~t~~~~~i~tl~gH~~~VtsLafSpdg~~LaSGS~DGtIrIWDl~tg~ 869 (1074)
+|.++|++++|+ ++++++|+.||.|++|+..+++ ....+.+|...+..+.|+|+++.+++++.||.|++||+.+++
T Consensus 7 ~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~ 84 (289)
T cd00200 7 GHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGE--LLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGE 84 (289)
T ss_pred ccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCC--cEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCccc
Confidence 789999999999 4689999999999999999775 356778999999999999999999999999999999998865
Q ss_pred eEEEEEeccCCCeEEE--ccCCCeEEEEecCCeEEEEeCCC--ceeeee-cCCCeEEEEEe-CCEEEE-EECCCcEEEEE
Q 001455 870 LELIEVIATKEPIRKL--DTYGKTIFASTQGHRMKVIDSSR--TLKDIY-RSKGIKSMSVV-QGKIYI-GCMDSSIQELA 942 (1074)
Q Consensus 870 ~~~~~~~~h~~~V~s~--s~dg~~L~sgS~DgtI~VWDl~~--~l~~l~-~~~~V~sLa~s-dgkLla-Gs~DgsI~IwD 942 (1074)
... ....|...+.++ .+++..+++++.++.+.+||+.. ....+. +...+.++.+. ++.+++ ++.|+.|++||
T Consensus 85 ~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d 163 (289)
T cd00200 85 CVR-TLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWD 163 (289)
T ss_pred ceE-EEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEE
Confidence 433 344677677764 55667888888899999999972 233333 34469999997 566655 44599999999
Q ss_pred ccCCceeeeccccccccCCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEccCCCCCeEEEEEecCCCEEEE
Q 001455 943 VSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNY 1022 (1074)
Q Consensus 943 l~tg~~~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S~dDgtI~IWDl~t~~~i~~l~gH~~~VtsLafSPDG~~LaS 1022 (1074)
+.+++... .+..+...+.++.+++++..+++++ .++.+++||...+.....+..|...+.++.|+|++.++++
T Consensus 164 ~~~~~~~~------~~~~~~~~i~~~~~~~~~~~l~~~~-~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 236 (289)
T cd00200 164 LRTGKCVA------TLTGHTGEVNSVAFSPDGEKLLSSS-SDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLAS 236 (289)
T ss_pred ccccccce------eEecCccccceEEECCCcCEEEEec-CCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEE
Confidence 98755432 3346677999999999997776666 4889999999998888888889999999999999999999
Q ss_pred EECCCcEEEEECCCCcEEEEEeCCC-CeEEEEEcC--CEEEEEECCCcEEEEe
Q 001455 1023 NSSASSLQIWLRGTQQKVGRISAGS-KITSLLTAN--DIVLCGTETGLIKGWI 1072 (1074)
Q Consensus 1023 GS~DGtIrIWDl~tg~~l~tL~~hs-~VtsLa~dg--~~LaSGs~DG~IrIWd 1072 (1074)
++.||.|++|+..+++.+..+..|. .|.++.|++ ++|++++.||.|++|+
T Consensus 237 ~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 237 GSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred EcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 9889999999999999999998874 599988874 7999999999999996
No 14
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.96 E-value=1.4e-27 Score=258.44 Aligned_cols=272 Identities=16% Similarity=0.204 Sum_probs=233.2
Q ss_pred ecCCCCCcEEEEEEe--CCEEEEEECCCcEEEEECCCCCeeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcc
Q 001455 789 ASHKCSGAVTALIYY--KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMV 866 (1074)
Q Consensus 789 ~~~gH~~~VtsLafS--~~~LaSGs~DGtVrIWDl~t~~~~~i~tl~gH~~~VtsLafSpdg~~LaSGS~DGtIrIWDl~ 866 (1074)
...+|.+.|.|+++. +.+|+||+.|++++|||+.+++. ..++.||...|..+++|+-..++++++.|+.|+.||+.
T Consensus 146 Vi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~L--kltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe 223 (460)
T KOG0285|consen 146 VISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQL--KLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLE 223 (460)
T ss_pred hhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeE--EEeecchhheeeeeeecccCceEEEecCCCeeEEEech
Confidence 344999999999999 55899999999999999999954 77899999999999999999999999999999999999
Q ss_pred CCceEEEEEeccCCCeEEEccC--CCeEEEEecCCeEEEEeCCC--ceeeeec-CCCeEEEEEe--CCEEEEEECCCcEE
Q 001455 867 QRKLELIEVIATKEPIRKLDTY--GKTIFASTQGHRMKVIDSSR--TLKDIYR-SKGIKSMSVV--QGKIYIGCMDSSIQ 939 (1074)
Q Consensus 867 tg~~~~~~~~~h~~~V~s~s~d--g~~L~sgS~DgtI~VWDl~~--~l~~l~~-~~~V~sLa~s--dgkLlaGs~DgsI~ 939 (1074)
.++.+. ...+|-..|.+++.+ -+.+++++.|.+++|||++. .+..+.+ ...|.++.+. ++++++|+.|++|+
T Consensus 224 ~nkvIR-~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvr 302 (460)
T KOG0285|consen 224 YNKVIR-HYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVR 302 (460)
T ss_pred hhhhHH-HhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEE
Confidence 887544 567899999998755 77999999999999999984 4445554 4568888885 99999999999999
Q ss_pred EEEccCCceeeeccccccccCCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEccCCCCCeEEEEEecCCCE
Q 001455 940 ELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIY 1019 (1074)
Q Consensus 940 IwDl~tg~~~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S~dDgtI~IWDl~t~~~i~~l~gH~~~VtsLafSPDG~~ 1019 (1074)
+||+..|+.... ...|...+.+++.||....+++++++ .|+-|++..|..++.+.+|...|+++....|| +
T Consensus 303 lWDl~agkt~~t------lt~hkksvral~lhP~e~~fASas~d--nik~w~~p~g~f~~nlsgh~~iintl~~nsD~-v 373 (460)
T KOG0285|consen 303 LWDLRAGKTMIT------LTHHKKSVRALCLHPKENLFASASPD--NIKQWKLPEGEFLQNLSGHNAIINTLSVNSDG-V 373 (460)
T ss_pred EeeeccCceeEe------eecccceeeEEecCCchhhhhccCCc--cceeccCCccchhhccccccceeeeeeeccCc-e
Confidence 999999875432 35678899999999998888887744 59999999999999999999999999998776 6
Q ss_pred EEEEECCCcEEEEECCCCcEEEEEe---CC------CCeEEEEEc--CCEEEEEECCCcEEEEe
Q 001455 1020 LNYNSSASSLQIWLRGTQQKVGRIS---AG------SKITSLLTA--NDIVLCGTETGLIKGWI 1072 (1074)
Q Consensus 1020 LaSGS~DGtIrIWDl~tg~~l~tL~---~h------s~VtsLa~d--g~~LaSGs~DG~IrIWd 1072 (1074)
+++|++.|.+.+||.++|...+.++ .. ..|.+.+|| |..|++|..|.+|++|.
T Consensus 374 ~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~k 437 (460)
T KOG0285|consen 374 LVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYK 437 (460)
T ss_pred EEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEe
Confidence 7889999999999999987765543 22 237888887 77999999999999996
No 15
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.96 E-value=1.6e-27 Score=280.08 Aligned_cols=235 Identities=16% Similarity=0.266 Sum_probs=202.8
Q ss_pred CCcEEEEEEe-C-CEEEEEECCCcEEEEECCCCCe-----------------------------eEEEEeccCCCCEEEE
Q 001455 794 SGAVTALIYY-K-GLLCSGFSDGSIKMWDIKKQSA-----------------------------MLVWDVKEHRKAVTSF 842 (1074)
Q Consensus 794 ~~~VtsLafS-~-~~LaSGs~DGtVrIWDl~t~~~-----------------------------~~i~tl~gH~~~VtsL 842 (1074)
...|+|..|+ + .++|.|..|..|++|.+...+. ....++.||.++|..+
T Consensus 378 ~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~ 457 (707)
T KOG0263|consen 378 YQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGC 457 (707)
T ss_pred CCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeee
Confidence 4679999999 3 3799999999999999873110 1235577999999999
Q ss_pred EEcCCCCEEEEEeCCCeEEEEEccCCceEEEEEeccCCCeEE--EccCCCeEEEEecCCeEEEEeCCCceeeeecCCCeE
Q 001455 843 SLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATKEPIRK--LDTYGKTIFASTQGHRMKVIDSSRTLKDIYRSKGIK 920 (1074)
Q Consensus 843 afSpdg~~LaSGS~DGtIrIWDl~tg~~~~~~~~~h~~~V~s--~s~dg~~L~sgS~DgtI~VWDl~~~l~~l~~~~~V~ 920 (1074)
.|+|+.++|++||.|++||+|.+.+..+.. ...+|..||+. |+|.|-++++++.|++-++|..
T Consensus 458 sFsPd~rfLlScSED~svRLWsl~t~s~~V-~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~-------------- 522 (707)
T KOG0263|consen 458 SFSPDRRFLLSCSEDSSVRLWSLDTWSCLV-IYKGHLAPVWDVQFAPRGYYFATASHDQTARLWST-------------- 522 (707)
T ss_pred eecccccceeeccCCcceeeeecccceeEE-EecCCCcceeeEEecCCceEEEecCCCceeeeeec--------------
Confidence 999999999999999999999999987544 44488888875 6788888888877776666654
Q ss_pred EEEEeCCEEEEEECCCcEEEEEccCCceeeeccccccccCCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEE
Q 001455 921 SMSVVQGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISI 1000 (1074)
Q Consensus 921 sLa~sdgkLlaGs~DgsI~IwDl~tg~~~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S~dDgtI~IWDl~t~~~i~~ 1000 (1074)
.. ..|.|.+.+|-..+.|+.|||+..|+++++ .|.++++||..+|..++.
T Consensus 523 -----------------------d~------~~PlRifaghlsDV~cv~FHPNs~Y~aTGS-sD~tVRlWDv~~G~~VRi 572 (707)
T KOG0263|consen 523 -----------------------DH------NKPLRIFAGHLSDVDCVSFHPNSNYVATGS-SDRTVRLWDVSTGNSVRI 572 (707)
T ss_pred -----------------------cc------CCchhhhcccccccceEEECCcccccccCC-CCceEEEEEcCCCcEEEE
Confidence 22 123467788999999999999999999986 889999999999999999
Q ss_pred ccCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCcEEEEEeCCC-CeEEEEEc--CCEEEEEECCCcEEEEec
Q 001455 1001 APEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAGS-KITSLLTA--NDIVLCGTETGLIKGWIP 1073 (1074)
Q Consensus 1001 l~gH~~~VtsLafSPDG~~LaSGS~DGtIrIWDl~tg~~l~tL~~hs-~VtsLa~d--g~~LaSGs~DG~IrIWdi 1073 (1074)
|.||.++|++++|||+|+||++|+.||.|.+||+.++..+..+.+|. .|.+++|+ |..||+||.|.+|++||.
T Consensus 573 F~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~ 648 (707)
T KOG0263|consen 573 FTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDL 648 (707)
T ss_pred ecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEc
Confidence 99999999999999999999999999999999999999999999994 48888775 889999999999999996
No 16
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=5.6e-28 Score=266.65 Aligned_cols=232 Identities=15% Similarity=0.236 Sum_probs=206.0
Q ss_pred CCCCcEEEEEEe-C--C-EEEEEECCCcEEEEECCCCCeeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEccC
Q 001455 792 KCSGAVTALIYY-K--G-LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQ 867 (1074)
Q Consensus 792 gH~~~VtsLafS-~--~-~LaSGs~DGtVrIWDl~t~~~~~i~tl~gH~~~VtsLafSpdg~~LaSGS~DGtIrIWDl~t 867 (1074)
||.+.|.++.|+ . + .+|||+.||+|++|++++. .++..+.+|...|..++|+|+|++|+|++.|.+-++||+.+
T Consensus 215 gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e--~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~t 292 (459)
T KOG0272|consen 215 GHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQE--TPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLET 292 (459)
T ss_pred ccccceeeEEEccCCCccceeeeccCCceeeeccCCC--cchhhhhcchhhheeeeecCCCceeeecccccchhhccccc
Confidence 999999999999 2 2 6999999999999999976 45889999999999999999999999999999999999999
Q ss_pred CceEEEEEeccCCCeEE--EccCCCeEEEEecCCeEEEEeCC--Cceeeeec-CCCeEEEEEe-CCE-EEEEECCCcEEE
Q 001455 868 RKLELIEVIATKEPIRK--LDTYGKTIFASTQGHRMKVIDSS--RTLKDIYR-SKGIKSMSVV-QGK-IYIGCMDSSIQE 940 (1074)
Q Consensus 868 g~~~~~~~~~h~~~V~s--~s~dg~~L~sgS~DgtI~VWDl~--~~l~~l~~-~~~V~sLa~s-dgk-LlaGs~DgsI~I 940 (1074)
+.. .....+|...|.+ |.++|..+++|+.|..-+|||++ +++..+.+ .+.|.+|+|+ +|. +++|+.|++++|
T Consensus 293 k~E-lL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kV 371 (459)
T KOG0272|consen 293 KSE-LLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKV 371 (459)
T ss_pred chh-hHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEE
Confidence 864 3456789999986 56899999999999999999998 44444444 4679999997 888 667999999999
Q ss_pred EEccCCceeeeccccccccCCCCCeEEEEEcC-CceEEEEEecCCCeEEEEECCCCCeEEEccCCCCCeEEEEEecCCCE
Q 001455 941 LAVSNNVEREIKAPFKSWRLQSKPINSLVVYK-DWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIY 1019 (1074)
Q Consensus 941 wDl~tg~~~~i~~~~r~~~~h~~~I~sL~~sp-d~i~las~S~dDgtI~IWDl~t~~~i~~l~gH~~~VtsLafSPDG~~ 1019 (1074)
||++.... ...+..|..-|+.+.|.| .|.++++++ -|+++++|...+..+++.+.||.+.|.+++.+||+.+
T Consensus 372 WDLR~r~~------ly~ipAH~nlVS~Vk~~p~~g~fL~Tas-yD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~ 444 (459)
T KOG0272|consen 372 WDLRMRSE------LYTIPAHSNLVSQVKYSPQEGYFLVTAS-YDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQA 444 (459)
T ss_pred eeeccccc------ceecccccchhhheEecccCCeEEEEcc-cCcceeeecCCCcccchhhcCCccceEEEEeccCCce
Confidence 99998544 345578999999999998 677888777 7889999999999999999999999999999999999
Q ss_pred EEEEECCCcEEEEE
Q 001455 1020 LNYNSSASSLQIWL 1033 (1074)
Q Consensus 1020 LaSGS~DGtIrIWD 1033 (1074)
++|++.|.++++|.
T Consensus 445 i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 445 IATSSFDRTIKLWR 458 (459)
T ss_pred EEEeccCceeeecc
Confidence 99999999999995
No 17
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.95 E-value=1.4e-26 Score=269.16 Aligned_cols=288 Identities=19% Similarity=0.271 Sum_probs=231.6
Q ss_pred cceeeEEEEeecCCCCCcEEEEEEeCC----EEEEEECCCcEEEEECCCCCeeEEEEeccCCCCEEEEEEcCCCCEEEEE
Q 001455 779 ISCVHTQILEASHKCSGAVTALIYYKG----LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSG 854 (1074)
Q Consensus 779 ~~~~~tl~le~~~gH~~~VtsLafS~~----~LaSGs~DGtVrIWDl~t~~~~~i~tl~gH~~~VtsLafSpdg~~LaSG 854 (1074)
..|.|.+. ||.|.|+++.|++. .|++|+.|++|++||+.+... +++++..|.+.|++++|++|+..++++
T Consensus 137 ~~~th~fk-----G~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~t-cl~~~~~H~S~vtsL~~~~d~~~~ls~ 210 (775)
T KOG0319|consen 137 GYCTHSFK-----GHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRT-CLHTMILHKSAVTSLAFSEDSLELLSV 210 (775)
T ss_pred CEEEEEec-----CCCceEEEEEeCCccchhheeecCCCceEEEEEcccCch-HHHHHHhhhhheeeeeeccCCceEEEe
Confidence 44777776 99999999999933 489999999999999996543 567888999999999999999999999
Q ss_pred eCCCeEEEEEccCCceE---------------------------------------------------------------
Q 001455 855 SADKTIGVWQMVQRKLE--------------------------------------------------------------- 871 (1074)
Q Consensus 855 S~DGtIrIWDl~tg~~~--------------------------------------------------------------- 871 (1074)
|.|..+.+||+.+-+..
T Consensus 211 ~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~ 290 (775)
T KOG0319|consen 211 GRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAI 290 (775)
T ss_pred ccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceec
Confidence 99999999986321100
Q ss_pred -------------------------------------------------------------------EEEEeccCCCeEE
Q 001455 872 -------------------------------------------------------------------LIEVIATKEPIRK 884 (1074)
Q Consensus 872 -------------------------------------------------------------------~~~~~~h~~~V~s 884 (1074)
+....+|.+.|.+
T Consensus 291 ~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlS 370 (775)
T KOG0319|consen 291 ESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLS 370 (775)
T ss_pred cccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheee
Confidence 2223456666666
Q ss_pred Ec--cCCCeEEEEecCCeEEEEeCCC-c-----eeeee-cCCCeEEEEEe-CC--EEEEEECCCcEEEEEccCCceeee-
Q 001455 885 LD--TYGKTIFASTQGHRMKVIDSSR-T-----LKDIY-RSKGIKSMSVV-QG--KIYIGCMDSSIQELAVSNNVEREI- 951 (1074)
Q Consensus 885 ~s--~dg~~L~sgS~DgtI~VWDl~~-~-----l~~l~-~~~~V~sLa~s-dg--kLlaGs~DgsI~IwDl~tg~~~~i- 951 (1074)
++ ..|..+++++.|.++++|.++. + ..... +...|.+++++ .+ -+++++.|+++++|++...+....
T Consensus 371 L~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~ 450 (775)
T KOG0319|consen 371 LDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFP 450 (775)
T ss_pred eeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCccccccc
Confidence 55 4556888999999999998742 1 11122 24568888887 22 267799999999999987333221
Q ss_pred --ccccccccCCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEccCCCCCeEEEEEecCCCEEEEEECCCcE
Q 001455 952 --KAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSL 1029 (1074)
Q Consensus 952 --~~~~r~~~~h~~~I~sL~~spd~i~las~S~dDgtI~IWDl~t~~~i~~l~gH~~~VtsLafSPDG~~LaSGS~DGtI 1029 (1074)
+..-.....|...|+++++.|+...+++++ .|++.++|++.......++.||...|+++.|+|..+.++|+|.|++|
T Consensus 451 ~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~S-qDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~Tv 529 (775)
T KOG0319|consen 451 IVLTCRYTERAHDKDINCVAIAPNDKLIATGS-QDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTV 529 (775)
T ss_pred ceehhhHHHHhhcccccceEecCCCceEEecc-cccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceE
Confidence 111113356899999999999999999887 89999999999999999999999999999999999999999999999
Q ss_pred EEEECCCCcEEEEEeCCC-CeEEEEE--cCCEEEEEECCCcEEEEec
Q 001455 1030 QIWLRGTQQKVGRISAGS-KITSLLT--ANDIVLCGTETGLIKGWIP 1073 (1074)
Q Consensus 1030 rIWDl~tg~~l~tL~~hs-~VtsLa~--dg~~LaSGs~DG~IrIWdi 1073 (1074)
+||.+.++.++.+|.||. .|...+| +|..|+|++.||-|++|++
T Consensus 530 KIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWni 576 (775)
T KOG0319|consen 530 KIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNI 576 (775)
T ss_pred EEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEec
Confidence 999999999999999995 4887776 4889999999999999986
No 18
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.95 E-value=3.6e-27 Score=264.02 Aligned_cols=275 Identities=18% Similarity=0.183 Sum_probs=225.9
Q ss_pred CCCCCcEEEEEEe---CCEEEEEECCCcEEEEECCCCCeeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEccC
Q 001455 791 HKCSGAVTALIYY---KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQ 867 (1074)
Q Consensus 791 ~gH~~~VtsLafS---~~~LaSGs~DGtVrIWDl~t~~~~~i~tl~gH~~~VtsLafSpdg~~LaSGS~DGtIrIWDl~t 867 (1074)
+||+..|+++.|. +.+|++|+.|+.|+||++... ..+++++.||..+|..++|+++|..++|+|.|+.+++||+++
T Consensus 211 ~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~-~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtET 289 (503)
T KOG0282|consen 211 SGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDD-RRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTET 289 (503)
T ss_pred cCCccccchhhhccceeeEEEecCCCceEEEEEEecC-cceehhhhcchhhhhhhhccccCCeeeeeecceeeeeecccc
Confidence 3999999999999 458999999999999999872 256899999999999999999999999999999999999999
Q ss_pred CceEEEEEeccCCCeEEEccCC-CeEEEEecCCeEEEEeCCC--ceeeeec-CCCeEEEEEe-CC-EEEEEECCCcEEEE
Q 001455 868 RKLELIEVIATKEPIRKLDTYG-KTIFASTQGHRMKVIDSSR--TLKDIYR-SKGIKSMSVV-QG-KIYIGCMDSSIQEL 941 (1074)
Q Consensus 868 g~~~~~~~~~h~~~V~s~s~dg-~~L~sgS~DgtI~VWDl~~--~l~~l~~-~~~V~sLa~s-dg-kLlaGs~DgsI~Iw 941 (1074)
|++......+....+..+.|++ +.+++|+.|+.|+.||++. .++.+.. -+.|..+.|- +| ++++.+.|+++++|
T Consensus 290 G~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riW 369 (503)
T KOG0282|consen 290 GQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIW 369 (503)
T ss_pred ceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEE
Confidence 9877665555555555677877 7899999999999999983 2333333 4568899995 44 48889999999999
Q ss_pred EccCCceeeeccccccccCCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCC---CeEEEccCCCC--CeEEEEEecC
Q 001455 942 AVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRK---PQISIAPEKGT--TIQAMAVVED 1016 (1074)
Q Consensus 942 Dl~tg~~~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S~dDgtI~IWDl~t~---~~i~~l~gH~~--~VtsLafSPD 1016 (1074)
+...+...... ...+.....++..||++.++++-+ -|+.|.+|.+... ...+.+.||.. .-..+.||||
T Consensus 370 e~~~~v~ik~i-----~~~~~hsmP~~~~~P~~~~~~aQs-~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpD 443 (503)
T KOG0282|consen 370 ENRIPVPIKNI-----ADPEMHTMPCLTLHPNGKWFAAQS-MDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPD 443 (503)
T ss_pred EcCCCccchhh-----cchhhccCcceecCCCCCeehhhc-cCceEEEEecccccccCHhhhhcceeccCceeeEEEcCC
Confidence 99886543321 122344567889999999988766 6788999985432 23456777754 5667899999
Q ss_pred CCEEEEEECCCcEEEEECCCCcEEEEEeCC-CCeEEEEEcC---CEEEEEECCCcEEEEe
Q 001455 1017 FIYLNYNSSASSLQIWLRGTQQKVGRISAG-SKITSLLTAN---DIVLCGTETGLIKGWI 1072 (1074)
Q Consensus 1017 G~~LaSGS~DGtIrIWDl~tg~~l~tL~~h-s~VtsLa~dg---~~LaSGs~DG~IrIWd 1072 (1074)
|.+|++|+.||.+.+||.++-+.+..+++| ..+..+.|++ ..+|+++.||.|++|+
T Consensus 444 G~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 444 GRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred CCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 999999999999999999999999999999 5589999984 4999999999999996
No 19
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.95 E-value=3.3e-26 Score=255.25 Aligned_cols=273 Identities=18% Similarity=0.235 Sum_probs=228.2
Q ss_pred CCCCcEEEEEEe---CCEEEEEECCCcEEEEECCCCC--ee----EEEEe--cc----CCCCEEEEEEcCCCCEEEEEeC
Q 001455 792 KCSGAVTALIYY---KGLLCSGFSDGSIKMWDIKKQS--AM----LVWDV--KE----HRKAVTSFSLFEPGESLLSGSA 856 (1074)
Q Consensus 792 gH~~~VtsLafS---~~~LaSGs~DGtVrIWDl~t~~--~~----~i~tl--~g----H~~~VtsLafSpdg~~LaSGS~ 856 (1074)
.|..+|.+.+|+ ++.+++|+.|-+.++|++.... .. +.+.+ -+ ....|++++|+.+|..|++|+.
T Consensus 176 ~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~~ 255 (524)
T KOG0273|consen 176 RHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGSE 255 (524)
T ss_pred cCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEeec
Confidence 489999999999 5589999999999999987411 11 11111 11 2357999999999999999999
Q ss_pred CCeEEEEEccCCceEEEEEeccCCCeEEE--ccCCCeEEEEecCCeEEEEeCC--CceeeeecCCCe-EEEEEe-CCEEE
Q 001455 857 DKTIGVWQMVQRKLELIEVIATKEPIRKL--DTYGKTIFASTQGHRMKVIDSS--RTLKDIYRSKGI-KSMSVV-QGKIY 930 (1074)
Q Consensus 857 DGtIrIWDl~tg~~~~~~~~~h~~~V~s~--s~dg~~L~sgS~DgtI~VWDl~--~~l~~l~~~~~V-~sLa~s-dgkLl 930 (1074)
||.+++|+...+. ...+..|+.||.++ ...|.+|++++.|+++.+||.. ...+.+..+... ..+.|- +..++
T Consensus 256 ~G~~riw~~~G~l--~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ 333 (524)
T KOG0273|consen 256 DGEARIWNKDGNL--ISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFA 333 (524)
T ss_pred CcEEEEEecCchh--hhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCceEe
Confidence 9999999986542 33566799999986 5667799999999999999985 233333334444 568885 77899
Q ss_pred EEECCCcEEEEEccCCceeeeccccccccCCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEccCCCCCeEE
Q 001455 931 IGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQA 1010 (1074)
Q Consensus 931 aGs~DgsI~IwDl~tg~~~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S~dDgtI~IWDl~t~~~i~~l~gH~~~Vts 1010 (1074)
+.+.|+.|+++.+.. ..|...+.+|..+|..+.+.|.+..+++++ +|++++||+.........+.+|...|..
T Consensus 334 ts~td~~i~V~kv~~------~~P~~t~~GH~g~V~alk~n~tg~LLaS~S-dD~TlkiWs~~~~~~~~~l~~Hskei~t 406 (524)
T KOG0273|consen 334 TSSTDGCIHVCKVGE------DRPVKTFIGHHGEVNALKWNPTGSLLASCS-DDGTLKIWSMGQSNSVHDLQAHSKEIYT 406 (524)
T ss_pred ecCCCceEEEEEecC------CCcceeeecccCceEEEEECCCCceEEEec-CCCeeEeeecCCCcchhhhhhhccceee
Confidence 999999999999877 345566788999999999999999999888 8999999999888889999999999999
Q ss_pred EEEecCC---------CEEEEEECCCcEEEEECCCCcEEEEEeCC-CCeEEEEEc--CCEEEEEECCCcEEEEec
Q 001455 1011 MAVVEDF---------IYLNYNSSASSLQIWLRGTQQKVGRISAG-SKITSLLTA--NDIVLCGTETGLIKGWIP 1073 (1074)
Q Consensus 1011 LafSPDG---------~~LaSGS~DGtIrIWDl~tg~~l~tL~~h-s~VtsLa~d--g~~LaSGs~DG~IrIWdi 1073 (1074)
+.|+|+| ..+++++.|++|++||...|.++++|..| .+|.+++|+ |+++++|+.||.|.+|++
T Consensus 407 ~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~ 481 (524)
T KOG0273|consen 407 IKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWST 481 (524)
T ss_pred EeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccc
Confidence 9999865 47899999999999999999999999888 559999887 789999999999999985
No 20
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.95 E-value=3.5e-26 Score=249.81 Aligned_cols=270 Identities=14% Similarity=0.179 Sum_probs=223.4
Q ss_pred CCCCcEEEEEEeCCEEEEEECCCcEEEEECCCCCeeEEEEeccCCCCEEEEEEcCCCC---EEEEEeCCCeEEEEEccCC
Q 001455 792 KCSGAVTALIYYKGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGE---SLLSGSADKTIGVWQMVQR 868 (1074)
Q Consensus 792 gH~~~VtsLafS~~~LaSGs~DGtVrIWDl~t~~~~~i~tl~gH~~~VtsLafSpdg~---~LaSGS~DGtIrIWDl~tg 868 (1074)
-|.+.|.+|...++.++||++||.+++||..+. .+.++.||.++|.+++|.-... .++++|.|.++++|.++.+
T Consensus 103 ~hdDWVSsv~~~~~~IltgsYDg~~riWd~~Gk---~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~ 179 (423)
T KOG0313|consen 103 LHDDWVSSVKGASKWILTGSYDGTSRIWDLKGK---SIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVG 179 (423)
T ss_pred cchhhhhhhcccCceEEEeecCCeeEEEecCCc---eEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCc
Confidence 589999999999999999999999999998864 3678899999999988864443 4999999999999999877
Q ss_pred ceEEE---EEeccCCCeEEEc--cCCCeEEEEecCCeEEEEeCCC---------------------------ceeeeec-
Q 001455 869 KLELI---EVIATKEPIRKLD--TYGKTIFASTQGHRMKVIDSSR---------------------------TLKDIYR- 915 (1074)
Q Consensus 869 ~~~~~---~~~~h~~~V~s~s--~dg~~L~sgS~DgtI~VWDl~~---------------------------~l~~l~~- 915 (1074)
..... ...+|+..|.+++ ++|..+++|+.|.++++|+... ...++.+
T Consensus 180 ~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GH 259 (423)
T KOG0313|consen 180 ENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGH 259 (423)
T ss_pred hhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEeccc
Confidence 54211 1238999998865 7888999999999999999320 0111222
Q ss_pred CCCeEEEEEe-CCEEEEEECCCcEEEEEccCCceeeeccccccccCCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCC
Q 001455 916 SKGIKSMSVV-QGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHR 994 (1074)
Q Consensus 916 ~~~V~sLa~s-dgkLlaGs~DgsI~IwDl~tg~~~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S~dDgtI~IWDl~t 994 (1074)
...|.++.|+ .+.+++++.|.+|+.||+.++...... ..+..++++..+|....+++++ .|..+++||.++
T Consensus 260 t~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~~~~~~-------~~~ksl~~i~~~~~~~Ll~~gs-sdr~irl~DPR~ 331 (423)
T KOG0313|consen 260 TEPVSSVVWSDATVIYSVSWDHTIKVWDLETGGLKSTL-------TTNKSLNCISYSPLSKLLASGS-SDRHIRLWDPRT 331 (423)
T ss_pred ccceeeEEEcCCCceEeecccceEEEEEeecccceeee-------ecCcceeEeecccccceeeecC-CCCceeecCCCC
Confidence 3458899998 566889999999999999998775432 2367899999999888888777 788999999876
Q ss_pred CC---eEEEccCCCCCeEEEEEecCC-CEEEEEECCCcEEEEECCCCc-EEEEEeCC-CCeEEEEEc-CCEEEEEECCCc
Q 001455 995 KP---QISIAPEKGTTIQAMAVVEDF-IYLNYNSSASSLQIWLRGTQQ-KVGRISAG-SKITSLLTA-NDIVLCGTETGL 1067 (1074)
Q Consensus 995 ~~---~i~~l~gH~~~VtsLafSPDG-~~LaSGS~DGtIrIWDl~tg~-~l~tL~~h-s~VtsLa~d-g~~LaSGs~DG~ 1067 (1074)
+. ..+.+.+|.++|.++.|+|.. ..+++|+.||++++||+++.. ++..+.+| .+|.++.|+ +..+++||.|.+
T Consensus 332 ~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~~~~IvSGGaD~~ 411 (423)
T KOG0313|consen 332 GDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNEGGLIVSGGADNK 411 (423)
T ss_pred CCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccCCceEEeccCcce
Confidence 53 467889999999999999954 568899999999999988877 89999999 559999998 569999999999
Q ss_pred EEEEe
Q 001455 1068 IKGWI 1072 (1074)
Q Consensus 1068 IrIWd 1072 (1074)
|+|+.
T Consensus 412 l~i~~ 416 (423)
T KOG0313|consen 412 LRIFK 416 (423)
T ss_pred EEEec
Confidence 99985
No 21
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.95 E-value=2e-25 Score=237.14 Aligned_cols=238 Identities=12% Similarity=0.134 Sum_probs=206.3
Q ss_pred EEEeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEccCCceEEEEEeccCCCeE--EEccCCCeEEEEecCCeEEEEeC
Q 001455 829 VWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATKEPIR--KLDTYGKTIFASTQGHRMKVIDS 906 (1074)
Q Consensus 829 i~tl~gH~~~VtsLafSpdg~~LaSGS~DGtIrIWDl~tg~~~~~~~~~h~~~V~--s~s~dg~~L~sgS~DgtI~VWDl 906 (1074)
.++++||.+.|.++.|++|+++|+|+|.||.+.|||.-+..... ..+-....|. +++|.|+++++|+-|+...||++
T Consensus 48 rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~h-aipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~l 126 (343)
T KOG0286|consen 48 RRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVH-AIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPL 126 (343)
T ss_pred EEEecccccceeeeEecCCcCeEEeeccCCeEEEEEccccccee-EEecCceeEEEEEECCCCCeEEecCcCceeEEEec
Confidence 47889999999999999999999999999999999998765433 2333444554 48999999999999999999998
Q ss_pred CCc--------eeeeec-CCCeEEEEEe-CCEEEEEECCCcEEEEEccCCceeeeccccccccCCCCCeEEEEEcC-Cce
Q 001455 907 SRT--------LKDIYR-SKGIKSMSVV-QGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYK-DWL 975 (1074)
Q Consensus 907 ~~~--------l~~l~~-~~~V~sLa~s-dgkLlaGs~DgsI~IwDl~tg~~~~i~~~~r~~~~h~~~I~sL~~sp-d~i 975 (1074)
... .+.+.+ ...+.|..|. |+++++|+.|.+..+||+.+|+.... +.+|...|.++.+.| ++.
T Consensus 127 s~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~------f~GH~gDV~slsl~p~~~n 200 (343)
T KOG0286|consen 127 STRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQV------FHGHTGDVMSLSLSPSDGN 200 (343)
T ss_pred ccccccccceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccceEEEE------ecCCcccEEEEecCCCCCC
Confidence 721 222333 3458899996 88899999999999999999887644 478999999999999 788
Q ss_pred EEEEEecCCCeEEEEECCCCCeEEEccCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCcEEEEEeCC---CCeEEE
Q 001455 976 YSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAG---SKITSL 1052 (1074)
Q Consensus 976 ~las~S~dDgtI~IWDl~t~~~i~~l~gH~~~VtsLafSPDG~~LaSGS~DGtIrIWDl~tg~~l~tL~~h---s~VtsL 1052 (1074)
..++++ -|+..++||++.+.+++.|.+|...|+++.|.|+|.-+++||+|++.++||++..+.+..+... .+|+++
T Consensus 201 tFvSg~-cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv 279 (343)
T KOG0286|consen 201 TFVSGG-CDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSV 279 (343)
T ss_pred eEEecc-cccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeE
Confidence 778776 6789999999999999999999999999999999999999999999999999999999999865 459999
Q ss_pred EEc--CCEEEEEECCCcEEEEecC
Q 001455 1053 LTA--NDIVLCGTETGLIKGWIPL 1074 (1074)
Q Consensus 1053 a~d--g~~LaSGs~DG~IrIWdil 1074 (1074)
+|+ |++|++|..|.++.+||.+
T Consensus 280 ~FS~SGRlLfagy~d~~c~vWDtl 303 (343)
T KOG0286|consen 280 AFSKSGRLLFAGYDDFTCNVWDTL 303 (343)
T ss_pred EEcccccEEEeeecCCceeEeecc
Confidence 886 9999999999999999964
No 22
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.95 E-value=8.2e-25 Score=276.84 Aligned_cols=274 Identities=14% Similarity=0.166 Sum_probs=216.8
Q ss_pred CCCCcEEEEEEe--CCEEEEEECCCcEEEEECCCCC----e--eEEEEeccCCCCEEEEEEcCC-CCEEEEEeCCCeEEE
Q 001455 792 KCSGAVTALIYY--KGLLCSGFSDGSIKMWDIKKQS----A--MLVWDVKEHRKAVTSFSLFEP-GESLLSGSADKTIGV 862 (1074)
Q Consensus 792 gH~~~VtsLafS--~~~LaSGs~DGtVrIWDl~t~~----~--~~i~tl~gH~~~VtsLafSpd-g~~LaSGS~DGtIrI 862 (1074)
.|.+.|++++|+ +.++|+|+.||+|+|||..... . .+...+. +...|.+++|+|. +.+|++|+.||+|++
T Consensus 481 ~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v~l 559 (793)
T PLN00181 481 NSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVVQV 559 (793)
T ss_pred CCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCeEEE
Confidence 689999999999 5689999999999999975421 0 1223343 3568999999875 678999999999999
Q ss_pred EEccCCceEEEEEeccCCCeEEEc--c-CCCeEEEEecCCeEEEEeCCC--ceeeeecCCCeEEEEEe--CCE-EEEEEC
Q 001455 863 WQMVQRKLELIEVIATKEPIRKLD--T-YGKTIFASTQGHRMKVIDSSR--TLKDIYRSKGIKSMSVV--QGK-IYIGCM 934 (1074)
Q Consensus 863 WDl~tg~~~~~~~~~h~~~V~s~s--~-dg~~L~sgS~DgtI~VWDl~~--~l~~l~~~~~V~sLa~s--dgk-LlaGs~ 934 (1074)
||+.+++.. ....+|...|.++. + ++.++++|+.|++|++||+.. ....+..+..+.++.|+ +|. +++|+.
T Consensus 560 Wd~~~~~~~-~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~g~~latgs~ 638 (793)
T PLN00181 560 WDVARSQLV-TEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAFGSA 638 (793)
T ss_pred EECCCCeEE-EEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEEEEeCCCCCEEEEEeC
Confidence 999987644 35568999998754 3 567999999999999999873 34445556678999994 455 777999
Q ss_pred CCcEEEEEccCCceeeeccccccccCCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCC------CCeEEEccCCCCCe
Q 001455 935 DSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHR------KPQISIAPEKGTTI 1008 (1074)
Q Consensus 935 DgsI~IwDl~tg~~~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S~dDgtI~IWDl~t------~~~i~~l~gH~~~V 1008 (1074)
||.|++||++++.. +...+.+|...|.++.|. ++.++++++ .|++|++||+.. ...+..+.+|...+
T Consensus 639 dg~I~iwD~~~~~~-----~~~~~~~h~~~V~~v~f~-~~~~lvs~s-~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i 711 (793)
T PLN00181 639 DHKVYYYDLRNPKL-----PLCTMIGHSKTVSYVRFV-DSSTLVSSS-TDNTLKLWDLSMSISGINETPLHSFMGHTNVK 711 (793)
T ss_pred CCeEEEEECCCCCc-----cceEecCCCCCEEEEEEe-CCCEEEEEE-CCCEEEEEeCCCCccccCCcceEEEcCCCCCe
Confidence 99999999987532 123346788999999997 455666666 789999999864 34677889999999
Q ss_pred EEEEEecCCCEEEEEECCCcEEEEECCCCcEEEEEe-------------CC-CCeEEEEEc--CCEEEEEECCCcEEEEe
Q 001455 1009 QAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRIS-------------AG-SKITSLLTA--NDIVLCGTETGLIKGWI 1072 (1074)
Q Consensus 1009 tsLafSPDG~~LaSGS~DGtIrIWDl~tg~~l~tL~-------------~h-s~VtsLa~d--g~~LaSGs~DG~IrIWd 1072 (1074)
..++|+|++.+|++|+.||.|++|+.....++..+. .+ ..|.+++|+ +.+|++|+.||.|+||+
T Consensus 712 ~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~ 791 (793)
T PLN00181 712 NFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILE 791 (793)
T ss_pred eEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEe
Confidence 999999999999999999999999987765543332 12 238889886 56999999999999999
Q ss_pred cC
Q 001455 1073 PL 1074 (1074)
Q Consensus 1073 il 1074 (1074)
++
T Consensus 792 ~~ 793 (793)
T PLN00181 792 MV 793 (793)
T ss_pred cC
Confidence 86
No 23
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.2e-25 Score=232.52 Aligned_cols=269 Identities=16% Similarity=0.205 Sum_probs=227.6
Q ss_pred cCCCCCcEEEEEEe--CCEEEEEECCCcEEEEECCCCCeeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEccC
Q 001455 790 SHKCSGAVTALIYY--KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQ 867 (1074)
Q Consensus 790 ~~gH~~~VtsLafS--~~~LaSGs~DGtVrIWDl~t~~~~~i~tl~gH~~~VtsLafSpdg~~LaSGS~DGtIrIWDl~t 867 (1074)
...|+++|..+.|+ ++|.++++.|.+|++|+...+. +++++.+|...|..++.+.|+..+++|+.|+.|.+||+.+
T Consensus 13 l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~--liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~T 90 (307)
T KOG0316|consen 13 LDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGA--LIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNT 90 (307)
T ss_pred ecccccceEEEEEccCCCEEEEcCCCceEEeecccccc--eeeeecCCCceeeeccccccccccccCCCCceEEEEEccc
Confidence 34789999999999 7799999999999999999884 5899999999999999999999999999999999999999
Q ss_pred CceEEEEEeccCCCeEEE--ccCCCeEEEEecCCeEEEEeCC----Cceeeeec-CCCeEEEEEeCCEEEEEECCCcEEE
Q 001455 868 RKLELIEVIATKEPIRKL--DTYGKTIFASTQGHRMKVIDSS----RTLKDIYR-SKGIKSMSVVQGKIYIGCMDSSIQE 940 (1074)
Q Consensus 868 g~~~~~~~~~h~~~V~s~--s~dg~~L~sgS~DgtI~VWDl~----~~l~~l~~-~~~V~sLa~sdgkLlaGs~DgsI~I 940 (1074)
|+... .+.+|...|..+ .-....+++|+.|.++++||-+ .+++.+.. ..+|.++.+.+..+++|+.||+++.
T Consensus 91 Gkv~R-r~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~heIvaGS~DGtvRt 169 (307)
T KOG0316|consen 91 GKVDR-RFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAEHEIVAGSVDGTVRT 169 (307)
T ss_pred Ceeee-ecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEecccEEEeeccCCcEEE
Confidence 98554 667899999875 5566799999999999999987 33444443 5679999998889999999999999
Q ss_pred EEccCCceeeeccccccccCCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEccCCCCCeE--EEEEecCCC
Q 001455 941 LAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQ--AMAVVEDFI 1018 (1074)
Q Consensus 941 wDl~tg~~~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S~dDgtI~IWDl~t~~~i~~l~gH~~~Vt--sLafSPDG~ 1018 (1074)
||++.|+...- .-+.||+++.+++++...+.++ -|+++++.|..+|++++.+.||...-. ..+++....
T Consensus 170 ydiR~G~l~sD--------y~g~pit~vs~s~d~nc~La~~-l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdt 240 (307)
T KOG0316|consen 170 YDIRKGTLSSD--------YFGHPITSVSFSKDGNCSLASS-LDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDT 240 (307)
T ss_pred EEeecceeehh--------hcCCcceeEEecCCCCEEEEee-ccceeeecccchhHHHHHhcccccceeeeeeeecccce
Confidence 99999876432 2378999999999999988776 678999999999999999999987433 456677788
Q ss_pred EEEEEECCCcEEEEECCCCcEEEEEeCCCC--eEEEEEcCC--EEEEEECCCcEEEE
Q 001455 1019 YLNYNSSASSLQIWLRGTQQKVGRISAGSK--ITSLLTAND--IVLCGTETGLIKGW 1071 (1074)
Q Consensus 1019 ~LaSGS~DGtIrIWDl~tg~~l~tL~~hs~--VtsLa~dg~--~LaSGs~DG~IrIW 1071 (1074)
.+++||+||.|++||+.+...+..+..++. |+++++++. -+++++. +.+..|
T Consensus 241 hV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~-~~~~~~ 296 (307)
T KOG0316|consen 241 HVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITATG-HGDLFW 296 (307)
T ss_pred eEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEecC-Cceece
Confidence 999999999999999999999999998866 677888755 3444442 334555
No 24
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.95 E-value=1.7e-25 Score=265.87 Aligned_cols=277 Identities=17% Similarity=0.310 Sum_probs=229.6
Q ss_pred CCCCcEEEEEEe--CCEEEEEECCCcEEEEECCCCCeeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEccCCc
Q 001455 792 KCSGAVTALIYY--KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRK 869 (1074)
Q Consensus 792 gH~~~VtsLafS--~~~LaSGs~DGtVrIWDl~t~~~~~i~tl~gH~~~VtsLafSpdg~~LaSGS~DGtIrIWDl~tg~ 869 (1074)
.|...|+++.|+ +..+++++.|+.+++|+..+.+.....++.+|...|.+++|+|++.++++|+.|++|+|||+..+.
T Consensus 157 ~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~ 236 (456)
T KOG0266|consen 157 HECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDG 236 (456)
T ss_pred cccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCC
Confidence 458999999999 568999999999999999766522466778999999999999999999999999999999995543
Q ss_pred eEEEEEeccCCCeEE--EccCCCeEEEEecCCeEEEEeCCC--ceeeeec-CCCeEEEEEe-CCE-EEEEECCCcEEEEE
Q 001455 870 LELIEVIATKEPIRK--LDTYGKTIFASTQGHRMKVIDSSR--TLKDIYR-SKGIKSMSVV-QGK-IYIGCMDSSIQELA 942 (1074)
Q Consensus 870 ~~~~~~~~h~~~V~s--~s~dg~~L~sgS~DgtI~VWDl~~--~l~~l~~-~~~V~sLa~s-dgk-LlaGs~DgsI~IwD 942 (1074)
.......+|...|++ |++.++.+++|+.|++|++||+.. ....+.. ...|.+++|+ ++. +++++.|+.|++||
T Consensus 237 ~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd 316 (456)
T KOG0266|consen 237 RNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWD 316 (456)
T ss_pred eEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEE
Confidence 344566699999986 678899999999999999999983 4455554 4579999997 665 67788999999999
Q ss_pred ccCCceeeeccccccccCCCC--CeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEccCCCCC---eEEEEEecCC
Q 001455 943 VSNNVEREIKAPFKSWRLQSK--PINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTT---IQAMAVVEDF 1017 (1074)
Q Consensus 943 l~tg~~~~i~~~~r~~~~h~~--~I~sL~~spd~i~las~S~dDgtI~IWDl~t~~~i~~l~gH~~~---VtsLafSPDG 1017 (1074)
+.++... ....+..+.. +++++.|+|++.++++.. .|+.+++||+..+.....+.+|... +.+...++.|
T Consensus 317 ~~~~~~~----~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~-~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (456)
T KOG0266|consen 317 LETGSKL----CLKLLSGAENSAPVTSVQFSPNGKYLLSAS-LDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGG 391 (456)
T ss_pred CCCCcee----eeecccCCCCCCceeEEEECCCCcEEEEec-CCCeEEEEEccCCcceeeecccCCcceeEecccccCCC
Confidence 9998742 0111222222 699999999999999887 7889999999999999999998875 3344557899
Q ss_pred CEEEEEECCCcEEEEECCCCcEEEEEeCC-C-CeEEEEEc--CCEEEEEE--CCCcEEEEec
Q 001455 1018 IYLNYNSSASSLQIWLRGTQQKVGRISAG-S-KITSLLTA--NDIVLCGT--ETGLIKGWIP 1073 (1074)
Q Consensus 1018 ~~LaSGS~DGtIrIWDl~tg~~l~tL~~h-s-~VtsLa~d--g~~LaSGs--~DG~IrIWdi 1073 (1074)
.++++|+.|+.|++|+..++..+..+.+| . .|..++++ ..++++++ .|+.|++|..
T Consensus 392 ~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~ 453 (456)
T KOG0266|consen 392 KLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKY 453 (456)
T ss_pred CeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecC
Confidence 99999999999999999999999999999 3 36666665 66888888 7999999963
No 25
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.94 E-value=2.7e-25 Score=258.66 Aligned_cols=271 Identities=13% Similarity=0.199 Sum_probs=231.8
Q ss_pred CCCCcEEEEEEeC---CEEEEEECCCcEEEEECCCCCeeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEccCC
Q 001455 792 KCSGAVTALIYYK---GLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQR 868 (1074)
Q Consensus 792 gH~~~VtsLafS~---~~LaSGs~DGtVrIWDl~t~~~~~i~tl~gH~~~VtsLafSpdg~~LaSGS~DGtIrIWDl~tg 868 (1074)
|-++.|..++|-| +++|.++..+.+|+|+..+..+ ..+.||++.|.++....+|..|+|||.|+++++|.++++
T Consensus 321 G~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c---~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~ 397 (775)
T KOG0319|consen 321 GYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYC---QIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNN 397 (775)
T ss_pred CCchhheeeeecCCccceEEEEeCCCceEEEecCCCce---EEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCC
Confidence 7789999999994 6899999999999999998876 367899999999997778889999999999999988554
Q ss_pred ceE---EEEEeccCCCeEEEc---cCCCeEEEEecCCeEEEEeCCC-------ceee-----eecCCCeEEEEEe-CCE-
Q 001455 869 KLE---LIEVIATKEPIRKLD---TYGKTIFASTQGHRMKVIDSSR-------TLKD-----IYRSKGIKSMSVV-QGK- 928 (1074)
Q Consensus 869 ~~~---~~~~~~h~~~V~s~s---~dg~~L~sgS~DgtI~VWDl~~-------~l~~-----l~~~~~V~sLa~s-dgk- 928 (1074)
... .....+|.+.|.++. .....+++++.|+++++|++.+ .... ..+.+.|.|++++ +++
T Consensus 398 ~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkL 477 (775)
T KOG0319|consen 398 CSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKL 477 (775)
T ss_pred cchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCce
Confidence 321 223457888887754 2344899999999999999875 1111 1236679999997 666
Q ss_pred EEEEECCCcEEEEEccCCceeeeccccccccCCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEccCCCCCe
Q 001455 929 IYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTI 1008 (1074)
Q Consensus 929 LlaGs~DgsI~IwDl~tg~~~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S~dDgtI~IWDl~t~~~i~~l~gH~~~V 1008 (1074)
+++|+.|.+.++|++...... ..+.+|...+.++.|++....+++++ .|++|+||.+.+..+++++.||...|
T Consensus 478 iAT~SqDktaKiW~le~~~l~------~vLsGH~RGvw~V~Fs~~dq~laT~S-gD~TvKIW~is~fSClkT~eGH~~aV 550 (775)
T KOG0319|consen 478 IATGSQDKTAKIWDLEQLRLL------GVLSGHTRGVWCVSFSKNDQLLATCS-GDKTVKIWSISTFSCLKTFEGHTSAV 550 (775)
T ss_pred EEecccccceeeecccCceEE------EEeeCCccceEEEEeccccceeEecc-CCceEEEEEeccceeeeeecCcccee
Confidence 555999999999999965443 45689999999999999999888877 78999999999999999999999999
Q ss_pred EEEEEecCCCEEEEEECCCcEEEEECCCCcEEEEEeCC-CCeEEEEEc--CCEEEEEECCCcEEEEe
Q 001455 1009 QAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAG-SKITSLLTA--NDIVLCGTETGLIKGWI 1072 (1074)
Q Consensus 1009 tsLafSPDG~~LaSGS~DGtIrIWDl~tg~~l~tL~~h-s~VtsLa~d--g~~LaSGs~DG~IrIWd 1072 (1074)
....|-.+|..|+|++.||-|++|++++++++.++..| .+|++++-+ ..++++|+.||.|.+|.
T Consensus 551 lra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wk 617 (775)
T KOG0319|consen 551 LRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWK 617 (775)
T ss_pred EeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEee
Confidence 99999999999999999999999999999999999999 569998865 56999999999999996
No 26
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=3.5e-24 Score=225.91 Aligned_cols=275 Identities=12% Similarity=0.183 Sum_probs=217.8
Q ss_pred eecCCCCCcEEEEEEeCC---EEEEEECCCcEEEEECCCC-CeeEEEEe-ccCCCCEEEEEEcCCCCEEEEEeCCCeEEE
Q 001455 788 EASHKCSGAVTALIYYKG---LLCSGFSDGSIKMWDIKKQ-SAMLVWDV-KEHRKAVTSFSLFEPGESLLSGSADKTIGV 862 (1074)
Q Consensus 788 e~~~gH~~~VtsLafS~~---~LaSGs~DGtVrIWDl~t~-~~~~i~tl-~gH~~~VtsLafSpdg~~LaSGS~DGtIrI 862 (1074)
+..++|.+.|+.++|+++ .|||||.|..||||+...+ ...+...+ .+|+..|.+++|+|.|++|++||.|.++.|
T Consensus 8 ~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~I 87 (312)
T KOG0645|consen 8 QKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVI 87 (312)
T ss_pred EeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEE
Confidence 345699999999999944 6999999999999999843 23333333 389999999999999999999999999999
Q ss_pred EEccCCceEEEE-EeccCCCeEE--EccCCCeEEEEecCCeEEEEeCC-----Cceeeeec-CCCeEEEEEe--CCEEEE
Q 001455 863 WQMVQRKLELIE-VIATKEPIRK--LDTYGKTIFASTQGHRMKVIDSS-----RTLKDIYR-SKGIKSMSVV--QGKIYI 931 (1074)
Q Consensus 863 WDl~tg~~~~~~-~~~h~~~V~s--~s~dg~~L~sgS~DgtI~VWDl~-----~~l~~l~~-~~~V~sLa~s--dgkLla 931 (1074)
|.-..+...+.. ..+|.+.|.+ ++.+|++|++++.|..|-||.+. .+...+.. ...|+.+.|. .+-+++
T Consensus 88 w~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S 167 (312)
T KOG0645|consen 88 WKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFS 167 (312)
T ss_pred eecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEE
Confidence 998877766654 4489999986 67899999999999999999987 23444444 4569999995 566888
Q ss_pred EECCCcEEEEEccCCc-eeeeccccccccCCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEccCCCCCeEE
Q 001455 932 GCMDSSIQELAVSNNV-EREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQA 1010 (1074)
Q Consensus 932 Gs~DgsI~IwDl~tg~-~~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S~dDgtI~IWDl~t~~~i~~l~gH~~~Vts 1010 (1074)
++.|++|++|+-..+. -.. ...+.+|...|-++.|++.|..+++++ +|++++||...+.- ...|...++.
T Consensus 168 ~SYDnTIk~~~~~~dddW~c----~~tl~g~~~TVW~~~F~~~G~rl~s~s-dD~tv~Iw~~~~~~----~~~~sr~~Y~ 238 (312)
T KOG0645|consen 168 CSYDNTIKVYRDEDDDDWEC----VQTLDGHENTVWSLAFDNIGSRLVSCS-DDGTVSIWRLYTDL----SGMHSRALYD 238 (312)
T ss_pred eccCCeEEEEeecCCCCeeE----EEEecCccceEEEEEecCCCceEEEec-CCcceEeeeeccCc----chhcccceEe
Confidence 9999999999887322 221 245578888999999999998888887 89999999865322 2237788999
Q ss_pred EEEecCCCEEEEEECCCcEEEEECCCC--cE----EE-EEeCCC-CeEEEEEcC---CEEEEEECCCcEEEEec
Q 001455 1011 MAVVEDFIYLNYNSSASSLQIWLRGTQ--QK----VG-RISAGS-KITSLLTAN---DIVLCGTETGLIKGWIP 1073 (1074)
Q Consensus 1011 LafSPDG~~LaSGS~DGtIrIWDl~tg--~~----l~-tL~~hs-~VtsLa~dg---~~LaSGs~DG~IrIWdi 1073 (1074)
+.|. ...|+|++.|+.|++|..... .+ +. .-..|. .|+++.|++ +.|++|++||.|++|..
T Consensus 239 v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l 310 (312)
T KOG0645|consen 239 VPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWEL 310 (312)
T ss_pred eeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEe
Confidence 9998 457999999999999985542 11 11 122343 399999985 49999999999999975
No 27
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.94 E-value=3e-24 Score=249.75 Aligned_cols=279 Identities=17% Similarity=0.257 Sum_probs=228.4
Q ss_pred cceeeEEEEeecCCCCCcEEEEEEe--CCEEEEEECC-CcEEEEECCCCCeeEEEEeccCCCCEEEEEEcCCCCEEEEEe
Q 001455 779 ISCVHTQILEASHKCSGAVTALIYY--KGLLCSGFSD-GSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGS 855 (1074)
Q Consensus 779 ~~~~~tl~le~~~gH~~~VtsLafS--~~~LaSGs~D-GtVrIWDl~t~~~~~i~tl~gH~~~VtsLafSpdg~~LaSGS 855 (1074)
..++|.+. -...+|..++|+ |+++|.|+.. |.+-||+.++... +...++|...+++++++|||++++||+
T Consensus 297 f~lih~LS-----is~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsY--VlKQQgH~~~i~~l~YSpDgq~iaTG~ 369 (893)
T KOG0291|consen 297 FNLIHSLS-----ISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESY--VLKQQGHSDRITSLAYSPDGQLIATGA 369 (893)
T ss_pred ceEEEEee-----cccceeeEEEecccCCEEEEcCCccceEEEEEeeccce--eeeccccccceeeEEECCCCcEEEecc
Confidence 56777765 235789999999 8899988766 8999999998755 677789999999999999999999999
Q ss_pred CCCeEEEEEccCCceEEEEEeccCCCeEE--EccCCCeEEEEecCCeEEEEeCC--CceeeeecCCCe--EEEEEe-CCE
Q 001455 856 ADKTIGVWQMVQRKLELIEVIATKEPIRK--LDTYGKTIFASTQGHRMKVIDSS--RTLKDIYRSKGI--KSMSVV-QGK 928 (1074)
Q Consensus 856 ~DGtIrIWDl~tg~~~~~~~~~h~~~V~s--~s~dg~~L~sgS~DgtI~VWDl~--~~l~~l~~~~~V--~sLa~s-dgk 928 (1074)
.||.|+|||...|-|.. .+..|.+.|+. |...++.+++.+-||+|+.||+. +..+++....++ .|++.. .|.
T Consensus 370 eDgKVKvWn~~SgfC~v-TFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGe 448 (893)
T KOG0291|consen 370 EDGKVKVWNTQSGFCFV-TFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGE 448 (893)
T ss_pred CCCcEEEEeccCceEEE-EeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCC
Confidence 99999999999987654 45678888876 67889999999999999999998 567777766664 466664 677
Q ss_pred EEE-EECCC-cEEEEEccCCceeeeccccccccCCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCC-CeEEEccCCC
Q 001455 929 IYI-GCMDS-SIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRK-PQISIAPEKG 1005 (1074)
Q Consensus 929 Lla-Gs~Dg-sI~IwDl~tg~~~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S~dDgtI~IWDl~t~-~~i~~l~gH~ 1005 (1074)
+++ |+.|. .|.+|++++|+...+ +.+|..||.++.|+|.+..+++++ -|.+|++||+-.. ..+.++ .+.
T Consensus 449 lV~AG~~d~F~IfvWS~qTGqllDi------LsGHEgPVs~l~f~~~~~~LaS~S-WDkTVRiW~if~s~~~vEtl-~i~ 520 (893)
T KOG0291|consen 449 LVCAGAQDSFEIFVWSVQTGQLLDI------LSGHEGPVSGLSFSPDGSLLASGS-WDKTVRIWDIFSSSGTVETL-EIR 520 (893)
T ss_pred EEEeeccceEEEEEEEeecCeeeeh------hcCCCCcceeeEEccccCeEEecc-ccceEEEEEeeccCceeeeE-eec
Confidence 665 66665 599999999988654 479999999999999999999887 7899999996433 233333 466
Q ss_pred CCeEEEEEecCCCEEEEEECCCcEEEEECCCCcEEEEEeCC--------------------CC-eEEE--EEcCCEEEEE
Q 001455 1006 TTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAG--------------------SK-ITSL--LTANDIVLCG 1062 (1074)
Q Consensus 1006 ~~VtsLafSPDG~~LaSGS~DGtIrIWDl~tg~~l~tL~~h--------------------s~-VtsL--a~dg~~LaSG 1062 (1074)
..+..++|+|||+-|+++.-||.|.+||.+.+..+.++.+- ++ .+.+ ++||..+++|
T Consensus 521 sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAg 600 (893)
T KOG0291|consen 521 SDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAG 600 (893)
T ss_pred cceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEec
Confidence 67999999999999999999999999998887776555431 11 4444 4679999999
Q ss_pred ECCCcEEEEec
Q 001455 1063 TETGLIKGWIP 1073 (1074)
Q Consensus 1063 s~DG~IrIWdi 1073 (1074)
|..+.|++|++
T Consensus 601 G~sn~iCiY~v 611 (893)
T KOG0291|consen 601 GESNSICIYDV 611 (893)
T ss_pred CCcccEEEEEC
Confidence 99999999985
No 28
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=4.4e-25 Score=252.11 Aligned_cols=269 Identities=13% Similarity=0.217 Sum_probs=232.7
Q ss_pred CCCCcEEEEEEe--CCEEEEEECCCcEEEEECCCCCeeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEccCCc
Q 001455 792 KCSGAVTALIYY--KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRK 869 (1074)
Q Consensus 792 gH~~~VtsLafS--~~~LaSGs~DGtVrIWDl~t~~~~~i~tl~gH~~~VtsLafSpdg~~LaSGS~DGtIrIWDl~tg~ 869 (1074)
.|++.|.+|.++ ..+++++-.+|.|.|||.++.. .+..+.-..-||.+..|-+-.+++++|++|..||||+..+++
T Consensus 11 ~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqt--mVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~e 88 (794)
T KOG0276|consen 11 SRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQT--MVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGE 88 (794)
T ss_pred ccCCceeeeecCCCCceEEEeeecCeeEEEecccce--eeeeeeecccchhhheeeeccceEEEecCCceEEEEecccce
Confidence 478999999999 5589999999999999999874 478888888999999999999999999999999999999987
Q ss_pred eEEEEEeccCCCeEEEc--cCCCeEEEEecCCeEEEEeCCC---ceeeeecC-CCeEEEEEe---CCEEEEEECCCcEEE
Q 001455 870 LELIEVIATKEPIRKLD--TYGKTIFASTQGHRMKVIDSSR---TLKDIYRS-KGIKSMSVV---QGKIYIGCMDSSIQE 940 (1074)
Q Consensus 870 ~~~~~~~~h~~~V~s~s--~dg~~L~sgS~DgtI~VWDl~~---~l~~l~~~-~~V~sLa~s---dgkLlaGs~DgsI~I 940 (1074)
. ...+..|.+.|.++. |...++++++.|-+|++||.++ +.+++.+| +.|.+++|. .+.++++|-|++|++
T Consensus 89 k-V~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKV 167 (794)
T KOG0276|consen 89 K-VKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKV 167 (794)
T ss_pred e-eEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEE
Confidence 4 446778999999976 4455999999999999999984 55566554 459999994 455888999999999
Q ss_pred EEccCCceeeeccccccccCCCCCeEEEEEcCCc--eEEEEEecCCCeEEEEECCCCCeEEEccCCCCCeEEEEEecCCC
Q 001455 941 LAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDW--LYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFI 1018 (1074)
Q Consensus 941 wDl~tg~~~~i~~~~r~~~~h~~~I~sL~~spd~--i~las~S~dDgtI~IWDl~t~~~i~~l~gH~~~VtsLafSPDG~ 1018 (1074)
|.+.... +..++.+|...|+++.+.+.+ .++++++ +|.++++||.++..+++++.||...|..+.|+|.-.
T Consensus 168 Wslgs~~------~nfTl~gHekGVN~Vdyy~~gdkpylIsga-DD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lp 240 (794)
T KOG0276|consen 168 WSLGSPH------PNFTLEGHEKGVNCVDYYTGGDKPYLISGA-DDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELP 240 (794)
T ss_pred EEcCCCC------CceeeeccccCcceEEeccCCCcceEEecC-CCceEEEeecchHHHHHHhhcccccceEEEecCCCc
Confidence 9997733 335668999999999998655 6888877 999999999999999999999999999999999999
Q ss_pred EEEEEECCCcEEEEECCCCcEEEEEeCC-CCeEEEEE--cCCEEEEEECCCcEEE
Q 001455 1019 YLNYNSSASSLQIWLRGTQQKVGRISAG-SKITSLLT--ANDIVLCGTETGLIKG 1070 (1074)
Q Consensus 1019 ~LaSGS~DGtIrIWDl~tg~~l~tL~~h-s~VtsLa~--dg~~LaSGs~DG~IrI 1070 (1074)
.++|||+||+++||+..+-+...++.-+ .+|+|++. .++.++.|.+.|.|.+
T Consensus 241 iiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 241 IIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTV 295 (794)
T ss_pred EEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEEE
Confidence 9999999999999999998888888765 66999984 3567888988887754
No 29
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.94 E-value=5.1e-26 Score=250.18 Aligned_cols=269 Identities=14% Similarity=0.204 Sum_probs=227.7
Q ss_pred CCcEEEEEEe--CCEEEEEECCCcEEEEECCCCCeeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEccCCceE
Q 001455 794 SGAVTALIYY--KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLE 871 (1074)
Q Consensus 794 ~~~VtsLafS--~~~LaSGs~DGtVrIWDl~t~~~~~i~tl~gH~~~VtsLafSpdg~~LaSGS~DGtIrIWDl~tg~~~ 871 (1074)
.-+|..|.|. |..|++|+..|.+.+|+..+-.. ...++.|.++|.++.|+++|.+++||+.+|.|++|+..-...
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnF--EtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnV- 172 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNF--ETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNV- 172 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCceeeH--HHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhh-
Confidence 3489999999 45899999999999999865432 233579999999999999999999999999999999875542
Q ss_pred EEEEeccCCCeEE--EccCCCeEEEEecCCeEEEEeCC--CceeeeecCC-CeEEEEEe--CCEEEEEECCCcEEEEEcc
Q 001455 872 LIEVIATKEPIRK--LDTYGKTIFASTQGHRMKVIDSS--RTLKDIYRSK-GIKSMSVV--QGKIYIGCMDSSIQELAVS 944 (1074)
Q Consensus 872 ~~~~~~h~~~V~s--~s~dg~~L~sgS~DgtI~VWDl~--~~l~~l~~~~-~V~sLa~s--dgkLlaGs~DgsI~IwDl~ 944 (1074)
......|...|++ |+|....+++++.||+|+|||.. .....+.+++ .|+++.|. .|.+++|+.|..|++||.+
T Consensus 173 k~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDpr 252 (464)
T KOG0284|consen 173 KIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPR 252 (464)
T ss_pred HHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCC
Confidence 2223345577875 67888899999999999999987 3344455544 59999995 6778899999999999999
Q ss_pred CCceeeeccccccccCCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEccCCCCCeEEEEEec-CCCEEEEE
Q 001455 945 NNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVE-DFIYLNYN 1023 (1074)
Q Consensus 945 tg~~~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S~dDgtI~IWDl~t~~~i~~l~gH~~~VtsLafSP-DG~~LaSG 1023 (1074)
+|.+.. .+..|+..|..+.|.+++.++++.+ .|..++++|+++-+.+..+.+|...|+++.|+| ...++.+|
T Consensus 253 Sg~cl~------tlh~HKntVl~~~f~~n~N~Llt~s-kD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsg 325 (464)
T KOG0284|consen 253 SGSCLA------TLHGHKNTVLAVKFNPNGNWLLTGS-KDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSG 325 (464)
T ss_pred Ccchhh------hhhhccceEEEEEEcCCCCeeEEcc-CCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeec
Confidence 987643 3468899999999999999999988 889999999998888889999999999999999 66788999
Q ss_pred ECCCcEEEEECCCCcEEEEEeC-C-CCeEEEEEc--CCEEEEEECCCcEEEEe
Q 001455 1024 SSASSLQIWLRGTQQKVGRISA-G-SKITSLLTA--NDIVLCGTETGLIKGWI 1072 (1074)
Q Consensus 1024 S~DGtIrIWDl~tg~~l~tL~~-h-s~VtsLa~d--g~~LaSGs~DG~IrIWd 1072 (1074)
+.||.|..|.+...+++..+.. | +.|++++|+ |.+|++|+.|.+++.|.
T Consensus 326 g~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~ 378 (464)
T KOG0284|consen 326 GSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWT 378 (464)
T ss_pred cCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeec
Confidence 9999999999987777777763 4 459999998 88999999999999995
No 30
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.93 E-value=3.3e-26 Score=246.45 Aligned_cols=228 Identities=15% Similarity=0.215 Sum_probs=201.5
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCeEEEEEccCCceEEEEEeccCCCeEEEccCCCeEEEEecCCeEEEEeCC--Cceee
Q 001455 835 HRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSS--RTLKD 912 (1074)
Q Consensus 835 H~~~VtsLafSpdg~~LaSGS~DGtIrIWDl~tg~~~~~~~~~h~~~V~s~s~dg~~L~sgS~DgtI~VWDl~--~~l~~ 912 (1074)
...+|.|+.+ |...+++|..|++|+|||..+-.+. ....+|.+.|.|+..+.+.+++|+.|.+|++||++ +++++
T Consensus 196 ~skgVYClQY--DD~kiVSGlrDnTikiWD~n~~~c~-~~L~GHtGSVLCLqyd~rviisGSSDsTvrvWDv~tge~l~t 272 (499)
T KOG0281|consen 196 NSKGVYCLQY--DDEKIVSGLRDNTIKIWDKNSLECL-KILTGHTGSVLCLQYDERVIVSGSSDSTVRVWDVNTGEPLNT 272 (499)
T ss_pred cCCceEEEEe--cchhhhcccccCceEEeccccHHHH-HhhhcCCCcEEeeeccceEEEecCCCceEEEEeccCCchhhH
Confidence 4568999998 6677999999999999998876543 35678999999999999999999999999999988 56666
Q ss_pred eec-CCCeEEEEEeCCEEEEEECCCcEEEEEccCCceeeeccccccccCCCCCeEEEEEcCCceEEEEEecCCCeEEEEE
Q 001455 913 IYR-SKGIKSMSVVQGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWR 991 (1074)
Q Consensus 913 l~~-~~~V~sLa~sdgkLlaGs~DgsI~IwDl~tg~~~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S~dDgtI~IWD 991 (1074)
+.+ ...|..+.|++|.+++++.|.++.+||+........ .+.+.+|...|+.+.|... ++++.+ .|.+|++|+
T Consensus 273 lihHceaVLhlrf~ng~mvtcSkDrsiaVWdm~sps~it~---rrVLvGHrAaVNvVdfd~k--yIVsAS-gDRTikvW~ 346 (499)
T KOG0281|consen 273 LIHHCEAVLHLRFSNGYMVTCSKDRSIAVWDMASPTDITL---RRVLVGHRAAVNVVDFDDK--YIVSAS-GDRTIKVWS 346 (499)
T ss_pred HhhhcceeEEEEEeCCEEEEecCCceeEEEeccCchHHHH---HHHHhhhhhheeeeccccc--eEEEec-CCceEEEEe
Confidence 665 456999999999999999999999999988664443 3677899999999999876 566555 689999999
Q ss_pred CCCCCeEEEccCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCC-eEEEEEcCCEEEEEECCCcEEE
Q 001455 992 RHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAGSK-ITSLLTANDIVLCGTETGLIKG 1070 (1074)
Q Consensus 992 l~t~~~i~~l~gH~~~VtsLafSPDG~~LaSGS~DGtIrIWDl~tg~~l~tL~~hs~-VtsLa~dg~~LaSGs~DG~IrI 1070 (1074)
+.+++.++++.+|...|-++.+ .|+++++||.|.+|++||...|.+++.++||.. |.|+.|+.+.+++|+.||+|+|
T Consensus 347 ~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd~krIVSGaYDGkikv 424 (499)
T KOG0281|consen 347 TSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKV 424 (499)
T ss_pred ccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeecCceeeeccccceEEE
Confidence 9999999999999999988876 589999999999999999999999999999966 9999999999999999999999
Q ss_pred Eec
Q 001455 1071 WIP 1073 (1074)
Q Consensus 1071 Wdi 1073 (1074)
||.
T Consensus 425 Wdl 427 (499)
T KOG0281|consen 425 WDL 427 (499)
T ss_pred Eec
Confidence 996
No 31
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.93 E-value=1.5e-24 Score=255.19 Aligned_cols=200 Identities=18% Similarity=0.200 Sum_probs=167.5
Q ss_pred cCCCCCcEEEEEEe--CCEEEEEECCCcEEEEECCCCCeeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEccC
Q 001455 790 SHKCSGAVTALIYY--KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQ 867 (1074)
Q Consensus 790 ~~gH~~~VtsLafS--~~~LaSGs~DGtVrIWDl~t~~~~~i~tl~gH~~~VtsLafSpdg~~LaSGS~DGtIrIWDl~t 867 (1074)
..||+++|....|+ ..+|+++|.|++||+|.+.+..+ +-.++||..||+++.|+|.|-++||||.|++.++|....
T Consensus 447 L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~--~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~ 524 (707)
T KOG0263|consen 447 LYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSC--LVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDH 524 (707)
T ss_pred eecCCCceeeeeecccccceeeccCCcceeeeeccccee--EEEecCCCcceeeEEecCCceEEEecCCCceeeeeeccc
Confidence 34999999999999 55899999999999999999865 667789999999999999999999999999999999876
Q ss_pred CceEEEEEeccCCCeEE--EccCCCeEEEEecCCeEEEEeCCCceeeeecCCCeEEEEEeCCEEEEEECCCcEEEEEccC
Q 001455 868 RKLELIEVIATKEPIRK--LDTYGKTIFASTQGHRMKVIDSSRTLKDIYRSKGIKSMSVVQGKIYIGCMDSSIQELAVSN 945 (1074)
Q Consensus 868 g~~~~~~~~~h~~~V~s--~s~dg~~L~sgS~DgtI~VWDl~~~l~~l~~~~~V~sLa~sdgkLlaGs~DgsI~IwDl~t 945 (1074)
....+ .+.+|-+.|.| |.|+..++++|+.|.+ |++||+.+
T Consensus 525 ~~PlR-ifaghlsDV~cv~FHPNs~Y~aTGSsD~t-------------------------------------VRlWDv~~ 566 (707)
T KOG0263|consen 525 NKPLR-IFAGHLSDVDCVSFHPNSNYVATGSSDRT-------------------------------------VRLWDVST 566 (707)
T ss_pred CCchh-hhcccccccceEEECCcccccccCCCCce-------------------------------------EEEEEcCC
Confidence 54332 34455555543 4555556666655555 55555555
Q ss_pred CceeeeccccccccCCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEccCCCCCeEEEEEecCCCEEEEEEC
Q 001455 946 NVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSS 1025 (1074)
Q Consensus 946 g~~~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S~dDgtI~IWDl~t~~~i~~l~gH~~~VtsLafSPDG~~LaSGS~ 1025 (1074)
|... |.|.+|..+|.+++++|+|.++++++ +||.|++||+.++..+..+.+|.+.|.++.||.||..||+||.
T Consensus 567 G~~V------RiF~GH~~~V~al~~Sp~Gr~LaSg~-ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~ 639 (707)
T KOG0263|consen 567 GNSV------RIFTGHKGPVTALAFSPCGRYLASGD-EDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGA 639 (707)
T ss_pred CcEE------EEecCCCCceEEEEEcCCCceEeecc-cCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCC
Confidence 4443 44578999999999999999999988 8899999999999999999999999999999999999999999
Q ss_pred CCcEEEEECCC
Q 001455 1026 ASSLQIWLRGT 1036 (1074)
Q Consensus 1026 DGtIrIWDl~t 1036 (1074)
|++|++||+..
T Consensus 640 DnsV~lWD~~~ 650 (707)
T KOG0263|consen 640 DNSVRLWDLTK 650 (707)
T ss_pred CCeEEEEEchh
Confidence 99999999644
No 32
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.93 E-value=2.9e-24 Score=256.84 Aligned_cols=269 Identities=18% Similarity=0.283 Sum_probs=236.3
Q ss_pred CCCCcEEEEEEeCCEEEEEECCCcEEEEECCCCCeeEEEE-eccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEccCCce
Q 001455 792 KCSGAVTALIYYKGLLCSGFSDGSIKMWDIKKQSAMLVWD-VKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKL 870 (1074)
Q Consensus 792 gH~~~VtsLafS~~~LaSGs~DGtVrIWDl~t~~~~~i~t-l~gH~~~VtsLafSpdg~~LaSGS~DGtIrIWDl~tg~~ 870 (1074)
.|...|.+..|.++++++|+.|+++++||..++.. +.. +.||.+.|++++|...+..+++|+.|+++++||..+|.+
T Consensus 206 ~~~~~~~~~q~~~~~~~~~s~~~tl~~~~~~~~~~--i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C 283 (537)
T KOG0274|consen 206 TDDHVVLCLQLHDGFFKSGSDDSTLHLWDLNNGYL--ILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGEC 283 (537)
T ss_pred cCcchhhhheeecCeEEecCCCceeEEeecccceE--EEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcE
Confidence 36788999999999999999999999999998854 444 899999999999988788899999999999999999987
Q ss_pred EEEEEeccCCCeEEEccCCCeEEEEecCCeEEEEeCC--Cceeeee-cCCCeEEEEEeCCEEEEEECCCcEEEEEccCCc
Q 001455 871 ELIEVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSS--RTLKDIY-RSKGIKSMSVVQGKIYIGCMDSSIQELAVSNNV 947 (1074)
Q Consensus 871 ~~~~~~~h~~~V~s~s~dg~~L~sgS~DgtI~VWDl~--~~l~~l~-~~~~V~sLa~sdgkLlaGs~DgsI~IwDl~tg~ 947 (1074)
... ..+|.+.|.++.-.+..+++|+.|.+|++|++. ..+..+. +...|.++...++.+++|+.|++|.+||+.+++
T Consensus 284 ~~~-l~gh~stv~~~~~~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~~~~lvsgs~d~~v~VW~~~~~~ 362 (537)
T KOG0274|consen 284 THS-LQGHTSSVRCLTIDPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLDEPLLVSGSYDGTVKVWDPRTGK 362 (537)
T ss_pred EEE-ecCCCceEEEEEccCceEeeccCCceEEEEeccCcceEEEeccccccEEEEEecCCEEEEEecCceEEEEEhhhce
Confidence 764 458999999999999999999999999999998 4555566 566799999998899999999999999999866
Q ss_pred eeeeccccccccCCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCC-CeEEEccCCCCCeEEEEEecCCCEEEEEECC
Q 001455 948 EREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRK-PQISIAPEKGTTIQAMAVVEDFIYLNYNSSA 1026 (1074)
Q Consensus 948 ~~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S~dDgtI~IWDl~t~-~~i~~l~gH~~~VtsLafSPDG~~LaSGS~D 1026 (1074)
.. +.+.+|...|.++.+.+. ..+++++ -|++|++||+.++ +++.++.+|..-|..+.+ .+++|++++.|
T Consensus 363 cl------~sl~gH~~~V~sl~~~~~-~~~~Sgs-~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD 432 (537)
T KOG0274|consen 363 CL------KSLSGHTGRVYSLIVDSE-NRLLSGS-LDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL--RDNFLVSSSAD 432 (537)
T ss_pred ee------eeecCCcceEEEEEecCc-ceEEeee-eccceEeecCCchhhhhhhhcCCccccccccc--ccceeEecccc
Confidence 54 455789999999988875 5555555 5689999999999 999999999998866554 57899999999
Q ss_pred CcEEEEECCCCcEEEEEeC-C-CCeEEEEEcCCEEEEEECCCcEEEEec
Q 001455 1027 SSLQIWLRGTQQKVGRISA-G-SKITSLLTANDIVLCGTETGLIKGWIP 1073 (1074)
Q Consensus 1027 GtIrIWDl~tg~~l~tL~~-h-s~VtsLa~dg~~LaSGs~DG~IrIWdi 1073 (1074)
|+|++||..++++++++.+ | +.|+++++....+++++.||++++||+
T Consensus 433 ~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~~~~il~s~~~~~~~l~dl 481 (537)
T KOG0274|consen 433 GTIKLWDAEEGECLRTLEGRHVGGVSALALGKEEILCSSDDGSVKLWDL 481 (537)
T ss_pred ccEEEeecccCceeeeeccCCcccEEEeecCcceEEEEecCCeeEEEec
Confidence 9999999999999999999 4 669988887778999999999999985
No 33
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.93 E-value=2e-23 Score=235.56 Aligned_cols=280 Identities=18% Similarity=0.203 Sum_probs=204.5
Q ss_pred CCCCCcEEEEEEe--CCEEEEEECCCcEEEEECCCCCeeEEEEec---cCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEc
Q 001455 791 HKCSGAVTALIYY--KGLLCSGFSDGSIKMWDIKKQSAMLVWDVK---EHRKAVTSFSLFEPGESLLSGSADKTIGVWQM 865 (1074)
Q Consensus 791 ~gH~~~VtsLafS--~~~LaSGs~DGtVrIWDl~t~~~~~i~tl~---gH~~~VtsLafSpdg~~LaSGS~DGtIrIWDl 865 (1074)
..|..-|.|+.|+ +.++||.+.||+|.+||-.+++. +..+. +|++.|.+++|+||+..++|+|.|++++|||+
T Consensus 187 r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~--vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdV 264 (603)
T KOG0318|consen 187 REHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEK--VGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDV 264 (603)
T ss_pred cccccceeeEEECCCCCeEEEecCCccEEEEcCCCccE--EEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEe
Confidence 3799999999999 55899999999999999999864 67776 89999999999999999999999999999999
Q ss_pred cCCceEEEEE------------------------------------------eccCCCeEE--EccCCCeEEEEecCCeE
Q 001455 866 VQRKLELIEV------------------------------------------IATKEPIRK--LDTYGKTIFASTQGHRM 901 (1074)
Q Consensus 866 ~tg~~~~~~~------------------------------------------~~h~~~V~s--~s~dg~~L~sgS~DgtI 901 (1074)
.++++..... .+|...|++ +++++.+|++|+.||.|
T Consensus 265 s~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I 344 (603)
T KOG0318|consen 265 STNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHI 344 (603)
T ss_pred eccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceE
Confidence 8876543222 234445554 34666677777777777
Q ss_pred EEEeCCCc-eeeeec--CC-CeEEEEEe-CCEEEEEECCCcEEEEEccCCceeee---cc--------------------
Q 001455 902 KVIDSSRT-LKDIYR--SK-GIKSMSVV-QGKIYIGCMDSSIQELAVSNNVEREI---KA-------------------- 953 (1074)
Q Consensus 902 ~VWDl~~~-l~~l~~--~~-~V~sLa~s-dgkLlaGs~DgsI~IwDl~tg~~~~i---~~-------------------- 953 (1074)
.-||.... ...+.+ +. .|.+++.. .+.+++.+.|.++++.++..+..... +.
T Consensus 345 ~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~ 424 (603)
T KOG0318|consen 345 NSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVAC 424 (603)
T ss_pred EEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEe
Confidence 77776632 222221 22 26666665 36677777777777765532211000 00
Q ss_pred --ccccccCC--------CCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCe--EEEccCCCCCeEEEEEecCCCEEE
Q 001455 954 --PFKSWRLQ--------SKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQ--ISIAPEKGTTIQAMAVVEDFIYLN 1021 (1074)
Q Consensus 954 --~~r~~~~h--------~~~I~sL~~spd~i~las~S~dDgtI~IWDl~t~~~--i~~l~gH~~~VtsLafSPDG~~La 1021 (1074)
....++.+ .....+++++|++...+.++ +|+.+++|.+..+.. ......|.++|++++||||+.|||
T Consensus 425 ~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG-~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla 503 (603)
T KOG0318|consen 425 ISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGG-QDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLA 503 (603)
T ss_pred cCcEEEEecCCcceeeccccccceEEEcCCCCEEEEec-ccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEE
Confidence 00001101 22345677888888888776 888999999887553 334567999999999999999999
Q ss_pred EEECCCcEEEEECCCCcEEE-EEeCC-CCeEEEEEcCC--EEEEEECCCcEEEEec
Q 001455 1022 YNSSASSLQIWLRGTQQKVG-RISAG-SKITSLLTAND--IVLCGTETGLIKGWIP 1073 (1074)
Q Consensus 1022 SGS~DGtIrIWDl~tg~~l~-tL~~h-s~VtsLa~dg~--~LaSGs~DG~IrIWdi 1073 (1074)
+|...+.|.+||+.+.+... .+.-| .+|+|++|+++ ++|+|+-|..|.||++
T Consensus 504 ~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv 559 (603)
T KOG0318|consen 504 AGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSV 559 (603)
T ss_pred EeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEc
Confidence 99999999999999887733 33336 56999999854 9999999999999985
No 34
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.93 E-value=1.6e-23 Score=228.21 Aligned_cols=277 Identities=14% Similarity=0.116 Sum_probs=213.7
Q ss_pred CCCCcEEEEEEe--CCEEEEEECCCcEEEEECCCCCeeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEccCCc
Q 001455 792 KCSGAVTALIYY--KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRK 869 (1074)
Q Consensus 792 gH~~~VtsLafS--~~~LaSGs~DGtVrIWDl~t~~~~~i~tl~gH~~~VtsLafSpdg~~LaSGS~DGtIrIWDl~tg~ 869 (1074)
.|+++|.+++.+ .++++|||.|....+|++.++. ....+.+|++.|+++.|+.+|.+||||+.+|.|+||+..++.
T Consensus 62 ~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge--~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~ 139 (399)
T KOG0296|consen 62 KHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGE--FAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGG 139 (399)
T ss_pred hcCCceEEEEeCCCCceEEecCCCceEEEEEccCCc--ceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCc
Confidence 899999999999 4589999999999999999986 478899999999999999999999999999999999999998
Q ss_pred eEEEEEeccCCCeE-EEccCCCeEEEEecCCeEEEEeCCC--ceeeeec-CCCeEEEEE-eCCE-EEEEECCCcEEEEEc
Q 001455 870 LELIEVIATKEPIR-KLDTYGKTIFASTQGHRMKVIDSSR--TLKDIYR-SKGIKSMSV-VQGK-IYIGCMDSSIQELAV 943 (1074)
Q Consensus 870 ~~~~~~~~h~~~V~-s~s~dg~~L~sgS~DgtI~VWDl~~--~l~~l~~-~~~V~sLa~-sdgk-LlaGs~DgsI~IwDl 943 (1074)
..+........-++ .+.|.+..+++|+.||.+.+|.+.. ..+.+.+ ..++++=.| ++|+ +++|..||+|++||.
T Consensus 140 ~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ 219 (399)
T KOG0296|consen 140 EQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNP 219 (399)
T ss_pred eEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEec
Confidence 76655433333333 5678888999999999999999984 3444444 335676667 4777 778999999999999
Q ss_pred cCCceeeeccccc---------------cccCCCC---------------------------------CeEEEEEcCCce
Q 001455 944 SNNVEREIKAPFK---------------SWRLQSK---------------------------------PINSLVVYKDWL 975 (1074)
Q Consensus 944 ~tg~~~~i~~~~r---------------~~~~h~~---------------------------------~I~sL~~spd~i 975 (1074)
.++.......... .+.+... .|.++.++..-.
T Consensus 220 ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lp 299 (399)
T KOG0296|consen 220 KTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLP 299 (399)
T ss_pred CCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccc
Confidence 9986533211000 0000000 000111111111
Q ss_pred EEEEEecCCCeEEEEECCCCCeEEEccCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCC-eEEEEE
Q 001455 976 YSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAGSK-ITSLLT 1054 (1074)
Q Consensus 976 ~las~S~dDgtI~IWDl~t~~~i~~l~gH~~~VtsLafSPDG~~LaSGS~DGtIrIWDl~tg~~l~tL~~hs~-VtsLa~ 1054 (1074)
..+++ .-||+|.|||.......+.+ .|...|+.+.|-+ ..+|++++.||.|+.||.++|+++.++.+|.. |.+++.
T Consensus 300 L~A~G-~vdG~i~iyD~a~~~~R~~c-~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~l 376 (399)
T KOG0296|consen 300 LAACG-SVDGTIAIYDLAASTLRHIC-EHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFAL 376 (399)
T ss_pred hhhcc-cccceEEEEecccchhheec-cCCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEEecCchheeEEEE
Confidence 22333 36789999999887755444 6888899999999 88999999999999999999999999999954 998775
Q ss_pred --cCCEEEEEECCCcEEEEec
Q 001455 1055 --ANDIVLCGTETGLIKGWIP 1073 (1074)
Q Consensus 1055 --dg~~LaSGs~DG~IrIWdi 1073 (1074)
+.+.++++|.|++.+||++
T Consensus 377 s~~~~~vvT~s~D~~a~VF~v 397 (399)
T KOG0296|consen 377 SPQKRLVVTVSDDNTALVFEV 397 (399)
T ss_pred cCCCcEEEEecCCCeEEEEec
Confidence 4779999999999999974
No 35
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.93 E-value=5.1e-24 Score=225.54 Aligned_cols=240 Identities=16% Similarity=0.189 Sum_probs=201.4
Q ss_pred EEEEeccCCCCEEEEEEcCCCC-EEEEEeCCCeEEEEEccCCce----EEEEEeccCCCeEE--EccCCCeEEEEecCCe
Q 001455 828 LVWDVKEHRKAVTSFSLFEPGE-SLLSGSADKTIGVWQMVQRKL----ELIEVIATKEPIRK--LDTYGKTIFASTQGHR 900 (1074)
Q Consensus 828 ~i~tl~gH~~~VtsLafSpdg~-~LaSGS~DGtIrIWDl~tg~~----~~~~~~~h~~~V~s--~s~dg~~L~sgS~Dgt 900 (1074)
...++++|++.|+.++..+.+. .+++++.|.++.+|++..... ....+.+|...|.. ++++|++.+++++|++
T Consensus 7 l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~ 86 (315)
T KOG0279|consen 7 LRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGT 86 (315)
T ss_pred eeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccce
Confidence 4567899999999999998754 488999999999999865322 23455678887764 6899999999999999
Q ss_pred EEEEeCCC--ceeeeec-CCCeEEEEEe--CCEEEEEECCCcEEEEEccCCceeeeccccccccCCCCCeEEEEEcCC--
Q 001455 901 MKVIDSSR--TLKDIYR-SKGIKSMSVV--QGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKD-- 973 (1074)
Q Consensus 901 I~VWDl~~--~l~~l~~-~~~V~sLa~s--dgkLlaGs~DgsI~IwDl~tg~~~~i~~~~r~~~~h~~~I~sL~~spd-- 973 (1074)
+++||+.. ..+.+.+ ...|.+++|+ +.++++|+.|.+|.+|++-++...++.. ..+...|.++.|+|+
T Consensus 87 lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~-----~~~~~WVscvrfsP~~~ 161 (315)
T KOG0279|consen 87 LRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHE-----DSHREWVSCVRFSPNES 161 (315)
T ss_pred EEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEec-----CCCcCcEEEEEEcCCCC
Confidence 99999984 3333443 4569999997 5569999999999999998866554421 123678999999998
Q ss_pred ceEEEEEecCCCeEEEEECCCCCeEEEccCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCeEEEE
Q 001455 974 WLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAGSKITSLL 1053 (1074)
Q Consensus 974 ~i~las~S~dDgtI~IWDl~t~~~i~~l~gH~~~VtsLafSPDG~~LaSGS~DGtIrIWDl~tg~~l~tL~~hs~VtsLa 1053 (1074)
..++++++ .|+++++||+++.+....+.||.+.++.+++||||...++|+.||.+.+||++.++.+.++.+...|.+++
T Consensus 162 ~p~Ivs~s-~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a~~~v~sl~ 240 (315)
T KOG0279|consen 162 NPIIVSAS-WDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEAFDIVNSLC 240 (315)
T ss_pred CcEEEEcc-CCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccCCCeEeeEE
Confidence 67777776 89999999999999999999999999999999999999999999999999999999999999888999999
Q ss_pred EcCC-EEEEEECCCcEEEEec
Q 001455 1054 TAND-IVLCGTETGLIKGWIP 1073 (1074)
Q Consensus 1054 ~dg~-~LaSGs~DG~IrIWdi 1073 (1074)
|.++ +.+++..+..|+|||.
T Consensus 241 fspnrywL~~at~~sIkIwdl 261 (315)
T KOG0279|consen 241 FSPNRYWLCAATATSIKIWDL 261 (315)
T ss_pred ecCCceeEeeccCCceEEEec
Confidence 9966 5556666667999984
No 36
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.93 E-value=6.1e-24 Score=223.03 Aligned_cols=274 Identities=14% Similarity=0.142 Sum_probs=232.4
Q ss_pred CCCCCcEEEEEEe--CCEEEEEECCCcEEEEECCCCCeeEEEEeccCCCCEEEEEEcCCCC-EEEEEeCCCeEEEEEccC
Q 001455 791 HKCSGAVTALIYY--KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGE-SLLSGSADKTIGVWQMVQ 867 (1074)
Q Consensus 791 ~gH~~~VtsLafS--~~~LaSGs~DGtVrIWDl~t~~~~~i~tl~gH~~~VtsLafSpdg~-~LaSGS~DGtIrIWDl~t 867 (1074)
++|...|.+|+|+ +..+++|+.|+++++|+++..+...-....+|.+.|-.++|+|... .+++++.|++|++||++.
T Consensus 17 ~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~ 96 (313)
T KOG1407|consen 17 QGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRS 96 (313)
T ss_pred hhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEecc
Confidence 4889999999999 5589999999999999999775544456679999999999997654 589999999999999999
Q ss_pred CceEEEEEeccCCCeEEEccCCCeEEEEecCCeEEEEeCCC--ceeeeecCCCeEEEEEe-CC-EEEEEECCCcEEEEEc
Q 001455 868 RKLELIEVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSSR--TLKDIYRSKGIKSMSVV-QG-KIYIGCMDSSIQELAV 943 (1074)
Q Consensus 868 g~~~~~~~~~h~~~V~s~s~dg~~L~sgS~DgtI~VWDl~~--~l~~l~~~~~V~sLa~s-dg-kLlaGs~DgsI~IwDl 943 (1074)
+++.........+-..+++|+|.++++++.|..|.+.|.+. ..........+..++|. ++ .++.....|.|.|...
T Consensus 97 ~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsy 176 (313)
T KOG1407|consen 97 GKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSY 176 (313)
T ss_pred CcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEEEec
Confidence 99877666666666678999999999999999999999873 33333334557777786 44 4555677799999988
Q ss_pred cCCceeeeccccccccCCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEccCCCCCeEEEEEecCCCEEEEE
Q 001455 944 SNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYN 1023 (1074)
Q Consensus 944 ~tg~~~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S~dDgtI~IWDl~t~~~i~~l~gH~~~VtsLafSPDG~~LaSG 1023 (1074)
.. ..|+..++.|.....++.|.|+|.++++++ .|..+.+||++.--+.+.+..+..+|+.+.||.||++||+|
T Consensus 177 ps------Lkpv~si~AH~snCicI~f~p~GryfA~Gs-ADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASa 249 (313)
T KOG1407|consen 177 PS------LKPVQSIKAHPSNCICIEFDPDGRYFATGS-ADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASA 249 (313)
T ss_pred cc------cccccccccCCcceEEEEECCCCceEeecc-ccceeeccChhHhhhheeeccccCceEEEEeccCcceeecc
Confidence 75 345567788999999999999999999988 78899999999999999999999999999999999999999
Q ss_pred ECCCcEEEEECCCCcEEEEEeCCCCeEEEEEcCC--EEEEEECC---------CcEEEE
Q 001455 1024 SSASSLQIWLRGTQQKVGRISAGSKITSLLTAND--IVLCGTET---------GLIKGW 1071 (1074)
Q Consensus 1024 S~DGtIrIWDl~tg~~l~tL~~hs~VtsLa~dg~--~LaSGs~D---------G~IrIW 1071 (1074)
|+|..|-|=++++|..+..++..++...++|+++ .||.+++| |.|++|
T Consensus 250 SEDh~IDIA~vetGd~~~eI~~~~~t~tVAWHPk~~LLAyA~ddk~~d~~reag~vKiF 308 (313)
T KOG1407|consen 250 SEDHFIDIAEVETGDRVWEIPCEGPTFTVAWHPKRPLLAYACDDKDGDSNREAGTVKIF 308 (313)
T ss_pred CccceEEeEecccCCeEEEeeccCCceeEEecCCCceeeEEecCCCCccccccceeEEe
Confidence 9999999999999999999999999999999977 66666654 567766
No 37
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.93 E-value=3.3e-25 Score=244.21 Aligned_cols=273 Identities=17% Similarity=0.221 Sum_probs=232.1
Q ss_pred CCCCCcEEEEEEe-C-CEEEEEECCCcEEEEECCCCCeeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEccCC
Q 001455 791 HKCSGAVTALIYY-K-GLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQR 868 (1074)
Q Consensus 791 ~gH~~~VtsLafS-~-~~LaSGs~DGtVrIWDl~t~~~~~i~tl~gH~~~VtsLafSpdg~~LaSGS~DGtIrIWDl~tg 868 (1074)
+.|.+.|..+.|- + +.|++|+.|..|++|++...+...+.++.|..++|+++.|.++++++++++.|+.+++|++...
T Consensus 172 d~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~ 251 (459)
T KOG0288|consen 172 DAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSL 251 (459)
T ss_pred hccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccch
Confidence 3789999999999 4 6899999999999999998877778899999999999999999999999999999999999988
Q ss_pred ceEEEEEeccCCCeEEEc--cCCCeEEEEecCCeEEEEeCC--CceeeeecCCCeEEEEEeCCEEEEEECCCcEEEEEcc
Q 001455 869 KLELIEVIATKEPIRKLD--TYGKTIFASTQGHRMKVIDSS--RTLKDIYRSKGIKSMSVVQGKIYIGCMDSSIQELAVS 944 (1074)
Q Consensus 869 ~~~~~~~~~h~~~V~s~s--~dg~~L~sgS~DgtI~VWDl~--~~l~~l~~~~~V~sLa~sdgkLlaGs~DgsI~IwDl~ 944 (1074)
+... ...+|.+.|++.. .....+++|+.|.+|+.||+. .+.++......+..|......+++|..|+.|++||.+
T Consensus 252 r~~~-TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~~~~~~SgH~DkkvRfwD~R 330 (459)
T KOG0288|consen 252 RLRH-TLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCSISDVISGHFDKKVRFWDIR 330 (459)
T ss_pred hhhh-hhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccccccccceEecceeeeecccccceEEEecc
Confidence 7544 4556999999853 334449999999999999998 4666677777777777765557789999999999998
Q ss_pred CCceeeeccccccccCCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEccCCC----CCeEEEEEecCCCEE
Q 001455 945 NNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKG----TTIQAMAVVEDFIYL 1020 (1074)
Q Consensus 945 tg~~~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S~dDgtI~IWDl~t~~~i~~l~gH~----~~VtsLafSPDG~~L 1020 (1074)
++...... .. ++.|+++..+.++..+.+++ .|.++.+.|.++....+.+...+ ...+.+.|||++.|+
T Consensus 331 s~~~~~sv------~~-gg~vtSl~ls~~g~~lLsss-RDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~Yv 402 (459)
T KOG0288|consen 331 SADKTRSV------PL-GGRVTSLDLSMDGLELLSSS-RDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYV 402 (459)
T ss_pred CCceeeEe------ec-CcceeeEeeccCCeEEeeec-CCCceeeeecccccEEEEeeccccccccccceeEECCCCcee
Confidence 86654332 22 45999999999999999887 45689999999998887775432 358899999999999
Q ss_pred EEEECCCcEEEEECCCCcEEEEEeCC--C-CeEEEEEc--CCEEEEEECCCcEEEEe
Q 001455 1021 NYNSSASSLQIWLRGTQQKVGRISAG--S-KITSLLTA--NDIVLCGTETGLIKGWI 1072 (1074)
Q Consensus 1021 aSGS~DGtIrIWDl~tg~~l~tL~~h--s-~VtsLa~d--g~~LaSGs~DG~IrIWd 1072 (1074)
++||.||.|+||++.++++...++.. . .|++++|+ |..+++++.++.+.+|.
T Consensus 403 aAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 403 AAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred eeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 99999999999999999999888865 2 49999997 77999999999999994
No 38
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.93 E-value=6.6e-24 Score=246.81 Aligned_cols=269 Identities=13% Similarity=0.172 Sum_probs=232.6
Q ss_pred CCCCcEEEEEEe-CCEEEEEECCCcEEEEECCCCCeeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEccCCce
Q 001455 792 KCSGAVTALIYY-KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKL 870 (1074)
Q Consensus 792 gH~~~VtsLafS-~~~LaSGs~DGtVrIWDl~t~~~~~i~tl~gH~~~VtsLafSpdg~~LaSGS~DGtIrIWDl~tg~~ 870 (1074)
||...|.+++++ ++.++..+..++++||+.++.++ ++++.. +.+.+..|.|.+.++++|...|.+.++|+.+...
T Consensus 371 GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kc--iRTi~~--~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l 446 (888)
T KOG0306|consen 371 GHRSDVRSLCVSSDSILLASGAGESIKIWNRDTLKC--IRTITC--GYILASKFVPGDRYIVLGTKNGELQVFDLASASL 446 (888)
T ss_pred cchhheeEEEeecCceeeeecCCCcEEEEEccCcce--eEEecc--ccEEEEEecCCCceEEEeccCCceEEEEeehhhh
Confidence 899999999999 66666666778999999999866 777743 4899999999999999999999999999988764
Q ss_pred EEEEEeccCCCeEEE--ccCCCeEEEEecCCeEEEEeCC---C------c------eeeeecCCCeEEEEEe-CCEEEE-
Q 001455 871 ELIEVIATKEPIRKL--DTYGKTIFASTQGHRMKVIDSS---R------T------LKDIYRSKGIKSMSVV-QGKIYI- 931 (1074)
Q Consensus 871 ~~~~~~~h~~~V~s~--s~dg~~L~sgS~DgtI~VWDl~---~------~------l~~l~~~~~V~sLa~s-dgkLla- 931 (1074)
.- ....|.+.++++ .|++..+++|+.|.+|++||.. . . ..++.-...|.|+.++ ||++++
T Consensus 447 ~E-ti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaV 525 (888)
T KOG0306|consen 447 VE-TIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAV 525 (888)
T ss_pred hh-hhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEE
Confidence 33 344899999875 6999999999999999999965 1 1 1223335678999997 898666
Q ss_pred EECCCcEEEEEccCCceeeeccccccccCCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEccCCCCCeEEE
Q 001455 932 GCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAM 1011 (1074)
Q Consensus 932 Gs~DgsI~IwDl~tg~~~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S~dDgtI~IWDl~t~~~i~~l~gH~~~VtsL 1011 (1074)
+--|++|++|-+.+-+.. -.+.+|.-||.++..+||+..+++++ .|++|++|-++-|.+.+.+.+|.+.|.++
T Consensus 526 sLLdnTVkVyflDtlKFf------lsLYGHkLPV~smDIS~DSklivTgS-ADKnVKiWGLdFGDCHKS~fAHdDSvm~V 598 (888)
T KOG0306|consen 526 SLLDNTVKVYFLDTLKFF------LSLYGHKLPVLSMDISPDSKLIVTGS-ADKNVKIWGLDFGDCHKSFFAHDDSVMSV 598 (888)
T ss_pred EeccCeEEEEEecceeee------eeecccccceeEEeccCCcCeEEecc-CCCceEEeccccchhhhhhhcccCceeEE
Confidence 778999999999883321 34578999999999999999999988 78999999999999999999999999999
Q ss_pred EEecCCCEEEEEECCCcEEEEECCCCcEEEEEeCC-CCeEEEE--EcCCEEEEEECCCcEEEEe
Q 001455 1012 AVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAG-SKITSLL--TANDIVLCGTETGLIKGWI 1072 (1074)
Q Consensus 1012 afSPDG~~LaSGS~DGtIrIWDl~tg~~l~tL~~h-s~VtsLa--~dg~~LaSGs~DG~IrIWd 1072 (1074)
.|-|+..++.|+|.|+.|+-||-.+.+.+.++.+| ..|+|++ ++|.+++|+|.|.+|++|.
T Consensus 599 ~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE 662 (888)
T KOG0306|consen 599 QFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWE 662 (888)
T ss_pred EEcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeee
Confidence 99999999999999999999999999999999999 4599865 6788999999999999996
No 39
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.92 E-value=2.6e-23 Score=234.53 Aligned_cols=281 Identities=17% Similarity=0.220 Sum_probs=222.5
Q ss_pred eecCCCCCcEEEEEEe-C-CEEEEEECCCcEEEEECCCCCee--------------------------------------
Q 001455 788 EASHKCSGAVTALIYY-K-GLLCSGFSDGSIKMWDIKKQSAM-------------------------------------- 827 (1074)
Q Consensus 788 e~~~gH~~~VtsLafS-~-~~LaSGs~DGtVrIWDl~t~~~~-------------------------------------- 827 (1074)
+...+|.+.|.+++|+ + ..++|++.|.+++|||+.+.+..
T Consensus 229 ~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~ 308 (603)
T KOG0318|consen 229 EDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPS 308 (603)
T ss_pred cCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEeccc
Confidence 3345899999999999 4 37999999999999999765431
Q ss_pred ---EEEEeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEccCCceEEEEEeccCCCeEEEccCC-CeEEEEecCCeEEE
Q 001455 828 ---LVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATKEPIRKLDTYG-KTIFASTQGHRMKV 903 (1074)
Q Consensus 828 ---~i~tl~gH~~~VtsLafSpdg~~LaSGS~DGtIrIWDl~tg~~~~~~~~~h~~~V~s~s~dg-~~L~sgS~DgtI~V 903 (1074)
....+.||...|+++..+|++++|+||+.||.|.-||..+|..-...-..|...|.++.... ..+++.++|.++++
T Consensus 309 d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~ 388 (603)
T KOG0318|consen 309 DPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRV 388 (603)
T ss_pred CCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEE
Confidence 22445699999999999999999999999999999999988755444467999999987666 78999999999999
Q ss_pred EeCCC-------------cee--------------------eeecC---------CCeEEEEEe-CCE-EEEEECCCcEE
Q 001455 904 IDSSR-------------TLK--------------------DIYRS---------KGIKSMSVV-QGK-IYIGCMDSSIQ 939 (1074)
Q Consensus 904 WDl~~-------------~l~--------------------~l~~~---------~~V~sLa~s-dgk-LlaGs~DgsI~ 939 (1074)
.++.. +.+ .+... -...+++++ ++. ++.|+.|+.|+
T Consensus 389 ~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvh 468 (603)
T KOG0318|consen 389 ISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVH 468 (603)
T ss_pred EecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEE
Confidence 87630 000 01101 113456665 555 55699999999
Q ss_pred EEEccCCceeeeccccccccCCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEc-cCCCCCeEEEEEecCCC
Q 001455 940 ELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIA-PEKGTTIQAMAVVEDFI 1018 (1074)
Q Consensus 940 IwDl~tg~~~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S~dDgtI~IWDl~t~~~i~~l-~gH~~~VtsLafSPDG~ 1018 (1074)
+|.+..+..... .....|..+|+.++++|++.|++++. ..+.+.+||..++...... .-|...|.+++|+|+..
T Consensus 469 vysl~g~~l~ee----~~~~~h~a~iT~vaySpd~~yla~~D-a~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~ 543 (603)
T KOG0318|consen 469 VYSLSGDELKEE----AKLLEHRAAITDVAYSPDGAYLAAGD-ASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNK 543 (603)
T ss_pred EEEecCCcccce----eeeecccCCceEEEECCCCcEEEEec-cCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCce
Confidence 999998664332 23356789999999999999999886 5578999999887764332 23999999999999999
Q ss_pred EEEEEECCCcEEEEECCCCcEEEEEe-CC-CCeEEEEEc-CCEEEEEECCCcEEEEec
Q 001455 1019 YLNYNSSASSLQIWLRGTQQKVGRIS-AG-SKITSLLTA-NDIVLCGTETGLIKGWIP 1073 (1074)
Q Consensus 1019 ~LaSGS~DGtIrIWDl~tg~~l~tL~-~h-s~VtsLa~d-g~~LaSGs~DG~IrIWdi 1073 (1074)
++||||-|..|.||+++.....-.++ .| ..|+.+.|- ...+++.|.|..|++|++
T Consensus 544 ~vATGSlDt~Viiysv~kP~~~i~iknAH~~gVn~v~wlde~tvvSsG~Da~iK~W~v 601 (603)
T KOG0318|consen 544 LVATGSLDTNVIIYSVKKPAKHIIIKNAHLGGVNSVAWLDESTVVSSGQDANIKVWNV 601 (603)
T ss_pred EEEeccccceEEEEEccChhhheEeccccccCceeEEEecCceEEeccCcceeEEecc
Confidence 99999999999999987765544444 45 339999985 779999999999999986
No 40
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=5.6e-24 Score=249.96 Aligned_cols=275 Identities=13% Similarity=0.229 Sum_probs=226.4
Q ss_pred CCCcEEEEEEe--CCEEEEEECCCcEEEEECCCCCeeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEccCCce
Q 001455 793 CSGAVTALIYY--KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKL 870 (1074)
Q Consensus 793 H~~~VtsLafS--~~~LaSGs~DGtVrIWDl~t~~~~~i~tl~gH~~~VtsLafSpdg~~LaSGS~DGtIrIWDl~tg~~ 870 (1074)
-+..|..++|+ ..+++++-..|.|.+||.+-+. ++..|.+|.++|..++|+|+++.++|||+|..|+||+..+.++
T Consensus 8 kSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~t--li~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrc 85 (1202)
T KOG0292|consen 8 KSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGT--LIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRC 85 (1202)
T ss_pred ccccccceecCCCCCEEEEeecCceeeeehhhhhh--HHhhhhccCCccceeeecCCCCeEEecCCccEEEEEeccccee
Confidence 36788999999 3489999999999999999874 5889999999999999999999999999999999999998876
Q ss_pred EEEEEeccCCCeEEEccCCC--eEEEEecCCeEEEEeCC--CceeeeecC-CCeEEEEEe--CCEEEEEECCCcEEEEEc
Q 001455 871 ELIEVIATKEPIRKLDTYGK--TIFASTQGHRMKVIDSS--RTLKDIYRS-KGIKSMSVV--QGKIYIGCMDSSIQELAV 943 (1074)
Q Consensus 871 ~~~~~~~h~~~V~s~s~dg~--~L~sgS~DgtI~VWDl~--~~l~~l~~~-~~V~sLa~s--dgkLlaGs~DgsI~IwDl 943 (1074)
.. ...+|-+.|.....|.. .|+++|.|.+|+||++. .++..+.++ +.|.|..|. +..+++++-|.+|++||+
T Consensus 86 lf-tL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDi 164 (1202)
T KOG0292|consen 86 LF-TLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDI 164 (1202)
T ss_pred hh-hhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEee
Confidence 54 45689999988665554 89999999999999987 566666654 569999994 667889999999999999
Q ss_pred cCCceeeecc-----------------------ccccccCCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCC--eE
Q 001455 944 SNNVEREIKA-----------------------PFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKP--QI 998 (1074)
Q Consensus 944 ~tg~~~~i~~-----------------------~~r~~~~h~~~I~sL~~spd~i~las~S~dDgtI~IWDl~t~~--~i 998 (1074)
..-+.....+ ....+.+|...|+..+|||....+++++ +|..|++|..+..+ .+
T Consensus 165 sGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~-DDRqVKlWrmnetKaWEv 243 (1202)
T KOG0292|consen 165 SGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGA-DDRQVKLWRMNETKAWEV 243 (1202)
T ss_pred cchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecC-CcceeeEEEeccccceee
Confidence 6532211111 1134578899999999999999889887 99999999976544 35
Q ss_pred EEccCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCcEEEEEeCC-CCeEEEEEc--CCEEEEEECCCcEEEEe
Q 001455 999 SIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAG-SKITSLLTA--NDIVLCGTETGLIKGWI 1072 (1074)
Q Consensus 999 ~~l~gH~~~VtsLafSPDG~~LaSGS~DGtIrIWDl~tg~~l~tL~~h-s~VtsLa~d--g~~LaSGs~DG~IrIWd 1072 (1074)
.+..||.++|.++-|+|....|+|.|+|++|+|||+...+.++++... ++-+.++-+ .+.+++|.+.| +.||.
T Consensus 244 DtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAgHDsG-m~VFk 319 (1202)
T KOG0292|consen 244 DTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAGHDSG-MIVFK 319 (1202)
T ss_pred hhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCcceeeeecCCc-eEEEE
Confidence 678899999999999999999999999999999999999999999754 567776655 55666665444 55654
No 41
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.92 E-value=1.1e-24 Score=227.09 Aligned_cols=270 Identities=18% Similarity=0.210 Sum_probs=228.3
Q ss_pred cCCCCCcEEEEEEe----CC-EEEEEECCCcEEEEECCCCCeeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 001455 790 SHKCSGAVTALIYY----KG-LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQ 864 (1074)
Q Consensus 790 ~~gH~~~VtsLafS----~~-~LaSGs~DGtVrIWDl~t~~~~~i~tl~gH~~~VtsLafSpdg~~LaSGS~DGtIrIWD 864 (1074)
-+||+.+|..++|+ ++ +|++++.||.=.+-+-+++.. +.+|.||+++|++...+.+-..-++++.|-+-++||
T Consensus 10 c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdw--igtfeghkgavw~~~l~~na~~aasaaadftakvw~ 87 (334)
T KOG0278|consen 10 CHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDW--IGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWD 87 (334)
T ss_pred EcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCc--EEeeeccCcceeeeecCchhhhhhhhcccchhhhhh
Confidence 35999999999999 45 589999999999999999876 899999999999999998888899999999999999
Q ss_pred ccCCceEEEEEeccCCCeE--EEccCCCeEEEEecCCeEEEEeCCCc---eeeeec-CCCeEEEEEe--CCEEEEEECCC
Q 001455 865 MVQRKLELIEVIATKEPIR--KLDTYGKTIFASTQGHRMKVIDSSRT---LKDIYR-SKGIKSMSVV--QGKIYIGCMDS 936 (1074)
Q Consensus 865 l~tg~~~~~~~~~h~~~V~--s~s~dg~~L~sgS~DgtI~VWDl~~~---l~~l~~-~~~V~sLa~s--dgkLlaGs~Dg 936 (1074)
.-+|...... .|+..|. .|+.+.+++++|+.+..++|||+++. ...+.+ ..+|+.+.|- +..+++...|+
T Consensus 88 a~tgdelhsf--~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~ 165 (334)
T KOG0278|consen 88 AVTGDELHSF--EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDK 165 (334)
T ss_pred hhhhhhhhhh--hhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCC
Confidence 9998765433 4555554 58899999999999999999999843 333333 5679999995 66688899999
Q ss_pred cEEEEEccCCceeeeccccccccCCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEccCCCCCeEEEEEecC
Q 001455 937 SIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVED 1016 (1074)
Q Consensus 937 sI~IwDl~tg~~~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S~dDgtI~IWDl~t~~~i~~l~gH~~~VtsLafSPD 1016 (1074)
+||+||.+++...... ....+++++.++++|.++... .++.|++||..+...++.+.- ...|.+...+|+
T Consensus 166 tVRLWD~rTgt~v~sL-------~~~s~VtSlEvs~dG~ilTia--~gssV~Fwdaksf~~lKs~k~-P~nV~SASL~P~ 235 (334)
T KOG0278|consen 166 TVRLWDHRTGTEVQSL-------EFNSPVTSLEVSQDGRILTIA--YGSSVKFWDAKSFGLLKSYKM-PCNVESASLHPK 235 (334)
T ss_pred ceEEEEeccCcEEEEE-------ecCCCCcceeeccCCCEEEEe--cCceeEEeccccccceeeccC-ccccccccccCC
Confidence 9999999998764431 126789999999999988765 478999999998887776643 345899999999
Q ss_pred CCEEEEEECCCcEEEEECCCCcEEEEE-eCC-CCeEEEEEc--CCEEEEEECCCcEEEEec
Q 001455 1017 FIYLNYNSSASSLQIWLRGTQQKVGRI-SAG-SKITSLLTA--NDIVLCGTETGLIKGWIP 1073 (1074)
Q Consensus 1017 G~~LaSGS~DGtIrIWDl~tg~~l~tL-~~h-s~VtsLa~d--g~~LaSGs~DG~IrIWdi 1073 (1074)
..++++|++|+.++.||..+|..+..+ ++| ++|.|+.|+ |...++|+.||+|++|..
T Consensus 236 k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt 296 (334)
T KOG0278|consen 236 KEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQT 296 (334)
T ss_pred CceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEe
Confidence 999999999999999999999999986 777 779997765 669999999999999975
No 42
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.92 E-value=7.3e-23 Score=238.30 Aligned_cols=271 Identities=15% Similarity=0.248 Sum_probs=228.4
Q ss_pred CCcEEEEEEeC--CEEEEEECCCcEEEEECCCCCeeEEEEeccCCCCEEEEEEcCCCCEEEEEeCC-CeEEEEEccCCce
Q 001455 794 SGAVTALIYYK--GLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSAD-KTIGVWQMVQRKL 870 (1074)
Q Consensus 794 ~~~VtsLafS~--~~LaSGs~DGtVrIWDl~t~~~~~i~tl~gH~~~VtsLafSpdg~~LaSGS~D-GtIrIWDl~tg~~ 870 (1074)
...|++.+|+. +.|++|-..|...+|.+..-. +++.+.-...+|..++|+..|++|+.|+.. |.+.||+..+...
T Consensus 265 ~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~--lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsY 342 (893)
T KOG0291|consen 265 SSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFN--LIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESY 342 (893)
T ss_pred ccceeeeeccCCceEEEEEecCCeeEEEecCCce--EEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccce
Confidence 37899999993 479999999999999998764 577777677899999999999999987654 8999999988764
Q ss_pred EEEEEeccCCCeEE--EccCCCeEEEEecCCeEEEEeCCC--ceeeeec-CCCeEEEEEe-CCE-EEEEECCCcEEEEEc
Q 001455 871 ELIEVIATKEPIRK--LDTYGKTIFASTQGHRMKVIDSSR--TLKDIYR-SKGIKSMSVV-QGK-IYIGCMDSSIQELAV 943 (1074)
Q Consensus 871 ~~~~~~~h~~~V~s--~s~dg~~L~sgS~DgtI~VWDl~~--~l~~l~~-~~~V~sLa~s-dgk-LlaGs~DgsI~IwDl 943 (1074)
+. ...+|...+.+ ++|+|+++++|+.||.|+|||... +..++.. ..+|+.+.|. .|+ +++.+-||+|+.||+
T Consensus 343 Vl-KQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDl 421 (893)
T KOG0291|consen 343 VL-KQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDL 421 (893)
T ss_pred ee-eccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeee
Confidence 43 55678888876 579999999999999999999985 6777764 5679999997 555 888999999999999
Q ss_pred cCCceeeeccccccccC-CCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEccCCCCCeEEEEEecCCCEEEE
Q 001455 944 SNNVEREIKAPFKSWRL-QSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNY 1022 (1074)
Q Consensus 944 ~tg~~~~i~~~~r~~~~-h~~~I~sL~~spd~i~las~S~dDgtI~IWDl~t~~~i~~l~gH~~~VtsLafSPDG~~LaS 1022 (1074)
...+.-. ++.. ......+++..|.|..+.+++-+.-.|.+|+.++|+.+..+.||.++|.+++|+|+|..|+|
T Consensus 422 kRYrNfR------Tft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS 495 (893)
T KOG0291|consen 422 KRYRNFR------TFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLAS 495 (893)
T ss_pred cccceee------eecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEe
Confidence 8755422 2221 23456788888989988888766678999999999999999999999999999999999999
Q ss_pred EECCCcEEEEEC-CCCcEEEEEeCCCCeEEEEE--cCCEEEEEECCCcEEEEec
Q 001455 1023 NSSASSLQIWLR-GTQQKVGRISAGSKITSLLT--ANDIVLCGTETGLIKGWIP 1073 (1074)
Q Consensus 1023 GS~DGtIrIWDl-~tg~~l~tL~~hs~VtsLa~--dg~~LaSGs~DG~IrIWdi 1073 (1074)
||.|.+|++||+ .....+.++...+.|+.++| +|+-|++++.||.|.+||+
T Consensus 496 ~SWDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVaTldgqItf~d~ 549 (893)
T KOG0291|consen 496 GSWDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAVATLDGQITFFDI 549 (893)
T ss_pred ccccceEEEEEeeccCceeeeEeeccceeEEEEcCCCCeEEEEEecceEEEEEh
Confidence 999999999995 45566788887778888776 4889999999999999996
No 43
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=1.1e-23 Score=229.51 Aligned_cols=259 Identities=17% Similarity=0.197 Sum_probs=218.8
Q ss_pred EEEEECCCcEEEEECCCCCeeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEccCCceEEEEEeccCCCeEE--
Q 001455 807 LCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATKEPIRK-- 884 (1074)
Q Consensus 807 LaSGs~DGtVrIWDl~t~~~~~i~tl~gH~~~VtsLafSpdg~~LaSGS~DGtIrIWDl~tg~~~~~~~~~h~~~V~s-- 884 (1074)
++.|.--|..+..+.--......+.+.+|..+|+.+-|+|+-..+++++.|++|++||..+|++ .....+|.+.+..
T Consensus 79 l~~g~pt~~~~~~~~wipRp~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~-e~~LrGHt~sv~di~ 157 (406)
T KOG0295|consen 79 LIAGDPTGSKRTPALWIPRPNLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGEL-ERSLRGHTDSVFDIS 157 (406)
T ss_pred cccCCCCcCccChhhcCCCCCchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhh-hhhhhccccceeEEE
Confidence 4445444544444433333345677789999999999999999999999999999999999987 4466788888876
Q ss_pred EccCCCeEEEEecCCeEEEEeCCC---ceeeeec-CCCeEEEEE-e-CCEEEEEECCCcEEEEEccCCceeeeccccccc
Q 001455 885 LDTYGKTIFASTQGHRMKVIDSSR---TLKDIYR-SKGIKSMSV-V-QGKIYIGCMDSSIQELAVSNNVEREIKAPFKSW 958 (1074)
Q Consensus 885 ~s~dg~~L~sgS~DgtI~VWDl~~---~l~~l~~-~~~V~sLa~-s-dgkLlaGs~DgsI~IwDl~tg~~~~i~~~~r~~ 958 (1074)
|+..|.++++++.|-.+++||..+ +.+...+ ...|.++.| + +..+++++.|.+|+.|++.+|.... .+
T Consensus 158 ~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~------t~ 231 (406)
T KOG0295|consen 158 FDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVK------TF 231 (406)
T ss_pred EecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEE------ec
Confidence 467788999999999999999984 4444443 456889988 5 6679999999999999999987754 44
Q ss_pred cCCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEccCCCCCeEEEEEecC---------------CCEEEEE
Q 001455 959 RLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVED---------------FIYLNYN 1023 (1074)
Q Consensus 959 ~~h~~~I~sL~~spd~i~las~S~dDgtI~IWDl~t~~~i~~l~gH~~~VtsLafSPD---------------G~~LaSG 1023 (1074)
.+|...+..+..+.||..+++++ .|.++++|-..++.+...+.+|..+|-+++|-|. |+++.++
T Consensus 232 ~~h~ewvr~v~v~~DGti~As~s-~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~ 310 (406)
T KOG0295|consen 232 PGHSEWVRMVRVNQDGTIIASCS-NDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSG 310 (406)
T ss_pred cCchHhEEEEEecCCeeEEEecC-CCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEee
Confidence 67888999999999999999887 7889999999999999999999999999999652 3599999
Q ss_pred ECCCcEEEEECCCCcEEEEEeCC-CCeEEEEEc--CCEEEEEECCCcEEEEec
Q 001455 1024 SSASSLQIWLRGTQQKVGRISAG-SKITSLLTA--NDIVLCGTETGLIKGWIP 1073 (1074)
Q Consensus 1024 S~DGtIrIWDl~tg~~l~tL~~h-s~VtsLa~d--g~~LaSGs~DG~IrIWdi 1073 (1074)
+.|++|++||+.+|.++.++.+| ++|.+++|+ |+||+|+.+|+++++||.
T Consensus 311 SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl 363 (406)
T KOG0295|consen 311 SRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDL 363 (406)
T ss_pred cccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEe
Confidence 99999999999999999999999 559999987 889999999999999985
No 44
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.91 E-value=2.4e-23 Score=225.69 Aligned_cols=236 Identities=16% Similarity=0.275 Sum_probs=204.8
Q ss_pred EEEEeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEccCCceEEEEEeccCCCeEE--EccCCCeEEEEecCCeEEEEe
Q 001455 828 LVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATKEPIRK--LDTYGKTIFASTQGHRMKVID 905 (1074)
Q Consensus 828 ~i~tl~gH~~~VtsLafSpdg~~LaSGS~DGtIrIWDl~tg~~~~~~~~~h~~~V~s--~s~dg~~L~sgS~DgtI~VWD 905 (1074)
+...+++|.+.|.|+++.|.+.+++||+.|++|+|||+.+|++. ....+|...|.. ++.-..++++++.|+.|+.||
T Consensus 143 l~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lk-ltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwD 221 (460)
T KOG0285|consen 143 LYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLK-LTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWD 221 (460)
T ss_pred ehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEE-EeecchhheeeeeeecccCceEEEecCCCeeEEEe
Confidence 45567899999999999999999999999999999999999854 456778888875 567777999999999999999
Q ss_pred CC--Cceeeeec-CCCeEEEEEe--CCEEEEEECCCcEEEEEccCCceeeeccccccccCCCCCeEEEEEcCCceEEEEE
Q 001455 906 SS--RTLKDIYR-SKGIKSMSVV--QGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASS 980 (1074)
Q Consensus 906 l~--~~l~~l~~-~~~V~sLa~s--dgkLlaGs~DgsI~IwDl~tg~~~~i~~~~r~~~~h~~~I~sL~~spd~i~las~ 980 (1074)
+. +.++.+.+ -.+|.|++.. ...+++|+.|.++++||+++... +..+.+|..+|.++.+.|-...++++
T Consensus 222 Le~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~------V~~l~GH~~~V~~V~~~~~dpqvit~ 295 (460)
T KOG0285|consen 222 LEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRAS------VHVLSGHTNPVASVMCQPTDPQVITG 295 (460)
T ss_pred chhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccce------EEEecCCCCcceeEEeecCCCceEEe
Confidence 97 33344443 3569999884 77799999999999999999443 45668999999999999877677777
Q ss_pred ecCCCeEEEEECCCCCeEEEccCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCC-eEEEEEc-CCE
Q 001455 981 SVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAGSK-ITSLLTA-NDI 1058 (1074)
Q Consensus 981 S~dDgtI~IWDl~t~~~i~~l~gH~~~VtsLafSPDG~~LaSGS~DGtIrIWDl~tg~~l~tL~~hs~-VtsLa~d-g~~ 1058 (1074)
+ .|++|++||...|+...++..|...|.+++.+|....+|++|.|. |+-|++..|..+..+.+|.. |++++.+ ..+
T Consensus 296 S-~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dn-ik~w~~p~g~f~~nlsgh~~iintl~~nsD~v 373 (460)
T KOG0285|consen 296 S-HDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDN-IKQWKLPEGEFLQNLSGHNAIINTLSVNSDGV 373 (460)
T ss_pred c-CCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCcc-ceeccCCccchhhccccccceeeeeeeccCce
Confidence 6 789999999999999999999999999999999999999999775 99999999999999999966 8889876 669
Q ss_pred EEEEECCCcEEEEe
Q 001455 1059 VLCGTETGLIKGWI 1072 (1074)
Q Consensus 1059 LaSGs~DG~IrIWd 1072 (1074)
+++|++.|.+..||
T Consensus 374 ~~~G~dng~~~fwd 387 (460)
T KOG0285|consen 374 LVSGGDNGSIMFWD 387 (460)
T ss_pred EEEcCCceEEEEEe
Confidence 99999999999998
No 45
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.91 E-value=4.1e-24 Score=235.27 Aligned_cols=230 Identities=17% Similarity=0.190 Sum_probs=201.8
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCeEEEEEccCCceEEEEEeccCCCeEE--EccCCCeEEEEecCCeEEEEeCC-Cceee
Q 001455 836 RKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATKEPIRK--LDTYGKTIFASTQGHRMKVIDSS-RTLKD 912 (1074)
Q Consensus 836 ~~~VtsLafSpdg~~LaSGS~DGtIrIWDl~tg~~~~~~~~~h~~~V~s--~s~dg~~L~sgS~DgtI~VWDl~-~~l~~ 912 (1074)
.-+|..+.|.|+|+.|++|+..|.+.+|+..+-. .......|+.+|.+ ++.++.++++|+.+|.|++|+.+ ..++.
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fn-FEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~ 174 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFN-FETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKI 174 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCceee-HHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHH
Confidence 3579999999999999999999999999974432 12244579999987 57889999999999999999998 44555
Q ss_pred eecC--CCeEEEEEe--CCEEEEEECCCcEEEEEccCCceeeeccccccccCCCCCeEEEEEcCCceEEEEEecCCCeEE
Q 001455 913 IYRS--KGIKSMSVV--QGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIK 988 (1074)
Q Consensus 913 l~~~--~~V~sLa~s--dgkLlaGs~DgsI~IwDl~tg~~~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S~dDgtI~ 988 (1074)
+..+ ..|++++|+ |.++++++.||+|+|||....+. .+.+.+|+-.|.++++||..-.+++++ .|..|+
T Consensus 175 ~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~ke------e~vL~GHgwdVksvdWHP~kgLiasgs-kDnlVK 247 (464)
T KOG0284|consen 175 IQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKE------ERVLRGHGWDVKSVDWHPTKGLIASGS-KDNLVK 247 (464)
T ss_pred hhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCch------hheeccCCCCcceeccCCccceeEEcc-CCceeE
Confidence 5543 569999997 88899999999999999987543 245589999999999999999899888 778999
Q ss_pred EEECCCCCeEEEccCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCC-eEEEEEc---CCEEEEEEC
Q 001455 989 EWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAGSK-ITSLLTA---NDIVLCGTE 1064 (1074)
Q Consensus 989 IWDl~t~~~i~~l~gH~~~VtsLafSPDG~~LaSGS~DGtIrIWDl~tg~~l~tL~~hs~-VtsLa~d---g~~LaSGs~ 1064 (1074)
+||.+++.++.++.+|...|..+.|+|++.||+|+|.|..++++|+++.+.++++++|.+ |+++.|+ ..+|.+|+.
T Consensus 248 lWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~ 327 (464)
T KOG0284|consen 248 LWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGS 327 (464)
T ss_pred eecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccC
Confidence 999999999999999999999999999999999999999999999999999999999955 9999987 569999999
Q ss_pred CCcEEEEec
Q 001455 1065 TGLIKGWIP 1073 (1074)
Q Consensus 1065 DG~IrIWdi 1073 (1074)
||.|..|..
T Consensus 328 Dgsvvh~~v 336 (464)
T KOG0284|consen 328 DGSVVHWVV 336 (464)
T ss_pred CCceEEEec
Confidence 999999964
No 46
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.90 E-value=2.1e-22 Score=233.41 Aligned_cols=269 Identities=16% Similarity=0.206 Sum_probs=226.6
Q ss_pred CCCCCcEEEEEEe-CCEEEEEECCCcEEEEECCCCCeeEEEEeccCCCCEEE-EEEcC-CCCEEEEEeCCCeEEEEEccC
Q 001455 791 HKCSGAVTALIYY-KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTS-FSLFE-PGESLLSGSADKTIGVWQMVQ 867 (1074)
Q Consensus 791 ~gH~~~VtsLafS-~~~LaSGs~DGtVrIWDl~t~~~~~i~tl~gH~~~Vts-LafSp-dg~~LaSGS~DGtIrIWDl~t 867 (1074)
+||...|..+++. +..+++||.||++++|+-...+....+.+.+|.+-|.+ ++|.+ ++..+++|+.|++|.+|...+
T Consensus 11 ~gH~~DVr~v~~~~~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~ 90 (745)
T KOG0301|consen 11 EGHKSDVRAVAVTDGVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQ 90 (745)
T ss_pred ccCccchheeEecCCeEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEecCC
Confidence 3999999999998 55799999999999999987776666788899998888 88886 344599999999999999987
Q ss_pred CceEEEEEeccCCCeEEEccC-CCeEEEEecCCeEEEEeCCCceeeeecC-CCeEEEEE-eCCEEEEEECCCcEEEEEcc
Q 001455 868 RKLELIEVIATKEPIRKLDTY-GKTIFASTQGHRMKVIDSSRTLKDIYRS-KGIKSMSV-VQGKIYIGCMDSSIQELAVS 944 (1074)
Q Consensus 868 g~~~~~~~~~h~~~V~s~s~d-g~~L~sgS~DgtI~VWDl~~~l~~l~~~-~~V~sLa~-sdgkLlaGs~DgsI~IwDl~ 944 (1074)
... .....+|+..|.+++.. ...+++||+|.++++|-.......+.+| ..|+.+.. +++.+++|+.|.+|++|.-.
T Consensus 91 ~~P-~~~LkgH~snVC~ls~~~~~~~iSgSWD~TakvW~~~~l~~~l~gH~asVWAv~~l~e~~~vTgsaDKtIklWk~~ 169 (745)
T KOG0301|consen 91 AEP-LYTLKGHKSNVCSLSIGEDGTLISGSWDSTAKVWRIGELVYSLQGHTASVWAVASLPENTYVTGSADKTIKLWKGG 169 (745)
T ss_pred CCc-hhhhhccccceeeeecCCcCceEecccccceEEecchhhhcccCCcchheeeeeecCCCcEEeccCcceeeeccCC
Confidence 764 34677999999999843 3358999999999999998777766654 45888776 57799999999999999874
Q ss_pred CCceeeeccccccccCCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEccCCCCCeEEEEEecCCCEEEEEE
Q 001455 945 NNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNS 1024 (1074)
Q Consensus 945 tg~~~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S~dDgtI~IWDl~t~~~i~~l~gH~~~VtsLafSPDG~~LaSGS 1024 (1074)
+ ..+.+.+|...|..+++-++..++-++ .||.|+.|+. +|.++..+.||...|.++...+++..++|++
T Consensus 170 ~--------~l~tf~gHtD~VRgL~vl~~~~flScs--NDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~g 238 (745)
T KOG0301|consen 170 T--------LLKTFSGHTDCVRGLAVLDDSHFLSCS--NDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTG 238 (745)
T ss_pred c--------hhhhhccchhheeeeEEecCCCeEeec--CCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEec
Confidence 3 125678999999999999997776654 5899999999 7788888999999999999889999999999
Q ss_pred CCCcEEEEECCCCcEEEEEeCCC-CeEEEEE-cCCEEEEEECCCcEEEEec
Q 001455 1025 SASSLQIWLRGTQQKVGRISAGS-KITSLLT-ANDIVLCGTETGLIKGWIP 1073 (1074)
Q Consensus 1025 ~DGtIrIWDl~tg~~l~tL~~hs-~VtsLa~-dg~~LaSGs~DG~IrIWdi 1073 (1074)
+|++++||+.. .+.+.+..++ .|+++.+ .+.-+++|++||.||||..
T Consensus 239 EDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgDIvvg~SDG~VrVfT~ 287 (745)
T KOG0301|consen 239 EDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGDIVVGGSDGRVRVFTV 287 (745)
T ss_pred CCceEEEeecC--ceEEEEecCccceEEEEEeeCCCEEEeccCceEEEEEe
Confidence 99999999877 7888888775 5888764 3556788999999999963
No 47
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.90 E-value=1.2e-21 Score=208.89 Aligned_cols=236 Identities=21% Similarity=0.306 Sum_probs=195.4
Q ss_pred EEeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEccCCceEEEEEeccCCCeEE--EccCCCeEEEEecCCeEEEEeCC
Q 001455 830 WDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATKEPIRK--LDTYGKTIFASTQGHRMKVIDSS 907 (1074)
Q Consensus 830 ~tl~gH~~~VtsLafSpdg~~LaSGS~DGtIrIWDl~tg~~~~~~~~~h~~~V~s--~s~dg~~L~sgS~DgtI~VWDl~ 907 (1074)
.++++|.++|++++|+|+++.|++++.||.|++||+.+++.. .....|...+.. +.++++.+++++.++.|++||+.
T Consensus 3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~ 81 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELL-RTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLE 81 (289)
T ss_pred hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcE-EEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcC
Confidence 457799999999999999999999999999999999887633 344566667644 56788899999999999999998
Q ss_pred C--ceeeeecC-CCeEEEEEe-CCEEEE-EECCCcEEEEEccCCceeeeccccccccCCCCCeEEEEEcCCceEEEEEec
Q 001455 908 R--TLKDIYRS-KGIKSMSVV-QGKIYI-GCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSV 982 (1074)
Q Consensus 908 ~--~l~~l~~~-~~V~sLa~s-dgkLla-Gs~DgsI~IwDl~tg~~~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S~ 982 (1074)
. ....+..+ ..+.++.|. ++.+++ ++.||.+.+||+.+++... .+..|...+.++.++|++.++++++
T Consensus 82 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~------~~~~~~~~i~~~~~~~~~~~l~~~~- 154 (289)
T cd00200 82 TGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLT------TLRGHTDWVNSVAFSPDGTFVASSS- 154 (289)
T ss_pred cccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEE------EeccCCCcEEEEEEcCcCCEEEEEc-
Confidence 4 34444443 469999997 556555 4559999999998755433 2346678899999999988777665
Q ss_pred CCCeEEEEECCCCCeEEEccCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCcEEEEEeCCC-CeEEEEEcC--CEE
Q 001455 983 EGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAGS-KITSLLTAN--DIV 1059 (1074)
Q Consensus 983 dDgtI~IWDl~t~~~i~~l~gH~~~VtsLafSPDG~~LaSGS~DGtIrIWDl~tg~~l~tL~~hs-~VtsLa~dg--~~L 1059 (1074)
.++.+++||..++.....+..|...|.++.|+|+++.+++++.||.|++||..+++.+..+..|. .|.++.|++ .++
T Consensus 155 ~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 234 (289)
T cd00200 155 QDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLL 234 (289)
T ss_pred CCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEE
Confidence 68899999999888888888899899999999999999999999999999999999999987774 699988874 577
Q ss_pred EEEECCCcEEEEec
Q 001455 1060 LCGTETGLIKGWIP 1073 (1074)
Q Consensus 1060 aSGs~DG~IrIWdi 1073 (1074)
++++.||.|++|++
T Consensus 235 ~~~~~~~~i~i~~~ 248 (289)
T cd00200 235 ASGSEDGTIRVWDL 248 (289)
T ss_pred EEEcCCCcEEEEEc
Confidence 88888999999985
No 48
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.90 E-value=4e-22 Score=209.95 Aligned_cols=271 Identities=20% Similarity=0.187 Sum_probs=216.9
Q ss_pred cCCCCCcEEEEEEe--CCEEEEEECCCcEEEEECCCCCeeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEccC
Q 001455 790 SHKCSGAVTALIYY--KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQ 867 (1074)
Q Consensus 790 ~~gH~~~VtsLafS--~~~LaSGs~DGtVrIWDl~t~~~~~i~tl~gH~~~VtsLafSpdg~~LaSGS~DGtIrIWDl~t 867 (1074)
.+||..+++.|.|+ +++|++++.|.++.||-..+++ .+.++.||+++|+|+..+-+.++++||+.|.++++||+.+
T Consensus 6 l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGe--rlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~t 83 (327)
T KOG0643|consen 6 LQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGE--RLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVET 83 (327)
T ss_pred cccCccccceEEecCCCcEEEEecCCCCceEEEecCCc--eeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCC
Confidence 35899999999999 7799999999999999887774 4899999999999999999999999999999999999999
Q ss_pred CceEEEEEeccCCCeE--EEccCCCeEEEEec-----CCeEEEEeCCCc---------eeee-ecCCCeEEEEEe--CCE
Q 001455 868 RKLELIEVIATKEPIR--KLDTYGKTIFASTQ-----GHRMKVIDSSRT---------LKDI-YRSKGIKSMSVV--QGK 928 (1074)
Q Consensus 868 g~~~~~~~~~h~~~V~--s~s~dg~~L~sgS~-----DgtI~VWDl~~~---------l~~l-~~~~~V~sLa~s--dgk 928 (1074)
|+...... ...+|. .|+++|++++..+. .+.|.++|++.. ...+ .+...++.+.|. +..
T Consensus 84 Gk~la~~k--~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ 161 (327)
T KOG0643|consen 84 GKQLATWK--TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGET 161 (327)
T ss_pred CcEEEEee--cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCE
Confidence 98765444 444454 58889998887754 458999998721 2222 235568888885 555
Q ss_pred EEEEECCCcEEEEEccCCceeeeccccccccCCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEccCCCCCe
Q 001455 929 IYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTI 1008 (1074)
Q Consensus 929 LlaGs~DgsI~IwDl~tg~~~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S~dDgtI~IWDl~t~~~i~~l~gH~~~V 1008 (1074)
+++|..||.|.+||+++|.... ..-..|...|+.++++++..+.++++ .|.+-++||..+-.+++++. ...+|
T Consensus 162 ii~Ghe~G~is~~da~~g~~~v-----~s~~~h~~~Ind~q~s~d~T~FiT~s-~Dttakl~D~~tl~v~Kty~-te~Pv 234 (327)
T KOG0643|consen 162 IIAGHEDGSISIYDARTGKELV-----DSDEEHSSKINDLQFSRDRTYFITGS-KDTTAKLVDVRTLEVLKTYT-TERPV 234 (327)
T ss_pred EEEecCCCcEEEEEcccCceee-----echhhhccccccccccCCcceEEecc-cCccceeeeccceeeEEEee-ecccc
Confidence 8889999999999999986533 23356788999999999999999887 88999999999999888874 45679
Q ss_pred EEEEEecCCCEEEEEECCCcEEEE--ECCC------------CcEEEEEeCC-CCeEEEEEc--CCEEEEEECCCcEEEE
Q 001455 1009 QAMAVVEDFIYLNYNSSASSLQIW--LRGT------------QQKVGRISAG-SKITSLLTA--NDIVLCGTETGLIKGW 1071 (1074)
Q Consensus 1009 tsLafSPDG~~LaSGS~DGtIrIW--Dl~t------------g~~l~tL~~h-s~VtsLa~d--g~~LaSGs~DG~IrIW 1071 (1074)
++.+++|.-.+++.|+....--|= +.+. -+.+..+++| ++|++++|+ |+..+||+.||.|++.
T Consensus 235 N~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h 314 (327)
T KOG0643|consen 235 NTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLH 314 (327)
T ss_pred cceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEE
Confidence 999999988888777643222221 2222 2446788899 889998865 7799999999999984
No 49
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.90 E-value=3.6e-23 Score=225.01 Aligned_cols=268 Identities=14% Similarity=0.227 Sum_probs=204.4
Q ss_pred CCCCCcEEEEEEeCC---EEEEEECCCcEEEEECCCCCeeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEccC
Q 001455 791 HKCSGAVTALIYYKG---LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQ 867 (1074)
Q Consensus 791 ~gH~~~VtsLafS~~---~LaSGs~DGtVrIWDl~t~~~~~i~tl~gH~~~VtsLafSpdg~~LaSGS~DGtIrIWDl~t 867 (1074)
.||.+.|.|++-+++ .+|+|+.||.|+|||+....+ +.+++.|.+.|..+++.. ..++++|.|++|+.|.+..
T Consensus 63 ~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~--~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~ 138 (433)
T KOG0268|consen 63 DGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQREC--IRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDG 138 (433)
T ss_pred cccccccchhhcCcchhhhhhccccCceEEEEehhhhhh--hheeecccCceeeEEecc--cceEEecCCcceeeeeccC
Confidence 499999999999944 599999999999999998755 789999999999999966 6789999999999999865
Q ss_pred CceEEEEEeccCCCeEEEccCCCeEEEEecCCeEEEEeCCC--ceeeee-cCCCeEEEEEe--CCE-EEEEECCCcEEEE
Q 001455 868 RKLELIEVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSSR--TLKDIY-RSKGIKSMSVV--QGK-IYIGCMDSSIQEL 941 (1074)
Q Consensus 868 g~~~~~~~~~h~~~V~s~s~dg~~L~sgS~DgtI~VWDl~~--~l~~l~-~~~~V~sLa~s--dgk-LlaGs~DgsI~Iw 941 (1074)
. .......+..+..++.+...-..++.+..|.|||..+ ....+. +...|.++.|+ ... |.+++.|+.|.+|
T Consensus 139 ~---p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLy 215 (433)
T KOG0268|consen 139 P---PLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLY 215 (433)
T ss_pred C---cceeeeccccccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEE
Confidence 2 1223334444555554433323333445799999873 334433 45679999996 333 4456799999999
Q ss_pred EccCCceeeeccccccccCCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCC-CCeEEEccCCCCCeEEEEEecCCCEE
Q 001455 942 AVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHR-KPQISIAPEKGTTIQAMAVVEDFIYL 1020 (1074)
Q Consensus 942 Dl~tg~~~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S~dDgtI~IWDl~t-~~~i~~l~gH~~~VtsLafSPDG~~L 1020 (1074)
|++++....-. .....-+.++|+|+...+++ +.+|..+..||++. ...+....+|...|.+++|||.|+-+
T Consensus 216 D~R~~~Pl~KV-------i~~mRTN~IswnPeafnF~~-a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~Ef 287 (433)
T KOG0268|consen 216 DLRQASPLKKV-------ILTMRTNTICWNPEAFNFVA-ANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEF 287 (433)
T ss_pred ecccCCcccee-------eeeccccceecCccccceee-ccccccceehhhhhhcccchhhcccceeEEEeccCCCcchh
Confidence 99987653211 11344567899995554444 44999999999765 45677888999999999999999999
Q ss_pred EEEECCCcEEEEECCCCcEEEEEeCC--CCeEEEEEc--CCEEEEEECCCcEEEEec
Q 001455 1021 NYNSSASSLQIWLRGTQQKVGRISAG--SKITSLLTA--NDIVLCGTETGLIKGWIP 1073 (1074)
Q Consensus 1021 aSGS~DGtIrIWDl~tg~~l~tL~~h--s~VtsLa~d--g~~LaSGs~DG~IrIWdi 1073 (1074)
++||.|.+|+||..+.+..-..+... ..|.|+.|+ .++++|||+|+.|++|..
T Consensus 288 vsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka 344 (433)
T KOG0268|consen 288 VSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKA 344 (433)
T ss_pred ccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeec
Confidence 99999999999998887765444332 349998886 779999999999999963
No 50
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.89 E-value=2.8e-21 Score=244.83 Aligned_cols=237 Identities=18% Similarity=0.218 Sum_probs=188.4
Q ss_pred CCCcEEEEEEe---CCEEEEEECCCcEEEEECCCCCeeEEEEeccCCCCEEEEEEcC-CCCEEEEEeCCCeEEEEEccCC
Q 001455 793 CSGAVTALIYY---KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFE-PGESLLSGSADKTIGVWQMVQR 868 (1074)
Q Consensus 793 H~~~VtsLafS---~~~LaSGs~DGtVrIWDl~t~~~~~i~tl~gH~~~VtsLafSp-dg~~LaSGS~DGtIrIWDl~tg 868 (1074)
+...|.+++|+ +.+|++|+.||+|++||+.+++ .+..+.+|.+.|++++|+| ++..|+||+.||+|++||+.++
T Consensus 531 ~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~--~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~ 608 (793)
T PLN00181 531 SRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQ--LVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQG 608 (793)
T ss_pred ccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCe--EEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCC
Confidence 35689999998 4689999999999999999874 4678899999999999997 7889999999999999999988
Q ss_pred ceEEEEEeccCCCeEEE---ccCCCeEEEEecCCeEEEEeCCCc---eeeeec-CCCeEEEEEe-CCEEEEEECCCcEEE
Q 001455 869 KLELIEVIATKEPIRKL---DTYGKTIFASTQGHRMKVIDSSRT---LKDIYR-SKGIKSMSVV-QGKIYIGCMDSSIQE 940 (1074)
Q Consensus 869 ~~~~~~~~~h~~~V~s~---s~dg~~L~sgS~DgtI~VWDl~~~---l~~l~~-~~~V~sLa~s-dgkLlaGs~DgsI~I 940 (1074)
....... +...+.++ .+++..+++|+.|+.|++||+... ...+.. ...|.++.|. .+.+++++.|+.|++
T Consensus 609 ~~~~~~~--~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~~~~~lvs~s~D~~iki 686 (793)
T PLN00181 609 VSIGTIK--TKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVDSSTLVSSSTDNTLKL 686 (793)
T ss_pred cEEEEEe--cCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEeCCCEEEEEECCCEEEE
Confidence 7554332 33456654 356889999999999999999732 333333 4579999997 455888999999999
Q ss_pred EEccCCceeeeccccccccCCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEE-------------ccCCCCC
Q 001455 941 LAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISI-------------APEKGTT 1007 (1074)
Q Consensus 941 wDl~tg~~~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S~dDgtI~IWDl~t~~~i~~-------------l~gH~~~ 1007 (1074)
||+..+.......+.+.+.+|...+..+.+++++.++++++ .|++|++|+......+.. ...|...
T Consensus 687 Wd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs-~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 765 (793)
T PLN00181 687 WDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGS-ETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQF 765 (793)
T ss_pred EeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEe-CCCEEEEEECCCCCceEEEecccCCcccccccCCCCcE
Confidence 99976422111123355678888999999999999999887 889999999765432211 1234567
Q ss_pred eEEEEEecCCCEEEEEECCCcEEEEEC
Q 001455 1008 IQAMAVVEDFIYLNYNSSASSLQIWLR 1034 (1074)
Q Consensus 1008 VtsLafSPDG~~LaSGS~DGtIrIWDl 1034 (1074)
|.+++|+|++.+|++|+.||.|+||++
T Consensus 766 V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 766 ISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred EEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 999999999999999999999999985
No 51
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=1.1e-21 Score=224.56 Aligned_cols=266 Identities=13% Similarity=0.128 Sum_probs=211.8
Q ss_pred ccccccccccccccccccCCCcccc-eeeEEEEeecCCCCCcEEEEEEe--CCEEEEEECCCcEEEEECCCCCeeEEEEe
Q 001455 756 SNVTWMAEELHKAADYYLPNISRIS-CVHTQILEASHKCSGAVTALIYY--KGLLCSGFSDGSIKMWDIKKQSAMLVWDV 832 (1074)
Q Consensus 756 k~~~w~a~~~~k~~~~~~p~~~~~~-~~~tl~le~~~gH~~~VtsLafS--~~~LaSGs~DGtVrIWDl~t~~~~~i~tl 832 (1074)
+.+..++.+..-+...+.+...-|+ -.++.+ +.-+-..-+|.+..|- .+++++|+.|+.||||+.++++ .+++|
T Consensus 17 KsVd~HPtePw~la~LynG~V~IWnyetqtmV-ksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~e--kV~~F 93 (794)
T KOG0276|consen 17 KSVDFHPTEPWILAALYNGDVQIWNYETQTMV-KSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGE--KVKTF 93 (794)
T ss_pred eeeecCCCCceEEEeeecCeeEEEecccceee-eeeeecccchhhheeeeccceEEEecCCceEEEEecccce--eeEEe
Confidence 3445555555444444444433444 222222 2222346788998888 7799999999999999999985 48999
Q ss_pred ccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEccCCceEEEEEeccCCCeEEEc--c-CCCeEEEEecCCeEEEEeCCC-
Q 001455 833 KEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATKEPIRKLD--T-YGKTIFASTQGHRMKVIDSSR- 908 (1074)
Q Consensus 833 ~gH~~~VtsLafSpdg~~LaSGS~DGtIrIWDl~tg~~~~~~~~~h~~~V~s~s--~-dg~~L~sgS~DgtI~VWDl~~- 908 (1074)
..|.+.|.|++.+|..++++|+|+|-+|++||.+.+=.....+.+|...|.++. | +.+.+++++-|++|+||.+..
T Consensus 94 eAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~ 173 (794)
T KOG0276|consen 94 EAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSP 173 (794)
T ss_pred eccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCC
Confidence 999999999999999999999999999999999876444556779999998754 3 556999999999999999984
Q ss_pred -ceeeeec-CCCeEEEEEe-CC---EEEEEECCCcEEEEEccCCceeeeccccccccCCCCCeEEEEEcCCceEEEEEec
Q 001455 909 -TLKDIYR-SKGIKSMSVV-QG---KIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSV 982 (1074)
Q Consensus 909 -~l~~l~~-~~~V~sLa~s-dg---kLlaGs~DgsI~IwDl~tg~~~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S~ 982 (1074)
+..++.+ .++|.|+.+- .| .+++|+.|..|++||.++..+ ++++.+|...|..+.|||.-..+++++
T Consensus 174 ~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~C------V~TLeGHt~Nvs~v~fhp~lpiiisgs- 246 (794)
T KOG0276|consen 174 HPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSC------VQTLEGHTNNVSFVFFHPELPIIISGS- 246 (794)
T ss_pred CCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHH------HHHhhcccccceEEEecCCCcEEEEec-
Confidence 3444444 5679999994 33 488999999999999999444 456789999999999999999999887
Q ss_pred CCCeEEEEECCCCCeEEEccCCCCCeEEEEEecCCCEEEEEECCCcEEE
Q 001455 983 EGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQI 1031 (1074)
Q Consensus 983 dDgtI~IWDl~t~~~i~~l~gH~~~VtsLafSPDG~~LaSGS~DGtIrI 1031 (1074)
+||+++||+..+.+...++.-....|++++-.+.++.++.|...|.|.+
T Consensus 247 EDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 247 EDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTV 295 (794)
T ss_pred CCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEEE
Confidence 9999999999988887777777788999999998888999987776654
No 52
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=1.2e-21 Score=230.61 Aligned_cols=244 Identities=16% Similarity=0.246 Sum_probs=202.2
Q ss_pred CCCCcEEEEEEe--CCEEEEEECCCcEEEEECCCCCeeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEccCCc
Q 001455 792 KCSGAVTALIYY--KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRK 869 (1074)
Q Consensus 792 gH~~~VtsLafS--~~~LaSGs~DGtVrIWDl~t~~~~~i~tl~gH~~~VtsLafSpdg~~LaSGS~DGtIrIWDl~tg~ 869 (1074)
+|.|+|..|+|+ ..+++|||.|..|+||+.++.++ +.++.||-+.|..+.|++.-++|+|+|+|.||+||+..+++
T Consensus 49 eHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrc--lftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~ 126 (1202)
T KOG0292|consen 49 EHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRC--LFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRK 126 (1202)
T ss_pred ccCCccceeeecCCCCeEEecCCccEEEEEeccccee--hhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCc
Confidence 899999999999 55899999999999999998865 89999999999999999999999999999999999999998
Q ss_pred eEEEEEeccCCCeEE--EccCCCeEEEEecCCeEEEEeCCCceee-------------------ee------------c-
Q 001455 870 LELIEVIATKEPIRK--LDTYGKTIFASTQGHRMKVIDSSRTLKD-------------------IY------------R- 915 (1074)
Q Consensus 870 ~~~~~~~~h~~~V~s--~s~dg~~L~sgS~DgtI~VWDl~~~l~~-------------------l~------------~- 915 (1074)
+++ ...+|...|.| |.|..+.++++|-|.+|+|||+.+..+. +. +
T Consensus 127 ~ia-vltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGH 205 (1202)
T KOG0292|consen 127 CIA-VLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGH 205 (1202)
T ss_pred eEE-EEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeeccc
Confidence 766 55689999987 6777789999999999999998621100 11 1
Q ss_pred CCCeEEEEEeC--CEEEEEECCCcEEEEEccCCceeeeccccccccCCCCCeEEEEEcCCceEEEEEecCCCeEEEEECC
Q 001455 916 SKGIKSMSVVQ--GKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRH 993 (1074)
Q Consensus 916 ~~~V~sLa~sd--gkLlaGs~DgsI~IwDl~tg~~~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S~dDgtI~IWDl~ 993 (1074)
..+|.-++|.. .-+++|+.|..|++|.+...+.-.. .+..+|-+.|.++.|||....+++.+ +|++|++||+.
T Consensus 206 DRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEv----DtcrgH~nnVssvlfhp~q~lIlSns-EDksirVwDm~ 280 (1202)
T KOG0292|consen 206 DRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEV----DTCRGHYNNVSSVLFHPHQDLILSNS-EDKSIRVWDMT 280 (1202)
T ss_pred ccccceEEecCCcceEEecCCcceeeEEEeccccceee----hhhhcccCCcceEEecCccceeEecC-CCccEEEEecc
Confidence 23455566643 4478899999999999987554333 34578999999999999988888877 99999999999
Q ss_pred CCCeEEEccCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCcEEEEEe
Q 001455 994 RKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRIS 1044 (1074)
Q Consensus 994 t~~~i~~l~gH~~~VtsLafSPDG~~LaSGS~DGtIrIWDl~tg~~l~tL~ 1044 (1074)
..+.++++....+..+.++.+|..++++.|- |+-+.+|.++.-.+...+.
T Consensus 281 kRt~v~tfrrendRFW~laahP~lNLfAAgH-DsGm~VFkleRErpa~~v~ 330 (1202)
T KOG0292|consen 281 KRTSVQTFRRENDRFWILAAHPELNLFAAGH-DSGMIVFKLERERPAYAVN 330 (1202)
T ss_pred cccceeeeeccCCeEEEEEecCCcceeeeec-CCceEEEEEcccCceEEEc
Confidence 9999999988888999999999999988876 5557777766544444333
No 53
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.89 E-value=1.3e-21 Score=232.58 Aligned_cols=236 Identities=17% Similarity=0.241 Sum_probs=198.1
Q ss_pred CCCCCcEEEEEEe--CCEEEEEECCCcEEEEECCCCCeeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEccCC
Q 001455 791 HKCSGAVTALIYY--KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQR 868 (1074)
Q Consensus 791 ~gH~~~VtsLafS--~~~LaSGs~DGtVrIWDl~t~~~~~i~tl~gH~~~VtsLafSpdg~~LaSGS~DGtIrIWDl~tg 868 (1074)
.+|...|++++|+ +.++++|+.|++|+|||+... ...+.++++|...|++++|+|+|+.+++|+.|++|+|||++++
T Consensus 200 ~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~-~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~ 278 (456)
T KOG0266|consen 200 SGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDD-GRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTG 278 (456)
T ss_pred cccccceeeeEECCCCcEEEEecCCceEEEeeccCC-CeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCC
Confidence 5899999999999 448999999999999999433 2357899999999999999999999999999999999999998
Q ss_pred ceEEEEEeccCCCeEE--EccCCCeEEEEecCCeEEEEeCCCce----eeeec--CC-CeEEEEEe-CCE-EEEEECCCc
Q 001455 869 KLELIEVIATKEPIRK--LDTYGKTIFASTQGHRMKVIDSSRTL----KDIYR--SK-GIKSMSVV-QGK-IYIGCMDSS 937 (1074)
Q Consensus 869 ~~~~~~~~~h~~~V~s--~s~dg~~L~sgS~DgtI~VWDl~~~l----~~l~~--~~-~V~sLa~s-dgk-LlaGs~Dgs 937 (1074)
++.. ...+|..+|.+ |.++++.+++++.|+.|++||+.... ..+.. .. .++++.|+ ++. +++++.|+.
T Consensus 279 ~~~~-~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~ 357 (456)
T KOG0266|consen 279 ECVR-KLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRT 357 (456)
T ss_pred eEEE-eeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCe
Confidence 7544 56778888875 67999999999999999999998443 33333 22 57899996 666 777999999
Q ss_pred EEEEEccCCceeeeccccccccCCCC---CeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEccCC-CCCeEEEEE
Q 001455 938 IQELAVSNNVEREIKAPFKSWRLQSK---PINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEK-GTTIQAMAV 1013 (1074)
Q Consensus 938 I~IwDl~tg~~~~i~~~~r~~~~h~~---~I~sL~~spd~i~las~S~dDgtI~IWDl~t~~~i~~l~gH-~~~VtsLaf 1013 (1074)
+++||+..+...... .+|.. .+.+...++++.++.+++ .|+.|.+||..++..+..+.+| ...+..+.+
T Consensus 358 ~~~w~l~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~i~sg~-~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~ 430 (456)
T KOG0266|consen 358 LKLWDLRSGKSVGTY------TGHSNLVRCIFSPTLSTGGKLIYSGS-EDGSVYVWDSSSGGILQRLEGHSKAAVSDLSS 430 (456)
T ss_pred EEEEEccCCcceeee------cccCCcceeEecccccCCCCeEEEEe-CCceEEEEeCCccchhhhhcCCCCCceecccc
Confidence 999999987664433 33333 455566678899999887 8899999999999999999999 889999999
Q ss_pred ecCCCEEEEEE--CCCcEEEEECC
Q 001455 1014 VEDFIYLNYNS--SASSLQIWLRG 1035 (1074)
Q Consensus 1014 SPDG~~LaSGS--~DGtIrIWDl~ 1035 (1074)
+|...++++++ .|+.+++|...
T Consensus 431 ~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 431 HPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred CCCcCeeeecCcCCCceEEEecCC
Confidence 99999999998 78999999754
No 54
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=4.3e-21 Score=202.74 Aligned_cols=238 Identities=14% Similarity=0.140 Sum_probs=196.7
Q ss_pred eEEEEeccCCCCEEEEEEcCC-CCEEEEEeCCCeEEEEEccCC-ceEEE--EEeccCCCeEE--EccCCCeEEEEecCCe
Q 001455 827 MLVWDVKEHRKAVTSFSLFEP-GESLLSGSADKTIGVWQMVQR-KLELI--EVIATKEPIRK--LDTYGKTIFASTQGHR 900 (1074)
Q Consensus 827 ~~i~tl~gH~~~VtsLafSpd-g~~LaSGS~DGtIrIWDl~tg-~~~~~--~~~~h~~~V~s--~s~dg~~L~sgS~Dgt 900 (1074)
..++.+++|++.|..++|+|. |..|+|||.|+.||+|+...+ ...+. ...+|+..|.+ ++|+|+++++++.|.+
T Consensus 5 ~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t 84 (312)
T KOG0645|consen 5 ILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDAT 84 (312)
T ss_pred eeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccce
Confidence 346788999999999999998 888999999999999999842 23333 33478888886 5789999999999999
Q ss_pred EEEEeCC----CceeeeecC-CCeEEEEEe-CCE-EEEEECCCcEEEEEccCCceeeeccccccccCCCCCeEEEEEcCC
Q 001455 901 MKVIDSS----RTLKDIYRS-KGIKSMSVV-QGK-IYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKD 973 (1074)
Q Consensus 901 I~VWDl~----~~l~~l~~~-~~V~sLa~s-dgk-LlaGs~DgsI~IwDl~tg~~~~i~~~~r~~~~h~~~I~sL~~spd 973 (1074)
+.||.-. .+..++.++ ..|+|++|+ +|. +++++.|.+|-+|.+..+..... ...++.|...|..+.+||.
T Consensus 85 ~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec---~aVL~~HtqDVK~V~WHPt 161 (312)
T KOG0645|consen 85 VVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFEC---IAVLQEHTQDVKHVIWHPT 161 (312)
T ss_pred EEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEE---EeeeccccccccEEEEcCC
Confidence 9999866 455666654 459999998 666 55689999999999986554333 3567889999999999999
Q ss_pred ceEEEEEecCCCeEEEEECC---CCCeEEEccCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCcEEEEEeC-C-CC
Q 001455 974 WLYSASSSVEGSNIKEWRRH---RKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISA-G-SK 1048 (1074)
Q Consensus 974 ~i~las~S~dDgtI~IWDl~---t~~~i~~l~gH~~~VtsLafSPDG~~LaSGS~DGtIrIWDl~tg~~l~tL~~-h-s~ 1048 (1074)
.-.+++++ -|.+|++|+-. .-.+.+++.+|...|++++|+|.|..+++++.|++|+||... ..+.+ | .+
T Consensus 162 ~dlL~S~S-YDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~-----~~~~~~~sr~ 235 (312)
T KOG0645|consen 162 EDLLFSCS-YDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLY-----TDLSGMHSRA 235 (312)
T ss_pred cceeEEec-cCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeec-----cCcchhcccc
Confidence 88888888 56799999865 335789999999999999999999999999999999999855 22332 3 45
Q ss_pred eEEEEEcCCEEEEEECCCcEEEEec
Q 001455 1049 ITSLLTANDIVLCGTETGLIKGWIP 1073 (1074)
Q Consensus 1049 VtsLa~dg~~LaSGs~DG~IrIWdi 1073 (1074)
+..++|+...|+||+.|+.|++|..
T Consensus 236 ~Y~v~W~~~~IaS~ggD~~i~lf~~ 260 (312)
T KOG0645|consen 236 LYDVPWDNGVIASGGGDDAIRLFKE 260 (312)
T ss_pred eEeeeecccceEeccCCCEEEEEEe
Confidence 8889999889999999999999863
No 55
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.89 E-value=1.6e-22 Score=216.31 Aligned_cols=276 Identities=15% Similarity=0.159 Sum_probs=223.8
Q ss_pred CCCCcEEEEEEe--CCEEEEEECCCcEEEEECCCCCeeE------EEEeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEE
Q 001455 792 KCSGAVTALIYY--KGLLCSGFSDGSIKMWDIKKQSAML------VWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVW 863 (1074)
Q Consensus 792 gH~~~VtsLafS--~~~LaSGs~DGtVrIWDl~t~~~~~------i~tl~gH~~~VtsLafSpdg~~LaSGS~DGtIrIW 863 (1074)
|....+-|-.|+ ++++++|+.||.|.|||..+++... ...+.-|.++|.|++|+.|...+++|+.||.|++|
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvW 290 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVW 290 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEE
Confidence 456778899999 5599999999999999998886431 12334578999999999999999999999999999
Q ss_pred EccCCceEEEEEeccCCCeEE--EccCCCeEEEEecCCeEEEEeCC--CceeeeecCC-CeEEEEEe-CCE-EEEEECCC
Q 001455 864 QMVQRKLELIEVIATKEPIRK--LDTYGKTIFASTQGHRMKVIDSS--RTLKDIYRSK-GIKSMSVV-QGK-IYIGCMDS 936 (1074)
Q Consensus 864 Dl~tg~~~~~~~~~h~~~V~s--~s~dg~~L~sgS~DgtI~VWDl~--~~l~~l~~~~-~V~sLa~s-dgk-LlaGs~Dg 936 (1074)
.+.+|.+...+...|...|++ |+.++..+++++.|.++++.-+. +.++.+.++. .|+...|. +|. +++++.||
T Consensus 291 ri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDg 370 (508)
T KOG0275|consen 291 RIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDG 370 (508)
T ss_pred EEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCc
Confidence 999999988777789999987 67889999999999999999887 5666676654 58888896 665 88999999
Q ss_pred cEEEEEccCCceeeeccccccccCCCCCeEEEEEcCCce-EEEEEecCCCeEEEEECCCCCeEEEccC---CCCCeEEEE
Q 001455 937 SIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWL-YSASSSVEGSNIKEWRRHRKPQISIAPE---KGTTIQAMA 1012 (1074)
Q Consensus 937 sI~IwDl~tg~~~~i~~~~r~~~~h~~~I~sL~~spd~i-~las~S~dDgtI~IWDl~t~~~i~~l~g---H~~~VtsLa 1012 (1074)
+|++|+..++++...+.+ .+...+|+++..-|... .++.+. ..+++.+.++. |+.++.+.. .++...+.+
T Consensus 371 tvkvW~~KtteC~~Tfk~----~~~d~~vnsv~~~PKnpeh~iVCN-rsntv~imn~q-GQvVrsfsSGkREgGdFi~~~ 444 (508)
T KOG0275|consen 371 TVKVWHGKTTECLSTFKP----LGTDYPVNSVILLPKNPEHFIVCN-RSNTVYIMNMQ-GQVVRSFSSGKREGGDFINAI 444 (508)
T ss_pred cEEEecCcchhhhhhccC----CCCcccceeEEEcCCCCceEEEEc-CCCeEEEEecc-ceEEeeeccCCccCCceEEEE
Confidence 999999999887655433 23466788887776533 333333 56788888876 445555542 345677788
Q ss_pred EecCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCC-eEEEEE--cCCEEEEEECCCcEEEEec
Q 001455 1013 VVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAGSK-ITSLLT--ANDIVLCGTETGLIKGWIP 1073 (1074)
Q Consensus 1013 fSPDG~~LaSGS~DGtIrIWDl~tg~~l~tL~~hs~-VtsLa~--dg~~LaSGs~DG~IrIWdi 1073 (1074)
.||.|.++.+.++|+.++.|...+|+.-+++..|.+ |-.++- +.+.+++-+.||.+++|.|
T Consensus 445 lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWkp 508 (508)
T KOG0275|consen 445 LSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWKP 508 (508)
T ss_pred ecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccchhhhcCC
Confidence 999999999999999999999999999999999965 777774 4669999999999999985
No 56
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.89 E-value=6.8e-21 Score=221.96 Aligned_cols=273 Identities=22% Similarity=0.276 Sum_probs=219.7
Q ss_pred CCcEEEEEEeCC--EEEEEECCCcEEEEECCCCCeeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEccCCceE
Q 001455 794 SGAVTALIYYKG--LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLE 871 (1074)
Q Consensus 794 ~~~VtsLafS~~--~LaSGs~DGtVrIWDl~t~~~~~i~tl~gH~~~VtsLafSpdg~~LaSGS~DGtIrIWDl~tg~~~ 871 (1074)
..+|+|+.-+++ .+|.|..||.|+||+..+. ....++.||..+|+++.|...|..|+|||.|+.|.+||+-.. .-
T Consensus 65 k~evt~l~~~~d~l~lAVGYaDGsVqif~~~s~--~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E-~G 141 (888)
T KOG0306|consen 65 KAEVTCLRSSDDILLLAVGYADGSVQIFSLESE--EILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGE-EG 141 (888)
T ss_pred cceEEEeeccCCcceEEEEecCceEEeeccCCC--ceeeeecccccceEEEEEcccCceEeecCCCccEEEEEeccc-ee
Confidence 358999999854 4799999999999999977 447889999999999999999999999999999999999653 34
Q ss_pred EEEEeccCCCeEE--EccCCCeEEEEecCCeEEEEeCC--Cceeeeec-CCCeEEEEEeCCEEEEEECCCcEEEEEccCC
Q 001455 872 LIEVIATKEPIRK--LDTYGKTIFASTQGHRMKVIDSS--RTLKDIYR-SKGIKSMSVVQGKIYIGCMDSSIQELAVSNN 946 (1074)
Q Consensus 872 ~~~~~~h~~~V~s--~s~dg~~L~sgS~DgtI~VWDl~--~~l~~l~~-~~~V~sLa~sdgkLlaGs~DgsI~IwDl~tg 946 (1074)
.....+|++.|+. |....+.+++.+.|+.|++||+. .+..+... ...++.+++.+..+++++.|+.+.+|++...
T Consensus 142 l~rL~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~~~lvt~~~dse~~v~~L~~~ 221 (888)
T KOG0306|consen 142 LFRLRGHKDSITQALFLNGDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDEKLLVTAGTDSELKVWELAFE 221 (888)
T ss_pred eEEeecchHHHhHHhccCCCeEEEEeccCceEEEEecccceeeeEEecccceEEEEEEecceEEEEecCCceEEEEeecc
Confidence 5567899999986 45567899999999999999998 34444443 4558888888877888999999999988100
Q ss_pred ------------------------ceee----------------------------------------------------
Q 001455 947 ------------------------VERE---------------------------------------------------- 950 (1074)
Q Consensus 947 ------------------------~~~~---------------------------------------------------- 950 (1074)
+...
T Consensus 222 ~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~ 301 (888)
T KOG0306|consen 222 DDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENED 301 (888)
T ss_pred cccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhcccccccc
Confidence 0000
Q ss_pred ---------------ec------------------------------------ccc---------ccccCCCCCeEEEEE
Q 001455 951 ---------------IK------------------------------------APF---------KSWRLQSKPINSLVV 970 (1074)
Q Consensus 951 ---------------i~------------------------------------~~~---------r~~~~h~~~I~sL~~ 970 (1074)
++ .+. -.+.+|...|.++++
T Consensus 302 ~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~v 381 (888)
T KOG0306|consen 302 DVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCV 381 (888)
T ss_pred chhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEe
Confidence 00 000 012244555667777
Q ss_pred cCCceEEEEEecCCCeEEEEECCCCCeEEEccCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCcEEEEEeCC-CCe
Q 001455 971 YKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAG-SKI 1049 (1074)
Q Consensus 971 spd~i~las~S~dDgtI~IWDl~t~~~i~~l~gH~~~VtsLafSPDG~~LaSGS~DGtIrIWDl~tg~~l~tL~~h-s~V 1049 (1074)
+.+...+++++ ++.+++|+..+.++++++.. +.+.+..|-|.++++++|...|.+.+||+.+...+.++++| +.|
T Consensus 382 S~d~~~~~Sga--~~SikiWn~~t~kciRTi~~--~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaI 457 (888)
T KOG0306|consen 382 SSDSILLASGA--GESIKIWNRDTLKCIRTITC--GYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAI 457 (888)
T ss_pred ecCceeeeecC--CCcEEEEEccCcceeEEecc--ccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccce
Confidence 77777777664 67899999999999999843 48899999999999999999999999999999999999999 559
Q ss_pred EEEE--EcCCEEEEEECCCcEEEEec
Q 001455 1050 TSLL--TANDIVLCGTETGLIKGWIP 1073 (1074)
Q Consensus 1050 tsLa--~dg~~LaSGs~DG~IrIWdi 1073 (1074)
++++ +|+..+++||.|.+|++|+.
T Consensus 458 Wsi~~~pD~~g~vT~saDktVkfWdf 483 (888)
T KOG0306|consen 458 WSISLSPDNKGFVTGSADKTVKFWDF 483 (888)
T ss_pred eeeeecCCCCceEEecCCcEEEEEeE
Confidence 9876 67889999999999999984
No 57
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.89 E-value=2.2e-21 Score=207.38 Aligned_cols=262 Identities=14% Similarity=0.198 Sum_probs=201.0
Q ss_pred CCCCCcEEEEEEe---CCEEEEEECCCcEEEEECCCC-CeeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcc
Q 001455 791 HKCSGAVTALIYY---KGLLCSGFSDGSIKMWDIKKQ-SAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMV 866 (1074)
Q Consensus 791 ~gH~~~VtsLafS---~~~LaSGs~DGtVrIWDl~t~-~~~~i~tl~gH~~~VtsLafSpdg~~LaSGS~DGtIrIWDl~ 866 (1074)
..-.+.|.+|+|| ++++++||.||+||+|+++.. ... -.....|.++|.+++|+.||..+++|+.|+.+++||+.
T Consensus 24 ~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~-~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~ 102 (347)
T KOG0647|consen 24 NPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLV-PKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLA 102 (347)
T ss_pred CCcccchheeEeccccCceEEecccCCceEEEEEecCCccc-chhhhccCCCeEEEEEccCCceEEeeccCCceEEEEcc
Confidence 3457899999999 457889999999999999873 322 24456899999999999999999999999999999999
Q ss_pred CCceEEEEEeccCCCeEEEc--cC--CCeEEEEecCCeEEEEeCCC--ceeeeecCCCeEEEEEeCCEEEEEECCCcEEE
Q 001455 867 QRKLELIEVIATKEPIRKLD--TY--GKTIFASTQGHRMKVIDSSR--TLKDIYRSKGIKSMSVVQGKIYIGCMDSSIQE 940 (1074)
Q Consensus 867 tg~~~~~~~~~h~~~V~s~s--~d--g~~L~sgS~DgtI~VWDl~~--~l~~l~~~~~V~sLa~sdgkLlaGs~DgsI~I 940 (1074)
+++. ..+..|..+|.++. +. -..|++|++|.+|+.||++. .+.++.-...+.++..-...++.++.+..|.+
T Consensus 103 S~Q~--~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~v 180 (347)
T KOG0647|consen 103 SGQV--SQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAERHIAV 180 (347)
T ss_pred CCCe--eeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCceeEEEecCCcEEE
Confidence 9964 45677999988753 22 23789999999999999983 44445556677777666667788999999999
Q ss_pred EEccCCcee--eeccccccccCCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCC--CeEEEccCCC---------CC
Q 001455 941 LAVSNNVER--EIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRK--PQISIAPEKG---------TT 1007 (1074)
Q Consensus 941 wDl~tg~~~--~i~~~~r~~~~h~~~I~sL~~spd~i~las~S~dDgtI~IWDl~t~--~~i~~l~gH~---------~~ 1007 (1074)
|+++++... .+.. .-.-.+.+++.+++....+.++ -.|.+-+..++.+ ..-.++..|. ..
T Consensus 181 ynL~n~~te~k~~~S------pLk~Q~R~va~f~d~~~~alGs-iEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYa 253 (347)
T KOG0647|consen 181 YNLENPPTEFKRIES------PLKWQTRCVACFQDKDGFALGS-IEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYA 253 (347)
T ss_pred EEcCCCcchhhhhcC------cccceeeEEEEEecCCceEeee-ecceEEEEecCCCCccCceeEEEeccCCCCCCceEE
Confidence 999875431 1111 1245678888887755445455 3477888887765 3233444454 26
Q ss_pred eEEEEEecCCCEEEEEECCCcEEEEECCCCcEEEEEeCC-CCeEEEEEc--CCEEEEE
Q 001455 1008 IQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAG-SKITSLLTA--NDIVLCG 1062 (1074)
Q Consensus 1008 VtsLafSPDG~~LaSGS~DGtIrIWDl~tg~~l~tL~~h-s~VtsLa~d--g~~LaSG 1062 (1074)
|++++|+|.-..|+|+|.||++.+||.+....+.+.+.| .+|+|.+|+ |.+++.+
T Consensus 254 VNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA 311 (347)
T KOG0647|consen 254 VNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYA 311 (347)
T ss_pred ecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEE
Confidence 888999999999999999999999999998899998887 559998887 6665543
No 58
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.88 E-value=3.7e-21 Score=230.33 Aligned_cols=251 Identities=17% Similarity=0.236 Sum_probs=206.4
Q ss_pred cceeeEEEEee-cCCCCCcEEEEEEe--CCEEEEEECCCcEEEEECCCCCeeEEEEeccCCCCEEEEEEcCCCCEEEEEe
Q 001455 779 ISCVHTQILEA-SHKCSGAVTALIYY--KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGS 855 (1074)
Q Consensus 779 ~~~~~tl~le~-~~gH~~~VtsLafS--~~~LaSGs~DGtVrIWDl~t~~~~~i~tl~gH~~~VtsLafSpdg~~LaSGS 855 (1074)
|++...+.... ..||.+.|+++++. ++++++|+.|.+++|||..++.+ .+.+.+|.+.|.++.. .+..+++|+
T Consensus 233 ~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C--~~~l~gh~stv~~~~~--~~~~~~sgs 308 (537)
T KOG0274|consen 233 WDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGEC--THSLQGHTSSVRCLTI--DPFLLVSGS 308 (537)
T ss_pred eecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcE--EEEecCCCceEEEEEc--cCceEeecc
Confidence 44444444444 56999999999999 88999999999999999999976 7889999999999987 455688999
Q ss_pred CCCeEEEEEccCCceEEEEEeccCCCeEEEccCCCeEEEEecCCeEEEEeCC--Cceeeeec-CCCeEEEEEeC-CEEEE
Q 001455 856 ADKTIGVWQMVQRKLELIEVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSS--RTLKDIYR-SKGIKSMSVVQ-GKIYI 931 (1074)
Q Consensus 856 ~DGtIrIWDl~tg~~~~~~~~~h~~~V~s~s~dg~~L~sgS~DgtI~VWDl~--~~l~~l~~-~~~V~sLa~sd-gkLla 931 (1074)
.|.+|++|++.++.+.... .+|..+|.++..++..+++|+.|++|++||+. .++..+.+ ...|.++.+.. ..+++
T Consensus 309 ~D~tVkVW~v~n~~~l~l~-~~h~~~V~~v~~~~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~~~~~S 387 (537)
T KOG0274|consen 309 RDNTVKVWDVTNGACLNLL-RGHTGPVNCVQLDEPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSENRLLS 387 (537)
T ss_pred CCceEEEEeccCcceEEEe-ccccccEEEEEecCCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCcceEEe
Confidence 9999999999998765543 34999999999999999999999999999988 56666665 45699998876 88999
Q ss_pred EECCCcEEEEEccCCceeeeccccccccCCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEccC-CCCCeEE
Q 001455 932 GCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPE-KGTTIQA 1010 (1074)
Q Consensus 932 Gs~DgsI~IwDl~tg~~~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S~dDgtI~IWDl~t~~~i~~l~g-H~~~Vts 1010 (1074)
|+.|++|++||+.+.. .....+.+|...+..+.+. +.++++.+ .|++|++||..++.+.+.+.+ |...|..
T Consensus 388 gs~D~~IkvWdl~~~~-----~c~~tl~~h~~~v~~l~~~--~~~Lvs~~-aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~ 459 (537)
T KOG0274|consen 388 GSLDTTIKVWDLRTKR-----KCIHTLQGHTSLVSSLLLR--DNFLVSSS-ADGTIKLWDAEEGECLRTLEGRHVGGVSA 459 (537)
T ss_pred eeeccceEeecCCchh-----hhhhhhcCCcccccccccc--cceeEecc-ccccEEEeecccCceeeeeccCCcccEEE
Confidence 9999999999999962 2234556777777555543 34455554 688999999999999999988 6788888
Q ss_pred EEEecCCCEEEEEECCCcEEEEECCCCcEEEEEe
Q 001455 1011 MAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRIS 1044 (1074)
Q Consensus 1011 LafSPDG~~LaSGS~DGtIrIWDl~tg~~l~tL~ 1044 (1074)
+++. ...+++++.||++++||+++++.++++-
T Consensus 460 l~~~--~~~il~s~~~~~~~l~dl~~~~~~~~l~ 491 (537)
T KOG0274|consen 460 LALG--KEEILCSSDDGSVKLWDLRSGTLIRTLL 491 (537)
T ss_pred eecC--cceEEEEecCCeeEEEecccCchhhhhh
Confidence 8876 5678888999999999999999988773
No 59
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.88 E-value=2.4e-22 Score=209.62 Aligned_cols=250 Identities=16% Similarity=0.168 Sum_probs=212.7
Q ss_pred CCcccceeeEEEEeecCCCCCcEEEEEEeCC--EEEEEECCCcEEEEECCCCCeeEEEEeccCCCCEEEEEEcCCCCEEE
Q 001455 775 NISRISCVHTQILEASHKCSGAVTALIYYKG--LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLL 852 (1074)
Q Consensus 775 ~~~~~~~~~tl~le~~~gH~~~VtsLafS~~--~LaSGs~DGtVrIWDl~t~~~~~i~tl~gH~~~VtsLafSpdg~~La 852 (1074)
+..+..|+-++. ||.+.|++...+.+ .-|+++.|-+.+|||.-++.. ++.| .|+.-|.+++|+.|.++|+
T Consensus 45 ~g~tgdwigtfe-----ghkgavw~~~l~~na~~aasaaadftakvw~a~tgde--lhsf-~hkhivk~~af~~ds~~ll 116 (334)
T KOG0278|consen 45 NGDTGDWIGTFE-----GHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDE--LHSF-EHKHIVKAVAFSQDSNYLL 116 (334)
T ss_pred cCCCCCcEEeee-----ccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhh--hhhh-hhhheeeeEEecccchhhh
Confidence 344566888876 99999999999943 578999999999999998854 6666 7899999999999999999
Q ss_pred EEeCCCeEEEEEccCCceEEEEEeccCCCeEE--EccCCCeEEEEecCCeEEEEeCC--CceeeeecCCCeEEEEEe-CC
Q 001455 853 SGSADKTIGVWQMVQRKLELIEVIATKEPIRK--LDTYGKTIFASTQGHRMKVIDSS--RTLKDIYRSKGIKSMSVV-QG 927 (1074)
Q Consensus 853 SGS~DGtIrIWDl~tg~~~~~~~~~h~~~V~s--~s~dg~~L~sgS~DgtI~VWDl~--~~l~~l~~~~~V~sLa~s-dg 927 (1074)
||+.++.+||+|++..+-....+.+|...|.. |....+.+++.+.|++|++||.+ ...+.+....+|+++.++ +|
T Consensus 117 tgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG 196 (334)
T KOG0278|consen 117 TGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDG 196 (334)
T ss_pred ccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEecCCCCcceeeccCC
Confidence 99999999999999877667778889999986 45667788888999999999987 567778889999999998 99
Q ss_pred EEEEEECCCcEEEEEccCCceeeeccccccccCCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEc-cCCCC
Q 001455 928 KIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIA-PEKGT 1006 (1074)
Q Consensus 928 kLlaGs~DgsI~IwDl~tg~~~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S~dDgtI~IWDl~t~~~i~~l-~gH~~ 1006 (1074)
++++....+.|.+||..+-.....+ .-...|.+...+|+..+.++++ +|..++.||..++..+..+ .+|.+
T Consensus 197 ~ilTia~gssV~Fwdaksf~~lKs~-------k~P~nV~SASL~P~k~~fVaGg-ed~~~~kfDy~TgeEi~~~nkgh~g 268 (334)
T KOG0278|consen 197 RILTIAYGSSVKFWDAKSFGLLKSY-------KMPCNVESASLHPKKEFFVAGG-EDFKVYKFDYNTGEEIGSYNKGHFG 268 (334)
T ss_pred CEEEEecCceeEEeccccccceeec-------cCccccccccccCCCceEEecC-cceEEEEEeccCCceeeecccCCCC
Confidence 9999999999999999884432221 1255788888999887666665 8899999999999988875 89999
Q ss_pred CeEEEEEecCCCEEEEEECCCcEEEEECCCCcEE
Q 001455 1007 TIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKV 1040 (1074)
Q Consensus 1007 ~VtsLafSPDG~~LaSGS~DGtIrIWDl~tg~~l 1040 (1074)
+|.++.|+|||...++||+||+|++|....++.-
T Consensus 269 pVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 269 PVHCVRFSPDGELYASGSEDGTIRLWQTTPGKTY 302 (334)
T ss_pred ceEEEEECCCCceeeccCCCceEEEEEecCCCch
Confidence 9999999999999999999999999997776654
No 60
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=5.2e-20 Score=198.73 Aligned_cols=273 Identities=14% Similarity=0.158 Sum_probs=221.1
Q ss_pred CCCcEEEEEEe--CCEEEEEECCCcEEEEECCCCCeeEEEEeccCCCCEEEEEEcCCCCEEEEEeC--CCeEEEEEccCC
Q 001455 793 CSGAVTALIYY--KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSA--DKTIGVWQMVQR 868 (1074)
Q Consensus 793 H~~~VtsLafS--~~~LaSGs~DGtVrIWDl~t~~~~~i~tl~gH~~~VtsLafSpdg~~LaSGS~--DGtIrIWDl~tg 868 (1074)
-.+.|+++.|+ |..+++++.|.++++||..+++. ..++..++-.|..++|......++.++. |.+||.-++.++
T Consensus 13 ~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~--~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dN 90 (311)
T KOG1446|consen 13 TNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQ--VKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDN 90 (311)
T ss_pred CCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCce--eeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecC
Confidence 36899999999 55899999999999999998865 7788788889999999877777776666 899999999998
Q ss_pred ceEEEEEeccCCCeEEE--ccCCCeEEEEecCCeEEEEeCC-CceeeeecCCCeEEEEEe-CCEEEE-EECCCcEEEEEc
Q 001455 869 KLELIEVIATKEPIRKL--DTYGKTIFASTQGHRMKVIDSS-RTLKDIYRSKGIKSMSVV-QGKIYI-GCMDSSIQELAV 943 (1074)
Q Consensus 869 ~~~~~~~~~h~~~V~s~--s~dg~~L~sgS~DgtI~VWDl~-~~l~~l~~~~~V~sLa~s-dgkLla-Gs~DgsI~IwDl 943 (1074)
+..+ .+.+|...|.++ +|-++.+++++.|++|++||++ ...+.+....+-...+|. .|-+++ +...+.|++||+
T Consensus 91 kylR-YF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi~AfDp~GLifA~~~~~~~IkLyD~ 169 (311)
T KOG1446|consen 91 KYLR-YFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPIAAFDPEGLIFALANGSELIKLYDL 169 (311)
T ss_pred ceEE-EcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCcceeECCCCcEEEEecCCCeEEEEEe
Confidence 8654 778999999875 6888999999999999999998 333333333344456775 787766 555559999999
Q ss_pred cCCceeeecccccccc---CCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEccCCCCCe---EEEEEecCC
Q 001455 944 SNNVEREIKAPFKSWR---LQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTI---QAMAVVEDF 1017 (1074)
Q Consensus 944 ~tg~~~~i~~~~r~~~---~h~~~I~sL~~spd~i~las~S~dDgtI~IWDl~t~~~i~~l~gH~~~V---tsLafSPDG 1017 (1074)
+.-.... ...+. ......+.+.|+|+|.+++.+. ..+.+.+.|.-.|.....+.++...- .+.+|+||+
T Consensus 170 Rs~dkgP----F~tf~i~~~~~~ew~~l~FS~dGK~iLlsT-~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds 244 (311)
T KOG1446|consen 170 RSFDKGP----FTTFSITDNDEAEWTDLEFSPDGKSILLST-NASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDS 244 (311)
T ss_pred cccCCCC----ceeEccCCCCccceeeeEEcCCCCEEEEEe-CCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCC
Confidence 8743221 12222 3366788999999999988766 67789999999999888887776532 577899999
Q ss_pred CEEEEEECCCcEEEEECCCCcEEEEEeCC--CCeEEEEEcCCEEEEEECCCcEEEEec
Q 001455 1018 IYLNYNSSASSLQIWLRGTQQKVGRISAG--SKITSLLTANDIVLCGTETGLIKGWIP 1073 (1074)
Q Consensus 1018 ~~LaSGS~DGtIrIWDl~tg~~l~tL~~h--s~VtsLa~dg~~LaSGs~DG~IrIWdi 1073 (1074)
+++++|+.||+|.+|++++|..+..+.+. +++.++.|++++..-++.+..+.+|-|
T Consensus 245 ~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~s~l~fw~p 302 (311)
T KOG1446|consen 245 KFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSASSNLVFWLP 302 (311)
T ss_pred cEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecCceEEEEec
Confidence 99999999999999999999999999984 569999999998887888889999965
No 61
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=1.2e-21 Score=215.73 Aligned_cols=237 Identities=18% Similarity=0.227 Sum_probs=187.0
Q ss_pred ecCCCCCcEEEEEEe--CCEEEEEECCCcEEEEECCCCCeeEEEEe-ccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEc
Q 001455 789 ASHKCSGAVTALIYY--KGLLCSGFSDGSIKMWDIKKQSAMLVWDV-KEHRKAVTSFSLFEPGESLLSGSADKTIGVWQM 865 (1074)
Q Consensus 789 ~~~gH~~~VtsLafS--~~~LaSGs~DGtVrIWDl~t~~~~~i~tl-~gH~~~VtsLafSpdg~~LaSGS~DGtIrIWDl 865 (1074)
+..||..+|..|.|+ +.++++|+.|..+++||+.++... +.+ .+|...+.+++|.|||..+++|+.|+++..||+
T Consensus 264 tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~--~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdl 341 (519)
T KOG0293|consen 264 TLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLR--HLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDL 341 (519)
T ss_pred eeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhh--hhcccCcCCCcceeEEccCCceeEecCCCCcEEEecC
Confidence 334999999999999 568999999999999999999753 333 246689999999999999999999999999999
Q ss_pred cCCceEEEEEecc-CCCeE--EEccCCCeEEEEecCCeEEEEeCCC--ceeeeecCCCeEEEEEe-CCEEE-EEECCCcE
Q 001455 866 VQRKLELIEVIAT-KEPIR--KLDTYGKTIFASTQGHRMKVIDSSR--TLKDIYRSKGIKSMSVV-QGKIY-IGCMDSSI 938 (1074)
Q Consensus 866 ~tg~~~~~~~~~h-~~~V~--s~s~dg~~L~sgS~DgtI~VWDl~~--~l~~l~~~~~V~sLa~s-dgkLl-aGs~DgsI 938 (1074)
+..... ...+. ...|. +++++|.++++.+.|..|++|+... ....+..+.+|+++.++ +|+++ +.-.+..+
T Consensus 342 Dgn~~~--~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei 419 (519)
T KOG0293|consen 342 DGNILG--NWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEI 419 (519)
T ss_pred Ccchhh--cccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCee
Confidence 754321 11111 12344 4679999999999999999999873 23345668889999998 88855 46688999
Q ss_pred EEEEccCCceeeeccccccccCCCC---CeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEccCCCCCeEEEEEec
Q 001455 939 QELAVSNNVEREIKAPFKSWRLQSK---PINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVE 1015 (1074)
Q Consensus 939 ~IwDl~tg~~~~i~~~~r~~~~h~~---~I~sL~~spd~i~las~S~dDgtI~IWDl~t~~~i~~l~gH~~~VtsLafSP 1015 (1074)
++||+...... +.+.+|.. .|.+.-.-.+..++++++ +|+.|+||+..++.++..+.||...|++++|+|
T Consensus 420 ~LWDl~e~~lv------~kY~Ghkq~~fiIrSCFgg~~~~fiaSGS-ED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP 492 (519)
T KOG0293|consen 420 HLWDLEENKLV------RKYFGHKQGHFIIRSCFGGGNDKFIASGS-EDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNP 492 (519)
T ss_pred EEeecchhhHH------HHhhcccccceEEEeccCCCCcceEEecC-CCceEEEEEccCCceeEeecCCcceeeEEecCC
Confidence 99999964332 34455543 233333335557778777 899999999999999999999999999999999
Q ss_pred -CCCEEEEEECCCcEEEEECCC
Q 001455 1016 -DFIYLNYNSSASSLQIWLRGT 1036 (1074)
Q Consensus 1016 -DG~~LaSGS~DGtIrIWDl~t 1036 (1074)
|-.++||||.||+|+||....
T Consensus 493 ~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 493 ADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred CCHHHhhccCCCCeEEEecCCc
Confidence 567899999999999997653
No 62
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.87 E-value=6e-21 Score=204.08 Aligned_cols=238 Identities=11% Similarity=0.151 Sum_probs=190.2
Q ss_pred EEEEeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEccCCceEEEEEeccCCCeEE--EccCCCeEEEEecCCeEEEEe
Q 001455 828 LVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATKEPIRK--LDTYGKTIFASTQGHRMKVID 905 (1074)
Q Consensus 828 ~i~tl~gH~~~VtsLafSpdg~~LaSGS~DGtIrIWDl~tg~~~~~~~~~h~~~V~s--~s~dg~~L~sgS~DgtI~VWD 905 (1074)
++..+.+|++.|..+.|+|+|..|+|||.|..|.+|++.....-.....+|++.|.. +..+++.+++++.|.+++.||
T Consensus 39 p~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD 118 (338)
T KOG0265|consen 39 PIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWD 118 (338)
T ss_pred hhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEe
Confidence 455678999999999999999999999999999999976543334455689999986 568999999999999999999
Q ss_pred CCC--ceeeeecCC-CeEEEEEe--CCEEE-EEECCCcEEEEEccCCceeeeccccccccCCCCCeEEEEEcCCceEEEE
Q 001455 906 SSR--TLKDIYRSK-GIKSMSVV--QGKIY-IGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSAS 979 (1074)
Q Consensus 906 l~~--~l~~l~~~~-~V~sLa~s--dgkLl-aGs~DgsI~IwDl~tg~~~~i~~~~r~~~~h~~~I~sL~~spd~i~las 979 (1074)
+.. ..+....+. -|..+... +-.++ +|+.|+++++||+++......+ .....++++.|...+..+.+
T Consensus 119 ~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~-------~~kyqltAv~f~d~s~qv~s 191 (338)
T KOG0265|consen 119 AETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTF-------ENKYQLTAVGFKDTSDQVIS 191 (338)
T ss_pred cccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhcc-------ccceeEEEEEecccccceee
Confidence 983 333343333 36666633 33355 4899999999999974433221 22567899999988888887
Q ss_pred EecCCCeEEEEECCCCCeEEEccCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCC----cEEEEEeCCCC-----eE
Q 001455 980 SSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQ----QKVGRISAGSK-----IT 1050 (1074)
Q Consensus 980 ~S~dDgtI~IWDl~t~~~i~~l~gH~~~VtsLafSPDG~~LaSGS~DGtIrIWDl~tg----~~l~tL~~hs~-----Vt 1050 (1074)
++ -|+.|++||++.+....++.||.++|+.+..+|+|.++.+-+.|.++++||++.. .++..+.+|.. ..
T Consensus 192 gg-Idn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL 270 (338)
T KOG0265|consen 192 GG-IDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLL 270 (338)
T ss_pred cc-ccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcc
Confidence 76 5688999999999999999999999999999999999999999999999997653 34788887721 23
Q ss_pred EEEE--cCCEEEEEECCCcEEEEec
Q 001455 1051 SLLT--ANDIVLCGTETGLIKGWIP 1073 (1074)
Q Consensus 1051 sLa~--dg~~LaSGs~DG~IrIWdi 1073 (1074)
..+| +++.+.+|+.|..+++||.
T Consensus 271 ~cswsp~~~~i~ags~dr~vyvwd~ 295 (338)
T KOG0265|consen 271 KCSWSPNGTKITAGSADRFVYVWDT 295 (338)
T ss_pred eeeccCCCCccccccccceEEEeec
Confidence 3444 4779999999999999984
No 63
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=5.2e-21 Score=198.41 Aligned_cols=236 Identities=14% Similarity=0.156 Sum_probs=194.7
Q ss_pred EEEeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEccCCceEEEEEeccCCCeEE--EccCCCeEEEEecCCeEEEEeC
Q 001455 829 VWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATKEPIRK--LDTYGKTIFASTQGHRMKVIDS 906 (1074)
Q Consensus 829 i~tl~gH~~~VtsLafSpdg~~LaSGS~DGtIrIWDl~tg~~~~~~~~~h~~~V~s--~s~dg~~L~sgS~DgtI~VWDl 906 (1074)
...+.+|.++|..+.|+-+|++.++++.|++|++|+...|.++. ...+|...|.. .+.++..+++++.|..+.+||+
T Consensus 10 ~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~lik-tYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV 88 (307)
T KOG0316|consen 10 LSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIK-TYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDV 88 (307)
T ss_pred ceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceee-eecCCCceeeeccccccccccccCCCCceEEEEEc
Confidence 56778999999999999999999999999999999999987654 45678888875 5688889999999999999999
Q ss_pred C--CceeeeecC-CCeEEEEEe-CCE-EEEEECCCcEEEEEccCCceeeeccccccccCCCCCeEEEEEcCCceEEEEEe
Q 001455 907 S--RTLKDIYRS-KGIKSMSVV-QGK-IYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSS 981 (1074)
Q Consensus 907 ~--~~l~~l~~~-~~V~sLa~s-dgk-LlaGs~DgsI~IwDl~tg~~~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S 981 (1074)
+ +..+.+.++ ..|..+.|. +.. +++|+-|.++++||-++.... |++.+......|.++......+ ++++
T Consensus 89 ~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~e----PiQildea~D~V~Si~v~~heI--vaGS 162 (307)
T KOG0316|consen 89 NTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFE----PIQILDEAKDGVSSIDVAEHEI--VAGS 162 (307)
T ss_pred ccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCC----ccchhhhhcCceeEEEecccEE--Eeec
Confidence 8 345555554 469999997 444 667999999999999986543 3456666678888888876554 3344
Q ss_pred cCCCeEEEEECCCCCeEEEccCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCC----eEE-EEEcC
Q 001455 982 VEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAGSK----ITS-LLTAN 1056 (1074)
Q Consensus 982 ~dDgtI~IWDl~t~~~i~~l~gH~~~VtsLafSPDG~~LaSGS~DGtIrIWDl~tg~~l~tL~~hs~----Vts-La~dg 1056 (1074)
.||+++.||++.|.....+.+ .+|+++.|++||+....++-|+++++.|..+|+.+..+++|.. +.| +.-+.
T Consensus 163 -~DGtvRtydiR~G~l~sDy~g--~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsd 239 (307)
T KOG0316|consen 163 -VDGTVRTYDIRKGTLSSDYFG--HPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSD 239 (307)
T ss_pred -cCCcEEEEEeecceeehhhcC--CcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccc
Confidence 689999999999987766644 4799999999999999999999999999999999999999932 443 33346
Q ss_pred CEEEEEECCCcEEEEecC
Q 001455 1057 DIVLCGTETGLIKGWIPL 1074 (1074)
Q Consensus 1057 ~~LaSGs~DG~IrIWdil 1074 (1074)
..+++|+.||.|++||.+
T Consensus 240 thV~sgSEDG~Vy~wdLv 257 (307)
T KOG0316|consen 240 THVFSGSEDGKVYFWDLV 257 (307)
T ss_pred eeEEeccCCceEEEEEec
Confidence 699999999999999964
No 64
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.87 E-value=8.6e-21 Score=207.84 Aligned_cols=247 Identities=15% Similarity=0.214 Sum_probs=201.1
Q ss_pred ceeeEEEEeecCCCCCcEEEEEEe--CC---EEEEEECCCcEEEEECCCCCee--EEEEeccCCCCEEEEEEcCCCCEEE
Q 001455 780 SCVHTQILEASHKCSGAVTALIYY--KG---LLCSGFSDGSIKMWDIKKQSAM--LVWDVKEHRKAVTSFSLFEPGESLL 852 (1074)
Q Consensus 780 ~~~~tl~le~~~gH~~~VtsLafS--~~---~LaSGs~DGtVrIWDl~t~~~~--~i~tl~gH~~~VtsLafSpdg~~La 852 (1074)
.+.++.. ||.++|.+++|. +. .|+++|.|.++++|..+.+... .+..-+||..+|-+++..++|..++
T Consensus 135 k~~~~~~-----Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~ 209 (423)
T KOG0313|consen 135 KSIKTIV-----GHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFC 209 (423)
T ss_pred ceEEEEe-----cCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEE
Confidence 3555555 999999999998 33 5999999999999998876532 2233349999999999999999999
Q ss_pred EEeCCCeEEEEEccCCc------------------------eEEEEEeccCCCeEEEc-cCCCeEEEEecCCeEEEEeCC
Q 001455 853 SGSADKTIGVWQMVQRK------------------------LELIEVIATKEPIRKLD-TYGKTIFASTQGHRMKVIDSS 907 (1074)
Q Consensus 853 SGS~DGtIrIWDl~tg~------------------------~~~~~~~~h~~~V~s~s-~dg~~L~sgS~DgtI~VWDl~ 907 (1074)
|||.|.+++||+..+.. .......+|..+|.++- ++...++++++|++|++||+.
T Consensus 210 SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDle 289 (423)
T KOG0313|consen 210 SGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDATVIYSVSWDHTIKVWDLE 289 (423)
T ss_pred eecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcCCCceEeecccceEEEEEee
Confidence 99999999999932210 02344568888888753 447789999999999999987
Q ss_pred --CceeeeecCCCeEEEEEe-C-CEEEEEECCCcEEEEEccCCceeeeccccccccCCCCCeEEEEEcCCceEEEEEecC
Q 001455 908 --RTLKDIYRSKGIKSMSVV-Q-GKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVE 983 (1074)
Q Consensus 908 --~~l~~l~~~~~V~sLa~s-d-gkLlaGs~DgsI~IwDl~tg~~~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S~d 983 (1074)
+....+..++...|+.+. . ..+++|+.|..+++||.+++.-... ...+.+|...|.++.++|...+.+..+..
T Consensus 290 tg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v---~~s~~gH~nwVssvkwsp~~~~~~~S~S~ 366 (423)
T KOG0313|consen 290 TGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVV---SQSLIGHKNWVSSVKWSPTNEFQLVSGSY 366 (423)
T ss_pred cccceeeeecCcceeEeecccccceeeecCCCCceeecCCCCCCCcee---EEeeecchhhhhheecCCCCceEEEEEec
Confidence 566777788899999996 3 4477799999999999998754332 25678999999999999988777766668
Q ss_pred CCeEEEEECCCCC-eEEEccCCCCCeEEEEEecCCCEEEEEECCCcEEEEECC
Q 001455 984 GSNIKEWRRHRKP-QISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRG 1035 (1074)
Q Consensus 984 DgtI~IWDl~t~~-~i~~l~gH~~~VtsLafSPDG~~LaSGS~DGtIrIWDl~ 1035 (1074)
|+++++||.++.. .+..+.+|...|.++.|. ++.+|++||.|++|+|+...
T Consensus 367 D~t~klWDvRS~k~plydI~~h~DKvl~vdW~-~~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 367 DNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN-EGGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred CCeEEEEEeccCCCcceeeccCCceEEEEecc-CCceEEeccCcceEEEeccc
Confidence 9999999987765 888999999999999998 57789999999999998643
No 65
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=6.7e-21 Score=199.62 Aligned_cols=269 Identities=11% Similarity=0.130 Sum_probs=203.9
Q ss_pred EEEEEe---CCEEEEEE-------CCCcEEEEECCCCCe-eEEEEeccCCCCEEEEEEcCCCCE-EEEEeCCCeEEEEEc
Q 001455 798 TALIYY---KGLLCSGF-------SDGSIKMWDIKKQSA-MLVWDVKEHRKAVTSFSLFEPGES-LLSGSADKTIGVWQM 865 (1074)
Q Consensus 798 tsLafS---~~~LaSGs-------~DGtVrIWDl~t~~~-~~i~tl~gH~~~VtsLafSpdg~~-LaSGS~DGtIrIWDl 865 (1074)
.++.|+ +++||.+. ..|++.|-++..+.. .....+ .-.+.+..++|+++... +++++.||++++||+
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~-d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~ 90 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSY-DTEDGLFDVAWSENHENQVIAASGDGSLRLFDL 90 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEee-ecccceeEeeecCCCcceEEEEecCceEEEecc
Confidence 467777 56655443 468999999964432 223333 34678999999997665 789999999999997
Q ss_pred cCCceEEEEEeccCCCeEEEcc---CCCeEEEEecCCeEEEEeCC--CceeeeecCC-CeEEEEEe---CCEEEEEECCC
Q 001455 866 VQRKLELIEVIATKEPIRKLDT---YGKTIFASTQGHRMKVIDSS--RTLKDIYRSK-GIKSMSVV---QGKIYIGCMDS 936 (1074)
Q Consensus 866 ~tg~~~~~~~~~h~~~V~s~s~---dg~~L~sgS~DgtI~VWDl~--~~l~~l~~~~-~V~sLa~s---dgkLlaGs~Dg 936 (1074)
............|+..|.+++. .+..++++++|++|++|+.. ..+.++.++. .|....|+ .+-+++++.|+
T Consensus 91 ~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~ 170 (311)
T KOG0277|consen 91 TMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDG 170 (311)
T ss_pred CCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCc
Confidence 5544444456688999998864 45578888999999999988 4555665544 47888885 34466799999
Q ss_pred cEEEEEccCCceeeeccccccccCCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCC-CCeEEEccCCCCCeEEEEEec
Q 001455 937 SIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHR-KPQISIAPEKGTTIQAMAVVE 1015 (1074)
Q Consensus 937 sI~IwDl~tg~~~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S~dDgtI~IWDl~t-~~~i~~l~gH~~~VtsLafSP 1015 (1074)
++++||++...... .+..|...|.+..++.-...++..+..|+.|+.||++. ...+..+.+|+-.|+.+.|||
T Consensus 171 ~l~lwdvr~~gk~~------~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sp 244 (311)
T KOG0277|consen 171 TLRLWDVRSPGKFM------SIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSP 244 (311)
T ss_pred eEEEEEecCCCcee------EEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCc
Confidence 99999998642211 13567788999999876665555555889999999765 456778899999999999999
Q ss_pred C-CCEEEEEECCCcEEEEECCCCc-EEEEEeCCCC-eEEEEEc---CCEEEEEECCCcEEEEec
Q 001455 1016 D-FIYLNYNSSASSLQIWLRGTQQ-KVGRISAGSK-ITSLLTA---NDIVLCGTETGLIKGWIP 1073 (1074)
Q Consensus 1016 D-G~~LaSGS~DGtIrIWDl~tg~-~l~tL~~hs~-VtsLa~d---g~~LaSGs~DG~IrIWdi 1073 (1074)
. ...|+|++.|-+++|||...+. .+.+...|+. |..+.|+ +.++|+.+.|+.++||+|
T Consensus 245 h~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 245 HHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred chhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 5 4688999999999999987544 4667777766 6667765 779999999999999995
No 66
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=5.6e-21 Score=226.93 Aligned_cols=240 Identities=17% Similarity=0.184 Sum_probs=187.6
Q ss_pred CCCCcEEEEEEe--CCEEEEEECCCcEEEEECCC--------------------------------CC------------
Q 001455 792 KCSGAVTALIYY--KGLLCSGFSDGSIKMWDIKK--------------------------------QS------------ 825 (1074)
Q Consensus 792 gH~~~VtsLafS--~~~LaSGs~DGtVrIWDl~t--------------------------------~~------------ 825 (1074)
.|.+.|+++.|+ |.|||+||.||.|+||.+.. ..
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 899999999999 56999999999999998754 00
Q ss_pred --------------eeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEccCCceEEEEEeccCCCeEEEc---cC
Q 001455 826 --------------AMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATKEPIRKLD---TY 888 (1074)
Q Consensus 826 --------------~~~i~tl~gH~~~VtsLafSpdg~~LaSGS~DGtIrIWDl~tg~~~~~~~~~h~~~V~s~s---~d 888 (1074)
.++++.+.||.+.|..+.|+.++ +|+|+|.|+|||+|++....+ .....|.+.|+|+. .+
T Consensus 345 s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~C--L~~F~HndfVTcVaFnPvD 421 (712)
T KOG0283|consen 345 SPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKEC--LKVFSHNDFVTCVAFNPVD 421 (712)
T ss_pred CccccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCcce--eeEEecCCeeEEEEecccC
Confidence 02456678999999999998755 799999999999999987654 45677999999864 35
Q ss_pred CCeEEEEecCCeEEEEeCCCceeeeec--CCCeEEEEEe-CCE-EEEEECCCcEEEEEccCCceeeeccc--cccccCCC
Q 001455 889 GKTIFASTQGHRMKVIDSSRTLKDIYR--SKGIKSMSVV-QGK-IYIGCMDSSIQELAVSNNVEREIKAP--FKSWRLQS 962 (1074)
Q Consensus 889 g~~L~sgS~DgtI~VWDl~~~l~~l~~--~~~V~sLa~s-dgk-LlaGs~DgsI~IwDl~tg~~~~i~~~--~r~~~~h~ 962 (1074)
.+++++|+-|+.|++|++.......+. ..-|++++|. +|+ .++|+.+|.+++|+....+....... .+.-+...
T Consensus 422 DryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~ 501 (712)
T KOG0283|consen 422 DRYFISGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQG 501 (712)
T ss_pred CCcEeecccccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccC
Confidence 679999999999999999865544443 5669999995 888 66799999999999987654321100 00011223
Q ss_pred CCeEEEEEcCCce--EEEEEecCCCeEEEEECCCCCeEEEccCCCC--CeEEEEEecCCCEEEEEECCCcEEEEECCC
Q 001455 963 KPINSLVVYKDWL--YSASSSVEGSNIKEWRRHRKPQISIAPEKGT--TIQAMAVVEDFIYLNYNSSASSLQIWLRGT 1036 (1074)
Q Consensus 963 ~~I~sL~~spd~i--~las~S~dDgtI~IWDl~t~~~i~~l~gH~~--~VtsLafSPDG~~LaSGS~DGtIrIWDl~t 1036 (1074)
..|+.+.+.|... .+++. .|..|+|+|.+...++..++|+.. .=....|+.||++|++|++|..|+||+...
T Consensus 502 ~rITG~Q~~p~~~~~vLVTS--nDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~ 577 (712)
T KOG0283|consen 502 KRITGLQFFPGDPDEVLVTS--NDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDS 577 (712)
T ss_pred ceeeeeEecCCCCCeEEEec--CCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCC
Confidence 4899999997654 45544 588999999988888888887644 334567899999999999999999999633
No 67
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.86 E-value=4.6e-20 Score=198.21 Aligned_cols=262 Identities=12% Similarity=0.122 Sum_probs=204.2
Q ss_pred CCCCcEEEEEEe--CCEEEEEECCCcEEEEECCCCCeeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEccCCc
Q 001455 792 KCSGAVTALIYY--KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRK 869 (1074)
Q Consensus 792 gH~~~VtsLafS--~~~LaSGs~DGtVrIWDl~t~~~~~i~tl~gH~~~VtsLafSpdg~~LaSGS~DGtIrIWDl~tg~ 869 (1074)
.-.+.|++|.|+ ++.|+++++||++++||+..... ...+ .|..++.+++|.+ ...+++|+.||.|+.+|+.++.
T Consensus 11 pP~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l--~~~~-~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~ 86 (323)
T KOG1036|consen 11 PPEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSL--KLKF-KHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGN 86 (323)
T ss_pred CChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhh--hhhe-ecCCceeeeeccC-CceEEEeccCceEEEEEecCCc
Confidence 346889999999 56788888999999999987643 2333 6899999999976 5568999999999999999986
Q ss_pred eEEEEEeccCCCeEEEc--cCCCeEEEEecCCeEEEEeCCC--ceeeeecCCCeEEEEEeCCEEEEEECCCcEEEEEccC
Q 001455 870 LELIEVIATKEPIRKLD--TYGKTIFASTQGHRMKVIDSSR--TLKDIYRSKGIKSMSVVQGKIYIGCMDSSIQELAVSN 945 (1074)
Q Consensus 870 ~~~~~~~~h~~~V~s~s--~dg~~L~sgS~DgtI~VWDl~~--~l~~l~~~~~V~sLa~sdgkLlaGs~DgsI~IwDl~t 945 (1074)
. .....|..+|.++. +....+++|++|++|++||.+. ....+...+.|.++...+++++.|+.|..+.+||+++
T Consensus 87 ~--~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v~g~~LvVg~~~r~v~iyDLRn 164 (323)
T KOG1036|consen 87 E--DQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDVSGNRLVVGTSDRKVLIYDLRN 164 (323)
T ss_pred c--eeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccCceEEEEeccCCEEEEeecCceEEEEEccc
Confidence 4 34567899999875 5588999999999999999984 2333444667999999999999999999999999998
Q ss_pred CceeeeccccccccCCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCC----CeEEEccCCCC---------CeEEEE
Q 001455 946 NVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRK----PQISIAPEKGT---------TIQAMA 1012 (1074)
Q Consensus 946 g~~~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S~dDgtI~IWDl~t~----~~i~~l~gH~~---------~VtsLa 1012 (1074)
........ -..-+-.+.+++..|++.-.+.++ -+|.|.+=.++.. .....|..|.. +|++++
T Consensus 165 ~~~~~q~r----eS~lkyqtR~v~~~pn~eGy~~sS-ieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~ 239 (323)
T KOG1036|consen 165 LDEPFQRR----ESSLKYQTRCVALVPNGEGYVVSS-IEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIA 239 (323)
T ss_pred ccchhhhc----cccceeEEEEEEEecCCCceEEEe-ecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeE
Confidence 54322111 122256788898888655444444 4677766555443 22334555542 899999
Q ss_pred EecCCCEEEEEECCCcEEEEECCCCcEEEEEeCC-CCeEEEEEc--CCEEEEEEC
Q 001455 1013 VVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAG-SKITSLLTA--NDIVLCGTE 1064 (1074)
Q Consensus 1013 fSPDG~~LaSGS~DGtIrIWDl~tg~~l~tL~~h-s~VtsLa~d--g~~LaSGs~ 1064 (1074)
|+|-...++||+.||.|.+||..+.+.+..+... +.|.+++|+ |..||.|+.
T Consensus 240 Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 240 FHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred eccccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence 9999999999999999999999999999988876 558888886 779998875
No 68
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=3.4e-20 Score=215.65 Aligned_cols=265 Identities=14% Similarity=0.216 Sum_probs=213.8
Q ss_pred EEEe-CCEEEEEECCCcEEEEECCCCCeeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEccCCceEEEEEecc
Q 001455 800 LIYY-KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIAT 878 (1074)
Q Consensus 800 LafS-~~~LaSGs~DGtVrIWDl~t~~~~~i~tl~gH~~~VtsLafSpdg~~LaSGS~DGtIrIWDl~tg~~~~~~~~~h 878 (1074)
++|+ .+.||.|. +..|++|+..++....+..+ +...|+++.|+++|.+|+.|..+|.|.|||..+.+........|
T Consensus 183 ldWss~n~laVal-g~~vylW~~~s~~v~~l~~~--~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h 259 (484)
T KOG0305|consen 183 LDWSSANVLAVAL-GQSVYLWSASSGSVTELCSF--GEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSH 259 (484)
T ss_pred hhcccCCeEEEEe-cceEEEEecCCCceEEeEec--CCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCc
Confidence 5566 44555554 45799999999876555554 38899999999999999999999999999998876555554558
Q ss_pred CCCeEEEccCCCeEEEEecCCeEEEEeCCCc---eeeee-cCCCeEEEEEe-CCE-EEEEECCCcEEEEEccCCceeeec
Q 001455 879 KEPIRKLDTYGKTIFASTQGHRMKVIDSSRT---LKDIY-RSKGIKSMSVV-QGK-IYIGCMDSSIQELAVSNNVEREIK 952 (1074)
Q Consensus 879 ~~~V~s~s~dg~~L~sgS~DgtI~VWDl~~~---l~~l~-~~~~V~sLa~s-dgk-LlaGs~DgsI~IwDl~tg~~~~i~ 952 (1074)
...|-++++.+..+.+|+.++.|..+|++.. ...+. +...|..+.|+ ++. +++|+.|+.+.|||.....
T Consensus 260 ~~rvg~laW~~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~----- 334 (484)
T KOG0305|consen 260 ASRVGSLAWNSSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPE----- 334 (484)
T ss_pred CceeEEEeccCceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCcc-----
Confidence 9999999999999999999999999999832 22233 34569999997 665 6679999999999995532
Q ss_pred cccccccCCCCCeEEEEEcCC--ceEEEEEecCCCeEEEEECCCCCeEEEccCCCCCeEEEEEecCCCEEEEE--ECCCc
Q 001455 953 APFKSWRLQSKPINSLVVYKD--WLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYN--SSASS 1028 (1074)
Q Consensus 953 ~~~r~~~~h~~~I~sL~~spd--~i~las~S~dDgtI~IWDl~t~~~i~~l~gH~~~VtsLafSPDG~~LaSG--S~DGt 1028 (1074)
+...+..|...|..++|+|- +....+++..|+.|++||..++..+... ..+..|.++.|++..+-|+++ ..++.
T Consensus 335 -p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~v-dtgsQVcsL~Wsk~~kEi~sthG~s~n~ 412 (484)
T KOG0305|consen 335 -PKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSV-DTGSQVCSLIWSKKYKELLSTHGYSENQ 412 (484)
T ss_pred -ccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEeccc-ccCCceeeEEEcCCCCEEEEecCCCCCc
Confidence 23455788999999999874 5555555668899999999999988766 455679999999988766664 36789
Q ss_pred EEEEECCCCcEEEEEeCC-CCeEEEEE--cCCEEEEEECCCcEEEEecC
Q 001455 1029 LQIWLRGTQQKVGRISAG-SKITSLLT--ANDIVLCGTETGLIKGWIPL 1074 (1074)
Q Consensus 1029 IrIWDl~tg~~l~tL~~h-s~VtsLa~--dg~~LaSGs~DG~IrIWdil 1074 (1074)
|.||+..+.+.+..+.+| ..|..+++ +|..+++|+.|.++++|+++
T Consensus 413 i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f 461 (484)
T KOG0305|consen 413 ITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLF 461 (484)
T ss_pred EEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEecccc
Confidence 999999999999999999 45888775 57799999999999999874
No 69
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.86 E-value=9.4e-20 Score=199.08 Aligned_cols=232 Identities=14% Similarity=0.191 Sum_probs=186.4
Q ss_pred CCCCcEEEEEEe--CCEEEEEECCCcEEEEECCCCCeeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEccCCc
Q 001455 792 KCSGAVTALIYY--KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRK 869 (1074)
Q Consensus 792 gH~~~VtsLafS--~~~LaSGs~DGtVrIWDl~t~~~~~i~tl~gH~~~VtsLafSpdg~~LaSGS~DGtIrIWDl~tg~ 869 (1074)
+|.+.|+++.|+ +.+||||+-+|.|+||+..++.. ...+.+.-+.|.-+.|+|.+..|+.|+.||.+..|.+.++.
T Consensus 104 gHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~--~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~ 181 (399)
T KOG0296|consen 104 GHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGE--QWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQA 181 (399)
T ss_pred CCCCceEEEEEccCceEEEecCCCccEEEEEcccCce--EEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcc
Confidence 899999999999 56899999999999999998854 45555566788999999999999999999999999998863
Q ss_pred eEEEEEeccCCCeEE--EccCCCeEEEEecCCeEEEEeCCCc--eeeee---------------------cC--------
Q 001455 870 LELIEVIATKEPIRK--LDTYGKTIFASTQGHRMKVIDSSRT--LKDIY---------------------RS-------- 916 (1074)
Q Consensus 870 ~~~~~~~~h~~~V~s--~s~dg~~L~sgS~DgtI~VWDl~~~--l~~l~---------------------~~-------- 916 (1074)
.+....+|..++++ |.|+|+.++++..||+|++||+... ...+. ..
T Consensus 182 -~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~ 260 (399)
T KOG0296|consen 182 -LCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGV 260 (399)
T ss_pred -eeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEE
Confidence 56677889999986 8999999999999999999998621 11111 00
Q ss_pred -----------------------CCeEEEEEe--CC--EE-EEEECCCcEEEEEccCCceeeeccccccccCCCCCeEEE
Q 001455 917 -----------------------KGIKSMSVV--QG--KI-YIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSL 968 (1074)
Q Consensus 917 -----------------------~~V~sLa~s--dg--kL-laGs~DgsI~IwDl~tg~~~~i~~~~r~~~~h~~~I~sL 968 (1074)
..+.|+.+. .. .+ ++|+-||+|.+||+...... ....|..+|..+
T Consensus 261 ~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R-------~~c~he~~V~~l 333 (399)
T KOG0296|consen 261 NNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLR-------HICEHEDGVTKL 333 (399)
T ss_pred ccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhh-------eeccCCCceEEE
Confidence 001112221 11 12 34777999999999885543 335678889999
Q ss_pred EEcCCceEEEEEecCCCeEEEEECCCCCeEEEccCCCCCeEEEEEecCCCEEEEEECCCcEEEEECC
Q 001455 969 VVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRG 1035 (1074)
Q Consensus 969 ~~spd~i~las~S~dDgtI~IWDl~t~~~i~~l~gH~~~VtsLafSPDG~~LaSGS~DGtIrIWDl~ 1035 (1074)
.|-+ ..++++++ .+|.|+.||.++|++..++.||...|.+++++|++++++|+|.|++.+||+..
T Consensus 334 ~w~~-t~~l~t~c-~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 334 KWLN-TDYLLTAC-ANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred EEcC-cchheeec-cCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 9998 44455444 57999999999999999999999999999999999999999999999999864
No 70
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.86 E-value=2.8e-20 Score=209.49 Aligned_cols=276 Identities=17% Similarity=0.188 Sum_probs=205.3
Q ss_pred CCCCcEEEEEEe--CCEEEEEECCCcEEEEECCCCCee--EEEEec-cCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcc
Q 001455 792 KCSGAVTALIYY--KGLLCSGFSDGSIKMWDIKKQSAM--LVWDVK-EHRKAVTSFSLFEPGESLLSGSADKTIGVWQMV 866 (1074)
Q Consensus 792 gH~~~VtsLafS--~~~LaSGs~DGtVrIWDl~t~~~~--~i~tl~-gH~~~VtsLafSpdg~~LaSGS~DGtIrIWDl~ 866 (1074)
+|+..|+++++. |-.|+|||.|.+|++||+...... ..+.+. .....|.++.|++.|..|++.+.....+++|-.
T Consensus 165 hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRd 244 (641)
T KOG0772|consen 165 HGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRD 244 (641)
T ss_pred CCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEccC
Confidence 789999999999 558999999999999999865432 112221 334579999999999998888888899999964
Q ss_pred CCceE-----------EEEEeccCCCeEE--EccCC-CeEEEEecCCeEEEEeCCC---ceeeeec----C--CCeEEEE
Q 001455 867 QRKLE-----------LIEVIATKEPIRK--LDTYG-KTIFASTQGHRMKVIDSSR---TLKDIYR----S--KGIKSMS 923 (1074)
Q Consensus 867 tg~~~-----------~~~~~~h~~~V~s--~s~dg-~~L~sgS~DgtI~VWDl~~---~l~~l~~----~--~~V~sLa 923 (1074)
..... .....+|...+++ |.|.. ..+++++.||++++||++. ....+.+ . -.+++.+
T Consensus 245 G~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~ 324 (641)
T KOG0772|consen 245 GFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCA 324 (641)
T ss_pred CceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeee
Confidence 33221 1123456666665 44443 3799999999999999983 2333332 1 2377888
Q ss_pred Ee-CCE-EEEEECCCcEEEEEccCCceeeeccccccccCC--CCCeEEEEEcCCceEEEEEecCCCeEEEEECCCC-CeE
Q 001455 924 VV-QGK-IYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQ--SKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRK-PQI 998 (1074)
Q Consensus 924 ~s-dgk-LlaGs~DgsI~IwDl~tg~~~~i~~~~r~~~~h--~~~I~sL~~spd~i~las~S~dDgtI~IWDl~t~-~~i 998 (1074)
|+ +|+ |++|+.||+|++|+...-... +.+..-..| +..|+++.|+++|.++++-+ .|+++++||++.. +++
T Consensus 325 ~nrdg~~iAagc~DGSIQ~W~~~~~~v~---p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg-~D~tLKvWDLrq~kkpL 400 (641)
T KOG0772|consen 325 WNRDGKLIAAGCLDGSIQIWDKGSRTVR---PVMKVKDAHLPGQDITSISFSYDGNYLLSRG-FDDTLKVWDLRQFKKPL 400 (641)
T ss_pred cCCCcchhhhcccCCceeeeecCCcccc---cceEeeeccCCCCceeEEEeccccchhhhcc-CCCceeeeeccccccch
Confidence 97 888 556999999999998542221 112223445 44999999999999999887 6789999998653 344
Q ss_pred EEccCC--CCCeEEEEEecCCCEEEEEEC------CCcEEEEECCCCcEEEEEeCCCC-eEEEEEcCC--EEEEEECCCc
Q 001455 999 SIAPEK--GTTIQAMAVVEDFIYLNYNSS------ASSLQIWLRGTQQKVGRISAGSK-ITSLLTAND--IVLCGTETGL 1067 (1074)
Q Consensus 999 ~~l~gH--~~~VtsLafSPDG~~LaSGS~------DGtIrIWDl~tg~~l~tL~~hs~-VtsLa~dg~--~LaSGs~DG~ 1067 (1074)
....+- ..+-+.++|||+.++|++|.. .|++.+||..+.+.+.++...+. |..+.|+++ .|+.|+.||+
T Consensus 401 ~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~ 480 (641)
T KOG0772|consen 401 NVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSGDGT 480 (641)
T ss_pred hhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeecCCCc
Confidence 444332 235678899999999999863 47899999999999999887644 888899976 7888999999
Q ss_pred EEEE
Q 001455 1068 IKGW 1071 (1074)
Q Consensus 1068 IrIW 1071 (1074)
++|+
T Consensus 481 ~~vy 484 (641)
T KOG0772|consen 481 AHVY 484 (641)
T ss_pred eEEE
Confidence 9986
No 71
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=1.4e-19 Score=194.70 Aligned_cols=252 Identities=17% Similarity=0.213 Sum_probs=195.6
Q ss_pred cCCCCCcEEEEEEeCCEEEEEECCCcEEEEECCCCCeeEEEEeccCCCCEEEEEEcCCCC--EEEEEeCCCeEEEEEccC
Q 001455 790 SHKCSGAVTALIYYKGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGE--SLLSGSADKTIGVWQMVQ 867 (1074)
Q Consensus 790 ~~gH~~~VtsLafS~~~LaSGs~DGtVrIWDl~t~~~~~i~tl~gH~~~VtsLafSpdg~--~LaSGS~DGtIrIWDl~t 867 (1074)
.+.|.++|++++.++.++|+||.|-+|+|||+.+... +..+-.|.+.|+++.|.++-. +|++|+.||.|.+|+...
T Consensus 39 ~~aH~~sitavAVs~~~~aSGssDetI~IYDm~k~~q--lg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~ 116 (362)
T KOG0294|consen 39 FSAHAGSITALAVSGPYVASGSSDETIHIYDMRKRKQ--LGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGS 116 (362)
T ss_pred ccccccceeEEEecceeEeccCCCCcEEEEeccchhh--hcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCC
Confidence 4589999999999999999999999999999998754 677789999999999998876 799999999999999987
Q ss_pred CceEEEEEeccCCCeEE--EccCCCeEEEEecCCeEEEEeCCC--ceeeeecCCCeEEEEEe-CCEEEEEECCCcEEEEE
Q 001455 868 RKLELIEVIATKEPIRK--LDTYGKTIFASTQGHRMKVIDSSR--TLKDIYRSKGIKSMSVV-QGKIYIGCMDSSIQELA 942 (1074)
Q Consensus 868 g~~~~~~~~~h~~~V~s--~s~dg~~L~sgS~DgtI~VWDl~~--~l~~l~~~~~V~sLa~s-dgkLlaGs~DgsI~IwD 942 (1074)
.. ......+|...|+. +.|.++.-++++.|+.++.||+-+ ......-...-..+.|. .|.-++.+....|-+|.
T Consensus 117 W~-~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~~i~i~q 195 (362)
T KOG0294|consen 117 WE-LLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRNKIDIYQ 195 (362)
T ss_pred eE-EeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEeccEEEEEe
Confidence 74 33456688888886 468888999999999999999752 22222223334457886 56544434445688888
Q ss_pred ccCCceeeeccccccccCCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEccCCCCCeEEEEE--ecCCCEE
Q 001455 943 VSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAV--VEDFIYL 1020 (1074)
Q Consensus 943 l~tg~~~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S~dDgtI~IWDl~t~~~i~~l~gH~~~VtsLaf--SPDG~~L 1020 (1074)
+.+...... ......+.++.|-..+..++++ +++.|.+||.+...+...+.+|...|.++.+ .|++.||
T Consensus 196 ~d~A~v~~~-------i~~~~r~l~~~~l~~~~L~vG~--d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~l 266 (362)
T KOG0294|consen 196 LDNASVFRE-------IENPKRILCATFLDGSELLVGG--DNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYL 266 (362)
T ss_pred cccHhHhhh-------hhccccceeeeecCCceEEEec--CCceEEEeccCCCccceeeecchhheeeeEEEecCCceEE
Confidence 876432111 0112346677776666555544 6899999999999999999999999999985 5789999
Q ss_pred EEEECCCcEEEEECCCC-----cEEEEEeCCCCeEEEE
Q 001455 1021 NYNSSASSLQIWLRGTQ-----QKVGRISAGSKITSLL 1053 (1074)
Q Consensus 1021 aSGS~DGtIrIWDl~tg-----~~l~tL~~hs~VtsLa 1053 (1074)
+|+|.||.|+|||++.. +.+..+..+.+++|+.
T Consensus 267 vTaSSDG~I~vWd~~~~~k~~~~~l~e~n~~~RltCl~ 304 (362)
T KOG0294|consen 267 VTASSDGFIKVWDIDMETKKRPTLLAELNTNVRLTCLR 304 (362)
T ss_pred EEeccCceEEEEEccccccCCcceeEEeecCCccceee
Confidence 99999999999998765 5677777777788865
No 72
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=1.2e-20 Score=197.65 Aligned_cols=234 Identities=13% Similarity=0.171 Sum_probs=191.2
Q ss_pred CCcEEEEEEe---CCEEEEEECCCcEEEEECCCCCeeEEEEeccCCCCEEEEEEcCCCCE-EEEEeCCCeEEEEEccCCc
Q 001455 794 SGAVTALIYY---KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGES-LLSGSADKTIGVWQMVQRK 869 (1074)
Q Consensus 794 ~~~VtsLafS---~~~LaSGs~DGtVrIWDl~t~~~~~i~tl~gH~~~VtsLafSpdg~~-LaSGS~DGtIrIWDl~tg~ 869 (1074)
.+.+..++|+ .+.+++++.||++++||.... ..+++.++.|...|.++.|++..+. ++++|.|++|++|+...++
T Consensus 60 ~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~-s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~ 138 (311)
T KOG0277|consen 60 EDGLFDVAWSENHENQVIAASGDGSLRLFDLTMP-SKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPN 138 (311)
T ss_pred ccceeEeeecCCCcceEEEEecCceEEEeccCCC-CcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCc
Confidence 6889999999 568999999999999996543 3578999999999999999986554 8888999999999998776
Q ss_pred eEEEEEeccCCCeEE--EccC-CCeEEEEecCCeEEEEeCC--CceeeeecC-CCeEEEEEe--CCE-EEEEECCCcEEE
Q 001455 870 LELIEVIATKEPIRK--LDTY-GKTIFASTQGHRMKVIDSS--RTLKDIYRS-KGIKSMSVV--QGK-IYIGCMDSSIQE 940 (1074)
Q Consensus 870 ~~~~~~~~h~~~V~s--~s~d-g~~L~sgS~DgtI~VWDl~--~~l~~l~~~-~~V~sLa~s--dgk-LlaGs~DgsI~I 940 (1074)
..++ +.+|...|.. ++|+ ++.+++++.|+++++||++ +....+..+ ..+.|+.|+ +.. +++|+.|+.|+.
T Consensus 139 Sv~T-f~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~ 217 (311)
T KOG0277|consen 139 SVQT-FNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRG 217 (311)
T ss_pred ceEe-ecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEE
Confidence 5554 6678888875 5654 5689999999999999988 333444444 479999997 444 677999999999
Q ss_pred EEccCCceeeeccccccccCCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCC-CCeEEEccCCCCCeEEEEEec-CCC
Q 001455 941 LAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHR-KPQISIAPEKGTTIQAMAVVE-DFI 1018 (1074)
Q Consensus 941 wDl~tg~~~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S~dDgtI~IWDl~t-~~~i~~l~gH~~~VtsLafSP-DG~ 1018 (1074)
||++.- +.|...+.+|+-.|..+.++|...-+++..+-|-+++|||... ...+.+...|+.-|..+.||+ ++.
T Consensus 218 wDir~~-----r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~ 292 (311)
T KOG0277|consen 218 WDIRNL-----RTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPG 292 (311)
T ss_pred Eehhhc-----cccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCc
Confidence 999873 3455667899999999999998665544444788999999764 445667778999999999997 778
Q ss_pred EEEEEECCCcEEEEEC
Q 001455 1019 YLNYNSSASSLQIWLR 1034 (1074)
Q Consensus 1019 ~LaSGS~DGtIrIWDl 1034 (1074)
++|+.+.|+.++||+.
T Consensus 293 ~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 293 QVASTGWDELLYVWNP 308 (311)
T ss_pred eeeecccccceeeecc
Confidence 9999999999999984
No 73
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.85 E-value=4.6e-20 Score=197.21 Aligned_cols=275 Identities=17% Similarity=0.270 Sum_probs=214.5
Q ss_pred CCCCcEEEEEEe--CCEEEEEECCCcEEEEECCC------------C----CeeEEEEeccCCCCEEEEEEcCCCCEEEE
Q 001455 792 KCSGAVTALIYY--KGLLCSGFSDGSIKMWDIKK------------Q----SAMLVWDVKEHRKAVTSFSLFEPGESLLS 853 (1074)
Q Consensus 792 gH~~~VtsLafS--~~~LaSGs~DGtVrIWDl~t------------~----~~~~i~tl~gH~~~VtsLafSpdg~~LaS 853 (1074)
.|.+++.+-+|+ |.++|+|+.|.+|+|.|++. + .-..++++..|.+.|+++.|+|....|++
T Consensus 110 ~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS 189 (430)
T KOG0640|consen 110 SHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILIS 189 (430)
T ss_pred ecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEe
Confidence 789999999999 44899999999999999861 0 11368889999999999999999999999
Q ss_pred EeCCCeEEEEEccCCceEE-EEEeccCCCeEE--EccCCCeEEEEecCCeEEEEeCCC--ceee----eecCCCeEEEEE
Q 001455 854 GSADKTIGVWQMVQRKLEL-IEVIATKEPIRK--LDTYGKTIFASTQGHRMKVIDSSR--TLKD----IYRSKGIKSMSV 924 (1074)
Q Consensus 854 GS~DGtIrIWDl~tg~~~~-~~~~~h~~~V~s--~s~dg~~L~sgS~DgtI~VWDl~~--~l~~----l~~~~~V~sLa~ 924 (1074)
|+.|++|+++|+....... ..+.....+|.+ |.|.|.++++|+.-.++++||++. +... -.+...|+++.+
T Consensus 190 ~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Y 269 (430)
T KOG0640|consen 190 GSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRY 269 (430)
T ss_pred ccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEe
Confidence 9999999999997543211 122334456665 568899999999999999999983 2222 223556999999
Q ss_pred e-CCEEE-EEECCCcEEEEEccCCceeeeccccccccCC-CCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEc
Q 001455 925 V-QGKIY-IGCMDSSIQELAVSNNVEREIKAPFKSWRLQ-SKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIA 1001 (1074)
Q Consensus 925 s-dgkLl-aGs~DgsI~IwDl~tg~~~~i~~~~r~~~~h-~~~I~sL~~spd~i~las~S~dDgtI~IWDl~t~~~i~~l 1001 (1074)
+ .|+++ +|+.||.|++||--++++..... ..| +..|++..|..++.|+++.+ .|..+++|.+.+++.+..+
T Consensus 270 s~t~~lYvTaSkDG~IklwDGVS~rCv~t~~-----~AH~gsevcSa~Ftkn~kyiLsSG-~DS~vkLWEi~t~R~l~~Y 343 (430)
T KOG0640|consen 270 SSTGSLYVTASKDGAIKLWDGVSNRCVRTIG-----NAHGGSEVCSAVFTKNGKYILSSG-KDSTVKLWEISTGRMLKEY 343 (430)
T ss_pred cCCccEEEEeccCCcEEeeccccHHHHHHHH-----hhcCCceeeeEEEccCCeEEeecC-CcceeeeeeecCCceEEEE
Confidence 7 77754 59999999999988877654321 233 67899999999999999877 7899999999999999888
Q ss_pred cCCCC-----CeEEEEEecCCCEEEEEE-CCCcEEEEECCCCcEEEEEe-CC-CCeEEEEE--cCCEEEEEECCCcEEEE
Q 001455 1002 PEKGT-----TIQAMAVVEDFIYLNYNS-SASSLQIWLRGTQQKVGRIS-AG-SKITSLLT--ANDIVLCGTETGLIKGW 1071 (1074)
Q Consensus 1002 ~gH~~-----~VtsLafSPDG~~LaSGS-~DGtIrIWDl~tg~~l~tL~-~h-s~VtsLa~--dg~~LaSGs~DG~IrIW 1071 (1074)
.|-+. --+...|.....|++.-. ..+.+.-||.+++..+.-+. +| +.+..+.- .+..+++++.|-.+|.|
T Consensus 344 tGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFW 423 (430)
T KOG0640|consen 344 TGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFW 423 (430)
T ss_pred ecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccceeeee
Confidence 76522 123345777777777654 35779999999988877665 44 55888764 46689999999999999
Q ss_pred e
Q 001455 1072 I 1072 (1074)
Q Consensus 1072 d 1072 (1074)
-
T Consensus 424 y 424 (430)
T KOG0640|consen 424 Y 424 (430)
T ss_pred e
Confidence 5
No 74
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=5.6e-20 Score=207.01 Aligned_cols=265 Identities=14% Similarity=0.208 Sum_probs=210.1
Q ss_pred CCcEEEEEEeC---CEEEEEECCCcEEEEECCCCCeeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEccCCce
Q 001455 794 SGAVTALIYYK---GLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKL 870 (1074)
Q Consensus 794 ~~~VtsLafS~---~~LaSGs~DGtVrIWDl~t~~~~~i~tl~gH~~~VtsLafSpdg~~LaSGS~DGtIrIWDl~tg~~ 870 (1074)
.+.|++++|++ .-+|+.++ -.|.||+..+... ..++....+.|.+++|..||+.++.|+..|.|+|+|..+ +.
T Consensus 26 ~~~vssl~fsp~~P~d~aVt~S-~rvqly~~~~~~~--~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~-r~ 101 (487)
T KOG0310|consen 26 HNSVSSLCFSPKHPYDFAVTSS-VRVQLYSSVTRSV--RKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKS-RV 101 (487)
T ss_pred cCcceeEecCCCCCCceEEecc-cEEEEEecchhhh--hhhHHhhccceeEEEeecCCeEEEccCCcCcEEEecccc-HH
Confidence 57899999993 23444433 3588999887643 455666788999999999999999999999999999655 33
Q ss_pred EEEEEeccCCCeEE--EccCC-CeEEEEecCCeEEEEeCCCceee--ee-cCCCeEEEEEe--CCE-EEEEECCCcEEEE
Q 001455 871 ELIEVIATKEPIRK--LDTYG-KTIFASTQGHRMKVIDSSRTLKD--IY-RSKGIKSMSVV--QGK-IYIGCMDSSIQEL 941 (1074)
Q Consensus 871 ~~~~~~~h~~~V~s--~s~dg-~~L~sgS~DgtI~VWDl~~~l~~--l~-~~~~V~sLa~s--dgk-LlaGs~DgsI~Iw 941 (1074)
.......|..++.. |++.+ ..+++|+.|+.+++||+++.... +. +...|+|.++. +++ +++|+.||.|++|
T Consensus 102 iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~ 181 (487)
T KOG0310|consen 102 ILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLW 181 (487)
T ss_pred HHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEE
Confidence 34455678888764 66554 47788889999999999854432 22 35679999996 454 6779999999999
Q ss_pred EccCCceeeeccccccccCCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCC-CCeEEEccCCCCCeEEEEEecCCCEE
Q 001455 942 AVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHR-KPQISIAPEKGTTIQAMAVVEDFIYL 1020 (1074)
Q Consensus 942 Dl~tg~~~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S~dDgtI~IWDl~t-~~~i~~l~gH~~~VtsLafSPDG~~L 1020 (1074)
|.+....... . -.|+.||.++.+-|.|..+++++ +..|++||+.+ ++.+..+..|...|+|+++..++..|
T Consensus 182 DtR~~~~~v~-----e-lnhg~pVe~vl~lpsgs~iasAg--Gn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rL 253 (487)
T KOG0310|consen 182 DTRSLTSRVV-----E-LNHGCPVESVLALPSGSLIASAG--GNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRL 253 (487)
T ss_pred EeccCCceeE-----E-ecCCCceeeEEEcCCCCEEEEcC--CCeEEEEEecCCceehhhhhcccceEEEEEeecCCceE
Confidence 9998532111 1 35799999999999988888775 77999999875 45555555599999999999999999
Q ss_pred EEEECCCcEEEEECCCCcEEEEEeCCCCeEEEE--EcCCEEEEEECCCcEEE
Q 001455 1021 NYNSSASSLQIWLRGTQQKVGRISAGSKITSLL--TANDIVLCGTETGLIKG 1070 (1074)
Q Consensus 1021 aSGS~DGtIrIWDl~tg~~l~tL~~hs~VtsLa--~dg~~LaSGs~DG~IrI 1070 (1074)
+|||-|+.|++||+.+.+.++.+...++|.+++ ++++.++.|..||.+-+
T Consensus 254 lS~sLD~~VKVfd~t~~Kvv~s~~~~~pvLsiavs~dd~t~viGmsnGlv~~ 305 (487)
T KOG0310|consen 254 LSGSLDRHVKVFDTTNYKVVHSWKYPGPVLSIAVSPDDQTVVIGMSNGLVSI 305 (487)
T ss_pred eecccccceEEEEccceEEEEeeecccceeeEEecCCCceEEEecccceeee
Confidence 999999999999999999999999999998866 45689999999998754
No 75
>PTZ00420 coronin; Provisional
Probab=99.85 E-value=5.2e-19 Score=212.69 Aligned_cols=225 Identities=17% Similarity=0.147 Sum_probs=165.8
Q ss_pred EEECCCcEEEEECCCCCeeEEEEeccCCCCEEEEEEcCC-CCEEEEEeCCCeEEEEEccCCceEEEEEeccCCCeEEEcc
Q 001455 809 SGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEP-GESLLSGSADKTIGVWQMVQRKLELIEVIATKEPIRKLDT 887 (1074)
Q Consensus 809 SGs~DGtVrIWDl~t~~~~~i~tl~gH~~~VtsLafSpd-g~~LaSGS~DGtIrIWDl~tg~~~~~~~~~h~~~V~s~s~ 887 (1074)
+|+.+|.|++|+.... ..+..+.+|.++|.+++|+|+ +..|+||+.||+|++||+.++...... ...++..+.
T Consensus 49 gGG~~gvI~L~~~~r~--~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~---i~~p~~~L~- 122 (568)
T PTZ00420 49 GGGLIGAIRLENQMRK--PPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKE---IKDPQCILK- 122 (568)
T ss_pred CCCceeEEEeeecCCC--ceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccc---cccceEEee-
Confidence 3778899999998765 357889999999999999997 788999999999999999864311000 000000000
Q ss_pred CCCeEEEEecCCeEEEEeCCCceeeeecCCCeEEEEEe-CCE--EEEEECCCcEEEEEccCCceeeeccccccccCCCCC
Q 001455 888 YGKTIFASTQGHRMKVIDSSRTLKDIYRSKGIKSMSVV-QGK--IYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKP 964 (1074)
Q Consensus 888 dg~~L~sgS~DgtI~VWDl~~~l~~l~~~~~V~sLa~s-dgk--LlaGs~DgsI~IwDl~tg~~~~i~~~~r~~~~h~~~ 964 (1074)
.+...|.+++|+ ++. +++|+.|+.|++||+.+++.... +. +...
T Consensus 123 --------------------------gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~------i~-~~~~ 169 (568)
T PTZ00420 123 --------------------------GHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQ------IN-MPKK 169 (568)
T ss_pred --------------------------cCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEE------Ee-cCCc
Confidence 123457788885 443 34688899999999988654321 11 3567
Q ss_pred eEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEccCCCCCeEE-----EEEecCCCEEEEEECCC----cEEEEECC
Q 001455 965 INSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQA-----MAVVEDFIYLNYNSSAS----SLQIWLRG 1035 (1074)
Q Consensus 965 I~sL~~spd~i~las~S~dDgtI~IWDl~t~~~i~~l~gH~~~Vts-----LafSPDG~~LaSGS~DG----tIrIWDl~ 1035 (1074)
|.++.|++++.++++++ .|+.|++||++++..+..+.+|.+.+.+ ..|++++.+|+|++.|+ +|+|||++
T Consensus 170 V~SlswspdG~lLat~s-~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr 248 (568)
T PTZ00420 170 LSSLKWNIKGNLLSGTC-VGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLK 248 (568)
T ss_pred EEEEEECCCCCEEEEEe-cCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECC
Confidence 99999999999888766 7899999999999999889999876543 23468999999988774 79999988
Q ss_pred C-CcEEEEEeCCCCeEEE--EEc---CCEEEEEECCCcEEEEec
Q 001455 1036 T-QQKVGRISAGSKITSL--LTA---NDIVLCGTETGLIKGWIP 1073 (1074)
Q Consensus 1036 t-g~~l~tL~~hs~VtsL--a~d---g~~LaSGs~DG~IrIWdi 1073 (1074)
+ ++++..+..+.....+ .|+ |.++++|+.|+.|++|++
T Consensus 249 ~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~ 292 (568)
T PTZ00420 249 NTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQH 292 (568)
T ss_pred CCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEc
Confidence 5 6677766655332222 222 678999999999999985
No 76
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.85 E-value=7.9e-20 Score=211.08 Aligned_cols=279 Identities=17% Similarity=0.193 Sum_probs=215.4
Q ss_pred CCCCcEEEEEEe-------------CCEEEEEECCCcEEEEECCCCCeeEE-----------E-----------------
Q 001455 792 KCSGAVTALIYY-------------KGLLCSGFSDGSIKMWDIKKQSAMLV-----------W----------------- 830 (1074)
Q Consensus 792 gH~~~VtsLafS-------------~~~LaSGs~DGtVrIWDl~t~~~~~i-----------~----------------- 830 (1074)
-|..-||.|.-- .+.+.|++.||+||+||+.......+ .
T Consensus 367 yHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~ 446 (1080)
T KOG1408|consen 367 YHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAG 446 (1080)
T ss_pred eccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCC
Confidence 356666666432 35699999999999999976221000 0
Q ss_pred -------EeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEccCCceEEEEEeccCCCeEEEcc-----CCCeEEEEecC
Q 001455 831 -------DVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATKEPIRKLDT-----YGKTIFASTQG 898 (1074)
Q Consensus 831 -------tl~gH~~~VtsLafSpdg~~LaSGS~DGtIrIWDl~tg~~~~~~~~~h~~~V~s~s~-----dg~~L~sgS~D 898 (1074)
..-+...+|.+++.+|+|++|++|..-|+++||++..-+.. .....|...|.++.. ..+.+++++.|
T Consensus 447 ~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~-~~~eAHesEilcLeyS~p~~~~kLLASasrd 525 (1080)
T KOG1408|consen 447 IFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYT-CFMEAHESEILCLEYSFPVLTNKLLASASRD 525 (1080)
T ss_pred cccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhh-hheecccceeEEEeecCchhhhHhhhhccCC
Confidence 00122357999999999999999999999999999876543 356789999998753 24589999999
Q ss_pred CeEEEEeCCCce---eeeec-CCCeEEEEEe-CC---EEEEEECCCcEEEEEccCCceeeeccccccccCCCCCeEEEEE
Q 001455 899 HRMKVIDSSRTL---KDIYR-SKGIKSMSVV-QG---KIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVV 970 (1074)
Q Consensus 899 gtI~VWDl~~~l---~~l~~-~~~V~sLa~s-dg---kLlaGs~DgsI~IwDl~tg~~~~i~~~~r~~~~h~~~I~sL~~ 970 (1074)
..|+|||..+.. .++.. ...|+++.|. +| ++++++.|..|.+-..+......++.. ..-......++.+.+
T Consensus 526 RlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r-~t~t~~ktTlYDm~V 604 (1080)
T KOG1408|consen 526 RLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPR-HTQTLSKTTLYDMAV 604 (1080)
T ss_pred ceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccc-cccccccceEEEeee
Confidence 999999998543 34444 4569999996 33 588999999886544442222222111 111123567899999
Q ss_pred cCCceEEEEEecCCCeEEEEECCCCCeEEEccC---CCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCcEEEEEeCCC
Q 001455 971 YKDWLYSASSSVEGSNIKEWRRHRKPQISIAPE---KGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAGS 1047 (1074)
Q Consensus 971 spd~i~las~S~dDgtI~IWDl~t~~~i~~l~g---H~~~VtsLafSPDG~~LaSGS~DGtIrIWDl~tg~~l~tL~~hs 1047 (1074)
.|...++++.. .|..|+|||+.+++..+.|++ |.+....+...|.|.||++.+.|.++.++|..+|+++.+..||+
T Consensus 605 dp~~k~v~t~c-QDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHs 683 (1080)
T KOG1408|consen 605 DPTSKLVVTVC-QDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHS 683 (1080)
T ss_pred CCCcceEEEEe-cccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcc
Confidence 99999999877 889999999999999998875 55678889999999999999999999999999999999999997
Q ss_pred C-eEEEEEcCC--EEEEEECCCcEEEEec
Q 001455 1048 K-ITSLLTAND--IVLCGTETGLIKGWIP 1073 (1074)
Q Consensus 1048 ~-VtsLa~dg~--~LaSGs~DG~IrIWdi 1073 (1074)
. |+.+-|.++ .|++.+.||.|.||..
T Consensus 684 E~VTG~kF~nDCkHlISvsgDgCIFvW~l 712 (1080)
T KOG1408|consen 684 EAVTGVKFLNDCKHLISVSGDGCIFVWKL 712 (1080)
T ss_pred hheeeeeecccchhheeecCCceEEEEEC
Confidence 7 999888654 9999999999999974
No 77
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.85 E-value=1.8e-19 Score=200.04 Aligned_cols=269 Identities=15% Similarity=0.242 Sum_probs=221.4
Q ss_pred CCcEEEEEEeC--CEEEEEECCCcEEEEECCCCCeeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEccCCceE
Q 001455 794 SGAVTALIYYK--GLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLE 871 (1074)
Q Consensus 794 ~~~VtsLafS~--~~LaSGs~DGtVrIWDl~t~~~~~i~tl~gH~~~VtsLafSpdg~~LaSGS~DGtIrIWDl~tg~~~ 871 (1074)
...|+++...+ +.+++||.|.++.++|...++. +.+++||...|+.+.|+|+...+++++.|..|+||...... .
T Consensus 219 ~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~--l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s-~ 295 (506)
T KOG0289|consen 219 TPGITALDIIPSSSKILTGGEDKTAVLFDKPSNQI--LATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSS-E 295 (506)
T ss_pred CCCeeEEeecCCCCcceecCCCCceEEEecchhhh--hhhccCcceEEEEEEeccchhheeecCCcceEEeecccccc-C
Confidence 45778888773 7899999999999999998754 78899999999999999999999999999999999987655 3
Q ss_pred EEEEeccCCCeEEE--ccCCCeEEEEecCCeEEEEeCCC--ceeeeecC---CCeEEEEEe-CCEEEE-EECCCcEEEEE
Q 001455 872 LIEVIATKEPIRKL--DTYGKTIFASTQGHRMKVIDSSR--TLKDIYRS---KGIKSMSVV-QGKIYI-GCMDSSIQELA 942 (1074)
Q Consensus 872 ~~~~~~h~~~V~s~--s~dg~~L~sgS~DgtI~VWDl~~--~l~~l~~~---~~V~sLa~s-dgkLla-Gs~DgsI~IwD 942 (1074)
......|..+|+.+ .+.|.|+++++.|++..+.|++. .+...... -.+++.+|. ||.++. |..||.+++||
T Consensus 296 ~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwd 375 (506)
T KOG0289|consen 296 PTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWD 375 (506)
T ss_pred ccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEE
Confidence 44667899999864 68899999999999999999983 22222222 237888885 998665 89999999999
Q ss_pred ccCCceeeeccccccccCCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEccC-CCCCeEEEEEecCCCEEE
Q 001455 943 VSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPE-KGTTIQAMAVVEDFIYLN 1021 (1074)
Q Consensus 943 l~tg~~~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S~dDgtI~IWDl~t~~~i~~l~g-H~~~VtsLafSPDG~~La 1021 (1074)
+..+.. ...|.+|..+|..+.|+.+|.|+++.. +|+.|++||++..+..+++.- ....|.++.|.+.|.|++
T Consensus 376 lks~~~------~a~Fpght~~vk~i~FsENGY~Lat~a-dd~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~ 448 (506)
T KOG0289|consen 376 LKSQTN------VAKFPGHTGPVKAISFSENGYWLATAA-DDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLG 448 (506)
T ss_pred cCCccc------cccCCCCCCceeEEEeccCceEEEEEe-cCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEE
Confidence 998553 245678999999999999999999887 888899999987766655543 233799999999999999
Q ss_pred EEECCCcEEEEEC--CCCcEEEEEeCCC-CeEEEEEc--CCEEEEEECCCcEEEEe
Q 001455 1022 YNSSASSLQIWLR--GTQQKVGRISAGS-KITSLLTA--NDIVLCGTETGLIKGWI 1072 (1074)
Q Consensus 1022 SGS~DGtIrIWDl--~tg~~l~tL~~hs-~VtsLa~d--g~~LaSGs~DG~IrIWd 1072 (1074)
.++.|=+|++++. ..++.+..+..|. ..+++.|. .++++++|.|..++++.
T Consensus 449 ~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a 504 (506)
T KOG0289|consen 449 IAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYA 504 (506)
T ss_pred eecceeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEee
Confidence 9988877777763 3566788888885 58888886 56999999999998875
No 78
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=4.3e-20 Score=219.50 Aligned_cols=237 Identities=14% Similarity=0.190 Sum_probs=186.0
Q ss_pred EEEec-cCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEccCCce-------------------------------------
Q 001455 829 VWDVK-EHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKL------------------------------------- 870 (1074)
Q Consensus 829 i~tl~-gH~~~VtsLafSpdg~~LaSGS~DGtIrIWDl~tg~~------------------------------------- 870 (1074)
.+.+. .|.++|+++.|++||++|||||.||.|+||.+.....
T Consensus 259 ~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~ 338 (712)
T KOG0283|consen 259 VQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSS 338 (712)
T ss_pred eeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccc
Confidence 34556 8999999999999999999999999999998765000
Q ss_pred ----------------------EEEEEeccCCCeEEEccC-CCeEEEEecCCeEEEEeCC--CceeeeecCCCeEEEEEe
Q 001455 871 ----------------------ELIEVIATKEPIRKLDTY-GKTIFASTQGHRMKVIDSS--RTLKDIYRSKGIKSMSVV 925 (1074)
Q Consensus 871 ----------------------~~~~~~~h~~~V~s~s~d-g~~L~sgS~DgtI~VWDl~--~~l~~l~~~~~V~sLa~s 925 (1074)
....+.+|...|..+++. +++|++++.|.+|++|++. .++..+.+...|+|++|.
T Consensus 339 ~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcVaFn 418 (712)
T KOG0283|consen 339 SRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCVAFN 418 (712)
T ss_pred cccccCCccccCCCccccccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCcceeeEEecCCeeEEEEec
Confidence 000122344455555543 5589999999999999998 688999999999999994
Q ss_pred ---CCEEEEEECCCcEEEEEccCCceeeeccccccccCCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEcc
Q 001455 926 ---QGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAP 1002 (1074)
Q Consensus 926 ---dgkLlaGs~DgsI~IwDl~tg~~~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S~dDgtI~IWDl~t~~~i~~l~ 1002 (1074)
|..+++|+-||.|++|++...+.. .|..-...|+++++.|+|.+.+.++ -+|.+++|+....+......
T Consensus 419 PvDDryFiSGSLD~KvRiWsI~d~~Vv-------~W~Dl~~lITAvcy~PdGk~avIGt-~~G~C~fY~t~~lk~~~~~~ 490 (712)
T KOG0283|consen 419 PVDDRYFISGSLDGKVRLWSISDKKVV-------DWNDLRDLITAVCYSPDGKGAVIGT-FNGYCRFYDTEGLKLVSDFH 490 (712)
T ss_pred ccCCCcEeecccccceEEeecCcCeeE-------eehhhhhhheeEEeccCCceEEEEE-eccEEEEEEccCCeEEEeee
Confidence 555889999999999999885432 3444468899999999999998887 56899999987766543322
Q ss_pred C--C------CCCeEEEEEecCC-CEEEEEECCCcEEEEECCCCcEEEEEeCC----CCeEE-EEEcCCEEEEEECCCcE
Q 001455 1003 E--K------GTTIQAMAVVEDF-IYLNYNSSASSLQIWLRGTQQKVGRISAG----SKITS-LLTANDIVLCGTETGLI 1068 (1074)
Q Consensus 1003 g--H------~~~VtsLafSPDG-~~LaSGS~DGtIrIWDl~tg~~l~tL~~h----s~Vts-La~dg~~LaSGs~DG~I 1068 (1074)
. | ...|+.+.|.|.. ..++..+.|..|+|+|.++...+..|+|. +++.+ +..+|++|++|++|..|
T Consensus 491 I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~V 570 (712)
T KOG0283|consen 491 IRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWV 570 (712)
T ss_pred EeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceE
Confidence 1 1 2279999998733 34666678999999999999999999976 23554 66689999999999999
Q ss_pred EEEec
Q 001455 1069 KGWIP 1073 (1074)
Q Consensus 1069 rIWdi 1073 (1074)
+||+.
T Consensus 571 YiW~~ 575 (712)
T KOG0283|consen 571 YIWKN 575 (712)
T ss_pred EEEeC
Confidence 99984
No 79
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=1.1e-19 Score=211.57 Aligned_cols=235 Identities=15% Similarity=0.197 Sum_probs=195.2
Q ss_pred CCCCcEEEEEEe--CCEEEEEECCCcEEEEECCCCCeeEEEEecc-CCCCEEEEEEcCCCCEEEEEeCCCeEEEEEccCC
Q 001455 792 KCSGAVTALIYY--KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKE-HRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQR 868 (1074)
Q Consensus 792 gH~~~VtsLafS--~~~LaSGs~DGtVrIWDl~t~~~~~i~tl~g-H~~~VtsLafSpdg~~LaSGS~DGtIrIWDl~tg 868 (1074)
-+.+.|+++.|+ +++|++|..+|.|.|||....+. +.++.+ |...|-+++|+ +..+.+|+.||.|..+|++..
T Consensus 215 ~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~--~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~ 290 (484)
T KOG0305|consen 215 FGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKK--TRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRIS 290 (484)
T ss_pred cCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccc--cccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecc
Confidence 448999999999 77999999999999999987654 677788 99999999997 667999999999999999987
Q ss_pred ceEEEEEeccCCCeEE--EccCCCeEEEEecCCeEEEEeCC--Cceeee-ecCCCeEEEEEe---CCEEEE--EECCCcE
Q 001455 869 KLELIEVIATKEPIRK--LDTYGKTIFASTQGHRMKVIDSS--RTLKDI-YRSKGIKSMSVV---QGKIYI--GCMDSSI 938 (1074)
Q Consensus 869 ~~~~~~~~~h~~~V~s--~s~dg~~L~sgS~DgtI~VWDl~--~~l~~l-~~~~~V~sLa~s---dgkLla--Gs~DgsI 938 (1074)
+.......+|...|.. +++++.++++|+.|+.+.|||.. .....+ .+...|..++|. .|-+++ |+.|+.|
T Consensus 291 ~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i 370 (484)
T KOG0305|consen 291 QHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCI 370 (484)
T ss_pred hhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEE
Confidence 6544445678888875 67999999999999999999985 233333 345679999995 455666 5679999
Q ss_pred EEEEccCCceeeeccccccccCCCCCeEEEEEcCCceE-EEEEecCCCeEEEEECCCCCeEEEccCCCCCeEEEEEecCC
Q 001455 939 QELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLY-SASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDF 1017 (1074)
Q Consensus 939 ~IwDl~tg~~~~i~~~~r~~~~h~~~I~sL~~spd~i~-las~S~dDgtI~IWDl~t~~~i~~l~gH~~~VtsLafSPDG 1017 (1074)
++||..+|..... ...+..|+++.|++...- +.+.+..++.|.+|+..+...+..+.+|...|..++++|||
T Consensus 371 ~fwn~~~g~~i~~-------vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg 443 (484)
T KOG0305|consen 371 KFWNTNTGARIDS-------VDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDG 443 (484)
T ss_pred EEEEcCCCcEecc-------cccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCC
Confidence 9999998776433 123788999999998743 44444456789999999999999999999999999999999
Q ss_pred CEEEEEECCCcEEEEECCCC
Q 001455 1018 IYLNYNSSASSLQIWLRGTQ 1037 (1074)
Q Consensus 1018 ~~LaSGS~DGtIrIWDl~tg 1037 (1074)
.++++|+.|.++++|++-+.
T Consensus 444 ~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 444 ETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred CEEEEecccCcEEeccccCC
Confidence 99999999999999997664
No 80
>PTZ00421 coronin; Provisional
Probab=99.84 E-value=1.5e-18 Score=207.16 Aligned_cols=247 Identities=12% Similarity=0.065 Sum_probs=175.2
Q ss_pred CCEEEEEECCCcEEEEECCCCCee-----------EEEEeccCCCCEEEEEEcC-CCCEEEEEeCCCeEEEEEccCCce-
Q 001455 804 KGLLCSGFSDGSIKMWDIKKQSAM-----------LVWDVKEHRKAVTSFSLFE-PGESLLSGSADKTIGVWQMVQRKL- 870 (1074)
Q Consensus 804 ~~~LaSGs~DGtVrIWDl~t~~~~-----------~i~tl~gH~~~VtsLafSp-dg~~LaSGS~DGtIrIWDl~tg~~- 870 (1074)
+..+++++.+..+..|+...+... ....+.+|.+.|++++|+| ++..|++|+.||+|++||+.++..
T Consensus 32 ~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~ 111 (493)
T PTZ00421 32 CSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLT 111 (493)
T ss_pred CCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccc
Confidence 345677777776667765443211 0123679999999999999 788999999999999999976532
Q ss_pred -----EEEEEeccCCCeEE--EccCC-CeEEEEecCCeEEEEeCCCc--eeeee-cCCCeEEEEEe-CCE-EEEEECCCc
Q 001455 871 -----ELIEVIATKEPIRK--LDTYG-KTIFASTQGHRMKVIDSSRT--LKDIY-RSKGIKSMSVV-QGK-IYIGCMDSS 937 (1074)
Q Consensus 871 -----~~~~~~~h~~~V~s--~s~dg-~~L~sgS~DgtI~VWDl~~~--l~~l~-~~~~V~sLa~s-dgk-LlaGs~Dgs 937 (1074)
......+|...|.+ |+|.+ +.+++++.|++|++||+... ...+. +...|.+++|+ +|. +++|+.|+.
T Consensus 112 ~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~ 191 (493)
T PTZ00421 112 QNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKK 191 (493)
T ss_pred cccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCE
Confidence 12345678888876 45554 58999999999999999842 33333 34569999997 666 667999999
Q ss_pred EEEEEccCCceeeeccccccccCCCCC-eEEEEEcCCceEEEEEe---cCCCeEEEEECCCCC-eEEEccCC-CCCeEEE
Q 001455 938 IQELAVSNNVEREIKAPFKSWRLQSKP-INSLVVYKDWLYSASSS---VEGSNIKEWRRHRKP-QISIAPEK-GTTIQAM 1011 (1074)
Q Consensus 938 I~IwDl~tg~~~~i~~~~r~~~~h~~~-I~sL~~spd~i~las~S---~dDgtI~IWDl~t~~-~i~~l~gH-~~~VtsL 1011 (1074)
|++||+++++... .+..|... ...+.+.+++..+++.+ ..|+.|++||++... .......+ ...+...
T Consensus 192 IrIwD~rsg~~v~------tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~ 265 (493)
T PTZ00421 192 LNIIDPRDGTIVS------SVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIP 265 (493)
T ss_pred EEEEECCCCcEEE------EEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEE
Confidence 9999999876532 22445433 34566777655555443 247899999987643 34433333 3456667
Q ss_pred EEecCCCEEEEEE-CCCcEEEEECCCCcEEEEEeCC--CCeEEEEEcC
Q 001455 1012 AVVEDFIYLNYNS-SASSLQIWLRGTQQKVGRISAG--SKITSLLTAN 1056 (1074)
Q Consensus 1012 afSPDG~~LaSGS-~DGtIrIWDl~tg~~l~tL~~h--s~VtsLa~dg 1056 (1074)
.|++++.++++|+ .||.|++||+.+++.+...... .++.+++|.+
T Consensus 266 ~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~p 313 (493)
T PTZ00421 266 FFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMP 313 (493)
T ss_pred EEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEecc
Confidence 8899999999887 5999999999999987766543 2355555543
No 81
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.84 E-value=2.4e-20 Score=214.92 Aligned_cols=262 Identities=16% Similarity=0.202 Sum_probs=211.8
Q ss_pred CCEEEEEECCCcEEEEECCCCCee----EEEEeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEccCCceEE-EEEecc
Q 001455 804 KGLLCSGFSDGSIKMWDIKKQSAM----LVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLEL-IEVIAT 878 (1074)
Q Consensus 804 ~~~LaSGs~DGtVrIWDl~t~~~~----~i~tl~gH~~~VtsLafSpdg~~LaSGS~DGtIrIWDl~tg~~~~-~~~~~h 878 (1074)
+.+|+|||.||.|++|++...... .+..++.|.+.|+.+....+|+.|+|+|.|-+|++|+...+...+ .....|
T Consensus 37 ~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H 116 (735)
T KOG0308|consen 37 GRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTH 116 (735)
T ss_pred CceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhcc
Confidence 457999999999999998754321 366788999999999999999999999999999999998764222 234578
Q ss_pred CCCeEEEc---cCCCeEEEEecCCeEEEEeCCCcee----e--------e--ecCCCeEEEEEe-CCE-EEEEECCCcEE
Q 001455 879 KEPIRKLD---TYGKTIFASTQGHRMKVIDSSRTLK----D--------I--YRSKGIKSMSVV-QGK-IYIGCMDSSIQ 939 (1074)
Q Consensus 879 ~~~V~s~s---~dg~~L~sgS~DgtI~VWDl~~~l~----~--------l--~~~~~V~sLa~s-dgk-LlaGs~DgsI~ 939 (1074)
++.|.++. .+...+++|+-|+.|.+||++.... . + .+..+|.+++.. .|. +++|+..+.++
T Consensus 117 ~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr 196 (735)
T KOG0308|consen 117 KDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLR 196 (735)
T ss_pred cchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceE
Confidence 99999875 4677999999999999999982211 1 1 112357788776 455 66799999999
Q ss_pred EEEccCCceeeeccccccccCCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEccCCCCCeEEEEEecCCCE
Q 001455 940 ELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIY 1019 (1074)
Q Consensus 940 IwDl~tg~~~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S~dDgtI~IWDl~t~~~i~~l~gH~~~VtsLafSPDG~~ 1019 (1074)
+||.++++... .+.+|...|..+..+++|..+++++ .||+|++||+...+++.++..|...|+++..+|+-.+
T Consensus 197 ~wDprt~~kim------kLrGHTdNVr~ll~~dDGt~~ls~s-SDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~ 269 (735)
T KOG0308|consen 197 LWDPRTCKKIM------KLRGHTDNVRVLLVNDDGTRLLSAS-SDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTH 269 (735)
T ss_pred Eecccccccee------eeeccccceEEEEEcCCCCeEeecC-CCceEEeeeccccceeeeEEeccCceEEEeeCCCcce
Confidence 99999966532 2368999999999999999999888 7899999999999999999999999999999999999
Q ss_pred EEEEECCCcEEEEECCCCc-EEEEEeCCCCeEEEEEc--CCEEEEEECCCcEEEEe
Q 001455 1020 LNYNSSASSLQIWLRGTQQ-KVGRISAGSKITSLLTA--NDIVLCGTETGLIKGWI 1072 (1074)
Q Consensus 1020 LaSGS~DGtIrIWDl~tg~-~l~tL~~hs~VtsLa~d--g~~LaSGs~DG~IrIWd 1072 (1074)
+.+|+.||.|..=|+.+.. ...-++..++|..+..+ .+-+.+++.|+.|+-|.
T Consensus 270 vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~ 325 (735)
T KOG0308|consen 270 VYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWK 325 (735)
T ss_pred EEecCCCCcEEecccCCchhheEeecCCCchhhhhhccccCCceeeeccccceecC
Confidence 9999999999999988843 34444444567666554 44557888899999885
No 82
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.84 E-value=1.7e-20 Score=210.69 Aligned_cols=238 Identities=16% Similarity=0.262 Sum_probs=196.0
Q ss_pred EEEEeccCCCCEEEEEEcC-CCCEEEEEeCCCeEEEEEccCCceEEEEEeccCCCeEE--EccCCCeEEEEecCCeEEEE
Q 001455 828 LVWDVKEHRKAVTSFSLFE-PGESLLSGSADKTIGVWQMVQRKLELIEVIATKEPIRK--LDTYGKTIFASTQGHRMKVI 904 (1074)
Q Consensus 828 ~i~tl~gH~~~VtsLafSp-dg~~LaSGS~DGtIrIWDl~tg~~~~~~~~~h~~~V~s--~s~dg~~L~sgS~DgtI~VW 904 (1074)
.++++.||+..|+++.|.| .+..|++||.|+.|+||++.........+.+|..+|.. |+..|..+++++.|+.+++|
T Consensus 206 ~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlw 285 (503)
T KOG0282|consen 206 LSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLW 285 (503)
T ss_pred heeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeee
Confidence 5788999999999999999 78889999999999999998744344567789999985 67889999999999999999
Q ss_pred eCC--CceeeeecCCCeEEEEEe-CC--EEEEEECCCcEEEEEccCCceeeeccccccccCCCCCeEEEEEcCCceEEEE
Q 001455 905 DSS--RTLKDIYRSKGIKSMSVV-QG--KIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSAS 979 (1074)
Q Consensus 905 Dl~--~~l~~l~~~~~V~sLa~s-dg--kLlaGs~DgsI~IwDl~tg~~~~i~~~~r~~~~h~~~I~sL~~spd~i~las 979 (1074)
|++ .+...+.....+.|+.|. ++ .+++|+.|+.|+.||+++++.. +.+..|-.+|..+.|-+++...++
T Consensus 286 DtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvv------qeYd~hLg~i~~i~F~~~g~rFis 359 (503)
T KOG0282|consen 286 DTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVV------QEYDRHLGAILDITFVDEGRRFIS 359 (503)
T ss_pred ccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHH------HHHHhhhhheeeeEEccCCceEee
Confidence 998 345555567778999994 44 4888999999999999998753 445678899999999999999998
Q ss_pred EecCCCeEEEEECCCCCeEEEcc-CCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCC---cEEEEEeCCC----CeEE
Q 001455 980 SSVEGSNIKEWRRHRKPQISIAP-EKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQ---QKVGRISAGS----KITS 1051 (1074)
Q Consensus 980 ~S~dDgtI~IWDl~t~~~i~~l~-gH~~~VtsLafSPDG~~LaSGS~DGtIrIWDl~tg---~~l~tL~~hs----~Vts 1051 (1074)
.+ +|++++||+......++... .+.....++..+|++.++++-+.|+.|.++..... ..-..+++|. .+.+
T Consensus 360 sS-Ddks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v 438 (503)
T KOG0282|consen 360 SS-DDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQV 438 (503)
T ss_pred ec-cCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeE
Confidence 77 89999999988776655433 23346778999999999999999999999985443 2345666772 2333
Q ss_pred -EEEcCCEEEEEECCCcEEEEe
Q 001455 1052 -LLTANDIVLCGTETGLIKGWI 1072 (1074)
Q Consensus 1052 -La~dg~~LaSGs~DG~IrIWd 1072 (1074)
+++||++|++|+.||.+.+||
T Consensus 439 ~fSpDG~~l~SGdsdG~v~~wd 460 (503)
T KOG0282|consen 439 DFSPDGRTLCSGDSDGKVNFWD 460 (503)
T ss_pred EEcCCCCeEEeecCCccEEEee
Confidence 667789999999999999998
No 83
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.84 E-value=5.2e-19 Score=214.74 Aligned_cols=280 Identities=15% Similarity=0.129 Sum_probs=217.2
Q ss_pred CCCCcEEEEEEe-CC-EEEEEE--CCCcEEEEECCCC----------CeeEEEEeccCCCCEEEEEEcCCCCEEEEEeCC
Q 001455 792 KCSGAVTALIYY-KG-LLCSGF--SDGSIKMWDIKKQ----------SAMLVWDVKEHRKAVTSFSLFEPGESLLSGSAD 857 (1074)
Q Consensus 792 gH~~~VtsLafS-~~-~LaSGs--~DGtVrIWDl~t~----------~~~~i~tl~gH~~~VtsLafSpdg~~LaSGS~D 857 (1074)
.|+..|.+|+.+ ++ .+|||| .||.++||+.+.- -...+.+...|.+.|+|+.|+|||++||+||+|
T Consensus 11 H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD 90 (942)
T KOG0973|consen 11 HNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDD 90 (942)
T ss_pred cCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCc
Confidence 346679999999 44 699999 9999999987531 123566778999999999999999999999999
Q ss_pred CeEEEEEccC----------Cce-------EEEEEeccCCCeEE--EccCCCeEEEEecCCeEEEEeCC--CceeeeecC
Q 001455 858 KTIGVWQMVQ----------RKL-------ELIEVIATKEPIRK--LDTYGKTIFASTQGHRMKVIDSS--RTLKDIYRS 916 (1074)
Q Consensus 858 GtIrIWDl~t----------g~~-------~~~~~~~h~~~V~s--~s~dg~~L~sgS~DgtI~VWDl~--~~l~~l~~~ 916 (1074)
+.|.||.... |.. ......+|+..|.. ++|++.++++++.|++|.+||.. .....+..+
T Consensus 91 ~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H 170 (942)
T KOG0973|consen 91 RLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGH 170 (942)
T ss_pred ceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeeecc
Confidence 9999999772 000 23345578888875 67889999999999999999987 455555554
Q ss_pred -CCeEEEEEe-CCE-EEEEECCCcEEEEEccCCc-eeeeccccccccCCCCCeEEEEEcCCceEEEEEec---CCCeEEE
Q 001455 917 -KGIKSMSVV-QGK-IYIGCMDSSIQELAVSNNV-EREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSV---EGSNIKE 989 (1074)
Q Consensus 917 -~~V~sLa~s-dgk-LlaGs~DgsI~IwDl~tg~-~~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S~---dDgtI~I 989 (1074)
..|..+.|. -|+ +++-+.|++|++|++.+-. .+.+..|... .........+.|+|||.++++... ...++.|
T Consensus 171 ~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~-~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~I 249 (942)
T KOG0973|consen 171 QSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEE-SPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAI 249 (942)
T ss_pred cccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhh-CCCcceeeecccCCCcCeecchhhccCCcceeEE
Confidence 459999996 676 4558899999999965522 2333222111 123567788999999999987653 2248899
Q ss_pred EECCCCCeEEEccCCCCCeEEEEEec-----CCC------------EEEEEECCCcEEEEECCCCcEEEEEeCC--CCeE
Q 001455 990 WRRHRKPQISIAPEKGTTIQAMAVVE-----DFI------------YLNYNSSASSLQIWLRGTQQKVGRISAG--SKIT 1050 (1074)
Q Consensus 990 WDl~t~~~i~~l~gH~~~VtsLafSP-----DG~------------~LaSGS~DGtIrIWDl~tg~~l~tL~~h--s~Vt 1050 (1074)
.+..+...-..+.||.+++..+.|+| +.. .+|+||.|++|-||.....+++.....- ..|.
T Consensus 250 ieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~ 329 (942)
T KOG0973|consen 250 IERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIV 329 (942)
T ss_pred EecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCcee
Confidence 99988888888999999999999987 111 5789999999999999888887665432 4599
Q ss_pred EEEEc--CCEEEEEECCCcEEEEe
Q 001455 1051 SLLTA--NDIVLCGTETGLIKGWI 1072 (1074)
Q Consensus 1051 sLa~d--g~~LaSGs~DG~IrIWd 1072 (1074)
.++|+ |-.|+.+|.||+|.+..
T Consensus 330 DmsWspdG~~LfacS~DGtV~~i~ 353 (942)
T KOG0973|consen 330 DMSWSPDGFSLFACSLDGTVALIH 353 (942)
T ss_pred eeeEcCCCCeEEEEecCCeEEEEE
Confidence 99987 77999999999998864
No 84
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.83 E-value=7e-18 Score=185.74 Aligned_cols=259 Identities=14% Similarity=0.047 Sum_probs=185.0
Q ss_pred CEEEEEECCCcEEEEECCCCCeeEEEEeccCCCCEEEEEEcCCCCEE-EEEeCCCeEEEEEccCCceEEEEEeccCCCeE
Q 001455 805 GLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESL-LSGSADKTIGVWQMVQRKLELIEVIATKEPIR 883 (1074)
Q Consensus 805 ~~LaSGs~DGtVrIWDl~t~~~~~i~tl~gH~~~VtsLafSpdg~~L-aSGS~DGtIrIWDl~tg~~~~~~~~~h~~~V~ 883 (1074)
..+++++.||.|++||..+++. +..+..|. .+.+++|+|++..+ ++++.++.|++||..+++..............
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~--~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~ 78 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEV--TRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDPELF 78 (300)
T ss_pred cEEEEecCCCEEEEEECCCCce--EEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCccEE
Confidence 4688999999999999988754 56666554 46789999999986 57778999999999988754432222222334
Q ss_pred EEccCCCeEEEE-ecCCeEEEEeCCCc--eeeeecCCCeEEEEEe-CCEE-EEEECCC-cEEEEEccCCceeeecccccc
Q 001455 884 KLDTYGKTIFAS-TQGHRMKVIDSSRT--LKDIYRSKGIKSMSVV-QGKI-YIGCMDS-SIQELAVSNNVEREIKAPFKS 957 (1074)
Q Consensus 884 s~s~dg~~L~sg-S~DgtI~VWDl~~~--l~~l~~~~~V~sLa~s-dgkL-laGs~Dg-sI~IwDl~tg~~~~i~~~~r~ 957 (1074)
.++++++.++++ +.++.+++||+... ...+.....+.+++++ +|.+ +++..++ .+..||..++......
T Consensus 79 ~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~----- 153 (300)
T TIGR03866 79 ALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNV----- 153 (300)
T ss_pred EECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEE-----
Confidence 578888877655 56889999999742 2333334456788886 7764 4455554 5777898876543211
Q ss_pred ccCCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEccCCC-------CCeEEEEEecCCCEEEE-EECCCcE
Q 001455 958 WRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKG-------TTIQAMAVVEDFIYLNY-NSSASSL 1029 (1074)
Q Consensus 958 ~~~h~~~I~sL~~spd~i~las~S~dDgtI~IWDl~t~~~i~~l~gH~-------~~VtsLafSPDG~~LaS-GS~DGtI 1029 (1074)
.....+..+.+++++.+++..+..++.|++||..+++....+..+. .....++|+|+|++++. .+.++.|
T Consensus 154 --~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i 231 (300)
T TIGR03866 154 --LVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRV 231 (300)
T ss_pred --EcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeE
Confidence 1123456789999998776555467899999999887766543221 12356889999998654 4457789
Q ss_pred EEEECCCCcEEEEEeCCCCeEEEEEc--CCEEEEE-ECCCcEEEEec
Q 001455 1030 QIWLRGTQQKVGRISAGSKITSLLTA--NDIVLCG-TETGLIKGWIP 1073 (1074)
Q Consensus 1030 rIWDl~tg~~l~tL~~hs~VtsLa~d--g~~LaSG-s~DG~IrIWdi 1073 (1074)
.+||..+++.+..+..++.+.+++|+ |++|+++ +.+|.|++||+
T Consensus 232 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~ 278 (300)
T TIGR03866 232 AVVDAKTYEVLDYLLVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDV 278 (300)
T ss_pred EEEECCCCcEEEEEEeCCCcceEEECCCCCEEEEEcCCCCeEEEEEC
Confidence 99999999888777655678887775 6788876 56999999996
No 85
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.83 E-value=6.5e-19 Score=197.23 Aligned_cols=271 Identities=15% Similarity=0.258 Sum_probs=210.0
Q ss_pred CCCCCcEEEEEEe--CCEEEEEECCCcEEEEECCCCCee--EE-------------EEe-ccCCCCEEEEEEcCCCCEEE
Q 001455 791 HKCSGAVTALIYY--KGLLCSGFSDGSIKMWDIKKQSAM--LV-------------WDV-KEHRKAVTSFSLFEPGESLL 852 (1074)
Q Consensus 791 ~gH~~~VtsLafS--~~~LaSGs~DGtVrIWDl~t~~~~--~i-------------~tl-~gH~~~VtsLafSpdg~~La 852 (1074)
..|.-+|++++++ +.+.++++.||+|.=|++.+++.. .+ ..- ++|.+.|.+++.++||++|+
T Consensus 139 ~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkyla 218 (479)
T KOG0299|consen 139 GKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLA 218 (479)
T ss_pred ccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEE
Confidence 3789999999999 458999999999999999876521 00 001 37889999999999999999
Q ss_pred EEeCCCeEEEEEccCCceEEEEEeccCCCeEEE--ccCCCeEEEEecCCeEEEEeCCC--ceeeeecC-CCeEEEEEe-C
Q 001455 853 SGSADKTIGVWQMVQRKLELIEVIATKEPIRKL--DTYGKTIFASTQGHRMKVIDSSR--TLKDIYRS-KGIKSMSVV-Q 926 (1074)
Q Consensus 853 SGS~DGtIrIWDl~tg~~~~~~~~~h~~~V~s~--s~dg~~L~sgS~DgtI~VWDl~~--~l~~l~~~-~~V~sLa~s-d 926 (1074)
+|+.|..|.||+.++.+... .+.+|.+.|.++ ....+.+++++.|++|++|+++. ...+++++ ..|..+... -
T Consensus 219 tgg~d~~v~Iw~~~t~ehv~-~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~r 297 (479)
T KOG0299|consen 219 TGGRDRHVQIWDCDTLEHVK-VFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDALSR 297 (479)
T ss_pred ecCCCceEEEecCcccchhh-cccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeechhcc
Confidence 99999999999999987543 357899999864 56677999999999999999983 44555554 458787775 6
Q ss_pred CEEEE-EECCCcEEEEEccCCceeeeccccccccCCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEcc-CC
Q 001455 927 GKIYI-GCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAP-EK 1004 (1074)
Q Consensus 927 gkLla-Gs~DgsI~IwDl~tg~~~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S~dDgtI~IWDl~t~~~i~~l~-gH 1004 (1074)
+++++ |+.|+++++|++...... .+.++...+.++++-.+..++. ++ ++|.|.+|++...+++.+.. .|
T Consensus 298 eR~vtVGgrDrT~rlwKi~eesql-------ifrg~~~sidcv~~In~~Hfvs-GS-dnG~IaLWs~~KKkplf~~~~AH 368 (479)
T KOG0299|consen 298 ERCVTVGGRDRTVRLWKIPEESQL-------IFRGGEGSIDCVAFINDEHFVS-GS-DNGSIALWSLLKKKPLFTSRLAH 368 (479)
T ss_pred cceEEeccccceeEEEecccccee-------eeeCCCCCeeeEEEecccceee-cc-CCceEEEeeecccCceeEeeccc
Confidence 67776 779999999999653332 2356678899999988776654 44 78999999987776554332 22
Q ss_pred -----------CCCeEEEEEecCCCEEEEEECCCcEEEEECCCC----cEEEEEeCCCCeEEEEEc--CCEEEE-EECCC
Q 001455 1005 -----------GTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQ----QKVGRISAGSKITSLLTA--NDIVLC-GTETG 1066 (1074)
Q Consensus 1005 -----------~~~VtsLafSPDG~~LaSGS~DGtIrIWDl~tg----~~l~tL~~hs~VtsLa~d--g~~LaS-Gs~DG 1066 (1074)
..+|++++..|...++++|+.+|.|++|.+.++ +++..+...+.|++++|. |+.+++ .+...
T Consensus 369 gv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~f~~sgk~ivagiGkEh 448 (479)
T KOG0299|consen 369 GVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSLVGFVNSLAFSNSGKRIVAGIGKEH 448 (479)
T ss_pred cccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecccccEEEEEEEccCCCEEEEeccccc
Confidence 128999999999999999999999999998877 557777777789998875 674544 44444
Q ss_pred cEEEE
Q 001455 1067 LIKGW 1071 (1074)
Q Consensus 1067 ~IrIW 1071 (1074)
.+--|
T Consensus 449 RlGRW 453 (479)
T KOG0299|consen 449 RLGRW 453 (479)
T ss_pred cccee
Confidence 44444
No 86
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.83 E-value=6.7e-20 Score=202.59 Aligned_cols=234 Identities=12% Similarity=0.189 Sum_probs=191.7
Q ss_pred CCCCcEEEEEEe--CCEEEEEECCCcEEEEECCCCCeeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEccCCc
Q 001455 792 KCSGAVTALIYY--KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRK 869 (1074)
Q Consensus 792 gH~~~VtsLafS--~~~LaSGs~DGtVrIWDl~t~~~~~i~tl~gH~~~VtsLafSpdg~~LaSGS~DGtIrIWDl~tg~ 869 (1074)
|-.++|+++.|. +..+++++.|+.+++|+++..+. .+++.||++.|+++.|......+++|+.|.+|+.||+....
T Consensus 217 Gs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~--~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~ 294 (459)
T KOG0288|consen 217 GSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRL--RHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAY 294 (459)
T ss_pred ccCCCcceeeecCCCceEEeecCCCceeeeeccchhh--hhhhcccccceeeehhhccccceeeccccchhhhhhhhhhh
Confidence 668899999999 45799999999999999998754 78999999999999998877779999999999999999876
Q ss_pred eEEEEEeccCCCeEEEccCCCeEEEEecCCeEEEEeCC--CceeeeecCCCeEEEEEe-CCE-EEEEECCCcEEEEEccC
Q 001455 870 LELIEVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSS--RTLKDIYRSKGIKSMSVV-QGK-IYIGCMDSSIQELAVSN 945 (1074)
Q Consensus 870 ~~~~~~~~h~~~V~s~s~dg~~L~sgS~DgtI~VWDl~--~~l~~l~~~~~V~sLa~s-dgk-LlaGs~DgsI~IwDl~t 945 (1074)
+.....+ ...+..+...+..+++|-.|++|++||.+ ........++.|+++..+ +|. +++.+.|.++.++|+++
T Consensus 295 C~kt~l~--~S~cnDI~~~~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt 372 (459)
T KOG0288|consen 295 CSKTVLP--GSQCNDIVCSISDVISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRT 372 (459)
T ss_pred eeccccc--cccccceEecceeeeecccccceEEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCCceeeeeccc
Confidence 5443332 23333344447788899999999999987 455566667789999997 555 88889999999999999
Q ss_pred CceeeeccccccccCCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEccCCCC--CeEEEEEecCCCEEEEE
Q 001455 946 NVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGT--TIQAMAVVEDFIYLNYN 1023 (1074)
Q Consensus 946 g~~~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S~dDgtI~IWDl~t~~~i~~l~gH~~--~VtsLafSPDG~~LaSG 1023 (1074)
......+....... ....+.+.|+|++.|+++++ .||.|+||++.++++...+..... .|+++.|+|.|.+++++
T Consensus 373 ~eI~~~~sA~g~k~--asDwtrvvfSpd~~YvaAGS-~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsa 449 (459)
T KOG0288|consen 373 KEIRQTFSAEGFKC--ASDWTRVVFSPDGSYVAAGS-ADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSA 449 (459)
T ss_pred ccEEEEeecccccc--ccccceeEECCCCceeeecc-CCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcc
Confidence 77654443222222 33488899999999999988 778999999999998887766554 49999999999999999
Q ss_pred ECCCcEEEE
Q 001455 1024 SSASSLQIW 1032 (1074)
Q Consensus 1024 S~DGtIrIW 1032 (1074)
+.++.+.+|
T Consensus 450 dk~~~v~lW 458 (459)
T KOG0288|consen 450 DKQKAVTLW 458 (459)
T ss_pred cCCcceEec
Confidence 999999999
No 87
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=3.5e-17 Score=168.80 Aligned_cols=277 Identities=15% Similarity=0.127 Sum_probs=202.3
Q ss_pred CCCcEEEEEEe--CCEEEEEECCCcEEEEECCC------C----Ce---eEEEEeccCCCCEEEEEEcCCCCEEEEEeCC
Q 001455 793 CSGAVTALIYY--KGLLCSGFSDGSIKMWDIKK------Q----SA---MLVWDVKEHRKAVTSFSLFEPGESLLSGSAD 857 (1074)
Q Consensus 793 H~~~VtsLafS--~~~LaSGs~DGtVrIWDl~t------~----~~---~~i~tl~gH~~~VtsLafSpdg~~LaSGS~D 857 (1074)
.+..|.+++|+ +++.+.|+...+.+|.-.-. . +. .....-+.|.+.|.|.+|+|+|..|++|++|
T Consensus 31 dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsnd 110 (350)
T KOG0641|consen 31 DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSND 110 (350)
T ss_pred chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCC
Confidence 36789999999 77899999999999875321 1 11 1223345789999999999999999999999
Q ss_pred CeEEEEEccCCceE----EEEEeccCCCeEEEc------cCCCeEEEEe-cCCeEEEEeCC--CceeeeecC-CCeEEE-
Q 001455 858 KTIGVWQMVQRKLE----LIEVIATKEPIRKLD------TYGKTIFAST-QGHRMKVIDSS--RTLKDIYRS-KGIKSM- 922 (1074)
Q Consensus 858 GtIrIWDl~tg~~~----~~~~~~h~~~V~s~s------~dg~~L~sgS-~DgtI~VWDl~--~~l~~l~~~-~~V~sL- 922 (1074)
++|++.-++...+. -..+.-|...|..+. ..+..+++++ .|..|++-|-. .....+.++ +.|..+
T Consensus 111 k~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilaly 190 (350)
T KOG0641|consen 111 KTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILALY 190 (350)
T ss_pred ceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEEE
Confidence 99999876543321 123445777777542 2233555544 45566666655 233444443 345444
Q ss_pred EEeCCEEEEEECCCcEEEEEccCCceeeeccccccccC---CCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEE
Q 001455 923 SVVQGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRL---QSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQIS 999 (1074)
Q Consensus 923 a~sdgkLlaGs~DgsI~IwDl~tg~~~~i~~~~r~~~~---h~~~I~sL~~spd~i~las~S~dDgtI~IWDl~t~~~i~ 999 (1074)
.|++-.+++|+.|.+|++||++-........ ..+.. ....|.++++.|.|..++++. .|....+||++.++.++
T Consensus 191 swn~~m~~sgsqdktirfwdlrv~~~v~~l~--~~~~~~glessavaav~vdpsgrll~sg~-~dssc~lydirg~r~iq 267 (350)
T KOG0641|consen 191 SWNGAMFASGSQDKTIRFWDLRVNSCVNTLD--NDFHDGGLESSAVAAVAVDPSGRLLASGH-ADSSCMLYDIRGGRMIQ 267 (350)
T ss_pred EecCcEEEccCCCceEEEEeeeccceeeecc--CcccCCCcccceeEEEEECCCcceeeecc-CCCceEEEEeeCCceee
Confidence 3445557779999999999998765533221 11122 247899999999999999887 78899999999999999
Q ss_pred EccCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCC----cEEEEEeCC-CCeEEEEEcCC--EEEEEECCCcEEEEe
Q 001455 1000 IAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQ----QKVGRISAG-SKITSLLTAND--IVLCGTETGLIKGWI 1072 (1074)
Q Consensus 1000 ~l~gH~~~VtsLafSPDG~~LaSGS~DGtIrIWDl~tg----~~l~tL~~h-s~VtsLa~dg~--~LaSGs~DG~IrIWd 1072 (1074)
.+..|...|+++.|||...|+++++.|..|++-|+... -++.....| .++..+.|+++ .+++.+.|.++.+|-
T Consensus 268 ~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa 347 (350)
T KOG0641|consen 268 RFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWA 347 (350)
T ss_pred eeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEec
Confidence 99999999999999999999999999999999987542 123344445 45666778755 788999999999995
No 88
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.81 E-value=1.3e-18 Score=196.03 Aligned_cols=232 Identities=16% Similarity=0.209 Sum_probs=191.6
Q ss_pred CCCcEEEEEEe--CCEEEEEECCCcEEEEECCCCCeeEEEEeccCCCCEEEEEEcCCCCE-EEEEeCCCeEEEEEccCCc
Q 001455 793 CSGAVTALIYY--KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGES-LLSGSADKTIGVWQMVQRK 869 (1074)
Q Consensus 793 H~~~VtsLafS--~~~LaSGs~DGtVrIWDl~t~~~~~i~tl~gH~~~VtsLafSpdg~~-LaSGS~DGtIrIWDl~tg~ 869 (1074)
-.+.|.+++|. |.++|+|...|.|+|||.++. ..+..+.+|+.+|..+.|+|.+.. +++|++|+.+++||+.+..
T Consensus 67 Fk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r--~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~ 144 (487)
T KOG0310|consen 67 FKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSR--VILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAY 144 (487)
T ss_pred hccceeEEEeecCCeEEEccCCcCcEEEeccccH--HHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcE
Confidence 36789999998 447889999999999997653 246778999999999999997766 8899999999999999887
Q ss_pred eEEEEEeccCCCeEEEc---cCCCeEEEEecCCeEEEEeCCC---ceeeeecCCCeEEEEE-eCCEEEEEECCCcEEEEE
Q 001455 870 LELIEVIATKEPIRKLD---TYGKTIFASTQGHRMKVIDSSR---TLKDIYRSKGIKSMSV-VQGKIYIGCMDSSIQELA 942 (1074)
Q Consensus 870 ~~~~~~~~h~~~V~s~s---~dg~~L~sgS~DgtI~VWDl~~---~l~~l~~~~~V~sLa~-sdgkLlaGs~DgsI~IwD 942 (1074)
. .....+|++.|.+.+ .++..+++|+.||.|++||.+. ....+.++.+|..+.+ +.|.+++.+....|++||
T Consensus 145 v-~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAgGn~vkVWD 223 (487)
T KOG0310|consen 145 V-QAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAGGNSVKVWD 223 (487)
T ss_pred E-EEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcCCCeEEEEE
Confidence 4 557789999999854 3455899999999999999883 3455667788998888 577777777778999999
Q ss_pred ccCCceeeeccccccccCCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEccCCCCCeEEEEEecCCCEEEE
Q 001455 943 VSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNY 1022 (1074)
Q Consensus 943 l~tg~~~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S~dDgtI~IWDl~t~~~i~~l~gH~~~VtsLafSPDG~~LaS 1022 (1074)
+.+|..... ....|...|+|+.+..++..+++++ =|+.+++||+.+.+.+..+ .-.++|.+++.+|+++.++.
T Consensus 224 l~~G~qll~-----~~~~H~KtVTcL~l~s~~~rLlS~s-LD~~VKVfd~t~~Kvv~s~-~~~~pvLsiavs~dd~t~vi 296 (487)
T KOG0310|consen 224 LTTGGQLLT-----SMFNHNKTVTCLRLASDSTRLLSGS-LDRHVKVFDTTNYKVVHSW-KYPGPVLSIAVSPDDQTVVI 296 (487)
T ss_pred ecCCceehh-----hhhcccceEEEEEeecCCceEeecc-cccceEEEEccceEEEEee-ecccceeeEEecCCCceEEE
Confidence 997765433 1234889999999999999998887 6789999998887777665 45678999999999999999
Q ss_pred EECCCcEEEEEC
Q 001455 1023 NSSASSLQIWLR 1034 (1074)
Q Consensus 1023 GS~DGtIrIWDl 1034 (1074)
|..||.+-+-+.
T Consensus 297 GmsnGlv~~rr~ 308 (487)
T KOG0310|consen 297 GMSNGLVSIRRR 308 (487)
T ss_pred ecccceeeeehh
Confidence 999999887743
No 89
>PTZ00421 coronin; Provisional
Probab=99.81 E-value=6.6e-18 Score=201.73 Aligned_cols=221 Identities=14% Similarity=0.163 Sum_probs=164.2
Q ss_pred CCCCCcEEEEEEe---CCEEEEEECCCcEEEEECCCCCe-----eEEEEeccCCCCEEEEEEcCCC-CEEEEEeCCCeEE
Q 001455 791 HKCSGAVTALIYY---KGLLCSGFSDGSIKMWDIKKQSA-----MLVWDVKEHRKAVTSFSLFEPG-ESLLSGSADKTIG 861 (1074)
Q Consensus 791 ~gH~~~VtsLafS---~~~LaSGs~DGtVrIWDl~t~~~-----~~i~tl~gH~~~VtsLafSpdg-~~LaSGS~DGtIr 861 (1074)
.+|.+.|++++|+ +++|++|+.||+|++||+.++.. ..+..+.+|...|.+++|+|++ ..|++|+.|++|+
T Consensus 72 ~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVr 151 (493)
T PTZ00421 72 LGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVN 151 (493)
T ss_pred eCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEE
Confidence 3899999999998 35899999999999999976421 2467789999999999999986 5899999999999
Q ss_pred EEEccCCceEEEEEeccCCCeEE--EccCCCeEEEEecCCeEEEEeCCC--ceeeeecCCC--eEEEEEe--CCEEEEEE
Q 001455 862 VWQMVQRKLELIEVIATKEPIRK--LDTYGKTIFASTQGHRMKVIDSSR--TLKDIYRSKG--IKSMSVV--QGKIYIGC 933 (1074)
Q Consensus 862 IWDl~tg~~~~~~~~~h~~~V~s--~s~dg~~L~sgS~DgtI~VWDl~~--~l~~l~~~~~--V~sLa~s--dgkLlaGs 933 (1074)
|||+.+++... ....|...|.+ |++++..+++++.|++|++||++. ....+..+.. +..+.|. .+.+++++
T Consensus 152 IWDl~tg~~~~-~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G 230 (493)
T PTZ00421 152 VWDVERGKAVE-VIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLG 230 (493)
T ss_pred EEECCCCeEEE-EEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEe
Confidence 99999887543 44568888876 578899999999999999999973 2333333332 3344554 45566543
Q ss_pred ----CCCcEEEEEccCCceeeeccccccccC-CCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEcc-CCCCC
Q 001455 934 ----MDSSIQELAVSNNVEREIKAPFKSWRL-QSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAP-EKGTT 1007 (1074)
Q Consensus 934 ----~DgsI~IwDl~tg~~~~i~~~~r~~~~-h~~~I~sL~~spd~i~las~S~dDgtI~IWDl~t~~~i~~l~-gH~~~ 1007 (1074)
.|+.|++||+++..... ..... ....+....+++++.+++.++..|+.|++||+.++..+.... .+..+
T Consensus 231 ~s~s~Dr~VklWDlr~~~~p~-----~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~ 305 (493)
T PTZ00421 231 CSKSQQRQIMLWDTRKMASPY-----STVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEP 305 (493)
T ss_pred cCCCCCCeEEEEeCCCCCCce-----eEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCC
Confidence 47999999998643211 11122 233455567788888777766568999999999888765543 34556
Q ss_pred eEEEEEecCC
Q 001455 1008 IQAMAVVEDF 1017 (1074)
Q Consensus 1008 VtsLafSPDG 1017 (1074)
+..++|.|.-
T Consensus 306 ~~g~~~~pk~ 315 (493)
T PTZ00421 306 HKGLCMMPKW 315 (493)
T ss_pred CcceEecccc
Confidence 7888888843
No 90
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.81 E-value=1.1e-18 Score=186.92 Aligned_cols=276 Identities=10% Similarity=0.187 Sum_probs=209.5
Q ss_pred ecCCCCCcEEEEEEe--CCEEEEEECCCcEEEEECCCCCeeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEE--
Q 001455 789 ASHKCSGAVTALIYY--KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQ-- 864 (1074)
Q Consensus 789 ~~~gH~~~VtsLafS--~~~LaSGs~DGtVrIWDl~t~~~~~i~tl~gH~~~VtsLafSpdg~~LaSGS~DGtIrIWD-- 864 (1074)
...||.+.|+.++.. ...+.+++.|.+.+||.++++.+ +.++.||.+.|++++|++.+..+++++.|++..||.
T Consensus 143 e~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~C--L~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~a 220 (481)
T KOG0300|consen 143 ELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGAC--LATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAA 220 (481)
T ss_pred hhcccccceeeehhhcCCcceeecccccceeEEeeccccc--eeeecccccceeeEEeccccceEEEccCCcchHHHHHh
Confidence 344999999999998 44799999999999999999976 788999999999999999999999999999999997
Q ss_pred ----ccCC--------c-------------------------eEEEEEeccCCCeEE--EccCCCeEEEEecCCeEEEEe
Q 001455 865 ----MVQR--------K-------------------------LELIEVIATKEPIRK--LDTYGKTIFASTQGHRMKVID 905 (1074)
Q Consensus 865 ----l~tg--------~-------------------------~~~~~~~~h~~~V~s--~s~dg~~L~sgS~DgtI~VWD 905 (1074)
+... + .....+.+|...|.+ +-..|+.++++++|.+-.+||
T Consensus 221 v~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwD 300 (481)
T KOG0300|consen 221 VNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWD 300 (481)
T ss_pred hcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeee
Confidence 2110 0 011223455555554 446788999999999999999
Q ss_pred CCC--ceeeeecCCC-eE-EEEEeCCE-EEEEECCCcEEEEEccCCceeeeccccccccCCCCCeEEEEEcCCceEEEEE
Q 001455 906 SSR--TLKDIYRSKG-IK-SMSVVQGK-IYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASS 980 (1074)
Q Consensus 906 l~~--~l~~l~~~~~-V~-sLa~sdgk-LlaGs~DgsI~IwDl~tg~~~~i~~~~r~~~~h~~~I~sL~~spd~i~las~ 980 (1074)
++. .+..+.++.. .+ |...+..+ +++.+.|.+.++||++.. ...+..|++|...|++..|..+... +++
T Consensus 301 VEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFRea-----I~sV~VFQGHtdtVTS~vF~~dd~v-VSg 374 (481)
T KOG0300|consen 301 VETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREA-----IQSVAVFQGHTDTVTSVVFNTDDRV-VSG 374 (481)
T ss_pred eccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhh-----cceeeeecccccceeEEEEecCCce-eec
Confidence 983 3344444433 33 33335555 556899999999999842 1234678999999999999987664 444
Q ss_pred ecCCCeEEEEECCCCC-eEEEccCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCcEEE----EEeCCCC-eEEEEE
Q 001455 981 SVEGSNIKEWRRHRKP-QISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVG----RISAGSK-ITSLLT 1054 (1074)
Q Consensus 981 S~dDgtI~IWDl~t~~-~i~~l~gH~~~VtsLafSPDG~~LaSGS~DGtIrIWDl~tg~~l~----tL~~hs~-VtsLa~ 1054 (1074)
+ +|.+|++||+.+-. .+.++ ....+++.++.+..+..|+.--.+..|++||++....-+ .-++|.. |+|.+|
T Consensus 375 S-DDrTvKvWdLrNMRsplATI-RtdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW 452 (481)
T KOG0300|consen 375 S-DDRTVKVWDLRNMRSPLATI-RTDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAW 452 (481)
T ss_pred C-CCceEEEeeeccccCcceee-ecCCccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeec
Confidence 4 89999999987643 34443 245678999999989999999999999999987654321 2235644 999999
Q ss_pred cCC----EEEEEECCCcEEEEecC
Q 001455 1055 AND----IVLCGTETGLIKGWIPL 1074 (1074)
Q Consensus 1055 dg~----~LaSGs~DG~IrIWdil 1074 (1074)
... -|+++|.|..+.-|++.
T Consensus 453 ~eehp~cnLftcGFDR~v~gW~in 476 (481)
T KOG0300|consen 453 LEEHPACNLFTCGFDRMVAGWKIN 476 (481)
T ss_pred cccCcccccccccccceeeeeEec
Confidence 733 68899999999999873
No 91
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.81 E-value=4.4e-19 Score=204.65 Aligned_cols=231 Identities=17% Similarity=0.242 Sum_probs=181.5
Q ss_pred EEEEc-CCCCEEEEEeCCCeEEEEEccCCceE-----EEEEeccCCCeEE--EccCCCeEEEEecCCeEEEEeCCCc---
Q 001455 841 SFSLF-EPGESLLSGSADKTIGVWQMVQRKLE-----LIEVIATKEPIRK--LDTYGKTIFASTQGHRMKVIDSSRT--- 909 (1074)
Q Consensus 841 sLafS-pdg~~LaSGS~DGtIrIWDl~tg~~~-----~~~~~~h~~~V~s--~s~dg~~L~sgS~DgtI~VWDl~~~--- 909 (1074)
.+..+ |.+++|+|||.||.|++|++....-. ......|.+.|.. +..+++.+++++.|.+|++|+....
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~ 108 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTF 108 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcch
Confidence 34444 56677999999999999998753321 2233356666654 4578889999999999999998733
Q ss_pred -eeeeec-CCCeEEEEEe--CCE-EEEEECCCcEEEEEccCCce--ee--ecccccccc-CCCCCeEEEEEcCCceEEEE
Q 001455 910 -LKDIYR-SKGIKSMSVV--QGK-IYIGCMDSSIQELAVSNNVE--RE--IKAPFKSWR-LQSKPINSLVVYKDWLYSAS 979 (1074)
Q Consensus 910 -l~~l~~-~~~V~sLa~s--dgk-LlaGs~DgsI~IwDl~tg~~--~~--i~~~~r~~~-~h~~~I~sL~~spd~i~las 979 (1074)
..++.. ...|.|+++. +.. +++||-|+.|.+||+.++.. .. -..+..... ++..+|++++.++.+..+++
T Consensus 109 c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivs 188 (735)
T KOG0308|consen 109 CMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVS 188 (735)
T ss_pred hHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEe
Confidence 344443 4579999994 444 55699999999999998733 10 011112222 67889999999999988887
Q ss_pred EecCCCeEEEEECCCCCeEEEccCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCC-eEEEEEcCC-
Q 001455 980 SSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAGSK-ITSLLTAND- 1057 (1074)
Q Consensus 980 ~S~dDgtI~IWDl~t~~~i~~l~gH~~~VtsLafSPDG~~LaSGS~DGtIrIWDl~tg~~l~tL~~hs~-VtsLa~dg~- 1057 (1074)
++ ..+-+++||..++..+..+.||...|..+..++||..++|+|.||+|++||+...+++.++..|.. |+++..++.
T Consensus 189 Gg-tek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf 267 (735)
T KOG0308|consen 189 GG-TEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSF 267 (735)
T ss_pred cC-cccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCc
Confidence 76 557899999999988888889999999999999999999999999999999999999999999954 998876654
Q ss_pred -EEEEEECCCcEEEEe
Q 001455 1058 -IVLCGTETGLIKGWI 1072 (1074)
Q Consensus 1058 -~LaSGs~DG~IrIWd 1072 (1074)
.+++|+.||.|..=|
T Consensus 268 ~~vYsG~rd~~i~~Td 283 (735)
T KOG0308|consen 268 THVYSGGRDGNIYRTD 283 (735)
T ss_pred ceEEecCCCCcEEecc
Confidence 999999999987533
No 92
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.81 E-value=1.5e-18 Score=194.43 Aligned_cols=247 Identities=15% Similarity=0.187 Sum_probs=186.4
Q ss_pred CCCCcEEEEEEe---CCEEEEEECCCcEEEEECCCCCe--------eEEEEeccCCCCEEEEEEcCCCCE-EEEEeCCCe
Q 001455 792 KCSGAVTALIYY---KGLLCSGFSDGSIKMWDIKKQSA--------MLVWDVKEHRKAVTSFSLFEPGES-LLSGSADKT 859 (1074)
Q Consensus 792 gH~~~VtsLafS---~~~LaSGs~DGtVrIWDl~t~~~--------~~i~tl~gH~~~VtsLafSpdg~~-LaSGS~DGt 859 (1074)
-|.+.|+.+.+- +..+|+++..+.|.|||..+... .+-..+.||.+.=.+++|++.... |++|+.|++
T Consensus 122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~ 201 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHT 201 (422)
T ss_pred cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCc
Confidence 589999999998 55899999999999999865322 233478899998888999987665 999999999
Q ss_pred EEEEEccCCceEEEEEeccCCCeEEEccCCCeEEEEecCCeEEEEeCCCceeeeecCCCeEEEEEe--CCE-EEEEECCC
Q 001455 860 IGVWQMVQRKLELIEVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSSRTLKDIYRSKGIKSMSVV--QGK-IYIGCMDS 936 (1074)
Q Consensus 860 IrIWDl~tg~~~~~~~~~h~~~V~s~s~dg~~L~sgS~DgtI~VWDl~~~l~~l~~~~~V~sLa~s--dgk-LlaGs~Dg 936 (1074)
|++||+...... .....+...+.. +...|..++|. +.. +.+++.|+
T Consensus 202 i~lwdi~~~~~~----~~~~~p~~~~~~---------------------------h~~~VeDV~~h~~h~~lF~sv~dd~ 250 (422)
T KOG0264|consen 202 ICLWDINAESKE----DKVVDPKTIFSG---------------------------HEDVVEDVAWHPLHEDLFGSVGDDG 250 (422)
T ss_pred EEEEeccccccC----CccccceEEeec---------------------------CCcceehhhccccchhhheeecCCC
Confidence 999999764321 000000001111 12346666664 333 55578888
Q ss_pred cEEEEEccCCceeeeccccccccCCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCC-CCeEEEccCCCCCeEEEEEec
Q 001455 937 SIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHR-KPQISIAPEKGTTIQAMAVVE 1015 (1074)
Q Consensus 937 sI~IwDl~tg~~~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S~dDgtI~IWDl~t-~~~i~~l~gH~~~VtsLafSP 1015 (1074)
.+.+||++++. ..+.+...+|..+++++.|+|-+-++++.+..|++|.+||+++ ...+..+.+|...|..+.|||
T Consensus 251 ~L~iwD~R~~~----~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSP 326 (422)
T KOG0264|consen 251 KLMIWDTRSNT----SKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSP 326 (422)
T ss_pred eEEEEEcCCCC----CCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCC
Confidence 99999998642 1223455788999999999998777776666899999999765 457889999999999999999
Q ss_pred C-CCEEEEEECCCcEEEEECCCC--------------cEEEEEeCC-CCeEEEEEcCC---EEEEEECCCcEEEEec
Q 001455 1016 D-FIYLNYNSSASSLQIWLRGTQ--------------QKVGRISAG-SKITSLLTAND---IVLCGTETGLIKGWIP 1073 (1074)
Q Consensus 1016 D-G~~LaSGS~DGtIrIWDl~tg--------------~~l~tL~~h-s~VtsLa~dg~---~LaSGs~DG~IrIWdi 1073 (1074)
+ ...|||++.|+.+.|||+..- +++....|| ..|..++|++. .|+|.+.|+.+.||+|
T Consensus 327 h~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~ 403 (422)
T KOG0264|consen 327 HNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQM 403 (422)
T ss_pred CCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeec
Confidence 5 567899999999999997542 224555667 45999999854 9999999999999987
No 93
>PTZ00420 coronin; Provisional
Probab=99.81 E-value=1.5e-17 Score=200.06 Aligned_cols=222 Identities=12% Similarity=0.161 Sum_probs=145.6
Q ss_pred CCCCCcEEEEEEe---CCEEEEEECCCcEEEEECCCCCe------eEEEEeccCCCCEEEEEEcCCCCE-EEEEeCCCeE
Q 001455 791 HKCSGAVTALIYY---KGLLCSGFSDGSIKMWDIKKQSA------MLVWDVKEHRKAVTSFSLFEPGES-LLSGSADKTI 860 (1074)
Q Consensus 791 ~gH~~~VtsLafS---~~~LaSGs~DGtVrIWDl~t~~~------~~i~tl~gH~~~VtsLafSpdg~~-LaSGS~DGtI 860 (1074)
.+|.+.|++++|+ +++|+||+.||+|+|||+.++.. .++..+.+|...|.+++|+|++.. |+||+.||+|
T Consensus 71 ~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtI 150 (568)
T PTZ00420 71 KGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFV 150 (568)
T ss_pred cCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeE
Confidence 3899999999999 35899999999999999975421 134567899999999999999987 5799999999
Q ss_pred EEEEccCCceEEEEEeccCCCeEE--EccCCCeEEEEecCCeEEEEeCCCceeeeecCCCeEEEEEeCCEEEEEECCCcE
Q 001455 861 GVWQMVQRKLELIEVIATKEPIRK--LDTYGKTIFASTQGHRMKVIDSSRTLKDIYRSKGIKSMSVVQGKIYIGCMDSSI 938 (1074)
Q Consensus 861 rIWDl~tg~~~~~~~~~h~~~V~s--~s~dg~~L~sgS~DgtI~VWDl~~~l~~l~~~~~V~sLa~sdgkLlaGs~DgsI 938 (1074)
++||+++++..... .+...|.+ |+++|..++++ +.|+.|
T Consensus 151 rIWDl~tg~~~~~i--~~~~~V~SlswspdG~lLat~-------------------------------------s~D~~I 191 (568)
T PTZ00420 151 NIWDIENEKRAFQI--NMPKKLSSLKWNIKGNLLSGT-------------------------------------CVGKHM 191 (568)
T ss_pred EEEECCCCcEEEEE--ecCCcEEEEEECCCCCEEEEE-------------------------------------ecCCEE
Confidence 99999987643221 12333433 23444444444 445555
Q ss_pred EEEEccCCceeeeccccccccCCCCCeEE-----EEEcCCceEEEEEecCC---CeEEEEECCC-CCeEEEccC--CCCC
Q 001455 939 QELAVSNNVEREIKAPFKSWRLQSKPINS-----LVVYKDWLYSASSSVEG---SNIKEWRRHR-KPQISIAPE--KGTT 1007 (1074)
Q Consensus 939 ~IwDl~tg~~~~i~~~~r~~~~h~~~I~s-----L~~spd~i~las~S~dD---gtI~IWDl~t-~~~i~~l~g--H~~~ 1007 (1074)
++||++++.... .+.+|...+.+ ..+++++.++++++.++ ++|++||++. +..+..... +.+.
T Consensus 192 rIwD~Rsg~~i~------tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~ 265 (568)
T PTZ00420 192 HIIDPRKQEIAS------SFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAP 265 (568)
T ss_pred EEEECCCCcEEE------EEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccc
Confidence 555555543321 12334333222 23456777777766443 4799999874 455544432 3333
Q ss_pred eEEEEEecCCCEEEEEECCCcEEEEECCCCcE--EEEEeCCCCeEEEEEcCC
Q 001455 1008 IQAMAVVEDFIYLNYNSSASSLQIWLRGTQQK--VGRISAGSKITSLLTAND 1057 (1074)
Q Consensus 1008 VtsLafSPDG~~LaSGS~DGtIrIWDl~tg~~--l~tL~~hs~VtsLa~dg~ 1057 (1074)
+......++|.++++|+.|++|++|++..+.. +..+....++.+++|-++
T Consensus 266 L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~~~l~~~~s~~p~~g~~f~Pk 317 (568)
T PTZ00420 266 LIPHYDESTGLIYLIGKGDGNCRYYQHSLGSIRKVNEYKSCSPFRSFGFLPK 317 (568)
T ss_pred eEEeeeCCCCCEEEEEECCCeEEEEEccCCcEEeecccccCCCccceEEccc
Confidence 44444456799999999999999999877642 223232244677776644
No 94
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.81 E-value=2.5e-17 Score=194.68 Aligned_cols=276 Identities=17% Similarity=0.230 Sum_probs=199.8
Q ss_pred CCCCCcEEEEEEeC--CEEEEEECCCcEEEEECCCCCeeEEEEeccCCCCEEEEEEcCCCCE-EEEEeCCCeEEEEEccC
Q 001455 791 HKCSGAVTALIYYK--GLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGES-LLSGSADKTIGVWQMVQ 867 (1074)
Q Consensus 791 ~gH~~~VtsLafS~--~~LaSGs~DGtVrIWDl~t~~~~~i~tl~gH~~~VtsLafSpdg~~-LaSGS~DGtIrIWDl~t 867 (1074)
+++.+.|+++.-++ +.+|.|..+|+|.|+|++.++. +.+|+...+.|++++|..||+. +++|+..|.+.+||++.
T Consensus 199 ~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dki--l~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~ 276 (910)
T KOG1539|consen 199 QEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKI--LMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEK 276 (910)
T ss_pred cccccceeEeccCCcceEEEEeccCceEEEEEcccCcE--EEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCC
Confidence 38889999999995 5799999999999999998854 7788655699999999999987 77888889999999988
Q ss_pred CceEEEEEeccCCCeEE--EccCCC-----------------------------------------------eEEEEecC
Q 001455 868 RKLELIEVIATKEPIRK--LDTYGK-----------------------------------------------TIFASTQG 898 (1074)
Q Consensus 868 g~~~~~~~~~h~~~V~s--~s~dg~-----------------------------------------------~L~sgS~D 898 (1074)
.+........|.+.+.. +-+... .+.+++.|
T Consensus 277 kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~D 356 (910)
T KOG1539|consen 277 KKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQD 356 (910)
T ss_pred CeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccC
Confidence 77655444444333321 122222 33344444
Q ss_pred CeEEEEeC-----------------------------------------------------------------CCce---
Q 001455 899 HRMKVIDS-----------------------------------------------------------------SRTL--- 910 (1074)
Q Consensus 899 gtI~VWDl-----------------------------------------------------------------~~~l--- 910 (1074)
++++.+++ +...
T Consensus 357 rt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~ 436 (910)
T KOG1539|consen 357 RTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGR 436 (910)
T ss_pred cchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCccccc
Confidence 43333221 1000
Q ss_pred eeeecC------CCeEEEEEe-CCE-EEEEECCCcEEEEEccCCceeeeccccccccCCCCCeEEEEEcCCceEEEEEec
Q 001455 911 KDIYRS------KGIKSMSVV-QGK-IYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSV 982 (1074)
Q Consensus 911 ~~l~~~------~~V~sLa~s-dgk-LlaGs~DgsI~IwDl~tg~~~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S~ 982 (1074)
..+.+. ..+++++.+ -|. .+.|...|.|-+|++++|-....+. .-..|..+|+.++...-+..+++++
T Consensus 437 ~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~---~~~ah~~~V~gla~D~~n~~~vsa~- 512 (910)
T KOG1539|consen 437 HVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFG---DSPAHKGEVTGLAVDGTNRLLVSAG- 512 (910)
T ss_pred EEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccc---cCccccCceeEEEecCCCceEEEcc-
Confidence 001111 225556665 444 5558888999999998876543321 1146788999999988777777666
Q ss_pred CCCeEEEEECCCC-----------------------------------------CeEEEccCCCCCeEEEEEecCCCEEE
Q 001455 983 EGSNIKEWRRHRK-----------------------------------------PQISIAPEKGTTIQAMAVVEDFIYLN 1021 (1074)
Q Consensus 983 dDgtI~IWDl~t~-----------------------------------------~~i~~l~gH~~~VtsLafSPDG~~La 1021 (1074)
.+|.+++||...+ +.++.+.||++.|++++|||||+||+
T Consensus 513 ~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWli 592 (910)
T KOG1539|consen 513 ADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLI 592 (910)
T ss_pred CcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEE
Confidence 4567777775433 34556678999999999999999999
Q ss_pred EEECCCcEEEEECCCCcEEEEEeCCCCeEEEEE--cCCEEEEEECC-CcEEEEe
Q 001455 1022 YNSSASSLQIWLRGTQQKVGRISAGSKITSLLT--ANDIVLCGTET-GLIKGWI 1072 (1074)
Q Consensus 1022 SGS~DGtIrIWDl~tg~~l~tL~~hs~VtsLa~--dg~~LaSGs~D-G~IrIWd 1072 (1074)
+++.|++|++||+.++.++..+....++++++| +|++||+...| .-|++|.
T Consensus 593 sasmD~tIr~wDlpt~~lID~~~vd~~~~sls~SPngD~LAT~Hvd~~gIylWs 646 (910)
T KOG1539|consen 593 SASMDSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGDFLATVHVDQNGIYLWS 646 (910)
T ss_pred EeecCCcEEEEeccCcceeeeEecCCcceeeEECCCCCEEEEEEecCceEEEEE
Confidence 999999999999999999999988888777665 58899999998 6699994
No 95
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.80 E-value=1.8e-18 Score=182.18 Aligned_cols=232 Identities=13% Similarity=0.115 Sum_probs=182.5
Q ss_pred EEeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEccCCceEEE-EEeccCCCeEE--E-ccCCCeEEEEecCCeEEEEe
Q 001455 830 WDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELI-EVIATKEPIRK--L-DTYGKTIFASTQGHRMKVID 905 (1074)
Q Consensus 830 ~tl~gH~~~VtsLafSpdg~~LaSGS~DGtIrIWDl~tg~~~~~-~~~~h~~~V~s--~-s~dg~~L~sgS~DgtI~VWD 905 (1074)
+.+++|.+.|.+++|+.+|..|++|+.|+++++|++..++.... ...+|.+.|-. + .++++.+++++.|.+|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 45678999999999999999999999999999999987643222 23366666653 3 36778999999999999999
Q ss_pred CC--CceeeeecCCCeEEEEE-e-CCEEEEEECCCcEEEEEccCCceeeeccccccccCCCCCeEEEEEcCC-ceEEEEE
Q 001455 906 SS--RTLKDIYRSKGIKSMSV-V-QGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKD-WLYSASS 980 (1074)
Q Consensus 906 l~--~~l~~l~~~~~V~sLa~-s-dgkLlaGs~DgsI~IwDl~tg~~~~i~~~~r~~~~h~~~I~sL~~spd-~i~las~ 980 (1074)
.+ ++...+.....-.-+.| | ++.+++|+.|..|.+.|.++.+..... .....++.+.++.+ ..+.++.
T Consensus 94 ~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~-------~~~~e~ne~~w~~~nd~Fflt~ 166 (313)
T KOG1407|consen 94 IRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEE-------QFKFEVNEISWNNSNDLFFLTN 166 (313)
T ss_pred eccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehh-------cccceeeeeeecCCCCEEEEec
Confidence 98 34444444333333444 5 555788999999999999985543321 22456677777744 4444443
Q ss_pred ecCCCeEEEEECCCCCeEEEccCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCcEEEEEeCCC-CeEEEEEc--CC
Q 001455 981 SVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAGS-KITSLLTA--ND 1057 (1074)
Q Consensus 981 S~dDgtI~IWDl~t~~~i~~l~gH~~~VtsLafSPDG~~LaSGS~DGtIrIWDl~tg~~l~tL~~hs-~VtsLa~d--g~ 1057 (1074)
+ -|+|.|.....-+.++.+..|.....++.|+|+|+|+|+|+.|-.+.+||++..-+++.+..+. +|..++|+ |+
T Consensus 167 G--lG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~ 244 (313)
T KOG1407|consen 167 G--LGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGR 244 (313)
T ss_pred C--CceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcc
Confidence 2 5899999988888899999999999999999999999999999999999999999999998875 48888875 89
Q ss_pred EEEEEECCCcEEE
Q 001455 1058 IVLCGTETGLIKG 1070 (1074)
Q Consensus 1058 ~LaSGs~DG~IrI 1070 (1074)
+||+|+.|..|-|
T Consensus 245 ~lASaSEDh~IDI 257 (313)
T KOG1407|consen 245 MLASASEDHFIDI 257 (313)
T ss_pred eeeccCccceEEe
Confidence 9999999998854
No 96
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.80 E-value=1.3e-18 Score=195.14 Aligned_cols=272 Identities=14% Similarity=0.203 Sum_probs=214.4
Q ss_pred CCCCcEEEEEEe--CCEEEEEECCCcEEEEECCCCCee-EEEEec--cCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcc
Q 001455 792 KCSGAVTALIYY--KGLLCSGFSDGSIKMWDIKKQSAM-LVWDVK--EHRKAVTSFSLFEPGESLLSGSADKTIGVWQMV 866 (1074)
Q Consensus 792 gH~~~VtsLafS--~~~LaSGs~DGtVrIWDl~t~~~~-~i~tl~--gH~~~VtsLafSpdg~~LaSGS~DGtIrIWDl~ 866 (1074)
.|..-|.++.++ ...++|||. |-|+|||+.....+ ++..+. .....|.++...|||+.|++||.-.++.|||+.
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLA 495 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLA 495 (705)
T ss_pred ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeecc
Confidence 688999999999 346888775 67999999764321 333333 235679999999999999999999999999998
Q ss_pred CCceEEEEEeccCC---CeEEEccCCCeEEEEecCCeEEEEeCCCc--eeeeec-CCCeEEEEEe-CCE-EEEEECCCcE
Q 001455 867 QRKLELIEVIATKE---PIRKLDTYGKTIFASTQGHRMKVIDSSRT--LKDIYR-SKGIKSMSVV-QGK-IYIGCMDSSI 938 (1074)
Q Consensus 867 tg~~~~~~~~~h~~---~V~s~s~dg~~L~sgS~DgtI~VWDl~~~--l~~l~~-~~~V~sLa~s-dgk-LlaGs~DgsI 938 (1074)
.............. ....++++.+..+++..||.|.|||+... +..+.+ ..++.|+.++ +|. +++|+-|++|
T Consensus 496 apTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntv 575 (705)
T KOG0639|consen 496 APTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTV 575 (705)
T ss_pred CCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccce
Confidence 75532221111111 12246899999999999999999999854 344444 5679999998 554 9999999999
Q ss_pred EEEEccCCceeeeccccccccCCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEccCCCCCeEEEEEecCCC
Q 001455 939 QELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFI 1018 (1074)
Q Consensus 939 ~IwDl~tg~~~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S~dDgtI~IWDl~t~~~i~~l~gH~~~VtsLafSPDG~ 1018 (1074)
+.||++.++..... .....|.++...|.+.+++.+- +.+.+.+....... ...+.-|...|.++.|.+.|+
T Consensus 576 RcWDlregrqlqqh-------dF~SQIfSLg~cP~~dWlavGM-ens~vevlh~skp~-kyqlhlheScVLSlKFa~cGk 646 (705)
T KOG0639|consen 576 RCWDLREGRQLQQH-------DFSSQIFSLGYCPTGDWLAVGM-ENSNVEVLHTSKPE-KYQLHLHESCVLSLKFAYCGK 646 (705)
T ss_pred eehhhhhhhhhhhh-------hhhhhheecccCCCccceeeec-ccCcEEEEecCCcc-ceeecccccEEEEEEecccCc
Confidence 99999997653321 1256889999999999998776 66777777655433 455667999999999999999
Q ss_pred EEEEEECCCcEEEEECCCCcEEEEEeCCCCeEE--EEEcCCEEEEEECCCcEEEEec
Q 001455 1019 YLNYNSSASSLQIWLRGTQQKVGRISAGSKITS--LLTANDIVLCGTETGLIKGWIP 1073 (1074)
Q Consensus 1019 ~LaSGS~DGtIrIWDl~tg~~l~tL~~hs~Vts--La~dg~~LaSGs~DG~IrIWdi 1073 (1074)
|+++.+.|+.+..|...-|..+...+..+.|.+ +++++++|++|+.|....||.+
T Consensus 647 wfvStGkDnlLnawrtPyGasiFqskE~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 647 WFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred eeeecCchhhhhhccCccccceeeccccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 999999999999999999999999888888877 6788999999999999999875
No 97
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.80 E-value=1.6e-18 Score=181.04 Aligned_cols=241 Identities=13% Similarity=0.181 Sum_probs=189.0
Q ss_pred ecCCCCCcEEEEEEe--CCEEEEEECCCcEEEEECCCCCe-eEEEEeccCCCCEEEEEEcC--CCCEEEEEeCCCeEEEE
Q 001455 789 ASHKCSGAVTALIYY--KGLLCSGFSDGSIKMWDIKKQSA-MLVWDVKEHRKAVTSFSLFE--PGESLLSGSADKTIGVW 863 (1074)
Q Consensus 789 ~~~gH~~~VtsLafS--~~~LaSGs~DGtVrIWDl~t~~~-~~i~tl~gH~~~VtsLafSp--dg~~LaSGS~DGtIrIW 863 (1074)
+...|.+.|..+... +..|||+++|++|+|+.++.... .++.++.||.++|+.++|.. .|..|+|++.||.|.||
T Consensus 6 idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiW 85 (299)
T KOG1332|consen 6 IDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIW 85 (299)
T ss_pred hhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEE
Confidence 344788888887766 88999999999999999987654 67899999999999999975 78999999999999999
Q ss_pred EccCCceEEE-EEeccCCCeEEE--ccCC--CeEEEEecCCeEEEEeCCCc-----ee-eeecCCCeEEEEEe----CC-
Q 001455 864 QMVQRKLELI-EVIATKEPIRKL--DTYG--KTIFASTQGHRMKVIDSSRT-----LK-DIYRSKGIKSMSVV----QG- 927 (1074)
Q Consensus 864 Dl~tg~~~~~-~~~~h~~~V~s~--s~dg--~~L~sgS~DgtI~VWDl~~~-----l~-~l~~~~~V~sLa~s----dg- 927 (1074)
.-.+|+.... ....|...|.++ .||+ -.|++++.||.|.|.+.+.. .+ ...+.-+|++++|. +|
T Consensus 86 ke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~ 165 (299)
T KOG1332|consen 86 KEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGS 165 (299)
T ss_pred ecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCcc
Confidence 9888864322 334678888875 4554 48899999999999987732 11 12234568888883 22
Q ss_pred -----------EEEEEECCCcEEEEEccCCceeeeccccccccCCCCCeEEEEEcCCc----eEEEEEecCCCeEEEEEC
Q 001455 928 -----------KIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDW----LYSASSSVEGSNIKEWRR 992 (1074)
Q Consensus 928 -----------kLlaGs~DgsI~IwDl~tg~~~~i~~~~r~~~~h~~~I~sL~~spd~----i~las~S~dDgtI~IWDl 992 (1074)
++++|+.|+.|++|+...+.-... +.+.+|...+..+++.|.- .++++++ +||++.||..
T Consensus 166 ~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e----~~l~~H~dwVRDVAwaP~~gl~~s~iAS~S-qDg~viIwt~ 240 (299)
T KOG1332|consen 166 LVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLE----RTLEGHKDWVRDVAWAPSVGLPKSTIASCS-QDGTVIIWTK 240 (299)
T ss_pred ccccCcccccceeeccCCccceeeeecCCcchhhh----hhhhhcchhhhhhhhccccCCCceeeEEec-CCCcEEEEEe
Confidence 488899999999999998743322 4578999999999999863 3556665 8999999986
Q ss_pred CCC--C-eEEEccCCCCCeEEEEEecCCCEEEEEECCCcEEEEEC
Q 001455 993 HRK--P-QISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLR 1034 (1074)
Q Consensus 993 ~t~--~-~i~~l~gH~~~VtsLafSPDG~~LaSGS~DGtIrIWDl 1034 (1074)
+.. + ....+......++.+.||+.|.+|+.++.|+.|.+|.-
T Consensus 241 ~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke 285 (299)
T KOG1332|consen 241 DEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKE 285 (299)
T ss_pred cCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEe
Confidence 521 1 12334445678999999999999999999999999973
No 98
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.79 E-value=1.9e-17 Score=178.36 Aligned_cols=253 Identities=13% Similarity=0.167 Sum_probs=193.3
Q ss_pred EEEEECCCcEEEEECCCCC----------eeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEccCCceEEEEEe
Q 001455 807 LCSGFSDGSIKMWDIKKQS----------AMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVI 876 (1074)
Q Consensus 807 LaSGs~DGtVrIWDl~t~~----------~~~i~tl~gH~~~VtsLafSpdg~~LaSGS~DGtIrIWDl~tg~~~~~~~~ 876 (1074)
|++|++...|.-+++.-.. ..++..+..|.++|++++. ++.+++|||.|-+|+|||+.+.. ......
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~-qlg~ll 80 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRK-QLGILL 80 (362)
T ss_pred EEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEe--cceeEeccCCCCcEEEEeccchh-hhccee
Confidence 6778888777777654221 1246677899999999998 78999999999999999998765 344556
Q ss_pred ccCCCeEEEc--cCCC--eEEEEecCCeEEEEeCC--Cceeeeec-CCCeEEEEEe-CCEEE-EEECCCcEEEEEccCCc
Q 001455 877 ATKEPIRKLD--TYGK--TIFASTQGHRMKVIDSS--RTLKDIYR-SKGIKSMSVV-QGKIY-IGCMDSSIQELAVSNNV 947 (1074)
Q Consensus 877 ~h~~~V~s~s--~dg~--~L~sgS~DgtI~VWDl~--~~l~~l~~-~~~V~sLa~s-dgkLl-aGs~DgsI~IwDl~tg~ 947 (1074)
.|.+.|+++. +.-. .+++|+.||.|.+|+.. .....+.. .+.|+.+++. .|+++ +.+.|+.++.||+-.|+
T Consensus 81 ~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr 160 (362)
T KOG0294|consen 81 SHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGR 160 (362)
T ss_pred ccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCc
Confidence 7888888754 3322 79999999999999988 45555554 3459999994 78855 58999999999999887
Q ss_pred eeeeccccccccCCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEccCCCCCeEEEEEecCCCEEEEEECCC
Q 001455 948 EREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSAS 1027 (1074)
Q Consensus 948 ~~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S~dDgtI~IWDl~t~~~i~~l~gH~~~VtsLafSPDG~~LaSGS~DG 1027 (1074)
...+... ...-+.+.|.|.|.+.+... -..|-+|.+.+......+... ..+.++.|. ++.++++|+.|+
T Consensus 161 ~a~v~~L-------~~~at~v~w~~~Gd~F~v~~--~~~i~i~q~d~A~v~~~i~~~-~r~l~~~~l-~~~~L~vG~d~~ 229 (362)
T KOG0294|consen 161 VAFVLNL-------KNKATLVSWSPQGDHFVVSG--RNKIDIYQLDNASVFREIENP-KRILCATFL-DGSELLVGGDNE 229 (362)
T ss_pred cceeecc-------CCcceeeEEcCCCCEEEEEe--ccEEEEEecccHhHhhhhhcc-ccceeeeec-CCceEEEecCCc
Confidence 6444211 33444588999888555554 246999998877655544322 345555554 677899999999
Q ss_pred cEEEEECCCCcEEEEEeCC-CCeEEEEE-c---CCEEEEEECCCcEEEEec
Q 001455 1028 SLQIWLRGTQQKVGRISAG-SKITSLLT-A---NDIVLCGTETGLIKGWIP 1073 (1074)
Q Consensus 1028 tIrIWDl~tg~~l~tL~~h-s~VtsLa~-d---g~~LaSGs~DG~IrIWdi 1073 (1074)
.|.+||.+++.+...+.+| .+|.++.+ . +.+|+++|+||.|+|||+
T Consensus 230 ~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~ 280 (362)
T KOG0294|consen 230 WISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDI 280 (362)
T ss_pred eEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEc
Confidence 9999999999999999999 55988774 3 459999999999999996
No 99
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.79 E-value=3e-17 Score=176.28 Aligned_cols=245 Identities=12% Similarity=0.209 Sum_probs=165.3
Q ss_pred CCCCCcEEEEEEe--CCEEEEEECCCcEEEEECCC--CCeeEEEEeccCCCCEEEEEEcC--CCCEEEEEeCCCeEEEEE
Q 001455 791 HKCSGAVTALIYY--KGLLCSGFSDGSIKMWDIKK--QSAMLVWDVKEHRKAVTSFSLFE--PGESLLSGSADKTIGVWQ 864 (1074)
Q Consensus 791 ~gH~~~VtsLafS--~~~LaSGs~DGtVrIWDl~t--~~~~~i~tl~gH~~~VtsLafSp--dg~~LaSGS~DGtIrIWD 864 (1074)
.+|.+-|.++.|. |..+|||+.|++|+|||.++ ++.......+.|.+.|..+.|.+ -|+.+++++.|+++.||.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence 4889999999999 88999999999999999654 34446677889999999999964 588899999999999997
Q ss_pred ccCCce--------EEEEEeccCCCeEEEccCCCeEEEEecCCeEEEEeCCCceeeeecCCCeEEEEEe---CC-EEEEE
Q 001455 865 MVQRKL--------ELIEVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSSRTLKDIYRSKGIKSMSVV---QG-KIYIG 932 (1074)
Q Consensus 865 l~tg~~--------~~~~~~~h~~~V~s~s~dg~~L~sgS~DgtI~VWDl~~~l~~l~~~~~V~sLa~s---dg-kLlaG 932 (1074)
=..... .+......... |.++.|. -| +++++
T Consensus 90 E~~~~~~~~~~~Wv~~ttl~Dsrss-------------------------------------V~DV~FaP~hlGLklA~~ 132 (361)
T KOG2445|consen 90 EQEKSEEAHGRRWVRRTTLVDSRSS-------------------------------------VTDVKFAPKHLGLKLAAA 132 (361)
T ss_pred ecccccccccceeEEEEEeecCCcc-------------------------------------eeEEEecchhcceEEEEe
Confidence 421111 11122223333 4444442 12 13344
Q ss_pred ECCCcEEEEEccCCceee-------eccccccccCCCCCeEEEEEcCC---ceEEEEEecCC----CeEEEEECCCCC--
Q 001455 933 CMDSSIQELAVSNNVERE-------IKAPFKSWRLQSKPINSLVVYKD---WLYSASSSVEG----SNIKEWRRHRKP-- 996 (1074)
Q Consensus 933 s~DgsI~IwDl~tg~~~~-------i~~~~r~~~~h~~~I~sL~~spd---~i~las~S~dD----gtI~IWDl~t~~-- 996 (1074)
+.||.+|||+.-.-.... +.........+..+..|+.+++. ..+++.++.++ +.++||....+.
T Consensus 133 ~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rK 212 (361)
T KOG2445|consen 133 SADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRK 212 (361)
T ss_pred ccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcce
Confidence 455555555443211100 00000111234556677777754 23444444221 478888854432
Q ss_pred --eEEEccCCCCCeEEEEEecC----CCEEEEEECCCcEEEEECCC--------------------CcEEEEEeCC-CCe
Q 001455 997 --QISIAPEKGTTIQAMAVVED----FIYLNYNSSASSLQIWLRGT--------------------QQKVGRISAG-SKI 1049 (1074)
Q Consensus 997 --~i~~l~gH~~~VtsLafSPD----G~~LaSGS~DGtIrIWDl~t--------------------g~~l~tL~~h-s~V 1049 (1074)
.+..+.+|+.+|++++|.|+ ...||+++.|| |+||++.. -+.+..+.+| ++|
T Consensus 213 w~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~V 291 (361)
T KOG2445|consen 213 WLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEV 291 (361)
T ss_pred eeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCce
Confidence 35567799999999999994 35799999999 99999763 1235566677 469
Q ss_pred EEEEEc--CCEEEEEECCCcEEEEec
Q 001455 1050 TSLLTA--NDIVLCGTETGLIKGWIP 1073 (1074)
Q Consensus 1050 tsLa~d--g~~LaSGs~DG~IrIWdi 1073 (1074)
+.+.|+ |.+|.|.|.||.||+|..
T Consensus 292 Wrv~wNmtGtiLsStGdDG~VRLWka 317 (361)
T KOG2445|consen 292 WRVRWNMTGTILSSTGDDGCVRLWKA 317 (361)
T ss_pred EEEEEeeeeeEEeecCCCceeeehhh
Confidence 999998 999999999999999974
No 100
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.79 E-value=7.1e-19 Score=188.57 Aligned_cols=234 Identities=16% Similarity=0.208 Sum_probs=194.5
Q ss_pred CCCCcEEEEEEe-C-CEEEEEECCCcEEEEECCCCCeeEEEEec-cCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEccCC
Q 001455 792 KCSGAVTALIYY-K-GLLCSGFSDGSIKMWDIKKQSAMLVWDVK-EHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQR 868 (1074)
Q Consensus 792 gH~~~VtsLafS-~-~~LaSGs~DGtVrIWDl~t~~~~~i~tl~-gH~~~VtsLafSpdg~~LaSGS~DGtIrIWDl~tg 868 (1074)
-|.++|.|+.|+ + ..+|+|+.||.|+||.+.++.+ ++.|. .|+.+|+|+.|+.|+..+++++.|.++|+.-+.+|
T Consensus 261 Mmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~C--lRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSG 338 (508)
T KOG0275|consen 261 MMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQC--LRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSG 338 (508)
T ss_pred ecccceEEEeecccHHHhhccCcCCcEEEEEEecchH--HHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccc
Confidence 468999999999 3 4899999999999999999977 56665 89999999999999999999999999999999999
Q ss_pred ceEEEEEeccCCCeE--EEccCCCeEEEEecCCeEEEEeCC--Cceeeeec---CCCeEEEEE-e--CCEEEEEECCCcE
Q 001455 869 KLELIEVIATKEPIR--KLDTYGKTIFASTQGHRMKVIDSS--RTLKDIYR---SKGIKSMSV-V--QGKIYIGCMDSSI 938 (1074)
Q Consensus 869 ~~~~~~~~~h~~~V~--s~s~dg~~L~sgS~DgtI~VWDl~--~~l~~l~~---~~~V~sLa~-s--dgkLlaGs~DgsI 938 (1074)
++. ..+.+|.+.|. .|.++|..+++++.||+|++|+.. .+..++.. .-.|.++.. | ..+++.+...++|
T Consensus 339 K~L-KEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv 417 (508)
T KOG0275|consen 339 KCL-KEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTV 417 (508)
T ss_pred hhH-HHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeE
Confidence 864 35678888886 488999999999999999999987 45555554 334666655 4 4458888888999
Q ss_pred EEEEccCCceeeeccccccccCCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEccCCCCCeEEEEEecCCC
Q 001455 939 QELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFI 1018 (1074)
Q Consensus 939 ~IwDl~tg~~~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S~dDgtI~IWDl~t~~~i~~l~gH~~~VtsLafSPDG~ 1018 (1074)
++.++...-....... ...++..-+...+|.|.++.+.+ +|+.++.|...+|...+++..|...|..++-+|..+
T Consensus 418 ~imn~qGQvVrsfsSG----kREgGdFi~~~lSpkGewiYcig-ED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqN 492 (508)
T KOG0275|consen 418 YIMNMQGQVVRSFSSG----KREGGDFINAILSPKGEWIYCIG-EDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQN 492 (508)
T ss_pred EEEeccceEEeeeccC----CccCCceEEEEecCCCcEEEEEc-cCcEEEEEEeecCceeeeeecccccccccccCcccc
Confidence 9999976333222111 22345555667889998888776 899999999999999999999999999999999999
Q ss_pred EEEEEECCCcEEEEE
Q 001455 1019 YLNYNSSASSLQIWL 1033 (1074)
Q Consensus 1019 ~LaSGS~DGtIrIWD 1033 (1074)
.+|+-++||.+++|.
T Consensus 493 llAsYsEDgllKLWk 507 (508)
T KOG0275|consen 493 LLASYSEDGLLKLWK 507 (508)
T ss_pred hhhhhcccchhhhcC
Confidence 999999999999995
No 101
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.78 E-value=8.1e-18 Score=195.65 Aligned_cols=227 Identities=18% Similarity=0.250 Sum_probs=186.4
Q ss_pred CCCCcEEE-EEEe---CCEEEEEECCCcEEEEECCCCCeeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEccC
Q 001455 792 KCSGAVTA-LIYY---KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQ 867 (1074)
Q Consensus 792 gH~~~Vts-LafS---~~~LaSGs~DGtVrIWDl~t~~~~~i~tl~gH~~~VtsLafSpdg~~LaSGS~DGtIrIWDl~t 867 (1074)
+|.+-|.+ ++|. ++.+++|+.|++|.+|...+.. ++.+++||.+.|.|++...++. ++|||.|.++++|....
T Consensus 55 ~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~--P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~ 131 (745)
T KOG0301|consen 55 GPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAE--PLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGE 131 (745)
T ss_pred cCcceeeccceeccccCcceEeecccceEEEEecCCCC--chhhhhccccceeeeecCCcCc-eEecccccceEEecchh
Confidence 67788877 7776 4579999999999999999874 4899999999999999877777 99999999999998654
Q ss_pred CceEEEEEeccCCCeEEEc-cCCCeEEEEecCCeEEEEeCCCceeeeecC-CCeEEEEEe-CCEEEEEECCCcEEEEEcc
Q 001455 868 RKLELIEVIATKEPIRKLD-TYGKTIFASTQGHRMKVIDSSRTLKDIYRS-KGIKSMSVV-QGKIYIGCMDSSIQELAVS 944 (1074)
Q Consensus 868 g~~~~~~~~~h~~~V~s~s-~dg~~L~sgS~DgtI~VWDl~~~l~~l~~~-~~V~sLa~s-dgkLlaGs~DgsI~IwDl~ 944 (1074)
-. ....+|..+|+++. ...+.+++|+.|.+|++|.-....+++.+| ..|+.+++- ++.+++++.||.|+.|++.
T Consensus 132 l~---~~l~gH~asVWAv~~l~e~~~vTgsaDKtIklWk~~~~l~tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~~ 208 (745)
T KOG0301|consen 132 LV---YSLQGHTASVWAVASLPENTYVTGSADKTIKLWKGGTLLKTFSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDLD 208 (745)
T ss_pred hh---cccCCcchheeeeeecCCCcEEeccCcceeeeccCCchhhhhccchhheeeeEEecCCCeEeecCCceEEEEecc
Confidence 22 23678999999853 334499999999999999998888888864 569999995 6689999999999999995
Q ss_pred CCceeeeccccccccCCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEccCCCCCeEEEEEecCCCEEEEEE
Q 001455 945 NNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNS 1024 (1074)
Q Consensus 945 tg~~~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S~dDgtI~IWDl~t~~~i~~l~gH~~~VtsLafSPDG~~LaSGS 1024 (1074)
.... ..+.+|...++++....+...+++++ +|++++||+.. .+.+.+...+..|+++.+-++|. |++|+
T Consensus 209 ge~l-------~~~~ghtn~vYsis~~~~~~~Ivs~g-EDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgD-Ivvg~ 277 (745)
T KOG0301|consen 209 GEVL-------LEMHGHTNFVYSISMALSDGLIVSTG-EDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGD-IVVGG 277 (745)
T ss_pred Ccee-------eeeeccceEEEEEEecCCCCeEEEec-CCceEEEeecC--ceEEEEecCccceEEEEEeeCCC-EEEec
Confidence 5333 23468899999999555555556555 89999999976 67777766677899999999998 56677
Q ss_pred CCCcEEEEECC
Q 001455 1025 SASSLQIWLRG 1035 (1074)
Q Consensus 1025 ~DGtIrIWDl~ 1035 (1074)
.||.||||...
T Consensus 278 SDG~VrVfT~~ 288 (745)
T KOG0301|consen 278 SDGRVRVFTVD 288 (745)
T ss_pred cCceEEEEEec
Confidence 79999999755
No 102
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=2e-17 Score=185.25 Aligned_cols=276 Identities=11% Similarity=0.160 Sum_probs=216.6
Q ss_pred CCCCCcEEEEEEeC--CEEEEEECCCcEEEEECCCCCeeEEEEeccCCCCEEEEEEcCCCC-EEEEEeCCCeEEEEEccC
Q 001455 791 HKCSGAVTALIYYK--GLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGE-SLLSGSADKTIGVWQMVQ 867 (1074)
Q Consensus 791 ~gH~~~VtsLafS~--~~LaSGs~DGtVrIWDl~t~~~~~i~tl~gH~~~VtsLafSpdg~-~LaSGS~DGtIrIWDl~t 867 (1074)
+.-.+.|++|.|++ ..+++||.||+++||.++......++.+.--..+|.+.+|.|+|. .++++|.-.....||+.+
T Consensus 210 ~ps~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ 289 (514)
T KOG2055|consen 210 HPSHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLET 289 (514)
T ss_pred CcCcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccc
Confidence 34468999999994 479999999999999998776666777766788999999999999 799999999999999998
Q ss_pred CceEEEEEe-ccCCC-eE--EEccCCCeEEEEecCCeEEEEeCC--CceeeeecCCCeEEEEEe-CCE-EEEEECCCcEE
Q 001455 868 RKLELIEVI-ATKEP-IR--KLDTYGKTIFASTQGHRMKVIDSS--RTLKDIYRSKGIKSMSVV-QGK-IYIGCMDSSIQ 939 (1074)
Q Consensus 868 g~~~~~~~~-~h~~~-V~--s~s~dg~~L~sgS~DgtI~VWDl~--~~l~~l~~~~~V~sLa~s-dgk-LlaGs~DgsI~ 939 (1074)
.+....... ++... +. .+++++++|+..+..|.|.+.... ..+..+.-.+.|..+.|+ +++ +++.+.+|.|+
T Consensus 290 ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~ 369 (514)
T KOG2055|consen 290 AKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVY 369 (514)
T ss_pred cccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEE
Confidence 876443322 33322 22 358999999999999999998765 233444457779999997 776 77888999999
Q ss_pred EEEccCCceeeeccccccccCC-CCCeEEEEEcCCceEEEEEecCCCeEEEEECCC------CCeEEEccCCCCCeEEEE
Q 001455 940 ELAVSNNVEREIKAPFKSWRLQ-SKPINSLVVYKDWLYSASSSVEGSNIKEWRRHR------KPQISIAPEKGTTIQAMA 1012 (1074)
Q Consensus 940 IwDl~tg~~~~i~~~~r~~~~h-~~~I~sL~~spd~i~las~S~dDgtI~IWDl~t------~~~i~~l~gH~~~VtsLa 1012 (1074)
+||++...... .|... .-.-++++.++++.|+++++ +.|.|.|||.++ .+++..+..-...|+++.
T Consensus 370 v~nl~~~~~~~------rf~D~G~v~gts~~~S~ng~ylA~GS-~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~ 442 (514)
T KOG2055|consen 370 VWNLRQNSCLH------RFVDDGSVHGTSLCISLNGSYLATGS-DSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQ 442 (514)
T ss_pred EEecCCcceEE------EEeecCccceeeeeecCCCceEEecc-CcceEEEeccchhhccCCCCchhhhhhhheeeeeee
Confidence 99999864432 33322 23446788889999999887 789999999643 334555555566899999
Q ss_pred EecCCCEEEEEE--CCCcEEEEECCCCcEEEEEeCC----CCeEEEEEc--CCEEEEEECCCcEEEEec
Q 001455 1013 VVEDFIYLNYNS--SASSLQIWLRGTQQKVGRISAG----SKITSLLTA--NDIVLCGTETGLIKGWIP 1073 (1074)
Q Consensus 1013 fSPDG~~LaSGS--~DGtIrIWDl~tg~~l~tL~~h----s~VtsLa~d--g~~LaSGs~DG~IrIWdi 1073 (1074)
|+||++.||.+| .+..+++-.+.+.+....+... +.|+|++|+ +.+++.|..+|+|.+|.+
T Consensus 443 Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL 511 (514)
T KOG2055|consen 443 FNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKL 511 (514)
T ss_pred eCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEee
Confidence 999999988777 5788999998887777766654 349999987 459999999999999975
No 103
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.78 E-value=2.2e-17 Score=174.37 Aligned_cols=231 Identities=13% Similarity=0.166 Sum_probs=191.6
Q ss_pred EeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEccCCceEEEEEeccCCCeEEE--ccCCCeEEEEecCCeEEEEeCC-
Q 001455 831 DVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATKEPIRKL--DTYGKTIFASTQGHRMKVIDSS- 907 (1074)
Q Consensus 831 tl~gH~~~VtsLafSpdg~~LaSGS~DGtIrIWDl~tg~~~~~~~~~h~~~V~s~--s~dg~~L~sgS~DgtI~VWDl~- 907 (1074)
.++||..+++-+.|+.+|..|+||+.|.+..+|-..+|+. .-...+|...|+++ +.+...+++|+.|.++++||+.
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGer-lGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~t 83 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGER-LGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVET 83 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCce-eeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCC
Confidence 4689999999999999999999999999999998878874 44667999999985 5778899999999999999998
Q ss_pred -CceeeeecCCCeEEEEEe-CCEEEEEE------CCCcEEEEEccCCc-eeeeccccccccCCCCCeEEEEEcCCceEEE
Q 001455 908 -RTLKDIYRSKGIKSMSVV-QGKIYIGC------MDSSIQELAVSNNV-EREIKAPFKSWRLQSKPINSLVVYKDWLYSA 978 (1074)
Q Consensus 908 -~~l~~l~~~~~V~sLa~s-dgkLlaGs------~DgsI~IwDl~tg~-~~~i~~~~r~~~~h~~~I~sL~~spd~i~la 978 (1074)
+.+..+..+..|+.+.|+ +|.++..+ ..+.|.++|++... ......|......+...++...|.|-+.+++
T Consensus 84 Gk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii 163 (327)
T KOG0643|consen 84 GKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETII 163 (327)
T ss_pred CcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEE
Confidence 456666678889999998 66654433 35679999998543 2222333444556678899999999999999
Q ss_pred EEecCCCeEEEEECCCCC-eEEEccCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCeEEEEEcC-
Q 001455 979 SSSVEGSNIKEWRRHRKP-QISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAGSKITSLLTAN- 1056 (1074)
Q Consensus 979 s~S~dDgtI~IWDl~t~~-~i~~l~gH~~~VtsLafSPDG~~LaSGS~DGtIrIWDl~tg~~l~tL~~hs~VtsLa~dg- 1056 (1074)
++. +||.|.+||..+|. .+.....|...|+.+.++||..++++||.|.+-++||..+.+.+.++....+|++.++.+
T Consensus 164 ~Gh-e~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aaisP~ 242 (327)
T KOG0643|consen 164 AGH-EDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAISPL 242 (327)
T ss_pred Eec-CCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeeecccccceecccc
Confidence 887 88999999999874 555667899999999999999999999999999999999999999999999999977653
Q ss_pred -CEEEEEE
Q 001455 1057 -DIVLCGT 1063 (1074)
Q Consensus 1057 -~~LaSGs 1063 (1074)
+.++.||
T Consensus 243 ~d~VilgG 250 (327)
T KOG0643|consen 243 LDHVILGG 250 (327)
T ss_pred cceEEecC
Confidence 4444443
No 104
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.78 E-value=8.7e-18 Score=179.96 Aligned_cols=214 Identities=13% Similarity=0.210 Sum_probs=176.4
Q ss_pred EEEeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEccC------------Cc-----eEEEEEeccCCCeEEE--ccCC
Q 001455 829 VWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQ------------RK-----LELIEVIATKEPIRKL--DTYG 889 (1074)
Q Consensus 829 i~tl~gH~~~VtsLafSpdg~~LaSGS~DGtIrIWDl~t------------g~-----~~~~~~~~h~~~V~s~--s~dg 889 (1074)
...+..|++++.+.+|+|||..++|||.|..|+|.|++. |. ........|.+.|..+ .|..
T Consensus 105 t~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre 184 (430)
T KOG0640|consen 105 TKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRE 184 (430)
T ss_pred eEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchh
Confidence 455678999999999999999999999999999999861 11 1233455677788764 5666
Q ss_pred CeEEEEecCCeEEEEeCCC-----ceeeeecCCCeEEEEEe-CCE-EEEEECCCcEEEEEccCCceeeeccccccccCCC
Q 001455 890 KTIFASTQGHRMKVIDSSR-----TLKDIYRSKGIKSMSVV-QGK-IYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQS 962 (1074)
Q Consensus 890 ~~L~sgS~DgtI~VWDl~~-----~l~~l~~~~~V~sLa~s-dgk-LlaGs~DgsI~IwDl~tg~~~~i~~~~r~~~~h~ 962 (1074)
..+++++.|++|++||..+ ..+.+.....|++++|. .|. +++|.....+++||+.+-+.-....| -..|.
T Consensus 185 ~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanP---d~qht 261 (430)
T KOG0640|consen 185 TILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANP---DDQHT 261 (430)
T ss_pred heEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCc---ccccc
Confidence 7999999999999999883 44556667889999995 666 66688888999999999665433222 25678
Q ss_pred CCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEcc-CCCC-CeEEEEEecCCCEEEEEECCCcEEEEECCCCcEE
Q 001455 963 KPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAP-EKGT-TIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKV 1040 (1074)
Q Consensus 963 ~~I~sL~~spd~i~las~S~dDgtI~IWDl~t~~~i~~l~-gH~~-~VtsLafSPDG~~LaSGS~DGtIrIWDl~tg~~l 1040 (1074)
..|+++.+++.+..-++++ .||.|++||--+++++.++. .|++ .|.+..|+.+|+|+++.|.|..|++|.+.++.++
T Consensus 262 ~ai~~V~Ys~t~~lYvTaS-kDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l 340 (430)
T KOG0640|consen 262 GAITQVRYSSTGSLYVTAS-KDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRML 340 (430)
T ss_pred cceeEEEecCCccEEEEec-cCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceE
Confidence 9999999999998888877 88999999988888887764 4544 7999999999999999999999999999999999
Q ss_pred EEEeCC
Q 001455 1041 GRISAG 1046 (1074)
Q Consensus 1041 ~tL~~h 1046 (1074)
.++.|.
T Consensus 341 ~~YtGA 346 (430)
T KOG0640|consen 341 KEYTGA 346 (430)
T ss_pred EEEecC
Confidence 998865
No 105
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.78 E-value=1.9e-17 Score=184.09 Aligned_cols=230 Identities=12% Similarity=0.159 Sum_probs=190.7
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCeEEEEEccCCceEEEEEeccCCCeEEE--ccCCCeEEEEecCCeEEEEeCCC---cee
Q 001455 837 KAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATKEPIRKL--DTYGKTIFASTQGHRMKVIDSSR---TLK 911 (1074)
Q Consensus 837 ~~VtsLafSpdg~~LaSGS~DGtIrIWDl~tg~~~~~~~~~h~~~V~s~--s~dg~~L~sgS~DgtI~VWDl~~---~l~ 911 (1074)
..++++...|....++||+.|+++.++|...++. ...+.+|...|..+ .++...+++++.|..|+||.... ...
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~-l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~ 298 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQI-LATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTS 298 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhhh-hhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccc
Confidence 4678888888878899999999999999988774 44667888888864 56777899999999999999762 222
Q ss_pred eeecCCCeEEEEEe--CCEEEEEECCCcEEEEEccCCceeeeccccccccCCCCCeEEEEEcCCceEEEEEecCCCeEEE
Q 001455 912 DIYRSKGIKSMSVV--QGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKE 989 (1074)
Q Consensus 912 ~l~~~~~V~sLa~s--dgkLlaGs~DgsI~IwDl~tg~~~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S~dDgtI~I 989 (1074)
...+...|+.+... ...+++++.||+..+.|+++|........ ....-.+++.+|||||..++++. .|+.++|
T Consensus 299 ~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~----~~s~v~~ts~~fHpDgLifgtgt-~d~~vki 373 (506)
T KOG0289|consen 299 SRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSD----ETSDVEYTSAAFHPDGLIFGTGT-PDGVVKI 373 (506)
T ss_pred cccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEee----ccccceeEEeeEcCCceEEeccC-CCceEEE
Confidence 23345678888874 44588899999999999999887554211 12345689999999999998887 7789999
Q ss_pred EECCCCCeEEEccCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCcEEEEEeCCC--CeEEEEEc--CCEEEEEECC
Q 001455 990 WRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAGS--KITSLLTA--NDIVLCGTET 1065 (1074)
Q Consensus 990 WDl~t~~~i~~l~gH~~~VtsLafSPDG~~LaSGS~DGtIrIWDl~tg~~l~tL~~hs--~VtsLa~d--g~~LaSGs~D 1065 (1074)
||+.++..+..|.+|.++|.++.|+.+|.|++++++|+.|++||++..+...++.... .|.++.|| |.+|+.+|.|
T Consensus 374 wdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~ 453 (506)
T KOG0289|consen 374 WDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSD 453 (506)
T ss_pred EEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecce
Confidence 9999999999999999999999999999999999999999999999999888888664 49998887 8899999888
Q ss_pred CcEEEEe
Q 001455 1066 GLIKGWI 1072 (1074)
Q Consensus 1066 G~IrIWd 1072 (1074)
=+|++++
T Consensus 454 l~Vy~~~ 460 (506)
T KOG0289|consen 454 LQVYICK 460 (506)
T ss_pred eEEEEEe
Confidence 7777654
No 106
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.77 E-value=4.4e-17 Score=186.63 Aligned_cols=270 Identities=12% Similarity=0.122 Sum_probs=197.0
Q ss_pred CCCCcEEEEEEe--CCEEEEEECCCcEEEEECCCCCeeEEEEeccCCCCEEEEEEcCCCCE-EEEEeCCCeEEEEEccCC
Q 001455 792 KCSGAVTALIYY--KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGES-LLSGSADKTIGVWQMVQR 868 (1074)
Q Consensus 792 gH~~~VtsLafS--~~~LaSGs~DGtVrIWDl~t~~~~~i~tl~gH~~~VtsLafSpdg~~-LaSGS~DGtIrIWDl~tg 868 (1074)
||++.|.+|... +.+|++|+.||+|+||.+.++.+ +.++. -.+.|.|++|+|.+.. ++.+..+..+.|-+..-|
T Consensus 398 GHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRc--vr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G 474 (733)
T KOG0650|consen 398 GHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRC--VRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIFG 474 (733)
T ss_pred ccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceE--EEEEe-ecceeEEEEecCCCCceeEEEEecCceEEeCcccc
Confidence 899999999998 67999999999999999999977 44442 2457999999998876 333333333444443222
Q ss_pred c------------------------------------eEEEEEeccCCCeEEEcc--CCCeEEEEecC---CeEEEEeCC
Q 001455 869 K------------------------------------LELIEVIATKEPIRKLDT--YGKTIFASTQG---HRMKVIDSS 907 (1074)
Q Consensus 869 ~------------------------------------~~~~~~~~h~~~V~s~s~--dg~~L~sgS~D---gtI~VWDl~ 907 (1074)
. .-......|...|..+++ .|++|+++..+ ..|.|+++.
T Consensus 475 ~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLS 554 (733)
T KOG0650|consen 475 DRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLS 554 (733)
T ss_pred chhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEecc
Confidence 0 001234456666766554 56799988654 478999988
Q ss_pred Cceee--ee-cCCCeEEEEEe-CCEEEEEECCCcEEEEEccCCceeeeccccccccCCCCCeEEEEEcCCceEEEEEecC
Q 001455 908 RTLKD--IY-RSKGIKSMSVV-QGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVE 983 (1074)
Q Consensus 908 ~~l~~--l~-~~~~V~sLa~s-dgkLlaGs~DgsI~IwDl~tg~~~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S~d 983 (1074)
+.... +. ..+.|.++.|. ....+..+....|++||+...... +.+......|.+++.||.|-.++.++ -
T Consensus 555 K~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelv------KkL~tg~kwiS~msihp~GDnli~gs-~ 627 (733)
T KOG0650|consen 555 KRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELV------KKLLTGSKWISSMSIHPNGDNLILGS-Y 627 (733)
T ss_pred cccccCchhhcCCceeEEEecCCCceEEEEeccceEEEehhHHHHH------HHHhcCCeeeeeeeecCCCCeEEEec-C
Confidence 43222 22 25568899996 333444455678999999874332 22334467899999999888888776 6
Q ss_pred CCeEEEEECCCC-CeEEEccCCCCCeEEEEEecCCCEEEEEECCCcEEEEEC--CC-------CcEEEEEeCCCC-----
Q 001455 984 GSNIKEWRRHRK-PQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLR--GT-------QQKVGRISAGSK----- 1048 (1074)
Q Consensus 984 DgtI~IWDl~t~-~~i~~l~gH~~~VtsLafSPDG~~LaSGS~DGtIrIWDl--~t-------g~~l~tL~~hs~----- 1048 (1074)
|+.+..||++-. +..+++..|...|++++|++.-.++++|+.||++.|+.- .+ --++..+.+|..
T Consensus 628 d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~g 707 (733)
T KOG0650|consen 628 DKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLG 707 (733)
T ss_pred CCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccc
Confidence 788999997644 467788889999999999999999999999999999851 11 123678888833
Q ss_pred eEEEEEcCC--EEEEEECCCcEEEE
Q 001455 1049 ITSLLTAND--IVLCGTETGLIKGW 1071 (1074)
Q Consensus 1049 VtsLa~dg~--~LaSGs~DG~IrIW 1071 (1074)
|....|+++ +|+++|.||+|++|
T Consensus 708 VLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 708 VLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred eEeecccCCCceEEecCCCceEEee
Confidence 666778876 99999999999999
No 107
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.77 E-value=2.4e-17 Score=184.79 Aligned_cols=228 Identities=16% Similarity=0.167 Sum_probs=181.0
Q ss_pred CCCCcEEEEEEe--CCEEEEEECCCcEEEEECCCCCeeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEccCCc
Q 001455 792 KCSGAVTALIYY--KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRK 869 (1074)
Q Consensus 792 gH~~~VtsLafS--~~~LaSGs~DGtVrIWDl~t~~~~~i~tl~gH~~~VtsLafSpdg~~LaSGS~DGtIrIWDl~tg~ 869 (1074)
+|.+.|.+++.+ +.|||+|+.|..|.||+.++.+ ++..+++|.+.|.+++|-.....+++++.|++|++|+++...
T Consensus 200 ~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~e--hv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s 277 (479)
T KOG0299|consen 200 GHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLE--HVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLS 277 (479)
T ss_pred cccceeEEEEEcCCCcEEEecCCCceEEEecCcccc--hhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhH
Confidence 799999999999 5589999999999999999885 478899999999999998888889999999999999997654
Q ss_pred eEEEEEeccCCCeEEEcc--CCCeEEEEecCCeEEEEeCCCceeeeec--CCCeEEEEEe-CCEEEEEECCCcEEEEEcc
Q 001455 870 LELIEVIATKEPIRKLDT--YGKTIFASTQGHRMKVIDSSRTLKDIYR--SKGIKSMSVV-QGKIYIGCMDSSIQELAVS 944 (1074)
Q Consensus 870 ~~~~~~~~h~~~V~s~s~--dg~~L~sgS~DgtI~VWDl~~~l~~l~~--~~~V~sLa~s-dgkLlaGs~DgsI~IwDl~ 944 (1074)
. .....+|.+.|..++. -.+.+.+|+.|+++++|++....+.++. ...+.|++|- +.++++|+.+|.|.+|++.
T Consensus 278 ~-vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In~~HfvsGSdnG~IaLWs~~ 356 (479)
T KOG0299|consen 278 Y-VETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFINDEHFVSGSDNGSIALWSLL 356 (479)
T ss_pred H-HHHHhCCccceeeechhcccceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEecccceeeccCCceEEEeeec
Confidence 3 3356789999998864 3445666669999999999865555543 3469999996 7789999999999999998
Q ss_pred CCceeeecccccc-cc-----CCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCC----eEEEccCCCCCeEEEEEe
Q 001455 945 NNVEREIKAPFKS-WR-----LQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKP----QISIAPEKGTTIQAMAVV 1014 (1074)
Q Consensus 945 tg~~~~i~~~~r~-~~-----~h~~~I~sL~~spd~i~las~S~dDgtI~IWDl~t~~----~i~~l~gH~~~VtsLafS 1014 (1074)
..+........+. .. .+...|++++..|....+++++ .+|.|++|-+..+- ++..+. -.+.|++++|+
T Consensus 357 KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS-~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f~ 434 (479)
T KOG0299|consen 357 KKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGS-WSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAFS 434 (479)
T ss_pred ccCceeEeeccccccCCccccccccceeeeEecccCceEEecC-CCCceEEEEecCCccccceeeecc-cccEEEEEEEc
Confidence 8665443211111 11 1124899999999988888877 67899999988772 333332 56789999999
Q ss_pred cCCCEEEEEE
Q 001455 1015 EDFIYLNYNS 1024 (1074)
Q Consensus 1015 PDG~~LaSGS 1024 (1074)
++|++|++|-
T Consensus 435 ~sgk~ivagi 444 (479)
T KOG0299|consen 435 NSGKRIVAGI 444 (479)
T ss_pred cCCCEEEEec
Confidence 9999777664
No 108
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.76 E-value=7.8e-16 Score=169.49 Aligned_cols=256 Identities=11% Similarity=0.106 Sum_probs=178.0
Q ss_pred cEEEEEEe-C-CEE-EEEECCCcEEEEECCCCCeeEEEEeccCCCCEEEEEEcCCCCEEEE-EeCCCeEEEEEccCCceE
Q 001455 796 AVTALIYY-K-GLL-CSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLS-GSADKTIGVWQMVQRKLE 871 (1074)
Q Consensus 796 ~VtsLafS-~-~~L-aSGs~DGtVrIWDl~t~~~~~i~tl~gH~~~VtsLafSpdg~~LaS-GS~DGtIrIWDl~tg~~~ 871 (1074)
.+.+++|+ + +.+ ++++.|+.|++||..+++. ...+..+.. +..++|+|+++.+++ ++.|+.+++||+.+++..
T Consensus 32 ~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~--~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~ 108 (300)
T TIGR03866 32 RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEV--IGTLPSGPD-PELFALHPNGKILYIANEDDNLVTVIDIETRKVL 108 (300)
T ss_pred CCCceEECCCCCEEEEEECCCCeEEEEECCCCcE--EEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEE
Confidence 36779998 3 454 6778899999999998754 445554443 567899999998754 566899999999887654
Q ss_pred EEEEeccCCCeEEEccCCCeEEEEecCC-eEEEEeCCCce--eeeecCCCeEEEEEe-CCE-EEEE-ECCCcEEEEEccC
Q 001455 872 LIEVIATKEPIRKLDTYGKTIFASTQGH-RMKVIDSSRTL--KDIYRSKGIKSMSVV-QGK-IYIG-CMDSSIQELAVSN 945 (1074)
Q Consensus 872 ~~~~~~h~~~V~s~s~dg~~L~sgS~Dg-tI~VWDl~~~l--~~l~~~~~V~sLa~s-dgk-LlaG-s~DgsI~IwDl~t 945 (1074)
.....+....-..+++++..+++++.++ .+.+||..... ........+.+++|+ +++ ++++ ..++.|++||+.+
T Consensus 109 ~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~ 188 (300)
T TIGR03866 109 AEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVAT 188 (300)
T ss_pred eEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCc
Confidence 3322222222345789999999888765 56778986322 222334456778886 666 5444 4689999999998
Q ss_pred Cceeeeccc-cccccCCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEccCCCCCeEEEEEecCCCEEEEEE
Q 001455 946 NVEREIKAP-FKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNS 1024 (1074)
Q Consensus 946 g~~~~i~~~-~r~~~~h~~~I~sL~~spd~i~las~S~dDgtI~IWDl~t~~~i~~l~gH~~~VtsLafSPDG~~LaSGS 1024 (1074)
++....... .............+.++|++.+++.....++.+.+||..+++..... .+...+.+++|+|+|++|++++
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~ 267 (300)
T TIGR03866 189 RKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYL-LVGQRVWQLAFTPDEKYLLTTN 267 (300)
T ss_pred ceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEE-EeCCCcceEEECCCCCEEEEEc
Confidence 764322110 00000111233468889998875544334668999999988876654 3445789999999999998864
Q ss_pred -CCCcEEEEECCCCcEEEEEeCCCCeEEEEEc
Q 001455 1025 -SASSLQIWLRGTQQKVGRISAGSKITSLLTA 1055 (1074)
Q Consensus 1025 -~DGtIrIWDl~tg~~l~tL~~hs~VtsLa~d 1055 (1074)
.+|.|.+||..+++.+.++..+...+++++.
T Consensus 268 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~ 299 (300)
T TIGR03866 268 GVSNDVSVIDVAALKVIKSIKVGRLPWGVVVR 299 (300)
T ss_pred CCCCeEEEEECCCCcEEEEEEcccccceeEeC
Confidence 6899999999999999999877667777654
No 109
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=5.9e-16 Score=180.19 Aligned_cols=272 Identities=14% Similarity=0.194 Sum_probs=209.7
Q ss_pred CCcEEEEEEe--CCEEEEEECCCcEEEEECCCCCeeEEEEeccCC-CCEEEEEEcCCCCEEEEEeCCCeEEEEEccCCce
Q 001455 794 SGAVTALIYY--KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHR-KAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKL 870 (1074)
Q Consensus 794 ~~~VtsLafS--~~~LaSGs~DGtVrIWDl~t~~~~~i~tl~gH~-~~VtsLafSpdg~~LaSGS~DGtIrIWDl~tg~~ 870 (1074)
..+|++++|+ .+.||.|-.||+|.||++...- -....+.++. +.|.+++|++ +..|+|.+.+|.|.-||+.+++.
T Consensus 25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w-~~~~vi~g~~drsIE~L~W~e-~~RLFS~g~sg~i~EwDl~~lk~ 102 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNW-FLEPVIHGPEDRSIESLAWAE-GGRLFSSGLSGSITEWDLHTLKQ 102 (691)
T ss_pred ccceEEEEEeccCCceeeeccCCcEEEEccCCCc-eeeEEEecCCCCceeeEEEcc-CCeEEeecCCceEEEEecccCce
Confidence 5799999999 6689999999999999998753 3445555554 6899999994 55688999999999999999875
Q ss_pred EEEEEeccCCCeEEE--ccCCCeEEEEecCCeEEEEeCCCceeeee----c-CCCeEEEEEe-CCE-EEEEECCCcEEEE
Q 001455 871 ELIEVIATKEPIRKL--DTYGKTIFASTQGHRMKVIDSSRTLKDIY----R-SKGIKSMSVV-QGK-IYIGCMDSSIQEL 941 (1074)
Q Consensus 871 ~~~~~~~h~~~V~s~--s~dg~~L~sgS~DgtI~VWDl~~~l~~l~----~-~~~V~sLa~s-dgk-LlaGs~DgsI~Iw 941 (1074)
.. .......+|+++ .+.+..++.|+.||.+..++......++. . ...|.+++|. ++. +++|+.||.|++|
T Consensus 103 ~~-~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriw 181 (691)
T KOG2048|consen 103 KY-NIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIW 181 (691)
T ss_pred eE-EecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEE
Confidence 43 445566778764 57788999999999777777764333322 2 4679999996 555 9999999999999
Q ss_pred EccCCceeeec-cccccc-cCCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEccCCCCCeEEEEEecCCCE
Q 001455 942 AVSNNVEREIK-APFKSW-RLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIY 1019 (1074)
Q Consensus 942 Dl~tg~~~~i~-~~~r~~-~~h~~~I~sL~~spd~i~las~S~dDgtI~IWDl~t~~~i~~l~gH~~~VtsLafSPDG~~ 1019 (1074)
|+..+....+. ...... ......|.++.+-.++..+.+- .-|+|++||...+.+++.+..|.+.|.+++..+++.+
T Consensus 182 d~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgD--S~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~ 259 (691)
T KOG2048|consen 182 DVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASGD--SAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDR 259 (691)
T ss_pred EcCCCceEEEeeecccccccCCceEEEEEEEeecCcEEEec--CCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCe
Confidence 99987764421 001111 1234567778877777655433 3589999999999999999999999999999999999
Q ss_pred EEEEECCCcEEEEECCCCcE--E--EEEeCC-CCeEEEEEcCCEEEEEECCCcEEE
Q 001455 1020 LNYNSSASSLQIWLRGTQQK--V--GRISAG-SKITSLLTANDIVLCGTETGLIKG 1070 (1074)
Q Consensus 1020 LaSGS~DGtIrIWDl~tg~~--l--~tL~~h-s~VtsLa~dg~~LaSGs~DG~IrI 1070 (1074)
++++|.|+.|.-|...++.. + .....| +.|.+++.-+..+++||.|+++.+
T Consensus 260 vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~~l~sgG~d~~l~i 315 (691)
T KOG2048|consen 260 VFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIENALISGGRDFTLAI 315 (691)
T ss_pred EEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecceEEecceeeEEEE
Confidence 99999999999998666543 2 222344 349999988889999999998876
No 110
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.75 E-value=1e-16 Score=172.72 Aligned_cols=228 Identities=13% Similarity=0.204 Sum_probs=180.4
Q ss_pred CCCCcEEEEEEe-CCEEEEEECCCcEEEEECCCCCeeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEccCCce
Q 001455 792 KCSGAVTALIYY-KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKL 870 (1074)
Q Consensus 792 gH~~~VtsLafS-~~~LaSGs~DGtVrIWDl~t~~~~~i~tl~gH~~~VtsLafSpdg~~LaSGS~DGtIrIWDl~tg~~ 870 (1074)
.|..++.+++|. +..+++|+.||.|+.+|+.++.. ..+..|..+|.|+.+++....+++||.|++|++||.+...
T Consensus 52 ~~~~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~~~---~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~- 127 (323)
T KOG1036|consen 52 KHGAPLLDCAFADESTIVTGGLDGQVRRYDLNTGNE---DQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKV- 127 (323)
T ss_pred ecCCceeeeeccCCceEEEeccCceEEEEEecCCcc---eeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccc-
Confidence 589999999999 56899999999999999999864 5567899999999999988889999999999999998632
Q ss_pred EEEEEeccCCCeEEEccCCCeEEEEecCCeEEEEeCCCceeeeec-----CCCeEEEEE-eCCE-EEEEECCCcEEEEEc
Q 001455 871 ELIEVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSSRTLKDIYR-----SKGIKSMSV-VQGK-IYIGCMDSSIQELAV 943 (1074)
Q Consensus 871 ~~~~~~~h~~~V~s~s~dg~~L~sgS~DgtI~VWDl~~~l~~l~~-----~~~V~sLa~-sdgk-LlaGs~DgsI~IwDl 943 (1074)
..........|.+++..++.|++|+.|..|.+||++.....++. .-.++|++. |++. +++++-||.|.+=.+
T Consensus 128 -~~~~~d~~kkVy~~~v~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~ 206 (323)
T KOG1036|consen 128 -VVGTFDQGKKVYCMDVSGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYF 206 (323)
T ss_pred -cccccccCceEEEEeccCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEcc
Confidence 22333445589999999999999999999999999854433322 234888887 4444 788999999988666
Q ss_pred cCCc----eeeeccccccccCC---CCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEccCCCCCeEEEEEecC
Q 001455 944 SNNV----EREIKAPFKSWRLQ---SKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVED 1016 (1074)
Q Consensus 944 ~tg~----~~~i~~~~r~~~~h---~~~I~sL~~spd~i~las~S~dDgtI~IWDl~t~~~i~~l~gH~~~VtsLafSPD 1016 (1074)
.... ....+...+.-... .-||++++|||-...+++++ .||.|.+||..+.+.+..+......|.+++|+.|
T Consensus 207 d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgG-sDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~d 285 (323)
T KOG1036|consen 207 DDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGG-SDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMD 285 (323)
T ss_pred CCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecC-CCceEEEccCcchhhhhhccCCCCceEEEEeccC
Confidence 5541 12222222211111 35899999999988888877 7899999999998888888777778999999999
Q ss_pred CCEEEEEEC
Q 001455 1017 FIYLNYNSS 1025 (1074)
Q Consensus 1017 G~~LaSGS~ 1025 (1074)
|..||.++.
T Consensus 286 G~~LAia~s 294 (323)
T KOG1036|consen 286 GSLLAIASS 294 (323)
T ss_pred CCeEEEEec
Confidence 999999873
No 111
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=2e-17 Score=185.75 Aligned_cols=226 Identities=19% Similarity=0.294 Sum_probs=172.3
Q ss_pred CCcEEEEEEe--CCEEEEEECCCcEEEEECCCCCeeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEccC----
Q 001455 794 SGAVTALIYY--KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQ---- 867 (1074)
Q Consensus 794 ~~~VtsLafS--~~~LaSGs~DGtVrIWDl~t~~~~~i~tl~gH~~~VtsLafSpdg~~LaSGS~DGtIrIWDl~t---- 867 (1074)
.++|.|++-+ |.+++.|+..|.+++|.+.+|.. +..+.+|-.+|+|+.|+.||.+|+|||.||.|.+|++.+
T Consensus 81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~L--L~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a 158 (476)
T KOG0646|consen 81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGIL--LNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSA 158 (476)
T ss_pred ccceeeeecCCCceEEEeecccCcEEEEEeccccH--HHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeeccc
Confidence 5789999998 44677777999999999999954 677889999999999999999999999999999998642
Q ss_pred ---Cce-EEEEEeccCCCeEEEc----cCCCeEEEEecCCeEEEEeCCC--ceeeeecCCCeEEEEEe--CCEEEEEECC
Q 001455 868 ---RKL-ELIEVIATKEPIRKLD----TYGKTIFASTQGHRMKVIDSSR--TLKDIYRSKGIKSMSVV--QGKIYIGCMD 935 (1074)
Q Consensus 868 ---g~~-~~~~~~~h~~~V~s~s----~dg~~L~sgS~DgtI~VWDl~~--~l~~l~~~~~V~sLa~s--dgkLlaGs~D 935 (1074)
+.. ....+..|.-+|+.+. +...++++++.|.++++||+.. .+.++.....+.+++++ +..+++|+.+
T Consensus 159 ~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt~~ 238 (476)
T KOG0646|consen 159 DNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGTEE 238 (476)
T ss_pred ccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCcceeEEEcccccEEEecCCc
Confidence 111 2234456777787653 2345899999999999999873 34455567778888885 5568889999
Q ss_pred CcEEEEEccCCceeeeccccccccCCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEccCCCC--CeEEEEE
Q 001455 936 SSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGT--TIQAMAV 1013 (1074)
Q Consensus 936 gsI~IwDl~tg~~~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S~dDgtI~IWDl~t~~~i~~l~gH~~--~VtsLaf 1013 (1074)
|.|.+.++.+-. +....+. .+.++. .+..+..+.||.+ .|+++++
T Consensus 239 G~I~~~~~~~~~------------~~~~~v~--------------------~k~~~~-~~t~~~~~~Gh~~~~~ITcLai 285 (476)
T KOG0646|consen 239 GKIFQNLLFKLS------------GQSAGVN--------------------QKGRHE-ENTQINVLVGHENESAITCLAI 285 (476)
T ss_pred ceEEeeehhcCC------------ccccccc--------------------cccccc-ccceeeeeccccCCcceeEEEE
Confidence 999888876511 1111111 111111 1233556778877 9999999
Q ss_pred ecCCCEEEEEECCCcEEEEECCCCcEEEEEe-CCCCeEEEEE
Q 001455 1014 VEDFIYLNYNSSASSLQIWLRGTQQKVGRIS-AGSKITSLLT 1054 (1074)
Q Consensus 1014 SPDG~~LaSGS~DGtIrIWDl~tg~~l~tL~-~hs~VtsLa~ 1054 (1074)
+-||..|++|+.||.|.|||..+.++++++. ..++|+.+.+
T Consensus 286 s~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i 327 (476)
T KOG0646|consen 286 STDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQI 327 (476)
T ss_pred ecCccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEe
Confidence 9999999999999999999999999999988 5577887766
No 112
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=1.7e-16 Score=170.76 Aligned_cols=288 Identities=11% Similarity=0.105 Sum_probs=199.5
Q ss_pred eeeEEEEeecCCCCCcEEEEEEe--CCEEEEEECCCcEEEEECCCCCeeEEEEe--ccCCCCEEEEEEcCCCCE-EEEEe
Q 001455 781 CVHTQILEASHKCSGAVTALIYY--KGLLCSGFSDGSIKMWDIKKQSAMLVWDV--KEHRKAVTSFSLFEPGES-LLSGS 855 (1074)
Q Consensus 781 ~~~tl~le~~~gH~~~VtsLafS--~~~LaSGs~DGtVrIWDl~t~~~~~i~tl--~gH~~~VtsLafSpdg~~-LaSGS 855 (1074)
..|.+.+....||.+.|++++|+ |.+|+|++.|++|++|+++.-....-+.+ .-.-+--+.+.|.||-+. ++++-
T Consensus 73 f~Hpl~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~ 152 (420)
T KOG2096|consen 73 FVHPLNVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVK 152 (420)
T ss_pred cccchhhhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEc
Confidence 45555555566999999999999 55899999999999999986322100000 111134678899999887 55666
Q ss_pred CCCeEEEEEccC---CceEEE--------EEeccCCCeEE--EccCCCeEEEEecCCeEEEEeCCCce-eeeecCC-CeE
Q 001455 856 ADKTIGVWQMVQ---RKLELI--------EVIATKEPIRK--LDTYGKTIFASTQGHRMKVIDSSRTL-KDIYRSK-GIK 920 (1074)
Q Consensus 856 ~DGtIrIWDl~t---g~~~~~--------~~~~h~~~V~s--~s~dg~~L~sgS~DgtI~VWDl~~~l-~~l~~~~-~V~ 920 (1074)
...++++|.+.. |..... ....|...+.. +...+.+|++++.|..|.+|++.+.. ..+..+. .-.
T Consensus 153 ~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lkGq~L~~idtnq~~n~ 232 (420)
T KOG2096|consen 153 RGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLKGQLLQSIDTNQSSNY 232 (420)
T ss_pred cCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecCCceeeeecccccccc
Confidence 677899997643 221111 11234445544 45677899999999999999998543 3333322 223
Q ss_pred EEEE-eCCEEEE-EECCCcEEEEEccCCceeeeccccc--cccCCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCC--
Q 001455 921 SMSV-VQGKIYI-GCMDSSIQELAVSNNVEREIKAPFK--SWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHR-- 994 (1074)
Q Consensus 921 sLa~-sdgkLla-Gs~DgsI~IwDl~tg~~~~i~~~~r--~~~~h~~~I~sL~~spd~i~las~S~dDgtI~IWDl~t-- 994 (1074)
..++ |+|++++ ++-.--|.+|.+--++...++...+ .+.+|...|..++|+++...+++.+ .||++++||.+-
T Consensus 233 ~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvS-kDG~wriwdtdVrY 311 (420)
T KOG2096|consen 233 DAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVS-KDGKWRIWDTDVRY 311 (420)
T ss_pred ceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEe-cCCcEEEeeccceE
Confidence 3344 4999665 6667789999986655544443333 3468899999999999999999888 889999999742
Q ss_pred --CC---eEEEc----cCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCcEEEEEeC-C-CCeEEEEEc--CCEEEE
Q 001455 995 --KP---QISIA----PEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISA-G-SKITSLLTA--NDIVLC 1061 (1074)
Q Consensus 995 --~~---~i~~l----~gH~~~VtsLafSPDG~~LaSGS~DGtIrIWDl~tg~~l~tL~~-h-s~VtsLa~d--g~~LaS 1061 (1074)
++ .++.. ...++....+..+|+|+.||.+. ...++++..++|+...+++. | +.|.+++|+ |+++++
T Consensus 312 ~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~at 390 (420)
T KOG2096|consen 312 EAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIAT 390 (420)
T ss_pred ecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEee
Confidence 11 12211 11233444899999999988765 56799999999998888764 4 349999986 779998
Q ss_pred EECCCcEEEE
Q 001455 1062 GTETGLIKGW 1071 (1074)
Q Consensus 1062 Gs~DG~IrIW 1071 (1074)
+| |..+++.
T Consensus 391 cG-dr~vrv~ 399 (420)
T KOG2096|consen 391 CG-DRYVRVI 399 (420)
T ss_pred ec-ceeeeee
Confidence 87 6667765
No 113
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=5.7e-16 Score=167.69 Aligned_cols=234 Identities=17% Similarity=0.231 Sum_probs=186.8
Q ss_pred CCCcEEEEEEe--CCEEEEEEC--CCcEEEEECCCCCeeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEccCC
Q 001455 793 CSGAVTALIYY--KGLLCSGFS--DGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQR 868 (1074)
Q Consensus 793 H~~~VtsLafS--~~~LaSGs~--DGtVrIWDl~t~~~~~i~tl~gH~~~VtsLafSpdg~~LaSGS~DGtIrIWDl~tg 868 (1074)
+.-.|..++|. +..++.++. |.+||.-++.+.+. ++.|.||...|++++.+|-++.++|++.|++|++||++..
T Consensus 55 kkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNky--lRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~ 132 (311)
T KOG1446|consen 55 KKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKY--LRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVK 132 (311)
T ss_pred ccccccEEEEecCCceEEEccCCCCCceEEEEeecCce--EEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCC
Confidence 34466677776 566666666 89999999999865 8999999999999999999999999999999999999976
Q ss_pred ceEEEEEeccCCCeEEEccCCCeEEEEecCCeEEEEeCC----Cceeeeec----CCCeEEEEEe-CCE-EEEEECCCcE
Q 001455 869 KLELIEVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSS----RTLKDIYR----SKGIKSMSVV-QGK-IYIGCMDSSI 938 (1074)
Q Consensus 869 ~~~~~~~~~h~~~V~s~s~dg~~L~sgS~DgtI~VWDl~----~~l~~l~~----~~~V~sLa~s-dgk-LlaGs~DgsI 938 (1074)
++.. .......++.+++|.|-.++++.....|++||++ +...++.- ......+.|+ +|+ ++.+...+.+
T Consensus 133 ~cqg-~l~~~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~ 211 (311)
T KOG1446|consen 133 KCQG-LLNLSGRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFI 211 (311)
T ss_pred CCce-EEecCCCcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcE
Confidence 6543 3344566788999999999999988899999987 33333322 3458899997 888 6678889999
Q ss_pred EEEEccCCceeeeccccccccCCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEccC-CCCCeEEEEEecCC
Q 001455 939 QELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPE-KGTTIQAMAVVEDF 1017 (1074)
Q Consensus 939 ~IwDl~tg~~~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S~dDgtI~IWDl~t~~~i~~l~g-H~~~VtsLafSPDG 1017 (1074)
++.|.-+|.....+.. .......-....+.|++.++++++ +||+|.+|+..++..+..+.+ +..++.++.|+|..
T Consensus 212 ~~lDAf~G~~~~tfs~---~~~~~~~~~~a~ftPds~Fvl~gs-~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~ 287 (311)
T KOG1446|consen 212 YLLDAFDGTVKSTFSG---YPNAGNLPLSATFTPDSKFVLSGS-DDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRY 287 (311)
T ss_pred EEEEccCCcEeeeEee---ccCCCCcceeEEECCCCcEEEEec-CCCcEEEEEcCCCcEeeEecCCCCCCccccccCCce
Confidence 9999999885443211 112222236778899999999887 889999999999999888888 68899999999988
Q ss_pred CEEEEEECCCcEEEEECC
Q 001455 1018 IYLNYNSSASSLQIWLRG 1035 (1074)
Q Consensus 1018 ~~LaSGS~DGtIrIWDl~ 1035 (1074)
.+++|++ ..+.+|-..
T Consensus 288 ~mf~sa~--s~l~fw~p~ 303 (311)
T KOG1446|consen 288 AMFVSAS--SNLVFWLPD 303 (311)
T ss_pred eeeeecC--ceEEEEecc
Confidence 8888875 678888543
No 114
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.75 E-value=5.3e-17 Score=174.09 Aligned_cols=238 Identities=13% Similarity=0.221 Sum_probs=188.1
Q ss_pred CCCCcEEEEEEe--CCEEEEEECCCcEEEEEC------CCC-------------------------------C-eeEEEE
Q 001455 792 KCSGAVTALIYY--KGLLCSGFSDGSIKMWDI------KKQ-------------------------------S-AMLVWD 831 (1074)
Q Consensus 792 gH~~~VtsLafS--~~~LaSGs~DGtVrIWDl------~t~-------------------------------~-~~~i~t 831 (1074)
||.|.|++|.|+ +.++++++.|++..||.. -.. . ..++..
T Consensus 188 GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ 267 (481)
T KOG0300|consen 188 GHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMR 267 (481)
T ss_pred ccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeee
Confidence 999999999999 557999999999999972 100 0 025677
Q ss_pred eccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEccCCceEEEEEeccCCCeEEEc--cCCCeEEEEecCCeEEEEeCCCc
Q 001455 832 VKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATKEPIRKLD--TYGKTIFASTQGHRMKVIDSSRT 909 (1074)
Q Consensus 832 l~gH~~~VtsLafSpdg~~LaSGS~DGtIrIWDl~tg~~~~~~~~~h~~~V~s~s--~dg~~L~sgS~DgtI~VWDl~~~ 909 (1074)
+.+|.+.|.+..|-..|+.+++++.|.+..+||+++|... ....+|....+..+ |..+.+++.+.|.+.++||.+..
T Consensus 268 ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v-~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFRea 346 (481)
T KOG0300|consen 268 LTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVV-NILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREA 346 (481)
T ss_pred eeccccceEehhhhcCcceeeeeeccccceeeeeccCcee-ccccCcchhccccccCCcceEEEEeccCceeEeccchhh
Confidence 8899999999999999999999999999999999999854 35567887776554 55668899999999999999843
Q ss_pred ---eeeeec-CCCeEEEEEe-CCEEEEEECCCcEEEEEccCCceeeeccccccccCCCCCeEEEEEcCCceEEEEEecCC
Q 001455 910 ---LKDIYR-SKGIKSMSVV-QGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEG 984 (1074)
Q Consensus 910 ---l~~l~~-~~~V~sLa~s-dgkLlaGs~DgsI~IwDl~tg~~~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S~dD 984 (1074)
...+.+ ...|+++.|. +.++++|+.|.+|++||+++-+. |...+ ....+++.++.+.++..++.-. +.
T Consensus 347 I~sV~VFQGHtdtVTS~vF~~dd~vVSgSDDrTvKvWdLrNMRs-----plATI-RtdS~~NRvavs~g~~iIAiPh-DN 419 (481)
T KOG0300|consen 347 IQSVAVFQGHTDTVTSVVFNTDDRVVSGSDDRTVKVWDLRNMRS-----PLATI-RTDSPANRVAVSKGHPIIAIPH-DN 419 (481)
T ss_pred cceeeeecccccceeEEEEecCCceeecCCCceEEEeeeccccC-----cceee-ecCCccceeEeecCCceEEecc-CC
Confidence 344444 4569999998 88899999999999999987432 11111 1267888899988887766554 77
Q ss_pred CeEEEEECCCCCeEE----EccCCCCCeEEEEEecCC--CEEEEEECCCcEEEEECCCC
Q 001455 985 SNIKEWRRHRKPQIS----IAPEKGTTIQAMAVVEDF--IYLNYNSSASSLQIWLRGTQ 1037 (1074)
Q Consensus 985 gtI~IWDl~t~~~i~----~l~gH~~~VtsLafSPDG--~~LaSGS~DGtIrIWDl~tg 1037 (1074)
..|++||++...+.+ .-.+|..-|+|++|..+. .-|++++.|..+.-|++...
T Consensus 420 RqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 420 RQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred ceEEEEecCCCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEeccc
Confidence 899999998766433 335888899999997543 34788899999999987653
No 115
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.75 E-value=1.6e-16 Score=170.57 Aligned_cols=230 Identities=14% Similarity=0.187 Sum_probs=180.1
Q ss_pred ecCCCCCcEEEEEEe--CCEEEEEECCCcEEEEECCCCCeeEEEEeccCCCCEEEEEEcCCCC--EEEEEeCCCeEEEEE
Q 001455 789 ASHKCSGAVTALIYY--KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGE--SLLSGSADKTIGVWQ 864 (1074)
Q Consensus 789 ~~~gH~~~VtsLafS--~~~LaSGs~DGtVrIWDl~t~~~~~i~tl~gH~~~VtsLafSpdg~--~LaSGS~DGtIrIWD 864 (1074)
..+.|.++|.+++|+ +..+++|+.|+.+++||+.+++ ...+..|.++|.++.|-+... .|+|||.|++|+.||
T Consensus 67 a~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q---~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD 143 (347)
T KOG0647|consen 67 AQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ---VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWD 143 (347)
T ss_pred hhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCC---eeeeeecccceeEEEEecCCCcceeEecccccceeecc
Confidence 345899999999999 5589999999999999999986 466788999999999988776 599999999999999
Q ss_pred ccCCceEEEEEeccCCCeEEEccCCCeEEEEecCCeEEEEeCCCceeeeec-----CCCeEEEEEe-CCE-EEEEECCCc
Q 001455 865 MVQRKLELIEVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSSRTLKDIYR-----SKGIKSMSVV-QGK-IYIGCMDSS 937 (1074)
Q Consensus 865 l~tg~~~~~~~~~h~~~V~s~s~dg~~L~sgS~DgtI~VWDl~~~l~~l~~-----~~~V~sLa~s-dgk-LlaGs~Dgs 937 (1074)
.+..... ......+.+++.+.-...++++..++.|.+|+++.....+.. ...++|++.- ++. .+.|+-.|.
T Consensus 144 ~R~~~pv--~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGr 221 (347)
T KOG0647|consen 144 TRSSNPV--ATLQLPERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGR 221 (347)
T ss_pred cCCCCee--eeeeccceeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecce
Confidence 9976543 334556677888877889999999999999999754433332 3358888874 433 566999999
Q ss_pred EEEEEccCCce--eeecccccccc---CCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEccCCCCCeEEEE
Q 001455 938 IQELAVSNNVE--REIKAPFKSWR---LQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMA 1012 (1074)
Q Consensus 938 I~IwDl~tg~~--~~i~~~~r~~~---~h~~~I~sL~~spd~i~las~S~dDgtI~IWDl~t~~~i~~l~gH~~~VtsLa 1012 (1074)
+-+..+..+.. ...+...|.-. ..-..|++++|||....+++.+ .||++.+||.+....+.....|..+|++..
T Consensus 222 v~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaG-sDGtf~FWDkdar~kLk~s~~~~qpItcc~ 300 (347)
T KOG0647|consen 222 VAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAG-SDGTFSFWDKDARTKLKTSETHPQPITCCS 300 (347)
T ss_pred EEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEec-CCceEEEecchhhhhhhccCcCCCccceeE
Confidence 99998887532 22222222111 1123678899999877777666 689999999988888888889999999999
Q ss_pred EecCCCEEEEEE
Q 001455 1013 VVEDFIYLNYNS 1024 (1074)
Q Consensus 1013 fSPDG~~LaSGS 1024 (1074)
|+.+|.++|-+.
T Consensus 301 fn~~G~ifaYA~ 312 (347)
T KOG0647|consen 301 FNRNGSIFAYAL 312 (347)
T ss_pred ecCCCCEEEEEe
Confidence 999999887653
No 116
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=2.2e-16 Score=188.59 Aligned_cols=234 Identities=15% Similarity=0.160 Sum_probs=189.9
Q ss_pred ccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEccCCceEEEEEeccCCCeEEEccCCCeEEEEecCCeEEEEeCCC-cee
Q 001455 833 KEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSSR-TLK 911 (1074)
Q Consensus 833 ~gH~~~VtsLafSpdg~~LaSGS~DGtIrIWDl~tg~~~~~~~~~h~~~V~s~s~dg~~L~sgS~DgtI~VWDl~~-~l~ 911 (1074)
..|+.+-+.++|.|+|.+|++++.||.|++|+.............+...|.++...+.++++++.+++|.+|.... ...
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~~~~ 89 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYSNHFLTGSEQNTVLRYKFPSGEED 89 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeecccceEEeeccceEEEeeCCCCCcc
Confidence 3799999999999999999999999999999976652222122227788899999999999999999999999872 222
Q ss_pred e--eecCCCeEEEEEe-CCE-EEEEECCCcEEEEEccCCceeeeccccccccCCCCCeEEEEEcCCceEEEEEecCCCeE
Q 001455 912 D--IYRSKGIKSMSVV-QGK-IYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNI 987 (1074)
Q Consensus 912 ~--l~~~~~V~sLa~s-dgk-LlaGs~DgsI~IwDl~tg~~~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S~dDgtI 987 (1074)
. ....-++++++|+ +|. +++|+.|-.|++.++.+.... +.+.+|..+|.++.++|++.++++.+ -||.|
T Consensus 90 ~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~------~~lrgh~apVl~l~~~p~~~fLAvss-~dG~v 162 (933)
T KOG1274|consen 90 TILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQE------KVLRGHDAPVLQLSYDPKGNFLAVSS-CDGKV 162 (933)
T ss_pred ceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchh------eeecccCCceeeeeEcCCCCEEEEEe-cCceE
Confidence 2 2235678899998 666 666899999999999875543 34578999999999999999999877 67899
Q ss_pred EEEECCCCCeEEEccCC--------CCCeEEEEEecCCCEEEEEECCCcEEEEECCCCcEEEEEeCC---CCeEEEEEc-
Q 001455 988 KEWRRHRKPQISIAPEK--------GTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAG---SKITSLLTA- 1055 (1074)
Q Consensus 988 ~IWDl~t~~~i~~l~gH--------~~~VtsLafSPDG~~LaSGS~DGtIrIWDl~tg~~l~tL~~h---s~VtsLa~d- 1055 (1074)
++||+.++.+..++.+- ...+..++|+|+|..++..+.|+.|++|+..++.....+... +.+..++|+
T Consensus 163 ~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsP 242 (933)
T KOG1274|consen 163 QIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSP 242 (933)
T ss_pred EEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcC
Confidence 99999998876655432 235678999999888888888999999999999999988764 336666655
Q ss_pred -CCEEEEEECCCcEEEEec
Q 001455 1056 -NDIVLCGTETGLIKGWIP 1073 (1074)
Q Consensus 1056 -g~~LaSGs~DG~IrIWdi 1073 (1074)
|+|||+++.||.|-|||.
T Consensus 243 nG~YiAAs~~~g~I~vWnv 261 (933)
T KOG1274|consen 243 NGKYIAASTLDGQILVWNV 261 (933)
T ss_pred CCcEEeeeccCCcEEEEec
Confidence 889999999999999984
No 117
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.74 E-value=1.1e-16 Score=194.83 Aligned_cols=239 Identities=17% Similarity=0.164 Sum_probs=184.0
Q ss_pred CCCCcEEEEEEe--CCEEEEEECCCcEEEEECCC----C------------CeeEEEEeccCCCCEEEEEEcCCCCEEEE
Q 001455 792 KCSGAVTALIYY--KGLLCSGFSDGSIKMWDIKK----Q------------SAMLVWDVKEHRKAVTSFSLFEPGESLLS 853 (1074)
Q Consensus 792 gH~~~VtsLafS--~~~LaSGs~DGtVrIWDl~t----~------------~~~~i~tl~gH~~~VtsLafSpdg~~LaS 853 (1074)
.|.+.|+|+.|+ +.+||+||.|+.|.||.... . ..+.+..+.+|.+.|..++|+|++.+|++
T Consensus 67 ~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS 146 (942)
T KOG0973|consen 67 DHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVS 146 (942)
T ss_pred cccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEE
Confidence 799999999999 55899999999999999872 0 11356788899999999999999999999
Q ss_pred EeCCCeEEEEEccCCceEEEEEeccCCCeEE--EccCCCeEEEEecCCeEEEEeCCC--ceeeeec-------CCCeEEE
Q 001455 854 GSADKTIGVWQMVQRKLELIEVIATKEPIRK--LDTYGKTIFASTQGHRMKVIDSSR--TLKDIYR-------SKGIKSM 922 (1074)
Q Consensus 854 GS~DGtIrIWDl~tg~~~~~~~~~h~~~V~s--~s~dg~~L~sgS~DgtI~VWDl~~--~l~~l~~-------~~~V~sL 922 (1074)
+|.|++|.|||..+.. ......+|...|.. |+|-|+++++-+.|++|+||++.. ..+.+.. ......+
T Consensus 147 ~s~DnsViiwn~~tF~-~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~Rl 225 (942)
T KOG0973|consen 147 VSLDNSVIIWNAKTFE-LLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRL 225 (942)
T ss_pred ecccceEEEEccccce-eeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeec
Confidence 9999999999999984 45567789988874 789999999999999999999762 3333332 2336788
Q ss_pred EEe-CCEEEEEE-----CCCcEEEEEccCCceeeeccccccccCCCCCeEEEEEcCC------c---------eE-EEEE
Q 001455 923 SVV-QGKIYIGC-----MDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKD------W---------LY-SASS 980 (1074)
Q Consensus 923 a~s-dgkLlaGs-----~DgsI~IwDl~tg~~~~i~~~~r~~~~h~~~I~sL~~spd------~---------i~-las~ 980 (1074)
.|+ ||++++.. .-..+.|.+-.+-+. ...+-+|..++.++.|+|. . .| +++.
T Consensus 226 SWSPDG~~las~nA~n~~~~~~~IieR~tWk~------~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~Av 299 (942)
T KOG0973|consen 226 SWSPDGHHLASPNAVNGGKSTIAIIERGTWKV------DKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAV 299 (942)
T ss_pred ccCCCcCeecchhhccCCcceeEEEecCCcee------eeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEE
Confidence 886 99866521 233466655533111 1345689999999999852 1 12 4555
Q ss_pred ecCCCeEEEEECCCCCeEEEc-cCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCC
Q 001455 981 SVEGSNIKEWRRHRKPQISIA-PEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQ 1037 (1074)
Q Consensus 981 S~dDgtI~IWDl~t~~~i~~l-~gH~~~VtsLafSPDG~~LaSGS~DGtIrIWDl~tg 1037 (1074)
+..|++|.||.....+++... .-....|..++|+|||..|..+|.||+|.+...+..
T Consensus 300 gSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 300 GSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEK 357 (942)
T ss_pred ecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchH
Confidence 559999999998665543322 224568999999999999999999999999987653
No 118
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.74 E-value=3.9e-16 Score=166.57 Aligned_cols=277 Identities=19% Similarity=0.208 Sum_probs=198.6
Q ss_pred CCCCcEEEEEEe---CCEEEEEECCCcEEEEECCCCCe--------eEEE-----EeccCCCCEEEEEEcCCCC-EEEEE
Q 001455 792 KCSGAVTALIYY---KGLLCSGFSDGSIKMWDIKKQSA--------MLVW-----DVKEHRKAVTSFSLFEPGE-SLLSG 854 (1074)
Q Consensus 792 gH~~~VtsLafS---~~~LaSGs~DGtVrIWDl~t~~~--------~~i~-----tl~gH~~~VtsLafSpdg~-~LaSG 854 (1074)
.|.|.|+++.+. +.++++|+.||.|.+||++.... +... .-.+|+-+|.++.|-|-.. .+.++
T Consensus 41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtss 120 (397)
T KOG4283|consen 41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSS 120 (397)
T ss_pred cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecc
Confidence 689999999998 67999999999999999975431 0111 1137888999999998544 57789
Q ss_pred eCCCeEEEEEccCCceEEEEEeccCCCeEE--Ecc---CCCeEEEEecCCeEEEEeCC--Cceeeeec-CCCeEEEEEe-
Q 001455 855 SADKTIGVWQMVQRKLELIEVIATKEPIRK--LDT---YGKTIFASTQGHRMKVIDSS--RTLKDIYR-SKGIKSMSVV- 925 (1074)
Q Consensus 855 S~DGtIrIWDl~tg~~~~~~~~~h~~~V~s--~s~---dg~~L~sgS~DgtI~VWDl~--~~l~~l~~-~~~V~sLa~s- 925 (1074)
+.|.+++|||..+-+.. ......+.|.+ ++| ....+++|..|-.|++.|+. ....++.+ ...|.++.|+
T Consensus 121 SFDhtlKVWDtnTlQ~a--~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp 198 (397)
T KOG4283|consen 121 SFDHTLKVWDTNTLQEA--VDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSP 198 (397)
T ss_pred cccceEEEeecccceee--EEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEecc
Confidence 99999999999886543 33445555653 443 34578888899999999998 34455555 4569999997
Q ss_pred CCE--EEEEECCCcEEEEEccCCc--eee------ecccc-ccccCCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCC
Q 001455 926 QGK--IYIGCMDSSIQELAVSNNV--ERE------IKAPF-KSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHR 994 (1074)
Q Consensus 926 dgk--LlaGs~DgsI~IwDl~tg~--~~~------i~~~~-r~~~~h~~~I~sL~~spd~i~las~S~dDgtI~IWDl~t 994 (1074)
... +++|+.||.|++||++... ... .++|. +.-..|...+..+++..++.++++.+ .|..+++|+...
T Consensus 199 ~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~g-td~r~r~wn~~~ 277 (397)
T KOG4283|consen 199 SSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCG-TDDRIRVWNMES 277 (397)
T ss_pred CceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhcc-CccceEEeeccc
Confidence 333 5569999999999997631 111 11111 12345678899999999999998887 556799999877
Q ss_pred CCeEE-Ecc--CCCC----CeEEEEEecCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCC-eEEEEEcCC--EEEEEEC
Q 001455 995 KPQIS-IAP--EKGT----TIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAGSK-ITSLLTAND--IVLCGTE 1064 (1074)
Q Consensus 995 ~~~i~-~l~--gH~~----~VtsLafSPDG~~LaSGS~DGtIrIWDl~tg~~l~tL~~hs~-VtsLa~dg~--~LaSGs~ 1064 (1074)
|.... .+. .|.. .+. +. +.+...++---.|+.+.++++-.|..+..+.+|.+ |.|.++.++ ..++|..
T Consensus 278 G~ntl~~~g~~~~n~~~~~~~~-~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq~~~tg~~ 355 (397)
T KOG4283|consen 278 GRNTLREFGPIIHNQTTSFAVH-IQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDFEQCFTGDM 355 (397)
T ss_pred CcccccccccccccccccceEE-Ee-ecccceEEEEecCCeEEEEEccCceEEEeeecccceeeEEeecCchhhhhcccc
Confidence 65211 110 1111 111 22 23333344334568999999999999999999966 888777766 7899999
Q ss_pred CCcEEEEec
Q 001455 1065 TGLIKGWIP 1073 (1074)
Q Consensus 1065 DG~IrIWdi 1073 (1074)
|+.|..|.|
T Consensus 356 d~ni~~w~p 364 (397)
T KOG4283|consen 356 NGNIYMWSP 364 (397)
T ss_pred CCccccccc
Confidence 999999976
No 119
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=3.5e-16 Score=168.35 Aligned_cols=265 Identities=15% Similarity=0.177 Sum_probs=188.7
Q ss_pred EEEEEEe--CCEEEEEECCCcEEEEECCCCCeeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEccCCceEEEE
Q 001455 797 VTALIYY--KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIE 874 (1074)
Q Consensus 797 VtsLafS--~~~LaSGs~DGtVrIWDl~t~~~~~i~tl~gH~~~VtsLafSpdg~~LaSGS~DGtIrIWDl~tg~~~~~~ 874 (1074)
-.|+.|+ |.++|+|..||.|.|||+.+... -..+.+|..+|++++||++|+.|+|+|.|..|.+||+..|.+..
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~i--ar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~-- 101 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRI--ARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLK-- 101 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccch--hhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCcee--
Confidence 7899999 78999999999999999998753 56788999999999999999999999999999999999998543
Q ss_pred EeccCCCeEE--EccCCCeEEEE-ecCCeEEEEeCCCceeeeec---CC----CeEEEEEe-CCE-EEEEECCCcEEEEE
Q 001455 875 VIATKEPIRK--LDTYGKTIFAS-TQGHRMKVIDSSRTLKDIYR---SK----GIKSMSVV-QGK-IYIGCMDSSIQELA 942 (1074)
Q Consensus 875 ~~~h~~~V~s--~s~dg~~L~sg-S~DgtI~VWDl~~~l~~l~~---~~----~V~sLa~s-dgk-LlaGs~DgsI~IwD 942 (1074)
.....++|.. +.|.....+.+ -.+..-.+-++......... .+ .-.+..|. .|+ +++|...|.+.++|
T Consensus 102 rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~ 181 (405)
T KOG1273|consen 102 RIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYD 181 (405)
T ss_pred EEEccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEe
Confidence 3456677765 55554433333 23333334444422222221 11 11223344 444 88899999999999
Q ss_pred ccCCceeeeccccccccCC-CCCeEEEEEcCCceEEEEEecCCCeEEEEECCC----C---Ce--EEEcc--CCCCCeEE
Q 001455 943 VSNNVEREIKAPFKSWRLQ-SKPINSLVVYKDWLYSASSSVEGSNIKEWRRHR----K---PQ--ISIAP--EKGTTIQA 1010 (1074)
Q Consensus 943 l~tg~~~~i~~~~r~~~~h-~~~I~sL~~spd~i~las~S~dDgtI~IWDl~t----~---~~--i~~l~--gH~~~Vts 1010 (1074)
..+-+..... +.. ...|..+.++..+.+++..+ .|..|+.|+... | +. .+.+. -....-.+
T Consensus 182 a~t~e~vas~------rits~~~IK~I~~s~~g~~liiNt-sDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ 254 (405)
T KOG1273|consen 182 AETLECVASF------RITSVQAIKQIIVSRKGRFLIINT-SDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKK 254 (405)
T ss_pred cchheeeeee------eechheeeeEEEEeccCcEEEEec-CCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhh
Confidence 9986543322 222 36788899998888887655 789999999652 1 11 01110 01223467
Q ss_pred EEEecCCCEEEEEE-CCCcEEEEECCCCcEEEEEeCCC-C-eEEEEEcCC--EEEEEECCCcEEEEec
Q 001455 1011 MAVVEDFIYLNYNS-SASSLQIWLRGTQQKVGRISAGS-K-ITSLLTAND--IVLCGTETGLIKGWIP 1073 (1074)
Q Consensus 1011 LafSPDG~~LaSGS-~DGtIrIWDl~tg~~l~tL~~hs-~-VtsLa~dg~--~LaSGs~DG~IrIWdi 1073 (1074)
++||.+|.|++.|+ .-..++||....|..++.+.|.. . ...+.|++- .+++- ..|.|++|..
T Consensus 255 ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~ 321 (405)
T KOG1273|consen 255 CCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWAV 321 (405)
T ss_pred eeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec-cCCceEEEEe
Confidence 89999999998877 45779999999999999998873 3 777888854 44444 7899999975
No 120
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.73 E-value=1e-16 Score=167.66 Aligned_cols=236 Identities=12% Similarity=0.132 Sum_probs=180.5
Q ss_pred ccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEccCCc--eEEEEEeccCCCeEEEc----cCCCeEEEEecCCeEEEEeC
Q 001455 833 KEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRK--LELIEVIATKEPIRKLD----TYGKTIFASTQGHRMKVIDS 906 (1074)
Q Consensus 833 ~gH~~~VtsLafSpdg~~LaSGS~DGtIrIWDl~tg~--~~~~~~~~h~~~V~s~s----~dg~~L~sgS~DgtI~VWDl 906 (1074)
..|.+.|..+...-.|+.|+||+.|++|+|+.++++. .......+|.+||..+. ..|..|++++.||.|.||.-
T Consensus 8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke 87 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKE 87 (299)
T ss_pred hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEec
Confidence 5799999999998899999999999999999998754 35567789999998754 25789999999999999997
Q ss_pred CCce----ee-eecCCCeEEEEEe-C--CE-EEEEECCCcEEEEEccCC-ceeeeccccccccCCCCCeEEEEEcCC---
Q 001455 907 SRTL----KD-IYRSKGIKSMSVV-Q--GK-IYIGCMDSSIQELAVSNN-VEREIKAPFKSWRLQSKPINSLVVYKD--- 973 (1074)
Q Consensus 907 ~~~l----~~-l~~~~~V~sLa~s-d--gk-LlaGs~DgsI~IwDl~tg-~~~~i~~~~r~~~~h~~~I~sL~~spd--- 973 (1074)
.+.. .. ..+...|++++|. . |- +++++.||.|.+++.++. .... .+....|...++++.+.|.
T Consensus 88 ~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t----~ki~~aH~~GvnsVswapa~~~ 163 (299)
T KOG1332|consen 88 ENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTT----SKIVFAHEIGVNSVSWAPASAP 163 (299)
T ss_pred CCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccc----hhhhhccccccceeeecCcCCC
Confidence 7321 11 1235569999994 3 33 667999999999999875 2211 1344678888999998876
Q ss_pred c-----------eEEEEEecCCCeEEEEECCCCC--eEEEccCCCCCeEEEEEecCC----CEEEEEECCCcEEEEECCC
Q 001455 974 W-----------LYSASSSVEGSNIKEWRRHRKP--QISIAPEKGTTIQAMAVVEDF----IYLNYNSSASSLQIWLRGT 1036 (1074)
Q Consensus 974 ~-----------i~las~S~dDgtI~IWDl~t~~--~i~~l~gH~~~VtsLafSPDG----~~LaSGS~DGtIrIWDl~t 1036 (1074)
| ..+++++ -|..|+||+...+. .-+++.+|.+.|+.++|.|.- .+||++|.||+|.||..+.
T Consensus 164 g~~~~~~~~~~~krlvSgG-cDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~ 242 (299)
T KOG1332|consen 164 GSLVDQGPAAKVKRLVSGG-CDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDE 242 (299)
T ss_pred ccccccCcccccceeeccC-CccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecC
Confidence 3 2355555 67899999988764 345688999999999999954 5799999999999997542
Q ss_pred --CcEEEEEe--CCCCeEEEEEc--CCEEEEEECCCcEEEEec
Q 001455 1037 --QQKVGRIS--AGSKITSLLTA--NDIVLCGTETGLIKGWIP 1073 (1074)
Q Consensus 1037 --g~~l~tL~--~hs~VtsLa~d--g~~LaSGs~DG~IrIWdi 1073 (1074)
...-.++- ....++.++|+ |+.|+.++.|+.|.+|..
T Consensus 243 e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke 285 (299)
T KOG1332|consen 243 EYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKE 285 (299)
T ss_pred ccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEe
Confidence 11122221 12458887775 999999999999999974
No 121
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.73 E-value=2.5e-16 Score=176.44 Aligned_cols=278 Identities=15% Similarity=0.177 Sum_probs=200.5
Q ss_pred CCCCcEEEEEEe---C-CEEEEEECCCcEEEEECCCC--CeeEEEEeccCCCCEEEEEEcCCCCE-EEEEeCCCeEEEEE
Q 001455 792 KCSGAVTALIYY---K-GLLCSGFSDGSIKMWDIKKQ--SAMLVWDVKEHRKAVTSFSLFEPGES-LLSGSADKTIGVWQ 864 (1074)
Q Consensus 792 gH~~~VtsLafS---~-~~LaSGs~DGtVrIWDl~t~--~~~~i~tl~gH~~~VtsLafSpdg~~-LaSGS~DGtIrIWD 864 (1074)
-|.++|++++|+ + .++|+|..-|+|-+||+.+. ...-+..+..|.++|.++.|+|.... +++.|.||+|++-|
T Consensus 184 v~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D 263 (498)
T KOG4328|consen 184 VTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQD 263 (498)
T ss_pred ecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeee
Confidence 568999999999 3 47999999999999999532 22346778899999999999997654 99999999999999
Q ss_pred ccCCceEEEEEeccCCC-eEE--EccCCCeEEEEecCCeEEEEeCCCcee----eeecCCCeEEEEEe--CCE-EEEEEC
Q 001455 865 MVQRKLELIEVIATKEP-IRK--LDTYGKTIFASTQGHRMKVIDSSRTLK----DIYRSKGIKSMSVV--QGK-IYIGCM 934 (1074)
Q Consensus 865 l~tg~~~~~~~~~h~~~-V~s--~s~dg~~L~sgS~DgtI~VWDl~~~l~----~l~~~~~V~sLa~s--dgk-LlaGs~ 934 (1074)
++++............. +.. ++.....++++..=|.+.+||.+..-. ...+...|.+|++. ... +++++.
T Consensus 264 ~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~ 343 (498)
T KOG4328|consen 264 FEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASL 343 (498)
T ss_pred ecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeeccc
Confidence 98765432222221222 222 456666777887777999999883222 22235579999995 333 777999
Q ss_pred CCcEEEEEccCCceeeeccccccccCCCCCeEEEEEcCCceEEEEEecCCCeEEEEECC----CCCeEEEcc---CCCCC
Q 001455 935 DSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRH----RKPQISIAP---EKGTT 1007 (1074)
Q Consensus 935 DgsI~IwDl~tg~~~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S~dDgtI~IWDl~----t~~~i~~l~---gH~~~ 1007 (1074)
|++.+|||++.-..+.. |.-....|...|.+..|+|.+..+++.+ .|..|+|||.. ......++. .+..+
T Consensus 344 D~T~kIWD~R~l~~K~s--p~lst~~HrrsV~sAyFSPs~gtl~TT~-~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~Rw 420 (498)
T KOG4328|consen 344 DQTAKIWDLRQLRGKAS--PFLSTLPHRRSVNSAYFSPSGGTLLTTC-QDNEIRVFDSSCISAKDEPLGTIPHNNRTGRW 420 (498)
T ss_pred CcceeeeehhhhcCCCC--cceecccccceeeeeEEcCCCCceEeec-cCCceEEeecccccccCCccceeeccCccccc
Confidence 99999999987332221 2223346789999999999988877766 78899999973 222222221 12222
Q ss_pred --eEEEEEecCCCEEEEEECCCcEEEEECCCCcEEEEEeCCC--CeEE---EEEcCC-EEEEEECCCcEEEEe
Q 001455 1008 --IQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAGS--KITS---LLTAND-IVLCGTETGLIKGWI 1072 (1074)
Q Consensus 1008 --VtsLafSPDG~~LaSGS~DGtIrIWDl~tg~~l~tL~~hs--~Vts---La~dg~-~LaSGs~DG~IrIWd 1072 (1074)
.....|.|+..+|++|-.-..|-|+|-..++.+..+.... .|.+ +.+-+. +++.|+..|.|+||.
T Consensus 421 lT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft 493 (498)
T KOG4328|consen 421 LTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFT 493 (498)
T ss_pred ccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEEe
Confidence 3345799999999999999999999999999898887662 2444 444455 555666788999984
No 122
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.73 E-value=2.9e-16 Score=181.36 Aligned_cols=267 Identities=15% Similarity=0.129 Sum_probs=190.5
Q ss_pred EEEEEECCCcEEEEECCCCCee----EEEEeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEccCCceEEE-EEeccCC
Q 001455 806 LLCSGFSDGSIKMWDIKKQSAM----LVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELI-EVIATKE 880 (1074)
Q Consensus 806 ~LaSGs~DGtVrIWDl~t~~~~----~i~tl~gH~~~VtsLafSpdg~~LaSGS~DGtIrIWDl~tg~~~~~-~~~~h~~ 880 (1074)
.|+.+..||.|.++|....... .+..+..|..+|..+.|.|....|++++.|.++++||+.++++... ...+|..
T Consensus 66 iLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~ 145 (720)
T KOG0321|consen 66 ILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTG 145 (720)
T ss_pred eEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeeccccc
Confidence 6999999999999998765432 2345568999999999999666799999999999999998876543 3568888
Q ss_pred CeEE--Ecc-CCCeEEEEecCCeEEEEeCCCce---------------ee-------e--------ecCC----CeEEEE
Q 001455 881 PIRK--LDT-YGKTIFASTQGHRMKVIDSSRTL---------------KD-------I--------YRSK----GIKSMS 923 (1074)
Q Consensus 881 ~V~s--~s~-dg~~L~sgS~DgtI~VWDl~~~l---------------~~-------l--------~~~~----~V~sLa 923 (1074)
.|.+ |.+ +...+++|+.||.|.|||++... .. . .... .|+.+.
T Consensus 146 SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~ 225 (720)
T KOG0321|consen 146 SVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVL 225 (720)
T ss_pred ccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEE
Confidence 8875 444 45689999999999999986110 00 0 0011 245566
Q ss_pred Ee-CCEEEEEE-CCCcEEEEEccCCceeeeccccc--cccCC---CCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCC
Q 001455 924 VV-QGKIYIGC-MDSSIQELAVSNNVEREIKAPFK--SWRLQ---SKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKP 996 (1074)
Q Consensus 924 ~s-dgkLlaGs-~DgsI~IwDl~tg~~~~i~~~~r--~~~~h---~~~I~sL~~spd~i~las~S~dDgtI~IWDl~t~~ 996 (1074)
|- +..+++++ .|+.|++||++......-..+.. .+..+ ...+.++.....|.++++.. .|+.|..||+.+-.
T Consensus 226 fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsC-tD~sIy~ynm~s~s 304 (720)
T KOG0321|consen 226 FKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASC-TDNSIYFYNMRSLS 304 (720)
T ss_pred EeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEe-cCCcEEEEeccccC
Confidence 65 44577644 59999999998855433222211 11222 34567777777778877655 58999999976533
Q ss_pred --eEEEccCCCCC--eEEEEEecCCCEEEEEECCCcEEEEECCCCcE-EEEEeCCCC-eEEEEEcCC---EEEEEECCCc
Q 001455 997 --QISIAPEKGTT--IQAMAVVEDFIYLNYNSSASSLQIWLRGTQQK-VGRISAGSK-ITSLLTAND---IVLCGTETGL 1067 (1074)
Q Consensus 997 --~i~~l~gH~~~--VtsLafSPDG~~LaSGS~DGtIrIWDl~tg~~-l~tL~~hs~-VtsLa~dg~---~LaSGs~DG~ 1067 (1074)
.+..+.++... -..-..+||+.++++|+.|...++|.+.+.+. ...+.+|.. |+++.|.+. -++++++|.+
T Consensus 305 ~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~ 384 (720)
T KOG0321|consen 305 ISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFR 384 (720)
T ss_pred cCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcc
Confidence 33444444321 11224589999999999999999999888665 566677754 999998633 5677799999
Q ss_pred EEEEec
Q 001455 1068 IKGWIP 1073 (1074)
Q Consensus 1068 IrIWdi 1073 (1074)
++||++
T Consensus 385 ~kiW~l 390 (720)
T KOG0321|consen 385 VKIWRL 390 (720)
T ss_pred eEEEec
Confidence 999986
No 123
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.73 E-value=3.8e-17 Score=191.91 Aligned_cols=230 Identities=15% Similarity=0.195 Sum_probs=176.2
Q ss_pred cEEEEEEe---CCEEEEEECCCcEEEEECCCC-CeeEEEEeccCCCCEEEEEEcCCCCE-EEEEeCCCeEEEEEccCCce
Q 001455 796 AVTALIYY---KGLLCSGFSDGSIKMWDIKKQ-SAMLVWDVKEHRKAVTSFSLFEPGES-LLSGSADKTIGVWQMVQRKL 870 (1074)
Q Consensus 796 ~VtsLafS---~~~LaSGs~DGtVrIWDl~t~-~~~~i~tl~gH~~~VtsLafSpdg~~-LaSGS~DGtIrIWDl~tg~~ 870 (1074)
.+..|.|. .++|||++..|.|.+||+... ....+..|..|...|+++.|++...+ |+|||.||+|++||++..+.
T Consensus 89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S 168 (839)
T KOG0269|consen 89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS 168 (839)
T ss_pred ehhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccc
Confidence 45556676 678999999999999999862 12346678999999999999998776 88999999999999987542
Q ss_pred EEEEEeccCCCeEEEccCCCeEEEEecCCeEEEEeCCCceeeeecCCCeEEEEEe---CCEEEEEECCCcEEEEEccCCc
Q 001455 871 ELIEVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSSRTLKDIYRSKGIKSMSVV---QGKIYIGCMDSSIQELAVSNNV 947 (1074)
Q Consensus 871 ~~~~~~~h~~~V~s~s~dg~~L~sgS~DgtI~VWDl~~~l~~l~~~~~V~sLa~s---dgkLlaGs~DgsI~IwDl~tg~ 947 (1074)
.... .+ ....|+.+.|+ +.+++++...|.++.||++...
T Consensus 169 ~~t~-~~-------------------------------------nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~ 210 (839)
T KOG0269|consen 169 KSTF-RS-------------------------------------NSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPD 210 (839)
T ss_pred cccc-cc-------------------------------------cchhhhceeeccCCCceEEEecCCceEEEeeccCch
Confidence 2110 00 12346777774 4457778888999999998743
Q ss_pred eeeeccccccccCCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEcc-CCCCCeEEEEEecCCCE-EEEEE-
Q 001455 948 EREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAP-EKGTTIQAMAVVEDFIY-LNYNS- 1024 (1074)
Q Consensus 948 ~~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S~dDgtI~IWDl~t~~~i~~l~-gH~~~VtsLafSPDG~~-LaSGS- 1024 (1074)
. ....+..|.+++.++.+||++.++++++ .|+.|+|||..+.+...... ....+|.++.|-|+..+ |++++
T Consensus 211 r-----~~~k~~AH~GpV~c~nwhPnr~~lATGG-RDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsm 284 (839)
T KOG0269|consen 211 R-----CEKKLTAHNGPVLCLNWHPNREWLATGG-RDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSM 284 (839)
T ss_pred h-----HHHHhhcccCceEEEeecCCCceeeecC-CCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhc
Confidence 3 2245578999999999999999999998 88999999987655433222 23468999999997765 56555
Q ss_pred -CCCcEEEEECC-CCcEEEEEeCCCC-eEEEEEcC---CEEEEEECCCcEE
Q 001455 1025 -SASSLQIWLRG-TQQKVGRISAGSK-ITSLLTAN---DIVLCGTETGLIK 1069 (1074)
Q Consensus 1025 -~DGtIrIWDl~-tg~~l~tL~~hs~-VtsLa~dg---~~LaSGs~DG~Ir 1069 (1074)
.|-.|+|||+. ..-+..++..|.. ++.++|.+ ..+.+++.||+|.
T Consensus 285 v~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~ 335 (839)
T KOG0269|consen 285 VVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVL 335 (839)
T ss_pred cccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHH
Confidence 68899999965 4556788888966 77799974 3888999999864
No 124
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.73 E-value=7.4e-17 Score=182.18 Aligned_cols=244 Identities=15% Similarity=0.166 Sum_probs=175.1
Q ss_pred EEEeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEccCCceE----EEEEe--ccCCCeEEEccCCCeEEEEecCCeEE
Q 001455 829 VWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLE----LIEVI--ATKEPIRKLDTYGKTIFASTQGHRMK 902 (1074)
Q Consensus 829 i~tl~gH~~~VtsLafSpdg~~LaSGS~DGtIrIWDl~tg~~~----~~~~~--~h~~~V~s~s~dg~~L~sgS~DgtI~ 902 (1074)
-..+++|+..|.++++.|.|..|+|||.|.+|++||+..-... ....+ .|......+++.|..|++.+.....+
T Consensus 160 Ei~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqak 239 (641)
T KOG0772|consen 160 EIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAK 239 (641)
T ss_pred eEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCccee
Confidence 3567899999999999999999999999999999998642211 11112 23333445789999999999999999
Q ss_pred EEeCCCceee-----------eec----CCCeEEEEEe---CCEEEEEECCCcEEEEEccCCceeeeccccccccCCCCC
Q 001455 903 VIDSSRTLKD-----------IYR----SKGIKSMSVV---QGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKP 964 (1074)
Q Consensus 903 VWDl~~~l~~-----------l~~----~~~V~sLa~s---dgkLlaGs~DgsI~IwDl~tg~~~~i~~~~r~~~~h~~~ 964 (1074)
++|-.+.... +.. ...++|.+|. .+.+++++.||++++||+...+........+...+...+
T Consensus 240 l~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~ 319 (641)
T KOG0772|consen 240 LLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVP 319 (641)
T ss_pred EEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccC
Confidence 9997742221 111 1237788884 344899999999999999875432211111233455678
Q ss_pred eEEEEEcCCceEEEEEecCCCeEEEEECCCC---CeEEEccCCCC--CeEEEEEecCCCEEEEEECCCcEEEEECCCCc-
Q 001455 965 INSLVVYKDWLYSASSSVEGSNIKEWRRHRK---PQISIAPEKGT--TIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQ- 1038 (1074)
Q Consensus 965 I~sL~~spd~i~las~S~dDgtI~IWDl~t~---~~i~~l~gH~~--~VtsLafSPDG~~LaSGS~DGtIrIWDl~tg~- 1038 (1074)
+++.+|++++..++++. .||.|.+|+..+. .....-..|.. .|+++.||+||++|+|-|.|+++++||++..+
T Consensus 320 ~tsC~~nrdg~~iAagc-~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kk 398 (641)
T KOG0772|consen 320 VTSCAWNRDGKLIAAGC-LDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKK 398 (641)
T ss_pred ceeeecCCCcchhhhcc-cCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeecccccc
Confidence 99999999999977665 8899999996432 23444456766 89999999999999999999999999987644
Q ss_pred EEEEEeCC---CCeEE--EEEcCCEEEEEEC------CCcEEEEec
Q 001455 1039 KVGRISAG---SKITS--LLTANDIVLCGTE------TGLIKGWIP 1073 (1074)
Q Consensus 1039 ~l~tL~~h---s~Vts--La~dg~~LaSGs~------DG~IrIWdi 1073 (1074)
++.+..+- .+-+. ++++.++|++|+. .|++.+||.
T Consensus 399 pL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~ 444 (641)
T KOG0772|consen 399 PLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDR 444 (641)
T ss_pred chhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEec
Confidence 45555432 22233 5556668888765 456777764
No 125
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.73 E-value=3.7e-16 Score=181.85 Aligned_cols=283 Identities=12% Similarity=0.126 Sum_probs=215.1
Q ss_pred CCCCCcEEEEEEe-CC-EEEEEECCCcEEEEECCCCCee-----EEEEeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEE
Q 001455 791 HKCSGAVTALIYY-KG-LLCSGFSDGSIKMWDIKKQSAM-----LVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVW 863 (1074)
Q Consensus 791 ~gH~~~VtsLafS-~~-~LaSGs~DGtVrIWDl~t~~~~-----~i~tl~gH~~~VtsLafSpdg~~LaSGS~DGtIrIW 863 (1074)
.||.+.|.++.|+ .+ .|++++.|.++.+|...+.... .+..+.|..++....-|+|++..+++-|..|..++|
T Consensus 264 ~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlW 343 (764)
T KOG1063|consen 264 MGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLW 343 (764)
T ss_pred cCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEE
Confidence 4999999999999 44 6999999999999988765322 223333455678999999999999999999999999
Q ss_pred EccC-Cce-EEEEEeccCCCeEEE--ccCCCeEEEEecCCeEEEEeCCCcee-------eeecCCCeEEEEEe--CCEEE
Q 001455 864 QMVQ-RKL-ELIEVIATKEPIRKL--DTYGKTIFASTQGHRMKVIDSSRTLK-------DIYRSKGIKSMSVV--QGKIY 930 (1074)
Q Consensus 864 Dl~t-g~~-~~~~~~~h~~~V~s~--s~dg~~L~sgS~DgtI~VWDl~~~l~-------~l~~~~~V~sLa~s--dgkLl 930 (1074)
.... ... ......+|...|..+ +|.|.++++++.|.+-+++-.-+... ...++...+|+++- +-+++
T Consensus 344 kt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FV 423 (764)
T KOG1063|consen 344 KTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFV 423 (764)
T ss_pred eccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCceee
Confidence 8333 222 223445888899875 56699999999999999987652111 12234558899885 44588
Q ss_pred EEECCCcEEEEEccCC-------------------------------------------ce-------------------
Q 001455 931 IGCMDSSIQELAVSNN-------------------------------------------VE------------------- 948 (1074)
Q Consensus 931 aGs~DgsI~IwDl~tg-------------------------------------------~~------------------- 948 (1074)
+|.....+|+|+...+ ..
T Consensus 424 SgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~eP 503 (764)
T KOG1063|consen 424 SGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEP 503 (764)
T ss_pred ecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCC
Confidence 8888888999976210 00
Q ss_pred --------eeeccccccccCCCCCeEEEEEcCCceEEEEEec----CCCeEEEEECCCCCeEEEccCCCCCeEEEEEecC
Q 001455 949 --------REIKAPFKSWRLQSKPINSLVVYKDWLYSASSSV----EGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVED 1016 (1074)
Q Consensus 949 --------~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S~----dDgtI~IWDl~t~~~i~~l~gH~~~VtsLafSPD 1016 (1074)
.+..+.++.+.+|+..|++++.+|++.++++... +...|++|+..+-...+.+.+|.-.|+.++||||
T Consensus 504 P~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpd 583 (764)
T KOG1063|consen 504 PTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPD 583 (764)
T ss_pred ChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCC
Confidence 0011122344578999999999999999887652 3347999999998888899999999999999999
Q ss_pred CCEEEEEECCCcEEEEECCCCcE----EEEEeCCCC-eEEEEEc--CCEEEEEECCCcEEEEec
Q 001455 1017 FIYLNYNSSASSLQIWLRGTQQK----VGRISAGSK-ITSLLTA--NDIVLCGTETGLIKGWIP 1073 (1074)
Q Consensus 1017 G~~LaSGS~DGtIrIWDl~tg~~----l~tL~~hs~-VtsLa~d--g~~LaSGs~DG~IrIWdi 1073 (1074)
|+||++.|.|.++.+|....... ....+.|.+ |++.+|+ +.+++++|.|.+|+||..
T Consensus 584 g~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~ 647 (764)
T KOG1063|consen 584 GRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEE 647 (764)
T ss_pred CcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEec
Confidence 99999999999999998644322 233667777 8887776 558999999999999964
No 126
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=1.4e-15 Score=181.93 Aligned_cols=256 Identities=13% Similarity=0.155 Sum_probs=186.8
Q ss_pred CCCCcEEEEEEe--CCEEEEEECCCcEEEEECCCCCeeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEccCCc
Q 001455 792 KCSGAVTALIYY--KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRK 869 (1074)
Q Consensus 792 gH~~~VtsLafS--~~~LaSGs~DGtVrIWDl~t~~~~~i~tl~gH~~~VtsLafSpdg~~LaSGS~DGtIrIWDl~tg~ 869 (1074)
.|++.-+.|+|. +.+|++++.||.|++|+....... ..++.-|...|.+++- ++.+|++|+.+++|.+|.+..+.
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~-P~ti~~~g~~v~~ia~--~s~~f~~~s~~~tv~~y~fps~~ 87 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEE-PETIDISGELVSSIAC--YSNHFLTGSEQNTVLRYKFPSGE 87 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccC-CchhhccCceeEEEee--cccceEEeeccceEEEeeCCCCC
Confidence 688889999999 668999999999999998765211 2333337788888886 45589999999999999998876
Q ss_pred eEEEEEeccCC--CeEEEccCCCeEEEEecCCeEEEEeCC--Cceeeeec-CCCeEEEEEe-CCEEE-EEECCCcEEEEE
Q 001455 870 LELIEVIATKE--PIRKLDTYGKTIFASTQGHRMKVIDSS--RTLKDIYR-SKGIKSMSVV-QGKIY-IGCMDSSIQELA 942 (1074)
Q Consensus 870 ~~~~~~~~h~~--~V~s~s~dg~~L~sgS~DgtI~VWDl~--~~l~~l~~-~~~V~sLa~s-dgkLl-aGs~DgsI~IwD 942 (1074)
.. .......- .+.+++.+|.+++.|+.|-.|++.++. .....+.+ ..+|.++.|. ++.++ +.+.||.|++||
T Consensus 88 ~~-~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~ 166 (933)
T KOG1274|consen 88 ED-TILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWD 166 (933)
T ss_pred cc-ceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEE
Confidence 42 12222333 345678899999999999999999987 34444444 5679999996 77755 488899999999
Q ss_pred ccCCceeeecccc-ccccCC-CCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEccC--CCCCeEEEEEecCCC
Q 001455 943 VSNNVEREIKAPF-KSWRLQ-SKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPE--KGTTIQAMAVVEDFI 1018 (1074)
Q Consensus 943 l~tg~~~~i~~~~-r~~~~h-~~~I~sL~~spd~i~las~S~dDgtI~IWDl~t~~~i~~l~g--H~~~VtsLafSPDG~ 1018 (1074)
+.++........+ ...... ...+..++|||++..++... .|+.|++|+..+......+.. +...+..+.|+|+|+
T Consensus 167 ~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~-~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~ 245 (933)
T KOG1274|consen 167 LQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPP-VDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGK 245 (933)
T ss_pred cccchhhhhcccCCccccccccceeeeeeecCCCCeEEeec-cCCeEEEEccCCceeheeecccccccceEEEEEcCCCc
Confidence 9987653322111 111112 45677899999955444443 578999999998876555543 344599999999999
Q ss_pred EEEEEECCCcEEEEECCCCcEEEEEeCCCCeEEEEEc
Q 001455 1019 YLNYNSSASSLQIWLRGTQQKVGRISAGSKITSLLTA 1055 (1074)
Q Consensus 1019 ~LaSGS~DGtIrIWDl~tg~~l~tL~~hs~VtsLa~d 1055 (1074)
|||+++.||.|-|||.++-.. -.....|.+++|.
T Consensus 246 YiAAs~~~g~I~vWnv~t~~~---~~~~~~Vc~~aw~ 279 (933)
T KOG1274|consen 246 YIAASTLDGQILVWNVDTHER---HEFKRAVCCEAWK 279 (933)
T ss_pred EEeeeccCCcEEEEecccchh---ccccceeEEEecC
Confidence 999999999999999997211 1111347777775
No 127
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.72 E-value=1.9e-17 Score=180.78 Aligned_cols=235 Identities=12% Similarity=0.096 Sum_probs=185.8
Q ss_pred EEEeccCCCCEEEEEEcCCC-CEEEEEeCCCeEEEEEccCCceEEEEEeccCCCeEEEccCCCeEEEEecCCeEEEEeCC
Q 001455 829 VWDVKEHRKAVTSFSLFEPG-ESLLSGSADKTIGVWQMVQRKLELIEVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSS 907 (1074)
Q Consensus 829 i~tl~gH~~~VtsLafSpdg-~~LaSGS~DGtIrIWDl~tg~~~~~~~~~h~~~V~s~s~dg~~L~sgS~DgtI~VWDl~ 907 (1074)
+..+.||.++|.|++=+|.. ..++||+.||.|++||+.+..+. ..+..|.+.|..+..+...+++++.|.+|+.|.+.
T Consensus 59 v~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~-~~f~AH~G~V~Gi~v~~~~~~tvgdDKtvK~wk~~ 137 (433)
T KOG0268|consen 59 VGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECI-RTFKAHEGLVRGICVTQTSFFTVGDDKTVKQWKID 137 (433)
T ss_pred hhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhh-heeecccCceeeEEecccceEEecCCcceeeeecc
Confidence 55678999999999999987 55999999999999999876543 35678999999988888999999999999999988
Q ss_pred Cc-eeeeecCCCeEEEEEe--CCEEEEEECCCcEEEEEccCCceeeeccccccccCCCCCeEEEEEcCCceEEEEEecCC
Q 001455 908 RT-LKDIYRSKGIKSMSVV--QGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEG 984 (1074)
Q Consensus 908 ~~-l~~l~~~~~V~sLa~s--dgkLlaGs~DgsI~IwDl~tg~~~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S~dD 984 (1074)
.. ..++.....+..+... ++.++++| ..|.|||.... .|...+......|.++.++|....+++++..|
T Consensus 138 ~~p~~tilg~s~~~gIdh~~~~~~FaTcG--e~i~IWD~~R~------~Pv~smswG~Dti~svkfNpvETsILas~~sD 209 (433)
T KOG0268|consen 138 GPPLHTILGKSVYLGIDHHRKNSVFATCG--EQIDIWDEQRD------NPVSSMSWGADSISSVKFNPVETSILASCASD 209 (433)
T ss_pred CCcceeeeccccccccccccccccccccC--ceeeecccccC------CccceeecCCCceeEEecCCCcchheeeeccC
Confidence 53 3344445555565554 22333333 46899999763 33455566678899999999988777766689
Q ss_pred CeEEEEECCCCCeEEEccCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCC-cEEEEEeCC-CCeEEEEEc--CCEEE
Q 001455 985 SNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQ-QKVGRISAG-SKITSLLTA--NDIVL 1060 (1074)
Q Consensus 985 gtI~IWDl~t~~~i~~l~gH~~~VtsLafSPDG~~LaSGS~DGtIrIWDl~tg-~~l~tL~~h-s~VtsLa~d--g~~La 1060 (1074)
+.|.+||.+++.+++... -...-+.++|+|.+--+++|++|..++.||++.. .++..+.+| +.|.++.|+ |+-++
T Consensus 210 rsIvLyD~R~~~Pl~KVi-~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~Efv 288 (433)
T KOG0268|consen 210 RSIVLYDLRQASPLKKVI-LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFV 288 (433)
T ss_pred CceEEEecccCCccceee-eeccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhc
Confidence 999999998887665442 2234568999998888999999999999997764 458888888 559998876 88999
Q ss_pred EEECCCcEEEEec
Q 001455 1061 CGTETGLIKGWIP 1073 (1074)
Q Consensus 1061 SGs~DG~IrIWdi 1073 (1074)
+||.|.+|+||..
T Consensus 289 sgsyDksIRIf~~ 301 (433)
T KOG0268|consen 289 SGSYDKSIRIFPV 301 (433)
T ss_pred cccccceEEEeec
Confidence 9999999999964
No 128
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=2.9e-15 Score=154.72 Aligned_cols=236 Identities=14% Similarity=0.150 Sum_probs=186.6
Q ss_pred CCCCcEEEEEEe--CCEEEEEECCCcEEEEECCCCCee---EEEEeccCCCCEEEEEEcCC----CCEEEEEe-CCCeEE
Q 001455 792 KCSGAVTALIYY--KGLLCSGFSDGSIKMWDIKKQSAM---LVWDVKEHRKAVTSFSLFEP----GESLLSGS-ADKTIG 861 (1074)
Q Consensus 792 gH~~~VtsLafS--~~~LaSGs~DGtVrIWDl~t~~~~---~i~tl~gH~~~VtsLafSpd----g~~LaSGS-~DGtIr 861 (1074)
.|.+.|+|.+|+ +.++++|+.|.+|++.-.+...+. .-.++.-|.+.|..++|-.+ |..|++++ .|..|+
T Consensus 87 hhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy 166 (350)
T KOG0641|consen 87 HHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIY 166 (350)
T ss_pred ccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEE
Confidence 689999999999 679999999999999877654332 33566779999999999643 44577665 466777
Q ss_pred EEEccCCceEEEEEeccCCCeEE-EccCCCeEEEEecCCeEEEEeCC--Cceeeeec--------CCCeEEEEEe-CCEE
Q 001455 862 VWQMVQRKLELIEVIATKEPIRK-LDTYGKTIFASTQGHRMKVIDSS--RTLKDIYR--------SKGIKSMSVV-QGKI 929 (1074)
Q Consensus 862 IWDl~tg~~~~~~~~~h~~~V~s-~s~dg~~L~sgS~DgtI~VWDl~--~~l~~l~~--------~~~V~sLa~s-dgkL 929 (1074)
+-|..+|+.. ....+|...|.+ +++++-.+++|++|.+|++||++ .++.++.. ...|..+++. .|++
T Consensus 167 ~tdc~~g~~~-~a~sghtghilalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrl 245 (350)
T KOG0641|consen 167 ITDCGRGQGF-HALSGHTGHILALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRL 245 (350)
T ss_pred EeecCCCCcc-eeecCCcccEEEEEEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcce
Confidence 7787777643 356688888887 47899999999999999999987 33333322 2347788885 7775
Q ss_pred E-EEECCCcEEEEEccCCceeeeccccccccCCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCC----eEEEccCC
Q 001455 930 Y-IGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKP----QISIAPEK 1004 (1074)
Q Consensus 930 l-aGs~DgsI~IwDl~tg~~~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S~dDgtI~IWDl~t~~----~i~~l~gH 1004 (1074)
+ +|-.|....+||++.++.+. .+..|...|.++.|+|...|+++++ -|..|++-|++... .+.....|
T Consensus 246 l~sg~~dssc~lydirg~r~iq------~f~phsadir~vrfsp~a~yllt~s-yd~~ikltdlqgdla~el~~~vv~eh 318 (350)
T KOG0641|consen 246 LASGHADSSCMLYDIRGGRMIQ------RFHPHSADIRCVRFSPGAHYLLTCS-YDMKIKLTDLQGDLAHELPIMVVAEH 318 (350)
T ss_pred eeeccCCCceEEEEeeCCceee------eeCCCccceeEEEeCCCceEEEEec-ccceEEEeecccchhhcCceEEEEec
Confidence 5 58889999999999987653 4467899999999999999999988 56789999986532 34455678
Q ss_pred CCCeEEEEEecCCCEEEEEECCCcEEEEECC
Q 001455 1005 GTTIQAMAVVEDFIYLNYNSSASSLQIWLRG 1035 (1074)
Q Consensus 1005 ~~~VtsLafSPDG~~LaSGS~DGtIrIWDl~ 1035 (1074)
...+..+.|+|..--+++.+.|.++.+|-+.
T Consensus 319 kdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 319 KDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred cCceEEEEecCccceeeeccCcceEEEeccC
Confidence 8899999999999889999999999999753
No 129
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=4.5e-16 Score=174.99 Aligned_cols=259 Identities=18% Similarity=0.238 Sum_probs=187.2
Q ss_pred EEECC-CcEEEEECCCCCeeEEEEeccC-CCCEEEEEEcCCCCEEEEEeC-CCeEEEEEccCCceEEEEEeccCCCeEEE
Q 001455 809 SGFSD-GSIKMWDIKKQSAMLVWDVKEH-RKAVTSFSLFEPGESLLSGSA-DKTIGVWQMVQRKLELIEVIATKEPIRKL 885 (1074)
Q Consensus 809 SGs~D-GtVrIWDl~t~~~~~i~tl~gH-~~~VtsLafSpdg~~LaSGS~-DGtIrIWDl~tg~~~~~~~~~h~~~V~s~ 885 (1074)
+++.| .++.+||++++.. ..++++. ...-.++.. -.+.+++++.. -..+.+|.+....... ...--.++|.++
T Consensus 12 ssS~d~~~~~~~dl~TGt~--~~~ykg~~~a~~~sl~~-l~~~yllsaq~~rp~l~vw~i~k~~~~~-q~~v~Pg~v~al 87 (476)
T KOG0646|consen 12 SSSFDPINCIVWDLRTGTS--LLQYKGSYLAQAASLTA-LNNEYLLSAQLKRPLLHVWEILKKDQVV-QYIVLPGPVHAL 87 (476)
T ss_pred ccCCCCcceeEEecCCCce--eEEecCcccccchhhhh-hchhheeeecccCccccccccCchhhhh-hhcccccceeee
Confidence 34444 4599999999854 5666554 111111211 12356665543 4468899986543222 233345667776
Q ss_pred --ccCCCeEEEEecCCeEEEEeCC-Cc-eeeeec-CCCeEEEEEe-CCE-EEEEECCCcEEEEEccCCc---eeeecccc
Q 001455 886 --DTYGKTIFASTQGHRMKVIDSS-RT-LKDIYR-SKGIKSMSVV-QGK-IYIGCMDSSIQELAVSNNV---EREIKAPF 955 (1074)
Q Consensus 886 --s~dg~~L~sgS~DgtI~VWDl~-~~-l~~l~~-~~~V~sLa~s-dgk-LlaGs~DgsI~IwDl~tg~---~~~i~~~~ 955 (1074)
++.|.+++.|+-.|.+++|.+. +. +..+.. -..|+|+.|+ ||. +++|+.||.|.+|++..-- ......|.
T Consensus 88 ~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~ 167 (476)
T KOG0646|consen 88 ASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPL 167 (476)
T ss_pred ecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccce
Confidence 5788899988899999999998 33 333333 3569999998 665 8889999999999885411 11133566
Q ss_pred ccccCCCCCeEEEEEcCCc--eEEEEEecCCCeEEEEECCCCCeEEEccCCCCCeEEEEEecCCCEEEEEECCCcEEEEE
Q 001455 956 KSWRLQSKPINSLVVYKDW--LYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWL 1033 (1074)
Q Consensus 956 r~~~~h~~~I~sL~~spd~--i~las~S~dDgtI~IWDl~t~~~i~~l~gH~~~VtsLafSPDG~~LaSGS~DGtIrIWD 1033 (1074)
+.|..|.-+|+.+...+++ .++++.+ .|.++++||+..+.++..+ .....+.+++.+|-++.+..|+.+|.|.+.+
T Consensus 168 ~~f~~HtlsITDl~ig~Gg~~~rl~TaS-~D~t~k~wdlS~g~LLlti-~fp~si~av~lDpae~~~yiGt~~G~I~~~~ 245 (476)
T KOG0646|consen 168 HIFSDHTLSITDLQIGSGGTNARLYTAS-EDRTIKLWDLSLGVLLLTI-TFPSSIKAVALDPAERVVYIGTEEGKIFQNL 245 (476)
T ss_pred eeeccCcceeEEEEecCCCccceEEEec-CCceEEEEEeccceeeEEE-ecCCcceeEEEcccccEEEecCCcceEEeee
Confidence 8899999999999998764 3556555 8999999999999877666 3456799999999999999999999999987
Q ss_pred CCC----------------CcEEEEEeCC-C--CeEEEE--EcCCEEEEEECCCcEEEEec
Q 001455 1034 RGT----------------QQKVGRISAG-S--KITSLL--TANDIVLCGTETGLIKGWIP 1073 (1074)
Q Consensus 1034 l~t----------------g~~l~tL~~h-s--~VtsLa--~dg~~LaSGs~DG~IrIWdi 1073 (1074)
+.+ +..+..+.+| + .|+|++ +||..|++|+.||+|+|||+
T Consensus 246 ~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi 306 (476)
T KOG0646|consen 246 LFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDI 306 (476)
T ss_pred hhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEec
Confidence 543 2345667777 3 599966 56999999999999999997
No 130
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.70 E-value=8.3e-15 Score=165.50 Aligned_cols=265 Identities=17% Similarity=0.209 Sum_probs=203.1
Q ss_pred CCcEEEEEEe-CCEEEEEECCCcEEEEECCCCCeeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEccCCceEE
Q 001455 794 SGAVTALIYY-KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLEL 872 (1074)
Q Consensus 794 ~~~VtsLafS-~~~LaSGs~DGtVrIWDl~t~~~~~i~tl~gH~~~VtsLafSpdg~~LaSGS~DGtIrIWDl~tg~~~~ 872 (1074)
...|.|++|. ++-++||.++|.|.||+..+.+. .+....|.+.|.+++.-.+|. |+||+.|+.|..||-.-.+...
T Consensus 246 kk~Vl~v~F~engdviTgDS~G~i~Iw~~~~~~~--~k~~~aH~ggv~~L~~lr~Gt-llSGgKDRki~~Wd~~y~k~r~ 322 (626)
T KOG2106|consen 246 KKFVLCVTFLENGDVITGDSGGNILIWSKGTNRI--SKQVHAHDGGVFSLCMLRDGT-LLSGGKDRKIILWDDNYRKLRE 322 (626)
T ss_pred ceEEEEEEEcCCCCEEeecCCceEEEEeCCCceE--EeEeeecCCceEEEEEecCcc-EeecCccceEEecccccccccc
Confidence 4789999999 88999999999999999976543 444459999999999999987 5569999999999944444445
Q ss_pred EEEeccCCCeEEEccCCCeEEEEecCCeEEEEeCCCce--eeeecCCCeEEEEEe--CCEEEEEECCCcEEEEEccCCce
Q 001455 873 IEVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSSRTL--KDIYRSKGIKSMSVV--QGKIYIGCMDSSIQELAVSNNVE 948 (1074)
Q Consensus 873 ~~~~~h~~~V~s~s~dg~~L~sgS~DgtI~VWDl~~~l--~~l~~~~~V~sLa~s--dgkLlaGs~DgsI~IwDl~tg~~ 948 (1074)
...+....+|..+.+.+.-++.|+..+.|..=.+++.. ...-+......++.. +.++++++.|+.+++|+ ..+.
T Consensus 323 ~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~ 400 (626)
T KOG2106|consen 323 TELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKL 400 (626)
T ss_pred ccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCce
Confidence 56667778899887766668888888877766666332 223334567777763 66799999999999999 2222
Q ss_pred eeeccccccccCCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEccCCCCCeEEEEEecCCCEEEEEECCCc
Q 001455 949 REIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASS 1028 (1074)
Q Consensus 949 ~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S~dDgtI~IWDl~t~~~i~~l~gH~~~VtsLafSPDG~~LaSGS~DGt 1028 (1074)
.-. ..-..+..++.|||.+.. +.+. ..|...+.|..+...+..-.. ..+++.+.|+|+|.+||.|+.|+.
T Consensus 401 ~wt-------~~~~d~~~~~~fhpsg~v-a~Gt-~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~ 470 (626)
T KOG2106|consen 401 EWT-------KIIEDPAECADFHPSGVV-AVGT-ATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNH 470 (626)
T ss_pred eEE-------EEecCceeEeeccCcceE-EEee-ccceEEEEecccceeEEEEec-CCceEEEEEcCCCCEEEEecCCCe
Confidence 111 112678999999999944 4344 457889999998777766555 889999999999999999999999
Q ss_pred EEEEECCC-CcEEEEEeCC--CCeEEEEEc--CCEEEEEECCCcEEEEec
Q 001455 1029 LQIWLRGT-QQKVGRISAG--SKITSLLTA--NDIVLCGTETGLIKGWIP 1073 (1074)
Q Consensus 1029 IrIWDl~t-g~~l~tL~~h--s~VtsLa~d--g~~LaSGs~DG~IrIWdi 1073 (1074)
|+||.+.. |........+ .+|+.+.|+ ++++.+-+.|-.|-.|.+
T Consensus 471 iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~ 520 (626)
T KOG2106|consen 471 IYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKP 520 (626)
T ss_pred EEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEcc
Confidence 99999654 4443333222 569998876 779999999999999965
No 131
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.70 E-value=1e-15 Score=168.17 Aligned_cols=241 Identities=12% Similarity=0.163 Sum_probs=176.4
Q ss_pred CCCCcEEEEEEe--CC--EEEEEECCCcEEEEECCC--------------CCeeEEEEeccCCCCEEEEEEcCCCCE-EE
Q 001455 792 KCSGAVTALIYY--KG--LLCSGFSDGSIKMWDIKK--------------QSAMLVWDVKEHRKAVTSFSLFEPGES-LL 852 (1074)
Q Consensus 792 gH~~~VtsLafS--~~--~LaSGs~DGtVrIWDl~t--------------~~~~~i~tl~gH~~~VtsLafSpdg~~-La 852 (1074)
+|.+.|+.+..+ ++ +.++=+..|.|.|||+.. .+..+++++.+|.+.=..++|||-..- |+
T Consensus 149 ~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~Ll 228 (440)
T KOG0302|consen 149 PHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLL 228 (440)
T ss_pred ccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccc
Confidence 677777777776 33 577778899999999842 123478899999999999999994433 88
Q ss_pred EEeCCCeEEEEEccCCceEEEEEeccCCCeEEEccCCCeEEEEecCCeEEEEeCCCceeeeecCCCeEEEEEe---CCEE
Q 001455 853 SGSADKTIGVWQMVQRKLELIEVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSSRTLKDIYRSKGIKSMSVV---QGKI 929 (1074)
Q Consensus 853 SGS~DGtIrIWDl~tg~~~~~~~~~h~~~V~s~s~dg~~L~sgS~DgtI~VWDl~~~l~~l~~~~~V~sLa~s---dgkL 929 (1074)
||..-+.|++|...+|....-.. ....+...|-.++|+ ++.+
T Consensus 229 sGDc~~~I~lw~~~~g~W~vd~~-----------------------------------Pf~gH~~SVEDLqWSptE~~vf 273 (440)
T KOG0302|consen 229 SGDCVKGIHLWEPSTGSWKVDQR-----------------------------------PFTGHTKSVEDLQWSPTEDGVF 273 (440)
T ss_pred cCccccceEeeeeccCceeecCc-----------------------------------cccccccchhhhccCCccCceE
Confidence 99999999999988876422100 000123446666774 4557
Q ss_pred EEEECCCcEEEEEccCCceeeeccccccccCCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCC---CCeEEEccCCCC
Q 001455 930 YIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHR---KPQISIAPEKGT 1006 (1074)
Q Consensus 930 laGs~DgsI~IwDl~tg~~~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S~dDgtI~IWDl~t---~~~i~~l~gH~~ 1006 (1074)
++|+.||+|+|||++.+..... -....|...|+.+.|+....++++++ +||+++|||+++ +..+..+.-|..
T Consensus 274 aScS~DgsIrIWDiRs~~~~~~----~~~kAh~sDVNVISWnr~~~lLasG~-DdGt~~iwDLR~~~~~~pVA~fk~Hk~ 348 (440)
T KOG0302|consen 274 ASCSCDGSIRIWDIRSGPKKAA----VSTKAHNSDVNVISWNRREPLLASGG-DDGTLSIWDLRQFKSGQPVATFKYHKA 348 (440)
T ss_pred EeeecCceEEEEEecCCCccce----eEeeccCCceeeEEccCCcceeeecC-CCceEEEEEhhhccCCCcceeEEeccC
Confidence 7788888999999888643222 12267788999999998888777666 999999999754 567889999999
Q ss_pred CeEEEEEec-CCCEEEEEECCCcEEEEECCCC-------------------cEEEEEeCCCCeEEEEEc---CCEEEEEE
Q 001455 1007 TIQAMAVVE-DFIYLNYNSSASSLQIWLRGTQ-------------------QKVGRISAGSKITSLLTA---NDIVLCGT 1063 (1074)
Q Consensus 1007 ~VtsLafSP-DG~~LaSGS~DGtIrIWDl~tg-------------------~~l~tL~~hs~VtsLa~d---g~~LaSGs 1063 (1074)
+|+++.|+| +...|+++|.|.+|.|||+..- +.++..++...|..+.|+ +.++++.+
T Consensus 349 pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa 428 (440)
T KOG0302|consen 349 PITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTA 428 (440)
T ss_pred CeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEec
Confidence 999999998 4567888889999999996421 122222233347778888 55999999
Q ss_pred CCCcEEEEec
Q 001455 1064 ETGLIKGWIP 1073 (1074)
Q Consensus 1064 ~DG~IrIWdi 1073 (1074)
.|| +.||.+
T Consensus 429 ~dG-fnVfkt 437 (440)
T KOG0302|consen 429 IDG-FNVFKT 437 (440)
T ss_pred ccc-eeEEEe
Confidence 999 677764
No 132
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.69 E-value=3.1e-16 Score=179.61 Aligned_cols=261 Identities=13% Similarity=0.164 Sum_probs=195.1
Q ss_pred cceeeEEEEeecCCCCCcEEEEEEe--CCEEEEEECCCcEEEEECCC------CCeeEEEEeccCCCCEEEEEEcCCCCE
Q 001455 779 ISCVHTQILEASHKCSGAVTALIYY--KGLLCSGFSDGSIKMWDIKK------QSAMLVWDVKEHRKAVTSFSLFEPGES 850 (1074)
Q Consensus 779 ~~~~~tl~le~~~gH~~~VtsLafS--~~~LaSGs~DGtVrIWDl~t------~~~~~i~tl~gH~~~VtsLafSpdg~~ 850 (1074)
|....++. .|.+.|+.+.|. ...|++|+.||++++|+++. ...+++.+|.+|.++|.|+++.+++..
T Consensus 284 w~ik~tl~-----s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~ 358 (577)
T KOG0642|consen 284 WNIKFTLR-----SHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEH 358 (577)
T ss_pred cceeeeee-----cchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceE
Confidence 44444544 789999999999 56899999999999999932 233589999999999999999999999
Q ss_pred EEEEeCCCeEEEEEccCC---------ceEEEEEeccCCCeEEE--ccCCCeEEEEecCCeEEEEeCCCceeeeec----
Q 001455 851 LLSGSADKTIGVWQMVQR---------KLELIEVIATKEPIRKL--DTYGKTIFASTQGHRMKVIDSSRTLKDIYR---- 915 (1074)
Q Consensus 851 LaSGS~DGtIrIWDl~tg---------~~~~~~~~~h~~~V~s~--s~dg~~L~sgS~DgtI~VWDl~~~l~~l~~---- 915 (1074)
+++||.||+|+.|++... ........+|.+.|+.+ +...+.|++++.||+++.|+..+.....++
T Consensus 359 ~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e 438 (577)
T KOG0642|consen 359 CYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKE 438 (577)
T ss_pred EEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCccccCCccc
Confidence 999999999999965421 12334566899999764 566778999999999999998743332221
Q ss_pred CCCeEEEEEeCCE---EEEEECCCcEEEEEccCCceeeecccccccc--CCCCCeEEEEEcCCceEEEEEecCCCeEEEE
Q 001455 916 SKGIKSMSVVQGK---IYIGCMDSSIQELAVSNNVEREIKAPFKSWR--LQSKPINSLVVYKDWLYSASSSVEGSNIKEW 990 (1074)
Q Consensus 916 ~~~V~sLa~sdgk---LlaGs~DgsI~IwDl~tg~~~~i~~~~r~~~--~h~~~I~sL~~spd~i~las~S~dDgtI~IW 990 (1074)
++.-.++.+.+.+ .++...-+.-.+++...+....+... .... .....+.-+..||..-+.++.. +|+.|+++
T Consensus 439 ~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s-~~~~~~~~~~~in~vVs~~~~~~~~~~h-ed~~Ir~~ 516 (577)
T KOG0642|consen 439 HGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFES-SASPGPRRYPQINKVVSHPTADITFTAH-EDRSIRFF 516 (577)
T ss_pred cCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccc-cCCCcccccCccceEEecCCCCeeEecc-cCCceecc
Confidence 3334566664333 33333334444445544333222211 1111 1134577788899888888766 88999999
Q ss_pred ECCCCCeEEEccCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCcEEEEEeCC
Q 001455 991 RRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAG 1046 (1074)
Q Consensus 991 Dl~t~~~i~~l~gH~~~VtsLafSPDG~~LaSGS~DGtIrIWDl~tg~~l~tL~~h 1046 (1074)
|..++.++.....|...++++++.|+|.+|++|+.||.|++|......++.....|
T Consensus 517 dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~ 572 (577)
T KOG0642|consen 517 DNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAH 572 (577)
T ss_pred cccccccchheeeccceecceeecCCCceEEeecCCceeehhhccchheeeccccc
Confidence 99999999999999999999999999999999999999999999888887766655
No 133
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.68 E-value=1.6e-15 Score=163.37 Aligned_cols=223 Identities=16% Similarity=0.185 Sum_probs=153.7
Q ss_pred EEECCCCCee---EEEEeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEccCCce-----EEEEEeccCCCeEEEccCC
Q 001455 818 MWDIKKQSAM---LVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKL-----ELIEVIATKEPIRKLDTYG 889 (1074)
Q Consensus 818 IWDl~t~~~~---~i~tl~gH~~~VtsLafSpdg~~LaSGS~DGtIrIWDl~tg~~-----~~~~~~~h~~~V~s~s~dg 889 (1074)
-|+.+..+.. ....+++|.+.|++++|+.||++|+|++.|++|++|+++.-.. ....+.........|+|+-
T Consensus 65 ~~k~~q~~f~Hpl~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc 144 (420)
T KOG2096|consen 65 QWKAKQPTFVHPLNVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDC 144 (420)
T ss_pred hhcccCCCcccchhhhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCc
Confidence 4555544321 2345789999999999999999999999999999999976321 1111111111223466766
Q ss_pred CeEE-EEecCCeEEEEeCCCceeeeecCCCeEEEEEeCCEEEEEECCCcEEEEEccCCceeeeccccccccCCCCCeEEE
Q 001455 890 KTIF-ASTQGHRMKVIDSSRTLKDIYRSKGIKSMSVVQGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSL 968 (1074)
Q Consensus 890 ~~L~-sgS~DgtI~VWDl~~~l~~l~~~~~V~sLa~sdgkLlaGs~DgsI~IwDl~tg~~~~i~~~~r~~~~h~~~I~sL 968 (1074)
+-++ ++-.+.++++|.+.+... +... -...-||-. ..-..|..++..+
T Consensus 145 ~s~vv~~~~g~~l~vyk~~K~~d---G~~~-----------------~~~v~~D~~-----------~f~~kh~v~~i~i 193 (420)
T KOG2096|consen 145 KSVVVSVKRGNKLCVYKLVKKTD---GSGS-----------------HHFVHIDNL-----------EFERKHQVDIINI 193 (420)
T ss_pred ceEEEEEccCCEEEEEEeeeccc---CCCC-----------------ccccccccc-----------ccchhcccceEEE
Confidence 6443 334555677776542111 0000 001112200 0113456677777
Q ss_pred EEcCCceEEEEEecCCCeEEEEECCCCCeEEEccCCCCCeEEEEEecCCCEEEEEECCCcEEEEEC---CCCc-----EE
Q 001455 969 VVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLR---GTQQ-----KV 1040 (1074)
Q Consensus 969 ~~spd~i~las~S~dDgtI~IWDl~t~~~i~~l~gH~~~VtsLafSPDG~~LaSGS~DGtIrIWDl---~tg~-----~l 1040 (1074)
-...++.++.+.+ .|..|.+|+.. |+.+..+......-+..++||+|+++++++..-.|++|.. ++|+ .+
T Consensus 194 GiA~~~k~imsas-~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rv 271 (420)
T KOG2096|consen 194 GIAGNAKYIMSAS-LDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRV 271 (420)
T ss_pred eecCCceEEEEec-CCCcEEEEecC-CceeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhh
Confidence 7888899999887 78899999998 7778877777777778899999999999999999999983 3333 36
Q ss_pred EEEeCC-CCeEEEEEcC--CEEEEEECCCcEEEEec
Q 001455 1041 GRISAG-SKITSLLTAN--DIVLCGTETGLIKGWIP 1073 (1074)
Q Consensus 1041 ~tL~~h-s~VtsLa~dg--~~LaSGs~DG~IrIWdi 1073 (1074)
..+++| +.|.+++|++ ..+++.+.||+++|||.
T Consensus 272 f~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdt 307 (420)
T KOG2096|consen 272 FSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDT 307 (420)
T ss_pred heeccchhheeeeeeCCCcceeEEEecCCcEEEeec
Confidence 788899 4599998874 49999999999999985
No 134
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.68 E-value=9.4e-16 Score=177.83 Aligned_cols=239 Identities=12% Similarity=0.123 Sum_probs=191.3
Q ss_pred CCCCcEEEEEEe--CCEEEEEECCCcEEEEECCCCCeeEEEEeccCCCCEEEEEEcC---CCCEEEEEeCCCeEEEEEcc
Q 001455 792 KCSGAVTALIYY--KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFE---PGESLLSGSADKTIGVWQMV 866 (1074)
Q Consensus 792 gH~~~VtsLafS--~~~LaSGs~DGtVrIWDl~t~~~~~i~tl~gH~~~VtsLafSp---dg~~LaSGS~DGtIrIWDl~ 866 (1074)
+..-.|.+++.+ +.+||+|..-|+++||++...+. ...+..|...|.|+.|+. ..+.|++++.|+-|.|+|+.
T Consensus 457 d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~--~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~ 534 (1080)
T KOG1408|consen 457 DSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEY--TCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVK 534 (1080)
T ss_pred CcccceEEEEECCCcceecccCccCceEEEEehhhhh--hhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecc
Confidence 346789999999 45899999999999999997654 566789999999999984 23559999999999999997
Q ss_pred CCceEEEEEeccCCCeEEE--ccCC--CeEEEEecCCeEEEEeCC--Cceeeee------cCCCeEEEEEe--CCEEEEE
Q 001455 867 QRKLELIEVIATKEPIRKL--DTYG--KTIFASTQGHRMKVIDSS--RTLKDIY------RSKGIKSMSVV--QGKIYIG 932 (1074)
Q Consensus 867 tg~~~~~~~~~h~~~V~s~--s~dg--~~L~sgS~DgtI~VWDl~--~~l~~l~------~~~~V~sLa~s--dgkLlaG 932 (1074)
..-.......+|...|+++ ...| ..+++++.|..|.+--.. .....+. .+..+..|++. .+.++++
T Consensus 535 rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~ 614 (1080)
T KOG1408|consen 535 RNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTV 614 (1080)
T ss_pred cccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEE
Confidence 6554555667899999874 4444 578888888876543322 1111221 13347788885 4457889
Q ss_pred ECCCcEEEEEccCCceeeeccccccccCCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEccCCCCCeEEEE
Q 001455 933 CMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMA 1012 (1074)
Q Consensus 933 s~DgsI~IwDl~tg~~~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S~dDgtI~IWDl~t~~~i~~l~gH~~~VtsLa 1012 (1074)
|.|..|+|||+.+|+....+... ..|.+..-.+...|.++|+++.. .|+++.++|..+|+++..+.||...|+.+.
T Consensus 615 cQDrnirif~i~sgKq~k~FKgs---~~~eG~lIKv~lDPSgiY~atSc-sdktl~~~Df~sgEcvA~m~GHsE~VTG~k 690 (1080)
T KOG1408|consen 615 CQDRNIRIFDIESGKQVKSFKGS---RDHEGDLIKVILDPSGIYLATSC-SDKTLCFVDFVSGECVAQMTGHSEAVTGVK 690 (1080)
T ss_pred ecccceEEEeccccceeeeeccc---ccCCCceEEEEECCCccEEEEee-cCCceEEEEeccchhhhhhcCcchheeeee
Confidence 99999999999999887665433 45556677788999999999765 789999999999999999999999999999
Q ss_pred EecCCCEEEEEECCCcEEEEECCC
Q 001455 1013 VVEDFIYLNYNSSASSLQIWLRGT 1036 (1074)
Q Consensus 1013 fSPDG~~LaSGS~DGtIrIWDl~t 1036 (1074)
|.+|.+.|++.+.||.|.||.+..
T Consensus 691 F~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 691 FLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred ecccchhheeecCCceEEEEECch
Confidence 999999999999999999998654
No 135
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.67 E-value=9.2e-17 Score=187.40 Aligned_cols=226 Identities=18% Similarity=0.242 Sum_probs=189.4
Q ss_pred CCCCcEEEEEEe--CCEEEEEECCCcEEEEECCCCCeeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEccCCc
Q 001455 792 KCSGAVTALIYY--KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRK 869 (1074)
Q Consensus 792 gH~~~VtsLafS--~~~LaSGs~DGtVrIWDl~t~~~~~i~tl~gH~~~VtsLafSpdg~~LaSGS~DGtIrIWDl~tg~ 869 (1074)
.|...|.++..- ...+++|+.|..+-+|.+..... +..+.+|.++|.++.|+++...|++|+.+|+|++||+..++
T Consensus 26 ~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~--i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk 103 (825)
T KOG0267|consen 26 AHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNA--ITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAK 103 (825)
T ss_pred hhhhhhceeeeeccceeeccCCCceeeccccccCCch--hheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhh
Confidence 577788887765 56799999999999999987654 56689999999999999999999999999999999999887
Q ss_pred eEEEEEeccCCCeEE--EccCCCeEEEEecCCeEEEEeCC--CceeeeecC-CCeEEEEEe-CCEEEE-EECCCcEEEEE
Q 001455 870 LELIEVIATKEPIRK--LDTYGKTIFASTQGHRMKVIDSS--RTLKDIYRS-KGIKSMSVV-QGKIYI-GCMDSSIQELA 942 (1074)
Q Consensus 870 ~~~~~~~~h~~~V~s--~s~dg~~L~sgS~DgtI~VWDl~--~~l~~l~~~-~~V~sLa~s-dgkLla-Gs~DgsI~IwD 942 (1074)
... ...+|...+.+ |.|.+.+.+.|+.|+.+++||.+ ++...+..+ ..|.++.|+ +|++++ |+.|..+++||
T Consensus 104 ~vr-tLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d 182 (825)
T KOG0267|consen 104 IVR-TLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWD 182 (825)
T ss_pred hhh-hhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeec
Confidence 444 45567776665 67888899999999999999998 556655543 347788886 887555 88889999999
Q ss_pred ccCCceeeeccccccccCCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEccCCCCCeEEEEEecCCCEEEE
Q 001455 943 VSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNY 1022 (1074)
Q Consensus 943 l~tg~~~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S~dDgtI~IWDl~t~~~i~~l~gH~~~VtsLafSPDG~~LaS 1022 (1074)
...|+... .|..|...+.++.|||....+..++ .|+++++||+++...+.........|.+..|+|+|..+++
T Consensus 183 ~~agk~~~------ef~~~e~~v~sle~hp~e~Lla~Gs-~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~ 255 (825)
T KOG0267|consen 183 LTAGKLSK------EFKSHEGKVQSLEFHPLEVLLAPGS-SDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLS 255 (825)
T ss_pred cccccccc------ccccccccccccccCchhhhhccCC-CCceeeeeccceeEEeeccCCccCCceeeeecCCceeeec
Confidence 99877643 4567889999999999998888777 7899999999998888888777889999999999999999
Q ss_pred EECCC
Q 001455 1023 NSSAS 1027 (1074)
Q Consensus 1023 GS~DG 1027 (1074)
|..+.
T Consensus 256 G~q~s 260 (825)
T KOG0267|consen 256 GEQIS 260 (825)
T ss_pred Cchhh
Confidence 87553
No 136
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.67 E-value=1.7e-15 Score=170.19 Aligned_cols=199 Identities=9% Similarity=0.103 Sum_probs=157.2
Q ss_pred EeccCCCeEE---EccCCCeEEEEecCCeEEEEeCCCce------------eeeecCCC-eEEEEEe---CCEEEEEECC
Q 001455 875 VIATKEPIRK---LDTYGKTIFASTQGHRMKVIDSSRTL------------KDIYRSKG-IKSMSVV---QGKIYIGCMD 935 (1074)
Q Consensus 875 ~~~h~~~V~s---~s~dg~~L~sgS~DgtI~VWDl~~~l------------~~l~~~~~-V~sLa~s---dgkLlaGs~D 935 (1074)
...|.+.|.. +-.+...+++.+.++.|.|||..+.. ..+.++.. -.+++|+ .|.+++|+.|
T Consensus 120 ~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d 199 (422)
T KOG0264|consen 120 KINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDD 199 (422)
T ss_pred eccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCC
Confidence 3446666654 34455677888899999999976211 12333333 6678886 7789999999
Q ss_pred CcEEEEEccCCce-eeeccccccccCCCCCeEEEEEcCCceEEEEEecCCCeEEEEECC--CCCeEEEccCCCCCeEEEE
Q 001455 936 SSIQELAVSNNVE-REIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRH--RKPQISIAPEKGTTIQAMA 1012 (1074)
Q Consensus 936 gsI~IwDl~tg~~-~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S~dDgtI~IWDl~--t~~~i~~l~gH~~~VtsLa 1012 (1074)
+.|.+||+..... .....+...+.+|...|..++||+-...++++..+|+.+.|||.+ +.+......+|.+.|++++
T Consensus 200 ~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~ 279 (422)
T KOG0264|consen 200 HTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVA 279 (422)
T ss_pred CcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEE
Confidence 9999999987554 233445567789999999999998776666666699999999998 5566677789999999999
Q ss_pred Eec-CCCEEEEEECCCcEEEEECCCCc-EEEEEeCCCC-eEEEEEcCC---EEEEEECCCcEEEEec
Q 001455 1013 VVE-DFIYLNYNSSASSLQIWLRGTQQ-KVGRISAGSK-ITSLLTAND---IVLCGTETGLIKGWIP 1073 (1074)
Q Consensus 1013 fSP-DG~~LaSGS~DGtIrIWDl~tg~-~l~tL~~hs~-VtsLa~dg~---~LaSGs~DG~IrIWdi 1073 (1074)
|+| ++..|||||.|++|++||+++.. ++.++.+|.. |.++.|++. .|+|++.||.+.|||+
T Consensus 280 fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDl 346 (422)
T KOG0264|consen 280 FNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDL 346 (422)
T ss_pred eCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEec
Confidence 999 66778999999999999987754 5899999954 999999854 9999999999999996
No 137
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.67 E-value=2.3e-15 Score=173.99 Aligned_cols=242 Identities=15% Similarity=0.122 Sum_probs=172.0
Q ss_pred CCCCCcEEEEEEe-C-CEEEEEECCCcEEEEECCCCCeeEEEEeccCCCCEEEEEEcCCCCE-EEEEeCCCeEEEEEccC
Q 001455 791 HKCSGAVTALIYY-K-GLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGES-LLSGSADKTIGVWQMVQ 867 (1074)
Q Consensus 791 ~gH~~~VtsLafS-~-~~LaSGs~DGtVrIWDl~t~~~~~i~tl~gH~~~VtsLafSpdg~~-LaSGS~DGtIrIWDl~t 867 (1074)
..|.+.|..+.|- + ..|++++.|.++++||+++.+..-...+.||.+.|.+++|.|+... +++|+.||.|.|||++-
T Consensus 97 ~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~ 176 (720)
T KOG0321|consen 97 LAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRC 176 (720)
T ss_pred ccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEec
Confidence 4799999999999 3 3799999999999999998866444457899999999999998876 88999999999999864
Q ss_pred CceEE------EEEe--------------------ccCCCeE----E-EccCCCeEEEEec-CCeEEEEeCCCceeee--
Q 001455 868 RKLEL------IEVI--------------------ATKEPIR----K-LDTYGKTIFASTQ-GHRMKVIDSSRTLKDI-- 913 (1074)
Q Consensus 868 g~~~~------~~~~--------------------~h~~~V~----s-~s~dg~~L~sgS~-DgtI~VWDl~~~l~~l-- 913 (1074)
..... .... .+...|. . +..|...|++++. |+.|+|||+++.....
T Consensus 177 n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ 256 (720)
T KOG0321|consen 177 NGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQ 256 (720)
T ss_pred cchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeeccccccccc
Confidence 32100 0000 1111222 2 3457778888876 9999999998322111
Q ss_pred ---------ec---CCCeEEEEEe--CCEEEEEECCCcEEEEEccCCceeeeccccccccCCCC--CeEEEEEcCCceEE
Q 001455 914 ---------YR---SKGIKSMSVV--QGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSK--PINSLVVYKDWLYS 977 (1074)
Q Consensus 914 ---------~~---~~~V~sLa~s--dgkLlaGs~DgsI~IwDl~tg~~~~i~~~~r~~~~h~~--~I~sL~~spd~i~l 977 (1074)
.+ ..++.++... ..++++.|.|+.|++|++.+-.... ...+.++.. .-..-..+|++.++
T Consensus 257 ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP----~~~~sg~~~~sf~vks~lSpd~~~l 332 (720)
T KOG0321|consen 257 EPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISP----VAEFSGKLNSSFYVKSELSPDDCSL 332 (720)
T ss_pred CCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCc----hhhccCcccceeeeeeecCCCCceE
Confidence 11 1235566664 4568899999999999998744322 122222211 11122346899999
Q ss_pred EEEecCCCeEEEEECCCCC-eEEEccCCCCCeEEEEEecC-CCEEEEEECCCcEEEEECCCC
Q 001455 978 ASSSVEGSNIKEWRRHRKP-QISIAPEKGTTIQAMAVVED-FIYLNYNSSASSLQIWLRGTQ 1037 (1074)
Q Consensus 978 as~S~dDgtI~IWDl~t~~-~i~~l~gH~~~VtsLafSPD-G~~LaSGS~DGtIrIWDl~tg 1037 (1074)
++++ .|....+|.+.+.. ....+.||.-.|++++|.|. -.-++++++|.+++||++..+
T Consensus 333 ~SgS-sd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 333 LSGS-SDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred eccC-CCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence 9887 67889999987654 35567799999999999762 234667799999999997553
No 138
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.65 E-value=1.1e-13 Score=156.59 Aligned_cols=265 Identities=12% Similarity=0.179 Sum_probs=198.7
Q ss_pred CCcEEEEEEe--C-CEEEEEECCCcEEEEECCCCCee-EEEEeccC-CCCEEEEEEcCCCCEEEEEeCCCeEEEEEccCC
Q 001455 794 SGAVTALIYY--K-GLLCSGFSDGSIKMWDIKKQSAM-LVWDVKEH-RKAVTSFSLFEPGESLLSGSADKTIGVWQMVQR 868 (1074)
Q Consensus 794 ~~~VtsLafS--~-~~LaSGs~DGtVrIWDl~t~~~~-~i~tl~gH-~~~VtsLafSpdg~~LaSGS~DGtIrIWDl~tg 868 (1074)
+..|....|+ + ++++++ ..|.+..|+.+++... ....++.+ +.-|.|++|.++|+ ++||..+|+|.||+..+.
T Consensus 200 ne~v~~a~FHPtd~nliit~-Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~ 277 (626)
T KOG2106|consen 200 NEVVFLATFHPTDPNLIITC-GKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGTN 277 (626)
T ss_pred cceEEEEEeccCCCcEEEEe-CCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCc
Confidence 5678888998 3 455555 4578999999887543 22233333 36799999999997 779999999999999877
Q ss_pred ceEEEEEeccCCCeEEEc-cCCCeEEEEecCCeEEEEeCC-Cceeee---ecCCCeEEEEEeCCEEEEEECCCcEEEEEc
Q 001455 869 KLELIEVIATKEPIRKLD-TYGKTIFASTQGHRMKVIDSS-RTLKDI---YRSKGIKSMSVVQGKIYIGCMDSSIQELAV 943 (1074)
Q Consensus 869 ~~~~~~~~~h~~~V~s~s-~dg~~L~sgS~DgtI~VWDl~-~~l~~l---~~~~~V~sLa~sdgkLlaGs~DgsI~IwDl 943 (1074)
+...... .|...|.++. .....+++|+.|..|..||-. +..+.. ...+.|+.++-..+.++.|...+.|-.=.+
T Consensus 278 ~~~k~~~-aH~ggv~~L~~lr~GtllSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~ 356 (626)
T KOG2106|consen 278 RISKQVH-AHDGGVFSLCMLRDGTLLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTL 356 (626)
T ss_pred eEEeEee-ecCCceEEEEEecCccEeecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeee
Confidence 7655554 8999999865 233356669999999999944 222211 124557777765445888998888887777
Q ss_pred cCCceeeeccccccccCCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEccCCCCCeEEEEEecCCCEEEEE
Q 001455 944 SNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYN 1023 (1074)
Q Consensus 944 ~tg~~~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S~dDgtI~IWDl~t~~~i~~l~gH~~~VtsLafSPDG~~LaSG 1023 (1074)
.++..... .+|......++.||+...+++++ .|+.+++|+ ........ .-..++.++.|+|.| .+|.|
T Consensus 357 ~~~f~~~v-------~gh~delwgla~hps~~q~~T~g-qdk~v~lW~-~~k~~wt~--~~~d~~~~~~fhpsg-~va~G 424 (626)
T KOG2106|consen 357 ENGFTLTV-------QGHGDELWGLATHPSKNQLLTCG-QDKHVRLWN-DHKLEWTK--IIEDPAECADFHPSG-VVAVG 424 (626)
T ss_pred cCCceEEE-------EecccceeeEEcCCChhheeecc-CcceEEEcc-CCceeEEE--EecCceeEeeccCcc-eEEEe
Confidence 77655443 57788999999999988888776 889999999 22222222 245678899999999 99999
Q ss_pred ECCCcEEEEECCCCcEEEEEeCCCCeEEEEE--cCCEEEEEECCCcEEEEec
Q 001455 1024 SSASSLQIWLRGTQQKVGRISAGSKITSLLT--ANDIVLCGTETGLIKGWIP 1073 (1074)
Q Consensus 1024 S~DGtIrIWDl~tg~~l~tL~~hs~VtsLa~--dg~~LaSGs~DG~IrIWdi 1073 (1074)
...|...+.|.++...+..-....+++++.| +|.+||.|+.|+.|+||.+
T Consensus 425 t~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~V 476 (626)
T KOG2106|consen 425 TATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRV 476 (626)
T ss_pred eccceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEecCCCeEEEEEE
Confidence 9999999999999776666555566887765 4889999999999999965
No 139
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.65 E-value=3.1e-15 Score=167.42 Aligned_cols=231 Identities=17% Similarity=0.239 Sum_probs=173.1
Q ss_pred CCEEEEEECCCcEEEEECCCCCe-eEEEE------------------eccCCCCEEEEEEcCCCCE-EEEEeCCCeEEEE
Q 001455 804 KGLLCSGFSDGSIKMWDIKKQSA-MLVWD------------------VKEHRKAVTSFSLFEPGES-LLSGSADKTIGVW 863 (1074)
Q Consensus 804 ~~~LaSGs~DGtVrIWDl~t~~~-~~i~t------------------l~gH~~~VtsLafSpdg~~-LaSGS~DGtIrIW 863 (1074)
++++|.|+.|..|.|||+.-... .+..+ ..+|+++|.+++|+..-+. |+|||.|.+|++|
T Consensus 192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lW 271 (463)
T KOG0270|consen 192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLW 271 (463)
T ss_pred cceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEE
Confidence 45999999999999999852211 01111 2379999999999877665 8999999999999
Q ss_pred EccCCceEEEEEeccCCCeEEEccC---CCeEEEEecCCeEEEEeCC---CceeeeecCCCeEEEEEe---CCEEEEEEC
Q 001455 864 QMVQRKLELIEVIATKEPIRKLDTY---GKTIFASTQGHRMKVIDSS---RTLKDIYRSKGIKSMSVV---QGKIYIGCM 934 (1074)
Q Consensus 864 Dl~tg~~~~~~~~~h~~~V~s~s~d---g~~L~sgS~DgtI~VWDl~---~~l~~l~~~~~V~sLa~s---dgkLlaGs~ 934 (1074)
|+.+|++.. ....|...|.++.++ +..+++|+.|++|.+.|.+ .....+...+.|-.++|. ...++++..
T Consensus 272 D~~~g~p~~-s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~td 350 (463)
T KOG0270|consen 272 DVDTGKPKS-SITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTD 350 (463)
T ss_pred EcCCCCcce-ehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEecC
Confidence 999998654 334688899987655 4589999999999999998 344455567789999995 344888999
Q ss_pred CCcEEEEEccCCceeeeccccccccCCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCe--EEEccCCCCCeEEEE
Q 001455 935 DSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQ--ISIAPEKGTTIQAMA 1012 (1074)
Q Consensus 935 DgsI~IwDl~tg~~~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S~dDgtI~IWDl~t~~~--i~~l~gH~~~VtsLa 1012 (1074)
||+++-+|++... .++.....|..+|.++.++.....+++....|+.+++|++..... +....-.-+...|++
T Consensus 351 dG~v~~~D~R~~~-----~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~ 425 (463)
T KOG0270|consen 351 DGTVYYFDIRNPG-----KPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFA 425 (463)
T ss_pred CceEEeeecCCCC-----CceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeecc
Confidence 9999999999854 334556789999999999987666666666899999999754332 211111122355667
Q ss_pred EecCCC-EEEEEECCCcEEEEECCCCcEE
Q 001455 1013 VVEDFI-YLNYNSSASSLQIWLRGTQQKV 1040 (1074)
Q Consensus 1013 fSPDG~-~LaSGS~DGtIrIWDl~tg~~l 1040 (1074)
+.|+-. +++.|+..+.++|||+.+...+
T Consensus 426 ~~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 426 LDPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred cCCCcceEEEecCccceEEEeecccChhH
Confidence 777654 5677888888999998876654
No 140
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.65 E-value=1.1e-13 Score=164.18 Aligned_cols=273 Identities=14% Similarity=0.184 Sum_probs=200.4
Q ss_pred cEEEEEEeC---CEEEEEECCCcEEEEECCCCCeeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEccCCceEE
Q 001455 796 AVTALIYYK---GLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLEL 872 (1074)
Q Consensus 796 ~VtsLafS~---~~LaSGs~DGtVrIWDl~t~~~~~i~tl~gH~~~VtsLafSpdg~~LaSGS~DGtIrIWDl~tg~~~~ 872 (1074)
.|+++..-. +.++.|+.+|.+.+||+++++ .+++++++.+.|+++.=+|--+.++.|..+|+|.+++++.++...
T Consensus 161 ~Ital~HP~TYLNKIvvGs~~G~lql~Nvrt~K--~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~ 238 (910)
T KOG1539|consen 161 FITALLHPSTYLNKIVVGSSQGRLQLWNVRTGK--VVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILM 238 (910)
T ss_pred ceeeEecchhheeeEEEeecCCcEEEEEeccCc--EEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEE
Confidence 388887763 469999999999999999985 489999999999999999999999999999999999999998665
Q ss_pred EEEeccCCCeEEE--ccCCC-eEEEEecCCeEEEEeCCCcee-e-ee--cCCCeEEEEEeCCE--EEEEECCCcEEEEEc
Q 001455 873 IEVIATKEPIRKL--DTYGK-TIFASTQGHRMKVIDSSRTLK-D-IY--RSKGIKSMSVVQGK--IYIGCMDSSIQELAV 943 (1074)
Q Consensus 873 ~~~~~h~~~V~s~--s~dg~-~L~sgS~DgtI~VWDl~~~l~-~-l~--~~~~V~sLa~sdgk--LlaGs~DgsI~IwDl 943 (1074)
..... .+.|+++ ..+|. .+++|+..|.+.+||+++... . .. +.++|....|-.|+ +++.+.|+.+++|-.
T Consensus 239 sFk~d-~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vf 317 (910)
T KOG1539|consen 239 SFKQD-WGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVF 317 (910)
T ss_pred EEEcc-ccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEe
Confidence 44332 5788765 56677 556666779999999984322 2 22 23567777775444 667888999888866
Q ss_pred cCCceeeeccccccccCCCCCeEEEEEc-CCceEEEEEe-----------------------------------------
Q 001455 944 SNNVEREIKAPFKSWRLQSKPINSLVVY-KDWLYSASSS----------------------------------------- 981 (1074)
Q Consensus 944 ~tg~~~~i~~~~r~~~~h~~~I~sL~~s-pd~i~las~S----------------------------------------- 981 (1074)
.++.-.. ...+.-.+|..|..++.++ .++.++.+.+
T Consensus 318 D~~dg~p--R~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~ 395 (910)
T KOG1539|consen 318 DSGDGVP--RLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKL 395 (910)
T ss_pred eCCCCcc--hheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcC
Confidence 6432210 0113335666666666666 3344333322
Q ss_pred -----------------------cCCCeEEEEECCCCCeEE-Ecc-----CCCCCeEEEEEecCCCEEEEEECCCcEEEE
Q 001455 982 -----------------------VEGSNIKEWRRHRKPQIS-IAP-----EKGTTIQAMAVVEDFIYLNYNSSASSLQIW 1032 (1074)
Q Consensus 982 -----------------------~dDgtI~IWDl~t~~~i~-~l~-----gH~~~VtsLafSPDG~~LaSGS~DGtIrIW 1032 (1074)
.++...+.|+.+....-+ .+. .....+++++.++.|++.+.|+..|+|-+|
T Consensus 396 p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~f 475 (910)
T KOG1539|consen 396 PPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRF 475 (910)
T ss_pred CcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEE
Confidence 233455667765544311 221 123579999999999999999999999999
Q ss_pred ECCCCcEEEEE---eCC-CCeEEEEEc--CCEEEEEECCCcEEEEec
Q 001455 1033 LRGTQQKVGRI---SAG-SKITSLLTA--NDIVLCGTETGLIKGWIP 1073 (1074)
Q Consensus 1033 Dl~tg~~l~tL---~~h-s~VtsLa~d--g~~LaSGs~DG~IrIWdi 1073 (1074)
|+++|-...++ ..| ++|++++.| ++.+++++.+|.++.|+.
T Consensus 476 NmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f 522 (910)
T KOG1539|consen 476 NMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDF 522 (910)
T ss_pred EcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEec
Confidence 99999999888 356 569999988 668999999999999984
No 141
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.64 E-value=3e-16 Score=183.13 Aligned_cols=243 Identities=18% Similarity=0.304 Sum_probs=197.8
Q ss_pred EEEEECCCcEEEEECCCCCeeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEccCCceEEEEEeccCCCeEEE-
Q 001455 807 LCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATKEPIRKL- 885 (1074)
Q Consensus 807 LaSGs~DGtVrIWDl~t~~~~~i~tl~gH~~~VtsLafSpdg~~LaSGS~DGtIrIWDl~tg~~~~~~~~~h~~~V~s~- 885 (1074)
++.+..+..+++||.+. +..|...|.++..-..++.+++|+.|..+-+|.+....... .+.+|..+|.++
T Consensus 7 ~m~~~~~t~Lr~~~~~~--------~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~-S~~~hespIeSl~ 77 (825)
T KOG0267|consen 7 LMKTKRATKLRVWDTRE--------FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAIT-SLTGHESPIESLT 77 (825)
T ss_pred cceeeeeeccccccchh--------hhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhh-eeeccCCcceeee
Confidence 44555566677888653 34688899999987888889999999999999987654433 467899999885
Q ss_pred -ccCCCeEEEEecCCeEEEEeCC--Cceeeeec-CCCeEEEEEe-CCEEE-EEECCCcEEEEEccCCceeeecccccccc
Q 001455 886 -DTYGKTIFASTQGHRMKVIDSS--RTLKDIYR-SKGIKSMSVV-QGKIY-IGCMDSSIQELAVSNNVEREIKAPFKSWR 959 (1074)
Q Consensus 886 -s~dg~~L~sgS~DgtI~VWDl~--~~l~~l~~-~~~V~sLa~s-dgkLl-aGs~DgsI~IwDl~tg~~~~i~~~~r~~~ 959 (1074)
++....+++|+.+|+|++||+. ...+++.+ ...+.++.|. -+.+. .|+.|+.+.+||.+...+. +.+.
T Consensus 78 f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~------~~~~ 151 (825)
T KOG0267|consen 78 FDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCS------HTYK 151 (825)
T ss_pred cCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCce------eeec
Confidence 5666789999999999999998 34455554 3458888885 66655 4899999999999863332 3446
Q ss_pred CCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEccCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCcE
Q 001455 960 LQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQK 1039 (1074)
Q Consensus 960 ~h~~~I~sL~~spd~i~las~S~dDgtI~IWDl~t~~~i~~l~gH~~~VtsLafSPDG~~LaSGS~DGtIrIWDl~tg~~ 1039 (1074)
+|...+..+.+.|+|.+++.++ +|.++++||...|+....|.+|.+.+.++.|+|..-.+++||.|++|++||+++.+.
T Consensus 152 s~~~vv~~l~lsP~Gr~v~~g~-ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~ 230 (825)
T KOG0267|consen 152 SHTRVVDVLRLSPDGRWVASGG-EDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEV 230 (825)
T ss_pred CCcceeEEEeecCCCceeeccC-CcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEE
Confidence 7888899999999999999887 789999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCC-CCeEEEEEc--CCEEEEEECC
Q 001455 1040 VGRISAG-SKITSLLTA--NDIVLCGTET 1065 (1074)
Q Consensus 1040 l~tL~~h-s~VtsLa~d--g~~LaSGs~D 1065 (1074)
+...... ..|.+..|+ +..+++|..+
T Consensus 231 I~s~~~~~~~v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 231 ISSGKPETDGVRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred eeccCCccCCceeeeecCCceeeecCchh
Confidence 8887766 559998887 4466666544
No 142
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.63 E-value=1.2e-15 Score=186.37 Aligned_cols=240 Identities=15% Similarity=0.142 Sum_probs=177.0
Q ss_pred CCcEEEEEEe------CCEEEEEECCCcEEEEECCC----CCeeEEEEeccCCCCEEEEEEcCCCC-EEEEEeCCCeEEE
Q 001455 794 SGAVTALIYY------KGLLCSGFSDGSIKMWDIKK----QSAMLVWDVKEHRKAVTSFSLFEPGE-SLLSGSADKTIGV 862 (1074)
Q Consensus 794 ~~~VtsLafS------~~~LaSGs~DGtVrIWDl~t----~~~~~i~tl~gH~~~VtsLafSpdg~-~LaSGS~DGtIrI 862 (1074)
....+.++|. .|.||.|..||.|.+||... .+...+.+...|++.|..+.|++.+. .|++|+.||.|.|
T Consensus 64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~i 143 (1049)
T KOG0307|consen 64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILI 143 (1049)
T ss_pred cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEE
Confidence 3456677787 24799999999999999865 22235677789999999999999877 7999999999999
Q ss_pred EEccCCceEEEEEeccCCCeEEEccCCCeEEEEecCCeEEEEeCCCceeeeecCCCeEEEEEe--CCE-EEEEECCCcEE
Q 001455 863 WQMVQRKLELIEVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSSRTLKDIYRSKGIKSMSVV--QGK-IYIGCMDSSIQ 939 (1074)
Q Consensus 863 WDl~tg~~~~~~~~~h~~~V~s~s~dg~~L~sgS~DgtI~VWDl~~~l~~l~~~~~V~sLa~s--dgk-LlaGs~DgsI~ 939 (1074)
||+.+-+... ++. .......|.+++|. ..+ +.+|+.+|.+.
T Consensus 144 WDlnn~~tP~-------------~~~-----------------------~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~ 187 (1049)
T KOG0307|consen 144 WDLNKPETPF-------------TPG-----------------------SQAPPSEIKCLSWNRKVSHILASGSPSGRAV 187 (1049)
T ss_pred eccCCcCCCC-------------CCC-----------------------CCCCcccceEeccchhhhHHhhccCCCCCce
Confidence 9998643211 100 01123446666665 233 44477788888
Q ss_pred EEEccCCceeeeccccccccCCCCCeEEEEEcCCceEE-EEEecCC--CeEEEEECCC-CCeEEEccCCCCCeEEEEEec
Q 001455 940 ELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYS-ASSSVEG--SNIKEWRRHR-KPQISIAPEKGTTIQAMAVVE 1015 (1074)
Q Consensus 940 IwDl~tg~~~~i~~~~r~~~~h~~~I~sL~~spd~i~l-as~S~dD--gtI~IWDl~t-~~~i~~l~gH~~~VtsLafSP 1015 (1074)
|||++..+.+.-.. .......+..+.|||+...- +..+.+| -.|.+||++. ....+++.+|...|.++.|++
T Consensus 188 iWDlr~~~pii~ls----~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~ 263 (1049)
T KOG0307|consen 188 IWDLRKKKPIIKLS----DTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCP 263 (1049)
T ss_pred eccccCCCcccccc----cCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCC
Confidence 88888754322110 01112457789999986433 3333233 3899999654 446778889999999999998
Q ss_pred CC-CEEEEEECCCcEEEEECCCCcEEEEEeCC-CCeEEEEEc---CCEEEEEECCCcEEEEec
Q 001455 1016 DF-IYLNYNSSASSLQIWLRGTQQKVGRISAG-SKITSLLTA---NDIVLCGTETGLIKGWIP 1073 (1074)
Q Consensus 1016 DG-~~LaSGS~DGtIrIWDl~tg~~l~tL~~h-s~VtsLa~d---g~~LaSGs~DG~IrIWdi 1073 (1074)
.+ .+++|++.|+.|.+|+.++|+.+..+... +++..+.|. +..+++++.||.|.|+.+
T Consensus 264 ~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl 326 (1049)
T KOG0307|consen 264 QDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSL 326 (1049)
T ss_pred CCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeee
Confidence 55 89999999999999999999999999875 568889997 448999999999999875
No 143
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.63 E-value=4e-15 Score=175.14 Aligned_cols=228 Identities=8% Similarity=0.132 Sum_probs=167.1
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEEccCCce--EEEEEeccCC-CeEE---E---ccCCCeEEEEecCCeEEEEeCCCc
Q 001455 839 VTSFSLFEPGESLLSGSADKTIGVWQMVQRKL--ELIEVIATKE-PIRK---L---DTYGKTIFASTQGHRMKVIDSSRT 909 (1074)
Q Consensus 839 VtsLafSpdg~~LaSGS~DGtIrIWDl~tg~~--~~~~~~~h~~-~V~s---~---s~dg~~L~sgS~DgtI~VWDl~~~ 909 (1074)
...|..+++-..++.+|. ...+++.+..... .+....+.+. ...+ + ..+.++|++++..|.|.+||+++.
T Consensus 42 ~nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~ 120 (839)
T KOG0269|consen 42 ANAISVNRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLNKS 120 (839)
T ss_pred cceEeecCCcceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecCcc
Confidence 455666777777777774 3567776654322 1111111111 1111 1 345679999999999999999852
Q ss_pred e-----eeeec-CCCeEEEEEe---CCEEEEEECCCcEEEEEccCCceeeeccccccccCCCCCeEEEEEcCCceEEEEE
Q 001455 910 L-----KDIYR-SKGIKSMSVV---QGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASS 980 (1074)
Q Consensus 910 l-----~~l~~-~~~V~sLa~s---dgkLlaGs~DgsI~IwDl~tg~~~~i~~~~r~~~~h~~~I~sL~~spd~i~las~ 980 (1074)
. ..+.. ...+.++.|. ...+++|+.||.|++||++..... ..+.+....|..+.|+|...+.++.
T Consensus 121 ~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~------~t~~~nSESiRDV~fsp~~~~~F~s 194 (839)
T KOG0269|consen 121 IRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSK------STFRSNSESIRDVKFSPGYGNKFAS 194 (839)
T ss_pred ccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccccc------ccccccchhhhceeeccCCCceEEE
Confidence 2 12332 4569999995 445888999999999999985543 3345678899999999876655555
Q ss_pred ecCCCeEEEEECCC-CCeEEEccCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCcE--EEEEeCCCCeEEEEEcCC
Q 001455 981 SVEGSNIKEWRRHR-KPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQK--VGRISAGSKITSLLTAND 1057 (1074)
Q Consensus 981 S~dDgtI~IWDl~t-~~~i~~l~gH~~~VtsLafSPDG~~LaSGS~DGtIrIWDl~tg~~--l~tL~~hs~VtsLa~dg~ 1057 (1074)
..++|.+++||++. .++...+..|.++|.++.|+|++.||||||.|++|+||+..+++. +.++....+|.++.|-+.
T Consensus 195 ~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~ 274 (839)
T KOG0269|consen 195 IHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPA 274 (839)
T ss_pred ecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccC
Confidence 55899999999765 556778899999999999999999999999999999999876544 667776778999998743
Q ss_pred ---EEEEEE--CCCcEEEEec
Q 001455 1058 ---IVLCGT--ETGLIKGWIP 1073 (1074)
Q Consensus 1058 ---~LaSGs--~DG~IrIWdi 1073 (1074)
.|++++ .|..|+|||+
T Consensus 275 ~~~hLAtcsmv~dtsV~VWDv 295 (839)
T KOG0269|consen 275 RSYHLATCSMVVDTSVHVWDV 295 (839)
T ss_pred ccchhhhhhccccceEEEEee
Confidence 677655 5888999996
No 144
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.63 E-value=1.5e-14 Score=162.84 Aligned_cols=255 Identities=9% Similarity=0.043 Sum_probs=187.2
Q ss_pred ECCCcEEEEECCCCCeeEEEEeccC--CCCEEEEEEcCCCCE-EEEEeCCCeEEEEEccC--CceEEEEEeccCCCeEEE
Q 001455 811 FSDGSIKMWDIKKQSAMLVWDVKEH--RKAVTSFSLFEPGES-LLSGSADKTIGVWQMVQ--RKLELIEVIATKEPIRKL 885 (1074)
Q Consensus 811 s~DGtVrIWDl~t~~~~~i~tl~gH--~~~VtsLafSpdg~~-LaSGS~DGtIrIWDl~t--g~~~~~~~~~h~~~V~s~ 885 (1074)
+...++++||+...... ..+-.| ...+.+++|+..... +++.+.|+.|++|.-.. +........... .-.|+
T Consensus 9 S~gd~~kl~D~s~~~~~--~~~~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd-~~~Cv 85 (673)
T KOG4378|consen 9 STGDKTKLSDFSDLETK--SEYVHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGD-NAFCV 85 (673)
T ss_pred ccCCceEEeecccccCc--cccccCCCCCcceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccc-hHHHH
Confidence 33446899999865432 122222 234899999876643 45667799999997432 222222211111 11222
Q ss_pred --ccCCCeEEEEecCCeEEEEeCCCce--eeeec-CCCeEEEEEe--CCEEEEEECCCcEEEEEccCCceeeeccccccc
Q 001455 886 --DTYGKTIFASTQGHRMKVIDSSRTL--KDIYR-SKGIKSMSVV--QGKIYIGCMDSSIQELAVSNNVEREIKAPFKSW 958 (1074)
Q Consensus 886 --s~dg~~L~sgS~DgtI~VWDl~~~l--~~l~~-~~~V~sLa~s--dgkLlaGs~DgsI~IwDl~tg~~~~i~~~~r~~ 958 (1074)
.....++++|+.++.|+|||+.... +.+.. ...|+++.+. |.++++++..|.|.+..+.++.....+.
T Consensus 86 ~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~----- 160 (673)
T KOG4378|consen 86 ACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFT----- 160 (673)
T ss_pred hhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCcccccee-----
Confidence 2344799999999999999998432 22222 4569999996 6678889999999999999876543321
Q ss_pred cCCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCe-EEEccCCCCCeEEEEEec-CCCEEEEEECCCcEEEEECCC
Q 001455 959 RLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQ-ISIAPEKGTTIQAMAVVE-DFIYLNYNSSASSLQIWLRGT 1036 (1074)
Q Consensus 959 ~~h~~~I~sL~~spd~i~las~S~dDgtI~IWDl~t~~~-i~~l~gH~~~VtsLafSP-DG~~LaSGS~DGtIrIWDl~t 1036 (1074)
...+..+.-+.+++...++++...++|.|.+||...... ......|..+...++|+| +..+|++.|.|..|.+||...
T Consensus 161 ~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s 240 (673)
T KOG4378|consen 161 IDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRS 240 (673)
T ss_pred cCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeeccc
Confidence 123567778999999888887777999999999887654 445567999999999999 567889999999999999999
Q ss_pred CcEEEEEeCCCCeEEEEEc--CCEEEEEECCCcEEEEec
Q 001455 1037 QQKVGRISAGSKITSLLTA--NDIVLCGTETGLIKGWIP 1073 (1074)
Q Consensus 1037 g~~l~tL~~hs~VtsLa~d--g~~LaSGs~DG~IrIWdi 1073 (1074)
.....++...++..+++|. |.+|+.|+..|.|..||+
T Consensus 241 ~~s~~~l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~ 279 (673)
T KOG4378|consen 241 QASTDRLTYSHPLSTVAFSECGTYLCAGNSKGELIAYDM 279 (673)
T ss_pred ccccceeeecCCcceeeecCCceEEEeecCCceEEEEec
Confidence 8888888888888888875 779999999999999986
No 145
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.62 E-value=3.4e-14 Score=151.99 Aligned_cols=235 Identities=16% Similarity=0.179 Sum_probs=170.3
Q ss_pred ccCCCCEEEEEEcC-CCCEEEEEeCCCeEEEEEccCCce----------EEEE----EeccCCCeEE--Ec-cCCCeEEE
Q 001455 833 KEHRKAVTSFSLFE-PGESLLSGSADKTIGVWQMVQRKL----------ELIE----VIATKEPIRK--LD-TYGKTIFA 894 (1074)
Q Consensus 833 ~gH~~~VtsLafSp-dg~~LaSGS~DGtIrIWDl~tg~~----------~~~~----~~~h~~~V~s--~s-~dg~~L~s 894 (1074)
..|.+.|+++...+ .|+++++|+.||.|.+||+++... .+.. ..+|+-.|.+ +- .+...+.+
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence 46899999999987 477899999999999999976431 1111 1234445554 23 35557888
Q ss_pred EecCCeEEEEeCCC--ceeeeecCCCeEEEEEe-----CCEEEEEECCCcEEEEEccCCceeeeccccccccCCCCCeEE
Q 001455 895 STQGHRMKVIDSSR--TLKDIYRSKGIKSMSVV-----QGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINS 967 (1074)
Q Consensus 895 gS~DgtI~VWDl~~--~l~~l~~~~~V~sLa~s-----dgkLlaGs~DgsI~IwDl~tg~~~~i~~~~r~~~~h~~~I~s 967 (1074)
++.|.+++|||.+. ....+.-.+.|.+-+++ .--+++|..|-.|++.|+.+|... +.+.+|...|.+
T Consensus 120 sSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~s------H~LsGHr~~vla 193 (397)
T KOG4283|consen 120 SSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFS------HTLSGHRDGVLA 193 (397)
T ss_pred ccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcce------eeeccccCceEE
Confidence 89999999999983 34444456667666664 222555888899999999998754 456899999999
Q ss_pred EEEcCCceEEEEEecCCCeEEEEECCCC-Ce--------------EEEccCCCCCeEEEEEecCCCEEEEEECCCcEEEE
Q 001455 968 LVVYKDWLYSASSSVEGSNIKEWRRHRK-PQ--------------ISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIW 1032 (1074)
Q Consensus 968 L~~spd~i~las~S~dDgtI~IWDl~t~-~~--------------i~~l~gH~~~VtsLafSPDG~~LaSGS~DGtIrIW 1032 (1074)
+.++|...+++..+..||.|++||++.. .+ .+.-..|.+.|..++|+.||.++++.+.|..+++|
T Consensus 194 V~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~w 273 (397)
T KOG4283|consen 194 VEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVW 273 (397)
T ss_pred EEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEe
Confidence 9999999998887779999999997532 12 22334677889999999999999999999999999
Q ss_pred ECCCCcEEE-EE----------------eCCCCeEEEEEcCC--EEEEEECCCcEEEEec
Q 001455 1033 LRGTQQKVG-RI----------------SAGSKITSLLTAND--IVLCGTETGLIKGWIP 1073 (1074)
Q Consensus 1033 Dl~tg~~l~-tL----------------~~hs~VtsLa~dg~--~LaSGs~DG~IrIWdi 1073 (1074)
+..+|+... .+ .++..|.-+.+.+. .|++......|+.|+.
T Consensus 274 n~~~G~ntl~~~g~~~~n~~~~~~~~~~~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~ 333 (397)
T KOG4283|consen 274 NMESGRNTLREFGPIIHNQTTSFAVHIQSMDSDVFVLFPNDGSLALLNLLEGSFVRRLST 333 (397)
T ss_pred ecccCcccccccccccccccccceEEEeecccceEEEEecCCeEEEEEccCceEEEeeec
Confidence 988765421 11 11122222333323 6677777778888874
No 146
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.62 E-value=7.6e-14 Score=162.86 Aligned_cols=286 Identities=13% Similarity=0.149 Sum_probs=197.7
Q ss_pred EEEeecCCCCCcEEEEEEe--CC---EEEEEECCCcEEEEECCCCCeeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCe
Q 001455 785 QILEASHKCSGAVTALIYY--KG---LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKT 859 (1074)
Q Consensus 785 l~le~~~gH~~~VtsLafS--~~---~LaSGs~DGtVrIWDl~t~~~~~i~tl~gH~~~VtsLafSpdg~~LaSGS~DGt 859 (1074)
.++....||..+|+|+.|- .. ++++|+.||.|++|.++......+.++++|...+.|+. .......+...|++
T Consensus 45 ~i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g~~~~~~cv~--a~~~~~~~~~ad~~ 122 (764)
T KOG1063|consen 45 LIVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQGHCKECVCVV--ARSSVMTCKAADGT 122 (764)
T ss_pred eeEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEeecCcceeEEEEE--eeeeEEEeeccCce
Confidence 3445566999999999998 22 69999999999999999666667888888776666554 32222333378999
Q ss_pred EEEEEccCCceEEEEEe--ccCCCeE-EE--cc-CCC-eEEEEecCCeEEEEeCC----Cceeeeec-CCCeEEEEEe--
Q 001455 860 IGVWQMVQRKLELIEVI--ATKEPIR-KL--DT-YGK-TIFASTQGHRMKVIDSS----RTLKDIYR-SKGIKSMSVV-- 925 (1074)
Q Consensus 860 IrIWDl~tg~~~~~~~~--~h~~~V~-s~--s~-dg~-~L~sgS~DgtI~VWDl~----~~l~~l~~-~~~V~sLa~s-- 925 (1074)
+.+||.+..+..+.... ..+..+. ++ .+ ++. .++.|+.+..|.++.-. .....+.+ .+.|++++|.
T Consensus 123 v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~ 202 (764)
T KOG1063|consen 123 VSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARL 202 (764)
T ss_pred EEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhcc
Confidence 99999965552222111 1122121 22 34 333 44556667778888655 22333343 4569999995
Q ss_pred C--CE-EEEEECCCcEEEEEccCCcee------------------------eec-cccccccCCCCCeEEEEEcCCceEE
Q 001455 926 Q--GK-IYIGCMDSSIQELAVSNNVER------------------------EIK-APFKSWRLQSKPINSLVVYKDWLYS 977 (1074)
Q Consensus 926 d--gk-LlaGs~DgsI~IwDl~tg~~~------------------------~i~-~~~r~~~~h~~~I~sL~~spd~i~l 977 (1074)
. .. +++++.|..|++|.+.-+... .+. .....+.+|...|+++.++|.+..+
T Consensus 203 ~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~L 282 (764)
T KOG1063|consen 203 GGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDL 282 (764)
T ss_pred CCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhh
Confidence 2 23 456899999999988543300 000 0012345899999999999999877
Q ss_pred EEEecCCCeEEEEECCCC--C-----eEEEccCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCC---CcEEEEEeCC-
Q 001455 978 ASSSVEGSNIKEWRRHRK--P-----QISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGT---QQKVGRISAG- 1046 (1074)
Q Consensus 978 as~S~dDgtI~IWDl~t~--~-----~i~~l~gH~~~VtsLafSPDG~~LaSGS~DGtIrIWDl~t---g~~l~tL~~h- 1046 (1074)
++.+ .|.++.+|..... - .+....|.....+...|+|++..+++-+..|..++|..++ ......+.||
T Consensus 283 LSAS-aDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~ 361 (764)
T KOG1063|consen 283 LSAS-ADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHV 361 (764)
T ss_pred eecc-cCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeecccccccc
Confidence 7776 7899999997654 2 1233334555789999999999999999999999998333 2334556677
Q ss_pred CCeEEEEEc--CCEEEEEECCCcEEEEec
Q 001455 1047 SKITSLLTA--NDIVLCGTETGLIKGWIP 1073 (1074)
Q Consensus 1047 s~VtsLa~d--g~~LaSGs~DG~IrIWdi 1073 (1074)
..|+.++|+ |.+|++.|.|.+-|+|-+
T Consensus 362 ~~V~dv~W~psGeflLsvs~DQTTRlFa~ 390 (764)
T KOG1063|consen 362 DGVKDVDWDPSGEFLLSVSLDQTTRLFAR 390 (764)
T ss_pred ccceeeeecCCCCEEEEeccccceeeecc
Confidence 459999998 889999999999999754
No 147
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.62 E-value=1.9e-12 Score=144.20 Aligned_cols=275 Identities=19% Similarity=0.288 Sum_probs=204.2
Q ss_pred CCCCCcEEEEEEe-C-CEEEEEEC-CCcEEEEECCCCCeeEEEEeccCCCCEEEEEEcCCCC-EEEEEeCCCeEEEEEcc
Q 001455 791 HKCSGAVTALIYY-K-GLLCSGFS-DGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGE-SLLSGSADKTIGVWQMV 866 (1074)
Q Consensus 791 ~gH~~~VtsLafS-~-~~LaSGs~-DGtVrIWDl~t~~~~~i~tl~gH~~~VtsLafSpdg~-~LaSGS~DGtIrIWDl~ 866 (1074)
..|...|.++.|+ + ..+++++. |+.+++|+...+. .+..+.+|...|.+++|+|++. .+++++.|+.|++||..
T Consensus 152 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~ 229 (466)
T COG2319 152 EGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGK--PLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLS 229 (466)
T ss_pred ecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCc--eEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECC
Confidence 3889999999999 3 37888875 9999999999753 4677888999999999999998 56666999999999988
Q ss_pred CCceEEEEEeccCCC-eEEEccCCCeEEEEecCCeEEEEeCCCce---eee-ecCCCeEEEEEe--CCEEEEEECCCcEE
Q 001455 867 QRKLELIEVIATKEP-IRKLDTYGKTIFASTQGHRMKVIDSSRTL---KDI-YRSKGIKSMSVV--QGKIYIGCMDSSIQ 939 (1074)
Q Consensus 867 tg~~~~~~~~~h~~~-V~s~s~dg~~L~sgS~DgtI~VWDl~~~l---~~l-~~~~~V~sLa~s--dgkLlaGs~DgsI~ 939 (1074)
.+.........|... +..+++++..+++++.|+.+++|+..... ... .+...+.++.+. ...+++++.|+.+.
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~ 309 (466)
T COG2319 230 TGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVR 309 (466)
T ss_pred CCcEEeeecCCCCcceeEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEE
Confidence 766544345555555 55788888888899999999999987322 222 224668888885 34466788888899
Q ss_pred EEEccCCceeeeccccccccCCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEccCCCCCeEEEEEecCCCE
Q 001455 940 ELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIY 1019 (1074)
Q Consensus 940 IwDl~tg~~~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S~dDgtI~IWDl~t~~~i~~l~gH~~~VtsLafSPDG~~ 1019 (1074)
+||..+........ ...|...+..+.+.+++..+......|+.+.+|+.............. .+..+.+++ ...
T Consensus 310 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~ 383 (466)
T COG2319 310 LWDLETGKLLSSLT----LKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHS-NVLSVSFSP-DGR 383 (466)
T ss_pred EEEcCCCceEEEee----ecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCceeEEecCCc-eEEEEEECC-CCC
Confidence 99888765433321 234555788888833323444442356889999988776333332222 288999988 544
Q ss_pred EEE-EECCCcEEEEECCCCcEEEEEeCC-CCeEEEEEc--CCEEEEEECCCcEEEEec
Q 001455 1020 LNY-NSSASSLQIWLRGTQQKVGRISAG-SKITSLLTA--NDIVLCGTETGLIKGWIP 1073 (1074)
Q Consensus 1020 LaS-GS~DGtIrIWDl~tg~~l~tL~~h-s~VtsLa~d--g~~LaSGs~DG~IrIWdi 1073 (1074)
+.+ +..++.+.+|+............+ ..+....+. +..+++++.++.+++|++
T Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (466)
T COG2319 384 VVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDL 441 (466)
T ss_pred EEEEecCCCceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEecCCCcEEEEec
Confidence 444 688999999999999888888877 677766554 668888999999999986
No 148
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.62 E-value=5.4e-15 Score=156.33 Aligned_cols=278 Identities=14% Similarity=0.141 Sum_probs=188.1
Q ss_pred CCCCcEEEEEEe-CCEEEEEECCCcEEEEECCCCCeeEEEEec-cCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEccCCc
Q 001455 792 KCSGAVTALIYY-KGLLCSGFSDGSIKMWDIKKQSAMLVWDVK-EHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRK 869 (1074)
Q Consensus 792 gH~~~VtsLafS-~~~LaSGs~DGtVrIWDl~t~~~~~i~tl~-gH~~~VtsLafSpdg~~LaSGS~DGtIrIWDl~tg~ 869 (1074)
+|.+.|+++.|. +++|.+|..-|.|++|++++... ...+. .|...|+.+.--|+ ..+.+-+.|+.+.+|++.-+.
T Consensus 12 p~~~~v~s~~fqa~~rL~sg~~~G~V~~w~lqt~r~--~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s~ 88 (323)
T KOG0322|consen 12 PHSSSVTSVLFQANERLMSGLSVGIVKMWVLQTERD--LPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYSA 88 (323)
T ss_pred cccchheehhhccchhhhcccccceEEEEEeecCcc--chhhhhhccceeeceeecCC-cchhhcCCCceEEEEEccCcc
Confidence 789999999999 88999999999999999998765 34455 57788999998887 568899999999999998765
Q ss_pred eEEEEEeccCCC-eE--EEccCCC---e-EEEEecCC-eEEEEeCCCceeeee-------cCCCeEEEEEe--CCE---E
Q 001455 870 LELIEVIATKEP-IR--KLDTYGK---T-IFASTQGH-RMKVIDSSRTLKDIY-------RSKGIKSMSVV--QGK---I 929 (1074)
Q Consensus 870 ~~~~~~~~h~~~-V~--s~s~dg~---~-L~sgS~Dg-tI~VWDl~~~l~~l~-------~~~~V~sLa~s--dgk---L 929 (1074)
...........- .. ++.+.++ . ++.-+... .+.+-|......... ..+.+.|..++ .+. +
T Consensus 89 ~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~ll 168 (323)
T KOG0322|consen 89 FISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLL 168 (323)
T ss_pred eEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEE
Confidence 432221111110 00 1222221 1 11111111 122233322221111 13446777664 333 5
Q ss_pred EEEECCCcEEEEEccCCceeeecc----ccccccCCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCC--CCe--EEEc
Q 001455 930 YIGCMDSSIQELAVSNNVEREIKA----PFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHR--KPQ--ISIA 1001 (1074)
Q Consensus 930 laGs~DgsI~IwDl~tg~~~~i~~----~~r~~~~h~~~I~sL~~spd~i~las~S~dDgtI~IWDl~t--~~~--i~~l 1001 (1074)
++|-.+|.+.+||+.++......+ .......|..++.++.+.+....-++++.+ ..+..|+++. +.+ ....
T Consensus 169 laGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~-dkl~~~Sl~~s~gslq~~~e~ 247 (323)
T KOG0322|consen 169 LAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGAD-DKLVMYSLNHSTGSLQIRKEI 247 (323)
T ss_pred EEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCcc-ccceeeeeccccCcccccceE
Confidence 568899999999999974322211 112234578899999988654444555533 3577787643 221 1122
Q ss_pred cCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCcEEEEEeCCC-CeEEEEEcCC--EEEEEECCCcEEEEec
Q 001455 1002 PEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAGS-KITSLLTAND--IVLCGTETGLIKGWIP 1073 (1074)
Q Consensus 1002 ~gH~~~VtsLafSPDG~~LaSGS~DGtIrIWDl~tg~~l~tL~~hs-~VtsLa~dg~--~LaSGs~DG~IrIWdi 1073 (1074)
.-....|..+..-||++.+||++.|+.||||+.+++.++..++-|. .|++++|+++ .+|+++.|++|.+|+.
T Consensus 248 ~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 248 TLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred EecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 2233458888999999999999999999999999999999999994 5999999855 9999999999999985
No 149
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.61 E-value=1.8e-14 Score=162.20 Aligned_cols=251 Identities=11% Similarity=0.084 Sum_probs=186.4
Q ss_pred EEEEEEe-CCE--EEEEECCCcEEEEECCCCC--eeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEccCCceE
Q 001455 797 VTALIYY-KGL--LCSGFSDGSIKMWDIKKQS--AMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLE 871 (1074)
Q Consensus 797 VtsLafS-~~~--LaSGs~DGtVrIWDl~t~~--~~~i~tl~gH~~~VtsLafSpdg~~LaSGS~DGtIrIWDl~tg~~~ 871 (1074)
|.++.|+ .+. +++.+.|..+++|.-.... ...+....+. .-.|++......++++||..+.|+|||++. +..
T Consensus 37 ~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd--~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~-kl~ 113 (673)
T KOG4378|consen 37 DFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGD--NAFCVACASQSLYEISGGQSGCVKIWDLRA-KLI 113 (673)
T ss_pred ceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccc--hHHHHhhhhcceeeeccCcCceeeehhhHH-HHH
Confidence 8999999 553 5566778899999765442 2233333332 344555555568899999999999999984 455
Q ss_pred EEEEeccCCCeEEEc--cCCCeEEEEecCCeEEEEeCCCceee--eec--CCCeEEEEEe-CCE--EEEEECCCcEEEEE
Q 001455 872 LIEVIATKEPIRKLD--TYGKTIFASTQGHRMKVIDSSRTLKD--IYR--SKGIKSMSVV-QGK--IYIGCMDSSIQELA 942 (1074)
Q Consensus 872 ~~~~~~h~~~V~s~s--~dg~~L~sgS~DgtI~VWDl~~~l~~--l~~--~~~V~sLa~s-dgk--LlaGs~DgsI~IwD 942 (1074)
.....+|...|+++. ....+|++++.+|.|.+..+....+. +.. +..|+-+.|+ ..+ +.+++.+|.|.+||
T Consensus 114 hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwD 193 (673)
T KOG4378|consen 114 HRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWD 193 (673)
T ss_pred hhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEe
Confidence 667788999999865 55669999999999999998743332 222 3457788886 333 55689999999999
Q ss_pred ccCCceeeeccccccccCCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEccCCCCCeEEEEEecCCCEEEE
Q 001455 943 VSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNY 1022 (1074)
Q Consensus 943 l~tg~~~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S~dDgtI~IWDl~t~~~i~~l~gH~~~VtsLafSPDG~~LaS 1022 (1074)
+....... .....|..|...++|+|....++..-.-|..|.+||.........+ .-..+..+++|+++|.+|+.
T Consensus 194 v~g~sp~~-----~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l-~y~~Plstvaf~~~G~~L~a 267 (673)
T KOG4378|consen 194 VQGMSPIF-----HASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRL-TYSHPLSTVAFSECGTYLCA 267 (673)
T ss_pred ccCCCccc-----chhhhccCCcCcceecCCccceEEEecccceEEEeeccccccccee-eecCCcceeeecCCceEEEe
Confidence 98743321 2335688999999999876555444447899999999876655444 23457899999999999999
Q ss_pred EECCCcEEEEECCC-CcEEEEEeCCC-CeEEEEEcC
Q 001455 1023 NSSASSLQIWLRGT-QQKVGRISAGS-KITSLLTAN 1056 (1074)
Q Consensus 1023 GS~DGtIrIWDl~t-g~~l~tL~~hs-~VtsLa~dg 1056 (1074)
|+..|.|..||++. ..++.++..|. .|++++|..
T Consensus 268 G~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~ 303 (673)
T KOG4378|consen 268 GNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQP 303 (673)
T ss_pred ecCCceEEEEecccCCCCceEeeecccceeEEEeee
Confidence 99999999999764 56799999994 499999863
No 150
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.61 E-value=1.2e-13 Score=161.13 Aligned_cols=232 Identities=16% Similarity=0.178 Sum_probs=181.4
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCeEEEEEccCCceEEEEEecc-CCCeEEEcc-CCCeEEEEecCCeEEEEeCCCce--
Q 001455 835 HRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIAT-KEPIRKLDT-YGKTIFASTQGHRMKVIDSSRTL-- 910 (1074)
Q Consensus 835 H~~~VtsLafSpdg~~LaSGS~DGtIrIWDl~tg~~~~~~~~~h-~~~V~s~s~-dg~~L~sgS~DgtI~VWDl~~~l-- 910 (1074)
-..+|++++|+.+.+.||.+-.||.|.+|++..+=.......++ ...|.++.+ .+..+++.+.+|.|.-||+....
T Consensus 24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~lk~~ 103 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGGRLFSSGLSGSITEWDLHTLKQK 103 (691)
T ss_pred eccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCCeEEeecCCceEEEEecccCcee
Confidence 35789999999999999999999999999998865444444444 445666554 48899999999999999987332
Q ss_pred eeee-cCCCeEEEEEe--CCEEEEEECCCcEEEEEccCCceeeeccccccccCCCCCeEEEEEcCCceEEEEEecCCCeE
Q 001455 911 KDIY-RSKGIKSMSVV--QGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNI 987 (1074)
Q Consensus 911 ~~l~-~~~~V~sLa~s--dgkLlaGs~DgsI~IwDl~tg~~~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S~dDgtI 987 (1074)
..+. ..+.|++++.. +..+..||.||.+..++...+..... +.+..+...+.++.|++++..+++++ .||.|
T Consensus 104 ~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~----r~l~rq~sRvLslsw~~~~~~i~~Gs-~Dg~I 178 (691)
T KOG2048|consen 104 YNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYK----RSLMRQKSRVLSLSWNPTGTKIAGGS-IDGVI 178 (691)
T ss_pred EEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEE----eecccccceEEEEEecCCccEEEecc-cCceE
Confidence 2233 35679999996 44577799999887777777654333 45566688999999999999888776 78999
Q ss_pred EEEECCCCCeEEEcc--------CCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCC-eEEEEEc--C
Q 001455 988 KEWRRHRKPQISIAP--------EKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAGSK-ITSLLTA--N 1056 (1074)
Q Consensus 988 ~IWDl~t~~~i~~l~--------gH~~~VtsLafSPDG~~LaSGS~DGtIrIWDl~tg~~l~tL~~hs~-VtsLa~d--g 1056 (1074)
++||...+....... +...-|+++.|-.++ .|++|..-|+|++||...|+.+..+..|.. |.+++.+ +
T Consensus 179 riwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~ 257 (691)
T KOG2048|consen 179 RIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNE 257 (691)
T ss_pred EEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCC
Confidence 999998877555111 123357888887555 689999999999999999999999999955 9997765 6
Q ss_pred CEEEEEECCCcEEEEe
Q 001455 1057 DIVLCGTETGLIKGWI 1072 (1074)
Q Consensus 1057 ~~LaSGs~DG~IrIWd 1072 (1074)
++++++|.|++|.-+.
T Consensus 258 d~vfsaGvd~~ii~~~ 273 (691)
T KOG2048|consen 258 DRVFSAGVDPKIIQYS 273 (691)
T ss_pred CeEEEccCCCceEEEE
Confidence 7999999999987664
No 151
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.61 E-value=3.4e-12 Score=142.08 Aligned_cols=274 Identities=19% Similarity=0.320 Sum_probs=204.2
Q ss_pred CCCCcEEEEEEe--CCEEEEEECCCcEEEEECCCCCeeEEEEeccCC-CCEEEEEE-cCCCC-EEEEEeC-CCeEEEEEc
Q 001455 792 KCSGAVTALIYY--KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHR-KAVTSFSL-FEPGE-SLLSGSA-DKTIGVWQM 865 (1074)
Q Consensus 792 gH~~~VtsLafS--~~~LaSGs~DGtVrIWDl~t~~~~~i~tl~gH~-~~VtsLaf-Spdg~-~LaSGS~-DGtIrIWDl 865 (1074)
+|...|.++.+. +..++.++.|+.+.+|+...+. .....+.++. ..+..+.+ ++++. .++..+. |+.+.+||.
T Consensus 63 ~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 141 (466)
T COG2319 63 GHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGE-KLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDL 141 (466)
T ss_pred eccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCc-eeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEe
Confidence 789999999999 5578888899999999998874 2355565644 37888887 88888 4555444 999999999
Q ss_pred cCCceEEEEEeccCCCeE--EEccCCCeEEEEec-CCeEEEEeCCC--ceeeeec-CCCeEEEEEe-CCE-EEEE-ECCC
Q 001455 866 VQRKLELIEVIATKEPIR--KLDTYGKTIFASTQ-GHRMKVIDSSR--TLKDIYR-SKGIKSMSVV-QGK-IYIG-CMDS 936 (1074)
Q Consensus 866 ~tg~~~~~~~~~h~~~V~--s~s~dg~~L~sgS~-DgtI~VWDl~~--~l~~l~~-~~~V~sLa~s-dgk-LlaG-s~Dg 936 (1074)
............|...|. .+.+++..+++++. ++.+++|+... ....+.. ...|.++.+. ++. ++++ +.|+
T Consensus 142 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~ 221 (466)
T COG2319 142 STPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDG 221 (466)
T ss_pred cCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCC
Confidence 872234455667877777 46788888888885 99999999984 4444443 5669999996 664 5554 8999
Q ss_pred cEEEEEccCCceeeeccccccccCCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCe-EEEccCCCCCeEEEEEec
Q 001455 937 SIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQ-ISIAPEKGTTIQAMAVVE 1015 (1074)
Q Consensus 937 sI~IwDl~tg~~~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S~dDgtI~IWDl~t~~~-i~~l~gH~~~VtsLafSP 1015 (1074)
.|++||...+..... .+..|.... ...+++++.++++++ .|+.+++|+...... .....+|...|.++.|+|
T Consensus 222 ~i~~wd~~~~~~~~~-----~~~~~~~~~-~~~~~~~~~~~~~~~-~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 294 (466)
T COG2319 222 TIRLWDLSTGKLLRS-----TLSGHSDSV-VSSFSPDGSLLASGS-SDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSP 294 (466)
T ss_pred cEEEEECCCCcEEee-----ecCCCCcce-eEeECCCCCEEEEec-CCCcEEEeeecCCCcEEEEEecCCccEEEEEECC
Confidence 999998875544331 234455543 337888886656444 789999999876553 444467889999999999
Q ss_pred CCCEEEEEECCCcEEEEECCCCcEEEEEe--CCCC-eEEEEEcC--CEEEEE-ECCCcEEEEec
Q 001455 1016 DFIYLNYNSSASSLQIWLRGTQQKVGRIS--AGSK-ITSLLTAN--DIVLCG-TETGLIKGWIP 1073 (1074)
Q Consensus 1016 DG~~LaSGS~DGtIrIWDl~tg~~l~tL~--~hs~-VtsLa~dg--~~LaSG-s~DG~IrIWdi 1073 (1074)
++..+++++.|+.+.+|+..+........ .|.. |..+.+.+ ..++.+ ..|+.+.+|+.
T Consensus 295 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 358 (466)
T COG2319 295 DGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDL 358 (466)
T ss_pred CCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeec
Confidence 99999999999999999999888777766 6654 77777731 455555 68899999975
No 152
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.60 E-value=4.7e-14 Score=162.74 Aligned_cols=264 Identities=16% Similarity=0.221 Sum_probs=190.5
Q ss_pred cEEEEEEe-CC-EEEEEECCCcEEEEECCCCCeeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEccCCceEEE
Q 001455 796 AVTALIYY-KG-LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELI 873 (1074)
Q Consensus 796 ~VtsLafS-~~-~LaSGs~DGtVrIWDl~t~~~~~i~tl~gH~~~VtsLafSpdg~~LaSGS~DGtIrIWDl~tg~~~~~ 873 (1074)
.|..++|. +| .++.+. +..+.+||.+.+. ...++++|++.|.|++|+.||+.++||+.|+.|.+|+..- .-.
T Consensus 14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG~--llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~kl---EG~ 87 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDGT--LLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKL---EGI 87 (1081)
T ss_pred chheeEECCCCceEEEec-CCEEEEEeCCCcc--cccccccccceEEEEEEccCCceeccCCCceeEEEecccc---cce
Confidence 78889998 44 444333 3468899999885 4899999999999999999999999999999999998653 233
Q ss_pred EEeccCCCeEEE--ccCCCeEEEEecCCeEEEEeCCC-ceeeeecCCCeEEEEEe-CCEEEE-EECCCcEEEEEccCCce
Q 001455 874 EVIATKEPIRKL--DTYGKTIFASTQGHRMKVIDSSR-TLKDIYRSKGIKSMSVV-QGKIYI-GCMDSSIQELAVSNNVE 948 (1074)
Q Consensus 874 ~~~~h~~~V~s~--s~dg~~L~sgS~DgtI~VWDl~~-~l~~l~~~~~V~sLa~s-dgkLla-Gs~DgsI~IwDl~tg~~ 948 (1074)
....|.+.|.|+ .|-...+++++-+ ..-+|.... .+........+.+.+|. ||++++ |-.+|+|.+-+-.....
T Consensus 88 LkYSH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek 166 (1081)
T KOG1538|consen 88 LKYSHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEK 166 (1081)
T ss_pred eeeccCCeeeEeecCchHHHhhhcchh-hccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcc
Confidence 456788888875 4666778777653 356787763 33333345568888997 888665 88999999987665555
Q ss_pred eeeccccccccCCCCCeEEEEEcCCce-----EEEEEecCCCeEEEEECCCCCeEEEccCCCCCeEEEEEecCCCEEEEE
Q 001455 949 REIKAPFKSWRLQSKPINSLVVYKDWL-----YSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYN 1023 (1074)
Q Consensus 949 ~~i~~~~r~~~~h~~~I~sL~~spd~i-----~las~S~dDgtI~IWDl~t~~~i~~l~gH~~~VtsLafSPDG~~LaSG 1023 (1074)
..+..| .+.+.+|.+++++|... .++... .+.++.+|.+.... +..-..-.-...++.+-|+|.|+..|
T Consensus 167 ~~I~Rp----gg~Nspiwsi~~~p~sg~G~~di~aV~D-W~qTLSFy~LsG~~-Igk~r~L~FdP~CisYf~NGEy~LiG 240 (1081)
T KOG1538|consen 167 VKIERP----GGSNSPIWSICWNPSSGEGRNDILAVAD-WGQTLSFYQLSGKQ-IGKDRALNFDPCCISYFTNGEYILLG 240 (1081)
T ss_pred eEEeCC----CCCCCCceEEEecCCCCCCccceEEEEe-ccceeEEEEeccee-ecccccCCCCchhheeccCCcEEEEc
Confidence 555433 45688999999998632 111111 23556666654332 22111122245688889999999999
Q ss_pred ECCCcEEEEECCCCcEEEEEeCC-CCeEEEE--EcCCEEEEEECCCcEEEEec
Q 001455 1024 SSASSLQIWLRGTQQKVGRISAG-SKITSLL--TANDIVLCGTETGLIKGWIP 1073 (1074)
Q Consensus 1024 S~DGtIrIWDl~tg~~l~tL~~h-s~VtsLa--~dg~~LaSGs~DG~IrIWdi 1073 (1074)
|.|+.+++|- +.|-.+.++... ++|+.++ +++++++.|+.||+|--|++
T Consensus 241 Gsdk~L~~fT-R~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl 292 (1081)
T KOG1538|consen 241 GSDKQLSLFT-RDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNL 292 (1081)
T ss_pred cCCCceEEEe-ecCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhh
Confidence 9999999996 566677777544 6699876 67889999999999988775
No 153
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.60 E-value=2.1e-14 Score=157.91 Aligned_cols=215 Identities=15% Similarity=0.159 Sum_probs=156.5
Q ss_pred eccCCCCEEEEEEcCCCC--EEEEEeCCCeEEEEEccCCceEEEEEeccCCCeEEEccCCCeEEEEecCCeEEEEeCCCc
Q 001455 832 VKEHRKAVTSFSLFEPGE--SLLSGSADKTIGVWQMVQRKLELIEVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSSRT 909 (1074)
Q Consensus 832 l~gH~~~VtsLafSpdg~--~LaSGS~DGtIrIWDl~tg~~~~~~~~~h~~~V~s~s~dg~~L~sgS~DgtI~VWDl~~~ 909 (1074)
.-+|.+.++.+.-++-++ +.++=+..|.|.|||+...- .+++..+-.+ .-+. .+.
T Consensus 147 ~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l-------------~~l~~~~~~~-~~s~---------~~P 203 (440)
T KOG0302|consen 147 SIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHL-------------NALSEPGLEV-KDSE---------FRP 203 (440)
T ss_pred ccccccccceeeecccCCcceeeeecccCcEEEEEchhhh-------------hhhcCccccc-cccc---------cCc
Confidence 347888888888777654 46667789999999985421 1111000000 0000 012
Q ss_pred eeeeecCC-CeEEEEEe---CCEEEEEECCCcEEEEEccCCceeeeccccccccCCCCCeEEEEEcCCceEEEEEecCCC
Q 001455 910 LKDIYRSK-GIKSMSVV---QGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGS 985 (1074)
Q Consensus 910 l~~l~~~~-~V~sLa~s---dgkLlaGs~DgsI~IwDl~tg~~~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S~dDg 985 (1074)
+.++..++ .-..+.|+ .|.+++|..-+.|++|...+|....-. +.+.+|...|..++++|....+++.++-||
T Consensus 204 l~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~---~Pf~gH~~SVEDLqWSptE~~vfaScS~Dg 280 (440)
T KOG0302|consen 204 LFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQ---RPFTGHTKSVEDLQWSPTEDGVFASCSCDG 280 (440)
T ss_pred eEEecccCccceeeecccccccccccCccccceEeeeeccCceeecC---ccccccccchhhhccCCccCceEEeeecCc
Confidence 22222222 23456665 677888888899999999998776554 445679999999999987655544444789
Q ss_pred eEEEEECCCC---CeEEEccCCCCCeEEEEEecCCCEEEEEECCCcEEEEECC---CCcEEEEEeCC-CCeEEEEEc---
Q 001455 986 NIKEWRRHRK---PQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRG---TQQKVGRISAG-SKITSLLTA--- 1055 (1074)
Q Consensus 986 tI~IWDl~t~---~~i~~l~gH~~~VtsLafSPDG~~LaSGS~DGtIrIWDl~---tg~~l~tL~~h-s~VtsLa~d--- 1055 (1074)
+|+|||++.+ .++.+ +.|.+.|+-|.|+.+..+||+|+.||+++|||++ .++++.+|+.| ++|+++.|+
T Consensus 281 sIrIWDiRs~~~~~~~~~-kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e 359 (440)
T KOG0302|consen 281 SIRIWDIRSGPKKAAVST-KAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHE 359 (440)
T ss_pred eEEEEEecCCCccceeEe-eccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEecccc
Confidence 9999999887 34443 7899999999999988899999999999999965 46789999999 679999998
Q ss_pred CCEEEEEECCCcEEEEec
Q 001455 1056 NDIVLCGTETGLIKGWIP 1073 (1074)
Q Consensus 1056 g~~LaSGs~DG~IrIWdi 1073 (1074)
...|+++|.|.+|.+||+
T Consensus 360 ~s~iaasg~D~QitiWDl 377 (440)
T KOG0302|consen 360 DSVIAASGEDNQITIWDL 377 (440)
T ss_pred CceEEeccCCCcEEEEEe
Confidence 449999999999999996
No 154
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.60 E-value=9.7e-14 Score=155.60 Aligned_cols=230 Identities=12% Similarity=0.198 Sum_probs=166.1
Q ss_pred EEEEEEcC-------CCCEEEEEeCCCeEEEEEccCCceE--EEE------------------EeccCCCeEEEccC---
Q 001455 839 VTSFSLFE-------PGESLLSGSADKTIGVWQMVQRKLE--LIE------------------VIATKEPIRKLDTY--- 888 (1074)
Q Consensus 839 VtsLafSp-------dg~~LaSGS~DGtIrIWDl~tg~~~--~~~------------------~~~h~~~V~s~s~d--- 888 (1074)
-.|+.|.. -|+++|.|+.|..|.|||+.--... +.. ..+|+..|..++++
T Consensus 176 PLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~ 255 (463)
T KOG0270|consen 176 PLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNF 255 (463)
T ss_pred chhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhcccc
Confidence 35777753 3568999999999999998632211 111 11355556555544
Q ss_pred CCeEEEEecCCeEEEEeCC--Cceeeee-cCCCeEEEEEe--CCE-EEEEECCCcEEEEEccCCceeeeccccccccCCC
Q 001455 889 GKTIFASTQGHRMKVIDSS--RTLKDIY-RSKGIKSMSVV--QGK-IYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQS 962 (1074)
Q Consensus 889 g~~L~sgS~DgtI~VWDl~--~~l~~l~-~~~~V~sLa~s--dgk-LlaGs~DgsI~IwDl~tg~~~~i~~~~r~~~~h~ 962 (1074)
.+.|++|+.|.+|++||+. ++..++. +++.|.++.|. ... +++|+.|++|.+.|.+...... ..|.. .
T Consensus 256 ~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~-----~~wk~-~ 329 (463)
T KOG0270|consen 256 RNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSG-----KEWKF-D 329 (463)
T ss_pred ceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccC-----ceEEe-c
Confidence 3489999999999999998 3444444 46679999995 333 8889999999999998522111 12222 5
Q ss_pred CCeEEEEEcCCceEEEEEecCCCeEEEEECCC-CCeEEEccCCCCCeEEEEEecC-CCEEEEEECCCcEEEEECCCCcE-
Q 001455 963 KPINSLVVYKDWLYSASSSVEGSNIKEWRRHR-KPQISIAPEKGTTIQAMAVVED-FIYLNYNSSASSLQIWLRGTQQK- 1039 (1074)
Q Consensus 963 ~~I~sL~~spd~i~las~S~dDgtI~IWDl~t-~~~i~~l~gH~~~VtsLafSPD-G~~LaSGS~DGtIrIWDl~tg~~- 1039 (1074)
..|-.+.+++.....+-.+.+||+++-+|++. ++++.++..|.++|.++++++. -.+++|+|.|++|++|++..-.+
T Consensus 330 g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~ 409 (463)
T KOG0270|consen 330 GEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPK 409 (463)
T ss_pred cceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCc
Confidence 67888999887766665666999999999765 5889999999999999999874 45789999999999999765443
Q ss_pred -EEEEeCC-CCeEEEEEcCC---EEEEEECCCcEEEEecC
Q 001455 1040 -VGRISAG-SKITSLLTAND---IVLCGTETGLIKGWIPL 1074 (1074)
Q Consensus 1040 -l~tL~~h-s~VtsLa~dg~---~LaSGs~DG~IrIWdil 1074 (1074)
+..-... +...|+++++. +++.||..+.++|||+.
T Consensus 410 ~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~ 449 (463)
T KOG0270|consen 410 SVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIF 449 (463)
T ss_pred ccccccccccceeecccCCCcceEEEecCccceEEEeecc
Confidence 2221111 33566777644 88899999999999974
No 155
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.60 E-value=5.6e-14 Score=153.27 Aligned_cols=262 Identities=12% Similarity=0.154 Sum_probs=179.9
Q ss_pred CEEEEEECCCcEEEEECCCCCeeEEEEeccCCCCEEEEEEcCC--CCEEEEEeCCCeEEEEEccCCceEEEEEe-ccC-C
Q 001455 805 GLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEP--GESLLSGSADKTIGVWQMVQRKLELIEVI-ATK-E 880 (1074)
Q Consensus 805 ~~LaSGs~DGtVrIWDl~t~~~~~i~tl~gH~~~VtsLafSpd--g~~LaSGS~DGtIrIWDl~tg~~~~~~~~-~h~-~ 880 (1074)
..+|++.+.|+|++||..+++. +..+++|...++.+.|..+ ...+.+|+.||+|++||++.......... ++. .
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~--l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~ 118 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQL--LEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGT 118 (376)
T ss_pred eeEEEEecCCeEEEEeccchhh--hheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCC
Confidence 4689999999999999998754 7889999999999999873 45589999999999999998654333322 333 4
Q ss_pred CeEEEcc--CCCeEEEEe----cCCeEEEEeCCCcee---eee--cCCCeEEEEEe---CCEEEEEECCCcEEEEEccCC
Q 001455 881 PIRKLDT--YGKTIFAST----QGHRMKVIDSSRTLK---DIY--RSKGIKSMSVV---QGKIYIGCMDSSIQELAVSNN 946 (1074)
Q Consensus 881 ~V~s~s~--dg~~L~sgS----~DgtI~VWDl~~~l~---~l~--~~~~V~sLa~s---dgkLlaGs~DgsI~IwDl~tg 946 (1074)
+..+|.. .++.+++|+ .+-.|.+||++...+ .+. ++..|+++.|. .+.+++|+.||.|.+||+...
T Consensus 119 ~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d 198 (376)
T KOG1188|consen 119 PFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKD 198 (376)
T ss_pred cceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCC
Confidence 6777775 566777775 345899999984333 232 35679999994 455888999999999999874
Q ss_pred ceeeeccccccccCCCCCeEEEEEcCCc-eEEEEEecCCCeEEEEECCCCCeEEEccCC------------CCCeEEEEE
Q 001455 947 VEREIKAPFKSWRLQSKPINSLVVYKDW-LYSASSSVEGSNIKEWRRHRKPQISIAPEK------------GTTIQAMAV 1013 (1074)
Q Consensus 947 ~~~~i~~~~r~~~~h~~~I~sL~~spd~-i~las~S~dDgtI~IWDl~t~~~i~~l~gH------------~~~VtsLaf 1013 (1074)
..-.. ....-.+...|..+.|+.++ ..+.+.+ ...+..+|+++.+.....+... ...+.....
T Consensus 199 ~EeDa---L~~viN~~sSI~~igw~~~~ykrI~clT-H~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~ 274 (376)
T KOG1188|consen 199 NEEDA---LLHVINHGSSIHLIGWLSKKYKRIMCLT-HMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHS 274 (376)
T ss_pred cchhh---HHHhhcccceeeeeeeecCCcceEEEEE-ccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeeccc
Confidence 32110 01112457789999998776 1222222 4578999999877654433221 012222222
Q ss_pred ecCCCEEEEEEC-CCcEEEEECC------CCcEEEEEeCCCC--eEEEEEc--CCEEEEEECCCcEEEEe
Q 001455 1014 VEDFIYLNYNSS-ASSLQIWLRG------TQQKVGRISAGSK--ITSLLTA--NDIVLCGTETGLIKGWI 1072 (1074)
Q Consensus 1014 SPDG~~LaSGS~-DGtIrIWDl~------tg~~l~tL~~hs~--VtsLa~d--g~~LaSGs~DG~IrIWd 1072 (1074)
..++.+.+.++. -|...++-+. .++.+..+.+|+. |+++.|+ +.+++|||.||.+.+|.
T Consensus 275 ~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk 344 (376)
T KOG1188|consen 275 PGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWK 344 (376)
T ss_pred CCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEe
Confidence 235555555554 5666665432 3444667777644 8888887 77999999999999997
No 156
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.59 E-value=1.2e-14 Score=163.84 Aligned_cols=231 Identities=13% Similarity=0.188 Sum_probs=185.3
Q ss_pred CCcEEEEEEe--CCEEEEEECCCcEEEEECCCCCeeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEccCCceE
Q 001455 794 SGAVTALIYY--KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLE 871 (1074)
Q Consensus 794 ~~~VtsLafS--~~~LaSGs~DGtVrIWDl~t~~~~~i~tl~gH~~~VtsLafSpdg~~LaSGS~DGtIrIWDl~tg~~~ 871 (1074)
...|.++... +..|++||.-.++.|||+.........++....-...+++.+||.+..+++..||.|.|||+.+.. .
T Consensus 465 dnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~-~ 543 (705)
T KOG0639|consen 465 DNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQT-L 543 (705)
T ss_pred ccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccce-e
Confidence 4567777777 457999999999999999987665445555555567889999999999999999999999998765 4
Q ss_pred EEEEeccCCCeEEE--ccCCCeEEEEecCCeEEEEeCCCcee--eeecCCCeEEEEEe-CCE-EEEEECCCcEEEEEccC
Q 001455 872 LIEVIATKEPIRKL--DTYGKTIFASTQGHRMKVIDSSRTLK--DIYRSKGIKSMSVV-QGK-IYIGCMDSSIQELAVSN 945 (1074)
Q Consensus 872 ~~~~~~h~~~V~s~--s~dg~~L~sgS~DgtI~VWDl~~~l~--~l~~~~~V~sLa~s-dgk-LlaGs~DgsI~IwDl~t 945 (1074)
...+.+|.+.+.|+ +.+|..|++|+-|++|+.||++...+ .......|.++.+. .+. ++.|-.++.+.+.....
T Consensus 544 VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~sk 623 (705)
T KOG0639|consen 544 VRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSK 623 (705)
T ss_pred eecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEecCC
Confidence 45677899988875 67899999999999999999984433 33345668888885 555 66688899988887765
Q ss_pred CceeeeccccccccCCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEccCCCCCeEEEEEecCCCEEEEEEC
Q 001455 946 NVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSS 1025 (1074)
Q Consensus 946 g~~~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S~dDgtI~IWDl~t~~~i~~l~gH~~~VtsLafSPDG~~LaSGS~ 1025 (1074)
.+.. .+..|...|.++.|.+-|.+.++.+ .|+.+..|..-.|..+.... ....|.++..|.|.+||+|||.
T Consensus 624 p~ky-------qlhlheScVLSlKFa~cGkwfvStG-kDnlLnawrtPyGasiFqsk-E~SsVlsCDIS~ddkyIVTGSG 694 (705)
T KOG0639|consen 624 PEKY-------QLHLHESCVLSLKFAYCGKWFVSTG-KDNLLNAWRTPYGASIFQSK-ESSSVLSCDISFDDKYIVTGSG 694 (705)
T ss_pred ccce-------eecccccEEEEEEecccCceeeecC-chhhhhhccCccccceeecc-ccCcceeeeeccCceEEEecCC
Confidence 3332 2356789999999999999999887 77889999988887665543 4567999999999999999999
Q ss_pred CCcEEEEEC
Q 001455 1026 ASSLQIWLR 1034 (1074)
Q Consensus 1026 DGtIrIWDl 1034 (1074)
|....||.+
T Consensus 695 dkkATVYeV 703 (705)
T KOG0639|consen 695 DKKATVYEV 703 (705)
T ss_pred CcceEEEEE
Confidence 988888763
No 157
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.57 E-value=8.7e-14 Score=159.95 Aligned_cols=234 Identities=14% Similarity=0.156 Sum_probs=174.7
Q ss_pred EEEeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEccCCceEEEEEeccCCCeEEE--ccCCC-eEEEEecCCeEE---
Q 001455 829 VWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATKEPIRKL--DTYGK-TIFASTQGHRMK--- 902 (1074)
Q Consensus 829 i~tl~gH~~~VtsLafSpdg~~LaSGS~DGtIrIWDl~tg~~~~~~~~~h~~~V~s~--s~dg~-~L~sgS~DgtI~--- 902 (1074)
...+.||++.|.++...|.|.+|++|+.||+|+||.+.+|+++.... ..+.|.++ .|.++ .++++..+..+.
T Consensus 393 ~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~--~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivn 470 (733)
T KOG0650|consen 393 ALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ--FDSEIRSVAWNPLSDLCVLAVAVGECVLIVN 470 (733)
T ss_pred eeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe--ecceeEEEEecCCCCceeEEEEecCceEEeC
Confidence 35578999999999999999999999999999999999998765443 44456654 44443 222222222233
Q ss_pred ------------------------------EEeCC-------CceeeeecCCCeEEEEEe-CCE-EEEE---ECCCcEEE
Q 001455 903 ------------------------------VIDSS-------RTLKDIYRSKGIKSMSVV-QGK-IYIG---CMDSSIQE 940 (1074)
Q Consensus 903 ------------------------------VWDl~-------~~l~~l~~~~~V~sLa~s-dgk-LlaG---s~DgsI~I 940 (1074)
.|.-. +....+.+.+.|+.+.|. .|. +.+. +....|.|
T Consensus 471 p~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~Vli 550 (733)
T KOG0650|consen 471 PIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLI 550 (733)
T ss_pred ccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEE
Confidence 33322 011233446678889997 665 4432 33467888
Q ss_pred EEccCCceeeeccccccccCCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEccCCCCCeEEEEEecCCCEE
Q 001455 941 LAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYL 1020 (1074)
Q Consensus 941 wDl~tg~~~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S~dDgtI~IWDl~t~~~i~~l~gH~~~VtsLafSPDG~~L 1020 (1074)
+++....... .+....+.+..+.|||...+++.++ ...|++||+..+..++.+.....+|.+++.+|.|.-|
T Consensus 551 HQLSK~~sQ~------PF~kskG~vq~v~FHPs~p~lfVaT--q~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnl 622 (733)
T KOG0650|consen 551 HQLSKRKSQS------PFRKSKGLVQRVKFHPSKPYLFVAT--QRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNL 622 (733)
T ss_pred EecccccccC------chhhcCCceeEEEecCCCceEEEEe--ccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeE
Confidence 9887744321 2344577899999999988887765 5689999998888887777777889999999999999
Q ss_pred EEEECCCcEEEEECCCC-cEEEEEeCCCC-eEEEEEcCC--EEEEEECCCcEEEEe
Q 001455 1021 NYNSSASSLQIWLRGTQ-QKVGRISAGSK-ITSLLTAND--IVLCGTETGLIKGWI 1072 (1074)
Q Consensus 1021 aSGS~DGtIrIWDl~tg-~~l~tL~~hs~-VtsLa~dg~--~LaSGs~DG~IrIWd 1072 (1074)
+.|+.|+.+..+|+.-+ ++.+++..|.. |++++|+++ .+++|+.||++.|+-
T Consensus 623 i~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfh 678 (733)
T KOG0650|consen 623 ILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFH 678 (733)
T ss_pred EEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEe
Confidence 99999999999998654 56788888854 999999977 899999999999873
No 158
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.56 E-value=3.5e-12 Score=145.40 Aligned_cols=266 Identities=11% Similarity=0.150 Sum_probs=169.8
Q ss_pred EEEEECCCcEEEEECCC-CCeeEEEEeccCCCCEEEEEEcCCCCEEEEEe-CCCeEEEEEcc-CCceEEEEEeccC-CC-
Q 001455 807 LCSGFSDGSIKMWDIKK-QSAMLVWDVKEHRKAVTSFSLFEPGESLLSGS-ADKTIGVWQMV-QRKLELIEVIATK-EP- 881 (1074)
Q Consensus 807 LaSGs~DGtVrIWDl~t-~~~~~i~tl~gH~~~VtsLafSpdg~~LaSGS-~DGtIrIWDl~-tg~~~~~~~~~h~-~~- 881 (1074)
+++...|+.|++||+.+ ++...+..+. +.+....++++|++++|++++ .++.|.+|++. ++........... .+
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~ 83 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPT 83 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCce
Confidence 34557799999999964 4444555553 346678899999999987654 58889999997 3444322222222 22
Q ss_pred eEEEccCCCeEEEEec-CCeEEEEeCCCc------eeeeecCCCeEEEEEe-CCE-EEE-EECCCcEEEEEccCCceeee
Q 001455 882 IRKLDTYGKTIFASTQ-GHRMKVIDSSRT------LKDIYRSKGIKSMSVV-QGK-IYI-GCMDSSIQELAVSNNVEREI 951 (1074)
Q Consensus 882 V~s~s~dg~~L~sgS~-DgtI~VWDl~~~------l~~l~~~~~V~sLa~s-dgk-Lla-Gs~DgsI~IwDl~tg~~~~i 951 (1074)
-..++++++++++++. ++.|.+|+++.. ...........+++++ +|+ +++ ...++.|.+||+.+......
T Consensus 84 ~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~ 163 (330)
T PRK11028 84 HISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVA 163 (330)
T ss_pred EEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccc
Confidence 2357899998888774 789999998621 1112223346677775 665 544 55679999999976322110
Q ss_pred ccccccccCCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCC--CC--eEEEccC------CCCCeEEEEEecCCCEEE
Q 001455 952 KAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHR--KP--QISIAPE------KGTTIQAMAVVEDFIYLN 1021 (1074)
Q Consensus 952 ~~~~r~~~~h~~~I~sL~~spd~i~las~S~dDgtI~IWDl~t--~~--~i~~l~g------H~~~VtsLafSPDG~~La 1021 (1074)
......-...+.....+.++|++.++.+....+++|.+|+++. +. .+..+.. +......+.++|||++++
T Consensus 164 ~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~ly 243 (330)
T PRK11028 164 QEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLY 243 (330)
T ss_pred cCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEE
Confidence 0000000011344678999999999887775688999999863 33 2332221 112334688999999999
Q ss_pred EEE-CCCcEEEEECCCCc----EEEEEeCCCCeEEEE--EcCCEEEEEEC-CCcEEEEec
Q 001455 1022 YNS-SASSLQIWLRGTQQ----KVGRISAGSKITSLL--TANDIVLCGTE-TGLIKGWIP 1073 (1074)
Q Consensus 1022 SGS-~DGtIrIWDl~tg~----~l~tL~~hs~VtsLa--~dg~~LaSGs~-DG~IrIWdi 1073 (1074)
++. .++.|.+|++.... .+.....+.....+. ++|++|++++. +++|.+|++
T Consensus 244 v~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~ 303 (330)
T PRK11028 244 ACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEI 303 (330)
T ss_pred EecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEE
Confidence 886 47899999985433 233333222233444 56888887665 899999964
No 159
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.54 E-value=4.8e-13 Score=147.10 Aligned_cols=278 Identities=13% Similarity=0.157 Sum_probs=192.8
Q ss_pred CCCCcEEEEEEe--CCEEEEEECCCcEEEEECCCC----CeeEEEEec-cCCCCEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 001455 792 KCSGAVTALIYY--KGLLCSGFSDGSIKMWDIKKQ----SAMLVWDVK-EHRKAVTSFSLFEPGESLLSGSADKTIGVWQ 864 (1074)
Q Consensus 792 gH~~~VtsLafS--~~~LaSGs~DGtVrIWDl~t~----~~~~i~tl~-gH~~~VtsLafSpdg~~LaSGS~DGtIrIWD 864 (1074)
+|.+-|+++.|+ +.+|++||.|..+++|+++.. ..+++.... .|.+.|.|++|......+++|+.+++|...|
T Consensus 54 ~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HD 133 (609)
T KOG4227|consen 54 EHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHD 133 (609)
T ss_pred hhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeee
Confidence 899999999999 568999999999999998631 112333332 4558999999999999999999999999999
Q ss_pred ccCCceEEEEEeccCC---CeEEE--ccCCCeEEEEecCCeEEEEeCCCce---eee-e--cCCCeEEEEEe--CCE-EE
Q 001455 865 MVQRKLELIEVIATKE---PIRKL--DTYGKTIFASTQGHRMKVIDSSRTL---KDI-Y--RSKGIKSMSVV--QGK-IY 930 (1074)
Q Consensus 865 l~tg~~~~~~~~~h~~---~V~s~--s~dg~~L~sgS~DgtI~VWDl~~~l---~~l-~--~~~~V~sLa~s--dgk-Ll 930 (1074)
+.+.+.+. +..|.. .|+.+ +|..+.+++.+.++.|.+||.+... ..+ . ..+...++.|. ... ++
T Consensus 134 iEt~qsi~--V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~ 211 (609)
T KOG4227|consen 134 IETKQSIY--VANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALIL 211 (609)
T ss_pred cccceeee--eecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEE
Confidence 99876543 333433 77765 5777899999999999999987322 111 1 13445666674 333 55
Q ss_pred EEECCCcEEEEEccCCceeeecc-ccccccCCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEccCCCC---
Q 001455 931 IGCMDSSIQELAVSNNVEREIKA-PFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGT--- 1006 (1074)
Q Consensus 931 aGs~DgsI~IwDl~tg~~~~i~~-~~r~~~~h~~~I~sL~~spd~i~las~S~dDgtI~IWDl~t~~~i~~l~gH~~--- 1006 (1074)
+.+..+-+-+||.+......++. ....+......-.+..|+|+|..+.+.- .+..-.+||+.+..+......|..
T Consensus 212 ~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiR-R~~~P~~~D~~S~R~~V~k~D~N~~GY 290 (609)
T KOG4227|consen 212 VNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIR-RGKCPLYFDFISQRCFVLKSDHNPNGY 290 (609)
T ss_pred eccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhh-ccCCCEEeeeecccceeEeccCCCCcc
Confidence 67888889999998744322211 1111112233346678888887776554 333456778766554433333332
Q ss_pred ----CeEEEEEecCCCEEEEEECCCcEEEEECCC----------C-------------cEEEEEeCCCC-eEEEEEc--C
Q 001455 1007 ----TIQAMAVVEDFIYLNYNSSASSLQIWLRGT----------Q-------------QKVGRISAGSK-ITSLLTA--N 1056 (1074)
Q Consensus 1007 ----~VtsLafSPDG~~LaSGS~DGtIrIWDl~t----------g-------------~~l~tL~~hs~-VtsLa~d--g 1056 (1074)
.+.+++|..|.. +++|+.+-.|++|.+.. | +.+..+++|.. ++.+.|+ .
T Consensus 291 ~N~~T~KS~~F~~D~~-v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~ 369 (609)
T KOG4227|consen 291 CNIKTIKSMTFIDDYT-VATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHN 369 (609)
T ss_pred eeeeeeeeeeeeccee-eeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecCCc
Confidence 566788876554 99999999999997532 1 12456778855 6677777 4
Q ss_pred CEEEEEECCCcEEEEec
Q 001455 1057 DIVLCGTETGLIKGWIP 1073 (1074)
Q Consensus 1057 ~~LaSGs~DG~IrIWdi 1073 (1074)
.+|++.|..+.+++|.+
T Consensus 370 ~~l~SSGVE~~~KlWS~ 386 (609)
T KOG4227|consen 370 NLLVSSGVENSFKLWSD 386 (609)
T ss_pred ceEeccchhhheecccc
Confidence 58889999999999986
No 160
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.54 E-value=1.5e-13 Score=158.05 Aligned_cols=139 Identities=14% Similarity=0.049 Sum_probs=105.6
Q ss_pred EEEEEECCCcEEEEEccCCce-eeeccccccccCCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEccCCCC
Q 001455 928 KIYIGCMDSSIQELAVSNNVE-REIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGT 1006 (1074)
Q Consensus 928 kLlaGs~DgsI~IwDl~tg~~-~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S~dDgtI~IWDl~t~~~i~~l~gH~~ 1006 (1074)
+++.++.||.|++|.+..+.. .....|...+..|...|+++.|||-..-++..+..|-+|++||+.++.....+.+|.+
T Consensus 642 rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtd 721 (1012)
T KOG1445|consen 642 RLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTD 721 (1012)
T ss_pred HeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcC
Confidence 355566689999998876543 2233455677889999999999986543333334688999999999998889999999
Q ss_pred CeEEEEEecCCCEEEEEECCCcEEEEECCCCcE-EEEEeCC--CC--eEEEEEcCCEEEEEECCC
Q 001455 1007 TIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQK-VGRISAG--SK--ITSLLTANDIVLCGTETG 1066 (1074)
Q Consensus 1007 ~VtsLafSPDG~~LaSGS~DGtIrIWDl~tg~~-l~tL~~h--s~--VtsLa~dg~~LaSGs~DG 1066 (1074)
.|.+++|||||+.+|+.+.||+|++|+.++++. ++.-.+. +. =--++.+|+++++.|.|.
T Consensus 722 qIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk 786 (1012)
T KOG1445|consen 722 QIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDK 786 (1012)
T ss_pred ceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccc
Confidence 999999999999999999999999999766543 5444333 11 111456799888888775
No 161
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.54 E-value=8.7e-13 Score=157.91 Aligned_cols=258 Identities=11% Similarity=0.135 Sum_probs=187.2
Q ss_pred CCcEEEEECCCCCeeEEEEeccCCCCEEEEEEcCCCCE-EEEEeCCCeEEEEEccCCce-----EEEEEeccCCCeEEE-
Q 001455 813 DGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGES-LLSGSADKTIGVWQMVQRKL-----ELIEVIATKEPIRKL- 885 (1074)
Q Consensus 813 DGtVrIWDl~t~~~~~i~tl~gH~~~VtsLafSpdg~~-LaSGS~DGtIrIWDl~tg~~-----~~~~~~~h~~~V~s~- 885 (1074)
++.+.||+++... .+...+ .-...|+|++|+|.... ++.|..+|.|.+||++.+.. .......|..++..+
T Consensus 221 ~~~~~vW~~~~p~-~Pe~~~-~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vv 298 (555)
T KOG1587|consen 221 DGVLLVWSLKNPN-TPELVL-ESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVV 298 (555)
T ss_pred CceEEEEecCCCC-CceEEE-ecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEE
Confidence 3579999999872 333444 34688999999997766 77888999999999987654 233445677888764
Q ss_pred ---ccCCCeEEEEecCCeEEEEeCCCcee---------------eeecCCCeEEEEEe---CCEEEEEECCCcEEEEEcc
Q 001455 886 ---DTYGKTIFASTQGHRMKVIDSSRTLK---------------DIYRSKGIKSMSVV---QGKIYIGCMDSSIQELAVS 944 (1074)
Q Consensus 886 ---s~dg~~L~sgS~DgtI~VWDl~~~l~---------------~l~~~~~V~sLa~s---dgkLlaGs~DgsI~IwDl~ 944 (1074)
..++..+++++.||.|..|+++.... .......++++.|. ..+++.|+.+|.|.--+-.
T Consensus 299 W~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~ 378 (555)
T KOG1587|consen 299 WLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRK 378 (555)
T ss_pred EeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEecc
Confidence 24446799999999999999872111 11123458889995 4558899999999874443
Q ss_pred CCcee--eeccccccccCCCCCeEEEEEcCCceEEEEEecCCCeEEEEECC-CCCeEEEccCCCCCeEEEEEecCC-CEE
Q 001455 945 NNVER--EIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRH-RKPQISIAPEKGTTIQAMAVVEDF-IYL 1020 (1074)
Q Consensus 945 tg~~~--~i~~~~r~~~~h~~~I~sL~~spd~i~las~S~dDgtI~IWDl~-t~~~i~~l~gH~~~VtsLafSPDG-~~L 1020 (1074)
..+.. ..+.+...+..|..+|+++.++|-+...+..+ .|.+++||... ...++..+..+...|++++|||.. ..+
T Consensus 379 g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~-gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF 457 (555)
T KOG1587|consen 379 GYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSV-GDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVF 457 (555)
T ss_pred CCcccccccccccccccccCcceEeeecCCCccceeeee-ccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEE
Confidence 32221 23344455677889999999998766555444 37899999976 555566677788889999999965 567
Q ss_pred EEEECCCcEEEEECC--CCcEEEEEeCCCC-eEEEEEc--CCEEEEEECCCcEEEEec
Q 001455 1021 NYNSSASSLQIWLRG--TQQKVGRISAGSK-ITSLLTA--NDIVLCGTETGLIKGWIP 1073 (1074)
Q Consensus 1021 aSGS~DGtIrIWDl~--tg~~l~tL~~hs~-VtsLa~d--g~~LaSGs~DG~IrIWdi 1073 (1074)
+++..||.+.+||+. +..++.+...+.. .+.+.|+ |+.|+.|+..|++++|+.
T Consensus 458 ~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l 515 (555)
T KOG1587|consen 458 ATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKL 515 (555)
T ss_pred EEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEc
Confidence 888889999999964 4455666665555 4445554 789999999999999975
No 162
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.54 E-value=1.7e-14 Score=170.24 Aligned_cols=262 Identities=11% Similarity=0.141 Sum_probs=193.8
Q ss_pred CCCCcEEEEEEe--CCEEEEEECCCcEEEEECCCCCeeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEccCCc
Q 001455 792 KCSGAVTALIYY--KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRK 869 (1074)
Q Consensus 792 gH~~~VtsLafS--~~~LaSGs~DGtVrIWDl~t~~~~~i~tl~gH~~~VtsLafSpdg~~LaSGS~DGtIrIWDl~tg~ 869 (1074)
||...|+|..|. +.++++|+.|..|+||.+++..+ .....||.+.|+.++.+.+...++++|.|..|++|.+.++.
T Consensus 188 gH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~--lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~ 265 (1113)
T KOG0644|consen 188 GHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARC--LASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGA 265 (1113)
T ss_pred hhhhheeeeeeccccceEeecCccceeeeeeccchhh--hccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCc
Confidence 899999999999 77899999999999999988754 78899999999999999999999999999999999999986
Q ss_pred eEEEEEeccCCCeEEEccCCCeEEEEecCCeEEEEeCC-Cceeee------ecCCCeEEEEEe-CC-EEEEEECCCcEEE
Q 001455 870 LELIEVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSS-RTLKDI------YRSKGIKSMSVV-QG-KIYIGCMDSSIQE 940 (1074)
Q Consensus 870 ~~~~~~~~h~~~V~s~s~dg~~L~sgS~DgtI~VWDl~-~~l~~l------~~~~~V~sLa~s-dg-kLlaGs~DgsI~I 940 (1074)
.+ ....+|.+.|+++...... +.+.||++++||.+ ...... ....-+.++.+. ++ .+.+|+.|+.-..
T Consensus 266 pv-svLrghtgavtaiafsP~~--sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n 342 (1113)
T KOG0644|consen 266 PV-SVLRGHTGAVTAIAFSPRA--SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARN 342 (1113)
T ss_pred hH-HHHhccccceeeeccCccc--cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCccccc
Confidence 53 3456899999987544433 77899999999987 221111 122335555554 33 3778888888877
Q ss_pred EEccCCceeeeccccccccCCCCCeEEEEEcCCc-eEEEEEecCCCeEEEEECCCCCeEEEccCCCCCeEEEEEec-CCC
Q 001455 941 LAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDW-LYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVE-DFI 1018 (1074)
Q Consensus 941 wDl~tg~~~~i~~~~r~~~~h~~~I~sL~~spd~-i~las~S~dDgtI~IWDl~t~~~i~~l~gH~~~VtsLafSP-DG~ 1018 (1074)
|.+..-.. +...+.-+..+.+. .+.++ ...+..+.+|+..+|...+.+.+|...+..+.++| |.+
T Consensus 343 ~e~~~l~~------------~~~~lif~t~ssd~~~~~~~-ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~r 409 (1113)
T KOG0644|consen 343 HEFEQLAW------------RSNLLIFVTRSSDLSSIVVT-ARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPR 409 (1113)
T ss_pred chhhHhhh------------hccceEEEecccccccccee-eeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcH
Confidence 76643111 11111111222121 12222 22456789999999999999999999999999999 556
Q ss_pred EEEEEECCCcEEEEECCCCcEEEEEe-CCCCeEE--EEEcCCEEEEEECCCcEEEE
Q 001455 1019 YLNYNSSASSLQIWLRGTQQKVGRIS-AGSKITS--LLTANDIVLCGTETGLIKGW 1071 (1074)
Q Consensus 1019 ~LaSGS~DGtIrIWDl~tg~~l~tL~-~hs~Vts--La~dg~~LaSGs~DG~IrIW 1071 (1074)
...+++.||.+.|||+-.|.+++.+. +|+++.. ++.+|..++....-|.++|.
T Consensus 410 i~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~ 465 (1113)
T KOG0644|consen 410 IAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYIL 465 (1113)
T ss_pred hhhhccCCCceEeeecccCCcceeeecccceeeccccCCCCceEecCCCCCceEEe
Confidence 66789999999999999998876554 5666444 45557777777777777664
No 163
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.53 E-value=1.3e-12 Score=139.78 Aligned_cols=241 Identities=12% Similarity=0.118 Sum_probs=172.4
Q ss_pred CCCCcEEEEEEe---CCEEEEEECC-------CcEEEEECCCCCe-------eEEEEec-cCCCCEEEEEEcCCCCEEEE
Q 001455 792 KCSGAVTALIYY---KGLLCSGFSD-------GSIKMWDIKKQSA-------MLVWDVK-EHRKAVTSFSLFEPGESLLS 853 (1074)
Q Consensus 792 gH~~~VtsLafS---~~~LaSGs~D-------GtVrIWDl~t~~~-------~~i~tl~-gH~~~VtsLafSpdg~~LaS 853 (1074)
.|-|+|+.++-+ .+.|+|+..| ..+.||.+..... +.+..+. .|-+.|.|+.|.|++..+++
T Consensus 61 h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klas 140 (370)
T KOG1007|consen 61 HHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLAS 140 (370)
T ss_pred cCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEE
Confidence 678999999998 3467777664 2577998864321 1222332 45678999999999999998
Q ss_pred EeCCCeEEEEEccCCceEEEEEeccCCCeEEEcc-CCCeEEEEecCCeEEEEeCCCceeeeecCCCeEEEEEe---CCEE
Q 001455 854 GSADKTIGVWQMVQRKLELIEVIATKEPIRKLDT-YGKTIFASTQGHRMKVIDSSRTLKDIYRSKGIKSMSVV---QGKI 929 (1074)
Q Consensus 854 GS~DGtIrIWDl~tg~~~~~~~~~h~~~V~s~s~-dg~~L~sgS~DgtI~VWDl~~~l~~l~~~~~V~sLa~s---dgkL 929 (1074)
-. |..|.+|++..+......+... .+. ....+.+| +|+ +|..
T Consensus 141 m~-dn~i~l~~l~ess~~vaev~ss------~s~e~~~~ftsg---------------------------~WspHHdgnq 186 (370)
T KOG1007|consen 141 MD-DNNIVLWSLDESSKIVAEVLSS------ESAEMRHSFTSG---------------------------AWSPHHDGNQ 186 (370)
T ss_pred ec-cCceEEEEcccCcchheeeccc------ccccccceeccc---------------------------ccCCCCccce
Confidence 77 8889999998765321111100 000 11112222 232 6677
Q ss_pred EEEECCCcEEEEEccCCceeeeccccccccCCCCCeEEEEEcCCceEEEEEecCCCeEEEEECC-CCCeEEEccCCCCCe
Q 001455 930 YIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRH-RKPQISIAPEKGTTI 1008 (1074)
Q Consensus 930 laGs~DgsI~IwDl~tg~~~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S~dDgtI~IWDl~-t~~~i~~l~gH~~~V 1008 (1074)
++...|++++.||+++..... ..-..|+..+..+.|+|+..+.+....+||.|++||.+ +...++.+.+|..+|
T Consensus 187 v~tt~d~tl~~~D~RT~~~~~-----sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWv 261 (370)
T KOG1007|consen 187 VATTSDSTLQFWDLRTMKKNN-----SIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWV 261 (370)
T ss_pred EEEeCCCcEEEEEccchhhhc-----chhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEE
Confidence 778889999999999744321 22257888999999999988777666699999999965 566789999999999
Q ss_pred EEEEEec-CCCEEEEEECCCcEEEEECCCC-----------------------------cEEEEEeCC-CCeEEEEEc--
Q 001455 1009 QAMAVVE-DFIYLNYNSSASSLQIWLRGTQ-----------------------------QKVGRISAG-SKITSLLTA-- 1055 (1074)
Q Consensus 1009 tsLafSP-DG~~LaSGS~DGtIrIWDl~tg-----------------------------~~l~tL~~h-s~VtsLa~d-- 1055 (1074)
+++.|.| ..++|+|||.|..|.+|...+- ..+.++..| ..|.+++|+
T Consensus 262 W~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsa 341 (370)
T KOG1007|consen 262 WAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSA 341 (370)
T ss_pred EEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccC
Confidence 9999998 5678899999999999963321 113455556 459999997
Q ss_pred -CCEEEEEECCCcEEEE
Q 001455 1056 -NDIVLCGTETGLIKGW 1071 (1074)
Q Consensus 1056 -g~~LaSGs~DG~IrIW 1071 (1074)
+=.+|+-+.||++.|=
T Consensus 342 dPWiFASLSYDGRviIs 358 (370)
T KOG1007|consen 342 DPWIFASLSYDGRVIIS 358 (370)
T ss_pred CCeeEEEeccCceEEee
Confidence 4489999999998773
No 164
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.53 E-value=2.5e-13 Score=152.69 Aligned_cols=242 Identities=13% Similarity=0.093 Sum_probs=184.3
Q ss_pred CCcEEEEEEe--CC-EEEEEECCCcEEEEECCCCCeeEEEEeccCC-CCEEEEEEcCCCCEEEEEeCCCeEEEEEccCCc
Q 001455 794 SGAVTALIYY--KG-LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHR-KAVTSFSLFEPGESLLSGSADKTIGVWQMVQRK 869 (1074)
Q Consensus 794 ~~~VtsLafS--~~-~LaSGs~DGtVrIWDl~t~~~~~i~tl~gH~-~~VtsLafSpdg~~LaSGS~DGtIrIWDl~tg~ 869 (1074)
.-+|.+.+|. |. .++++|.-...+.||+.+.+...+....++. ..+.....++++++|+..|..|.|.+....+++
T Consensus 257 ~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~e 336 (514)
T KOG2055|consen 257 KFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKE 336 (514)
T ss_pred cCccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhh
Confidence 5789999999 44 6999999999999999998776666666665 457788899999999999999999999998887
Q ss_pred eEEEEEeccCCCeEEEccCCCeEEEEecCCeEEEEeCCC--ceeeeecCCCeE--EEEEe-CCE-EEEEECCCcEEEEEc
Q 001455 870 LELIEVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSSR--TLKDIYRSKGIK--SMSVV-QGK-IYIGCMDSSIQELAV 943 (1074)
Q Consensus 870 ~~~~~~~~h~~~V~s~s~dg~~L~sgS~DgtI~VWDl~~--~l~~l~~~~~V~--sLa~s-dgk-LlaGs~DgsI~IwDl 943 (1074)
.+..........-.+|+.++..+++++.+|.|.+||++. +...+...+.|. +++.+ ++. +++|+..|.|.|||.
T Consensus 337 li~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~ 416 (514)
T KOG2055|consen 337 LITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDG 416 (514)
T ss_pred hhheeeeccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEecc
Confidence 654443333322335788999999999999999999983 444455455544 55555 666 556999999999998
Q ss_pred cCCceeeeccccccccCCCCCeEEEEEcCCceEEEEEe-cCCCeEEEEECCCCCeEEEccC---CCCCeEEEEEecCCCE
Q 001455 944 SNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSS-VEGSNIKEWRRHRKPQISIAPE---KGTTIQAMAVVEDFIY 1019 (1074)
Q Consensus 944 ~tg~~~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S-~dDgtI~IWDl~t~~~i~~l~g---H~~~VtsLafSPDG~~ 1019 (1074)
.+........|+..+..-...|+++.|+++...++.++ .....+++-.+.+......+.. .-+.|+|++|||.|.|
T Consensus 417 ~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~ 496 (514)
T KOG2055|consen 417 NSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGY 496 (514)
T ss_pred chhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCce
Confidence 76444444445555555578899999999988776554 2445788888766655554433 3347999999999999
Q ss_pred EEEEECCCcEEEEECC
Q 001455 1020 LNYNSSASSLQIWLRG 1035 (1074)
Q Consensus 1020 LaSGS~DGtIrIWDl~ 1035 (1074)
+|.|..+|.|.+|.+.
T Consensus 497 lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 497 LAVGNEAGRVHLFKLH 512 (514)
T ss_pred EEeecCCCceeeEeec
Confidence 9999999999999864
No 165
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.53 E-value=5.6e-14 Score=158.71 Aligned_cols=281 Identities=16% Similarity=0.201 Sum_probs=204.3
Q ss_pred CCCCCcEEEEEEe--CCEEEEEECCCcEEEEECCCCCeeEEEEeccCCCCEEEEEEcCCC--CEEEEEeCCCeEEEEEcc
Q 001455 791 HKCSGAVTALIYY--KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPG--ESLLSGSADKTIGVWQMV 866 (1074)
Q Consensus 791 ~gH~~~VtsLafS--~~~LaSGs~DGtVrIWDl~t~~~~~i~tl~gH~~~VtsLafSpdg--~~LaSGS~DGtIrIWDl~ 866 (1074)
.+|.|.|..|.|+ +..+++||.|..|.+||...++.. ..-..||...|....|-|.. ..+++++.||.|++=.+.
T Consensus 139 ~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~-l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~ 217 (559)
T KOG1334|consen 139 NKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPK-LSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEIL 217 (559)
T ss_pred cCCCCccceeeecccCceeeccCccceEEeehhhccCcc-cccccccccchhhhhccCCCCCcCceeccccCceeeeeec
Confidence 3899999999999 779999999999999999987643 22235899999888898754 349999999999987664
Q ss_pred C-CceE-EEEEeccCCCeEEE--ccC-CCeEEEEecCCeEEEEeCCCce-----eeeecCC----CeEEEEEe--C-CEE
Q 001455 867 Q-RKLE-LIEVIATKEPIRKL--DTY-GKTIFASTQGHRMKVIDSSRTL-----KDIYRSK----GIKSMSVV--Q-GKI 929 (1074)
Q Consensus 867 t-g~~~-~~~~~~h~~~V~s~--s~d-g~~L~sgS~DgtI~VWDl~~~l-----~~l~~~~----~V~sLa~s--d-gkL 929 (1074)
. +.+. ......|.++|..+ .|+ ...+.+++.|+.+.-+|++... ....... ....+++. + +.+
T Consensus 218 ~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~f 297 (559)
T KOG1334|consen 218 ETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEF 297 (559)
T ss_pred cccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCcccc
Confidence 3 3333 34456788888764 343 4578999999999999987321 1111122 23455553 3 347
Q ss_pred EEEECCCcEEEEEccCCceee------eccccccccCCCCCeEEEEEcCC-ceEEEEEecCCCeEEEEECC--CC-----
Q 001455 930 YIGCMDSSIQELAVSNNVERE------IKAPFKSWRLQSKPINSLVVYKD-WLYSASSSVEGSNIKEWRRH--RK----- 995 (1074)
Q Consensus 930 laGs~DgsI~IwDl~tg~~~~------i~~~~r~~~~h~~~I~sL~~spd-~i~las~S~dDgtI~IWDl~--t~----- 995 (1074)
.+|+.|..+++||.+.-.... .+-|.+........|++++++.+ +..+++.+ |-.|+++... .|
T Consensus 298 aVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYn--De~IYLF~~~~~~G~~p~~ 375 (559)
T KOG1334|consen 298 AVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYN--DEDIYLFNKSMGDGSEPDP 375 (559)
T ss_pred ccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeec--ccceEEeccccccCCCCCC
Confidence 779999999999987633221 11122222234567899999844 55556554 5668888643 22
Q ss_pred -----CeE-EEccCCCC--CeEEEEE-ecCCCEEEEEECCCcEEEEECCCCcEEEEEeCCC-CeEEEEEcCC--EEEEEE
Q 001455 996 -----PQI-SIAPEKGT--TIQAMAV-VEDFIYLNYNSSASSLQIWLRGTQQKVGRISAGS-KITSLLTAND--IVLCGT 1063 (1074)
Q Consensus 996 -----~~i-~~l~gH~~--~VtsLaf-SPDG~~LaSGS~DGtIrIWDl~tg~~l~tL~~hs-~VtsLa~dg~--~LaSGs 1063 (1074)
..+ +.++||.. .|..+-| .|...|+++||.-|.|.||+..+++.+.-+.+.. -|+|+.+++. +||+.|
T Consensus 376 ~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSG 455 (559)
T KOG1334|consen 376 SSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSG 455 (559)
T ss_pred CcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhccC
Confidence 222 33788865 5666665 6899999999999999999999999999998764 4999998866 899999
Q ss_pred CCCcEEEEecC
Q 001455 1064 ETGLIKGWIPL 1074 (1074)
Q Consensus 1064 ~DG~IrIWdil 1074 (1074)
-|..|+||.|+
T Consensus 456 id~DVKIWTP~ 466 (559)
T KOG1334|consen 456 IDHDVKIWTPL 466 (559)
T ss_pred CccceeeecCC
Confidence 99999999874
No 166
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.53 E-value=2.3e-13 Score=147.81 Aligned_cols=243 Identities=12% Similarity=0.134 Sum_probs=171.7
Q ss_pred cCCCCCcEEEEEEe------CCEEEEEECCCcEEEEECCCCCeeEEEEeccCCCCEEEEEEcCCCCE-EEEEeCCCeEEE
Q 001455 790 SHKCSGAVTALIYY------KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGES-LLSGSADKTIGV 862 (1074)
Q Consensus 790 ~~gH~~~VtsLafS------~~~LaSGs~DGtVrIWDl~t~~~~~i~tl~gH~~~VtsLafSpdg~~-LaSGS~DGtIrI 862 (1074)
+..|......++|+ +-++|.||.-|.|+|.|+.++++ ...+.+|.+.|+.+.|+|+... +++||.|.+||+
T Consensus 85 D~d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~--~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRl 162 (385)
T KOG1034|consen 85 DEDHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQC--SKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRL 162 (385)
T ss_pred CCCCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhh--ccceeccCccchhhhcCCCCCcEEEEecCCceEEE
Confidence 44688999999998 22799999999999999998865 6788899999999999998854 889999999999
Q ss_pred EEccCCceEEEE--EeccCCCeEE--EccCCCeEEEEecCCeEEEEeCCC--------ceeeee----------------
Q 001455 863 WQMVQRKLELIE--VIATKEPIRK--LDTYGKTIFASTQGHRMKVIDSSR--------TLKDIY---------------- 914 (1074)
Q Consensus 863 WDl~tg~~~~~~--~~~h~~~V~s--~s~dg~~L~sgS~DgtI~VWDl~~--------~l~~l~---------------- 914 (1074)
|++++..+.... ..+|.+.|.+ |+.+|.++++++.|.++++|++.. ....+.
T Consensus 163 wnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp 242 (385)
T KOG1034|consen 163 WNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFP 242 (385)
T ss_pred EeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccc
Confidence 999999876644 3488899987 568889999999999999999871 110000
Q ss_pred -------cCCCeEEEEEeCCEEEEEECCCcEEEEEcc-CCcee-eeccc------cccccCCCCCeEEE--EEcCCceEE
Q 001455 915 -------RSKGIKSMSVVQGKIYIGCMDSSIQELAVS-NNVER-EIKAP------FKSWRLQSKPINSL--VVYKDWLYS 977 (1074)
Q Consensus 915 -------~~~~V~sLa~sdgkLlaGs~DgsI~IwDl~-tg~~~-~i~~~------~r~~~~h~~~I~sL--~~spd~i~l 977 (1074)
+...|.|+.|-.+.+++-+.++.|..|..- -++.. .++++ ...+......|.-+ ++.+-+..+
T Consensus 243 ~fst~diHrnyVDCvrw~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~l 322 (385)
T KOG1034|consen 243 DFSTTDIHRNYVDCVRWFGDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKML 322 (385)
T ss_pred cccccccccchHHHHHHHhhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHH
Confidence 011233444444557776777899999872 21110 01111 01111222233333 333445555
Q ss_pred EEEecCCCeEEEEECCCCCeE--EEccC--CCCCeEEEEEecCCCEEEEEECCCcEEEEECC
Q 001455 978 ASSSVEGSNIKEWRRHRKPQI--SIAPE--KGTTIQAMAVVEDFIYLNYNSSASSLQIWLRG 1035 (1074)
Q Consensus 978 as~S~dDgtI~IWDl~t~~~i--~~l~g--H~~~VtsLafSPDG~~LaSGS~DGtIrIWDl~ 1035 (1074)
+.+. +.|.|.+||++..+.. .++.. ....|...+||.||.+|+..++|++|.-||.-
T Consensus 323 a~gn-q~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 323 ALGN-QSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred hhcc-CCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 5554 7789999998766542 22221 23479999999999999999999999999853
No 167
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.53 E-value=8.8e-13 Score=159.21 Aligned_cols=270 Identities=15% Similarity=0.192 Sum_probs=185.5
Q ss_pred cEEEEEEe--CCEEEEEECCCcEEEEECCCCCeeEEEEeccC---CCCEEEEEEcCC--CCEEEEEeCCCeEEEEEccCC
Q 001455 796 AVTALIYY--KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEH---RKAVTSFSLFEP--GESLLSGSADKTIGVWQMVQR 868 (1074)
Q Consensus 796 ~VtsLafS--~~~LaSGs~DGtVrIWDl~t~~~~~i~tl~gH---~~~VtsLafSpd--g~~LaSGS~DGtIrIWDl~tg 868 (1074)
+-..+.|+ ...++++...-.|+|||.+.++. ...|..+ ...|+.+.+-.+ ...+++|+.||.||||+--..
T Consensus 1066 ~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~--l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~ 1143 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADDRERIRVWDWEKGRL--LNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYAD 1143 (1387)
T ss_pred CCceeeecCCCceeEEcCCcceEEEEecccCce--eccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccccc
Confidence 44556666 55788888888999999998754 4444433 357888888643 345899999999999964321
Q ss_pred ---ceEEE-EEe---------ccCCCeEEEccCCCeEEEEecCCeEEEEeCCCceee--eec--CCCeEEEEEe--C-CE
Q 001455 869 ---KLELI-EVI---------ATKEPIRKLDTYGKTIFASTQGHRMKVIDSSRTLKD--IYR--SKGIKSMSVV--Q-GK 928 (1074)
Q Consensus 869 ---~~~~~-~~~---------~h~~~V~s~s~dg~~L~sgS~DgtI~VWDl~~~l~~--l~~--~~~V~sLa~s--d-gk 928 (1074)
+.... ... ...+.+..|.....++++++.-..|+|||..+.... +.. ...|+++.-. . +.
T Consensus 1144 ~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~ 1223 (1387)
T KOG1517|consen 1144 KWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNI 1223 (1387)
T ss_pred ccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCce
Confidence 11111 111 111234455555667777777889999999854332 222 3347777664 4 45
Q ss_pred EEEEECCCcEEEEEccCCceeeeccccccccCCCCC--eEEEEEcCCceE-EEEEecCCCeEEEEECCCCCeEEE--ccC
Q 001455 929 IYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKP--INSLVVYKDWLY-SASSSVEGSNIKEWRRHRKPQISI--APE 1003 (1074)
Q Consensus 929 LlaGs~DgsI~IwDl~tg~~~~i~~~~r~~~~h~~~--I~sL~~spd~i~-las~S~dDgtI~IWDl~t~~~i~~--l~g 1003 (1074)
+++|..||.|++||.+..... ..+..|..|... |..+.+.+.|.- +++++ .+|.|++||++....... ...
T Consensus 1224 i~AGfaDGsvRvyD~R~a~~d---s~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs-~~G~I~~~DlR~~~~e~~~~iv~ 1299 (1387)
T KOG1517|consen 1224 IAAGFADGSVRVYDRRMAPPD---SLVCVYREHNDVEPIVHLSLQRQGLGELVSGS-QDGDIQLLDLRMSSKETFLTIVA 1299 (1387)
T ss_pred EEEeecCCceEEeecccCCcc---ccceeecccCCcccceeEEeecCCCcceeeec-cCCeEEEEecccCcccccceeee
Confidence 778999999999999874432 334666777666 999999886655 66666 789999999876432222 222
Q ss_pred C---CCCeEEEEEecCCCEEEEEECCCcEEEEECCCCcEEEEEeCC--------CCeEEEEEcCC--EEEEEECCCcEEE
Q 001455 1004 K---GTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAG--------SKITSLLTAND--IVLCGTETGLIKG 1070 (1074)
Q Consensus 1004 H---~~~VtsLafSPDG~~LaSGS~DGtIrIWDl~tg~~l~tL~~h--------s~VtsLa~dg~--~LaSGs~DG~IrI 1070 (1074)
| ++..+++..+++...+|||+. +.|+||++.. +.+..++.+ +.+.|++|++. .+++|+.|.+|.|
T Consensus 1300 ~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G-~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~i 1377 (1387)
T KOG1517|consen 1300 HWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSG-EQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSI 1377 (1387)
T ss_pred ccccCccceeeeeccCCCeeeecCc-ceEEEEecCh-hhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEE
Confidence 2 235999999999999999998 9999999654 333333322 34888999976 8889999999999
Q ss_pred Eec
Q 001455 1071 WIP 1073 (1074)
Q Consensus 1071 Wdi 1073 (1074)
|.+
T Consensus 1378 Ys~ 1380 (1387)
T KOG1517|consen 1378 YSC 1380 (1387)
T ss_pred eec
Confidence 964
No 168
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.53 E-value=5.1e-13 Score=144.73 Aligned_cols=235 Identities=13% Similarity=0.148 Sum_probs=170.9
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEEccCCce------------EEEEEeccCCCeEE---------EccCCCeEEEEec
Q 001455 839 VTSFSLFEPGESLLSGSADKTIGVWQMVQRKL------------ELIEVIATKEPIRK---------LDTYGKTIFASTQ 897 (1074)
Q Consensus 839 VtsLafSpdg~~LaSGS~DGtIrIWDl~tg~~------------~~~~~~~h~~~V~s---------~s~dg~~L~sgS~ 897 (1074)
...+.|+|||..|++-+.|..+.+|++...-. ...........|.. ..|+..++++.+.
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr 131 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR 131 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence 45678999999999999999999999753211 01111122223332 1367779999999
Q ss_pred CCeEEEEeCC-Cceeeeec-------CCCeEEEEEe-CCEEEEEECCCcEEEEEc-cCCceeeecccccc-ccCCCCCeE
Q 001455 898 GHRMKVIDSS-RTLKDIYR-------SKGIKSMSVV-QGKIYIGCMDSSIQELAV-SNNVEREIKAPFKS-WRLQSKPIN 966 (1074)
Q Consensus 898 DgtI~VWDl~-~~l~~l~~-------~~~V~sLa~s-dgkLlaGs~DgsI~IwDl-~tg~~~~i~~~~r~-~~~h~~~I~ 966 (1074)
+.-|++||.- +..+.... -....+++|+ ||.-+.++....|++||+ +.|........... -.+....|.
T Consensus 132 ~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giis 211 (406)
T KOG2919|consen 132 DQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIIS 211 (406)
T ss_pred cCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecccceEEEeeccCCCCCCcchhhhhcccccccceee
Confidence 9999999965 33332222 1235689997 888667777899999999 55554333221111 234467899
Q ss_pred EEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEccCCCCCeEEEEEecCCCEEEEEE-CCCcEEEEECC-CCcEEEEEe
Q 001455 967 SLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNS-SASSLQIWLRG-TQQKVGRIS 1044 (1074)
Q Consensus 967 sL~~spd~i~las~S~dDgtI~IWDl~t~~~i~~l~gH~~~VtsLafSPDG~~LaSGS-~DGtIrIWDl~-tg~~l~tL~ 1044 (1074)
+++++|-...+.+.+.-+.++-||.-..+.+...+.+|.+.|+.+.|.+||+.|.+|+ .|-.|-.||++ .+.++..+.
T Consensus 212 c~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~ 291 (406)
T KOG2919|consen 212 CFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALE 291 (406)
T ss_pred eeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhh
Confidence 9999998764544444667888998888888999999999999999999999999998 57889999965 466688888
Q ss_pred CCCC-----eE-EEEEcCCEEEEEECCCcEEEEec
Q 001455 1045 AGSK-----IT-SLLTANDIVLCGTETGLIKGWIP 1073 (1074)
Q Consensus 1045 ~hs~-----Vt-sLa~dg~~LaSGs~DG~IrIWdi 1073 (1074)
.|-. |. .+.+.+++|++|+.||.|++||.
T Consensus 292 rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdl 326 (406)
T KOG2919|consen 292 RHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDL 326 (406)
T ss_pred hhccCccceEEEecCCCCceeeccCCCccEEEEec
Confidence 7722 22 24455889999999999999984
No 169
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.52 E-value=1.9e-12 Score=158.60 Aligned_cols=252 Identities=15% Similarity=0.220 Sum_probs=169.4
Q ss_pred cccceeeEEEEeecCCCCCcEEEEEEe---CCEEEEEECCCcEEEEECCCCC-----eeEEEEeccCCCCEEEEEEcCCC
Q 001455 777 SRISCVHTQILEASHKCSGAVTALIYY---KGLLCSGFSDGSIKMWDIKKQS-----AMLVWDVKEHRKAVTSFSLFEPG 848 (1074)
Q Consensus 777 ~~~~~~~tl~le~~~gH~~~VtsLafS---~~~LaSGs~DGtVrIWDl~t~~-----~~~i~tl~gH~~~VtsLafSpdg 848 (1074)
..|+..-+++-+++ .|...|..++.+ ..+++|||.||+|++||...-. .....++....+.+.++.+.+.+
T Consensus 1032 ~gW~p~G~lVAhL~-Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~ 1110 (1431)
T KOG1240|consen 1032 PGWNPRGILVAHLH-EHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNG 1110 (1431)
T ss_pred CCCCccceEeehhh-hccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCC
Confidence 34666666664444 799999999999 3589999999999999986422 22333444456889999999999
Q ss_pred CEEEEEeCCCeEEEEEccCCce-----EEEEE--eccCCCeEEE---c-cCCC-eEEEEecCCeEEEEeCCCc-----ee
Q 001455 849 ESLLSGSADKTIGVWQMVQRKL-----ELIEV--IATKEPIRKL---D-TYGK-TIFASTQGHRMKVIDSSRT-----LK 911 (1074)
Q Consensus 849 ~~LaSGS~DGtIrIWDl~tg~~-----~~~~~--~~h~~~V~s~---s-~dg~-~L~sgS~DgtI~VWDl~~~-----l~ 911 (1074)
+.+|.++.||.|++.+++.... .+... ....+.+.++ . ..+. .++.++..+.|..||++.. .+
T Consensus 1111 ~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk 1190 (1431)
T KOG1240|consen 1111 DQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLK 1190 (1431)
T ss_pred CeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhh
Confidence 9999999999999999875211 11111 1122334432 1 2233 7888888899999998732 22
Q ss_pred eeecCCCeEEEEEe-CCE-EEEEECCCcEEEEEccCCceeeecccccccc-CCCCCeEEEEEcCCc---eEEEEEec-CC
Q 001455 912 DIYRSKGIKSMSVV-QGK-IYIGCMDSSIQELAVSNNVEREIKAPFKSWR-LQSKPINSLVVYKDW---LYSASSSV-EG 984 (1074)
Q Consensus 912 ~l~~~~~V~sLa~s-dgk-LlaGs~DgsI~IwDl~tg~~~~i~~~~r~~~-~h~~~I~sL~~spd~---i~las~S~-dD 984 (1074)
.-..++.|++++.+ .+. ++.|+..|.+.+||++-+.. +..|. .+..+|..+..+|-. ...++++. ..
T Consensus 1191 ~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~------i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~ 1264 (1431)
T KOG1240|consen 1191 NQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVP------ILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSN 1264 (1431)
T ss_pred cCccccceeEEEecCCceEEEEecCCceEEEEEeecCce------eecccCcccCCcceEEeeccCCCCceEEEecccCC
Confidence 22336779999997 444 66799999999999987443 33443 234677777776532 23333332 56
Q ss_pred CeEEEEECCCCCeEEEccCC-------------------CCCeEEEEEecCCCEEEEEECCCcEEEEECC
Q 001455 985 SNIKEWRRHRKPQISIAPEK-------------------GTTIQAMAVVEDFIYLNYNSSASSLQIWLRG 1035 (1074)
Q Consensus 985 gtI~IWDl~t~~~i~~l~gH-------------------~~~VtsLafSPDG~~LaSGS~DGtIrIWDl~ 1035 (1074)
+.|.+|+..+|.+.+.+... .-......+..-+.++.+|+.|+.|+.||..
T Consensus 1265 nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~ 1334 (1431)
T KOG1240|consen 1265 NEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPT 1334 (1431)
T ss_pred CceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCC
Confidence 78999999888765544322 1112223344456788999999999999854
No 170
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.52 E-value=5.7e-13 Score=160.82 Aligned_cols=242 Identities=18% Similarity=0.198 Sum_probs=169.6
Q ss_pred CCCcEEEEEEe----CCEEEEEECCCcEEEEECCC---CCeeEEEEec---cC----CCCEEEEEEcCCCCEEEEEeCCC
Q 001455 793 CSGAVTALIYY----KGLLCSGFSDGSIKMWDIKK---QSAMLVWDVK---EH----RKAVTSFSLFEPGESLLSGSADK 858 (1074)
Q Consensus 793 H~~~VtsLafS----~~~LaSGs~DGtVrIWDl~t---~~~~~i~tl~---gH----~~~VtsLafSpdg~~LaSGS~DG 858 (1074)
-...|+.+.+- ..++++|+.||.||||+-.. ++.+.+..+. ++ .+.=.-+.|.....+|+++|.-.
T Consensus 1108 ~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r 1187 (1387)
T KOG1517|consen 1108 PDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVR 1187 (1387)
T ss_pred CCCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCee
Confidence 35678888887 23799999999999996432 2233333332 11 11113467877777787777789
Q ss_pred eEEEEEccCCceEEEEEeccCCCeEEEc---cCCCeEEEEecCCeEEEEeCCC-----ceeeeec-CC--CeEEEEEe--
Q 001455 859 TIGVWQMVQRKLELIEVIATKEPIRKLD---TYGKTIFASTQGHRMKVIDSSR-----TLKDIYR-SK--GIKSMSVV-- 925 (1074)
Q Consensus 859 tIrIWDl~tg~~~~~~~~~h~~~V~s~s---~dg~~L~sgS~DgtI~VWDl~~-----~l~~l~~-~~--~V~sLa~s-- 925 (1074)
.|+|||........-...+....+++++ .+|+.+++|..||.|++||.+- .+..... .. +|..+.+.
T Consensus 1188 ~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~ 1267 (1387)
T KOG1517|consen 1188 SIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQ 1267 (1387)
T ss_pred EEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecC
Confidence 9999999887655544456667788775 5688999999999999999872 1222222 22 37777774
Q ss_pred -CCEEEEEECCCcEEEEEccCCceeeeccccccccCCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeE--EE--
Q 001455 926 -QGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQI--SI-- 1000 (1074)
Q Consensus 926 -dgkLlaGs~DgsI~IwDl~tg~~~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S~dDgtI~IWDl~t~~~i--~~-- 1000 (1074)
.+++++|+.||.|++||++.............|. .+...+++..|+....+++++ .+.|+||+....... +.
T Consensus 1268 G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~-yGs~lTal~VH~hapiiAsGs--~q~ikIy~~~G~~l~~~k~n~ 1344 (1387)
T KOG1517|consen 1268 GLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWE-YGSALTALTVHEHAPIIASGS--AQLIKIYSLSGEQLNIIKYNP 1344 (1387)
T ss_pred CCcceeeeccCCeEEEEecccCcccccceeeeccc-cCccceeeeeccCCCeeeecC--cceEEEEecChhhhcccccCc
Confidence 4569999999999999999853322222222221 134699999999999999887 389999998654421 11
Q ss_pred --ccCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCC
Q 001455 1001 --APEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQ 1037 (1074)
Q Consensus 1001 --l~gH~~~VtsLafSPDG~~LaSGS~DGtIrIWDl~tg 1037 (1074)
+....+.+.+++|+|..-.+|+|+.|.+|.||...+.
T Consensus 1345 ~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1345 GFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred ccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCc
Confidence 1112346799999999999999999999999986654
No 171
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.52 E-value=7.6e-13 Score=148.84 Aligned_cols=240 Identities=11% Similarity=0.173 Sum_probs=174.9
Q ss_pred EEEeccCCCCEEEEEEcCCCC--EEEEEeCCCeEEEEEccCCc---eEEEEEeccCCCeEEE--cc-CCCeEEEEecCCe
Q 001455 829 VWDVKEHRKAVTSFSLFEPGE--SLLSGSADKTIGVWQMVQRK---LELIEVIATKEPIRKL--DT-YGKTIFASTQGHR 900 (1074)
Q Consensus 829 i~tl~gH~~~VtsLafSpdg~--~LaSGS~DGtIrIWDl~tg~---~~~~~~~~h~~~V~s~--s~-dg~~L~sgS~Dgt 900 (1074)
....+-|.+.|++++|+|... .+++|+.-|+|-+||+.+.+ .......+|..+|.++ +| +...+++.+.||+
T Consensus 179 ~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGt 258 (498)
T KOG4328|consen 179 LNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGT 258 (498)
T ss_pred cceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCce
Confidence 345567899999999999876 48899999999999995322 2334556788888874 44 4458999999999
Q ss_pred EEEEeCCCcee-eeec----CCCeEEEEEe--CCEEEEEECCCcEEEEEccCCceeeeccccccccCCCCCeEEEEEcCC
Q 001455 901 MKVIDSSRTLK-DIYR----SKGIKSMSVV--QGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKD 973 (1074)
Q Consensus 901 I~VWDl~~~l~-~l~~----~~~V~sLa~s--dgkLlaGs~DgsI~IwDl~tg~~~~i~~~~r~~~~h~~~I~sL~~spd 973 (1074)
|+.-|+++... .+.. .....++.|+ ++.+++|..=|...+||.+++.... ..+..|...|++++++|-
T Consensus 259 iR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~-----~~~~lh~kKI~sv~~NP~ 333 (498)
T KOG4328|consen 259 IRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEY-----ENLRLHKKKITSVALNPV 333 (498)
T ss_pred eeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccc-----hhhhhhhcccceeecCCC
Confidence 99999984322 2222 2235566676 5558888877899999999865421 345677889999999998
Q ss_pred ceEEEEEecCCCeEEEEECCCC---C-eEEEccCCCCCeEEEEEecCCCEEEEEECCCcEEEEEC----CCCcEEEEEeC
Q 001455 974 WLYSASSSVEGSNIKEWRRHRK---P-QISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLR----GTQQKVGRISA 1045 (1074)
Q Consensus 974 ~i~las~S~dDgtI~IWDl~t~---~-~i~~l~gH~~~VtsLafSPDG~~LaSGS~DGtIrIWDl----~tg~~l~tL~~ 1045 (1074)
..+.+..+.-|++.+|||++.- . ..-....|...|.+..|||+|..|+|.+.|+.|+|||. ....+..++..
T Consensus 334 ~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~H 413 (498)
T KOG4328|consen 334 CPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPH 413 (498)
T ss_pred CchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceeec
Confidence 7766555558899999997542 2 12233478899999999999888999999999999997 34455566653
Q ss_pred C---CC-eEE--EEEc--CCEEEEEECCCcEEEEec
Q 001455 1046 G---SK-ITS--LLTA--NDIVLCGTETGLIKGWIP 1073 (1074)
Q Consensus 1046 h---s~-Vts--La~d--g~~LaSGs~DG~IrIWdi 1073 (1074)
. ++ ++- ..|+ ..++++|-.-..|-|+|.
T Consensus 414 n~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~ 449 (498)
T KOG4328|consen 414 NNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDG 449 (498)
T ss_pred cCcccccccchhheeCCCccEEEEeccCcceeEEcC
Confidence 3 11 322 3455 448888888777877763
No 172
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.52 E-value=1.8e-12 Score=135.87 Aligned_cols=224 Identities=16% Similarity=0.221 Sum_probs=172.9
Q ss_pred CEEEEEEcCCCCEEEEEeCCCeEEEEEccC---------CceEEEEEeccCCCeEEEccCCCeEEEEecCCeEEEEeCCC
Q 001455 838 AVTSFSLFEPGESLLSGSADKTIGVWQMVQ---------RKLELIEVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSSR 908 (1074)
Q Consensus 838 ~VtsLafSpdg~~LaSGS~DGtIrIWDl~t---------g~~~~~~~~~h~~~V~s~s~dg~~L~sgS~DgtI~VWDl~~ 908 (1074)
.|.+-+|+|.+++|+.|..+|+|-+..+.+ |+.......+|+.++..+..+...+++++. |.|+-|..+.
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~~Lls~gd-G~V~gw~W~E 90 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDDFLLSGGD-GLVYGWEWNE 90 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehhheeeccC-ceEEEeeehh
Confidence 455668999999999999999999998754 333444456899999999888888887776 9999998762
Q ss_pred cee-----eee-----------cCCCeEEEEEe--CCEEEEEECCCcEEEEEccCCceeeeccccccccCCCCCeEEEEE
Q 001455 909 TLK-----DIY-----------RSKGIKSMSVV--QGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVV 970 (1074)
Q Consensus 909 ~l~-----~l~-----------~~~~V~sLa~s--dgkLlaGs~DgsI~IwDl~tg~~~~i~~~~r~~~~h~~~I~sL~~ 970 (1074)
... .+. .-..|..|... .+.++.++.|+.++.||+.+|+.. +.+.+|...++++..
T Consensus 91 ~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~------r~~rGHtDYvH~vv~ 164 (325)
T KOG0649|consen 91 EEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQ------REYRGHTDYVHSVVG 164 (325)
T ss_pred hhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEE------EEEcCCcceeeeeee
Confidence 111 111 11236677663 666777779999999999998865 455899999999999
Q ss_pred cCCceEEEEEecCCCeEEEEECCCCCeEEEccCC----------CCCeEEEEEecCCCEEEEEECCCcEEEEECCCCcEE
Q 001455 971 YKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEK----------GTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKV 1040 (1074)
Q Consensus 971 spd~i~las~S~dDgtI~IWDl~t~~~i~~l~gH----------~~~VtsLafSPDG~~LaSGS~DGtIrIWDl~tg~~l 1040 (1074)
....-.+++++ +||++++||..+++.++.+... +.+|-+++. +..++++|+ ...+.+|+++..++.
T Consensus 165 R~~~~qilsG~-EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGg-Gp~lslwhLrsse~t 240 (325)
T KOG0649|consen 165 RNANGQILSGA-EDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGG-GPKLSLWHLRSSEST 240 (325)
T ss_pred cccCcceeecC-CCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecC-CCceeEEeccCCCce
Confidence 65555566666 8999999999999988766432 224555554 566899887 457999999999999
Q ss_pred EEEeCCCCeEEEEEcCCEEEEEECCCcEEEEe
Q 001455 1041 GRISAGSKITSLLTANDIVLCGTETGLIKGWI 1072 (1074)
Q Consensus 1041 ~tL~~hs~VtsLa~dg~~LaSGs~DG~IrIWd 1072 (1074)
.++....+|..+.|..+.+++||..+.|.-|.
T Consensus 241 ~vfpipa~v~~v~F~~d~vl~~G~g~~v~~~~ 272 (325)
T KOG0649|consen 241 CVFPIPARVHLVDFVDDCVLIGGEGNHVQSYT 272 (325)
T ss_pred EEEecccceeEeeeecceEEEeccccceeeee
Confidence 99998888999999999999999887777775
No 173
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.49 E-value=2.7e-12 Score=137.57 Aligned_cols=266 Identities=15% Similarity=0.137 Sum_probs=189.3
Q ss_pred CcEEEEEEe-----CCEEEEEEC----CCcEEEEECCCCCeeEEEE-eccCCCCEEEEEEcCCCC-----EEEEEeCCCe
Q 001455 795 GAVTALIYY-----KGLLCSGFS----DGSIKMWDIKKQSAMLVWD-VKEHRKAVTSFSLFEPGE-----SLLSGSADKT 859 (1074)
Q Consensus 795 ~~VtsLafS-----~~~LaSGs~----DGtVrIWDl~t~~~~~i~t-l~gH~~~VtsLafSpdg~-----~LaSGS~DGt 859 (1074)
-++.++.|+ +.+||.|+. .+.|.|-.+.....+.+.. -..|.-+++.+.|.|+.. .|+|++ | .
T Consensus 45 ~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~-D-~ 122 (364)
T KOG0290|consen 45 WPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSS-D-F 122 (364)
T ss_pred CceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhccc-C-e
Confidence 367788888 236888884 4667776555332221211 137899999999999874 255544 3 6
Q ss_pred EEEEEccC--CceEEE------EEeccCCCeEEEcc---CCCeEEEEecCCeEEEEeCCC------ceeeeecCCCeEEE
Q 001455 860 IGVWQMVQ--RKLELI------EVIATKEPIRKLDT---YGKTIFASTQGHRMKVIDSSR------TLKDIYRSKGIKSM 922 (1074)
Q Consensus 860 IrIWDl~t--g~~~~~------~~~~h~~~V~s~s~---dg~~L~sgS~DgtI~VWDl~~------~l~~l~~~~~V~sL 922 (1074)
+|+|.+.. ++.... ....+..++++|++ +.+++.+.+-|.+..|||+.. ..+.+.+.+.|..+
T Consensus 123 LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DI 202 (364)
T KOG0290|consen 123 LRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDI 202 (364)
T ss_pred EEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEE
Confidence 99999873 322211 12245667888864 567999999999999999984 23345567889999
Q ss_pred EEe-CCE--EEEEECCCcEEEEEccCCceeeeccccccccCCCCCeEEEEEcC-CceEEEEEecCCCeEEEEECCC-CCe
Q 001455 923 SVV-QGK--IYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYK-DWLYSASSSVEGSNIKEWRRHR-KPQ 997 (1074)
Q Consensus 923 a~s-dgk--LlaGs~DgsI~IwDl~tg~~~~i~~~~r~~~~h~~~I~sL~~sp-d~i~las~S~dDgtI~IWDl~t-~~~ 997 (1074)
+|. ++. +++.+.||++|+||++.-...++.... .....+...+.+++ +..+++++..+...|.|.|++. ...
T Consensus 203 af~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~---p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tp 279 (364)
T KOG0290|consen 203 AFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYED---PSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTP 279 (364)
T ss_pred EeccCccceEEEecCCCcEEEEEecccccceEEecC---CCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcc
Confidence 997 333 666999999999999985543332110 11156777888875 4567777776778999999765 456
Q ss_pred EEEccCCCCCeEEEEEec-CCCEEEEEECCCcEEEEECCCCc------EEEEEeCCCCeEEEEEc---CCEEEEEECC
Q 001455 998 ISIAPEKGTTIQAMAVVE-DFIYLNYNSSASSLQIWLRGTQQ------KVGRISAGSKITSLLTA---NDIVLCGTET 1065 (1074)
Q Consensus 998 i~~l~gH~~~VtsLafSP-DG~~LaSGS~DGtIrIWDl~tg~------~l~tL~~hs~VtsLa~d---g~~LaSGs~D 1065 (1074)
+..+.+|.+.|+.++|.| ....|+|+|.|..+-|||+...- ++-.+...+.|+.+.|. ++.++.+...
T Consensus 280 va~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~~~~Dwiai~~~k 357 (364)
T KOG0290|consen 280 VARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQWSSSQPDWIAICFGK 357 (364)
T ss_pred eehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhhccceeeeeeecccCCCEEEEEecC
Confidence 788999999999999999 45689999999999999976532 34455566779999997 6788877643
No 174
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.47 E-value=9.1e-12 Score=134.59 Aligned_cols=238 Identities=10% Similarity=0.161 Sum_probs=158.9
Q ss_pred CcccceeeEEEEeecCCCCCcEEEEEEe----CCEEEEEECCCcEEEEECCC-------CCeeEEEEeccCCCCEEEEEE
Q 001455 776 ISRISCVHTQILEASHKCSGAVTALIYY----KGLLCSGFSDGSIKMWDIKK-------QSAMLVWDVKEHRKAVTSFSL 844 (1074)
Q Consensus 776 ~~~~~~~~tl~le~~~gH~~~VtsLafS----~~~LaSGs~DGtVrIWDl~t-------~~~~~i~tl~gH~~~VtsLaf 844 (1074)
...|.|..... .|.+.|..|.|. |..+|+++.|+++.||.-.. .+.....++....+.|+.+.|
T Consensus 46 s~~W~~Ts~Wr-----ah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~F 120 (361)
T KOG2445|consen 46 SGTWSCTSSWR-----AHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKF 120 (361)
T ss_pred CCceEEeeeEE-----ecCCcEEEEEecCccccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEe
Confidence 34566666655 789999999998 66799999999999997521 223356677788899999999
Q ss_pred cCC--CCEEEEEeCCCeEEEEEccCCceEEEEEeccCCCeEEEccCCCeEEEEecCCeEEEEeCCCceeee-----ecCC
Q 001455 845 FEP--GESLLSGSADKTIGVWQMVQRKLELIEVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSSRTLKDI-----YRSK 917 (1074)
Q Consensus 845 Spd--g~~LaSGS~DGtIrIWDl~tg~~~~~~~~~h~~~V~s~s~dg~~L~sgS~DgtI~VWDl~~~l~~l-----~~~~ 917 (1074)
.|. |-.|++++.||++|||+....-- +.-|.+...++.+ ....
T Consensus 121 aP~hlGLklA~~~aDG~lRIYEA~dp~n------------------------------Ls~W~Lq~Ei~~~~~pp~~~~~ 170 (361)
T KOG2445|consen 121 APKHLGLKLAAASADGILRIYEAPDPMN------------------------------LSQWTLQHEIQNVIDPPGKNKQ 170 (361)
T ss_pred cchhcceEEEEeccCcEEEEEecCCccc------------------------------cccchhhhhhhhccCCcccccC
Confidence 986 45599999999999998754211 1112221111100 0122
Q ss_pred CeEEEEEe----CCEEEE-EECC-----CcEEEEEccCCceeeeccccccccCCCCCeEEEEEcCCc---eEEEEEecCC
Q 001455 918 GIKSMSVV----QGKIYI-GCMD-----SSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDW---LYSASSSVEG 984 (1074)
Q Consensus 918 ~V~sLa~s----dgkLla-Gs~D-----gsI~IwDl~tg~~~~i~~~~r~~~~h~~~I~sL~~spd~---i~las~S~dD 984 (1074)
...|+.|. ...+++ |+.+ +.++||....+..+-.. ...+.++..+|+.+.|.|+- ..+++....|
T Consensus 171 ~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~k--va~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kD 248 (361)
T KOG2445|consen 171 PCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLK--VAELPDHTDPIRDISWAPNIGRSYHLLAVATKD 248 (361)
T ss_pred cceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeee--ehhcCCCCCcceeeeeccccCCceeeEEEeecC
Confidence 34455553 122333 4433 37777776654422111 13445889999999999872 2333333477
Q ss_pred CeEEEEECCCC--------------------CeEEEccCCCCCeEEEEEecCCCEEEEEECCCcEEEEEC---CCCcEEE
Q 001455 985 SNIKEWRRHRK--------------------PQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLR---GTQQKVG 1041 (1074)
Q Consensus 985 gtI~IWDl~t~--------------------~~i~~l~gH~~~VtsLafSPDG~~LaSGS~DGtIrIWDl---~tg~~l~ 1041 (1074)
| |+||++... +.+..+.+|.+.|+.+.|.-.|..|++.|.||.|++|.. +..++..
T Consensus 249 g-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany~n~~kC~s 327 (361)
T KOG2445|consen 249 G-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANYNNLWKCTS 327 (361)
T ss_pred c-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhhhhhheeee
Confidence 7 999997631 134567789999999999999999999999999999973 3455666
Q ss_pred EEeCCCCeEE
Q 001455 1042 RISAGSKITS 1051 (1074)
Q Consensus 1042 tL~~hs~Vts 1051 (1074)
.+...+.|..
T Consensus 328 v~~~e~~~~~ 337 (361)
T KOG2445|consen 328 VLKAEGSVTK 337 (361)
T ss_pred EEeccCCCCC
Confidence 6665544443
No 175
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.46 E-value=1.9e-11 Score=134.94 Aligned_cols=232 Identities=12% Similarity=0.115 Sum_probs=172.2
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCeEEEEEccCCceEEEEEeccCCCeEEEccCCCeEEEEecCC--eEEEEeCCCc--ee
Q 001455 836 RKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATKEPIRKLDTYGKTIFASTQGH--RMKVIDSSRT--LK 911 (1074)
Q Consensus 836 ~~~VtsLafSpdg~~LaSGS~DGtIrIWDl~tg~~~~~~~~~h~~~V~s~s~dg~~L~sgS~Dg--tI~VWDl~~~--l~ 911 (1074)
...+..+.|+.+...|..|+.||. +++....... +.........|...-.....++.++.+. .+++++..+. +-
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~Gy-k~~~~~~~~k-~~~~~~~~~~IvEmLFSSSLvaiV~~~qpr~Lkv~~~Kk~~~IC 82 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDGY-KIFSCSPFEK-CFSKDTEGVSIVEMLFSSSLVAIVSIKQPRKLKVVHFKKKTTIC 82 (391)
T ss_pred CcceeeeeeccceeEEEccCCCce-eEEecCchHH-hhcccCCCeEEEEeecccceeEEEecCCCceEEEEEcccCceEE
Confidence 345777789999988999999985 8887765321 1111122223444446667777776544 5888888743 33
Q ss_pred eeecCCCeEEEEEeCCEEEEEECCCcEEEEEccCCceeeeccccccccCCCCCeEEEEEcCCceEEEEEe-cCCCeEEEE
Q 001455 912 DIYRSKGIKSMSVVQGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSS-VEGSNIKEW 990 (1074)
Q Consensus 912 ~l~~~~~V~sLa~sdgkLlaGs~DgsI~IwDl~tg~~~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S-~dDgtI~IW 990 (1074)
.+.....|-++.+...++++.-.+. |+|||+++-+.... ...+..+...+..+.+++++.+++--+ .+.|.|.+|
T Consensus 83 e~~fpt~IL~VrmNr~RLvV~Lee~-IyIydI~~MklLhT---I~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~ 158 (391)
T KOG2110|consen 83 EIFFPTSILAVRMNRKRLVVCLEES-IYIYDIKDMKLLHT---IETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLF 158 (391)
T ss_pred EEecCCceEEEEEccceEEEEEccc-EEEEecccceeehh---hhccCCCccceEeeccCCCCceEEecCCCCCceEEEE
Confidence 4445677888888766666554444 99999998554322 234445566788888888777765432 245899999
Q ss_pred ECCCCCeEEEccCCCCCeEEEEEecCCCEEEEEECCCc-EEEEECCCCcEEEEEeCCC---CeEEEEEc--CCEEEEEEC
Q 001455 991 RRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASS-LQIWLRGTQQKVGRISAGS---KITSLLTA--NDIVLCGTE 1064 (1074)
Q Consensus 991 Dl~t~~~i~~l~gH~~~VtsLafSPDG~~LaSGS~DGt-IrIWDl~tg~~l~tL~~hs---~VtsLa~d--g~~LaSGs~ 1064 (1074)
|..+-+.+..+..|.+.+-+++|+++|.+|||+|+.|+ ||||.+.+|+.+..|..+. .|.+++|+ +++|++.|.
T Consensus 159 d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~ 238 (391)
T KOG2110|consen 159 DTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSN 238 (391)
T ss_pred EcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecC
Confidence 99999999999999999999999999999999999887 6999999999999999773 38888886 669999999
Q ss_pred CCcEEEEec
Q 001455 1065 TGLIKGWIP 1073 (1074)
Q Consensus 1065 DG~IrIWdi 1073 (1074)
.++|+||++
T Consensus 239 TeTVHiFKL 247 (391)
T KOG2110|consen 239 TETVHIFKL 247 (391)
T ss_pred CCeEEEEEe
Confidence 999999974
No 176
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.44 E-value=2.9e-11 Score=145.37 Aligned_cols=289 Identities=16% Similarity=0.151 Sum_probs=195.8
Q ss_pred eEEEEeecCCCCCcEEEEEEe--CCEEEEEECCCcEEEEECCC--CCeeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCC
Q 001455 783 HTQILEASHKCSGAVTALIYY--KGLLCSGFSDGSIKMWDIKK--QSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADK 858 (1074)
Q Consensus 783 ~tl~le~~~gH~~~VtsLafS--~~~LaSGs~DGtVrIWDl~t--~~~~~i~tl~gH~~~VtsLafSpdg~~LaSGS~DG 858 (1074)
++...+.+-.|.-.++|.+++ +.++|+|..||.|.+|.--. ........+.-|...|++++|+++|.+|+|||..|
T Consensus 194 ~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~ 273 (792)
T KOG1963|consen 194 HTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREG 273 (792)
T ss_pred eeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccce
Confidence 333334444688889999999 66899999999999996433 22233566778999999999999999999999999
Q ss_pred eEEEEEccCCceEEEEEeccCCCeEE--EccCCCeEEEEecCCeEEEEeCCC--ceeeeec------------CCCeEEE
Q 001455 859 TIGVWQMVQRKLELIEVIATKEPIRK--LDTYGKTIFASTQGHRMKVIDSSR--TLKDIYR------------SKGIKSM 922 (1074)
Q Consensus 859 tIrIWDl~tg~~~~~~~~~h~~~V~s--~s~dg~~L~sgS~DgtI~VWDl~~--~l~~l~~------------~~~V~sL 922 (1074)
.+.+|.+.+++ ....+...++|.. ++++++..+....|+.|.+..... ...++.+ .+-.+.+
T Consensus 274 VLv~Wq~~T~~--kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~ 351 (792)
T KOG1963|consen 274 VLVLWQLETGK--KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGV 351 (792)
T ss_pred EEEEEeecCCC--cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeE
Confidence 99999999987 4566777788875 579999999999999999987641 1111111 1113445
Q ss_pred EEe--CCEEEEEECCCcEEEEEccCCceeeeccccc--ccc---CCCCCeEEEEEcCCceEEEEEec-------CC--Ce
Q 001455 923 SVV--QGKIYIGCMDSSIQELAVSNNVEREIKAPFK--SWR---LQSKPINSLVVYKDWLYSASSSV-------EG--SN 986 (1074)
Q Consensus 923 a~s--dgkLlaGs~DgsI~IwDl~tg~~~~i~~~~r--~~~---~h~~~I~sL~~spd~i~las~S~-------dD--gt 986 (1074)
+++ .+.++-.+..|.|++||+.+........... ... .+...++.+..+-.|.++++... .| ..
T Consensus 352 ~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~ 431 (792)
T KOG1963|consen 352 SIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVS 431 (792)
T ss_pred EEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEE
Confidence 553 4556778889999999998765432110000 001 11234566666666777776542 22 25
Q ss_pred EEEEECCCCCe-----EEEccCCCCCeEEEEEec-CCC-EEEEEECCCcEEEEECCCCcE--------EEEEeC--C-CC
Q 001455 987 IKEWRRHRKPQ-----ISIAPEKGTTIQAMAVVE-DFI-YLNYNSSASSLQIWLRGTQQK--------VGRISA--G-SK 1048 (1074)
Q Consensus 987 I~IWDl~t~~~-----i~~l~gH~~~VtsLafSP-DG~-~LaSGS~DGtIrIWDl~tg~~--------l~tL~~--h-s~ 1048 (1074)
+++|-.+.... .....+|...+...++.+ ... ..+++|.||.++||-..+.+. ....-+ | .+
T Consensus 432 LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~ 511 (792)
T KOG1963|consen 432 LKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTP 511 (792)
T ss_pred EEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCc
Confidence 78898654432 233457887777766654 222 789999999999997632211 111111 2 45
Q ss_pred eEEEEEcCC-EEEEEECCCcEEEEec
Q 001455 1049 ITSLLTAND-IVLCGTETGLIKGWIP 1073 (1074)
Q Consensus 1049 VtsLa~dg~-~LaSGs~DG~IrIWdi 1073 (1074)
+++.+|+++ .+++.+.|++|.+||.
T Consensus 512 i~a~~fs~dGslla~s~~~~Itiwd~ 537 (792)
T KOG1963|consen 512 ITALCFSQDGSLLAVSFDDTITIWDY 537 (792)
T ss_pred ccchhhcCCCcEEEEecCCEEEEecC
Confidence 888888743 6777778999999996
No 177
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.44 E-value=3.6e-12 Score=141.21 Aligned_cols=201 Identities=16% Similarity=0.221 Sum_probs=144.2
Q ss_pred cCCCCCcEEEEEEe---CCEEEEEECCCcEEEEECCCCCe-----eEEEEeccCCCCEEEEEEcCCCCE-EEEEeCCCeE
Q 001455 790 SHKCSGAVTALIYY---KGLLCSGFSDGSIKMWDIKKQSA-----MLVWDVKEHRKAVTSFSLFEPGES-LLSGSADKTI 860 (1074)
Q Consensus 790 ~~gH~~~VtsLafS---~~~LaSGs~DGtVrIWDl~t~~~-----~~i~tl~gH~~~VtsLafSpdg~~-LaSGS~DGtI 860 (1074)
-+||+++|..++|+ +..|||||.|.+|.||.+-.+.. .++..+.||...|--++|+|.-.. |+|+|.|.+|
T Consensus 77 v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v 156 (472)
T KOG0303|consen 77 VCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTV 156 (472)
T ss_pred ccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceE
Confidence 35999999999999 66899999999999999864322 357788999999999999998766 8899999999
Q ss_pred EEEEccCCceEEEEEeccCCCeEE--EccCCCeEEEEecCCeEEEEeCCCceeeee--cC---CCeEEEEEeCCEEEEEE
Q 001455 861 GVWQMVQRKLELIEVIATKEPIRK--LDTYGKTIFASTQGHRMKVIDSSRTLKDIY--RS---KGIKSMSVVQGKIYIGC 933 (1074)
Q Consensus 861 rIWDl~tg~~~~~~~~~h~~~V~s--~s~dg~~L~sgS~DgtI~VWDl~~~l~~l~--~~---~~V~sLa~sdgkLlaGs 933 (1074)
.+||+.+|..... ..|.+.|++ |+.+|.++++.+.|..|+|||.+....... .+ +..+.+-..+|.+++.+
T Consensus 157 ~iWnv~tgeali~--l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTG 234 (472)
T KOG0303|consen 157 SIWNVGTGEALIT--LDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTG 234 (472)
T ss_pred EEEeccCCceeee--cCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeec
Confidence 9999999975433 448888886 678999999999999999999984332222 22 23444444588877643
Q ss_pred ----CCCcEEEEEccCCceeeeccccccccCCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCC
Q 001455 934 ----MDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKP 996 (1074)
Q Consensus 934 ----~DgsI~IwDl~tg~~~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S~dDgtI~IWDl~t~~ 996 (1074)
.+..+-+||..+-+.-... ..+. .+..|.-=-+.+|...+.-.+-.|+.|+.|.+....
T Consensus 235 fsr~seRq~aLwdp~nl~eP~~~---~elD-tSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 235 FSRMSERQIALWDPNNLEEPIAL---QELD-TSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred cccccccceeccCcccccCccee---EEec-cCCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence 5788999998763321111 1111 133333333445544333334468999999987655
No 178
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.43 E-value=8.7e-12 Score=135.30 Aligned_cols=259 Identities=13% Similarity=0.166 Sum_probs=185.5
Q ss_pred EEEEEEe--CCEEEEEECCCcEEEEECCCC----C---e-----eEEEEeccCCCCEEEEEEc-------CCCCEEEEEe
Q 001455 797 VTALIYY--KGLLCSGFSDGSIKMWDIKKQ----S---A-----MLVWDVKEHRKAVTSFSLF-------EPGESLLSGS 855 (1074)
Q Consensus 797 VtsLafS--~~~LaSGs~DGtVrIWDl~t~----~---~-----~~i~tl~gH~~~VtsLafS-------pdg~~LaSGS 855 (1074)
...+.|+ +..|++-+.|..+++|++-.. + . .....+ .....|...+|- |+..++++.+
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~-~eg~tvydy~wYs~M~s~qP~t~l~a~ss 130 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRY-QEGETVYDYCWYSRMKSDQPSTNLFAVSS 130 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEe-ccCCEEEEEEeeeccccCCCccceeeecc
Confidence 3457788 447999999999999987421 0 0 011111 123567777775 6778899999
Q ss_pred CCCeEEEEEccCCceEEEEE-eccCCCe-----EEEccCCCeEEEEecCCeEEEEeCCCc------eeeeec-----CCC
Q 001455 856 ADKTIGVWQMVQRKLELIEV-IATKEPI-----RKLDTYGKTIFASTQGHRMKVIDSSRT------LKDIYR-----SKG 918 (1074)
Q Consensus 856 ~DGtIrIWDl~tg~~~~~~~-~~h~~~V-----~s~s~dg~~L~sgS~DgtI~VWDl~~~------l~~l~~-----~~~ 918 (1074)
.|.-|++||.-+|+..+... ..|.+.+ .+|+++|.+|++|. .+.|+++|+.+. ..++.. .+-
T Consensus 131 r~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~~k~gq~gi 209 (406)
T KOG2919|consen 131 RDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGI 209 (406)
T ss_pred ccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhhhhcccccccce
Confidence 99999999999998755432 2333333 35899999998765 478999999521 112222 223
Q ss_pred eEEEEEe--CCE-EEEEECCCcEEEEEccCCceeeeccccccccCCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCC-
Q 001455 919 IKSMSVV--QGK-IYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHR- 994 (1074)
Q Consensus 919 V~sLa~s--dgk-LlaGs~DgsI~IwDl~tg~~~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S~dDgtI~IWDl~t- 994 (1074)
+.+++++ +.+ +..|+....+-+|.-...... ..+.+|+..|+.+.++++|..+++++..+..|..||++.
T Consensus 210 isc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl------~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~ 283 (406)
T KOG2919|consen 210 ISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPL------QLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYS 283 (406)
T ss_pred eeeeeccCCCCcceeeecccceeeeEecCCCCce------eeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhc
Confidence 7788885 554 566888888888887774443 344688999999999999999999988888999999764
Q ss_pred CCeEEEccCCCC-CeEEEEE--ecCCCEEEEEECCCcEEEEECCC-CcEEEEEeCCCC-eEEEEEcCC--EEEEEE
Q 001455 995 KPQISIAPEKGT-TIQAMAV--VEDFIYLNYNSSASSLQIWLRGT-QQKVGRISAGSK-ITSLLTAND--IVLCGT 1063 (1074)
Q Consensus 995 ~~~i~~l~gH~~-~VtsLaf--SPDG~~LaSGS~DGtIrIWDl~t-g~~l~tL~~hs~-VtsLa~dg~--~LaSGs 1063 (1074)
+..+..+..|.. .-..|.| .|+|++|++|+.||.|++||+++ |..+..+..+.. |+.+++++- ++++++
T Consensus 284 ~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatss 359 (406)
T KOG2919|consen 284 RDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSS 359 (406)
T ss_pred cchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeecc
Confidence 455556666655 3345555 58999999999999999999988 776777776643 888888765 444443
No 179
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.42 E-value=1.8e-11 Score=133.30 Aligned_cols=283 Identities=10% Similarity=0.125 Sum_probs=188.9
Q ss_pred EeecCCCCCcEEEEEEe-----C--CEEEEEECCCcEEEEECCCCCe-eEEEEe--ccCCCCEEEEEEcCC----CCEEE
Q 001455 787 LEASHKCSGAVTALIYY-----K--GLLCSGFSDGSIKMWDIKKQSA-MLVWDV--KEHRKAVTSFSLFEP----GESLL 852 (1074)
Q Consensus 787 le~~~gH~~~VtsLafS-----~--~~LaSGs~DGtVrIWDl~t~~~-~~i~tl--~gH~~~VtsLafSpd----g~~La 852 (1074)
..+..+|+.+|..++|+ + +.+|+.|. ..+.+|.....-. ..++.+ ..|......++|+-+ ..+++
T Consensus 31 ~~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la 109 (385)
T KOG1034|consen 31 NHLKEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLA 109 (385)
T ss_pred eehhccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEE
Confidence 34445889999999998 2 24555554 5677887664321 122222 247778888999754 44689
Q ss_pred EEeCCCeEEEEEccCCceEEEEEeccCCCeEEEc--c-CCCeEEEEecCCeEEEEeCCC--ceeeeec----CCCeEEEE
Q 001455 853 SGSADKTIGVWQMVQRKLELIEVIATKEPIRKLD--T-YGKTIFASTQGHRMKVIDSSR--TLKDIYR----SKGIKSMS 923 (1074)
Q Consensus 853 SGS~DGtIrIWDl~tg~~~~~~~~~h~~~V~s~s--~-dg~~L~sgS~DgtI~VWDl~~--~l~~l~~----~~~V~sLa 923 (1074)
.||.-|.|+|.|+.++++. ....+|...|..+. | ..+++++++.|..|++|+++. ++..+-+ ...|.++.
T Consensus 110 ~~G~~GvIrVid~~~~~~~-~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD 188 (385)
T KOG1034|consen 110 AGGYLGVIRVIDVVSGQCS-KNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVD 188 (385)
T ss_pred eecceeEEEEEecchhhhc-cceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEE
Confidence 9999999999999988753 35678888888754 3 346899999999999999984 3333332 34599999
Q ss_pred Ee-CC-EEEEEECCCcEEEEEccCCceeeecc----------------------ccccccCCCCCeEEEEEcCCceEEEE
Q 001455 924 VV-QG-KIYIGCMDSSIQELAVSNNVEREIKA----------------------PFKSWRLQSKPINSLVVYKDWLYSAS 979 (1074)
Q Consensus 924 ~s-dg-kLlaGs~DgsI~IwDl~tg~~~~i~~----------------------~~r~~~~h~~~I~sL~~spd~i~las 979 (1074)
|+ +| ++++++.|.++.+|++...+...... ....-..|..+|.++.|.. .++++
T Consensus 189 ~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~g--d~ilS 266 (385)
T KOG1034|consen 189 FSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFG--DFILS 266 (385)
T ss_pred EcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHHh--hheee
Confidence 97 44 58889999999999998432211000 0001122344444444444 34555
Q ss_pred EecCCCeEEEEEC-CCCC-------------eEEEccCCCCCeEEEE--EecCCCEEEEEECCCcEEEEECCCCcE--EE
Q 001455 980 SSVEGSNIKEWRR-HRKP-------------QISIAPEKGTTIQAMA--VVEDFIYLNYNSSASSLQIWLRGTQQK--VG 1041 (1074)
Q Consensus 980 ~S~dDgtI~IWDl-~t~~-------------~i~~l~gH~~~VtsLa--fSPDG~~LaSGS~DGtIrIWDl~tg~~--l~ 1041 (1074)
-+ -++.|..|.. .-++ ....+.-....|+-+. |.|-+++||.|...|.|++||++...+ ..
T Consensus 267 ks-cenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~t 345 (385)
T KOG1034|consen 267 KS-CENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCT 345 (385)
T ss_pred cc-cCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCc
Confidence 55 3468999987 2111 1223333334555554 568889999999999999999988766 23
Q ss_pred EEeCC---CCeEEEEE--cCCEEEEEECCCcEEEEecC
Q 001455 1042 RISAG---SKITSLLT--ANDIVLCGTETGLIKGWIPL 1074 (1074)
Q Consensus 1042 tL~~h---s~VtsLa~--dg~~LaSGs~DG~IrIWdil 1074 (1074)
++..+ ..|...+| ++.+|+...+||+|.-||-+
T Consensus 346 tl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 346 TLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred eEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 33332 23777666 48899999999999999853
No 180
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.41 E-value=3.1e-12 Score=139.84 Aligned_cols=242 Identities=10% Similarity=0.105 Sum_probs=167.5
Q ss_pred CCCCcEEEEEEe----CCEEEEEECCCcEEEEECCCCCeeEEEEeccCC-CCEEEEEEcCCCCEEEEEe----CCCeEEE
Q 001455 792 KCSGAVTALIYY----KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHR-KAVTSFSLFEPGESLLSGS----ADKTIGV 862 (1074)
Q Consensus 792 gH~~~VtsLafS----~~~LaSGs~DGtVrIWDl~t~~~~~i~tl~gH~-~~VtsLafSpdg~~LaSGS----~DGtIrI 862 (1074)
+|.+.++.+.|. +..+.+|+.||+|++||++.........+.+|. .+..|++.+..+..+++|+ .|-.|.+
T Consensus 68 ~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~l 147 (376)
T KOG1188|consen 68 GPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVL 147 (376)
T ss_pred CCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEE
Confidence 677777788887 457999999999999999987655566667776 5777888776777788775 4778999
Q ss_pred EEccCCce-EEEEEeccCCCeEEEc---cCCCeEEEEecCCeEEEEeCCCc------eeeeecCCCeEEEEEe-CC--EE
Q 001455 863 WQMVQRKL-ELIEVIATKEPIRKLD---TYGKTIFASTQGHRMKVIDSSRT------LKDIYRSKGIKSMSVV-QG--KI 929 (1074)
Q Consensus 863 WDl~tg~~-~~~~~~~h~~~V~s~s---~dg~~L~sgS~DgtI~VWDl~~~------l~~l~~~~~V~sLa~s-dg--kL 929 (1074)
||++..+. .......|.+.|+++. .+.+.+++|+.||.|.+||+... ..++.....|.++.|. ++ ++
T Consensus 148 wDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI 227 (376)
T KOG1188|consen 148 WDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRI 227 (376)
T ss_pred EEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceE
Confidence 99998765 4555668999998754 34569999999999999999832 3344456679999996 66 79
Q ss_pred EEEECCCcEEEEEccCCceeeecccccccc----CCCCCeEEEEEc-C--CceEEEEEecCCCeEEEEEC---CC---CC
Q 001455 930 YIGCMDSSIQELAVSNNVEREIKAPFKSWR----LQSKPINSLVVY-K--DWLYSASSSVEGSNIKEWRR---HR---KP 996 (1074)
Q Consensus 930 laGs~DgsI~IwDl~tg~~~~i~~~~r~~~----~h~~~I~sL~~s-p--d~i~las~S~dDgtI~IWDl---~t---~~ 996 (1074)
++-+..+...+|++..+....-........ .....-+-+..+ | ...+.+.++ +-++..++-. .+ ..
T Consensus 228 ~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~-~~n~~~~~~~~~~~s~~~~~ 306 (376)
T KOG1188|consen 228 MCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGT-DSNKGTIFPLVDTSSGSLLT 306 (376)
T ss_pred EEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcceEEEecc-ccCceeEEEeeecccccccC
Confidence 999999999999998876432211100000 001111112222 2 233333333 2233444432 22 23
Q ss_pred eEEEccC-CCCCeEEEEEecCCCEEEEEECCCcEEEEEC
Q 001455 997 QISIAPE-KGTTIQAMAVVEDFIYLNYNSSASSLQIWLR 1034 (1074)
Q Consensus 997 ~i~~l~g-H~~~VtsLafSPDG~~LaSGS~DGtIrIWDl 1034 (1074)
....+.+ |..-|+++.|...+.++.|||+||.+.+|..
T Consensus 307 ~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 307 EPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred ccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEec
Confidence 3445555 6678899999999999999999999999985
No 181
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.41 E-value=3.7e-11 Score=133.97 Aligned_cols=276 Identities=13% Similarity=0.160 Sum_probs=182.0
Q ss_pred CCcEEEEEEe---CCEEEEEECCCcEEEEECCCCC-------eeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEE
Q 001455 794 SGAVTALIYY---KGLLCSGFSDGSIKMWDIKKQS-------AMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVW 863 (1074)
Q Consensus 794 ~~~VtsLafS---~~~LaSGs~DGtVrIWDl~t~~-------~~~i~tl~gH~~~VtsLafSpdg~~LaSGS~DGtIrIW 863 (1074)
..+|.++.|. .+.+||||.|..|+||-+.... ......+..|..+|+++.|+|+|..|+||+.+|.|.+|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW 92 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW 92 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence 5689999998 3389999999999999876432 23456678999999999999999999999999999999
Q ss_pred Ecc--------C-----C--ceEEEEEeccCCCeE--EEccCCCeEEEEecCCeEEEEeCC-Cceeeee-c-CCCeEEEE
Q 001455 864 QMV--------Q-----R--KLELIEVIATKEPIR--KLDTYGKTIFASTQGHRMKVIDSS-RTLKDIY-R-SKGIKSMS 923 (1074)
Q Consensus 864 Dl~--------t-----g--~~~~~~~~~h~~~V~--s~s~dg~~L~sgS~DgtI~VWDl~-~~l~~l~-~-~~~V~sLa 923 (1074)
... + . -.......+|...+. ++++++.++++++.|+.+++||+. +...... . .+.+..++
T Consensus 93 k~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgva 172 (434)
T KOG1009|consen 93 KQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVA 172 (434)
T ss_pred EecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccceee
Confidence 765 2 1 012334446777776 478999999999999999999998 3333333 2 44588888
Q ss_pred Ee-CCE-EEEEECCCcEEEEEccCCceeeec----cccccccC---------C----CCCeEEEEEcCCceEEEEEec--
Q 001455 924 VV-QGK-IYIGCMDSSIQELAVSNNVEREIK----APFKSWRL---------Q----SKPINSLVVYKDWLYSASSSV-- 982 (1074)
Q Consensus 924 ~s-dgk-LlaGs~DgsI~IwDl~tg~~~~i~----~~~r~~~~---------h----~~~I~sL~~spd~i~las~S~-- 982 (1074)
|. -++ +.+-+.|...+.+++...+..... .+...... | ......+.|+|+|..+++.+.
T Consensus 173 wDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~ 252 (434)
T KOG1009|consen 173 WDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLF 252 (434)
T ss_pred cchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEccccee
Confidence 85 444 445556665555555432221100 00000000 1 223345667788877765431
Q ss_pred --CC----CeEEEEECC-CCCeEEEccCCCCCeEEEEEec------------------CCCEEEEEECCCcEEEEECCCC
Q 001455 983 --EG----SNIKEWRRH-RKPQISIAPEKGTTIQAMAVVE------------------DFIYLNYNSSASSLQIWLRGTQ 1037 (1074)
Q Consensus 983 --dD----gtI~IWDl~-t~~~i~~l~gH~~~VtsLafSP------------------DG~~LaSGS~DGtIrIWDl~tg 1037 (1074)
.+ ++.++|+.. ..++...+.+...++..+.|+| -+-.+|.++ .+.|+|||.++.
T Consensus 253 ~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt-~~svyvydtq~~ 331 (434)
T KOG1009|consen 253 KVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIAT-KNSVYVYDTQTL 331 (434)
T ss_pred eeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEee-cceEEEeccccc
Confidence 11 233455532 2233444555555566666554 222344555 567999999999
Q ss_pred cEEEEEeC-C-CCeEEEEEc--CCEEEEEECCCcEEE
Q 001455 1038 QKVGRISA-G-SKITSLLTA--NDIVLCGTETGLIKG 1070 (1074)
Q Consensus 1038 ~~l~tL~~-h-s~VtsLa~d--g~~LaSGs~DG~IrI 1070 (1074)
.++..... | ..|+.++|+ |.+++..+.||...+
T Consensus 332 ~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~ 368 (434)
T KOG1009|consen 332 EPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSL 368 (434)
T ss_pred cceEEEeeeeeeeecceeecCCCcEEEEeccCCceEE
Confidence 99877764 4 569999997 559999999997543
No 182
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.39 E-value=3.2e-12 Score=147.08 Aligned_cols=240 Identities=10% Similarity=0.142 Sum_probs=169.0
Q ss_pred EEEeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEccCC------ce-EEEEEeccCCCeEE--EccCCCeEEEEecCC
Q 001455 829 VWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQR------KL-ELIEVIATKEPIRK--LDTYGKTIFASTQGH 899 (1074)
Q Consensus 829 i~tl~gH~~~VtsLafSpdg~~LaSGS~DGtIrIWDl~tg------~~-~~~~~~~h~~~V~s--~s~dg~~L~sgS~Dg 899 (1074)
..++..|.+.|+.+.|+|....|++++.||++++|++... .. ....+.+|..+|.| +..++..+++|+.||
T Consensus 287 k~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg 366 (577)
T KOG0642|consen 287 KFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDG 366 (577)
T ss_pred eeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCc
Confidence 3467789999999999999999999999999999999321 11 23356689999987 468899999999999
Q ss_pred eEEEEeCCC------------ceeeeec-CCCeEEEEEe--CCEEEEEECCCcEEEEEccCCceeeeccccccccCCCCC
Q 001455 900 RMKVIDSSR------------TLKDIYR-SKGIKSMSVV--QGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKP 964 (1074)
Q Consensus 900 tI~VWDl~~------------~l~~l~~-~~~V~sLa~s--dgkLlaGs~DgsI~IwDl~tg~~~~i~~~~r~~~~h~~~ 964 (1074)
+|+.|++.. ....+.+ ...|+.++++ ..++++++.||+++.|+........+..+ .. ...
T Consensus 367 ~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~----~e-~g~ 441 (577)
T KOG0642|consen 367 TIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEP----KE-HGY 441 (577)
T ss_pred eeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCccccCCc----cc-cCC
Confidence 999997641 1112222 3458889987 55699999999999999987554222111 11 223
Q ss_pred eEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEccCC-------CCCeEEEEEecCCCEEEEEECCCcEEEEECCCC
Q 001455 965 INSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEK-------GTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQ 1037 (1074)
Q Consensus 965 I~sL~~spd~i~las~S~dDgtI~IWDl~t~~~i~~l~gH-------~~~VtsLafSPDG~~LaSGS~DGtIrIWDl~tg 1037 (1074)
..++.+-.........+..-+.-.+++......+..+... ...+..+.+.|.+.+.+++..|+.|+++|..++
T Consensus 442 Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~ 521 (577)
T KOG0642|consen 442 PLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTG 521 (577)
T ss_pred cceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceeccccccc
Confidence 3444443332111111101122223333333333333211 135777888999999999999999999999999
Q ss_pred cEEEEEeCC-CCeEEEEEc--CCEEEEEECCCcEEEEec
Q 001455 1038 QKVGRISAG-SKITSLLTA--NDIVLCGTETGLIKGWIP 1073 (1074)
Q Consensus 1038 ~~l~tL~~h-s~VtsLa~d--g~~LaSGs~DG~IrIWdi 1073 (1074)
..++....| ..|++++++ |-+|++|+.||.|++|+.
T Consensus 522 ~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kl 560 (577)
T KOG0642|consen 522 KILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKL 560 (577)
T ss_pred ccchheeeccceecceeecCCCceEEeecCCceeehhhc
Confidence 999999988 558888876 669999999999999975
No 183
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.39 E-value=5.1e-11 Score=129.00 Aligned_cols=241 Identities=16% Similarity=0.192 Sum_probs=171.8
Q ss_pred CCCCCcEEEEEEe--CCEEEEEECCCcEEEEECCCCCeeEEEEeccCCCCEEEEEEcCCCCE-EEEEeCCCeEEEEEccC
Q 001455 791 HKCSGAVTALIYY--KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGES-LLSGSADKTIGVWQMVQ 867 (1074)
Q Consensus 791 ~gH~~~VtsLafS--~~~LaSGs~DGtVrIWDl~t~~~~~i~tl~gH~~~VtsLafSpdg~~-LaSGS~DGtIrIWDl~t 867 (1074)
.+|..+|++++|| |..|+|+|.|..|++||+..+.+ .+.+ ...++|+.+.|+|-... .+.+-.+..-.+-++..
T Consensus 62 saH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~--l~ri-rf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~ 138 (405)
T KOG1273|consen 62 SAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSP--LKRI-RFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSD 138 (405)
T ss_pred hccccceeEEEecCCCCEeeeecCCceeEEEeccCCCc--eeEE-EccCccceeeeccccCCeEEEEEecCCcEEEEecC
Confidence 4899999999999 55899999999999999999875 4554 34789999999997665 33333344445555544
Q ss_pred CceEEEEE--eccCCCeE---EEccCCCeEEEEecCCeEEEEeCCC--ceeeeec--CCCeEEEEEe-CCE-EEEEECCC
Q 001455 868 RKLELIEV--IATKEPIR---KLDTYGKTIFASTQGHRMKVIDSSR--TLKDIYR--SKGIKSMSVV-QGK-IYIGCMDS 936 (1074)
Q Consensus 868 g~~~~~~~--~~h~~~V~---s~s~dg~~L~sgS~DgtI~VWDl~~--~l~~l~~--~~~V~sLa~s-dgk-LlaGs~Dg 936 (1074)
+.-..... .+..+.+. .+..+|+++++|...|.+.+||... +...+.- ...|+.+.++ .|+ ++.-+.|.
T Consensus 139 ~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDR 218 (405)
T KOG1273|consen 139 PKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDR 218 (405)
T ss_pred CceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCc
Confidence 32111111 11111122 2788999999999999999999873 3333222 3568888898 666 66799999
Q ss_pred cEEEEEccC----Cceeeecccccccc--CCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEccCCC-CCeE
Q 001455 937 SIQELAVSN----NVEREIKAPFKSWR--LQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKG-TTIQ 1009 (1074)
Q Consensus 937 sI~IwDl~t----g~~~~i~~~~r~~~--~h~~~I~sL~~spd~i~las~S~dDgtI~IWDl~t~~~i~~l~gH~-~~Vt 1009 (1074)
.|+.|++.. |+.... .+.+.+. .....-.++.|+.+|.|+++++..-..++||....|.+++.+.|.. ....
T Consensus 219 vIR~ye~~di~~~~r~~e~-e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~ 297 (405)
T KOG1273|consen 219 VIRTYEISDIDDEGRDGEV-EPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELL 297 (405)
T ss_pred eEEEEehhhhcccCccCCc-ChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhhee
Confidence 999999873 111111 0001111 1134456788999999999888777899999999999999998877 4677
Q ss_pred EEEEecCCCEEEEEECCCcEEEEECCC
Q 001455 1010 AMAVVEDFIYLNYNSSASSLQIWLRGT 1036 (1074)
Q Consensus 1010 sLafSPDG~~LaSGS~DGtIrIWDl~t 1036 (1074)
.+.|+|-...+++- ..|.|+||....
T Consensus 298 DV~whp~rp~i~si-~sg~v~iw~~~~ 323 (405)
T KOG1273|consen 298 DVNWHPVRPIIASI-ASGVVYIWAVVQ 323 (405)
T ss_pred ecccccceeeeeec-cCCceEEEEeec
Confidence 89999999888888 579999997543
No 184
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.39 E-value=2.8e-10 Score=129.82 Aligned_cols=259 Identities=14% Similarity=0.123 Sum_probs=159.6
Q ss_pred CCcEEEEEEe--CCEEEEE-ECCCcEEEEECC-CCCeeEEEEeccCCCCEEEEEEcCCCCEEEEEe-CCCeEEEEEccC-
Q 001455 794 SGAVTALIYY--KGLLCSG-FSDGSIKMWDIK-KQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGS-ADKTIGVWQMVQ- 867 (1074)
Q Consensus 794 ~~~VtsLafS--~~~LaSG-s~DGtVrIWDl~-t~~~~~i~tl~gH~~~VtsLafSpdg~~LaSGS-~DGtIrIWDl~t- 867 (1074)
.+....++++ +.+|+++ ..++.|.+|+++ ++......... ..+....++|+|+++++++++ .++.|.+|++.+
T Consensus 34 ~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~ 112 (330)
T PRK11028 34 PGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKD 112 (330)
T ss_pred CCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCC
Confidence 3556678888 4466554 568999999997 33333233322 334567899999999988776 488999999974
Q ss_pred CceE-EEEEe-ccCCCe-EEEccCCCeEEEEe-cCCeEEEEeCCCc--ee-------eeecCCCeEEEEEe-CCE-EEEE
Q 001455 868 RKLE-LIEVI-ATKEPI-RKLDTYGKTIFAST-QGHRMKVIDSSRT--LK-------DIYRSKGIKSMSVV-QGK-IYIG 932 (1074)
Q Consensus 868 g~~~-~~~~~-~h~~~V-~s~s~dg~~L~sgS-~DgtI~VWDl~~~--l~-------~l~~~~~V~sLa~s-dgk-LlaG 932 (1074)
+... ..... ....+- ..++++++++++++ .++.|.+||+... .. ....+.....+.|+ +|+ ++++
T Consensus 113 g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~ 192 (330)
T PRK11028 113 GIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCV 192 (330)
T ss_pred CCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEE
Confidence 3211 11111 111222 24789999886665 5689999998731 11 11224456788886 666 5555
Q ss_pred EC-CCcEEEEEccC--CceeeeccccccccC---CCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEccCC--
Q 001455 933 CM-DSSIQELAVSN--NVEREIKAPFKSWRL---QSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEK-- 1004 (1074)
Q Consensus 933 s~-DgsI~IwDl~t--g~~~~i~~~~r~~~~---h~~~I~sL~~spd~i~las~S~dDgtI~IWDl~t~~~i~~l~gH-- 1004 (1074)
.. ++.|.+|++.. +....+.. ...... +......+.++|++.++.+....++.|.+|++........+.++
T Consensus 193 ~~~~~~v~v~~~~~~~~~~~~~~~-~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~ 271 (330)
T PRK11028 193 NELNSSVDVWQLKDPHGEIECVQT-LDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQP 271 (330)
T ss_pred ecCCCEEEEEEEeCCCCCEEEEEE-EecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEe
Confidence 54 89999999974 33211111 011111 11233468899999988887656789999998543211111122
Q ss_pred -CCCeEEEEEecCCCEEEEEEC-CCcEEEEECC--CCcE--EEEEeCCCCeEEEEE
Q 001455 1005 -GTTIQAMAVVEDFIYLNYNSS-ASSLQIWLRG--TQQK--VGRISAGSKITSLLT 1054 (1074)
Q Consensus 1005 -~~~VtsLafSPDG~~LaSGS~-DGtIrIWDl~--tg~~--l~tL~~hs~VtsLa~ 1054 (1074)
....+.+.++|||++|++++. +++|.+|+++ ++.. +.++.......++++
T Consensus 272 ~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~~~g~l~~~~~~~~g~~P~~~~~ 327 (330)
T PRK11028 272 TETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDGETGLLTELGRYAVGQGPMWVSV 327 (330)
T ss_pred ccccCCceEECCCCCEEEEEEccCCcEEEEEEcCCCCcEEEccccccCCCceEEEE
Confidence 234568899999999998775 8999999864 4433 444444333444443
No 185
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.38 E-value=9.8e-11 Score=123.09 Aligned_cols=265 Identities=16% Similarity=0.208 Sum_probs=177.6
Q ss_pred EEEEEEe--CCEEEEEECCCcEEEEECCCC---C-----eeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcc
Q 001455 797 VTALIYY--KGLLCSGFSDGSIKMWDIKKQ---S-----AMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMV 866 (1074)
Q Consensus 797 VtsLafS--~~~LaSGs~DGtVrIWDl~t~---~-----~~~i~tl~gH~~~VtsLafSpdg~~LaSGS~DGtIrIWDl~ 866 (1074)
|.+-+++ +.++++|..+|+|.+..+++. . ...+...++|.++|..++|. ..+|++|+ ||.|+-|..+
T Consensus 13 vf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W~ 89 (325)
T KOG0649|consen 13 VFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEWN 89 (325)
T ss_pred HHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEeeeh
Confidence 3334455 568999999999999988531 1 12456678999999999997 55688887 5999999875
Q ss_pred CCce-------EEEEEeccCC-----CeEE--EccCCCeEEEEecCCeEEEEeCC-Ccee-eeec-CCCeEEEEE-e-CC
Q 001455 867 QRKL-------ELIEVIATKE-----PIRK--LDTYGKTIFASTQGHRMKVIDSS-RTLK-DIYR-SKGIKSMSV-V-QG 927 (1074)
Q Consensus 867 tg~~-------~~~~~~~h~~-----~V~s--~s~dg~~L~sgS~DgtI~VWDl~-~~l~-~l~~-~~~V~sLa~-s-dg 927 (1074)
.... .....+.+.+ .|.+ +.|..+.+++++.|+.++.||++ +.++ .+.+ .+.|.++.- + ++
T Consensus 90 E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~ 169 (325)
T KOG0649|consen 90 EEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANG 169 (325)
T ss_pred hhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCc
Confidence 4211 0111111221 1333 56777788888899999999998 3443 3443 345888887 3 88
Q ss_pred EEEEEECCCcEEEEEccCCceeeeccccc---cccC-CCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEccC
Q 001455 928 KIYIGCMDSSIQELAVSNNVEREIKAPFK---SWRL-QSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPE 1003 (1074)
Q Consensus 928 kLlaGs~DgsI~IwDl~tg~~~~i~~~~r---~~~~-h~~~I~sL~~spd~i~las~S~dDgtI~IWDl~t~~~i~~l~g 1003 (1074)
++++|+.||++++||.++++......+.+ .... -+..|.+++.+.++. ++++ +..+.+|++...++..++.
T Consensus 170 qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWl--vCGg--Gp~lslwhLrsse~t~vfp- 244 (325)
T KOG0649|consen 170 QILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWL--VCGG--GPKLSLWHLRSSESTCVFP- 244 (325)
T ss_pred ceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceE--EecC--CCceeEEeccCCCceEEEe-
Confidence 99999999999999999988654332211 1122 256788888877764 4443 5689999999888777663
Q ss_pred CCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCcEEEEEeCC-CCeEEEEEc--C-CEEEEEECCCcEEEEe
Q 001455 1004 KGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAG-SKITSLLTA--N-DIVLCGTETGLIKGWI 1072 (1074)
Q Consensus 1004 H~~~VtsLafSPDG~~LaSGS~DGtIrIWDl~tg~~l~tL~~h-s~VtsLa~d--g-~~LaSGs~DG~IrIWd 1072 (1074)
-...|..+.|.. ..+++++..+.|.-|.+.. ..-...... ...++.+|+ + ++|-.++...++.|+.
T Consensus 245 ipa~v~~v~F~~--d~vl~~G~g~~v~~~~l~G-vl~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~~ 314 (325)
T KOG0649|consen 245 IPARVHLVDFVD--DCVLIGGEGNHVQSYTLNG-VLQANIPVESTACYSASWQTSPIKFISIAGFSNKLHILK 314 (325)
T ss_pred cccceeEeeeec--ceEEEeccccceeeeeecc-EEEEeccCCccceeeecccCCceEEEEecccceeeeeee
Confidence 334577777764 4677888788899887543 222223322 336666665 2 3666677777777764
No 186
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.37 E-value=1.8e-12 Score=159.05 Aligned_cols=204 Identities=19% Similarity=0.209 Sum_probs=151.5
Q ss_pred CCCCCcEEEEEEe---CCEEEEEECCCcEEEEECCCCCeeEEEEe--ccCCCCEEEEEEcCCCCE-EEEEeCCCeEEEEE
Q 001455 791 HKCSGAVTALIYY---KGLLCSGFSDGSIKMWDIKKQSAMLVWDV--KEHRKAVTSFSLFEPGES-LLSGSADKTIGVWQ 864 (1074)
Q Consensus 791 ~gH~~~VtsLafS---~~~LaSGs~DGtVrIWDl~t~~~~~i~tl--~gH~~~VtsLafSpdg~~-LaSGS~DGtIrIWD 864 (1074)
..|+|.|..+.|+ ++++|+|+.||.|.|||+...+.. .+. ..-.+.|.+++|+..-.+ |++++.+|.+.|||
T Consensus 113 ~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP--~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWD 190 (1049)
T KOG0307|consen 113 SKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETP--FTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWD 190 (1049)
T ss_pred cccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCC--CCCCCCCCcccceEeccchhhhHHhhccCCCCCceecc
Confidence 3799999999999 669999999999999999875431 222 224578999999876555 88999999999999
Q ss_pred ccCCceEEEEEeccCCCeEEEccCCCeEEEEecCCeEEEEeCCCceeeeecCCCeEEEEEe---CCEEEEEEC---CCcE
Q 001455 865 MVQRKLELIEVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSSRTLKDIYRSKGIKSMSVV---QGKIYIGCM---DSSI 938 (1074)
Q Consensus 865 l~tg~~~~~~~~~h~~~V~s~s~dg~~L~sgS~DgtI~VWDl~~~l~~l~~~~~V~sLa~s---dgkLlaGs~---DgsI 938 (1074)
++..+.+ ..++..+.. ..+..++|. ..++++++. .-.|
T Consensus 191 lr~~~pi-----------i~ls~~~~~-------------------------~~~S~l~WhP~~aTql~~As~dd~~Pvi 234 (1049)
T KOG0307|consen 191 LRKKKPI-----------IKLSDTPGR-------------------------MHCSVLAWHPDHATQLLVASGDDSAPVI 234 (1049)
T ss_pred ccCCCcc-----------cccccCCCc-------------------------cceeeeeeCCCCceeeeeecCCCCCcee
Confidence 9876432 222222111 012233332 122333332 2358
Q ss_pred EEEEccCCceeeeccccccccCCCCCeEEEEEcCCc-eEEEEEecCCCeEEEEECCCCCeEEEccCCCCCeEEEEEecCC
Q 001455 939 QELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDW-LYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDF 1017 (1074)
Q Consensus 939 ~IwDl~tg~~~~i~~~~r~~~~h~~~I~sL~~spd~-i~las~S~dDgtI~IWDl~t~~~i~~l~gH~~~VtsLafSPDG 1017 (1074)
.+||++.. ..+.+.+.+|...|.++.|.+.. .++++++ .|+.|.+|+.++++.+..+...+.++..+.|.|..
T Consensus 235 qlWDlR~a-----ssP~k~~~~H~~GilslsWc~~D~~lllSsg-kD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~ 308 (1049)
T KOG0307|consen 235 QLWDLRFA-----SSPLKILEGHQRGILSLSWCPQDPRLLLSSG-KDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRN 308 (1049)
T ss_pred Eeeccccc-----CCchhhhcccccceeeeccCCCCchhhhccc-CCCCeeEecCCCceEeeecCCCCcceeeeeecCCC
Confidence 88888762 24556778999999999999776 6666655 88999999999999999998888999999999955
Q ss_pred C-EEEEEECCCcEEEEECCCCc
Q 001455 1018 I-YLNYNSSASSLQIWLRGTQQ 1038 (1074)
Q Consensus 1018 ~-~LaSGS~DGtIrIWDl~tg~ 1038 (1074)
. .+++++-||.|.|+.+..+.
T Consensus 309 P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 309 PSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred cchhhhheeccceeeeeeecCC
Confidence 4 88889999999999976654
No 187
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.36 E-value=4e-11 Score=143.75 Aligned_cols=238 Identities=14% Similarity=0.127 Sum_probs=167.7
Q ss_pred CCcEEEEEEe---CCEEEEEECCCcEEEEECCCCCeeEE----EEeccCCCCEEEEEEcCCCCE--EEEEeCCCeEEEEE
Q 001455 794 SGAVTALIYY---KGLLCSGFSDGSIKMWDIKKQSAMLV----WDVKEHRKAVTSFSLFEPGES--LLSGSADKTIGVWQ 864 (1074)
Q Consensus 794 ~~~VtsLafS---~~~LaSGs~DGtVrIWDl~t~~~~~i----~tl~gH~~~VtsLafSpdg~~--LaSGS~DGtIrIWD 864 (1074)
..+|+|+.|+ +++++.|..+|.|.+||+..+...+. .....|..+|+.+.|..+-.. +++++.||.|..|+
T Consensus 242 ~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~ 321 (555)
T KOG1587|consen 242 PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWD 321 (555)
T ss_pred CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeee
Confidence 6899999999 66899999999999999987654211 222478999999999865554 99999999999998
Q ss_pred ccCCceE----EEEEec-------cCCCeEE--E-ccCCCeEEEEecCCeEEEEeCC---Cce--------eeeecCCCe
Q 001455 865 MVQRKLE----LIEVIA-------TKEPIRK--L-DTYGKTIFASTQGHRMKVIDSS---RTL--------KDIYRSKGI 919 (1074)
Q Consensus 865 l~tg~~~----~~~~~~-------h~~~V~s--~-s~dg~~L~sgS~DgtI~VWDl~---~~l--------~~l~~~~~V 919 (1074)
++.-... ...... ....+++ | ..+...+++|+.+|.|..-+-. ... ....+.+.|
T Consensus 322 ~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v 401 (555)
T KOG1587|consen 322 TDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPV 401 (555)
T ss_pred ccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcce
Confidence 7643220 000011 1112333 3 2466789999999988773322 111 122235678
Q ss_pred EEEEEe--CCEEEEEECCCcEEEEEccCCceeeeccccccccCCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCC--
Q 001455 920 KSMSVV--QGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRK-- 995 (1074)
Q Consensus 920 ~sLa~s--dgkLlaGs~DgsI~IwDl~tg~~~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S~dDgtI~IWDl~t~-- 995 (1074)
.++.++ ..+++..+.|.++++|..... ..|.-.+..+...+++++|+|....++.....+|.+.+||+...
T Consensus 402 ~~v~~nPF~~k~fls~gDW~vriWs~~~~-----~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~ 476 (555)
T KOG1587|consen 402 YAVSRNPFYPKNFLSVGDWTVRIWSEDVI-----ASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDE 476 (555)
T ss_pred EeeecCCCccceeeeeccceeEeccccCC-----CCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhcccc
Confidence 888886 444555444999999988731 22334455667779999999987766666667899999997543
Q ss_pred CeEEEccCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCC
Q 001455 996 PQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGT 1036 (1074)
Q Consensus 996 ~~i~~l~gH~~~VtsLafSPDG~~LaSGS~DGtIrIWDl~t 1036 (1074)
..+....-+....+.+.|+++|+.|++|...|++.+|++..
T Consensus 477 ~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 477 EPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred CCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 33444434466677888999999999999999999999754
No 188
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.36 E-value=1.2e-11 Score=143.29 Aligned_cols=225 Identities=13% Similarity=0.144 Sum_probs=169.5
Q ss_pred CCCCcEEEEEEe--CCEEEEEECCCcEEEEECCCCCeeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEccCCc
Q 001455 792 KCSGAVTALIYY--KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRK 869 (1074)
Q Consensus 792 gH~~~VtsLafS--~~~LaSGs~DGtVrIWDl~t~~~~~i~tl~gH~~~VtsLafSpdg~~LaSGS~DGtIrIWDl~tg~ 869 (1074)
+|.+.|+|++|+ |..+|+|+.|..|.+|+.+-.. +..+ .|.+.|.|+.|+|-...|+||+-.. .-+|......
T Consensus 51 gHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG---~LkY-SH~D~IQCMsFNP~~h~LasCsLsd-FglWS~~qK~ 125 (1081)
T KOG1538|consen 51 GHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEG---ILKY-SHNDAIQCMSFNPITHQLASCSLSD-FGLWSPEQKS 125 (1081)
T ss_pred cccceEEEEEEccCCceeccCCCceeEEEecccccc---eeee-ccCCeeeEeecCchHHHhhhcchhh-ccccChhhhh
Confidence 999999999999 5589999999999999976431 2232 7999999999999999999998653 5789876543
Q ss_pred eEEEEEeccCCCe--E--EEccCCCeEEEEecCCeEEEEeCCCceee--ee---cCCCeEEEEEe----CC---EEEEEE
Q 001455 870 LELIEVIATKEPI--R--KLDTYGKTIFASTQGHRMKVIDSSRTLKD--IY---RSKGIKSMSVV----QG---KIYIGC 933 (1074)
Q Consensus 870 ~~~~~~~~h~~~V--~--s~s~dg~~L~sgS~DgtI~VWDl~~~l~~--l~---~~~~V~sLa~s----dg---kLlaGs 933 (1074)
. ..++..+ . +|..+|++++.|-.+|+|.+-+-.+..+. -. .+.+|++++|. .| .+....
T Consensus 126 V-----~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~D 200 (1081)
T KOG1538|consen 126 V-----SKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVAD 200 (1081)
T ss_pred H-----HhhhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEe
Confidence 2 2233322 2 47789999999999999999987643332 22 24569999994 22 255578
Q ss_pred CCCcEEEEEccCCceeeeccccccccCCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEccCCCCCeEEEEE
Q 001455 934 MDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAV 1013 (1074)
Q Consensus 934 ~DgsI~IwDl~tg~~~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S~dDgtI~IWDl~t~~~i~~l~gH~~~VtsLaf 1013 (1074)
+..++.+|.+........ ..-+....++.+.++|.|+..++ .|+.+++|... |-.+.+......+|++++.
T Consensus 201 W~qTLSFy~LsG~~Igk~-------r~L~FdP~CisYf~NGEy~LiGG-sdk~L~~fTR~-GvrLGTvg~~D~WIWtV~~ 271 (1081)
T KOG1538|consen 201 WGQTLSFYQLSGKQIGKD-------RALNFDPCCISYFTNGEYILLGG-SDKQLSLFTRD-GVRLGTVGEQDSWIWTVQA 271 (1081)
T ss_pred ccceeEEEEecceeeccc-------ccCCCCchhheeccCCcEEEEcc-CCCceEEEeec-CeEEeeccccceeEEEEEE
Confidence 888888888876332211 11144567889999999998877 56778888754 4445666667789999999
Q ss_pred ecCCCEEEEEECCCcEEEEECC
Q 001455 1014 VEDFIYLNYNSSASSLQIWLRG 1035 (1074)
Q Consensus 1014 SPDG~~LaSGS~DGtIrIWDl~ 1035 (1074)
.|++++++.|+.||+|..|++-
T Consensus 272 ~PNsQ~v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 272 KPNSQYVVVGCQDGTIACYNLI 293 (1081)
T ss_pred ccCCceEEEEEccCeeehhhhH
Confidence 9999999999999999999743
No 189
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.36 E-value=8.7e-11 Score=130.41 Aligned_cols=204 Identities=13% Similarity=0.149 Sum_probs=150.8
Q ss_pred EeccCCCCEEEEEEcCCCCE-EEEEeCCCeEEEEEccCCceEEEEEeccCCCeEEEccCCCeEEEEecCCeEEEEeCCCc
Q 001455 831 DVKEHRKAVTSFSLFEPGES-LLSGSADKTIGVWQMVQRKLELIEVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSSRT 909 (1074)
Q Consensus 831 tl~gH~~~VtsLafSpdg~~-LaSGS~DGtIrIWDl~tg~~~~~~~~~h~~~V~s~s~dg~~L~sgS~DgtI~VWDl~~~ 909 (1074)
.+.||+++|..++|+|.++. |||||.|.+|.||++..+.+. ..+..+|..+..|.+.
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~----~~ltepvv~L~gH~rr------------------ 133 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLT----RDLTEPVVELYGHQRR------------------ 133 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccc----cCcccceEEEeeccee------------------
Confidence 35699999999999997766 899999999999999765432 2334455554444332
Q ss_pred eeeeecCCCeEEEEEe---CCEEEEEECCCcEEEEEccCCceeeeccccccccCCCCCeEEEEEcCCceEEEEEecCCCe
Q 001455 910 LKDIYRSKGIKSMSVV---QGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSN 986 (1074)
Q Consensus 910 l~~l~~~~~V~sLa~s---dgkLlaGs~DgsI~IwDl~tg~~~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S~dDgt 986 (1074)
|-.++|. .+-+++++.|..|.+||+.+|+.... ..|...|.++.|+.+|..+++.+ .|+.
T Consensus 134 ---------Vg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~-------l~hpd~i~S~sfn~dGs~l~Ttc-kDKk 196 (472)
T KOG0303|consen 134 ---------VGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALIT-------LDHPDMVYSMSFNRDGSLLCTTC-KDKK 196 (472)
T ss_pred ---------EEEEeecccchhhHhhccCCceEEEEeccCCceeee-------cCCCCeEEEEEeccCCceeeeec-ccce
Confidence 4444552 44577889999999999999875432 23889999999999999998877 8899
Q ss_pred EEEEECCCCCeEEEccCCCC-CeEEEEEecCCCEEEEEE---CCCcEEEEECCCCc---EEEEEeCCCCeEEEEEcC--C
Q 001455 987 IKEWRRHRKPQISIAPEKGT-TIQAMAVVEDFIYLNYNS---SASSLQIWLRGTQQ---KVGRISAGSKITSLLTAN--D 1057 (1074)
Q Consensus 987 I~IWDl~t~~~i~~l~gH~~-~VtsLafSPDG~~LaSGS---~DGtIrIWDl~tg~---~l~tL~~hs~VtsLa~dg--~ 1057 (1074)
|++||.++++.+..-.+|.+ .-..+.|-.+|.++-||- .+..+-+||..+.+ ...++...+.|.-=.||. .
T Consensus 197 vRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ 276 (472)
T KOG0303|consen 197 VRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTS 276 (472)
T ss_pred eEEEcCCCCcEeeecccccCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCC
Confidence 99999999999988878866 445567888888554443 57889999865543 356666666665544553 3
Q ss_pred E-EEEEECCCcEEEEec
Q 001455 1058 I-VLCGTETGLIKGWIP 1073 (1074)
Q Consensus 1058 ~-LaSGs~DG~IrIWdi 1073 (1074)
+ .++|-.||.||-|.+
T Consensus 277 ivYl~GKGD~~IRYyEi 293 (472)
T KOG0303|consen 277 IVYLCGKGDSSIRYFEI 293 (472)
T ss_pred EEEEEecCCcceEEEEe
Confidence 4 446778999998864
No 190
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.35 E-value=5.1e-11 Score=141.23 Aligned_cols=229 Identities=10% Similarity=0.016 Sum_probs=155.0
Q ss_pred CCcEEEEECCCCCeeEEEEeccCCCCEEEEEEcCCCCEEEEEeCC---CeEEEEEccCCceEEEEEeccCCCeEEEccCC
Q 001455 813 DGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSAD---KTIGVWQMVQRKLELIEVIATKEPIRKLDTYG 889 (1074)
Q Consensus 813 DGtVrIWDl~t~~~~~i~tl~gH~~~VtsLafSpdg~~LaSGS~D---GtIrIWDl~tg~~~~~~~~~h~~~V~s~s~dg 889 (1074)
+..|.+||.+... ...+..|...+.+.+|+|||+.|+.++.+ ..|++||+.+++............-..|+|+|
T Consensus 183 ~~~i~i~d~dg~~---~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG 259 (429)
T PRK01742 183 PYEVRVADYDGFN---QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFSPDG 259 (429)
T ss_pred eEEEEEECCCCCC---ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeECCCC
Confidence 5789999998764 34566788899999999999999887654 46999999888643332221112234689999
Q ss_pred CeEEEEe-cCCeEEEE--eCC-Cceeeeec-CCCeEEEEEe-CCE-EEE-EECCCcEEEEEccCCceeeeccccccccCC
Q 001455 890 KTIFAST-QGHRMKVI--DSS-RTLKDIYR-SKGIKSMSVV-QGK-IYI-GCMDSSIQELAVSNNVEREIKAPFKSWRLQ 961 (1074)
Q Consensus 890 ~~L~sgS-~DgtI~VW--Dl~-~~l~~l~~-~~~V~sLa~s-dgk-Lla-Gs~DgsI~IwDl~tg~~~~i~~~~r~~~~h 961 (1074)
+.++.++ .+|.+.+| |+. +....+.. ...+....|+ ||+ ++. +..+|..++|++........ .. .+
T Consensus 260 ~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~-----~l-~~ 333 (429)
T PRK01742 260 SRLAFASSKDGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGAS-----LV-GG 333 (429)
T ss_pred CEEEEEEecCCcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeE-----Ee-cC
Confidence 9888765 67765555 554 33333433 3346678886 776 554 44578888888754221111 11 11
Q ss_pred CCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEccCCCCCeEEEEEecCCCEEEEEECCCcEEEEEC--CCCcE
Q 001455 962 SKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLR--GTQQK 1039 (1074)
Q Consensus 962 ~~~I~sL~~spd~i~las~S~dDgtI~IWDl~t~~~i~~l~gH~~~VtsLafSPDG~~LaSGS~DGtIrIWDl--~tg~~ 1039 (1074)
.. ....++|++.+++..+ .+ .+..||+.++........+ ...++.|+|||++|++++.+|.+.+|.+ .+|..
T Consensus 334 ~~--~~~~~SpDG~~ia~~~-~~-~i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~ 407 (429)
T PRK01742 334 RG--YSAQISADGKTLVMIN-GD-NVVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRF 407 (429)
T ss_pred CC--CCccCCCCCCEEEEEc-CC-CEEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCc
Confidence 21 3467899998887665 34 4666999888754433222 3456789999999999999999998885 46888
Q ss_pred EEEEeCC-CCeEEEEEcC
Q 001455 1040 VGRISAG-SKITSLLTAN 1056 (1074)
Q Consensus 1040 l~tL~~h-s~VtsLa~dg 1056 (1074)
+.++..| +.+...+|++
T Consensus 408 ~~~l~~~~g~~~~p~wsp 425 (429)
T PRK01742 408 KARLPGSDGQVKFPAWSP 425 (429)
T ss_pred eEEccCCCCCCCCcccCC
Confidence 8888876 4477777775
No 191
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.34 E-value=1e-10 Score=143.84 Aligned_cols=247 Identities=16% Similarity=0.173 Sum_probs=170.1
Q ss_pred EECCCCCeeEEEEeccCCCCEEEEEEcCCC-CEEEEEeCCCeEEEEEccCC--c---eEEEE-EeccCCCeEE--EccCC
Q 001455 819 WDIKKQSAMLVWDVKEHRKAVTSFSLFEPG-ESLLSGSADKTIGVWQMVQR--K---LELIE-VIATKEPIRK--LDTYG 889 (1074)
Q Consensus 819 WDl~t~~~~~i~tl~gH~~~VtsLafSpdg-~~LaSGS~DGtIrIWDl~tg--~---~~~~~-~~~h~~~V~s--~s~dg 889 (1074)
|+.++ ..+..+..|...|..++.++.. .+++|||.||+|++||.+.- . ..... .......+.+ +.+.+
T Consensus 1034 W~p~G---~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~ 1110 (1431)
T KOG1240|consen 1034 WNPRG---ILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNG 1110 (1431)
T ss_pred CCccc---eEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCC
Confidence 55543 4678889999999999988665 89999999999999998641 1 11111 1123444544 56889
Q ss_pred CeEEEEecCCeEEEEeCCCc--eee---------eecCCC-eEEEEEe---CC-EEEEEECCCcEEEEEccCCceeeecc
Q 001455 890 KTIFASTQGHRMKVIDSSRT--LKD---------IYRSKG-IKSMSVV---QG-KIYIGCMDSSIQELAVSNNVEREIKA 953 (1074)
Q Consensus 890 ~~L~sgS~DgtI~VWDl~~~--l~~---------l~~~~~-V~sLa~s---dg-kLlaGs~DgsI~IwDl~tg~~~~i~~ 953 (1074)
+.+++++.||.|.+.+++.. .+. ....+. |..-++. .. .++.+..-+.|..||++........
T Consensus 1111 ~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~l- 1189 (1431)
T KOG1240|consen 1111 DQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRL- 1189 (1431)
T ss_pred CeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhh-
Confidence 99999999999999998741 110 111222 3333442 23 3566888899999999874432211
Q ss_pred ccccccCCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEc-cCCCCCeEEEEEecC---CCEEEEEE--CCC
Q 001455 954 PFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIA-PEKGTTIQAMAVVED---FIYLNYNS--SAS 1027 (1074)
Q Consensus 954 ~~r~~~~h~~~I~sL~~spd~i~las~S~dDgtI~IWDl~t~~~i~~l-~gH~~~VtsLafSPD---G~~LaSGS--~DG 1027 (1074)
......+.|++++.+|.+.+++.++ ..|.+.+||++-+..+... .++..+++.+..+|- ..+.++++ ..+
T Consensus 1190 ---k~~~~hG~vTSi~idp~~~WlviGt-s~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~n 1265 (1431)
T KOG1240|consen 1190 ---KNQLRHGLVTSIVIDPWCNWLVIGT-SRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNN 1265 (1431)
T ss_pred ---hcCccccceeEEEecCCceEEEEec-CCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCC
Confidence 1123467899999999999999887 6688999999887766543 345578888887763 24555544 578
Q ss_pred cEEEEECCCCcEEEEEeCCCC---------------------eEEEEEc-CCEEEEEECCCcEEEEec
Q 001455 1028 SLQIWLRGTQQKVGRISAGSK---------------------ITSLLTA-NDIVLCGTETGLIKGWIP 1073 (1074)
Q Consensus 1028 tIrIWDl~tg~~l~tL~~hs~---------------------VtsLa~d-g~~LaSGs~DG~IrIWdi 1073 (1074)
.|.+|++.+|.+-.++..... +.+.-.+ +.++++|+.|+.|+.||+
T Consensus 1266 evs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~ 1333 (1431)
T KOG1240|consen 1266 EVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDP 1333 (1431)
T ss_pred ceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccC
Confidence 899999999988777764311 1111122 458999999999999996
No 192
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.32 E-value=8.4e-11 Score=134.61 Aligned_cols=216 Identities=11% Similarity=0.144 Sum_probs=154.7
Q ss_pred CEEEEEEcCCCCEEEEEeCCCeEEEEEccCCceE----EEEEeccCCCe-EEE-----ccCCCeEEEEecCCeEEEEeCC
Q 001455 838 AVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLE----LIEVIATKEPI-RKL-----DTYGKTIFASTQGHRMKVIDSS 907 (1074)
Q Consensus 838 ~VtsLafSpdg~~LaSGS~DGtIrIWDl~tg~~~----~~~~~~h~~~V-~s~-----s~dg~~L~sgS~DgtI~VWDl~ 907 (1074)
.++...++-.|++|+-.- ...+.+|+.+.+... .........+. ..| .+.+--++.|-.-|.|.+.|..
T Consensus 125 ~~~~~~~~~~gd~lcFnv-g~~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~ 203 (636)
T KOG2394|consen 125 IVTNTNQSGKGDRLCFNV-GRELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPI 203 (636)
T ss_pred ceeeccccCCCCEEEEec-CCeEEEEEccCcchhccchhhhcccCCCCceecccccccCCCCcceEEeeccCceEEecch
Confidence 445555556666655332 335788887743211 11112222222 223 3556678888888888888865
Q ss_pred C-ceee------eecCCCeEEEEEe---CCEEEEEECCCcEEEEEccCC----------------------ceeeecccc
Q 001455 908 R-TLKD------IYRSKGIKSMSVV---QGKIYIGCMDSSIQELAVSNN----------------------VEREIKAPF 955 (1074)
Q Consensus 908 ~-~l~~------l~~~~~V~sLa~s---dgkLlaGs~DgsI~IwDl~tg----------------------~~~~i~~~~ 955 (1074)
. .... ......|+|+.|- ++.+++.-.+|.+++||.... +......|+
T Consensus 204 ~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv 283 (636)
T KOG2394|consen 204 NFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPV 283 (636)
T ss_pred hhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCcc
Confidence 2 1111 1123569999994 566888899999999976321 111122445
Q ss_pred ccccCCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEccCCCCCeEEEEEecCCCEEEEEECCCcEEEEECC
Q 001455 956 KSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRG 1035 (1074)
Q Consensus 956 r~~~~h~~~I~sL~~spd~i~las~S~dDgtI~IWDl~t~~~i~~l~gH~~~VtsLafSPDG~~LaSGS~DGtIrIWDl~ 1035 (1074)
..|......|+.++|+|||.++++.+ .||.++|||..+.+++..++.--+...|++|||||+||++|++|.-|.||.+.
T Consensus 284 ~~w~~~~g~in~f~FS~DG~~LA~VS-qDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~ 362 (636)
T KOG2394|consen 284 ARWHIGEGSINEFAFSPDGKYLATVS-QDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFE 362 (636)
T ss_pred ceeEeccccccceeEcCCCceEEEEe-cCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEec
Confidence 55655567899999999999999988 89999999999988877776667789999999999999999999999999999
Q ss_pred CCcEEEEEeCC-CCeEEEEEc
Q 001455 1036 TQQKVGRISAG-SKITSLLTA 1055 (1074)
Q Consensus 1036 tg~~l~tL~~h-s~VtsLa~d 1055 (1074)
..+.+..-++| ++|+.|+||
T Consensus 363 erRVVARGqGHkSWVs~VaFD 383 (636)
T KOG2394|consen 363 ERRVVARGQGHKSWVSVVAFD 383 (636)
T ss_pred cceEEEeccccccceeeEeec
Confidence 99999999999 669999988
No 193
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.32 E-value=7.1e-11 Score=131.71 Aligned_cols=241 Identities=12% Similarity=0.213 Sum_probs=160.4
Q ss_pred cCCCCCcEEEEEEe--CCEEEEEECCCcEEEEECC--------C------CCeeEEEEeccCCCCEEEEEEcCCCCEEEE
Q 001455 790 SHKCSGAVTALIYY--KGLLCSGFSDGSIKMWDIK--------K------QSAMLVWDVKEHRKAVTSFSLFEPGESLLS 853 (1074)
Q Consensus 790 ~~gH~~~VtsLafS--~~~LaSGs~DGtVrIWDl~--------t------~~~~~i~tl~gH~~~VtsLafSpdg~~LaS 853 (1074)
...|...|+++.|+ ++.+|||+.+|.|.+|... + ........+.+|...|..++|+|++.++++
T Consensus 61 Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s 140 (434)
T KOG1009|consen 61 LSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVS 140 (434)
T ss_pred ccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeee
Confidence 34899999999999 5699999999999999766 2 223355667899999999999999999999
Q ss_pred EeCCCeEEEEEccCCceEEEEEeccCCCeE--EEccCCCeEEEEecCCeEEEEeCC--Cc--------------------
Q 001455 854 GSADKTIGVWQMVQRKLELIEVIATKEPIR--KLDTYGKTIFASTQGHRMKVIDSS--RT-------------------- 909 (1074)
Q Consensus 854 GS~DGtIrIWDl~tg~~~~~~~~~h~~~V~--s~s~dg~~L~sgS~DgtI~VWDl~--~~-------------------- 909 (1074)
|+.|.++++||+..|+... ....|...+. +++|.++++++-+.|...+.+++. +.
T Consensus 141 ~s~dns~~l~Dv~~G~l~~-~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~ 219 (434)
T KOG1009|consen 141 GSVDNSVRLWDVHAGQLLA-ILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGK 219 (434)
T ss_pred eeccceEEEEEeccceeEe-eccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcc
Confidence 9999999999999998654 4556776665 567888899998888866666654 10
Q ss_pred eeeeecCCC----eEEEEEe-CCEEEE---EE--CCCcE-----EEEEccCCceeeeccccccccCCCCCeEEEEEcCC-
Q 001455 910 LKDIYRSKG----IKSMSVV-QGKIYI---GC--MDSSI-----QELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKD- 973 (1074)
Q Consensus 910 l~~l~~~~~----V~sLa~s-dgkLla---Gs--~DgsI-----~IwDl~tg~~~~i~~~~r~~~~h~~~I~sL~~spd- 973 (1074)
...+.+... .+.++|+ +|.++. |+ .++.+ ++|+-.. .+.|.-.+..-..+...+.++|-
T Consensus 220 s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~-----l~rP~~~lp~~~k~~lavr~~pVy 294 (434)
T KOG1009|consen 220 STRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKD-----LKRPAARLPSPKKPALAVRFSPVY 294 (434)
T ss_pred eeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeecccc-----ccCceeecCCCCcceEEEEeeeeE
Confidence 011111111 2234454 666443 21 12222 3333221 11122222233444444444321
Q ss_pred -----------------c-eEEEEEecCCCeEEEEECCCCCeEE-EccCCCCCeEEEEEecCCCEEEEEECCCcEEEEEC
Q 001455 974 -----------------W-LYSASSSVEGSNIKEWRRHRKPQIS-IAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLR 1034 (1074)
Q Consensus 974 -----------------~-i~las~S~dDgtI~IWDl~t~~~i~-~l~gH~~~VtsLafSPDG~~LaSGS~DGtIrIWDl 1034 (1074)
+ ++.++. ...+.+||.++-.++. .-.-|-..++.++|++||.+++..|.||...+-..
T Consensus 295 ~elrp~~~~~~~~~lpyrlvfaiAt---~~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtf 371 (434)
T KOG1009|consen 295 YELRPLSSEKFLFVLPYRLVFAIAT---KNSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTF 371 (434)
T ss_pred EEeccccccccccccccceEEEEee---cceEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEEEEE
Confidence 1 222222 3579999988765443 33458889999999999999999999998877665
Q ss_pred CCCcE
Q 001455 1035 GTQQK 1039 (1074)
Q Consensus 1035 ~tg~~ 1039 (1074)
+.++.
T Consensus 372 e~~el 376 (434)
T KOG1009|consen 372 EPWEL 376 (434)
T ss_pred cchhc
Confidence 55443
No 194
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.29 E-value=4.4e-11 Score=134.19 Aligned_cols=200 Identities=15% Similarity=0.174 Sum_probs=132.8
Q ss_pred EEEEEe--CCEEEEEECCCcEEEEECCCCCeeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEccCCceEEEEE
Q 001455 798 TALIYY--KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEV 875 (1074)
Q Consensus 798 tsLafS--~~~LaSGs~DGtVrIWDl~t~~~~~i~tl~gH~~~VtsLafSpdg~~LaSGS~DGtIrIWDl~tg~~~~~~~ 875 (1074)
.+++|+ +..+++|+.||++|||+..+.. .+.....|.+.|.++.|+|||+.|++.+.| ..+||++++|.......
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~--t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t 224 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSML--TILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKT 224 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcch--hhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcC
Confidence 677887 5789999999999999976553 256667899999999999999999999999 89999999984332221
Q ss_pred eccCCCeE---EEccCCCeEEEEecCCeEEEEeCCCceeeeecCCCeEEEEEeCCEEEEEECCCcEEEEEccCCceeeec
Q 001455 876 IATKEPIR---KLDTYGKTIFASTQGHRMKVIDSSRTLKDIYRSKGIKSMSVVQGKIYIGCMDSSIQELAVSNNVEREIK 952 (1074)
Q Consensus 876 ~~h~~~V~---s~s~dg~~L~sgS~DgtI~VWDl~~~l~~l~~~~~V~sLa~sdgkLlaGs~DgsI~IwDl~tg~~~~i~ 952 (1074)
...+.... .|..++. . .++++... ....+.|+.||+..-.... .
T Consensus 225 ~~~k~~~~~~cRF~~d~~------~-~~l~laa~-------------------------~~~~~~v~~~~~~~w~~~~-~ 271 (398)
T KOG0771|consen 225 PFSKDEMFSSCRFSVDNA------Q-ETLRLAAS-------------------------QFPGGGVRLCDISLWSGSN-F 271 (398)
T ss_pred CcccchhhhhceecccCC------C-ceEEEEEe-------------------------cCCCCceeEEEeeeecccc-c
Confidence 11111111 1222220 0 01111111 0111222223222111000 0
Q ss_pred cccccccCCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEE-ccCCCCCeEEEEEecCCCEEEEEECCCcEEE
Q 001455 953 APFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISI-APEKGTTIQAMAVVEDFIYLNYNSSASSLQI 1031 (1074)
Q Consensus 953 ~~~r~~~~h~~~I~sL~~spd~i~las~S~dDgtI~IWDl~t~~~i~~-l~gH~~~VtsLafSPDG~~LaSGS~DGtIrI 1031 (1074)
...+........|.+++++++|.+++.++ .||.|.+++..+-+.++. ...|...|+.+.|+||.+++++-+.|..+.+
T Consensus 272 l~~~~~~~~~~siSsl~VS~dGkf~AlGT-~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v 350 (398)
T KOG0771|consen 272 LRLRKKIKRFKSISSLAVSDDGKFLALGT-MDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAV 350 (398)
T ss_pred cchhhhhhccCcceeEEEcCCCcEEEEec-cCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeE
Confidence 00111122356899999999999999887 589999999877665554 4579999999999999999999999998888
Q ss_pred EEC
Q 001455 1032 WLR 1034 (1074)
Q Consensus 1032 WDl 1034 (1074)
..+
T Consensus 351 ~~l 353 (398)
T KOG0771|consen 351 TKL 353 (398)
T ss_pred EEE
Confidence 764
No 195
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.28 E-value=1.3e-10 Score=124.62 Aligned_cols=215 Identities=10% Similarity=0.089 Sum_probs=146.0
Q ss_pred CCeEEEEEccCC--ceEEEEEeccCCCeEEEc--cCC-CeEEEEecC-------CeEEEEeCCCceee-----------e
Q 001455 857 DKTIGVWQMVQR--KLELIEVIATKEPIRKLD--TYG-KTIFASTQG-------HRMKVIDSSRTLKD-----------I 913 (1074)
Q Consensus 857 DGtIrIWDl~tg--~~~~~~~~~h~~~V~s~s--~dg-~~L~sgS~D-------gtI~VWDl~~~l~~-----------l 913 (1074)
|+.|.+-++..+ ......+..+.+.|..++ |.. ..++++..+ ....+|.+...... +
T Consensus 39 dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~L 118 (370)
T KOG1007|consen 39 DNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASL 118 (370)
T ss_pred cceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcC
Confidence 566766655543 333334445666677664 333 345554332 25779998743322 1
Q ss_pred e--cCCCeEEEEEe-CCEEEEEECCCcEEEEEccCCceeeeccccccccCCCCCeEEEEEcC--CceEEEEEecCCCeEE
Q 001455 914 Y--RSKGIKSMSVV-QGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYK--DWLYSASSSVEGSNIK 988 (1074)
Q Consensus 914 ~--~~~~V~sLa~s-dgkLlaGs~DgsI~IwDl~tg~~~~i~~~~r~~~~h~~~I~sL~~sp--d~i~las~S~dDgtI~ 988 (1074)
. ..+.|.|+.|. ++.-+++-.|..|.+|++..+..+....+...-..+....++-.++| ++..+++.+ |+++.
T Consensus 119 dteavg~i~cvew~Pns~klasm~dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~--d~tl~ 196 (370)
T KOG1007|consen 119 DTEAVGKINCVEWEPNSDKLASMDDNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS--DSTLQ 196 (370)
T ss_pred CHHHhCceeeEEEcCCCCeeEEeccCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeC--CCcEE
Confidence 1 13468999994 66555555699999999988665322111111122344455556655 566666664 89999
Q ss_pred EEECCCCCeEE-EccCCCCCeEEEEEecCCC-EEEEEECCCcEEEEECC-CCcEEEEEeCC-CCeEEEEEc---CCEEEE
Q 001455 989 EWRRHRKPQIS-IAPEKGTTIQAMAVVEDFI-YLNYNSSASSLQIWLRG-TQQKVGRISAG-SKITSLLTA---NDIVLC 1061 (1074)
Q Consensus 989 IWDl~t~~~i~-~l~gH~~~VtsLafSPDG~-~LaSGS~DGtIrIWDl~-tg~~l~tL~~h-s~VtsLa~d---g~~LaS 1061 (1074)
.||.++..... .-..|+..|..+.|.|+-+ +|+||+.||.|+|||.+ +..++.++.+| ++|+++.|+ .+.+++
T Consensus 197 ~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs 276 (370)
T KOG1007|consen 197 FWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILS 276 (370)
T ss_pred EEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEe
Confidence 99998765443 4457889999999999876 57899999999999965 56679999999 569999987 569999
Q ss_pred EECCCcEEEEec
Q 001455 1062 GTETGLIKGWIP 1073 (1074)
Q Consensus 1062 Gs~DG~IrIWdi 1073 (1074)
||.|..|.+|..
T Consensus 277 ~~SDs~V~Lsca 288 (370)
T KOG1007|consen 277 GGSDSAVNLSCA 288 (370)
T ss_pred cCCCceeEEEec
Confidence 999999999864
No 196
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.25 E-value=2.4e-11 Score=137.09 Aligned_cols=226 Identities=13% Similarity=0.125 Sum_probs=178.5
Q ss_pred CEEEEEEcCCCCEEEEEeCCCeEEEEEccCCceEEEEEeccCCCeEEEc-cCCCeEEEEecCCeEEEEeCCC-ceeeeec
Q 001455 838 AVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATKEPIRKLD-TYGKTIFASTQGHRMKVIDSSR-TLKDIYR 915 (1074)
Q Consensus 838 ~VtsLafSpdg~~LaSGS~DGtIrIWDl~tg~~~~~~~~~h~~~V~s~s-~dg~~L~sgS~DgtI~VWDl~~-~l~~l~~ 915 (1074)
+-..+.++.+|.+|+.|+.-|.|-.+|..++++.+.. .....|..+. -|...++++.+...++|||-.+ .+..+..
T Consensus 131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei--~v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~GtElHClk~ 208 (545)
T KOG1272|consen 131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEI--NVMETVRDVTFLHNEQFFAVAQKKYVYVYDNNGTELHCLKR 208 (545)
T ss_pred CCeeeeecCCccEEEecCCccceeeeecccceeeeee--ehhhhhhhhhhhcchHHHHhhhhceEEEecCCCcEEeehhh
Confidence 4567889999999999999999999999998865432 2233344433 3555666777888999999774 4555666
Q ss_pred CCCeEEEEEe-CCE-EEEEECCCcEEEEEccCCceeeeccccccccCCCCCeEEEEEcCCceEEEEEecCCCeEEEEECC
Q 001455 916 SKGIKSMSVV-QGK-IYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRH 993 (1074)
Q Consensus 916 ~~~V~sLa~s-dgk-LlaGs~DgsI~IwDl~tg~~~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S~dDgtI~IWDl~ 993 (1074)
...|..+.|- .-. +++++..|.+..-|+.+|+.... +......+..+..+|-...+-.+. ..|+|.+|...
T Consensus 209 ~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~------~~t~~G~~~vm~qNP~NaVih~Gh-snGtVSlWSP~ 281 (545)
T KOG1272|consen 209 HIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVAS------IRTGAGRTDVMKQNPYNAVIHLGH-SNGTVSLWSPN 281 (545)
T ss_pred cCchhhhcccchhheeeecccCCceEEEeechhhhhHH------HHccCCccchhhcCCccceEEEcC-CCceEEecCCC
Confidence 7788888884 333 55688899999999999886432 233466777777777666555555 67899999999
Q ss_pred CCCeEEEccCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCeEEEEEcCCEEEEEECCCcEEEEe
Q 001455 994 RKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAGSKITSLLTANDIVLCGTETGLIKGWI 1072 (1074)
Q Consensus 994 t~~~i~~l~gH~~~VtsLafSPDG~~LaSGS~DGtIrIWDl~tg~~l~tL~~hs~VtsLa~dg~~LaSGs~DG~IrIWd 1072 (1074)
..+.+..+-.|.++|.++++.++|+|++|.|.|..++|||++....+.++....+...++++.+-+++.|....|.||.
T Consensus 282 skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~SqkglLA~~~G~~v~iw~ 360 (545)
T KOG1272|consen 282 SKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHPASNLSLSQKGLLALSYGDHVQIWK 360 (545)
T ss_pred CcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeecCCCccccccccccceeeecCCeeeeeh
Confidence 9888877889999999999999999999999999999999999888888877667888999988677777777899995
No 197
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.25 E-value=6.4e-09 Score=115.35 Aligned_cols=229 Identities=13% Similarity=0.158 Sum_probs=161.3
Q ss_pred CCcEEEEEEe-CC-EEEEEECCCcEEEEECCCCCeeEEEEeccCCCCEEEEEEcCCCCEEEEEeC--CCeEEEEEccCCc
Q 001455 794 SGAVTALIYY-KG-LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSA--DKTIGVWQMVQRK 869 (1074)
Q Consensus 794 ~~~VtsLafS-~~-~LaSGs~DGtVrIWDl~t~~~~~i~tl~gH~~~VtsLafSpdg~~LaSGS~--DGtIrIWDl~tg~ 869 (1074)
...+..+.|+ +. .|..|+.|| -++|+...... ........-.|--+-|+. ..+|..+. -+.+++.+++.+.
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k--~~~~~~~~~~IvEmLFSS--SLvaiV~~~qpr~Lkv~~~Kk~~ 79 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEK--CFSKDTEGVSIVEMLFSS--SLVAIVSIKQPRKLKVVHFKKKT 79 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHH--hhcccCCCeEEEEeeccc--ceeEEEecCCCceEEEEEcccCc
Confidence 4566777788 44 577777777 46787765321 111111223455555644 44444433 3458999998887
Q ss_pred eEEEEEeccCCCeEEEccCCCeEEEEecCCeEEEEeCC--Cceeeeec----CCCeEEEEEe-CCEEEE--E-ECCCcEE
Q 001455 870 LELIEVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSS--RTLKDIYR----SKGIKSMSVV-QGKIYI--G-CMDSSIQ 939 (1074)
Q Consensus 870 ~~~~~~~~h~~~V~s~s~dg~~L~sgS~DgtI~VWDl~--~~l~~l~~----~~~V~sLa~s-dgkLla--G-s~DgsI~ 939 (1074)
.+|.... ..+|.++.-+.++++++-.+. |+|||++ +.+.++.. ..++..++++ .+-.++ + ...|.|+
T Consensus 80 ~ICe~~f--pt~IL~VrmNr~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~ 156 (391)
T KOG2110|consen 80 TICEIFF--PTSILAVRMNRKRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVV 156 (391)
T ss_pred eEEEEec--CCceEEEEEccceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEE
Confidence 7775544 456888888888888887766 9999998 33333332 3346666665 333333 3 3578999
Q ss_pred EEEccCCceeeeccccccccCCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEccCCC--CCeEEEEEecCC
Q 001455 940 ELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKG--TTIQAMAVVEDF 1017 (1074)
Q Consensus 940 IwDl~tg~~~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S~dDgtI~IWDl~t~~~i~~l~gH~--~~VtsLafSPDG 1017 (1074)
+||+.+-+. +..+..|..++.+++|+++|..+++++..+..||+|.+.+|+.+..+.--. ..|.+++|+||+
T Consensus 157 l~d~~nl~~------v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds 230 (391)
T KOG2110|consen 157 LFDTINLQP------VNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDS 230 (391)
T ss_pred EEEccccee------eeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCC
Confidence 999988433 345578999999999999999999999666678999999999888775432 368899999999
Q ss_pred CEEEEEECCCcEEEEECCC
Q 001455 1018 IYLNYNSSASSLQIWLRGT 1036 (1074)
Q Consensus 1018 ~~LaSGS~DGtIrIWDl~t 1036 (1074)
++|++.|..++|+||.+++
T Consensus 231 ~~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 231 QFLAASSNTETVHIFKLEK 249 (391)
T ss_pred CeEEEecCCCeEEEEEecc
Confidence 9999999999999997654
No 198
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.25 E-value=2.1e-09 Score=117.14 Aligned_cols=230 Identities=11% Similarity=0.099 Sum_probs=159.7
Q ss_pred CEEEEEEcCCCCEEEEEeCCCeEEEEEccCCceEEE-EEeccCCCeEEEccCCCeEEEEe-cC------CeEEEEeCC--
Q 001455 838 AVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELI-EVIATKEPIRKLDTYGKTIFAST-QG------HRMKVIDSS-- 907 (1074)
Q Consensus 838 ~VtsLafSpdg~~LaSGS~DGtIrIWDl~tg~~~~~-~~~~h~~~V~s~s~dg~~L~sgS-~D------gtI~VWDl~-- 907 (1074)
...+++|+.|...++.|..+| .+||+.+.-+.... ......-.+..+-...++++.++ .+ +.|.|||-.
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~ 85 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKE 85 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccC
Confidence 345599999998888888666 69999875221110 01111111222233445544433 33 379999944
Q ss_pred CceeeeecCCCeEEEEEeCCEEEEEECCCcEEEEEccCCce-eeeccccccccCCCCCeEEEEEcCCceEEEEEecCCCe
Q 001455 908 RTLKDIYRSKGIKSMSVVQGKIYIGCMDSSIQELAVSNNVE-REIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSN 986 (1074)
Q Consensus 908 ~~l~~l~~~~~V~sLa~sdgkLlaGs~DgsI~IwDl~tg~~-~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S~dDgt 986 (1074)
++...+.....|.++.+..+++++.- .+.|++|...++-. ..... . ......+.++..+.+..+++.-+..-|.
T Consensus 86 ~~i~el~f~~~I~~V~l~r~riVvvl-~~~I~VytF~~n~k~l~~~e---t-~~NPkGlC~~~~~~~k~~LafPg~k~Gq 160 (346)
T KOG2111|consen 86 RCIIELSFNSEIKAVKLRRDRIVVVL-ENKIYVYTFPDNPKLLHVIE---T-RSNPKGLCSLCPTSNKSLLAFPGFKTGQ 160 (346)
T ss_pred cEEEEEEeccceeeEEEcCCeEEEEe-cCeEEEEEcCCChhheeeee---c-ccCCCceEeecCCCCceEEEcCCCccce
Confidence 56666777889999999877766544 57899999875321 11110 0 1112335666666665566555545689
Q ss_pred EEEEECCCCCe--EEEccCCCCCeEEEEEecCCCEEEEEECCCc-EEEEECCCCcEEEEEeCC---CCeEEEEEcC--CE
Q 001455 987 IKEWRRHRKPQ--ISIAPEKGTTIQAMAVVEDFIYLNYNSSASS-LQIWLRGTQQKVGRISAG---SKITSLLTAN--DI 1058 (1074)
Q Consensus 987 I~IWDl~t~~~--i~~l~gH~~~VtsLafSPDG~~LaSGS~DGt-IrIWDl~tg~~l~tL~~h---s~VtsLa~dg--~~ 1058 (1074)
|++-|+..... ...+..|...|.+++.+-+|..+||+|..|+ |||||..+|+++..+..+ ..|.+++|++ .+
T Consensus 161 vQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~ 240 (346)
T KOG2111|consen 161 VQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSW 240 (346)
T ss_pred EEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccE
Confidence 99999765544 4677899999999999999999999999987 799999999999999866 3499999874 49
Q ss_pred EEEEECCCcEEEEec
Q 001455 1059 VLCGTETGLIKGWIP 1073 (1074)
Q Consensus 1059 LaSGs~DG~IrIWdi 1073 (1074)
|+++|+-|+|+||.+
T Consensus 241 LavsSdKgTlHiF~l 255 (346)
T KOG2111|consen 241 LAVSSDKGTLHIFSL 255 (346)
T ss_pred EEEEcCCCeEEEEEe
Confidence 999999999999964
No 199
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.25 E-value=9.1e-10 Score=132.74 Aligned_cols=267 Identities=14% Similarity=0.085 Sum_probs=180.8
Q ss_pred EEe-CCEEEEEECCCcEEEEECCCCCeeEEEEeccCCCCEEEEEEcCCCC---EEEEEeCCCeEEEEEccCCceEEEEEe
Q 001455 801 IYY-KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGE---SLLSGSADKTIGVWQMVQRKLELIEVI 876 (1074)
Q Consensus 801 afS-~~~LaSGs~DGtVrIWDl~t~~~~~i~tl~gH~~~VtsLafSpdg~---~LaSGS~DGtIrIWDl~tg~~~~~~~~ 876 (1074)
.|+ ++..+-+..+..|.||...++.+ +..+.+|..+++.+.+.|... ++++++.||+|++||...+.+..+...
T Consensus 23 vfSnD~k~l~~~~~~~V~VyS~~Tg~~--i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~ 100 (792)
T KOG1963|consen 23 VFSNDAKFLFLCTGNFVKVYSTATGEC--ITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDN 100 (792)
T ss_pred ccccCCcEEEEeeCCEEEEEecchHhh--hhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEec
Confidence 455 66677777788999999999976 678999999999999988765 477999999999999998876554433
Q ss_pred ccCCCeEEEcc---CCCeEE-EEecCC------------eEEEEeCCCce----eeeecCCCeEEEEEe-CCEEEEEECC
Q 001455 877 ATKEPIRKLDT---YGKTIF-ASTQGH------------RMKVIDSSRTL----KDIYRSKGIKSMSVV-QGKIYIGCMD 935 (1074)
Q Consensus 877 ~h~~~V~s~s~---dg~~L~-sgS~Dg------------tI~VWDl~~~l----~~l~~~~~V~sLa~s-dgkLlaGs~D 935 (1074)
...-.+..+.+ +....+ .+..+. +++-+.+.... .....+..-.++.+. .|.+.....+
T Consensus 101 ~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~~~ 180 (792)
T KOG1963|consen 101 NLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIVHM 180 (792)
T ss_pred CCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEEEEe
Confidence 32222222211 111111 111111 11111111000 000011112455554 6677777788
Q ss_pred CcEEEEEccCCceeeeccccccccCCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCC----CCeEEEccCCCCCeEEE
Q 001455 936 SSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHR----KPQISIAPEKGTTIQAM 1011 (1074)
Q Consensus 936 gsI~IwDl~tg~~~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S~dDgtI~IWDl~t----~~~i~~l~gH~~~VtsL 1011 (1074)
..+.+|+...+..... ....-..|...+++.++||++.+++++. .||.|.+|.--. ....+.+.-|...|+++
T Consensus 181 ~~~~~~~v~~~~~~~~--~~~~~~~Htf~~t~~~~spn~~~~Aa~d-~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L 257 (792)
T KOG1963|consen 181 CKIHIYFVPKHTKHTS--SRDITVHHTFNITCVALSPNERYLAAGD-SDGRILVWRDFGSSDDSETCTLLHWHHDEVNSL 257 (792)
T ss_pred eeEEEEEecccceeec--cchhhhhhcccceeEEeccccceEEEec-cCCcEEEEeccccccccccceEEEeccccccee
Confidence 8899999988552221 1111234566689999999999999887 668899998432 23456677799999999
Q ss_pred EEecCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCeEEEEE--cCCEEEEEECCCcEEEEe
Q 001455 1012 AVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAGSKITSLLT--ANDIVLCGTETGLIKGWI 1072 (1074)
Q Consensus 1012 afSPDG~~LaSGS~DGtIrIWDl~tg~~l~tL~~hs~VtsLa~--dg~~LaSGs~DG~IrIWd 1072 (1074)
+|++||.+|.|||..|.+.+|.+.++++-.--+.+++|..+.+ +++..+....|+.|.+-.
T Consensus 258 ~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~ 320 (792)
T KOG1963|consen 258 SFSSDGAYLLSGGREGVLVLWQLETGKKQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIK 320 (792)
T ss_pred EEecCCceEeecccceEEEEEeecCCCcccccccCCeeEEEEEcCCCCeEEEEecCceEEEEe
Confidence 9999999999999999999999999885443344567888665 577888888899988754
No 200
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.22 E-value=3.7e-09 Score=115.26 Aligned_cols=270 Identities=17% Similarity=0.206 Sum_probs=185.9
Q ss_pred CcEEEEEEe-CC--EEEEEECCCcEEEEECCCCCeeEEEEeccCCCCEEEEEEcCCCCE-EEEEeCCCeEEEEEccCCce
Q 001455 795 GAVTALIYY-KG--LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGES-LLSGSADKTIGVWQMVQRKL 870 (1074)
Q Consensus 795 ~~VtsLafS-~~--~LaSGs~DGtVrIWDl~t~~~~~i~tl~gH~~~VtsLafSpdg~~-LaSGS~DGtIrIWDl~tg~~ 870 (1074)
+.|.-|.|. +. .+.....|+.|.+|++...+. ...+.....++.+++|||||+. |.+...|-.|.||.+.+.+.
T Consensus 49 dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew--~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~ 126 (447)
T KOG4497|consen 49 DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEW--YCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKG 126 (447)
T ss_pred HHhhheeeeccceeeeeeeeccceEEEEEeeccee--EEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEecccee
Confidence 466777888 44 477788999999999998765 5667778889999999999976 56777899999999998876
Q ss_pred EEEEEeccCCCeEEEccCCCeEEEEe------------------------------------cCCeEEEEeCCC--ceee
Q 001455 871 ELIEVIATKEPIRKLDTYGKTIFAST------------------------------------QGHRMKVIDSSR--TLKD 912 (1074)
Q Consensus 871 ~~~~~~~h~~~V~s~s~dg~~L~sgS------------------------------------~DgtI~VWDl~~--~l~~ 912 (1074)
.......+.....+|.++|++.+..+ .++.+.|||.-- .+..
T Consensus 127 ~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~a 206 (447)
T KOG4497|consen 127 YLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYA 206 (447)
T ss_pred EEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeee
Confidence 66555666667778888888766552 223456666432 2223
Q ss_pred eecCCCeEEEEEe-CCEEE-EEECCCcEEEEEccCCce-------------------ee------------ecc------
Q 001455 913 IYRSKGIKSMSVV-QGKIY-IGCMDSSIQELAVSNNVE-------------------RE------------IKA------ 953 (1074)
Q Consensus 913 l~~~~~V~sLa~s-dgkLl-aGs~DgsI~IwDl~tg~~-------------------~~------------i~~------ 953 (1074)
...+-++..++|+ .++++ .|+.|+.+++.+--+-+. +. .+.
T Consensus 207 Ye~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a 286 (447)
T KOG4497|consen 207 YERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEA 286 (447)
T ss_pred eeeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCcccc
Confidence 3335678899997 57755 599999998755311000 00 000
Q ss_pred -----------------------ccccccCCCCCeEEEEEcCCceEEEEEec-CCCeEEEEECCCCCeEEEccCCCCCeE
Q 001455 954 -----------------------PFKSWRLQSKPINSLVVYKDWLYSASSSV-EGSNIKEWRRHRKPQISIAPEKGTTIQ 1009 (1074)
Q Consensus 954 -----------------------~~r~~~~h~~~I~sL~~spd~i~las~S~-dDgtI~IWDl~t~~~i~~l~gH~~~Vt 1009 (1074)
|...+......+.-++|++|..|+++-.. --+.+-+||++..+....+ ....+|.
T Consensus 287 ~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avL-iQk~pir 365 (447)
T KOG4497|consen 287 HIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVL-IQKHPIR 365 (447)
T ss_pred CccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhh-hhcccee
Confidence 00000111234566888999999887651 1147899999887754443 3456799
Q ss_pred EEEEecCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCeEEEEEc--CCEEEEEECCCc
Q 001455 1010 AMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAGSKITSLLTA--NDIVLCGTETGL 1067 (1074)
Q Consensus 1010 sLafSPDG~~LaSGS~DGtIrIWDl~tg~~l~tL~~hs~VtsLa~d--g~~LaSGs~DG~ 1067 (1074)
...|+|....|+.+.....+++|.......+..-..+-.|..+.|. |..++-.+.|..
T Consensus 366 af~WdP~~prL~vctg~srLY~W~psg~~~V~vP~~GF~i~~l~W~~~g~~i~l~~kDaf 425 (447)
T KOG4497|consen 366 AFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGVPKKGFNIQKLQWLQPGEFIVLCGKDAF 425 (447)
T ss_pred EEEeCCCCceEEEEcCCceEEEEcCCCceEEecCCCCceeeeEEecCCCcEEEEEcCCce
Confidence 9999998888877777778999987765555554444458888886 778888888764
No 201
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.21 E-value=1.6e-10 Score=132.22 Aligned_cols=231 Identities=12% Similarity=0.124 Sum_probs=146.2
Q ss_pred CCCCCcEEEEEEe--CCEEEEEECCCcEEEEECCCCCeeEEEEe-ccCCCCEEEEEEcCC--CCEEEEEeCCCeEEEEEc
Q 001455 791 HKCSGAVTALIYY--KGLLCSGFSDGSIKMWDIKKQSAMLVWDV-KEHRKAVTSFSLFEP--GESLLSGSADKTIGVWQM 865 (1074)
Q Consensus 791 ~gH~~~VtsLafS--~~~LaSGs~DGtVrIWDl~t~~~~~i~tl-~gH~~~VtsLafSpd--g~~LaSGS~DGtIrIWDl 865 (1074)
.||+|-|+|+.|+ |.+|++|+.|-.+.|||.-..+. ++.+ .||...|.++.|-|. ...++||..|+.|+++|+
T Consensus 47 ~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~Kl--lhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl 124 (758)
T KOG1310|consen 47 TGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKL--LHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDL 124 (758)
T ss_pred ccccceecceeecCCCCEEeecCCcceEEeecchhcce--eeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEec
Confidence 4999999999999 66899999999999999986643 4443 599999999999984 445899999999999999
Q ss_pred cCCc---------eEEEEEeccCCCeEEE--ccCC-CeEEEEecCCeEEEEeCCCceeeee---------c----CCCeE
Q 001455 866 VQRK---------LELIEVIATKEPIRKL--DTYG-KTIFASTQGHRMKVIDSSRTLKDIY---------R----SKGIK 920 (1074)
Q Consensus 866 ~tg~---------~~~~~~~~h~~~V~s~--s~dg-~~L~sgS~DgtI~VWDl~~~l~~l~---------~----~~~V~ 920 (1074)
...+ ........|...|..+ .+++ +.+++++.||+++-||++.....-. . --...
T Consensus 125 ~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk 204 (758)
T KOG1310|consen 125 DSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELK 204 (758)
T ss_pred ccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheee
Confidence 7521 1112223455555544 3555 6899999999999999984211100 0 11356
Q ss_pred EEEEe--CCE-EEEEECCCcEEEEEccCCceeeeccccccccCCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCe
Q 001455 921 SMSVV--QGK-IYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQ 997 (1074)
Q Consensus 921 sLa~s--dgk-LlaGs~DgsI~IwDl~tg~~~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S~dDgtI~IWDl~t~~~ 997 (1074)
|+.++ +.. ++.|+.|-..++||.+..... +.. .... ...| ..+++.++.|....-+.
T Consensus 205 ~ltisp~rp~~laVGgsdpfarLYD~Rr~lks--------~~s--~~~~--~~~p--------p~~~~cv~yf~p~hlkn 264 (758)
T KOG1310|consen 205 CLTISPSRPYYLAVGGSDPFARLYDRRRVLKS--------FRS--DGTM--NTCP--------PKDCRCVRYFSPGHLKN 264 (758)
T ss_pred eeeecCCCCceEEecCCCchhhhhhhhhhccC--------CCC--Cccc--cCCC--------CcccchhheecCccccC
Confidence 77775 334 666999999999996541110 000 0000 0000 00112222222111100
Q ss_pred EEE-ccCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCcEEEEE
Q 001455 998 ISI-APEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRI 1043 (1074)
Q Consensus 998 i~~-l~gH~~~VtsLafSPDG~~LaSGS~DGtIrIWDl~tg~~l~tL 1043 (1074)
.+. ...-...++-+.|+|+|.-|+..-....|+++|+..++....+
T Consensus 265 ~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y 311 (758)
T KOG1310|consen 265 SQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTPY 311 (758)
T ss_pred cccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCceee
Confidence 000 0001113567889999987776666678999999887765444
No 202
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.20 E-value=5.1e-10 Score=124.59 Aligned_cols=255 Identities=12% Similarity=0.109 Sum_probs=182.2
Q ss_pred CCCcEEEEEEe-CC---EEEEEECCCcEEEEECCCCCeeEE----EEeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 001455 793 CSGAVTALIYY-KG---LLCSGFSDGSIKMWDIKKQSAMLV----WDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQ 864 (1074)
Q Consensus 793 H~~~VtsLafS-~~---~LaSGs~DGtVrIWDl~t~~~~~i----~tl~gH~~~VtsLafSpdg~~LaSGS~DGtIrIWD 864 (1074)
-...|++++|. ++ .+...+.|..+..+.+........ .......++|..++. -...|++|-.+|.+.+|.
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~--~dg~Litc~~sG~l~~~~ 131 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKL--ADGTLITCVSSGNLQVRH 131 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhh--cCCEEEEEecCCcEEEEe
Confidence 35678888888 32 355555777777777765433211 133345566776665 234588889999999999
Q ss_pred ccCCce--EEEEEeccCCCeEEE---ccCCCeEEEEecC--CeEEEEeCCCceeeeecC------------CCeEEEEEe
Q 001455 865 MVQRKL--ELIEVIATKEPIRKL---DTYGKTIFASTQG--HRMKVIDSSRTLKDIYRS------------KGIKSMSVV 925 (1074)
Q Consensus 865 l~tg~~--~~~~~~~h~~~V~s~---s~dg~~L~sgS~D--gtI~VWDl~~~l~~l~~~------------~~V~sLa~s 925 (1074)
...+.. ..........++..+ ..+...+++|+.. ..+.+||+....+.+... -.++++.|-
T Consensus 132 ~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl 211 (412)
T KOG3881|consen 132 DKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFL 211 (412)
T ss_pred ccCCccccccceeeecCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceec
Confidence 885542 111112222333333 3445577779988 789999999775544431 124566663
Q ss_pred ----CCEEEEEECCCcEEEEEccCCceeeeccccccccCCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEE-
Q 001455 926 ----QGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISI- 1000 (1074)
Q Consensus 926 ----dgkLlaGs~DgsI~IwDl~tg~~~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S~dDgtI~IWDl~t~~~i~~- 1000 (1074)
..++++++.-+.+++||.+.++. |+..+.....+++++...|++.++.++. .-+.+..||.+++.....
T Consensus 212 ~g~~~~~fat~T~~hqvR~YDt~~qRR-----PV~~fd~~E~~is~~~l~p~gn~Iy~gn-~~g~l~~FD~r~~kl~g~~ 285 (412)
T KOG3881|consen 212 EGSPNYKFATITRYHQVRLYDTRHQRR-----PVAQFDFLENPISSTGLTPSGNFIYTGN-TKGQLAKFDLRGGKLLGCG 285 (412)
T ss_pred CCCCCceEEEEecceeEEEecCcccCc-----ceeEeccccCcceeeeecCCCcEEEEec-ccchhheecccCceeeccc
Confidence 33588899999999999997543 3445566688999999999999988776 557899999999887665
Q ss_pred ccCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCeEEEEEc
Q 001455 1001 APEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAGSKITSLLTA 1055 (1074)
Q Consensus 1001 l~gH~~~VtsLafSPDG~~LaSGS~DGtIrIWDl~tg~~l~tL~~hs~VtsLa~d 1055 (1074)
+.+-.+.|+++..+|.+++++++|-|..|||+|.++.+++......+.++++-+.
T Consensus 286 ~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYvKs~lt~il~~ 340 (412)
T KOG3881|consen 286 LKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVKSRLTFILLR 340 (412)
T ss_pred cCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhhhccccEEEec
Confidence 8888999999999999999999999999999999998888777766677776553
No 203
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.20 E-value=4e-10 Score=128.73 Aligned_cols=202 Identities=17% Similarity=0.158 Sum_probs=144.1
Q ss_pred CEEEEEECCCcEEEEECCCCCeeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEccCCceEEEEEeccCCCeEE
Q 001455 805 GLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATKEPIRK 884 (1074)
Q Consensus 805 ~~LaSGs~DGtVrIWDl~t~~~~~i~tl~gH~~~VtsLafSpdg~~LaSGS~DGtIrIWDl~tg~~~~~~~~~h~~~V~s 884 (1074)
+.++.+++||.+.|-+-... .-..+..|.++|.|-.|+|+|.-|+|+|.||.|++|.- +|- ..........+|.|
T Consensus 76 d~~~i~s~DGkf~il~k~~r---VE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSr-sGM-LRStl~Q~~~~v~c 150 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILNKSAR---VERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSR-SGM-LRSTVVQNEESIRC 150 (737)
T ss_pred ceEEEEcCCceEEEecccch---hhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEec-cch-HHHHHhhcCceeEE
Confidence 36889999999999876543 23567899999999999999999999999999999984 443 22334456677877
Q ss_pred --EccCCCeEEEEecCC-eEEEEeCCCceeeeecCCC-eEEEEEe--CCEEEEEECCCcEEEEEccCCceeeeccccccc
Q 001455 885 --LDTYGKTIFASTQGH-RMKVIDSSRTLKDIYRSKG-IKSMSVV--QGKIYIGCMDSSIQELAVSNNVEREIKAPFKSW 958 (1074)
Q Consensus 885 --~s~dg~~L~sgS~Dg-tI~VWDl~~~l~~l~~~~~-V~sLa~s--dgkLlaGs~DgsI~IwDl~tg~~~~i~~~~r~~ 958 (1074)
+.|+++.++.+..+. .|+-...+..+.....+++ |.++.|+ ++-+++|+.|-..++||......- .-
T Consensus 151 ~~W~p~S~~vl~c~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~Lf-------~S 223 (737)
T KOG1524|consen 151 ARWAPNSNSIVFCQGGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGANLF-------TS 223 (737)
T ss_pred EEECCCCCceEEecCCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCcccc-------cC
Confidence 566666655544332 3333333334444444544 8899996 555788999999999998763221 11
Q ss_pred cCCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEccCCCCCeEEEEEecCCCEEEEEECCCcEEEE
Q 001455 959 RLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIW 1032 (1074)
Q Consensus 959 ~~h~~~I~sL~~spd~i~las~S~dDgtI~IWDl~t~~~i~~l~gH~~~VtsLafSPDG~~LaSGS~DGtIrIW 1032 (1074)
..|..+|++++|.|+..|++ ++ -++.+ .-....+.|..++||+||..+++|...|.+.+=
T Consensus 224 ~~~ey~ITSva~npd~~~~v-~S--~nt~R-----------~~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A 283 (737)
T KOG1524|consen 224 AAEEYAITSVAFNPEKDYLL-WS--YNTAR-----------FSSPRVGSIFNLSWSADGTQATCGTSTGQLIVA 283 (737)
T ss_pred Chhccceeeeeeccccceee-ee--eeeee-----------ecCCCccceEEEEEcCCCceeeccccCceEEEe
Confidence 46788999999999965554 33 23444 223345678999999999999999999987653
No 204
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.20 E-value=2.3e-09 Score=116.98 Aligned_cols=232 Identities=11% Similarity=0.139 Sum_probs=157.7
Q ss_pred cEEEEEEe-CCEEEEEECCCcEEEEECCCCCeeEEEEeccCCCCEEEEEEcCCCCEEE-EEeCC------CeEEEEEccC
Q 001455 796 AVTALIYY-KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLL-SGSAD------KTIGVWQMVQ 867 (1074)
Q Consensus 796 ~VtsLafS-~~~LaSGs~DGtVrIWDl~t~~~~~i~tl~gH~~~VtsLafSpdg~~La-SGS~D------GtIrIWDl~t 867 (1074)
...+++|+ +.-.++.+.|.-.+||+.+--+......+....-.+.-+-| -.++|+ .||.+ ..|.|||=..
T Consensus 7 ~~lsvs~NQD~ScFava~~~Gfriyn~~P~ke~~~r~~~~~G~~~veMLf--R~N~laLVGGg~~pky~pNkviIWDD~k 84 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTGFRIYNCDPFKESASRQFIDGGFKIVEMLF--RSNYLALVGGGSRPKYPPNKVIIWDDLK 84 (346)
T ss_pred ceeEEEEccCCceEEEEecCceEEEecCchhhhhhhccccCchhhhhHhh--hhceEEEecCCCCCCCCCceEEEEeccc
Confidence 45568888 55444555555589999875322111111111122222333 233432 34433 4699999433
Q ss_pred CceEEEEEeccCCCeEEEccCCCeEEEEecCCeEEEEeCCCceee------eecCCCeEEEEEe-CCEEEE--EECCCcE
Q 001455 868 RKLELIEVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSSRTLKD------IYRSKGIKSMSVV-QGKIYI--GCMDSSI 938 (1074)
Q Consensus 868 g~~~~~~~~~h~~~V~s~s~dg~~L~sgS~DgtI~VWDl~~~l~~------l~~~~~V~sLa~s-dgkLla--Gs~DgsI 938 (1074)
. .+........+|.++.-..+.++++-. +.|+||.....++. ....++..++.-. +..+++ |-.-|.|
T Consensus 85 ~--~~i~el~f~~~I~~V~l~r~riVvvl~-~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~Gqv 161 (346)
T KOG2111|consen 85 E--RCIIELSFNSEIKAVKLRRDRIVVVLE-NKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQV 161 (346)
T ss_pred C--cEEEEEEeccceeeEEEcCCeEEEEec-CeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceE
Confidence 3 344555677888888888888877754 67999998733322 2224455555544 334544 7778999
Q ss_pred EEEEccCCceeeeccccccccCCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEccC--CCCCeEEEEEecC
Q 001455 939 QELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPE--KGTTIQAMAVVED 1016 (1074)
Q Consensus 939 ~IwDl~tg~~~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S~dDgtI~IWDl~t~~~i~~l~g--H~~~VtsLafSPD 1016 (1074)
++-|+...+.. +......|...|.+++.+.+|..+++++..+..|+|||..+|..++.+.- ....|.+++||||
T Consensus 162 Qi~dL~~~~~~----~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~ 237 (346)
T KOG2111|consen 162 QIVDLASTKPN----APSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPN 237 (346)
T ss_pred EEEEhhhcCcC----CceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCC
Confidence 99999875442 12345789999999999999999999997777899999999998887753 2347999999999
Q ss_pred CCEEEEEECCCcEEEEECCC
Q 001455 1017 FIYLNYNSSASSLQIWLRGT 1036 (1074)
Q Consensus 1017 G~~LaSGS~DGtIrIWDl~t 1036 (1074)
+.+|+.+|+.|+++||.++.
T Consensus 238 ~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 238 SSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred ccEEEEEcCCCeEEEEEeec
Confidence 99999999999999998655
No 205
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.19 E-value=7.3e-10 Score=122.42 Aligned_cols=240 Identities=12% Similarity=0.041 Sum_probs=166.2
Q ss_pred EEeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEccC------CceEEEEEeccCCCeEEE--ccCCCeEEEEecCCeE
Q 001455 830 WDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQ------RKLELIEVIATKEPIRKL--DTYGKTIFASTQGHRM 901 (1074)
Q Consensus 830 ~tl~gH~~~VtsLafSpdg~~LaSGS~DGtIrIWDl~t------g~~~~~~~~~h~~~V~s~--s~dg~~L~sgS~DgtI 901 (1074)
..+.+|.+.|+++.|+.++++|++||.|..+++|++.. .+.+...-..|...|.++ ...+..+++|..+++|
T Consensus 50 KD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~V 129 (609)
T KOG4227|consen 50 KDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTV 129 (609)
T ss_pred hhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCccee
Confidence 44569999999999999999999999999999999853 233344444666778875 4566789999999999
Q ss_pred EEEeCCC--ceeeeecC---CCeEEEEEe--CCEEEEEECCCcEEEEEccCCce-eeeccccccccCCCCCeEEEEEcCC
Q 001455 902 KVIDSSR--TLKDIYRS---KGIKSMSVV--QGKIYIGCMDSSIQELAVSNNVE-REIKAPFKSWRLQSKPINSLVVYKD 973 (1074)
Q Consensus 902 ~VWDl~~--~l~~l~~~---~~V~sLa~s--dgkLlaGs~DgsI~IwDl~tg~~-~~i~~~~r~~~~h~~~I~sL~~spd 973 (1074)
...|+.. .+....+. +.|..+..+ ++.+++.+.++.|.+||.+.... .... .....+...+++.|+|.
T Consensus 130 I~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~----~~AN~~~~F~t~~F~P~ 205 (609)
T KOG4227|consen 130 IKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLV----LPANSGKNFYTAEFHPE 205 (609)
T ss_pred EeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCcee----eecCCCccceeeeecCC
Confidence 9999983 33333333 358888774 77888899999999999987441 1111 11223566788899987
Q ss_pred ceEEEEEecCCCeEEEEECCCCCe-EEEc---cC---CCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCcE-EEEEeC
Q 001455 974 WLYSASSSVEGSNIKEWRRHRKPQ-ISIA---PE---KGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQK-VGRISA 1045 (1074)
Q Consensus 974 ~i~las~S~dDgtI~IWDl~t~~~-i~~l---~g---H~~~VtsLafSPDG~~LaSGS~DGtIrIWDl~tg~~-l~tL~~ 1045 (1074)
...++....+.+-+-+||.+.... +... .+ ....-.++.|+|+|..+.+--....-.+||+-+..+ +..+..
T Consensus 206 ~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~ 285 (609)
T KOG4227|consen 206 TPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDH 285 (609)
T ss_pred CceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccC
Confidence 665554444556699999764331 1111 11 112235678999999888766555566778766444 444431
Q ss_pred C--C-----CeEEEEEcCC-EEEEEECCCcEEEEec
Q 001455 1046 G--S-----KITSLLTAND-IVLCGTETGLIKGWIP 1073 (1074)
Q Consensus 1046 h--s-----~VtsLa~dg~-~LaSGs~DG~IrIWdi 1073 (1074)
. + .+.++.|-++ .+++|+.+=.|++|.+
T Consensus 286 N~~GY~N~~T~KS~~F~~D~~v~tGSD~~~i~~Wkl 321 (609)
T KOG4227|consen 286 NPNGYCNIKTIKSMTFIDDYTVATGSDHWGIHIWKL 321 (609)
T ss_pred CCCcceeeeeeeeeeeecceeeeccCcccceEEEec
Confidence 1 1 1556777654 7889999999999985
No 206
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.19 E-value=6.5e-09 Score=123.40 Aligned_cols=230 Identities=9% Similarity=0.081 Sum_probs=148.8
Q ss_pred CcEEEEECCCCCeeEEEEeccCCCCEEEEEEcCCCCEEEEEe---CCCeEEEEEccCCceEEEEEeccCCCeEEEccCCC
Q 001455 814 GSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGS---ADKTIGVWQMVQRKLELIEVIATKEPIRKLDTYGK 890 (1074)
Q Consensus 814 GtVrIWDl~t~~~~~i~tl~gH~~~VtsLafSpdg~~LaSGS---~DGtIrIWDl~tg~~~~~~~~~h~~~V~s~s~dg~ 890 (1074)
..|.+||.+.... ..+..+...+.+.+|+|||+.|+..+ .+..|.+||+.+|+............-..|+|+|+
T Consensus 179 ~~l~~~d~dg~~~---~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~ 255 (429)
T PRK03629 179 YELRVSDYDGYNQ---FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGS 255 (429)
T ss_pred eeEEEEcCCCCCC---EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCC
Confidence 3789999887653 33445677899999999999987654 34579999998886543222212122346899999
Q ss_pred eEEEE-ecCC--eEEEEeCCC-ceeeeec-CCCeEEEEEe-CCE-EEEEEC-CCc--EEEEEccCCceeeeccccccccC
Q 001455 891 TIFAS-TQGH--RMKVIDSSR-TLKDIYR-SKGIKSMSVV-QGK-IYIGCM-DSS--IQELAVSNNVEREIKAPFKSWRL 960 (1074)
Q Consensus 891 ~L~sg-S~Dg--tI~VWDl~~-~l~~l~~-~~~V~sLa~s-dgk-LlaGs~-Dgs--I~IwDl~tg~~~~i~~~~r~~~~ 960 (1074)
.++.. +.++ .|++||+.. ....+.. ...+....|+ +|+ ++.++. ++. |+.+|+.++....+ ..
T Consensus 256 ~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~l-------t~ 328 (429)
T PRK03629 256 KLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRI-------TW 328 (429)
T ss_pred EEEEEEcCCCCcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEe-------ec
Confidence 88765 3344 588999873 3333333 3346677886 776 555544 344 55556666544322 12
Q ss_pred CCCCeEEEEEcCCceEEEEEecCC--CeEEEEECCCCCeEEEccCCCCCeEEEEEecCCCEEEEEECCCc---EEEEECC
Q 001455 961 QSKPINSLVVYKDWLYSASSSVEG--SNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASS---LQIWLRG 1035 (1074)
Q Consensus 961 h~~~I~sL~~spd~i~las~S~dD--gtI~IWDl~t~~~i~~l~gH~~~VtsLafSPDG~~LaSGS~DGt---IrIWDl~ 1035 (1074)
.........++|++.+++..+..+ ..|.+||+.++........ .......|+|||++|+.++.++. +.+|++
T Consensus 329 ~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~~--~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~- 405 (429)
T PRK03629 329 EGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLTDT--FLDETPSIAPNGTMVIYSSSQGMGSVLNLVST- 405 (429)
T ss_pred CCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEEeCCC--CCCCCceECCCCCEEEEEEcCCCceEEEEEEC-
Confidence 233455688999998876655333 3688899988875433322 22346789999999999997765 566676
Q ss_pred CCcEEEEEeCC-CCeEEEEEcC
Q 001455 1036 TQQKVGRISAG-SKITSLLTAN 1056 (1074)
Q Consensus 1036 tg~~l~tL~~h-s~VtsLa~dg 1056 (1074)
+|.....+.+| +.+...+|++
T Consensus 406 ~G~~~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 406 DGRFKARLPATDGQVKFPAWSP 427 (429)
T ss_pred CCCCeEECccCCCCcCCcccCC
Confidence 55566667665 4466666664
No 207
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.18 E-value=1.1e-09 Score=119.24 Aligned_cols=205 Identities=12% Similarity=0.088 Sum_probs=141.3
Q ss_pred CCcEEEEEEe-C-CEEEEEECCCcEEEEECCCCC-eeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcc-CCc
Q 001455 794 SGAVTALIYY-K-GLLCSGFSDGSIKMWDIKKQS-AMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMV-QRK 869 (1074)
Q Consensus 794 ~~~VtsLafS-~-~~LaSGs~DGtVrIWDl~t~~-~~~i~tl~gH~~~VtsLafSpdg~~LaSGS~DGtIrIWDl~-tg~ 869 (1074)
-.+|+|.+|+ + ..+|.+-....|.||...+.. .+..++++.|...|++++|+|..+.|++|+.|..-++|... .++
T Consensus 10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~ 89 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGT 89 (361)
T ss_pred cCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCe
Confidence 4799999999 4 369999999999999998877 67889999999999999999999999999999999999984 443
Q ss_pred eEEE-EEeccCCCeEE--EccCCCeEEEEecCCeEEEEeCCCceeeeecCCCeEEEEEeCCEEEEEECCCcEEEEEccCC
Q 001455 870 LELI-EVIATKEPIRK--LDTYGKTIFASTQGHRMKVIDSSRTLKDIYRSKGIKSMSVVQGKIYIGCMDSSIQELAVSNN 946 (1074)
Q Consensus 870 ~~~~-~~~~h~~~V~s--~s~dg~~L~sgS~DgtI~VWDl~~~l~~l~~~~~V~sLa~sdgkLlaGs~DgsI~IwDl~tg 946 (1074)
...+ ....+....++ ++|.++.+++|+....|.||-.++...-. +.
T Consensus 90 WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWW-----------------------------Vs-- 138 (361)
T KOG1523|consen 90 WKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWW-----------------------------VS-- 138 (361)
T ss_pred eccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEeccccee-----------------------------hh--
Confidence 3222 12233444443 45666677777666666655544211110 00
Q ss_pred ceeeeccccccccCCCCCeEEEEEcCCceEEEEEecCCCeEEEEEC-----C-------------CCCeEEEccCCCCCe
Q 001455 947 VEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRR-----H-------------RKPQISIAPEKGTTI 1008 (1074)
Q Consensus 947 ~~~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S~dDgtI~IWDl-----~-------------t~~~i~~l~gH~~~V 1008 (1074)
+.++ ......|.++.+||+++.+++++ .|+..++|.. + -|.++..+....++|
T Consensus 139 --Khik------kPirStv~sldWhpnnVLlaaGs-~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwv 209 (361)
T KOG1523|consen 139 --KHIK------KPIRSTVTSLDWHPNNVLLAAGS-TDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWV 209 (361)
T ss_pred --hhhC------CccccceeeeeccCCcceecccc-cCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCce
Confidence 0011 11234556666666666665554 4455555542 1 123344444567799
Q ss_pred EEEEEecCCCEEEEEECCCcEEEEECCCCc
Q 001455 1009 QAMAVVEDFIYLNYNSSASSLQIWLRGTQQ 1038 (1074)
Q Consensus 1009 tsLafSPDG~~LaSGS~DGtIrIWDl~tg~ 1038 (1074)
..+.|+|+|..|+-.+.|+++.+=|.....
T Consensus 210 h~v~fs~sG~~lawv~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 210 HGVLFSPSGNRLAWVGHDSTVSFVDAAGPS 239 (361)
T ss_pred eeeEeCCCCCEeeEecCCCceEEeecCCCc
Confidence 999999999999999999999999866654
No 208
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.17 E-value=1.1e-09 Score=125.15 Aligned_cols=253 Identities=17% Similarity=0.177 Sum_probs=169.5
Q ss_pred CCCCcEEEEEEe-CCEEEEEECCCcEEEEECCCCCeeEEEEeccCCCCEEE-EEEc-------CCCCEEEEEeCCCeEEE
Q 001455 792 KCSGAVTALIYY-KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTS-FSLF-------EPGESLLSGSADKTIGV 862 (1074)
Q Consensus 792 gH~~~VtsLafS-~~~LaSGs~DGtVrIWDl~t~~~~~i~tl~gH~~~Vts-LafS-------pdg~~LaSGS~DGtIrI 862 (1074)
-|...|.|+.|+ ..-+...+.|..+.+|.--+.....+..+. .+-|.. +..- .....++.++.||.+.+
T Consensus 12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~~~~~p--~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~i 89 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVEVAKLP--DDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVI 89 (737)
T ss_pred ccceeEEeecccccceEEEeccCceEEEeecccchhhhhhhCC--cccCCccccccccccCCCCCcceEEEEcCCceEEE
Confidence 467778899999 445666666666666654332211111111 111111 1111 12234888999999988
Q ss_pred EEccCCceEEEEEeccCCCeEE--EccCCCeEEEEecCCeEEEEeCCCceeeee--cCCCeEEEEEe-CCEEEEEECCCc
Q 001455 863 WQMVQRKLELIEVIATKEPIRK--LDTYGKTIFASTQGHRMKVIDSSRTLKDIY--RSKGIKSMSVV-QGKIYIGCMDSS 937 (1074)
Q Consensus 863 WDl~tg~~~~~~~~~h~~~V~s--~s~dg~~L~sgS~DgtI~VWDl~~~l~~l~--~~~~V~sLa~s-dgkLlaGs~Dgs 937 (1074)
-+- .++. ......|...+.+ ++++|.-+++++.||.|++|.-.+.++... ....|.|++|. +..-+.-|..+.
T Consensus 90 l~k-~~rV-E~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g~h 167 (737)
T KOG1524|consen 90 LNK-SARV-ERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRCARWAPNSNSIVFCQGGH 167 (737)
T ss_pred ecc-cchh-hhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchHHHHHhhcCceeEEEEECCCCCceEEecCCe
Confidence 764 3443 2345567777765 899999999999999999999887665433 35679999995 433222234455
Q ss_pred EEEEEccCCceeeeccccccccCCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEccCCCCCeEEEEEecCC
Q 001455 938 IQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDF 1017 (1074)
Q Consensus 938 I~IwDl~tg~~~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S~dDgtI~IWDl~t~~~i~~l~gH~~~VtsLafSPDG 1017 (1074)
+.+-.+..+.. .-.|..|.+-|.++.+++....+++++ +|-..++||.... .+.....|..+|++++|.||
T Consensus 168 ~~IKpL~~n~k------~i~WkAHDGiiL~~~W~~~s~lI~sgG-ED~kfKvWD~~G~-~Lf~S~~~ey~ITSva~npd- 238 (737)
T KOG1524|consen 168 ISIKPLAANSK------IIRWRAHDGLVLSLSWSTQSNIIASGG-EDFRFKIWDAQGA-NLFTSAAEEYAITSVAFNPE- 238 (737)
T ss_pred EEEeecccccc------eeEEeccCcEEEEeecCccccceeecC-CceeEEeecccCc-ccccCChhccceeeeeeccc-
Confidence 66655544221 235789999999999999999888887 8899999997644 45566689999999999999
Q ss_pred CEEEEEECCCcEEEEECCCCcEEEEEeCC--CCeEEEEEc--CCEEEEEECCCcEEE
Q 001455 1018 IYLNYNSSASSLQIWLRGTQQKVGRISAG--SKITSLLTA--NDIVLCGTETGLIKG 1070 (1074)
Q Consensus 1018 ~~LaSGS~DGtIrIWDl~tg~~l~tL~~h--s~VtsLa~d--g~~LaSGs~DG~IrI 1070 (1074)
..++.||. ++.+ +... +.|..++|+ |..++.|+..|.+.+
T Consensus 239 ~~~~v~S~-nt~R------------~~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 239 KDYLLWSY-NTAR------------FSSPRVGSIFNLSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred cceeeeee-eeee------------ecCCCccceEEEEEcCCCceeeccccCceEEE
Confidence 55666653 3444 3322 457777775 779999999998754
No 209
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.15 E-value=4.3e-11 Score=142.06 Aligned_cols=234 Identities=14% Similarity=0.099 Sum_probs=165.4
Q ss_pred CCCCCcEEEEEEe-CC-EEEEEECCCcEEEEECCCCCeeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEccCC
Q 001455 791 HKCSGAVTALIYY-KG-LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQR 868 (1074)
Q Consensus 791 ~gH~~~VtsLafS-~~-~LaSGs~DGtVrIWDl~t~~~~~i~tl~gH~~~VtsLafSpdg~~LaSGS~DGtIrIWDl~tg 868 (1074)
.||.+.|+.++.+ ++ ++++++.|..|++|.+.++. ++..+.||+++|++++|+|-. +.+.||++++||.+-.
T Consensus 229 rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~--pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~ 302 (1113)
T KOG0644|consen 229 RGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGA--PVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLE 302 (1113)
T ss_pred CCCccccchhccchhhhhhhhcccCceEEEEecCCCc--hHHHHhccccceeeeccCccc----cCCCCCceEecccccc
Confidence 3999999999999 44 69999999999999999884 478889999999999999955 7889999999998721
Q ss_pred ceEEE---EEeccCCCeEE--EccCCCeEEEEecCCeEEEEeCCCceeeeecCCCeEEEEEe---CCEEEEEECCCcEEE
Q 001455 869 KLELI---EVIATKEPIRK--LDTYGKTIFASTQGHRMKVIDSSRTLKDIYRSKGIKSMSVV---QGKIYIGCMDSSIQE 940 (1074)
Q Consensus 869 ~~~~~---~~~~h~~~V~s--~s~dg~~L~sgS~DgtI~VWDl~~~l~~l~~~~~V~sLa~s---dgkLlaGs~DgsI~I 940 (1074)
..... .....+..+.+ +...+..+.+|+.|+.-..|.+...... ...+.-+..+ +...++.-.+..+.+
T Consensus 303 ~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~---~~~lif~t~ssd~~~~~~~ar~~~~~~v 379 (1113)
T KOG0644|consen 303 PRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWR---SNLLIFVTRSSDLSSIVVTARNDHRLCV 379 (1113)
T ss_pred ccccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhhhh---ccceEEEeccccccccceeeeeeeEeee
Confidence 11100 00111122222 4567778999999998888776521100 0000001111 233445666778899
Q ss_pred EEccCCceeeeccccccccCCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEccCCCCCeEEEEEecCCCEE
Q 001455 941 LAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYL 1020 (1074)
Q Consensus 941 wDl~tg~~~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S~dDgtI~IWDl~t~~~i~~l~gH~~~VtsLafSPDG~~L 1020 (1074)
|++.+|.... ...+|...+..+.+||-...++-...-||...|||+-.|..++.+......+..-+||+||..+
T Consensus 380 wnl~~g~l~H------~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~ 453 (1113)
T KOG0644|consen 380 WNLYTGQLLH------NLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSI 453 (1113)
T ss_pred eecccchhhh------hhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecccceeeccccCCCCceE
Confidence 9999976543 3467889999999998765554333468999999988777665443334456777999999999
Q ss_pred EEEECCCcEEEEECCCCcE
Q 001455 1021 NYNSSASSLQIWLRGTQQK 1039 (1074)
Q Consensus 1021 aSGS~DGtIrIWDl~tg~~ 1039 (1074)
+....-|.++|.....++.
T Consensus 454 ~lsd~hgql~i~g~gqs~s 472 (1113)
T KOG0644|consen 454 ALSDDHGQLYILGTGQSKS 472 (1113)
T ss_pred ecCCCCCceEEeccCCCcc
Confidence 9988889999987655544
No 210
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.15 E-value=3.9e-10 Score=128.15 Aligned_cols=241 Identities=15% Similarity=0.143 Sum_probs=174.7
Q ss_pred EEEeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEccCCceEEEEEeccCCCeEE--Ecc--CCCeEEEEecCCeEEEE
Q 001455 829 VWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATKEPIRK--LDT--YGKTIFASTQGHRMKVI 904 (1074)
Q Consensus 829 i~tl~gH~~~VtsLafSpdg~~LaSGS~DGtIrIWDl~tg~~~~~~~~~h~~~V~s--~s~--dg~~L~sgS~DgtI~VW 904 (1074)
...+.+|.+.|..+.|+..|..|+|||.|..|.+||...+........+|...|.. |-| +...+++.+.||.+++=
T Consensus 135 ~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s 214 (559)
T KOG1334|consen 135 QKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVS 214 (559)
T ss_pred hhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeee
Confidence 45678999999999999999999999999999999999988777777788777753 543 34578999999999987
Q ss_pred eCC--Cc---ee-eeecCCCeEEEEEe---CCEEEEEECCCcEEEEEccCCceeeeccccccccCCCC---CeEEEEEcC
Q 001455 905 DSS--RT---LK-DIYRSKGIKSMSVV---QGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSK---PINSLVVYK 972 (1074)
Q Consensus 905 Dl~--~~---l~-~l~~~~~V~sLa~s---dgkLlaGs~DgsI~IwDl~tg~~~~i~~~~r~~~~h~~---~I~sL~~sp 972 (1074)
.+. +. .+ .-.+.+.|.-++.. ...+++++.|+.+.-+|++.+........ -..+.. ..++++.+|
T Consensus 215 ~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~c---r~~~~~~~v~L~~Ia~~P 291 (559)
T KOG1334|consen 215 EILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVC---READEKERVGLYTIAVDP 291 (559)
T ss_pred eeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeee---eccCCccceeeeeEecCC
Confidence 765 11 12 22345668888874 33488999999999999988665332211 112222 567888888
Q ss_pred CceEEEEEecCCCeEEEEECCCCC------eEEEccC------CCCCeEEEEEecCCCEEEEEECCCcEEEEEC--CCC-
Q 001455 973 DWLYSASSSVEGSNIKEWRRHRKP------QISIAPE------KGTTIQAMAVVEDFIYLNYNSSASSLQIWLR--GTQ- 1037 (1074)
Q Consensus 973 d~i~las~S~dDgtI~IWDl~t~~------~i~~l~g------H~~~VtsLafSPDG~~LaSGS~DGtIrIWDl--~tg- 1037 (1074)
...+.++.++.|..+++||...-. .+..+.. ..-.|++++|+.++.-+.+.-.|-.|++++. ..|
T Consensus 292 ~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~ 371 (559)
T KOG1334|consen 292 RNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGS 371 (559)
T ss_pred CCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCC
Confidence 877666666678899999964321 1222222 2237999999988877777777889999963 334
Q ss_pred ---------cEEEE-EeCCC---CeEEEEEcC---CEEEEEECCCcEEEEe
Q 001455 1038 ---------QKVGR-ISAGS---KITSLLTAN---DIVLCGTETGLIKGWI 1072 (1074)
Q Consensus 1038 ---------~~l~t-L~~hs---~VtsLa~dg---~~LaSGs~DG~IrIWd 1072 (1074)
..+.. +++|. .|.++.|-| .++++|++-|.|.||+
T Consensus 372 ~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~ 422 (559)
T KOG1334|consen 372 EPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWD 422 (559)
T ss_pred CCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEe
Confidence 23444 77882 277777653 5999999999999997
No 211
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.11 E-value=4.4e-09 Score=124.84 Aligned_cols=209 Identities=11% Similarity=0.064 Sum_probs=137.2
Q ss_pred CCCCcEEEEEEe--CCEEEEEECC---CcEEEEECCCCCeeEEEEeccCCCCEEEEEEcCCCCEEEEEe-CCCeEEEE--
Q 001455 792 KCSGAVTALIYY--KGLLCSGFSD---GSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGS-ADKTIGVW-- 863 (1074)
Q Consensus 792 gH~~~VtsLafS--~~~LaSGs~D---GtVrIWDl~t~~~~~i~tl~gH~~~VtsLafSpdg~~LaSGS-~DGtIrIW-- 863 (1074)
.|.+.|.+..|+ +..++.++.+ ..|++||+.+++...+..+.+|. ..++|+|||+.|+.++ .+|.+.||
T Consensus 201 ~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~---~~~~wSPDG~~La~~~~~~g~~~Iy~~ 277 (429)
T PRK01742 201 RSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHN---GAPAFSPDGSRLAFASSKDGVLNIYVM 277 (429)
T ss_pred cCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCcc---CceeECCCCCEEEEEEecCCcEEEEEE
Confidence 567889999999 4467766644 47999999987655555555554 4689999999987654 68876655
Q ss_pred EccCCceEEEEEeccCCCe--EEEccCCCeEEEEe-cCCeEEEEeCC--CceeeeecCCCeEEEEEe-CCE-EEEEECCC
Q 001455 864 QMVQRKLELIEVIATKEPI--RKLDTYGKTIFAST-QGHRMKVIDSS--RTLKDIYRSKGIKSMSVV-QGK-IYIGCMDS 936 (1074)
Q Consensus 864 Dl~tg~~~~~~~~~h~~~V--~s~s~dg~~L~sgS-~DgtI~VWDl~--~~l~~l~~~~~V~sLa~s-dgk-LlaGs~Dg 936 (1074)
|+.++.... ...+...+ ..|+++|+.++.++ .++...+|+++ +.......... ....|+ +|+ ++.++.+
T Consensus 278 d~~~~~~~~--lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~~-~~~~~SpDG~~ia~~~~~- 353 (429)
T PRK01742 278 GANGGTPSQ--LTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGGRG-YSAQISADGKTLVMINGD- 353 (429)
T ss_pred ECCCCCeEe--eccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecCCC-CCccCCCCCCEEEEEcCC-
Confidence 666665432 22333333 46899999877665 56777888764 22222222222 345665 776 4445554
Q ss_pred cEEEEEccCCceeeeccccccccCCCCCeEEEEEcCCceEEEEEecCCCeEEEEEC--CCCCeEEEccCCCCCeEEEEEe
Q 001455 937 SIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRR--HRKPQISIAPEKGTTIQAMAVV 1014 (1074)
Q Consensus 937 sI~IwDl~tg~~~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S~dDgtI~IWDl--~t~~~i~~l~gH~~~VtsLafS 1014 (1074)
.+..||+.++........ .......++|++.+++..+ .++.+.+|++ .++...+.+.+|.+.+...+|+
T Consensus 354 ~i~~~Dl~~g~~~~lt~~--------~~~~~~~~sPdG~~i~~~s-~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~ws 424 (429)
T PRK01742 354 NVVKQDLTSGSTEVLSST--------FLDESPSISPNGIMIIYSS-TQGLGKVLQLVSADGRFKARLPGSDGQVKFPAWS 424 (429)
T ss_pred CEEEEECCCCCeEEecCC--------CCCCCceECCCCCEEEEEE-cCCCceEEEEEECCCCceEEccCCCCCCCCcccC
Confidence 466699988765432111 1224567999999888777 4566677764 3566778888888889999999
Q ss_pred cC
Q 001455 1015 ED 1016 (1074)
Q Consensus 1015 PD 1016 (1074)
|-
T Consensus 425 p~ 426 (429)
T PRK01742 425 PY 426 (429)
T ss_pred CC
Confidence 84
No 212
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.09 E-value=4.1e-09 Score=121.76 Aligned_cols=230 Identities=14% Similarity=0.128 Sum_probs=166.7
Q ss_pred cCCCCEEEEEEcCCCCE-EEEEeCCCeEEEEEccCCceEEEEEeccCCCeEE---EccCCCeEEEEecCCeEEEEeCCCc
Q 001455 834 EHRKAVTSFSLFEPGES-LLSGSADKTIGVWQMVQRKLELIEVIATKEPIRK---LDTYGKTIFASTQGHRMKVIDSSRT 909 (1074)
Q Consensus 834 gH~~~VtsLafSpdg~~-LaSGS~DGtIrIWDl~tg~~~~~~~~~h~~~V~s---~s~dg~~L~sgS~DgtI~VWDl~~~ 909 (1074)
+|...-+.|..+|||++ ++||..--.|++||+.+-.+. +-......+.. ++.+-..++....|.+|-+....+.
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLK--FERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~ 126 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLK--FERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGR 126 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceee--eeecccccceeEEEeccchhhheEeecCceeeehhhcCe
Confidence 67888899999999999 678888999999999764432 22222333443 3455556777777887776665544
Q ss_pred eeeeecCCCeEEEEEe--CCEEEEEECCCcEEEEEccCCceeeeccccccccCCCCCeEEEEEcCCceEEEEEecCCCeE
Q 001455 910 LKDIYRSKGIKSMSVV--QGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNI 987 (1074)
Q Consensus 910 l~~l~~~~~V~sLa~s--dgkLlaGs~DgsI~IwDl~tg~~~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S~dDgtI 987 (1074)
...+.-...-+++++. .-.+++++....|+-+++..|..... +......++++..++-...+++++ ++|.|
T Consensus 127 hy~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P------~~~~~~~lN~v~in~~hgLla~Gt-~~g~V 199 (703)
T KOG2321|consen 127 HYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNP------FETDSGELNVVSINEEHGLLACGT-EDGVV 199 (703)
T ss_pred eeeeecCcCCccccccCCCccEEEeecCcceEEEEccccccccc------cccccccceeeeecCccceEEecc-cCceE
Confidence 4444334444566664 55588888888999999998876432 344568899999998877777665 78999
Q ss_pred EEEECCCCCeEEEcc------CCCC-----CeEEEEEecCCCEEEEEECCCcEEEEECCCCcEEEEEeCC--CCeEEEEE
Q 001455 988 KEWRRHRKPQISIAP------EKGT-----TIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAG--SKITSLLT 1054 (1074)
Q Consensus 988 ~IWDl~t~~~i~~l~------gH~~-----~VtsLafSPDG~~LaSGS~DGtIrIWDl~tg~~l~tL~~h--s~VtsLa~ 1054 (1074)
..||.+....+..+. .|.+ .|+++.|+.||-.+++|..+|.|.|||+++.+++..-... -+|..+.|
T Consensus 200 EfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~ 279 (703)
T KOG2321|consen 200 EFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDW 279 (703)
T ss_pred EEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecc
Confidence 999988776554432 2333 4999999999999999999999999999999987665433 34888888
Q ss_pred c----CCEEEEEECCCcEEEEec
Q 001455 1055 A----NDIVLCGTETGLIKGWIP 1073 (1074)
Q Consensus 1055 d----g~~LaSGs~DG~IrIWdi 1073 (1074)
. ++.++|. +...++||+.
T Consensus 280 ~~~~~q~~v~S~-Dk~~~kiWd~ 301 (703)
T KOG2321|consen 280 QDTDQQNKVVSM-DKRILKIWDE 301 (703)
T ss_pred cccCCCceEEec-chHHhhhccc
Confidence 4 2355554 4667999985
No 213
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.08 E-value=1.6e-08 Score=120.28 Aligned_cols=230 Identities=13% Similarity=0.076 Sum_probs=146.3
Q ss_pred CcEEEEECCCCCeeEEEEeccCCCCEEEEEEcCCCCEEEEEeCC---CeEEEEEccCCceEEEEEeccCCCeEEEccCCC
Q 001455 814 GSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSAD---KTIGVWQMVQRKLELIEVIATKEPIRKLDTYGK 890 (1074)
Q Consensus 814 GtVrIWDl~t~~~~~i~tl~gH~~~VtsLafSpdg~~LaSGS~D---GtIrIWDl~tg~~~~~~~~~h~~~V~s~s~dg~ 890 (1074)
..|.+||..+... ..+..|...+.+.+|+|||+.|+.++.+ ..|.+||+.+++...............|+++|+
T Consensus 184 ~~l~i~D~~g~~~---~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~ 260 (433)
T PRK04922 184 YALQVADSDGYNP---QTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSPDGR 260 (433)
T ss_pred EEEEEECCCCCCc---eEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECCCCC
Confidence 4688999876543 4456677889999999999998877643 469999998887543222111112236899999
Q ss_pred eEEE-EecCC--eEEEEeCCC-ceeeeecCC-CeEEEEEe-CCE-EEEEE-CCCc--EEEEEccCCceeeeccccccccC
Q 001455 891 TIFA-STQGH--RMKVIDSSR-TLKDIYRSK-GIKSMSVV-QGK-IYIGC-MDSS--IQELAVSNNVEREIKAPFKSWRL 960 (1074)
Q Consensus 891 ~L~s-gS~Dg--tI~VWDl~~-~l~~l~~~~-~V~sLa~s-dgk-LlaGs-~Dgs--I~IwDl~tg~~~~i~~~~r~~~~ 960 (1074)
.++. .+.++ .|++||+.. ....+..+. ......|+ +|+ ++.++ .+|. |+++|+.+++...+. .
T Consensus 261 ~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt-------~ 333 (433)
T PRK04922 261 RLALTLSRDGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLT-------F 333 (433)
T ss_pred EEEEEEeCCCCceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEee-------c
Confidence 7764 45554 699999873 333333332 24567786 776 55444 3444 666677665543321 1
Q ss_pred CCCCeEEEEEcCCceEEEEEecCCC--eEEEEECCCCCeEEEccCCCCCeEEEEEecCCCEEEEEECC---CcEEEEECC
Q 001455 961 QSKPINSLVVYKDWLYSASSSVEGS--NIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSA---SSLQIWLRG 1035 (1074)
Q Consensus 961 h~~~I~sL~~spd~i~las~S~dDg--tI~IWDl~t~~~i~~l~gH~~~VtsLafSPDG~~LaSGS~D---GtIrIWDl~ 1035 (1074)
++.......++|++.+++..+.+++ .|.+||..++.... +. +........|+|||++++..+.+ +.+.+++..
T Consensus 334 ~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~-Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~ 411 (433)
T PRK04922 334 QGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVRT-LT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTD 411 (433)
T ss_pred CCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeEE-CC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence 2233456889999988776543333 69999998877553 32 22345577999999998877653 457777774
Q ss_pred CCcEEEEEeCC-CCeEEEEEcC
Q 001455 1036 TQQKVGRISAG-SKITSLLTAN 1056 (1074)
Q Consensus 1036 tg~~l~tL~~h-s~VtsLa~dg 1056 (1074)
+.....+..+ +.+...+|++
T Consensus 412 -g~~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 412 -GRVRQRLVSADGEVREPAWSP 432 (433)
T ss_pred -CCceEEcccCCCCCCCCccCC
Confidence 4445555443 3455555543
No 214
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.08 E-value=4.1e-08 Score=116.75 Aligned_cols=227 Identities=11% Similarity=0.040 Sum_probs=145.3
Q ss_pred CcEEEEECCCCCeeEEEEeccCCCCEEEEEEcCCCCEEEEEeC---CCeEEEEEccCCceEEEEEeccCCCe--EEEccC
Q 001455 814 GSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSA---DKTIGVWQMVQRKLELIEVIATKEPI--RKLDTY 888 (1074)
Q Consensus 814 GtVrIWDl~t~~~~~i~tl~gH~~~VtsLafSpdg~~LaSGS~---DGtIrIWDl~tg~~~~~~~~~h~~~V--~s~s~d 888 (1074)
..|.+||.++... ..+..|...+.+.+|+|||+.|+..+. +..|.+||+.+++.... ..+...+ ..|+|+
T Consensus 182 ~~l~~~d~dg~~~---~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l--~~~~g~~~~~~~SPD 256 (435)
T PRK05137 182 KRLAIMDQDGANV---RYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELV--GNFPGMTFAPRFSPD 256 (435)
T ss_pred eEEEEECCCCCCc---EEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEe--ecCCCcccCcEECCC
Confidence 4788899876543 456678889999999999999887653 46899999998865332 2233333 358999
Q ss_pred CCeEE-EEecCC--eEEEEeCC-CceeeeecCC-CeEEEEEe-CCE-EEEEE-CC--CcEEEEEccCCceeeeccccccc
Q 001455 889 GKTIF-ASTQGH--RMKVIDSS-RTLKDIYRSK-GIKSMSVV-QGK-IYIGC-MD--SSIQELAVSNNVEREIKAPFKSW 958 (1074)
Q Consensus 889 g~~L~-sgS~Dg--tI~VWDl~-~~l~~l~~~~-~V~sLa~s-dgk-LlaGs-~D--gsI~IwDl~tg~~~~i~~~~r~~ 958 (1074)
|+.++ +.+.++ .|++||+. +....+..+. ......|+ ||+ ++..+ .+ ..|++||+.++....+.
T Consensus 257 G~~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt------ 330 (435)
T PRK05137 257 GRKVVMSLSQGGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRIS------ 330 (435)
T ss_pred CCEEEEEEecCCCceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEee------
Confidence 99775 445555 47777876 3334443333 34567776 776 55444 33 36888888776543331
Q ss_pred cCCCCCeEEEEEcCCceEEEEEecCC--CeEEEEECCCCCeEEEccCCCCCeEEEEEecCCCEEEEEECC------CcEE
Q 001455 959 RLQSKPINSLVVYKDWLYSASSSVEG--SNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSA------SSLQ 1030 (1074)
Q Consensus 959 ~~h~~~I~sL~~spd~i~las~S~dD--gtI~IWDl~t~~~i~~l~gH~~~VtsLafSPDG~~LaSGS~D------GtIr 1030 (1074)
.+...+....++|++.+++..+.++ ..|.+||..++.. +.+. +...+....|+|||++|+..+.+ ..++
T Consensus 331 -~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~ 407 (435)
T PRK05137 331 -FGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLY 407 (435)
T ss_pred -cCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-Eecc-CCCCCCCCeECCCCCEEEEEEccCCCCCcceEE
Confidence 1233455678999998877655333 3688888866553 3332 22346788999999998776543 2577
Q ss_pred EEECCCCcEEEEEeCCCCeEEEEEc
Q 001455 1031 IWLRGTQQKVGRISAGSKITSLLTA 1055 (1074)
Q Consensus 1031 IWDl~tg~~l~tL~~hs~VtsLa~d 1055 (1074)
++++..+.. ..+...+.+...+|+
T Consensus 408 ~~dl~g~~~-~~l~~~~~~~~p~Ws 431 (435)
T PRK05137 408 TVDLTGRNE-REVPTPGDASDPAWS 431 (435)
T ss_pred EEECCCCce-EEccCCCCccCcccC
Confidence 778766544 444433334444554
No 215
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.06 E-value=2.5e-08 Score=118.29 Aligned_cols=230 Identities=12% Similarity=0.081 Sum_probs=140.6
Q ss_pred CcEEEEECCCCCeeEEEEeccCCCCEEEEEEcCCCCEEEEEeCC---CeEEEEEccCCceEEEEEeccCCCeEEEccCCC
Q 001455 814 GSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSAD---KTIGVWQMVQRKLELIEVIATKEPIRKLDTYGK 890 (1074)
Q Consensus 814 GtVrIWDl~t~~~~~i~tl~gH~~~VtsLafSpdg~~LaSGS~D---GtIrIWDl~tg~~~~~~~~~h~~~V~s~s~dg~ 890 (1074)
..|.+||..+.. ...+..+...+.+.+|+|||+.|+.++.+ ..|.+||+.+|+...............|+|+|+
T Consensus 176 ~~L~~~D~dG~~---~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~ 252 (427)
T PRK02889 176 YQLQISDADGQN---AQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGR 252 (427)
T ss_pred cEEEEECCCCCC---ceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCC
Confidence 467777776543 24455778889999999999998876643 459999999887543221111122346899999
Q ss_pred eEEE-EecCCeEEEEe--CC-CceeeeecCC-CeEEEEEe-CCE-EEEEE-CCCcEEEEEc--cCCceeeeccccccccC
Q 001455 891 TIFA-STQGHRMKVID--SS-RTLKDIYRSK-GIKSMSVV-QGK-IYIGC-MDSSIQELAV--SNNVEREIKAPFKSWRL 960 (1074)
Q Consensus 891 ~L~s-gS~DgtI~VWD--l~-~~l~~l~~~~-~V~sLa~s-dgk-LlaGs-~DgsI~IwDl--~tg~~~~i~~~~r~~~~ 960 (1074)
.++. .+.++...+|. .. +....+..+. ......|+ ||+ ++..+ .+|...+|.+ .++....+. .
T Consensus 253 ~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt-------~ 325 (427)
T PRK02889 253 TLAVALSRDGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVT-------F 325 (427)
T ss_pred EEEEEEccCCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEe-------c
Confidence 8764 56777666665 43 3333333322 34566786 776 54444 3456666655 444322221 1
Q ss_pred CCCCeEEEEEcCCceEEEEEecCCC--eEEEEECCCCCeEEEccCCCCCeEEEEEecCCCEEEEEECCC-c--EEEEECC
Q 001455 961 QSKPINSLVVYKDWLYSASSSVEGS--NIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSAS-S--LQIWLRG 1035 (1074)
Q Consensus 961 h~~~I~sL~~spd~i~las~S~dDg--tI~IWDl~t~~~i~~l~gH~~~VtsLafSPDG~~LaSGS~DG-t--IrIWDl~ 1035 (1074)
.+.......++|++.+++..+.+++ .|.+||..++...... .+ .......|+|||++|+.++.++ . +++.+.
T Consensus 326 ~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt-~~-~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~- 402 (427)
T PRK02889 326 TGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALT-DT-TRDESPSFAPNGRYILYATQQGGRSVLAAVSS- 402 (427)
T ss_pred CCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEcc-CC-CCccCceECCCCCEEEEEEecCCCEEEEEEEC-
Confidence 1223345789999988876553333 6999999888754433 22 2346789999999998877544 2 444455
Q ss_pred CCcEEEEEeCC-CCeEEEEEcC
Q 001455 1036 TQQKVGRISAG-SKITSLLTAN 1056 (1074)
Q Consensus 1036 tg~~l~tL~~h-s~VtsLa~dg 1056 (1074)
+|.....+..+ +.+...+|++
T Consensus 403 ~g~~~~~l~~~~g~~~~p~wsp 424 (427)
T PRK02889 403 DGRIKQRLSVQGGDVREPSWGP 424 (427)
T ss_pred CCCceEEeecCCCCCCCCccCC
Confidence 45555555544 3455555553
No 216
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.05 E-value=1.2e-07 Score=110.34 Aligned_cols=259 Identities=14% Similarity=0.122 Sum_probs=155.8
Q ss_pred EEEEECCCcEEEEECCCCCeeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEccCCceEEEEEeccCCCeEEEc
Q 001455 807 LCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATKEPIRKLD 886 (1074)
Q Consensus 807 LaSGs~DGtVrIWDl~t~~~~~i~tl~gH~~~VtsLafSpdg~~LaSGS~DGtIrIWDl~tg~~~~~~~~~h~~~V~s~s 886 (1074)
+++-..+|.|.|.|..+.+. +.++......-..+.|+|||+++++++.||.|.++|+.+++.......+....-..++
T Consensus 9 ~V~~~~~~~v~viD~~t~~~--~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i~~s 86 (369)
T PF02239_consen 9 YVVERGSGSVAVIDGATNKV--VARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGIAVS 86 (369)
T ss_dssp EEEEGGGTEEEEEETTT-SE--EEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEEEE-
T ss_pred EEEecCCCEEEEEECCCCeE--EEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcceEEEc
Confidence 34566789999999998754 6777655444456789999999999999999999999999876655444444445688
Q ss_pred cCCCeEEEEe-cCCeEEEEeCC--Cceeeeec--------CCCeEEEEEe-C-CEEEEEE-CCCcEEEEEccCCceeeec
Q 001455 887 TYGKTIFAST-QGHRMKVIDSS--RTLKDIYR--------SKGIKSMSVV-Q-GKIYIGC-MDSSIQELAVSNNVEREIK 952 (1074)
Q Consensus 887 ~dg~~L~sgS-~DgtI~VWDl~--~~l~~l~~--------~~~V~sLa~s-d-gkLlaGs-~DgsI~IwDl~tg~~~~i~ 952 (1074)
++|++++++. ..+.+.++|.. +..+.+.. ...+..+..+ . ..++..- ..+.|.+.|..........
T Consensus 87 ~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~ 166 (369)
T PF02239_consen 87 PDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVT 166 (369)
T ss_dssp -TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEE
T ss_pred CCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecccccccee
Confidence 9999998776 67899999987 33444332 1235555554 3 3344444 4577888887664322211
Q ss_pred cccccccCCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeE----------------------------------
Q 001455 953 APFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQI---------------------------------- 998 (1074)
Q Consensus 953 ~~~r~~~~h~~~I~sL~~spd~i~las~S~dDgtI~IWDl~t~~~i---------------------------------- 998 (1074)
. ...+.......+.|++.|++.+....+.|-++|..++..+
T Consensus 167 ----~-i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~ 241 (369)
T PF02239_consen 167 ----T-IKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYF 241 (369)
T ss_dssp ----E-EE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSS
T ss_pred ----e-ecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccce
Confidence 1 1225566778888888776655444455666665544322
Q ss_pred ---------------------EEccCCCCCeEEEEEecCCCEEEEE----ECCCcEEEEECCCCcEEEEEeCCC--CeEE
Q 001455 999 ---------------------SIAPEKGTTIQAMAVVEDFIYLNYN----SSASSLQIWLRGTQQKVGRISAGS--KITS 1051 (1074)
Q Consensus 999 ---------------------~~l~gH~~~VtsLafSPDG~~LaSG----S~DGtIrIWDl~tg~~l~tL~~hs--~Vts 1051 (1074)
+.+...+.+ .-+..+|++++++.. ...++|.++|.++.+.+.++.... ++..
T Consensus 242 ~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h 320 (369)
T PF02239_consen 242 AIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVH 320 (369)
T ss_dssp EEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEE
T ss_pred ecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEec
Confidence 222122222 446668999999987 455899999999998888887543 3777
Q ss_pred EEEc--CCEEEE--EECCCcEEEEec
Q 001455 1052 LLTA--NDIVLC--GTETGLIKGWIP 1073 (1074)
Q Consensus 1052 La~d--g~~LaS--Gs~DG~IrIWdi 1073 (1074)
+.|+ |+.+.. ...+|.|.|||.
T Consensus 321 ~ef~~dG~~v~vS~~~~~~~i~v~D~ 346 (369)
T PF02239_consen 321 MEFNPDGKEVWVSVWDGNGAIVVYDA 346 (369)
T ss_dssp EEE-TTSSEEEEEEE--TTEEEEEET
T ss_pred cEECCCCCEEEEEEecCCCEEEEEEC
Confidence 7776 664443 333347999984
No 217
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.04 E-value=8.4e-09 Score=111.18 Aligned_cols=181 Identities=11% Similarity=0.184 Sum_probs=132.0
Q ss_pred CCCCCcEEEEEEe---CCEEEEEECCCcEEEEECCCCCe-eEEEEeccCCCCEEEEEEcCCCCE-EEEEeCCCeEEEEEc
Q 001455 791 HKCSGAVTALIYY---KGLLCSGFSDGSIKMWDIKKQSA-MLVWDVKEHRKAVTSFSLFEPGES-LLSGSADKTIGVWQM 865 (1074)
Q Consensus 791 ~gH~~~VtsLafS---~~~LaSGs~DGtVrIWDl~t~~~-~~i~tl~gH~~~VtsLafSpdg~~-LaSGS~DGtIrIWDl 865 (1074)
..|..++++..|+ ++++.+++-|.+..|||++++.. .....+-.|...|..++|...+.. ++|+|.||.||++|+
T Consensus 147 s~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDL 226 (364)
T KOG0290|consen 147 SEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDL 226 (364)
T ss_pred cccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEe
Confidence 4678999999999 67999999999999999998732 234456699999999999986655 899999999999999
Q ss_pred cCCceEEEEEe--ccCCCeEEEcc---CCCeEEEEecC-CeEEEEeCC---Cceeeeec-CCCeEEEEEe---CCEEEEE
Q 001455 866 VQRKLELIEVI--ATKEPIRKLDT---YGKTIFASTQG-HRMKVIDSS---RTLKDIYR-SKGIKSMSVV---QGKIYIG 932 (1074)
Q Consensus 866 ~tg~~~~~~~~--~h~~~V~s~s~---dg~~L~sgS~D-gtI~VWDl~---~~l~~l~~-~~~V~sLa~s---dgkLlaG 932 (1074)
+.-.-...... ....+...+++ +.+++++-..| ..|.+.|++ .....+.. ...|..++|. ..++.++
T Consensus 227 R~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hicta 306 (364)
T KOG0290|consen 227 RSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTA 306 (364)
T ss_pred cccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeec
Confidence 87543222222 22445555654 45577776655 489999998 33344444 4569999994 4458889
Q ss_pred ECCCcEEEEEccCCceeeeccccccccCCCCCeEEEEEcC
Q 001455 933 CMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYK 972 (1074)
Q Consensus 933 s~DgsI~IwDl~tg~~~~i~~~~r~~~~h~~~I~sL~~sp 972 (1074)
+.|..+-+||+..--......|.-.+. .+..|+.+.+++
T Consensus 307 GDD~qaliWDl~q~~~~~~~dPilay~-a~~EVNqi~Ws~ 345 (364)
T KOG0290|consen 307 GDDCQALIWDLQQMPRENGEDPILAYT-AGGEVNQIQWSS 345 (364)
T ss_pred CCcceEEEEecccccccCCCCchhhhh-ccceeeeeeecc
Confidence 999999999998744333334444444 467788888873
No 218
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.03 E-value=2.4e-09 Score=124.05 Aligned_cols=151 Identities=19% Similarity=0.301 Sum_probs=116.7
Q ss_pred CCcEEEEEEe---CCEEEEEECCCcEEEEECCCCCe-----eEEEEeccCCCCEEEEEEcCCC-CEEEEEeCCCeEEEEE
Q 001455 794 SGAVTALIYY---KGLLCSGFSDGSIKMWDIKKQSA-----MLVWDVKEHRKAVTSFSLFEPG-ESLLSGSADKTIGVWQ 864 (1074)
Q Consensus 794 ~~~VtsLafS---~~~LaSGs~DGtVrIWDl~t~~~-----~~i~tl~gH~~~VtsLafSpdg-~~LaSGS~DGtIrIWD 864 (1074)
...|+.+.|. +..||.++.||.|++|.+..+.. ++-..+++|...|+++.|+|-- +.|++++.|-+|++||
T Consensus 627 gt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWD 706 (1012)
T KOG1445|consen 627 GTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWD 706 (1012)
T ss_pred CceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeee
Confidence 5679999998 55899999999999999865422 2456678999999999999954 4488999999999999
Q ss_pred ccCCceEEEEEeccCCCeEE--EccCCCeEEEEecCCeEEEEeCCCceeeeecCCC-----eEEEEEe-CCEEE-EEE--
Q 001455 865 MVQRKLELIEVIATKEPIRK--LDTYGKTIFASTQGHRMKVIDSSRTLKDIYRSKG-----IKSMSVV-QGKIY-IGC-- 933 (1074)
Q Consensus 865 l~tg~~~~~~~~~h~~~V~s--~s~dg~~L~sgS~DgtI~VWDl~~~l~~l~~~~~-----V~sLa~s-dgkLl-aGs-- 933 (1074)
+.++... ..+.+|.+.|.. |+++|+.+++++.||+|+||+.+.....++.+.+ --.+.|. +|+++ +.+
T Consensus 707 l~~~~~~-~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfd 785 (1012)
T KOG1445|consen 707 LANAKLY-SRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFD 785 (1012)
T ss_pred hhhhhhh-heeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEeccc
Confidence 9998744 466789999986 6899999999999999999998854444443222 2345665 77743 333
Q ss_pred --CCCcEEEEEccC
Q 001455 934 --MDSSIQELAVSN 945 (1074)
Q Consensus 934 --~DgsI~IwDl~t 945 (1074)
....|.+||..+
T Consensus 786 k~SeRQv~~Y~Aq~ 799 (1012)
T KOG1445|consen 786 KSSERQVQMYDAQT 799 (1012)
T ss_pred ccchhhhhhhhhhh
Confidence 345677888765
No 219
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.03 E-value=5.9e-09 Score=114.44 Aligned_cols=263 Identities=15% Similarity=0.172 Sum_probs=170.0
Q ss_pred CCcEEEEEEe--CCEEEEEECCCcEEEEECCCC---CeeEEEEeccCC------------CCEEEEEEcCCCCE--EEEE
Q 001455 794 SGAVTALIYY--KGLLCSGFSDGSIKMWDIKKQ---SAMLVWDVKEHR------------KAVTSFSLFEPGES--LLSG 854 (1074)
Q Consensus 794 ~~~VtsLafS--~~~LaSGs~DGtVrIWDl~t~---~~~~i~tl~gH~------------~~VtsLafSpdg~~--LaSG 854 (1074)
.+-|.+|.|. |++||||..+|.|.++.-... +.....+++.|. ..|..+.|.+++.. ++..
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 5788999999 889999999999999965432 222344555554 46888999987765 6777
Q ss_pred eCCCeEEEEEccCCceEEEE-Ee---ccCCCeEEE-----ccCCCeEEEEecCCeEEEEeCCCceeeee--cCCCeEEEE
Q 001455 855 SADKTIGVWQMVQRKLELIE-VI---ATKEPIRKL-----DTYGKTIFASTQGHRMKVIDSSRTLKDIY--RSKGIKSMS 923 (1074)
Q Consensus 855 S~DGtIrIWDl~tg~~~~~~-~~---~h~~~V~s~-----s~dg~~L~sgS~DgtI~VWDl~~~l~~l~--~~~~V~sLa 923 (1074)
+.|++|++|.+......... .. +....+.++ .++...+.+. +.+.+. +.-.|.+++
T Consensus 105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~-------------prRv~aNaHtyhiNSIS 171 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEAS-------------PRRVYANAHTYHINSIS 171 (433)
T ss_pred cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeee-------------eeeeccccceeEeeeee
Confidence 88999999998764322100 00 011111111 1111111111 111111 123488899
Q ss_pred Ee-CCEEEEEECCCcEEEEEccCCce----eeeccccccccCCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeE
Q 001455 924 VV-QGKIYIGCMDSSIQELAVSNNVE----REIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQI 998 (1074)
Q Consensus 924 ~s-dgkLlaGs~DgsI~IwDl~tg~~----~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S~dDgtI~IWDl~t~~~i 998 (1074)
+. |+..+....|=.|.+|++.-... ..++ | ..+..-..-|++..|||....++..++..|+|++.|++...+.
T Consensus 172 ~NsD~Et~lSADdLRINLWnlei~d~sFnIVDIK-P-~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLC 249 (433)
T KOG1354|consen 172 VNSDKETFLSADDLRINLWNLEIIDQSFNIVDIK-P-ANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALC 249 (433)
T ss_pred ecCccceEeeccceeeeeccccccCCceeEEEcc-c-cCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhh
Confidence 86 77777788899999999864221 1111 1 0111113568888999987777767767899999998743211
Q ss_pred ----EEc------------cCCCCCeEEEEEecCCCEEEEEECCCcEEEEEC-CCCcEEEEEeCCC-------------C
Q 001455 999 ----SIA------------PEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLR-GTQQKVGRISAGS-------------K 1048 (1074)
Q Consensus 999 ----~~l------------~gH~~~VtsLafSPDG~~LaSGS~DGtIrIWDl-~tg~~l~tL~~hs-------------~ 1048 (1074)
+.+ .+--..|..+.|+++|+|+++-+ --+|++||+ ...+++.+++.|. .
T Consensus 250 d~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRD-yltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~ 328 (433)
T KOG1354|consen 250 DAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRD-YLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDA 328 (433)
T ss_pred cchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEec-cceeEEEeccccCCcceEEeehHhHHHHHHHHhhccc
Confidence 111 11123688899999999999975 378999998 5677888888762 1
Q ss_pred eEE---EEEcCC--EEEEEECCCcEEEEe
Q 001455 1049 ITS---LLTAND--IVLCGTETGLIKGWI 1072 (1074)
Q Consensus 1049 Vts---La~dg~--~LaSGs~DG~IrIWd 1072 (1074)
|.. ++|+|+ ++++|+..+.+++++
T Consensus 329 IfdKFec~~sg~~~~v~TGsy~n~frvf~ 357 (433)
T KOG1354|consen 329 IFDKFECSWSGNDSYVMTGSYNNVFRVFN 357 (433)
T ss_pred hhheeEEEEcCCcceEecccccceEEEec
Confidence 332 667766 999999999999987
No 220
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.99 E-value=9e-09 Score=115.92 Aligned_cols=187 Identities=16% Similarity=0.139 Sum_probs=130.2
Q ss_pred CeEEEccCCCeEEEEecCCeEEEEeCCCc---eeeeecCCCeEEEEEe-CCEEE-EEECCCcEEEEEccCCceeeecccc
Q 001455 881 PIRKLDTYGKTIFASTQGHRMKVIDSSRT---LKDIYRSKGIKSMSVV-QGKIY-IGCMDSSIQELAVSNNVEREIKAPF 955 (1074)
Q Consensus 881 ~V~s~s~dg~~L~sgS~DgtI~VWDl~~~---l~~l~~~~~V~sLa~s-dgkLl-aGs~DgsI~IwDl~tg~~~~i~~~~ 955 (1074)
.+.++..+|..+++++.||++++|++... .....++..|.++.|+ ||+++ +.+.| ..++|++.+|....-..|
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~- 225 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTP- 225 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCC-
Confidence 56678899999999999999999996532 2333457789999997 99755 46667 999999999854332222
Q ss_pred ccccCCCCCeEEEEEcCCc----eEEEEEecCCCeEEEEECCCCC-----eEEEccCCCCCeEEEEEecCCCEEEEEECC
Q 001455 956 KSWRLQSKPINSLVVYKDW----LYSASSSVEGSNIKEWRRHRKP-----QISIAPEKGTTIQAMAVVEDFIYLNYNSSA 1026 (1074)
Q Consensus 956 r~~~~h~~~I~sL~~spd~----i~las~S~dDgtI~IWDl~t~~-----~i~~l~gH~~~VtsLafSPDG~~LaSGS~D 1026 (1074)
.........+.|..+. .++++.....+.|+.|++.... ..+....-...|+++++|+||++++.|+.|
T Consensus 226 ---~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~d 302 (398)
T KOG0771|consen 226 ---FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMD 302 (398)
T ss_pred ---cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccC
Confidence 1123334455555444 3444444345566666643211 111222223469999999999999999999
Q ss_pred CcEEEEECCCCcEEEEEe-CCC-CeEEEEEc--CCEEEEEECCCcEEEEe
Q 001455 1027 SSLQIWLRGTQQKVGRIS-AGS-KITSLLTA--NDIVLCGTETGLIKGWI 1072 (1074)
Q Consensus 1027 GtIrIWDl~tg~~l~tL~-~hs-~VtsLa~d--g~~LaSGs~DG~IrIWd 1072 (1074)
|.|-|++..+.+.++-.+ .|. -|+.+.|. .+++++.+.|..+.|-.
T Consensus 303 GsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~ 352 (398)
T KOG0771|consen 303 GSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTK 352 (398)
T ss_pred CcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEE
Confidence 999999999998887665 453 49998876 45888888888777654
No 221
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=98.96 E-value=1.9e-08 Score=107.36 Aligned_cols=232 Identities=14% Similarity=0.134 Sum_probs=152.4
Q ss_pred CCCCcEEEEEEe-CCEEEEEECCCcEEEEECCCCCeeEEEEeccCCCCEEEEEEcCC-----CCE----EEEEeCCCe-E
Q 001455 792 KCSGAVTALIYY-KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEP-----GES----LLSGSADKT-I 860 (1074)
Q Consensus 792 gH~~~VtsLafS-~~~LaSGs~DGtVrIWDl~t~~~~~i~tl~gH~~~VtsLafSpd-----g~~----LaSGS~DGt-I 860 (1074)
.|...|+.+..- ++.+.+-+.|+.+.+|++..+....+ |.-.++++-|.+. ++. ++.-+.... +
T Consensus 54 ~g~~~it~lq~~p~d~l~tqgRd~~L~lw~ia~s~~i~i-----~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~ 128 (323)
T KOG0322|consen 54 FGRLFITNLQSIPNDSLDTQGRDPLLILWTIAYSAFISI-----HSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDET 128 (323)
T ss_pred hccceeeceeecCCcchhhcCCCceEEEEEccCcceEEE-----eeeeccccccccceeccCCCcchhheecCCcccchh
Confidence 356778888777 67899999999999999987654333 4445555555432 111 111110000 1
Q ss_pred EEEEccCCceEEEEE-----eccCCCeEEEcc---CCC--eEEEEecCCeEEEEeCCCceeee-------------ecCC
Q 001455 861 GVWQMVQRKLELIEV-----IATKEPIRKLDT---YGK--TIFASTQGHRMKVIDSSRTLKDI-------------YRSK 917 (1074)
Q Consensus 861 rIWDl~tg~~~~~~~-----~~h~~~V~s~s~---dg~--~L~sgS~DgtI~VWDl~~~l~~l-------------~~~~ 917 (1074)
.+-|. +....... .+..+.+.++.. .+. .+++|-.+|.+.+||++...+.+ .+..
T Consensus 129 h~~D~--g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~q 206 (323)
T KOG0322|consen 129 HKQDG--GDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQ 206 (323)
T ss_pred hhhcc--CccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccC
Confidence 11111 11111111 112234555541 122 56777899999999998532221 1245
Q ss_pred CeEEEEEe--CCEEEEEECCCcEEEEEccCCc-eeeeccccccccCCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCC
Q 001455 918 GIKSMSVV--QGKIYIGCMDSSIQELAVSNNV-EREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHR 994 (1074)
Q Consensus 918 ~V~sLa~s--dgkLlaGs~DgsI~IwDl~tg~-~~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S~dDgtI~IWDl~t 994 (1074)
+|.++.+. -++=++|+.+..+..|++.... ...+. .........+..+.+-||+..+++.+ -|+.|++|+.++
T Consensus 207 pvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~---~e~~lknpGv~gvrIRpD~KIlATAG-WD~RiRVyswrt 282 (323)
T KOG0322|consen 207 PVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIR---KEITLKNPGVSGVRIRPDGKILATAG-WDHRIRVYSWRT 282 (323)
T ss_pred cceeeeechhhcCCcCCCccccceeeeeccccCccccc---ceEEecCCCccceEEccCCcEEeecc-cCCcEEEEEecc
Confidence 68888884 3445667778888888886531 11111 11122356688889999999999887 788999999999
Q ss_pred CCeEEEccCCCCCeEEEEEecCCCEEEEEECCCcEEEEEC
Q 001455 995 KPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLR 1034 (1074)
Q Consensus 995 ~~~i~~l~gH~~~VtsLafSPDG~~LaSGS~DGtIrIWDl 1034 (1074)
...+..+.-|.+.|++++|+|+...+|++|.|++|.+|++
T Consensus 283 l~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 283 LNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred CCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 9999999999999999999999999999999999999986
No 222
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=98.93 E-value=1.8e-07 Score=108.55 Aligned_cols=271 Identities=14% Similarity=0.142 Sum_probs=180.6
Q ss_pred CCCCcEEEEEEe-CC-E-EEEEECCCcEEEEECCCCCeeEEEEeccCC--CCEEEEEEcCCCCEEEEEeCCCeEEEEEcc
Q 001455 792 KCSGAVTALIYY-KG-L-LCSGFSDGSIKMWDIKKQSAMLVWDVKEHR--KAVTSFSLFEPGESLLSGSADKTIGVWQMV 866 (1074)
Q Consensus 792 gH~~~VtsLafS-~~-~-LaSGs~DGtVrIWDl~t~~~~~i~tl~gH~--~~VtsLafSpdg~~LaSGS~DGtIrIWDl~ 866 (1074)
+|...-+.|..+ +| | +|||.+--.|++||+.... ..|..|. ..|.-.-.+.|-..++---.|.+|-+..-
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLS----LKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak- 123 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLS----LKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAK- 123 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccce----eeeeecccccceeEEEeccchhhheEeecCceeeehhh-
Confidence 677888889999 44 4 8899999999999998653 3445554 34555555666555666677888776542
Q ss_pred CCceEEEEEeccCCCeEEEccCCCeEEEEecCCeEEEEeCC--Cceeeeec-CCCeEEEEEe--CCEEEEEECCCcEEEE
Q 001455 867 QRKLELIEVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSS--RTLKDIYR-SKGIKSMSVV--QGKIYIGCMDSSIQEL 941 (1074)
Q Consensus 867 tg~~~~~~~~~h~~~V~s~s~dg~~L~sgS~DgtI~VWDl~--~~l~~l~~-~~~V~sLa~s--dgkLlaGs~DgsI~Iw 941 (1074)
-|...... .+..+.-.++..-..-++.++....|+-+++. +-+..+.. ...++++.+. +|-+.+|+.+|.|..|
T Consensus 124 ~G~hy~~R-IP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfw 202 (703)
T KOG2321|consen 124 YGRHYRTR-IPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFW 202 (703)
T ss_pred cCeeeeee-cCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEe
Confidence 23211111 11111112233333345666666677777776 23333333 3668888886 6667789999999999
Q ss_pred EccCCceeeecccccc-----ccCCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEccCCC--CCeEEEEEe
Q 001455 942 AVSNNVEREIKAPFKS-----WRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKG--TTIQAMAVV 1014 (1074)
Q Consensus 942 Dl~tg~~~~i~~~~r~-----~~~h~~~I~sL~~spd~i~las~S~dDgtI~IWDl~t~~~i~~l~gH~--~~VtsLafS 1014 (1074)
|.++............ .......|+++.|..+|..++.+. ..|.+.|||+++..++... .|. -+|..+.|.
T Consensus 203 DpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGt-s~G~v~iyDLRa~~pl~~k-dh~~e~pi~~l~~~ 280 (703)
T KOG2321|consen 203 DPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGT-STGSVLIYDLRASKPLLVK-DHGYELPIKKLDWQ 280 (703)
T ss_pred cchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeec-cCCcEEEEEcccCCceeec-ccCCccceeeeccc
Confidence 9988544222111111 112244699999999999988777 6789999999887765433 444 488899997
Q ss_pred cC--CCEEEEEECCCcEEEEECCCCcEEEEEeCCCCeEEEE--EcCCEEEEEECCCcEEEE
Q 001455 1015 ED--FIYLNYNSSASSLQIWLRGTQQKVGRISAGSKITSLL--TANDIVLCGTETGLIKGW 1071 (1074)
Q Consensus 1015 PD--G~~LaSGS~DGtIrIWDl~tg~~l~tL~~hs~VtsLa--~dg~~LaSGs~DG~IrIW 1071 (1074)
+. +..++|.. ...++|||-.+|+....+..-..++.++ +++.++++|-.++.+..|
T Consensus 281 ~~~~q~~v~S~D-k~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~Ane~~~m~~y 340 (703)
T KOG2321|consen 281 DTDQQNKVVSMD-KRILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFTANESSKMHTY 340 (703)
T ss_pred ccCCCceEEecc-hHHhhhcccccCCceeeccccCCcCceeeecCCceEEEecCCCcceeE
Confidence 64 45566653 5789999999999999888776676655 456699999888877654
No 223
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.92 E-value=3.3e-06 Score=97.55 Aligned_cols=263 Identities=12% Similarity=0.169 Sum_probs=168.8
Q ss_pred EEEEECC----CcEEEEEC--CCCCeeEEEEeccCCCCEEEEEEcCCCCEEEEEeC----CCeEEEEEccC--CceEEEE
Q 001455 807 LCSGFSD----GSIKMWDI--KKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSA----DKTIGVWQMVQ--RKLELIE 874 (1074)
Q Consensus 807 LaSGs~D----GtVrIWDl--~t~~~~~i~tl~gH~~~VtsLafSpdg~~LaSGS~----DGtIrIWDl~t--g~~~~~~ 874 (1074)
++.|+.. +.|.+|++ ++++...+... .-......++++|++++|+++.. +|.|..|++.. +.+....
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~-~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~ 80 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTV-AEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLN 80 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEE-EESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeee-cCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEee
Confidence 4566666 78999988 44544444443 23455678999999999998876 57899998876 4543333
Q ss_pred Eec--cCCCe-EEEccCCCeEEEEe-cCCeEEEEeCCC--cee----eee-----------cCCCeEEEEEe-CCE-EEE
Q 001455 875 VIA--TKEPI-RKLDTYGKTIFAST-QGHRMKVIDSSR--TLK----DIY-----------RSKGIKSMSVV-QGK-IYI 931 (1074)
Q Consensus 875 ~~~--h~~~V-~s~s~dg~~L~sgS-~DgtI~VWDl~~--~l~----~l~-----------~~~~V~sLa~s-dgk-Lla 931 (1074)
... ...+. .++++++++++++. .+|.|.++++.. .+. ... ......++.++ +|+ +++
T Consensus 81 ~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v 160 (345)
T PF10282_consen 81 SVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYV 160 (345)
T ss_dssp EEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEE
T ss_pred eeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEE
Confidence 222 22223 35788999998887 578999999873 111 111 12347788886 766 444
Q ss_pred -EECCCcEEEEEccCCc--eeeeccccccccCCCCCeEEEEEcCCceEEEEEecCCCeEEEEECC--CCCe--EEEcc--
Q 001455 932 -GCMDSSIQELAVSNNV--EREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRH--RKPQ--ISIAP-- 1002 (1074)
Q Consensus 932 -Gs~DgsI~IwDl~tg~--~~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S~dDgtI~IWDl~--t~~~--i~~l~-- 1002 (1074)
.-....|++|++.... ..... ..-...+.....+.|+|++.++......+++|.+++.. .+.. ++...
T Consensus 161 ~dlG~D~v~~~~~~~~~~~l~~~~---~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~ 237 (345)
T PF10282_consen 161 PDLGADRVYVYDIDDDTGKLTPVD---SIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTL 237 (345)
T ss_dssp EETTTTEEEEEEE-TTS-TEEEEE---EEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESC
T ss_pred EecCCCEEEEEEEeCCCceEEEee---ccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeec
Confidence 3345679999997754 21110 01123366788999999998887777678899999977 4432 22111
Q ss_pred --CC--CCCeEEEEEecCCCEEEEEE-CCCcEEEEECC--CCc--EEEEEeCCCC-eEEEEE--cCCEEEEEE-CCCcEE
Q 001455 1003 --EK--GTTIQAMAVVEDFIYLNYNS-SASSLQIWLRG--TQQ--KVGRISAGSK-ITSLLT--ANDIVLCGT-ETGLIK 1069 (1074)
Q Consensus 1003 --gH--~~~VtsLafSPDG~~LaSGS-~DGtIrIWDl~--tg~--~l~tL~~hs~-VtsLa~--dg~~LaSGs-~DG~Ir 1069 (1074)
+. ......++++|||++|.++. .+++|.+|++. +|+ .+..+...+. .+.+++ +|++|+++. .++.|.
T Consensus 238 ~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~ 317 (345)
T PF10282_consen 238 PEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVS 317 (345)
T ss_dssp ETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEE
T ss_pred cccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEE
Confidence 11 12578899999999987766 66889999983 343 3555554433 677766 688888776 667899
Q ss_pred EEec
Q 001455 1070 GWIP 1073 (1074)
Q Consensus 1070 IWdi 1073 (1074)
+|++
T Consensus 318 vf~~ 321 (345)
T PF10282_consen 318 VFDI 321 (345)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8864
No 224
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=98.92 E-value=3.5e-08 Score=121.06 Aligned_cols=260 Identities=15% Similarity=0.143 Sum_probs=170.3
Q ss_pred CCCcEEEEEEeCCEEEEEECCCcEEEEECCCCCee----EEEEeccCC--CCEEEEEEcCCCCEEEEEeCCCeEEEEEcc
Q 001455 793 CSGAVTALIYYKGLLCSGFSDGSIKMWDIKKQSAM----LVWDVKEHR--KAVTSFSLFEPGESLLSGSADKTIGVWQMV 866 (1074)
Q Consensus 793 H~~~VtsLafS~~~LaSGs~DGtVrIWDl~t~~~~----~i~tl~gH~--~~VtsLafSpdg~~LaSGS~DGtIrIWDl~ 866 (1074)
|-+++++..+-.+++.+|+ .-.|.+||...+... ....+..|. +.+. -.+.++++|..-+.+..=+..
T Consensus 6 ~~~~l~~~~~~~~~llag~-gp~i~~yd~~s~~li~~~~~~~~~~~H~~e~~~~-----l~~~~~v~~~~~~~v~~~~~~ 79 (967)
T KOG0974|consen 6 SLGPLNLPQLVSDYLLAGS-GPEILVYDLSSGCLIRHLIQSKILEVHRGEGKVK-----LLSGKIVTCAKSDEVYVKEAS 79 (967)
T ss_pred ccccccchhhccceeeecC-CCceEEeeCCchhHhhhhhhhcccccccccccce-----eccceEEEEEeecceeecchh
Confidence 3455555555544544433 335889999876421 111223341 0000 123345555544444432222
Q ss_pred CCceEEEEEeccCCCe--EEEccCCCeEEEEecCCeEEEEeCCCcee--eeecCCCeE---EEEE--eCC--EEEEEECC
Q 001455 867 QRKLELIEVIATKEPI--RKLDTYGKTIFASTQGHRMKVIDSSRTLK--DIYRSKGIK---SMSV--VQG--KIYIGCMD 935 (1074)
Q Consensus 867 tg~~~~~~~~~h~~~V--~s~s~dg~~L~sgS~DgtI~VWDl~~~l~--~l~~~~~V~---sLa~--sdg--kLlaGs~D 935 (1074)
.... ......+ ..+......++.++.++.+.+||...... .+....... ++-+ +.. ++++|+.-
T Consensus 80 ~~~~-----~~~s~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~ 154 (967)
T KOG0974|consen 80 NQII-----ERFSDWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVF 154 (967)
T ss_pred hhhh-----hhccccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEecccc
Confidence 1110 1111112 23556777899999999999999873322 222222211 2222 222 26678899
Q ss_pred CcEEEEEccCCceeeeccccccccCCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEE-EccCCCCCeEEEEEe
Q 001455 936 SSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQIS-IAPEKGTTIQAMAVV 1014 (1074)
Q Consensus 936 gsI~IwDl~tg~~~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S~dDgtI~IWDl~t~~~i~-~l~gH~~~VtsLafS 1014 (1074)
+.|.+|+..... .+. ...+|...|.++.++.++.++++.+ +|.++++|++.+++... ...+|...|+.++|.
T Consensus 155 ~~iivW~~~~dn-----~p~-~l~GHeG~iF~i~~s~dg~~i~s~S-dDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~ 227 (967)
T KOG0974|consen 155 GEIIVWKPHEDN-----KPI-RLKGHEGSIFSIVTSLDGRYIASVS-DDRSIRLWPIDSREVLGCTGFGHSARVWACCFL 227 (967)
T ss_pred ccEEEEeccccC-----Ccc-eecccCCceEEEEEccCCcEEEEEe-cCcceeeeecccccccCcccccccceeEEEEec
Confidence 999999998322 111 3578999999999999999999998 99999999999988665 667999999999999
Q ss_pred cCCCEEEEEECCCcEEEEECCCCcEEEEEeCC--CCeEEEEEc--CCEEEEEECCCcEEEEec
Q 001455 1015 EDFIYLNYNSSASSLQIWLRGTQQKVGRISAG--SKITSLLTA--NDIVLCGTETGLIKGWIP 1073 (1074)
Q Consensus 1015 PDG~~LaSGS~DGtIrIWDl~tg~~l~tL~~h--s~VtsLa~d--g~~LaSGs~DG~IrIWdi 1073 (1074)
|+ .++|++.|.+.++|+. .++.+.++..| ..|+.++.+ .-.+++++.||.+++|+.
T Consensus 228 ~n--~i~t~gedctcrvW~~-~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l 287 (967)
T KOG0974|consen 228 PN--RIITVGEDCTCRVWGV-NGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDL 287 (967)
T ss_pred cc--eeEEeccceEEEEEec-ccceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhh
Confidence 99 9999999999999954 44555688888 339987765 338889999999999985
No 225
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.91 E-value=6.6e-08 Score=108.07 Aligned_cols=238 Identities=10% Similarity=0.060 Sum_probs=165.6
Q ss_pred CCCCEEEEEEcCCCCE--EEEEeCCCeEEEEEccCCceEEE-----EEeccCCCeEEEccCCCeEEEEecCCeEEEEeCC
Q 001455 835 HRKAVTSFSLFEPGES--LLSGSADKTIGVWQMVQRKLELI-----EVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSS 907 (1074)
Q Consensus 835 H~~~VtsLafSpdg~~--LaSGS~DGtIrIWDl~tg~~~~~-----~~~~h~~~V~s~s~dg~~L~sgS~DgtI~VWDl~ 907 (1074)
....|+.++|.-+++. +..++.|..+....+..+.+... .......+|..+...+..++++..+|.+.+|...
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~dg~Litc~~sG~l~~~~~k 133 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLADGTLITCVSSGNLQVRHDK 133 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhcCCEEEEEecCCcEEEEecc
Confidence 3456788888766654 55555676777776665543222 2334555667777777889999999999999876
Q ss_pred ------CceeeeecCCCeEEEEEe--CCEEEE-EECC--CcEEEEEccCCceeeecccc-ccccCC--CCCeEEEEEcCC
Q 001455 908 ------RTLKDIYRSKGIKSMSVV--QGKIYI-GCMD--SSIQELAVSNNVEREIKAPF-KSWRLQ--SKPINSLVVYKD 973 (1074)
Q Consensus 908 ------~~l~~l~~~~~V~sLa~s--dgkLla-Gs~D--gsI~IwDl~tg~~~~i~~~~-r~~~~h--~~~I~sL~~spd 973 (1074)
.....+..+.++..|.-. +..+++ |+.. ..+.+||+...+.+..-..+ ..+.+- .-.++.+.|-++
T Consensus 134 ~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g 213 (412)
T KOG3881|consen 134 SGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEG 213 (412)
T ss_pred CCccccccceeeecCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCC
Confidence 223333345556555554 233555 8888 88999999986432211100 001111 234567777766
Q ss_pred --ceEEEEEecCCCeEEEEECCCC-CeEEEccCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCcEEEE-EeCC-CC
Q 001455 974 --WLYSASSSVEGSNIKEWRRHRK-PQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGR-ISAG-SK 1048 (1074)
Q Consensus 974 --~i~las~S~dDgtI~IWDl~t~-~~i~~l~gH~~~VtsLafSPDG~~LaSGS~DGtIrIWDl~tg~~l~t-L~~h-s~ 1048 (1074)
...+++++ .-+.+++||...+ +++..+.--..+++++...|+|++|++|..-|.+..||.+++..+.. +++- +.
T Consensus 214 ~~~~~fat~T-~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGs 292 (412)
T KOG3881|consen 214 SPNYKFATIT-RYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGS 292 (412)
T ss_pred CCCceEEEEe-cceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCC
Confidence 44555554 4578999998754 45667766778899999999999999999999999999999999876 6654 66
Q ss_pred eEEEEEcCC--EEEEEECCCcEEEEec
Q 001455 1049 ITSLLTAND--IVLCGTETGLIKGWIP 1073 (1074)
Q Consensus 1049 VtsLa~dg~--~LaSGs~DG~IrIWdi 1073 (1074)
|+++..++. +++++|-|..|||+|+
T Consensus 293 irsih~hp~~~~las~GLDRyvRIhD~ 319 (412)
T KOG3881|consen 293 IRSIHCHPTHPVLASCGLDRYVRIHDI 319 (412)
T ss_pred cceEEEcCCCceEEeeccceeEEEeec
Confidence 999887755 9999999999999985
No 226
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.91 E-value=3.2e-08 Score=115.53 Aligned_cols=202 Identities=14% Similarity=0.100 Sum_probs=143.1
Q ss_pred cCCCCEEEEEeCCCeEEEEEccCCceEEEEEeccCCCeEEEccCCCeEEEEecCCeEEEEeCCCceeeeecCCCeEEEEE
Q 001455 845 FEPGESLLSGSADKTIGVWQMVQRKLELIEVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSSRTLKDIYRSKGIKSMSV 924 (1074)
Q Consensus 845 Spdg~~LaSGS~DGtIrIWDl~tg~~~~~~~~~h~~~V~s~s~dg~~L~sgS~DgtI~VWDl~~~l~~l~~~~~V~sLa~ 924 (1074)
.|.+.++|....||.+++||..+++....+.+ +... +..++-..|.+.-. .......+..+
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p-----~~~~----------s~t~~~~~w~L~~~----~s~~k~~~~~~ 62 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAP-----IASL----------SGTCTYTKWGLSAD----YSPMKWLSLEK 62 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeecc-----chhc----------cCcceeEEEEEEec----cchHHHHhHHH
Confidence 35567899999999999999998875332211 1112 22223334442200 00001111111
Q ss_pred ----e-CCE-EEEEECCCcEEEEEccCCceeeeccccccccCCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeE
Q 001455 925 ----V-QGK-IYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQI 998 (1074)
Q Consensus 925 ----s-dgk-LlaGs~DgsI~IwDl~tg~~~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S~dDgtI~IWDl~t~~~i 998 (1074)
+ +.. ++-|...|.|.+|++..|+...... -..|...+.++..+.+.-.+-+++ .|+.+..|+...+..+
T Consensus 63 ~~~~s~~t~~lvlgt~~g~v~~ys~~~g~it~~~s----t~~h~~~v~~~~~~~~~~ciyS~~-ad~~v~~~~~~~~~~~ 137 (541)
T KOG4547|consen 63 AKKASLDTSMLVLGTPQGSVLLYSVAGGEITAKLS----TDKHYGNVNEILDAQRLGCIYSVG-ADLKVVYILEKEKVII 137 (541)
T ss_pred HhhccCCceEEEeecCCccEEEEEecCCeEEEEEe----cCCCCCcceeeecccccCceEecC-CceeEEEEecccceee
Confidence 2 222 4558899999999999988755432 146788999999888766666655 6889999999999999
Q ss_pred EEccCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCcEEEEEeCC-CCeEEEEEc-------CCEEE-EEECCCcEE
Q 001455 999 SIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAG-SKITSLLTA-------NDIVL-CGTETGLIK 1069 (1074)
Q Consensus 999 ~~l~gH~~~VtsLafSPDG~~LaSGS~DGtIrIWDl~tg~~l~tL~~h-s~VtsLa~d-------g~~La-SGs~DG~Ir 1069 (1074)
+...+....+.+++.+|||..++++| ++|++||+++++.+.+|.|| ++|++++|. |.++. +...+.-|.
T Consensus 138 ~~~~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~ 215 (541)
T KOG4547|consen 138 RIWKEQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGIT 215 (541)
T ss_pred eeeccCCCccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeecccccccee
Confidence 99998889999999999999999987 78999999999999999999 558888763 45555 455566677
Q ss_pred EEe
Q 001455 1070 GWI 1072 (1074)
Q Consensus 1070 IWd 1072 (1074)
+|-
T Consensus 216 ~w~ 218 (541)
T KOG4547|consen 216 VWV 218 (541)
T ss_pred EEE
Confidence 774
No 227
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.91 E-value=6.2e-08 Score=113.82 Aligned_cols=275 Identities=12% Similarity=0.088 Sum_probs=176.9
Q ss_pred CCCCcEEEEEEe--CCEEEEEECCCcEEEEECCCCCe-------------eEEEEeccCCCCEEEEEEcCCCCEEEEEeC
Q 001455 792 KCSGAVTALIYY--KGLLCSGFSDGSIKMWDIKKQSA-------------MLVWDVKEHRKAVTSFSLFEPGESLLSGSA 856 (1074)
Q Consensus 792 gH~~~VtsLafS--~~~LaSGs~DGtVrIWDl~t~~~-------------~~i~tl~gH~~~VtsLafSpdg~~LaSGS~ 856 (1074)
..+....|+.|+ .+++|.||.||.++|-.+.+... ..-+++.||.+.|.-+.|+.+.+.|-|...
T Consensus 12 PnnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt 91 (1189)
T KOG2041|consen 12 PNNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDT 91 (1189)
T ss_pred CCCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCC
Confidence 346678899999 78999999999999998765321 123467899999999999999999999999
Q ss_pred CCeEEEEEccCCceEEEEEe-ccCCCeEE--EccCCCeEEEEecCCeEEEEeCCCceeee--ecCCCeEEEEEe-CCE-E
Q 001455 857 DKTIGVWQMVQRKLELIEVI-ATKEPIRK--LDTYGKTIFASTQGHRMKVIDSSRTLKDI--YRSKGIKSMSVV-QGK-I 929 (1074)
Q Consensus 857 DGtIrIWDl~tg~~~~~~~~-~h~~~V~s--~s~dg~~L~sgS~DgtI~VWDl~~~l~~l--~~~~~V~sLa~s-dgk-L 929 (1074)
+|.|.||-+-.|........ ..++.|.+ |..+|..++.+-.||.|.|=.+++....- ........+.|+ |.+ +
T Consensus 92 ~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~ws~D~~~~ 171 (1189)
T KOG2041|consen 92 SGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLWSEDLEQA 171 (1189)
T ss_pred CceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchheccceeecccHHHH
Confidence 99999999887764221112 23344444 56788999999999988877665322111 112223456676 555 5
Q ss_pred EEEECCCcEEEEEccCCceeeec-----cccccccCCCCCeEEEEEc--------CCceEEEEEecCCCeEEEEECCCCC
Q 001455 930 YIGCMDSSIQELAVSNNVEREIK-----APFKSWRLQSKPINSLVVY--------KDWLYSASSSVEGSNIKEWRRHRKP 996 (1074)
Q Consensus 930 laGs~DgsI~IwDl~tg~~~~i~-----~~~r~~~~h~~~I~sL~~s--------pd~i~las~S~dDgtI~IWDl~t~~ 996 (1074)
+.+-.+|.+++||...+-..... .....+...+..|..+.+. |+...++.+- +.|.+.+....+.+
T Consensus 172 Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy-~nGr~QiMR~eND~ 250 (1189)
T KOG2041|consen 172 LFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCY-ANGRMQIMRSENDP 250 (1189)
T ss_pred HhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEE-cCceehhhhhcCCC
Confidence 56777899999998764321110 0001111112234444443 3433333332 56677766543332
Q ss_pred eEEEccCCCCCeEEEEEecCCCEEEEEECC---------CcEEEEECCCCcEEEEEeCCCC-eEEEEEcCC--EEEEEEC
Q 001455 997 QISIAPEKGTTIQAMAVVEDFIYLNYNSSA---------SSLQIWLRGTQQKVGRISAGSK-ITSLLTAND--IVLCGTE 1064 (1074)
Q Consensus 997 ~i~~l~gH~~~VtsLafSPDG~~LaSGS~D---------GtIrIWDl~tg~~l~tL~~hs~-VtsLa~dg~--~LaSGs~ 1064 (1074)
....+ ..+-.|....|+++|.+|+.+|.| +.|.+|. .-|+.+.+++.++. |++++|.|. .++. ..
T Consensus 251 ~Pvv~-dtgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys-p~G~i~gtlkvpg~~It~lsWEg~gLriA~-Av 327 (1189)
T KOG2041|consen 251 EPVVV-DTGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS-PYGHIVGTLKVPGSCITGLSWEGTGLRIAI-AV 327 (1189)
T ss_pred CCeEE-ecccEeecceecCCCcEEEEccCcccccCccccceEEEec-cchhheEEEecCCceeeeeEEcCCceEEEE-Ee
Confidence 21112 233568899999999999998865 2444443 45677889988765 999999865 3333 34
Q ss_pred CCcEEE
Q 001455 1065 TGLIKG 1070 (1074)
Q Consensus 1065 DG~IrI 1070 (1074)
|+.|++
T Consensus 328 dsfiyf 333 (1189)
T KOG2041|consen 328 DSFIYF 333 (1189)
T ss_pred cceEEE
Confidence 666655
No 228
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.90 E-value=7.9e-07 Score=103.47 Aligned_cols=254 Identities=15% Similarity=0.125 Sum_probs=158.6
Q ss_pred EEeCCEEEEEECCCcEEEEECCCCCeeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEccCCceEEEEEeccCC
Q 001455 801 IYYKGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATKE 880 (1074)
Q Consensus 801 afS~~~LaSGs~DGtVrIWDl~t~~~~~i~tl~gH~~~VtsLafSpdg~~LaSGS~DGtIrIWDl~tg~~~~~~~~~h~~ 880 (1074)
...++.++.++.||.+..+|..+++. +..... .+.+.+.-.. .+..++.++.+|.+..||..+|+...........
T Consensus 102 ~v~~~~v~v~~~~g~l~ald~~tG~~--~W~~~~-~~~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~ 177 (377)
T TIGR03300 102 GADGGLVFVGTEKGEVIALDAEDGKE--LWRAKL-SSEVLSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPA 177 (377)
T ss_pred EEcCCEEEEEcCCCEEEEEECCCCcE--eeeecc-CceeecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCc
Confidence 34477889999999999999988864 333322 1222221111 3456777888999999999999865443221110
Q ss_pred C-e---EEEccCCCeEEEEecCCeEEEEeCC-Cceeeeec---C---CC------e-EEEEEeCCEEEEEECCCcEEEEE
Q 001455 881 P-I---RKLDTYGKTIFASTQGHRMKVIDSS-RTLKDIYR---S---KG------I-KSMSVVQGKIYIGCMDSSIQELA 942 (1074)
Q Consensus 881 ~-V---~s~s~dg~~L~sgS~DgtI~VWDl~-~~l~~l~~---~---~~------V-~sLa~sdgkLlaGs~DgsI~IwD 942 (1074)
. . .+....+..++.+..++.+..+|.. +...-... . .. + .+..+.++.+++++.+|.++.||
T Consensus 178 ~~~~~~~sp~~~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d 257 (377)
T TIGR03300 178 LTLRGSASPVIADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALD 257 (377)
T ss_pred eeecCCCCCEEECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEE
Confidence 0 0 0001123567788888999999975 22211100 0 00 1 11223477888999999999999
Q ss_pred ccCCceeeeccccccccCCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEccCCC-CCeEEEEEecCCCEEE
Q 001455 943 VSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKG-TTIQAMAVVEDFIYLN 1021 (1074)
Q Consensus 943 l~tg~~~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S~dDgtI~IWDl~t~~~i~~l~gH~-~~VtsLafSPDG~~La 1021 (1074)
..+|+..-... ...........+.+++. + .+|.+..+|..+++.+-...... ....+... .+..++
T Consensus 258 ~~tG~~~W~~~--------~~~~~~p~~~~~~vyv~--~-~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~ 324 (377)
T TIGR03300 258 LRSGRVLWKRD--------ASSYQGPAVDDNRLYVT--D-ADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLV 324 (377)
T ss_pred CCCCcEEEeec--------cCCccCceEeCCEEEEE--C-CCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEE
Confidence 99886543221 11112223334444433 2 57899999998887654442211 11222222 467889
Q ss_pred EEECCCcEEEEECCCCcEEEEEeCCC-CeEE-EEEcCCEEEEEECCCcEEEE
Q 001455 1022 YNSSASSLQIWLRGTQQKVGRISAGS-KITS-LLTANDIVLCGTETGLIKGW 1071 (1074)
Q Consensus 1022 SGS~DGtIrIWDl~tg~~l~tL~~hs-~Vts-La~dg~~LaSGs~DG~IrIW 1071 (1074)
+++.+|.|++||..+|+.+.+++.++ .+.. -...++.|+.++.||.|+.|
T Consensus 325 ~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~~~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 325 VGDFEGYLHWLSREDGSFVARLKTDGSGIASPPVVVGDGLLVQTRDGDLYAF 376 (377)
T ss_pred EEeCCCEEEEEECCCCCEEEEEEcCCCccccCCEEECCEEEEEeCCceEEEe
Confidence 99999999999999999999998765 3433 44556679999999999876
No 229
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=98.89 E-value=1.9e-08 Score=115.64 Aligned_cols=171 Identities=15% Similarity=0.217 Sum_probs=115.1
Q ss_pred EEEeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEccCCceEEEEEeccCCCeEE--EccC--CCeEEEEecCCeEEEE
Q 001455 829 VWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATKEPIRK--LDTY--GKTIFASTQGHRMKVI 904 (1074)
Q Consensus 829 i~tl~gH~~~VtsLafSpdg~~LaSGS~DGtIrIWDl~tg~~~~~~~~~h~~~V~s--~s~d--g~~L~sgS~DgtI~VW 904 (1074)
..++.||++.|+|+.|+.+|.+|+|||.|-.+.|||.-..+.......+|...|.+ |-|. ...+++|..|..|+++
T Consensus 43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lf 122 (758)
T KOG1310|consen 43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLF 122 (758)
T ss_pred hhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEE
Confidence 35678999999999999999999999999999999998777666666667666655 2222 2345555555555555
Q ss_pred eCCCceeeeecCCCeEEEEEeCCEEEEEECCCcEEEEEccCCceeeeccccccccCCCCCeEEEEEcCCceE-EEEEecC
Q 001455 905 DSSRTLKDIYRSKGIKSMSVVQGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLY-SASSSVE 983 (1074)
Q Consensus 905 Dl~~~l~~l~~~~~V~sLa~sdgkLlaGs~DgsI~IwDl~tg~~~~i~~~~r~~~~h~~~I~sL~~spd~i~-las~S~d 983 (1074)
|+..... .+.......+.+.|..|...|..++..|++.. +.+.+ +
T Consensus 123 dl~~~~~---------------------------------~~~d~~~~~~~~~~~cht~rVKria~~p~~Phtfwsas-E 168 (758)
T KOG1310|consen 123 DLDSSKE---------------------------------GGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSAS-E 168 (758)
T ss_pred ecccccc---------------------------------cccccCccchhhhhhhhhhhhhheecCCCCCceEEEec-C
Confidence 5531100 01111122334566777778888888888743 34444 8
Q ss_pred CCeEEEEECCCCCeEE----------EccCCCCCeEEEEEec-CCCEEEEEECCCcEEEEE
Q 001455 984 GSNIKEWRRHRKPQIS----------IAPEKGTTIQAMAVVE-DFIYLNYNSSASSLQIWL 1033 (1074)
Q Consensus 984 DgtI~IWDl~t~~~i~----------~l~gH~~~VtsLafSP-DG~~LaSGS~DGtIrIWD 1033 (1074)
||+|+-+|++...... .+.+.--...++..+| +..+|+.|+.|-..++||
T Consensus 169 DGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD 229 (758)
T KOG1310|consen 169 DGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYD 229 (758)
T ss_pred CcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhh
Confidence 9999999986532111 1111112467888898 556899999999999999
No 230
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.89 E-value=5.1e-07 Score=106.15 Aligned_cols=207 Identities=11% Similarity=0.030 Sum_probs=125.5
Q ss_pred CCcEEEEECCCCCeeEEEEeccCCCCEEEEEEcCCCCEEEEEeCC---CeEEEEEccCCceEEEEEeccCCCeEEEccCC
Q 001455 813 DGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSAD---KTIGVWQMVQRKLELIEVIATKEPIRKLDTYG 889 (1074)
Q Consensus 813 DGtVrIWDl~t~~~~~i~tl~gH~~~VtsLafSpdg~~LaSGS~D---GtIrIWDl~tg~~~~~~~~~h~~~V~s~s~dg 889 (1074)
...|.++|..+... ..+..+...+.+.+|+|+|++|+.++.+ ..|++||+.+++...............|++++
T Consensus 169 ~~~l~~~d~~g~~~---~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg 245 (417)
T TIGR02800 169 RYELQVADYDGANP---QTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDG 245 (417)
T ss_pred cceEEEEcCCCCCC---EEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCC
Confidence 34677888865543 4455677789999999999998876644 47999999887643322111111112456666
Q ss_pred CeEEEE-ecCCeEEEEeCCCceeeeecCCCeEEEEEeCCEEEEEECCCcEEEEEccCCceeeeccccccccCCCCCeEEE
Q 001455 890 KTIFAS-TQGHRMKVIDSSRTLKDIYRSKGIKSMSVVQGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSL 968 (1074)
Q Consensus 890 ~~L~sg-S~DgtI~VWDl~~~l~~l~~~~~V~sLa~sdgkLlaGs~DgsI~IwDl~tg~~~~i~~~~r~~~~h~~~I~sL 968 (1074)
+.++.. +.++ +..|++||+.++....+ ..+.......
T Consensus 246 ~~l~~~~~~~~-----------------------------------~~~i~~~d~~~~~~~~l-------~~~~~~~~~~ 283 (417)
T TIGR02800 246 SKLAVSLSKDG-----------------------------------NPDIYVMDLDGKQLTRL-------TNGPGIDTEP 283 (417)
T ss_pred CEEEEEECCCC-----------------------------------CccEEEEECCCCCEEEC-------CCCCCCCCCE
Confidence 655433 2221 22455666655433222 1112223345
Q ss_pred EEcCCceEEEEEecCCC--eEEEEECCCCCeEEEccCCCCCeEEEEEecCCCEEEEEECCC---cEEEEECCCCcEEEEE
Q 001455 969 VVYKDWLYSASSSVEGS--NIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSAS---SLQIWLRGTQQKVGRI 1043 (1074)
Q Consensus 969 ~~spd~i~las~S~dDg--tI~IWDl~t~~~i~~l~gH~~~VtsLafSPDG~~LaSGS~DG---tIrIWDl~tg~~l~tL 1043 (1074)
.+++++..++..+..++ .|.++|..++... .+..+...+....|+|||++++.++.++ .|.+||+.++... .+
T Consensus 284 ~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~-~l 361 (417)
T TIGR02800 284 SWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER-VL 361 (417)
T ss_pred EECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE-Ec
Confidence 77888877665543333 5777888777643 3444556677889999999999988776 7899998876543 33
Q ss_pred eCCCCeE--EEEEcCCEEEEEECCC
Q 001455 1044 SAGSKIT--SLLTANDIVLCGTETG 1066 (1074)
Q Consensus 1044 ~~hs~Vt--sLa~dg~~LaSGs~DG 1066 (1074)
..+.... +++++|++|+.++.++
T Consensus 362 ~~~~~~~~p~~spdg~~l~~~~~~~ 386 (417)
T TIGR02800 362 TDTGLDESPSFAPNGRMILYATTRG 386 (417)
T ss_pred cCCCCCCCceECCCCCEEEEEEeCC
Confidence 3222222 3556777777666654
No 231
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.89 E-value=3.1e-07 Score=109.22 Aligned_cols=204 Identities=13% Similarity=0.038 Sum_probs=126.3
Q ss_pred CeEEEEEccCCceEEEEEeccCCCeE--EEccCCCeEEEEecC---CeEEEEeCCC-ceeeeec-CCCeEEEEEe-CCE-
Q 001455 858 KTIGVWQMVQRKLELIEVIATKEPIR--KLDTYGKTIFASTQG---HRMKVIDSSR-TLKDIYR-SKGIKSMSVV-QGK- 928 (1074)
Q Consensus 858 GtIrIWDl~tg~~~~~~~~~h~~~V~--s~s~dg~~L~sgS~D---gtI~VWDl~~-~l~~l~~-~~~V~sLa~s-dgk- 928 (1074)
.+|.+||...+... ....+...+. .|+|+|+.++.++.+ ..|++||+.. ....+.. ........|+ +|+
T Consensus 184 ~~l~i~D~~g~~~~--~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~ 261 (433)
T PRK04922 184 YALQVADSDGYNPQ--TILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSPDGRR 261 (433)
T ss_pred EEEEEECCCCCCce--EeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECCCCCE
Confidence 46889998655432 2233444554 478999998888743 4799999873 3333332 2234467786 775
Q ss_pred EE-EEECCC--cEEEEEccCCceeeeccccccccCCCCCeEEEEEcCCceEEEEEecCCCe--EEEEECCCCCeEEEccC
Q 001455 929 IY-IGCMDS--SIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSN--IKEWRRHRKPQISIAPE 1003 (1074)
Q Consensus 929 Ll-aGs~Dg--sI~IwDl~tg~~~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S~dDgt--I~IWDl~t~~~i~~l~g 1003 (1074)
++ +.+.+| .|++||+.++....+ ..+........|+|++.+++..+..+|. |.++|..++...+. ..
T Consensus 262 l~~~~s~~g~~~Iy~~d~~~g~~~~l-------t~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~l-t~ 333 (433)
T PRK04922 262 LALTLSRDGNPEIYVMDLGSRQLTRL-------TNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERL-TF 333 (433)
T ss_pred EEEEEeCCCCceEEEEECCCCCeEEC-------ccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-ec
Confidence 43 345555 599999988764332 2223344567899999887766534444 66667766664332 22
Q ss_pred CCCCeEEEEEecCCCEEEEEECCC---cEEEEECCCCcEEEEEeCCCCeE--EEEEcCCEEEEEECC-C--cEEEEe
Q 001455 1004 KGTTIQAMAVVEDFIYLNYNSSAS---SLQIWLRGTQQKVGRISAGSKIT--SLLTANDIVLCGTET-G--LIKGWI 1072 (1074)
Q Consensus 1004 H~~~VtsLafSPDG~~LaSGS~DG---tIrIWDl~tg~~l~tL~~hs~Vt--sLa~dg~~LaSGs~D-G--~IrIWd 1072 (1074)
+.......+|+|||++|+..+.++ .|.+||+.+++.. .+..+.... +++++|++++..+.+ | .|.+|+
T Consensus 334 ~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~ 409 (433)
T PRK04922 334 QGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLTPGSLDESPSFAPNGSMVLYATREGGRGVLAAVS 409 (433)
T ss_pred CCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECCCCCCCCCceECCCCCEEEEEEecCCceEEEEEE
Confidence 334455789999999998766443 6999999888764 443322222 345567776655543 3 455554
No 232
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=98.86 E-value=4.7e-07 Score=100.40 Aligned_cols=238 Identities=16% Similarity=0.150 Sum_probs=148.6
Q ss_pred CCCCcEEEEEEe---CCEEEEEECCCcEEEEECCCCCe------------eEEEEeccCCCCEEEEEEcCCCCEEEEEeC
Q 001455 792 KCSGAVTALIYY---KGLLCSGFSDGSIKMWDIKKQSA------------MLVWDVKEHRKAVTSFSLFEPGESLLSGSA 856 (1074)
Q Consensus 792 gH~~~VtsLafS---~~~LaSGs~DGtVrIWDl~t~~~------------~~i~tl~gH~~~VtsLafSpdg~~LaSGS~ 856 (1074)
.-+..|+|++|. ...|+.|+..| |.||..+..-. ..+..-.|| .+|+++.|.+||..+++++.
T Consensus 138 ~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~ 215 (445)
T KOG2139|consen 138 VSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASF 215 (445)
T ss_pred hhhcceeEEEeccCCcceeeeeecce-eEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeeccc
Confidence 447889999998 33577777655 88997653110 012223456 68999999999999998875
Q ss_pred -CCeEEEEEccCCceEEEEEeccCC-CeEEEccCCCeEEEEecCCeEEEEeCCC---ceeeeecCCCeEEEEEe-CCE--
Q 001455 857 -DKTIGVWQMVQRKLELIEVIATKE-PIRKLDTYGKTIFASTQGHRMKVIDSSR---TLKDIYRSKGIKSMSVV-QGK-- 928 (1074)
Q Consensus 857 -DGtIrIWDl~tg~~~~~~~~~h~~-~V~s~s~dg~~L~sgS~DgtI~VWDl~~---~l~~l~~~~~V~sLa~s-dgk-- 928 (1074)
|..|.|||..+|........+..+ ....++|+++++++++.|+..++|+..+ ..+-....+.|..-.|+ .|.
T Consensus 216 gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfL 295 (445)
T KOG2139|consen 216 GSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFL 295 (445)
T ss_pred CcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEE
Confidence 678999999998765544222222 2456899999999999999999997652 33444456688888886 666
Q ss_pred EEEEECCCcEEEEEccCCcee----------eeccccc----cccC----CCCCeEEEEEcCCceEEEEEecCC------
Q 001455 929 IYIGCMDSSIQELAVSNNVER----------EIKAPFK----SWRL----QSKPINSLVVYKDWLYSASSSVEG------ 984 (1074)
Q Consensus 929 LlaGs~DgsI~IwDl~tg~~~----------~i~~~~r----~~~~----h~~~I~sL~~spd~i~las~S~dD------ 984 (1074)
+++.+... ++|.+...... ....+.. .... -...+.++++.|.|.+++..-...
T Consensus 296 Lf~~sgsp--~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~ 373 (445)
T KOG2139|consen 296 LFACSGSP--RLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLC 373 (445)
T ss_pred EEEEcCCc--eEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhh
Confidence 33333333 33433221110 0000000 0001 156788999999999988764221
Q ss_pred -CeEEEEECCCCCeEEEcc-C--CCCCeEEEEEec---CCCEEEEEECCCcEEEEE
Q 001455 985 -SNIKEWRRHRKPQISIAP-E--KGTTIQAMAVVE---DFIYLNYNSSASSLQIWL 1033 (1074)
Q Consensus 985 -gtI~IWDl~t~~~i~~l~-g--H~~~VtsLafSP---DG~~LaSGS~DGtIrIWD 1033 (1074)
..|.+||......+.... | .+.....+.|+| +|.+|..+-..|.+.-|.
T Consensus 374 k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~yp 429 (445)
T KOG2139|consen 374 KLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYP 429 (445)
T ss_pred hhhhhhhcccccCceEEEecccccCCCCceEEeeecccCCcEEEEEeccCceEeee
Confidence 246777766554443221 1 111244566665 677777777777777665
No 233
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=98.85 E-value=8.7e-08 Score=106.08 Aligned_cols=197 Identities=12% Similarity=0.108 Sum_probs=126.2
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCeEEEEEccCCceEEEEEeccCCCeEEE--ccCCCeEEEEecCCeEEEEeCCCceeeee
Q 001455 837 KAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATKEPIRKL--DTYGKTIFASTQGHRMKVIDSSRTLKDIY 914 (1074)
Q Consensus 837 ~~VtsLafSpdg~~LaSGS~DGtIrIWDl~tg~~~~~~~~~h~~~V~s~--s~dg~~L~sgS~DgtI~VWDl~~~l~~l~ 914 (1074)
-.+..++|++.-..++++..|-+|++||-.. ++...........|+++ .|.+...++.+.-+.|.+|..+.....
T Consensus 99 ~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~gIciW~~s~tln~-- 175 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAGICIWSDSRTLNA-- 175 (445)
T ss_pred cceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecceeEEEEcCccccc--
Confidence 3467789988666689999999999999765 33333333333445543 344443333333344666765421110
Q ss_pred cCCCeEEEEEeCCEEEEEECCCcEEEEEccCCceeeeccccccccCCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCC
Q 001455 915 RSKGIKSMSVVQGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHR 994 (1074)
Q Consensus 915 ~~~~V~sLa~sdgkLlaGs~DgsI~IwDl~tg~~~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S~dDgtI~IWDl~t 994 (1074)
++...+...+...+. ...+ ..+|+++.+.+|+..+++.+..|..|.|||.++
T Consensus 176 ------------~r~~~~~s~~~~qvl---------------~~pg-h~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdt 227 (445)
T KOG2139|consen 176 ------------NRNIRMMSTHHLQVL---------------QDPG-HNPVTSMQWNEDGTILVTASFGSSSIMIWDPDT 227 (445)
T ss_pred ------------ccccccccccchhhe---------------eCCC-CceeeEEEEcCCCCEEeecccCcceEEEEcCCC
Confidence 000000011111110 1122 379999999999999999999999999999999
Q ss_pred CCeEEEccCCCCCeEEEEEecCCCEEEEEECCCcEEEEE-CCCCcEEEEEeCCCCeEEEEEc--CC-EEEEEEC
Q 001455 995 KPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWL-RGTQQKVGRISAGSKITSLLTA--ND-IVLCGTE 1064 (1074)
Q Consensus 995 ~~~i~~l~gH~~~VtsLafSPDG~~LaSGS~DGtIrIWD-l~tg~~l~tL~~hs~VtsLa~d--g~-~LaSGs~ 1064 (1074)
+..+....-..+.++-+.|||||.++.++.-|+..++|+ .++.....-.-+.+.|+.-.|+ |+ .|++.+.
T Consensus 228 g~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sg 301 (445)
T KOG2139|consen 228 GQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSG 301 (445)
T ss_pred CCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcC
Confidence 987766644556788999999999999999999999995 4555555555555667765555 55 3334433
No 234
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.84 E-value=8.8e-06 Score=94.03 Aligned_cols=259 Identities=12% Similarity=0.150 Sum_probs=165.0
Q ss_pred CcEEEEEEe--CCEEEEEEC----CCcEEEEECCC--CCeeEEEEeccCCCCEEEEEEcCCCCEEEEEe-CCCeEEEEEc
Q 001455 795 GAVTALIYY--KGLLCSGFS----DGSIKMWDIKK--QSAMLVWDVKEHRKAVTSFSLFEPGESLLSGS-ADKTIGVWQM 865 (1074)
Q Consensus 795 ~~VtsLafS--~~~LaSGs~----DGtVrIWDl~t--~~~~~i~tl~gH~~~VtsLafSpdg~~LaSGS-~DGtIrIWDl 865 (1074)
.....++++ +++|.+... +|.|..|++.. ++...+............++++|++++|+++. .+|+|.++++
T Consensus 37 ~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l 116 (345)
T PF10282_consen 37 ENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPL 116 (345)
T ss_dssp SSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred CCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEc
Confidence 344567776 557777766 57999998876 44445555543445567899999999988776 5899999999
Q ss_pred cC-CceEEEE-Eecc-----------CCCeE--EEccCCCeEEEEec-CCeEEEEeCCCc---ee-----eeecCCCeEE
Q 001455 866 VQ-RKLELIE-VIAT-----------KEPIR--KLDTYGKTIFASTQ-GHRMKVIDSSRT---LK-----DIYRSKGIKS 921 (1074)
Q Consensus 866 ~t-g~~~~~~-~~~h-----------~~~V~--s~s~dg~~L~sgS~-DgtI~VWDl~~~---l~-----~l~~~~~V~s 921 (1074)
.. |...... ...+ ..... .++|+++++++... ...|.+|+++.. +. ......+.+.
T Consensus 117 ~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh 196 (345)
T PF10282_consen 117 DDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRH 196 (345)
T ss_dssp CTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEE
T ss_pred cCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcE
Confidence 87 4433221 1111 11222 36899998888764 348999998732 21 2233567889
Q ss_pred EEEe-CCE-EEE-EECCCcEEEEEcc--CCceeeeccccccc--cC-CCCCeEEEEEcCCceEEEEEecCCCeEEEEECC
Q 001455 922 MSVV-QGK-IYI-GCMDSSIQELAVS--NNVEREIKAPFKSW--RL-QSKPINSLVVYKDWLYSASSSVEGSNIKEWRRH 993 (1074)
Q Consensus 922 La~s-dgk-Lla-Gs~DgsI~IwDl~--tg~~~~i~~~~r~~--~~-h~~~I~sL~~spd~i~las~S~dDgtI~IWDl~ 993 (1074)
+.|+ +++ ++. .-.++.|.+|++. ++........ ... .. .......+.++|++.++.......++|.+|+++
T Consensus 197 ~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d 275 (345)
T PF10282_consen 197 LAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTI-STLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLD 275 (345)
T ss_dssp EEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEE-ESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEEC
T ss_pred EEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEe-eeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEe
Confidence 9997 665 444 5568889999998 4433222110 111 11 123678899999999998888778899999983
Q ss_pred --CCCe--EEEccCCCCCeEEEEEecCCCEEEEEE-CCCcEEEEEC--CCCcEEEEEe--CCCCeEEEEE
Q 001455 994 --RKPQ--ISIAPEKGTTIQAMAVVEDFIYLNYNS-SASSLQIWLR--GTQQKVGRIS--AGSKITSLLT 1054 (1074)
Q Consensus 994 --t~~~--i~~l~gH~~~VtsLafSPDG~~LaSGS-~DGtIrIWDl--~tg~~l~tL~--~hs~VtsLa~ 1054 (1074)
++.+ +..........+.++++|+|++|+++. .++.|.+|++ ++|.....-. .-....|+.|
T Consensus 276 ~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ci~f 345 (345)
T PF10282_consen 276 PATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPVCIVF 345 (345)
T ss_dssp TTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEEESSSEEEEEE
T ss_pred cCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEecccccCCCCEEEeC
Confidence 3443 333333455689999999999999887 6678999975 5666543322 1133555554
No 235
>PRK03629 tolB translocation protein TolB; Provisional
Probab=98.83 E-value=5.3e-07 Score=107.20 Aligned_cols=212 Identities=8% Similarity=0.020 Sum_probs=133.7
Q ss_pred CCCCcEEEEEEe-C-CEEEEEE---CCCcEEEEECCCCCeeEEEEeccCCCCEEEEEEcCCCCEEEEE-eCCC--eEEEE
Q 001455 792 KCSGAVTALIYY-K-GLLCSGF---SDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSG-SADK--TIGVW 863 (1074)
Q Consensus 792 gH~~~VtsLafS-~-~~LaSGs---~DGtVrIWDl~t~~~~~i~tl~gH~~~VtsLafSpdg~~LaSG-S~DG--tIrIW 863 (1074)
.+.+.+.+.+|+ + ..|+..+ .+..|.+||+.+++...+..+.+| +....|+|||+.|+.. +.+| .|.+|
T Consensus 196 ~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~---~~~~~~SPDG~~La~~~~~~g~~~I~~~ 272 (429)
T PRK03629 196 RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRH---NGAPAFSPDGSKLAFALSKTGSLNLYVM 272 (429)
T ss_pred cCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCC---cCCeEECCCCCEEEEEEcCCCCcEEEEE
Confidence 346789999999 4 4566443 345799999998865444444444 4568999999987754 4455 58899
Q ss_pred EccCCceEEEEEeccCCCeEEEccCCCeEEEEecC-C--eEEEEeCCC-ceeeeec-CCCeEEEEEe-CCE-EEEEEC-C
Q 001455 864 QMVQRKLELIEVIATKEPIRKLDTYGKTIFASTQG-H--RMKVIDSSR-TLKDIYR-SKGIKSMSVV-QGK-IYIGCM-D 935 (1074)
Q Consensus 864 Dl~tg~~~~~~~~~h~~~V~s~s~dg~~L~sgS~D-g--tI~VWDl~~-~l~~l~~-~~~V~sLa~s-dgk-LlaGs~-D 935 (1074)
|+.+++............-..|+|+|+.++.++.+ + .|+++|+.. ....+.. ........|+ +|+ ++..+. +
T Consensus 273 d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~ 352 (429)
T PRK03629 273 DLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNG 352 (429)
T ss_pred ECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEEccC
Confidence 99888654322111112223589999988877654 4 455556653 3333332 3334567775 776 444332 2
Q ss_pred --CcEEEEEccCCceeeeccccccccCCCCCeEEEEEcCCceEEEEEecCCC--eEEEEECCCCCeEEEccCCCCCeEEE
Q 001455 936 --SSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGS--NIKEWRRHRKPQISIAPEKGTTIQAM 1011 (1074)
Q Consensus 936 --gsI~IwDl~tg~~~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S~dDg--tI~IWDl~t~~~i~~l~gH~~~VtsL 1011 (1074)
..|.+||+.++....+.. ........++||+..++..+.+++ .+.+++.+. ...+.+.+|.+.+...
T Consensus 353 g~~~I~~~dl~~g~~~~Lt~--------~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G-~~~~~l~~~~~~~~~p 423 (429)
T PRK03629 353 GQQHIAKQDLATGGVQVLTD--------TFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDG-RFKARLPATDGQVKFP 423 (429)
T ss_pred CCceEEEEECCCCCeEEeCC--------CCCCCCceECCCCCEEEEEEcCCCceEEEEEECCC-CCeEECccCCCCcCCc
Confidence 458889998876543321 112235678999998877764443 367777754 4456677788888889
Q ss_pred EEec
Q 001455 1012 AVVE 1015 (1074)
Q Consensus 1012 afSP 1015 (1074)
+|+|
T Consensus 424 ~Wsp 427 (429)
T PRK03629 424 AWSP 427 (429)
T ss_pred ccCC
Confidence 9987
No 236
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.81 E-value=1.6e-06 Score=102.79 Aligned_cols=229 Identities=10% Similarity=0.033 Sum_probs=138.6
Q ss_pred cEEEEECCCCCeeEEEEeccCCCCEEEEEEcCCCCEEEEEeCC---CeEEEEEccCCceEEEEEeccCCCeEEEccCCCe
Q 001455 815 SIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSAD---KTIGVWQMVQRKLELIEVIATKEPIRKLDTYGKT 891 (1074)
Q Consensus 815 tVrIWDl~t~~~~~i~tl~gH~~~VtsLafSpdg~~LaSGS~D---GtIrIWDl~tg~~~~~~~~~h~~~V~s~s~dg~~ 891 (1074)
.|.++|.++... ..+..+...+....|+|||+.|+..+.+ ..|.+||+.+++............-..|+|+|+.
T Consensus 180 ~l~~~d~~g~~~---~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~ 256 (430)
T PRK00178 180 TLQRSDYDGARA---VTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSK 256 (430)
T ss_pred EEEEECCCCCCc---eEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCE
Confidence 477888876543 4455677889999999999998766543 3689999998865432211111122468999998
Q ss_pred EEE-EecCC--eEEEEeCCC-ceeeeecCC-CeEEEEEe-CCE-EEEEE-CCC--cEEEEEccCCceeeeccccccccCC
Q 001455 892 IFA-STQGH--RMKVIDSSR-TLKDIYRSK-GIKSMSVV-QGK-IYIGC-MDS--SIQELAVSNNVEREIKAPFKSWRLQ 961 (1074)
Q Consensus 892 L~s-gS~Dg--tI~VWDl~~-~l~~l~~~~-~V~sLa~s-dgk-LlaGs-~Dg--sI~IwDl~tg~~~~i~~~~r~~~~h 961 (1074)
++. .+.++ .|++||+.. ....+.... ......|+ +|+ ++..+ .+| .|+++|+.+++...+. ..
T Consensus 257 la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt-------~~ 329 (430)
T PRK00178 257 LAFVLSKDGNPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVT-------FV 329 (430)
T ss_pred EEEEEccCCCceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee-------cC
Confidence 774 44444 688889873 333333322 34456676 665 54443 333 5777788776643321 11
Q ss_pred CCCeEEEEEcCCceEEEEEecCCC--eEEEEECCCCCeEEEccCCCCCeEEEEEecCCCEEEEEECC---CcEEEEECCC
Q 001455 962 SKPINSLVVYKDWLYSASSSVEGS--NIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSA---SSLQIWLRGT 1036 (1074)
Q Consensus 962 ~~~I~sL~~spd~i~las~S~dDg--tI~IWDl~t~~~i~~l~gH~~~VtsLafSPDG~~LaSGS~D---GtIrIWDl~t 1036 (1074)
........++|++.+++..+..++ .|.+||+.++........ .......|+|||++++..+.+ ..+.+++...
T Consensus 330 ~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~~--~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g 407 (430)
T PRK00178 330 GNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRILTDT--SLDESPSVAPNGTMLIYATRQQGRGVLMLVSING 407 (430)
T ss_pred CCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEEccCC--CCCCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence 222335678899888776553343 578899888765433222 223356899999999877643 3466667643
Q ss_pred CcEEEEEeCC-CCeEEEEEcC
Q 001455 1037 QQKVGRISAG-SKITSLLTAN 1056 (1074)
Q Consensus 1037 g~~l~tL~~h-s~VtsLa~dg 1056 (1074)
.....+..+ +.+...+|++
T Consensus 408 -~~~~~l~~~~g~~~~p~ws~ 427 (430)
T PRK00178 408 -RVRLPLPTAQGEVREPSWSP 427 (430)
T ss_pred -CceEECcCCCCCcCCCccCC
Confidence 333444433 3355555543
No 237
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=98.81 E-value=2.6e-07 Score=101.22 Aligned_cols=219 Identities=10% Similarity=0.035 Sum_probs=144.3
Q ss_pred ccccccccCCCcccceeeEEEEeecCCCCCcEEEEEEe--CCEEEEEECCCcEEEEEC-CCCCeeEEEEeccCCCCEEEE
Q 001455 766 HKAADYYLPNISRISCVHTQILEASHKCSGAVTALIYY--KGLLCSGFSDGSIKMWDI-KKQSAMLVWDVKEHRKAVTSF 842 (1074)
Q Consensus 766 ~k~~~~~~p~~~~~~~~~tl~le~~~gH~~~VtsLafS--~~~LaSGs~DGtVrIWDl-~t~~~~~i~tl~gH~~~VtsL 842 (1074)
+.+..|.......|...|++. .|...|++|+|+ .+.|++|+.|..-+||.. .+++..+...+..|..+++++
T Consensus 32 ~evhiy~~~~~~~w~~~htls-----~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V 106 (361)
T KOG1523|consen 32 HEVHIYSMLGADLWEPAHTLS-----EHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCV 106 (361)
T ss_pred ceEEEEEecCCCCceeceehh-----hhCcceeEEeecCCCCceeEccCCCCccccccCCCCeeccceeEEEeccceeeE
Confidence 344444444444577777766 899999999999 568999999999999998 777777777788999999999
Q ss_pred EEcCCCCEEEEEeCCCeEEEEEccCCceE---EEEEeccCCCeEEEccC--CCeEEEEecCCeEEEEeCC-CceeeeecC
Q 001455 843 SLFEPGESLLSGSADKTIGVWQMVQRKLE---LIEVIATKEPIRKLDTY--GKTIFASTQGHRMKVIDSS-RTLKDIYRS 916 (1074)
Q Consensus 843 afSpdg~~LaSGS~DGtIrIWDl~tg~~~---~~~~~~h~~~V~s~s~d--g~~L~sgS~DgtI~VWDl~-~~l~~l~~~ 916 (1074)
.|+|.++.+++||.-+.|.||-++..+-- .....++...|.++++| +-.+++|+.|+.++|+..- +.+..- ..
T Consensus 107 ~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdek-pa 185 (361)
T KOG1523|consen 107 KWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEK-PA 185 (361)
T ss_pred eecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccC-CC
Confidence 99999999999999999999987654321 11223456667776644 4477888888888888642 000000 00
Q ss_pred CCeEEEEEeCCEEEEEECCCcEEEEEccCCceeeeccccccccCCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCC
Q 001455 917 KGIKSMSVVQGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKP 996 (1074)
Q Consensus 917 ~~V~sLa~sdgkLlaGs~DgsI~IwDl~tg~~~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S~dDgtI~IWDl~t~~ 996 (1074)
.....-.++-|. .+..+...+..+..+.|+|.|..++=.+ .|.++.+-|.....
T Consensus 186 p~pWgsk~PFG~-------------------------lm~E~~~~ggwvh~v~fs~sG~~lawv~-Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 186 PTPWGSKMPFGQ-------------------------LMSEASSSGGWVHGVLFSPSGNRLAWVG-HDSTVSFVDAAGPS 239 (361)
T ss_pred CCCCccCCcHHH-------------------------HHHhhccCCCceeeeEeCCCCCEeeEec-CCCceEEeecCCCc
Confidence 000000001111 1122234477899999999988776444 67889888866553
Q ss_pred -eEEEccCCCCCeEEEEEecC
Q 001455 997 -QISIAPEKGTTIQAMAVVED 1016 (1074)
Q Consensus 997 -~i~~l~gH~~~VtsLafSPD 1016 (1074)
.+.......-+..++.|-.+
T Consensus 240 ~~v~~~~~~~lP~ls~~~ise 260 (361)
T KOG1523|consen 240 ERVQSVATAQLPLLSVSWISE 260 (361)
T ss_pred hhccchhhccCCceeeEeecC
Confidence 23333323356667666543
No 238
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.78 E-value=5.1e-08 Score=105.79 Aligned_cols=265 Identities=17% Similarity=0.213 Sum_probs=162.2
Q ss_pred CCCcEEEEEEe--CCEEEEEECCCcEEEEECCCCC---eeEEEEeccCC------------CCEEEEEEcCCCCE--EEE
Q 001455 793 CSGAVTALIYY--KGLLCSGFSDGSIKMWDIKKQS---AMLVWDVKEHR------------KAVTSFSLFEPGES--LLS 853 (1074)
Q Consensus 793 H~~~VtsLafS--~~~LaSGs~DGtVrIWDl~t~~---~~~i~tl~gH~------------~~VtsLafSpdg~~--LaS 853 (1074)
..+.|+++.|. |.|+++|...|.|.+|.-.... .+....+++|. ..|..+.|..++.. ++.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 35789999999 7799999999999999766543 22344566664 35788888766543 667
Q ss_pred EeCCCeEEEEEccCCceEEEEEe--------ccCCCeEE--------EccCCCeEEEEecCCeEEEEeCCCceeeeecCC
Q 001455 854 GSADKTIGVWQMVQRKLELIEVI--------ATKEPIRK--------LDTYGKTIFASTQGHRMKVIDSSRTLKDIYRSK 917 (1074)
Q Consensus 854 GS~DGtIrIWDl~tg~~~~~~~~--------~h~~~V~s--------~s~dg~~L~sgS~DgtI~VWDl~~~l~~l~~~~ 917 (1074)
.+.|++|++|.+........... +..+++++ ++.+..++ ++.. .++| .-.+.-
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~ii-aa~p---~rvy-------aNaH~y 173 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEII-AAKP---CRVY-------ANAHPY 173 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEE-Eecc---ceec-------ccccee
Confidence 78899999999876543221111 11222322 11111122 1111 0111 011223
Q ss_pred CeEEEEEe-CCEEEEEECCCcEEEEEccCCce----eeeccccccccCCCCCeEEEEEcCCceEEEEEecCCCeEEEEEC
Q 001455 918 GIKSMSVV-QGKIYIGCMDSSIQELAVSNNVE----REIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRR 992 (1074)
Q Consensus 918 ~V~sLa~s-dgkLlaGs~DgsI~IwDl~tg~~----~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S~dDgtI~IWDl 992 (1074)
.+.++++. |...+....|-.|.+|++.-... ..++ | ..+..-...|++..|||....++..+...|+|++-|+
T Consensus 174 hiNSiS~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiK-P-~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~Dl 251 (460)
T COG5170 174 HINSISFNSDKETLLSADDLRINLWNLEIIDGSFNIVDIK-P-HNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDL 251 (460)
T ss_pred EeeeeeecCchheeeeccceeeeeccccccCCceEEEecc-C-ccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhh
Confidence 47788886 66677777888899998864221 1111 1 1111113467888999986666666666899999998
Q ss_pred CCCCe----------------EEEccCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCC-CcEEEEEeCCC--------
Q 001455 993 HRKPQ----------------ISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGT-QQKVGRISAGS-------- 1047 (1074)
Q Consensus 993 ~t~~~----------------i~~l~gH~~~VtsLafSPDG~~LaSGS~DGtIrIWDl~t-g~~l~tL~~hs-------- 1047 (1074)
+...+ ...+.+-...|..+.|+++|+||++-+ --+|+|||.+. ..++.++..|.
T Consensus 252 Rq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRd-yltvkiwDvnm~k~pikTi~~h~~l~~~l~d 330 (460)
T COG5170 252 RQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRD-YLTVKIWDVNMAKNPIKTIPMHCDLMDELND 330 (460)
T ss_pred hhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEec-cceEEEEecccccCCceeechHHHHHHHHHh
Confidence 63221 111112234688899999999999976 46899999765 45688886551
Q ss_pred -----CeEE---EEEcCC--EEEEEECCCcEEEE
Q 001455 1048 -----KITS---LLTAND--IVLCGTETGLIKGW 1071 (1074)
Q Consensus 1048 -----~Vts---La~dg~--~LaSGs~DG~IrIW 1071 (1074)
.|.. +.|+|+ .+.+|+..+..-++
T Consensus 331 ~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiy 364 (460)
T COG5170 331 VYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIY 364 (460)
T ss_pred hhhccceeeeEEEEecCCcccccccccccceeee
Confidence 2333 455543 77777766554443
No 239
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=98.77 E-value=1.5e-07 Score=108.49 Aligned_cols=193 Identities=12% Similarity=0.130 Sum_probs=129.5
Q ss_pred EEEEEECCCcEEEEECCCCCeeEEEEec--cCCCCEEEEEEcCCCCE-EEEEeCCCeEEEEEccCCceEEEEEeccCCCe
Q 001455 806 LLCSGFSDGSIKMWDIKKQSAMLVWDVK--EHRKAVTSFSLFEPGES-LLSGSADKTIGVWQMVQRKLELIEVIATKEPI 882 (1074)
Q Consensus 806 ~LaSGs~DGtVrIWDl~t~~~~~i~tl~--gH~~~VtsLafSpdg~~-LaSGS~DGtIrIWDl~tg~~~~~~~~~h~~~V 882 (1074)
-+..|-.-|.|.+.|....+...+.... -.+..|+|+.|-|.++. ++.+-.+|.+.++|... ..+...+-
T Consensus 187 dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~-------~~~~t~p~ 259 (636)
T KOG2394|consen 187 DLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEI-------VCGATAPS 259 (636)
T ss_pred ceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccc-------cccCCCCc
Confidence 4778888888988887653221111111 12478999999997776 55667799999998721 11222222
Q ss_pred EEEccCCCeEEEEecCCeEEEEeCCCceeeeecCCCeEEEEEe-CCE-EEEEECCCcEEEEEccCCceeeeccccccccC
Q 001455 883 RKLDTYGKTIFASTQGHRMKVIDSSRTLKDIYRSKGIKSMSVV-QGK-IYIGCMDSSIQELAVSNNVEREIKAPFKSWRL 960 (1074)
Q Consensus 883 ~s~s~dg~~L~sgS~DgtI~VWDl~~~l~~l~~~~~V~sLa~s-dgk-LlaGs~DgsI~IwDl~tg~~~~i~~~~r~~~~ 960 (1074)
...-..+..+.....-+.. +-+...+.......|...+|+ ||+ +++.+.||.++|||..+.+...+ +..
T Consensus 260 ~~~~k~~~~f~i~t~ksk~---~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~------mkS 330 (636)
T KOG2394|consen 260 YQALKDGDQFAILTSKSKK---TRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGV------MKS 330 (636)
T ss_pred ccccCCCCeeEEeeeeccc---cCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHH------HHh
Confidence 3333444444433221100 001111111234478888897 888 55699999999999988443222 123
Q ss_pred CCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEccCCCCCeEEEEEec
Q 001455 961 QSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVE 1015 (1074)
Q Consensus 961 h~~~I~sL~~spd~i~las~S~dDgtI~IWDl~t~~~i~~l~gH~~~VtsLafSP 1015 (1074)
.-....|++|+||+.|+++++ +|..|.+|.+..++.+..-.+|..+|..++|+|
T Consensus 331 YFGGLLCvcWSPDGKyIvtGG-EDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 331 YFGGLLCVCWSPDGKYIVTGG-EDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred hccceEEEEEcCCccEEEecC-CcceEEEEEeccceEEEeccccccceeeEeecc
Confidence 356789999999999999988 777999999999999999999999999999996
No 240
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.77 E-value=4.6e-06 Score=97.12 Aligned_cols=260 Identities=11% Similarity=0.069 Sum_probs=160.5
Q ss_pred EEEeCCEEEEEECCCcEEEEECCCCCeeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEccCCceEEEEEeccC
Q 001455 800 LIYYKGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATK 879 (1074)
Q Consensus 800 LafS~~~LaSGs~DGtVrIWDl~t~~~~~i~tl~gH~~~VtsLafSpdg~~LaSGS~DGtIrIWDl~tg~~~~~~~~~h~ 879 (1074)
....++.++.++.+|.|..+|..+++. +....-......... .++..++.++.||.+..+|..+|+....... .
T Consensus 61 p~v~~~~v~v~~~~g~v~a~d~~tG~~--~W~~~~~~~~~~~p~--v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~--~ 134 (377)
T TIGR03300 61 PAVAGGKVYAADADGTVVALDAETGKR--LWRVDLDERLSGGVG--ADGGLVFVGTEKGEVIALDAEDGKELWRAKL--S 134 (377)
T ss_pred eEEECCEEEEECCCCeEEEEEccCCcE--eeeecCCCCcccceE--EcCCEEEEEcCCCEEEEEECCCCcEeeeecc--C
Confidence 344588999999999999999988864 444432222112222 2567788899999999999999987554332 2
Q ss_pred CCeEE-EccCCCeEEEEecCCeEEEEeCCC-ceee-eecCCCe------EEEEEeCCEEEEEECCCcEEEEEccCCceee
Q 001455 880 EPIRK-LDTYGKTIFASTQGHRMKVIDSSR-TLKD-IYRSKGI------KSMSVVQGKIYIGCMDSSIQELAVSNNVERE 950 (1074)
Q Consensus 880 ~~V~s-~s~dg~~L~sgS~DgtI~VWDl~~-~l~~-l~~~~~V------~sLa~sdgkLlaGs~DgsI~IwDl~tg~~~~ 950 (1074)
..+.+ ....+..++.++.++.+..||... ...- ....... .+..+.++.++.+..++.+..+|..+|+...
T Consensus 135 ~~~~~~p~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~~v~~~~~~g~v~ald~~tG~~~W 214 (377)
T TIGR03300 135 SEVLSPPLVANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIADGGVLVGFAGGKLVALDLQTGQPLW 214 (377)
T ss_pred ceeecCCEEECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEECCEEEEECCCCEEEEEEccCCCEee
Confidence 22222 122456788888899999999862 2211 1111111 1222346778888889999999999887543
Q ss_pred eccccccccCCC------CCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEccCCCCCeEEEEEecCCCEEEEEE
Q 001455 951 IKAPFKSWRLQS------KPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNS 1024 (1074)
Q Consensus 951 i~~~~r~~~~h~------~~I~sL~~spd~i~las~S~dDgtI~IWDl~t~~~i~~l~gH~~~VtsLafSPDG~~LaSGS 1024 (1074)
..... ...+.. ....+..++.+.+++. + .+|.+..||..+++.+-.... .. ..... .++..++.++
T Consensus 215 ~~~~~-~~~g~~~~~~~~~~~~~p~~~~~~vy~~--~-~~g~l~a~d~~tG~~~W~~~~-~~-~~~p~--~~~~~vyv~~ 286 (377)
T TIGR03300 215 EQRVA-LPKGRTELERLVDVDGDPVVDGGQVYAV--S-YQGRVAALDLRSGRVLWKRDA-SS-YQGPA--VDDNRLYVTD 286 (377)
T ss_pred eeccc-cCCCCCchhhhhccCCccEEECCEEEEE--E-cCCEEEEEECCCCcEEEeecc-CC-ccCce--EeCCEEEEEC
Confidence 21100 000000 0001112233333332 2 468899999998876554431 11 11122 2466788888
Q ss_pred CCCcEEEEECCCCcEEEEEeC-CCC-eEEEEEcCCEEEEEECCCcEEEEec
Q 001455 1025 SASSLQIWLRGTQQKVGRISA-GSK-ITSLLTANDIVLCGTETGLIKGWIP 1073 (1074)
Q Consensus 1025 ~DGtIrIWDl~tg~~l~tL~~-hs~-VtsLa~dg~~LaSGs~DG~IrIWdi 1073 (1074)
.||.++.+|..+|+.+..... .+. ..+....+..+++++.||.|++||.
T Consensus 287 ~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i~g~~l~~~~~~G~l~~~d~ 337 (377)
T TIGR03300 287 ADGVVVALDRRSGSELWKNDELKYRQLTAPAVVGGYLVVGDFEGYLHWLSR 337 (377)
T ss_pred CCCeEEEEECCCCcEEEccccccCCccccCEEECCEEEEEeCCCEEEEEEC
Confidence 899999999999998766632 222 3334456889999999999999985
No 241
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.76 E-value=3e-08 Score=125.93 Aligned_cols=206 Identities=15% Similarity=0.137 Sum_probs=143.1
Q ss_pred ECCCcEEEEECCCCCeeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEccCCceEEEEEeccCCCeEEEccCCC
Q 001455 811 FSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATKEPIRKLDTYGK 890 (1074)
Q Consensus 811 s~DGtVrIWDl~t~~~~~i~tl~gH~~~VtsLafSpdg~~LaSGS~DGtIrIWDl~tg~~~~~~~~~h~~~V~s~s~dg~ 890 (1074)
.-++.+.-|..+... ..++.|-..|.++.=+|...+-+||+.||.|++|....++............
T Consensus 2187 n~~~~~~tq~~~~~~----~~~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~--------- 2253 (2439)
T KOG1064|consen 2187 NLPWLGSTQTSRGAS----VMIKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSR--------- 2253 (2439)
T ss_pred cCCccccceecccce----eEeecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcch---------
Confidence 334555555555432 2234455778888889999999999999999999886655332222211222
Q ss_pred eEEEEecCCeEEEEeCCCceeeeecCCCeEEEEEe--CCEEEEEECCCcEEEEEccCCceeeeccccccccCCCCCeEEE
Q 001455 891 TIFASTQGHRMKVIDSSRTLKDIYRSKGIKSMSVV--QGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSL 968 (1074)
Q Consensus 891 ~L~sgS~DgtI~VWDl~~~l~~l~~~~~V~sLa~s--dgkLlaGs~DgsI~IwDl~tg~~~~i~~~~r~~~~h~~~I~sL 968 (1074)
|+.+.|. .+++-++..||.+.+|.... .+.-.|+.|....+.+
T Consensus 2254 ----------------------------vtr~~f~~qGnk~~i~d~dg~l~l~q~~p-------k~~~s~qchnk~~~Df 2298 (2439)
T KOG1064|consen 2254 ----------------------------VTRSRFNHQGNKFGIVDGDGDLSLWQASP-------KPYTSWQCHNKALSDF 2298 (2439)
T ss_pred ----------------------------hhhhhhcccCCceeeeccCCceeecccCC-------cceeccccCCccccce
Confidence 2233333 33344455566666666552 2224456667777777
Q ss_pred EEcCCceEEEEEecCCCeEEEEECCC--C-CeEEEccCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCcEEEEEeC
Q 001455 969 VVYKDWLYSASSSVEGSNIKEWRRHR--K-PQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISA 1045 (1074)
Q Consensus 969 ~~spd~i~las~S~dDgtI~IWDl~t--~-~~i~~l~gH~~~VtsLafSPDG~~LaSGS~DGtIrIWDl~tg~~l~tL~~ 1045 (1074)
.|-......+.-+++++.+.+||..- . .++. ..|.+.++++++-|..+.++|||.+|.|++||++..+.+++++.
T Consensus 2299 ~Fi~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~ 2376 (2439)
T KOG1064|consen 2299 RFIGSLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA 2376 (2439)
T ss_pred eeeehhhhccccCCCCCcccchhcccCcccceee--eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh
Confidence 77666655566667889999999532 2 2344 67999999999999999999999999999999999888888774
Q ss_pred CCCeEEEEEcCCEEEEEECCCcEEEEec
Q 001455 1046 GSKITSLLTANDIVLCGTETGLIKGWIP 1073 (1074)
Q Consensus 1046 hs~VtsLa~dg~~LaSGs~DG~IrIWdi 1073 (1074)
+. ...++++|+..|.|+||++
T Consensus 2377 ------~~-~~~~f~~~ss~g~ikIw~~ 2397 (2439)
T KOG1064|consen 2377 ------LD-TREYFVTGSSEGNIKIWRL 2397 (2439)
T ss_pred ------hh-hhheeeccCcccceEEEEc
Confidence 22 3559999999999999985
No 242
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.76 E-value=5.7e-07 Score=105.32 Aligned_cols=219 Identities=13% Similarity=0.162 Sum_probs=138.4
Q ss_pred CEEEEEECCCcEEEEECCCCCeeEEEEec---cCCCCEEEEEEc--------------------CCCCEEEEEeCCCeEE
Q 001455 805 GLLCSGFSDGSIKMWDIKKQSAMLVWDVK---EHRKAVTSFSLF--------------------EPGESLLSGSADKTIG 861 (1074)
Q Consensus 805 ~~LaSGs~DGtVrIWDl~t~~~~~i~tl~---gH~~~VtsLafS--------------------pdg~~LaSGS~DGtIr 861 (1074)
.++|....||.+||||...++. ...|. .-.+..++..|. .+...++-|...|.|.
T Consensus 6 ~~~A~~~~~g~l~iw~t~~~~~--~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~ 83 (541)
T KOG4547|consen 6 DYFALSTGDGRLRIWDTAKNQL--QQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVL 83 (541)
T ss_pred heEeecCCCCeEEEEEccCcee--eeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEE
Confidence 4899999999999999998754 23332 123444455553 1112244444455555
Q ss_pred EEEccCCceEEEEE-eccCCCeEEEccCCCeEEEEecCCeEEEEeCCCceeeeecCCCeEEEEEe--CCEEEEEECCCcE
Q 001455 862 VWQMVQRKLELIEV-IATKEPIRKLDTYGKTIFASTQGHRMKVIDSSRTLKDIYRSKGIKSMSVV--QGKIYIGCMDSSI 938 (1074)
Q Consensus 862 IWDl~tg~~~~~~~-~~h~~~V~s~s~dg~~L~sgS~DgtI~VWDl~~~l~~l~~~~~V~sLa~s--dgkLlaGs~DgsI 938 (1074)
+|++..|+...... ..|. +.|.++.+. -+-+++++.|+.+
T Consensus 84 ~ys~~~g~it~~~st~~h~-------------------------------------~~v~~~~~~~~~~ciyS~~ad~~v 126 (541)
T KOG4547|consen 84 LYSVAGGEITAKLSTDKHY-------------------------------------GNVNEILDAQRLGCIYSVGADLKV 126 (541)
T ss_pred EEEecCCeEEEEEecCCCC-------------------------------------CcceeeecccccCceEecCCceeE
Confidence 55554444332221 1222 334555544 3447778888888
Q ss_pred EEEEccCCceeeeccccccccCCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEccCCCCCeEEEEEecC--
Q 001455 939 QELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVED-- 1016 (1074)
Q Consensus 939 ~IwDl~tg~~~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S~dDgtI~IWDl~t~~~i~~l~gH~~~VtsLafSPD-- 1016 (1074)
..|+...+... +.|......+.+++++||+..+++++ +.|++||+++++.+..|.||.++|+++.|..+
T Consensus 127 ~~~~~~~~~~~------~~~~~~~~~~~sl~is~D~~~l~~as---~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~ 197 (541)
T KOG4547|consen 127 VYILEKEKVII------RIWKEQKPLVSSLCISPDGKILLTAS---RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLID 197 (541)
T ss_pred EEEecccceee------eeeccCCCccceEEEcCCCCEEEecc---ceEEEEEccCceEEEEecCCCcceEEEEEEEecc
Confidence 88888775443 45566778889999999999888765 78999999999999999999999999999876
Q ss_pred ---CCEEEEEE-CCCcEEEEECCC----CcEEEEEeCCC-CeEE--EE-EcC---CEEEEEECCCcEEEE
Q 001455 1017 ---FIYLNYNS-SASSLQIWLRGT----QQKVGRISAGS-KITS--LL-TAN---DIVLCGTETGLIKGW 1071 (1074)
Q Consensus 1017 ---G~~LaSGS-~DGtIrIWDl~t----g~~l~tL~~hs-~Vts--La-~dg---~~LaSGs~DG~IrIW 1071 (1074)
|.|+.++. .+..+.+|-... +...+.+...+ +|+. .. -++ -.+++...+|.+..+
T Consensus 198 g~~G~~vLssa~~~r~i~~w~v~~~~kkks~~~sl~~~dipv~~ds~~~ed~~~~l~lAst~~~g~v~~~ 267 (541)
T KOG4547|consen 198 GIIGKYVLSSAAAERGITVWVVEKEDKKKSLSCSLTVPDIPVTSDSGLLEDGTIPLVLASTLIPGIVHLK 267 (541)
T ss_pred ccccceeeeccccccceeEEEEEcccccchhheeeccCCCCeEeccccccccccceEEeeeccCceeeec
Confidence 67766643 556678886443 23344444432 2332 11 122 255566666655443
No 243
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.75 E-value=2.6e-06 Score=99.29 Aligned_cols=263 Identities=11% Similarity=0.115 Sum_probs=158.1
Q ss_pred cEEEEEEe-CCEEEEEECCCcEEEEECCCCCeeEEEEeccCCCCEEEEEEcCCCCEEEEE-----eCC-----CeEEEEE
Q 001455 796 AVTALIYY-KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSG-----SAD-----KTIGVWQ 864 (1074)
Q Consensus 796 ~VtsLafS-~~~LaSGs~DGtVrIWDl~t~~~~~i~tl~gH~~~VtsLafSpdg~~LaSG-----S~D-----GtIrIWD 864 (1074)
+++..+++ ++.+++.+.++.|+|++...... +.+... ..+.++.|+|-|.+|.|= ..| -.+++|+
T Consensus 36 ~~~v~~~S~~G~lfA~~~~~~v~i~~~~~~~~--~lt~~~--~~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~ 111 (566)
T KOG2315|consen 36 PCNVFAYSNNGRLFAYSDNQVVKVFEIATLKV--VLCVEL--KKTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYN 111 (566)
T ss_pred cceeEEEcCCCcEEEEEcCCeEEEEEccCCcE--EEEecc--ceeeeeeecccccccccccccccccCCCCCCCceeeee
Confidence 46677777 78888899999999999988752 333322 278999999999987751 222 3467999
Q ss_pred ccCCceEEEEEeccCC-CeEEEc----------------------------------------cCCC--eEEEE-----e
Q 001455 865 MVQRKLELIEVIATKE-PIRKLD----------------------------------------TYGK--TIFAS-----T 896 (1074)
Q Consensus 865 l~tg~~~~~~~~~h~~-~V~s~s----------------------------------------~dg~--~L~sg-----S 896 (1074)
+.++............ .+..|+ +.+. .+++- +
T Consensus 112 vet~~~~s~~q~k~Q~~W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kG 191 (566)
T KOG2315|consen 112 VETGVQRSQIQKKMQNGWVPQFSIDESLAARLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKG 191 (566)
T ss_pred eccceehhheehhhhcCcccccccchhhhhhhhcceEEEEecCCccceeeeeeccceeeEEecCCCCCceEEEEccCCCC
Confidence 9885332111111111 111122 2211 11111 1
Q ss_pred cCCeEEEEeCC--Cc-----eeeeecCCCeEEEEEe-CCE--EEEEE-----------CCCcEEEEEccCCceeeecccc
Q 001455 897 QGHRMKVIDSS--RT-----LKDIYRSKGIKSMSVV-QGK--IYIGC-----------MDSSIQELAVSNNVEREIKAPF 955 (1074)
Q Consensus 897 ~DgtI~VWDl~--~~-----l~~l~~~~~V~sLa~s-dgk--LlaGs-----------~DgsI~IwDl~tg~~~~i~~~~ 955 (1074)
.-+.|++|... .. .+.+...+ --.+.|. -|. ++..+ ...+++++++.+ ....+.
T Consensus 192 aPa~vri~~~~~~~~~~~~a~ksFFkad-kvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g-~s~~V~--- 266 (566)
T KOG2315|consen 192 APASVRIYKYPEEGQHQPVANKSFFKAD-KVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQG-ESVSVP--- 266 (566)
T ss_pred CCcEEEEeccccccccchhhhccccccc-eeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecC-ceEEEe---
Confidence 11244444433 00 00111111 1123332 121 22111 123556666552 222111
Q ss_pred ccccCCCCCeEEEEEcCCce-EEEEEecCCCeEEEEECCCCCeEEEccCCCCCeEEEEEecCCCEEEEEECC---CcEEE
Q 001455 956 KSWRLQSKPINSLVVYKDWL-YSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSA---SSLQI 1031 (1074)
Q Consensus 956 r~~~~h~~~I~sL~~spd~i-~las~S~dDgtI~IWDl~t~~~i~~l~gH~~~VtsLafSPDG~~LaSGS~D---GtIrI 1031 (1074)
....+||+++.|++++. +.+..+..-..+.|||.+...... + ..++=+++.|+|.|++|+.+|.+ |.|.|
T Consensus 267 ---L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v~d-f--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEv 340 (566)
T KOG2315|consen 267 ---LLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKPVFD-F--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEV 340 (566)
T ss_pred ---cCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCEeEe-C--CCCCccceEECCCCCEEEEeecCCCCCceEE
Confidence 12378999999999875 445555555689999988665433 3 34455688999999999988854 89999
Q ss_pred EECCCCcEEEEEeCCCC-eEEEEEcCCEEEEEEC------CCcEEEEec
Q 001455 1032 WLRGTQQKVGRISAGSK-ITSLLTANDIVLCGTE------TGLIKGWIP 1073 (1074)
Q Consensus 1032 WDl~tg~~l~tL~~hs~-VtsLa~dg~~LaSGs~------DG~IrIWdi 1073 (1074)
||+.+.+++..+...+. +..+++||+++++++. |+.++||+.
T Consensus 341 wDv~n~K~i~~~~a~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhy 389 (566)
T KOG2315|consen 341 WDVPNRKLIAKFKAANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHY 389 (566)
T ss_pred EeccchhhccccccCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEe
Confidence 99999999999987755 5568888999988776 678999974
No 244
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.74 E-value=2e-05 Score=90.68 Aligned_cols=253 Identities=11% Similarity=0.049 Sum_probs=153.9
Q ss_pred CcEEEEECCCCCeeEEEEeccCCCCEEEEEEcCCCCEEEEEeC----------CCeEEEEEccCCceEEEEEeccC----
Q 001455 814 GSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSA----------DKTIGVWQMVQRKLELIEVIATK---- 879 (1074)
Q Consensus 814 GtVrIWDl~t~~~~~i~tl~gH~~~VtsLafSpdg~~LaSGS~----------DGtIrIWDl~tg~~~~~~~~~h~---- 879 (1074)
|+|.+.|..+.+. +.++..-..+- .+ ++|||+.|+.+.. +..|.+||..+++.......+.+
T Consensus 27 ~~v~ViD~~~~~v--~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~ 102 (352)
T TIGR02658 27 TQVYTIDGEAGRV--LGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFL 102 (352)
T ss_pred ceEEEEECCCCEE--EEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhh
Confidence 8899999998754 45554333332 24 9999999776554 78999999999987655444322
Q ss_pred ----CCeEEEccCCCeEEEEe-c-CCeEEEEeCCC--ceeeeecCCCeEEEEEeCCEEEEEECCCcEEEEEccCCceeee
Q 001455 880 ----EPIRKLDTYGKTIFAST-Q-GHRMKVIDSSR--TLKDIYRSKGIKSMSVVQGKIYIGCMDSSIQELAVSNNVEREI 951 (1074)
Q Consensus 880 ----~~V~s~s~dg~~L~sgS-~-DgtI~VWDl~~--~l~~l~~~~~V~sLa~sdgkLlaGs~DgsI~IwDl~tg~~~~i 951 (1074)
.....++++|+++++.. . ++.|.+.|+.. ....+.......-+..++....+-|.||......+.+......
T Consensus 103 ~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~ 182 (352)
T TIGR02658 103 VGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKI 182 (352)
T ss_pred ccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEE
Confidence 12456899999988776 3 68999999872 2333333333222222334444445566555544433211111
Q ss_pred ccccccccCCCCCeEEE-EEcC-CceEEEEEecCCCeEEEEECCCC-----CeEEEccC-------CCCCeEEEEEecCC
Q 001455 952 KAPFKSWRLQSKPINSL-VVYK-DWLYSASSSVEGSNIKEWRRHRK-----PQISIAPE-------KGTTIQAMAVVEDF 1017 (1074)
Q Consensus 952 ~~~~r~~~~h~~~I~sL-~~sp-d~i~las~S~dDgtI~IWDl~t~-----~~i~~l~g-------H~~~VtsLafSPDG 1017 (1074)
. ....+.....++..- .+.+ ++.++.... + |+|.+.|+... .....+.. ..+.+.-++++|+|
T Consensus 183 ~-~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~-e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg 259 (352)
T TIGR02658 183 K-PTEVFHPEDEYLINHPAYSNKSGRLVWPTY-T-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRAR 259 (352)
T ss_pred e-eeeeecCCccccccCCceEcCCCcEEEEec-C-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCC
Confidence 0 001111111111000 2233 677666554 3 89999995433 22222211 12234449999999
Q ss_pred CEEEEEE----------CCCcEEEEECCCCcEEEEEeCCCCeEEEEEc--CC-EEEEEE-CCCcEEEEec
Q 001455 1018 IYLNYNS----------SASSLQIWLRGTQQKVGRISAGSKITSLLTA--ND-IVLCGT-ETGLIKGWIP 1073 (1074)
Q Consensus 1018 ~~LaSGS----------~DGtIrIWDl~tg~~l~tL~~hs~VtsLa~d--g~-~LaSGs-~DG~IrIWdi 1073 (1074)
+.+.... ..+.|.++|..+++.+..+..+..+..++++ ++ .|++.. .++.|.+.|.
T Consensus 260 ~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~ 329 (352)
T TIGR02658 260 DRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALSTGDKTLYIFDA 329 (352)
T ss_pred CEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCCCCcEEEEEC
Confidence 9887743 2257999999999999999988788887765 66 666555 6788999875
No 245
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.73 E-value=4.3e-07 Score=100.22 Aligned_cols=238 Identities=10% Similarity=0.100 Sum_probs=158.4
Q ss_pred CCCCcEEEEEEe--CCEEEEEECCCcEEEEECC-CCCeeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEccCC
Q 001455 792 KCSGAVTALIYY--KGLLCSGFSDGSIKMWDIK-KQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQR 868 (1074)
Q Consensus 792 gH~~~VtsLafS--~~~LaSGs~DGtVrIWDl~-t~~~~~i~tl~gH~~~VtsLafSpdg~~LaSGS~DGtIrIWDl~tg 868 (1074)
||.+.|+....- ..-+++.+.|.++|||--. .++.-+ .....-..+++++.+.+....|+.|-..|++.-+.+...
T Consensus 22 G~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wp-sI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sed 100 (404)
T KOG1409|consen 22 GSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWP-SIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSED 100 (404)
T ss_pred CchhhhhhheeccCCCCeEEccccceeeeEEeccccccCc-hhhhhCCCCceEeeeeccceEEEEEEecceEEEEEhhhh
Confidence 788888887666 5579999999999999543 333211 111234578999999999999999999999988865431
Q ss_pred ---ceEEEEEeccCCCeEE--EccCCCeEEEEecCCeEEEEeCCC---ceeeeecCCCeEEEEEeCCEEEEEECCCcEEE
Q 001455 869 ---KLELIEVIATKEPIRK--LDTYGKTIFASTQGHRMKVIDSSR---TLKDIYRSKGIKSMSVVQGKIYIGCMDSSIQE 940 (1074)
Q Consensus 869 ---~~~~~~~~~h~~~V~s--~s~dg~~L~sgS~DgtI~VWDl~~---~l~~l~~~~~V~sLa~sdgkLlaGs~DgsI~I 940 (1074)
-........|...+.. ++-....+++.+.|..+. |-..+ .+..........++.+.-+..+.|...|.|..
T Consensus 101 fnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~-~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~ 179 (404)
T KOG1409|consen 101 FNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFA-WHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITM 179 (404)
T ss_pred hhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceE-EEeeccCCcccceEeeccCCCCceeeEEEEecccccceEE
Confidence 1122234456667765 455566777777776542 32211 11110000001111111112334566666666
Q ss_pred EEccCCceeeeccccccccCCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCC-eEEEccCCCCCeEEEEEecCCCE
Q 001455 941 LAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKP-QISIAPEKGTTIQAMAVVEDFIY 1019 (1074)
Q Consensus 941 wDl~tg~~~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S~dDgtI~IWDl~t~~-~i~~l~gH~~~VtsLafSPDG~~ 1019 (1074)
..+....... +..+.+|..++.++.+.+....+.++. .|..+.+||+..++ ....+.+|...|..+..-+--+.
T Consensus 180 lr~~~~~~~~----i~~~~~h~~~~~~l~Wd~~~~~LfSg~-~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~ 254 (404)
T KOG1409|consen 180 LKLEQNGCQL----ITTFNGHTGEVTCLKWDPGQRLLFSGA-SDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQ 254 (404)
T ss_pred EEEeecCCce----EEEEcCcccceEEEEEcCCCcEEEecc-ccCceEEEeccCCcceeeeeccchhhhhhhhhhhhhee
Confidence 6554433322 245678999999999999988888876 78899999986544 34567789999999998888899
Q ss_pred EEEEECCCcEEEEECCC
Q 001455 1020 LNYNSSASSLQIWLRGT 1036 (1074)
Q Consensus 1020 LaSGS~DGtIrIWDl~t 1036 (1074)
+.+++.||.|.+|+.+.
T Consensus 255 l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 255 LISCGEDGGIVVWNMNV 271 (404)
T ss_pred eeeccCCCeEEEEeccc
Confidence 99999999999998653
No 246
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.73 E-value=3.2e-06 Score=101.17 Aligned_cols=229 Identities=13% Similarity=0.060 Sum_probs=137.4
Q ss_pred cEEEEECCCCCeeEEEEeccCCCCEEEEEEcCCCCEEEEEeC-CC--eEEEEEccCCceEEEEEeccCCCeEEEccCCCe
Q 001455 815 SIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSA-DK--TIGVWQMVQRKLELIEVIATKEPIRKLDTYGKT 891 (1074)
Q Consensus 815 tVrIWDl~t~~~~~i~tl~gH~~~VtsLafSpdg~~LaSGS~-DG--tIrIWDl~tg~~~~~~~~~h~~~V~s~s~dg~~ 891 (1074)
.+.++|.+.... ..+..+...+.+..|+|||+.|+..+. ++ .|.+||+.+++............-..|+|+|+.
T Consensus 199 ~l~i~d~dG~~~---~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~ 275 (448)
T PRK04792 199 QLMIADYDGYNE---QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKK 275 (448)
T ss_pred EEEEEeCCCCCc---eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCE
Confidence 677778776543 344566778999999999999876653 32 588899988865332222111122468999997
Q ss_pred EEEE-ecCC--eEEEEeCCC-ceeeeecC-CCeEEEEEe-CCE-EEEEE-CCC--cEEEEEccCCceeeeccccccccCC
Q 001455 892 IFAS-TQGH--RMKVIDSSR-TLKDIYRS-KGIKSMSVV-QGK-IYIGC-MDS--SIQELAVSNNVEREIKAPFKSWRLQ 961 (1074)
Q Consensus 892 L~sg-S~Dg--tI~VWDl~~-~l~~l~~~-~~V~sLa~s-dgk-LlaGs-~Dg--sI~IwDl~tg~~~~i~~~~r~~~~h 961 (1074)
++.. +.++ .|++||+.. ....+..+ .......|+ ||+ ++..+ .++ .|+++|+.+++...+. + .
T Consensus 276 La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt-----~--~ 348 (448)
T PRK04792 276 LALVLSKDGQPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLT-----F--E 348 (448)
T ss_pred EEEEEeCCCCeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEe-----c--C
Confidence 7654 5555 477778763 33333332 234567786 766 44433 333 4666777776543321 1 1
Q ss_pred CCCeEEEEEcCCceEEEEEecCCC--eEEEEECCCCCeEEEccCCCCCeEEEEEecCCCEEEEEECC-C--cEEEEECCC
Q 001455 962 SKPINSLVVYKDWLYSASSSVEGS--NIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSA-S--SLQIWLRGT 1036 (1074)
Q Consensus 962 ~~~I~sL~~spd~i~las~S~dDg--tI~IWDl~t~~~i~~l~gH~~~VtsLafSPDG~~LaSGS~D-G--tIrIWDl~t 1036 (1074)
........++|++.+++..+..++ .|.++|+.++.... +.... ......|+|||++|+..+.+ | .+++++. +
T Consensus 349 g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt~~~-~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~ 425 (448)
T PRK04792 349 GEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQV-LTSTR-LDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-D 425 (448)
T ss_pred CCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEE-ccCCC-CCCCceECCCCCEEEEEEecCCceEEEEEEC-C
Confidence 222334678999887766554444 45567877776433 32221 22345799999998776643 3 3666776 5
Q ss_pred CcEEEEEeCC-CCeEEEEEcC
Q 001455 1037 QQKVGRISAG-SKITSLLTAN 1056 (1074)
Q Consensus 1037 g~~l~tL~~h-s~VtsLa~dg 1056 (1074)
|.....+..+ +.+...+|++
T Consensus 426 G~~~~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 426 GRFKARLPAGQGEVKSPAWSP 446 (448)
T ss_pred CCceEECcCCCCCcCCCccCC
Confidence 5566666554 3355555553
No 247
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=98.72 E-value=5.4e-07 Score=95.72 Aligned_cols=116 Identities=15% Similarity=0.226 Sum_probs=86.3
Q ss_pred CCCeEEEEEe-CCE-EEE--EECCCcEEEEEccCCceeeeccccccccCCCCCeEEEEEcCCceEEEEEecC--CCeEEE
Q 001455 916 SKGIKSMSVV-QGK-IYI--GCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVE--GSNIKE 989 (1074)
Q Consensus 916 ~~~V~sLa~s-dgk-Lla--Gs~DgsI~IwDl~tg~~~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S~d--DgtI~I 989 (1074)
...|.+++|+ +|. +++ |..++.|.+||++..... ..+...++.+.|+|+|.+++.++.. .|.+.+
T Consensus 59 ~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~~~i~---------~~~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~ 129 (194)
T PF08662_consen 59 EGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKGKKIF---------SFGTQPRNTISWSPDGRFLVLAGFGNLNGDLEF 129 (194)
T ss_pred CCceEEEEECcCCCEEEEEEccCCcccEEEcCcccEeE---------eecCCCceEEEECCCCCEEEEEEccCCCcEEEE
Confidence 4469999996 554 433 556789999999742221 2235677899999999999877633 468999
Q ss_pred EECCCCCeEEEccCCCCCeEEEEEecCCCEEEEEEC------CCcEEEEECCCCcEEEEE
Q 001455 990 WRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSS------ASSLQIWLRGTQQKVGRI 1043 (1074)
Q Consensus 990 WDl~t~~~i~~l~gH~~~VtsLafSPDG~~LaSGS~------DGtIrIWDl~tg~~l~tL 1043 (1074)
||.++.+.+.... | ..++.++|+|||+++++++. |+.++||+.. |+.+...
T Consensus 130 wd~~~~~~i~~~~-~-~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~~ 186 (194)
T PF08662_consen 130 WDVRKKKKISTFE-H-SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ-GRLLYKK 186 (194)
T ss_pred EECCCCEEeeccc-c-CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEec-CeEeEec
Confidence 9999888776653 3 34789999999999999874 7889999974 6666544
No 248
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=98.70 E-value=7.7e-07 Score=97.59 Aligned_cols=262 Identities=9% Similarity=0.012 Sum_probs=167.1
Q ss_pred EEEe--CCEEEEEECCCcEEEEECCCCCeeEEEEeccCCCCEEEEEEcCCCCEE-EEEeCCCeEEEEEccCCceEEEEEe
Q 001455 800 LIYY--KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESL-LSGSADKTIGVWQMVQRKLELIEVI 876 (1074)
Q Consensus 800 LafS--~~~LaSGs~DGtVrIWDl~t~~~~~i~tl~gH~~~VtsLafSpdg~~L-aSGS~DGtIrIWDl~tg~~~~~~~~ 876 (1074)
.+|+ ++++|+++.- .+.|-|..+-+. ..+-..-+.|.-+.|..|.-++ .....|+.|.+|++...+..+....
T Consensus 14 c~fSp~g~yiAs~~~y-rlviRd~~tlq~---~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIde 89 (447)
T KOG4497|consen 14 CSFSPCGNYIASLSRY-RLVIRDSETLQL---HQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDE 89 (447)
T ss_pred eeECCCCCeeeeeeee-EEEEeccchhhH---HHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEecc
Confidence 3455 6788888766 677888776542 1122224678889999888885 4567888999999988776665544
Q ss_pred ccCCCe-EEEccCCCe-EEEEecCCeEEEEeCCCcee-eee-cCCCeEEEEEe-CCEEEEEEC-----------------
Q 001455 877 ATKEPI-RKLDTYGKT-IFASTQGHRMKVIDSSRTLK-DIY-RSKGIKSMSVV-QGKIYIGCM----------------- 934 (1074)
Q Consensus 877 ~h~~~V-~s~s~dg~~-L~sgS~DgtI~VWDl~~~l~-~l~-~~~~V~sLa~s-dgkLlaGs~----------------- 934 (1074)
+..+-. .+++|+|+. +.+...+-.|.||.+..... .+. ....+..++|. +|++.+-..
T Consensus 90 g~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ 169 (447)
T KOG4497|consen 90 GQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWI 169 (447)
T ss_pred CCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHH
Confidence 444333 258999965 55566788999999884332 222 34567888886 888665322
Q ss_pred --------------------CCcEEEEEccCCceeeeccccccccCCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCC
Q 001455 935 --------------------DSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHR 994 (1074)
Q Consensus 935 --------------------DgsI~IwDl~tg~~~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S~dDgtI~IWDl~t 994 (1074)
+..+.+||-.-.-.... ..-+-.+..+.++|.+.+++.++ .|+.+++.+--+
T Consensus 170 ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~a-------Ye~~lG~k~v~wsP~~qflavGs-yD~~lrvlnh~t 241 (447)
T KOG4497|consen 170 LLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYA-------YERGLGLKFVEWSPCNQFLAVGS-YDQMLRVLNHFT 241 (447)
T ss_pred HHHhcCCCcccccCceECCCCcEEEEecchhhheeee-------eeeccceeEEEeccccceEEeec-cchhhhhhceee
Confidence 22233443221110000 01145677888899888888777 455554432110
Q ss_pred CC------------------------------------------------------------eEEEcc------CCCCCe
Q 001455 995 KP------------------------------------------------------------QISIAP------EKGTTI 1008 (1074)
Q Consensus 995 ~~------------------------------------------------------------~i~~l~------gH~~~V 1008 (1074)
-+ .+..++ .....+
T Consensus 242 Wk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~ 321 (447)
T KOG4497|consen 242 WKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGA 321 (447)
T ss_pred eeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCccccc
Confidence 00 001111 111246
Q ss_pred EEEEEecCCCEEEEEEC--CCcEEEEECCCCcEEEEEeCCCCeEEEEEcCC--EEEEEECCCcEEEEec
Q 001455 1009 QAMAVVEDFIYLNYNSS--ASSLQIWLRGTQQKVGRISAGSKITSLLTAND--IVLCGTETGLIKGWIP 1073 (1074)
Q Consensus 1009 tsLafSPDG~~LaSGS~--DGtIrIWDl~tg~~l~tL~~hs~VtsLa~dg~--~LaSGs~DG~IrIWdi 1073 (1074)
.-++|++|..|++|-.+ -+.+-+||++..+.-..+...++|..+.|++. .|+.+....++++|.+
T Consensus 322 g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQk~piraf~WdP~~prL~vctg~srLY~W~p 390 (447)
T KOG4497|consen 322 GKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLIQKHPIRAFEWDPGRPRLVVCTGKSRLYFWAP 390 (447)
T ss_pred ceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhhhccceeEEEeCCCCceEEEEcCCceEEEEcC
Confidence 67999999999999763 36799999998887766666678999999954 5555555667999976
No 249
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.70 E-value=6e-06 Score=96.25 Aligned_cols=245 Identities=11% Similarity=0.073 Sum_probs=143.5
Q ss_pred EEEEEe--CCEEEEEECCCcEEEEECCCCCeeEEEEeccCCCCEEEEEEcCCCCEEEEE-eCCCeEEEEEccCCceEEEE
Q 001455 798 TALIYY--KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSG-SADKTIGVWQMVQRKLELIE 874 (1074)
Q Consensus 798 tsLafS--~~~LaSGs~DGtVrIWDl~t~~~~~i~tl~gH~~~VtsLafSpdg~~LaSG-S~DGtIrIWDl~tg~~~~~~ 874 (1074)
..+.|+ +.++++++.||.|.++|+.+.+. +.+++.. ....++++++||++++++ ..++.+.++|..+.+.....
T Consensus 40 ~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~--v~~i~~G-~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I 116 (369)
T PF02239_consen 40 AGLKFSPDGRYLYVANRDGTVSVIDLATGKV--VATIKVG-GNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTI 116 (369)
T ss_dssp EEEE-TT-SSEEEEEETTSEEEEEETTSSSE--EEEEE-S-SEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEE
T ss_pred eEEEecCCCCEEEEEcCCCeEEEEECCcccE--EEEEecC-CCcceEEEcCCCCEEEEEecCCCceeEeccccccceeec
Confidence 345677 45788889999999999999864 6666543 346789999999997755 57899999999987765433
Q ss_pred Eec------cCCCeEEE--ccCCC-eEEEEecCCeEEEEeCCCc--e--eeeecCCCeEEEEEe-CCE-EEE-EECCCcE
Q 001455 875 VIA------TKEPIRKL--DTYGK-TIFASTQGHRMKVIDSSRT--L--KDIYRSKGIKSMSVV-QGK-IYI-GCMDSSI 938 (1074)
Q Consensus 875 ~~~------h~~~V~s~--s~dg~-~L~sgS~DgtI~VWDl~~~--l--~~l~~~~~V~sLa~s-dgk-Lla-Gs~DgsI 938 (1074)
..+ ....+.++ ++... ++++.-..+.|.+.|.... . ..+..........|+ +++ +++ ...++.|
T Consensus 117 ~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i 196 (369)
T PF02239_consen 117 PTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKI 196 (369)
T ss_dssp E--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEE
T ss_pred ccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeeccccccee
Confidence 221 12234443 34445 3444445578877786532 1 222234556667775 555 333 3445567
Q ss_pred EEEEccCCceeeec----cc---------------------------------------------cccccCCCCCeEEEE
Q 001455 939 QELAVSNNVEREIK----AP---------------------------------------------FKSWRLQSKPINSLV 969 (1074)
Q Consensus 939 ~IwDl~tg~~~~i~----~~---------------------------------------------~r~~~~h~~~I~sL~ 969 (1074)
-++|..+++..... .+ .+.+...+.+ ..+.
T Consensus 197 ~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~ 275 (369)
T PF02239_consen 197 AVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIK 275 (369)
T ss_dssp EEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE
T ss_pred EEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-ceee
Confidence 77776654332110 00 0001111223 4566
Q ss_pred EcCCceEEEEE---ecCCCeEEEEECCCCCeEEEccC-CCCCeEEEEEecCCCEEEEEEC--CCcEEEEECCCCcEEEEE
Q 001455 970 VYKDWLYSASS---SVEGSNIKEWRRHRKPQISIAPE-KGTTIQAMAVVEDFIYLNYNSS--ASSLQIWLRGTQQKVGRI 1043 (1074)
Q Consensus 970 ~spd~i~las~---S~dDgtI~IWDl~t~~~i~~l~g-H~~~VtsLafSPDG~~LaSGS~--DGtIrIWDl~tg~~l~tL 1043 (1074)
.||++.++... +++.++|.++|..+.+....+.. ....+..+.|++||+++..+.. +|.|.|||..+.+.+.++
T Consensus 276 thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i 355 (369)
T PF02239_consen 276 THPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRI 355 (369)
T ss_dssp --TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEEE
T ss_pred cCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEEE
Confidence 68888888776 45668999999999877766643 2335899999999997765553 347999999999999998
Q ss_pred eCC
Q 001455 1044 SAG 1046 (1074)
Q Consensus 1044 ~~h 1046 (1074)
...
T Consensus 356 ~~~ 358 (369)
T PF02239_consen 356 PVP 358 (369)
T ss_dssp E--
T ss_pred Eee
Confidence 843
No 250
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.69 E-value=4.3e-06 Score=99.43 Aligned_cols=198 Identities=14% Similarity=0.068 Sum_probs=117.7
Q ss_pred CeEEEEEccCCceEEEEEeccCCCeE--EEccCCCeEEEEecC---CeEEEEeCCC-ceeeee-cCCCeEEEEEe-CCE-
Q 001455 858 KTIGVWQMVQRKLELIEVIATKEPIR--KLDTYGKTIFASTQG---HRMKVIDSSR-TLKDIY-RSKGIKSMSVV-QGK- 928 (1074)
Q Consensus 858 GtIrIWDl~tg~~~~~~~~~h~~~V~--s~s~dg~~L~sgS~D---gtI~VWDl~~-~l~~l~-~~~~V~sLa~s-dgk- 928 (1074)
..|.+||....... ....+...+. .|+|+|+.++.++.+ ..|.+||+.. ....+. ....+....|+ ||+
T Consensus 176 ~~L~~~D~dG~~~~--~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~ 253 (427)
T PRK02889 176 YQLQISDADGQNAQ--SALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRT 253 (427)
T ss_pred cEEEEECCCCCCce--EeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCE
Confidence 45777776443322 2233445554 588999998887643 3699999873 333333 23345677886 775
Q ss_pred EE-EEECCCcEEEEEc--cCCceeeeccccccccCCCCCeEEEEEcCCceEEEEEecCCCeEEEEE--CCCCCeEEEccC
Q 001455 929 IY-IGCMDSSIQELAV--SNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWR--RHRKPQISIAPE 1003 (1074)
Q Consensus 929 Ll-aGs~DgsI~IwDl--~tg~~~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S~dDgtI~IWD--l~t~~~i~~l~g 1003 (1074)
++ +.+.+|...+|.+ .++.... +..+........|+||+..++..+..++...+|. ..++...... .
T Consensus 254 la~~~~~~g~~~Iy~~d~~~~~~~~-------lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt-~ 325 (427)
T PRK02889 254 LAVALSRDGNSQIYTVNADGSGLRR-------LTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVT-F 325 (427)
T ss_pred EEEEEccCCCceEEEEECCCCCcEE-------CCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEe-c
Confidence 54 4667777666654 4433222 1223334556789999988775553445566665 4455433222 2
Q ss_pred CCCCeEEEEEecCCCEEEEEECCC---cEEEEECCCCcEEEEEeCCCCeE--EEEEcCCEEEEEECCC
Q 001455 1004 KGTTIQAMAVVEDFIYLNYNSSAS---SLQIWLRGTQQKVGRISAGSKIT--SLLTANDIVLCGTETG 1066 (1074)
Q Consensus 1004 H~~~VtsLafSPDG~~LaSGS~DG---tIrIWDl~tg~~l~tL~~hs~Vt--sLa~dg~~LaSGs~DG 1066 (1074)
+........|||||++|+..+.++ .|.+||+.+++... +..+.... +++++|++|+.++.++
T Consensus 326 ~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt~~~~~~~p~~spdg~~l~~~~~~~ 392 (427)
T PRK02889 326 TGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTA-LTDTTRDESPSFAPNGRYILYATQQG 392 (427)
T ss_pred CCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEE-ccCCCCccCceECCCCCEEEEEEecC
Confidence 233345678999999999877554 69999998887543 33222223 3455677666655443
No 251
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.69 E-value=2.4e-06 Score=101.67 Aligned_cols=209 Identities=10% Similarity=-0.023 Sum_probs=132.9
Q ss_pred CCCCcEEEEEEe--CCEEEEEEC---CCcEEEEECCCCCeeEEEEeccCCCCEEEEEEcCCCCEEE-EEeCCCe--EEEE
Q 001455 792 KCSGAVTALIYY--KGLLCSGFS---DGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLL-SGSADKT--IGVW 863 (1074)
Q Consensus 792 gH~~~VtsLafS--~~~LaSGs~---DGtVrIWDl~t~~~~~i~tl~gH~~~VtsLafSpdg~~La-SGS~DGt--IrIW 863 (1074)
.|.+.|.+..|+ +..|+..+. +..|.+||+.+++. ..+..+.+.+.+.+|+|||+.|+ +.+.+|. |.+|
T Consensus 199 ~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~---~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~ 275 (435)
T PRK05137 199 DGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQR---ELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTM 275 (435)
T ss_pred cCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcE---EEeecCCCcccCcEECCCCCEEEEEEecCCCceEEEE
Confidence 567899999999 446666553 46899999998764 33445667788999999999865 5666665 7777
Q ss_pred EccCCceEEEEEeccCCCe--EEEccCCCeEEEEec-CC--eEEEEeCCC-ceeeeec-CCCeEEEEEe-CCE-EEEEEC
Q 001455 864 QMVQRKLELIEVIATKEPI--RKLDTYGKTIFASTQ-GH--RMKVIDSSR-TLKDIYR-SKGIKSMSVV-QGK-IYIGCM 934 (1074)
Q Consensus 864 Dl~tg~~~~~~~~~h~~~V--~s~s~dg~~L~sgS~-Dg--tI~VWDl~~-~l~~l~~-~~~V~sLa~s-dgk-LlaGs~ 934 (1074)
|+.++.... ...+.... ..++++|+.++..+. ++ .|++||+.+ ....+.. ...+....|+ +|+ ++....
T Consensus 276 d~~~~~~~~--Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~~~SpdG~~ia~~~~ 353 (435)
T PRK05137 276 DLRSGTTTR--LTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGRYSTPVWSPRGDLIAFTKQ 353 (435)
T ss_pred ECCCCceEE--ccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCcccCeEECCCCCEEEEEEc
Confidence 888876533 22232222 468999998887764 33 688888763 3333332 3345567785 776 444332
Q ss_pred ---CCcEEEEEccCCceeeeccccccccCCCCCeEEEEEcCCceEEEEEecCC-----CeEEEEECCCCCeEEEccCCCC
Q 001455 935 ---DSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEG-----SNIKEWRRHRKPQISIAPEKGT 1006 (1074)
Q Consensus 935 ---DgsI~IwDl~tg~~~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S~dD-----gtI~IWDl~t~~~i~~l~gH~~ 1006 (1074)
+..|.+||+.++...... ....+....|+|++..++..+..+ ..+.++|+.++.. +.+. ..+
T Consensus 354 ~~~~~~i~~~d~~~~~~~~lt--------~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l~-~~~ 423 (435)
T PRK05137 354 GGGQFSIGVMKPDGSGERILT--------SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE-REVP-TPG 423 (435)
T ss_pred CCCceEEEEEECCCCceEecc--------CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce-EEcc-CCC
Confidence 236888888665432221 122456778999988766544222 2577788876654 3343 234
Q ss_pred CeEEEEEec
Q 001455 1007 TIQAMAVVE 1015 (1074)
Q Consensus 1007 ~VtsLafSP 1015 (1074)
.+...+|+|
T Consensus 424 ~~~~p~Wsp 432 (435)
T PRK05137 424 DASDPAWSP 432 (435)
T ss_pred CccCcccCC
Confidence 466677776
No 252
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=98.65 E-value=1.1e-06 Score=93.46 Aligned_cols=108 Identities=12% Similarity=0.080 Sum_probs=83.4
Q ss_pred CCCeEEEEEcCCceEEEEE-ecCCCeEEEEECCCCCeEEEccCCCCCeEEEEEecCCCEEEEEECC---CcEEEEECCCC
Q 001455 962 SKPINSLVVYKDWLYSASS-SVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSA---SSLQIWLRGTQ 1037 (1074)
Q Consensus 962 ~~~I~sL~~spd~i~las~-S~dDgtI~IWDl~t~~~i~~l~gH~~~VtsLafSPDG~~LaSGS~D---GtIrIWDl~tg 1037 (1074)
..+|..++++|++..++.. +..++.|.+||.+ +..+..+ +...++.+.|+|+|+++++|+.+ |.|.+||.++.
T Consensus 59 ~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~--~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~ 135 (194)
T PF08662_consen 59 EGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSF--GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKK 135 (194)
T ss_pred CCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEee--cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence 4579999999998765443 3345689999997 4445555 35678899999999999998744 67999999999
Q ss_pred cEEEEEeCCCCeEEEEEc--CCEEEEEEC------CCcEEEEec
Q 001455 1038 QKVGRISAGSKITSLLTA--NDIVLCGTE------TGLIKGWIP 1073 (1074)
Q Consensus 1038 ~~l~tL~~hs~VtsLa~d--g~~LaSGs~------DG~IrIWdi 1073 (1074)
+.+.+.... .++.++|+ |+++++++. |+.++||+.
T Consensus 136 ~~i~~~~~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~ 178 (194)
T PF08662_consen 136 KKISTFEHS-DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSF 178 (194)
T ss_pred EEeeccccC-cEEEEEEcCCCCEEEEEEeccceeccccEEEEEe
Confidence 999887644 46666665 778888774 788999974
No 253
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.65 E-value=3.8e-06 Score=98.80 Aligned_cols=205 Identities=13% Similarity=0.027 Sum_probs=121.0
Q ss_pred CCCCcEEEEEEe--CCEEEEEECC---CcEEEEECCCCCeeEEEEeccCCCCEEEEEEcCCCCEEE-EEeCCC--eEEEE
Q 001455 792 KCSGAVTALIYY--KGLLCSGFSD---GSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLL-SGSADK--TIGVW 863 (1074)
Q Consensus 792 gH~~~VtsLafS--~~~LaSGs~D---GtVrIWDl~t~~~~~i~tl~gH~~~VtsLafSpdg~~La-SGS~DG--tIrIW 863 (1074)
.+.+.+.+..|+ +.+++.++.+ ..|++||+.+++... +..+.+.+.+++|+|||+.|+ +.+.++ .|.+|
T Consensus 187 ~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~---~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~ 263 (417)
T TIGR02800 187 RSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK---VASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVM 263 (417)
T ss_pred cCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE---eecCCCCccceEECCCCCEEEEEECCCCCccEEEE
Confidence 356678888999 4467766543 479999999875432 334556677899999999865 445444 58888
Q ss_pred EccCCceEEEEEeccCCCe--EEEccCCCeEEEEecCCeEEEEeCCCceeeeecCCCeEEEEEeCCEEEEEECCCcEEEE
Q 001455 864 QMVQRKLELIEVIATKEPI--RKLDTYGKTIFASTQGHRMKVIDSSRTLKDIYRSKGIKSMSVVQGKIYIGCMDSSIQEL 941 (1074)
Q Consensus 864 Dl~tg~~~~~~~~~h~~~V--~s~s~dg~~L~sgS~DgtI~VWDl~~~l~~l~~~~~V~sLa~sdgkLlaGs~DgsI~Iw 941 (1074)
|+.++..... ..+.... ..|+++++.++.++..+ ....|+++
T Consensus 264 d~~~~~~~~l--~~~~~~~~~~~~s~dg~~l~~~s~~~----------------------------------g~~~iy~~ 307 (417)
T TIGR02800 264 DLDGKQLTRL--TNGPGIDTEPSWSPDGKSIAFTSDRG----------------------------------GSPQIYMM 307 (417)
T ss_pred ECCCCCEEEC--CCCCCCCCCEEECCCCCEEEEEECCC----------------------------------CCceEEEE
Confidence 9887754322 1121111 24566666655544321 01134455
Q ss_pred EccCCceeeeccccccccCCCCCeEEEEEcCCceEEEEEecCCC--eEEEEECCCCCeEEEccCCCCCeEEEEEecCCCE
Q 001455 942 AVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGS--NIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIY 1019 (1074)
Q Consensus 942 Dl~tg~~~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S~dDg--tI~IWDl~t~~~i~~l~gH~~~VtsLafSPDG~~ 1019 (1074)
|+.++....+ ..+........++|++.+++..+.+++ .|.+||+.++... .+..+ .......|+|||++
T Consensus 308 d~~~~~~~~l-------~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~~-~~~~~p~~spdg~~ 378 (417)
T TIGR02800 308 DADGGEVRRL-------TFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER-VLTDT-GLDESPSFAPNGRM 378 (417)
T ss_pred ECCCCCEEEe-------ecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE-EccCC-CCCCCceECCCCCE
Confidence 5544332211 112344556788998887776653322 7888898876543 33222 23456689999999
Q ss_pred EEEEECCC---cEEEEECCCCcEEEEEeC
Q 001455 1020 LNYNSSAS---SLQIWLRGTQQKVGRISA 1045 (1074)
Q Consensus 1020 LaSGS~DG---tIrIWDl~tg~~l~tL~~ 1045 (1074)
|+..+.++ .+++.+ .++.....+..
T Consensus 379 l~~~~~~~~~~~l~~~~-~~g~~~~~~~~ 406 (417)
T TIGR02800 379 ILYATTRGGRGVLGLVS-TDGRFRARLPL 406 (417)
T ss_pred EEEEEeCCCcEEEEEEE-CCCceeeECCC
Confidence 98877654 344444 33444455543
No 254
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.64 E-value=2.3e-08 Score=113.48 Aligned_cols=181 Identities=8% Similarity=0.097 Sum_probs=151.1
Q ss_pred EEccCCCeEEEEecCCeEEEEeCCCc--eeeeecCCCeEEEEEe-CCEEEEEECCCcEEEEEccCCceeeeccccccccC
Q 001455 884 KLDTYGKTIFASTQGHRMKVIDSSRT--LKDIYRSKGIKSMSVV-QGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRL 960 (1074)
Q Consensus 884 s~s~dg~~L~sgS~DgtI~VWDl~~~--l~~l~~~~~V~sLa~s-dgkLlaGs~DgsI~IwDl~tg~~~~i~~~~r~~~~ 960 (1074)
.++.+|..++.|+.-|.+..+|+... ...+.....|.++.|- +.++++......+++||-...+...++
T Consensus 136 ~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~GtElHClk-------- 207 (545)
T KOG1272|consen 136 DYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQKKYVYVYDNNGTELHCLK-------- 207 (545)
T ss_pred eecCCccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhhhceEEEecCCCcEEeehh--------
Confidence 46788999999999999999998732 2333446678888886 667888889999999998775543332
Q ss_pred CCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEccCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCcEE
Q 001455 961 QSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKV 1040 (1074)
Q Consensus 961 h~~~I~sL~~spd~i~las~S~dDgtI~IWDl~t~~~i~~l~gH~~~VtsLafSPDG~~LaSGS~DGtIrIWDl~tg~~l 1040 (1074)
....+..+.|-|-...+++.+ +.|.++.-|+.+|+.+..+....+.+..+.-.|-...+-+|...|+|.+|.....+++
T Consensus 208 ~~~~v~rLeFLPyHfLL~~~~-~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePL 286 (545)
T KOG1272|consen 208 RHIRVARLEFLPYHFLLVAAS-EAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPL 286 (545)
T ss_pred hcCchhhhcccchhheeeecc-cCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchH
Confidence 245677888888877777766 7789999999999999888878888999999999999999999999999999999998
Q ss_pred EEEeCC-CCeEEEEEc--CCEEEEEECCCcEEEEec
Q 001455 1041 GRISAG-SKITSLLTA--NDIVLCGTETGLIKGWIP 1073 (1074)
Q Consensus 1041 ~tL~~h-s~VtsLa~d--g~~LaSGs~DG~IrIWdi 1073 (1074)
..+-.| ++|.+++++ |+++++.|.|..++|||+
T Consensus 287 vKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDl 322 (545)
T KOG1272|consen 287 VKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDL 322 (545)
T ss_pred HHHHhcCCCcceEEECCCCcEEeecccccceeEeee
Confidence 888777 779999987 889999999999999996
No 255
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.61 E-value=2e-07 Score=106.95 Aligned_cols=271 Identities=17% Similarity=0.188 Sum_probs=168.8
Q ss_pred eecCCCCCcEEEEEEe--CCEEEEEECCCcEEEEECCCC-----CeeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCeE
Q 001455 788 EASHKCSGAVTALIYY--KGLLCSGFSDGSIKMWDIKKQ-----SAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTI 860 (1074)
Q Consensus 788 e~~~gH~~~VtsLafS--~~~LaSGs~DGtVrIWDl~t~-----~~~~i~tl~gH~~~VtsLafSpdg~~LaSGS~DGtI 860 (1074)
..-.||+..|..++-- .+-+++++.|.+|++|.++.. ...+..+++.|+.+|.++.|-.+.++++++ ||.|
T Consensus 729 ~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~gi 806 (1034)
T KOG4190|consen 729 CNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGI 806 (1034)
T ss_pred ecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCcc
Confidence 3344999999999776 457999999999999998642 112567889999999999999998888765 7899
Q ss_pred EEEEccCCceEEEEE----eccCCCeEEEcc-CCCeEEEE-ecCCeEEEEeCCCc-----eeeeec---CCCeEEEEEe-
Q 001455 861 GVWQMVQRKLELIEV----IATKEPIRKLDT-YGKTIFAS-TQGHRMKVIDSSRT-----LKDIYR---SKGIKSMSVV- 925 (1074)
Q Consensus 861 rIWDl~tg~~~~~~~----~~h~~~V~s~s~-dg~~L~sg-S~DgtI~VWDl~~~-----l~~l~~---~~~V~sLa~s- 925 (1074)
.+||.--|+...... .+....|.++.. +...+.+| +...+|+++|.+.+ .+.... +..++++++.
T Consensus 807 HlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~ 886 (1034)
T KOG4190|consen 807 HLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVAD 886 (1034)
T ss_pred eeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEecc
Confidence 999987776533211 122334566644 55555555 67889999998732 222211 3448899885
Q ss_pred -CCEEEEEECCCcEEEEEccCCceeeeccccccccCCCCCeEEEEEcCCceEEEEEecCCCeEEE-EECCCCCeEEEccC
Q 001455 926 -QGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKE-WRRHRKPQISIAPE 1003 (1074)
Q Consensus 926 -dgkLlaGs~DgsI~IwDl~tg~~~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S~dDgtI~I-WDl~t~~~i~~l~g 1003 (1074)
.+++.+|-.+|.|.+.|.++|+.+. .|.........++...| ..++... -|.++.+ |....|......+.
T Consensus 887 ~GN~lAa~LSnGci~~LDaR~G~vIN------swrpmecdllqlaapsd-q~L~~sa-ldHslaVnWhaldgimh~q~kp 958 (1034)
T KOG4190|consen 887 KGNKLAAALSNGCIAILDARNGKVIN------SWRPMECDLLQLAAPSD-QALAQSA-LDHSLAVNWHALDGIMHLQDKP 958 (1034)
T ss_pred CcchhhHHhcCCcEEEEecCCCceec------cCCcccchhhhhcCchh-HHHHhhc-ccceeEeeehhcCCeeeeccCC
Confidence 4457778899999999999987643 33333333333333223 2333222 3566776 87665554333332
Q ss_pred CCCCeEEEEEecCCCEEEEEECCCcEEEEEC-CC---CcEEEEEe---CCCCeEEEEEc--CCEEEEEECCCcEEE
Q 001455 1004 KGTTIQAMAVVEDFIYLNYNSSASSLQIWLR-GT---QQKVGRIS---AGSKITSLLTA--NDIVLCGTETGLIKG 1070 (1074)
Q Consensus 1004 H~~~VtsLafSPDG~~LaSGS~DGtIrIWDl-~t---g~~l~tL~---~hs~VtsLa~d--g~~LaSGs~DG~IrI 1070 (1074)
...+..- .-.-|.-++++...+.+.+|.- .. ...+..+. -.+..+++++- +..+..|...|.|.+
T Consensus 959 ppepahf--lqsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 959 PPEPAHF--LQSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred CCcchhh--hhccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeeccccchhhccCCCCceee
Confidence 2221111 1123556677666666777741 11 11122222 22446666643 556778888888875
No 256
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.61 E-value=1.5e-05 Score=94.76 Aligned_cols=232 Identities=9% Similarity=-0.013 Sum_probs=138.0
Q ss_pred CcEEEEECCCCCeeEEEEeccCCCCEEEEEEcCCCCE--E-EEEeCCC--eEEEEEccCCceEEEEEeccCCCeEEEccC
Q 001455 814 GSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGES--L-LSGSADK--TIGVWQMVQRKLELIEVIATKEPIRKLDTY 888 (1074)
Q Consensus 814 GtVrIWDl~t~~~~~i~tl~gH~~~VtsLafSpdg~~--L-aSGS~DG--tIrIWDl~tg~~~~~~~~~h~~~V~s~s~d 888 (1074)
+.|.+.|.+++.. ..+......+.+-+|+|||+. + ++...+| .|.+.++.+|+...............|+|+
T Consensus 165 ~~l~~~d~dG~~~---~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPD 241 (428)
T PRK01029 165 GELWSVDYDGQNL---RPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPR 241 (428)
T ss_pred ceEEEEcCCCCCc---eEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECCC
Confidence 4677778776653 334445566778899999985 3 2443343 577778887765433322222223468999
Q ss_pred CCeEEEEec-CC--e--EEEEeCCC----ceeeeec-C-CCeEEEEEe-CCE-EEEEE-CCCcEEEEE--ccC-Cceeee
Q 001455 889 GKTIFASTQ-GH--R--MKVIDSSR----TLKDIYR-S-KGIKSMSVV-QGK-IYIGC-MDSSIQELA--VSN-NVEREI 951 (1074)
Q Consensus 889 g~~L~sgS~-Dg--t--I~VWDl~~----~l~~l~~-~-~~V~sLa~s-dgk-LlaGs-~DgsI~IwD--l~t-g~~~~i 951 (1074)
|+.|+..+. +| . +..|++.. ....+.. . .......|+ ||+ ++..+ .+|...+|. +.. +...
T Consensus 242 G~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~-- 319 (428)
T PRK01029 242 KKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSP-- 319 (428)
T ss_pred CCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccce--
Confidence 998887653 22 3 34466542 2222332 2 223567786 776 55444 456555554 432 1111
Q ss_pred ccccccccCCCCCeEEEEEcCCceEEEEEecCC--CeEEEEECCCCCeEEEccCCCCCeEEEEEecCCCEEEEEEC---C
Q 001455 952 KAPFKSWRLQSKPINSLVVYKDWLYSASSSVEG--SNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSS---A 1026 (1074)
Q Consensus 952 ~~~~r~~~~h~~~I~sL~~spd~i~las~S~dD--gtI~IWDl~t~~~i~~l~gH~~~VtsLafSPDG~~LaSGS~---D 1026 (1074)
+.+......+....++|++..++..+..+ ..|.+||..++...... .....+....|+|||++|+..+. .
T Consensus 320 ----~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt-~~~~~~~~p~wSpDG~~L~f~~~~~g~ 394 (428)
T PRK01029 320 ----RLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLT-TSPENKESPSWAIDSLHLVYSAGNSNE 394 (428)
T ss_pred ----EEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEcc-CCCCCccceEECCCCCEEEEEECCCCC
Confidence 11122334566788999998777554333 47999999888765443 33345778999999998875443 3
Q ss_pred CcEEEEECCCCcEEEEEeCCCCeEEEEEc
Q 001455 1027 SSLQIWLRGTQQKVGRISAGSKITSLLTA 1055 (1074)
Q Consensus 1027 GtIrIWDl~tg~~l~tL~~hs~VtsLa~d 1055 (1074)
+.|++||+.+++........+.+...+|+
T Consensus 395 ~~L~~vdl~~g~~~~Lt~~~g~~~~p~Ws 423 (428)
T PRK01029 395 SELYLISLITKKTRKIVIGSGEKRFPSWG 423 (428)
T ss_pred ceEEEEECCCCCEEEeecCCCcccCceec
Confidence 56888898887765444444444445554
No 257
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.60 E-value=1.4e-07 Score=120.17 Aligned_cols=222 Identities=9% Similarity=0.111 Sum_probs=151.0
Q ss_pred CCCcEEEEEEe--CCEEEEEECCCcEEEEECCCCCeeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEccCCce
Q 001455 793 CSGAVTALIYY--KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKL 870 (1074)
Q Consensus 793 H~~~VtsLafS--~~~LaSGs~DGtVrIWDl~t~~~~~i~tl~gH~~~VtsLafSpdg~~LaSGS~DGtIrIWDl~tg~~ 870 (1074)
|-..|.++.-+ .-+.+||+.||.|++|....+.........|. ..|+.+.|+.+|..+..+..||.+.+|.+...
T Consensus 2207 ~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~-s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~pk-- 2283 (2439)
T KOG1064|consen 2207 PVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGN-SRVTRSRFNHQGNKFGIVDGDGDLSLWQASPK-- 2283 (2439)
T ss_pred ccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCc-chhhhhhhcccCCceeeeccCCceeecccCCc--
Confidence 34556666655 45899999999999999988765433443344 88999999999999999999999999998622
Q ss_pred EEEEEeccCCCeEEEccCCCeEEEEecCCeEEEEeCCCceeeeecCCCeEEEEEeCCEEEEEECCCcEEEEEccCCceee
Q 001455 871 ELIEVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSSRTLKDIYRSKGIKSMSVVQGKIYIGCMDSSIQELAVSNNVERE 950 (1074)
Q Consensus 871 ~~~~~~~h~~~V~s~s~dg~~L~sgS~DgtI~VWDl~~~l~~l~~~~~V~sLa~sdgkLlaGs~DgsI~IwDl~tg~~~~ 950 (1074)
.......|......|..-+..+++.+.. +.++.+.+||.--.....
T Consensus 2284 ~~~s~qchnk~~~Df~Fi~s~~~tag~s----------------------------------~d~~n~~lwDtl~~~~~s 2329 (2439)
T KOG1064|consen 2284 PYTSWQCHNKALSDFRFIGSLLATAGRS----------------------------------SDNRNVCLWDTLLPPMNS 2329 (2439)
T ss_pred ceeccccCCccccceeeeehhhhccccC----------------------------------CCCCcccchhcccCcccc
Confidence 2223334444444443333444433211 234555666543311111
Q ss_pred eccccccccCCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEccCCCCCeEEEEEecCCCEEEEEECCCcEE
Q 001455 951 IKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQ 1030 (1074)
Q Consensus 951 i~~~~r~~~~h~~~I~sL~~spd~i~las~S~dDgtI~IWDl~t~~~i~~l~gH~~~VtsLafSPDG~~LaSGS~DGtIr 1030 (1074)
. +. ..|....+++++-|....+++++ .+|.|.+||++..+.++.+.. +. ...++++|+..|.|+
T Consensus 2330 ~---v~--~~H~~gaT~l~~~P~~qllisgg-r~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ik 2393 (2439)
T KOG1064|consen 2330 L---VH--TCHDGGATVLAYAPKHQLLISGG-RKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIK 2393 (2439)
T ss_pred e---ee--eecCCCceEEEEcCcceEEEecC-CcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccceE
Confidence 1 01 45678889999999999999887 778999999998877766543 33 567899999999999
Q ss_pred EEECCCCcEEEEEeCCCC------eEEEE--Ec-CCEEEEEECCCc
Q 001455 1031 IWLRGTQQKVGRISAGSK------ITSLL--TA-NDIVLCGTETGL 1067 (1074)
Q Consensus 1031 IWDl~tg~~l~tL~~hs~------VtsLa--~d-g~~LaSGs~DG~ 1067 (1074)
||++.....++++...+. +.... .+ .+.|++++.||+
T Consensus 2394 Iw~~s~~~ll~~~p~e~ak~gfFr~~g~Q~~v~~~nrifsCgad~~ 2439 (2439)
T KOG1064|consen 2394 IWRLSEFGLLHTFPSEHAKQGFFRNIGMQINVGQCNRIFSCGADGT 2439 (2439)
T ss_pred EEEccccchhhcCchhhcccchhhhcCceeeeccCceEEEecCCCC
Confidence 999999888888764321 22222 12 457888888874
No 258
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=98.60 E-value=2.4e-07 Score=113.98 Aligned_cols=138 Identities=19% Similarity=0.228 Sum_probs=114.0
Q ss_pred EEEEEECCCcEEEEECCCCCeeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEccCCceEEEEEeccCCCeEEE
Q 001455 806 LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATKEPIRKL 885 (1074)
Q Consensus 806 ~LaSGs~DGtVrIWDl~t~~~~~i~tl~gH~~~VtsLafSpdg~~LaSGS~DGtIrIWDl~tg~~~~~~~~~h~~~V~s~ 885 (1074)
++++|+.-|.|.+|+....+ .+. .+.||.+.|.++.|+.||.+++|+|+|.++|+|++++++.......+|...|...
T Consensus 147 ~i~~gsv~~~iivW~~~~dn-~p~-~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~ 224 (967)
T KOG0974|consen 147 YIASGSVFGEIIVWKPHEDN-KPI-RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWAC 224 (967)
T ss_pred EEEeccccccEEEEeccccC-Ccc-eecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEE
Confidence 79999999999999998433 223 5789999999999999999999999999999999999876665667899999876
Q ss_pred ccCCCeEEEEecCCeEEEEeCCCceee-eec--CCCeEEEEEeCCE--EEEEECCCcEEEEEccC
Q 001455 886 DTYGKTIFASTQGHRMKVIDSSRTLKD-IYR--SKGIKSMSVVQGK--IYIGCMDSSIQELAVSN 945 (1074)
Q Consensus 886 s~dg~~L~sgS~DgtI~VWDl~~~l~~-l~~--~~~V~sLa~sdgk--LlaGs~DgsI~IwDl~t 945 (1074)
..+.+.+++++.|.+.++|+.+..... +.. .+.+..++++.+. .++++.|+.+++||+.+
T Consensus 225 ~~~~n~i~t~gedctcrvW~~~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 225 CFLPNRIITVGEDCTCRVWGVNGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred EeccceeEEeccceEEEEEecccceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 555559999999999999987743333 322 4669999998443 67899999999999865
No 259
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.59 E-value=7.1e-07 Score=96.91 Aligned_cols=194 Identities=13% Similarity=0.115 Sum_probs=130.4
Q ss_pred EEEEEe--CCEEEEEECCCcEEEEECCCCCeeEEEEeccCCCCEEEEEEcCCCC-EEEEEeCCCeEEEEEcc-CCceEEE
Q 001455 798 TALIYY--KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGE-SLLSGSADKTIGVWQMV-QRKLELI 873 (1074)
Q Consensus 798 tsLafS--~~~LaSGs~DGtVrIWDl~t~~~~~i~tl~gH~~~VtsLafSpdg~-~LaSGS~DGtIrIWDl~-tg~~~~~ 873 (1074)
.++.|+ +..++++-.+|.+.+-+......+..+++++|.-..+...|+.... .+++||.|+.+..||++ .++....
T Consensus 125 lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~ 204 (339)
T KOG0280|consen 125 LSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWH 204 (339)
T ss_pred eEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeee
Confidence 456666 4579999999999977766655555668899999999999986655 47899999999999999 4555555
Q ss_pred EEeccCCCeEEEc---cCCCeEEEEecCCeEEEEeCCCceeeee---cCCCeEEEEEe---CCEEEEEECCCcEEEEEcc
Q 001455 874 EVIATKEPIRKLD---TYGKTIFASTQGHRMKVIDSSRTLKDIY---RSKGIKSMSVV---QGKIYIGCMDSSIQELAVS 944 (1074)
Q Consensus 874 ~~~~h~~~V~s~s---~dg~~L~sgS~DgtI~VWDl~~~l~~l~---~~~~V~sLa~s---dgkLlaGs~DgsI~IwDl~ 944 (1074)
...-|...|.++. +.+.++++|+.|..|++||.+...+.+. -.++|+.+... .++++++|-.+-.++.+..
T Consensus 205 n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~ 284 (339)
T KOG0280|consen 205 NSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNGAKILDSS 284 (339)
T ss_pred cceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCccccceEEEEecchhhhHHHHHHHhcCceEEEec
Confidence 5667888888874 5567999999999999999984433333 35779888884 4556666666667777776
Q ss_pred CCceeeeccccccccCCCCCeEEEEEcCCceEEEEEecCCCeEE-EEEC
Q 001455 945 NNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIK-EWRR 992 (1074)
Q Consensus 945 tg~~~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S~dDgtI~-IWDl 992 (1074)
.+... +.........|..-...-.+.....++++++.-|+.++ +|-.
T Consensus 285 ~~~~e-~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~ 332 (339)
T KOG0280|consen 285 DKVLE-FQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLH 332 (339)
T ss_pred ccccc-hheeeeccccccceeeccccccccceeeeeeccccceeeeeee
Confidence 64432 11111222333333332223222245565554555544 5543
No 260
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.56 E-value=1.3e-06 Score=96.48 Aligned_cols=239 Identities=13% Similarity=0.134 Sum_probs=156.2
Q ss_pred CeeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcc-CCceEEEEEeccCCCeEE--EccCCCeEEEEecCCeE
Q 001455 825 SAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMV-QRKLELIEVIATKEPIRK--LDTYGKTIFASTQGHRM 901 (1074)
Q Consensus 825 ~~~~i~tl~gH~~~VtsLafSpdg~~LaSGS~DGtIrIWDl~-tg~~~~~~~~~h~~~V~s--~s~dg~~L~sgS~DgtI 901 (1074)
+...+..++||.+.|+....-|..+-+++.+.|.++|||--+ .++.-.........++++ +......+++|-.+|++
T Consensus 13 kp~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtv 92 (404)
T KOG1409|consen 13 KPELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTV 92 (404)
T ss_pred chhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceE
Confidence 334567788999999999998988889999999999999543 344332222333444554 45666788999999999
Q ss_pred EEEeCCCce------eee-ecCCCeEEEEEe--CCEEEEEECCCcEEEEEccCCceeeeccccccccCCCCCeEEEEEcC
Q 001455 902 KVIDSSRTL------KDI-YRSKGIKSMSVV--QGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYK 972 (1074)
Q Consensus 902 ~VWDl~~~l------~~l-~~~~~V~sLa~s--dgkLlaGs~DgsI~IwDl~tg~~~~i~~~~r~~~~h~~~I~sL~~sp 972 (1074)
.-+.+.... +.. .+...+..+.|+ ...+++.+.|..+.---.+.+....-+ .+ ..+-+.+.+.-
T Consensus 93 tefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y----~~---~~~~t~~~~d~ 165 (404)
T KOG1409|consen 93 TEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGY----NF---ETPASALQFDA 165 (404)
T ss_pred EEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccce----Ee---eccCCCCceee
Confidence 988876221 111 123457777776 444777887877654444443221100 00 00000111100
Q ss_pred CceEEEEEecCCCeEEEEE--CCCCCeEEEccCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCcE-EEEEeCC-CC
Q 001455 973 DWLYSASSSVEGSNIKEWR--RHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQK-VGRISAG-SK 1048 (1074)
Q Consensus 973 d~i~las~S~dDgtI~IWD--l~t~~~i~~l~gH~~~VtsLafSPDG~~LaSGS~DGtIrIWDl~tg~~-l~tL~~h-s~ 1048 (1074)
. +...+. ..|.|..-. ...-..+.++.+|.+.+++++|.|..+.+.+|..|..|.+||+.-++- ...+.+| +.
T Consensus 166 ~--~~fvGd-~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~k 242 (404)
T KOG1409|consen 166 L--YAFVGD-HSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDK 242 (404)
T ss_pred E--EEEecc-cccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhh
Confidence 0 111111 123333332 344556888999999999999999999999999999999999765444 5667777 44
Q ss_pred eEEEEEc--CCEEEEEECCCcEEEEec
Q 001455 1049 ITSLLTA--NDIVLCGTETGLIKGWIP 1073 (1074)
Q Consensus 1049 VtsLa~d--g~~LaSGs~DG~IrIWdi 1073 (1074)
|..+..- -+.+++++.||.|-+|++
T Consensus 243 V~~l~~~~~t~~l~S~~edg~i~~w~m 269 (404)
T KOG1409|consen 243 VQALSYAQHTRQLISCGEDGGIVVWNM 269 (404)
T ss_pred hhhhhhhhhheeeeeccCCCeEEEEec
Confidence 7776643 568999999999999986
No 261
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.50 E-value=5.2e-05 Score=89.14 Aligned_cols=256 Identities=12% Similarity=0.091 Sum_probs=155.8
Q ss_pred EEEeCCEEEEEECCCcEEEEECCCCCeeEEEEeccCCCCEEE-EEEcCCCCEEEEEeCCCeEEEEEccCCceEEEEEecc
Q 001455 800 LIYYKGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTS-FSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIAT 878 (1074)
Q Consensus 800 LafS~~~LaSGs~DGtVrIWDl~t~~~~~i~tl~gH~~~Vts-LafSpdg~~LaSGS~DGtIrIWDl~tg~~~~~~~~~h 878 (1074)
+...++.++.++.+|.+..+|.++++. +...+.. +.+.+ ... .+..++.++.+|.+..+|..+|+.........
T Consensus 116 ~~v~~~~v~v~~~~g~l~ald~~tG~~--~W~~~~~-~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~ 190 (394)
T PRK11138 116 VTVAGGKVYIGSEKGQVYALNAEDGEV--AWQTKVA-GEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDV 190 (394)
T ss_pred cEEECCEEEEEcCCCEEEEEECCCCCC--cccccCC-CceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCC
Confidence 445578888899999999999998865 3443322 22221 111 24457778889999999999998765443321
Q ss_pred CCC-e---EEEccCCCeEEEEecCCeEEEEeCCCceeeee----cC---CC------e-EEEEEeCCEEEEEECCCcEEE
Q 001455 879 KEP-I---RKLDTYGKTIFASTQGHRMKVIDSSRTLKDIY----RS---KG------I-KSMSVVQGKIYIGCMDSSIQE 940 (1074)
Q Consensus 879 ~~~-V---~s~s~dg~~L~sgS~DgtI~VWDl~~~l~~l~----~~---~~------V-~sLa~sdgkLlaGs~DgsI~I 940 (1074)
... . .+-...+..++.++.++.+..+|...-..... .. .. + .+-.+.++.+++++.+|.+..
T Consensus 191 ~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~a 270 (394)
T PRK11138 191 PSLTLRGESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVA 270 (394)
T ss_pred CcccccCCCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEE
Confidence 100 0 00011234577777888888887662111110 00 00 0 111234788888889999999
Q ss_pred EEccCCceeeeccccccccCCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEccCCC-CCeEEEEEecCCCE
Q 001455 941 LAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKG-TTIQAMAVVEDFIY 1019 (1074)
Q Consensus 941 wDl~tg~~~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S~dDgtI~IWDl~t~~~i~~l~gH~-~~VtsLafSPDG~~ 1019 (1074)
+|..+|+..-.. .......+....+.+|+.+ .+|.+..+|..+++.+-....-. ....+... .+.+
T Consensus 271 ld~~tG~~~W~~--------~~~~~~~~~~~~~~vy~~~---~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~ 337 (394)
T PRK11138 271 LDLRSGQIVWKR--------EYGSVNDFAVDGGRIYLVD---QNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGY 337 (394)
T ss_pred EECCCCCEEEee--------cCCCccCcEEECCEEEEEc---CCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCE
Confidence 999998754321 1111112333344444433 47889999998887543222111 11122222 2567
Q ss_pred EEEEECCCcEEEEECCCCcEEEEEeCC-CCeEE-EEEcCCEEEEEECCCcEEEEec
Q 001455 1020 LNYNSSASSLQIWLRGTQQKVGRISAG-SKITS-LLTANDIVLCGTETGLIKGWIP 1073 (1074)
Q Consensus 1020 LaSGS~DGtIrIWDl~tg~~l~tL~~h-s~Vts-La~dg~~LaSGs~DG~IrIWdi 1073 (1074)
|+.++.||.+++.|..+|+.+.+.+.+ ..+.+ -...++.|+.++.||.|+.++.
T Consensus 338 l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 338 LVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVVADDKLLIQARDGTVYAITR 393 (394)
T ss_pred EEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEEECCEEEEEeCCceEEEEeC
Confidence 788889999999999999998887754 33443 3345678999999999988764
No 262
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.48 E-value=0.0002 Score=80.48 Aligned_cols=257 Identities=8% Similarity=0.086 Sum_probs=161.3
Q ss_pred CCcEEEEECCCCCee-EEEEeccCCCCEEEEEEcCCCCEEEEEeCC---CeEEEEEccC--CceEEEEEe---ccCCCeE
Q 001455 813 DGSIKMWDIKKQSAM-LVWDVKEHRKAVTSFSLFEPGESLLSGSAD---KTIGVWQMVQ--RKLELIEVI---ATKEPIR 883 (1074)
Q Consensus 813 DGtVrIWDl~t~~~~-~i~tl~gH~~~VtsLafSpdg~~LaSGS~D---GtIrIWDl~t--g~~~~~~~~---~h~~~V~ 883 (1074)
+.-|++|++.+.... ....+-.+.+.++-++|+|+++.|+++-.+ |.|-.|.++. |++...... +....-.
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv 94 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV 94 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence 567999998854322 112223667889999999999999888654 6777766654 665433222 2222234
Q ss_pred EEccCCCeEEEEec-CCeEEEEeCCC------ceeeeecCC----------CeEEEEEe-CCEEEEEEC--CCcEEEEEc
Q 001455 884 KLDTYGKTIFASTQ-GHRMKVIDSSR------TLKDIYRSK----------GIKSMSVV-QGKIYIGCM--DSSIQELAV 943 (1074)
Q Consensus 884 s~s~dg~~L~sgS~-DgtI~VWDl~~------~l~~l~~~~----------~V~sLa~s-dgkLlaGs~--DgsI~IwDl 943 (1074)
+++.++++++++.. .|.|.++-++. ......+.. .+....+. +++++++.. -..|.+|++
T Consensus 95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~ 174 (346)
T COG2706 95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDL 174 (346)
T ss_pred EECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEc
Confidence 68899999988874 46899998751 112222221 26666674 887665443 346889999
Q ss_pred cCCceeeeccccccccCCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCC--CCe--EEEcc------CCCCCeEEEEE
Q 001455 944 SNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHR--KPQ--ISIAP------EKGTTIQAMAV 1013 (1074)
Q Consensus 944 ~tg~~~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S~dDgtI~IWDl~t--~~~--i~~l~------gH~~~VtsLaf 1013 (1074)
..|...... +.. -..+.....+.|||++.+.....-=+++|.+|..+. ++. ++.+. ....+...|..
T Consensus 175 ~dg~L~~~~-~~~--v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhi 251 (346)
T COG2706 175 DDGKLTPAD-PAE--VKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHI 251 (346)
T ss_pred ccCcccccc-ccc--cCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEE
Confidence 976654332 111 134667789999999998877765678999999776 321 22111 11235678889
Q ss_pred ecCCCEEEEEE-CCCcEEEEECCCC-cEEE---EEeCCCC-eEEEEE--cCCEEEEEECC-CcEEEEe
Q 001455 1014 VEDFIYLNYNS-SASSLQIWLRGTQ-QKVG---RISAGSK-ITSLLT--ANDIVLCGTET-GLIKGWI 1072 (1074)
Q Consensus 1014 SPDG~~LaSGS-~DGtIrIWDl~tg-~~l~---tL~~hs~-VtsLa~--dg~~LaSGs~D-G~IrIWd 1072 (1074)
+|||+||.++. ....|-+|.+... ..+. ....++. -+.+.+ +|++|++++.| ..|.+|.
T Consensus 252 s~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~ 319 (346)
T COG2706 252 SPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFE 319 (346)
T ss_pred CCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEE
Confidence 99999998876 3457888875432 2232 2223333 455544 58888877764 4577765
No 263
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.43 E-value=0.00018 Score=83.05 Aligned_cols=227 Identities=10% Similarity=0.084 Sum_probs=135.2
Q ss_pred CCCcEEEEECCCCCeeEEEEeccC-------CCCEEEEEEcCCCCEEEEEe-C-CCeEEEEEccCCceEEEEEeccCCCe
Q 001455 812 SDGSIKMWDIKKQSAMLVWDVKEH-------RKAVTSFSLFEPGESLLSGS-A-DKTIGVWQMVQRKLELIEVIATKEPI 882 (1074)
Q Consensus 812 ~DGtVrIWDl~t~~~~~i~tl~gH-------~~~VtsLafSpdg~~LaSGS-~-DGtIrIWDl~tg~~~~~~~~~h~~~V 882 (1074)
.+..|.+||..+.+. +.++.-- ......++++|||++|+... . +..|.+.|+.+++.......+....+
T Consensus 75 ~~d~V~v~D~~t~~~--~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~v 152 (352)
T TIGR02658 75 RTDYVEVIDPQTHLP--IADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHI 152 (352)
T ss_pred CCCEEEEEECccCcE--EeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEE
Confidence 588999999999865 4554321 22334789999999988665 3 78999999999886554333222222
Q ss_pred EEEccCCCeEEEEecCCeEEEEeCC--Ccee----eeecC--CCe--EEEEEe-CCEEEEEECCCcEEEEEccCCceeee
Q 001455 883 RKLDTYGKTIFASTQGHRMKVIDSS--RTLK----DIYRS--KGI--KSMSVV-QGKIYIGCMDSSIQELAVSNNVEREI 951 (1074)
Q Consensus 883 ~s~s~dg~~L~sgS~DgtI~VWDl~--~~l~----~l~~~--~~V--~sLa~s-dgkLlaGs~DgsI~IwDl~tg~~~~i 951 (1074)
...+... ..+.+.||......+. +... .+... ..+ +..-++ +|+.+-.+..|.|.+.|+........
T Consensus 153 y~t~e~~--~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~eG~V~~id~~~~~~~~~ 230 (352)
T TIGR02658 153 FPTANDT--FFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYTGKIFQIDLSSGDAKFL 230 (352)
T ss_pred EEecCCc--cEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecCCeEEEEecCCCcceec
Confidence 2211111 1122333333222221 1100 01001 000 001133 67755555559999999755432211
Q ss_pred cccccccc-------CCCCCeEEEEEcCCceEEEEEe---------cCCCeEEEEECCCCCeEEEccCCCCCeEEEEEec
Q 001455 952 KAPFKSWR-------LQSKPINSLVVYKDWLYSASSS---------VEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVE 1015 (1074)
Q Consensus 952 ~~~~r~~~-------~h~~~I~sL~~spd~i~las~S---------~dDgtI~IWDl~t~~~i~~l~gH~~~VtsLafSP 1015 (1074)
.+...+. .....+.-+++++++..+.... ..++.|.++|..+++.+..+.. +..+..++++|
T Consensus 231 -~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v-G~~~~~iavS~ 308 (352)
T TIGR02658 231 -PAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL-GHEIDSINVSQ 308 (352)
T ss_pred -ceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC-CCceeeEEECC
Confidence 1111100 1122334489998877666532 1225899999999998877643 45789999999
Q ss_pred CCC-EEEEEE-CCCcEEEEECCCCcEEEEEe
Q 001455 1016 DFI-YLNYNS-SASSLQIWLRGTQQKVGRIS 1044 (1074)
Q Consensus 1016 DG~-~LaSGS-~DGtIrIWDl~tg~~l~tL~ 1044 (1074)
||+ +|++.. .++.|.++|..+++.+.++.
T Consensus 309 Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i~ 339 (352)
T TIGR02658 309 DAKPLLYALSTGDKTLYIFDAETGKELSSVN 339 (352)
T ss_pred CCCeEEEEeCCCCCcEEEEECcCCeEEeeec
Confidence 999 777665 67889999999999999983
No 264
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.42 E-value=3.6e-05 Score=91.42 Aligned_cols=210 Identities=9% Similarity=0.017 Sum_probs=126.5
Q ss_pred CCCCcEEEEEEe--CCEEEEEECC---CcEEEEECCCCCeeEEEEeccCCCCEEEEEEcCCCCEEE-EEeCCC--eEEEE
Q 001455 792 KCSGAVTALIYY--KGLLCSGFSD---GSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLL-SGSADK--TIGVW 863 (1074)
Q Consensus 792 gH~~~VtsLafS--~~~LaSGs~D---GtVrIWDl~t~~~~~i~tl~gH~~~VtsLafSpdg~~La-SGS~DG--tIrIW 863 (1074)
.|.+.+....|+ ++.|+..+.+ ..|.+||+.+++...+. ...+.+....|+|||+.|+ +.+.+| .|.+|
T Consensus 196 ~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~---~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~ 272 (430)
T PRK00178 196 QSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQIT---NFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVM 272 (430)
T ss_pred cCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEcc---CCCCCcCCeEECCCCCEEEEEEccCCCceEEEE
Confidence 456788999999 4467655543 36899999988654333 3334456789999999876 555555 58888
Q ss_pred EccCCceEEEEEeccCCC--eEEEccCCCeEEEEec-CC--eEEEEeCC-Cceeeeec-CCCeEEEEEe-CCE-EEEEE-
Q 001455 864 QMVQRKLELIEVIATKEP--IRKLDTYGKTIFASTQ-GH--RMKVIDSS-RTLKDIYR-SKGIKSMSVV-QGK-IYIGC- 933 (1074)
Q Consensus 864 Dl~tg~~~~~~~~~h~~~--V~s~s~dg~~L~sgS~-Dg--tI~VWDl~-~~l~~l~~-~~~V~sLa~s-dgk-LlaGs- 933 (1074)
|+.++..... ..+... -..|+++|+.++..+. ++ .|+++|+. +....+.. ........|+ +|+ ++...
T Consensus 273 d~~~~~~~~l--t~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Spdg~~i~~~~~ 350 (430)
T PRK00178 273 DLASRQLSRV--TNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNARPRLSADGKTLVMVHR 350 (430)
T ss_pred ECCCCCeEEc--ccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEc
Confidence 9988765432 222222 2358899998876653 33 57777775 33333322 2223345665 666 43333
Q ss_pred CCC--cEEEEEccCCceeeeccccccccCCCCCeEEEEEcCCceEEEEEecCCC--eEEEEECCCCCeEEEccCCCCCeE
Q 001455 934 MDS--SIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGS--NIKEWRRHRKPQISIAPEKGTTIQ 1009 (1074)
Q Consensus 934 ~Dg--sI~IwDl~tg~~~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S~dDg--tI~IWDl~t~~~i~~l~gH~~~Vt 1009 (1074)
.++ .|.+||+.++....+.. ........++|++..++..+.+++ .+.+++...+. .+.+..+.+.+.
T Consensus 351 ~~~~~~l~~~dl~tg~~~~lt~--------~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~~-~~~l~~~~g~~~ 421 (430)
T PRK00178 351 QDGNFHVAAQDLQRGSVRILTD--------TSLDESPSVAPNGTMLIYATRQQGRGVLMLVSINGRV-RLPLPTAQGEVR 421 (430)
T ss_pred cCCceEEEEEECCCCCEEEccC--------CCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCc-eEECcCCCCCcC
Confidence 233 58889998876543311 111124478999887765554443 46666765443 334444555677
Q ss_pred EEEEec
Q 001455 1010 AMAVVE 1015 (1074)
Q Consensus 1010 sLafSP 1015 (1074)
..+|+|
T Consensus 422 ~p~ws~ 427 (430)
T PRK00178 422 EPSWSP 427 (430)
T ss_pred CCccCC
Confidence 777776
No 265
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.41 E-value=0.00015 Score=95.04 Aligned_cols=251 Identities=13% Similarity=0.052 Sum_probs=136.1
Q ss_pred EEEEEe--CC-EEEEEECCCcEEEEECCCCCeeEEEEecc--C------------CCCEEEEEEcCCCCEEEEEe-CCCe
Q 001455 798 TALIYY--KG-LLCSGFSDGSIKMWDIKKQSAMLVWDVKE--H------------RKAVTSFSLFEPGESLLSGS-ADKT 859 (1074)
Q Consensus 798 tsLafS--~~-~LaSGs~DGtVrIWDl~t~~~~~i~tl~g--H------------~~~VtsLafSpdg~~LaSGS-~DGt 859 (1074)
..++++ ++ .+++-+.++.|++||..+.. +..+.+ . -.....+++++++..|+.+. ..+.
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~---i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~ 647 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGNF---IVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHA 647 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCCCE---EEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCce
Confidence 346665 34 67777788899999987542 222221 1 12357899999888765544 4577
Q ss_pred EEEEEccCCceEEEEEeccCCCeEEEccCCCeEEEEecCCeEEEEeCCCceeeeecCCCeEEEEEe--CCEEE-EEECCC
Q 001455 860 IGVWQMVQRKLELIEVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSSRTLKDIYRSKGIKSMSVV--QGKIY-IGCMDS 936 (1074)
Q Consensus 860 IrIWDl~tg~~~~~~~~~h~~~V~s~s~dg~~L~sgS~DgtI~VWDl~~~l~~l~~~~~V~sLa~s--dgkLl-aGs~Dg 936 (1074)
|+++|..++......-.+.. .....+ +..+.. ..-.....++++ ++.++ +...++
T Consensus 648 Ir~id~~~~~V~tlag~G~~----g~~~~g------g~~~~~------------~~ln~P~gVa~dp~~g~LyVad~~~~ 705 (1057)
T PLN02919 648 LREIDFVNETVRTLAGNGTK----GSDYQG------GKKGTS------------QVLNSPWDVCFEPVNEKVYIAMAGQH 705 (1057)
T ss_pred EEEEecCCCEEEEEeccCcc----cCCCCC------ChhhhH------------hhcCCCeEEEEecCCCeEEEEECCCC
Confidence 89999877643211100000 000000 000000 000111234443 33332 233445
Q ss_pred cEEEEEccCCceeeecccc--ccc------cCCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEccC-----
Q 001455 937 SIQELAVSNNVEREIKAPF--KSW------RLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPE----- 1003 (1074)
Q Consensus 937 sI~IwDl~tg~~~~i~~~~--r~~------~~h~~~I~sL~~spd~i~las~S~dDgtI~IWDl~t~~~i~~l~g----- 1003 (1074)
.|++||..++....+.... ... .........++++|++..+......++.|++||..++.......+
T Consensus 706 ~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~ 785 (1057)
T PLN02919 706 QIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFS 785 (1057)
T ss_pred eEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccC
Confidence 5555555443322110000 000 001234556888888764444444677899998876542211100
Q ss_pred ----------------CCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCcEEEEEeCC--------------CCeEEEE
Q 001455 1004 ----------------KGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAG--------------SKITSLL 1053 (1074)
Q Consensus 1004 ----------------H~~~VtsLafSPDG~~LaSGS~DGtIrIWDl~tg~~l~tL~~h--------------s~VtsLa 1053 (1074)
.......++++++|..+++-+.++.|++||..++........+ ....+++
T Consensus 786 ~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIa 865 (1057)
T PLN02919 786 DNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLA 865 (1057)
T ss_pred cccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEE
Confidence 0113468899999999999999999999999887654322111 1245555
Q ss_pred E--cCCEEEEEECCCcEEEEec
Q 001455 1054 T--ANDIVLCGTETGLIKGWIP 1073 (1074)
Q Consensus 1054 ~--dg~~LaSGs~DG~IrIWdi 1073 (1074)
+ +|+.+++-+.+++|++||+
T Consensus 866 vd~dG~lyVaDt~Nn~Irvid~ 887 (1057)
T PLN02919 866 LGENGRLFVADTNNSLIRYLDL 887 (1057)
T ss_pred EeCCCCEEEEECCCCEEEEEEC
Confidence 5 4778888889999999986
No 266
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.39 E-value=4.5e-05 Score=88.32 Aligned_cols=271 Identities=12% Similarity=0.095 Sum_probs=156.3
Q ss_pred CCcEEEEEEe--CCEEEEEECCCcEEEEECCCCCeeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCC-------------
Q 001455 794 SGAVTALIYY--KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADK------------- 858 (1074)
Q Consensus 794 ~~~VtsLafS--~~~LaSGs~DGtVrIWDl~t~~~~~i~tl~gH~~~VtsLafSpdg~~LaSGS~DG------------- 858 (1074)
.-++..++|| |.+|++... ..|.+|+..... . +..+ .| ..|..+.|+|.+++|.|=+..+
T Consensus 32 ~~p~~~~~~SP~G~~l~~~~~-~~V~~~~g~~~~-~-l~~~-~~-~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~ 106 (561)
T COG5354 32 NWPVAYVSESPLGTYLFSEHA-AGVECWGGPSKA-K-LVRF-RH-PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTS 106 (561)
T ss_pred CcchhheeecCcchheehhhc-cceEEccccchh-h-eeee-ec-CCceecccCcccceeeeeccCCccChhhccCCccc
Confidence 4578888999 445655554 458899987764 2 3333 34 4599999999999999865433
Q ss_pred --eEEEEEccCCceEEEEEeccCC----CeEEEccCCCeEEEEecCCeEEEEeCCCceeeee----cCCCeEEEEEe---
Q 001455 859 --TIGVWQMVQRKLELIEVIATKE----PIRKLDTYGKTIFASTQGHRMKVIDSSRTLKDIY----RSKGIKSMSVV--- 925 (1074)
Q Consensus 859 --tIrIWDl~tg~~~~~~~~~h~~----~V~s~s~dg~~L~sgS~DgtI~VWDl~~~l~~l~----~~~~V~sLa~s--- 925 (1074)
.+.+||+.+|............ ++..|+.+..+++-. -...++|+++........ ...++....++
T Consensus 107 ~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~t~n~~~~p~~~lr~~gi~dFsisP~~ 185 (561)
T COG5354 107 KNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEITDNIEEHPFKNLRPVGILDFSISPEG 185 (561)
T ss_pred cCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEecCCccccCchhhccccceeeEEecCCC
Confidence 4999999998765433322211 255566555554443 334566666431111000 01223333332
Q ss_pred CCE-EE--E---EECCCcEEEEEccCCceeeec----------------------------------------------c
Q 001455 926 QGK-IY--I---GCMDSSIQELAVSNNVEREIK----------------------------------------------A 953 (1074)
Q Consensus 926 dgk-Ll--a---Gs~DgsI~IwDl~tg~~~~i~----------------------------------------------~ 953 (1074)
++. ++ + ++.++.+++|.+..+.....+ .
T Consensus 186 n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~ 265 (561)
T COG5354 186 NHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITER 265 (561)
T ss_pred CCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeeccc
Confidence 111 11 1 223333443333221110000 0
Q ss_pred ccccccCCCCCeEEEEEcCCceEEEEEe-cCCCeEEEEECCCCCeEEEccCCCCCeEEEEEecCCCEEEEEECC---CcE
Q 001455 954 PFKSWRLQSKPINSLVVYKDWLYSASSS-VEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSA---SSL 1029 (1074)
Q Consensus 954 ~~r~~~~h~~~I~sL~~spd~i~las~S-~dDgtI~IWDl~t~~~i~~l~gH~~~VtsLafSPDG~~LaSGS~D---GtI 1029 (1074)
..+.-..-..+|..++|.|.+...+..+ ..+..+.++|+... +...+ ....=+.+.|+|.++|++.++-| |.|
T Consensus 266 ~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~--Pe~~rNT~~fsp~~r~il~agF~nl~gni 342 (561)
T COG5354 266 SIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYF--PEQKRNTIFFSPHERYILFAGFDNLQGNI 342 (561)
T ss_pred ccceeccccccceeeeecccCCceeEEecccccceeecccccc-eEEec--CCcccccccccCcccEEEEecCCccccce
Confidence 0001112267888888877755444333 56778888988776 23222 33344578899999999998865 789
Q ss_pred EEEECCCCcE-EEEEeCCCC-eEEEEEcCCEEEEEEC------CCcEEEEec
Q 001455 1030 QIWLRGTQQK-VGRISAGSK-ITSLLTANDIVLCGTE------TGLIKGWIP 1073 (1074)
Q Consensus 1030 rIWDl~tg~~-l~tL~~hs~-VtsLa~dg~~LaSGs~------DG~IrIWdi 1073 (1074)
.+||...... +..+.+.+. ...++++++++.+... |..|+||++
T Consensus 343 ~i~~~~~rf~~~~~~~~~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v 394 (561)
T COG5354 343 EIFDPAGRFKVAGAFNGLNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDV 394 (561)
T ss_pred EEeccCCceEEEEEeecCCceEeeccCCceEEEecCCCcccccCcceEEEEe
Confidence 9999766544 447776644 4447777887766543 778999986
No 267
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.39 E-value=1.8e-05 Score=92.39 Aligned_cols=228 Identities=9% Similarity=0.155 Sum_probs=149.5
Q ss_pred EEEEEe-CCEEEEEECCCcEEEEECCCCCeeEEEEeccCCCCEEEEEEcCCCCE--EE-----EEeCCCeEEEEEccCCc
Q 001455 798 TALIYY-KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGES--LL-----SGSADKTIGVWQMVQRK 869 (1074)
Q Consensus 798 tsLafS-~~~LaSGs~DGtVrIWDl~t~~~~~i~tl~gH~~~VtsLafSpdg~~--La-----SGS~DGtIrIWDl~tg~ 869 (1074)
|+..|+ ++.+++--..+.|.+|+..+.+. ..+.+ |...|+.+.++|.+.. ++ ++|.-+.|+||....+.
T Consensus 129 W~~qfs~dEsl~arlv~nev~f~~~~~f~~-~~~kl--~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~ 205 (566)
T KOG2315|consen 129 WVPQFSIDESLAARLVSNEVQFYDLGSFKT-IQHKL--SVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEG 205 (566)
T ss_pred cccccccchhhhhhhhcceEEEEecCCccc-eeeee--eccceeeEEecCCCCCceEEEEccCCCCCCcEEEEecccccc
Confidence 688888 66666666667899999987432 33444 6788999999998443 44 35667789999876322
Q ss_pred eE----EEEEeccCCCeEEEccCCCe-EEEEe--c---------CCeEEEEeCCCc--eeeeecCCCeEEEEEe-CCE--
Q 001455 870 LE----LIEVIATKEPIRKLDTYGKT-IFAST--Q---------GHRMKVIDSSRT--LKDIYRSKGIKSMSVV-QGK-- 928 (1074)
Q Consensus 870 ~~----~~~~~~h~~~V~s~s~dg~~-L~sgS--~---------DgtI~VWDl~~~--l~~l~~~~~V~sLa~s-dgk-- 928 (1074)
.. ...+...+.....|...|.- |+.++ - ..+++++++.+. ...+...++|.++.|+ +|+
T Consensus 206 ~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF 285 (566)
T KOG2315|consen 206 QHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGREF 285 (566)
T ss_pred ccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCCCCceEEEECCCCCEE
Confidence 11 11111111112234444552 22221 1 236888888743 3344457889999997 665
Q ss_pred -EEEEECCCcEEEEEccCCceeeeccccccccCCCCCeEEEEEcCCceEEEEEe--cCCCeEEEEECCCCCeEEEccCCC
Q 001455 929 -IYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSS--VEGSNIKEWRRHRKPQISIAPEKG 1005 (1074)
Q Consensus 929 -LlaGs~DgsI~IwDl~tg~~~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S--~dDgtI~IWDl~t~~~i~~l~gH~ 1005 (1074)
++.|-.-..+.+||++..-. +....++-+++-|+|.|.+++-.+ .--|.|-+||..+.+++..+...
T Consensus 286 ~VvyGfMPAkvtifnlr~~~v---------~df~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~- 355 (566)
T KOG2315|consen 286 AVVYGFMPAKVTIFNLRGKPV---------FDFPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAA- 355 (566)
T ss_pred EEEEecccceEEEEcCCCCEe---------EeCCCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccC-
Confidence 33377788899999987322 233367788899999887665443 33478999999888877766443
Q ss_pred CCeEEEEEecCCCEEEEEEC------CCcEEEEECCCCcEE
Q 001455 1006 TTIQAMAVVEDFIYLNYNSS------ASSLQIWLRGTQQKV 1040 (1074)
Q Consensus 1006 ~~VtsLafSPDG~~LaSGS~------DGtIrIWDl~tg~~l 1040 (1074)
.-+-+.|+|||+|++|+.. |+.++||+.. |..+
T Consensus 356 -~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt-G~~l 394 (566)
T KOG2315|consen 356 -NTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT-GSLL 394 (566)
T ss_pred -CceEEEEcCCCcEEEEEeccccEEecCCeEEEEec-Ccee
Confidence 3466889999999999874 6889999953 3443
No 268
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.37 E-value=3.8e-05 Score=91.94 Aligned_cols=211 Identities=12% Similarity=0.053 Sum_probs=124.2
Q ss_pred CCCcEEEEEEe-C-CEEEEEEC-CC--cEEEEECCCCCeeEEEEeccCCCCEEEEEEcCCCCEEE-EEeCCCe--EEEEE
Q 001455 793 CSGAVTALIYY-K-GLLCSGFS-DG--SIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLL-SGSADKT--IGVWQ 864 (1074)
Q Consensus 793 H~~~VtsLafS-~-~~LaSGs~-DG--tVrIWDl~t~~~~~i~tl~gH~~~VtsLafSpdg~~La-SGS~DGt--IrIWD 864 (1074)
+...+.+..|+ + ..|+..+. ++ .|.+||+.+++...+..+.+ .....+|+|||+.|+ +.+.+|. |.+||
T Consensus 216 ~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g---~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d 292 (448)
T PRK04792 216 SPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPG---INGAPRFSPDGKKLALVLSKDGQPEIYVVD 292 (448)
T ss_pred CCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCC---CcCCeeECCCCCEEEEEEeCCCCeEEEEEE
Confidence 45678889999 4 45665443 33 58888998876544433333 344689999999876 4566665 77788
Q ss_pred ccCCceEEEEEeccCCCeEEEccCCCeEEEEec-CC--eEEEEeCC-Cceeeee-cCCCeEEEEEe-CCE-EEE-EECCC
Q 001455 865 MVQRKLELIEVIATKEPIRKLDTYGKTIFASTQ-GH--RMKVIDSS-RTLKDIY-RSKGIKSMSVV-QGK-IYI-GCMDS 936 (1074)
Q Consensus 865 l~tg~~~~~~~~~h~~~V~s~s~dg~~L~sgS~-Dg--tI~VWDl~-~~l~~l~-~~~~V~sLa~s-dgk-Lla-Gs~Dg 936 (1074)
+.+++............-..|+++++.++..+. ++ .|+++|+. +....+. .........|+ +|+ ++. +..++
T Consensus 293 l~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g 372 (448)
T PRK04792 293 IATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPDGRSMIMVNRTNG 372 (448)
T ss_pred CCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCCcCeeECCCCCEEEEEEecCC
Confidence 888765332211111122358899998876653 33 56666765 3333332 22223345675 776 433 33344
Q ss_pred --cEEEEEccCCceeeeccccccccCCCCCeEEEEEcCCceEEEEEecCCC--eEEEEECCCCCeEEEccCCCCCeEEEE
Q 001455 937 --SIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGS--NIKEWRRHRKPQISIAPEKGTTIQAMA 1012 (1074)
Q Consensus 937 --sI~IwDl~tg~~~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S~dDg--tI~IWDl~t~~~i~~l~gH~~~VtsLa 1012 (1074)
.|.++|+.++....+.. . .......++|++..++.....++ .+.+++.+ +...+.+..+.+.+...+
T Consensus 373 ~~~I~~~dl~~g~~~~lt~-------~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~-G~~~~~l~~~~g~~~~p~ 443 (448)
T PRK04792 373 KFNIARQDLETGAMQVLTS-------T-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSID-GRFKARLPAGQGEVKSPA 443 (448)
T ss_pred ceEEEEEECCCCCeEEccC-------C-CCCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEECcCCCCCcCCCc
Confidence 45667877765433211 0 11123368899887765544444 36667764 444555656666677788
Q ss_pred Eec
Q 001455 1013 VVE 1015 (1074)
Q Consensus 1013 fSP 1015 (1074)
|+|
T Consensus 444 Wsp 446 (448)
T PRK04792 444 WSP 446 (448)
T ss_pred cCC
Confidence 887
No 269
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=6.8e-06 Score=93.53 Aligned_cols=251 Identities=12% Similarity=0.110 Sum_probs=173.9
Q ss_pred CCCCcEEEEEEe-CCEEEEEECCCcEEEEECCC-CCeeEEEEeccCCCCEEEEEEcCCCCEEEEEeC-CCeEEEEEccCC
Q 001455 792 KCSGAVTALIYY-KGLLCSGFSDGSIKMWDIKK-QSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSA-DKTIGVWQMVQR 868 (1074)
Q Consensus 792 gH~~~VtsLafS-~~~LaSGs~DGtVrIWDl~t-~~~~~i~tl~gH~~~VtsLafSpdg~~LaSGS~-DGtIrIWDl~tg 868 (1074)
-|.+.|+.+... -+++.+++.||.++.|.-.. .-.+.+..+..|-+.|.+++.+-+|..+.|++. |..++++|+.+-
T Consensus 7 mhrd~i~hv~~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~ 86 (558)
T KOG0882|consen 7 MHRDVITHVFPTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF 86 (558)
T ss_pred cccceeeeEeeehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc
Confidence 588999999888 78999999999999998665 222345667789999999999999999999888 999999999875
Q ss_pred ceE-EEEEeccCCCeEEEccCCC---eEEEE-ecCCeEEEEeCCCce--eee---ecCCCeEEEEEe--CCEEEEEECCC
Q 001455 869 KLE-LIEVIATKEPIRKLDTYGK---TIFAS-TQGHRMKVIDSSRTL--KDI---YRSKGIKSMSVV--QGKIYIGCMDS 936 (1074)
Q Consensus 869 ~~~-~~~~~~h~~~V~s~s~dg~---~L~sg-S~DgtI~VWDl~~~l--~~l---~~~~~V~sLa~s--dgkLlaGs~Dg 936 (1074)
... ..........+..+...|. .+++. -.++.+.++|-.... ... .+..+|.++.+. ...+++....|
T Consensus 87 DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~g 166 (558)
T KOG0882|consen 87 DMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISG 166 (558)
T ss_pred chhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccc
Confidence 432 1122222333333333332 33333 367899999976322 111 235578888885 33467778889
Q ss_pred cEEEEEccC------Cce-eeec--cccccccCCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEcc-----
Q 001455 937 SIQELAVSN------NVE-REIK--APFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAP----- 1002 (1074)
Q Consensus 937 sI~IwDl~t------g~~-~~i~--~~~r~~~~h~~~I~sL~~spd~i~las~S~dDgtI~IWDl~t~~~i~~l~----- 1002 (1074)
.|.-|.... +.. ...+ .....+........++.++|++..+.+.+ +|..|++++..+|..++.+.
T Consensus 167 mVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~-~DrkVR~F~~KtGklvqeiDE~~t~ 245 (558)
T KOG0882|consen 167 MVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLN-PDRKVRGFVFKTGKLVQEIDEVLTD 245 (558)
T ss_pred eeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccC-cccEEEEEEeccchhhhhhhccchh
Confidence 999998874 110 0000 00111223356778999999999988887 78999999998887544332
Q ss_pred ---------------------------CCCC-CeEEEEEecCCCEEEEEECCCcEEEEECCCCcEEEEEe
Q 001455 1003 ---------------------------EKGT-TIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRIS 1044 (1074)
Q Consensus 1003 ---------------------------gH~~-~VtsLafSPDG~~LaSGS~DGtIrIWDl~tg~~l~tL~ 1044 (1074)
.|.. .-+.+.|...|++|+-|+-=| |++.++.+++.++.+-
T Consensus 246 ~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ri~g 314 (558)
T KOG0882|consen 246 AQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVRILG 314 (558)
T ss_pred hhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEEEEec
Confidence 1211 345678899999999988666 8999999988877664
No 270
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.35 E-value=0.00082 Score=75.71 Aligned_cols=247 Identities=13% Similarity=0.164 Sum_probs=161.9
Q ss_pred CCCCcEEEEEEe-CC-EEEEEEC---CCcEEEEECCC--CCeeEEEEeccCCCCEEEEEEcCCCCEEEEEeC-CCeEEEE
Q 001455 792 KCSGAVTALIYY-KG-LLCSGFS---DGSIKMWDIKK--QSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSA-DKTIGVW 863 (1074)
Q Consensus 792 gH~~~VtsLafS-~~-~LaSGs~---DGtVrIWDl~t--~~~~~i~tl~gH~~~VtsLafSpdg~~LaSGS~-DGtIrIW 863 (1074)
.+.+.++-++|+ ++ .|.++.. +|.|..|.++. +....+.....-..+-+.++++++|++++++.. -|.|.++
T Consensus 37 ~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~ 116 (346)
T COG2706 37 AELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVY 116 (346)
T ss_pred cccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEE
Confidence 456788889999 33 5666654 47788887765 544433333333344488999999999887764 5789999
Q ss_pred EccC-CceEEE-EEeccCCC----------eE--EEccCCCeEEEEecC-CeEEEEeCCC-c-----eeeeecCCCeEEE
Q 001455 864 QMVQ-RKLELI-EVIATKEP----------IR--KLDTYGKTIFASTQG-HRMKVIDSSR-T-----LKDIYRSKGIKSM 922 (1074)
Q Consensus 864 Dl~t-g~~~~~-~~~~h~~~----------V~--s~s~dg~~L~sgS~D-gtI~VWDl~~-~-----l~~l~~~~~V~sL 922 (1074)
-++. |.+... ....|... +. .++|+++++++.+-. ..|.+|++.. . ...+..+.+.+.|
T Consensus 117 p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi 196 (346)
T COG2706 117 PLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHI 196 (346)
T ss_pred EcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceE
Confidence 8865 443221 22233332 22 378999999988744 4799999872 1 1223346678899
Q ss_pred EEe-CCEEE--EEECCCcEEEEEccC--Cceeeecccccccc---CCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCC
Q 001455 923 SVV-QGKIY--IGCMDSSIQELAVSN--NVEREIKAPFKSWR---LQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHR 994 (1074)
Q Consensus 923 a~s-dgkLl--aGs~DgsI~IwDl~t--g~~~~i~~~~r~~~---~h~~~I~sL~~spd~i~las~S~dDgtI~IWDl~t 994 (1074)
.|. +++++ ..--+++|.+|.... ++...++.. ..+. ........+..+++|.++.++......|.+|.+..
T Consensus 197 ~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i-~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~ 275 (346)
T COG2706 197 VFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTI-DTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDP 275 (346)
T ss_pred EEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeee-ccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcC
Confidence 996 88843 356789999999887 333332211 1111 12456678899999999998775556788887543
Q ss_pred --CCe--EEEccCCCCCeEEEEEecCCCEEEEEECC-CcEEEEEC--CCCcE
Q 001455 995 --KPQ--ISIAPEKGTTIQAMAVVEDFIYLNYNSSA-SSLQIWLR--GTQQK 1039 (1074)
Q Consensus 995 --~~~--i~~l~gH~~~VtsLafSPDG~~LaSGS~D-GtIrIWDl--~tg~~ 1039 (1074)
+.+ +.....+....+...|+|+|++|++++.+ ..|.+|.+ .+|+.
T Consensus 276 ~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L 327 (346)
T COG2706 276 DGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRL 327 (346)
T ss_pred CCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceE
Confidence 332 23333455567899999999999988854 56888864 45544
No 271
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.33 E-value=1.6e-06 Score=99.71 Aligned_cols=241 Identities=12% Similarity=0.102 Sum_probs=154.4
Q ss_pred EEEEeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEccCC-----ceEEE-EEeccCCCeEEEccCCCeEEEEecCCeE
Q 001455 828 LVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQR-----KLELI-EVIATKEPIRKLDTYGKTIFASTQGHRM 901 (1074)
Q Consensus 828 ~i~tl~gH~~~VtsLafSpdg~~LaSGS~DGtIrIWDl~tg-----~~~~~-~~~~h~~~V~s~s~dg~~L~sgS~DgtI 901 (1074)
.+..+.||+..|..++--.+.+.+++++.|++|++|.++.. ...+. ....|+.+|..+..-.+.-..++.||.|
T Consensus 727 rL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~ScD~gi 806 (1034)
T KOG4190|consen 727 RLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASCDGGI 806 (1034)
T ss_pred eeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeeccCcc
Confidence 45678899999999887778888999999999999998752 11122 3447888888765444443456778999
Q ss_pred EEEeCC--Cceeee-e--c---CCCeEEEEEeCCE-EEEE-ECCCcEEEEEccCCceeeeccccccccCCCCCeEEEEEc
Q 001455 902 KVIDSS--RTLKDI-Y--R---SKGIKSMSVVQGK-IYIG-CMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVY 971 (1074)
Q Consensus 902 ~VWDl~--~~l~~l-~--~---~~~V~sLa~sdgk-LlaG-s~DgsI~IwDl~tg~~~~i~~~~r~~~~h~~~I~sL~~s 971 (1074)
++||.- +.+..+ . . ...|.|+.-.+.. +++| +...+|+++|.+.++....... ..-.+.+..+.++++.
T Consensus 807 HlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kV-cna~~Pna~~R~iaVa 885 (1034)
T KOG4190|consen 807 HLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKV-CNAPGPNALTRAIAVA 885 (1034)
T ss_pred eeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEe-ccCCCCchheeEEEec
Confidence 999964 222211 1 1 2235555444555 4455 5788999999998664322100 1112335668889999
Q ss_pred CCceEEEEEecCCCeEEEEECCCCCeEEEccCCCCCeEEEEEecCCCEEEEEECCCcEEE-EECCCCcEEEEEeCCC-Ce
Q 001455 972 KDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQI-WLRGTQQKVGRISAGS-KI 1049 (1074)
Q Consensus 972 pd~i~las~S~dDgtI~IWDl~t~~~i~~l~gH~~~VtsLafSPDG~~LaSGS~DGtIrI-WDl~tg~~l~tL~~hs-~V 1049 (1074)
+.|.+++.+- ..|.|.+.|.++|..+.....-......++ .|..+.++....|.++.+ |...+|....+.+... +.
T Consensus 886 ~~GN~lAa~L-SnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~saldHslaVnWhaldgimh~q~kpppepa 963 (1034)
T KOG4190|consen 886 DKGNKLAAAL-SNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQDKPPPEPA 963 (1034)
T ss_pred cCcchhhHHh-cCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcCCeeeeccCCCCcch
Confidence 9988887654 568999999999997765544333333332 366678888888999999 9877776655555331 11
Q ss_pred EEEEEcCCEEEEEECCCcEEEE
Q 001455 1050 TSLLTANDIVLCGTETGLIKGW 1071 (1074)
Q Consensus 1050 tsLa~dg~~LaSGs~DG~IrIW 1071 (1074)
.-+.--|..++++.....+.||
T Consensus 964 hflqsvgpSLV~a~~Gn~lgVY 985 (1034)
T KOG4190|consen 964 HFLQSVGPSLVTAQNGNILGVY 985 (1034)
T ss_pred hhhhccCceeEEeccCcEEEEE
Confidence 1111114445555555555555
No 272
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.32 E-value=4.1e-06 Score=99.57 Aligned_cols=270 Identities=10% Similarity=0.051 Sum_probs=168.1
Q ss_pred CCcEEEEEEe--CCEEEEEECCCcEEEEECCCCCeeEEEEeccCC--CCEEEEEEcCCCC--E-EEEEeCCCeEEEEEcc
Q 001455 794 SGAVTALIYY--KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHR--KAVTSFSLFEPGE--S-LLSGSADKTIGVWQMV 866 (1074)
Q Consensus 794 ~~~VtsLafS--~~~LaSGs~DGtVrIWDl~t~~~~~i~tl~gH~--~~VtsLafSpdg~--~-LaSGS~DGtIrIWDl~ 866 (1074)
.+++.++..+ +.-+|.++.-| +.+-|+...-..+ .-+ .|. -.|-.+.|+|... + +++.+..+ -.+|++.
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~pp-r~l-~h~tpw~vad~qws~h~a~~~wiVsts~qk-aiiwnlA 99 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPP-RWL-HHITPWQVADVQWSPHPAKPYWIVSTSNQK-AIIWNLA 99 (1081)
T ss_pred cCcccceeeccccchhhhhhhcC-eEEEeccCCCCCc-eee-eccCcchhcceecccCCCCceeEEecCcch-hhhhhhh
Confidence 4566777777 55577777666 4466766532211 111 232 2466778887543 3 66666554 4689886
Q ss_pred CC--ceEEEEEeccCCCeEEEccC---CCeEEEEecCCeEEEEeCCCceeeee----cCCCeEEEEEe--CCEEEEEECC
Q 001455 867 QR--KLELIEVIATKEPIRKLDTY---GKTIFASTQGHRMKVIDSSRTLKDIY----RSKGIKSMSVV--QGKIYIGCMD 935 (1074)
Q Consensus 867 tg--~~~~~~~~~h~~~V~s~s~d---g~~L~sgS~DgtI~VWDl~~~l~~l~----~~~~V~sLa~s--dgkLlaGs~D 935 (1074)
.. +.+.....+|...|+.+..+ ...+++++-|..+..||++..-..+. .+.....+.|. ++.+++.+..
T Consensus 100 ~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg 179 (1081)
T KOG0309|consen 100 KSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHG 179 (1081)
T ss_pred cCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccC
Confidence 43 33445667888899886544 44889999999999999984333222 24556677886 8889999999
Q ss_pred CcEEEEEccCCceeeeccccccccCCCCCeEEEEEcCCc-eEEEEEecCCCeEEEEECCCCCe-EEEccCCCCCeEEEEE
Q 001455 936 SSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDW-LYSASSSVEGSNIKEWRRHRKPQ-ISIAPEKGTTIQAMAV 1013 (1074)
Q Consensus 936 gsI~IwDl~tg~~~~i~~~~r~~~~h~~~I~sL~~spd~-i~las~S~dDgtI~IWDl~t~~~-i~~l~gH~~~VtsLaf 1013 (1074)
+.|.+||.+.|.... ....+|-..++.+.|..-- ..+.+. ..|++|++||...... .........+|+.-.+
T Consensus 180 ~~i~vwd~r~gs~pl-----~s~K~~vs~vn~~~fnr~~~s~~~s~-~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~ 253 (1081)
T KOG0309|consen 180 NDIFVWDLRKGSTPL-----CSLKGHVSSVNSIDFNRFKYSEIMSS-SNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRY 253 (1081)
T ss_pred CceEEEeccCCCcce-----EEecccceeeehHHHhhhhhhhhccc-CCCCceeeecccccccccceeccccCcceeccc
Confidence 999999999865422 2234456666776665432 122333 3689999999754321 1112233456777777
Q ss_pred ecCCC--EEEEEECCCcEEE---------EECC-CCcEEEEEeCCCC-eEEEEEc----------CC--EEEEEECCCcE
Q 001455 1014 VEDFI--YLNYNSSASSLQI---------WLRG-TQQKVGRISAGSK-ITSLLTA----------ND--IVLCGTETGLI 1068 (1074)
Q Consensus 1014 SPDG~--~LaSGS~DGtIrI---------WDl~-tg~~l~tL~~hs~-VtsLa~d----------g~--~LaSGs~DG~I 1068 (1074)
.|-|. ++.---.+..+.+ |+.. ..+++++|.||.. |..+.|- .+ .|++-+.|.++
T Consensus 254 ~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~l 333 (1081)
T KOG0309|consen 254 LPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTL 333 (1081)
T ss_pred cccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCce
Confidence 77443 3322222334444 4433 3467999999954 5555442 11 89999999999
Q ss_pred EEEec
Q 001455 1069 KGWIP 1073 (1074)
Q Consensus 1069 rIWdi 1073 (1074)
++|-+
T Consensus 334 rlWpI 338 (1081)
T KOG0309|consen 334 RLWPI 338 (1081)
T ss_pred Eeeec
Confidence 99965
No 273
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.26 E-value=0.0004 Score=74.84 Aligned_cols=218 Identities=16% Similarity=0.063 Sum_probs=130.3
Q ss_pred CCCcEEEEECCCCCeeEEEEecc-C-CCCEEEEEEcCCCCEEEEEeCCCeEEEEEccCCceEEEEEeccCCCeEEEccCC
Q 001455 812 SDGSIKMWDIKKQSAMLVWDVKE-H-RKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATKEPIRKLDTYG 889 (1074)
Q Consensus 812 ~DGtVrIWDl~t~~~~~i~tl~g-H-~~~VtsLafSpdg~~LaSGS~DGtIrIWDl~tg~~~~~~~~~h~~~V~s~s~dg 889 (1074)
.+|+|..||..+++. +....- . .....+. ..+++..+++++.++.+..||..+|+............. .....+
T Consensus 1 ~~g~l~~~d~~tG~~--~W~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~-~~~~~~ 76 (238)
T PF13360_consen 1 DDGTLSALDPRTGKE--LWSYDLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISG-APVVDG 76 (238)
T ss_dssp -TSEEEEEETTTTEE--EEEEECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGS-GEEEET
T ss_pred CCCEEEEEECCCCCE--EEEEECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccc-eeeecc
Confidence 378999999988864 444422 1 1222221 234677788889999999999999987655444221111 124566
Q ss_pred CeEEEEecCCeEEEEeCC-Cceeee-ec-C----CC--eEEEEEeCCEEEEEECCCcEEEEEccCCceeeeccccccccC
Q 001455 890 KTIFASTQGHRMKVIDSS-RTLKDI-YR-S----KG--IKSMSVVQGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRL 960 (1074)
Q Consensus 890 ~~L~sgS~DgtI~VWDl~-~~l~~l-~~-~----~~--V~sLa~sdgkLlaGs~DgsI~IwDl~tg~~~~i~~~~r~~~~ 960 (1074)
..+++++.++.+..+|.. +...-. .. . .. .....+.++.++++..++.|..+|..+|+....... .. ..
T Consensus 77 ~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~-~~-~~ 154 (238)
T PF13360_consen 77 GRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPV-GE-PR 154 (238)
T ss_dssp TEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEES-ST-T-
T ss_pred cccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeec-CC-CC
Confidence 777888888899999965 322222 11 1 11 223333477788899999999999999887443211 00 00
Q ss_pred CCCC------e-EEEEEcCCceEEEEEecCCC-eEEEEECCCCCeEEEccCCCCCeEEEEEecCCCEEEEEECCCcEEEE
Q 001455 961 QSKP------I-NSLVVYKDWLYSASSSVEGS-NIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIW 1032 (1074)
Q Consensus 961 h~~~------I-~sL~~spd~i~las~S~dDg-tI~IWDl~t~~~i~~l~gH~~~VtsLafSPDG~~LaSGS~DGtIrIW 1032 (1074)
.... + ..+.+. ++ .+...+ .++ .+.+ |..++...-... ...+.. ...+++..++.++.++.|..|
T Consensus 155 ~~~~~~~~~~~~~~~~~~-~~-~v~~~~-~~g~~~~~-d~~tg~~~w~~~--~~~~~~-~~~~~~~~l~~~~~~~~l~~~ 227 (238)
T PF13360_consen 155 GSSPISSFSDINGSPVIS-DG-RVYVSS-GDGRVVAV-DLATGEKLWSKP--ISGIYS-LPSVDGGTLYVTSSDGRLYAL 227 (238)
T ss_dssp SS--EEEETTEEEEEECC-TT-EEEEEC-CTSSEEEE-ETTTTEEEEEEC--SS-ECE-CEECCCTEEEEEETTTEEEEE
T ss_pred CCcceeeecccccceEEE-CC-EEEEEc-CCCeEEEE-ECCCCCEEEEec--CCCccC-CceeeCCEEEEEeCCCEEEEE
Confidence 0111 1 233333 33 333333 344 4555 999988553222 222222 145678888888899999999
Q ss_pred ECCCCcEEEE
Q 001455 1033 LRGTQQKVGR 1042 (1074)
Q Consensus 1033 Dl~tg~~l~t 1042 (1074)
|..+|+.+-+
T Consensus 228 d~~tG~~~W~ 237 (238)
T PF13360_consen 228 DLKTGKVVWQ 237 (238)
T ss_dssp ETTTTEEEEE
T ss_pred ECCCCCEEeE
Confidence 9999988653
No 274
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.23 E-value=0.00044 Score=74.51 Aligned_cols=211 Identities=12% Similarity=0.025 Sum_probs=129.2
Q ss_pred CCCeEEEEEccCCceEEEEEecc-CCCeE-EEccCCCeEEEEecCCeEEEEeCC-Cceee-eecCCCeE-EEEEeCCEEE
Q 001455 856 ADKTIGVWQMVQRKLELIEVIAT-KEPIR-KLDTYGKTIFASTQGHRMKVIDSS-RTLKD-IYRSKGIK-SMSVVQGKIY 930 (1074)
Q Consensus 856 ~DGtIrIWDl~tg~~~~~~~~~h-~~~V~-s~s~dg~~L~sgS~DgtI~VWDl~-~~l~~-l~~~~~V~-sLa~sdgkLl 930 (1074)
.+|+|..||..+|+......... ..... ...+.+..+++++.++.+..||.. +...- ......+. .....++.++
T Consensus 1 ~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~v~ 80 (238)
T PF13360_consen 1 DDGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVVDGGRVY 80 (238)
T ss_dssp -TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEEETTEEE
T ss_pred CCCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceeeecccccc
Confidence 37899999999998776654422 22222 234477888888999999999985 33222 22222211 1244588899
Q ss_pred EEECCCcEEEEEccCCceeee-ccccccccCCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEccCCCCC--
Q 001455 931 IGCMDSSIQELAVSNNVEREI-KAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTT-- 1007 (1074)
Q Consensus 931 aGs~DgsI~IwDl~tg~~~~i-~~~~r~~~~h~~~I~sL~~spd~i~las~S~dDgtI~IWDl~t~~~i~~l~gH~~~-- 1007 (1074)
+++.++.++.+|..+|+..-. ...... ...........+.. ...++.. .++.+..+|..+|+.+-....+...
T Consensus 81 v~~~~~~l~~~d~~tG~~~W~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~--~~g~l~~~d~~tG~~~w~~~~~~~~~~ 156 (238)
T PF13360_consen 81 VGTSDGSLYALDAKTGKVLWSIYLTSSP-PAGVRSSSSPAVDG-DRLYVGT--SSGKLVALDPKTGKLLWKYPVGEPRGS 156 (238)
T ss_dssp EEETTSEEEEEETTTSCEEEEEEE-SSC-TCSTB--SEEEEET-TEEEEEE--TCSEEEEEETTTTEEEEEEESSTT-SS
T ss_pred cccceeeeEecccCCcceeeeecccccc-ccccccccCceEec-CEEEEEe--ccCcEEEEecCCCcEEEEeecCCCCCC
Confidence 888999999999999887543 111000 00011122233332 3333333 3688999999999886655443321
Q ss_pred --------eEEEEEecCCCEEEEEECCCc-EEEEECCCCcEEEEEeCCCCeEE-EEEcCCEEEEEECCCcEEEEec
Q 001455 1008 --------IQAMAVVEDFIYLNYNSSASS-LQIWLRGTQQKVGRISAGSKITS-LLTANDIVLCGTETGLIKGWIP 1073 (1074)
Q Consensus 1008 --------VtsLafSPDG~~LaSGS~DGt-IrIWDl~tg~~l~tL~~hs~Vts-La~dg~~LaSGs~DG~IrIWdi 1073 (1074)
+..-.+..++ .+..++.++. +.+ |..+++.+.... .+.+.. ...++..|+.++.+|.|..||+
T Consensus 157 ~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~-d~~tg~~~w~~~-~~~~~~~~~~~~~~l~~~~~~~~l~~~d~ 229 (238)
T PF13360_consen 157 SPISSFSDINGSPVISDG-RVYVSSGDGRVVAV-DLATGEKLWSKP-ISGIYSLPSVDGGTLYVTSSDGRLYALDL 229 (238)
T ss_dssp --EEEETTEEEEEECCTT-EEEEECCTSSEEEE-ETTTTEEEEEEC-SS-ECECEECCCTEEEEEETTTEEEEEET
T ss_pred cceeeecccccceEEECC-EEEEEcCCCeEEEE-ECCCCCEEEEec-CCCccCCceeeCCEEEEEeCCCEEEEEEC
Confidence 1122222345 6666777775 555 999999775444 333444 6677889999889999999986
No 275
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.22 E-value=0.00032 Score=90.61 Aligned_cols=262 Identities=13% Similarity=0.047 Sum_probs=158.7
Q ss_pred CCCcEEEEEEe--CCEEEEEECCCcEEEE----ECCCCCeeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcc
Q 001455 793 CSGAVTALIYY--KGLLCSGFSDGSIKMW----DIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMV 866 (1074)
Q Consensus 793 H~~~VtsLafS--~~~LaSGs~DGtVrIW----Dl~t~~~~~i~tl~gH~~~VtsLafSpdg~~LaSGS~DGtIrIWDl~ 866 (1074)
..+.|.++.|- .+.++.+..+|.|.+. +..+...+.+..+ ..+|.+++||||+..|+..+.+|++.+.+-
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~v---d~GI~a~~WSPD~Ella~vT~~~~l~~mt~- 149 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVGSV---DSGILAASWSPDEELLALVTGEGNLLLMTR- 149 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEEEE---cCcEEEEEECCCcCEEEEEeCCCEEEEEec-
Confidence 35788888888 4468999999999999 6666654444444 678999999999999998988999888752
Q ss_pred CCceEEEEEeccCCCeEEEccCCCeEEEEecCCeEEEEeCC-Cc---------------eeeeecCCCeEEEEEe-CCEE
Q 001455 867 QRKLELIEVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSS-RT---------------LKDIYRSKGIKSMSVV-QGKI 929 (1074)
Q Consensus 867 tg~~~~~~~~~h~~~V~s~s~dg~~L~sgS~DgtI~VWDl~-~~---------------l~~l~~~~~V~sLa~s-dgkL 929 (1074)
+........ +..-.......++++++..=.-|.-. ++ ...+.....-..++|- ||.+
T Consensus 150 ~fd~i~E~~------l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~y 223 (928)
T PF04762_consen 150 DFDPISEVP------LDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEY 223 (928)
T ss_pred cceEEEEee------cCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcE
Confidence 322221110 11111122234444433311111100 00 0001122345577786 8886
Q ss_pred EEEE----C---CCcEEEEEccCCceeeeccccccccCCCCCeEEEEEcCCceEEEEEec--CCCeEEEEECCCCCe---
Q 001455 930 YIGC----M---DSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSV--EGSNIKEWRRHRKPQ--- 997 (1074)
Q Consensus 930 laGs----~---DgsI~IwDl~tg~~~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S~--dDgtI~IWDl~t~~~--- 997 (1074)
++.+ . -..+++|+-. |.....-.+ -.+--.+++|.|.|.++++... +...|.+|..+.-+.
T Consensus 224 FAVss~~~~~~~~R~iRVy~Re-G~L~stSE~------v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF 296 (928)
T PF04762_consen 224 FAVSSVEPETGSRRVIRVYSRE-GELQSTSEP------VDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEF 296 (928)
T ss_pred EEEEEEEcCCCceeEEEEECCC-ceEEecccc------CCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeE
Confidence 6532 1 2578999876 333222111 1223356788899998887763 234677787654321
Q ss_pred EEEccCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCcEE--EEEeC--CCCeEEEEEc---CCEEEEEECCCcEEE
Q 001455 998 ISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKV--GRISA--GSKITSLLTA---NDIVLCGTETGLIKG 1070 (1074)
Q Consensus 998 i~~l~gH~~~VtsLafSPDG~~LaSGS~DGtIrIWDl~tg~~l--~tL~~--hs~VtsLa~d---g~~LaSGs~DG~IrI 1070 (1074)
.-.+......|..+.|++|+..||..-.|. |++|-..+.... +.+.. ...+..+.|+ +..|..++.+|.+..
T Consensus 297 ~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~ 375 (928)
T PF04762_consen 297 TLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEI 375 (928)
T ss_pred ecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEE
Confidence 111223456899999999999999987655 999998887652 33332 2335558888 447777777677765
Q ss_pred Ee
Q 001455 1071 WI 1072 (1074)
Q Consensus 1071 Wd 1072 (1074)
++
T Consensus 376 ~~ 377 (928)
T PF04762_consen 376 YD 377 (928)
T ss_pred EE
Confidence 43
No 276
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.19 E-value=0.00017 Score=77.95 Aligned_cols=230 Identities=8% Similarity=-0.087 Sum_probs=142.3
Q ss_pred CCEEEEEECCCcEEEEECCCCCeeEEEEeccCCCCEEEEEEcCCCC-EEEEEeCCCeEEEEEccCCceEEEEEec-cCCC
Q 001455 804 KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGE-SLLSGSADKTIGVWQMVQRKLELIEVIA-TKEP 881 (1074)
Q Consensus 804 ~~~LaSGs~DGtVrIWDl~t~~~~~i~tl~gH~~~VtsLafSpdg~-~LaSGS~DGtIrIWDl~tg~~~~~~~~~-h~~~ 881 (1074)
.++||.||.-|...+|...+.+. ..+....|...|+-+.=..+.+ .+.-++.|.++++.++.-+........+ ....
T Consensus 84 c~~la~gG~~g~fd~~~~~tn~~-h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~n 162 (344)
T KOG4532|consen 84 CVTLADGGASGQFDLFACNTNDG-HLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQN 162 (344)
T ss_pred ccEEEeccccceeeeecccCccc-ceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeecccccee
Confidence 45899999999999999987653 2333445555454332222333 2777889999999988765432211111 1111
Q ss_pred eEEEccCCCeEEEEecCCeEEEEeCCCce----e--eeecCCCeEEEEEe--CCEEEEEECCCcEEEEEccCCceeeecc
Q 001455 882 IRKLDTYGKTIFASTQGHRMKVIDSSRTL----K--DIYRSKGIKSMSVV--QGKIYIGCMDSSIQELAVSNNVEREIKA 953 (1074)
Q Consensus 882 V~s~s~dg~~L~sgS~DgtI~VWDl~~~l----~--~l~~~~~V~sLa~s--dgkLlaGs~DgsI~IwDl~tg~~~~i~~ 953 (1074)
-..+++++++.++++....|..|.+.... . .-.....-.+.+|+ +..++++..||++.|||++........
T Consensus 163 s~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~- 241 (344)
T KOG4532|consen 163 SLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAE- 241 (344)
T ss_pred eeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhh-
Confidence 22478999999999999999999987321 1 11123445677776 455777999999999999874322111
Q ss_pred ccccccCCCCCeEEEEEcCCceEEE-EEecCCCeEEEEECCCCCeEEEcc-------CCC-CCeEEEEEecCCCEEEEEE
Q 001455 954 PFKSWRLQSKPINSLVVYKDWLYSA-SSSVEGSNIKEWRRHRKPQISIAP-------EKG-TTIQAMAVVEDFIYLNYNS 1024 (1074)
Q Consensus 954 ~~r~~~~h~~~I~sL~~spd~i~la-s~S~dDgtI~IWDl~t~~~i~~l~-------gH~-~~VtsLafSPDG~~LaSGS 1024 (1074)
....-..|.+.+..+.|++.|..-+ -.+-.-+.+.+.|++++.-.+.+. .|. ..|..-.|+.++.-+.+.+
T Consensus 242 ~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~ 321 (344)
T KOG4532|consen 242 ISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKN 321 (344)
T ss_pred hcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCccccccc
Confidence 1122245788999999997654322 222233678999988876444332 222 2367777777666555554
Q ss_pred CCCcEEEEECCC
Q 001455 1025 SASSLQIWLRGT 1036 (1074)
Q Consensus 1025 ~DGtIrIWDl~t 1036 (1074)
++ .+.=|++.+
T Consensus 322 e~-~~ae~ni~s 332 (344)
T KOG4532|consen 322 EL-QGAEYNILS 332 (344)
T ss_pred ch-hhheeeccc
Confidence 33 244455444
No 277
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.18 E-value=3.6e-05 Score=91.36 Aligned_cols=232 Identities=10% Similarity=0.018 Sum_probs=150.8
Q ss_pred cCCCCCcEEEEEEe--CCEEEEEECCCcEEEEECCCCCeeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEccC
Q 001455 790 SHKCSGAVTALIYY--KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQ 867 (1074)
Q Consensus 790 ~~gH~~~VtsLafS--~~~LaSGs~DGtVrIWDl~t~~~~~i~tl~gH~~~VtsLafSpdg~~LaSGS~DGtIrIWDl~t 867 (1074)
..||++.|.-+.|+ ...+-|+..+|.|.||-+-.+..-.-..-...++.|.+++|+.+|..+...-.||.|.|=.++.
T Consensus 67 LeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdG 146 (1189)
T KOG2041|consen 67 LEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDG 146 (1189)
T ss_pred hccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeecc
Confidence 34999999999999 4468999999999999998775421111224567899999999999988888888887766654
Q ss_pred CceEEEEEeccCCCeEEEccCCCeEEEEecCCeEEEEeCCCce---------eeeec-----CCCeEEEEEe--------
Q 001455 868 RKLELIEVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSSRTL---------KDIYR-----SKGIKSMSVV-------- 925 (1074)
Q Consensus 868 g~~~~~~~~~h~~~V~s~s~dg~~L~sgS~DgtI~VWDl~~~l---------~~l~~-----~~~V~sLa~s-------- 925 (1074)
++.--....+..-.-..++++...++.+-.+|.+.+||..+.. ....+ +..+..+.|.
T Consensus 147 NRIwgKeLkg~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~ 226 (1189)
T KOG2041|consen 147 NRIWGKELKGQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVP 226 (1189)
T ss_pred ceecchhcchheccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCC
Confidence 4322111222211223478888888888889999999977321 11111 2235556652
Q ss_pred -CC-EEEEEECCCcEEEEEccCCceeeeccccccccCCCCCeEEEEEcCCceEEEEEecC-------C-CeEEEEECCCC
Q 001455 926 -QG-KIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVE-------G-SNIKEWRRHRK 995 (1074)
Q Consensus 926 -dg-kLlaGs~DgsI~IwDl~tg~~~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S~d-------D-gtI~IWDl~t~ 995 (1074)
+. .++.+-.+|.+++..-.+.....+ -..+-.+....|+++|..++.++.+ | +.|.+|. ..|
T Consensus 227 pdrP~lavcy~nGr~QiMR~eND~~Pvv-------~dtgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys-p~G 298 (1189)
T KOG2041|consen 227 PDRPRLAVCYANGRMQIMRSENDPEPVV-------VDTGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS-PYG 298 (1189)
T ss_pred CCCCEEEEEEcCceehhhhhcCCCCCeE-------EecccEeecceecCCCcEEEEccCcccccCccccceEEEec-cch
Confidence 22 255567778777765444322111 1124567788899998888766521 2 2455554 346
Q ss_pred CeEEEccCCCCCeEEEEEecCCCEEEEEECCCcEE
Q 001455 996 PQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQ 1030 (1074)
Q Consensus 996 ~~i~~l~gH~~~VtsLafSPDG~~LaSGS~DGtIr 1030 (1074)
..+.++...+..|++++|-..|-.++.+- |+.|+
T Consensus 299 ~i~gtlkvpg~~It~lsWEg~gLriA~Av-dsfiy 332 (1189)
T KOG2041|consen 299 HIVGTLKVPGSCITGLSWEGTGLRIAIAV-DSFIY 332 (1189)
T ss_pred hheEEEecCCceeeeeEEcCCceEEEEEe-cceEE
Confidence 77888888888999999987776655543 44444
No 278
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.18 E-value=0.00056 Score=78.69 Aligned_cols=190 Identities=11% Similarity=0.079 Sum_probs=133.8
Q ss_pred EEcCCCCEEEEEeCCCeEEEEEccCCceEEEEEe-cc----CCCe-E-------EEc-cCCCeEEEEecCCeEEEEeCC-
Q 001455 843 SLFEPGESLLSGSADKTIGVWQMVQRKLELIEVI-AT----KEPI-R-------KLD-TYGKTIFASTQGHRMKVIDSS- 907 (1074)
Q Consensus 843 afSpdg~~LaSGS~DGtIrIWDl~tg~~~~~~~~-~h----~~~V-~-------s~s-~dg~~L~sgS~DgtI~VWDl~- 907 (1074)
..+.||+.++- +.-|.|.++|..+.+....... +. +.+. . .|+ .+|++++.++.+. ..+.+..
T Consensus 273 ~~nsDGkrIvF-q~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSRGk-aFi~~~~~ 350 (668)
T COG4946 273 NANSDGKRIVF-QNAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSRGK-AFIMRPWD 350 (668)
T ss_pred ccCCCCcEEEE-ecCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEecCc-EEEECCCC
Confidence 34578888653 3457799999988765443322 11 1111 1 133 4678888888754 5555544
Q ss_pred CceeeeecCCCeEEEEEe-CC-EEEEEECCC-cEEEEEccCCceeeeccccccccCCCCCeEEEEEcCCceEEEEEecCC
Q 001455 908 RTLKDIYRSKGIKSMSVV-QG-KIYIGCMDS-SIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEG 984 (1074)
Q Consensus 908 ~~l~~l~~~~~V~sLa~s-dg-kLlaGs~Dg-sI~IwDl~tg~~~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S~dD 984 (1074)
+....+....+|+-..+. ++ .++.|..|| .+-++|..+++...+ ...-..|.++..+++|.+++.+. +.
T Consensus 351 ~~~iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~-------e~~lg~I~av~vs~dGK~~vvaN-dr 422 (668)
T COG4946 351 GYSIQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRI-------EKDLGNIEAVKVSPDGKKVVVAN-DR 422 (668)
T ss_pred CeeEEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEe-------eCCccceEEEEEcCCCcEEEEEc-Cc
Confidence 444445556667777775 44 477788888 899999999886655 33467899999999999888765 55
Q ss_pred CeEEEEECCCCCeEEEccCCCCCeEEEEEecCCCEEEEEECCC----cEEEEECCCCcEEEE
Q 001455 985 SNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSAS----SLQIWLRGTQQKVGR 1042 (1074)
Q Consensus 985 gtI~IWDl~t~~~i~~l~gH~~~VtsLafSPDG~~LaSGS~DG----tIrIWDl~tg~~l~t 1042 (1074)
..+.+.|+.++.....-....+-|+.++|+|+++++|-+--+| .|+++|+.+++....
T Consensus 423 ~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~v 484 (668)
T COG4946 423 FELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDV 484 (668)
T ss_pred eEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEe
Confidence 6788889999986655555667899999999999999876554 689999998877543
No 279
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.17 E-value=2.6e-05 Score=83.73 Aligned_cols=243 Identities=14% Similarity=0.136 Sum_probs=144.1
Q ss_pred EEEEEEe-CCEEEEEECCCcEEEEECCCCCe----------eEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEc
Q 001455 797 VTALIYY-KGLLCSGFSDGSIKMWDIKKQSA----------MLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQM 865 (1074)
Q Consensus 797 VtsLafS-~~~LaSGs~DGtVrIWDl~t~~~----------~~i~tl~gH~~~VtsLafSpdg~~LaSGS~DGtIrIWDl 865 (1074)
|+.+.+. +..|+++..++.+......++.+ .+.+.+..|.++-.+-+.+-.+..+++++.||.+.+.+.
T Consensus 39 ~~~~~~v~~~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~ 118 (319)
T KOG4714|consen 39 LSKVSLSAEYILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFST 118 (319)
T ss_pred EEEeechhhheeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEec
Confidence 6666666 55688888887776665543322 123344444443333333445667999999999999998
Q ss_pred cCCceEEEEEeccCCCe-------EEEccCCCeEEEEec-----CCeEEEEeCCCceeee---ecCCCeEEEEEe--CCE
Q 001455 866 VQRKLELIEVIATKEPI-------RKLDTYGKTIFASTQ-----GHRMKVIDSSRTLKDI---YRSKGIKSMSVV--QGK 928 (1074)
Q Consensus 866 ~tg~~~~~~~~~h~~~V-------~s~s~dg~~L~sgS~-----DgtI~VWDl~~~l~~l---~~~~~V~sLa~s--dgk 928 (1074)
+.-.. ..++.++ .++..+++.+.++.. -+..+.|+++...... .....|.+++.. ..+
T Consensus 119 ~~~~~-----~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~ 193 (319)
T KOG4714|consen 119 DKDLA-----LMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQH 193 (319)
T ss_pred hHHHh-----hhhhcccccccccccceeecccEEecCCcceEeeccceeeecccccccccccccccccchhhhCCccccc
Confidence 75211 1122222 123345555554432 2345666665222111 123447777763 333
Q ss_pred -EEEEECCCcEEEEEccCCceeeeccccccccCCCCCeEEEEEcCC-ceEEEEEecCCCeEEEEECCCCCeEEEccCCCC
Q 001455 929 -IYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKD-WLYSASSSVEGSNIKEWRRHRKPQISIAPEKGT 1006 (1074)
Q Consensus 929 -LlaGs~DgsI~IwDl~tg~~~~i~~~~r~~~~h~~~I~sL~~spd-~i~las~S~dDgtI~IWDl~t~~~i~~l~gH~~ 1006 (1074)
+++|+.||.+.+||.+... .|...+..|+.+|..+.|||. +..+++++ +||.+..||..+..+
T Consensus 194 ~v~cgt~dg~~~l~d~rn~~-----~p~S~l~ahk~~i~eV~FHpk~p~~Lft~s-edGslw~wdas~~~l--------- 258 (319)
T KOG4714|consen 194 LVCCGTDDGIVGLWDARNVA-----MPVSLLKAHKAEIWEVHFHPKNPEHLFTCS-EDGSLWHWDASTTFL--------- 258 (319)
T ss_pred EEEEecCCCeEEEEEccccc-----chHHHHHHhhhhhhheeccCCCchheeEec-CCCcEEEEcCCCceE---------
Confidence 6669999999999999852 345667889999999999975 45566665 899999999776211
Q ss_pred CeEEEEEecCCCEEEEEECCCcEEEEECCC----CcEEEEEeCC--CCeEEEEEcCCEEEEEECCCcEEEEec
Q 001455 1007 TIQAMAVVEDFIYLNYNSSASSLQIWLRGT----QQKVGRISAG--SKITSLLTANDIVLCGTETGLIKGWIP 1073 (1074)
Q Consensus 1007 ~VtsLafSPDG~~LaSGS~DGtIrIWDl~t----g~~l~tL~~h--s~VtsLa~dg~~LaSGs~DG~IrIWdi 1073 (1074)
..+++ ...+..|--.+ .-.+..+-.. ..|+++...|..|++|++-+.|++.+-
T Consensus 259 -----~i~~~---------~s~~s~WLsgD~v~s~i~i~~ll~~~~~SinsfDV~g~~lVcgtd~eaIyl~~~ 317 (319)
T KOG4714|consen 259 -----SISNQ---------ASVISSWLSGDPVKSRIEITSLLPSRSLSINSFDVLGPCLVCGTDAEAIYLTRH 317 (319)
T ss_pred -----EecCc---------cccccccccCCcccceEeeeccccccceeeeeeeccCceEEeccccceEEEecc
Confidence 11221 12244452111 1112222211 237777777999999999999998763
No 280
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.17 E-value=1.4e-05 Score=90.26 Aligned_cols=90 Identities=8% Similarity=0.058 Sum_probs=73.3
Q ss_pred CCCeEEEEECCCCCeEEEccCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCcEEEEEeC-CCC-eEEEEEc-CCEE
Q 001455 983 EGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISA-GSK-ITSLLTA-NDIV 1059 (1074)
Q Consensus 983 dDgtI~IWDl~t~~~i~~l~gH~~~VtsLafSPDG~~LaSGS~DGtIrIWDl~tg~~l~tL~~-hs~-VtsLa~d-g~~L 1059 (1074)
+...+.+|....+... ...||-.-++.++|+||+++|+++..|..|+|-....-..+..|.- |.. |..++.- ++.|
T Consensus 130 D~~~~di~s~~~~~~~-~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~~L 208 (390)
T KOG3914|consen 130 DVYSFDILSADSGRCE-PILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNYLL 208 (390)
T ss_pred CceeeeeecccccCcc-hhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCcee
Confidence 5567777776665543 4558999999999999999999999999999988777777777765 533 8888854 6678
Q ss_pred EEEECCCcEEEEec
Q 001455 1060 LCGTETGLIKGWIP 1073 (1074)
Q Consensus 1060 aSGs~DG~IrIWdi 1073 (1074)
+|||.|++|++||+
T Consensus 209 lS~sGD~tlr~Wd~ 222 (390)
T KOG3914|consen 209 LSGSGDKTLRLWDI 222 (390)
T ss_pred eecCCCCcEEEEec
Confidence 99999999999996
No 281
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.16 E-value=6.1e-06 Score=98.12 Aligned_cols=202 Identities=15% Similarity=0.205 Sum_probs=131.8
Q ss_pred CCCCCcEEEEEEe---CCEEEEEECCCcEEEEECCCCCeeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEccC
Q 001455 791 HKCSGAVTALIYY---KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQ 867 (1074)
Q Consensus 791 ~gH~~~VtsLafS---~~~LaSGs~DGtVrIWDl~t~~~~~i~tl~gH~~~VtsLafSpdg~~LaSGS~DGtIrIWDl~t 867 (1074)
+||+..|+.+.|. +..+++++.|..|..||+++... ++..+..-..+-+.++|+.....+...+..+.|++||.+.
T Consensus 111 hghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~-p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~ 189 (1081)
T KOG0309|consen 111 HGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHR-PFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRK 189 (1081)
T ss_pred ecCccceeccccCCCCCcceeeccccccceeeeccCCCc-ceeeeecccccCceeeecccCcchhhhccCCceEEEeccC
Confidence 5899999999999 56899999999999999998753 4455544455677899998777777777788899999998
Q ss_pred CceEEEEEeccCCCeEEEccC---CCeEEEEecCCeEEEEeCCCcee----eeecCCCeEEEEE-e--CCEEEE-EECCC
Q 001455 868 RKLELIEVIATKEPIRKLDTY---GKTIFASTQGHRMKVIDSSRTLK----DIYRSKGIKSMSV-V--QGKIYI-GCMDS 936 (1074)
Q Consensus 868 g~~~~~~~~~h~~~V~s~s~d---g~~L~sgS~DgtI~VWDl~~~l~----~l~~~~~V~sLa~-s--dgkLla-Gs~Dg 936 (1074)
|........+|...|..+..+ -..+.+.+.|++|+.||..+... .+.....|.--.+ + +|.++- --.+.
T Consensus 190 gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n 269 (1081)
T KOG0309|consen 190 GSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGN 269 (1081)
T ss_pred CCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeEeccccCCe
Confidence 876655566666666655433 34788999999999999874322 2223333433333 3 444332 11122
Q ss_pred cEEEEEccCCce----eeeccccccccCCCCCeEEEEEcC----------CceEEEEEecCCCeEEEEECCC
Q 001455 937 SIQELAVSNNVE----REIKAPFKSWRLQSKPINSLVVYK----------DWLYSASSSVEGSNIKEWRRHR 994 (1074)
Q Consensus 937 sI~IwDl~tg~~----~~i~~~~r~~~~h~~~I~sL~~sp----------d~i~las~S~dDgtI~IWDl~t 994 (1074)
.+.+++-++... .....+++.+.+|...|..+.+-. ....+++++ .|.++++|-+..
T Consensus 270 ~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWS-kD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 270 MVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWS-KDQTLRLWPIDS 340 (1081)
T ss_pred eeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEee-cCCceEeeeccH
Confidence 444444433111 112234556666665555444421 123568888 889999998753
No 282
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.14 E-value=0.00027 Score=82.57 Aligned_cols=256 Identities=10% Similarity=0.055 Sum_probs=145.4
Q ss_pred EEEEEe--CCEEEEEECCCcEEEEECCCCCeeEEEEeccCCCCEEEEEEcCCCCEEEEEeC-----------CCeEEEEE
Q 001455 798 TALIYY--KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSA-----------DKTIGVWQ 864 (1074)
Q Consensus 798 tsLafS--~~~LaSGs~DGtVrIWDl~t~~~~~i~tl~gH~~~VtsLafSpdg~~LaSGS~-----------DGtIrIWD 864 (1074)
+-+.|| |.||+|-..-| |.+|--.+-. .++.+ .|. .|.-+.|||+.++|+|-|. ...++|||
T Consensus 214 tyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~--r~~RF-~Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWD 288 (698)
T KOG2314|consen 214 TYVRWSPKGTYLVTFHKQG-IALWGGESFD--RIQRF-YHP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWD 288 (698)
T ss_pred eeEEecCCceEEEEEeccc-eeeecCccHH--HHHhc-cCC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEE
Confidence 457788 56888887776 6689766542 24444 465 4899999999999998653 25789999
Q ss_pred ccCCceEEEEEec----cCCCeEEEccCCCeEEEEecCCeEEEEeCCCc------------ee-----------eeec--
Q 001455 865 MVQRKLELIEVIA----TKEPIRKLDTYGKTIFASTQGHRMKVIDSSRT------------LK-----------DIYR-- 915 (1074)
Q Consensus 865 l~tg~~~~~~~~~----h~~~V~s~s~dg~~L~sgS~DgtI~VWDl~~~------------l~-----------~l~~-- 915 (1074)
+.+|......... ..-++..++.++.+++.... .+|.||+.... ++ ....
T Consensus 289 I~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe 367 (698)
T KOG2314|consen 289 IATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPE 367 (698)
T ss_pred ccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeecccccCCccccCcccCCCcceEEEEccc
Confidence 9999865443331 12245567888888887766 45777775410 00 0000
Q ss_pred ----CCCeEEEEEe----------------------CCEEEEEEC-----------CCcEEEEEccCCceeeeccccccc
Q 001455 916 ----SKGIKSMSVV----------------------QGKIYIGCM-----------DSSIQELAVSNNVEREIKAPFKSW 958 (1074)
Q Consensus 916 ----~~~V~sLa~s----------------------dgkLlaGs~-----------DgsI~IwDl~tg~~~~i~~~~r~~ 958 (1074)
...+.-+.+| +|..+|.-. -..+.|+.++.... |+...
T Consensus 368 ~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdI-----pve~v 442 (698)
T KOG2314|consen 368 TNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDI-----PVEVV 442 (698)
T ss_pred ccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCC-----Cceee
Confidence 0011111111 222221100 00111222211100 00000
Q ss_pred cCCCCCeEEEEEcCCceEEEEEec--CCCeEEEEECCCC----CeEEEccCCCCCeEEEEEecCCCEEEEEE---CCCcE
Q 001455 959 RLQSKPINSLVVYKDWLYSASSSV--EGSNIKEWRRHRK----PQISIAPEKGTTIQAMAVVEDFIYLNYNS---SASSL 1029 (1074)
Q Consensus 959 ~~h~~~I~sL~~spd~i~las~S~--dDgtI~IWDl~t~----~~i~~l~gH~~~VtsLafSPDG~~LaSGS---~DGtI 1029 (1074)
.-...|..+++-|.|...+..+. ...++.+|.+.+. .++..+. ....+.+.|+|.|++++.+. ..|.+
T Consensus 443 -elke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~d--k~~~N~vfwsPkG~fvvva~l~s~~g~l 519 (698)
T KOG2314|consen 443 -ELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELD--KKFANTVFWSPKGRFVVVAALVSRRGDL 519 (698)
T ss_pred -ecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhc--ccccceEEEcCCCcEEEEEEecccccce
Confidence 11456667777787765544432 2357888887632 1233332 24577899999999998765 56889
Q ss_pred EEEECCCCcEEE-EEeCCCCeEEEEEc--CCEEEEEECCCc
Q 001455 1030 QIWLRGTQQKVG-RISAGSKITSLLTA--NDIVLCGTETGL 1067 (1074)
Q Consensus 1030 rIWDl~tg~~l~-tL~~hs~VtsLa~d--g~~LaSGs~DG~ 1067 (1074)
.++|..-..... ....|...+.+.|| |+|+++++.-+.
T Consensus 520 ~F~D~~~a~~k~~~~~eh~~at~veWDPtGRYvvT~ss~wr 560 (698)
T KOG2314|consen 520 EFYDTDYADLKDTASPEHFAATEVEWDPTGRYVVTSSSSWR 560 (698)
T ss_pred EEEecchhhhhhccCccccccccceECCCCCEEEEeeehhh
Confidence 999977533322 22234446667776 889999887543
No 283
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.09 E-value=9.2e-05 Score=89.75 Aligned_cols=185 Identities=9% Similarity=-0.008 Sum_probs=127.5
Q ss_pred CCcEEEEEEeCCEEEEEECCCcEEEEECCCCCeeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEccCCceEEE
Q 001455 794 SGAVTALIYYKGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELI 873 (1074)
Q Consensus 794 ~~~VtsLafS~~~LaSGs~DGtVrIWDl~t~~~~~i~tl~gH~~~VtsLafSpdg~~LaSGS~DGtIrIWDl~tg~~~~~ 873 (1074)
.+.++|+++++..++-|+.+|.|++.+....- .+...|... ..+|.+++|||.||+|.|-.+.+++..+.
T Consensus 39 ~D~is~~av~~~~~~~GtH~g~v~~~~~~~~~----~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~ 108 (846)
T KOG2066|consen 39 NDAISCCAVHDKFFALGTHRGAVYLTTCQGNP----KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQ 108 (846)
T ss_pred hhHHHHHHhhcceeeeccccceEEEEecCCcc----ccccccccc------ccCCceEEEecCCCcEEEeeccCCcccee
Confidence 67889999999999999999999999987641 333456544 66899999999999999998888765544
Q ss_pred EEeccCCCeEEEccC-----CCeEEEEecCCeEEEEeCC--Cceee--e-ecCCCeEEEEEeCCEEEEEECCCcEEEEEc
Q 001455 874 EVIATKEPIRKLDTY-----GKTIFASTQGHRMKVIDSS--RTLKD--I-YRSKGIKSMSVVQGKIYIGCMDSSIQELAV 943 (1074)
Q Consensus 874 ~~~~h~~~V~s~s~d-----g~~L~sgS~DgtI~VWDl~--~~l~~--l-~~~~~V~sLa~sdgkLlaGs~DgsI~IwDl 943 (1074)
......-.+.+++|+ .+.+++|+.-| +.++.-+ +.... . ...+.|.++.|.. .+++=..|--|++||+
T Consensus 109 ~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~g-~lIAWand~Gv~vyd~ 186 (846)
T KOG2066|consen 109 YDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWRG-NLIAWANDDGVKVYDT 186 (846)
T ss_pred EecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEecC-cEEEEecCCCcEEEec
Confidence 333333233345555 45788998888 7777644 21111 2 2356799999864 4555444555999999
Q ss_pred cCCceeeeccccccccCCCCCeEEEEEcCCceEEEEEecCCCeEEEEECC
Q 001455 944 SNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRH 993 (1074)
Q Consensus 944 ~tg~~~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S~dDgtI~IWDl~ 993 (1074)
.+++.....++.+.-.........+.|.++...+++++ .+|++..++
T Consensus 187 ~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVIGW~---d~v~i~~I~ 233 (846)
T KOG2066|consen 187 PTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVIGWG---DSVKICSIK 233 (846)
T ss_pred cccceeeccCCCCCCCCcccCCCceEecCCCeEEEecC---CeEEEEEEe
Confidence 98776554333222222234456788888888888885 468888876
No 284
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.09 E-value=0.0011 Score=77.84 Aligned_cols=260 Identities=9% Similarity=0.032 Sum_probs=150.7
Q ss_pred EEeCCEEEEEECCCcEEEEECCCCCeeEEEEeccCC--C--------CEE-EEEEcCCCCEEEEEeCCCeEEEEEccCCc
Q 001455 801 IYYKGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHR--K--------AVT-SFSLFEPGESLLSGSADKTIGVWQMVQRK 869 (1074)
Q Consensus 801 afS~~~LaSGs~DGtVrIWDl~t~~~~~i~tl~gH~--~--------~Vt-sLafSpdg~~LaSGS~DGtIrIWDl~tg~ 869 (1074)
.+.++.+++++.+|.|.-+|..+++. +....-.. . .+. .+.. ++..++.++.+|.+..+|..+|+
T Consensus 66 vv~~~~vy~~~~~g~l~ald~~tG~~--~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~~~~g~l~ald~~tG~ 141 (394)
T PRK11138 66 AVAYNKVYAADRAGLVKALDADTGKE--IWSVDLSEKDGWFSKNKSALLSGGVTV--AGGKVYIGSEKGQVYALNAEDGE 141 (394)
T ss_pred EEECCEEEEECCCCeEEEEECCCCcE--eeEEcCCCcccccccccccccccccEE--ECCEEEEEcCCCEEEEEECCCCC
Confidence 44588899999999999999998864 33332111 0 000 1111 35567788889999999999998
Q ss_pred eEEEEEeccCCCeEE-EccCCCeEEEEecCCeEEEEeCCCceeeeec--CCC------eEEEEEeCCEEEEEECCCcEEE
Q 001455 870 LELIEVIATKEPIRK-LDTYGKTIFASTQGHRMKVIDSSRTLKDIYR--SKG------IKSMSVVQGKIYIGCMDSSIQE 940 (1074)
Q Consensus 870 ~~~~~~~~h~~~V~s-~s~dg~~L~sgS~DgtI~VWDl~~~l~~l~~--~~~------V~sLa~sdgkLlaGs~DgsI~I 940 (1074)
........ ..+.+ -...+..+++++.++.+..+|...-...... ... ..+-.+.++.++.++.+|.+..
T Consensus 142 ~~W~~~~~--~~~~ssP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a 219 (394)
T PRK11138 142 VAWQTKVA--GEALSRPVVSDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVSA 219 (394)
T ss_pred CcccccCC--CceecCCEEECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCCEEEE
Confidence 76543322 22221 1123566777888888998887622211111 111 0111223677888889999999
Q ss_pred EEccCCceeeeccccccccCCC-----CCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEccCCCCCeEEEEEec
Q 001455 941 LAVSNNVEREIKAPFKSWRLQS-----KPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVE 1015 (1074)
Q Consensus 941 wDl~tg~~~~i~~~~r~~~~h~-----~~I~sL~~spd~i~las~S~dDgtI~IWDl~t~~~i~~l~gH~~~VtsLafSP 1015 (1074)
+|..+|+..-............ ....+-....+.+++.+ .+|.+..+|..+|+.+-...- .....+. .
T Consensus 220 ~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~---~~g~l~ald~~tG~~~W~~~~--~~~~~~~--~ 292 (394)
T PRK11138 220 VLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALA---YNGNLVALDLRSGQIVWKREY--GSVNDFA--V 292 (394)
T ss_pred EEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEE---cCCeEEEEECCCCCEEEeecC--CCccCcE--E
Confidence 9999887533211000000000 00011112233333322 467899999988875533221 1111222 2
Q ss_pred CCCEEEEEECCCcEEEEECCCCcEEEEEeC--CCCeEEEEEcCCEEEEEECCCcEEEEec
Q 001455 1016 DFIYLNYNSSASSLQIWLRGTQQKVGRISA--GSKITSLLTANDIVLCGTETGLIKGWIP 1073 (1074)
Q Consensus 1016 DG~~LaSGS~DGtIrIWDl~tg~~l~tL~~--hs~VtsLa~dg~~LaSGs~DG~IrIWdi 1073 (1074)
++..++.++.+|.+..+|..+|+.+-.... +....+....+..|+.++.||.|++.|+
T Consensus 293 ~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~~g~l~v~~~~G~l~~ld~ 352 (394)
T PRK11138 293 DGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVLYNGYLVVGDSEGYLHWINR 352 (394)
T ss_pred ECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEEECCEEEEEeCCCEEEEEEC
Confidence 456777788899999999999988655432 1223333345778888999999887764
No 285
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.08 E-value=8.7e-06 Score=90.18 Aligned_cols=167 Identities=10% Similarity=0.093 Sum_probs=118.2
Q ss_pred ccCCCeEEEEecCCeEEEEeCCCc-eeeeecCCCeEEEEEe--CCEEEEEECCCcEEEEEccCCceeeeccccccccCCC
Q 001455 886 DTYGKTIFASTQGHRMKVIDSSRT-LKDIYRSKGIKSMSVV--QGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQS 962 (1074)
Q Consensus 886 s~dg~~L~sgS~DgtI~VWDl~~~-l~~l~~~~~V~sLa~s--dgkLlaGs~DgsI~IwDl~tg~~~~i~~~~r~~~~h~ 962 (1074)
...+.. ++.+.+..|-+-|+... .+.+.....|.++.|. ++-+++|+.+|.|..+|++.+.........+ -.|.
T Consensus 222 ni~gyh-fs~G~sqqv~L~nvetg~~qsf~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~r--lyh~ 298 (425)
T KOG2695|consen 222 NIMGYH-FSVGLSQQVLLTNVETGHQQSFQSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQR--LYHD 298 (425)
T ss_pred ccceee-ecccccceeEEEEeecccccccccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEE--EEcC
Confidence 344445 56667777888888743 3444455668888885 5557789999999999999853322111111 2357
Q ss_pred CCeEEEEEcC-CceEEEEEecCCCeEEEEECCCCCe---EEEccCCCCCeEEE--EEecCCCEEEEEECCCcEEEEECCC
Q 001455 963 KPINSLVVYK-DWLYSASSSVEGSNIKEWRRHRKPQ---ISIAPEKGTTIQAM--AVVEDFIYLNYNSSASSLQIWLRGT 1036 (1074)
Q Consensus 963 ~~I~sL~~sp-d~i~las~S~dDgtI~IWDl~t~~~---i~~l~gH~~~VtsL--afSPDG~~LaSGS~DGtIrIWDl~t 1036 (1074)
..|+++..-. ++.++.+.+ -+|+|++||.+--++ ++.+.||...-.-+ -..+....+++++.|...+||.+++
T Consensus 299 Ssvtslq~Lq~s~q~LmaS~-M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ 377 (425)
T KOG2695|consen 299 SSVTSLQILQFSQQKLMASD-MTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDS 377 (425)
T ss_pred cchhhhhhhccccceEeecc-CcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEeccc
Confidence 7888887766 666666555 678999999766555 88899996643333 3356778899999999999999999
Q ss_pred CcEEEEEeCCCC-----eEEEEEcC
Q 001455 1037 QQKVGRISAGSK-----ITSLLTAN 1056 (1074)
Q Consensus 1037 g~~l~tL~~hs~-----VtsLa~dg 1056 (1074)
|+.+.++..... +.+++|++
T Consensus 378 ghLl~tipf~~s~~e~d~~sv~~~s 402 (425)
T KOG2695|consen 378 GHLLCTIPFPYSASEVDIPSVAFDS 402 (425)
T ss_pred CceeeccCCCCccccccccceehhc
Confidence 999999986632 66677763
No 286
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.08 E-value=1.2e-05 Score=62.09 Aligned_cols=37 Identities=35% Similarity=0.539 Sum_probs=35.4
Q ss_pred EEEEeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 001455 828 LVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQ 864 (1074)
Q Consensus 828 ~i~tl~gH~~~VtsLafSpdg~~LaSGS~DGtIrIWD 864 (1074)
++.++.+|.++|++++|+|++..|+||+.|++|++||
T Consensus 3 ~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 3 CVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 5788999999999999999999999999999999997
No 287
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.07 E-value=0.0016 Score=77.52 Aligned_cols=208 Identities=14% Similarity=0.024 Sum_probs=121.1
Q ss_pred CcEEEEECCCCCeeEEEEeccCCCCEEEEEEcCCCCE-EEEEeC---CCeEEEEEccCCceEEEEEeccCCCeEEEccCC
Q 001455 814 GSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGES-LLSGSA---DKTIGVWQMVQRKLELIEVIATKEPIRKLDTYG 889 (1074)
Q Consensus 814 GtVrIWDl~t~~~~~i~tl~gH~~~VtsLafSpdg~~-LaSGS~---DGtIrIWDl~tg~~~~~~~~~h~~~V~s~s~dg 889 (1074)
..|.+=|.+.... ..+... +.+..-.|+|||+. ++..+. +..|.++|+.+|+...............|+|+|
T Consensus 169 ~~l~~~d~dg~~~---~~~~~~-~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG 244 (419)
T PRK04043 169 SNIVLADYTLTYQ---KVIVKG-GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDG 244 (419)
T ss_pred ceEEEECCCCCce---eEEccC-CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCC
Confidence 3555556655432 222222 37788999999985 554433 356889999888754433222222234689999
Q ss_pred CeEEEE-ecC--CeEEEEeCC-CceeeeecCCC-eEEEEEe-CCE-EEEEE-CCC--cEEEEEccCCceeeecccccccc
Q 001455 890 KTIFAS-TQG--HRMKVIDSS-RTLKDIYRSKG-IKSMSVV-QGK-IYIGC-MDS--SIQELAVSNNVEREIKAPFKSWR 959 (1074)
Q Consensus 890 ~~L~sg-S~D--gtI~VWDl~-~~l~~l~~~~~-V~sLa~s-dgk-LlaGs-~Dg--sI~IwDl~tg~~~~i~~~~r~~~ 959 (1074)
+.++.. +.+ ..|.++|+. +....+..... .....|+ ||+ ++..+ ..+ .|+++|+.++....+. +.
T Consensus 245 ~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt-----~~ 319 (419)
T PRK04043 245 SKLLLTMAPKGQPDIYLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVV-----FH 319 (419)
T ss_pred CEEEEEEccCCCcEEEEEECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCc-----cC
Confidence 876654 333 478888876 33344433332 2344575 775 44433 223 6888888877653331 11
Q ss_pred CCCCCeEEEEEcCCceEEEEEecCC--------CeEEEEECCCCCeEEEccCCCCCeEEEEEecCCCEEEEEECC-C--c
Q 001455 960 LQSKPINSLVVYKDWLYSASSSVEG--------SNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSA-S--S 1028 (1074)
Q Consensus 960 ~h~~~I~sL~~spd~i~las~S~dD--------gtI~IWDl~t~~~i~~l~gH~~~VtsLafSPDG~~LaSGS~D-G--t 1028 (1074)
+.. ...++|++.+++-.+..+ ..|.+.|+.++.... +.... ......|+|||+.|+..+.+ + .
T Consensus 320 --g~~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~-LT~~~-~~~~p~~SPDG~~I~f~~~~~~~~~ 393 (419)
T PRK04043 320 --GKN--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRR-LTANG-VNQFPRFSSDGGSIMFIKYLGNQSA 393 (419)
T ss_pred --CCc--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEE-CCCCC-CcCCeEECCCCCEEEEEEccCCcEE
Confidence 111 237899998876555332 367888888887543 33332 23368899999988776533 2 2
Q ss_pred EEEEECCC
Q 001455 1029 LQIWLRGT 1036 (1074)
Q Consensus 1029 IrIWDl~t 1036 (1074)
+.+.++..
T Consensus 394 L~~~~l~g 401 (419)
T PRK04043 394 LGIIRLNY 401 (419)
T ss_pred EEEEecCC
Confidence 44455543
No 288
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.04 E-value=0.0012 Score=83.56 Aligned_cols=229 Identities=14% Similarity=0.070 Sum_probs=137.1
Q ss_pred CCcEEEEEEe--CCEEEEEECCCcEEEEECCCCCeeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEccCCceE
Q 001455 794 SGAVTALIYY--KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLE 871 (1074)
Q Consensus 794 ~~~VtsLafS--~~~LaSGs~DGtVrIWDl~t~~~~~i~tl~gH~~~VtsLafSpdg~~LaSGS~DGtIrIWDl~tg~~~ 871 (1074)
.+.|.++.|. ++.++.+..+|.|.+-|..+.....+. .-.++|.+++|+||++.++-.+.++++.+-+- +-.++
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg---~vd~GI~aaswS~Dee~l~liT~~~tll~mT~-~f~~i 143 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELEIVG---NVDNGISAASWSPDEELLALITGRQTLLFMTK-DFEPI 143 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEcccccceeeee---eccCceEEEeecCCCcEEEEEeCCcEEEEEec-cccch
Confidence 4799999999 567999999999999998877543333 34678999999999999888888888776432 11111
Q ss_pred EEEEeccCCCeEEEccCCCeEEEEecCCeEEEEeCC----------Cceee---eecCCCeEEEEEe-CCEEEEE-----
Q 001455 872 LIEVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSS----------RTLKD---IYRSKGIKSMSVV-QGKIYIG----- 932 (1074)
Q Consensus 872 ~~~~~~h~~~V~s~s~dg~~L~sgS~DgtI~VWDl~----------~~l~~---l~~~~~V~sLa~s-dgkLlaG----- 932 (1074)
..... +. ...+ .+..+.++++..=.-+.-. ...+. ..-+.+-.++.|- ||++++.
T Consensus 144 ~E~~L-~~----d~~~-~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~ 217 (1265)
T KOG1920|consen 144 AEKPL-DA----DDER-KSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVES 217 (1265)
T ss_pred hcccc-cc----cccc-ccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEec
Confidence 00000 00 0001 1123333333311111111 00000 0112334568886 8876664
Q ss_pred ECC-CcEEEEEccCCceeeeccccccccCCCCCeEEEEEcCCceEEEEEe--cCCCeEEEEECCCCC---eEEEccCCCC
Q 001455 933 CMD-SSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSS--VEGSNIKEWRRHRKP---QISIAPEKGT 1006 (1074)
Q Consensus 933 s~D-gsI~IwDl~tg~~~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S--~dDgtI~IWDl~t~~---~i~~l~gH~~ 1006 (1074)
..+ ..|++||-. |.....-. .....-.++.|-|.|..+++.. ++|+.|.+|..+.-. ..-.+.....
T Consensus 218 ~~~~RkirV~drE-g~Lns~se------~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~ 290 (1265)
T KOG1920|consen 218 ETGTRKIRVYDRE-GALNSTSE------PVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEK 290 (1265)
T ss_pred cCCceeEEEeccc-chhhcccC------cccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCccccc
Confidence 235 789999987 33322211 1133345788888887776654 355689999866432 2222222333
Q ss_pred CeEEEEEecCCCEEEE---EECCCcEEEEECCCCcE
Q 001455 1007 TIQAMAVVEDFIYLNY---NSSASSLQIWLRGTQQK 1039 (1074)
Q Consensus 1007 ~VtsLafSPDG~~LaS---GS~DGtIrIWDl~tg~~ 1039 (1074)
.|..++|+.++..|+. ......|++|-..+...
T Consensus 291 ~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhW 326 (1265)
T KOG1920|consen 291 EVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHW 326 (1265)
T ss_pred chheeeecCCCCceeeeecccccceEEEEEecCeEE
Confidence 5899999999999987 44555699998777544
No 289
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.01 E-value=0.00072 Score=88.83 Aligned_cols=216 Identities=13% Similarity=0.077 Sum_probs=121.0
Q ss_pred cEEEEEEe--CCEEEE-EECCCcEEEEECCCCCeeEEEEeccC-----------------CCCEEEEEEcC-CCCEEEEE
Q 001455 796 AVTALIYY--KGLLCS-GFSDGSIKMWDIKKQSAMLVWDVKEH-----------------RKAVTSFSLFE-PGESLLSG 854 (1074)
Q Consensus 796 ~VtsLafS--~~~LaS-Gs~DGtVrIWDl~t~~~~~i~tl~gH-----------------~~~VtsLafSp-dg~~LaSG 854 (1074)
.-..|++. ++.|+. -...+.|+++|..++. +.++.+- -..-+.++|+| ++..+++.
T Consensus 625 ~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~---V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad 701 (1057)
T PLN02919 625 RPQGLAYNAKKNLLYVADTENHALREIDFVNET---VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAM 701 (1057)
T ss_pred CCcEEEEeCCCCEEEEEeCCCceEEEEecCCCE---EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEE
Confidence 45778887 455444 4456789999987764 2333210 01235799999 45556777
Q ss_pred eCCCeEEEEEccCCceEEEEEeccCCCeEEEccCCCeEEEEecCCeEEEEeCCCceeeeecCCCeEEEEEe-CCE-EE-E
Q 001455 855 SADKTIGVWQMVQRKLELIEVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSSRTLKDIYRSKGIKSMSVV-QGK-IY-I 931 (1074)
Q Consensus 855 S~DGtIrIWDl~tg~~~~~~~~~h~~~V~s~s~dg~~L~sgS~DgtI~VWDl~~~l~~l~~~~~V~sLa~s-dgk-Ll-a 931 (1074)
+.++.|++||..++.... +..+|.... .++. ......-.....++++ ++. ++ +
T Consensus 702 ~~~~~I~v~d~~~g~v~~------------~~G~G~~~~---~~g~---------~~~~~~~~~P~GIavspdG~~LYVA 757 (1057)
T PLN02919 702 AGQHQIWEYNISDGVTRV------------FSGDGYERN---LNGS---------SGTSTSFAQPSGISLSPDLKELYIA 757 (1057)
T ss_pred CCCCeEEEEECCCCeEEE------------EecCCcccc---CCCC---------ccccccccCccEEEEeCCCCEEEEE
Confidence 888999999987765321 111110000 0000 0000001123344553 332 33 3
Q ss_pred EECCCcEEEEEccCCceeeeccc-------cccc--------cCCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCC
Q 001455 932 GCMDSSIQELAVSNNVEREIKAP-------FKSW--------RLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKP 996 (1074)
Q Consensus 932 Gs~DgsI~IwDl~tg~~~~i~~~-------~r~~--------~~h~~~I~sL~~spd~i~las~S~dDgtI~IWDl~t~~ 996 (1074)
.+.++.|++||+.++........ ...+ .........+++.+++...++-. .++.|++||..++.
T Consensus 758 Ds~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs-~N~rIrviD~~tg~ 836 (1057)
T PLN02919 758 DSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADS-YNHKIKKLDPATKR 836 (1057)
T ss_pred ECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEEC-CCCEEEEEECCCCe
Confidence 34445666666554332111000 0000 00112345788888876555443 67899999998876
Q ss_pred eEEEcc-------------CCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCcE
Q 001455 997 QISIAP-------------EKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQK 1039 (1074)
Q Consensus 997 ~i~~l~-------------gH~~~VtsLafSPDG~~LaSGS~DGtIrIWDl~tg~~ 1039 (1074)
...... +.-.....++++++|+.+++-+.++.|++||+.+++.
T Consensus 837 v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 837 VTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred EEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 543221 1112577899999999999988999999999988765
No 290
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.01 E-value=5.7e-05 Score=85.50 Aligned_cols=103 Identities=11% Similarity=0.079 Sum_probs=78.2
Q ss_pred ECCCcEEEEEccCCceeeeccccccccCCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCC-eEEEccCCCCCeEEE
Q 001455 933 CMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKP-QISIAPEKGTTIQAM 1011 (1074)
Q Consensus 933 s~DgsI~IwDl~tg~~~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S~dDgtI~IWDl~t~~-~i~~l~gH~~~VtsL 1011 (1074)
+....+.+|....+.. +...+|-..++.++++||..++++.. .|..|++-....-. .-...-||...|..+
T Consensus 129 gD~~~~di~s~~~~~~-------~~~lGhvSml~dVavS~D~~~IitaD-RDEkIRvs~ypa~f~IesfclGH~eFVS~i 200 (390)
T KOG3914|consen 129 GDVYSFDILSADSGRC-------EPILGHVSMLLDVAVSPDDQFIITAD-RDEKIRVSRYPATFVIESFCLGHKEFVSTI 200 (390)
T ss_pred CCceeeeeecccccCc-------chhhhhhhhhheeeecCCCCEEEEec-CCceEEEEecCcccchhhhccccHhheeee
Confidence 3445566666554332 23367888999999999999999876 66788887754433 334556899999999
Q ss_pred EEecCCCEEEEEECCCcEEEEECCCCcEEEEEe
Q 001455 1012 AVVEDFIYLNYNSSASSLQIWLRGTQQKVGRIS 1044 (1074)
Q Consensus 1012 afSPDG~~LaSGS~DGtIrIWDl~tg~~l~tL~ 1044 (1074)
+.-++. .|+|||.|+++++||+.+|+.+.++.
T Consensus 201 sl~~~~-~LlS~sGD~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 201 SLTDNY-LLLSGSGDKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred eeccCc-eeeecCCCCcEEEEecccCCcccccc
Confidence 998654 48999999999999999999987775
No 291
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.00 E-value=9e-05 Score=82.29 Aligned_cols=231 Identities=12% Similarity=0.122 Sum_probs=123.9
Q ss_pred CCcEEEEEEe--CC--EEEEEECCCcEEEEECCCCCeeE---EEEeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcc
Q 001455 794 SGAVTALIYY--KG--LLCSGFSDGSIKMWDIKKQSAML---VWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMV 866 (1074)
Q Consensus 794 ~~~VtsLafS--~~--~LaSGs~DGtVrIWDl~t~~~~~---i~tl~gH~~~VtsLafSpdg~~LaSGS~DGtIrIWDl~ 866 (1074)
...|..+.|. ++ .+...+.|.+|++|.+.....+. ....++..+.|+++.. .+.+..|-.+..
T Consensus 84 eEKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~------p~~~~~~~~vea---- 153 (433)
T KOG1354|consen 84 EEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRL------PVEGRHDLEVEA---- 153 (433)
T ss_pred hhhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeec------eeeccccceeee----
Confidence 4678899998 22 68888999999999986543211 0000111222222222 111111111110
Q ss_pred CCceEEEEEeccCCCeEEEccCCC-eEEEEecCCeEEEEeCCC---ceee--eec------CCCeEEEEEe---CCEEEE
Q 001455 867 QRKLELIEVIATKEPIRKLDTYGK-TIFASTQGHRMKVIDSSR---TLKD--IYR------SKGIKSMSVV---QGKIYI 931 (1074)
Q Consensus 867 tg~~~~~~~~~h~~~V~s~s~dg~-~L~sgS~DgtI~VWDl~~---~l~~--l~~------~~~V~sLa~s---dgkLla 931 (1074)
.+.......|.-.|.+++.+++ ..+....|=.|.+|++.- .... +.+ ..-|++..|. .+.++-
T Consensus 154 --~prRv~aNaHtyhiNSIS~NsD~Et~lSADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~Y 231 (433)
T KOG1354|consen 154 --SPRRVYANAHTYHINSISVNSDKETFLSADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVY 231 (433)
T ss_pred --eeeeeccccceeEeeeeeecCccceEeeccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEE
Confidence 0112223344445555543332 122223344566666541 1111 111 1124555553 233444
Q ss_pred EECCCcEEEEEccCCcee-----eecccc----c-cccCCCCCeEEEEEcCCceEEEEEecCCCeEEEEEC-CCCCeEEE
Q 001455 932 GCMDSSIQELAVSNNVER-----EIKAPF----K-SWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRR-HRKPQISI 1000 (1074)
Q Consensus 932 Gs~DgsI~IwDl~tg~~~-----~i~~~~----r-~~~~h~~~I~sL~~spd~i~las~S~dDgtI~IWDl-~t~~~i~~ 1000 (1074)
.+..|+|++.|++..... ....|. + .+..--..|..+.|+++|.|+++-. --+|++||+ ...+.+.+
T Consensus 232 SSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRD--yltvk~wD~nme~~pv~t 309 (433)
T KOG1354|consen 232 SSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRD--YLTVKLWDLNMEAKPVET 309 (433)
T ss_pred ecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEec--cceeEEEeccccCCcceE
Confidence 677788888888742211 110000 0 0111135678899999999999863 468999997 34455555
Q ss_pred ccCCCC------------C---eEEEEEecCCCEEEEEECCCcEEEEECCCCc
Q 001455 1001 APEKGT------------T---IQAMAVVEDFIYLNYNSSASSLQIWLRGTQQ 1038 (1074)
Q Consensus 1001 l~gH~~------------~---VtsLafSPDG~~LaSGS~DGtIrIWDl~tg~ 1038 (1074)
+.-|.. . -..++|+.++.+++|||..+.+++++...|.
T Consensus 310 ~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 310 YPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred EeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCCc
Confidence 555542 2 2357899999999999999999999955443
No 292
>PRK01029 tolB translocation protein TolB; Provisional
Probab=97.98 E-value=0.00075 Score=80.50 Aligned_cols=211 Identities=8% Similarity=-0.083 Sum_probs=114.2
Q ss_pred CeEEEEEccCCceEEEEEeccCCCe--EEEccCCCe--EE-EEecC--CeEEEEeCCC-ceeeee-cCCCeEEEEEe-CC
Q 001455 858 KTIGVWQMVQRKLELIEVIATKEPI--RKLDTYGKT--IF-ASTQG--HRMKVIDSSR-TLKDIY-RSKGIKSMSVV-QG 927 (1074)
Q Consensus 858 GtIrIWDl~tg~~~~~~~~~h~~~V--~s~s~dg~~--L~-sgS~D--gtI~VWDl~~-~l~~l~-~~~~V~sLa~s-dg 927 (1074)
+.|.+.|...++..... ...... -.|+|+|+. ++ +...+ ..|.+.++.+ ....+. .........|+ ||
T Consensus 165 ~~l~~~d~dG~~~~~lt--~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG 242 (428)
T PRK01029 165 GELWSVDYDGQNLRPLT--QEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPRK 242 (428)
T ss_pred ceEEEEcCCCCCceEcc--cCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECCCC
Confidence 35667777655433221 122222 258999875 32 33333 3677778763 222222 23334456776 77
Q ss_pred E-EEEEE-C----CCcEEEEEccCCceeeeccccccccCCCCCeEEEEEcCCceEEEEEecCCCeEEEE--ECCC-CCeE
Q 001455 928 K-IYIGC-M----DSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEW--RRHR-KPQI 998 (1074)
Q Consensus 928 k-LlaGs-~----DgsI~IwDl~tg~~~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S~dDgtI~IW--Dl~t-~~~i 998 (1074)
+ ++..+ . +..+..|++..+..... .+.............++|||..++..+..+|...+| +... +...
T Consensus 243 ~~Laf~s~~~g~~di~~~~~~~~~g~~g~~---~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~ 319 (428)
T PRK01029 243 KLLAFISDRYGNPDLFIQSFSLETGAIGKP---RRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSP 319 (428)
T ss_pred CEEEEEECCCCCcceeEEEeecccCCCCcc---eEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccce
Confidence 5 44332 2 22344467665311100 011111122345678999998777555445555555 4432 2233
Q ss_pred EEccCCCCCeEEEEEecCCCEEEEEECC---CcEEEEECCCCcEEEEEeCCCCeEEEEE--cCCEEEE-EECC--CcEEE
Q 001455 999 SIAPEKGTTIQAMAVVEDFIYLNYNSSA---SSLQIWLRGTQQKVGRISAGSKITSLLT--ANDIVLC-GTET--GLIKG 1070 (1074)
Q Consensus 999 ~~l~gH~~~VtsLafSPDG~~LaSGS~D---GtIrIWDl~tg~~l~tL~~hs~VtsLa~--dg~~LaS-Gs~D--G~IrI 1070 (1074)
..+..+...+....|||||++|+..+.+ ..|.+||..+++...-......+....| +|+.|+. +..+ +.|++
T Consensus 320 ~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~ 399 (428)
T PRK01029 320 RLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYL 399 (428)
T ss_pred EEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEECCCCCceEEE
Confidence 4444455567789999999999876643 4699999988876433333233455555 5776664 3333 45666
Q ss_pred Eec
Q 001455 1071 WIP 1073 (1074)
Q Consensus 1071 Wdi 1073 (1074)
|++
T Consensus 400 vdl 402 (428)
T PRK01029 400 ISL 402 (428)
T ss_pred EEC
Confidence 663
No 293
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=97.97 E-value=1.6e-05 Score=61.33 Aligned_cols=38 Identities=18% Similarity=0.295 Sum_probs=35.9
Q ss_pred CeEEEccCCCCCeEEEEEecCCCEEEEEECCCcEEEEE
Q 001455 996 PQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWL 1033 (1074)
Q Consensus 996 ~~i~~l~gH~~~VtsLafSPDG~~LaSGS~DGtIrIWD 1033 (1074)
+++..+.+|...|++++|+|++.+|++|+.|++|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 46788999999999999999999999999999999997
No 294
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=97.96 E-value=0.00033 Score=76.69 Aligned_cols=161 Identities=9% Similarity=0.113 Sum_probs=106.2
Q ss_pred eEEEEecCCeEEEEeCCCce--eeeecC--C--C---eEEEEEe--CCEEEEEECCCcEEEEEccCCceeeecccccccc
Q 001455 891 TIFASTQGHRMKVIDSSRTL--KDIYRS--K--G---IKSMSVV--QGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWR 959 (1074)
Q Consensus 891 ~L~sgS~DgtI~VWDl~~~l--~~l~~~--~--~---V~sLa~s--dgkLlaGs~DgsI~IwDl~tg~~~~i~~~~r~~~ 959 (1074)
.++-+...|.|.+|...... ..+.+- . . .-++.|+ ..+++++-.+|.+.+.+........ ++.|+
T Consensus 87 ~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~----vq~wk 162 (339)
T KOG0280|consen 87 NLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEK----VQTWK 162 (339)
T ss_pred eeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeee----ccccc
Confidence 34555567778888765222 222221 1 1 2244454 3458888889998866555433322 35788
Q ss_pred CCCCCeEEEEEcCCceEEEEEecCCCeEEEEECC-CCCeE-EEccCCCCCeEEEEEec-CCCEEEEEECCCcEEEEECC-
Q 001455 960 LQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRH-RKPQI-SIAPEKGTTIQAMAVVE-DFIYLNYNSSASSLQIWLRG- 1035 (1074)
Q Consensus 960 ~h~~~I~sL~~spd~i~las~S~dDgtI~IWDl~-t~~~i-~~l~gH~~~VtsLafSP-DG~~LaSGS~DGtIrIWDl~- 1035 (1074)
.|........|+.....++-.+.+|+.+..||++ .+..+ +....|...|.+|.-+| .+.+|+||+.|..|++||.+
T Consensus 163 ~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRn 242 (339)
T KOG0280|consen 163 VHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRN 242 (339)
T ss_pred ccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhc
Confidence 8988888888875444333334499999999987 33333 33556888899998885 78899999999999999977
Q ss_pred CCcEEEEEeCCCCeEEEEEc
Q 001455 1036 TQQKVGRISAGSKITSLLTA 1055 (1074)
Q Consensus 1036 tg~~l~tL~~hs~VtsLa~d 1055 (1074)
-++++..-...+.|+.+.+.
T Consensus 243 m~kPl~~~~v~GGVWRi~~~ 262 (339)
T KOG0280|consen 243 MGKPLFKAKVGGGVWRIKHH 262 (339)
T ss_pred ccCccccCccccceEEEEec
Confidence 56777655555666665544
No 295
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.93 E-value=0.0064 Score=66.61 Aligned_cols=202 Identities=11% Similarity=0.029 Sum_probs=127.7
Q ss_pred EEEEcC-CCCEEEEEeCCCeEEEEEccCCceEEEEEeccCCCeE-EEccCCCeEEEEecCCeEEEEeCCC-ceeeeec--
Q 001455 841 SFSLFE-PGESLLSGSADKTIGVWQMVQRKLELIEVIATKEPIR-KLDTYGKTIFASTQGHRMKVIDSSR-TLKDIYR-- 915 (1074)
Q Consensus 841 sLafSp-dg~~LaSGS~DGtIrIWDl~tg~~~~~~~~~h~~~V~-s~s~dg~~L~sgS~DgtI~VWDl~~-~l~~l~~-- 915 (1074)
+..|.+ ++..+++--..+.|..|+..++...... ...+.- .+...+..++.+..++ +.++|... ....+..
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~---~~~~~G~~~~~~~g~l~v~~~~~-~~~~d~~~g~~~~~~~~~ 79 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVID---LPGPNGMAFDRPDGRLYVADSGG-IAVVDPDTGKVTVLADLP 79 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEE---SSSEEEEEEECTTSEEEEEETTC-EEEEETTTTEEEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEe---cCCCceEEEEccCCEEEEEEcCc-eEEEecCCCcEEEEeecc
Confidence 567888 5666667667899999999887643322 222333 2342345555555544 45558763 3322221
Q ss_pred -----CCCeEEEEEe-CCEEEEEECC---------CcEEEEEccCCceeeeccccccccCCCCCeEEEEEcCCceEEEEE
Q 001455 916 -----SKGIKSMSVV-QGKIYIGCMD---------SSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASS 980 (1074)
Q Consensus 916 -----~~~V~sLa~s-dgkLlaGs~D---------gsI~IwDl~tg~~~~i~~~~r~~~~h~~~I~sL~~spd~i~las~ 980 (1074)
......+++. +|.++.+... |.|..++.. ++..... ..-...+.++++|++..+...
T Consensus 80 ~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~-------~~~~~pNGi~~s~dg~~lyv~ 151 (246)
T PF08450_consen 80 DGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVA-------DGLGFPNGIAFSPDGKTLYVA 151 (246)
T ss_dssp TTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEE-------EEESSEEEEEEETTSSEEEEE
T ss_pred CCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEe-------cCcccccceEECCcchheeec
Confidence 2236788886 8887775432 457777776 3432221 123456899999999877655
Q ss_pred ecCCCeEEEEECCC--CCe-----EEEccCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCcEEEEEeCC-CCeEEE
Q 001455 981 SVEGSNIKEWRRHR--KPQ-----ISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAG-SKITSL 1052 (1074)
Q Consensus 981 S~dDgtI~IWDl~t--~~~-----i~~l~gH~~~VtsLafSPDG~~LaSGS~DGtIrIWDl~tg~~l~tL~~h-s~VtsL 1052 (1074)
....+.|..++... +.. ...+....+..-.++++++|++.++....+.|.+++.+ |+.+..+... ..++++
T Consensus 152 ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~ 230 (246)
T PF08450_consen 152 DSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNC 230 (246)
T ss_dssp ETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEE
T ss_pred ccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEE
Confidence 55677888888753 211 11222222347889999999998888889999999987 9999888877 569999
Q ss_pred EEc
Q 001455 1053 LTA 1055 (1074)
Q Consensus 1053 a~d 1055 (1074)
+|.
T Consensus 231 ~fg 233 (246)
T PF08450_consen 231 AFG 233 (246)
T ss_dssp EEE
T ss_pred EEE
Confidence 994
No 296
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=97.92 E-value=0.0025 Score=70.08 Aligned_cols=222 Identities=14% Similarity=0.125 Sum_probs=124.4
Q ss_pred CCEEEEEECCCcEEEEECCCCCeeEEEEeccCC---CCEEEEEEcCCCCEEEEEeCCCeEEEEEccCCceEEEEEecc--
Q 001455 804 KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHR---KAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIAT-- 878 (1074)
Q Consensus 804 ~~~LaSGs~DGtVrIWDl~t~~~~~i~tl~gH~---~~VtsLafSpdg~~LaSGS~DGtIrIWDl~tg~~~~~~~~~h-- 878 (1074)
+|.+++.-.|..|.|=..++.-...+.+.+-++ -.=.-++||||+..||.+...|+|+++|+....+ ......+
T Consensus 8 ~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~l-f~I~p~~~~ 86 (282)
T PF15492_consen 8 DGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSEL-FVIPPAMSF 86 (282)
T ss_pred CCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccccee-EEcCccccc
Confidence 667777777888887776654222223332222 2345799999999999999999999999975432 2111111
Q ss_pred ----CCCeEEE---ccC-----CCeEEEEecCCeEEEEeCC-------Cceeeeec----CCCeEEEEEeCC-E-EEE-E
Q 001455 879 ----KEPIRKL---DTY-----GKTIFASTQGHRMKVIDSS-------RTLKDIYR----SKGIKSMSVVQG-K-IYI-G 932 (1074)
Q Consensus 879 ----~~~V~s~---s~d-----g~~L~sgS~DgtI~VWDl~-------~~l~~l~~----~~~V~sLa~sdg-k-Lla-G 932 (1074)
...|..+ ..+ ...+++....|.++-|-+. .....+.. ..+|.++.+..+ + ++. |
T Consensus 87 ~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG 166 (282)
T PF15492_consen 87 PGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGG 166 (282)
T ss_pred CCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEec
Confidence 1223221 122 2357777777777666542 11122221 457888888633 3 444 4
Q ss_pred ECCCcEEEEEccCCceeeeccccccccCCCCCeEEEEEcCC---ceEEEEEecCCC------eEEEEECCCCCeEEEccC
Q 001455 933 CMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKD---WLYSASSSVEGS------NIKEWRRHRKPQISIAPE 1003 (1074)
Q Consensus 933 s~DgsI~IwDl~tg~~~~i~~~~r~~~~h~~~I~sL~~spd---~i~las~S~dDg------tI~IWDl~t~~~i~~l~g 1003 (1074)
+....-..+ ......+++...-.+ ...+. +.+++ +-.+|.+-+.........
T Consensus 167 ~~~~~~~~s-----------------~a~~~GLtaWRiL~~~Pyyk~v~--~~~~~~~~~~~~~~~~~~~~~~~fs~~~~ 227 (282)
T PF15492_consen 167 CEQNQDGMS-----------------KASSCGLTAWRILSDSPYYKQVT--SSEDDITASSKRRGLLRIPSFKFFSRQGQ 227 (282)
T ss_pred cCCCCCccc-----------------cccccCceEEEEcCCCCcEEEcc--ccCccccccccccceeeccceeeeecccc
Confidence 433310000 011222333222222 11111 11121 223444333322222233
Q ss_pred CCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCcEEEEEeC
Q 001455 1004 KGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISA 1045 (1074)
Q Consensus 1004 H~~~VtsLafSPDG~~LaSGS~DGtIrIWDl~tg~~l~tL~~ 1045 (1074)
....|..|..||||..||+...+|.|.+|++.+....+.+.-
T Consensus 228 ~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~ 269 (282)
T PF15492_consen 228 EQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQ 269 (282)
T ss_pred CCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccch
Confidence 566899999999999999999999999999988877766653
No 297
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=97.89 E-value=0.0041 Score=71.84 Aligned_cols=113 Identities=12% Similarity=0.073 Sum_probs=89.7
Q ss_pred CCCCcEEEEEEe--CCEEEEEECCC-cEEEEECCCCCeeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEccCC
Q 001455 792 KCSGAVTALIYY--KGLLCSGFSDG-SIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQR 868 (1074)
Q Consensus 792 gH~~~VtsLafS--~~~LaSGs~DG-tVrIWDl~t~~~~~i~tl~gH~~~VtsLafSpdg~~LaSGS~DGtIrIWDl~tg 868 (1074)
+|.+.|.-..+. ++-++.|..|| .+-|+|..+++. ..+.+.-+.|.++..+++|++++.+.....+.+.|+.+|
T Consensus 357 ~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~---kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididng 433 (668)
T COG4946 357 GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEV---KRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNG 433 (668)
T ss_pred CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceE---EEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCC
Confidence 678889988888 55799999999 999999998863 455667789999999999999999988889999999999
Q ss_pred ceEEEEEeccCCCeEE--EccCCCeEEEEecCC----eEEEEeCCC
Q 001455 869 KLELIEVIATKEPIRK--LDTYGKTIFASTQGH----RMKVIDSSR 908 (1074)
Q Consensus 869 ~~~~~~~~~h~~~V~s--~s~dg~~L~sgS~Dg----tI~VWDl~~ 908 (1074)
+... .-.....-|+. +++++++++-+-.+| .|++||+.+
T Consensus 434 nv~~-idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~ 478 (668)
T COG4946 434 NVRL-IDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDG 478 (668)
T ss_pred CeeE-ecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCC
Confidence 8543 22233445655 567788888876555 789999874
No 298
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.86 E-value=0.0029 Score=77.66 Aligned_cols=218 Identities=11% Similarity=0.145 Sum_probs=132.2
Q ss_pred cEEEEEEeCCEEEEEECCCcEEEEECCCCCeeEEEEeccCCCC-EEEEEEcCCCCEEEEEeCCCe-----EEEEEccCCc
Q 001455 796 AVTALIYYKGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKA-VTSFSLFEPGESLLSGSADKT-----IGVWQMVQRK 869 (1074)
Q Consensus 796 ~VtsLafS~~~LaSGs~DGtVrIWDl~t~~~~~i~tl~gH~~~-VtsLafSpdg~~LaSGS~DGt-----IrIWDl~tg~ 869 (1074)
.|+|+.-+++.++.|+.||.|.+.+-.- ..++.++.+... |+.+....+..+|++.+.|+. ++|||++.-+
T Consensus 27 ~isc~~s~~~~vvigt~~G~V~~Ln~s~---~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~ 103 (933)
T KOG2114|consen 27 AISCCSSSTGSVVIGTADGRVVILNSSF---QLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVD 103 (933)
T ss_pred ceeEEcCCCceEEEeeccccEEEecccc---eeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccC
Confidence 6777776688999999999998887543 235778888777 554444344467888877764 8999986431
Q ss_pred eEEEEEeccCCCeEEEccCCCeEEEEecCCeEEEEeCCCceeeeecCCCeEEEEEe-C-CEEEEEECCCcEEEEEccCCc
Q 001455 870 LELIEVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSSRTLKDIYRSKGIKSMSVV-Q-GKIYIGCMDSSIQELAVSNNV 947 (1074)
Q Consensus 870 ~~~~~~~~h~~~V~s~s~dg~~L~sgS~DgtI~VWDl~~~l~~l~~~~~V~sLa~s-d-gkLlaGs~DgsI~IwDl~tg~ 947 (1074)
. ...| .++ +..+++-... -....++.+++++ + ..+++|-.+|.|..+.-.--+
T Consensus 104 ~-------n~sP-~c~-------------~~~ri~~~~n----p~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~R 158 (933)
T KOG2114|consen 104 K-------NNSP-QCL-------------YEHRIFTIKN----PTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILR 158 (933)
T ss_pred C-------CCCc-cee-------------eeeeeeccCC----CCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchh
Confidence 0 0000 000 0011111000 0113345566665 2 336667788888777432211
Q ss_pred eeeeccccccccCCCCCeEEEEEcCCceE-EEEEecCCCeEEEEECCCCC-eEEEccCCCCCeEEEEEecCCCEEEEEEC
Q 001455 948 EREIKAPFKSWRLQSKPINSLVVYKDWLY-SASSSVEGSNIKEWRRHRKP-QISIAPEKGTTIQAMAVVEDFIYLNYNSS 1025 (1074)
Q Consensus 948 ~~~i~~~~r~~~~h~~~I~sL~~spd~i~-las~S~dDgtI~IWDl~t~~-~i~~l~gH~~~VtsLafSPDG~~LaSGS~ 1025 (1074)
....+ .......+.+|+.+.+..++.. ++... -..|.+|.+.... ....+..|+..+.|..+++....+++++
T Consensus 159 Drgsr--~~~~~~~~~pITgL~~~~d~~s~lFv~T--t~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~- 233 (933)
T KOG2114|consen 159 DRGSR--QDYSHRGKEPITGLALRSDGKSVLFVAT--TEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG- 233 (933)
T ss_pred ccccc--eeeeccCCCCceeeEEecCCceeEEEEe--cceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec-
Confidence 11110 0111234789999999887765 22222 2479999987544 3555778888999999987655344444
Q ss_pred CCcEEEEECCCCcEEEEEe-CC
Q 001455 1026 ASSLQIWLRGTQQKVGRIS-AG 1046 (1074)
Q Consensus 1026 DGtIrIWDl~tg~~l~tL~-~h 1046 (1074)
+..+.+|+.....+-.++. +|
T Consensus 234 ~e~l~fY~sd~~~~cfaf~~g~ 255 (933)
T KOG2114|consen 234 SEFLYFYDSDGRGPCFAFEVGE 255 (933)
T ss_pred CceEEEEcCCCcceeeeecCCC
Confidence 4679999988888888888 44
No 299
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=97.84 E-value=0.0058 Score=79.27 Aligned_cols=269 Identities=14% Similarity=0.095 Sum_probs=155.7
Q ss_pred CcEEEEEEe---CCE-EEEEECCC--cEEEEECCCCC-eeEEEEec-----cCCCCEEEEEEcCCCCEEEEEeCCCeEEE
Q 001455 795 GAVTALIYY---KGL-LCSGFSDG--SIKMWDIKKQS-AMLVWDVK-----EHRKAVTSFSLFEPGESLLSGSADKTIGV 862 (1074)
Q Consensus 795 ~~VtsLafS---~~~-LaSGs~DG--tVrIWDl~t~~-~~~i~tl~-----gH~~~VtsLafSpdg~~LaSGS~DGtIrI 862 (1074)
..+...+|. +.. ++++.... .|.+....... ...+..+. ...+.|.++.|.++...++.+..+|.|.+
T Consensus 22 ~~~~~~~~d~~sd~i~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~ 101 (928)
T PF04762_consen 22 LPITATAFDSDSDSIYFVLGPNEIDYVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVSFQYLADSESLCIALASGDIIL 101 (928)
T ss_pred cccceEEEecCCCeEEEEECCCCcceEEEEEeeccCCceeEEEeccccCCcCCCCcEEEEEeccCCCcEEEEECCceEEE
Confidence 356666666 233 44443433 34444333221 12333432 33578999999999999999999999999
Q ss_pred E----EccCCceEEEEEeccCCCeE--EEccCCCeEEEEecCCeEEEEeCCC-ceeeeecCCCeEEEEEeCCEEEEEECC
Q 001455 863 W----QMVQRKLELIEVIATKEPIR--KLDTYGKTIFASTQGHRMKVIDSSR-TLKDIYRSKGIKSMSVVQGKIYIGCMD 935 (1074)
Q Consensus 863 W----Dl~tg~~~~~~~~~h~~~V~--s~s~dg~~L~sgS~DgtI~VWDl~~-~l~~l~~~~~V~sLa~sdgkLlaGs~D 935 (1074)
. |..+..... +......|. +|+|++..++.++.++++.+.+-.- .+....- ..-.+..++.++.|+.
T Consensus 102 ~~~~~~~~~~~~E~--VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l----~~~~~~~~~~VsVGWG 175 (928)
T PF04762_consen 102 VREDPDPDEDEIEI--VGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPL----DSDDFGESKHVSVGWG 175 (928)
T ss_pred EEccCCCCCceeEE--EEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeec----CccccCCCceeeeccC
Confidence 9 666554443 334455565 4899999999999999888876441 1111000 0000112233443333
Q ss_pred CcEEEEEccCCceee--eccc------cccccCCCCCeEEEEEcCCceEEEEEec---CC--CeEEEEECCCCCeEEEcc
Q 001455 936 SSIQELAVSNNVERE--IKAP------FKSWRLQSKPINSLVVYKDWLYSASSSV---EG--SNIKEWRRHRKPQISIAP 1002 (1074)
Q Consensus 936 gsI~IwDl~tg~~~~--i~~~------~r~~~~h~~~I~sL~~spd~i~las~S~---dD--gtI~IWDl~t~~~i~~l~ 1002 (1074)
..=.-|.-..|+... ...| ..... ....-..+.|-.||.|++..+. .+ ..+++|+.+ |.+..+..
T Consensus 176 kKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE 253 (928)
T PF04762_consen 176 KKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSE 253 (928)
T ss_pred cccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccc
Confidence 222222222222100 0000 01112 3445678899999999887764 23 589999987 55544444
Q ss_pred CCCCCeEEEEEecCCCEEEEEEC---CCcEEEEECCCCcEEEEEeC-----CCCeEEEEEc--CCEEEEEECCCcEEEEe
Q 001455 1003 EKGTTIQAMAVVEDFIYLNYNSS---ASSLQIWLRGTQQKVGRISA-----GSKITSLLTA--NDIVLCGTETGLIKGWI 1072 (1074)
Q Consensus 1003 gH~~~VtsLafSPDG~~LaSGS~---DGtIrIWDl~tg~~l~tL~~-----hs~VtsLa~d--g~~LaSGs~DG~IrIWd 1072 (1074)
.-.+--.+++|.|.|.+||+... ...|.+|..+. -.-..|.. ...|..+.|+ +..|+....|. |++|-
T Consensus 254 ~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNG-LrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt 331 (928)
T PF04762_consen 254 PVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNG-LRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWT 331 (928)
T ss_pred cCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCC-cEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEE
Confidence 33344457899999999999764 35567776433 33222322 2348899997 56888877665 99995
Q ss_pred c
Q 001455 1073 P 1073 (1074)
Q Consensus 1073 i 1073 (1074)
.
T Consensus 332 ~ 332 (928)
T PF04762_consen 332 R 332 (928)
T ss_pred e
Confidence 3
No 300
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.78 E-value=1.7e-05 Score=95.90 Aligned_cols=201 Identities=12% Similarity=0.011 Sum_probs=134.7
Q ss_pred EEEEeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEccCCceEEEEEeccCCCeEEEcc--CCCeEEEEe-cCC-eEEE
Q 001455 828 LVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATKEPIRKLDT--YGKTIFAST-QGH-RMKV 903 (1074)
Q Consensus 828 ~i~tl~gH~~~VtsLafSpdg~~LaSGS~DGtIrIWDl~tg~~~~~~~~~h~~~V~s~s~--dg~~L~sgS-~Dg-tI~V 903 (1074)
...+|..|+...+|++|+.+.++|+.|+..|.|+++++.+|... ..+.+|..+|+.+.| +|...++.+ +.. -..+
T Consensus 1093 ~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e-~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaL 1171 (1516)
T KOG1832|consen 1093 SWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSME-ESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSAL 1171 (1516)
T ss_pred cchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCcccc-ccccccccccccccccCCcceeeeeccccCchHHH
Confidence 35677889999999999999999999999999999999999743 466789999998754 566655554 333 5778
Q ss_pred EeCCCceeeeecCCCeEEEEEeCCE--EEEEECCCcEEEEEccCCceeee-ccccccccCCCCCeEEEEEcCCceEEEEE
Q 001455 904 IDSSRTLKDIYRSKGIKSMSVVQGK--IYIGCMDSSIQELAVSNNVEREI-KAPFKSWRLQSKPINSLVVYKDWLYSASS 980 (1074)
Q Consensus 904 WDl~~~l~~l~~~~~V~sLa~sdgk--LlaGs~DgsI~IwDl~tg~~~~i-~~~~r~~~~h~~~I~sL~~spd~i~las~ 980 (1074)
|++.........-..-.++.|++.. -+.|+......+||+.++..... ..+. .+....-+...|+|....++-
T Consensus 1172 W~~~s~~~~~Hsf~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~---~~~~y~~n~a~FsP~D~LIln- 1247 (1516)
T KOG1832|consen 1172 WDASSTGGPRHSFDEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDT---VTSSYSNNLAHFSPCDTLILN- 1247 (1516)
T ss_pred hccccccCccccccccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcc---hhhhhhccccccCCCcceEee-
Confidence 9987422221112234566776332 23355557789999999765322 1111 111222255667777666552
Q ss_pred ecCCCeEEEEECCCCCeEEEccCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCcEEEEEe
Q 001455 981 SVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRIS 1044 (1074)
Q Consensus 981 S~dDgtI~IWDl~t~~~i~~l~gH~~~VtsLafSPDG~~LaSGS~DGtIrIWDl~tg~~l~tL~ 1044 (1074)
|| .+||.+....++.|......+ .=.|+|+|.-++..+ .|||+++.+.+++..
T Consensus 1248 ---dG--vLWDvR~~~aIh~FD~ft~~~-~G~FHP~g~eVIINS-----EIwD~RTF~lLh~VP 1300 (1516)
T KOG1832|consen 1248 ---DG--VLWDVRIPEAIHRFDQFTDYG-GGGFHPSGNEVIINS-----EIWDMRTFKLLHSVP 1300 (1516)
T ss_pred ---Cc--eeeeeccHHHHhhhhhheecc-cccccCCCceEEeec-----hhhhhHHHHHHhcCc
Confidence 44 689988877666664443222 235899999988865 489999988776554
No 301
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=97.75 E-value=0.0028 Score=68.84 Aligned_cols=220 Identities=10% Similarity=-0.047 Sum_probs=136.1
Q ss_pred CcEEEEECCCCCeeEEEEeccCCCCEEEEEEcC-----CCCEEEEEeCCCeEEEEEccCCceEEEEEeccCCCeE---EE
Q 001455 814 GSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFE-----PGESLLSGSADKTIGVWQMVQRKLELIEVIATKEPIR---KL 885 (1074)
Q Consensus 814 GtVrIWDl~t~~~~~i~tl~gH~~~VtsLafSp-----dg~~LaSGS~DGtIrIWDl~tg~~~~~~~~~h~~~V~---s~ 885 (1074)
..|-+|+.-+.....+... +.+.|.| ...+|+.||.-|...+|...+.+........+...|. ..
T Consensus 52 ~sv~i~~~y~N~~~iv~~y-------~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~ 124 (344)
T KOG4532|consen 52 ISVPINSHYSNPKGIVEFY-------TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRY 124 (344)
T ss_pred eeeEeccccCCchhhEEee-------ecccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhhh
Confidence 4577888766532112222 3344544 3446999999999999999877654444344444333 23
Q ss_pred ccCCCeEEEEecCCeEEEEeCCCceeeee-cC--CCeEEEEEe-CCEEE-EEECCCcEEEEEccCCceeeeccccccccC
Q 001455 886 DTYGKTIFASTQGHRMKVIDSSRTLKDIY-RS--KGIKSMSVV-QGKIY-IGCMDSSIQELAVSNNVEREIKAPFKSWRL 960 (1074)
Q Consensus 886 s~dg~~L~sgS~DgtI~VWDl~~~l~~l~-~~--~~V~sLa~s-dgkLl-aGs~DgsI~IwDl~tg~~~~i~~~~r~~~~ 960 (1074)
......+..++.|.++++.+++....... +. -.+.+++++ ++++. +.+....|..|.+.......... ....
T Consensus 125 cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~---~~a~ 201 (344)
T KOG4532|consen 125 CDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENI---YEAP 201 (344)
T ss_pred cccccceeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeee---Eecc
Confidence 33444677888999999999884333222 22 237788887 77755 46777888888887644322210 0011
Q ss_pred CCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCC-e----EEEccCCCCCeEEEEEecCCC--EEEEEECCCcEEEEE
Q 001455 961 QSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKP-Q----ISIAPEKGTTIQAMAVVEDFI--YLNYNSSASSLQIWL 1033 (1074)
Q Consensus 961 h~~~I~sL~~spd~i~las~S~dDgtI~IWDl~t~~-~----i~~l~gH~~~VtsLafSPDG~--~LaSGS~DGtIrIWD 1033 (1074)
....-.+..|+......+.+. .||++.|||++... + ..+-..|.+.++.+.|++.|. +|...-.-+.+.+-|
T Consensus 202 t~D~gF~~S~s~~~~~FAv~~-Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D 280 (344)
T KOG4532|consen 202 TSDHGFYNSFSENDLQFAVVF-QDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVD 280 (344)
T ss_pred cCCCceeeeeccCcceEEEEe-cCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEE
Confidence 122334556666655555554 79999999986533 2 223446889999999998654 333333457899999
Q ss_pred CCCCcEEEEEe
Q 001455 1034 RGTQQKVGRIS 1044 (1074)
Q Consensus 1034 l~tg~~l~tL~ 1044 (1074)
++++.....+.
T Consensus 281 ~R~~~~~q~I~ 291 (344)
T KOG4532|consen 281 TRNYVNHQVIV 291 (344)
T ss_pred cccCceeeEEe
Confidence 99987765554
No 302
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.73 E-value=0.024 Score=62.96 Aligned_cols=228 Identities=16% Similarity=0.128 Sum_probs=135.1
Q ss_pred CCEEEEEECCCcEEEEECCCCCeeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEccCCceEEEE---------
Q 001455 804 KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIE--------- 874 (1074)
Q Consensus 804 ~~~LaSGs~DGtVrIWDl~t~~~~~i~tl~gH~~~VtsLafSpdg~~LaSGS~DGtIrIWDl~tg~~~~~~--------- 874 (1074)
++.|+.|..+| +.+++..... ..... .+...|..+...|+-+.|+.-+ ||.+.++++..-......
T Consensus 7 ~~~L~vGt~~G-l~~~~~~~~~-~~~~i--~~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~ 81 (275)
T PF00780_consen 7 GDRLLVGTEDG-LYVYDLSDPS-KPTRI--LKLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSR 81 (275)
T ss_pred CCEEEEEECCC-EEEEEecCCc-cceeE--eecceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccc
Confidence 67899999999 8999983222 11122 2334499999999888877665 599999998764322210
Q ss_pred ----EeccCCCeEEEc----cCCCeEEEEecCCeEEEEeCCC-------ceeeeecCCCeEEEEEeCCEEEEEECCCcEE
Q 001455 875 ----VIATKEPIRKLD----TYGKTIFASTQGHRMKVIDSSR-------TLKDIYRSKGIKSMSVVQGKIYIGCMDSSIQ 939 (1074)
Q Consensus 875 ----~~~h~~~V~s~s----~dg~~L~sgS~DgtI~VWDl~~-------~l~~l~~~~~V~sLa~sdgkLlaGs~DgsI~ 939 (1074)
.......+..|. ..+...+++.....|.+|.+.. ..+.+.-...+.+++|.++.++.|..++ ..
T Consensus 82 ~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~~~~i~v~~~~~-f~ 160 (275)
T PF00780_consen 82 SLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFLGNKICVGTSKG-FY 160 (275)
T ss_pred cccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEeCCEEEEEeCCc-eE
Confidence 112223344454 3344455555556888887653 2233444677899999877777776544 77
Q ss_pred EEEccCCceeeecccccc------ccCCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEE--EccCCCCCeEEE
Q 001455 940 ELAVSNNVEREIKAPFKS------WRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQIS--IAPEKGTTIQAM 1011 (1074)
Q Consensus 940 IwDl~tg~~~~i~~~~r~------~~~h~~~I~sL~~spd~i~las~S~dDgtI~IWDl~t~~~i~--~l~gH~~~VtsL 1011 (1074)
+.|+.++....+..+... ......++..+.... +.++++.. ..-.+.|.. |...+ .+.- ...+.++
T Consensus 161 ~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~e~Ll~~~---~~g~fv~~~-G~~~r~~~i~W-~~~p~~~ 234 (275)
T PF00780_consen 161 LIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLSD-NEFLLCYD---NIGVFVNKN-GEPSRKSTIQW-SSAPQSV 234 (275)
T ss_pred EEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeCC-ceEEEEec---ceEEEEcCC-CCcCcccEEEc-CCchhEE
Confidence 889987666544321110 011123444444443 46666542 233333433 33222 2211 2245566
Q ss_pred EEecCCCEEEEEECCCcEEEEECCCCcEEEEEeCC
Q 001455 1012 AVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAG 1046 (1074)
Q Consensus 1012 afSPDG~~LaSGS~DGtIrIWDl~tg~~l~tL~~h 1046 (1074)
++. ..||+..+. +.|.||++.+++.++++...
T Consensus 235 ~~~--~pyli~~~~-~~iEV~~~~~~~lvQ~i~~~ 266 (275)
T PF00780_consen 235 AYS--SPYLIAFSS-NSIEVRSLETGELVQTIPLP 266 (275)
T ss_pred EEE--CCEEEEECC-CEEEEEECcCCcEEEEEECC
Confidence 663 457777665 55999999999999999865
No 303
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=97.72 E-value=0.0035 Score=75.94 Aligned_cols=82 Identities=17% Similarity=0.164 Sum_probs=64.4
Q ss_pred CCCCCcEEEEEEeC----------C----EEEEEECCCcEEEEECCCCCeeEEEEeccCCCCEEEEEEcCC---C-CEEE
Q 001455 791 HKCSGAVTALIYYK----------G----LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEP---G-ESLL 852 (1074)
Q Consensus 791 ~gH~~~VtsLafS~----------~----~LaSGs~DGtVrIWDl~t~~~~~i~tl~gH~~~VtsLafSpd---g-~~La 852 (1074)
.-|...|+.|.|.+ . .+|++.-.|.|.+||...+.. +..+..|.++|..++|-+. . ..|+
T Consensus 52 e~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~--~~~l~~~~~~~qdl~W~~~rd~Srd~Ll 129 (1062)
T KOG1912|consen 52 ELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASV--INWLSHSNDSVQDLCWVPARDDSRDVLL 129 (1062)
T ss_pred ccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhh--hhhhcCCCcchhheeeeeccCcchheeE
Confidence 36789999999961 1 478888899999999988754 6778889999999999753 3 3466
Q ss_pred EEeCCCeEEEEEccCCceEEEE
Q 001455 853 SGSADKTIGVWQMVQRKLELIE 874 (1074)
Q Consensus 853 SGS~DGtIrIWDl~tg~~~~~~ 874 (1074)
.-....++.+|+..+|+.....
T Consensus 130 aIh~ss~lvLwntdtG~k~Wk~ 151 (1062)
T KOG1912|consen 130 AIHGSSTLVLWNTDTGEKFWKY 151 (1062)
T ss_pred EecCCcEEEEEEccCCceeecc
Confidence 6677789999999999865433
No 304
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=97.70 E-value=0.0013 Score=88.95 Aligned_cols=304 Identities=13% Similarity=0.116 Sum_probs=198.0
Q ss_pred HHHHHHHHhccCCCCceeccchHHHHHHHHHHHhcCcchhhhhhhHHhhHhhhhcchhhhhhhhhcCCCchHHHHHHhhc
Q 001455 277 VEVTTLYKMLNSKTGVKYDMLQDVILEQLLTAISASKEETVIRASVSILTTIILANESVIEDIKKKGLRLSDLATALKRN 356 (1074)
Q Consensus 277 ~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~e~~~~s~~~~v~~~~v~il~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~ 356 (1074)
-.+..+|..+.++++....+..-..|.-|++-|..+ ++++++.++..|.-+...++..++.|.+.| -+-+|..+|+++
T Consensus 423 ~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~-s~~iQ~~A~~~L~nLa~~ndenr~aIieaG-aIP~LV~LL~s~ 500 (2102)
T PLN03200 423 ELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLS-SEQQQEYAVALLAILTDEVDESKWAITAAG-GIPPLVQLLETG 500 (2102)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCC-CHHHHHHHHcCC
Confidence 355666666666555555566666788888888865 679999999998999889999999999988 789999999874
Q ss_pred ---ch-hhHHHHHhcCCChhh----hhhccchhHHHHHHhccccccCcccccccCchhhHHHHHHHHhhccccc------
Q 001455 357 ---VP-EAAILIYLIKPSPTE----IKTLELLPTLVEVICTSKLYKGKLESVRLTPPAASLMIIEVLVTAFDYA------ 422 (1074)
Q Consensus 357 ---~~-~a~vl~~l~~~~~~~----~~~~~~~~~l~~v~~~~~~~~~~~~~~~~~p~~aa~~~l~~ll~~~d~~------ 422 (1074)
+. +|+.-+.=|--...| +.+..-+|.|+++|.+++... +..|...|-.|+.+.|..
T Consensus 501 ~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~----------q~~Aa~AL~nLi~~~d~~~I~~Lv 570 (2102)
T PLN03200 501 SQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKG----------QEIAAKTLTKLVRTADAATISQLT 570 (2102)
T ss_pred CHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHH----------HHHHHHHHHHHHhccchhHHHHHH
Confidence 44 555555544322222 335688999999999875431 133333333332221110
Q ss_pred -------cch-hh-hhh-----------------hcchhhHhHHHHHHhcCChHHHHHHHHHHHhhhhccCcchhHHHhh
Q 001455 423 -------TNN-MH-LAA-----------------INSPRVLCGLLDVARHQNLEELISLATILVKCIQFDGQCRKYLSEF 476 (1074)
Q Consensus 423 -------~~~-~~-~~~-----------------~~s~~~l~~l~~~~~~~~~~e~~~~~~il~~C~~~dg~cr~~ia~~ 476 (1074)
.+. .+ +.. ....++|+.|.+-++.|+.+.|..|+.+|.....-....+..+...
T Consensus 571 ~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~a 650 (2102)
T PLN03200 571 ALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATD 650 (2102)
T ss_pred HHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHc
Confidence 000 11 100 1135799999999999999999999999986665554545556666
Q ss_pred cCCcchhhhhhcCCchhHHHHHHHHHHHhccCchhhHHHHHHhhccCchhHHHHHHHHhhcccchhhHHHHHHHhhhccc
Q 001455 477 TAVAPLACLLQSGEKRAIMIALEFFHEILRIPRSSAIDLLQRIHKEGNINILHILKLSLQQLQSDYQLLAANLLLQLDTL 556 (1074)
Q Consensus 477 ~~~~~~~~ll~~~~~~~~~~a~~~l~ell~l~r~~~~~~l~~~~~~~~~~~mh~ll~~lq~~~~~~~~~~a~lllqldll 556 (1074)
=-..|+++||.+++...+..|-.-|.-|..-.+. .+.... -+.|++-. |+-.|.....+-.-.++.-|- -++
T Consensus 651 gaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~--~q~~~~-v~~GaV~p---L~~LL~~~d~~v~e~Al~ALa--nLl 722 (2102)
T PLN03200 651 EIINPCIKLLTNNTEAVATQSARALAALSRSIKE--NRKVSY-AAEDAIKP---LIKLAKSSSIEVAEQAVCALA--NLL 722 (2102)
T ss_pred CCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCH--HHHHHH-HHcCCHHH---HHHHHhCCChHHHHHHHHHHH--HHH
Confidence 7799999999999877777766666666653332 222222 34666555 444444443332222222221 133
Q ss_pred cCCCCC-CcchHHHHHHHHHHHhccCChhhHHHHHHHHHhcCcccc
Q 001455 557 ENTTGK-SVFTEEAMQVILKAVASEESSTMQLLSSFILSNIGGTFS 601 (1074)
Q Consensus 557 ~~p~~~-s~yreea~~~~~~~l~~~~~~~~q~~~~~~l~~l~g~fs 601 (1074)
.+|... .+-.+.++..|++-|++. +++.+..||.||..|.=+|+
T Consensus 723 ~~~e~~~ei~~~~~I~~Lv~lLr~G-~~~~k~~Aa~AL~~L~~~~~ 767 (2102)
T PLN03200 723 SDPEVAAEALAEDIILPLTRVLREG-TLEGKRNAARALAQLLKHFP 767 (2102)
T ss_pred cCchHHHHHHhcCcHHHHHHHHHhC-ChHHHHHHHHHHHHHHhCCC
Confidence 455433 334578899999999876 68889999999988887776
No 305
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.68 E-value=0.013 Score=66.05 Aligned_cols=180 Identities=16% Similarity=0.147 Sum_probs=107.1
Q ss_pred EEEcCCCCEEEEEe-----CCCeEEEEEccCCceEEEEEeccCCCe--EEEccCCCeEEEEe------------------
Q 001455 842 FSLFEPGESLLSGS-----ADKTIGVWQMVQRKLELIEVIATKEPI--RKLDTYGKTIFAST------------------ 896 (1074)
Q Consensus 842 LafSpdg~~LaSGS-----~DGtIrIWDl~tg~~~~~~~~~h~~~V--~s~s~dg~~L~sgS------------------ 896 (1074)
-.|++||++|++.- ..|.|-|||...+-.....+..+.-.- ..+.+++..|+++.
T Consensus 56 g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~t 135 (305)
T PF07433_consen 56 GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDT 135 (305)
T ss_pred EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhh
Confidence 47999999999864 358899999984322222222222111 23578887766662
Q ss_pred cCCeEEEEeCC-Ccee-e--ee---cCCCeEEEEEe-CCEEEEEECC-C-----cEEEEEccCCc-eeeeccccccccCC
Q 001455 897 QGHRMKVIDSS-RTLK-D--IY---RSKGIKSMSVV-QGKIYIGCMD-S-----SIQELAVSNNV-EREIKAPFKSWRLQ 961 (1074)
Q Consensus 897 ~DgtI~VWDl~-~~l~-~--l~---~~~~V~sLa~s-dgkLlaGs~D-g-----sI~IwDl~tg~-~~~i~~~~r~~~~h 961 (1074)
.+.++...|.. +.+. . +. +.-+++.+++. +|.++.|... | .=-+.-.+.+. ......+...|..-
T Consensus 136 M~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l 215 (305)
T PF07433_consen 136 MQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRL 215 (305)
T ss_pred cCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhh
Confidence 11222333322 2111 1 11 12358888886 7777766531 1 11122222222 22222233344555
Q ss_pred CCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEccCCCCCeEEEEEecCCCEEEEEE
Q 001455 962 SKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNS 1024 (1074)
Q Consensus 962 ~~~I~sL~~spd~i~las~S~dDgtI~IWDl~t~~~i~~l~gH~~~VtsLafSPDG~~LaSGS 1024 (1074)
...+-++++++++.+++.++|.++.+.+||..++..+... .-..+..++..+++ +++|.+
T Consensus 216 ~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~--~l~D~cGva~~~~~-f~~ssG 275 (305)
T PF07433_consen 216 NGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSV--PLPDACGVAPTDDG-FLVSSG 275 (305)
T ss_pred CCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeecc--ccCceeeeeecCCc-eEEeCC
Confidence 7899999999999999889999999999999999987655 23346667777776 666655
No 306
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.66 E-value=0.066 Score=58.60 Aligned_cols=215 Identities=14% Similarity=0.089 Sum_probs=127.3
Q ss_pred EEEEe--CC-EEEEEECCCcEEEEECCCCCeeEEEEeccCCCCEEEEEEc-CCCCEEEEEeCCCeEEEEEccCCceEEEE
Q 001455 799 ALIYY--KG-LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLF-EPGESLLSGSADKTIGVWQMVQRKLELIE 874 (1074)
Q Consensus 799 sLafS--~~-~LaSGs~DGtVrIWDl~t~~~~~i~tl~gH~~~VtsLafS-pdg~~LaSGS~DGtIrIWDl~tg~~~~~~ 874 (1074)
++.|. ++ ++++-...+.|..|+..++... ...+ . . ...+++. +++ .++.+..++ +.++|..+++.....
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~-~~~~--~-~-~~G~~~~~~~g-~l~v~~~~~-~~~~d~~~g~~~~~~ 76 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVE-VIDL--P-G-PNGMAFDRPDG-RLYVADSGG-IAVVDPDTGKVTVLA 76 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEE-EEES--S-S-EEEEEEECTTS-EEEEEETTC-EEEEETTTTEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEE-EEec--C-C-CceEEEEccCC-EEEEEEcCc-eEEEecCCCcEEEEe
Confidence 45676 34 5666667899999999987532 2222 1 2 6777777 564 555555555 456699998765443
Q ss_pred Eec-cC-CCe--E--EEccCCCeEEEEecC--------CeEEEEeCCCceeeee-cCCCeEEEEEe-CCE-EE-EEECCC
Q 001455 875 VIA-TK-EPI--R--KLDTYGKTIFASTQG--------HRMKVIDSSRTLKDIY-RSKGIKSMSVV-QGK-IY-IGCMDS 936 (1074)
Q Consensus 875 ~~~-h~-~~V--~--s~s~dg~~L~sgS~D--------gtI~VWDl~~~l~~l~-~~~~V~sLa~s-dgk-Ll-aGs~Dg 936 (1074)
... .. ... . .+.++|+..++.... |.|..++..+...... .-.....++|+ +++ ++ +-+..+
T Consensus 77 ~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~ 156 (246)
T PF08450_consen 77 DLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPDGKVTVVADGLGFPNGIAFSPDGKTLYVADSFNG 156 (246)
T ss_dssp EEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETTSEEEEEEEEESSEEEEEEETTSSEEEEEETTTT
T ss_pred eccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCCCeEEEEecCcccccceEECCcchheeecccccc
Confidence 332 11 112 2 367888865555433 5577777774433333 34457789997 665 54 466788
Q ss_pred cEEEEEccCCce-eeeccccccccCCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEccCCCCCeEEEEEe-
Q 001455 937 SIQELAVSNNVE-REIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVV- 1014 (1074)
Q Consensus 937 sI~IwDl~tg~~-~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S~dDgtI~IWDl~t~~~i~~l~gH~~~VtsLafS- 1014 (1074)
.|..|++..... .........+.......-.+++..++...++.. ..+.|.++|.+ |+.+..+.-....+++++|.
T Consensus 157 ~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~-~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fgg 234 (246)
T PF08450_consen 157 RIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADW-GGGRIVVFDPD-GKLLREIELPVPRPTNCAFGG 234 (246)
T ss_dssp EEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEE-TTTEEEEEETT-SCEEEEEE-SSSSEEEEEEES
T ss_pred eeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEc-CCCEEEEECCC-ccEEEEEcCCCCCEEEEEEEC
Confidence 899999874322 111100011111123477888988776555433 57899999988 77666665555689999995
Q ss_pred cCCCEEEE
Q 001455 1015 EDFIYLNY 1022 (1074)
Q Consensus 1015 PDG~~LaS 1022 (1074)
|+...|..
T Consensus 235 ~~~~~L~v 242 (246)
T PF08450_consen 235 PDGKTLYV 242 (246)
T ss_dssp TTSSEEEE
T ss_pred CCCCEEEE
Confidence 66555544
No 307
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=97.64 E-value=0.0047 Score=72.09 Aligned_cols=225 Identities=10% Similarity=0.121 Sum_probs=140.1
Q ss_pred EEEEe--CCEEEEEECCCcEEEEECCCCCee--EEEEeccCCCCEEEEEEcCCCCE--EE-----EEeCCCeEEEEEccC
Q 001455 799 ALIYY--KGLLCSGFSDGSIKMWDIKKQSAM--LVWDVKEHRKAVTSFSLFEPGES--LL-----SGSADKTIGVWQMVQ 867 (1074)
Q Consensus 799 sLafS--~~~LaSGs~DGtVrIWDl~t~~~~--~i~tl~gH~~~VtsLafSpdg~~--La-----SGS~DGtIrIWDl~t 867 (1074)
-+.|+ +.++|-- ....++|+++ ++... +...++ ...|....|+|.|+. |+ .++.++++++|.+..
T Consensus 136 ~~k~s~~D~y~ARv-v~~sl~i~e~-t~n~~~~p~~~lr--~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~ 211 (561)
T COG5354 136 VLKFSIDDKYVARV-VGSSLYIHEI-TDNIEEHPFKNLR--PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPK 211 (561)
T ss_pred eeeeeecchhhhhh-ccCeEEEEec-CCccccCchhhcc--ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccC
Confidence 34565 4444322 4456899997 33321 222222 367889999997554 44 357789999999987
Q ss_pred CceEEEEEe-ccCCCeEEEccCCCeEEEEe-----------cCCeEEEEeCCC-ceeee-ecCCCeEEEEEe--CCE--E
Q 001455 868 RKLELIEVI-ATKEPIRKLDTYGKTIFAST-----------QGHRMKVIDSSR-TLKDI-YRSKGIKSMSVV--QGK--I 929 (1074)
Q Consensus 868 g~~~~~~~~-~h~~~V~s~s~dg~~L~sgS-----------~DgtI~VWDl~~-~l~~l-~~~~~V~sLa~s--dgk--L 929 (1074)
+..+..... ...+.-..+.+.|+++++.. ....+.++++.+ ..... ...+.|...+|. ..+ +
T Consensus 212 ~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~v 291 (561)
T COG5354 212 NSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEKDLKDPVHDFTWEPLSSRFAV 291 (561)
T ss_pred CCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccccceeccccccceeeeecccCCceeE
Confidence 665443322 12222223566777665441 124677888773 22332 336789999994 333 4
Q ss_pred EEEECCCcEEEEEccCCceeeeccccccccCCCCCeEEEEEcCCceEEEEEe--cCCCeEEEEECCCCCeEE-EccCCCC
Q 001455 930 YIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSS--VEGSNIKEWRRHRKPQIS-IAPEKGT 1006 (1074)
Q Consensus 930 laGs~DgsI~IwDl~tg~~~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S--~dDgtI~IWDl~t~~~i~-~l~gH~~ 1006 (1074)
++|-.+..+.++|++++ .... .....-+.+.|+|.+.+++..+ .-.|.+-+||......+. .+.+..
T Consensus 292 i~g~~pa~~s~~~lr~N-l~~~--------~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n- 361 (561)
T COG5354 292 ISGYMPASVSVFDLRGN-LRFY--------FPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLN- 361 (561)
T ss_pred Eecccccceeecccccc-eEEe--------cCCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecCC-
Confidence 45778999999999885 2221 2244556778888888776633 334789999976654433 554433
Q ss_pred CeEEEEEecCCCEEEEEE------CCCcEEEEECCCCc
Q 001455 1007 TIQAMAVVEDFIYLNYNS------SASSLQIWLRGTQQ 1038 (1074)
Q Consensus 1007 ~VtsLafSPDG~~LaSGS------~DGtIrIWDl~tg~ 1038 (1074)
..-+.|+|||+|+.+.. .|..|.|||+....
T Consensus 362 -~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~ 398 (561)
T COG5354 362 -TSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAK 398 (561)
T ss_pred -ceEeeccCCceEEEecCCCcccccCcceEEEEecCch
Confidence 45578999999987754 47889999976543
No 308
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.63 E-value=0.027 Score=61.25 Aligned_cols=264 Identities=11% Similarity=0.083 Sum_probs=137.0
Q ss_pred CCcEEEEEEe-CCEEEEEECCCcEEEEECCCCCeeEEEEeccCCCCEE-EEEEcCCCCEEEEEeCCCeEEEEEccCCceE
Q 001455 794 SGAVTALIYY-KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVT-SFSLFEPGESLLSGSADKTIGVWQMVQRKLE 871 (1074)
Q Consensus 794 ~~~VtsLafS-~~~LaSGs~DGtVrIWDl~t~~~~~i~tl~gH~~~Vt-sLafSpdg~~LaSGS~DGtIrIWDl~tg~~~ 871 (1074)
.+.|-+-+.- +++++.|...|.+++-+.+++.. ++.+... +.|. .....+++..+..|+.|++....|.++..+.
T Consensus 52 g~RiE~sa~vvgdfVV~GCy~g~lYfl~~~tGs~--~w~f~~~-~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cV 128 (354)
T KOG4649|consen 52 GVRIECSAIVVGDFVVLGCYSGGLYFLCVKTGSQ--IWNFVIL-ETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCV 128 (354)
T ss_pred CceeeeeeEEECCEEEEEEccCcEEEEEecchhh--eeeeeeh-hhhccceEEcCCCceEEEecCCCcEEEecccccceE
Confidence 3445555555 88999999999999999999854 4444322 2222 2334678999999999999999999987665
Q ss_pred EEEEeccCCCe-EEEccCCCeEEEEecCCeEEEEeCC-Cceeeeec---CCCeE--------EEEE--eCCEEEEEECCC
Q 001455 872 LIEVIATKEPI-RKLDTYGKTIFASTQGHRMKVIDSS-RTLKDIYR---SKGIK--------SMSV--VQGKIYIGCMDS 936 (1074)
Q Consensus 872 ~~~~~~h~~~V-~s~s~dg~~L~sgS~DgtI~VWDl~-~~l~~l~~---~~~V~--------sLa~--sdgkLlaGs~Dg 936 (1074)
.....+....+ .++.+....++++...|.+.--..+ .....+.. .+++. ++.. -||.+.+-+..|
T Consensus 129 ykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~~~~~~~~w~~~~~~PiF~splcv~~sv~i~~VdG~l~~f~~sG 208 (354)
T KOG4649|consen 129 YKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKNPYSSTEFWAATRFGPIFASPLCVGSSVIITTVDGVLTSFDESG 208 (354)
T ss_pred EecccCCceeccceecCCCceEEEEeccceEEEEccCCCCcceehhhhcCCccccCceeccceEEEEEeccEEEEEcCCC
Confidence 54332222111 1356644555555555554444333 11111111 11111 1222 266665544445
Q ss_pred cEEEEEccCCceeeeccccccccCCCCCe-EEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEccCCCCCeEEEEEe-
Q 001455 937 SIQELAVSNNVEREIKAPFKSWRLQSKPI-NSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVV- 1014 (1074)
Q Consensus 937 sI~IwDl~tg~~~~i~~~~r~~~~h~~~I-~sL~~spd~i~las~S~dDgtI~IWDl~t~~~i~~l~gH~~~VtsLafS- 1014 (1074)
-++|...++..+...+. ...|. ..+.+-.++-+.... +.. .-.+|..++|...+...... ...+++
T Consensus 209 -~qvwr~~t~GpIf~~Pc------~s~Ps~q~i~~~~~~Cf~~~~-p~~-ghL~w~~~~g~t~~vy~~p~---l~F~~h~ 276 (354)
T KOG4649|consen 209 -RQVWRPATKGPIFMEPC------ESRPSCQQISLENENCFCAPL-PIA-GHLLWATQSGTTLHVYLSPK---LRFDLHS 276 (354)
T ss_pred -cEEEeecCCCceecccc------cCCCcceEEEEecCCeEEEec-ccc-ceEEEEecCCcEEEEEeCcc---cceeccC
Confidence 45666665443222111 01122 223333333333322 222 24567777664433321111 012221
Q ss_pred c---CCCEEEEEECCCcEEEEECCC---------CcE--EEEEeCCCCeEE--EEEcCCEEEEEECCCcEEEEec
Q 001455 1015 E---DFIYLNYNSSASSLQIWLRGT---------QQK--VGRISAGSKITS--LLTANDIVLCGTETGLIKGWIP 1073 (1074)
Q Consensus 1015 P---DG~~LaSGS~DGtIrIWDl~t---------g~~--l~tL~~hs~Vts--La~dg~~LaSGs~DG~IrIWdi 1073 (1074)
| ..+++..++.||.+.|--... |+. +..++-.+.|.+ +-. +..|+.|+.|..|+-||.
T Consensus 277 ~~~S~~~ll~~~s~dgkv~il~~~~sl~~~~s~~g~lq~~~~~el~~eIFsSPvii-~grl~igcRDdYv~cldl 350 (354)
T KOG4649|consen 277 PGISYPKLLRRSSGDGKVMILMTSKSLAEISSNGGELQNLEAIELSNEIFSSPVII-DGRLLIGCRDDYVRCLDL 350 (354)
T ss_pred CCCcchhhhhhhcCCCcEEEEEecccccccccCCCccceEEEeecCcccccCCeEE-ccEEEEEEccCeEEEEec
Confidence 2 245677788899988873322 221 222222222222 112 346888999999999985
No 309
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.63 E-value=0.034 Score=62.78 Aligned_cols=219 Identities=15% Similarity=0.174 Sum_probs=135.1
Q ss_pred EEEEEEcCCCC-EEEEEeCCCe-EEEEEccCCceEEEEEeccCCCe---EEEccCCCeEEEEec-----CCeEEEEeCCC
Q 001455 839 VTSFSLFEPGE-SLLSGSADKT-IGVWQMVQRKLELIEVIATKEPI---RKLDTYGKTIFASTQ-----GHRMKVIDSSR 908 (1074)
Q Consensus 839 VtsLafSpdg~-~LaSGS~DGt-IrIWDl~tg~~~~~~~~~h~~~V---~s~s~dg~~L~sgS~-----DgtI~VWDl~~ 908 (1074)
...++.+|+.. .++.+-.-|+ ..+||..+++............. -.|+++|+++++.-+ .|.|-|||...
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~ 86 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAAR 86 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcC
Confidence 34678888544 4667777665 56899999886543332222222 258999999999844 47899999984
Q ss_pred ceeeeec--CC--CeEEEEE-eCC-EEEE--EE----------------CCCcEEEEEccCCceeeeccccccc--cCCC
Q 001455 909 TLKDIYR--SK--GIKSMSV-VQG-KIYI--GC----------------MDSSIQELAVSNNVEREIKAPFKSW--RLQS 962 (1074)
Q Consensus 909 ~l~~l~~--~~--~V~sLa~-sdg-kLla--Gs----------------~DgsI~IwDl~tg~~~~i~~~~r~~--~~h~ 962 (1074)
....+.. .. .-..+.+ +|| .++. |+ .+.++...|..+|+..... .+ ..|.
T Consensus 87 ~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~----~Lp~~~~~ 162 (305)
T PF07433_consen 87 GYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQV----ELPPDLHQ 162 (305)
T ss_pred CcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeee----ecCccccc
Confidence 3333221 12 2334444 366 3433 22 1445666677777654431 11 3356
Q ss_pred CCeEEEEEcCCceEEEEEecCCC------eEEEEECCCCCeEEEcc-------CCCCCeEEEEEecCCCEEEEEE-CCCc
Q 001455 963 KPINSLVVYKDWLYSASSSVEGS------NIKEWRRHRKPQISIAP-------EKGTTIQAMAVVEDFIYLNYNS-SASS 1028 (1074)
Q Consensus 963 ~~I~sL~~spd~i~las~S~dDg------tI~IWDl~t~~~i~~l~-------gH~~~VtsLafSPDG~~LaSGS-~DGt 1028 (1074)
..|..+++.+++...+....++- .+-+++.... ...+. .-.+.+-+|+++++|.+++..| .-|.
T Consensus 163 lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~--~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~ 240 (305)
T PF07433_consen 163 LSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGA--LRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGR 240 (305)
T ss_pred cceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCc--ceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCE
Confidence 78999999999988776653221 3444443332 22221 2346799999999999887666 6789
Q ss_pred EEEEECCCCcEEEEEeCCCCeEEEEEcC-CEEEEEEC
Q 001455 1029 LQIWLRGTQQKVGRISAGSKITSLLTAN-DIVLCGTE 1064 (1074)
Q Consensus 1029 IrIWDl~tg~~l~tL~~hs~VtsLa~dg-~~LaSGs~ 1064 (1074)
+.+||..++..+...... .+..++..+ .+++|.+.
T Consensus 241 ~~~~d~~tg~~~~~~~l~-D~cGva~~~~~f~~ssG~ 276 (305)
T PF07433_consen 241 VAVWDAATGRLLGSVPLP-DACGVAPTDDGFLVSSGQ 276 (305)
T ss_pred EEEEECCCCCEeeccccC-ceeeeeecCCceEEeCCC
Confidence 999999999998776543 345566543 35555443
No 310
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=97.56 E-value=0.00013 Score=81.26 Aligned_cols=144 Identities=10% Similarity=0.081 Sum_probs=108.2
Q ss_pred EEEe---CCEEEEEECCCcEEEEECCCCCeeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEccCC---ceEEE
Q 001455 800 LIYY---KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQR---KLELI 873 (1074)
Q Consensus 800 LafS---~~~LaSGs~DGtVrIWDl~t~~~~~i~tl~gH~~~VtsLafSpdg~~LaSGS~DGtIrIWDl~tg---~~~~~ 873 (1074)
++|+ -++-++.|.+..|-+-|+.++-. ..|. .++.|.++.|...++.++.|...|.|...|++.+ +..+.
T Consensus 217 CawSlni~gyhfs~G~sqqv~L~nvetg~~---qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a 292 (425)
T KOG2695|consen 217 CAWSLNIMGYHFSVGLSQQVLLTNVETGHQ---QSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCA 292 (425)
T ss_pred hhhhhccceeeecccccceeEEEEeecccc---cccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcce
Confidence 3565 23447777788899999998742 3443 6778999999999999999999999999999874 33455
Q ss_pred EEeccCCCeEEE---ccCCCeEEEEecCCeEEEEeCC--Cc---eeeeecCCCeEEEEE-------eCCEEEEEECCCcE
Q 001455 874 EVIATKEPIRKL---DTYGKTIFASTQGHRMKVIDSS--RT---LKDIYRSKGIKSMSV-------VQGKIYIGCMDSSI 938 (1074)
Q Consensus 874 ~~~~h~~~V~s~---s~dg~~L~sgS~DgtI~VWDl~--~~---l~~l~~~~~V~sLa~-------sdgkLlaGs~DgsI 938 (1074)
...-|...|+++ ..+++++++.+.+|+|++||.+ ++ +....+ .|...+. .+|.+++++.|...
T Consensus 293 ~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeG--HvN~~a~l~~~v~~eeg~I~s~GdDcyt 370 (425)
T KOG2695|consen 293 QRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEG--HVNLSAYLPAHVKEEEGSIFSVGDDCYT 370 (425)
T ss_pred EEEEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeec--ccccccccccccccccceEEEccCeeEE
Confidence 666788888874 4688899999999999999988 22 223322 2222222 26779999999999
Q ss_pred EEEEccCCcee
Q 001455 939 QELAVSNNVER 949 (1074)
Q Consensus 939 ~IwDl~tg~~~ 949 (1074)
++|.+..|...
T Consensus 371 RiWsl~~ghLl 381 (425)
T KOG2695|consen 371 RIWSLDSGHLL 381 (425)
T ss_pred EEEecccCcee
Confidence 99999987654
No 311
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=97.56 E-value=0.0016 Score=80.18 Aligned_cols=190 Identities=12% Similarity=0.134 Sum_probs=126.7
Q ss_pred CCEEEEEECCCcEEEEECCCCCeeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEccCCceEEEEEeccCCCeE
Q 001455 804 KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATKEPIR 883 (1074)
Q Consensus 804 ~~~LaSGs~DGtVrIWDl~t~~~~~i~tl~gH~~~VtsLafSpdg~~LaSGS~DGtIrIWDl~tg~~~~~~~~~h~~~V~ 883 (1074)
+..++.|+--..+..+|..+.+.. ....-..+.|+-++. +++.+.+|...|+|.+-|.++.+.+. .+..|.+.|.
T Consensus 147 ~~~~i~Gg~Q~~li~~Dl~~~~e~--r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~ih-t~~aHs~siS 221 (1118)
T KOG1275|consen 147 PSTLIMGGLQEKLIHIDLNTEKET--RTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIH-TFDAHSGSIS 221 (1118)
T ss_pred Ccceeecchhhheeeeecccceee--eeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCceee-eeecccccee
Confidence 346777777777888888877543 222222334666664 78889999999999999998877544 5678999999
Q ss_pred EEccCCCeEEEEecCCeEEEEeCCCceeeeecCCCeEEEEEeCCEEEEEECCCcEEEEEccCCceeeeccccccccCCCC
Q 001455 884 KLDTYGKTIFASTQGHRMKVIDSSRTLKDIYRSKGIKSMSVVQGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSK 963 (1074)
Q Consensus 884 s~s~dg~~L~sgS~DgtI~VWDl~~~l~~l~~~~~V~sLa~sdgkLlaGs~DgsI~IwDl~tg~~~~i~~~~r~~~~h~~ 963 (1074)
.|+..|+.+++++......-+ ..|..|.+||++.-+... |+. .+.
T Consensus 222 DfDv~GNlLitCG~S~R~~~l----------------------------~~D~FvkVYDLRmmral~---PI~---~~~- 266 (1118)
T KOG1275|consen 222 DFDVQGNLLITCGYSMRRYNL----------------------------AMDPFVKVYDLRMMRALS---PIQ---FPY- 266 (1118)
T ss_pred eeeccCCeEEEeecccccccc----------------------------cccchhhhhhhhhhhccC---Ccc---ccc-
Confidence 999999999999875422111 237788999998743321 111 111
Q ss_pred CeEEEEEcCCceEEEEEecCCCeEEEEEC---CCCC-eEEEccCCCCCeEEEEEecCCCEEEEEECCCcEEEEE
Q 001455 964 PINSLVVYKDWLYSASSSVEGSNIKEWRR---HRKP-QISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWL 1033 (1074)
Q Consensus 964 ~I~sL~~spd~i~las~S~dDgtI~IWDl---~t~~-~i~~l~gH~~~VtsLafSPDG~~LaSGS~DGtIrIWD 1033 (1074)
...-+.|+|.....++..+..|...+-|. .+.. -+..+...+..+.++++|++|..++.|..+|.|.+|.
T Consensus 267 ~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 267 GPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred CchhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 11445667664322222224577888773 2221 2333434455699999999999999999999999997
No 312
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.55 E-value=0.0031 Score=71.80 Aligned_cols=239 Identities=12% Similarity=0.098 Sum_probs=133.9
Q ss_pred ecCCCCCcEEEEEEe---CCEEEEEECCCcEEEEECCCCCeeEEEEeccCCCCEEEEEEcCCCCE-EEEEeCCCeEEEEE
Q 001455 789 ASHKCSGAVTALIYY---KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGES-LLSGSADKTIGVWQ 864 (1074)
Q Consensus 789 ~~~gH~~~VtsLafS---~~~LaSGs~DGtVrIWDl~t~~~~~i~tl~gH~~~VtsLafSpdg~~-LaSGS~DGtIrIWD 864 (1074)
..++|...|..++|+ .|++..++-+.+|+|.|+.+... +..+..| ..+++++|.-|..+ |+.|-..|.|.|||
T Consensus 188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~--vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD 264 (463)
T KOG1645|consen 188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCV--VSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYD 264 (463)
T ss_pred cccccchhhhhhccCccccceeeeeccCceEEEEeccccee--eeheecc-CCceeeeeccCCcceeEEeccCceEEEEE
Confidence 445789999999999 45899999999999999998754 5556566 88999999977665 88899999999999
Q ss_pred ccCCceEEEEEe--ccCCCeEEEc--------cCCCeEEEEecCCeEEEEeCCCce----eee--ecCCCeEEEEEe--C
Q 001455 865 MVQRKLELIEVI--ATKEPIRKLD--------TYGKTIFASTQGHRMKVIDSSRTL----KDI--YRSKGIKSMSVV--Q 926 (1074)
Q Consensus 865 l~tg~~~~~~~~--~h~~~V~s~s--------~dg~~L~sgS~DgtI~VWDl~~~l----~~l--~~~~~V~sLa~s--d 926 (1074)
++..+-...... -...+|..++ +.+..++..+.+ ...|++.... ... ...+...++.+. .
T Consensus 265 ~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cismqy~~~s 342 (463)
T KOG1645|consen 265 MRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICISMQYHGVS 342 (463)
T ss_pred ccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcceeeeeecCcc
Confidence 986543221111 1334455433 223334333332 3456554211 111 112223334432 2
Q ss_pred CEEEEEECC-C---cEE----EEEccCCceeeeccccccccCCCC---CeEEEEEcCCceEEEEEecCCCeEEEEECCCC
Q 001455 927 GKIYIGCMD-S---SIQ----ELAVSNNVEREIKAPFKSWRLQSK---PINSLVVYKDWLYSASSSVEGSNIKEWRRHRK 995 (1074)
Q Consensus 927 gkLlaGs~D-g---sI~----IwDl~tg~~~~i~~~~r~~~~h~~---~I~sL~~spd~i~las~S~dDgtI~IWDl~t~ 995 (1074)
++++..... . +++ --|..+|...--..+.. +..... .-..+.-.++..+++..+.+-+.+.+||..+.
T Consensus 343 nh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~-~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s~ 421 (463)
T KOG1645|consen 343 NHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTY-FGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHSF 421 (463)
T ss_pred ceEEEEecCCCCCccceeeeeeeccccCceeeeecccc-cCCcccccccccceeccccccEEEEecCCcceeEEeccchh
Confidence 333332211 0 000 01111111111000000 000000 11122233455666666645679999999999
Q ss_pred CeEEEccCCCCCeEEEEEec-C-CCEEEEEECCCcEEEEECC
Q 001455 996 PQISIAPEKGTTIQAMAVVE-D-FIYLNYNSSASSLQIWLRG 1035 (1074)
Q Consensus 996 ~~i~~l~gH~~~VtsLafSP-D-G~~LaSGS~DGtIrIWDl~ 1035 (1074)
..++++.-. .+|..++... + +.||+.-. |..++||..+
T Consensus 422 evvQ~l~~~-epv~Dicp~~~n~~syLa~LT-d~~v~Iyk~e 461 (463)
T KOG1645|consen 422 EVVQTLALS-EPVLDICPNDTNGSSYLALLT-DDRVHIYKNE 461 (463)
T ss_pred heeeecccC-cceeecceeecCCcchhhhee-cceEEEEecC
Confidence 998888544 6788877653 3 34555544 6778888654
No 313
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.54 E-value=0.0026 Score=77.69 Aligned_cols=137 Identities=14% Similarity=0.190 Sum_probs=96.0
Q ss_pred CCEEEEEECCCcEEEEECCCCCeeEEEEeccCCCCEEEEEEcCC-----CCEEEEEeCCCeEEEEEccC-CceEEEEEec
Q 001455 804 KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEP-----GESLLSGSADKTIGVWQMVQ-RKLELIEVIA 877 (1074)
Q Consensus 804 ~~~LaSGs~DGtVrIWDl~t~~~~~i~tl~gH~~~VtsLafSpd-----g~~LaSGS~DGtIrIWDl~t-g~~~~~~~~~ 877 (1074)
|.+++||+.||+|.|-.+.+.+......+ ..++.+++++|+ .+.+++||.-| +.++.-+= |.........
T Consensus 83 Gey~asCS~DGkv~I~sl~~~~~~~~~df---~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~ 158 (846)
T KOG2066|consen 83 GEYVASCSDDGKVVIGSLFTDDEITQYDF---KRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSE 158 (846)
T ss_pred CceEEEecCCCcEEEeeccCCccceeEec---CCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeec
Confidence 56999999999999999988765333444 568999999998 45599999888 66654221 2222234556
Q ss_pred cCCCeEEEccCCCeEEEEecCCeEEEEeCCC-c-eeeeec-CCC------eEEEEEeCCEEEEEECCCcEEEEEccC
Q 001455 878 TKEPIRKLDTYGKTIFASTQGHRMKVIDSSR-T-LKDIYR-SKG------IKSMSVVQGKIYIGCMDSSIQELAVSN 945 (1074)
Q Consensus 878 h~~~V~s~s~dg~~L~sgS~DgtI~VWDl~~-~-l~~l~~-~~~------V~sLa~sdgkLlaGs~DgsI~IwDl~t 945 (1074)
..++|.++.++|++++.++.+| |+|||... . +..+.. ... -..+.|.+...+.-|+..+|++..++.
T Consensus 159 ~eG~I~~i~W~g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVIGW~d~v~i~~I~~ 234 (846)
T KOG2066|consen 159 GEGPIHSIKWRGNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVIGWGDSVKICSIKK 234 (846)
T ss_pred CccceEEEEecCcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEEecCCeEEEEEEec
Confidence 7889999999999999998877 89999872 2 222221 111 335667644444455667899988873
No 314
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.49 E-value=0.039 Score=67.11 Aligned_cols=238 Identities=10% Similarity=0.097 Sum_probs=132.8
Q ss_pred EEeC-CEEEEEECCCcEEEEECCCCCeeEEEEeccCCCC-----EE-EEEEcCCCCEEEEEe---------CCCeEEEEE
Q 001455 801 IYYK-GLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKA-----VT-SFSLFEPGESLLSGS---------ADKTIGVWQ 864 (1074)
Q Consensus 801 afS~-~~LaSGs~DGtVrIWDl~t~~~~~i~tl~gH~~~-----Vt-sLafSpdg~~LaSGS---------~DGtIrIWD 864 (1074)
.+.+ +.++.++.||.|.-+|.++++. +..+...... +. +..+. +..++.++ .+|.+...|
T Consensus 106 ~~~~~~~V~v~~~~g~v~AlD~~TG~~--~W~~~~~~~~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD 181 (488)
T cd00216 106 AYWDPRKVFFGTFDGRLVALDAETGKQ--VWKFGNNDQVPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYD 181 (488)
T ss_pred EEccCCeEEEecCCCeEEEEECCCCCE--eeeecCCCCcCcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEE
Confidence 3445 8899999999999999999865 4443322110 11 11221 23444443 468899999
Q ss_pred ccCCceEEEEEeccCC-------------------Ce---EEEccCCCeEEEEecCC------------------eEEEE
Q 001455 865 MVQRKLELIEVIATKE-------------------PI---RKLDTYGKTIFASTQGH------------------RMKVI 904 (1074)
Q Consensus 865 l~tg~~~~~~~~~h~~-------------------~V---~s~s~dg~~L~sgS~Dg------------------tI~VW 904 (1074)
..+|+........... .+ ..+++.+..++.++.++ .|.-+
T Consensus 182 ~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Al 261 (488)
T cd00216 182 VETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVAL 261 (488)
T ss_pred CCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEE
Confidence 9999876654332111 11 12334456777776554 67777
Q ss_pred eCCCceeeeec---CCC-----------eEEEEEeCC----EEEEEECCCcEEEEEccCCceeeeccccccccCCCCCeE
Q 001455 905 DSSRTLKDIYR---SKG-----------IKSMSVVQG----KIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPIN 966 (1074)
Q Consensus 905 Dl~~~l~~l~~---~~~-----------V~sLa~sdg----kLlaGs~DgsI~IwDl~tg~~~~i~~~~r~~~~h~~~I~ 966 (1074)
|...-...... ... +..+.-.++ .+++++.+|.+..+|..+|+..-..... ..
T Consensus 262 d~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~---------~~ 332 (488)
T cd00216 262 DADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV---------EQ 332 (488)
T ss_pred cCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee---------cc
Confidence 77622221111 110 111110123 2667889999999999998864432100 01
Q ss_pred EEEEcCCceEEEEE---------------ecCCCeEEEEECCCCCeEEEccCC--C------CCeEEEEEecCCCEEEEE
Q 001455 967 SLVVYKDWLYSASS---------------SVEGSNIKEWRRHRKPQISIAPEK--G------TTIQAMAVVEDFIYLNYN 1023 (1074)
Q Consensus 967 sL~~spd~i~las~---------------S~dDgtI~IWDl~t~~~i~~l~gH--~------~~VtsLafSPDG~~LaSG 1023 (1074)
.+...++.+|+.+. ...+|.+.-.|..+|+.+-..... . .+...-.....+..|+.|
T Consensus 333 ~~~~~~~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g 412 (488)
T cd00216 333 PMAYDPGLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAG 412 (488)
T ss_pred ccccCCceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEE
Confidence 12223333333211 113466777777777654333221 0 111110111256788888
Q ss_pred ECCCcEEEEECCCCcEEEEEeCCCCeEE
Q 001455 1024 SSASSLQIWLRGTQQKVGRISAGSKITS 1051 (1074)
Q Consensus 1024 S~DGtIrIWDl~tg~~l~tL~~hs~Vts 1051 (1074)
+.||.++.+|.++|+.+.+++..+.+.+
T Consensus 413 ~~dG~l~ald~~tG~~lW~~~~~~~~~a 440 (488)
T cd00216 413 AADGYFRAFDATTGKELWKFRTPSGIQA 440 (488)
T ss_pred CCCCeEEEEECCCCceeeEEECCCCceE
Confidence 9999999999999999999887666554
No 315
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=97.44 E-value=0.00059 Score=73.68 Aligned_cols=147 Identities=10% Similarity=0.069 Sum_probs=96.9
Q ss_pred EEEccCCCeEEEEecCCeEEEEeCCCceeeeecCCCeE-----EEEE-eCCEEEEEE------CCCcEEEEEccCCceee
Q 001455 883 RKLDTYGKTIFASTQGHRMKVIDSSRTLKDIYRSKGIK-----SMSV-VQGKIYIGC------MDSSIQELAVSNNVERE 950 (1074)
Q Consensus 883 ~s~s~dg~~L~sgS~DgtI~VWDl~~~l~~l~~~~~V~-----sLa~-sdgkLlaGs------~DgsI~IwDl~tg~~~~ 950 (1074)
...+..+..++++..||.+.+++.+... ...+.-.+. +..+ ..+.++..+ .-+..+.|+++..+...
T Consensus 95 ~~~s~~~t~V~~~~~dg~~~v~s~~~~~-~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~ 173 (319)
T KOG4714|consen 95 DACTMTDNRVCIGYADGSLAVFSTDKDL-ALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLI 173 (319)
T ss_pred ccccccCCceEecCCCceEEEEechHHH-hhhhhcccccccccccceeecccEEecCCcceEeeccceeeeccccccccc
Confidence 3455667789999999999999987421 111111111 1111 133333222 23345556554321110
Q ss_pred eccccccccCCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCC-eEEEccCCCCCeEEEEEec-CCCEEEEEECCCc
Q 001455 951 IKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKP-QISIAPEKGTTIQAMAVVE-DFIYLNYNSSASS 1028 (1074)
Q Consensus 951 i~~~~r~~~~h~~~I~sL~~spd~i~las~S~dDgtI~IWDl~t~~-~i~~l~gH~~~VtsLafSP-DG~~LaSGS~DGt 1028 (1074)
+ -......+++++-||....++.++.+||.+.+||.+... +...+..|..+++.+-|+| ++..|+++++||.
T Consensus 174 ---~---~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGs 247 (319)
T KOG4714|consen 174 ---P---SKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGS 247 (319)
T ss_pred ---c---cccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCc
Confidence 0 011234489999999888887777799999999987653 4556778999999999998 7889999999999
Q ss_pred EEEEECCC
Q 001455 1029 LQIWLRGT 1036 (1074)
Q Consensus 1029 IrIWDl~t 1036 (1074)
+--||..+
T Consensus 248 lw~wdas~ 255 (319)
T KOG4714|consen 248 LWHWDAST 255 (319)
T ss_pred EEEEcCCC
Confidence 99999765
No 316
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.42 E-value=0.014 Score=70.78 Aligned_cols=267 Identities=9% Similarity=0.041 Sum_probs=152.8
Q ss_pred cEEEEEEeCCEEEEEECCCcEEEEECCCCCeeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEccCCceEEE--
Q 001455 796 AVTALIYYKGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELI-- 873 (1074)
Q Consensus 796 ~VtsLafS~~~LaSGs~DGtVrIWDl~t~~~~~i~tl~gH~~~VtsLafSpdg~~LaSGS~DGtIrIWDl~tg~~~~~-- 873 (1074)
..+|++-.+.+++.|++-|.|++|+-.++.. ...+..+-.+.+..+..+++..++|.|+..|.|.++.+..+.....
T Consensus 37 ~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~-~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~ 115 (726)
T KOG3621|consen 37 KLTCVDATEEYLAMGSSAGSVYLYNRHTGEM-RKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDY 115 (726)
T ss_pred EEEEeecCCceEEEecccceEEEEecCchhh-hcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCccee
Confidence 3455555688999999999999999887753 2344445566777788899998899999999999998876432111
Q ss_pred ---EEeccCCCeEE--EccCCCeEEEEecCCeEEEEeCCCc-------eeeeecCCCeEEEEEeCCEEEEEECCCcEEEE
Q 001455 874 ---EVIATKEPIRK--LDTYGKTIFASTQGHRMKVIDSSRT-------LKDIYRSKGIKSMSVVQGKIYIGCMDSSIQEL 941 (1074)
Q Consensus 874 ---~~~~h~~~V~s--~s~dg~~L~sgS~DgtI~VWDl~~~-------l~~l~~~~~V~sLa~sdgkLlaGs~DgsI~Iw 941 (1074)
....|+..|++ |++++..+++|...|+|..-.++.. ...+.....|-.+.+.++.++.++.-.. .++
T Consensus 116 ~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q~~LLVStl~r~-~Lc 194 (726)
T KOG3621|consen 116 VTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQSYLLVSTLTRC-ILC 194 (726)
T ss_pred eccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecccceehHhhhhhh-hee
Confidence 11235667876 6788889999999999988877631 1112224456666666777554332222 234
Q ss_pred EccCCceeeeccccccccCCCCCeEEEEEcC-----CceEEEEEecCCCeEEEEECCC-CCeEEEcc-------------
Q 001455 942 AVSNNVEREIKAPFKSWRLQSKPINSLVVYK-----DWLYSASSSVEGSNIKEWRRHR-KPQISIAP------------- 1002 (1074)
Q Consensus 942 Dl~tg~~~~i~~~~r~~~~h~~~I~sL~~sp-----d~i~las~S~dDgtI~IWDl~t-~~~i~~l~------------- 1002 (1074)
++..+....+-. +. ..+..-...+|.| ....+.++-|. .++|..+- |..+++..
T Consensus 195 ~tE~eti~QIG~--k~--R~~~~~~GACF~~g~~~~q~~~IycaRPG---~RlWead~~G~V~~Thqfk~ala~~p~p~i 267 (726)
T KOG3621|consen 195 QTEAETITQIGK--KP--RKSLIDFGACFFPGQCKAQKPQIYCARPG---LRLWEADFAGEVIKTHQFKDALARPPAPEI 267 (726)
T ss_pred ecchhHHHHhcC--CC--cCCccccceEEeeccccCCCceEEEecCC---CceEEeecceeEEEeeehhhhhccCCCCcc
Confidence 443322211110 00 0010011122222 22233333221 45665431 22221110
Q ss_pred CCC-----------C-----CeEEEEEecCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCeEEEEEcCCEEEEEECCC
Q 001455 1003 EKG-----------T-----TIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAGSKITSLLTANDIVLCGTETG 1066 (1074)
Q Consensus 1003 gH~-----------~-----~VtsLafSPDG~~LaSGS~DGtIrIWDl~tg~~l~tL~~hs~VtsLa~dg~~LaSGs~DG 1066 (1074)
.+. . ....+.+-.++ .+.+-++-| |+|++.++.+.+.-..+.+.|..++-+++-|+.-..||
T Consensus 268 ~~~s~esp~~~~~~~~~q~ls~~k~~~l~~~-~vLa~te~G-iyv~d~~~~~v~l~se~~~DI~dVs~~~neiFvL~~d~ 345 (726)
T KOG3621|consen 268 PIRSLESPNQRSLPSGTQHLSLSKSSTLHSD-RVLAWTEVG-IYVFDSNNSQVYLWSEGGHDILDVSHCGNEIFVLNLDR 345 (726)
T ss_pred cCCCcCCccccCCCCCccccccceeEEeecc-eEEEeecce-EEEEEeccceEEEeecCCCceeEEeecCceEEEEecCC
Confidence 000 0 11111111222 344444444 88999888777766666677999999988888888888
Q ss_pred cEEEEec
Q 001455 1067 LIKGWIP 1073 (1074)
Q Consensus 1067 ~IrIWdi 1073 (1074)
.+++..+
T Consensus 346 ~l~~~sv 352 (726)
T KOG3621|consen 346 GLKVESV 352 (726)
T ss_pred ceeEEEe
Confidence 7766543
No 317
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=97.42 E-value=0.0098 Score=72.30 Aligned_cols=233 Identities=10% Similarity=0.053 Sum_probs=135.4
Q ss_pred CCCcEEEEEEe-CCEEEEEECCCcEEEEECCCCCeeEEEEeccCCCCEEEEEEcCCC------------CEEEEEeCCCe
Q 001455 793 CSGAVTALIYY-KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPG------------ESLLSGSADKT 859 (1074)
Q Consensus 793 H~~~VtsLafS-~~~LaSGs~DGtVrIWDl~t~~~~~i~tl~gH~~~VtsLafSpdg------------~~LaSGS~DGt 859 (1074)
|...-.++.|+ +|++|-|+. ..|.|-|..+.+ .+..+.-|...|+.+.|.|-. -.|+++...|.
T Consensus 14 ~~sN~~A~Dw~~~GLiAygsh-slV~VVDs~s~q--~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~Gr 90 (1062)
T KOG1912|consen 14 SRSNRNAADWSPSGLIAYGSH-SLVSVVDSRSLQ--LIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGR 90 (1062)
T ss_pred CcccccccccCccceEEEecC-ceEEEEehhhhh--hhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCc
Confidence 34446788899 666766655 567788887764 478888999999999998632 13677777888
Q ss_pred EEEEEccCCceEEEEEeccCCCeEEEccCCCeEEEEecCCeEEEEeCCCceeeeecCCCeEEEEE----eCCE--EEEEE
Q 001455 860 IGVWQMVQRKLELIEVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSSRTLKDIYRSKGIKSMSV----VQGK--IYIGC 933 (1074)
Q Consensus 860 IrIWDl~tg~~~~~~~~~h~~~V~s~s~dg~~L~sgS~DgtI~VWDl~~~l~~l~~~~~V~sLa~----sdgk--LlaGs 933 (1074)
|.+||...+..++ ....+..++. .+.| ++.+ +++-.
T Consensus 91 Iil~d~~~~s~~~-~l~~~~~~~q-------------------------------------dl~W~~~rd~Srd~LlaIh 132 (1062)
T KOG1912|consen 91 IILVDFVLASVIN-WLSHSNDSVQ-------------------------------------DLCWVPARDDSRDVLLAIH 132 (1062)
T ss_pred EEEEEehhhhhhh-hhcCCCcchh-------------------------------------heeeeeccCcchheeEEec
Confidence 8888887664322 2222333332 2222 1221 34444
Q ss_pred CCCcEEEEEccCCceeeeccccccccCCCCCeEEEEEcCCceEEEEEecCCCeEEEEECC-------CCCeEEEccCCCC
Q 001455 934 MDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRH-------RKPQISIAPEKGT 1006 (1074)
Q Consensus 934 ~DgsI~IwDl~tg~~~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S~dDgtI~IWDl~-------t~~~i~~l~gH~~ 1006 (1074)
...++.+|+..+|+..-.+ ........++.+.|-...-++.....|.+.+-+.- .++..+....|..
T Consensus 133 ~ss~lvLwntdtG~k~Wk~------~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sd 206 (1062)
T KOG1912|consen 133 GSSTLVLWNTDTGEKFWKY------DYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSD 206 (1062)
T ss_pred CCcEEEEEEccCCceeecc------ccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccc
Confidence 5566777776666542211 11123344455554321111111123434333321 1122222222221
Q ss_pred -------------------------CeEEEEEecCCCEEEEEECCCcEEEEECCCCcEEEEEeCC---CCeEEEEEcCC-
Q 001455 1007 -------------------------TIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAG---SKITSLLTAND- 1057 (1074)
Q Consensus 1007 -------------------------~VtsLafSPDG~~LaSGS~DGtIrIWDl~tg~~l~tL~~h---s~VtsLa~dg~- 1057 (1074)
..-.++|+|.-+-++-......+.|+|++-..++.+.... .++..+-++++
T Consensus 207 l~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~r 286 (1062)
T KOG1912|consen 207 LAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRR 286 (1062)
T ss_pred hhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEeccCCCc
Confidence 1123567887666655566788999999988888777644 34777777754
Q ss_pred -EEEEEECCCcEEEEe
Q 001455 1058 -IVLCGTETGLIKGWI 1072 (1074)
Q Consensus 1058 -~LaSGs~DG~IrIWd 1072 (1074)
.|+++..||.+.+|-
T Consensus 287 d~LfclH~nG~ltirv 302 (1062)
T KOG1912|consen 287 DALFCLHSNGRLTIRV 302 (1062)
T ss_pred ceEEEEecCCeEEEEE
Confidence 999999999999994
No 318
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=97.41 E-value=0.012 Score=80.13 Aligned_cols=244 Identities=13% Similarity=0.066 Sum_probs=168.3
Q ss_pred CCCchhHHHHHHHHHhhhhhccCc-cccchhhhHHHHHHHHHhccCCCCceeccc-hHHHHHHHHHHHhcCcchhhhhhh
Q 001455 244 EKDAKSELLEIIEKAISSLFFSGD-LRKCNKDYVVEVTTLYKMLNSKTGVKYDML-QDVILEQLLTAISASKEETVIRAS 321 (1074)
Q Consensus 244 ~~~~~~~~~~~l~~ai~~l~~s~~-l~~~e~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~i~~~~e~~~~s~~~~v~~~~ 321 (1074)
+-|..++..++.+..|.+|..... .++.+ +++.++-.+- ..++.-+..+. .+.+|.-|+..|. |-+..+.+.+
T Consensus 4 ~~~~~~~~~~~v~~Lve~L~s~~ss~~~~~-~Al~~Lr~La---k~~~enR~~Ia~~aGaIP~LV~lL~-sg~~~vk~nA 78 (2102)
T PLN03200 4 EMDDPDGTLASVAQCIEQLRAKSSSPQEKE-LTTARLLELA---KTREEARKAIGSHSQAMPLLVSLLR-SGTLGAKVNA 78 (2102)
T ss_pred cccCccchHHHHHHHHHHHHcccCCHHHHH-HHHHHHHHHH---hcChHHHHHHHHccCcHHHHHHHHc-CCCHHHHHHH
Confidence 345566777888888888885532 33344 6666666554 44344344443 4777888888875 5678899999
Q ss_pred HHhhHhhhhcchhhhhhhhhcCCCchHHHHHHhhcch-----hhHHHHHhcCCCh------hhhhhccchhHHHHHHhcc
Q 001455 322 VSILTTIILANESVIEDIKKKGLRLSDLATALKRNVP-----EAAILIYLIKPSP------TEIKTLELLPTLVEVICTS 390 (1074)
Q Consensus 322 v~il~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~-----~a~vl~~l~~~~~------~~~~~~~~~~~l~~v~~~~ 390 (1074)
+++|..+-.. +..+..|.. .--+.++..+|+++=+ -|++|-+|..... .-..+..-+|.|+++++.+
T Consensus 79 aaaL~nLS~~-e~nk~~Iv~-~GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~g 156 (2102)
T PLN03200 79 AAVLGVLCKE-EDLRVKVLL-GGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPG 156 (2102)
T ss_pred HHHHHHHhcC-HHHHHHHHH-cCChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCC
Confidence 9998888665 556666664 6788999999999622 2346666654432 2234578899999999987
Q ss_pred ccccCcccccccCchhhHHHHHHHHhhccccccchhh-hhhhcchhhHhHHHHHHhcCChHHHHHHHHHHHhhhhccCcc
Q 001455 391 KLYKGKLESVRLTPPAASLMIIEVLVTAFDYATNNMH-LAAINSPRVLCGLLDVARHQNLEELISLATILVKCIQFDGQC 469 (1074)
Q Consensus 391 ~~~~~~~~~~~~~p~~aa~~~l~~ll~~~d~~~~~~~-~~~~~s~~~l~~l~~~~~~~~~~e~~~~~~il~~C~~~dg~c 469 (1074)
+.. +.. -+..|+..|..|.... .+ ...++..|+++.|++.+..++.+.+..++.+|.+-+..++..
T Consensus 157 sk~-d~~------L~~~Av~AL~nLs~~~------en~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~ 223 (2102)
T PLN03200 157 NKQ-DKV------VEGLLTGALRNLCGST------DGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESS 223 (2102)
T ss_pred chh-hHH------HHHHHHHHHHHHhcCc------cchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHH
Confidence 532 100 1233456676664422 23 234456689999999999999999999999887777666667
Q ss_pred hhHHHhhcCCcchhhhhhcCC-chhHHHHHHHHHHHhcc
Q 001455 470 RKYLSEFTAVAPLACLLQSGE-KRAIMIALEFFHEILRI 507 (1074)
Q Consensus 470 r~~ia~~~~~~~~~~ll~~~~-~~~~~~a~~~l~ell~l 507 (1074)
|..|.+.=-..+++++|.++. ...|..|+..|..|-.-
T Consensus 224 ~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL~nLAs~ 262 (2102)
T PLN03200 224 ISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQ 262 (2102)
T ss_pred HHHHHHCCCHHHHHHHHccCCChHHHHHHHHHHHHHhcC
Confidence 777777777999999998764 47789888888887764
No 319
>PRK04043 tolB translocation protein TolB; Provisional
Probab=97.40 E-value=0.033 Score=66.41 Aligned_cols=188 Identities=9% Similarity=-0.005 Sum_probs=108.1
Q ss_pred cEEEEEEe-C-CE-EEEEEC---CCcEEEEECCCCCeeEEEEeccCCCCEEEEEEcCCCCEEE-EEeCC--CeEEEEEcc
Q 001455 796 AVTALIYY-K-GL-LCSGFS---DGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLL-SGSAD--KTIGVWQMV 866 (1074)
Q Consensus 796 ~VtsLafS-~-~~-LaSGs~---DGtVrIWDl~t~~~~~i~tl~gH~~~VtsLafSpdg~~La-SGS~D--GtIrIWDl~ 866 (1074)
.+..-.|+ + +. ++..+. +..|.++|+.+++...+.. ..+.+....|+|||+.++ +.+.+ ..|.++|+.
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~---~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~ 265 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS---SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTN 265 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec---CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECC
Confidence 67788898 3 33 554333 3568899998886544433 445566788999998865 44333 467777888
Q ss_pred CCceEEEEEeccCCCeEEEccCCCeEEEEecC-C--eEEEEeCCC-ceeeeecCCCeEEEEEe-CCE-EEEEECC-----
Q 001455 867 QRKLELIEVIATKEPIRKLDTYGKTIFASTQG-H--RMKVIDSSR-TLKDIYRSKGIKSMSVV-QGK-IYIGCMD----- 935 (1074)
Q Consensus 867 tg~~~~~~~~~h~~~V~s~s~dg~~L~sgS~D-g--tI~VWDl~~-~l~~l~~~~~V~sLa~s-dgk-LlaGs~D----- 935 (1074)
++.............-..|+|+|+.++..+.. + .|.++|+.. ....+..... ....|+ +|+ ++..+..
T Consensus 266 ~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~-~~~~~SPDG~~Ia~~~~~~~~~~ 344 (419)
T PRK04043 266 TKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGK-NNSSVSTYKNYIVYSSRETNNEF 344 (419)
T ss_pred CCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCC-cCceECCCCCEEEEEEcCCCccc
Confidence 77644322211112223699999988877643 3 677778763 3323322211 123675 776 3333222
Q ss_pred ----CcEEEEEccCCceeeeccccccccCCCCCeEEEEEcCCceEEEEEecCCC--eEEEEECCCC
Q 001455 936 ----SSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGS--NIKEWRRHRK 995 (1074)
Q Consensus 936 ----gsI~IwDl~tg~~~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S~dDg--tI~IWDl~t~ 995 (1074)
..|.+.|+.++....+. .. .......|+|||..++-....++ .+.+.+++..
T Consensus 345 ~~~~~~I~v~d~~~g~~~~LT-------~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~ 402 (419)
T PRK04043 345 GKNTFNLYLISTNSDYIRRLT-------AN-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYN 402 (419)
T ss_pred CCCCcEEEEEECCCCCeEECC-------CC-CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCCC
Confidence 36888888887654331 11 12234678898876654443333 3455555543
No 320
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=97.38 E-value=0.0021 Score=70.70 Aligned_cols=232 Identities=16% Similarity=0.143 Sum_probs=131.3
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCeEEEEEccCCc-eEE---EEEeccCCC------------eEE---EccCC-CeEEEE
Q 001455 836 RKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRK-LEL---IEVIATKEP------------IRK---LDTYG-KTIFAS 895 (1074)
Q Consensus 836 ~~~VtsLafSpdg~~LaSGS~DGtIrIWDl~tg~-~~~---~~~~~h~~~------------V~s---~s~dg-~~L~sg 895 (1074)
.+.|+++.|...|.+|++|...|.|.++.-.... +.. +.+.+|... |.. +.+.+ ..++..
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls 105 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS 105 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence 4679999999999999999999999999754322 111 112333321 222 33333 367888
Q ss_pred ecCCeEEEEeCCCc-eeeeecCCCeEEEEEe-CCEEEEEECCCcEEEEEccCCceeeeccccccc-cCCCCCeEEEEEcC
Q 001455 896 TQGHRMKVIDSSRT-LKDIYRSKGIKSMSVV-QGKIYIGCMDSSIQELAVSNNVEREIKAPFKSW-RLQSKPINSLVVYK 972 (1074)
Q Consensus 896 S~DgtI~VWDl~~~-l~~l~~~~~V~sLa~s-dgkLlaGs~DgsI~IwDl~tg~~~~i~~~~r~~-~~h~~~I~sL~~sp 972 (1074)
+.|.+|++|.+... ++......-..++.++ .|-+.+. ..+++=.+..........|-+.+ ..|...|.++.+..
T Consensus 106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~---~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~Ns 182 (460)
T COG5170 106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTST---KELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNS 182 (460)
T ss_pred cCCceeeeeeeecccchhhhccccccccccccCCCcCCH---HHhhcccccccceEEEeccceeccccceeEeeeeeecC
Confidence 89999999998732 3322221111122222 2211110 00110001000001111122222 46777899999999
Q ss_pred CceEEEEEecCCCeEEEEECCCCC---eEEEccCCCC-----CeEEEEEecC-CCEEEEEECCCcEEEEECCCCcE----
Q 001455 973 DWLYSASSSVEGSNIKEWRRHRKP---QISIAPEKGT-----TIQAMAVVED-FIYLNYNSSASSLQIWLRGTQQK---- 1039 (1074)
Q Consensus 973 d~i~las~S~dDgtI~IWDl~t~~---~i~~l~gH~~-----~VtsLafSPD-G~~LaSGS~DGtIrIWDl~tg~~---- 1039 (1074)
+..++++. +|=.|.+|++.-.. .+..+.+|.. -|++..|+|. ...+.-.+..|.|++-|++....
T Consensus 183 D~et~lSa--DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~ 260 (460)
T COG5170 183 DKETLLSA--DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNS 260 (460)
T ss_pred chheeeec--cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCc
Confidence 98888865 57889999965321 2333445543 5888899984 34455556689999999773221
Q ss_pred --EEEEe--C--C-------CCeEEEEEc--CCEEEEEECCCcEEEEec
Q 001455 1040 --VGRIS--A--G-------SKITSLLTA--NDIVLCGTETGLIKGWIP 1073 (1074)
Q Consensus 1040 --l~tL~--~--h-------s~VtsLa~d--g~~LaSGs~DG~IrIWdi 1073 (1074)
+.... + + ..|..+.|+ |+++++-+. -+|+|||.
T Consensus 261 ~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDv 308 (460)
T COG5170 261 KKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDV 308 (460)
T ss_pred hhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEec
Confidence 22211 1 1 124445564 668777654 57999985
No 321
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.37 E-value=0.062 Score=65.36 Aligned_cols=264 Identities=14% Similarity=0.096 Sum_probs=144.3
Q ss_pred EeCCEEEEEECCCcEEEEECCCCCeeEEEEeccCCC------CEE--EEEEcCCCCEEEEEeCCCeEEEEEccCCceEEE
Q 001455 802 YYKGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRK------AVT--SFSLFEPGESLLSGSADKTIGVWQMVQRKLELI 873 (1074)
Q Consensus 802 fS~~~LaSGs~DGtVrIWDl~t~~~~~i~tl~gH~~------~Vt--sLafSpdg~~LaSGS~DGtIrIWDl~tg~~~~~ 873 (1074)
+.++.++.++.+|.|.-.|..+++. +..+..... .+. .+... ++..++.++.+|.|..+|.++|+....
T Consensus 59 v~~g~vy~~~~~g~l~AlD~~tG~~--~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~ 135 (488)
T cd00216 59 VVDGDMYFTTSHSALFALDAATGKV--LWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWK 135 (488)
T ss_pred EECCEEEEeCCCCcEEEEECCCChh--hceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeee
Confidence 4478888899999999999998864 343332211 110 11111 226788888999999999999987655
Q ss_pred EEeccCC----CeEE-EccCCCeEEEEe---------cCCeEEEEeCCC-ceeeee-c--C-------------------
Q 001455 874 EVIATKE----PIRK-LDTYGKTIFAST---------QGHRMKVIDSSR-TLKDIY-R--S------------------- 916 (1074)
Q Consensus 874 ~~~~h~~----~V~s-~s~dg~~L~sgS---------~DgtI~VWDl~~-~l~~l~-~--~------------------- 916 (1074)
....... .+.+ ....+..++.++ .++.+..+|... ...-.. . .
T Consensus 136 ~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g 215 (488)
T cd00216 136 FGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGG 215 (488)
T ss_pred ecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCC
Confidence 4332210 0111 112234455554 256777777652 111100 0 0
Q ss_pred CCeE-EEEEe--CCEEEEEECCC------------------cEEEEEccCCceeeecccc--ccc--cCCCCCeE-EEE-
Q 001455 917 KGIK-SMSVV--QGKIYIGCMDS------------------SIQELAVSNNVEREIKAPF--KSW--RLQSKPIN-SLV- 969 (1074)
Q Consensus 917 ~~V~-sLa~s--dgkLlaGs~Dg------------------sI~IwDl~tg~~~~i~~~~--r~~--~~h~~~I~-sL~- 969 (1074)
..+. ..++. .+.++.++.++ .+.-+|..+|+..-..... ..| .....++. .+.
T Consensus 216 ~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~ 295 (488)
T cd00216 216 GTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKP 295 (488)
T ss_pred CCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccc
Confidence 0111 22332 56788877665 7999999998875443111 111 11111111 111
Q ss_pred EcCCceEEEEEecCCCeEEEEECCCCCeEEEccCCCCCeEEEEEecCCCEEEEE------------------ECCCcEEE
Q 001455 970 VYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYN------------------SSASSLQI 1031 (1074)
Q Consensus 970 ~spd~i~las~S~dDgtI~IWDl~t~~~i~~l~gH~~~VtsLafSPDG~~LaSG------------------S~DGtIrI 1031 (1074)
........+..+..+|.+...|..+|+.+-..... ...++.+| + .+..+ ..+|.+.-
T Consensus 296 ~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~---~~~~~~~~-~-~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~A 370 (488)
T cd00216 296 KDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV---EQPMAYDP-G-LVYLGAFHIPLGLPPQKKKRCKKPGKGGLAA 370 (488)
T ss_pred cCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee---ccccccCC-c-eEEEccccccccCcccccCCCCCCCceEEEE
Confidence 11111122222235788999999999876543211 01223334 2 22221 23577888
Q ss_pred EECCCCcEEEEEeCC---------CCe--EEEEEcCCEEEEEECCCcEEEEec
Q 001455 1032 WLRGTQQKVGRISAG---------SKI--TSLLTANDIVLCGTETGLIKGWIP 1073 (1074)
Q Consensus 1032 WDl~tg~~l~tL~~h---------s~V--tsLa~dg~~LaSGs~DG~IrIWdi 1073 (1074)
.|..+|+.+-+.... .+. ..+...++.|+.|+.||.|+.+|.
T Consensus 371 lD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~ 423 (488)
T cd00216 371 LDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDA 423 (488)
T ss_pred EeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEEC
Confidence 899999887766544 121 224567889999999999988774
No 322
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.36 E-value=0.01 Score=67.66 Aligned_cols=247 Identities=11% Similarity=0.002 Sum_probs=132.1
Q ss_pred EEEEECCCCCeeEEEEeccCCCCEEEEEEcCCCC-EEEEEeCCCeEEEEEccCCceEEEEEeccCCCeEE--EccC-CCe
Q 001455 816 IKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGE-SLLSGSADKTIGVWQMVQRKLELIEVIATKEPIRK--LDTY-GKT 891 (1074)
Q Consensus 816 VrIWDl~t~~~~~i~tl~gH~~~VtsLafSpdg~-~LaSGS~DGtIrIWDl~tg~~~~~~~~~h~~~V~s--~s~d-g~~ 891 (1074)
|++.+..+-+ ...-+.+|...|..++|+|..+ .+..++.+.+|+|.|+++........ .+ .++++ |+-+ .++
T Consensus 175 v~~l~~~~fk--ssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~-a~-~~~wSC~wDlde~h~ 250 (463)
T KOG1645|consen 175 VQKLESHDFK--SSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYI-AY-NQIWSCCWDLDERHV 250 (463)
T ss_pred eEEeccCCcc--hhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeehee-cc-CCceeeeeccCCcce
Confidence 4555444332 2345567888999999999988 57889999999999999876443322 23 55654 4433 458
Q ss_pred EEEEecCCeEEEEeCCCceeee---ec---CCCeEEEEE-------eCCEEEE-EECCCcEEEEEccCCceeeecccccc
Q 001455 892 IFASTQGHRMKVIDSSRTLKDI---YR---SKGIKSMSV-------VQGKIYI-GCMDSSIQELAVSNNVEREIKAPFKS 957 (1074)
Q Consensus 892 L~sgS~DgtI~VWDl~~~l~~l---~~---~~~V~sLa~-------sdgkLla-Gs~DgsI~IwDl~tg~~~~i~~~~r~ 957 (1074)
+++|..+|.|.|||++.....+ .. ..+|..++. +.|-+++ ...+ ...|.......... ++..
T Consensus 251 IYaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p--~vle 326 (463)
T KOG1645|consen 251 IYAGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLP--CVLE 326 (463)
T ss_pred eEEeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCC--cccc
Confidence 8999999999999998432221 11 233444443 2222333 3322 34455433211100 0000
Q ss_pred ccCCCCCeEEEEEcCCce-EEEEEecCC-----CeEEE-EECCCCCe-EEEccCC-CCC------eEEEEEecCCCEEE-
Q 001455 958 WRLQSKPINSLVVYKDWL-YSASSSVEG-----SNIKE-WRRHRKPQ-ISIAPEK-GTT------IQAMAVVEDFIYLN- 1021 (1074)
Q Consensus 958 ~~~h~~~I~sL~~spd~i-~las~S~dD-----gtI~I-WDl~t~~~-i~~l~gH-~~~------VtsLafSPDG~~La- 1021 (1074)
....+...++..++-.. .+++.-++- ..|-. -|...|.. ...-.++ +.. -..+.-.++..+|+
T Consensus 327 -le~pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~ 405 (463)
T KOG1645|consen 327 -LEPPGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVV 405 (463)
T ss_pred -cCCCcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEE
Confidence 01123344455554322 222222110 00000 11111111 1111111 110 01122234555554
Q ss_pred EEECCCcEEEEECCCCcEEEEEeCCCCeEEEEEc----CCEEEEEECCCcEEEEe
Q 001455 1022 YNSSASSLQIWLRGTQQKVGRISAGSKITSLLTA----NDIVLCGTETGLIKGWI 1072 (1074)
Q Consensus 1022 SGS~DGtIrIWDl~tg~~l~tL~~hs~VtsLa~d----g~~LaSGs~DG~IrIWd 1072 (1074)
.|+..+.+.+||..+++.++++....+|..+.+. +.+|+.-+ |..++|+.
T Consensus 406 ~gd~tn~lil~D~~s~evvQ~l~~~epv~Dicp~~~n~~syLa~LT-d~~v~Iyk 459 (463)
T KOG1645|consen 406 VGDSTNELILQDPHSFEVVQTLALSEPVLDICPNDTNGSSYLALLT-DDRVHIYK 459 (463)
T ss_pred ecCCcceeEEeccchhheeeecccCcceeecceeecCCcchhhhee-cceEEEEe
Confidence 4556689999999999999999988888887764 34776666 45677764
No 323
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.21 E-value=0.023 Score=72.42 Aligned_cols=230 Identities=13% Similarity=0.047 Sum_probs=135.9
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCeEEEEEccCCceEEEEEeccCCCeEEEccCCCeEEEEecCCeEEEEeCCCc---eee
Q 001455 836 RKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSSRT---LKD 912 (1074)
Q Consensus 836 ~~~VtsLafSpdg~~LaSGS~DGtIrIWDl~tg~~~~~~~~~h~~~V~s~s~dg~~L~sgS~DgtI~VWDl~~~---l~~ 912 (1074)
.+.|.++.|..++..++.+..+|.|.+-|..+............-...++++++..++..+.++++.+.+-.-. .+.
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~ 147 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKP 147 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccc
Confidence 36899999999999999999999999999988766554444444344568999999999999888877654310 000
Q ss_pred eecCCCeEEEEEeCCEEEEEECCCcEEEEEccCCceeeeccccc-cccC---CCCCeEEEEEcCCceEEEEEe---cCC-
Q 001455 913 IYRSKGIKSMSVVQGKIYIGCMDSSIQELAVSNNVEREIKAPFK-SWRL---QSKPINSLVVYKDWLYSASSS---VEG- 984 (1074)
Q Consensus 913 l~~~~~V~sLa~sdgkLlaGs~DgsI~IwDl~tg~~~~i~~~~r-~~~~---h~~~I~sL~~spd~i~las~S---~dD- 984 (1074)
+... ....++.+.+++...=.-+.-..|+......... ...+ ....-+++.|-.||.+++... ..|
T Consensus 148 L~~d------~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~ 221 (1265)
T KOG1920|consen 148 LDAD------DERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGT 221 (1265)
T ss_pred cccc------cccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCc
Confidence 1000 0012334444433322222222222111000000 0000 122335688888997776532 133
Q ss_pred CeEEEEECCCCCeEEEccCCCCCeEEEEEecCCCEEEEEE---CCCcEEEEECCC---CcEEEEEeCC-CCeEEEEEc--
Q 001455 985 SNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNS---SASSLQIWLRGT---QQKVGRISAG-SKITSLLTA-- 1055 (1074)
Q Consensus 985 gtI~IWDl~t~~~i~~l~gH~~~VtsLafSPDG~~LaSGS---~DGtIrIWDl~t---g~~l~tL~~h-s~VtsLa~d-- 1055 (1074)
+.|++||.+ |.+-..-....+.=.+++|-|.|..+++-. .|+.|.+|..+. |+..-.+... .+|..++|+
T Consensus 222 RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~ 300 (1265)
T KOG1920|consen 222 RKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSN 300 (1265)
T ss_pred eeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCC
Confidence 799999987 443333333333446789999999998844 466899997543 2222223323 238889997
Q ss_pred CCEEEE---EECCCcEEEEe
Q 001455 1056 NDIVLC---GTETGLIKGWI 1072 (1074)
Q Consensus 1056 g~~LaS---Gs~DG~IrIWd 1072 (1074)
++.|+. ......|++|-
T Consensus 301 sdiLAv~~~~~e~~~v~lwt 320 (1265)
T KOG1920|consen 301 SDILAVVTSNLENSLVQLWT 320 (1265)
T ss_pred CCceeeeecccccceEEEEE
Confidence 556666 44455599995
No 324
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.18 E-value=0.014 Score=71.42 Aligned_cols=106 Identities=15% Similarity=0.235 Sum_probs=73.2
Q ss_pred ccccccccccccccccccCCCcccceeeEEEEeecCC-----CCCcEEEEEEeCC--EEEEEECCCcEEEEECCCCCeeE
Q 001455 756 SNVTWMAEELHKAADYYLPNISRISCVHTQILEASHK-----CSGAVTALIYYKG--LLCSGFSDGSIKMWDIKKQSAML 828 (1074)
Q Consensus 756 k~~~w~a~~~~k~~~~~~p~~~~~~~~~tl~le~~~g-----H~~~VtsLafS~~--~LaSGs~DGtVrIWDl~t~~~~~ 828 (1074)
..++|++.+.+..-.++.|. +...+.++. +.+.. -.-.+++++|++. .|+.|-.-|.+.+|...+.+.
T Consensus 19 ti~SWHPsePlfAVA~fS~e--r~GSVtIfa-dtGEPqr~Vt~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~-- 93 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPE--RGGSVTIFA-DTGEPQRDVTYPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTET-- 93 (1416)
T ss_pred cccccCCCCceeEEEEecCC--CCceEEEEe-cCCCCCcccccceehhhhccChHHHHHhhccccceeEEEecCCcee--
Confidence 34678887775544433332 122222222 11111 1224677999944 588999999999999987653
Q ss_pred EEEeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcc
Q 001455 829 VWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMV 866 (1074)
Q Consensus 829 i~tl~gH~~~VtsLafSpdg~~LaSGS~DGtIrIWDl~ 866 (1074)
-.....|+.+|..+.||++|..++|+..-|.|.+|...
T Consensus 94 htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 94 HTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred eeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 22335799999999999999999999999999999775
No 325
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=97.16 E-value=0.053 Score=59.93 Aligned_cols=217 Identities=13% Similarity=0.057 Sum_probs=113.7
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEEccCCc--eEEE-EEeccCCC---eEEEccCCCeEEEEecCCeEEEEeCCCc-eeeee
Q 001455 842 FSLFEPGESLLSGSADKTIGVWQMVQRK--LELI-EVIATKEP---IRKLDTYGKTIFASTQGHRMKVIDSSRT-LKDIY 914 (1074)
Q Consensus 842 LafSpdg~~LaSGS~DGtIrIWDl~tg~--~~~~-~~~~h~~~---V~s~s~dg~~L~sgS~DgtI~VWDl~~~-l~~l~ 914 (1074)
++.+++|+.||..- |..|.|=..+..- .+.. .+.....+ -.++++++..++.+...|+|++||+.+. ...+.
T Consensus 3 ~~~~~~Gk~lAi~q-d~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~ 81 (282)
T PF15492_consen 3 LALSSDGKLLAILQ-DQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVIP 81 (282)
T ss_pred eeecCCCcEEEEEe-ccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccceeEEcC
Confidence 45667888776544 6666665444321 1111 11222222 2358999999999999999999998742 22222
Q ss_pred c--------CCCeEEEEEe--------CCEEEEEECCCcEEEEEccCCceeeeccccccc---cCCCCCeEEEEEcCCce
Q 001455 915 R--------SKGIKSMSVV--------QGKIYIGCMDSSIQELAVSNNVEREIKAPFKSW---RLQSKPINSLVVYKDWL 975 (1074)
Q Consensus 915 ~--------~~~V~sLa~s--------dgkLlaGs~DgsI~IwDl~tg~~~~i~~~~r~~---~~h~~~I~sL~~spd~i 975 (1074)
. ...|..+.|. .-.+++-..+|.++-|-+..+....... ...+ ......|.++.++|...
T Consensus 82 p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e-~hsfsf~~~yp~Gi~~~vy~p~h~ 160 (282)
T PF15492_consen 82 PAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQE-NHSFSFSSHYPHGINSAVYHPKHR 160 (282)
T ss_pred cccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCccee-eEEEEecccCCCceeEEEEcCCCC
Confidence 1 2346677773 1237778888888888875433221111 1111 12366889999998866
Q ss_pred EEEEEecCCCeEEEEECCCCCeEEEccCCCCCeEEEEE---ecCCCEEEEEECCCc------EEEEECCCCcEEEEEeC-
Q 001455 976 YSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAV---VEDFIYLNYNSSASS------LQIWLRGTQQKVGRISA- 1045 (1074)
Q Consensus 976 ~las~S~dDgtI~IWDl~t~~~i~~l~gH~~~VtsLaf---SPDG~~LaSGS~DGt------IrIWDl~tg~~l~tL~~- 1045 (1074)
.++.++.+...-..+. .....+++-.. +|..+. ++...|+. -.+|.+-+.... ...+
T Consensus 161 LLlVgG~~~~~~~~s~-----------a~~~GLtaWRiL~~~Pyyk~-v~~~~~~~~~~~~~~~~~~~~~~~~f-s~~~~ 227 (282)
T PF15492_consen 161 LLLVGGCEQNQDGMSK-----------ASSCGLTAWRILSDSPYYKQ-VTSSEDDITASSKRRGLLRIPSFKFF-SRQGQ 227 (282)
T ss_pred EEEEeccCCCCCcccc-----------ccccCceEEEEcCCCCcEEE-ccccCccccccccccceeeccceeee-ecccc
Confidence 5555543332100000 01111111111 111111 11222221 123333322111 1112
Q ss_pred -CCCeEE--EEEcCCEEEEEECCCcEEEEec
Q 001455 1046 -GSKITS--LLTANDIVLCGTETGLIKGWIP 1073 (1074)
Q Consensus 1046 -hs~Vts--La~dg~~LaSGs~DG~IrIWdi 1073 (1074)
...|.. ++|||..|++...+|.|.+|++
T Consensus 228 ~~d~i~kmSlSPdg~~La~ih~sG~lsLW~i 258 (282)
T PF15492_consen 228 EQDGIFKMSLSPDGSLLACIHFSGSLSLWEI 258 (282)
T ss_pred CCCceEEEEECCCCCEEEEEEcCCeEEEEec
Confidence 133544 6688999999999999999985
No 326
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.13 E-value=0.16 Score=55.60 Aligned_cols=138 Identities=12% Similarity=0.156 Sum_probs=89.5
Q ss_pred CEEEEEECCCcEEEEECCCCCeeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEccCCceEEEEEeccCCCeEE
Q 001455 805 GLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATKEPIRK 884 (1074)
Q Consensus 805 ~~LaSGs~DGtVrIWDl~t~~~~~i~tl~gH~~~VtsLafSpdg~~LaSGS~DGtIrIWDl~tg~~~~~~~~~h~~~V~s 884 (1074)
.+++.|+..|.+.--|.++++.. .+- --...|.+-+.- -|++++.|...|.+++.+.++|...........-.+..
T Consensus 24 T~v~igSHs~~~~avd~~sG~~~--We~-ilg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a 99 (354)
T KOG4649|consen 24 TLVVIGSHSGIVIAVDPQSGNLI--WEA-ILGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRA 99 (354)
T ss_pred eEEEEecCCceEEEecCCCCcEE--eeh-hhCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccce
Confidence 46777777888888888777542 221 112334333322 47779999999999999999997655554444444443
Q ss_pred -EccCCCeEEEEecCCeEEEEeCCC--ceeeeecCCCeE---EEEEeCCEEEEEECCCcEEEEEccCC
Q 001455 885 -LDTYGKTIFASTQGHRMKVIDSSR--TLKDIYRSKGIK---SMSVVQGKIYIGCMDSSIQELAVSNN 946 (1074)
Q Consensus 885 -~s~dg~~L~sgS~DgtI~VWDl~~--~l~~l~~~~~V~---sLa~sdgkLlaGs~DgsI~IwDl~tg 946 (1074)
.++++..++.|+.|++.+..|... +.....-++++. +++--++.++++...|.+.--....+
T Consensus 100 ~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~~~ 167 (354)
T KOG4649|consen 100 QCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKNPY 167 (354)
T ss_pred EEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceEEEEccCCC
Confidence 689999999999999999999873 333333233322 22222677887777777665555443
No 327
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.08 E-value=0.0024 Score=73.36 Aligned_cols=205 Identities=13% Similarity=0.055 Sum_probs=132.9
Q ss_pred cCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEccC--CceEEEEEeccCCCeEE--EccCCCeEEEEec-CCeEEEEeCCC
Q 001455 834 EHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQ--RKLELIEVIATKEPIRK--LDTYGKTIFASTQ-GHRMKVIDSSR 908 (1074)
Q Consensus 834 gH~~~VtsLafSpdg~~LaSGS~DGtIrIWDl~t--g~~~~~~~~~h~~~V~s--~s~dg~~L~sgS~-DgtI~VWDl~~ 908 (1074)
-|.+.|+.+.- .-.+++.+++.||.++.|.-.. |.........|-..+.+ .+.++..+.+++. |..++++|+..
T Consensus 7 mhrd~i~hv~~-tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn 85 (558)
T KOG0882|consen 7 MHRDVITHVFP-TKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVEN 85 (558)
T ss_pred cccceeeeEee-ehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeec
Confidence 36777776654 3456799999999999997543 22222223344444443 4677888888777 99999999862
Q ss_pred -----ceeeeecCCCeEEEEEeCC---EEEE-EECCCcEEEEEccCCceeeeccccccccCCCCCeEEEEEcCCceEEEE
Q 001455 909 -----TLKDIYRSKGIKSMSVVQG---KIYI-GCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSAS 979 (1074)
Q Consensus 909 -----~l~~l~~~~~V~sLa~sdg---kLla-Gs~DgsI~IwDl~tg~~~~i~~~~r~~~~h~~~I~sL~~spd~i~las 979 (1074)
..+.....+.+..+.-++. .+.+ .-.++.+.++|-..+..... ..-..|..+|..+.+.+-+....+
T Consensus 86 ~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~----~fkklH~sPV~~i~y~qa~Ds~vS 161 (558)
T KOG0882|consen 86 FDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDG----YFKKLHFSPVKKIRYNQAGDSAVS 161 (558)
T ss_pred cchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccc----eecccccCceEEEEeeccccceee
Confidence 1222222232322222221 2222 34678899998876543211 122457899999999998877765
Q ss_pred EecCCCeEEEEECCC------CCe---------EEEccCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCcEEEEEe
Q 001455 980 SSVEGSNIKEWRRHR------KPQ---------ISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRIS 1044 (1074)
Q Consensus 980 ~S~dDgtI~IWDl~t------~~~---------i~~l~gH~~~VtsLafSPDG~~LaSGS~DGtIrIWDl~tg~~l~tL~ 1044 (1074)
.. ..|.|..|.... ... +..+........++.|+|+|..+.+-+.|..|++++.++|+.++.+.
T Consensus 162 iD-~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiD 240 (558)
T KOG0882|consen 162 ID-ISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEID 240 (558)
T ss_pred cc-ccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhh
Confidence 53 568999999763 111 11112233467899999999999999999999999999988765543
No 328
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.06 E-value=0.092 Score=62.25 Aligned_cols=229 Identities=13% Similarity=0.047 Sum_probs=135.1
Q ss_pred EEEEECCCCCeeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEccCCceEEEEEeccC-CCeEEEccCCCeEEE
Q 001455 816 IKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATK-EPIRKLDTYGKTIFA 894 (1074)
Q Consensus 816 VrIWDl~t~~~~~i~tl~gH~~~VtsLafSpdg~~LaSGS~DGtIrIWDl~tg~~~~~~~~~h~-~~V~s~s~dg~~L~s 894 (1074)
...|+........+. ....-.-+-+.|||-|.+|+|--.-| |.+|--.+-... ....|. .....|+|..++|++
T Consensus 192 svfwN~~~n~p~~ie--~RenWTetyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~--~RF~Hp~Vq~idfSP~EkYLVT 266 (698)
T KOG2314|consen 192 SVFWNSKFNEPSLIE--ERENWTETYVRWSPKGTYLVTFHKQG-IALWGGESFDRI--QRFYHPGVQFIDFSPNEKYLVT 266 (698)
T ss_pred EEEccccCCchhhhh--hhhcceeeeEEecCCceEEEEEeccc-eeeecCccHHHH--HhccCCCceeeecCCccceEEE
Confidence 556776654221111 11122346789999999999988766 789965442211 112233 344578999999988
Q ss_pred Eec-----------CCeEEEEeCC-Ccee-eee---cCCCeE-EEEEe-CCEEEEEECCCcEEEEEccCCceeeeccccc
Q 001455 895 STQ-----------GHRMKVIDSS-RTLK-DIY---RSKGIK-SMSVV-QGKIYIGCMDSSIQELAVSNNVEREIKAPFK 956 (1074)
Q Consensus 895 gS~-----------DgtI~VWDl~-~~l~-~l~---~~~~V~-sLa~s-dgkLlaGs~DgsI~IwDl~tg~~~~i~~~~r 956 (1074)
-+. ...+.|||+. +..+ .+. ....+. -..|+ |+++++.-...+|.||+...-.....+
T Consensus 267 ~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~sisIyEtpsf~lld~K---- 342 (698)
T KOG2314|consen 267 YSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSISIYETPSFMLLDKK---- 342 (698)
T ss_pred ecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccceEEEEecCceeeeccc----
Confidence 642 2589999987 2222 221 122222 34567 888888666688999988763222111
Q ss_pred cccCCCCCeEEEEEcCCceEEEEEecCCC----eEEEEECCCCCeEEEccCCCCCeEEEEEecCCCEEEEEE--------
Q 001455 957 SWRLQSKPINSLVVYKDWLYSASSSVEGS----NIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNS-------- 1024 (1074)
Q Consensus 957 ~~~~h~~~I~sL~~spd~i~las~S~dDg----tI~IWDl~t~~~i~~l~gH~~~VtsLafSPDG~~LaSGS-------- 1024 (1074)
...-..|..+.++|.+..++-+.++.. .+.+-.+.+++.+++..-|.-.=..+-|-.+|.||+.--
T Consensus 343 --slki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~ 420 (698)
T KOG2314|consen 343 --SLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKV 420 (698)
T ss_pred --ccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccc
Confidence 112356777888888888877776543 556666666666665544433333466778888887522
Q ss_pred --CCCcEEEEECCCCc-EEEEEeCCCCeEEEEEc
Q 001455 1025 --SASSLQIWLRGTQQ-KVGRISAGSKITSLLTA 1055 (1074)
Q Consensus 1025 --~DGtIrIWDl~tg~-~l~tL~~hs~VtsLa~d 1055 (1074)
.-..+.|+.++... ++..+.....|..++|.
T Consensus 421 ~g~f~n~eIfrireKdIpve~velke~vi~FaWE 454 (698)
T KOG2314|consen 421 KGQFSNLEIFRIREKDIPVEVVELKESVIAFAWE 454 (698)
T ss_pred cceEeeEEEEEeeccCCCceeeecchheeeeeec
Confidence 11234555544332 35555555568888876
No 329
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.05 E-value=0.1 Score=62.67 Aligned_cols=72 Identities=11% Similarity=-0.052 Sum_probs=58.4
Q ss_pred CCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEccCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCC
Q 001455 962 SKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGT 1036 (1074)
Q Consensus 962 ~~~I~sL~~spd~i~las~S~dDgtI~IWDl~t~~~i~~l~gH~~~VtsLafSPDG~~LaSGS~DGtIrIWDl~t 1036 (1074)
...+.+.+.+|+...++.+. .||+|.+||...+... .....-.++.++|+|+|.++++|+..|.+.+||+.-
T Consensus 259 ~s~v~~ca~sp~E~kLvlGC-~DgSiiLyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 259 PSQVICCARSPSEDKLVLGC-EDGSIILYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMAL 330 (545)
T ss_pred CCcceEEecCcccceEEEEe-cCCeEEEEEcCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeec
Confidence 67888999999888777665 7999999998776432 223445678899999999999999999999999643
No 330
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.05 E-value=0.032 Score=68.97 Aligned_cols=190 Identities=9% Similarity=0.110 Sum_probs=117.4
Q ss_pred CeEEEccCCCeEEEEecCCeEEEEeCCCce-eeeec-CCC-eEEEEEeCC--EEEEEECC-C----cEEEEEccCCceee
Q 001455 881 PIRKLDTYGKTIFASTQGHRMKVIDSSRTL-KDIYR-SKG-IKSMSVVQG--KIYIGCMD-S----SIQELAVSNNVERE 950 (1074)
Q Consensus 881 ~V~s~s~dg~~L~sgS~DgtI~VWDl~~~l-~~l~~-~~~-V~sLa~sdg--kLlaGs~D-g----sI~IwDl~tg~~~~ 950 (1074)
.+.++++.+..++.|+.+|.|.+++-.-.. ..+.. ... |..+...++ -+++.+.| + .+++||+..-....
T Consensus 27 ~isc~~s~~~~vvigt~~G~V~~Ln~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~ 106 (933)
T KOG2114|consen 27 AISCCSSSTGSVVIGTADGRVVILNSSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNN 106 (933)
T ss_pred ceeEEcCCCceEEEeeccccEEEecccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCC
Confidence 788899999999999999999888876333 33332 223 333333444 35554433 2 58999997532111
Q ss_pred ---ecccccc----ccCCCCCeEEEEEcCCceEEEEEecCCCeEEEEECC----CCCeEEEccCCCCCeEEEEEecCCCE
Q 001455 951 ---IKAPFKS----WRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRH----RKPQISIAPEKGTTIQAMAVVEDFIY 1019 (1074)
Q Consensus 951 ---i~~~~r~----~~~h~~~I~sL~~spd~i~las~S~dDgtI~IWDl~----t~~~i~~l~gH~~~VtsLafSPDG~~ 1019 (1074)
.....+. ......|+.++++|.+-..++.+- .+|.|..+.-+ .+...........+|+.+++..++..
T Consensus 107 sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf-~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s 185 (933)
T KOG2114|consen 107 SPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGF-TNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKS 185 (933)
T ss_pred CcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEe-cCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCce
Confidence 0000011 122467889999999866666544 78888888622 22222333334568999999998887
Q ss_pred EEEEECCCcEEEEECCCCcE-EEEEeCCCC-eEEEEEc-CCE-EEEEECCCcEEEEe
Q 001455 1020 LNYNSSASSLQIWLRGTQQK-VGRISAGSK-ITSLLTA-NDI-VLCGTETGLIKGWI 1072 (1074)
Q Consensus 1020 LaSGS~DGtIrIWDl~tg~~-l~tL~~hs~-VtsLa~d-g~~-LaSGs~DG~IrIWd 1072 (1074)
++-......|.+|.+....+ ...+..||. ++|.+++ +.. +++++.. .+.+|+
T Consensus 186 ~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~e-~l~fY~ 241 (933)
T KOG2114|consen 186 VLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGSE-FLYFYD 241 (933)
T ss_pred eEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecCc-eEEEEc
Confidence 44444467899999885443 555666654 8888876 333 5555433 466665
No 331
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.01 E-value=0.075 Score=63.67 Aligned_cols=222 Identities=10% Similarity=0.047 Sum_probs=112.1
Q ss_pred EeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEccCCceEEEEEeccCCCeEEEccCCCeEEEEecCCeEEEE-eCCC-
Q 001455 831 DVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATKEPIRKLDTYGKTIFASTQGHRMKVI-DSSR- 908 (1074)
Q Consensus 831 tl~gH~~~VtsLafSpdg~~LaSGS~DGtIrIWDl~tg~~~~~~~~~h~~~V~s~s~dg~~L~sgS~DgtI~VW-Dl~~- 908 (1074)
.+....-....+.++|+|+.++.++ ||...|+.....+... . ..+.-..|.. .+.+++...+++|.++ +...
T Consensus 27 ~lg~~~~~p~~ls~npngr~v~V~g-~geY~iyt~~~~r~k~--~--G~g~~~vw~~-~n~yAv~~~~~~I~I~kn~~~~ 100 (443)
T PF04053_consen 27 ELGSCEIYPQSLSHNPNGRFVLVCG-DGEYEIYTALAWRNKA--F--GSGLSFVWSS-RNRYAVLESSSTIKIYKNFKNE 100 (443)
T ss_dssp EEEE-SS--SEEEE-TTSSEEEEEE-TTEEEEEETTTTEEEE--E--EE-SEEEE-T-SSEEEEE-TTS-EEEEETTEE-
T ss_pred cCCCCCcCCeeEEECCCCCEEEEEc-CCEEEEEEccCCcccc--c--CceeEEEEec-CccEEEEECCCeEEEEEcCccc
Confidence 3334455678999999999988855 7788888744332211 1 1111123555 5567777778889996 3431
Q ss_pred ceeeeecCCCeEEEEEeCCEEEEEECCCcEEEEEccCCceeeeccccccccCCCCCeEEEEEcCCceEEEEEecCCCeEE
Q 001455 909 TLKDIYRSKGIKSMSVVQGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIK 988 (1074)
Q Consensus 909 ~l~~l~~~~~V~sLa~sdgkLlaGs~DgsI~IwDl~tg~~~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S~dDgtI~ 988 (1074)
..+.+.....+..+-. |.++....++.|.+||+.+++..... .-.+|..+.|++++.+++-.+ +.++.
T Consensus 101 ~~k~i~~~~~~~~If~--G~LL~~~~~~~i~~yDw~~~~~i~~i--------~v~~vk~V~Ws~~g~~val~t--~~~i~ 168 (443)
T PF04053_consen 101 VVKSIKLPFSVEKIFG--GNLLGVKSSDFICFYDWETGKLIRRI--------DVSAVKYVIWSDDGELVALVT--KDSIY 168 (443)
T ss_dssp TT-----SS-EEEEE---SSSEEEEETTEEEEE-TTT--EEEEE--------SS-E-EEEEE-TTSSEEEEE---S-SEE
T ss_pred cceEEcCCcccceEEc--CcEEEEECCCCEEEEEhhHcceeeEE--------ecCCCcEEEEECCCCEEEEEe--CCeEE
Confidence 2123333333433333 88777666779999999997654321 123488999999988887776 44688
Q ss_pred EEECCCC-----------CeEEEccCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCeEEEEEcCC
Q 001455 989 EWRRHRK-----------PQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAGSKITSLLTAND 1057 (1074)
Q Consensus 989 IWDl~t~-----------~~i~~l~gH~~~VtsLafSPDG~~LaSGS~DGtIrIWDl~tg~~l~tL~~hs~VtsLa~dg~ 1057 (1074)
+++.+.. ........-...|.+.+|..| -++.|.. . .++.+--.....+.++...--+.......+
T Consensus 169 il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d-~fiYtT~-~-~lkYl~~Ge~~~i~~ld~~~yllgy~~~~~ 245 (443)
T PF04053_consen 169 ILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED-CFIYTTS-N-HLKYLVNGETGIIAHLDKPLYLLGYLPKEN 245 (443)
T ss_dssp EEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT-EEEEE-T-T-EEEEEETTEEEEEEE-SS--EEEEEETTTT
T ss_pred EEEecchhcccccccCchhceEEEEEecceeEEEEEEcC-EEEEEcC-C-eEEEEEcCCcceEEEcCCceEEEEEEccCC
Confidence 8775433 022223222456888888876 4444433 2 666533222223444443222444444447
Q ss_pred EEEEEECCCcEEEEec
Q 001455 1058 IVLCGTETGLIKGWIP 1073 (1074)
Q Consensus 1058 ~LaSGs~DG~IrIWdi 1073 (1074)
.++....|+.|..+.+
T Consensus 246 ~ly~~Dr~~~v~~~~l 261 (443)
T PF04053_consen 246 RLYLIDRDGNVISYEL 261 (443)
T ss_dssp EEEEE-TT--EEEEE-
T ss_pred EEEEEECCCCEEEEEE
Confidence 8888889988887643
No 332
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=96.98 E-value=0.31 Score=57.74 Aligned_cols=246 Identities=13% Similarity=0.103 Sum_probs=113.1
Q ss_pred cEEEEEEe--CCEEEEEECCCcEEEEECCCCCe-----------------------------------------eEEEEe
Q 001455 796 AVTALIYY--KGLLCSGFSDGSIKMWDIKKQSA-----------------------------------------MLVWDV 832 (1074)
Q Consensus 796 ~VtsLafS--~~~LaSGs~DGtVrIWDl~t~~~-----------------------------------------~~i~tl 832 (1074)
.|+.+.|. ..-++.|...|.|.||.....+. .+..-+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 57888888 45799999999999997643211 011122
Q ss_pred ccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEccCCceEEEEEecc-------CCCeEEE-------ccCC---CeEEEE
Q 001455 833 KEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIAT-------KEPIRKL-------DTYG---KTIFAS 895 (1074)
Q Consensus 833 ~gH~~~VtsLafSpdg~~LaSGS~DGtIrIWDl~tg~~~~~~~~~h-------~~~V~s~-------s~dg---~~L~sg 895 (1074)
....++|++++.| |--+++.|..+|.+.|.|++....+....... ...++++ ..++ -.+++|
T Consensus 83 ~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG 161 (395)
T PF08596_consen 83 DAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG 161 (395)
T ss_dssp ---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred eccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence 2345778888875 44477788888888888887666554422222 1122221 1122 155666
Q ss_pred ecCCeEEEEeCCCceeeeecCCCeEEEEEe---CCEEEEEECCCcEEEEEccCCceeeecccccccc--CCCCCeEEEEE
Q 001455 896 TQGHRMKVIDSSRTLKDIYRSKGIKSMSVV---QGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWR--LQSKPINSLVV 970 (1074)
Q Consensus 896 S~DgtI~VWDl~~~l~~l~~~~~V~sLa~s---dgkLlaGs~DgsI~IwDl~tg~~~~i~~~~r~~~--~h~~~I~sL~~ 970 (1074)
+..|.+.+|.+-. .-.+...+..+... ++.++ .|..+|..+|....... ..+. ..+..+
T Consensus 162 Tn~G~v~~fkIlp---~~~g~f~v~~~~~~~~~~~~i~------~I~~i~~~~G~~a~At~--~~~~~l~~g~~i----- 225 (395)
T PF08596_consen 162 TNSGNVLTFKILP---SSNGRFSVQFAGATTNHDSPIL------SIIPINADTGESALATI--SAMQGLSKGISI----- 225 (395)
T ss_dssp ETTSEEEEEEEEE----GGG-EEEEEEEEE--SS----------EEEEEETTT--B-B-BH--HHHHGGGGT--------
T ss_pred eCCCCEEEEEEec---CCCCceEEEEeeccccCCCceE------EEEEEECCCCCcccCch--hHhhccccCCCc-----
Confidence 6666666665510 00000001111110 11111 12223333332211100 0000 001111
Q ss_pred cCCceEEEEEecCCCeEEEEECCCCCeEEEccCCCCCeEEEEEe-----cCCCEEEEEECCCcEEEEECCCCcEEEEEeC
Q 001455 971 YKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVV-----EDFIYLNYNSSASSLQIWLRGTQQKVGRISA 1045 (1074)
Q Consensus 971 spd~i~las~S~dDgtI~IWDl~t~~~i~~l~gH~~~VtsLafS-----PDG~~LaSGS~DGtIrIWDl~tg~~l~tL~~ 1045 (1074)
.+ +++..+ ...++++...+.+..+......-....+.+- ..+..|++-..+|.|+++.+-..+.+..++.
T Consensus 226 --~g-~vVvvS--e~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l 300 (395)
T PF08596_consen 226 --PG-YVVVVS--ESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSL 300 (395)
T ss_dssp ---E-EEEEE---SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-
T ss_pred --Cc-EEEEEc--ccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccC
Confidence 12 333343 4679999987766554443332334445552 3577788888999999999999999988886
Q ss_pred CCC-------eEEEEEcCCEEEEEE
Q 001455 1046 GSK-------ITSLLTANDIVLCGT 1063 (1074)
Q Consensus 1046 hs~-------VtsLa~dg~~LaSGs 1063 (1074)
... =.++..+|+.++-.+
T Consensus 301 ~~~~d~~~~~~ssis~~Gdi~~~~g 325 (395)
T PF08596_consen 301 PPPLDSRRLSSSSISRNGDIFYWTG 325 (395)
T ss_dssp SS---HHHHTT-EE-TTS-EEEE-S
T ss_pred CCccccccccccEECCCCCEEEEeC
Confidence 522 123455577555443
No 333
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=96.96 E-value=0.00067 Score=82.61 Aligned_cols=239 Identities=13% Similarity=0.068 Sum_probs=142.8
Q ss_pred CCCCcEEEEEEe--CCEEEEEECCCcEEEEECCCCCeeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCC--eEEEEEccC
Q 001455 792 KCSGAVTALIYY--KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADK--TIGVWQMVQ 867 (1074)
Q Consensus 792 gH~~~VtsLafS--~~~LaSGs~DGtVrIWDl~t~~~~~i~tl~gH~~~VtsLafSpdg~~LaSGS~DG--tIrIWDl~t 867 (1074)
.|+...+|++|+ .+.|+.|+..|.|+++++.+|.. .....+|.++|+-+.-+.+|..+++.+.-. -..+|+...
T Consensus 1099 d~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~--e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s 1176 (1516)
T KOG1832|consen 1099 DETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSM--EESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASS 1176 (1516)
T ss_pred ccccceeeEEeecCCceEEeeeccceEEEEEccCccc--cccccccccccccccccCCcceeeeeccccCchHHHhcccc
Confidence 788999999999 55899999999999999999865 456789999999999999999866554332 467899865
Q ss_pred -CceEEEEEeccCCCeEEEccCCCeEEEEecCCeEEEEeCCCc--eeeeec-----CCCeEEEEEe-CCEEEEEECCCcE
Q 001455 868 -RKLELIEVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSSRT--LKDIYR-----SKGIKSMSVV-QGKIYIGCMDSSI 938 (1074)
Q Consensus 868 -g~~~~~~~~~h~~~V~s~s~dg~~L~sgS~DgtI~VWDl~~~--l~~l~~-----~~~V~sLa~s-dgkLlaGs~DgsI 938 (1074)
+.... .. .......|+.+...-+.|+......+||+..+ ..++.. ...-.+..|+ ...++. +||
T Consensus 1177 ~~~~~H--sf-~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl--ndG-- 1249 (1516)
T KOG1832|consen 1177 TGGPRH--SF-DEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL--NDG-- 1249 (1516)
T ss_pred ccCccc--cc-cccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe--eCc--
Confidence 21111 11 11122335555555566666678899998733 222111 1112455564 444332 344
Q ss_pred EEEEccCCceeeeccccccccCCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEccCCCCCeEEEEEecCCC
Q 001455 939 QELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFI 1018 (1074)
Q Consensus 939 ~IwDl~tg~~~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S~dDgtI~IWDl~t~~~i~~l~gH~~~VtsLafSPDG~ 1018 (1074)
.+||++..+.+. .|.... .--.=.|||.|.-++..+ .|||+++.+.++....- .-..+.|...|.
T Consensus 1250 vLWDvR~~~aIh------~FD~ft-~~~~G~FHP~g~eVIINS------EIwD~RTF~lLh~VP~L--dqc~VtFNstG~ 1314 (1516)
T KOG1832|consen 1250 VLWDVRIPEAIH------RFDQFT-DYGGGGFHPSGNEVIINS------EIWDMRTFKLLHSVPSL--DQCAVTFNSTGD 1314 (1516)
T ss_pred eeeeeccHHHHh------hhhhhe-ecccccccCCCceEEeec------hhhhhHHHHHHhcCccc--cceEEEeccCcc
Confidence 369998743322 222111 111225788887776543 58999887766544222 224566777776
Q ss_pred EEEEEE--CC---------------CcEEEEECCCCcEEEEEeCCCCeEEEEE
Q 001455 1019 YLNYNS--SA---------------SSLQIWLRGTQQKVGRISAGSKITSLLT 1054 (1074)
Q Consensus 1019 ~LaSGS--~D---------------GtIrIWDl~tg~~l~tL~~hs~VtsLa~ 1054 (1074)
.+...- .| ...+-++..+...+.++.+...|..++-
T Consensus 1315 VmYa~~~~~d~~sdvh~~r~k~p~fSSFRTf~a~dYs~iaTi~v~R~~~Dlct 1367 (1516)
T KOG1832|consen 1315 VMYAMLNIEDVMSDVHTRRVKHPLFSSFRTFDAIDYSDIATIPVDRCLLDLCT 1367 (1516)
T ss_pred chhhhhhhhhhhhhhcccccccchhhhhccccccccccceeeecccchhhhhc
Confidence 554321 00 1234445555555666665544544443
No 334
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=96.95 E-value=0.33 Score=55.69 Aligned_cols=251 Identities=12% Similarity=0.087 Sum_probs=137.5
Q ss_pred CcEEEEECCCCCeeEEEEeccCCCCEEEEEEcCCCCEEEEEe----------CCCeEEEEEccCCceEEEEEeccC--C-
Q 001455 814 GSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGS----------ADKTIGVWQMVQRKLELIEVIATK--E- 880 (1074)
Q Consensus 814 GtVrIWDl~t~~~~~i~tl~gH~~~VtsLafSpdg~~LaSGS----------~DGtIrIWDl~tg~~~~~~~~~h~--~- 880 (1074)
+.|.|+|.++++. +..+.. +-.-.+..+|+++.+++++ ..-.|.+||..+-........+.+ .
T Consensus 17 ~rv~viD~d~~k~--lGmi~~--g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~ 92 (342)
T PF06433_consen 17 SRVYVIDADSGKL--LGMIDT--GFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQ 92 (342)
T ss_dssp EEEEEEETTTTEE--EEEEEE--ESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--
T ss_pred ceEEEEECCCCcE--EEEeec--ccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchhe
Confidence 4688999988753 333321 2233466899999987643 344689999998766554444433 1
Q ss_pred -----CeEEEccCCCeEEEEe--cCCeEEEEeCCC-ceeeeecCCCeEEEEEe--CCEEEEEECCCcEEEEEccC-Ccee
Q 001455 881 -----PIRKLDTYGKTIFAST--QGHRMKVIDSSR-TLKDIYRSKGIKSMSVV--QGKIYIGCMDSSIQELAVSN-NVER 949 (1074)
Q Consensus 881 -----~V~s~s~dg~~L~sgS--~DgtI~VWDl~~-~l~~l~~~~~V~sLa~s--dgkLlaGs~DgsI~IwDl~t-g~~~ 949 (1074)
....++.+++++++-. .-..|.|.|+.. .........+... .+| +..+.+-|.||.+.-..+.. |+..
T Consensus 93 ~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~-iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~ 171 (342)
T PF06433_consen 93 VVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCWL-IYPSGNRGFSMLCGDGSLLTVTLDADGKEA 171 (342)
T ss_dssp BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEEE-EEEEETTEEEEEETTSCEEEEEETSTSSEE
T ss_pred ecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCEEE-EEecCCCceEEEecCCceEEEEECCCCCEe
Confidence 1234667777655543 445677777762 2222222222222 233 66788899999999999874 4443
Q ss_pred eeccccccccCCCCCeEEE-EEc-CCceEEEEEecCCCeEEEEECCCCCeEE--EccC------CC----CCeEEEEEec
Q 001455 950 EIKAPFKSWRLQSKPINSL-VVY-KDWLYSASSSVEGSNIKEWRRHRKPQIS--IAPE------KG----TTIQAMAVVE 1015 (1074)
Q Consensus 950 ~i~~~~r~~~~h~~~I~sL-~~s-pd~i~las~S~dDgtI~IWDl~t~~~i~--~l~g------H~----~~VtsLafSP 1015 (1074)
.. ....+.....++..- .+. .++.+.+.. -.|.|+--|+....... ...- .. +.-.-+++++
T Consensus 172 -~~-~t~~F~~~~dp~f~~~~~~~~~~~~~F~S--y~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~ 247 (342)
T PF06433_consen 172 -QK-STKVFDPDDDPLFEHPAYSRDGGRLYFVS--YEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHA 247 (342)
T ss_dssp -EE-EEEESSTTTS-B-S--EEETTTTEEEEEB--TTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEET
T ss_pred -Ee-eccccCCCCcccccccceECCCCeEEEEe--cCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeecc
Confidence 11 123333334433321 222 333444322 34667766665443211 1100 00 1122366766
Q ss_pred CCCEEEEEE--------CCC--cEEEEECCCCcEEEEEeCCCCeEEEEEc--CC-EEEEE-ECCCcEEEEec
Q 001455 1016 DFIYLNYNS--------SAS--SLQIWLRGTQQKVGRISAGSKITSLLTA--ND-IVLCG-TETGLIKGWIP 1073 (1074)
Q Consensus 1016 DG~~LaSGS--------~DG--tIrIWDl~tg~~l~tL~~hs~VtsLa~d--g~-~LaSG-s~DG~IrIWdi 1073 (1074)
....|..-- .|+ .|-++|..+++.+.++....++.+++.+ .+ .|++. ..+|.+.+||.
T Consensus 248 ~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~ 319 (342)
T PF06433_consen 248 ASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDA 319 (342)
T ss_dssp TTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEEEETTTTEEEEEET
T ss_pred ccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEEEcCCCCeEEEEeC
Confidence 544443311 222 3666689999999999977778787765 23 55544 46899999986
No 335
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.93 E-value=0.36 Score=57.49 Aligned_cols=53 Identities=11% Similarity=0.108 Sum_probs=41.1
Q ss_pred CCCeEEEEEecCCCEEEEEECCCcEEEEECCCCcEEEEEeCC--CCeEEEEEcCC
Q 001455 1005 GTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAG--SKITSLLTAND 1057 (1074)
Q Consensus 1005 ~~~VtsLafSPDG~~LaSGS~DGtIrIWDl~tg~~l~tL~~h--s~VtsLa~dg~ 1057 (1074)
.+++..+++||+|+++|.-..+|.+.|...+-.+.+..+... .....+.|.|+
T Consensus 216 ~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~ 270 (410)
T PF04841_consen 216 DGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGN 270 (410)
T ss_pred CCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECC
Confidence 457999999999999999999999999987766677666655 33555556543
No 336
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=96.90 E-value=0.28 Score=56.11 Aligned_cols=210 Identities=20% Similarity=0.249 Sum_probs=106.4
Q ss_pred CcEEEEECCCCCeeEEEEeccCCCCEEEE---EEcCC----CCEEEEEeC----------CCeEEEEEccCC-----ceE
Q 001455 814 GSIKMWDIKKQSAMLVWDVKEHRKAVTSF---SLFEP----GESLLSGSA----------DKTIGVWQMVQR-----KLE 871 (1074)
Q Consensus 814 GtVrIWDl~t~~~~~i~tl~gH~~~VtsL---afSpd----g~~LaSGS~----------DGtIrIWDl~tg-----~~~ 871 (1074)
+.|++.|..+.+......+..+ ..++++ .|..+ ..+|+.|+. .|.|.++++... ++.
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~-E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~ 80 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPN-EHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLK 80 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETT-EEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEE
T ss_pred cEEEEEeCCCCeEEEEEECCCC-ceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEE
Confidence 3588888887765444445432 334443 34332 355666643 288999998874 444
Q ss_pred EEEEeccCCCeEEEccCCCeEEEEecCCeEEEEeCCCce--eeee---cCCCeEEEEEeCCEEEEEECCCcEEEEEccCC
Q 001455 872 LIEVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSSRTL--KDIY---RSKGIKSMSVVQGKIYIGCMDSSIQELAVSNN 946 (1074)
Q Consensus 872 ~~~~~~h~~~V~s~s~dg~~L~sgS~DgtI~VWDl~~~l--~~l~---~~~~V~sLa~sdgkLlaGs~DgsI~IwDl~tg 946 (1074)
.......+++|.++.+.+..++++ .++.|.+|++.... .... ....+.++..-++.+++|.....+.++.
T Consensus 81 ~i~~~~~~g~V~ai~~~~~~lv~~-~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~sv~~~~---- 155 (321)
T PF03178_consen 81 LIHSTEVKGPVTAICSFNGRLVVA-VGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKNYILVGDAMKSVSLLR---- 155 (321)
T ss_dssp EEEEEEESS-EEEEEEETTEEEEE-ETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETTEEEEEESSSSEEEEE----
T ss_pred EEEEEeecCcceEhhhhCCEEEEe-ecCEEEEEEccCcccchhhheecceEEEEEEeccccEEEEEEcccCEEEEE----
Confidence 444455677777776655553333 34666666665221 1100 0112333333333333333333333332
Q ss_pred ceeeeccccccccCCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEc-cCCCCCeEEEEEecCCCEEEEEEC
Q 001455 947 VEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIA-PEKGTTIQAMAVVEDFIYLNYNSS 1025 (1074)
Q Consensus 947 ~~~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S~dDgtI~IWDl~t~~~i~~l-~gH~~~VtsLafSPDG~~LaSGS~ 1025 (1074)
|+.........- .....+++++.|-+|+..++.+..
T Consensus 156 -------------------------------------------~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~ 192 (321)
T PF03178_consen 156 -------------------------------------------YDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDK 192 (321)
T ss_dssp -------------------------------------------EETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEET
T ss_pred -------------------------------------------EEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcC
Confidence 222111111111 112345777788766678888888
Q ss_pred CCcEEEEECCC-------Cc----EEEEEeCCCCeEEE---EEcC----------CEEEEEECCCcEEEEe
Q 001455 1026 ASSLQIWLRGT-------QQ----KVGRISAGSKITSL---LTAN----------DIVLCGTETGLIKGWI 1072 (1074)
Q Consensus 1026 DGtIrIWDl~t-------g~----~l~tL~~hs~VtsL---a~dg----------~~LaSGs~DG~IrIWd 1072 (1074)
+|.+.++.... +. .+..+..+..|+++ +..+ ..++.++.+|.|.+--
T Consensus 193 ~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l~ 263 (321)
T PF03178_consen 193 DGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVLI 263 (321)
T ss_dssp TSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEEE
T ss_pred CCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEEE
Confidence 88888887542 22 24455555668887 3211 1488899999987543
No 337
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=96.89 E-value=0.038 Score=69.74 Aligned_cols=132 Identities=11% Similarity=0.069 Sum_probs=95.9
Q ss_pred EEeCCCeEEEEEccCCceEEEEEeccCCCeEEEccC-------CCeEEEEecCCeEEEEeCCCc-ee-------eeecCC
Q 001455 853 SGSADKTIGVWQMVQRKLELIEVIATKEPIRKLDTY-------GKTIFASTQGHRMKVIDSSRT-LK-------DIYRSK 917 (1074)
Q Consensus 853 SGS~DGtIrIWDl~tg~~~~~~~~~h~~~V~s~s~d-------g~~L~sgS~DgtI~VWDl~~~-l~-------~l~~~~ 917 (1074)
.......++-.|+..|+.+.........+|..+.|+ +...+.|-.++.+..||++-. .+ ......
T Consensus 499 ~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~ 578 (794)
T PF08553_consen 499 DPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKN 578 (794)
T ss_pred cCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCC
Confidence 344567888999999997766655555668888764 346677888889999998821 11 111234
Q ss_pred CeEEEEEe-CCEEEEEECCCcEEEEEccCCceeeeccccccccCCCCCeEEEEEcCCceEEEEEecCCCeEEEEEC
Q 001455 918 GIKSMSVV-QGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRR 992 (1074)
Q Consensus 918 ~V~sLa~s-dgkLlaGs~DgsI~IwDl~tg~~~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S~dDgtI~IWDl 992 (1074)
...|++-+ +|+++.|+.+|.||+||--. .. . ...+.+-+.||..+..+.||.|+++.+ +..+.+++.
T Consensus 579 ~Fs~~aTt~~G~iavgs~~G~IRLyd~~g-~~--A---KT~lp~lG~pI~~iDvt~DGkwilaTc--~tyLlLi~t 646 (794)
T PF08553_consen 579 NFSCFATTEDGYIAVGSNKGDIRLYDRLG-KR--A---KTALPGLGDPIIGIDVTADGKWILATC--KTYLLLIDT 646 (794)
T ss_pred CceEEEecCCceEEEEeCCCcEEeecccc-hh--h---hhcCCCCCCCeeEEEecCCCcEEEEee--cceEEEEEE
Confidence 46788777 99999999999999999433 21 1 123345689999999999999999887 567777774
No 338
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=96.85 E-value=0.0075 Score=74.47 Aligned_cols=145 Identities=15% Similarity=0.254 Sum_probs=104.0
Q ss_pred CcEEEEEEeCCEEEEEECCCcEEEEECCCCCeeEEEEeccCCCCEEEEEEcCCCCEEEEEeC---------CCeEEEEEc
Q 001455 795 GAVTALIYYKGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSA---------DKTIGVWQM 865 (1074)
Q Consensus 795 ~~VtsLafS~~~LaSGs~DGtVrIWDl~t~~~~~i~tl~gH~~~VtsLafSpdg~~LaSGS~---------DGtIrIWDl 865 (1074)
+.|+-++.++.++++|...|+|.+-|.++.+ .++++..|++.|..+.. .|+.|+|||. |..|+|||+
T Consensus 178 ~~v~imR~Nnr~lf~G~t~G~V~LrD~~s~~--~iht~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDL 253 (1118)
T KOG1275|consen 178 SGVTIMRYNNRNLFCGDTRGTVFLRDPNSFE--TIHTFDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDL 253 (1118)
T ss_pred CceEEEEecCcEEEeecccceEEeecCCcCc--eeeeeeccccceeeeec--cCCeEEEeecccccccccccchhhhhhh
Confidence 3477788878899999999999999999874 48999999999987665 7888999885 566899999
Q ss_pred cCCceEEEEEeccCCCeEEEcc-CCCeEEEEecCCeEEEEe---CCCc---eeeeec-CCCeEEEEEe-CCE-EEEEECC
Q 001455 866 VQRKLELIEVIATKEPIRKLDT-YGKTIFASTQGHRMKVID---SSRT---LKDIYR-SKGIKSMSVV-QGK-IYIGCMD 935 (1074)
Q Consensus 866 ~tg~~~~~~~~~h~~~V~s~s~-dg~~L~sgS~DgtI~VWD---l~~~---l~~l~~-~~~V~sLa~s-dgk-LlaGs~D 935 (1074)
+.-+........-...+..|.| -...+++++..|...+-| +... ...+.. ...+..+.++ +|. ++.|..+
T Consensus 254 Rmmral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~ 333 (1118)
T KOG1275|consen 254 RMMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHE 333 (1118)
T ss_pred hhhhccCCcccccCchhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEeccc
Confidence 8754322111111122223333 345788889999999998 3332 222222 4458888887 666 5569999
Q ss_pred CcEEEEEc
Q 001455 936 SSIQELAV 943 (1074)
Q Consensus 936 gsI~IwDl 943 (1074)
|.|.+|.-
T Consensus 334 g~v~~wa~ 341 (1118)
T KOG1275|consen 334 GHVNLWAD 341 (1118)
T ss_pred CcEeeecC
Confidence 99999973
No 339
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=96.77 E-value=0.0061 Score=72.77 Aligned_cols=75 Identities=17% Similarity=0.227 Sum_probs=62.1
Q ss_pred CCCCcEEEEEEe--CCEEEEEECCCcEEEEECCCCCeeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEccCCc
Q 001455 792 KCSGAVTALIYY--KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRK 869 (1074)
Q Consensus 792 gH~~~VtsLafS--~~~LaSGs~DGtVrIWDl~t~~~~~i~tl~gH~~~VtsLafSpdg~~LaSGS~DGtIrIWDl~tg~ 869 (1074)
.....|.|++++ ...++.|+.||+|.+||...+.. .+..+.-..+.++|+|+|..+++|+..|.+.+||+.-+.
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t----~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVT----LLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSP 332 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCee----eeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCc
Confidence 567788999998 56899999999999999987632 233445668899999999999999999999999987654
Q ss_pred e
Q 001455 870 L 870 (1074)
Q Consensus 870 ~ 870 (1074)
.
T Consensus 333 i 333 (545)
T PF11768_consen 333 I 333 (545)
T ss_pred c
Confidence 3
No 340
>PRK02888 nitrous-oxide reductase; Validated
Probab=96.60 E-value=0.27 Score=60.49 Aligned_cols=202 Identities=9% Similarity=-0.024 Sum_probs=120.5
Q ss_pred cCCCCEEE-EEeCCCeEEEEEccCCceEEEEEeccCCCeEEEccCCCeEEEEecCC----eEEEEeCCCceeeeecCCCe
Q 001455 845 FEPGESLL-SGSADKTIGVWQMVQRKLELIEVIATKEPIRKLDTYGKTIFASTQGH----RMKVIDSSRTLKDIYRSKGI 919 (1074)
Q Consensus 845 Spdg~~La-SGS~DGtIrIWDl~tg~~~~~~~~~h~~~V~s~s~dg~~L~sgS~Dg----tI~VWDl~~~l~~l~~~~~V 919 (1074)
+|||+.+. +.-..+.+.+.|..+.+.......+..-....++++|.++++.+.+. ++...+... ..
T Consensus 201 pnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e-------~d-- 271 (635)
T PRK02888 201 PNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAE-------RD-- 271 (635)
T ss_pred CCCCCEeecccceeEEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeecccc-------Cc--
Confidence 34554432 22234566677777655544444433333456788888888776322 233332221 11
Q ss_pred EEEEE---------eCCEEEEEECCCcEEEEEccC----CceeeeccccccccCCCCCeEEEEEcCCceEEEEEecCCCe
Q 001455 920 KSMSV---------VQGKIYIGCMDSSIQELAVSN----NVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSN 986 (1074)
Q Consensus 920 ~sLa~---------sdgkLlaGs~DgsI~IwDl~t----g~~~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S~dDgt 986 (1074)
..+.| .+|+...- .++.|.++|..+ +.......+ -+.....+.++||+.+++..+.-+.+
T Consensus 272 ~~vvfni~~iea~vkdGK~~~V-~gn~V~VID~~t~~~~~~~v~~yIP------VGKsPHGV~vSPDGkylyVanklS~t 344 (635)
T PRK02888 272 WVVVFNIARIEEAVKAGKFKTI-GGSKVPVVDGRKAANAGSALTRYVP------VPKNPHGVNTSPDGKYFIANGKLSPT 344 (635)
T ss_pred eEEEEchHHHHHhhhCCCEEEE-CCCEEEEEECCccccCCcceEEEEE------CCCCccceEECCCCCEEEEeCCCCCc
Confidence 11222 25553222 367899999887 322222211 26677889999999999988877889
Q ss_pred EEEEECCCCCe------------EEEccCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCC----------CcEEEEEe
Q 001455 987 IKEWRRHRKPQ------------ISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGT----------QQKVGRIS 1044 (1074)
Q Consensus 987 I~IWDl~t~~~------------i~~l~gH~~~VtsLafSPDG~~LaSGS~DGtIrIWDl~t----------g~~l~tL~ 1044 (1074)
+.+.|+.+.+. .....- +......+|+++|....|-.-|..|..||+.+ ...+..+.
T Consensus 345 VSVIDv~k~k~~~~~~~~~~~~vvaevev-GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~d 423 (635)
T PRK02888 345 VTVIDVRKLDDLFDGKIKPRDAVVAEPEL-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLD 423 (635)
T ss_pred EEEEEChhhhhhhhccCCccceEEEeecc-CCCcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceeccc
Confidence 99999876442 222222 23345678999999888888999999999876 34456666
Q ss_pred CCCC---eEE-----EEEcCCEEEEEE
Q 001455 1045 AGSK---ITS-----LLTANDIVLCGT 1063 (1074)
Q Consensus 1045 ~hs~---Vts-----La~dg~~LaSGs 1063 (1074)
.|.. +.. ..++|++|++..
T Consensus 424 V~y~pgh~~~~~g~t~~~dgk~l~~~n 450 (635)
T PRK02888 424 VHYQPGHNHASMGETKEADGKWLVSLN 450 (635)
T ss_pred CCCccceeeecCCCcCCCCCCEEEEcc
Confidence 5532 111 235677777754
No 341
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.57 E-value=0.0059 Score=43.91 Aligned_cols=37 Identities=38% Similarity=0.523 Sum_probs=33.4
Q ss_pred EEEEeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 001455 828 LVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQ 864 (1074)
Q Consensus 828 ~i~tl~gH~~~VtsLafSpdg~~LaSGS~DGtIrIWD 864 (1074)
....+..|...|.++.|++++..+++++.|+.+++||
T Consensus 4 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 4 LLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 3566778999999999999999999999999999996
No 342
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=96.43 E-value=0.84 Score=52.47 Aligned_cols=229 Identities=14% Similarity=0.149 Sum_probs=127.8
Q ss_pred CCcEEEEECCCCCeeEEEEecc-CCC----CEEEEEEcCCCCEEEEE--eCCCeEEEEEccCCceEEEEEeccCCCeEEE
Q 001455 813 DGSIKMWDIKKQSAMLVWDVKE-HRK----AVTSFSLFEPGESLLSG--SADKTIGVWQMVQRKLELIEVIATKEPIRKL 885 (1074)
Q Consensus 813 DGtVrIWDl~t~~~~~i~tl~g-H~~----~VtsLafSpdg~~LaSG--S~DGtIrIWDl~tg~~~~~~~~~h~~~V~s~ 885 (1074)
.-.|.+||..+.....-..+.+ |.. ....++++.||++++.. +---.|.|-|+..++... .....+...-+
T Consensus 66 tDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~--ei~~PGC~~iy 143 (342)
T PF06433_consen 66 TDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVG--EIDTPGCWLIY 143 (342)
T ss_dssp EEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEE--EEEGTSEEEEE
T ss_pred eeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceee--eecCCCEEEEE
Confidence 3468899999876543333432 121 22346778888886543 334568888888776533 22233333333
Q ss_pred ccCCCeEEEEecCCeEEEEeCC--Cceee----eec--CCCeE-EEEEe--CCEEEEEECCCcEEEEEccCCceeeeccc
Q 001455 886 DTYGKTIFASTQGHRMKVIDSS--RTLKD----IYR--SKGIK-SMSVV--QGKIYIGCMDSSIQELAVSNNVEREIKAP 954 (1074)
Q Consensus 886 s~dg~~L~sgS~DgtI~VWDl~--~~l~~----l~~--~~~V~-sLa~s--dgkLlaGs~DgsI~IwDl~tg~~~~i~~~ 954 (1074)
-..++.+.+.+.||.+....+. +.... ++. ...+. .-+++ +++++..+.+|.|+-.|+..........-
T Consensus 144 P~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~ 223 (342)
T PF06433_consen 144 PSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPW 223 (342)
T ss_dssp EEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEE
T ss_pred ecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcc
Confidence 3334568888888888877766 22211 111 12222 22233 56777788899999988877553222100
Q ss_pred --------cccccCCCCCeEEEEEcCC--ceEEEEEec-----CC--CeEEEEECCCCCeEEEccCCCCCeEEEEEecCC
Q 001455 955 --------FKSWRLQSKPINSLVVYKD--WLYSASSSV-----EG--SNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDF 1017 (1074)
Q Consensus 955 --------~r~~~~h~~~I~sL~~spd--~i~las~S~-----dD--gtI~IWDl~t~~~i~~l~gH~~~VtsLafSPDG 1017 (1074)
...|...+- .-+++|+. ..|++--.. .| ..|-++|..+++.+..+.. ..++.+|.++.|.
T Consensus 224 ~~~t~~e~~~~WrPGG~--Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~ 300 (342)
T PF06433_consen 224 SLLTDAEKADGWRPGGW--QLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDD 300 (342)
T ss_dssp ESS-HHHHHTTEEE-SS--S-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSS
T ss_pred cccCccccccCcCCcce--eeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEccCC
Confidence 012222222 33455543 333332111 11 2678888999988887753 2357899999877
Q ss_pred C-EEEEEE-CCCcEEEEECCCCcEEEEEeCC
Q 001455 1018 I-YLNYNS-SASSLQIWLRGTQQKVGRISAG 1046 (1074)
Q Consensus 1018 ~-~LaSGS-~DGtIrIWDl~tg~~l~tL~~h 1046 (1074)
+ +|++.+ .++.+.+||..+|+.++++..-
T Consensus 301 ~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~l 331 (342)
T PF06433_consen 301 KPLLYALSAGDGTLDVYDAATGKLVRSIEQL 331 (342)
T ss_dssp S-EEEEEETTTTEEEEEETTT--EEEEE---
T ss_pred CcEEEEEcCCCCeEEEEeCcCCcEEeehhcc
Confidence 6 555544 5799999999999999998854
No 343
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=96.33 E-value=0.0021 Score=76.67 Aligned_cols=196 Identities=14% Similarity=0.162 Sum_probs=123.4
Q ss_pred CCcEEEEEEe---C-CEEEEEECCCcEEEEECCCCCeeEEEEeccCCCCEEEEEEcCCCC-EEEEEe----CCCeEEEEE
Q 001455 794 SGAVTALIYY---K-GLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGE-SLLSGS----ADKTIGVWQ 864 (1074)
Q Consensus 794 ~~~VtsLafS---~-~~LaSGs~DGtVrIWDl~t~~~~~i~tl~gH~~~VtsLafSpdg~-~LaSGS----~DGtIrIWD 864 (1074)
...+.|+++. + -.++.|..+|.|-+-..+.....-.....+|..+.++++|++-.. .||.|- .|..+.|||
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd 135 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD 135 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence 4567788877 2 268999999999999887543221233468889999999998644 455552 356799999
Q ss_pred ccCCceEE----EEEe--ccCCCeEEEccCCCeEEEEecCCeEEEEeCCCceeeee--cCCCeEEEEEe--CCEEEEEEC
Q 001455 865 MVQRKLEL----IEVI--ATKEPIRKLDTYGKTIFASTQGHRMKVIDSSRTLKDIY--RSKGIKSMSVV--QGKIYIGCM 934 (1074)
Q Consensus 865 l~tg~~~~----~~~~--~h~~~V~s~s~dg~~L~sgS~DgtI~VWDl~~~l~~l~--~~~~V~sLa~s--dgkLlaGs~ 934 (1074)
+.++-... .... .....+.|+..+...+.+|.....++++|++....... ..+.+..+.+. .+..++...
T Consensus 136 i~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~~ 215 (783)
T KOG1008|consen 136 INSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSNS 215 (783)
T ss_pred cccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceeccc
Confidence 98762110 0111 11112334556667888888888999999984332222 24456666664 556778788
Q ss_pred CCcEEEEEccCCceeeeccccccccCC----CCCeEEEEEcCCce-EEEEEecCCCeEEEEECC
Q 001455 935 DSSIQELAVSNNVEREIKAPFKSWRLQ----SKPINSLVVYKDWL-YSASSSVEGSNIKEWRRH 993 (1074)
Q Consensus 935 DgsI~IwDl~tg~~~~i~~~~r~~~~h----~~~I~sL~~spd~i-~las~S~dDgtI~IWDl~ 993 (1074)
||.|-+||....- ..+....... ...+..+++.|... .+++.+.+.++|+.+|+.
T Consensus 216 dg~iAiwD~~rni----enpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 216 DGDIAIWDTYRNI----ENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred cCceeeccchhhh----ccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 9999999942211 1111221112 23478888887532 233445577899999964
No 344
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.31 E-value=0.3 Score=58.58 Aligned_cols=168 Identities=12% Similarity=0.042 Sum_probs=89.7
Q ss_pred EEEccCCCeEEEEecCCeEEEEeCCCceeeeecCCCeEEEEEe-CCEEEEEECCCcEEEE-EccCCceeeeccccccccC
Q 001455 883 RKLDTYGKTIFASTQGHRMKVIDSSRTLKDIYRSKGIKSMSVV-QGKIYIGCMDSSIQEL-AVSNNVEREIKAPFKSWRL 960 (1074)
Q Consensus 883 ~s~s~dg~~L~sgS~DgtI~VWDl~~~l~~l~~~~~V~sLa~s-dgkLlaGs~DgsI~Iw-Dl~tg~~~~i~~~~r~~~~ 960 (1074)
.+.+|+|+.+++ +.||...+|.......... +.-....|. .+++++-..++.|.++ ++.......+..
T Consensus 38 ls~npngr~v~V-~g~geY~iyt~~~~r~k~~--G~g~~~vw~~~n~yAv~~~~~~I~I~kn~~~~~~k~i~~------- 107 (443)
T PF04053_consen 38 LSHNPNGRFVLV-CGDGEYEIYTALAWRNKAF--GSGLSFVWSSRNRYAVLESSSTIKIYKNFKNEVVKSIKL------- 107 (443)
T ss_dssp EEE-TTSSEEEE-EETTEEEEEETTTTEEEEE--EE-SEEEE-TSSEEEEE-TTS-EEEEETTEE-TT------------
T ss_pred EEECCCCCEEEE-EcCCEEEEEEccCCccccc--CceeEEEEecCccEEEEECCCeEEEEEcCccccceEEcC-------
Confidence 346788888777 6677777777432222111 222345565 6777777778889986 443322111211
Q ss_pred CCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEccCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCC---
Q 001455 961 QSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQ--- 1037 (1074)
Q Consensus 961 h~~~I~sL~~spd~i~las~S~dDgtI~IWDl~t~~~i~~l~gH~~~VtsLafSPDG~~LaSGS~DGtIrIWDl~tg--- 1037 (1074)
...+..+-. |..++..+ ++.|.+||..++..++.+... +|..+.|+++|.+++-.+. ..+.|++.+..
T Consensus 108 -~~~~~~If~---G~LL~~~~--~~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~-~~i~il~~~~~~~~ 178 (443)
T PF04053_consen 108 -PFSVEKIFG---GNLLGVKS--SDFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTK-DSIYILKYNLEAVA 178 (443)
T ss_dssp -SS-EEEEE----SSSEEEEE--TTEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S--SEEEEEE-HHHHH
T ss_pred -CcccceEEc---CcEEEEEC--CCCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeC-CeEEEEEecchhcc
Confidence 112333333 44444444 457999999999999888533 4899999999999999885 47888875443
Q ss_pred --------cEEEEEeC-CCCeEEEEEcCCEEEEEECCCcEEE
Q 001455 1038 --------QKVGRISA-GSKITSLLTANDIVLCGTETGLIKG 1070 (1074)
Q Consensus 1038 --------~~l~tL~~-hs~VtsLa~dg~~LaSGs~DG~IrI 1070 (1074)
..+..+.. ...|.+..|.++.++-.+.. +|+-
T Consensus 179 ~~~~~g~e~~f~~~~E~~~~IkSg~W~~d~fiYtT~~-~lkY 219 (443)
T PF04053_consen 179 AIPEEGVEDAFELIHEISERIKSGCWVEDCFIYTTSN-HLKY 219 (443)
T ss_dssp HBTTTB-GGGEEEEEEE-S--SEEEEETTEEEEE-TT-EEEE
T ss_pred cccccCchhceEEEEEecceeEEEEEEcCEEEEEcCC-eEEE
Confidence 02333333 55688888888866655554 5543
No 345
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.30 E-value=0.0081 Score=43.15 Aligned_cols=37 Identities=16% Similarity=0.287 Sum_probs=32.5
Q ss_pred eEEEccCCCCCeEEEEEecCCCEEEEEECCCcEEEEE
Q 001455 997 QISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWL 1033 (1074)
Q Consensus 997 ~i~~l~gH~~~VtsLafSPDG~~LaSGS~DGtIrIWD 1033 (1074)
....+..|...|.++.|.+++.++++++.|+.+++|+
T Consensus 4 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 4 LLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 4455667888999999999999999999999999996
No 346
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=96.21 E-value=1.3 Score=49.11 Aligned_cols=214 Identities=12% Similarity=0.101 Sum_probs=120.1
Q ss_pred CCCCEEEEEeCCCeEEEEEccCCceEEEEEeccCCCeEEEc--cCCCeEEEEecCCeEEEEeCCCce--e----------
Q 001455 846 EPGESLLSGSADKTIGVWQMVQRKLELIEVIATKEPIRKLD--TYGKTIFASTQGHRMKVIDSSRTL--K---------- 911 (1074)
Q Consensus 846 pdg~~LaSGS~DGtIrIWDl~tg~~~~~~~~~h~~~V~s~s--~dg~~L~sgS~DgtI~VWDl~~~l--~---------- 911 (1074)
..++.|+.|+.+| +.+++........ ......+|..+. +.-+.+++.+ |+.+.++++.... .
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~--~i~~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~ 80 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPT--RILKLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKS 80 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccce--eEeecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccc
Confidence 4678899999888 8999883222111 111222366543 4445555554 4999999987211 1
Q ss_pred -----eeecCCCeEEEEE---e-CCEEEEEECCCcEEEEEccCCceeeeccccccccCCCCCeEEEEEcCCceEEEEEec
Q 001455 912 -----DIYRSKGIKSMSV---V-QGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSV 982 (1074)
Q Consensus 912 -----~l~~~~~V~sLa~---s-dgkLlaGs~DgsI~IwDl~tg~~~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S~ 982 (1074)
.+...+++...+. . .+..++......|.+|.+..+..... ...+.+.. ...+.++.+.++...++.
T Consensus 81 ~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~-~~~ke~~l-p~~~~~i~~~~~~i~v~~--- 155 (275)
T PF00780_consen 81 RSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFS-KLLKEISL-PDPPSSIAFLGNKICVGT--- 155 (275)
T ss_pred ccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCccccc-ceeEEEEc-CCCcEEEEEeCCEEEEEe---
Confidence 1222345555551 2 34455666666898888876321100 00011111 467888888866554443
Q ss_pred CCCeEEEEECCCCCeEEEccCCC-----------CCeEEEEEecCCCEEEEEECCCcEEEEECCCCcEEE--EEeCCCCe
Q 001455 983 EGSNIKEWRRHRKPQISIAPEKG-----------TTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVG--RISAGSKI 1049 (1074)
Q Consensus 983 dDgtI~IWDl~t~~~i~~l~gH~-----------~~VtsLafSPDG~~LaSGS~DGtIrIWDl~tg~~l~--tL~~hs~V 1049 (1074)
.+...+.|+.++.....+.... .....+.--+++.+|++- |. +-+|=-..|++.+ .+......
T Consensus 156 -~~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Ll~~--~~-~g~fv~~~G~~~r~~~i~W~~~p 231 (275)
T PF00780_consen 156 -SKGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLSDNEFLLCY--DN-IGVFVNKNGEPSRKSTIQWSSAP 231 (275)
T ss_pred -CCceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeCCceEEEEe--cc-eEEEEcCCCCcCcccEEEcCCch
Confidence 2358888888766544432111 112222233456777764 33 4444334555443 55555667
Q ss_pred EEEEEcCCEEEEEECCCcEEEEec
Q 001455 1050 TSLLTANDIVLCGTETGLIKGWIP 1073 (1074)
Q Consensus 1050 tsLa~dg~~LaSGs~DG~IrIWdi 1073 (1074)
.++++...+|+..+.++ |.||++
T Consensus 232 ~~~~~~~pyli~~~~~~-iEV~~~ 254 (275)
T PF00780_consen 232 QSVAYSSPYLIAFSSNS-IEVRSL 254 (275)
T ss_pred hEEEEECCEEEEECCCE-EEEEEC
Confidence 78888888888877655 999986
No 347
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=96.16 E-value=0.065 Score=65.89 Aligned_cols=97 Identities=13% Similarity=0.101 Sum_probs=71.1
Q ss_pred EEEEEE----CCCcEEEEECCCCCeeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEccCCceEEEEEeccCCC
Q 001455 806 LLCSGF----SDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATKEP 881 (1074)
Q Consensus 806 ~LaSGs----~DGtVrIWDl~t~~~~~i~tl~gH~~~VtsLafSpdg~~LaSGS~DGtIrIWDl~tg~~~~~~~~~h~~~ 881 (1074)
++|.++ ..|+|.||- ++|++..-.+..-| +++++|+|..-.|++|-.-|.+.+|...+.+ .......|+.+
T Consensus 29 lfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~P~h---atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e-~htv~~th~a~ 103 (1416)
T KOG3617|consen 29 LFAVASFSPERGGSVTIFA-DTGEPQRDVTYPVH---ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTE-THTVVETHPAP 103 (1416)
T ss_pred eeEEEEecCCCCceEEEEe-cCCCCCccccccee---hhhhccChHHHHHhhccccceeEEEecCCce-eeeeccCCCCC
Confidence 455444 458888884 33332211222233 5679999999889999999999999987654 44455678877
Q ss_pred eE--EEccCCCeEEEEecCCeEEEEeCC
Q 001455 882 IR--KLDTYGKTIFASTQGHRMKVIDSS 907 (1074)
Q Consensus 882 V~--s~s~dg~~L~sgS~DgtI~VWDl~ 907 (1074)
|. .|+++|..++++..-|.+.+|...
T Consensus 104 i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 104 IQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred ceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 76 478999999999999999999876
No 348
>PHA02713 hypothetical protein; Provisional
Probab=96.16 E-value=0.24 Score=61.37 Aligned_cols=210 Identities=11% Similarity=0.119 Sum_probs=104.1
Q ss_pred eEEEEEccCCceEEEEEeccCC-CeEEEccCCCeEEEEecC------CeEEEEeCCCce-eeeec---CCCeEEEEEeCC
Q 001455 859 TIGVWQMVQRKLELIEVIATKE-PIRKLDTYGKTIFASTQG------HRMKVIDSSRTL-KDIYR---SKGIKSMSVVQG 927 (1074)
Q Consensus 859 tIrIWDl~tg~~~~~~~~~h~~-~V~s~s~dg~~L~sgS~D------gtI~VWDl~~~l-~~l~~---~~~V~sLa~sdg 927 (1074)
.+..||..+++.......+... .......++...+.|+.+ ..+..||..... ..... ...-.+++.-+|
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g 352 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDD 352 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEECC
Confidence 4566777766533211111110 111223455556666643 347778876332 11111 111223444488
Q ss_pred EEEE-EECCC-----cEEEEEccCCceeeeccccccccCCCCCeEEEEEcCCceEEEEEecC------------------
Q 001455 928 KIYI-GCMDS-----SIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVE------------------ 983 (1074)
Q Consensus 928 kLla-Gs~Dg-----sI~IwDl~tg~~~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S~d------------------ 983 (1074)
++++ ||.++ .+..||..+++....... . ....-.+++...+.+|++++...
T Consensus 353 ~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~m-p----~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~ 427 (557)
T PHA02713 353 TIYAIGGQNGTNVERTIECYTMGDDKWKMLPDM-P----IALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEED 427 (557)
T ss_pred EEEEECCcCCCCCCceEEEEECCCCeEEECCCC-C----cccccccEEEECCEEEEEeCCCccccccccccccccccccc
Confidence 8765 66543 478899888665443211 1 01111233344566666654311
Q ss_pred ---CCeEEEEECCCCCeEEEccCCCCCeEEEEEecCCCEEEEEECC------CcEEEEECCC-Cc--EEEEEeCCC-CeE
Q 001455 984 ---GSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSA------SSLQIWLRGT-QQ--KVGRISAGS-KIT 1050 (1074)
Q Consensus 984 ---DgtI~IWDl~t~~~i~~l~gH~~~VtsLafSPDG~~LaSGS~D------GtIrIWDl~t-g~--~l~tL~~hs-~Vt 1050 (1074)
-..+..||..+........-.......-+..-+|+..+.||.+ ..+..||..+ .+ .+..+...- ...
T Consensus 428 ~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~ 507 (557)
T PHA02713 428 THSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALH 507 (557)
T ss_pred ccccceEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccce
Confidence 1357778877765432221111111112223356666667654 2467899776 33 344444332 244
Q ss_pred EEEEcCCEEEEEECCC--cEEEEec
Q 001455 1051 SLLTANDIVLCGTETG--LIKGWIP 1073 (1074)
Q Consensus 1051 sLa~dg~~LaSGs~DG--~IrIWdi 1073 (1074)
....+|++.+.||.|| .+..||+
T Consensus 508 ~~~~~~~iyv~Gg~~~~~~~e~yd~ 532 (557)
T PHA02713 508 TILHDNTIMMLHCYESYMLQDTFNV 532 (557)
T ss_pred eEEECCEEEEEeeecceeehhhcCc
Confidence 4567888999999888 5655554
No 349
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=96.10 E-value=1 Score=51.52 Aligned_cols=203 Identities=13% Similarity=0.028 Sum_probs=109.6
Q ss_pred EEcCCCCE-EEEEeCCCeEEEEEccCCceEEEEEeccCCCeEEEccCCCeEEEEecCCeEEEEeCC-Cce-eeeec----
Q 001455 843 SLFEPGES-LLSGSADKTIGVWQMVQRKLELIEVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSS-RTL-KDIYR---- 915 (1074)
Q Consensus 843 afSpdg~~-LaSGS~DGtIrIWDl~tg~~~~~~~~~h~~~V~s~s~dg~~L~sgS~DgtI~VWDl~-~~l-~~l~~---- 915 (1074)
.|.++... +.+--..+.|.-||..+++.........-..+..+...+ .|+++.. .+.+++.. ... ..+..
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~~~p~~~~~~~~~d~~g-~Lv~~~~--g~~~~~~~~~~~~t~~~~~~~~ 107 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKKRVFPSPGGFSSGALIDAGG-RLIACEH--GVRLLDPDTGGKITLLAEPEDG 107 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCceEEEECCCCcccceeecCCC-eEEEEcc--ccEEEeccCCceeEEeccccCC
Confidence 35566654 455556777778887766543322222222222223322 2322222 23344433 111 11111
Q ss_pred --CCCeEEEEE-eCCEEEEEECC------------CcEEEEEccCCceeeeccccccccCCCCCeEEEEEcCCceEEEEE
Q 001455 916 --SKGIKSMSV-VQGKIYIGCMD------------SSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASS 980 (1074)
Q Consensus 916 --~~~V~sLa~-sdgkLlaGs~D------------gsI~IwDl~tg~~~~i~~~~r~~~~h~~~I~sL~~spd~i~las~ 980 (1074)
....+...+ ++|.++.|... |.++.+|. .+..... +..+-..-+.++|+||+..+...
T Consensus 108 ~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l------~~~~~~~~NGla~SpDg~tly~a 180 (307)
T COG3386 108 LPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRL------LDDDLTIPNGLAFSPDGKTLYVA 180 (307)
T ss_pred CCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEe------ecCcEEecCceEECCCCCEEEEE
Confidence 112333444 36776665443 33444443 2222221 12223455789999999766655
Q ss_pred ecCCCeEEEEECCC--CC-----eEEEccCCCCCeEEEEEecCCCEEEEEECCC-cEEEEECCCCcEEEEEeCC-CCeEE
Q 001455 981 SVEGSNIKEWRRHR--KP-----QISIAPEKGTTIQAMAVVEDFIYLNYNSSAS-SLQIWLRGTQQKVGRISAG-SKITS 1051 (1074)
Q Consensus 981 S~dDgtI~IWDl~t--~~-----~i~~l~gH~~~VtsLafSPDG~~LaSGS~DG-tIrIWDl~tg~~l~tL~~h-s~Vts 1051 (1074)
-...+.|.-|+... +. ....+..+.+..-.++...+|.+.+++..+| .|.+|+.. |+.+..+..+ ..+++
T Consensus 181 DT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~ 259 (307)
T COG3386 181 DTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTN 259 (307)
T ss_pred eCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCcc
Confidence 44456777776642 11 1222223445566788888998876555554 89999988 9999999988 56899
Q ss_pred EEEcC
Q 001455 1052 LLTAN 1056 (1074)
Q Consensus 1052 La~dg 1056 (1074)
++|-|
T Consensus 260 ~~FgG 264 (307)
T COG3386 260 PAFGG 264 (307)
T ss_pred ceEeC
Confidence 88875
No 350
>PRK02888 nitrous-oxide reductase; Validated
Probab=96.06 E-value=0.27 Score=60.43 Aligned_cols=90 Identities=10% Similarity=-0.001 Sum_probs=62.7
Q ss_pred CCeEEEEECCC----CCeEEEccCCCCCeEEEEEecCCCEEEEEE-CCCcEEEEECCCCcE------------EEEEeCC
Q 001455 984 GSNIKEWRRHR----KPQISIAPEKGTTIQAMAVVEDFIYLNYNS-SASSLQIWLRGTQQK------------VGRISAG 1046 (1074)
Q Consensus 984 DgtI~IWDl~t----~~~i~~l~gH~~~VtsLafSPDG~~LaSGS-~DGtIrIWDl~tg~~------------l~tL~~h 1046 (1074)
++.|.+.|..+ +..+.....-......+.++|||+++++++ .+++|.|.|+.+.+. +.+...+
T Consensus 295 gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevG 374 (635)
T PRK02888 295 GSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELG 374 (635)
T ss_pred CCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccC
Confidence 46799999877 322333334455678899999999987766 589999999988653 4444443
Q ss_pred CCeEEEEEc--CCEEEEEECCCcEEEEec
Q 001455 1047 SKITSLLTA--NDIVLCGTETGLIKGWIP 1073 (1074)
Q Consensus 1047 s~VtsLa~d--g~~LaSGs~DG~IrIWdi 1073 (1074)
-.-...+|+ |....|---|..|-.|++
T Consensus 375 lGPLHTaFDg~G~aytslf~dsqv~kwn~ 403 (635)
T PRK02888 375 LGPLHTAFDGRGNAYTTLFLDSQIVKWNI 403 (635)
T ss_pred CCcceEEECCCCCEEEeEeecceeEEEeh
Confidence 222234455 557777888999999985
No 351
>PHA02713 hypothetical protein; Provisional
Probab=96.05 E-value=0.33 Score=60.06 Aligned_cols=222 Identities=11% Similarity=0.068 Sum_probs=114.1
Q ss_pred CcEEEEECCCCCeeEEEEeccCCCCEEEEEEcCCCCEEEEEeCC------CeEEEEEccCCceEEEEEeccCC---CeEE
Q 001455 814 GSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSAD------KTIGVWQMVQRKLELIEVIATKE---PIRK 884 (1074)
Q Consensus 814 GtVrIWDl~t~~~~~i~tl~gH~~~VtsLafSpdg~~LaSGS~D------GtIrIWDl~tg~~~~~~~~~h~~---~V~s 884 (1074)
..+..||..+.+...+..+...... .+++. -++...+.||.+ ..+..||..++.... ...... ....
T Consensus 272 ~~v~~yd~~~~~W~~l~~mp~~r~~-~~~a~-l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~--~~~m~~~R~~~~~ 347 (557)
T PHA02713 272 PCILVYNINTMEYSVISTIPNHIIN-YASAI-VDNEIIIAGGYNFNNPSLNKVYKINIENKIHVE--LPPMIKNRCRFSL 347 (557)
T ss_pred CCEEEEeCCCCeEEECCCCCccccc-eEEEE-ECCEEEEEcCCCCCCCccceEEEEECCCCeEee--CCCCcchhhceeE
Confidence 3567788887765433333221111 12222 356666777754 347788888775422 121111 1122
Q ss_pred EccCCCeEEEEecCC-----eEEEEeCCCce-eeeec---CCCeEEEEEeCCEEEE-EECC-------------------
Q 001455 885 LDTYGKTIFASTQGH-----RMKVIDSSRTL-KDIYR---SKGIKSMSVVQGKIYI-GCMD------------------- 935 (1074)
Q Consensus 885 ~s~dg~~L~sgS~Dg-----tI~VWDl~~~l-~~l~~---~~~V~sLa~sdgkLla-Gs~D------------------- 935 (1074)
...++...+.|+.++ .+..||..... ..... ...-.+++.-+|++++ |+.+
T Consensus 348 ~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~ 427 (557)
T PHA02713 348 AVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEED 427 (557)
T ss_pred EEECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEECCEEEEEeCCCccccccccccccccccccc
Confidence 344566666676553 47888876322 11111 1111223334788665 6544
Q ss_pred ----CcEEEEEccCCceeeeccccccccCCCCCeEEEEEcCCceEEEEEecCC----CeEEEEECCC-CCeE--EEccCC
Q 001455 936 ----SSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEG----SNIKEWRRHR-KPQI--SIAPEK 1004 (1074)
Q Consensus 936 ----gsI~IwDl~tg~~~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S~dD----gtI~IWDl~t-~~~i--~~l~gH 1004 (1074)
..+..||..+++.....+ .. ....-.+++...+.+|++++..+. ..+..||..+ .+.. ..+...
T Consensus 428 ~~~~~~ve~YDP~td~W~~v~~-m~----~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~ 502 (557)
T PHA02713 428 THSSNKVIRYDTVNNIWETLPN-FW----TGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESR 502 (557)
T ss_pred ccccceEEEECCCCCeEeecCC-CC----cccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcc
Confidence 247778887766543321 10 111223456667777877553211 2467899877 4432 222222
Q ss_pred CCCeEEEEEecCCCEEEEEECCC--cEEEEECCCCcEEEEEeCC
Q 001455 1005 GTTIQAMAVVEDFIYLNYNSSAS--SLQIWLRGTQQKVGRISAG 1046 (1074)
Q Consensus 1005 ~~~VtsLafSPDG~~LaSGS~DG--tIrIWDl~tg~~l~tL~~h 1046 (1074)
......+ .-+|+..++||.|| ++..||..+.+....-..|
T Consensus 503 r~~~~~~--~~~~~iyv~Gg~~~~~~~e~yd~~~~~W~~~~~~~ 544 (557)
T PHA02713 503 LSALHTI--LHDNTIMMLHCYESYMLQDTFNVYTYEWNHICHQH 544 (557)
T ss_pred cccceeE--EECCEEEEEeeecceeehhhcCcccccccchhhhc
Confidence 2222222 22788889999888 7788887776654433333
No 352
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=95.92 E-value=0.44 Score=59.17 Aligned_cols=224 Identities=13% Similarity=0.106 Sum_probs=122.1
Q ss_pred EEEEEECC------CcEEEEECCCCCeeEEEEeccCCCCEEEEEEcCCCCEEEEEeCC------CeEEEEEccCCceEEE
Q 001455 806 LLCSGFSD------GSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSAD------KTIGVWQMVQRKLELI 873 (1074)
Q Consensus 806 ~LaSGs~D------GtVrIWDl~t~~~~~i~tl~gH~~~VtsLafSpdg~~LaSGS~D------GtIrIWDl~tg~~~~~ 873 (1074)
.++.||.+ ..|..+|..++.......+. +...-.++++. ++...++||.| .++..||..+++...
T Consensus 287 l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~-~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~- 363 (571)
T KOG4441|consen 287 LVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMP-SPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTP- 363 (571)
T ss_pred EEEECCCCCCCcccceeEEecCCcCcEeecCCCC-cccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCceec-
Confidence 45566655 46888999887655444443 22334444543 45667888888 357788888876432
Q ss_pred EEeccCCCeE---EEccCCCeEEEEecCC-----eEEEEeCCCceeeeec----CCCeEEEEEeCCEEEE-EECC-----
Q 001455 874 EVIATKEPIR---KLDTYGKTIFASTQGH-----RMKVIDSSRTLKDIYR----SKGIKSMSVVQGKIYI-GCMD----- 935 (1074)
Q Consensus 874 ~~~~h~~~V~---s~s~dg~~L~sgS~Dg-----tI~VWDl~~~l~~l~~----~~~V~sLa~sdgkLla-Gs~D----- 935 (1074)
......+-. .-.-+|...++|+.|| ++-.||.....-.... ...-..++.-+|++++ ||.+
T Consensus 364 -~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~ 442 (571)
T KOG4441|consen 364 -VAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNC 442 (571)
T ss_pred -cCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCccc
Confidence 222222111 1235666777888776 4667777632222211 1112233334888765 6543
Q ss_pred -CcEEEEEccCCceeeeccccccccCCCCCeEEEEEcCCceEEEEEecC---CCeEEEEECCCCCeEEEccCCCCCeEEE
Q 001455 936 -SSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVE---GSNIKEWRRHRKPQISIAPEKGTTIQAM 1011 (1074)
Q Consensus 936 -gsI~IwDl~tg~~~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S~d---DgtI~IWDl~t~~~i~~l~gH~~~VtsL 1011 (1074)
.++..||..++......+. .. ...-..++...+.+|.+++..+ ..+|..||..+.+....- .-.......
T Consensus 443 l~sve~YDP~t~~W~~~~~M-~~----~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~-~m~~~rs~~ 516 (571)
T KOG4441|consen 443 LNSVECYDPETNTWTLIAPM-NT----RRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVA-PMTSPRSAV 516 (571)
T ss_pred cceEEEEcCCCCceeecCCc-cc----ccccceEEEECCEEEEECCccCCCccceEEEEcCCCCceeEcc-cCccccccc
Confidence 4577888888766544221 11 1222336666777777766421 135788998776644321 111111122
Q ss_pred E-EecCCCEEEEEECCC-----cEEEEECCCCcE
Q 001455 1012 A-VVEDFIYLNYNSSAS-----SLQIWLRGTQQK 1039 (1074)
Q Consensus 1012 a-fSPDG~~LaSGS~DG-----tIrIWDl~tg~~ 1039 (1074)
. ..-++...+.|+.|| +|..||..+.+.
T Consensus 517 g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~W 550 (571)
T KOG4441|consen 517 GVVVLGGKLYAVGGFDGNNNLNTVECYDPETDTW 550 (571)
T ss_pred cEEEECCEEEEEecccCccccceeEEcCCCCCce
Confidence 1 123567777888775 566676555443
No 353
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=95.91 E-value=0.3 Score=47.33 Aligned_cols=97 Identities=26% Similarity=0.393 Sum_probs=66.6
Q ss_pred EEEEEEcC---CCC-EEEEEeCCCeEEEEEccCCceEEEEEeccCCCeEEEc-cCCCeEEEEecCCeEEEEeCCCceeee
Q 001455 839 VTSFSLFE---PGE-SLLSGSADKTIGVWQMVQRKLELIEVIATKEPIRKLD-TYGKTIFASTQGHRMKVIDSSRTLKDI 913 (1074)
Q Consensus 839 VtsLafSp---dg~-~LaSGS~DGtIrIWDl~tg~~~~~~~~~h~~~V~s~s-~dg~~L~sgS~DgtI~VWDl~~~l~~l 913 (1074)
|+++++.. +|. .|+.||.|..||+|+-.. . .......+.|+++. ..+..++.+..+|+|-+|+-....-..
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e--~--~~Ei~e~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~~RlWRi 77 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE--I--VAEITETDKVTSLCSLGGGRFAYALANGTVGVYDRSQRLWRI 77 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc--E--EEEEecccceEEEEEcCCCEEEEEecCCEEEEEeCcceeeee
Confidence 56666653 443 499999999999998542 2 22233455566654 345789999999999999986555455
Q ss_pred ecCCCeEEEEEe----CC--EEEEEECCCcEE
Q 001455 914 YRSKGIKSMSVV----QG--KIYIGCMDSSIQ 939 (1074)
Q Consensus 914 ~~~~~V~sLa~s----dg--kLlaGs~DgsI~ 939 (1074)
.....+.++.+- +| .+++|-.+|.|-
T Consensus 78 KSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 78 KSKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred ccCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 555567777763 33 388898888774
No 354
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=95.86 E-value=0.52 Score=58.48 Aligned_cols=211 Identities=12% Similarity=0.103 Sum_probs=111.6
Q ss_pred CeEEEEEccCCceEEEEEeccCCCeEE-EccCCCeEEEEecC-C-----eEEEEeCCCce-eeee---cCCCeEEEEEeC
Q 001455 858 KTIGVWQMVQRKLELIEVIATKEPIRK-LDTYGKTIFASTQG-H-----RMKVIDSSRTL-KDIY---RSKGIKSMSVVQ 926 (1074)
Q Consensus 858 GtIrIWDl~tg~~~~~~~~~h~~~V~s-~s~dg~~L~sgS~D-g-----tI~VWDl~~~l-~~l~---~~~~V~sLa~sd 926 (1074)
..+..+|..++...............+ ...++...++|+.| | ++..||..... .... ....-..++.-+
T Consensus 301 ~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l~ 380 (571)
T KOG4441|consen 301 RSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVLD 380 (571)
T ss_pred ceeEEecCCcCcEeecCCCCcccccccEEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEEC
Confidence 357788888775433222222222222 33455677777777 3 56777776322 1111 111222334448
Q ss_pred CEEEE-EECCC-----cEEEEEccCCceeeeccccccccCCCCCeEEEEEcCCceEEEEEecCC----CeEEEEECCCCC
Q 001455 927 GKIYI-GCMDS-----SIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEG----SNIKEWRRHRKP 996 (1074)
Q Consensus 927 gkLla-Gs~Dg-----sI~IwDl~tg~~~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S~dD----gtI~IWDl~t~~ 996 (1074)
|.+++ ||.|| ++-.||..+.+.....+. . ....-..++...+.+|++++.... .++..||..++.
T Consensus 381 g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m----~-~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~ 455 (571)
T KOG4441|consen 381 GKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPM----L-TRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNT 455 (571)
T ss_pred CEEEEEeccccccccccEEEecCCCCcccccCCC----C-cceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCc
Confidence 88766 77775 466777777554332111 0 122233444556666666553111 368889987776
Q ss_pred eEEEccCCCCCeEEEEEecCCCEEEEEECCC-----cEEEEECCCCcEEEE--EeCC-CCeEEEEEcCCEEEEEECCCc-
Q 001455 997 QISIAPEKGTTIQAMAVVEDFIYLNYNSSAS-----SLQIWLRGTQQKVGR--ISAG-SKITSLLTANDIVLCGTETGL- 1067 (1074)
Q Consensus 997 ~i~~l~gH~~~VtsLafSPDG~~LaSGS~DG-----tIrIWDl~tg~~l~t--L~~h-s~VtsLa~dg~~LaSGs~DG~- 1067 (1074)
......-.......-.-.-++...+.||.|+ +|..||..+.+.... +... +.+.....++...+.||.||.
T Consensus 456 W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~~~~ly~vGG~~~~~ 535 (571)
T KOG4441|consen 456 WTLIAPMNTRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVLGGKLYAVGGFDGNN 535 (571)
T ss_pred eeecCCcccccccceEEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEEEECCEEEEEecccCcc
Confidence 4332221111111112233677778888776 377788776655333 2222 224446677888889999884
Q ss_pred ----EEEEec
Q 001455 1068 ----IKGWIP 1073 (1074)
Q Consensus 1068 ----IrIWdi 1073 (1074)
|..|||
T Consensus 536 ~l~~ve~ydp 545 (571)
T KOG4441|consen 536 NLNTVECYDP 545 (571)
T ss_pred ccceeEEcCC
Confidence 555554
No 355
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=95.82 E-value=4.1 Score=45.30 Aligned_cols=200 Identities=9% Similarity=0.029 Sum_probs=103.2
Q ss_pred EEeccCCCCEEEEEEcCCCCEE-EEEeCCCeEEEEEccCCceEEEEEeccCCCeEEE--ccCCCeEEEEecCCeEEEEeC
Q 001455 830 WDVKEHRKAVTSFSLFEPGESL-LSGSADKTIGVWQMVQRKLELIEVIATKEPIRKL--DTYGKTIFASTQGHRMKVIDS 906 (1074)
Q Consensus 830 ~tl~gH~~~VtsLafSpdg~~L-aSGS~DGtIrIWDl~tg~~~~~~~~~h~~~V~s~--s~dg~~L~sgS~DgtI~VWDl 906 (1074)
..+.+-...+..++|+|+...| ++....+.|...+. +|+.............-.+ ..++.++++--.++.+.++++
T Consensus 15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~ 93 (248)
T PF06977_consen 15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTI 93 (248)
T ss_dssp EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE
T ss_pred eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEE
Confidence 3455666779999999987765 55566777777776 4665544433332333333 344445554446888988887
Q ss_pred CC---c-----eeeee------cCCCeEEEEEe--CCEEEEEECCCcEEEEEccC---Cceeee--ccccccccCCCCCe
Q 001455 907 SR---T-----LKDIY------RSKGIKSMSVV--QGKIYIGCMDSSIQELAVSN---NVEREI--KAPFKSWRLQSKPI 965 (1074)
Q Consensus 907 ~~---~-----l~~l~------~~~~V~sLa~s--dgkLlaGs~DgsI~IwDl~t---g~~~~i--~~~~r~~~~h~~~I 965 (1074)
.. . ...+. .+.++-.++|. .++++.+.......+|.+.. +..... ......-......+
T Consensus 94 ~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 173 (248)
T PF06977_consen 94 DDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDL 173 (248)
T ss_dssp ----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS--
T ss_pred eccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccc
Confidence 41 1 11111 23458899996 67788888777777777764 111111 00000011224457
Q ss_pred EEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEccCC---------CCCeEEEEEecCCCEEEEEECCCcEEEE
Q 001455 966 NSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEK---------GTTIQAMAVVEDFIYLNYNSSASSLQIW 1032 (1074)
Q Consensus 966 ~sL~~spd~i~las~S~dDgtI~IWDl~t~~~i~~l~gH---------~~~VtsLafSPDG~~LaSGS~DGtIrIW 1032 (1074)
..+.++|..-.+..-+.++..+..+| ..|+.+..+.-. -...-.|+|+++|.+.+++ +-+..++|
T Consensus 174 S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs-EpNlfy~f 247 (248)
T PF06977_consen 174 SGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS-EPNLFYRF 247 (248)
T ss_dssp -EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE-TTTEEEEE
T ss_pred cceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc-CCceEEEe
Confidence 88999987654444555788899999 445544433211 1356789999999765554 56655554
No 356
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=95.75 E-value=6.2 Score=47.10 Aligned_cols=187 Identities=12% Similarity=0.091 Sum_probs=98.7
Q ss_pred cEEEEECCCCCeeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEccCCceEEEEEeccC---CCe-----EEEc
Q 001455 815 SIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATK---EPI-----RKLD 886 (1074)
Q Consensus 815 tVrIWDl~t~~~~~i~tl~gH~~~VtsLafSpdg~~LaSGS~DGtIrIWDl~tg~~~~~~~~~h~---~~V-----~s~s 886 (1074)
.|+||+..+.. +.++.--.+.|.++.|+.+ ..|+....||+++++|+. |+. ....+.. ..| ....
T Consensus 62 ~I~iys~sG~l---l~~i~w~~~~iv~~~wt~~-e~LvvV~~dG~v~vy~~~-G~~--~fsl~~~i~~~~v~e~~i~~~~ 134 (410)
T PF04841_consen 62 SIQIYSSSGKL---LSSIPWDSGRIVGMGWTDD-EELVVVQSDGTVRVYDLF-GEF--QFSLGEEIEEEKVLECRIFAIW 134 (410)
T ss_pred EEEEECCCCCE---eEEEEECCCCEEEEEECCC-CeEEEEEcCCEEEEEeCC-Cce--eechhhhccccCcccccccccc
Confidence 59999987653 3443333389999999875 456677789999999986 333 1111111 111 1112
Q ss_pred cCCCeEEEEecCCeEEEEe-CCCcee--ee---ec-------CCCeEEE-EEe-CC-EEEEEECCCcEEEEEccCCceee
Q 001455 887 TYGKTIFASTQGHRMKVID-SSRTLK--DI---YR-------SKGIKSM-SVV-QG-KIYIGCMDSSIQELAVSNNVERE 950 (1074)
Q Consensus 887 ~dg~~L~sgS~DgtI~VWD-l~~~l~--~l---~~-------~~~V~sL-a~s-dg-kLlaGs~DgsI~IwDl~tg~~~~ 950 (1074)
..+.-++..+.++.+.+.+ ...... .. .. ......+ .+. ++ ..+....++.+.+.+-.....
T Consensus 135 ~~~~GivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~-- 212 (410)
T PF04841_consen 135 FYKNGIVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ-- 212 (410)
T ss_pred cCCCCEEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc--
Confidence 2223345555555554443 221111 11 00 0001111 122 22 233344445555444332100
Q ss_pred eccccccccCCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEccCC-CCCeEEEEEecCCCE
Q 001455 951 IKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEK-GTTIQAMAVVEDFIY 1019 (1074)
Q Consensus 951 i~~~~r~~~~h~~~I~sL~~spd~i~las~S~dDgtI~IWDl~t~~~i~~l~gH-~~~VtsLafSPDG~~ 1019 (1074)
.....++..++++|++.+++... ++|.+.+.+.+-.+....+... ......+.|.-+...
T Consensus 213 --------i~~~~~i~~iavSpng~~iAl~t-~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~dav 273 (410)
T PF04841_consen 213 --------IDSDGPIIKIAVSPNGKFIALFT-DSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDAV 273 (410)
T ss_pred --------ccCCCCeEEEEECCCCCEEEEEE-CCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCcE
Confidence 11246899999999999998887 6788888886655554444333 335567777655443
No 357
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=95.62 E-value=0.056 Score=65.03 Aligned_cols=93 Identities=11% Similarity=0.054 Sum_probs=74.6
Q ss_pred CCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEccCCCCCeE-EEEEecCCCEEEEEECCCcEEEEECCCCcEE
Q 001455 962 SKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQ-AMAVVEDFIYLNYNSSASSLQIWLRGTQQKV 1040 (1074)
Q Consensus 962 ~~~I~sL~~spd~i~las~S~dDgtI~IWDl~t~~~i~~l~gH~~~Vt-sLafSPDG~~LaSGS~DGtIrIWDl~tg~~l 1040 (1074)
...+.-+.++|..-.++... .+|.+.+...+ .+.+-++.-|+.+++ +++|.|||+.||.|-.||+|++.|.++|..+
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t-~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRT-EKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRL 97 (665)
T ss_pred ccceEEEEEcCccchhheec-cCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCce
Confidence 45677788888877777665 67888888887 555666766777777 9999999999999999999999999999998
Q ss_pred EE--EeCCCCeEEEEEcC
Q 001455 1041 GR--ISAGSKITSLLTAN 1056 (1074)
Q Consensus 1041 ~t--L~~hs~VtsLa~dg 1056 (1074)
.. +.....|.++.|+.
T Consensus 98 ~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 98 VSFLFSVETDISKGIWDR 115 (665)
T ss_pred eccccccccchheeeccc
Confidence 87 44446688877763
No 358
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=95.50 E-value=0.92 Score=51.88 Aligned_cols=128 Identities=16% Similarity=0.240 Sum_probs=88.6
Q ss_pred CcEEEEECCCC-----CeeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEccCCc-eEEEEEeccCCCeEEEcc
Q 001455 814 GSIKMWDIKKQ-----SAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRK-LELIEVIATKEPIRKLDT 887 (1074)
Q Consensus 814 GtVrIWDl~t~-----~~~~i~tl~gH~~~VtsLafSpdg~~LaSGS~DGtIrIWDl~tg~-~~~~~~~~h~~~V~s~s~ 887 (1074)
|.|.++++... +...+... ...++|++++-. +.+|+.+. .+.|.+|++...+ ............+.++..
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~-~~~g~V~ai~~~--~~~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~ 137 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHST-EVKGPVTAICSF--NGRLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSV 137 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEE-EESS-EEEEEEE--TTEEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEE
T ss_pred cEEEEEEEEcccccceEEEEEEEE-eecCcceEhhhh--CCEEEEee-cCEEEEEEccCcccchhhheecceEEEEEEec
Confidence 89999999884 33333333 457899999875 33455444 5789999999888 666666666668888988
Q ss_pred CCCeEEEEecCCeEEEEeCC--Cc-eeeeec---CCCeEEEEEe-CC-EEEEEECCCcEEEEEccC
Q 001455 888 YGKTIFASTQGHRMKVIDSS--RT-LKDIYR---SKGIKSMSVV-QG-KIYIGCMDSSIQELAVSN 945 (1074)
Q Consensus 888 dg~~L~sgS~DgtI~VWDl~--~~-l~~l~~---~~~V~sLa~s-dg-kLlaGs~DgsI~IwDl~t 945 (1074)
.++++++|+....+.++..+ .. ...+.. ...+.++.+- ++ .++++..+|.+.++....
T Consensus 138 ~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 138 FKNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNP 203 (321)
T ss_dssp ETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-S
T ss_pred cccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECC
Confidence 89999999988888877543 22 222222 3347777775 54 688899999999998864
No 359
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.46 E-value=0.8 Score=50.98 Aligned_cols=207 Identities=15% Similarity=0.165 Sum_probs=110.4
Q ss_pred EEEECCCCCeeEE------EEeccCCCCEEEEEEcCCCCEEEEEeCC-----CeEEEEEccCCceEEEEEeccCCCe--E
Q 001455 817 KMWDIKKQSAMLV------WDVKEHRKAVTSFSLFEPGESLLSGSAD-----KTIGVWQMVQRKLELIEVIATKEPI--R 883 (1074)
Q Consensus 817 rIWDl~t~~~~~i------~tl~gH~~~VtsLafSpdg~~LaSGS~D-----GtIrIWDl~tg~~~~~~~~~h~~~V--~ 883 (1074)
.++|.++.+.... +.|.||. .|||||.+|+..-+| |.|-|||.+.+-...-....|.-.- .
T Consensus 94 ~vfD~~~~~~pv~~~s~~~RHfyGHG------vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev 167 (366)
T COG3490 94 MVFDPNGAQEPVTLVSQEGRHFYGHG------VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEV 167 (366)
T ss_pred EEECCCCCcCcEEEecccCceeeccc------ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCccee
Confidence 4677776543211 1233553 589999999866443 7899999985432222222222221 3
Q ss_pred EEccCCCeEEEEecC------------------CeEEEEeC-CCce---eeee---cCCCeEEEEEe-CCEEEEEEC---
Q 001455 884 KLDTYGKTIFASTQG------------------HRMKVIDS-SRTL---KDIY---RSKGIKSMSVV-QGKIYIGCM--- 934 (1074)
Q Consensus 884 s~s~dg~~L~sgS~D------------------gtI~VWDl-~~~l---~~l~---~~~~V~sLa~s-dgkLlaGs~--- 934 (1074)
.+.++|+.++.+... ..+.+.|. .+.+ .++. ..-.|+.+... ||.+++||.
T Consensus 168 ~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G 247 (366)
T COG3490 168 TLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRG 247 (366)
T ss_pred EEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeC
Confidence 467888877766321 11122221 1110 0111 12347777775 888888763
Q ss_pred ---CCcEEEEEccCCce-eeeccccccccCCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEccCCCCCeEE
Q 001455 935 ---DSSIQELAVSNNVE-REIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQA 1010 (1074)
Q Consensus 935 ---DgsI~IwDl~tg~~-~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S~dDgtI~IWDl~t~~~i~~l~gH~~~Vts 1010 (1074)
|..--+=-...++. .....+...+......|-+++.+.+..+++..+|.++...+||..+|..+....-. .+..
T Consensus 248 ~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l~--daaG 325 (366)
T COG3490 248 PRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAALP--DAAG 325 (366)
T ss_pred CCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEeccccc--cccc
Confidence 11111111122222 11122222333346778899999777777778889999999999999876533211 1112
Q ss_pred EEEecCCCEEEEEECCCcEEEEE
Q 001455 1011 MAVVEDFIYLNYNSSASSLQIWL 1033 (1074)
Q Consensus 1011 LafSPDG~~LaSGS~DGtIrIWD 1033 (1074)
++ +...-++..+.+|.+.++.
T Consensus 326 va--~~~~gf~vssg~G~~~~~s 346 (366)
T COG3490 326 VA--AAKGGFAVSSGQGRIIFYS 346 (366)
T ss_pred ce--eccCceEEecCCceEEecc
Confidence 22 2223344445578887764
No 360
>PRK13616 lipoprotein LpqB; Provisional
Probab=95.35 E-value=1.6 Score=54.49 Aligned_cols=198 Identities=11% Similarity=0.148 Sum_probs=109.9
Q ss_pred cCCCCEEEEEEcCCCCEEEEEe------CCCeEEEEEccCCceEEEEEeccCCCeEEEccCCCeEEEEecCCeE-EEEeC
Q 001455 834 EHRKAVTSFSLFEPGESLLSGS------ADKTIGVWQMVQRKLELIEVIATKEPIRKLDTYGKTIFASTQGHRM-KVIDS 906 (1074)
Q Consensus 834 gH~~~VtsLafSpdg~~LaSGS------~DGtIrIWDl~tg~~~~~~~~~h~~~V~s~s~dg~~L~sgS~DgtI-~VWDl 906 (1074)
+....+.+.+++|+|+.++... .|+.-.+|-...+........+....--+|+++|..+++......+ ++.+
T Consensus 347 g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~g~~~t~PsWspDG~~lw~v~dg~~~~~v~~- 425 (591)
T PRK13616 347 GQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLEGHSLTRPSWSLDADAVWVVVDGNTVVRVIR- 425 (591)
T ss_pred ccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeecCCCCCCceECCCCCceEEEecCcceEEEec-
Confidence 3334678999999999976544 2444444433222212222223222233588888888877643221 1111
Q ss_pred CCceeeeecCCCeEEEEEeCCEEEEEECCCcEEEEEccCCceeeeccccccccCCCCCeEEEEEcCCceEEEEEecCCCe
Q 001455 907 SRTLKDIYRSKGIKSMSVVQGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSN 986 (1074)
Q Consensus 907 ~~~l~~l~~~~~V~sLa~sdgkLlaGs~DgsI~IwDl~tg~~~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S~dDgt 986 (1074)
....+.+.+.++..+.... .....|..+.++|||..++... ++.
T Consensus 426 -------------------------~~~~gql~~~~vd~ge~~~---------~~~g~Issl~wSpDG~RiA~i~--~g~ 469 (591)
T PRK13616 426 -------------------------DPATGQLARTPVDASAVAS---------RVPGPISELQLSRDGVRAAMII--GGK 469 (591)
T ss_pred -------------------------cCCCceEEEEeccCchhhh---------ccCCCcCeEEECCCCCEEEEEE--CCE
Confidence 1123456555665543311 1145699999999999887655 466
Q ss_pred EEE---EECCCCCeEEE-----c-cCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCC-CcEEEEEeCC---CCeEEEE
Q 001455 987 IKE---WRRHRKPQISI-----A-PEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGT-QQKVGRISAG---SKITSLL 1053 (1074)
Q Consensus 987 I~I---WDl~t~~~i~~-----l-~gH~~~VtsLafSPDG~~LaSGS~DGtIrIWDl~t-g~~l~tL~~h---s~VtsLa 1053 (1074)
|.+ -....|. ... + .+-...+.++.|.+++.++ .+..++...+|.+.- |.....+..+ .++.+++
T Consensus 470 v~Va~Vvr~~~G~-~~l~~~~~l~~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~va 547 (591)
T PRK13616 470 VYLAVVEQTEDGQ-YALTNPREVGPGLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVA 547 (591)
T ss_pred EEEEEEEeCCCCc-eeecccEEeecccCCccccceEecCCEEE-EEecCCCCceEEEecCCccccccCCCCccCceEEEe
Confidence 766 3334443 221 2 2233346889999999855 555555556665322 2222222332 3477777
Q ss_pred EcCCEEEEEECCCcEEE
Q 001455 1054 TANDIVLCGTETGLIKG 1070 (1074)
Q Consensus 1054 ~dg~~LaSGs~DG~IrI 1070 (1074)
-++..++.++.+|.+.+
T Consensus 548 a~~~~iyv~~~~g~~~l 564 (591)
T PRK13616 548 ASPSTVYVTDARAVLQL 564 (591)
T ss_pred cCCceEEEEcCCceEEe
Confidence 77667777777775543
No 361
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=95.30 E-value=0.52 Score=45.68 Aligned_cols=95 Identities=24% Similarity=0.316 Sum_probs=63.0
Q ss_pred EEEEEEe----C--CEEEEEECCCcEEEEECCCCCeeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEccCCce
Q 001455 797 VTALIYY----K--GLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKL 870 (1074)
Q Consensus 797 VtsLafS----~--~~LaSGs~DGtVrIWDl~t~~~~~i~tl~gH~~~VtsLafSpdg~~LaSGS~DGtIrIWDl~tg~~ 870 (1074)
|+++++. + +.|++|+.|..||||+-.. .+.++.. .+.|++++-... ..++.+-.+|+|-+|+-....
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e----~~~Ei~e-~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~Rl- 74 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE----IVAEITE-TDKVTSLCSLGG-GRFAYALANGTVGVYDRSQRL- 74 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc----EEEEEec-ccceEEEEEcCC-CEEEEEecCCEEEEEeCccee-
Confidence 6777776 2 3699999999999999763 3566644 466888887665 568889999999999854322
Q ss_pred EEEEEeccCCCeEE---EccC--CC-eEEEEecCCeE
Q 001455 871 ELIEVIATKEPIRK---LDTY--GK-TIFASTQGHRM 901 (1074)
Q Consensus 871 ~~~~~~~h~~~V~s---~s~d--g~-~L~sgS~DgtI 901 (1074)
.....+..+.+ +..+ |. .+++|-.+|.|
T Consensus 75 ---WRiKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkv 108 (111)
T PF14783_consen 75 ---WRIKSKNQVTSMAFYDINGDGVPELIVGWSNGKV 108 (111)
T ss_pred ---eeeccCCCeEEEEEEcCCCCCceEEEEEecCCeE
Confidence 22223333443 2333 22 57777777765
No 362
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=95.28 E-value=4.8 Score=49.62 Aligned_cols=71 Identities=21% Similarity=0.354 Sum_probs=44.1
Q ss_pred EEEeCCEEEEEECCCcEEEEECCCCCeeEEEEec--cCCC--CEEEEEEcCCCCEEEEEe------CCCeEEEEEccCCc
Q 001455 800 LIYYKGLLCSGFSDGSIKMWDIKKQSAMLVWDVK--EHRK--AVTSFSLFEPGESLLSGS------ADKTIGVWQMVQRK 869 (1074)
Q Consensus 800 LafS~~~LaSGs~DGtVrIWDl~t~~~~~i~tl~--gH~~--~VtsLafSpdg~~LaSGS------~DGtIrIWDl~tg~ 869 (1074)
+++.++.++.++.||.+.-.|..+++. +.... .+.. .+++--.-.++ .++.++ .+|.|..+|..+|+
T Consensus 116 ~av~~~~v~v~t~dg~l~ALDa~TGk~--~W~~~~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~ 192 (527)
T TIGR03075 116 VALYDGKVFFGTLDARLVALDAKTGKV--VWSKKNGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGK 192 (527)
T ss_pred ceEECCEEEEEcCCCEEEEEECCCCCE--EeecccccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCc
Confidence 345577888899999999999999865 33332 1211 12211111134 444443 37899999999998
Q ss_pred eEEE
Q 001455 870 LELI 873 (1074)
Q Consensus 870 ~~~~ 873 (1074)
....
T Consensus 193 ~lW~ 196 (527)
T TIGR03075 193 LVWR 196 (527)
T ss_pred eeEe
Confidence 7654
No 363
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=95.18 E-value=1.5 Score=50.92 Aligned_cols=237 Identities=9% Similarity=0.015 Sum_probs=123.2
Q ss_pred CcEEEEECCCCCeeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEccCCceEEEEEeccCCC------------
Q 001455 814 GSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATKEP------------ 881 (1074)
Q Consensus 814 GtVrIWDl~t~~~~~i~tl~gH~~~VtsLafSpdg~~LaSGS~DGtIrIWDl~tg~~~~~~~~~h~~~------------ 881 (1074)
+.+.|||+.+++. ..+......+....|+|+|+.++-.. ++.|.+++..++........+ ...
T Consensus 23 ~~y~i~d~~~~~~---~~l~~~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg-~~~i~nG~~dwvyeE 97 (353)
T PF00930_consen 23 GDYYIYDIETGEI---TPLTPPPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDG-EPGIYNGVPDWVYEE 97 (353)
T ss_dssp EEEEEEETTTTEE---EESS-EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES---TTTEEESB--HHHHH
T ss_pred eeEEEEecCCCce---EECcCCccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEecccc-ceeEEcCccceeccc
Confidence 5688999999754 33333367788999999999988776 678999998877544333323 111
Q ss_pred -------eEEEccCCCeEEEEecC-CeEEEEeCC---CceeeeecCCCeEEEEEe-CC-EEEEEECCCcEEEEEccCCce
Q 001455 882 -------IRKLDTYGKTIFASTQG-HRMKVIDSS---RTLKDIYRSKGIKSMSVV-QG-KIYIGCMDSSIQELAVSNNVE 948 (1074)
Q Consensus 882 -------V~s~s~dg~~L~sgS~D-gtI~VWDl~---~~l~~l~~~~~V~sLa~s-dg-kLlaGs~DgsI~IwDl~tg~~ 948 (1074)
..-++|++++|+....| ..|..+.+. .... ....+..+.++ -| .. ..-.+.++|+.+++.
T Consensus 98 Ev~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~---~yp~~~~~~YPk~G~~n----p~v~l~v~~~~~~~~ 170 (353)
T PF00930_consen 98 EVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDS---QYPEVESIRYPKAGDPN----PRVSLFVVDLASGKT 170 (353)
T ss_dssp HTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTE---SS-EEEEEE--BTTS-------EEEEEEEESSSTCC
T ss_pred cccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccc---cCCcccccccCCCCCcC----CceEEEEEECCCCcE
Confidence 12367888888777543 334333321 0000 00124445554 11 11 011466788888765
Q ss_pred eeeccccccccCCCCCeEEEEEcCCce-EEEEEecCCC---eEEEEECCCCCeEEEcc-CCCCCe---EEEEEe-cCCC-
Q 001455 949 REIKAPFKSWRLQSKPINSLVVYKDWL-YSASSSVEGS---NIKEWRRHRKPQISIAP-EKGTTI---QAMAVV-EDFI- 1018 (1074)
Q Consensus 949 ~~i~~~~r~~~~h~~~I~sL~~spd~i-~las~S~dDg---tI~IWDl~t~~~i~~l~-gH~~~V---tsLafS-PDG~- 1018 (1074)
..+..+. .+......+..+.+.+++. +.+.....+. .+.++|..++....... ....+| ....|. +++.
T Consensus 171 ~~~~~~~-~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~ 249 (353)
T PF00930_consen 171 TELDPPN-SLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNE 249 (353)
T ss_dssp CEE---H-HHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSE
T ss_pred EEeeecc-ccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCE
Confidence 4332221 1233466788899988877 5554443222 45667776665432222 122222 355554 5554
Q ss_pred EEEEEECCCcEEEE--ECCCCcEEEEEeCC-CCeEE-EEEc--CC-EEEEEEC
Q 001455 1019 YLNYNSSASSLQIW--LRGTQQKVGRISAG-SKITS-LLTA--ND-IVLCGTE 1064 (1074)
Q Consensus 1019 ~LaSGS~DGtIrIW--Dl~tg~~l~tL~~h-s~Vts-La~d--g~-~LaSGs~ 1064 (1074)
++.....||.-+|| +...+. ...+..+ -.|+. +.++ ++ +.++|..
T Consensus 250 ~l~~s~~~G~~hly~~~~~~~~-~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~ 301 (353)
T PF00930_consen 250 FLWISERDGYRHLYLYDLDGGK-PRQLTSGDWEVTSILGWDEDNNRIYFTANG 301 (353)
T ss_dssp EEEEEETTSSEEEEEEETTSSE-EEESS-SSS-EEEEEEEECTSSEEEEEESS
T ss_pred EEEEEEcCCCcEEEEEcccccc-eeccccCceeecccceEcCCCCEEEEEecC
Confidence 55555577766665 445554 3344433 33755 4455 34 4445554
No 364
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=95.11 E-value=0.78 Score=54.37 Aligned_cols=202 Identities=15% Similarity=0.196 Sum_probs=99.6
Q ss_pred CCCcEEEEEEe-CCEEEEEECCCcEEEEECCCCCeeEEEEecc------CCCCEEEEEEc-----CCC---CEEEEEeCC
Q 001455 793 CSGAVTALIYY-KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKE------HRKAVTSFSLF-----EPG---ESLLSGSAD 857 (1074)
Q Consensus 793 H~~~VtsLafS-~~~LaSGs~DGtVrIWDl~t~~~~~i~tl~g------H~~~VtsLafS-----pdg---~~LaSGS~D 857 (1074)
..++|++++.+ =|++|.|+.+|.+.|.|+++........+.. ....|+++.|. .|+ -.++.|...
T Consensus 85 ~~g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~ 164 (395)
T PF08596_consen 85 KQGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNS 164 (395)
T ss_dssp -S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETT
T ss_pred cCCcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEeCC
Confidence 38999999999 6899999999999999998775432223333 33568889887 233 248899999
Q ss_pred CeEEEEEccC---CceEEEEE--e-ccCCCeEEEccCCCeEEEEecCCeEEEEeCCCcee---------eeecCCCeEEE
Q 001455 858 KTIGVWQMVQ---RKLELIEV--I-ATKEPIRKLDTYGKTIFASTQGHRMKVIDSSRTLK---------DIYRSKGIKSM 922 (1074)
Q Consensus 858 GtIrIWDl~t---g~~~~~~~--~-~h~~~V~s~s~dg~~L~sgS~DgtI~VWDl~~~l~---------~l~~~~~V~sL 922 (1074)
|.+.+|.+.- +....... . .+.++|.. |...|...... .+.....+
T Consensus 165 G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~----------------I~~i~~~~G~~a~At~~~~~~l~~g~~i--- 225 (395)
T PF08596_consen 165 GNVLTFKILPSSNGRFSVQFAGATTNHDSPILS----------------IIPINADTGESALATISAMQGLSKGISI--- 225 (395)
T ss_dssp SEEEEEEEEE-GGG-EEEEEEEEE--SS----E----------------EEEEETTT--B-B-BHHHHHGGGGT------
T ss_pred CCEEEEEEecCCCCceEEEEeeccccCCCceEE----------------EEEEECCCCCcccCchhHhhccccCCCc---
Confidence 9999998742 21111110 0 11222221 11112110000 00001111
Q ss_pred EEeCCEEEEEECCCcEEEEEccCCceeeeccccccccCCCCCeEEEEE-----cCCceEEEEEecCCCeEEEEECCCCCe
Q 001455 923 SVVQGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVV-----YKDWLYSASSSVEGSNIKEWRRHRKPQ 997 (1074)
Q Consensus 923 a~sdgkLlaGs~DgsI~IwDl~tg~~~~i~~~~r~~~~h~~~I~sL~~-----spd~i~las~S~dDgtI~IWDl~t~~~ 997 (1074)
++ ++..+.+..++++...+.+... +.| ........+.+ ...+..+++.. .+|.+++|.+-.-+.
T Consensus 226 ---~g-~vVvvSe~~irv~~~~~~k~~~-----K~~-~~~~~~~~~~vv~~~~~~~~~~Lv~l~-~~G~i~i~SLP~Lke 294 (395)
T PF08596_consen 226 ---PG-YVVVVSESDIRVFKPPKSKGAH-----KSF-DDPFLCSSASVVPTISRNGGYCLVCLF-NNGSIRIYSLPSLKE 294 (395)
T ss_dssp ----E-EEEEE-SSEEEEE-TT---EEE-----EE--SS-EEEEEEEEEEEE-EEEEEEEEEEE-TTSEEEEEETTT--E
T ss_pred ---Cc-EEEEEcccceEEEeCCCCcccc-----eee-ccccccceEEEEeecccCCceEEEEEE-CCCcEEEEECCCchH
Confidence 12 4455667889999887755422 222 11112222223 23455555554 789999999877666
Q ss_pred EEEccCCC----CCeEEEEEecCCCEEEEEE
Q 001455 998 ISIAPEKG----TTIQAMAVVEDFIYLNYNS 1024 (1074)
Q Consensus 998 i~~l~gH~----~~VtsLafSPDG~~LaSGS 1024 (1074)
+....-+. ..+....++++|..++-.|
T Consensus 295 i~~~~l~~~~d~~~~~~ssis~~Gdi~~~~g 325 (395)
T PF08596_consen 295 IKSVSLPPPLDSRRLSSSSISRNGDIFYWTG 325 (395)
T ss_dssp EEEEE-SS---HHHHTT-EE-TTS-EEEE-S
T ss_pred hhcccCCCccccccccccEECCCCCEEEEeC
Confidence 55443322 2345667788888776655
No 365
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.95 E-value=0.43 Score=56.75 Aligned_cols=138 Identities=10% Similarity=0.083 Sum_probs=92.3
Q ss_pred CCCE-EEEEeCCCeEEEEEccCCceEEEEEeccCCCeEEEccCCC-------eEEEEecCCeEEEEeCC--Cc--eeeee
Q 001455 847 PGES-LLSGSADKTIGVWQMVQRKLELIEVIATKEPIRKLDTYGK-------TIFASTQGHRMKVIDSS--RT--LKDIY 914 (1074)
Q Consensus 847 dg~~-LaSGS~DGtIrIWDl~tg~~~~~~~~~h~~~V~s~s~dg~-------~L~sgS~DgtI~VWDl~--~~--l~~l~ 914 (1074)
+... +.++.....++-.|++.|+.+........-++..+.++.. .-+.|-.+..|.-||++ +. +....
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q 423 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQ 423 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeee
Confidence 3344 4566666778888999998765444444435555555433 34556677889999987 11 11112
Q ss_pred c-----CCCeEEEEEe-CCEEEEEECCCcEEEEEccCCceeeeccccccccCCCCCeEEEEEcCCceEEEEEecCCCeEE
Q 001455 915 R-----SKGIKSMSVV-QGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIK 988 (1074)
Q Consensus 915 ~-----~~~V~sLa~s-dgkLlaGs~DgsI~IwDl~tg~~~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S~dDgtI~ 988 (1074)
. .....|.+-. +|.+++|+.+|.|++||-...+-++ .+.+-+.+|..+..+.+|.++++.. +..+.
T Consensus 424 ~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdri~~~AKT------AlPgLG~~I~hVdvtadGKwil~Tc--~tyLl 495 (644)
T KOG2395|consen 424 SKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDRIGRRAKT------ALPGLGDAIKHVDVTADGKWILATC--KTYLL 495 (644)
T ss_pred ccccccccccceeeecCCceEEEeecCCcEEeehhhhhhhhh------cccccCCceeeEEeeccCcEEEEec--ccEEE
Confidence 2 3335566665 9999999999999999984322222 3356689999999999999998876 56676
Q ss_pred EEEC
Q 001455 989 EWRR 992 (1074)
Q Consensus 989 IWDl 992 (1074)
+.+.
T Consensus 496 Li~t 499 (644)
T KOG2395|consen 496 LIDT 499 (644)
T ss_pred EEEE
Confidence 6663
No 366
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=94.93 E-value=8.2 Score=45.54 Aligned_cols=206 Identities=13% Similarity=0.086 Sum_probs=134.6
Q ss_pred CEEEEEEcCCCCE-EEEEeCCCeEEEEEccCCceEEEEEeccCCCeEEEccCCCeEEEEec---CCeEEEEeCCC--cee
Q 001455 838 AVTSFSLFEPGES-LLSGSADKTIGVWQMVQRKLELIEVIATKEPIRKLDTYGKTIFASTQ---GHRMKVIDSSR--TLK 911 (1074)
Q Consensus 838 ~VtsLafSpdg~~-LaSGS~DGtIrIWDl~tg~~~~~~~~~h~~~V~s~s~dg~~L~sgS~---DgtI~VWDl~~--~l~ 911 (1074)
.-..+++++.+.. .++...++.|.+.|..+.+.......+....-..+++++..++++.. ++++.+.|... ...
T Consensus 75 ~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~ 154 (381)
T COG3391 75 YPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTA 154 (381)
T ss_pred cccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEE
Confidence 3457788888886 45555678999999877766555555554445578899988877765 57888888662 233
Q ss_pred eeecCCCeEEEEEe-CCE-EEE-EECCCcEEEEEccCCceeeeccccccccCCCCCeEEEEEcCCceEEEEEecC--CCe
Q 001455 912 DIYRSKGIKSMSVV-QGK-IYI-GCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVE--GSN 986 (1074)
Q Consensus 912 ~l~~~~~V~sLa~s-dgk-Lla-Gs~DgsI~IwDl~tg~~~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S~d--Dgt 986 (1074)
.......-..++++ +|. ++. -..++.|.++|..+..... ..+ ............+.+.+++.++...... ++.
T Consensus 155 ~~~vG~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~~-~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~ 232 (381)
T COG3391 155 TIPVGNTPTGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GSV-GSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNN 232 (381)
T ss_pred EEecCCCcceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-ccc-ccccccCCCCceEEECCCCCEEEEEeccCCCce
Confidence 33333223677775 665 444 4578999999977644332 110 0011224455677888887755444322 258
Q ss_pred EEEEECCCCCeEEE--ccCCCCCeEEEEEecCCCEEEEEE-CCCcEEEEECCCCcEEEEEeCC
Q 001455 987 IKEWRRHRKPQISI--APEKGTTIQAMAVVEDFIYLNYNS-SASSLQIWLRGTQQKVGRISAG 1046 (1074)
Q Consensus 987 I~IWDl~t~~~i~~--l~gH~~~VtsLafSPDG~~LaSGS-~DGtIrIWDl~tg~~l~tL~~h 1046 (1074)
+...|..++..... ..+.. ....+.++|+|.++.... ..+.+.+-|..+......+..+
T Consensus 233 v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~ 294 (381)
T COG3391 233 VLKIDTATGNVTATDLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTG 294 (381)
T ss_pred EEEEeCCCceEEEeccccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeeccc
Confidence 88889888776654 22222 566789999999988874 4488999998888877766544
No 367
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=94.81 E-value=2.3 Score=50.96 Aligned_cols=186 Identities=12% Similarity=0.053 Sum_probs=105.6
Q ss_pred eccCCCCEEEEEEcCCCCEEEEE---eCC-CeEEEEEccCCceEEEEEeccCCCeEEEccCCCeEEEEe-cCC--eEEEE
Q 001455 832 VKEHRKAVTSFSLFEPGESLLSG---SAD-KTIGVWQMVQRKLELIEVIATKEPIRKLDTYGKTIFAST-QGH--RMKVI 904 (1074)
Q Consensus 832 l~gH~~~VtsLafSpdg~~LaSG---S~D-GtIrIWDl~tg~~~~~~~~~h~~~V~s~s~dg~~L~sgS-~Dg--tI~VW 904 (1074)
+..-...+..-+|+|++..++-. ... ..+.++|+.+++...............|+|+|+.++... .|+ .|.++
T Consensus 188 l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~ 267 (425)
T COG0823 188 LTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLM 267 (425)
T ss_pred ecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccEEEE
Confidence 33344567778899999885533 122 468999999987655444445555667999999776554 556 46666
Q ss_pred eCCC-ceeeeecCCCeEE-EEEe-CCE-EE-EEECCCc--EEEEEccCCceeeeccccccccCCCCCeEEEEEcCCceEE
Q 001455 905 DSSR-TLKDIYRSKGIKS-MSVV-QGK-IY-IGCMDSS--IQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYS 977 (1074)
Q Consensus 905 Dl~~-~l~~l~~~~~V~s-La~s-dgk-Ll-aGs~Dgs--I~IwDl~tg~~~~i~~~~r~~~~h~~~I~sL~~spd~i~l 977 (1074)
|+.. ....+....++.. =.|+ +|+ ++ +.+..|. |.++|...+....+. +...... .-.++|+|.++
T Consensus 268 dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT-----~~~~~~~--~p~~SpdG~~i 340 (425)
T COG0823 268 DLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLT-----FSGGGNS--NPVWSPDGDKI 340 (425)
T ss_pred cCCCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEee-----ccCCCCc--CccCCCCCCEE
Confidence 7663 2223333333332 2233 666 43 3444554 555566655432221 1111111 55677888888
Q ss_pred EEEecCCCe--EEEEECCCCCeEEEccCCCCCeEEEEEecCCCEEEEEEC
Q 001455 978 ASSSVEGSN--IKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSS 1025 (1074)
Q Consensus 978 as~S~dDgt--I~IWDl~t~~~i~~l~gH~~~VtsLafSPDG~~LaSGS~ 1025 (1074)
+..+..+|. |.+.|..++...+.+. +......-.|.|+|+.+...+.
T Consensus 341 ~~~~~~~g~~~i~~~~~~~~~~~~~lt-~~~~~e~ps~~~ng~~i~~~s~ 389 (425)
T COG0823 341 VFESSSGGQWDIDKNDLASGGKIRILT-STYLNESPSWAPNGRMIMFSSG 389 (425)
T ss_pred EEEeccCCceeeEEeccCCCCcEEEcc-ccccCCCCCcCCCCceEEEecc
Confidence 766544454 5666665555344332 2233445567888887776553
No 368
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=94.80 E-value=0.13 Score=62.15 Aligned_cols=75 Identities=16% Similarity=0.223 Sum_probs=63.5
Q ss_pred CcEEEEEEeC--CEEEEEECCCcEEEEECCCCCeeEEEEeccCCCCEE-EEEEcCCCCEEEEEeCCCeEEEEEccCCceE
Q 001455 795 GAVTALIYYK--GLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVT-SFSLFEPGESLLSGSADKTIGVWQMVQRKLE 871 (1074)
Q Consensus 795 ~~VtsLafS~--~~LaSGs~DGtVrIWDl~t~~~~~i~tl~gH~~~Vt-sLafSpdg~~LaSGS~DGtIrIWDl~tg~~~ 871 (1074)
-.|.-+.|++ +++|++..+|.|.+..++- ..+.++.-|...++ +++|.|||+.|+.|-.||+|++-|+.+|...
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n~---qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLNW---QRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRL 97 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEecc---ceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCce
Confidence 4567788884 4799999999999999883 23788877787787 9999999999999999999999999988654
Q ss_pred E
Q 001455 872 L 872 (1074)
Q Consensus 872 ~ 872 (1074)
.
T Consensus 98 ~ 98 (665)
T KOG4640|consen 98 V 98 (665)
T ss_pred e
Confidence 3
No 369
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=94.77 E-value=0.045 Score=58.85 Aligned_cols=140 Identities=11% Similarity=0.101 Sum_probs=85.2
Q ss_pred eEEEEecCCeEEEEeCCCceeeeecCCCeEEE-EE--eCCEEEEEECCCcEEEEEccCCceeeeccccccccCCCCCeEE
Q 001455 891 TIFASTQGHRMKVIDSSRTLKDIYRSKGIKSM-SV--VQGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINS 967 (1074)
Q Consensus 891 ~L~sgS~DgtI~VWDl~~~l~~l~~~~~V~sL-a~--sdgkLlaGs~DgsI~IwDl~tg~~~~i~~~~r~~~~h~~~I~s 967 (1074)
.+..-+.++.|.-++++...........+.+. .+ .+.++++|+.+|.|++|....-.... .........|.+
T Consensus 32 ~l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~-----d~~~s~~e~i~~ 106 (238)
T KOG2444|consen 32 LLRATSADGLVRERKVRKHKESCRSERFIDEGQRVVTASAKLMVGTSDGAVYVFNWNLEGAHS-----DRVCSGEESIDL 106 (238)
T ss_pred hhccccCCcccccchhhhhhhhhhhhhhhhcceeecccCceEEeecccceEEEecCCccchHH-----Hhhhccccccee
Confidence 45555777888888776322222221112222 11 26679999999999999887311100 111122333433
Q ss_pred EEEc-CCceEEEEEecCCCeEEEEECCCCCeEEEccCCC-CCeEEEEEecCCCEEEEE--ECCCcEEEEECCC
Q 001455 968 LVVY-KDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKG-TTIQAMAVVEDFIYLNYN--SSASSLQIWLRGT 1036 (1074)
Q Consensus 968 L~~s-pd~i~las~S~dDgtI~IWDl~t~~~i~~l~gH~-~~VtsLafSPDG~~LaSG--S~DGtIrIWDl~t 1036 (1074)
.... .++.+..++ ..+|.|+.|++..++.+.....|. .++.....+..+++++++ |.|..++.|++..
T Consensus 107 ~Ip~~~~~~~~c~~-~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 107 GIPNGRDSSLGCVG-AQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred ccccccccceeEEe-ccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 3333 333333333 378999999998888777777777 567777777777777777 7788888887654
No 370
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.66 E-value=0.35 Score=61.53 Aligned_cols=109 Identities=18% Similarity=0.259 Sum_probs=77.0
Q ss_pred CCcEEEEEEeCCEEEEEECCCcEEEEECCCCCeeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEccCCceEEE
Q 001455 794 SGAVTALIYYKGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELI 873 (1074)
Q Consensus 794 ~~~VtsLafS~~~LaSGs~DGtVrIWDl~t~~~~~i~tl~gH~~~VtsLafSpdg~~LaSGS~DGtIrIWDl~tg~~~~~ 873 (1074)
...|.+.+.-+..++.|++.|.|-..|..+.-. +.+.-..-.++|++++|+.+|..++.|-.+|.|.+||+.+++...
T Consensus 89 ~~~v~s~a~~~~~ivi~Ts~ghvl~~d~~~nL~-~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~- 166 (1206)
T KOG2079|consen 89 AAGVISSAIVVVPIVIGTSHGHVLLSDMTGNLG-PLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILK- 166 (1206)
T ss_pred CcceeeeeeeeeeEEEEcCchhhhhhhhhcccc-hhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCccee-
Confidence 455666666678899999999999999876421 112222345899999999999999999999999999999877543
Q ss_pred EEeccCCCeEE-----EccCCCeEEEEecCCeEEEEeC
Q 001455 874 EVIATKEPIRK-----LDTYGKTIFASTQGHRMKVIDS 906 (1074)
Q Consensus 874 ~~~~h~~~V~s-----~s~dg~~L~sgS~DgtI~VWDl 906 (1074)
....+..+.+. ....+..++++...|. +|..
T Consensus 167 ~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 167 VITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred eeeecCCccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 33334444433 2344556778877776 5553
No 371
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=94.64 E-value=0.23 Score=60.63 Aligned_cols=141 Identities=12% Similarity=0.139 Sum_probs=91.8
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCeEEEEEccCCceEEEEEeccCCC--eEEEccCCCeEEEEecCCeEEEEeCCC----
Q 001455 835 HRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATKEP--IRKLDTYGKTIFASTQGHRMKVIDSSR---- 908 (1074)
Q Consensus 835 H~~~VtsLafSpdg~~LaSGS~DGtIrIWDl~tg~~~~~~~~~h~~~--V~s~s~dg~~L~sgS~DgtI~VWDl~~---- 908 (1074)
|...|.--+++..+++++.|+.-|.+.+|+-..|........+.... +.++++...++++|+..|.|.++-++.
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~ 111 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPR 111 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCC
Confidence 44556666777899999999999999999987776443332222222 234778888999999999999998762
Q ss_pred ceeeee-----cCCCeEEEEEe-CCE-EEEEECCCcEEEEEccCCceeeeccccccccCCCCCeEEEEEcCCceEE
Q 001455 909 TLKDIY-----RSKGIKSMSVV-QGK-IYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYS 977 (1074)
Q Consensus 909 ~l~~l~-----~~~~V~sLa~s-dgk-LlaGs~DgsI~IwDl~tg~~~~i~~~~r~~~~h~~~I~sL~~spd~i~l 977 (1074)
....+. +...|++++|+ +++ +++|...|.|..-.+.+.. ....++..+.....+|-.+........+
T Consensus 112 ~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~--~~~~~~q~il~~ds~IVQlD~~q~~LLV 185 (726)
T KOG3621|consen 112 DLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQ--AFLSKSQEILSEDSEIVQLDYLQSYLLV 185 (726)
T ss_pred cceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhh--hhccccceeeccCcceEEeecccceehH
Confidence 111111 13459999998 665 9999999999988887621 1111112222335566666655544433
No 372
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=94.43 E-value=0.77 Score=57.96 Aligned_cols=335 Identities=17% Similarity=0.194 Sum_probs=197.2
Q ss_pred CcchhhhhhhHHhhHhhhhcchhhhhhhhhcCCCchHHHHHHhhcch--hhHHHHHhcCCC-----hhhhhhccchhHHH
Q 001455 312 SKEETVIRASVSILTTIILANESVIEDIKKKGLRLSDLATALKRNVP--EAAILIYLIKPS-----PTEIKTLELLPTLV 384 (1074)
Q Consensus 312 s~~~~v~~~~v~il~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~--~a~vl~~l~~~~-----~~~~~~~~~~~~l~ 384 (1074)
-+-+++++.++++|..+. .|..+.....++| =+..++..|+++-. --.++..|-+-+ +.+|.+...+|.|+
T Consensus 260 ~kQeqLlrv~~~lLlNLA-ed~~ve~kM~~~~-iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~ 337 (708)
T PF05804_consen 260 RKQEQLLRVAFYLLLNLA-EDPRVELKMVNKG-IVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLL 337 (708)
T ss_pred HHHHHHHHHHHHHHHHHh-cChHHHHHHHhcC-CHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHH
Confidence 357889999999988875 4555666666554 47778899988522 222233333333 89999999999999
Q ss_pred HHHhccccccCcccccccCchhhHHHHHHHHhhccccccchhhhhhhcchhhHhHHHHHHhcCChHHHHHHHHHHHhhhh
Q 001455 385 EVICTSKLYKGKLESVRLTPPAASLMIIEVLVTAFDYATNNMHLAAINSPRVLCGLLDVARHQNLEELISLATILVKCIQ 464 (1074)
Q Consensus 385 ~v~~~~~~~~~~~~~~~~~p~~aa~~~l~~ll~~~d~~~~~~~~~~~~s~~~l~~l~~~~~~~~~~e~~~~~~il~~C~~ 464 (1074)
+.+.++++. . ...|+.+|-.| +|| .....++++.|+++.|+.-+..++..+ .+..||- -+-
T Consensus 338 kLl~s~~~~---l-------~~~aLrlL~NL--Sfd----~~~R~~mV~~GlIPkLv~LL~d~~~~~--val~iLy-~LS 398 (708)
T PF05804_consen 338 KLLPSENED---L-------VNVALRLLFNL--SFD----PELRSQMVSLGLIPKLVELLKDPNFRE--VALKILY-NLS 398 (708)
T ss_pred HHhcCCCHH---H-------HHHHHHHHHHh--CcC----HHHHHHHHHCCCcHHHHHHhCCCchHH--HHHHHHH-Hhc
Confidence 999876532 1 24455555555 454 345667789999999999998765443 3444444 333
Q ss_pred ccCcchhHHHhhcCCcchhhhhhcC-CchhHHHHHHHHHHHhccCchhhHHHHHHhhccCchhHHHHHHHHhhcccchhh
Q 001455 465 FDGQCRKYLSEFTAVAPLACLLQSG-EKRAIMIALEFFHEILRIPRSSAIDLLQRIHKEGNINILHILKLSLQQLQSDYQ 543 (1074)
Q Consensus 465 ~dg~cr~~ia~~~~~~~~~~ll~~~-~~~~~~~a~~~l~ell~l~r~~~~~~l~~~~~~~~~~~mh~ll~~lq~~~~~~~ 543 (1074)
.|..||+.++..-....++++|-.+ +......++.++.-|- ++++.+..+. ++|++.. |+-...+. +-
T Consensus 399 ~dd~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa-~~~rnaqlm~----~g~gL~~---L~~ra~~~---~D 467 (708)
T PF05804_consen 399 MDDEARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLA-LNKRNAQLMC----EGNGLQS---LMKRALKT---RD 467 (708)
T ss_pred cCHhhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHh-cCHHHHHHHH----hcCcHHH---HHHHHHhc---cc
Confidence 3667999999887777788866555 4444455566665544 4444443333 3444432 22222221 12
Q ss_pred HHHHHHHhhhccccCCCCCCcchHHHHHHHHHHHhccCChhhHHHHHHHHHhcCccccccCchhhHHHHHHHhCCCcchh
Q 001455 544 LLAANLLLQLDTLENTTGKSVFTEEAMQVILKAVASEESSTMQLLSSFILSNIGGTFSWTGEPYTVAWLVKKAGLNSSWL 623 (1074)
Q Consensus 544 ~~~a~lllqldll~~p~~~s~yreea~~~~~~~l~~~~~~~~q~~~~~~l~~l~g~fs~sG~~~~~~~llk~ag~~~~~~ 623 (1074)
|+...++=-+=. -+|.-...| .+.|.-|+.++..+++...+..|-=+|.||.= ++ +.-+-+++..+|..--.
T Consensus 468 ~lLlKlIRNiS~-h~~~~k~~f-~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~----~~--ld~~~ll~~~~llp~L~ 539 (708)
T PF05804_consen 468 PLLLKLIRNISQ-HDGPLKELF-VDFIGDLAKIVSSGDSEEFVVECLGILANLTI----PD--LDWAQLLQEYNLLPWLK 539 (708)
T ss_pred HHHHHHHHHHHh-cCchHHHHH-HHHHHHHHHHhhcCCcHHHHHHHHHHHHhccc----CC--cCHHHHHHhCCHHHHHH
Confidence 333222211100 121112234 45788899999888888888877777777752 22 23344677777766543
Q ss_pred hhhhccCCcccchhhhh----chhhhhHHHHHHHHhcCc--hhHHHHHhhhhcCCcccccccchhhHhhhcc
Q 001455 624 QNMIRNFDWLDQSLQDR----GVDSWSSKIAKSIIEIGK--PIYYALEKGLKSKTKSVCRDSLTTIAWLSFE 689 (1074)
Q Consensus 624 ~~~~~~~~~~d~~~~e~----~~~~w~~~~a~~l~~~~~--~~l~aLs~~l~s~~~~L~~~cL~~~~WL~~~ 689 (1074)
........ .|+-.-|. +.=.-..+.|..|.++|- .+.+.|.. +....|++-.++.+.++|.+.
T Consensus 540 ~~L~~g~~-~dDl~LE~Vi~~gtla~d~~~A~lL~~sgli~~Li~LL~~--kqeDdE~VlQil~~f~~ll~h 608 (708)
T PF05804_consen 540 DLLKPGAS-EDDLLLEVVILLGTLASDPECAPLLAKSGLIPTLIELLNA--KQEDDEIVLQILYVFYQLLFH 608 (708)
T ss_pred HHhCCCCC-ChHHHHHHHHHHHHHHCCHHHHHHHHhCChHHHHHHHHHh--hCchHHHHHHHHHHHHHHHcC
Confidence 33222211 12222222 222345677777778774 34455533 344678887788777776655
No 373
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=94.11 E-value=25 Score=45.42 Aligned_cols=274 Identities=9% Similarity=0.039 Sum_probs=139.6
Q ss_pred CCCCcEEEEEEe-----CC---EEEEEECCCcEEEEECCCCCeeEEEE-ec--cCCCCEEEEEEcCCCCEEEEEeCCCeE
Q 001455 792 KCSGAVTALIYY-----KG---LLCSGFSDGSIKMWDIKKQSAMLVWD-VK--EHRKAVTSFSLFEPGESLLSGSADKTI 860 (1074)
Q Consensus 792 gH~~~VtsLafS-----~~---~LaSGs~DGtVrIWDl~t~~~~~i~t-l~--gH~~~VtsLafSpdg~~LaSGS~DGtI 860 (1074)
.-...|.|+.++ ++ +++.|.++..+.+--....-....+. +. .-...|.-..|-.|..+|.++..||.+
T Consensus 528 ~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l 607 (1096)
T KOG1897|consen 528 EFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGAL 607 (1096)
T ss_pred eecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceE
Confidence 346789999998 22 68999888877766443322222222 11 122455666676778899999999998
Q ss_pred EEEE--ccCCceEEEE--EeccCCC-eEEEccCCCeEEEEecCCeEEEEeCCCceeeeec-CCCeEEEE-Ee-C--CEEE
Q 001455 861 GVWQ--MVQRKLELIE--VIATKEP-IRKLDTYGKTIFASTQGHRMKVIDSSRTLKDIYR-SKGIKSMS-VV-Q--GKIY 930 (1074)
Q Consensus 861 rIWD--l~tg~~~~~~--~~~h~~~-V~s~s~dg~~L~sgS~DgtI~VWDl~~~l~~l~~-~~~V~sLa-~s-d--gkLl 930 (1074)
.-+. ..+|...-.. ..+...+ ...|+..+..-+.+..|.-..+|.-++.+....- -+.+..++ |+ + ..-+
T Consensus 608 ~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kLv~spls~kev~~~c~f~s~a~~d~l 687 (1096)
T KOG1897|consen 608 LYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGKLVYSPLSLKEVNHMCPFNSDAYPDSL 687 (1096)
T ss_pred EEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCcEEEeccchHHhhhhcccccccCCceE
Confidence 8664 4455432111 2222222 3457666665555555555556655533322111 11121121 11 1 1133
Q ss_pred EEECCCcEEEEEccCCceeeeccccccccCCCCCeEEEEEcCCceEEEEEec----------CC---CeEEEEECCCCCe
Q 001455 931 IGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSV----------EG---SNIKEWRRHRKPQ 997 (1074)
Q Consensus 931 aGs~DgsI~IwDl~tg~~~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S~----------dD---gtI~IWDl~t~~~ 997 (1074)
+.+..+.+.+.-+..-+...++ +. .-..+...+++++.....+..+. +. ..++++|.++.+.
T Consensus 688 ~~~~~~~l~i~tid~iqkl~ir----tv-pl~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~v 762 (1096)
T KOG1897|consen 688 ASANGGALTIGTIDEIQKLHIR----TV-PLGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEV 762 (1096)
T ss_pred EEecCCceEEEEecchhhccee----ee-cCCCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeE
Confidence 3344556666655442222211 11 11334445555553322222210 01 2467777766554
Q ss_pred EEEccCC-C---CCeEEEEEecC-CCEEEEEEC----------CCcEEEEECCCCcEEE---EEeCCCCeEEE-EEcCCE
Q 001455 998 ISIAPEK-G---TTIQAMAVVED-FIYLNYNSS----------ASSLQIWLRGTQQKVG---RISAGSKITSL-LTANDI 1058 (1074)
Q Consensus 998 i~~l~gH-~---~~VtsLafSPD-G~~LaSGS~----------DGtIrIWDl~tg~~l~---tL~~hs~VtsL-a~dg~~ 1058 (1074)
.....-. . ..|.+..|..| +.+++.|.. .|.|.||....+..+. .....+.|.++ .|+|++
T Consensus 763 l~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~fngkl 842 (1096)
T KOG1897|consen 763 LSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVEFNGKL 842 (1096)
T ss_pred EeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhhhCCeE
Confidence 3322111 1 14555568776 677777652 3778888766544433 33334567774 488888
Q ss_pred EEEEECCCcEEEEe
Q 001455 1059 VLCGTETGLIKGWI 1072 (1074)
Q Consensus 1059 LaSGs~DG~IrIWd 1072 (1074)
+|+-+ ..|++|+
T Consensus 843 lA~In--~~vrLye 854 (1096)
T KOG1897|consen 843 LAGIN--QSVRLYE 854 (1096)
T ss_pred EEecC--cEEEEEE
Confidence 77554 4677764
No 374
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.11 E-value=10 Score=42.53 Aligned_cols=259 Identities=13% Similarity=0.091 Sum_probs=134.5
Q ss_pred CCcEEEEEEe--CC--EEEEEECCCcEEEEECCCCCeeEEEEeccCCCCEEEEEEcCCCCE-EEEEeCCCe-EEEEEccC
Q 001455 794 SGAVTALIYY--KG--LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGES-LLSGSADKT-IGVWQMVQ 867 (1074)
Q Consensus 794 ~~~VtsLafS--~~--~LaSGs~DGtVrIWDl~t~~~~~i~tl~gH~~~VtsLafSpdg~~-LaSGS~DGt-IrIWDl~t 867 (1074)
..+|..-+|. ++ .+++.+.+|.+. ..+. ..-.+| .++|+|.... ++.+-.-|+ ..++|..+
T Consensus 34 ~qavfasaf~~~dgs~g~a~~~eaGk~v-~~~~-------lpaR~H-----gi~~~p~~~ravafARrPGtf~~vfD~~~ 100 (366)
T COG3490 34 AQAVFASAFDARDGSFGAATLSEAGKIV-FATA-------LPARGH-----GIAFHPALPRAVAFARRPGTFAMVFDPNG 100 (366)
T ss_pred CcchheeeeeccCCceeEEEEccCCcee-eeee-------cccccC-----CeecCCCCcceEEEEecCCceEEEECCCC
Confidence 3455555555 33 366666666652 1111 111233 4677776665 555555555 45788877
Q ss_pred CceEEEEEeccCCCe---EEEccCCCeEEEEecC-----CeEEEEeCCCceeeee---c-CCCeEEEEEe-CCEEEEEEC
Q 001455 868 RKLELIEVIATKEPI---RKLDTYGKTIFASTQG-----HRMKVIDSSRTLKDIY---R-SKGIKSMSVV-QGKIYIGCM 934 (1074)
Q Consensus 868 g~~~~~~~~~h~~~V---~s~s~dg~~L~sgS~D-----gtI~VWDl~~~l~~l~---~-~~~V~sLa~s-dgkLlaGs~ 934 (1074)
++...+......... -.|+++|.+++..-+| |.|-|||.+.....+- . .-+...+.+. ||+.+++..
T Consensus 101 ~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvan 180 (366)
T COG3490 101 AQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVAN 180 (366)
T ss_pred CcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeC
Confidence 664333222222222 2489999999987544 6899999884433322 1 2235566665 888554332
Q ss_pred C-------------------CcEEEEEccCCceeeecccccccc--CCCCCeEEEEEcCCceEEEEEecCCC----eEEE
Q 001455 935 D-------------------SSIQELAVSNNVEREIKAPFKSWR--LQSKPINSLVVYKDWLYSASSSVEGS----NIKE 989 (1074)
Q Consensus 935 D-------------------gsI~IwDl~tg~~~~i~~~~r~~~--~h~~~I~sL~~spd~i~las~S~dDg----tI~I 989 (1074)
. -++.+.|..+|..+.. ..+. .+...|..++..+++...+.+...+. --.+
T Consensus 181 GGIethpdfgR~~lNldsMePSlvlld~atG~liek----h~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLv 256 (366)
T COG3490 181 GGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEK----HTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLV 256 (366)
T ss_pred CceecccccCccccchhhcCccEEEEeccccchhhh----ccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcce
Confidence 2 2334444444443221 1111 23445677777777766555432211 0011
Q ss_pred EECCCCCeEEEcc-------CCCCCeEEEEEecCCCEEEEEE-CCCcEEEEECCCCcEEEEEeCCCCeEEEEEcCCEEEE
Q 001455 990 WRRHRKPQISIAP-------EKGTTIQAMAVVEDFIYLNYNS-SASSLQIWLRGTQQKVGRISAGSKITSLLTANDIVLC 1061 (1074)
Q Consensus 990 WDl~t~~~i~~l~-------gH~~~VtsLafSPDG~~LaSGS-~DGtIrIWDl~tg~~l~tL~~hs~VtsLa~dg~~LaS 1061 (1074)
=....++.+..+. .-...|-+++.+.+..+++..| ..+...+||..+|..+..-... .+..++....-++.
T Consensus 257 g~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l~-daaGva~~~~gf~v 335 (366)
T COG3490 257 GHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAALP-DAAGVAAAKGGFAV 335 (366)
T ss_pred eeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEeccccc-ccccceeccCceEE
Confidence 1111222222221 1224677888886666665555 5566789999999887543321 12334454444455
Q ss_pred EECCCcEEE
Q 001455 1062 GTETGLIKG 1070 (1074)
Q Consensus 1062 Gs~DG~IrI 1070 (1074)
.+.+|.|..
T Consensus 336 ssg~G~~~~ 344 (366)
T COG3490 336 SSGQGRIIF 344 (366)
T ss_pred ecCCceEEe
Confidence 555666653
No 375
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=94.02 E-value=11 Score=42.14 Aligned_cols=183 Identities=9% Similarity=0.006 Sum_probs=105.8
Q ss_pred EEEEEEcCCCCEEEEEeCCC--eEEEEEccCCceEEEEEeccCCCeEEEccCCCeEEEEe-cCCeEEEEeCCC--ceeee
Q 001455 839 VTSFSLFEPGESLLSGSADK--TIGVWQMVQRKLELIEVIATKEPIRKLDTYGKTIFAST-QGHRMKVIDSSR--TLKDI 913 (1074)
Q Consensus 839 VtsLafSpdg~~LaSGS~DG--tIrIWDl~tg~~~~~~~~~h~~~V~s~s~dg~~L~sgS-~DgtI~VWDl~~--~l~~l 913 (1074)
...+.|..+|..+-|.|.-| .|+.+|+.+|+.......+..----.+...++.++-.+ .++...+||... ....+
T Consensus 47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~~~~f~yd~~tl~~~~~~ 126 (264)
T PF05096_consen 47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWKEGTGFVYDPNTLKKIGTF 126 (264)
T ss_dssp EEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESSSSEEEEEETTTTEEEEEE
T ss_pred CccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEecCCeEEEEccccceEEEEE
Confidence 44678877888888888776 78999999998654433333222223555567777766 567899999873 33344
Q ss_pred ecCCCeEEEEEeCCEEEEEECCCcEEEEEccCCceeeeccccccccCCCCCeEEEEEcCCceEEEEEecCCCeEEEEECC
Q 001455 914 YRSKGIKSMSVVQGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRH 993 (1074)
Q Consensus 914 ~~~~~V~sLa~sdgkLlaGs~DgsI~IwDl~tg~~~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S~dDgtI~IWDl~ 993 (1074)
.-...=+.++..+..++.......++++|..+-+...... +..-...-..++.+.+..+.++.=.+. ...|...|..
T Consensus 127 ~y~~EGWGLt~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~-V~~~g~pv~~LNELE~i~G~IyANVW~--td~I~~Idp~ 203 (264)
T PF05096_consen 127 PYPGEGWGLTSDGKRLIMSDGSSRLYFLDPETFKEVRTIQ-VTDNGRPVSNLNELEYINGKIYANVWQ--TDRIVRIDPE 203 (264)
T ss_dssp E-SSS--EEEECSSCEEEE-SSSEEEEE-TTT-SEEEEEE--EETTEE---EEEEEEETTEEEEEETT--SSEEEEEETT
T ss_pred ecCCcceEEEcCCCEEEEECCccceEEECCcccceEEEEE-EEECCEECCCcEeEEEEcCEEEEEeCC--CCeEEEEeCC
Confidence 3344455666555567777778889999987744322110 110001123456677776655554443 3468888888
Q ss_pred CCCeEEEcc------------CC---CCCeEEEEEecCCCEEEEEE
Q 001455 994 RKPQISIAP------------EK---GTTIQAMAVVEDFIYLNYNS 1024 (1074)
Q Consensus 994 t~~~i~~l~------------gH---~~~VtsLafSPDG~~LaSGS 1024 (1074)
+|.+...+. .+ ..-.+.|++.|.+..+...|
T Consensus 204 tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 204 TGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp T-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred CCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 888766442 01 34578999998665544433
No 376
>PHA03098 kelch-like protein; Provisional
Probab=94.01 E-value=2.3 Score=52.18 Aligned_cols=188 Identities=6% Similarity=0.023 Sum_probs=91.3
Q ss_pred CCCEEEEEeCCC------eEEEEEccCCceEEEEEec-cCCCeEEEccCCCeEEEEecC-----CeEEEEeCCCce-eee
Q 001455 847 PGESLLSGSADK------TIGVWQMVQRKLELIEVIA-TKEPIRKLDTYGKTIFASTQG-----HRMKVIDSSRTL-KDI 913 (1074)
Q Consensus 847 dg~~LaSGS~DG------tIrIWDl~tg~~~~~~~~~-h~~~V~s~s~dg~~L~sgS~D-----gtI~VWDl~~~l-~~l 913 (1074)
++..++.||.++ .+..||..+++........ ..........++...+.|+.+ ..+..||..... ...
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~ 373 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREE 373 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCceeeC
Confidence 455556666442 4677888776643211111 111112233456666667654 246677766321 111
Q ss_pred ---ecCCCeEEEEEeCCEEEE-EECC------CcEEEEEccCCceeeeccccccccCCCCCeEEEEEcCCceEEEEEecC
Q 001455 914 ---YRSKGIKSMSVVQGKIYI-GCMD------SSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVE 983 (1074)
Q Consensus 914 ---~~~~~V~sLa~sdgkLla-Gs~D------gsI~IwDl~tg~~~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S~d 983 (1074)
.....-.+++..++++++ ||.+ +.+..||..+++....... . ....-.+.....+.++++++...
T Consensus 374 ~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~----p-~~r~~~~~~~~~~~iyv~GG~~~ 448 (534)
T PHA03098 374 PPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPL----P-ISHYGGCAIYHDGKIYVIGGISY 448 (534)
T ss_pred CCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCC----C-ccccCceEEEECCEEEEECCccC
Confidence 111112233334777665 5521 4588899888665433211 0 01112234455666666654321
Q ss_pred C------CeEEEEECCCCCeEEEccCCCCCeEEEEEecCCCEEEEEECC-----CcEEEEECCCCcE
Q 001455 984 G------SNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSA-----SSLQIWLRGTQQK 1039 (1074)
Q Consensus 984 D------gtI~IWDl~t~~~i~~l~gH~~~VtsLafSPDG~~LaSGS~D-----GtIrIWDl~tg~~ 1039 (1074)
. ..+..||..+++..............-...-+++.++.||.+ +.|.+||..+.+.
T Consensus 449 ~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W 515 (534)
T PHA03098 449 IDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIFNNKIYVVGGDKYEYYINEIEVYDDKTNTW 515 (534)
T ss_pred CCCCcccceEEEecCCCCceeeCCCCCcccccceEEEECCEEEEEcCCcCCcccceeEEEeCCCCEE
Confidence 1 237888987765433211111111111112267777777754 4688888777654
No 377
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=94.01 E-value=1.2 Score=53.29 Aligned_cols=131 Identities=12% Similarity=0.121 Sum_probs=74.2
Q ss_pred CcEEEEECCCCCeeEEEEeccCCCCEEEEEEcCCCCEEE-EEeCCCeEEE--EEccCCceEEEEEeccCCCeEEEccCCC
Q 001455 814 GSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLL-SGSADKTIGV--WQMVQRKLELIEVIATKEPIRKLDTYGK 890 (1074)
Q Consensus 814 GtVrIWDl~t~~~~~i~tl~gH~~~VtsLafSpdg~~La-SGS~DGtIrI--WDl~tg~~~~~~~~~h~~~V~s~s~dg~ 890 (1074)
..+.++|++++....+.++.++.. .-+|+|||+.|+ +...||...+ .|+.+++............-.+++|+|+
T Consensus 218 ~~i~~~~l~~g~~~~i~~~~g~~~---~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~ 294 (425)
T COG0823 218 PRIYYLDLNTGKRPVILNFNGNNG---APAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPRLTNGFGINTSPSWSPDGS 294 (425)
T ss_pred ceEEEEeccCCccceeeccCCccC---CccCCCCCCEEEEEECCCCCccEEEEcCCCCcceecccCCccccCccCCCCCC
Confidence 469999999987766667666654 457999999854 6666776555 5766665322111111112346899999
Q ss_pred eEEEEec-CC--eEEEEeCCCce-eeeecC-CCeEEEEEe-CCEEEE--EECCCc--EEEEEccCCc
Q 001455 891 TIFASTQ-GH--RMKVIDSSRTL-KDIYRS-KGIKSMSVV-QGKIYI--GCMDSS--IQELAVSNNV 947 (1074)
Q Consensus 891 ~L~sgS~-Dg--tI~VWDl~~~l-~~l~~~-~~V~sLa~s-dgkLla--Gs~Dgs--I~IwDl~tg~ 947 (1074)
.++..+. .| .|.++|.++.. ..+... ..-..-.++ +|+.++ +..+|. |.+.|+.++.
T Consensus 295 ~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~ 361 (425)
T COG0823 295 KIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGG 361 (425)
T ss_pred EEEEEeCCCCCcceEEECCCCCceeEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCC
Confidence 8887764 34 56666666332 222221 111133344 776433 322454 5555555543
No 378
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=94.01 E-value=0.56 Score=59.57 Aligned_cols=104 Identities=14% Similarity=0.193 Sum_probs=74.9
Q ss_pred CEEEEEECCCcEEEEEccCCceeeeccccccccCCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEccCCCC
Q 001455 927 GKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGT 1006 (1074)
Q Consensus 927 gkLlaGs~DgsI~IwDl~tg~~~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S~dDgtI~IWDl~t~~~i~~l~gH~~ 1006 (1074)
...+.|-.+..+..||.+-.....+....+.+ ..+....|++-..+|..+++. .+|.||+||.........+.+-+.
T Consensus 543 e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y-~~~~~Fs~~aTt~~G~iavgs--~~G~IRLyd~~g~~AKT~lp~lG~ 619 (794)
T PF08553_consen 543 EQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQY-SSKNNFSCFATTEDGYIAVGS--NKGDIRLYDRLGKRAKTALPGLGD 619 (794)
T ss_pred CceEEEECCCceEEeccCCCCCceeecccccc-ccCCCceEEEecCCceEEEEe--CCCcEEeecccchhhhhcCCCCCC
Confidence 34778889999999999864322222111222 235667888888888766644 589999999655555566777789
Q ss_pred CeEEEEEecCCCEEEEEECCCcEEEEEC
Q 001455 1007 TIQAMAVVEDFIYLNYNSSASSLQIWLR 1034 (1074)
Q Consensus 1007 ~VtsLafSPDG~~LaSGS~DGtIrIWDl 1034 (1074)
+|..|..+.||+||++.+ +..+-+++.
T Consensus 620 pI~~iDvt~DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 620 PIIGIDVTADGKWILATC-KTYLLLIDT 646 (794)
T ss_pred CeeEEEecCCCcEEEEee-cceEEEEEE
Confidence 999999999999998877 556777763
No 379
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=93.85 E-value=0.017 Score=69.29 Aligned_cols=154 Identities=15% Similarity=0.206 Sum_probs=98.5
Q ss_pred CCCCCcEEEEEEe--C-CEEEEEE----CCCcEEEEECCCC--CeeEEEEecc-CCCCEEEEEEcCCCCEEEEEeCCCeE
Q 001455 791 HKCSGAVTALIYY--K-GLLCSGF----SDGSIKMWDIKKQ--SAMLVWDVKE-HRKAVTSFSLFEPGESLLSGSADKTI 860 (1074)
Q Consensus 791 ~gH~~~VtsLafS--~-~~LaSGs----~DGtVrIWDl~t~--~~~~i~tl~g-H~~~VtsLafSpdg~~LaSGS~DGtI 860 (1074)
.+|..+.++++|+ + +.||+|- .|..+.|||+.++ .+.....|.+ -.....+++|-.+.+.+.+|...+.+
T Consensus 99 p~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~ 178 (783)
T KOG1008|consen 99 PGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSV 178 (783)
T ss_pred ccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccchh
Confidence 3688999999999 3 4677774 3678999999876 2221222222 34567789999888889999999999
Q ss_pred EEEEccCCceEEEEEeccCCCeEEEcc-CCCeEEEEecCCeEEEEeCC----CceeeeecC-----CCeEEEEEe---CC
Q 001455 861 GVWQMVQRKLELIEVIATKEPIRKLDT-YGKTIFASTQGHRMKVIDSS----RTLKDIYRS-----KGIKSMSVV---QG 927 (1074)
Q Consensus 861 rIWDl~tg~~~~~~~~~h~~~V~s~s~-dg~~L~sgS~DgtI~VWDl~----~~l~~l~~~-----~~V~sLa~s---dg 927 (1074)
.++|++.....+..+......-..++| .++++++-. ||.|.+||.. .....+.+. +.+..++|. .|
T Consensus 179 ~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtg 257 (783)
T KOG1008|consen 179 HIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTG 257 (783)
T ss_pred hhhhhhhhhhhhhhhhhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcc
Confidence 999998432111111110111123555 566776655 9999999943 222233222 247788884 56
Q ss_pred EEEE-EECCCcEEEEEccC
Q 001455 928 KIYI-GCMDSSIQELAVSN 945 (1074)
Q Consensus 928 kLla-Gs~DgsI~IwDl~t 945 (1074)
.+++ .-..++|+.+|+..
T Consensus 258 lla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 258 LLAVLSRDSITIRLYDICV 276 (783)
T ss_pred hhhhhccCcceEEEecccc
Confidence 6555 44567899999864
No 380
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=93.57 E-value=16 Score=41.34 Aligned_cols=152 Identities=11% Similarity=0.097 Sum_probs=97.3
Q ss_pred CCcEEEEEEeCCEEEEEECCCcEEEEECCCCCeeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEccCCceE-E
Q 001455 794 SGAVTALIYYKGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLE-L 872 (1074)
Q Consensus 794 ~~~VtsLafS~~~LaSGs~DGtVrIWDl~t~~~~~i~tl~gH~~~VtsLafSpdg~~LaSGS~DGtIrIWDl~tg~~~-~ 872 (1074)
.+-+..+.+++++...+..+.-++|.|+.+........+-.-.+--.++. -.|++...+..|.-..+.|+.+.+.. .
T Consensus 86 ~~l~~Dv~vse~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~--vsGn~aYVadlddgfLivdvsdpssP~l 163 (370)
T COG5276 86 RDLFADVRVSEEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVY--VSGNYAYVADLDDGFLIVDVSDPSSPQL 163 (370)
T ss_pred hhhhheeEecccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEE--ecCCEEEEeeccCcEEEEECCCCCCcee
Confidence 46677888888898888899999999999875432222212223334444 46888877776666778888764321 1
Q ss_pred E-EEeccCCCeEEEccCCCeEEEEecCCeEEEEeCCCc-eeee----ecCCCeEEEEEeCCEEEEEECCCcEEEEEccCC
Q 001455 873 I-EVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSSRT-LKDI----YRSKGIKSMSVVQGKIYIGCMDSSIQELAVSNN 946 (1074)
Q Consensus 873 ~-~~~~h~~~V~s~s~dg~~L~sgS~DgtI~VWDl~~~-l~~l----~~~~~V~sLa~sdgkLlaGs~DgsI~IwDl~tg 946 (1074)
. ........-..+.-.|++-+.+..|+.+.+.|+... ...+ .....+.++..++++.+..-.+.-+.+-|..+.
T Consensus 164 agrya~~~~d~~~v~ISGn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy~egvlivd~s~~ 243 (370)
T COG5276 164 AGRYALPGGDTHDVAISGNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVYDEGVLIVDVSGP 243 (370)
T ss_pred eeeeccCCCCceeEEEecCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEcccceEEEecCCC
Confidence 1 111111122344556888888889999999998832 1122 224478888888888666666666777777764
Q ss_pred c
Q 001455 947 V 947 (1074)
Q Consensus 947 ~ 947 (1074)
.
T Consensus 244 s 244 (370)
T COG5276 244 S 244 (370)
T ss_pred C
Confidence 4
No 381
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=93.54 E-value=0.085 Score=56.81 Aligned_cols=100 Identities=14% Similarity=0.060 Sum_probs=62.2
Q ss_pred EEEEeCCCeEEEEEccCCceEEEEEeccCCCeEEEccCCCeEEEEecCCeEEEEeCCCce---eeeecC-CCeEEEEEe-
Q 001455 851 LLSGSADKTIGVWQMVQRKLELIEVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSSRTL---KDIYRS-KGIKSMSVV- 925 (1074)
Q Consensus 851 LaSGS~DGtIrIWDl~tg~~~~~~~~~h~~~V~s~s~dg~~L~sgS~DgtI~VWDl~~~l---~~l~~~-~~V~sLa~s- 925 (1074)
+...+.||.|+-++++..+..+....-+... ..+...+..+++|+.+|.|.+|+.+..- ...... ..|.++...
T Consensus 33 l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~-~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~ 111 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKESCRSERFIDEG-QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNG 111 (238)
T ss_pred hccccCCcccccchhhhhhhhhhhhhhhhcc-eeecccCceEEeecccceEEEecCCccchHHHhhhcccccceeccccc
Confidence 5556778999988887654433322223322 4455567789999999999999987221 111222 223333322
Q ss_pred -CC-EEEEEECCCcEEEEEccCCceeee
Q 001455 926 -QG-KIYIGCMDSSIQELAVSNNVEREI 951 (1074)
Q Consensus 926 -dg-kLlaGs~DgsI~IwDl~tg~~~~i 951 (1074)
++ ...+++.||.|+.|++.-++...+
T Consensus 112 ~~~~~~c~~~~dg~ir~~n~~p~k~~g~ 139 (238)
T KOG2444|consen 112 RDSSLGCVGAQDGRIRACNIKPNKVLGY 139 (238)
T ss_pred cccceeEEeccCCceeeeccccCceeee
Confidence 22 355699999999999987665443
No 382
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.36 E-value=0.87 Score=54.29 Aligned_cols=136 Identities=17% Similarity=0.151 Sum_probs=92.8
Q ss_pred EEEEEECCCcEEEEECCCCCeeEEEEeccCCCCEEEEEEcCCCCE-------EEEEeCCCeEEEEEccCCce-EEEEEe-
Q 001455 806 LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGES-------LLSGSADKTIGVWQMVQRKL-ELIEVI- 876 (1074)
Q Consensus 806 ~LaSGs~DGtVrIWDl~t~~~~~i~tl~gH~~~VtsLafSpdg~~-------LaSGS~DGtIrIWDl~tg~~-~~~~~~- 876 (1074)
++.+|..-..++--|++.|+. +.+++-|.+ |+-+.+.|+++. -+.|-.|..|.-||.+-... ......
T Consensus 348 il~~~~~~~~l~klDIE~GKI--VeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~ 424 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKI--VEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQS 424 (644)
T ss_pred EeeCCCCcCcceeeeccccee--eeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeec
Confidence 355666667788888888854 666666666 788888887653 23466688899999874322 111111
Q ss_pred ---ccCCCeEEEc-cCCCeEEEEecCCeEEEEeCC-Cceeeeec--CCCeEEEEEe-CCEEEEEECCCcEEEEEcc
Q 001455 877 ---ATKEPIRKLD-TYGKTIFASTQGHRMKVIDSS-RTLKDIYR--SKGIKSMSVV-QGKIYIGCMDSSIQELAVS 944 (1074)
Q Consensus 877 ---~h~~~V~s~s-~dg~~L~sgS~DgtI~VWDl~-~~l~~l~~--~~~V~sLa~s-dgkLlaGs~DgsI~IwDl~ 944 (1074)
..+....|+. ....++++|+.+|.|++||-- ...++..+ +..|..+..+ +|+.+.|..+..+.+.++.
T Consensus 425 kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~tyLlLi~t~ 500 (644)
T KOG2395|consen 425 KQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATCKTYLLLIDTL 500 (644)
T ss_pred cccccccccceeeecCCceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEecccEEEEEEEe
Confidence 2333455664 445699999999999999954 33333333 5679999997 9998888888888888764
No 383
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=93.34 E-value=21 Score=42.14 Aligned_cols=235 Identities=13% Similarity=0.170 Sum_probs=120.8
Q ss_pred EEEEe--CCEEE-EEECCC----cEEEEECCCCCeeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCC-----------eE
Q 001455 799 ALIYY--KGLLC-SGFSDG----SIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADK-----------TI 860 (1074)
Q Consensus 799 sLafS--~~~La-SGs~DG----tVrIWDl~t~~~~~i~tl~gH~~~VtsLafSpdg~~LaSGS~DG-----------tI 860 (1074)
...++ +.++| +-+..| .++++|+.+++.. ...+... .-..+.|.++++.|+....|. .|
T Consensus 128 ~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l-~d~i~~~--~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v 204 (414)
T PF02897_consen 128 GFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFL-PDGIENP--KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQV 204 (414)
T ss_dssp EEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEE-EEEEEEE--ESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEE
T ss_pred eeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCc-CCccccc--ccceEEEeCCCCEEEEEEeCcccccccCCCCcEE
Confidence 45566 44555 334444 5999999998532 2222221 122399999998876554333 37
Q ss_pred EEEEccCCceEE-EEEeccCCCe--E--EEccCCCeEEEEecC----CeEEEEeCCC------ceeeeec-CCCeE-EEE
Q 001455 861 GVWQMVQRKLEL-IEVIATKEPI--R--KLDTYGKTIFASTQG----HRMKVIDSSR------TLKDIYR-SKGIK-SMS 923 (1074)
Q Consensus 861 rIWDl~tg~~~~-~~~~~h~~~V--~--s~s~dg~~L~sgS~D----gtI~VWDl~~------~l~~l~~-~~~V~-sLa 923 (1074)
+.|++.++.... .........+ . ..+.++++++..... ..+.+.|... ....+.. ...+. .+.
T Consensus 205 ~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~ 284 (414)
T PF02897_consen 205 YRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVD 284 (414)
T ss_dssp EEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEE
T ss_pred EEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEE
Confidence 888888765431 2222223232 2 357888877655422 3577778764 2333333 23333 333
Q ss_pred EeCCEEEEE----ECCCcEEEEEccCCceeeeccccccccCCC--CCeEEEEEcCCceEEEEEecCCCeEEEEECC-CCC
Q 001455 924 VVQGKIYIG----CMDSSIQELAVSNNVEREIKAPFKSWRLQS--KPINSLVVYKDWLYSASSSVEGSNIKEWRRH-RKP 996 (1074)
Q Consensus 924 ~sdgkLlaG----s~DgsI~IwDl~tg~~~~i~~~~r~~~~h~--~~I~sL~~spd~i~las~S~dDgtI~IWDl~-t~~ 996 (1074)
..++.++.- ..++.|...++......... ..+..+. ..+..+....+...+.........|++++.. +..
T Consensus 285 ~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~---~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~ 361 (414)
T PF02897_consen 285 HHGDRLYILTNDDAPNGRLVAVDLADPSPAEWW---TVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDGKE 361 (414)
T ss_dssp EETTEEEEEE-TT-TT-EEEEEETTSTSGGGEE---EEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-TEE
T ss_pred ccCCEEEEeeCCCCCCcEEEEecccccccccce---eEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCCcE
Confidence 446665542 33566777777764421000 0111222 3566666666665544433222378899988 444
Q ss_pred eEEEccCCCCCeEEEEEecCCCEEE--EEE--CCCcEEEEECCCCcE
Q 001455 997 QISIAPEKGTTIQAMAVVEDFIYLN--YNS--SASSLQIWLRGTQQK 1039 (1074)
Q Consensus 997 ~i~~l~gH~~~VtsLafSPDG~~La--SGS--~DGtIrIWDl~tg~~ 1039 (1074)
.........+.|..+...+++..+. ..| .-++++-||+.+++.
T Consensus 362 ~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~ 408 (414)
T PF02897_consen 362 SREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGEL 408 (414)
T ss_dssp EEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCE
T ss_pred EeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCE
Confidence 4443333344466665555554332 222 236788888888765
No 384
>PHA03098 kelch-like protein; Provisional
Probab=93.33 E-value=4.5 Score=49.68 Aligned_cols=186 Identities=13% Similarity=0.093 Sum_probs=89.7
Q ss_pred CCEEEEEECCC------cEEEEECCCCCeeEEEEeccCCCCEEEEEEcCCCCEEEEEeCC-----CeEEEEEccCCceEE
Q 001455 804 KGLLCSGFSDG------SIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSAD-----KTIGVWQMVQRKLEL 872 (1074)
Q Consensus 804 ~~~LaSGs~DG------tVrIWDl~t~~~~~i~tl~gH~~~VtsLafSpdg~~LaSGS~D-----GtIrIWDl~tg~~~~ 872 (1074)
+..++.||.++ .+..||..+.+......+.........+.+ ++...+.||.+ ..+..||..+++...
T Consensus 295 ~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~ 372 (534)
T PHA03098 295 NVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVF--NNRIYVIGGIYNSISLNTVESWKPGESKWRE 372 (534)
T ss_pred CEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEE--CCEEEEEeCCCCCEecceEEEEcCCCCceee
Confidence 44566666543 577888887765332222212222223332 56666777765 357788888776432
Q ss_pred EEEeccCC-CeEEEccCCCeEEEEecC------CeEEEEeCCCc-eeeee---cCCCeEEEEEeCCEEEE-EECC-----
Q 001455 873 IEVIATKE-PIRKLDTYGKTIFASTQG------HRMKVIDSSRT-LKDIY---RSKGIKSMSVVQGKIYI-GCMD----- 935 (1074)
Q Consensus 873 ~~~~~h~~-~V~s~s~dg~~L~sgS~D------gtI~VWDl~~~-l~~l~---~~~~V~sLa~sdgkLla-Gs~D----- 935 (1074)
........ .......++...+.|+.+ +.+..||+... ..... ....-.++...+++++. |+.+
T Consensus 373 ~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~ 452 (534)
T PHA03098 373 EPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGISYIDNI 452 (534)
T ss_pred CCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEECCEEEEECCccCCCCC
Confidence 21111111 111223445555556532 35788887632 11111 11112233444777655 5432
Q ss_pred ---CcEEEEEccCCceeeeccccccccCCCCCeEEEEEcCCceEEEEEecC---CCeEEEEECCCCC
Q 001455 936 ---SSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVE---GSNIKEWRRHRKP 996 (1074)
Q Consensus 936 ---gsI~IwDl~tg~~~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S~d---DgtI~IWDl~t~~ 996 (1074)
..+..||..+++....... . ....-.++....+.++++++... .+.+..||..++.
T Consensus 453 ~~~~~v~~yd~~~~~W~~~~~~----~-~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 453 KVYNIVESYNPVTNKWTELSSL----N-FPRINASLCIFNNKIYVVGGDKYEYYINEIEVYDDKTNT 514 (534)
T ss_pred cccceEEEecCCCCceeeCCCC----C-cccccceEEEECCEEEEEcCCcCCcccceeEEEeCCCCE
Confidence 2388899888765443211 0 01111223333555555543211 1367777776654
No 385
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.93 E-value=0.3 Score=62.08 Aligned_cols=98 Identities=10% Similarity=0.049 Sum_probs=67.9
Q ss_pred CceEEEEEecCCCeEEEEECCCCCe-EEEccCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCcEEEEEeCCC-CeE
Q 001455 973 DWLYSASSSVEGSNIKEWRRHRKPQ-ISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAGS-KIT 1050 (1074)
Q Consensus 973 d~i~las~S~dDgtI~IWDl~t~~~-i~~l~gH~~~VtsLafSPDG~~LaSGS~DGtIrIWDl~tg~~l~tL~~hs-~Vt 1050 (1074)
.+.+++.++ +.|.+...|..+.-. ...-..-.++|++++|+.||.+++.|-.+|.|.+||...++.++.+..|+ +++
T Consensus 98 ~~~~ivi~T-s~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t 176 (1206)
T KOG2079|consen 98 VVVPIVIGT-SHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVT 176 (1206)
T ss_pred eeeeEEEEc-CchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccc
Confidence 344444444 567777777654311 11122335689999999999999999999999999999999999888773 344
Q ss_pred E---EEEc--CCEEEEEECCCcEEEEec
Q 001455 1051 S---LLTA--NDIVLCGTETGLIKGWIP 1073 (1074)
Q Consensus 1051 s---La~d--g~~LaSGs~DG~IrIWdi 1073 (1074)
+ +-+. +..++++...|. +|+.
T Consensus 177 ~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 177 GVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred eEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 4 3333 336888888885 6653
No 386
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=92.88 E-value=25 Score=41.57 Aligned_cols=210 Identities=10% Similarity=0.141 Sum_probs=131.8
Q ss_pred EEEEe--CC-EEEEEECCCcEEEEECCCCCeeEEEEeccCCCCEEEEEEcCCCCEEEEEeC---CCeEEEEEccCCceEE
Q 001455 799 ALIYY--KG-LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSA---DKTIGVWQMVQRKLEL 872 (1074)
Q Consensus 799 sLafS--~~-~LaSGs~DGtVrIWDl~t~~~~~i~tl~gH~~~VtsLafSpdg~~LaSGS~---DGtIrIWDl~tg~~~~ 872 (1074)
.++++ +. ..++...++.|.+.|..+... ..... -......++|+|+++.++.+.. ++++.+.|..+++...
T Consensus 78 ~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~--~~~~~-vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~ 154 (381)
T COG3391 78 GVAVNPAGNKVYVTTGDSNTVSVIDTATNTV--LGSIP-VGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTA 154 (381)
T ss_pred ceeeCCCCCeEEEecCCCCeEEEEcCcccce--eeEee-eccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEE
Confidence 45555 33 455666678999999776643 22221 1225678999999988766554 6888888988887766
Q ss_pred EEEeccCCCeEEEccCCCeEEEEe-cCCeEEEEeCCCceee-------eecCCCeEEEEEe-CCE-EEEEE---CCCcEE
Q 001455 873 IEVIATKEPIRKLDTYGKTIFAST-QGHRMKVIDSSRTLKD-------IYRSKGIKSMSVV-QGK-IYIGC---MDSSIQ 939 (1074)
Q Consensus 873 ~~~~~h~~~V~s~s~dg~~L~sgS-~DgtI~VWDl~~~l~~-------l~~~~~V~sLa~s-dgk-LlaGs---~DgsI~ 939 (1074)
....+....-..++++|..++... .++.+.+.|....... ......-..+.+. +|. ++... .++.+.
T Consensus 155 ~~~vG~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~ 234 (381)
T COG3391 155 TIPVGNTPTGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVL 234 (381)
T ss_pred EEecCCCcceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEE
Confidence 533332223346889999777665 7789999997743222 1223334456664 554 44432 236888
Q ss_pred EEEccCCceeeeccccccccCCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEccCCCC---CeEEEEEecC
Q 001455 940 ELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGT---TIQAMAVVED 1016 (1074)
Q Consensus 940 IwDl~tg~~~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S~dDgtI~IWDl~t~~~i~~l~gH~~---~VtsLafSPD 1016 (1074)
..|..++.......+. ... ....+..+|++.+........+.+.+.|..+............ .+..+++.+.
T Consensus 235 ~id~~~~~v~~~~~~~----~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 309 (381)
T COG3391 235 KIDTATGNVTATDLPV----GSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISPL 309 (381)
T ss_pred EEeCCCceEEEecccc----ccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecccccccccceeccceee
Confidence 8898886654331111 112 4556788899988877765567899999888776665433322 3555665553
No 387
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=92.86 E-value=1.6 Score=50.11 Aligned_cols=187 Identities=19% Similarity=0.152 Sum_probs=149.9
Q ss_pred hhhHHHHHHHHhhccccccchhhhhhhcchhhHhHHHHHHhcCChHHHHHHHHHHHhhhhccCcchhHHHhhcCCcchhh
Q 001455 405 PAASLMIIEVLVTAFDYATNNMHLAAINSPRVLCGLLDVARHQNLEELISLATILVKCIQFDGQCRKYLSEFTAVAPLAC 484 (1074)
Q Consensus 405 ~~aa~~~l~~ll~~~d~~~~~~~~~~~~s~~~l~~l~~~~~~~~~~e~~~~~~il~~C~~~dg~cr~~ia~~~~~~~~~~ 484 (1074)
+..|+.-|+.++...| |+.-+.+.||+.-++..+++.+.+=|..||.++-.|+|-.--|-..+-+.--+.+++.
T Consensus 100 ke~ald~Le~lve~iD------nAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~ 173 (342)
T KOG2160|consen 100 KEDALDNLEELVEDID------NANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLK 173 (342)
T ss_pred HHHHHHHHHHHHHhhh------hHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHH
Confidence 5788888888877664 8999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcC-CchhHHHHHHHHHHHhccCchhhHHHHHHhhccCchhHHHHHHHHhhcccchhhHHH-HHHHhhhccccCCCCC
Q 001455 485 LLQSG-EKRAIMIALEFFHEILRIPRSSAIDLLQRIHKEGNINILHILKLSLQQLQSDYQLLA-ANLLLQLDTLENTTGK 562 (1074)
Q Consensus 485 ll~~~-~~~~~~~a~~~l~ell~l~r~~~~~~l~~~~~~~~~~~mh~ll~~lq~~~~~~~~~~-a~lllqldll~~p~~~ 562 (1074)
.|-+. ...+|..|+.=++-|++-+---..+|++. + ---.|.-.||+-..+.+.-+ |..|++.=+..++...
T Consensus 174 ~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~----~---G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~ 246 (342)
T KOG2160|consen 174 ILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKL----N---GYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDE 246 (342)
T ss_pred HHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhc----C---CHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhh
Confidence 88766 67788999999999998887545555432 1 13445556666445555444 3444444444567777
Q ss_pred CcchHHHHHHHHHHHhccCChhhHHHHHHHHHhcCccccccC
Q 001455 563 SVFTEEAMQVILKAVASEESSTMQLLSSFILSNIGGTFSWTG 604 (1074)
Q Consensus 563 s~yreea~~~~~~~l~~~~~~~~q~~~~~~l~~l~g~fs~sG 604 (1074)
.+..++-..-.++.+..+....+++.+-.+++.+-=.|+..+
T Consensus 247 d~~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~~~~~~ 288 (342)
T KOG2160|consen 247 DIASSLGFQRVLENLISSLDFEVNEAALTALLSLLSELSTRK 288 (342)
T ss_pred hHHHHhhhhHHHHHHhhccchhhhHHHHHHHHHHHHHHhhcc
Confidence 799999999999999999888889999999999888888777
No 388
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=92.77 E-value=10 Score=46.80 Aligned_cols=193 Identities=10% Similarity=0.022 Sum_probs=108.2
Q ss_pred CCEEEEEeCCCeEEEEEccCCceEEEEEeccCCCeE----------EEccCCCeEEEEecCCeEEEEeCC-Cceeeeec-
Q 001455 848 GESLLSGSADKTIGVWQMVQRKLELIEVIATKEPIR----------KLDTYGKTIFASTQGHRMKVIDSS-RTLKDIYR- 915 (1074)
Q Consensus 848 g~~LaSGS~DGtIrIWDl~tg~~~~~~~~~h~~~V~----------s~s~dg~~L~sgS~DgtI~VWDl~-~~l~~l~~- 915 (1074)
+..++.++.++.|.-.|..+|+............+. .....+..++.++.|+.+.-.|.. +...-...
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~dg~l~ALDa~TGk~~W~~~~ 148 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTLDARLVALDAKTGKVVWSKKN 148 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcCCCEEEEEECCCCCEEeeccc
Confidence 456777777888999999999876554332211111 122345678888889999888876 22211111
Q ss_pred --C---CCeE-EEEEeCCEEEEEEC------CCcEEEEEccCCceeeecccc--------------------ccccCC--
Q 001455 916 --S---KGIK-SMSVVQGKIYIGCM------DSSIQELAVSNNVEREIKAPF--------------------KSWRLQ-- 961 (1074)
Q Consensus 916 --~---~~V~-sLa~sdgkLlaGs~------DgsI~IwDl~tg~~~~i~~~~--------------------r~~~~h-- 961 (1074)
. ..+. .-.+.++.++.+.. +|.|+-+|..+|+..-..... ..|.+.
T Consensus 149 ~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~ 228 (527)
T TIGR03075 149 GDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGDAW 228 (527)
T ss_pred ccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCCCcc
Confidence 0 1121 11223778777643 689999999998864322111 011110
Q ss_pred ---C-CCeEEEEEcCC--ceEEEEEec---------CC----CeEEEEECCCCCeEEEccCCCCCeEE---------EEE
Q 001455 962 ---S-KPINSLVVYKD--WLYSASSSV---------EG----SNIKEWRRHRKPQISIAPEKGTTIQA---------MAV 1013 (1074)
Q Consensus 962 ---~-~~I~sL~~spd--~i~las~S~---------dD----gtI~IWDl~t~~~i~~l~gH~~~Vts---------Laf 1013 (1074)
+ ..-..+.+.+. -+|+.++.+ .| ..|.-.|.++|+..-.+......++. +.+
T Consensus 229 ~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~ 308 (527)
T TIGR03075 229 KTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDL 308 (527)
T ss_pred ccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEe
Confidence 1 11112344432 334433220 11 16777788888865444332221221 222
Q ss_pred ecCCC---EEEEEECCCcEEEEECCCCcEE
Q 001455 1014 VEDFI---YLNYNSSASSLQIWLRGTQQKV 1040 (1074)
Q Consensus 1014 SPDG~---~LaSGS~DGtIrIWDl~tg~~l 1040 (1074)
..+|+ .++.+..+|.+++.|..+|+.+
T Consensus 309 ~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 309 KKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred ccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 24776 7889999999999999999986
No 389
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=92.26 E-value=1.1 Score=56.49 Aligned_cols=301 Identities=18% Similarity=0.194 Sum_probs=189.9
Q ss_pred cccchhhhhhhcchhhHhHHHHHHhcCChHHHHHHHHHHHhhhhccCcchhHHHhhcCCcchhhhhhcCCchhHHHHHHH
Q 001455 421 YATNNMHLAAINSPRVLCGLLDVARHQNLEELISLATILVKCIQFDGQCRKYLSEFTAVAPLACLLQSGEKRAIMIALEF 500 (1074)
Q Consensus 421 ~~~~~~~~~~~~s~~~l~~l~~~~~~~~~~e~~~~~~il~~C~~~dg~cr~~ia~~~~~~~~~~ll~~~~~~~~~~a~~~ 500 (1074)
-++|...-..+.-.+++..|+..++.++.|-.+.++..|-+.--.. .|++-+++.--.++++++|.++.....-.|+++
T Consensus 276 LAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~-ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrl 354 (708)
T PF05804_consen 276 LAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFK-ENKDEMAESGIVEKLLKLLPSENEDLVNVALRL 354 (708)
T ss_pred HhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH-HHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHH
Confidence 3455555555667889999999999999988888888887554333 379999999999999999999998888899999
Q ss_pred HHHHhccCchhhHHHHHHhhccCchhHHHHHHHHhhcccchhhHHHHHHHhhhccccCCCCCCcchHHHHHHHHHHHhcc
Q 001455 501 FHEILRIPRSSAIDLLQRIHKEGNINILHILKLSLQQLQSDYQLLAANLLLQLDTLENTTGKSVFTEEAMQVILKAVASE 580 (1074)
Q Consensus 501 l~ell~l~r~~~~~~l~~~~~~~~~~~mh~ll~~lq~~~~~~~~~~a~lllqldll~~p~~~s~yreea~~~~~~~l~~~ 580 (1074)
|.-|=--+ .+-..+-+.|.+..+--|| + .+..+.++-.+|.||=.-++.+.+=.|. +++..|++.|-..
T Consensus 355 L~NLSfd~-----~~R~~mV~~GlIPkLv~LL---~--d~~~~~val~iLy~LS~dd~~r~~f~~T-dcIp~L~~~Ll~~ 423 (708)
T PF05804_consen 355 LFNLSFDP-----ELRSQMVSLGLIPKLVELL---K--DPNFREVALKILYNLSMDDEARSMFAYT-DCIPQLMQMLLEN 423 (708)
T ss_pred HHHhCcCH-----HHHHHHHHCCCcHHHHHHh---C--CCchHHHHHHHHHHhccCHhhHHHHhhc-chHHHHHHHHHhC
Confidence 98774433 3445677778888777666 2 3567778888999998877777777777 4999999998887
Q ss_pred CChhhHHHHHHHHHhcCccccccCchhh----HHHHHHHhCCC--cchhhhhhccCCcccchhhhhchhhhhHHHHHHHH
Q 001455 581 ESSTMQLLSSFILSNIGGTFSWTGEPYT----VAWLVKKAGLN--SSWLQNMIRNFDWLDQSLQDRGVDSWSSKIAKSII 654 (1074)
Q Consensus 581 ~~~~~q~~~~~~l~~l~g~fs~sG~~~~----~~~llk~ag~~--~~~~~~~~~~~~~~d~~~~e~~~~~w~~~~a~~l~ 654 (1074)
.+..+|....-.+.||.=.=-.. +... -.-|+++| +. ++.-..++||+...++..+. ...+|-..++..+-
T Consensus 424 ~~~~v~~eliaL~iNLa~~~rna-qlm~~g~gL~~L~~ra-~~~~D~lLlKlIRNiS~h~~~~k~-~f~~~i~~L~~~v~ 500 (708)
T PF05804_consen 424 SEEEVQLELIALLINLALNKRNA-QLMCEGNGLQSLMKRA-LKTRDPLLLKLIRNISQHDGPLKE-LFVDFIGDLAKIVS 500 (708)
T ss_pred CCccccHHHHHHHHHHhcCHHHH-HHHHhcCcHHHHHHHH-HhcccHHHHHHHHHHHhcCchHHH-HHHHHHHHHHHHhh
Confidence 66666765555555543211100 1111 13445554 33 22233577888766655444 45679999988754
Q ss_pred hcCc-h-hHHHHHhhhhcCCccccccc----chhhHhhhccccCC--CcchhhhH------------------HHHHHHh
Q 001455 655 EIGK-P-IYYALEKGLKSKTKSVCRDS----LTTIAWLSFEVSKS--PNSVRHSA------------------CQILLDG 708 (1074)
Q Consensus 655 ~~~~-~-~l~aLs~~l~s~~~~L~~~c----L~~~~WL~~~Ls~l--pd~l~~~A------------------r~~LL~e 708 (1074)
.... . .+|+|.=.=.-..+++-..- .--+-||...|.+. +|++...+ ...+.+.
T Consensus 501 ~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d~~~A~lL~~sgli~~ 580 (708)
T PF05804_consen 501 SGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASDPECAPLLAKSGLIPT 580 (708)
T ss_pred cCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCCHHHHHHHHhCChHHH
Confidence 4322 2 33444321112223321111 22356777777553 22332211 1123555
Q ss_pred HHhhcCCCchhhhhHhhhh-cccccccCc
Q 001455 709 VEQFLHPGLELEERLLACL-CIYNYASGK 736 (1074)
Q Consensus 709 L~~~L~~s~~LeERvLasL-SL~nfs~d~ 736 (1074)
+.+.+.....-.|-++..+ ++|.+..++
T Consensus 581 Li~LL~~kqeDdE~VlQil~~f~~ll~h~ 609 (708)
T PF05804_consen 581 LIELLNAKQEDDEIVLQILYVFYQLLFHE 609 (708)
T ss_pred HHHHHHhhCchHHHHHHHHHHHHHHHcCh
Confidence 6666655555566666643 566666555
No 390
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=91.72 E-value=21 Score=41.08 Aligned_cols=211 Identities=12% Similarity=0.095 Sum_probs=108.3
Q ss_pred EEEEEECCCcEEEEECCCCCeeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEccCCceEEEE-EeccCCCeE-
Q 001455 806 LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIE-VIATKEPIR- 883 (1074)
Q Consensus 806 ~LaSGs~DGtVrIWDl~t~~~~~i~tl~gH~~~VtsLafSpdg~~LaSGS~DGtIrIWDl~tg~~~~~~-~~~h~~~V~- 883 (1074)
++.+--..+.|.-|+..+++. ..+ .+.+.+.++..-..+..|+++. . .+.+++..++...... ......+..
T Consensus 39 L~w~DI~~~~i~r~~~~~g~~---~~~-~~p~~~~~~~~~d~~g~Lv~~~-~-g~~~~~~~~~~~~t~~~~~~~~~~~~r 112 (307)
T COG3386 39 LLWVDILGGRIHRLDPETGKK---RVF-PSPGGFSSGALIDAGGRLIACE-H-GVRLLDPDTGGKITLLAEPEDGLPLNR 112 (307)
T ss_pred EEEEeCCCCeEEEecCCcCce---EEE-ECCCCcccceeecCCCeEEEEc-c-ccEEEeccCCceeEEeccccCCCCcCC
Confidence 355566677888888876642 222 2344455555555555566554 3 3567787666542111 111111111
Q ss_pred ----EEccCCCeEEEEec-----------CCeEEEEeCCCceeeeecC--CCeEEEEEe-CCE-EEE-EECCCcEEEEEc
Q 001455 884 ----KLDTYGKTIFASTQ-----------GHRMKVIDSSRTLKDIYRS--KGIKSMSVV-QGK-IYI-GCMDSSIQELAV 943 (1074)
Q Consensus 884 ----s~s~dg~~L~sgS~-----------DgtI~VWDl~~~l~~l~~~--~~V~sLa~s-dgk-Lla-Gs~DgsI~IwDl 943 (1074)
.+.++|.+.++... -|.++.+|..+....+... ..-+.++|+ |++ ++. =+..+.|+-|++
T Consensus 113 ~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~ 192 (307)
T COG3386 113 PNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDL 192 (307)
T ss_pred CCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEec
Confidence 24566554443323 1235555543333332222 234578887 775 444 444578888877
Q ss_pred cC--CceeeeccccccccCCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEccCCCCCeEEEEEe-cCCCEE
Q 001455 944 SN--NVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVV-EDFIYL 1020 (1074)
Q Consensus 944 ~t--g~~~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S~dDgtI~IWDl~t~~~i~~l~gH~~~VtsLafS-PDG~~L 1020 (1074)
.. +..... .............-.++...++.+-++....++.|..|+.+ ++.+..+.-+...+++++|- |+.+.|
T Consensus 193 d~~~g~~~~~-~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~L 270 (307)
T COG3386 193 DPATGPIGGR-RGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDLNTL 270 (307)
T ss_pred CcccCccCCc-ceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEeCCCcCEE
Confidence 63 111000 00001111223334455555554443333233489999998 77777777676778888885 555655
Q ss_pred EEEE
Q 001455 1021 NYNS 1024 (1074)
Q Consensus 1021 aSGS 1024 (1074)
...+
T Consensus 271 ~iTs 274 (307)
T COG3386 271 YITS 274 (307)
T ss_pred EEEe
Confidence 4444
No 391
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=91.68 E-value=6 Score=52.03 Aligned_cols=249 Identities=16% Similarity=0.131 Sum_probs=128.8
Q ss_pred HHHHHHHHHhcCcchhhhhhhHHhhHhhhhcc--hhhhhhhhhcCCCchHHHH-HHhh---cchhhHHHHHhcCCChhhh
Q 001455 301 ILEQLLTAISASKEETVIRASVSILTTIILAN--ESVIEDIKKKGLRLSDLAT-ALKR---NVPEAAILIYLIKPSPTEI 374 (1074)
Q Consensus 301 ~i~~~~e~~~~s~~~~v~~~~v~il~~~~~~~--~~~~~~~~~~~~~~~~~~~-~lk~---~~~~a~vl~~l~~~~~~~~ 374 (1074)
-++.|++.| .+.++.|-+++|..|..+...+ +..++-+.+.|+++.-.+. .|.. ..+.+.+|+-+|+..-. .
T Consensus 622 ~~~~L~~~L-~D~d~~VR~~Av~~L~~~~~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~~d~-~ 699 (897)
T PRK13800 622 SVAELAPYL-ADPDPGVRRTAVAVLTETTPPGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPPAPALRDHLGSPDP-V 699 (897)
T ss_pred hHHHHHHHh-cCCCHHHHHHHHHHHhhhcchhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCchHHHHHHhcCCCH-H
Confidence 346777766 6899999999999998875322 1222333333333333222 2322 12222334444433111 1
Q ss_pred hhccchhHHHHHHhccccccCcccccccCchhhHHHHHHHHhhccccccchhhhhhhcchhhHhHHHHHHhcCChHHHHH
Q 001455 375 KTLELLPTLVEVICTSKLYKGKLESVRLTPPAASLMIIEVLVTAFDYATNNMHLAAINSPRVLCGLLDVARHQNLEELIS 454 (1074)
Q Consensus 375 ~~~~~~~~l~~v~~~~~~~~~~~~~~~~~p~~aa~~~l~~ll~~~d~~~~~~~~~~~~s~~~l~~l~~~~~~~~~~e~~~ 454 (1074)
.. ..+++.|..-+ +.. ...+++ .|..-|..-...-+.+|..++....|+..++..+.+-|.+
T Consensus 700 VR----~~A~~aL~~~~------------~~~-~~~l~~-~L~D~d~~VR~~Av~aL~~~~~~~~l~~~l~D~~~~VR~~ 761 (897)
T PRK13800 700 VR----AAALDVLRALR------------AGD-AALFAA-ALGDPDHRVRIEAVRALVSVDDVESVAGAATDENREVRIA 761 (897)
T ss_pred HH----HHHHHHHHhhc------------cCC-HHHHHH-HhcCCCHHHHHHHHHHHhcccCcHHHHHHhcCCCHHHHHH
Confidence 11 11222222100 000 011222 2221222111223444444444556777778888888888
Q ss_pred HHHHHHhhhhccCcchhHHHhhc--CCcchhhhhhcCCchhHHHHHHHHHHHhccC-----------------chhhHHH
Q 001455 455 LATILVKCIQFDGQCRKYLSEFT--AVAPLACLLQSGEKRAIMIALEFFHEILRIP-----------------RSSAIDL 515 (1074)
Q Consensus 455 ~~~il~~C~~~dg~cr~~ia~~~--~~~~~~~ll~~~~~~~~~~a~~~l~ell~l~-----------------r~~~~~~ 515 (1074)
++.-|-. +...- ....++++++..+...|..|+.-|.++=.-. |..+.+-
T Consensus 762 aa~aL~~-----------~~~~~~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~a 830 (897)
T PRK13800 762 VAKGLAT-----------LGAGGAPAGDAVRALTGDPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARA 830 (897)
T ss_pred HHHHHHH-----------hccccchhHHHHHHHhcCCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHH
Confidence 8887751 11111 1356777888888888888888886653211 1223333
Q ss_pred HHHhhccCchhHHHHHHHHhhcccchhhHHHHHHHhhhccccCCCCCCcchHHHHHHHHHHHhccCChhhHHHHHHHHH
Q 001455 516 LQRIHKEGNINILHILKLSLQQLQSDYQLLAANLLLQLDTLENTTGKSVFTEEAMQVILKAVASEESSTMQLLSSFILS 594 (1074)
Q Consensus 516 l~~~~~~~~~~~mh~ll~~lq~~~~~~~~~~a~lllqldll~~p~~~s~yreea~~~~~~~l~~~~~~~~q~~~~~~l~ 594 (1074)
|..+ |+-..+-.|+-.|+...+.=|--+|.-|-++.. -++|+++|..+|+ .++..|+..|++||-
T Consensus 831 L~~l---~~~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~~----------~~~a~~~L~~al~-D~d~~Vr~~A~~aL~ 895 (897)
T PRK13800 831 LAGA---AADVAVPALVEALTDPHLDVRKAAVLALTRWPG----------DPAARDALTTALT-DSDADVRAYARRALA 895 (897)
T ss_pred HHhc---cccchHHHHHHHhcCCCHHHHHHHHHHHhccCC----------CHHHHHHHHHHHh-CCCHHHHHHHHHHHh
Confidence 3333 233345666666666666656556655545311 1467888887777 447778888888873
No 392
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=91.54 E-value=35 Score=40.32 Aligned_cols=215 Identities=9% Similarity=0.063 Sum_probs=100.3
Q ss_pred EEcCCCCEEE-EEeCCC--eEEEEEccCCceEEEEEeccCCC-eEEEccCCCeEEEEecCCeEEEEeCCC-ceeeeec--
Q 001455 843 SLFEPGESLL-SGSADK--TIGVWQMVQRKLELIEVIATKEP-IRKLDTYGKTIFASTQGHRMKVIDSSR-TLKDIYR-- 915 (1074)
Q Consensus 843 afSpdg~~La-SGS~DG--tIrIWDl~tg~~~~~~~~~h~~~-V~s~s~dg~~L~sgS~DgtI~VWDl~~-~l~~l~~-- 915 (1074)
+|.++|+.|+ ++..|| .+.+.|+.+++............ -..+++.++.++....+..+.-.|+.. ....+..
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p 121 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVP 121 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECC
Confidence 5678898755 444455 45666888887544333222222 245678888877776667888888873 2223322
Q ss_pred CCCeEEEEEe---CCEEEEEEC-----------------------CCcEEEEEccCCceeeeccccccccCCCCCeEEEE
Q 001455 916 SKGIKSMSVV---QGKIYIGCM-----------------------DSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLV 969 (1074)
Q Consensus 916 ~~~V~sLa~s---dgkLlaGs~-----------------------DgsI~IwDl~tg~~~~i~~~~r~~~~h~~~I~sL~ 969 (1074)
...+-...+. ++..++|.. ...|...|+.+|+...+. .....+..+.
T Consensus 122 ~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~-------~~~~wlgH~~ 194 (386)
T PF14583_consen 122 DDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVF-------EDTDWLGHVQ 194 (386)
T ss_dssp TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEE-------EESS-EEEEE
T ss_pred cccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEE-------ecCccccCcc
Confidence 2223233342 555555432 345666677777665543 2256677888
Q ss_pred EcCCceEEEEEecCC---C-eEEEEECCC-CCeEEEccCCC--CCeEEEEEecCCCEEEEEE-----CCCcEEEEECCCC
Q 001455 970 VYKDWLYSASSSVEG---S-NIKEWRRHR-KPQISIAPEKG--TTIQAMAVVEDFIYLNYNS-----SASSLQIWLRGTQ 1037 (1074)
Q Consensus 970 ~spd~i~las~S~dD---g-tI~IWDl~t-~~~i~~l~gH~--~~VtsLafSPDG~~LaSGS-----~DGtIrIWDl~tg 1037 (1074)
++|....++.++-++ . .-+||-+++ +...+.+..+. ..+..=-|.|||..|.--+ .+..|.-+|..++
T Consensus 195 fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~ 274 (386)
T PF14583_consen 195 FSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTG 274 (386)
T ss_dssp EETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT-
T ss_pred cCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCC
Confidence 998877777665332 2 235665432 22233333332 2445556899998776532 2445666788887
Q ss_pred cEEEEEeCCCCeEE--EEEcCCEEEEEECC
Q 001455 1038 QKVGRISAGSKITS--LLTANDIVLCGTET 1065 (1074)
Q Consensus 1038 ~~l~tL~~hs~Vts--La~dg~~LaSGs~D 1065 (1074)
+........ +... .+++|+.++-=|.|
T Consensus 275 ~~~~~~~~p-~~~H~~ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 275 ERRRLMEMP-WCSHFMSSPDGKLFVGDGGD 303 (386)
T ss_dssp -EEEEEEE--SEEEEEE-TTSSEEEEEE--
T ss_pred CceEEEeCC-ceeeeEEcCCCCEEEecCCC
Confidence 664333322 2111 22456666554443
No 393
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=91.44 E-value=23 Score=38.88 Aligned_cols=204 Identities=16% Similarity=0.211 Sum_probs=105.5
Q ss_pred CEEEEEECCCcEEEEECCCCCeeEEEEeccCCCCEEEEEEcC-CCC--EEEEEeCCCeEEEEEccCCceEEEE----Eec
Q 001455 805 GLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFE-PGE--SLLSGSADKTIGVWQMVQRKLELIE----VIA 877 (1074)
Q Consensus 805 ~~LaSGs~DGtVrIWDl~t~~~~~i~tl~gH~~~VtsLafSp-dg~--~LaSGS~DGtIrIWDl~tg~~~~~~----~~~ 877 (1074)
.++..--..|.|.-||+.+.+.. ..++.+. ++.++.+-- ++. +.+.++..-.|.-||.......... +..
T Consensus 28 sLl~VDi~ag~v~r~D~~qn~v~-ra~ie~p--~~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~ 104 (310)
T KOG4499|consen 28 SLLYVDIEAGEVHRYDIEQNKVY-RAKIEGP--PSAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQP 104 (310)
T ss_pred eEEEEEeccCceehhhhhhhheE-EEEEecC--cceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccccCc
Confidence 34455555667777999876532 2333332 234444432 222 2334443334445774322111111 010
Q ss_pred c--CCCeE--EEccCCCeEEEEe----------cCCeEEEEeCCCceeeeecCCCe-EEEEEe-CCE--EEEEECCCcEE
Q 001455 878 T--KEPIR--KLDTYGKTIFAST----------QGHRMKVIDSSRTLKDIYRSKGI-KSMSVV-QGK--IYIGCMDSSIQ 939 (1074)
Q Consensus 878 h--~~~V~--s~s~dg~~L~sgS----------~DgtI~VWDl~~~l~~l~~~~~V-~sLa~s-dgk--LlaGs~DgsI~ 939 (1074)
. +.... .++|+|++ +.|. ..|.++.|-....+..+...-.| ..++|+ +.+ .+.-+.+..|.
T Consensus 105 d~kknR~NDgkvdP~Gry-y~GtMad~~~~le~~~g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~ 183 (310)
T KOG4499|consen 105 DRKKNRLNDGKVDPDGRY-YGGTMADFGDDLEPIGGELYSWLAGHQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVD 183 (310)
T ss_pred hHHhcccccCccCCCCce-eeeeeccccccccccccEEEEeccCCCceeeehhccCCccccccccCcEEEEEccCceEEe
Confidence 0 11111 26788887 3332 23456667666555555543332 366776 444 34466777887
Q ss_pred EEE--ccCCceee---eccccccccCCCCCeEEEEEc-CCceEEEEEecCCCeEEEEECCCCCeEEEccCCCCCeEEEEE
Q 001455 940 ELA--VSNNVERE---IKAPFKSWRLQSKPINSLVVY-KDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAV 1013 (1074)
Q Consensus 940 IwD--l~tg~~~~---i~~~~r~~~~h~~~I~sL~~s-pd~i~las~S~dDgtI~IWDl~t~~~i~~l~gH~~~VtsLaf 1013 (1074)
-|| ..+|.... ++..-+.-.......-.+++. ....++++++ +++|...|..+|+.+..+.-....|++++|
T Consensus 184 a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~n--g~~V~~~dp~tGK~L~eiklPt~qitsccF 261 (310)
T KOG4499|consen 184 AYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFN--GGTVQKVDPTTGKILLEIKLPTPQITSCCF 261 (310)
T ss_pred eeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEec--CcEEEEECCCCCcEEEEEEcCCCceEEEEe
Confidence 777 55554321 110000000001111122223 3445667665 889999999999999988888899999999
Q ss_pred e
Q 001455 1014 V 1014 (1074)
Q Consensus 1014 S 1014 (1074)
-
T Consensus 262 g 262 (310)
T KOG4499|consen 262 G 262 (310)
T ss_pred c
Confidence 6
No 394
>PHA02790 Kelch-like protein; Provisional
Probab=90.78 E-value=10 Score=46.17 Aligned_cols=181 Identities=9% Similarity=0.009 Sum_probs=85.6
Q ss_pred CCEEEEEeCC-----CeEEEEEccCCceEEEEEecc-CCCeEEEccCCCeEEEEecC--CeEEEEeCCCc-eeeeec-CC
Q 001455 848 GESLLSGSAD-----KTIGVWQMVQRKLELIEVIAT-KEPIRKLDTYGKTIFASTQG--HRMKVIDSSRT-LKDIYR-SK 917 (1074)
Q Consensus 848 g~~LaSGS~D-----GtIrIWDl~tg~~~~~~~~~h-~~~V~s~s~dg~~L~sgS~D--gtI~VWDl~~~-l~~l~~-~~ 917 (1074)
+..++.||.+ .++..||..++.......... .........++...+.|+.+ ..+..||.... ...... ..
T Consensus 272 ~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~ 351 (480)
T PHA02790 272 EVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLK 351 (480)
T ss_pred CEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCCCCceEEEECCCCeEEECCCCCC
Confidence 3334555543 246678877765432111111 11111233455555666643 35777886522 111111 11
Q ss_pred C--eEEEEEeCCEEEE-EECC---CcEEEEEccCCceeeeccccccccCCCCCeEEEEEcCCceEEEEEecCCCeEEEEE
Q 001455 918 G--IKSMSVVQGKIYI-GCMD---SSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWR 991 (1074)
Q Consensus 918 ~--V~sLa~sdgkLla-Gs~D---gsI~IwDl~tg~~~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S~dDgtI~IWD 991 (1074)
. -.+++.-+|++++ ||.+ ..+..||..++........ . ....-.+++...+.+|+++ |.+..||
T Consensus 352 ~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m-~----~~r~~~~~~~~~~~IYv~G-----G~~e~yd 421 (480)
T PHA02790 352 PRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPST-Y----YPHYKSCALVFGRRLFLVG-----RNAEFYC 421 (480)
T ss_pred CCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCC-C----CccccceEEEECCEEEEEC-----CceEEec
Confidence 1 1233334888766 6644 3467888887655433211 1 1111123444555666553 3577888
Q ss_pred CCCCCeEEEccCCCCCeEEEEEecCCCEEEEEECC-----CcEEEEECCCCc
Q 001455 992 RHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSA-----SSLQIWLRGTQQ 1038 (1074)
Q Consensus 992 l~t~~~i~~l~gH~~~VtsLafSPDG~~LaSGS~D-----GtIrIWDl~tg~ 1038 (1074)
..+++......-.......-+..-+|+..+.||.+ .+|..||..+.+
T Consensus 422 p~~~~W~~~~~m~~~r~~~~~~v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~ 473 (480)
T PHA02790 422 ESSNTWTLIDDPIYPRDNPELIIVDNKLLLIGGFYRGSYIDTIEVYNNRTYS 473 (480)
T ss_pred CCCCcEeEcCCCCCCccccEEEEECCEEEEECCcCCCcccceEEEEECCCCe
Confidence 87765433221111111111122367777777754 346666665543
No 395
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=90.38 E-value=3.5 Score=50.17 Aligned_cols=177 Identities=17% Similarity=0.229 Sum_probs=95.3
Q ss_pred HHHHHHHHHhcCcchhhhhhhHHhhHhhhhcchhhhhh-hhhcCCCchHHHHHHhhc---ch-hhHHHHHhc-CCChhhh
Q 001455 301 ILEQLLTAISASKEETVIRASVSILTTIILANESVIED-IKKKGLRLSDLATALKRN---VP-EAAILIYLI-KPSPTEI 374 (1074)
Q Consensus 301 ~i~~~~e~~~~s~~~~v~~~~v~il~~~~~~~~~~~~~-~~~~~~~~~~~~~~lk~~---~~-~a~vl~~l~-~~~~~~~ 374 (1074)
++..+.. +.++.++-|-+.|+.-+..+...++...+. | +..+..+|+.. |. -|..+++-+ .+.....
T Consensus 115 l~~~v~~-ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~~------~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~~ 187 (526)
T PF01602_consen 115 LIPDVIK-LLSDPSPYVRKKAALALLKIYRKDPDLVEDEL------IPKLKQLLSDKDPSVVSAALSLLSEIKCNDDSYK 187 (526)
T ss_dssp HHHHHHH-HHHSSSHHHHHHHHHHHHHHHHHCHCCHHGGH------HHHHHHHTTHSSHHHHHHHHHHHHHHHCTHHHHT
T ss_pred HHHHHHH-HhcCCchHHHHHHHHHHHHHhccCHHHHHHHH------HHHHhhhccCCcchhHHHHHHHHHHHccCcchhh
Confidence 3344444 455888899999988888888777776655 3 44566677652 44 667777777 2222212
Q ss_pred hhccchhHHHHHHhcc-ccccCcccccccCchhhHHHHHHHHhhccccccchhhhhhhcchhhHhHHHHHHhcCChHHHH
Q 001455 375 KTLELLPTLVEVICTS-KLYKGKLESVRLTPPAASLMIIEVLVTAFDYATNNMHLAAINSPRVLCGLLDVARHQNLEELI 453 (1074)
Q Consensus 375 ~~~~~~~~l~~v~~~~-~~~~~~~~~~~~~p~~aa~~~l~~ll~~~d~~~~~~~~~~~~s~~~l~~l~~~~~~~~~~e~~ 453 (1074)
+++|.+++.|++- +.... -.-+.+++.|-.=..... ..... ...+..+...+...+..-..
T Consensus 188 ---~~~~~~~~~L~~~l~~~~~----------~~q~~il~~l~~~~~~~~--~~~~~---~~~i~~l~~~l~s~~~~V~~ 249 (526)
T PF01602_consen 188 ---SLIPKLIRILCQLLSDPDP----------WLQIKILRLLRRYAPMEP--EDADK---NRIIEPLLNLLQSSSPSVVY 249 (526)
T ss_dssp ---THHHHHHHHHHHHHTCCSH----------HHHHHHHHHHTTSTSSSH--HHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred ---hhHHHHHHHhhhcccccch----------HHHHHHHHHHHhcccCCh--hhhhH---HHHHHHHHHHhhccccHHHH
Confidence 6777777777642 11101 122233333322111000 00100 22344444444433333344
Q ss_pred HHHHHHHhhhhccCcchhHHHhhcCCcchhhhhhcCCchhHHHHHHHHHHHhccC
Q 001455 454 SLATILVKCIQFDGQCRKYLSEFTAVAPLACLLQSGEKRAIMIALEFFHEILRIP 508 (1074)
Q Consensus 454 ~~~~il~~C~~~dg~cr~~ia~~~~~~~~~~ll~~~~~~~~~~a~~~l~ell~l~ 508 (1074)
.++..+..+...+. .-..-..++..+|.+.+...|..|+..|..|..-+
T Consensus 250 e~~~~i~~l~~~~~------~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~ 298 (526)
T PF01602_consen 250 EAIRLIIKLSPSPE------LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSN 298 (526)
T ss_dssp HHHHHHHHHSSSHH------HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHC
T ss_pred HHHHHHHHhhcchH------HHHhhHHHHHHHhhcccchhehhHHHHHHHhhccc
Confidence 44444442222221 22233567888888888889999999888888776
No 396
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=90.00 E-value=10 Score=46.06 Aligned_cols=263 Identities=14% Similarity=0.114 Sum_probs=133.0
Q ss_pred CCcEEEEEEe-CCEEEEEECCCcEEEEECCCCCeeEEEEec-cCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEccCCceE
Q 001455 794 SGAVTALIYY-KGLLCSGFSDGSIKMWDIKKQSAMLVWDVK-EHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLE 871 (1074)
Q Consensus 794 ~~~VtsLafS-~~~LaSGs~DGtVrIWDl~t~~~~~i~tl~-gH~~~VtsLafSpdg~~LaSGS~DGtIrIWDl~tg~~~ 871 (1074)
..+|..+.+. .+.+..|+.||-- .||..+++. .+.-. ....+|..+.-+-.|. |..|+.+| |.+.+....+..
T Consensus 164 d~~V~aLv~D~~g~lWvgT~dGL~-~fd~~~gka--lql~s~~~dk~I~al~~d~qg~-LWVGTdqG-v~~~e~~G~~~s 238 (671)
T COG3292 164 DTPVVALVFDANGRLWVGTPDGLS-YFDAGRGKA--LQLASPPLDKAINALIADVQGR-LWVGTDQG-VYLQEAEGWRAS 238 (671)
T ss_pred CccceeeeeeccCcEEEecCCcce-EEccccceE--EEcCCCcchhhHHHHHHHhcCc-EEEEeccc-eEEEchhhcccc
Confidence 5678888888 8889999999954 566666543 22111 2225666666555554 66688676 567666553222
Q ss_pred EEEEeccCCCeEEEccCCC-eEEEEecCCeEEEEeCCCceeeeec-----CCCeEEEEEe-CCEEEEEECCCcEEEEEcc
Q 001455 872 LIEVIATKEPIRKLDTYGK-TIFASTQGHRMKVIDSSRTLKDIYR-----SKGIKSMSVV-QGKIYIGCMDSSIQELAVS 944 (1074)
Q Consensus 872 ~~~~~~h~~~V~s~s~dg~-~L~sgS~DgtI~VWDl~~~l~~l~~-----~~~V~sLa~s-dgkLlaGs~DgsI~IwDl~ 944 (1074)
.....-....|..+..|++ .+..|+.+|..+.--.++.+..... -..|.++... +|.+..++.++.+++-+..
T Consensus 239 n~~~~lp~~~I~ll~qD~qG~lWiGTenGl~r~~l~rq~Lq~~~~~~~l~~S~vnsL~~D~dGsLWv~t~~giv~~~~a~ 318 (671)
T COG3292 239 NWGPMLPSGNILLLVQDAQGELWIGTENGLWRTRLPRQGLQIPLSKMHLGVSTVNSLWLDTDGSLWVGTYGGIVRYLTAD 318 (671)
T ss_pred ccCCCCcchheeeeecccCCCEEEeecccceeEecCCCCccccccccCCccccccceeeccCCCEeeeccCceEEEecch
Confidence 1111122333444444433 6777777664433322222222111 2235555555 8889999888877665442
Q ss_pred CCceeeeccccccccCCCCCeEEEEEcC---CceEEEEEecCCCeEEEEECCCCCeEEEcc-CCCCCeEEEEEecCCCEE
Q 001455 945 NNVEREIKAPFKSWRLQSKPINSLVVYK---DWLYSASSSVEGSNIKEWRRHRKPQISIAP-EKGTTIQAMAVVEDFIYL 1020 (1074)
Q Consensus 945 tg~~~~i~~~~r~~~~h~~~I~sL~~sp---d~i~las~S~dDgtI~IWDl~t~~~i~~l~-gH~~~VtsLafSPDG~~L 1020 (1074)
-.....+. ...+..+......+ ++......+ -|...+-+-.++..++... --...|+..++..+|. +
T Consensus 319 w~~ma~in------~~dG~v~~~~~~a~~ll~~~v~~~ns--~g~L~van~stG~~v~sv~q~Rg~nit~~~~d~~g~-l 389 (671)
T COG3292 319 WKRMAVIN------DSDGGVSQYEAVAPALLSWGVRQLNS--IGELMVANGSTGELVRSVHQLRGMNITTTLEDSRGR-L 389 (671)
T ss_pred hhheeeee------cCCCchhhhhccCchhcccceeeccc--cceEEEecCCCCcEEEEeeeccccccchhhhccCCc-E
Confidence 11100010 01111111122222 111111111 1234444444555444321 1234577777776544 4
Q ss_pred EEEECCCcEEEEECCC-CcEEEEEeCC--CCeEEEEEcC-CEEEEEECCCcEEE
Q 001455 1021 NYNSSASSLQIWLRGT-QQKVGRISAG--SKITSLLTAN-DIVLCGTETGLIKG 1070 (1074)
Q Consensus 1021 aSGS~DGtIrIWDl~t-g~~l~tL~~h--s~VtsLa~dg-~~LaSGs~DG~IrI 1070 (1074)
..|+..+-+-.|+.++ +..+....+- ++|..+-.++ +-|..|+.+|.++.
T Consensus 390 Wlgs~q~GLsrl~n~n~~avlde~agl~ss~V~aived~dnsLWIGTs~Glvk~ 443 (671)
T COG3292 390 WLGSMQNGLSRLDNKNEWAVLDEDAGLPSSEVSAIVEDPDNSLWIGTSGGLVKR 443 (671)
T ss_pred EEEecccchhhhccCCcccccccccCCcccceeeeeecCCCCEEEeccCCeEec
Confidence 5555554466677666 4444443333 4588777662 24888998887653
No 397
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=89.87 E-value=45 Score=43.14 Aligned_cols=197 Identities=12% Similarity=0.081 Sum_probs=106.4
Q ss_pred CCEEEEEeCCCeEEEEEccCCceEEEEEeccCCC----------eEEEc---------------cCCCeEEEEecCCeEE
Q 001455 848 GESLLSGSADKTIGVWQMVQRKLELIEVIATKEP----------IRKLD---------------TYGKTIFASTQGHRMK 902 (1074)
Q Consensus 848 g~~LaSGS~DGtIrIWDl~tg~~~~~~~~~h~~~----------V~s~s---------------~dg~~L~sgS~DgtI~ 902 (1074)
+..|+.++.++.|.-.|..+|+............ +.-+. ..+..++.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 5567777888888888988888765543322110 00011 1344788888899888
Q ss_pred EEeCC-Cceee-eecCCCe----------------EE-EEEeCCEEEEEEC----------CCcEEEEEccCCceeeecc
Q 001455 903 VIDSS-RTLKD-IYRSKGI----------------KS-MSVVQGKIYIGCM----------DSSIQELAVSNNVEREIKA 953 (1074)
Q Consensus 903 VWDl~-~~l~~-l~~~~~V----------------~s-La~sdgkLlaGs~----------DgsI~IwDl~tg~~~~i~~ 953 (1074)
-.|.. +.... +..+..| ++ -.+.++.++.|+. +|.|+-+|..+|+..-...
T Consensus 274 ALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~ 353 (764)
T TIGR03074 274 ALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWD 353 (764)
T ss_pred EEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEEe
Confidence 88866 22221 1111111 11 1123778777653 6889999999998743321
Q ss_pred cc-----------ccccCCCCCe-EEEEEcCC--ceEEEEEec---------------CCCeEEEEECCCCCeEEEccCC
Q 001455 954 PF-----------KSWRLQSKPI-NSLVVYKD--WLYSASSSV---------------EGSNIKEWRRHRKPQISIAPEK 1004 (1074)
Q Consensus 954 ~~-----------r~~~~h~~~I-~sL~~spd--~i~las~S~---------------dDgtI~IWDl~t~~~i~~l~gH 1004 (1074)
.. ..|......+ ...++.+. -+|+.++++ -.+.|.-.|.++|+..-.+...
T Consensus 354 ~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~~ 433 (764)
T TIGR03074 354 PGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQTV 433 (764)
T ss_pred cCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEeccc
Confidence 10 0111000110 12223222 122211110 1246677788888765444331
Q ss_pred CCCeEE---------EEEec-CCC---EEEEEECCCcEEEEECCCCcEEEEEe
Q 001455 1005 GTTIQA---------MAVVE-DFI---YLNYNSSASSLQIWLRGTQQKVGRIS 1044 (1074)
Q Consensus 1005 ~~~Vts---------LafSP-DG~---~LaSGS~DGtIrIWDl~tg~~l~tL~ 1044 (1074)
...++. +.+.. +|+ .++.++.+|.+++.|.++|+.+...+
T Consensus 434 ~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~ 486 (764)
T TIGR03074 434 HHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVE 486 (764)
T ss_pred CCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeece
Confidence 111111 22322 564 78999999999999999999986543
No 398
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=89.75 E-value=36 Score=37.49 Aligned_cols=92 Identities=12% Similarity=-0.065 Sum_probs=58.7
Q ss_pred EEEEEcCCceEEEEEecCCCeEEEEE--CCCCCe-----EEEccC----CCCCeEEEEEecCCCEEEEEECCCcEEEEEC
Q 001455 966 NSLVVYKDWLYSASSSVEGSNIKEWR--RHRKPQ-----ISIAPE----KGTTIQAMAVVEDFIYLNYNSSASSLQIWLR 1034 (1074)
Q Consensus 966 ~sL~~spd~i~las~S~dDgtI~IWD--l~t~~~-----i~~l~g----H~~~VtsLafSPDG~~LaSGS~DGtIrIWDl 1034 (1074)
+.++|..+...+.-...-+-+|.-|| ..+|.. +..+.. .....-.++...+|.+.++.-..|+|...|.
T Consensus 161 Ngl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp 240 (310)
T KOG4499|consen 161 NGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDP 240 (310)
T ss_pred ccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECC
Confidence 44566655443332222345676677 444432 111111 1112234555668888888888899999999
Q ss_pred CCCcEEEEEeCCC-CeEEEEEcCC
Q 001455 1035 GTQQKVGRISAGS-KITSLLTAND 1057 (1074)
Q Consensus 1035 ~tg~~l~tL~~hs-~VtsLa~dg~ 1057 (1074)
.+|+.+.++.-.. +|+|++|-|.
T Consensus 241 ~tGK~L~eiklPt~qitsccFgGk 264 (310)
T KOG4499|consen 241 TTGKILLEIKLPTPQITSCCFGGK 264 (310)
T ss_pred CCCcEEEEEEcCCCceEEEEecCC
Confidence 9999999999885 4999999866
No 399
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=89.58 E-value=0.97 Score=37.10 Aligned_cols=33 Identities=15% Similarity=0.252 Sum_probs=29.6
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCeEEEEEccCCc
Q 001455 836 RKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRK 869 (1074)
Q Consensus 836 ~~~VtsLafSpdg~~LaSGS~DGtIrIWDl~tg~ 869 (1074)
...|.+++|+|..+.||.|+.||.|.++.+ +++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~q 43 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQ 43 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCc
Confidence 457999999999999999999999999998 443
No 400
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=89.56 E-value=1.9 Score=40.72 Aligned_cols=118 Identities=16% Similarity=0.103 Sum_probs=87.4
Q ss_pred hhhhccchhHHHHHHhccccccCcccccccCchhhHHHHHHHHhhccccccchhhhhhhcchhhHhHHHHHHhcCChHHH
Q 001455 373 EIKTLELLPTLVEVICTSKLYKGKLESVRLTPPAASLMIIEVLVTAFDYATNNMHLAAINSPRVLCGLLDVARHQNLEEL 452 (1074)
Q Consensus 373 ~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~~p~~aa~~~l~~ll~~~d~~~~~~~~~~~~s~~~l~~l~~~~~~~~~~e~ 452 (1074)
++.+.+.+|.+++.+..++.. -+..|+..|..+-.+. ......+...++++.++..+..++.+=+
T Consensus 2 ~~~~~~~i~~l~~~l~~~~~~----------~~~~a~~~l~~l~~~~-----~~~~~~~~~~~~i~~l~~~l~~~~~~v~ 66 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSDEN----------VQREAAWALSNLSAGN-----NDNIQAVVEAGGLPALVQLLKSEDEEVV 66 (120)
T ss_pred hHHHcCChHHHHHHHHcCCHH----------HHHHHHHHHHHHhcCC-----HHHHHHHHHCCChHHHHHHHhCCCHHHH
Confidence 566778999999999865411 2577888887775543 2334444557889999999998888888
Q ss_pred HHHHHHHHhhhhccCcchhHHHhhcCCcchhhhhhcCCchhHHHHHHHHHHHh
Q 001455 453 ISLATILVKCIQFDGQCRKYLSEFTAVAPLACLLQSGEKRAIMIALEFFHEIL 505 (1074)
Q Consensus 453 ~~~~~il~~C~~~dg~cr~~ia~~~~~~~~~~ll~~~~~~~~~~a~~~l~ell 505 (1074)
..++..|-.-.+.....+..+.+.--..-++++|...+...+..|+.+|..|.
T Consensus 67 ~~a~~~L~~l~~~~~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 67 KAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHHHHHHHccCcHHHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 88888887776665566666666656788888999888888888888887653
No 401
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.28 E-value=23 Score=44.60 Aligned_cols=179 Identities=8% Similarity=0.031 Sum_probs=86.6
Q ss_pred CeEEEEEccCCceEEEEEeccCCCeEEEccC-CCeEEEEecCCeEEEEeCCCceeeeec------CCCeE-EEEEeCCEE
Q 001455 858 KTIGVWQMVQRKLELIEVIATKEPIRKLDTY-GKTIFASTQGHRMKVIDSSRTLKDIYR------SKGIK-SMSVVQGKI 929 (1074)
Q Consensus 858 GtIrIWDl~tg~~~~~~~~~h~~~V~s~s~d-g~~L~sgS~DgtI~VWDl~~~l~~l~~------~~~V~-sLa~sdgkL 929 (1074)
-.|+|++. +|+......-.|. .+..+.++ ...+++...+|++++|++-+....... ...|. |..|.+|-.
T Consensus 64 ~~I~If~~-sG~lL~~~~w~~~-~lI~mgWs~~eeLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~GVa 141 (829)
T KOG2280|consen 64 PYIRIFNI-SGQLLGRILWKHG-ELIGMGWSDDEELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNGVA 141 (829)
T ss_pred eeEEEEec-cccchHHHHhcCC-CeeeecccCCceEEEEeccceEEEeecchhhhcccccccccccCceeEEEEecCceE
Confidence 45777776 3443332223333 44445443 457888899999999998754333311 12233 333345543
Q ss_pred EEEECCCcEEEEEccCCceeeeccccccccCCCCCeEEEEEcCC---ceEEEEEecCCCeEEEEECC--CCCeEEEccCC
Q 001455 930 YIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKD---WLYSASSSVEGSNIKEWRRH--RKPQISIAPEK 1004 (1074)
Q Consensus 930 laGs~DgsI~IwDl~tg~~~~i~~~~r~~~~h~~~I~sL~~spd---~i~las~S~dDgtI~IWDl~--t~~~i~~l~gH 1004 (1074)
+-...+..+.+.+.......... .......+-.+....++ ...++......+ ..++... ..+... +...
T Consensus 142 vlt~~g~v~~i~~~~~~~~~~~~----diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~q~~~-~~~~ 215 (829)
T KOG2280|consen 142 VLTVSGQVILINGVEEPKLRKMP----DIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESRVQLHA-LSWP 215 (829)
T ss_pred EEecCCcEEEEcCCCcchhhhCC----CCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceecccccccc-cCCC
Confidence 33332333333333321111110 00111111133333222 111111100000 0111111 122122 2222
Q ss_pred CCCeEEEEEecCCCEEEEEECCCcEEEEECCCCcEEEEEe
Q 001455 1005 GTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRIS 1044 (1074)
Q Consensus 1005 ~~~VtsLafSPDG~~LaSGS~DGtIrIWDl~tg~~l~tL~ 1044 (1074)
...+..+..||++++|+-=..+|.|.+-+.+..+.+.++.
T Consensus 216 ~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~ 255 (829)
T KOG2280|consen 216 NSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFN 255 (829)
T ss_pred CceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccC
Confidence 3457889999999999999999999999888888877776
No 402
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=89.20 E-value=0.98 Score=37.06 Aligned_cols=35 Identities=6% Similarity=0.172 Sum_probs=30.3
Q ss_pred CCCeEEEEEecCCCEEEEEECCCcEEEEECCCCcEE
Q 001455 1005 GTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKV 1040 (1074)
Q Consensus 1005 ~~~VtsLafSPDG~~LaSGS~DGtIrIWDl~tg~~l 1040 (1074)
...|..++|+|...+||.|+.||.|.++.+ +++.+
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qri 45 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQRI 45 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcCc
Confidence 346999999999999999999999999998 55543
No 403
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=88.87 E-value=12 Score=46.73 Aligned_cols=71 Identities=20% Similarity=0.258 Sum_probs=50.4
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCeEEEEEccCCceEEEEEeccCCCeEEE----ccCCCeEEEEecCCeEEEEeCC
Q 001455 837 KAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATKEPIRKL----DTYGKTIFASTQGHRMKVIDSS 907 (1074)
Q Consensus 837 ~~VtsLafSpdg~~LaSGS~DGtIrIWDl~tg~~~~~~~~~h~~~V~s~----s~dg~~L~sgS~DgtI~VWDl~ 907 (1074)
...+-+.-+.-++.-+.-+...++.|||.+.+...........+.|..+ .++++.+++.+..+.|.+|.-.
T Consensus 30 ~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~ 104 (631)
T PF12234_consen 30 SNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQL 104 (631)
T ss_pred CCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEcc
Confidence 3444455455455433444456799999999887766666667788764 4889999999999999988653
No 404
>PHA02790 Kelch-like protein; Provisional
Probab=88.53 E-value=20 Score=43.69 Aligned_cols=143 Identities=8% Similarity=0.050 Sum_probs=74.7
Q ss_pred EEeCCEEEE-EECC--CcEEEEEccCCceeeeccccccccCCCCCeEEEEEcCCceEEEEEecC-CCeEEEEECCCCCeE
Q 001455 923 SVVQGKIYI-GCMD--SSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVE-GSNIKEWRRHRKPQI 998 (1074)
Q Consensus 923 a~sdgkLla-Gs~D--gsI~IwDl~tg~~~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S~d-DgtI~IWDl~t~~~i 998 (1074)
+.-+|++++ ||.+ ..+..||..+++..... +. . ....-.+.+...+.+|++++... ...+..||..++...
T Consensus 315 v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~-~l---~-~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~ 389 (480)
T PHA02790 315 VPANNKLYVVGGLPNPTSVERWFHGDAAWVNMP-SL---L-KPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQ 389 (480)
T ss_pred EEECCEEEEECCcCCCCceEEEECCCCeEEECC-CC---C-CCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEE
Confidence 334788665 5543 45788887765543321 11 1 11122344555677777655321 135778888766543
Q ss_pred EEccCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCcEEE--EEeCC-CCeEEEEEcCCEEEEEECC-----CcEEE
Q 001455 999 SIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVG--RISAG-SKITSLLTANDIVLCGTET-----GLIKG 1070 (1074)
Q Consensus 999 ~~l~gH~~~VtsLafSPDG~~LaSGS~DGtIrIWDl~tg~~l~--tL~~h-s~VtsLa~dg~~LaSGs~D-----G~IrI 1070 (1074)
....-....-...+..-+|+..+.| |.+.+||.++.+... .+... .....+..+|++.+.||.+ ..|..
T Consensus 390 ~~~~m~~~r~~~~~~~~~~~IYv~G---G~~e~ydp~~~~W~~~~~m~~~r~~~~~~v~~~~IYviGG~~~~~~~~~ve~ 466 (480)
T PHA02790 390 FGPSTYYPHYKSCALVFGRRLFLVG---RNAEFYCESSNTWTLIDDPIYPRDNPELIIVDNKLLLIGGFYRGSYIDTIEV 466 (480)
T ss_pred eCCCCCCccccceEEEECCEEEEEC---CceEEecCCCCcEeEcCCCCCCccccEEEEECCEEEEECCcCCCcccceEEE
Confidence 3211111111112223466666666 357789887765532 22211 2234456778888888765 35667
Q ss_pred Eec
Q 001455 1071 WIP 1073 (1074)
Q Consensus 1071 Wdi 1073 (1074)
|||
T Consensus 467 Yd~ 469 (480)
T PHA02790 467 YNN 469 (480)
T ss_pred EEC
Confidence 775
No 405
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=87.25 E-value=11 Score=47.24 Aligned_cols=106 Identities=8% Similarity=0.015 Sum_probs=68.3
Q ss_pred eEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEcc-CCCCCeEEEEEe--cCCCEEEEEECCCcEEEEEC-------
Q 001455 965 INSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAP-EKGTTIQAMAVV--EDFIYLNYNSSASSLQIWLR------- 1034 (1074)
Q Consensus 965 I~sL~~spd~i~las~S~dDgtI~IWDl~t~~~i~~l~-gH~~~VtsLafS--PDG~~LaSGS~DGtIrIWDl------- 1034 (1074)
..-+..+.-+...+.. .+..++.|||...+.....-. ...+.|..+.|. |||+.+++.|..+.|.++.-
T Consensus 32 ~~li~gss~~k~a~V~-~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~ 110 (631)
T PF12234_consen 32 PSLISGSSIKKIAVVD-SSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTN 110 (631)
T ss_pred cceEeecccCcEEEEE-CCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhc
Confidence 3444444444444433 356789999998877443222 456789999995 79999999999999999852
Q ss_pred --CCCcEEEEEe--CC--CCeEEEEEcCC-EEEEEECCCcEEEEe
Q 001455 1035 --GTQQKVGRIS--AG--SKITSLLTAND-IVLCGTETGLIKGWI 1072 (1074)
Q Consensus 1035 --~tg~~l~tL~--~h--s~VtsLa~dg~-~LaSGs~DG~IrIWd 1072 (1074)
.+..++..+. .+ ++|.+..|-++ .+++|+ ++.+.|++
T Consensus 111 ~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s-GNqlfv~d 154 (631)
T PF12234_consen 111 KGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS-GNQLFVFD 154 (631)
T ss_pred CCcccceeEEEEeecCCCCCccceeEecCCeEEEEe-CCEEEEEC
Confidence 1233455443 22 45888888644 555555 44577765
No 406
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=87.08 E-value=52 Score=38.26 Aligned_cols=212 Identities=9% Similarity=-0.012 Sum_probs=104.9
Q ss_pred cCCCCEEEEE---------eCCCeEEEEEccCCceEEEEEeccCCCeEEEccCCCeEEEEecCCeEEEEeCCCc-eeeee
Q 001455 845 FEPGESLLSG---------SADKTIGVWQMVQRKLELIEVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSSRT-LKDIY 914 (1074)
Q Consensus 845 Spdg~~LaSG---------S~DGtIrIWDl~tg~~~~~~~~~h~~~V~s~s~dg~~L~sgS~DgtI~VWDl~~~-l~~l~ 914 (1074)
|||+++++.. +..+.+.+||+.+++............-..++|+|+.++.+. ++.|.+++.... ...+.
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT 79 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPPPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLT 79 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCCccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEec
Confidence 5777775542 234678999999987544333323344456899999988886 467999987522 22222
Q ss_pred cCC-------------------CeEEEEEe-CCE-EEE-EECCCcEEEEEccCCceeeeccccccccCCCCCeEEEEEcC
Q 001455 915 RSK-------------------GIKSMSVV-QGK-IYI-GCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYK 972 (1074)
Q Consensus 915 ~~~-------------------~V~sLa~s-dgk-Lla-Gs~DgsI~IwDl~tg~~~~i~~~~r~~~~h~~~I~sL~~sp 972 (1074)
..+ .-..+-|+ ||+ ++. -..+..|..+.+....... ..-..+..+.+-.
T Consensus 80 ~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~---------~~yp~~~~~~YPk 150 (353)
T PF00930_consen 80 TDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPD---------SQYPEVESIRYPK 150 (353)
T ss_dssp S--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSST---------ESS-EEEEEE--B
T ss_pred cccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCcc---------ccCCcccccccCC
Confidence 111 12345565 555 322 4445555555443200000 0001223333322
Q ss_pred CceEEEEEecCCCeEEEEECCCCCeEEEc-----cCCCCCeEEEEEecCCCEEEE--EECC---CcEEEEECCCCcEE--
Q 001455 973 DWLYSASSSVEGSNIKEWRRHRKPQISIA-----PEKGTTIQAMAVVEDFIYLNY--NSSA---SSLQIWLRGTQQKV-- 1040 (1074)
Q Consensus 973 d~i~las~S~dDgtI~IWDl~t~~~i~~l-----~gH~~~VtsLafSPDG~~LaS--GS~D---GtIrIWDl~tg~~l-- 1040 (1074)
-|.--.. -.+.++|+.+++....- ......+..+.|++++..++. .+.+ ..+.+.|..++..-
T Consensus 151 ~G~~np~-----v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~ 225 (353)
T PF00930_consen 151 AGDPNPR-----VSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVV 225 (353)
T ss_dssp TTS---E-----EEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEE
T ss_pred CCCcCCc-----eEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEE
Confidence 2211111 14777888877653221 233457899999999983333 3333 24566677776553
Q ss_pred EEEeCCCCeE---EEEE---cC-CEEEEEECCCcEEEE
Q 001455 1041 GRISAGSKIT---SLLT---AN-DIVLCGTETGLIKGW 1071 (1074)
Q Consensus 1041 ~tL~~hs~Vt---sLa~---dg-~~LaSGs~DG~IrIW 1071 (1074)
..-..++.|. ...| ++ .++.....||.-+||
T Consensus 226 ~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly 263 (353)
T PF00930_consen 226 LEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLY 263 (353)
T ss_dssp EEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEE
T ss_pred EEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEE
Confidence 2222333321 2222 33 366666677866665
No 407
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=86.76 E-value=16 Score=44.88 Aligned_cols=206 Identities=16% Similarity=0.176 Sum_probs=122.5
Q ss_pred hccchhHHHHHHhccccccCcccccccCchhhHHHHHHHHhhccccccchhhhhhhcchhhHhHHHHHHhcCChHHHHHH
Q 001455 376 TLELLPTLVEVICTSKLYKGKLESVRLTPPAASLMIIEVLVTAFDYATNNMHLAAINSPRVLCGLLDVARHQNLEELISL 455 (1074)
Q Consensus 376 ~~~~~~~l~~v~~~~~~~~~~~~~~~~~p~~aa~~~l~~ll~~~d~~~~~~~~~~~~s~~~l~~l~~~~~~~~~~e~~~~ 455 (1074)
..+++|.++..+...+.. + .++|.-+|..|.. +......++.+.++..|...+...+..-|.++
T Consensus 117 ~~~l~~~i~~~L~~~d~~----V------a~~A~~~L~~l~~------~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv 180 (503)
T PF10508_consen 117 DNELLPLIIQCLRDPDLS----V------AKAAIKALKKLAS------HPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRV 180 (503)
T ss_pred CccHHHHHHHHHcCCcHH----H------HHHHHHHHHHHhC------CchhHHHHhCcchHHHHHHHHhccCHHHHHHH
Confidence 447888888888764432 1 2556667777754 22455667777778888877777688889999
Q ss_pred HHHHHhhhhccCcchhHHHhhcCCcchhhhhhcCCchhHHHHHHHHHHHhccCchhhHHHHHHhhccCchhHHHHHHHHh
Q 001455 456 ATILVKCIQFDGQCRKYLSEFTAVAPLACLLQSGEKRAIMIALEFFHEILRIPRSSAIDLLQRIHKEGNINILHILKLSL 535 (1074)
Q Consensus 456 ~~il~~C~~~dg~cr~~ia~~~~~~~~~~ll~~~~~~~~~~a~~~l~ell~l~r~~~~~~l~~~~~~~~~~~mh~ll~~l 535 (1074)
-+++...........+++...==...++..|.+.+.-.+.+|+++|.||..-+= ..++ |-+.|.+..+.-++..-
T Consensus 181 ~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~--g~~y---L~~~gi~~~L~~~l~~~ 255 (503)
T PF10508_consen 181 YELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETPH--GLQY---LEQQGIFDKLSNLLQDS 255 (503)
T ss_pred HHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChh--HHHH---HHhCCHHHHHHHHHhcc
Confidence 999998887777777777775445566666777777789999999999998221 2222 23344444444444333
Q ss_pred hcccchhhHHHHHHHhhhccc--cCCCCCCcchHHHHHHHHHHHh---ccCChhhHHHHHHHHHhcCccccccCchhh
Q 001455 536 QQLQSDYQLLAANLLLQLDTL--ENTTGKSVFTEEAMQVILKAVA---SEESSTMQLLSSFILSNIGGTFSWTGEPYT 608 (1074)
Q Consensus 536 q~~~~~~~~~~a~lllqldll--~~p~~~s~yreea~~~~~~~l~---~~~~~~~q~~~~~~l~~l~g~fs~sG~~~~ 608 (1074)
...|.--..++-+.+.-+.-+ .+|.+. -+..-++++.|- .+.++..+..|-+||-++| .+..|+-+-
T Consensus 256 ~~dp~~~~~~l~g~~~f~g~la~~~~~~v----~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~ig--st~~G~~~L 327 (503)
T PF10508_consen 256 EEDPRLSSLLLPGRMKFFGNLARVSPQEV----LELYPAFLERLFSMLESQDPTIREVAFDTLGQIG--STVEGKQLL 327 (503)
T ss_pred ccCCcccchhhhhHHHHHHHHHhcChHHH----HHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHh--CCHHHHHHH
Confidence 222201111222222222211 123222 112233333333 3357777777778888887 445665443
No 408
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=86.40 E-value=62 Score=36.38 Aligned_cols=185 Identities=12% Similarity=0.038 Sum_probs=106.7
Q ss_pred CCCCcEEEEEE-eCCE-EEEEECCC--cEEEEECCCCCeeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEccC
Q 001455 792 KCSGAVTALIY-YKGL-LCSGFSDG--SIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQ 867 (1074)
Q Consensus 792 gH~~~VtsLaf-S~~~-LaSGs~DG--tVrIWDl~t~~~~~i~tl~gH~~~VtsLafSpdg~~LaSGS~DGtIrIWDl~t 867 (1074)
..+.-...+.| .++. +-+.|.-| .|+.+|..+++......+...- -=-.++.. +++...-.-.++...+||..+
T Consensus 42 d~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~-FgEGit~~-~d~l~qLTWk~~~~f~yd~~t 119 (264)
T PF05096_consen 42 DPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRY-FGEGITIL-GDKLYQLTWKEGTGFVYDPNT 119 (264)
T ss_dssp -TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT---EEEEEEE-TTEEEEEESSSSEEEEEETTT
T ss_pred CCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccc-cceeEEEE-CCEEEEEEecCCeEEEEcccc
Confidence 34455667888 4665 45666665 8999999998764444443211 11123332 233334456788999999988
Q ss_pred CceEEEEEeccCCCeEEEccCCCeEEEEecCCeEEEEeCCC--ceeeee---cC---CCeEEEEEeCCEEEEEE-CCCcE
Q 001455 868 RKLELIEVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSSR--TLKDIY---RS---KGIKSMSVVQGKIYIGC-MDSSI 938 (1074)
Q Consensus 868 g~~~~~~~~~h~~~V~s~s~dg~~L~sgS~DgtI~VWDl~~--~l~~l~---~~---~~V~sLa~sdgkLlaGs-~DgsI 938 (1074)
-+...... ....-..+..++..++.......++++|... ....+. .+ ..+..+.+-+|.+++-- ....|
T Consensus 120 l~~~~~~~--y~~EGWGLt~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i~G~IyANVW~td~I 197 (264)
T PF05096_consen 120 LKKIGTFP--YPGEGWGLTSDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYINGKIYANVWQTDRI 197 (264)
T ss_dssp TEEEEEEE---SSS--EEEECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEETTEEEEEETTSSEE
T ss_pred ceEEEEEe--cCCcceEEEcCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEEcCEEEEEeCCCCeE
Confidence 76544333 3344566778899999988889999999862 222222 22 23667778899999844 56678
Q ss_pred EEEEccCCceeeeccccccc---------cCCCCCeEEEEEcCCceEEEEE
Q 001455 939 QELAVSNNVEREIKAPFKSW---------RLQSKPINSLVVYKDWLYSASS 980 (1074)
Q Consensus 939 ~IwDl~tg~~~~i~~~~r~~---------~~h~~~I~sL~~spd~i~las~ 980 (1074)
...|..+|............ .....-.+.++++|....+...
T Consensus 198 ~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vT 248 (264)
T PF05096_consen 198 VRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVT 248 (264)
T ss_dssp EEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEE
T ss_pred EEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEE
Confidence 88899998875432111111 1124567889998765544433
No 409
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=86.23 E-value=78 Score=37.37 Aligned_cols=210 Identities=12% Similarity=0.109 Sum_probs=107.9
Q ss_pred CEEEEEEcCCCCEEEEE-eCCC----eEEEEEccCCceEEEEEeccCCCeEEEccCCCeEEEEecC-----------CeE
Q 001455 838 AVTSFSLFEPGESLLSG-SADK----TIGVWQMVQRKLELIEVIATKEPIRKLDTYGKTIFASTQG-----------HRM 901 (1074)
Q Consensus 838 ~VtsLafSpdg~~LaSG-S~DG----tIrIWDl~tg~~~~~~~~~h~~~V~s~s~dg~~L~sgS~D-----------gtI 901 (1074)
.+....++|+|++++-+ +..| +++++|+.+|+............-..|.++++.++....+ ..|
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v 204 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQV 204 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEE
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEE
Confidence 34467899999997633 4334 5999999999765443333322225678888877666432 247
Q ss_pred EEEeCCCcee---eee-c-C-CC-eEEEEEe-CCEE-EE-EEC--C-CcEEEEEccCC-----ceeeeccccccccCCCC
Q 001455 902 KVIDSSRTLK---DIY-R-S-KG-IKSMSVV-QGKI-YI-GCM--D-SSIQELAVSNN-----VEREIKAPFKSWRLQSK 963 (1074)
Q Consensus 902 ~VWDl~~~l~---~l~-~-~-~~-V~sLa~s-dgkL-la-Gs~--D-gsI~IwDl~tg-----~~~~i~~~~r~~~~h~~ 963 (1074)
+.|.+..... .+. . . .. ...+..+ +++. +. ... + ..+++.|+..+ ....+ .....
T Consensus 205 ~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l-------~~~~~ 277 (414)
T PF02897_consen 205 YRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLL-------SPRED 277 (414)
T ss_dssp EEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEE-------EESSS
T ss_pred EEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEE-------eCCCC
Confidence 8888773221 233 2 2 22 4455566 6663 32 222 2 45777888764 11111 12223
Q ss_pred Ce-EEEEEcCCceEEEEEe-cCCCeEEEEECCCCCe---EEEccCCCCCeEEEEEecCCCEEEE-EECCC--cEEEEECC
Q 001455 964 PI-NSLVVYKDWLYSASSS-VEGSNIKEWRRHRKPQ---ISIAPEKGTTIQAMAVVEDFIYLNY-NSSAS--SLQIWLRG 1035 (1074)
Q Consensus 964 ~I-~sL~~spd~i~las~S-~dDgtI~IWDl~t~~~---i~~l~gH~~~VtsLafSPDG~~LaS-GS~DG--tIrIWDl~ 1035 (1074)
.+ ..+....+..++.+.. ...+.|.-.++..... ...+..|...+.--.+...+.+|+. ...++ .|++|++.
T Consensus 278 ~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~ 357 (414)
T PF02897_consen 278 GVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLD 357 (414)
T ss_dssp S-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT
T ss_pred ceEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECC
Confidence 33 3344444444444431 1235666677766542 3355556654333344444444444 44443 57888888
Q ss_pred CCcEEEEEeCC--CCeEEEEE
Q 001455 1036 TQQKVGRISAG--SKITSLLT 1054 (1074)
Q Consensus 1036 tg~~l~tL~~h--s~VtsLa~ 1054 (1074)
.+.....+... +.|..+..
T Consensus 358 ~~~~~~~~~~p~~g~v~~~~~ 378 (414)
T PF02897_consen 358 DGKESREIPLPEAGSVSGVSG 378 (414)
T ss_dssp -TEEEEEEESSSSSEEEEEES
T ss_pred CCcEEeeecCCcceEEeccCC
Confidence 55555555543 33555553
No 410
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=85.87 E-value=1.3e+02 Score=39.43 Aligned_cols=257 Identities=11% Similarity=0.076 Sum_probs=130.1
Q ss_pred CCEEEEEECCCcEEEEECCCCCee--EEEEeccCCCCEEEEEEcCCCCE-EEEEeCCCeEEEEEccCCceEEEEEe-ccC
Q 001455 804 KGLLCSGFSDGSIKMWDIKKQSAM--LVWDVKEHRKAVTSFSLFEPGES-LLSGSADKTIGVWQMVQRKLELIEVI-ATK 879 (1074)
Q Consensus 804 ~~~LaSGs~DGtVrIWDl~t~~~~--~i~tl~gH~~~VtsLafSpdg~~-LaSGS~DGtIrIWDl~tg~~~~~~~~-~h~ 879 (1074)
.++|.++..||.+.-|.++..... ..+...-...|+.--.|+..++. +++++ |+-..+|-. ++++...... ..-
T Consensus 595 ~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~s-drP~viY~~-n~kLv~spls~kev 672 (1096)
T KOG1897|consen 595 IHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALS-DRPTVIYSS-NGKLVYSPLSLKEV 672 (1096)
T ss_pred ceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeC-CCCEEEEec-CCcEEEeccchHHh
Confidence 458999999999987765543322 11111123456666667655544 55555 555566654 3333221111 111
Q ss_pred CCeEEEcc--CCCeEEEEecCCeEEEEeCCC----ceeeeecCCCeEEEEEeC-CEEEE-EE-----------C---CCc
Q 001455 880 EPIRKLDT--YGKTIFASTQGHRMKVIDSSR----TLKDIYRSKGIKSMSVVQ-GKIYI-GC-----------M---DSS 937 (1074)
Q Consensus 880 ~~V~s~s~--dg~~L~sgS~DgtI~VWDl~~----~l~~l~~~~~V~sLa~sd-gkLla-Gs-----------~---Dgs 937 (1074)
..+..|.. .+..++.+ ..+.+++..++. ..+++.-+...+.+++.. ..++. .+ . -..
T Consensus 673 ~~~c~f~s~a~~d~l~~~-~~~~l~i~tid~iqkl~irtvpl~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~ 751 (1096)
T KOG1897|consen 673 NHMCPFNSDAYPDSLASA-NGGALTIGTIDEIQKLHIRTVPLGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSF 751 (1096)
T ss_pred hhhcccccccCCceEEEe-cCCceEEEEecchhhcceeeecCCCChhheEecccceEEEEEecccccchhhcCCcceEEE
Confidence 12223332 22344444 344566665552 223333344444555532 22211 11 0 124
Q ss_pred EEEEEccCCceeeeccccccccC--CCCCeEEEEEcCC-ceEEEEEe---------cCCCeEEEEECCCCCeEEEccCC-
Q 001455 938 IQELAVSNNVEREIKAPFKSWRL--QSKPINSLVVYKD-WLYSASSS---------VEGSNIKEWRRHRKPQISIAPEK- 1004 (1074)
Q Consensus 938 I~IwDl~tg~~~~i~~~~r~~~~--h~~~I~sL~~spd-~i~las~S---------~dDgtI~IWDl~t~~~i~~l~gH- 1004 (1074)
++++|-.+-+..... .+.. ....+.+..++.| +.+.+.+. +..|.|.+|....+..++....+
T Consensus 752 l~vlD~nTf~vl~~h----ef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~ 827 (1096)
T KOG1897|consen 752 LRVLDQNTFEVLSSH----EFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETV 827 (1096)
T ss_pred EEEecCCceeEEeec----cccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeee
Confidence 566666553332211 1111 1234455557766 55554443 34477888876664334333222
Q ss_pred -CCCeEEEEEecCCCEEEEEECCCcEEEEECCCCcEEEEEeCC-CCeEE--EEEcCCEEEEEECCCcEEE
Q 001455 1005 -GTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAG-SKITS--LLTANDIVLCGTETGLIKG 1070 (1074)
Q Consensus 1005 -~~~VtsLafSPDG~~LaSGS~DGtIrIWDl~tg~~l~tL~~h-s~Vts--La~dg~~LaSGs~DG~IrI 1070 (1074)
.+.|.++.. -+|+++|.- ...|++|+..+.+.++.-..+ .++.. +...|+.++.|..-+.|.+
T Consensus 828 v~Gav~aL~~-fngkllA~I--n~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitl 894 (1096)
T KOG1897|consen 828 VKGAVYALVE-FNGKLLAGI--NQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITL 894 (1096)
T ss_pred eccceeehhh-hCCeEEEec--CcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEE
Confidence 223333321 268887765 478999999888666555444 34444 5566899999988777765
No 411
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=85.71 E-value=49 Score=35.99 Aligned_cols=56 Identities=16% Similarity=0.201 Sum_probs=43.0
Q ss_pred EEEEeC-CEEEEEECCCcEEEEECCCCCeeEEEEeccCCCCEEEEEEcCCCCEEEEEe
Q 001455 799 ALIYYK-GLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGS 855 (1074)
Q Consensus 799 sLafS~-~~LaSGs~DGtVrIWDl~t~~~~~i~tl~gH~~~VtsLafSpdg~~LaSGS 855 (1074)
.++-.+ +.|+.+...+.|.+|++.+..+.+..+|.. -+.|..+.++..|++|+|--
T Consensus 22 ~~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE 78 (215)
T PF14761_consen 22 AVCCGGPDALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLE 78 (215)
T ss_pred eeeccCCceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEE
Confidence 344444 666666777889999999766677777754 38899999999999999853
No 412
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=84.14 E-value=7.6 Score=36.53 Aligned_cols=77 Identities=16% Similarity=0.071 Sum_probs=63.5
Q ss_pred cchhhHhHHHHHHhcCChHHHHHHHHHHHhhhhccCcchhHHHhhcCCcchhhhhhcCCchhHHHHHHHHHHHhccC
Q 001455 432 NSPRVLCGLLDVARHQNLEELISLATILVKCIQFDGQCRKYLSEFTAVAPLACLLQSGEKRAIMIALEFFHEILRIP 508 (1074)
Q Consensus 432 ~s~~~l~~l~~~~~~~~~~e~~~~~~il~~C~~~dg~cr~~ia~~~~~~~~~~ll~~~~~~~~~~a~~~l~ell~l~ 508 (1074)
...|++..|++.+..++.+-|..++..|-......-.|+.++.+.--...++++|...+...+..|+..|..|..-.
T Consensus 4 ~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~ 80 (120)
T cd00020 4 IQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGP 80 (120)
T ss_pred HHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCc
Confidence 35678899999999899888888888877666555677777777667888999999999999999999999998755
No 413
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=83.93 E-value=27 Score=37.79 Aligned_cols=169 Identities=12% Similarity=0.076 Sum_probs=90.7
Q ss_pred CCCEEEEEeCC--CeEEEEEccCCceEEEEEeccCCCeE--EEccCCCeEEEEe-cCCeEEEEeCC--CceeeeecCCCe
Q 001455 847 PGESLLSGSAD--KTIGVWQMVQRKLELIEVIATKEPIR--KLDTYGKTIFAST-QGHRMKVIDSS--RTLKDIYRSKGI 919 (1074)
Q Consensus 847 dg~~LaSGS~D--GtIrIWDl~tg~~~~~~~~~h~~~V~--s~s~dg~~L~sgS-~DgtI~VWDl~--~~l~~l~~~~~V 919 (1074)
+|..+.+.|.- ..|++||+.+|+........ ...+. .+..-+++++..+ .+|.-..+|.+ ++...+.-.+.-
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~-~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~GeG 133 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLA-PDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYEGEG 133 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecC-CccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccCCcc
Confidence 45556666543 46999999999876554444 12222 2445566776666 45667778876 344444444444
Q ss_pred EEEEEeCCEEEEEECCCcEEEEEccCCceee-eccccccccCCCCC---eEEEEEcCCceEEEEEecCCCeEEEEECCCC
Q 001455 920 KSMSVVQGKIYIGCMDSSIQELAVSNNVERE-IKAPFKSWRLQSKP---INSLVVYKDWLYSASSSVEGSNIKEWRRHRK 995 (1074)
Q Consensus 920 ~sLa~sdgkLlaGs~DgsI~IwDl~tg~~~~-i~~~~r~~~~h~~~---I~sL~~spd~i~las~S~dDgtI~IWDl~t~ 995 (1074)
+.++..+..++.+....+++.-|..+-.... +. ....+.| ++.+.+-.+..|.-.+- ...|...|.++|
T Consensus 134 WgLt~d~~~LimsdGsatL~frdP~tfa~~~~v~-----VT~~g~pv~~LNELE~VdG~lyANVw~--t~~I~rI~p~sG 206 (262)
T COG3823 134 WGLTSDDKNLIMSDGSATLQFRDPKTFAELDTVQ-----VTDDGVPVSKLNELEWVDGELYANVWQ--TTRIARIDPDSG 206 (262)
T ss_pred eeeecCCcceEeeCCceEEEecCHHHhhhcceEE-----EEECCeecccccceeeeccEEEEeeee--ecceEEEcCCCC
Confidence 5555554456666666677777765522110 00 0111222 23344444444443333 223444455555
Q ss_pred CeEEEc------------cCCCCCeEEEEEecCC-CEEEEE
Q 001455 996 PQISIA------------PEKGTTIQAMAVVEDF-IYLNYN 1023 (1074)
Q Consensus 996 ~~i~~l------------~gH~~~VtsLafSPDG-~~LaSG 1023 (1074)
+.+..+ ..|....+.+++.|++ ++++||
T Consensus 207 rV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 207 RVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred cEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 544332 2244567789999877 666665
No 414
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.76 E-value=86 Score=35.75 Aligned_cols=164 Identities=9% Similarity=0.021 Sum_probs=96.6
Q ss_pred eccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEccCCceEEEEEeccCCCe--EEEccCCCeEEEEecCCeEEEEeCCCc
Q 001455 832 VKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATKEPI--RKLDTYGKTIFASTQGHRMKVIDSSRT 909 (1074)
Q Consensus 832 l~gH~~~VtsLafSpdg~~LaSGS~DGtIrIWDl~tg~~~~~~~~~h~~~V--~s~s~dg~~L~sgS~DgtI~VWDl~~~ 909 (1074)
+.|-...|.++.|+|+.+.|++..+...-.||=..+|+.........-... ..+..++.++++--.++.+.++.+...
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDAD 160 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence 345566699999999999999999888888887777876554332221111 123345555555556777777665411
Q ss_pred --ee-----e-----eec-CCCeEEEEEe--CCEEEEEECCCcEEEEEccCCceee-e---ccccccccCCCCCeEEEEE
Q 001455 910 --LK-----D-----IYR-SKGIKSMSVV--QGKIYIGCMDSSIQELAVSNNVERE-I---KAPFKSWRLQSKPINSLVV 970 (1074)
Q Consensus 910 --l~-----~-----l~~-~~~V~sLa~s--dgkLlaGs~DgsI~IwDl~tg~~~~-i---~~~~r~~~~h~~~I~sL~~ 970 (1074)
.. . ..+ +.+.-.++|. +..++.+-....+.+|.+..+.... . ..+.......-..+.++.+
T Consensus 161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~ 240 (316)
T COG3204 161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEF 240 (316)
T ss_pred ccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecccccee
Confidence 10 1 111 4557789996 6668888888888888776433110 0 0000000011234667777
Q ss_pred cCCceEEEEEecCCCeEEEEECCCC
Q 001455 971 YKDWLYSASSSVEGSNIKEWRRHRK 995 (1074)
Q Consensus 971 spd~i~las~S~dDgtI~IWDl~t~ 995 (1074)
++....+..-+.+++.+.-.|....
T Consensus 241 ~~~~~~LLVLS~ESr~l~Evd~~G~ 265 (316)
T COG3204 241 NAITNSLLVLSDESRRLLEVDLSGE 265 (316)
T ss_pred cCCCCcEEEEecCCceEEEEecCCC
Confidence 7654444445556777777776544
No 415
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=82.11 E-value=1.2e+02 Score=36.37 Aligned_cols=138 Identities=6% Similarity=0.051 Sum_probs=78.4
Q ss_pred CEEEEEECCCcEEEEECCCCCee---EEEEeccCCCCEEEEEEcC---C-CCEEEEEeCCCeEEEEEccC--Cc------
Q 001455 805 GLLCSGFSDGSIKMWDIKKQSAM---LVWDVKEHRKAVTSFSLFE---P-GESLLSGSADKTIGVWQMVQ--RK------ 869 (1074)
Q Consensus 805 ~~LaSGs~DGtVrIWDl~t~~~~---~i~tl~gH~~~VtsLafSp---d-g~~LaSGS~DGtIrIWDl~t--g~------ 869 (1074)
+.+++||..|.++||+....... .+.+. .-..+|..+..-. . ....+..=.-+.+.||.+.. |.
T Consensus 38 d~IivGS~~G~LrIy~P~~~~~~~~~lllE~-~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~~ 116 (418)
T PF14727_consen 38 DKIIVGSYSGILRIYDPSGNEFQPEDLLLET-QLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHGNQ 116 (418)
T ss_pred cEEEEeccccEEEEEccCCCCCCCccEEEEE-ecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccCcE
Confidence 47999999999999998665432 22221 2356788777532 1 22233334566777787632 11
Q ss_pred eEEEEEeccCCCeEE-------Ec-cC-CCeEEEEecCCeEEEEeCCCceeeeecCCC--eEEEEEe--CCEEEEEECCC
Q 001455 870 LELIEVIATKEPIRK-------LD-TY-GKTIFASTQGHRMKVIDSSRTLKDIYRSKG--IKSMSVV--QGKIYIGCMDS 936 (1074)
Q Consensus 870 ~~~~~~~~h~~~V~s-------~s-~d-g~~L~sgS~DgtI~VWDl~~~l~~l~~~~~--V~sLa~s--dgkLlaGs~Dg 936 (1074)
........|.-+-.+ |- .. ...+++=+.||.+.+|+-+...-...-... ...+.|. .+.+++++.+.
T Consensus 117 ~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~llPgPl~Y~~~tDsfvt~sss~ 196 (418)
T PF14727_consen 117 YQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDFLLPGPLCYCPRTDSFVTASSSW 196 (418)
T ss_pred EEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCCCCCcCeEEeecCCEEEEecCce
Confidence 122222233222221 11 22 357888899999999998854432222111 2234443 55677777777
Q ss_pred cEEEEEc
Q 001455 937 SIQELAV 943 (1074)
Q Consensus 937 sI~IwDl 943 (1074)
.+..|..
T Consensus 197 ~l~~Yky 203 (418)
T PF14727_consen 197 TLECYKY 203 (418)
T ss_pred eEEEecH
Confidence 8887765
No 416
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=81.26 E-value=1.1e+02 Score=35.05 Aligned_cols=149 Identities=12% Similarity=0.105 Sum_probs=92.9
Q ss_pred CcEEEEEEeCCEEEEEECCCcEEEEECCCCCee-EEEEeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEccCCce-EE
Q 001455 795 GAVTALIYYKGLLCSGFSDGSIKMWDIKKQSAM-LVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKL-EL 872 (1074)
Q Consensus 795 ~~VtsLafS~~~LaSGs~DGtVrIWDl~t~~~~-~i~tl~gH~~~VtsLafSpdg~~LaSGS~DGtIrIWDl~tg~~-~~ 872 (1074)
+--.++..++++...+..|.-.-+.|+.+.+.. +...+......-+.++. .|++-+.+..|+-+.+-|+..... ..
T Consensus 129 gyaygv~vsGn~aYVadlddgfLivdvsdpssP~lagrya~~~~d~~~v~I--SGn~AYvA~~d~GL~ivDVSnp~sPvl 206 (370)
T COG5276 129 GYAYGVYVSGNYAYVADLDDGFLIVDVSDPSSPQLAGRYALPGGDTHDVAI--SGNYAYVAWRDGGLTIVDVSNPHSPVL 206 (370)
T ss_pred ceEEEEEecCCEEEEeeccCcEEEEECCCCCCceeeeeeccCCCCceeEEE--ecCeEEEEEeCCCeEEEEccCCCCCeE
Confidence 556677778999888886666778898876432 33334444444466666 456666677888899999976432 22
Q ss_pred EEEeccCCCeEEEccCCCeEEEEecCCeEEEEeCCCce--eee--ecCCC---eEEEEEeCCEEEEEECCCcEEEEEccC
Q 001455 873 IEVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSSRTL--KDI--YRSKG---IKSMSVVQGKIYIGCMDSSIQELAVSN 945 (1074)
Q Consensus 873 ~~~~~h~~~V~s~s~dg~~L~sgS~DgtI~VWDl~~~l--~~l--~~~~~---V~sLa~sdgkLlaGs~DgsI~IwDl~t 945 (1074)
.........+.+.++.+++....-.+..+.+-|.+... ..+ ..... +..+.+++...+....+.-+.+-|..+
T Consensus 207 i~~~n~g~g~~sv~vsdnr~y~vvy~egvlivd~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~idisn 286 (370)
T COG5276 207 IGSYNTGPGTYSVSVSDNRAYLVVYDEGVLIVDVSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPIIDISN 286 (370)
T ss_pred EEEEecCCceEEEEecCCeeEEEEcccceEEEecCCCCCceEeeccccCCcccccceecccceeeeeccccCceeEeccC
Confidence 22223333667777777777777777777788877432 111 11222 333455566666666677777777766
No 417
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=81.07 E-value=1.2e+02 Score=35.58 Aligned_cols=125 Identities=14% Similarity=0.098 Sum_probs=59.9
Q ss_pred cEEEEEccCCceeeeccccccccCCCCCeEEEEEcCCceEEEEEecCC--CeEEEE--E--CCCCCeEEE--ccC----C
Q 001455 937 SIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEG--SNIKEW--R--RHRKPQISI--APE----K 1004 (1074)
Q Consensus 937 sI~IwDl~tg~~~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S~dD--gtI~IW--D--l~t~~~i~~--l~g----H 1004 (1074)
.+.+||..++........ ......-.++....+.++++++...+ .+..+| + ..+.+.... +.. +
T Consensus 190 ~v~~YD~~t~~W~~~~~~----p~~~~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~ 265 (376)
T PRK14131 190 EVLSYDPSTNQWKNAGES----PFLGTAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPDLPPAPGGS 265 (376)
T ss_pred eEEEEECCCCeeeECCcC----CCCCCCcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecCCCCCCCcCC
Confidence 588899888665433211 11112233556667777777654221 223333 2 222222211 111 0
Q ss_pred --CCCeEEEEEecCCCEEEEEECCC----------------------cEEEEECCCCcEE--EEEeCC-CCeEEEEEcCC
Q 001455 1005 --GTTIQAMAVVEDFIYLNYNSSAS----------------------SLQIWLRGTQQKV--GRISAG-SKITSLLTAND 1057 (1074)
Q Consensus 1005 --~~~VtsLafSPDG~~LaSGS~DG----------------------tIrIWDl~tg~~l--~tL~~h-s~VtsLa~dg~ 1057 (1074)
.......+...++++++.|+.+. .+.+||..+.+.. ..+... ....++..+++
T Consensus 266 ~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~r~~~~av~~~~~ 345 (376)
T PRK14131 266 SQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVGELPQGLAYGVSVSWNNG 345 (376)
T ss_pred cCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccCcCCCCccceEEEEeCCE
Confidence 00011112335677888887541 3457887765542 222111 11345677888
Q ss_pred EEEEEECC
Q 001455 1058 IVLCGTET 1065 (1074)
Q Consensus 1058 ~LaSGs~D 1065 (1074)
+++.||.+
T Consensus 346 iyv~GG~~ 353 (376)
T PRK14131 346 VLLIGGET 353 (376)
T ss_pred EEEEcCCC
Confidence 88888864
No 418
>PRK09687 putative lyase; Provisional
Probab=80.33 E-value=41 Score=38.12 Aligned_cols=69 Identities=9% Similarity=0.075 Sum_probs=51.8
Q ss_pred CchhHHHHHHHHhhcccchhhHHHHHHHhhhccccCCCCCCcchHHHHHHHHHHHhccCChhhHHHHHHHHHhcC
Q 001455 523 GNINILHILKLSLQQLQSDYQLLAANLLLQLDTLENTTGKSVFTEEAMQVILKAVASEESSTMQLLSSFILSNIG 597 (1074)
Q Consensus 523 ~~~~~mh~ll~~lq~~~~~~~~~~a~lllqldll~~p~~~s~yreea~~~~~~~l~~~~~~~~q~~~~~~l~~l~ 597 (1074)
|.-.+.-.+.-.++...+..|-.+|..|-|| ++|... +++|+..|...+.....+.++..|+.+|-.++
T Consensus 51 ~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~l---g~~~~~---~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~ 119 (280)
T PRK09687 51 GGQDVFRLAIELCSSKNPIERDIGADILSQL---GMAKRC---QDNVFNILNNLALEDKSACVRASAINATGHRC 119 (280)
T ss_pred CcchHHHHHHHHHhCCCHHHHHHHHHHHHhc---CCCccc---hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccc
Confidence 4444444555567888999999999999885 444332 78999999988777778888998888886654
No 419
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=79.38 E-value=79 Score=38.47 Aligned_cols=215 Identities=13% Similarity=0.198 Sum_probs=109.0
Q ss_pred hhHHHHHHHHHhhhhhccCccccchhhhHHHHHHHHHhccCCCCceeccchHHHHHHHHHHHhcCcchhhhhhhHHhhHh
Q 001455 248 KSELLEIIEKAISSLFFSGDLRKCNKDYVVEVTTLYKMLNSKTGVKYDMLQDVILEQLLTAISASKEETVIRASVSILTT 327 (1074)
Q Consensus 248 ~~~~~~~l~~ai~~l~~s~~l~~~e~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~e~~~~s~~~~v~~~~v~il~~ 327 (1074)
+.++...+-+.|.++..+.+- .-=+.|+..+.++++. +|. +.++.+++.+...| .+.++.|+.+++.+|.+
T Consensus 108 ~~~~~~~l~~~v~~ll~~~~~-~VRk~A~~~l~~i~~~---~p~----~~~~~~~~~l~~lL-~d~~~~V~~~a~~~l~~ 178 (526)
T PF01602_consen 108 TPEMAEPLIPDVIKLLSDPSP-YVRKKAALALLKIYRK---DPD----LVEDELIPKLKQLL-SDKDPSVVSAALSLLSE 178 (526)
T ss_dssp SHHHHHHHHHHHHHHHHSSSH-HHHHHHHHHHHHHHHH---CHC----CHHGGHHHHHHHHT-THSSHHHHHHHHHHHHH
T ss_pred ccchhhHHHHHHHHHhcCCch-HHHHHHHHHHHHHhcc---CHH----HHHHHHHHHHhhhc-cCCcchhHHHHHHHHHH
Confidence 678888899999988776654 3334577778888765 222 22333555555555 88899999999999999
Q ss_pred hhhcchhhhhhhhhcCCCchHHHHHHhh--cc--h-hhHHHHHhc---CCChhhhhh-ccchhHHHHHHhccccccCccc
Q 001455 328 IILANESVIEDIKKKGLRLSDLATALKR--NV--P-EAAILIYLI---KPSPTEIKT-LELLPTLVEVICTSKLYKGKLE 398 (1074)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~lk~--~~--~-~a~vl~~l~---~~~~~~~~~-~~~~~~l~~v~~~~~~~~~~~~ 398 (1074)
+ ..++.... .=+..+...|.+ +. | --..+++++ -|...+... .++++.+...+.+.+..
T Consensus 179 i-~~~~~~~~------~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~~~~i~~l~~~l~s~~~~----- 246 (526)
T PF01602_consen 179 I-KCNDDSYK------SLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADKNRIIEPLLNLLQSSSPS----- 246 (526)
T ss_dssp H-HCTHHHHT------THHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHHHHHHHHHHHHHHHHHHH-----
T ss_pred H-ccCcchhh------hhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhHHHHHHHHHHHhhccccH-----
Confidence 8 22222211 111122222221 11 1 111222222 233333331 25677777777632211
Q ss_pred ccccCchhhHHH-HHHHHhhccccccchhhhhhhcchhhHhHHHHHHhcCChHHHHHHHHHHHhhhhccCcchhHHHhhc
Q 001455 399 SVRLTPPAASLM-IIEVLVTAFDYATNNMHLAAINSPRVLCGLLDVARHQNLEELISLATILVKCIQFDGQCRKYLSEFT 477 (1074)
Q Consensus 399 ~~~~~p~~aa~~-~l~~ll~~~d~~~~~~~~~~~~s~~~l~~l~~~~~~~~~~e~~~~~~il~~C~~~dg~cr~~ia~~~ 477 (1074)
-++ .+.-++ .... +.. .--.++..|.+-+...+.+-|..+...|..-.+.. ..++.
T Consensus 247 ---------V~~e~~~~i~-~l~~--~~~-----~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~---~~~v~--- 303 (526)
T PF01602_consen 247 ---------VVYEAIRLII-KLSP--SPE-----LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSN---PPAVF--- 303 (526)
T ss_dssp ---------HHHHHHHHHH-HHSS--SHH-----HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHC---HHHHG---
T ss_pred ---------HHHHHHHHHH-Hhhc--chH-----HHHhhHHHHHHHhhcccchhehhHHHHHHHhhccc---chhhh---
Confidence 111 111111 1110 111 11223444545555566666666666555444443 23333
Q ss_pred CCcchhhhhh-cCCchhHHHHHHHHHHHhc
Q 001455 478 AVAPLACLLQ-SGEKRAIMIALEFFHEILR 506 (1074)
Q Consensus 478 ~~~~~~~ll~-~~~~~~~~~a~~~l~ell~ 506 (1074)
+....+..+. ..+..-|..|+.+|..|..
T Consensus 304 ~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~ 333 (526)
T PF01602_consen 304 NQSLILFFLLYDDDPSIRKKALDLLYKLAN 333 (526)
T ss_dssp THHHHHHHHHCSSSHHHHHHHHHHHHHH--
T ss_pred hhhhhhheecCCCChhHHHHHHHHHhhccc
Confidence 4444455555 6677778888888887774
No 420
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.96 E-value=1.9e+02 Score=37.18 Aligned_cols=322 Identities=14% Similarity=0.126 Sum_probs=177.8
Q ss_pred CCchhHHHHHHHHHhhhhhccCccccchhhhHHHHHHHHHhccCCCCceeccchHHHHHHHHHHHhcCcchhhhhhhHHh
Q 001455 245 KDAKSELLEIIEKAISSLFFSGDLRKCNKDYVVEVTTLYKMLNSKTGVKYDMLQDVILEQLLTAISASKEETVIRASVSI 324 (1074)
Q Consensus 245 ~~~~~~~~~~l~~ai~~l~~s~~l~~~e~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~e~~~~s~~~~v~~~~v~i 324 (1074)
+-...|+..+|.+-|.+|+..-+-- =-|+|++--.++-+.. |.... -|+..+ -.+..+++..|+=+.+.|
T Consensus 133 ~i~s~EmardlapeVe~Ll~~~~~~-irKKA~Lca~r~irK~---P~l~e-----~f~~~~-~~lL~ek~hGVL~~~l~l 202 (866)
T KOG1062|consen 133 NICSPEMARDLAPEVERLLQHRDPY-IRKKAALCAVRFIRKV---PDLVE-----HFVIAF-RKLLCEKHHGVLIAGLHL 202 (866)
T ss_pred ccCCHHHhHHhhHHHHHHHhCCCHH-HHHHHHHHHHHHHHcC---chHHH-----HhhHHH-HHHHhhcCCceeeeHHHH
Confidence 3445678888888888886542211 1124444444443211 11111 122222 234567889999999999
Q ss_pred hHhhhhcchhhhhhhhhcCCCchHHHHHHhh----cch-hhHHHHHhcCCChhhhhhccchhHHHHHHhccccccCcccc
Q 001455 325 LTTIILANESVIEDIKKKGLRLSDLATALKR----NVP-EAAILIYLIKPSPTEIKTLELLPTLVEVICTSKLYKGKLES 399 (1074)
Q Consensus 325 l~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~----~~~-~a~vl~~l~~~~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~ 399 (1074)
+.++...+..++..-.+ -+..|+..||+ +.+ |== . .-|--.+-|+.-+ -+++++..++..
T Consensus 203 ~~e~c~~~~~~l~~fr~---l~~~lV~iLk~l~~~~yspeyd-v-~gi~dPFLQi~iL----rlLriLGq~d~d------ 267 (866)
T KOG1062|consen 203 ITELCKISPDALSYFRD---LVPSLVKILKQLTNSGYSPEYD-V-HGISDPFLQIRIL----RLLRILGQNDAD------ 267 (866)
T ss_pred HHHHHhcCHHHHHHHHH---HHHHHHHHHHHHhcCCCCCccC-c-cCCCchHHHHHHH----HHHHHhcCCCcc------
Confidence 99999999988888766 56666776766 122 100 0 1111112222221 245667665432
Q ss_pred cccCchhhHHH-HHHHHhhccccccchhh------hhhhcchh---hHhHH----HHHH-hcCChHHHHHHHHHHHhhhh
Q 001455 400 VRLTPPAASLM-IIEVLVTAFDYATNNMH------LAAINSPR---VLCGL----LDVA-RHQNLEELISLATILVKCIQ 464 (1074)
Q Consensus 400 ~~~~p~~aa~~-~l~~ll~~~d~~~~~~~------~~~~~s~~---~l~~l----~~~~-~~~~~~e~~~~~~il~~C~~ 464 (1074)
-...+. +|.|+.+--|.++|.-| +.+++++. +|.-| +.+| -+.+---|--+..-|++=|+
T Consensus 268 -----aSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~ 342 (866)
T KOG1062|consen 268 -----ASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQ 342 (866)
T ss_pred -----HHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhc
Confidence 122333 88999888888888855 44554321 11110 1111 11122223333444566666
Q ss_pred ccCcchhHHHhhcCCcchhhhhhcCCchhHHHHHHHHHHHhccC------------------------------------
Q 001455 465 FDGQCRKYLSEFTAVAPLACLLQSGEKRAIMIALEFFHEILRIP------------------------------------ 508 (1074)
Q Consensus 465 ~dg~cr~~ia~~~~~~~~~~ll~~~~~~~~~~a~~~l~ell~l~------------------------------------ 508 (1074)
.|-+- +|+ +..-++|-|.--+..-|..|++|++-|+.-+
T Consensus 343 ~d~~a----vqr-Hr~tIleCL~DpD~SIkrralELs~~lvn~~Nv~~mv~eLl~fL~~~d~~~k~~~as~I~~laEkfa 417 (866)
T KOG1062|consen 343 QDPTA----VQR-HRSTILECLKDPDVSIKRRALELSYALVNESNVRVMVKELLEFLESSDEDFKADIASKIAELAEKFA 417 (866)
T ss_pred CCcHH----HHH-HHHHHHHHhcCCcHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcC
Confidence 66431 111 1223344445556666666777666655432
Q ss_pred ---chhhHHHHHHhhccCch---hHHHHHHHHhhcccchh----------------------hHHHHHHHh----hhccc
Q 001455 509 ---RSSAIDLLQRIHKEGNI---NILHILKLSLQQLQSDY----------------------QLLAANLLL----QLDTL 556 (1074)
Q Consensus 509 ---r~~~~~~l~~~~~~~~~---~~mh~ll~~lq~~~~~~----------------------~~~~a~lll----qldll 556 (1074)
|+.+..+++.++..|.| .+.|.|++-+-.+++|. +|++-++.- .=|||
T Consensus 418 P~k~W~idtml~Vl~~aG~~V~~dv~~nll~LIa~~~~e~~~y~~~rLy~a~~~~~~~~is~e~l~qVa~W~IGEYGdll 497 (866)
T KOG1062|consen 418 PDKRWHIDTMLKVLKTAGDFVNDDVVNNLLRLIANAFQELHEYAVLRLYLALSEDTLLDISQEPLLQVASWCIGEYGDLL 497 (866)
T ss_pred CcchhHHHHHHHHHHhcccccchhhHHHHHHHHhcCCcchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhhhhhHHh
Confidence 45566677777777765 56888888888884432 222111110 12445
Q ss_pred cC------CCCCCcchHHHHHHHHHHHhccC-ChhhHHHHHHHHHhcCcccccc
Q 001455 557 EN------TTGKSVFTEEAMQVILKAVASEE-SSTMQLLSSFILSNIGGTFSWT 603 (1074)
Q Consensus 557 ~~------p~~~s~yreea~~~~~~~l~~~~-~~~~q~~~~~~l~~l~g~fs~s 603 (1074)
.+ |.+. =-+|+++.|-..+.+.. .+.+-.-+--||+-|.-||-++
T Consensus 498 l~~~~~~~p~~v--tesdivd~l~~v~~~~~s~~~tk~yal~Al~KLSsr~~s~ 549 (866)
T KOG1062|consen 498 LDGANEEEPIKV--TESDIVDKLEKVLMSHSSDSTTKGYALTALLKLSSRFHSS 549 (866)
T ss_pred hcCccccCCCcC--CHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhcccc
Confidence 43 4443 34788899888888873 5777777888899888888776
No 421
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=78.22 E-value=1.2e+02 Score=33.85 Aligned_cols=191 Identities=9% Similarity=0.028 Sum_probs=96.1
Q ss_pred CCCeEE--EccCCCeEEEE-ecCCeEEEEeCCCce-eeee--cCCCeEEEEEe-CCEEEEEE-CCCcEEEEEccCCce-e
Q 001455 879 KEPIRK--LDTYGKTIFAS-TQGHRMKVIDSSRTL-KDIY--RSKGIKSMSVV-QGKIYIGC-MDSSIQELAVSNNVE-R 949 (1074)
Q Consensus 879 ~~~V~s--~s~dg~~L~sg-S~DgtI~VWDl~~~l-~~l~--~~~~V~sLa~s-dgkLlaGs-~DgsI~IwDl~tg~~-~ 949 (1074)
...+.. +.++.+.+++. ...+.|..++..+.+ ..+. +.+..-.+++. ++.++... .++.+.++++..... .
T Consensus 21 ~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~ 100 (248)
T PF06977_consen 21 LDELSGLTYNPDTGTLFAVQDEPGEIYELSLDGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSL 100 (248)
T ss_dssp -S-EEEEEEETTTTEEEEEETTTTEEEEEETT--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT-
T ss_pred cCCccccEEcCCCCeEEEEECCCCEEEEEcCCCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEecccccc
Confidence 333554 45665655554 466788888877433 2222 23557788887 77766655 488899998843221 0
Q ss_pred ee----ccccccccCCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCC---CCeE--EE------ccCCCCCeEEEEEe
Q 001455 950 EI----KAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHR---KPQI--SI------APEKGTTIQAMAVV 1014 (1074)
Q Consensus 950 ~i----~~~~r~~~~h~~~I~sL~~spd~i~las~S~dDgtI~IWDl~t---~~~i--~~------l~gH~~~VtsLafS 1014 (1074)
.. .........++..+-.+++.+....++... +.....+|.... .... .. .......+.++.++
T Consensus 101 ~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~k-E~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~ 179 (248)
T PF06977_consen 101 DRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAK-ERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYD 179 (248)
T ss_dssp -EEEEEEEE---S---SS--EEEEEETTTTEEEEEE-ESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEE
T ss_pred chhhceEEecccccCCCcceEEEEEcCCCCEEEEEe-CCCChhhEEEccccCccceeeccccccccccceeccccceEEc
Confidence 00 000111123456688999988644444333 444455555432 1111 11 11233468899999
Q ss_pred cC-CCEEEEEECCCcEEEEECCCCcEEEEEeCCC----------CeEEEEEcCC-EEEEEECCCcEEEE
Q 001455 1015 ED-FIYLNYNSSASSLQIWLRGTQQKVGRISAGS----------KITSLLTAND-IVLCGTETGLIKGW 1071 (1074)
Q Consensus 1015 PD-G~~LaSGS~DGtIrIWDl~tg~~l~tL~~hs----------~VtsLa~dg~-~LaSGs~DG~IrIW 1071 (1074)
|. |.+++-...+..|..+| .+|+.+..+.-.. +--.++++++ .|+..+.-+..++|
T Consensus 180 p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsEpNlfy~f 247 (248)
T PF06977_consen 180 PRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSEPNLFYRF 247 (248)
T ss_dssp TTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEETTTEEEEE
T ss_pred CCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEcCCceEEEe
Confidence 85 55666677888899999 7778776665321 2556888743 56666677666655
No 422
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=78.20 E-value=1.2e+02 Score=33.76 Aligned_cols=141 Identities=13% Similarity=0.114 Sum_probs=82.2
Q ss_pred EEccCCCeEEEEe---cCCeEEEEeCCCceeeeecCCCeEEEEEe-CCEEEEE-ECCCcEEEEE-ccCCceeeecccccc
Q 001455 884 KLDTYGKTIFAST---QGHRMKVIDSSRTLKDIYRSKGIKSMSVV-QGKIYIG-CMDSSIQELA-VSNNVEREIKAPFKS 957 (1074)
Q Consensus 884 s~s~dg~~L~sgS---~DgtI~VWDl~~~l~~l~~~~~V~sLa~s-dgkLlaG-s~DgsI~IwD-l~tg~~~~i~~~~r~ 957 (1074)
.++++++.++... ....+.++..............+..-.|. ++.+++. ..+...+++. ...+........
T Consensus 30 AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~~v~--- 106 (253)
T PF10647_consen 30 AVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPVEVD--- 106 (253)
T ss_pred EECCCCCeEEEEEEcCCCCEEEEEcCCCcceeeccCCccccccccCCCCEEEEEcCCCceEEEEecCCCcceeEEec---
Confidence 4788888777766 33467777766555554444466666675 6776663 4445555553 333332222111
Q ss_pred ccCCCCCeEEEEEcCCceEEEEEec--CCCeEEEEEC---CCC------CeEEEccCCCCCeEEEEEecCCCEEEEEECC
Q 001455 958 WRLQSKPINSLVVYKDWLYSASSSV--EGSNIKEWRR---HRK------PQISIAPEKGTTIQAMAVVEDFIYLNYNSSA 1026 (1074)
Q Consensus 958 ~~~h~~~I~sL~~spd~i~las~S~--dDgtI~IWDl---~t~------~~i~~l~gH~~~VtsLafSPDG~~LaSGS~D 1026 (1074)
+......|..+.++|||..++.... +++.+.+--+ ..+ ............++++.|.+++.+++.+...
T Consensus 107 ~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~~~ 186 (253)
T PF10647_consen 107 WPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLGRSA 186 (253)
T ss_pred ccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEEEeCCC
Confidence 1111128999999999987765542 3456655542 122 1122222345679999999999887776644
Q ss_pred C
Q 001455 1027 S 1027 (1074)
Q Consensus 1027 G 1027 (1074)
+
T Consensus 187 ~ 187 (253)
T PF10647_consen 187 G 187 (253)
T ss_pred C
Confidence 3
No 423
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=78.19 E-value=2.4 Score=53.45 Aligned_cols=100 Identities=15% Similarity=0.169 Sum_probs=60.8
Q ss_pred CCceEEEEEecCCCeEEEEECCCCCeEEEccCCCCCeEEEE-----------EecCCCEEEEEECCCcEEEEECC-C---
Q 001455 972 KDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMA-----------VVEDFIYLNYNSSASSLQIWLRG-T--- 1036 (1074)
Q Consensus 972 pd~i~las~S~dDgtI~IWDl~t~~~i~~l~gH~~~VtsLa-----------fSPDG~~LaSGS~DGtIrIWDl~-t--- 1036 (1074)
++..++.. +-+|++|++.+.+.... ..+.+|+.+++.++ +||||..++.++.||.++.|... +
T Consensus 193 ~~~~~ic~-~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~ 270 (1283)
T KOG1916|consen 193 VNKVYICY-GLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKI 270 (1283)
T ss_pred cccceeee-ccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccc
Confidence 34444443 34677887766554332 44556877666554 58999999999999999998742 2
Q ss_pred -CcEEEEEeCCC--CeEEEEEc---------CC--EEEEEEC-CCcEEEEec
Q 001455 1037 -QQKVGRISAGS--KITSLLTA---------ND--IVLCGTE-TGLIKGWIP 1073 (1074)
Q Consensus 1037 -g~~l~tL~~hs--~VtsLa~d---------g~--~LaSGs~-DG~IrIWdi 1073 (1074)
-.+++.++.|. +-.|+.++ |. +++++++ +.-+++|..
T Consensus 271 ~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~ 322 (1283)
T KOG1916|consen 271 VHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAE 322 (1283)
T ss_pred cHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeec
Confidence 33456666663 33333244 22 4445444 445888864
No 424
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=77.67 E-value=1.1e+02 Score=34.78 Aligned_cols=105 Identities=7% Similarity=0.007 Sum_probs=49.8
Q ss_pred EeCCEEEEEECCC-----cEEEEECCCCCee-EEEEeccCCCCE--EEEEEcCCCCEEEEEeC-----CCeEEEEEccCC
Q 001455 802 YYKGLLCSGFSDG-----SIKMWDIKKQSAM-LVWDVKEHRKAV--TSFSLFEPGESLLSGSA-----DKTIGVWQMVQR 868 (1074)
Q Consensus 802 fS~~~LaSGs~DG-----tVrIWDl~t~~~~-~i~tl~gH~~~V--tsLafSpdg~~LaSGS~-----DGtIrIWDl~tg 868 (1074)
+.+..++.|+.++ .+..+|+.+.+.. ....+..-..+. .+++. -++...+.|+. ...+..||+.+.
T Consensus 71 ~~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~-~~~~iYv~GG~~~~~~~~~v~~yd~~~~ 149 (323)
T TIGR03548 71 VENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACY-KDGTLYVGGGNRNGKPSNKSYLFNLETQ 149 (323)
T ss_pred ECCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEE-ECCEEEEEeCcCCCccCceEEEEcCCCC
Confidence 3355566666543 5666777665431 011111111111 12222 24555566664 235788898877
Q ss_pred ceEEEEEecc--CCCeEEEccCCCeEEEEecCC----eEEEEeCC
Q 001455 869 KLELIEVIAT--KEPIRKLDTYGKTIFASTQGH----RMKVIDSS 907 (1074)
Q Consensus 869 ~~~~~~~~~h--~~~V~s~s~dg~~L~sgS~Dg----tI~VWDl~ 907 (1074)
+......... .........++...+.|+.++ .+.+||+.
T Consensus 150 ~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~ 194 (323)
T TIGR03548 150 EWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPK 194 (323)
T ss_pred CeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecC
Confidence 6543221111 111122344566666666553 35678876
No 425
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.48 E-value=29 Score=42.36 Aligned_cols=250 Identities=16% Similarity=0.208 Sum_probs=159.9
Q ss_pred cchhhhccCCCCchhHHHHHHHHHhhhhhccCccccchhhhHHHHHHHHHhccCCCCceeccchHHHHHHHHHHHhcCcc
Q 001455 235 KFNEECLNGEKDAKSELLEIIEKAISSLFFSGDLRKCNKDYVVEVTTLYKMLNSKTGVKYDMLQDVILEQLLTAISASKE 314 (1074)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~l~~ai~~l~~s~~l~~~e~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~e~~~~s~~ 314 (1074)
-++.+|.+..-.|..+.+..+=++++.|-.+.+-.=+. +|.-.|.-+ ..|.+.-.-...+.-++-.|++.|-.+ +
T Consensus 218 ~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~-Da~WAlsyL---sdg~ne~iq~vi~~gvv~~LV~lL~~~-~ 292 (514)
T KOG0166|consen 218 TLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLT-DACWALSYL---TDGSNEKIQMVIDAGVVPRLVDLLGHS-S 292 (514)
T ss_pred HHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHH-HHHHHHHHH---hcCChHHHHHHHHccchHHHHHHHcCC-C
Confidence 34667777766777788889999999996666554443 444333322 223222222355666666676665544 4
Q ss_pred hhhhhhhHHhhHhhhhcchhhhhhhhhcCCCchHHHHHHhhcchhhHHHHHhcCCChhhhhhccchhHHHHHHhcccccc
Q 001455 315 ETVIRASVSILTTIILANESVIEDIKKKGLRLSDLATALKRNVPEAAILIYLIKPSPTEIKTLELLPTLVEVICTSKLYK 394 (1074)
Q Consensus 315 ~~v~~~~v~il~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~a~vl~~l~~~~~~~~~~~~~~~~l~~v~~~~~~~~ 394 (1074)
..|+-.++.-+.-+++.++.-.|.+.+. ..+|.|...+.++.+..
T Consensus 293 ~~v~~PaLRaiGNIvtG~d~QTq~vi~~-----------------------------------~~L~~l~~ll~~s~~~~ 337 (514)
T KOG0166|consen 293 PKVVTPALRAIGNIVTGSDEQTQVVINS-----------------------------------GALPVLSNLLSSSPKES 337 (514)
T ss_pred cccccHHHhhccceeeccHHHHHHHHhc-----------------------------------ChHHHHHHHhccCcchh
Confidence 4455455555566777777776666443 56677777776443221
Q ss_pred CcccccccCchhhHHHHHHHHhhccccccchhhhhhhcchhhHhHHHHHHhcCChHHHHHHHHHHH-hhhhccCcchhHH
Q 001455 395 GKLESVRLTPPAASLMIIEVLVTAFDYATNNMHLAAINSPRVLCGLLDVARHQNLEELISLATILV-KCIQFDGQCRKYL 473 (1074)
Q Consensus 395 ~~~~~~~~~p~~aa~~~l~~ll~~~d~~~~~~~~~~~~s~~~l~~l~~~~~~~~~~e~~~~~~il~-~C~~~dg~cr~~i 473 (1074)
- |+.|..++-++-. -|.+++.+++.-++++.|++.++.++.+=|..|+=.+. .|.-.+-.=-.|+
T Consensus 338 i---------kkEAcW~iSNItA-----G~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~~qi~yL 403 (514)
T KOG0166|consen 338 I---------KKEACWTISNITA-----GNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGTPEQIKYL 403 (514)
T ss_pred H---------HHHHHHHHHHhhc-----CCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCCHHHHHHH
Confidence 1 3445555555533 35679999999999999999999999877666665554 6666665556677
Q ss_pred HhhcCCcchhhhhhcCCchhHHHHHHHHHHHhccCchhh----HHHHHHhhccCchhHHHHHHHHhhcccchh
Q 001455 474 SEFTAVAPLACLLQSGEKRAIMIALEFFHEILRIPRSSA----IDLLQRIHKEGNINILHILKLSLQQLQSDY 542 (1074)
Q Consensus 474 a~~~~~~~~~~ll~~~~~~~~~~a~~~l~ell~l~r~~~----~~~l~~~~~~~~~~~mh~ll~~lq~~~~~~ 542 (1074)
.+.-=..||-.||-..+.+--..++.=|.=|++.-.-.. +..=..|-+.|+++-|+. ||....|+
T Consensus 404 v~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~~~~~~~n~~~~~IEe~ggldkiE~----LQ~hen~~ 472 (514)
T KOG0166|consen 404 VEQGIIKPLCDLLTCPDVKIILVALDGLENILKVGEAEKNRGTNPLAIMIEEAGGLDKIEN----LQSHENEE 472 (514)
T ss_pred HHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHccChhHHHH----hhccccHH
Confidence 777789999999977777766667777777776665332 333333444499888875 45555544
No 426
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=76.91 E-value=1.5e+02 Score=34.18 Aligned_cols=228 Identities=12% Similarity=0.049 Sum_probs=105.3
Q ss_pred cEEEEEEeCCEEEEEECCCcEEEEECCCCCe-eEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEccC-CceEEE
Q 001455 796 AVTALIYYKGLLCSGFSDGSIKMWDIKKQSA-MLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQ-RKLELI 873 (1074)
Q Consensus 796 ~VtsLafS~~~LaSGs~DGtVrIWDl~t~~~-~~i~tl~gH~~~VtsLafSpdg~~LaSGS~DGtIrIWDl~t-g~~~~~ 873 (1074)
...+|.|.++....++..|.| +...+.++. ..+..-..-.+....+....++...+ ++..|. ||.... |+.-..
T Consensus 63 ~l~~I~f~~~~g~ivG~~g~l-l~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l-~~~~G~--iy~T~DgG~tW~~ 138 (302)
T PF14870_consen 63 HLNSISFDGNEGWIVGEPGLL-LHTTDGGKTWERVPLSSKLPGSPFGITALGDGSAEL-AGDRGA--IYRTTDGGKTWQA 138 (302)
T ss_dssp EEEEEEEETTEEEEEEETTEE-EEESSTTSS-EE----TT-SS-EEEEEEEETTEEEE-EETT----EEEESSTTSSEEE
T ss_pred eEEEEEecCCceEEEcCCceE-EEecCCCCCcEEeecCCCCCCCeeEEEEcCCCcEEE-EcCCCc--EEEeCCCCCCeeE
Confidence 356777874433334455543 344444432 11111011123334444444443333 344554 343333 332222
Q ss_pred EEeccCCCeEEE--ccCCCeEEEEecCCeEEEEeCCCc-eee--eecCCCeEEEEEe-CCEEEEEECCCcEEEEEccCCc
Q 001455 874 EVIATKEPIRKL--DTYGKTIFASTQGHRMKVIDSSRT-LKD--IYRSKGIKSMSVV-QGKIYIGCMDSSIQELAVSNNV 947 (1074)
Q Consensus 874 ~~~~h~~~V~s~--s~dg~~L~sgS~DgtI~VWDl~~~-l~~--l~~~~~V~sLa~s-dgkLlaGs~DgsI~IwDl~tg~ 947 (1074)
........+..+ .++|.+++++.......-||.... -.. ......|..|.|. ++.++.....|.|+.=+.....
T Consensus 139 ~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~~Gg~~~~s~~~~~~ 218 (302)
T PF14870_consen 139 VVSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLARGGQIQFSDDPDDG 218 (302)
T ss_dssp EE-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEETTTEEEEEE-TTEE
T ss_pred cccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEeCCcEEEEccCCCCc
Confidence 333444555553 578888888877777788887642 222 2236779999997 8888777789999887722211
Q ss_pred eeeeccccccccCCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEcc---CCCCCeEEEEEecCCCEEEEEE
Q 001455 948 EREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAP---EKGTTIQAMAVVEDFIYLNYNS 1024 (1074)
Q Consensus 948 ~~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S~dDgtI~IWDl~t~~~i~~l~---gH~~~VtsLafSPDG~~LaSGS 1024 (1074)
.. -..+..........+..+++.++...-++++ +| ..+...+.|+.-+... .-...++.+.|.++.+-++.|
T Consensus 219 ~~-w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg--~G-~l~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG- 293 (302)
T PF14870_consen 219 ET-WSEPIIPIKTNGYGILDLAYRPPNEIWAVGG--SG-TLLVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLG- 293 (302)
T ss_dssp EE-E---B-TTSS--S-EEEEEESSSS-EEEEES--TT--EEEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE--
T ss_pred cc-cccccCCcccCceeeEEEEecCCCCEEEEeC--Cc-cEEEeCCCCccceECccccCCCCceEEEEEcCCCceEEEC-
Confidence 11 0111111122344578899998766666554 34 3344555555443332 234568899998776666665
Q ss_pred CCCcEEEE
Q 001455 1025 SASSLQIW 1032 (1074)
Q Consensus 1025 ~DGtIrIW 1032 (1074)
.+|.+--|
T Consensus 294 ~~G~ll~~ 301 (302)
T PF14870_consen 294 QDGVLLRY 301 (302)
T ss_dssp STTEEEEE
T ss_pred CCcEEEEe
Confidence 47776544
No 427
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=76.85 E-value=79 Score=41.78 Aligned_cols=303 Identities=17% Similarity=0.130 Sum_probs=163.7
Q ss_pred chhhhccCCCCchhHHHHHHHHHhhhhhccCccccchhhhHHHHHHHHHhccCCCCceeccchHHHHHHHHHHHhcCcch
Q 001455 236 FNEECLNGEKDAKSELLEIIEKAISSLFFSGDLRKCNKDYVVEVTTLYKMLNSKTGVKYDMLQDVILEQLLTAISASKEE 315 (1074)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~l~~ai~~l~~s~~l~~~e~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~e~~~~s~~~ 315 (1074)
+-++..--.|+-.++-+-+|-..+..=-+|++.+--| .|.+-...+=+...+ ....|- +++ -+++.--.+..+.
T Consensus 100 ~~dviAeia~~~l~e~WPell~~L~q~~~S~~~~~rE-~al~il~s~~~~~~~-~~~~~~---~~l-~~lf~q~~~d~s~ 173 (1075)
T KOG2171|consen 100 LADVIAEIARNDLPEKWPELLQFLFQSTKSPNPSLRE-SALLILSSLPETFGN-TLQPHL---DDL-LRLFSQTMTDPSS 173 (1075)
T ss_pred HHHHHHHHHHhccccchHHHHHHHHHHhcCCCcchhH-HHHHHHHhhhhhhcc-ccchhH---HHH-HHHHHHhccCCcc
Confidence 4445444455555555666666666666777777777 555444444322221 111110 122 2333333444444
Q ss_pred hhhhhhHHhhHhhhhcchhhhhhhhhcCCCchHHHHHHhhcchhhHHHHHhcCCChhhhhhccchhHHHHHHhccccccC
Q 001455 316 TVIRASVSILTTIILANESVIEDIKKKGLRLSDLATALKRNVPEAAILIYLIKPSPTEIKTLELLPTLVEVICTSKLYKG 395 (1074)
Q Consensus 316 ~v~~~~v~il~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~a~vl~~l~~~~~~~~~~~~~~~~l~~v~~~~~~~~~ 395 (1074)
.|--+||.-+..++-..+ .++.--.... ++||+++.|+..--..++
T Consensus 174 ~vr~~a~rA~~a~~~~~~---------------------------------~~~~~~~~~~-~llP~~l~vl~~~i~~~d 219 (1075)
T KOG2171|consen 174 PVRVAAVRALGAFAEYLE---------------------------------NNKSEVDKFR-DLLPSLLNVLQEVIQDGD 219 (1075)
T ss_pred hHHHHHHHHHHHHHHHhc---------------------------------cchHHHHHHH-HHhHHHHHHhHhhhhccc
Confidence 465566665554444433 2222223333 899999999986554423
Q ss_pred cccccccCchhhHHH---HHHHHhhccccccchhhhhhhcchhhHhHHHHHHhcCChHH--HHHHHHHHHhhhhc-cCcc
Q 001455 396 KLESVRLTPPAASLM---IIEVLVTAFDYATNNMHLAAINSPRVLCGLLDVARHQNLEE--LISLATILVKCIQF-DGQC 469 (1074)
Q Consensus 396 ~~~~~~~~p~~aa~~---~l~~ll~~~d~~~~~~~~~~~~s~~~l~~l~~~~~~~~~~e--~~~~~~il~~C~~~-dg~c 469 (1074)
+ ++|-- .+..|+...-.-. -.++ ..+|.+-+..+++.++++ |..|.++|++|++. -+.|
T Consensus 220 ~---------~~a~~~l~~l~El~e~~pk~l----~~~l--~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~ 284 (1075)
T KOG2171|consen 220 D---------DAAKSALEALIELLESEPKLL----RPHL--SQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMC 284 (1075)
T ss_pred h---------HHHHHHHHHHHHHHhhchHHH----HHHH--HHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHh
Confidence 2 22222 3333333221000 1111 234677788888888887 78888889999885 4556
Q ss_pred hhHHHhhcCCcchhhhhhcC----------------Cc---hhHHH---HH-----------------HHHHHHhccC--
Q 001455 470 RKYLSEFTAVAPLACLLQSG----------------EK---RAIMI---AL-----------------EFFHEILRIP-- 508 (1074)
Q Consensus 470 r~~ia~~~~~~~~~~ll~~~----------------~~---~~~~~---a~-----------------~~l~ell~l~-- 508 (1074)
|.+=- .-..-|..+|+-- ++ ..... |+ ..+..++.-.
T Consensus 285 k~~~~--~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w 362 (1075)
T KOG2171|consen 285 KKLAL--LGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEW 362 (1075)
T ss_pred hhchh--hhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCH
Confidence 65422 2222222222210 00 01111 22 2222333322
Q ss_pred --chhhHHHHHHhhccCchh--------HHHHHHHHhhcccchhhHHHHHHHhhhccccCCCCCCcchHHHHHHHHHHHh
Q 001455 509 --RSSAIDLLQRIHKEGNIN--------ILHILKLSLQQLQSDYQLLAANLLLQLDTLENTTGKSVFTEEAMQVILKAVA 578 (1074)
Q Consensus 509 --r~~~~~~l~~~~~~~~~~--------~mh~ll~~lq~~~~~~~~~~a~lllqldll~~p~~~s~yreea~~~~~~~l~ 578 (1074)
|..+.--|..|-+ ||-. +|.+.+-+|+-.-|.=|--+-+.+=|+..==-|.=-+-|+|-=..+|+..|+
T Consensus 363 ~~R~AaL~Als~i~E-Gc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld 441 (1075)
T KOG2171|consen 363 KERHAALLALSVIAE-GCSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLD 441 (1075)
T ss_pred HHHHHHHHHHHHHHc-ccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhc
Confidence 2223334444443 3332 3778889999998888888888888886433344444555555569999999
Q ss_pred ccCChhhHHHHHHHHHhc
Q 001455 579 SEESSTMQLLSSFILSNI 596 (1074)
Q Consensus 579 ~~~~~~~q~~~~~~l~~l 596 (1074)
..+++++|.-||-||+++
T Consensus 442 ~~~~~rV~ahAa~al~nf 459 (1075)
T KOG2171|consen 442 STQNVRVQAHAAAALVNF 459 (1075)
T ss_pred ccCchHHHHHHHHHHHHH
Confidence 999999999999999975
No 428
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=76.61 E-value=23 Score=38.67 Aligned_cols=74 Identities=22% Similarity=0.192 Sum_probs=54.4
Q ss_pred CcEEEEEEeCCEEEEEECCCcEEEEECCCCCeeEEE----E-ec-------cCCCCEEEEEEcCCCCEEEEEeCCCeEEE
Q 001455 795 GAVTALIYYKGLLCSGFSDGSIKMWDIKKQSAMLVW----D-VK-------EHRKAVTSFSLFEPGESLLSGSADKTIGV 862 (1074)
Q Consensus 795 ~~VtsLafS~~~LaSGs~DGtVrIWDl~t~~~~~i~----t-l~-------gH~~~VtsLafSpdg~~LaSGS~DGtIrI 862 (1074)
.+|..+...++++++-+.+|.+++||+.+++..... . +. .....|..+.++.+|.-+++-+ +|....
T Consensus 13 s~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~ 91 (219)
T PF07569_consen 13 SPVSFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYS 91 (219)
T ss_pred CceEEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEE
Confidence 356667767889999999999999999987642111 0 11 3557788999998888887766 577899
Q ss_pred EEccCCc
Q 001455 863 WQMVQRK 869 (1074)
Q Consensus 863 WDl~tg~ 869 (1074)
|+..-+.
T Consensus 92 y~~~L~~ 98 (219)
T PF07569_consen 92 YSPDLGC 98 (219)
T ss_pred eccccce
Confidence 9876553
No 429
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=75.86 E-value=1.6e+02 Score=34.24 Aligned_cols=144 Identities=17% Similarity=0.196 Sum_probs=76.4
Q ss_pred eCCEEEEEECCCcEEEEECCCCCeeEEEEeccC--CCCEEEEEEcCCCCEEEEEeCCCeEEEEEccCCceEEEEEeccCC
Q 001455 803 YKGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEH--RKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATKE 880 (1074)
Q Consensus 803 S~~~LaSGs~DGtVrIWDl~t~~~~~i~tl~gH--~~~VtsLafSpdg~~LaSGS~DGtIrIWDl~tg~~~~~~~~~h~~ 880 (1074)
.++.++.+..||.|.-.|..++.. +.....- ...+.+-.+..+|+ ++.++.+|.+...|..+|+......... .
T Consensus 67 ~dg~v~~~~~~G~i~A~d~~~g~~--~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~-~ 142 (370)
T COG1520 67 GDGTVYVGTRDGNIFALNPDTGLV--KWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGG-S 142 (370)
T ss_pred eCCeEEEecCCCcEEEEeCCCCcE--EecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCC-C
Confidence 378888889999888888888753 2221111 12222222333565 7778889989999998888766544433 1
Q ss_pred CeE--EEccCCCeEEEEecCCeEEEEeCC-Cceeeee------cCCCeEEEEEeCCEEEEEEC--CCcEEEEEccCCcee
Q 001455 881 PIR--KLDTYGKTIFASTQGHRMKVIDSS-RTLKDIY------RSKGIKSMSVVQGKIYIGCM--DSSIQELAVSNNVER 949 (1074)
Q Consensus 881 ~V~--s~s~dg~~L~sgS~DgtI~VWDl~-~~l~~l~------~~~~V~sLa~sdgkLlaGs~--DgsI~IwDl~tg~~~ 949 (1074)
... ........++.++.++.+...|.. +...-.. ...........++.++.+.. ++.+.-+|..+|...
T Consensus 143 ~~~~~~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~vy~~~~~~~~~~~a~~~~~G~~~ 222 (370)
T COG1520 143 PYYASPPVVGDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGTVYVGSDGYDGILYALNAEDGTLK 222 (370)
T ss_pred eEEecCcEEcCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecceEEEecCCCcceEEEEEccCCcEe
Confidence 111 011122233333344544444443 1111100 00000011134777777776 677888888777654
Q ss_pred e
Q 001455 950 E 950 (1074)
Q Consensus 950 ~ 950 (1074)
-
T Consensus 223 w 223 (370)
T COG1520 223 W 223 (370)
T ss_pred e
Confidence 3
No 430
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.44 E-value=39 Score=44.95 Aligned_cols=214 Identities=19% Similarity=0.114 Sum_probs=101.6
Q ss_pred EEEEEe--CCEEEEEECCCcEEEEECCCCCeeEEEEeccCCC----CEEEEEEcCCCCEEEEEeCCCeEEEEEccCCceE
Q 001455 798 TALIYY--KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRK----AVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLE 871 (1074)
Q Consensus 798 tsLafS--~~~LaSGs~DGtVrIWDl~t~~~~~i~tl~gH~~----~VtsLafSpdg~~LaSGS~DGtIrIWDl~tg~~~ 871 (1074)
..++|+ -+.+|.|..+|.|+++-...-+.. ..|.. .+..+.|-...........+..+.+|.......
T Consensus 39 ~~~afD~~q~llai~t~tg~i~~yg~~~ve~~-----~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~- 112 (993)
T KOG1983|consen 39 SALAFDPTQGLLAIGTRTGAIKIYGQPGVEFV-----GLHPKQNQINVTRIELLVGISRNLVLSDDDSLHLWSIKIKTG- 112 (993)
T ss_pred cceeeccccceEEEEEecccEEEecccceEEE-----eccccccchhhhheeeeecccccceeecccceeeecccccce-
Confidence 344444 678999999999999987643221 12221 222223322223344445555666665543211
Q ss_pred EEEEeccCCCeEEEccCCCeE-EEEecCCeEEEEeCCCc-eeeee---c--CCCeEEEEEeCCEEEEEECCCcEEEEEcc
Q 001455 872 LIEVIATKEPIRKLDTYGKTI-FASTQGHRMKVIDSSRT-LKDIY---R--SKGIKSMSVVQGKIYIGCMDSSIQELAVS 944 (1074)
Q Consensus 872 ~~~~~~h~~~V~s~s~dg~~L-~sgS~DgtI~VWDl~~~-l~~l~---~--~~~V~sLa~sdgkLlaGs~DgsI~IwDl~ 944 (1074)
......+.++..++... +.+ ..+.+++||.... ...+. . ...+.-...+... -..|.+.
T Consensus 113 ----~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~---------~~~~~~~ 178 (993)
T KOG1983|consen 113 ----VFLKQEITSFVTDPPPDWLIG-ENGLVKVSDVLRHQLSDLKYAGTESSNFVPYESLSPTL---------SIEGLVI 178 (993)
T ss_pred ----eecCCcceeccCCCCcchhcc-cCceeeEeeechhhhccceeccccccccceeeeeccce---------eeecccc
Confidence 11233344444333311 445 8888899987621 11110 0 0000000000000 0001000
Q ss_pred C-Cce--eeeccccccccCCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEccCCCCCeEEEEEecCCCEEE
Q 001455 945 N-NVE--REIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLN 1021 (1074)
Q Consensus 945 t-g~~--~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S~dDgtI~IWDl~t~~~i~~l~gH~~~VtsLafSPDG~~La 1021 (1074)
. +.. .....+ ..+..+..++.+..+.........+. .+.+.+|+.........+...+. .+++++..++
T Consensus 179 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~v 250 (993)
T KOG1983|consen 179 DLDTVLISLPDAY-LGLSLIEYESLQVLYYSPTKILIGFN--RGLVVIKDRASKYVQSAYLPNGQ-----LESRDGSHFV 250 (993)
T ss_pred ccccceeeccccc-ccccccccccceeeeecCCCcceeee--eeeeeehhcccccchhhcccccc-----cCccCCceEE
Confidence 0 000 000000 12223344555555554444444443 45677777554433332222211 1288999999
Q ss_pred EEECCCcEEEEECCCCcE
Q 001455 1022 YNSSASSLQIWLRGTQQK 1039 (1074)
Q Consensus 1022 SGS~DGtIrIWDl~tg~~ 1039 (1074)
++..||.+..||...++.
T Consensus 251 ~~h~Dgs~~fWd~s~g~~ 268 (993)
T KOG1983|consen 251 SYHTDGSYAFWDVSSGKL 268 (993)
T ss_pred EEEecCCEEeeecCCCce
Confidence 999999999999988755
No 431
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=75.16 E-value=16 Score=48.39 Aligned_cols=169 Identities=15% Similarity=0.207 Sum_probs=88.6
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEEccCCceEEEEEeccCCCeEE----------EccCCCeEEEEecCCeEEEEeCC--
Q 001455 840 TSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATKEPIRK----------LDTYGKTIFASTQGHRMKVIDSS-- 907 (1074)
Q Consensus 840 tsLafSpdg~~LaSGS~DGtIrIWDl~tg~~~~~~~~~h~~~V~s----------~s~dg~~L~sgS~DgtI~VWDl~-- 907 (1074)
+.+-+.|.=.+.. .+.|+.+.+|+.+++. ......+....|.. |.++=+++++.+.--.|.++-+.
T Consensus 82 ~~mGiFpeI~RaW-iTiDn~L~lWny~~~~-e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~ 159 (1311)
T KOG1900|consen 82 TDMGIFPEIGRAW-ITIDNNLFLWNYESDN-ELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFD 159 (1311)
T ss_pred eeeccchhhcceE-EEeCCeEEEEEcCCCC-ccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEec
Confidence 3344444433332 2347889999999854 22233344444433 22333455555555566666443
Q ss_pred ---Ccee------eee-cCCCeEEEEEe-CCEEEEEECCCcEEEEEccCCceeeeccccccccCCCCCeEEEEEcCCceE
Q 001455 908 ---RTLK------DIY-RSKGIKSMSVV-QGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLY 976 (1074)
Q Consensus 908 ---~~l~------~l~-~~~~V~sLa~s-dgkLlaGs~DgsI~IwDl~tg~~~~i~~~~r~~~~h~~~I~sL~~spd~i~ 976 (1074)
.... .+. .+-.|.|+... +|+++.||.||.|+-+-.... ..|.+... ..+..+....
T Consensus 160 ~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~---------~gWf~~rc--~Kiclt~s~l- 227 (1311)
T KOG1900|consen 160 EFTGELSIFNTSFKISVDGVSVNCITYTENGRIFFAGRDGNLYELVYQAE---------DGWFGSRC--RKICLTKSVL- 227 (1311)
T ss_pred cccCcccccccceeeecCCceEEEEEeccCCcEEEeecCCCEEEEEEecc---------Cchhhccc--ccccCchhHH-
Confidence 1111 111 14458888865 999999999996554433331 11211110 0011100000
Q ss_pred EEEEecCCCeEEEEECCCCCeEEEccCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCC
Q 001455 977 SASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGT 1036 (1074)
Q Consensus 977 las~S~dDgtI~IWDl~t~~~i~~l~gH~~~VtsLafSPDG~~LaSGS~DGtIrIWDl~t 1036 (1074)
. .+.=| ..+....+..+|..+........+.+-++.|+|++|++..
T Consensus 228 -s-------~lvPs------~~~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 228 -S-------SLVPS------LLSVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred -H-------Hhhhh------hhcCCCCCCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence 0 00000 1111135667888898888888888888899999999765
No 432
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=75.01 E-value=29 Score=41.64 Aligned_cols=244 Identities=16% Similarity=0.192 Sum_probs=141.0
Q ss_pred chHHHHHHHHHHHhcCcchhhhhhhHHhhHhhhhcchhhhhhhhhcCCCchHHHHHHhh---cc--h-hhHHHHHhcC--
Q 001455 297 LQDVILEQLLTAISASKEETVIRASVSILTTIILANESVIEDIKKKGLRLSDLATALKR---NV--P-EAAILIYLIK-- 368 (1074)
Q Consensus 297 ~~~~~i~~~~e~~~~s~~~~v~~~~v~il~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~---~~--~-~a~vl~~l~~-- 368 (1074)
..+.+.+-|.+.|.++.+...+..+|..|.++...++ .|+.+.+.+ .+.++..+|+. ++ . ++...+.||.
T Consensus 140 ~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~-~R~~f~~~~-~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~ 217 (429)
T cd00256 140 DLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDE-YRFAFVLAD-GVPTLVKLLSNATLGFQLQYQSIFCIWLLTFN 217 (429)
T ss_pred HHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCch-HHHHHHHcc-CHHHHHHHHhhccccHHHHHHHHHHHHHHhcc
Confidence 3444556677777776677888888888888866555 455555555 68999999977 22 2 7777777773
Q ss_pred -CChhhhhhccchhHHHHHHhccccccCcccccccCchhhHHHHHHHHhhcc-ccccchhhhhhhcchhhHhHHHHHHhc
Q 001455 369 -PSPTEIKTLELLPTLVEVICTSKLYKGKLESVRLTPPAASLMIIEVLVTAF-DYATNNMHLAAINSPRVLCGLLDVARH 446 (1074)
Q Consensus 369 -~~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~~p~~aa~~~l~~ll~~~-d~~~~~~~~~~~~s~~~l~~l~~~~~~ 446 (1074)
+....+...+++|.+++|++.+... +- ---+++++-.|++.. +...+
T Consensus 218 ~~~~~~~~~~~~i~~l~~i~k~s~KE--Kv-------vRv~l~~l~Nll~~~~~~~~~---------------------- 266 (429)
T cd00256 218 PHAAEVLKRLSLIQDLSDILKESTKE--KV-------IRIVLAIFRNLISKRVDREVK---------------------- 266 (429)
T ss_pred HHHHHhhccccHHHHHHHHHHhhhhH--HH-------HHHHHHHHHHHhhcccccchh----------------------
Confidence 2334556678999999999875533 21 134566666666632 21111
Q ss_pred CChHHHHHHHHHHHhhhhccCcchhHHHhhcCCcchhhhhhcC--CchhHHHHHHHHHHHhccCc---hhhHHHHHHhhc
Q 001455 447 QNLEELISLATILVKCIQFDGQCRKYLSEFTAVAPLACLLQSG--EKRAIMIALEFFHEILRIPR---SSAIDLLQRIHK 521 (1074)
Q Consensus 447 ~~~~e~~~~~~il~~C~~~dg~cr~~ia~~~~~~~~~~ll~~~--~~~~~~~a~~~l~ell~l~r---~~~~~~l~~~~~ 521 (1074)
...+..|+-| ++-++++.|... .|..-...+.+|+|.|.-+- ++..+-..+++.
T Consensus 267 ------~~~~~~mv~~---------------~l~~~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~s 325 (429)
T cd00256 267 ------KTAALQMVQC---------------KVLKTLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRS 325 (429)
T ss_pred ------hhHHHHHHHc---------------ChHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhc
Confidence 1111222221 333444444433 45555566666666665543 223333333333
Q ss_pred c-----------------------CchhHHHHHHHHhhcccchhhHHHHHHHhhhccccC--CCCCCcchHHHHHHHHHH
Q 001455 522 E-----------------------GNINILHILKLSLQQLQSDYQLLAANLLLQLDTLEN--TTGKSVFTEEAMQVILKA 576 (1074)
Q Consensus 522 ~-----------------------~~~~~mh~ll~~lq~~~~~~~~~~a~lllqldll~~--p~~~s~yreea~~~~~~~ 576 (1074)
| ..+...-.|.-.|..+.-.. ..|+-.-=+=-++. |.+..+-..--.+..+..
T Consensus 326 g~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~--~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~ 403 (429)
T cd00256 326 GRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSVDPI--ILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMR 403 (429)
T ss_pred CCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCcc--eeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHH
Confidence 2 22555667777775543222 22333322222222 667767666667888888
Q ss_pred HhccCChhhHHHHHHHHHhc
Q 001455 577 VASEESSTMQLLSSFILSNI 596 (1074)
Q Consensus 577 l~~~~~~~~q~~~~~~l~~l 596 (1074)
|-.++++.++-+|-.|+--|
T Consensus 404 Lm~h~d~~Vr~eAL~avQkl 423 (429)
T cd00256 404 LLNHEDPNVRYEALLAVQKL 423 (429)
T ss_pred HhcCCCHHHHHHHHHHHHHH
Confidence 88888999999766665433
No 433
>PRK13684 Ycf48-like protein; Provisional
Probab=74.44 E-value=1.7e+02 Score=33.84 Aligned_cols=147 Identities=10% Similarity=-0.014 Sum_probs=82.8
Q ss_pred CCeEEEEEe-CCEEEEEECCCcEEEEEccCCc-eeeeccccccccCCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCC
Q 001455 917 KGIKSMSVV-QGKIYIGCMDSSIQELAVSNNV-EREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHR 994 (1074)
Q Consensus 917 ~~V~sLa~s-dgkLlaGs~DgsI~IwDl~tg~-~~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S~dDgtI~IWDl~t 994 (1074)
..+..+.+. ++.+++.+..|.+..-.-..++ ..... ......++.+.+.+++...+.+. +|.+.+=..+.
T Consensus 173 g~~~~i~~~~~g~~v~~g~~G~i~~s~~~gg~tW~~~~------~~~~~~l~~i~~~~~g~~~~vg~--~G~~~~~s~d~ 244 (334)
T PRK13684 173 GVVRNLRRSPDGKYVAVSSRGNFYSTWEPGQTAWTPHQ------RNSSRRLQSMGFQPDGNLWMLAR--GGQIRFNDPDD 244 (334)
T ss_pred ceEEEEEECCCCeEEEEeCCceEEEEcCCCCCeEEEee------CCCcccceeeeEcCCCCEEEEec--CCEEEEccCCC
Confidence 346777775 7777777777766532111111 11111 12356788888888876655543 56554323444
Q ss_pred CCeEEEccC----CCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCcEEEEEeC--C--CCeEEEEE-cCCEEEEEECC
Q 001455 995 KPQISIAPE----KGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISA--G--SKITSLLT-ANDIVLCGTET 1065 (1074)
Q Consensus 995 ~~~i~~l~g----H~~~VtsLafSPDG~~LaSGS~DGtIrIWDl~tg~~l~tL~~--h--s~VtsLa~-dg~~LaSGs~D 1065 (1074)
+........ ....+.++.+.|++..+++| .+|.|. .....|+.-..... . ...+.+.+ +++..+..+..
T Consensus 245 G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ 322 (334)
T PRK13684 245 LESWSKPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLGQR 322 (334)
T ss_pred CCccccccCCccccccceeeEEEcCCCCEEEEc-CCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEECCC
Confidence 443222111 12357889999988866655 467554 44455554444332 1 23555554 46667778888
Q ss_pred CcEEEEec
Q 001455 1066 GLIKGWIP 1073 (1074)
Q Consensus 1066 G~IrIWdi 1073 (1074)
|.|--|+.
T Consensus 323 G~il~~~~ 330 (334)
T PRK13684 323 GVLLRYVG 330 (334)
T ss_pred ceEEEecC
Confidence 98887763
No 434
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=74.02 E-value=2e+02 Score=34.38 Aligned_cols=139 Identities=7% Similarity=0.044 Sum_probs=75.4
Q ss_pred cCCCeEEEEecCCeEEEEeCCCce-e--eeecCCCeEEEEEe-CCEEEEEECCCcEEEEEccCCcee---eecccccccc
Q 001455 887 TYGKTIFASTQGHRMKVIDSSRTL-K--DIYRSKGIKSMSVV-QGKIYIGCMDSSIQELAVSNNVER---EIKAPFKSWR 959 (1074)
Q Consensus 887 ~dg~~L~sgS~DgtI~VWDl~~~l-~--~l~~~~~V~sLa~s-dgkLlaGs~DgsI~IwDl~tg~~~---~i~~~~r~~~ 959 (1074)
+++..++.+.....++-||-.... . .......+..+.+. ++.++..+.+|.+..- ...+..- .... ....
T Consensus 248 ~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g~~G~l~~S-~d~G~~~~~~~f~~--~~~~ 324 (398)
T PLN00033 248 PDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLTRGGGLYVS-KGTGLTEEDFDFEE--ADIK 324 (398)
T ss_pred CCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEeCCceEEEe-cCCCCcccccceee--cccC
Confidence 455555555544444445544321 2 22234557788886 7787777777776443 3332210 0000 0001
Q ss_pred CCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEcc---CCCCCeEEEEEecCCCEEEEEECCCcEEEE
Q 001455 960 LQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAP---EKGTTIQAMAVVEDFIYLNYNSSASSLQIW 1032 (1074)
Q Consensus 960 ~h~~~I~sL~~spd~i~las~S~dDgtI~IWDl~t~~~i~~l~---gH~~~VtsLafSPDG~~LaSGS~DGtIrIW 1032 (1074)
.....+..+.+.+++...+++. +|.+... ...++...... .-....+.+.|.++++.+++|. +|.|--|
T Consensus 325 ~~~~~l~~v~~~~d~~~~a~G~--~G~v~~s-~D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G~-~G~il~~ 396 (398)
T PLN00033 325 SRGFGILDVGYRSKKEAWAAGG--SGILLRS-TDGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLGN-DGVLLRY 396 (398)
T ss_pred CCCcceEEEEEcCCCcEEEEEC--CCcEEEe-CCCCcceeEccccCCCCcceeEEEEcCCCceEEEeC-CcEEEEe
Confidence 1234588888888877766653 5655444 34444333322 2245688999988877777764 7776544
No 435
>PLN02153 epithiospecifier protein
Probab=73.07 E-value=1.8e+02 Score=33.45 Aligned_cols=146 Identities=12% Similarity=0.153 Sum_probs=69.0
Q ss_pred CCEEEEEECC-------CcEEEEECCCCCeeEEEEecc-CCC---CEEEEEEcCCCCEEEEEeCC-----CeEEEEEccC
Q 001455 804 KGLLCSGFSD-------GSIKMWDIKKQSAMLVWDVKE-HRK---AVTSFSLFEPGESLLSGSAD-----KTIGVWQMVQ 867 (1074)
Q Consensus 804 ~~~LaSGs~D-------GtVrIWDl~t~~~~~i~tl~g-H~~---~VtsLafSpdg~~LaSGS~D-----GtIrIWDl~t 867 (1074)
+..++.|+.+ ..+.+||..+.+......... ... ....+.+ ++..++.||.+ ..+.+||+.+
T Consensus 33 ~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~t 110 (341)
T PLN02153 33 DKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAV--GTKLYIFGGRDEKREFSDFYSYDTVK 110 (341)
T ss_pred CEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEE--CCEEEEECCCCCCCccCcEEEEECCC
Confidence 4455556543 357888988765432221111 010 1222333 45556666653 3577889887
Q ss_pred CceEEEEEecc---CCCe--EE-EccCCCeEEEEecC-----------CeEEEEeCCCce-eeeec------CCCeEEEE
Q 001455 868 RKLELIEVIAT---KEPI--RK-LDTYGKTIFASTQG-----------HRMKVIDSSRTL-KDIYR------SKGIKSMS 923 (1074)
Q Consensus 868 g~~~~~~~~~h---~~~V--~s-~s~dg~~L~sgS~D-----------gtI~VWDl~~~l-~~l~~------~~~V~sLa 923 (1074)
.+......... ..+. .+ ...++...+.|+.+ ..+.+||..... ..+.. ...-.+++
T Consensus 111 ~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~ 190 (341)
T PLN02153 111 NEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFA 190 (341)
T ss_pred CEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCcceEE
Confidence 65533211100 1111 11 22345555566543 246778876321 11111 11112333
Q ss_pred EeCCEEEE-EEC-------------CCcEEEEEccCCceeee
Q 001455 924 VVQGKIYI-GCM-------------DSSIQELAVSNNVEREI 951 (1074)
Q Consensus 924 ~sdgkLla-Gs~-------------DgsI~IwDl~tg~~~~i 951 (1074)
.-+++++. |+. ...+.+||..+.+...+
T Consensus 191 ~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~ 232 (341)
T PLN02153 191 VVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEV 232 (341)
T ss_pred EECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEec
Confidence 44677544 432 14588899888665443
No 436
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=72.82 E-value=2.1e+02 Score=34.03 Aligned_cols=255 Identities=8% Similarity=0.032 Sum_probs=109.8
Q ss_pred EEEEEECCCc--EEEEECCCCCeeEEEEeccCC-CCEEEEEEcCCCCEEEEEeCCCeEEEEEccCCceEEEEEeccCCCe
Q 001455 806 LLCSGFSDGS--IKMWDIKKQSAMLVWDVKEHR-KAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATKEPI 882 (1074)
Q Consensus 806 ~LaSGs~DGt--VrIWDl~t~~~~~i~tl~gH~-~~VtsLafSpdg~~LaSGS~DGtIrIWDl~tg~~~~~~~~~h~~~V 882 (1074)
+|+++..||. +.+-|+.+++. ..+..+. .......++|+++.++-......++--|+.+.+....... ....+
T Consensus 50 llF~s~~dg~~nly~lDL~t~~i---~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~-p~~~~ 125 (386)
T PF14583_consen 50 LLFASDFDGNRNLYLLDLATGEI---TQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEV-PDDWK 125 (386)
T ss_dssp EEEEE-TTSS-EEEEEETTT-EE---EE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE---TTEE
T ss_pred EEEEeccCCCcceEEEEcccCEE---EECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEEC-Ccccc
Confidence 5667776775 55557777754 3343332 2222466678888877666667888889998765332222 22222
Q ss_pred --EEE--ccCCCeEEEEec----------------------CCeEEEEeCC-Cceeeee-cCCCeEEEEEe--CCEEEE-
Q 001455 883 --RKL--DTYGKTIFASTQ----------------------GHRMKVIDSS-RTLKDIY-RSKGIKSMSVV--QGKIYI- 931 (1074)
Q Consensus 883 --~s~--s~dg~~L~sgS~----------------------DgtI~VWDl~-~~l~~l~-~~~~V~sLa~s--dgkLla- 931 (1074)
-.+ ..++..++..-. ...|...|+. +....+. ....+..+.++ +..++.
T Consensus 126 g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~dp~li~f 205 (386)
T PF14583_consen 126 GYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPTDPTLIMF 205 (386)
T ss_dssp EEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEEEETTEEEEEEE
T ss_pred cccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccCcccCCCCCCEEEE
Confidence 122 334444332211 0112222333 2222222 23445666675 444444
Q ss_pred ---EECCCc-EEEEEccC--CceeeeccccccccCCCCCeEEEEEcCCceEEEEEe--c--CCCeEEEEECCCCCeEEEc
Q 001455 932 ---GCMDSS-IQELAVSN--NVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSS--V--EGSNIKEWRRHRKPQISIA 1001 (1074)
Q Consensus 932 ---Gs~Dgs-I~IwDl~t--g~~~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S--~--dDgtI~IWDl~t~~~i~~l 1001 (1074)
|-.+.. -++|-+.+ +....+... .....+..=-|.++|..+.--+ + .+..|.-+|..++......
T Consensus 206 CHEGpw~~Vd~RiW~i~~dg~~~~~v~~~-----~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~ 280 (386)
T PF14583_consen 206 CHEGPWDLVDQRIWTINTDGSNVKKVHRR-----MEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLM 280 (386)
T ss_dssp EE-S-TTTSS-SEEEEETTS---EESS--------TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEE
T ss_pred eccCCcceeceEEEEEEcCCCcceeeecC-----CCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEE
Confidence 334443 36666554 222222110 1122333334556665443211 1 1225566677776543322
Q ss_pred cCCCCCeEEEEEecCCCEEEEEECCC----------------cEEEEECCCCcEE--EE-------EeCCC----CeEEE
Q 001455 1002 PEKGTTIQAMAVVEDFIYLNYNSSAS----------------SLQIWLRGTQQKV--GR-------ISAGS----KITSL 1052 (1074)
Q Consensus 1002 ~gH~~~VtsLafSPDG~~LaSGS~DG----------------tIrIWDl~tg~~l--~t-------L~~hs----~VtsL 1052 (1074)
...+...+-.++||++++-=+.|. -|++++.+.+... .. +.++. +=-++
T Consensus 281 --~~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~F 358 (386)
T PF14583_consen 281 --EMPWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSF 358 (386)
T ss_dssp --EE-SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE-------BTTBSSTT----EE
T ss_pred --eCCceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcceeecCCCccCCCCCcc
Confidence 222344556678999887644442 4667888776653 11 11111 12347
Q ss_pred EEcCC-EEEEEECCCcEEEE
Q 001455 1053 LTAND-IVLCGTETGLIKGW 1071 (1074)
Q Consensus 1053 a~dg~-~LaSGs~DG~IrIW 1071 (1074)
+|||+ +|+++...|...||
T Consensus 359 SPDgk~VlF~Sd~~G~~~vY 378 (386)
T PF14583_consen 359 SPDGKWVLFRSDMEGPPAVY 378 (386)
T ss_dssp -TTSSEEEEEE-TTSS-EEE
T ss_pred CCCCCEEEEECCCCCCccEE
Confidence 77777 66677788887776
No 437
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.57 E-value=73 Score=41.56 Aligned_cols=70 Identities=20% Similarity=0.228 Sum_probs=44.8
Q ss_pred EEEEeCCEEEEEECCCcEEEEECCCCCeeEEE-E------e--ccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEccCCc
Q 001455 799 ALIYYKGLLCSGFSDGSIKMWDIKKQSAMLVW-D------V--KEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRK 869 (1074)
Q Consensus 799 sLafS~~~LaSGs~DGtVrIWDl~t~~~~~i~-t------l--~gH~~~VtsLafSpdg~~LaSGS~DGtIrIWDl~tg~ 869 (1074)
|++-.++.+..|+.||.+.+|.+.......-. . + .-++.+|+-+...+.-..++.-+ |+.|.++++.+-+
T Consensus 21 ~va~~~~~l~vGt~~G~L~lY~i~~~~~~~~~~~~~~~~~~~~~~~kk~i~~l~~~~~~~~ll~l~-dsqi~~~~l~~~~ 99 (877)
T KOG2063|consen 21 CVAAYGNHLYVGTRDGDLYLYSIYERGNPESVELVTETVKFEKEFSKKPINKLLVCASLELLLILS-DSQIAVHKLPELE 99 (877)
T ss_pred HHHHhCCEEEEEcCCCcEEEEeccccccccchhhhcchhHHhhhhccchhHHHhhcchhcchheec-CCcceeeecCccc
Confidence 55555999999999999999998754221000 0 1 12356777776666555555443 6778888776543
No 438
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.56 E-value=21 Score=41.40 Aligned_cols=243 Identities=16% Similarity=0.191 Sum_probs=149.3
Q ss_pred CCceeccc-hHHHHHHHHHHHhcCcchhhhhhhHHhhHhhhhcchhhhhhhhhcCCCchHHHHHHhhcchhhHHHHHhcC
Q 001455 290 TGVKYDML-QDVILEQLLTAISASKEETVIRASVSILTTIILANESVIEDIKKKGLRLSDLATALKRNVPEAAILIYLIK 368 (1074)
Q Consensus 290 ~~~~~~~~-~~~~i~~~~e~~~~s~~~~v~~~~v~il~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~a~vl~~l~~ 368 (1074)
-++..+|. -...|.|+|. ..-+|..-+|--+..++|| .++...|-+.| -++|++++=|.
T Consensus 119 k~liv~l~Gl~~Li~qmmt-----d~vevqcnaVgCitnLaT~-d~nk~kiA~sG-aL~pltrLaks------------- 178 (550)
T KOG4224|consen 119 KGLIVSLLGLDLLILQMMT-----DGVEVQCNAVGCITNLATF-DSNKVKIARSG-ALEPLTRLAKS------------- 178 (550)
T ss_pred ceEEEeccChHHHHHHhcC-----CCcEEEeeehhhhhhhhcc-ccchhhhhhcc-chhhhHhhccc-------------
Confidence 45555533 3555666653 3667778888777888888 45555555554 34555543222
Q ss_pred CChhhhhhccchhHHHHHHhccccccCcccccccCchhhHHHHHHHHhhccccccchhhhhhhcchhhHhHHHHHHhcCC
Q 001455 369 PSPTEIKTLELLPTLVEVICTSKLYKGKLESVRLTPPAASLMIIEVLVTAFDYATNNMHLAAINSPRVLCGLLDVARHQN 448 (1074)
Q Consensus 369 ~~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~~p~~aa~~~l~~ll~~~d~~~~~~~~~~~~s~~~l~~l~~~~~~~~ 448 (1074)
+.... + -+..+.|+. .-+.-++.+.|+.-|+|++|+.-+..||
T Consensus 179 ----kdirv-----------------q-------------rnatgaLln---mThs~EnRr~LV~aG~lpvLVsll~s~d 221 (550)
T KOG4224|consen 179 ----KDIRV-----------------Q-------------RNATGALLN---MTHSRENRRVLVHAGGLPVLVSLLKSGD 221 (550)
T ss_pred ----chhhH-----------------H-------------HHHHHHHHH---hhhhhhhhhhhhccCCchhhhhhhccCC
Confidence 11110 1 112333322 1122267788888999999999999999
Q ss_pred hHHHHHHHHHHHhhhhccCcchhHHHhhcC--CcchhhhhhcCCchhHHHHHHHHHHHhccCchhhHHHHHHhhccCchh
Q 001455 449 LEELISLATILVKCIQFDGQCRKYLSEFTA--VAPLACLLQSGEKRAIMIALEFFHEILRIPRSSAIDLLQRIHKEGNIN 526 (1074)
Q Consensus 449 ~~e~~~~~~il~~C~~~dg~cr~~ia~~~~--~~~~~~ll~~~~~~~~~~a~~~l~ell~l~r~~~~~~l~~~~~~~~~~ 526 (1074)
..-+-.+..-+ .=|..|..-|+-+||.-+ ...+++|...+.+++++-|-.-|--| .+-++..+.|-+.|++-
T Consensus 222 ~dvqyycttai-snIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnl-----asdt~Yq~eiv~ag~lP 295 (550)
T KOG4224|consen 222 LDVQYYCTTAI-SNIAVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNL-----ASDTEYQREIVEAGSLP 295 (550)
T ss_pred hhHHHHHHHHh-hhhhhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhh-----cccchhhhHHHhcCCch
Confidence 98876654433 347889999999999885 57899999999999999875544322 22345666777778765
Q ss_pred HHHHHHHHhhcccchhhHHHHH-HHhhhccccCCCCCCcchHHH--HHHHHHHHhccCChhhHHHHHHHHHhcCccccc
Q 001455 527 ILHILKLSLQQLQSDYQLLAAN-LLLQLDTLENTTGKSVFTEEA--MQVILKAVASEESSTMQLLSSFILSNIGGTFSW 602 (1074)
Q Consensus 527 ~mh~ll~~lq~~~~~~~~~~a~-lllqldll~~p~~~s~yreea--~~~~~~~l~~~~~~~~q~~~~~~l~~l~g~fs~ 602 (1074)
..--|| ++|+- |+++. ..--=.+=.-|-.-+.- -|| .+-|+.-|++.+|...|.-|-.+|-+|.|.+--
T Consensus 296 ~lv~Ll----qs~~~--plilasVaCIrnisihplNe~lI-~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~ 367 (550)
T KOG4224|consen 296 LLVELL----QSPMG--PLILASVACIRNISIHPLNEVLI-ADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEH 367 (550)
T ss_pred HHHHHH----hCcch--hHHHHHHHHHhhcccccCcccce-ecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhh
Confidence 433333 34432 33222 11111111223222221 122 344889999999999999999999999995543
No 439
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=72.13 E-value=1.6e+02 Score=36.70 Aligned_cols=142 Identities=18% Similarity=0.186 Sum_probs=80.8
Q ss_pred CcEEEEEEeCC-E-EEEEE--CCCcEEEEECCCCCeeEEEEeccCCCCEEEEEEcCCC----CEEEEEeCCCeEEEEEcc
Q 001455 795 GAVTALIYYKG-L-LCSGF--SDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPG----ESLLSGSADKTIGVWQMV 866 (1074)
Q Consensus 795 ~~VtsLafS~~-~-LaSGs--~DGtVrIWDl~t~~~~~i~tl~gH~~~VtsLafSpdg----~~LaSGS~DGtIrIWDl~ 866 (1074)
.+|..++|.|| . +.|.- .+|.+++=|. ..+.. -.-|..++|.|-+ ..|+.....+.|.||.+.
T Consensus 20 HPvhGlaWTDGkqVvLT~L~l~~gE~kfGds-----~viGq----FEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~ 90 (671)
T PF15390_consen 20 HPVHGLAWTDGKQVVLTDLQLHNGEPKFGDS-----KVIGQ----FEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLC 90 (671)
T ss_pred ccccceEecCCCEEEEEeeeeeCCccccCCc-----cEeec----cceeeeeeecCcccCCCCceEEEeccceEEEEEec
Confidence 36788999844 3 44432 2333332221 12333 3458999999853 357778888999999875
Q ss_pred C-----CceEEEEEeccCCC--eE----EEccCCCeEEEEecCCeEEEEeCC----CceeeeecCCCeEEEEEe-CCE-E
Q 001455 867 Q-----RKLELIEVIATKEP--IR----KLDTYGKTIFASTQGHRMKVIDSS----RTLKDIYRSKGIKSMSVV-QGK-I 929 (1074)
Q Consensus 867 t-----g~~~~~~~~~h~~~--V~----s~s~dg~~L~sgS~DgtI~VWDl~----~~l~~l~~~~~V~sLa~s-dgk-L 929 (1074)
. ++...........+ |. -|.|....+++.+....-.++++. +....+...+.|.|.+|. ||+ +
T Consensus 91 ~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RL 170 (671)
T PF15390_consen 91 PSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRL 170 (671)
T ss_pred cCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEE
Confidence 2 33333333233222 21 145666666666655544455554 222334556779999997 665 3
Q ss_pred -EEEECCCcEEEEEccC
Q 001455 930 -YIGCMDSSIQELAVSN 945 (1074)
Q Consensus 930 -laGs~DgsI~IwDl~t 945 (1074)
++.+..=.-++||-..
T Consensus 171 VVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 171 VVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred EEEeCCeEEEEEecCch
Confidence 4445555667888654
No 440
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=72.06 E-value=8.4 Score=42.42 Aligned_cols=137 Identities=17% Similarity=0.311 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHhcCcchhhhhhhHHhhHhhhhcchhhhhhhhhcCCCchHHHHHHhhcchhhHHHHHhcCCChhhhhhcc
Q 001455 299 DVILEQLLTAISASKEETVIRASVSILTTIILANESVIEDIKKKGLRLSDLATALKRNVPEAAILIYLIKPSPTEIKTLE 378 (1074)
Q Consensus 299 ~~~i~~~~e~~~~s~~~~v~~~~v~il~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~a~vl~~l~~~~~~~~~~~~ 378 (1074)
|-++=-||...+.|+..|-+|.+- +..+.+++|.+=.+ |..||+ +.|
T Consensus 122 PlylYpfL~Tt~~~r~fEyLRLts-----------------------LGVIgaLvk~dd~e--Vi~fLl--------~Te 168 (293)
T KOG3036|consen 122 PLYLYPFLNTTSKSRPFEYLRLTS-----------------------LGVIGALVKNDDQE--VIRFLL--------TTE 168 (293)
T ss_pred hhhhHHhhhccccCCchHHHhHHH-----------------------HHHHHHHHhcCcHH--HHHHHH--------Hhh
Confidence 334455666666666666666431 23455566766555 555554 569
Q ss_pred chhHHHHHHhccccccCcccccccCchhhHHHHHHHHhh---ccccccch---------------hhhhhhcchhhHhHH
Q 001455 379 LLPTLVEVICTSKLYKGKLESVRLTPPAASLMIIEVLVT---AFDYATNN---------------MHLAAINSPRVLCGL 440 (1074)
Q Consensus 379 ~~~~l~~v~~~~~~~~~~~~~~~~~p~~aa~~~l~~ll~---~~d~~~~~---------------~~~~~~~s~~~l~~l 440 (1074)
.||..++++++|.|. . |..|.+|+|.++. |..|.=.+ .++...-++++|.-.
T Consensus 169 IVPlCLrime~GSel-S---------KtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhv 238 (293)
T KOG3036|consen 169 IVPLCLRIMESGSEL-S---------KTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHV 238 (293)
T ss_pred hHHHHHHHHhcccHH-H---------HHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 999999999999977 2 5778888887764 32221111 122222356666655
Q ss_pred HHHHh--cCChHHHHHHHHH---------HHhhhhccCcchhHHHhhcC
Q 001455 441 LDVAR--HQNLEELISLATI---------LVKCIQFDGQCRKYLSEFTA 478 (1074)
Q Consensus 441 ~~~~~--~~~~~e~~~~~~i---------l~~C~~~dg~cr~~ia~~~~ 478 (1074)
+++.- .+|.+-|.++..- -..|++.|+.|+..+++-++
T Consensus 239 iRcYlrLsdnprar~aL~~clPd~Lrd~tfs~~l~~D~~~k~~l~~ll~ 287 (293)
T KOG3036|consen 239 IRCYLRLSDNPRARAALRSCLPDQLRDGTFSLLLKDDPETKQWLQQLLK 287 (293)
T ss_pred HHHHHHhcCCHHHHHHHHhhCcchhccchHHHHHhcChhHHHHHHHHHH
Confidence 55442 2355444443322 24578889999888877543
No 441
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=71.99 E-value=1.9e+02 Score=33.28 Aligned_cols=70 Identities=9% Similarity=0.065 Sum_probs=49.6
Q ss_pred CeEEEEECCCCCeEEEcc--CCCCCeEEEEEec------CCCEEEEEECCCcEEEEECCCCcEEEEEeCCC-------Ce
Q 001455 985 SNIKEWRRHRKPQISIAP--EKGTTIQAMAVVE------DFIYLNYNSSASSLQIWLRGTQQKVGRISAGS-------KI 1049 (1074)
Q Consensus 985 gtI~IWDl~t~~~i~~l~--gH~~~VtsLafSP------DG~~LaSGS~DGtIrIWDl~tg~~l~tL~~hs-------~V 1049 (1074)
|.|-+||.... .++.+. +.-...+.|+..| .|.+|+---.||+|..||..+|+.+..+.... .+
T Consensus 222 G~VdvFd~~G~-l~~r~as~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GL 300 (336)
T TIGR03118 222 GYVNVFTLNGQ-LLRRVASSGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGL 300 (336)
T ss_pred ceEEEEcCCCc-EEEEeccCCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCe
Confidence 67888887644 344342 2333556677654 56777777789999999999999999888652 26
Q ss_pred EEEEEc
Q 001455 1050 TSLLTA 1055 (1074)
Q Consensus 1050 tsLa~d 1055 (1074)
+.++|.
T Consensus 301 WgL~fG 306 (336)
T TIGR03118 301 WSLTFG 306 (336)
T ss_pred EEeeeC
Confidence 778875
No 442
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=71.83 E-value=1e+02 Score=37.99 Aligned_cols=133 Identities=12% Similarity=0.057 Sum_probs=84.9
Q ss_pred HHHHHhcCCChhhhhhccchhHHHHHHhccccccCcccccccCchhhHHHHHHHHhhccccccchhhhhhhcchhhHhHH
Q 001455 361 AILIYLIKPSPTEIKTLELLPTLVEVICTSKLYKGKLESVRLTPPAASLMIIEVLVTAFDYATNNMHLAAINSPRVLCGL 440 (1074)
Q Consensus 361 ~vl~~l~~~~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~~p~~aa~~~l~~ll~~~d~~~~~~~~~~~~s~~~l~~l 440 (1074)
.+|-++++.....-..-+..|.|.+-|...+.. + +..++.-|..++... ..-+..+...+++..+
T Consensus 60 ~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~~~~----V------r~l~l~~l~~~~~~~-----~~~~~~~~~~~l~~~i 124 (503)
T PF10508_consen 60 DILKRLLSALSPDSLLPQYQPFLQRGLTHPSPK----V------RRLALKQLGRIARHS-----EGAAQLLVDNELLPLI 124 (503)
T ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHhcCCCHH----H------HHHHHHHHHHHhcCC-----HHHHHHhcCccHHHHH
Confidence 345555555555444446666666666653322 1 244444455554322 1234445578899999
Q ss_pred HHHHhcCChHHHHHHHHHHHhhhhccCcchhHHHhhcCCcchhhhhhcCCchhHHHHHHHHHHHhccCc
Q 001455 441 LDVARHQNLEELISLATILVKCIQFDGQCRKYLSEFTAVAPLACLLQSGEKRAIMIALEFFHEILRIPR 509 (1074)
Q Consensus 441 ~~~~~~~~~~e~~~~~~il~~C~~~dg~cr~~ia~~~~~~~~~~ll~~~~~~~~~~a~~~l~ell~l~r 509 (1074)
+..+..++.+-...|+.+|.+...-...+...+.... ..-+..++...++..|..+++++.++.+.+.
T Consensus 125 ~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~-~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~ 192 (503)
T PF10508_consen 125 IQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDSNL-LSKLKSLMSQSSDIVRCRVYELLVEIASHSP 192 (503)
T ss_pred HHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcch-HHHHHHHHhccCHHHHHHHHHHHHHHHhcCH
Confidence 9999988999888888888877766555543333232 4555556666577889999999999987775
No 443
>PRK13684 Ycf48-like protein; Provisional
Probab=71.35 E-value=2e+02 Score=33.28 Aligned_cols=105 Identities=12% Similarity=0.016 Sum_probs=58.5
Q ss_pred CCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCC-eEEEccCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCcEE
Q 001455 962 SKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKP-QISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKV 1040 (1074)
Q Consensus 962 ~~~I~sL~~spd~i~las~S~dDgtI~IWDl~t~~-~i~~l~gH~~~VtsLafSPDG~~LaSGS~DGtIrIWDl~tg~~l 1040 (1074)
...+..+.+.+++.+++.+. .|.+..-....+. -.....+....++++.+.|+++.++.|. .|.+++=..+.|..-
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~--~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~-~G~~~~~s~d~G~sW 248 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSS--RGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLAR-GGQIRFNDPDDLESW 248 (334)
T ss_pred cceEEEEEECCCCeEEEEeC--CceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEec-CCEEEEccCCCCCcc
Confidence 45678889999988776654 4544321112222 2222233455789999999999877764 676643234444432
Q ss_pred EEEeCC-----CCeEEEEEc-CCEEEEEECCCcEE
Q 001455 1041 GRISAG-----SKITSLLTA-NDIVLCGTETGLIK 1069 (1074)
Q Consensus 1041 ~tL~~h-----s~VtsLa~d-g~~LaSGs~DG~Ir 1069 (1074)
.....+ ..+.++.+. ...++.++.+|.|.
T Consensus 249 ~~~~~~~~~~~~~l~~v~~~~~~~~~~~G~~G~v~ 283 (334)
T PRK13684 249 SKPIIPEITNGYGYLDLAYRTPGEIWAGGGNGTLL 283 (334)
T ss_pred ccccCCccccccceeeEEEcCCCCEEEEcCCCeEE
Confidence 222222 236666665 22455555667554
No 444
>PRK13616 lipoprotein LpqB; Provisional
Probab=71.33 E-value=2.8e+02 Score=34.93 Aligned_cols=57 Identities=16% Similarity=0.102 Sum_probs=32.6
Q ss_pred CcEEEEEEe--CCEEEEEE------CCC--cEEEEECCCCCeeEEEEeccCCCCEEEEEEcCCCCEEEEEeC
Q 001455 795 GAVTALIYY--KGLLCSGF------SDG--SIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSA 856 (1074)
Q Consensus 795 ~~VtsLafS--~~~LaSGs------~DG--tVrIWDl~t~~~~~i~tl~gH~~~VtsLafSpdg~~LaSGS~ 856 (1074)
..+.+.+++ ++.++..- .|+ .+.+++.... ...+ ..+. ..+.-.|+|+|..|++.+.
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~-~~~l--t~g~--~~t~PsWspDG~~lw~v~d 416 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGV-AVQV--LEGH--SLTRPSWSLDADAVWVVVD 416 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCc-ceee--ecCC--CCCCceECCCCCceEEEec
Confidence 467778888 44444333 244 4444454322 2111 2232 3788899999998887753
No 445
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=70.93 E-value=68 Score=32.46 Aligned_cols=104 Identities=12% Similarity=0.108 Sum_probs=63.6
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEEccCCce------EEEEEeccCCCeEEEc-----c--CCCeEEEEecCCeEEEEeCC
Q 001455 841 SFSLFEPGESLLSGSADKTIGVWQMVQRKL------ELIEVIATKEPIRKLD-----T--YGKTIFASTQGHRMKVIDSS 907 (1074)
Q Consensus 841 sLafSpdg~~LaSGS~DGtIrIWDl~tg~~------~~~~~~~h~~~V~s~s-----~--dg~~L~sgS~DgtI~VWDl~ 907 (1074)
.-.|....+.|+.++.-|.|.|++...... ...........|+++. + ..+.|+.| ....+..||+.
T Consensus 3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliG-t~t~llaYDV~ 81 (136)
T PF14781_consen 3 IGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIG-TQTSLLAYDVE 81 (136)
T ss_pred EEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEe-ccceEEEEEcc
Confidence 345666666788888888899988654321 1112333444555542 1 23345544 45678999998
Q ss_pred Cceeeeec--CCCeEEEEEe-----CCEEEEEECCCcEEEEEccC
Q 001455 908 RTLKDIYR--SKGIKSMSVV-----QGKIYIGCMDSSIQELAVSN 945 (1074)
Q Consensus 908 ~~l~~l~~--~~~V~sLa~s-----dgkLlaGs~DgsI~IwDl~t 945 (1074)
.....++. ..+|.++.+- +..++..+.+..|+-||...
T Consensus 82 ~N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G 126 (136)
T PF14781_consen 82 NNSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEG 126 (136)
T ss_pred cCchhhhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCC
Confidence 66665554 5678888872 34466666667777777655
No 446
>PRK09687 putative lyase; Provisional
Probab=70.79 E-value=1.2e+02 Score=34.42 Aligned_cols=29 Identities=14% Similarity=0.332 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHhccCChhhHHHHHHHHHhc
Q 001455 567 EEAMQVILKAVASEESSTMQLLSSFILSNI 596 (1074)
Q Consensus 567 eea~~~~~~~l~~~~~~~~q~~~~~~l~~l 596 (1074)
++|+++|+.+|+.. ++.+...|+.+|-.+
T Consensus 158 ~~ai~~L~~~L~d~-~~~VR~~A~~aLg~~ 186 (280)
T PRK09687 158 EAAIPLLINLLKDP-NGDVRNWAAFALNSN 186 (280)
T ss_pred HHHHHHHHHHhcCC-CHHHHHHHHHHHhcC
Confidence 67777777777654 445666666666554
No 447
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=70.46 E-value=26 Score=31.41 Aligned_cols=85 Identities=18% Similarity=0.191 Sum_probs=56.4
Q ss_pred cchhhhh-hcCCchhHHHHHHHHHHHhccCchhhHHHHHHhhccCchhHHHHHHHHhhcccchhhHHHHHHHhhhccccC
Q 001455 480 APLACLL-QSGEKRAIMIALEFFHEILRIPRSSAIDLLQRIHKEGNINILHILKLSLQQLQSDYQLLAANLLLQLDTLEN 558 (1074)
Q Consensus 480 ~~~~~ll-~~~~~~~~~~a~~~l~ell~l~r~~~~~~l~~~~~~~~~~~mh~ll~~lq~~~~~~~~~~a~lllqldll~~ 558 (1074)
+++++.| ...+...|..|+..|.++ |.-.....|+..|+..-+.-|--++.-|=++.
T Consensus 2 ~~L~~~l~~~~~~~vr~~a~~~L~~~------------------~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~---- 59 (88)
T PF13646_consen 2 PALLQLLQNDPDPQVRAEAARALGEL------------------GDPEAIPALIELLKDEDPMVRRAAARALGRIG---- 59 (88)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHCC------------------THHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH----
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHc------------------CCHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC----
Confidence 3566766 566777777777666622 12233455555556655666666666565441
Q ss_pred CCCCCcchHHHHHHHHHHHhccCChhhHHHHHHHH
Q 001455 559 TTGKSVFTEEAMQVILKAVASEESSTMQLLSSFIL 593 (1074)
Q Consensus 559 p~~~s~yreea~~~~~~~l~~~~~~~~q~~~~~~l 593 (1074)
.+++++.|.+.|...++..++..|+.||
T Consensus 60 -------~~~~~~~L~~~l~~~~~~~vr~~a~~aL 87 (88)
T PF13646_consen 60 -------DPEAIPALIKLLQDDDDEVVREAAAEAL 87 (88)
T ss_dssp -------HHHTHHHHHHHHTC-SSHHHHHHHHHHH
T ss_pred -------CHHHHHHHHHHHcCCCcHHHHHHHHhhc
Confidence 5889999999999988888899888887
No 448
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=70.40 E-value=2.5e+02 Score=36.51 Aligned_cols=70 Identities=13% Similarity=0.035 Sum_probs=44.1
Q ss_pred CCEEEEEECCCcEEEEECCCCCeeEEEEeccCCCCEE-------------EEEEcC--CCCEEEEEeC----------CC
Q 001455 804 KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVT-------------SFSLFE--PGESLLSGSA----------DK 858 (1074)
Q Consensus 804 ~~~LaSGs~DGtVrIWDl~t~~~~~i~tl~gH~~~Vt-------------sLafSp--dg~~LaSGS~----------DG 858 (1074)
++.++.++.|+.+.-.|.++++. +..+ +..+.|. .+.-.| .+..++.|+. +|
T Consensus 260 ~~rV~~~T~Dg~LiALDA~TGk~--~W~f-g~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G 336 (764)
T TIGR03074 260 ARRIILPTSDARLIALDADTGKL--CEDF-GNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSG 336 (764)
T ss_pred CCEEEEecCCCeEEEEECCCCCE--EEEe-cCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCc
Confidence 56888899999999999998864 4444 2222221 011111 1334555542 68
Q ss_pred eEEEEEccCCceEEEEEe
Q 001455 859 TIGVWQMVQRKLELIEVI 876 (1074)
Q Consensus 859 tIrIWDl~tg~~~~~~~~ 876 (1074)
.|+-+|..+|+.......
T Consensus 337 ~I~A~Da~TGkl~W~~~~ 354 (764)
T TIGR03074 337 VIRAFDVNTGALVWAWDP 354 (764)
T ss_pred EEEEEECCCCcEeeEEec
Confidence 899999999998765543
No 449
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=69.94 E-value=2e+02 Score=32.73 Aligned_cols=104 Identities=8% Similarity=0.046 Sum_probs=49.4
Q ss_pred CCCEEEEEeCC-----CeEEEEEccCCceE--EEEEeccCCCe---EEEccCCCeEEEEec-----CCeEEEEeCCCc-e
Q 001455 847 PGESLLSGSAD-----KTIGVWQMVQRKLE--LIEVIATKEPI---RKLDTYGKTIFASTQ-----GHRMKVIDSSRT-L 910 (1074)
Q Consensus 847 dg~~LaSGS~D-----GtIrIWDl~tg~~~--~~~~~~h~~~V---~s~s~dg~~L~sgS~-----DgtI~VWDl~~~-l 910 (1074)
++..++.|+.+ ..+..+|+.+.+.. .........+. .....++...+.|+. ...+..||+... -
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W 151 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEW 151 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCCCccCceEEEEcCCCCCe
Confidence 45556667654 34666777665531 11111111111 112234555555553 236778887632 2
Q ss_pred eeee---cCCCeE-EEEEeCCEEEE-EECCC----cEEEEEccCCceee
Q 001455 911 KDIY---RSKGIK-SMSVVQGKIYI-GCMDS----SIQELAVSNNVERE 950 (1074)
Q Consensus 911 ~~l~---~~~~V~-sLa~sdgkLla-Gs~Dg----sI~IwDl~tg~~~~ 950 (1074)
..+. ...... .++..++++++ |+.++ .+..||..+++...
T Consensus 152 ~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~ 200 (323)
T TIGR03548 152 FELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQK 200 (323)
T ss_pred eECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCeeEE
Confidence 2221 111112 22234777655 66543 35678888766543
No 450
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=69.82 E-value=1.4e+02 Score=33.41 Aligned_cols=185 Identities=17% Similarity=0.221 Sum_probs=109.7
Q ss_pred hHHHHHHHHHHHhcCcchhhhhhhHHhhHhhhhcchhhhhhhhhcCCCchHHHHHHhhc---ch-hhHHHHHhcCCCh-h
Q 001455 298 QDVILEQLLTAISASKEETVIRASVSILTTIILANESVIEDIKKKGLRLSDLATALKRN---VP-EAAILIYLIKPSP-T 372 (1074)
Q Consensus 298 ~~~~i~~~~e~~~~s~~~~v~~~~v~il~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~---~~-~a~vl~~l~~~~~-~ 372 (1074)
-|.-++-|+-.|-.+.++-+.+.+...|.....+. .+...|-+.| .+..+..+|... +. +|.--+.=+.+.. .
T Consensus 10 ~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~-~nq~~Ir~~G-gi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en 87 (254)
T PF04826_consen 10 EAQELQKLLCLLESTEDPFIQEKALIALGNSAAFP-FNQDIIRDLG-GISLIGSLLNDPNPSVREKALNALNNLSVNDEN 87 (254)
T ss_pred CHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCh-hHHHHHHHcC-CHHHHHHHcCCCChHHHHHHHHHHHhcCCChhh
Confidence 34556899999999999999999999988865443 4555554433 456666677774 33 3433333222222 2
Q ss_pred hhhhccchhHHHHHHhccccccCcccccccCchhhHHHHHHHHhhccccccchhhhhhhcchhhHhHHHHHHhcCChHHH
Q 001455 373 EIKTLELLPTLVEVICTSKLYKGKLESVRLTPPAASLMIIEVLVTAFDYATNNMHLAAINSPRVLCGLLDVARHQNLEEL 452 (1074)
Q Consensus 373 ~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~~p~~aa~~~l~~ll~~~d~~~~~~~~~~~~s~~~l~~l~~~~~~~~~~e~ 452 (1074)
+..--..++.+++-+.+.. . .... +-|++-+|-.|-.-.|+ .+++ ...++.+++.+..|+.+-|
T Consensus 88 ~~~Ik~~i~~Vc~~~~s~~-l-ns~~------Q~agLrlL~nLtv~~~~-------~~~l-~~~i~~ll~LL~~G~~~~k 151 (254)
T PF04826_consen 88 QEQIKMYIPQVCEETVSSP-L-NSEV------QLAGLRLLTNLTVTNDY-------HHML-ANYIPDLLSLLSSGSEKTK 151 (254)
T ss_pred HHHHHHHHHHHHHHHhcCC-C-CCHH------HHHHHHHHHccCCCcch-------hhhH-HhhHHHHHHHHHcCChHHH
Confidence 1111124555554443321 1 1111 25677777776221221 1122 2346777888889999999
Q ss_pred HHHHHHHHhhhhccCcc-hhHHHhhcCCcchhhhhhcCCchh-HHHHHHHHH
Q 001455 453 ISLATILVKCIQFDGQC-RKYLSEFTAVAPLACLLQSGEKRA-IMIALEFFH 502 (1074)
Q Consensus 453 ~~~~~il~~C~~~dg~c-r~~ia~~~~~~~~~~ll~~~~~~~-~~~a~~~l~ 502 (1074)
..+..+|+ ++-.+... |..|+.. -+++|+.||++...++ -..++.||.
T Consensus 152 ~~vLk~L~-nLS~np~~~~~Ll~~q-~~~~~~~Lf~~~~~~~~l~~~l~~~~ 201 (254)
T PF04826_consen 152 VQVLKVLV-NLSENPDMTRELLSAQ-VLSSFLSLFNSSESKENLLRVLTFFE 201 (254)
T ss_pred HHHHHHHH-HhccCHHHHHHHHhcc-chhHHHHHHccCCccHHHHHHHHHHH
Confidence 99988554 55555554 5566555 5889999999986554 555665553
No 451
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=69.56 E-value=36 Score=37.13 Aligned_cols=37 Identities=14% Similarity=-0.004 Sum_probs=26.5
Q ss_pred CCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEE
Q 001455 961 QSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQIS 999 (1074)
Q Consensus 961 h~~~I~sL~~spd~i~las~S~dDgtI~IWDl~t~~~i~ 999 (1074)
....|..+.++.+|.-+++.+ +|....|+.+-+.-+.
T Consensus 65 ~~~~i~~~~lt~~G~PiV~ls--ng~~y~y~~~L~~W~~ 101 (219)
T PF07569_consen 65 SSPNITSCSLTSNGVPIVTLS--NGDSYSYSPDLGCWIR 101 (219)
T ss_pred CCCcEEEEEEcCCCCEEEEEe--CCCEEEeccccceeEE
Confidence 356778888888888888776 4667888876655444
No 452
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=69.24 E-value=2.2e+02 Score=32.79 Aligned_cols=223 Identities=13% Similarity=0.113 Sum_probs=96.5
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCeEEEEEccCCceEEEEE-eccCC----CeEEEccCCCeEEEEecCCeEEEEeCC-C
Q 001455 835 HRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEV-IATKE----PIRKLDTYGKTIFASTQGHRMKVIDSS-R 908 (1074)
Q Consensus 835 H~~~VtsLafSpdg~~LaSGS~DGtIrIWDl~tg~~~~~~~-~~h~~----~V~s~s~dg~~L~sgS~DgtI~VWDl~-~ 908 (1074)
-..++..|.|.....-++.|. .++| +....|-...... ..... ...++...+...+.++..+.|..-.-. .
T Consensus 15 t~~~l~dV~F~d~~~G~~VG~-~g~i--l~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~~g~ivG~~g~ll~T~DgG~ 91 (302)
T PF14870_consen 15 TDKPLLDVAFVDPNHGWAVGA-YGTI--LKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGNEGWIVGEPGLLLHTTDGGK 91 (302)
T ss_dssp -SS-EEEEEESSSS-EEEEET-TTEE--EEESSTTSS-EE-----S-----EEEEEEEETTEEEEEEETTEEEEESSTTS
T ss_pred CCCceEEEEEecCCEEEEEec-CCEE--EEECCCCccccccccCCCccceeeEEEEEecCCceEEEcCCceEEEecCCCC
Confidence 345899999985555466554 5643 3333322111111 11111 233444444444455555543222211 2
Q ss_pred ceeeeec----CCCeEEEE-EeCCEEEEEECCCcEEEEEccC-Cce-eeeccccccccCCCCCeEEEEEcCCceEEEEEe
Q 001455 909 TLKDIYR----SKGIKSMS-VVQGKIYIGCMDSSIQELAVSN-NVE-REIKAPFKSWRLQSKPINSLVVYKDWLYSASSS 981 (1074)
Q Consensus 909 ~l~~l~~----~~~V~sLa-~sdgkLlaGs~DgsI~IwDl~t-g~~-~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S 981 (1074)
.-..+.. ......+. ..++.....+..|.|+. ... |+. ..+. ......+..+...+++.+++.++
T Consensus 92 tW~~v~l~~~lpgs~~~i~~l~~~~~~l~~~~G~iy~--T~DgG~tW~~~~------~~~~gs~~~~~r~~dG~~vavs~ 163 (302)
T PF14870_consen 92 TWERVPLSSKLPGSPFGITALGDGSAELAGDRGAIYR--TTDGGKTWQAVV------SETSGSINDITRSSDGRYVAVSS 163 (302)
T ss_dssp S-EE----TT-SS-EEEEEEEETTEEEEEETT--EEE--ESSTTSSEEEEE-------S----EEEEEE-TTS-EEEEET
T ss_pred CcEEeecCCCCCCCeeEEEEcCCCcEEEEcCCCcEEE--eCCCCCCeeEcc------cCCcceeEeEEECCCCcEEEEEC
Confidence 1122111 11222232 24556555555555432 222 211 1111 12246678888889999888765
Q ss_pred cCCCeEEEEECCCCCeEEEccCCCCCeEEEEEecCCCEEEEEECCCcEEEEE-CCCCcEEEE--Ee--CC-CCeEEEEEc
Q 001455 982 VEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWL-RGTQQKVGR--IS--AG-SKITSLLTA 1055 (1074)
Q Consensus 982 ~dDgtI~IWDl~t~~~i~~l~gH~~~VtsLafSPDG~~LaSGS~DGtIrIWD-l~tg~~l~t--L~--~h-s~VtsLa~d 1055 (1074)
.+....-||.....-..........|.+|.|+|++...+.+ ..|.|+.=+ ....+.... .. .. ..+..++|.
T Consensus 164 -~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~ 241 (302)
T PF14870_consen 164 -RGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYR 241 (302)
T ss_dssp -TSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEES
T ss_pred -cccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCccccccccCCcccCceeeEEEEec
Confidence 55556678865433333333456789999999998876655 778887766 222222211 11 11 227788886
Q ss_pred -CCEEEEEECCCcEEE
Q 001455 1056 -NDIVLCGTETGLIKG 1070 (1074)
Q Consensus 1056 -g~~LaSGs~DG~IrI 1070 (1074)
++.+.+++..|.+.+
T Consensus 242 ~~~~~wa~gg~G~l~~ 257 (302)
T PF14870_consen 242 PPNEIWAVGGSGTLLV 257 (302)
T ss_dssp SSS-EEEEESTT-EEE
T ss_pred CCCCEEEEeCCccEEE
Confidence 345555555665543
No 453
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=69.17 E-value=1.9e+02 Score=32.09 Aligned_cols=156 Identities=12% Similarity=0.047 Sum_probs=84.5
Q ss_pred CEEEEEEcCCCCEEEEEe---CCCeEEEEEccCCceEEEEEeccCCCeEEEccCCCeEEEEecCCeEEEEe--CCCc--e
Q 001455 838 AVTSFSLFEPGESLLSGS---ADKTIGVWQMVQRKLELIEVIATKEPIRKLDTYGKTIFASTQGHRMKVID--SSRT--L 910 (1074)
Q Consensus 838 ~VtsLafSpdg~~LaSGS---~DGtIrIWDl~tg~~~~~~~~~h~~~V~s~s~dg~~L~sgS~DgtI~VWD--l~~~--l 910 (1074)
.+.+.++++++..++... ....+.++..... ......+..-.--+|++++....+...+....++. .... .
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~--~~~~~~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~ 102 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGP--VRPVLTGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEP 102 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCc--ceeeccCCccccccccCCCCEEEEEcCCCceEEEEecCCCccee
Confidence 688999999999876555 3334555544322 22121222111125777755555555555556663 2211 1
Q ss_pred eeeec--CC-CeEEEEEe-CCE-EEE---EECCCcEEEEEccCCcee---eeccccccccCCCCCeEEEEEcCCceEEEE
Q 001455 911 KDIYR--SK-GIKSMSVV-QGK-IYI---GCMDSSIQELAVSNNVER---EIKAPFKSWRLQSKPINSLVVYKDWLYSAS 979 (1074)
Q Consensus 911 ~~l~~--~~-~V~sLa~s-dgk-Lla---Gs~DgsI~IwDl~tg~~~---~i~~~~r~~~~h~~~I~sL~~spd~i~las 979 (1074)
..... .. .|..+.++ ||. ++. ...++.|.+--+..+... ....+..........+..+.|.++..+++.
T Consensus 103 ~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~ 182 (253)
T PF10647_consen 103 VEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVL 182 (253)
T ss_pred EEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEEE
Confidence 11111 12 79999997 776 322 344677887766532222 222222222233568889999998887776
Q ss_pred EecCCCeEEE-EECCCC
Q 001455 980 SSVEGSNIKE-WRRHRK 995 (1074)
Q Consensus 980 ~S~dDgtI~I-WDl~t~ 995 (1074)
....++.+.. .....+
T Consensus 183 ~~~~~~~~~~~v~~dG~ 199 (253)
T PF10647_consen 183 GRSAGGPVVRLVSVDGG 199 (253)
T ss_pred eCCCCCceeEEEEccCC
Confidence 6655554444 444433
No 454
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=68.20 E-value=2.2e+02 Score=32.49 Aligned_cols=230 Identities=14% Similarity=0.049 Sum_probs=111.8
Q ss_pred CEEEEEECCCcEEEEECCCCCeeEEEEeccCCCCEEEEEEcCCCCEEEEEe-CCCeEEEEEccCCce-------------
Q 001455 805 GLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGS-ADKTIGVWQMVQRKL------------- 870 (1074)
Q Consensus 805 ~~LaSGs~DGtVrIWDl~t~~~~~i~tl~gH~~~VtsLafSpdg~~LaSGS-~DGtIrIWDl~tg~~------------- 870 (1074)
.+++.|..+|...+. ........... .+...|+++...+..+.|++-+ ....++++++..-..
T Consensus 14 ~~lL~GTe~Gly~~~-~~~~~~~~~kl--~~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~~~ 90 (302)
T smart00036 14 KWLLVGTEEGLYVLN-ISDQPGTLEKL--IGRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLVIR 90 (302)
T ss_pred cEEEEEeCCceEEEE-cccCCCCeEEe--cCcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCcccccc
Confidence 379999999965554 54321122222 3567899999998888766554 333499999843211
Q ss_pred -EEEEEeccCCCeEE--EccCC-CeEEEEecCCeEEEEeCCCceeee-----------ecCCCeEEEEEe----CCEEEE
Q 001455 871 -ELIEVIATKEPIRK--LDTYG-KTIFASTQGHRMKVIDSSRTLKDI-----------YRSKGIKSMSVV----QGKIYI 931 (1074)
Q Consensus 871 -~~~~~~~h~~~V~s--~s~dg-~~L~sgS~DgtI~VWDl~~~l~~l-----------~~~~~V~sLa~s----dgkLla 931 (1074)
......++...... +.... ..++++....+|.++...+....+ .....+..+... ..++..
T Consensus 91 ~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~lcv 170 (302)
T smart00036 91 KNVLTKIPDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSFERPGICI 170 (302)
T ss_pred ccceEeCCcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEccChhhhhhhhcccccccCCCCccceEeeecccccceEEEE
Confidence 00011222222221 22111 233444455667666544221111 112223333222 234555
Q ss_pred EECCCcEEEEEccC--CceeeeccccccccCCC-CCeEEEEEcCCceEEEEEecCCCeEEEEECCC-CCeEEEccCCCCC
Q 001455 932 GCMDSSIQELAVSN--NVEREIKAPFKSWRLQS-KPINSLVVYKDWLYSASSSVEGSNIKEWRRHR-KPQISIAPEKGTT 1007 (1074)
Q Consensus 932 Gs~DgsI~IwDl~t--g~~~~i~~~~r~~~~h~-~~I~sL~~spd~i~las~S~dDgtI~IWDl~t-~~~i~~l~gH~~~ 1007 (1074)
|+..+...++++.. ........+... .... .++..... +++.++++.. ....+-|... .......-.-...
T Consensus 171 G~~~~~~~~~~~~~~~~~~~d~sl~~~~-~~~~~~p~~i~~l-~~~e~Llc~~---~~~v~Vn~~G~~~~r~~~l~w~~~ 245 (302)
T smart00036 171 GSDKGGGDVVQFHESLVSKEDLSLPFLS-EETSLKPISVVQV-PRDEFLLCYD---EFGVFVNLYGKRRSRNPILHWEFM 245 (302)
T ss_pred EEcCCCCeEEEEeecccccccccccccc-cccccCceEEEEE-CCCeEEEEEC---cEEEEEeCCCCccccceEEEcCCc
Confidence 66643344455533 111000000000 0111 34444444 4456676663 3455555543 1111111112334
Q ss_pred eEEEEEecCCCEEEEEECCCcEEEEECCCCcEEEEEeC
Q 001455 1008 IQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISA 1045 (1074)
Q Consensus 1008 VtsLafSPDG~~LaSGS~DGtIrIWDl~tg~~l~tL~~ 1045 (1074)
..++++. ..|++.-+ ++.|.||++.+++.++++..
T Consensus 246 p~~~~~~--~pyll~~~-~~~ievr~l~~~~l~q~i~~ 280 (302)
T smart00036 246 PESFAYH--SPYLLAFH-DNGIEIRSIKTGELLQELAD 280 (302)
T ss_pred ccEEEEE--CCEEEEEc-CCcEEEEECCCCceEEEEec
Confidence 5566766 35666665 45599999999999999875
No 455
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=68.04 E-value=1.6e+02 Score=36.61 Aligned_cols=142 Identities=11% Similarity=0.026 Sum_probs=80.6
Q ss_pred CCCCcEEEEEEeC----C--EEEEEECCCcEEEEECCCCC---eeEEEEecc-C--CCCE--EEEEEcCCCCEEEEEeCC
Q 001455 792 KCSGAVTALIYYK----G--LLCSGFSDGSIKMWDIKKQS---AMLVWDVKE-H--RKAV--TSFSLFEPGESLLSGSAD 857 (1074)
Q Consensus 792 gH~~~VtsLafS~----~--~LaSGs~DGtVrIWDl~t~~---~~~i~tl~g-H--~~~V--tsLafSpdg~~LaSGS~D 857 (1074)
|.-..|..+.|.+ + .+.+......|.||-+.-.. .+.+..-.. . .-+| ..+.|+|....|+.-...
T Consensus 54 GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~ 133 (671)
T PF15390_consen 54 GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTAR 133 (671)
T ss_pred eccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecC
Confidence 4456789999981 1 35566667889999875211 111111111 1 1122 357799999987665555
Q ss_pred CeEEEEEccCCceEEEEEeccCCCeE--EEccCCCeEEEEecC-CeEEEEeCCCc-------eeeeecCCCeEEEEEe-C
Q 001455 858 KTIGVWQMVQRKLELIEVIATKEPIR--KLDTYGKTIFASTQG-HRMKVIDSSRT-------LKDIYRSKGIKSMSVV-Q 926 (1074)
Q Consensus 858 GtIrIWDl~tg~~~~~~~~~h~~~V~--s~s~dg~~L~sgS~D-gtI~VWDl~~~-------l~~l~~~~~V~sLa~s-d 926 (1074)
..-.+.++.........-....+.|. ||..+|++++++-.. =.-++||-.+. ...+.-++.|.++.-. |
T Consensus 134 dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qKtL~~CsfcPVFdv~~~Icsi~AT~d 213 (671)
T PF15390_consen 134 DVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQKTLHRCSFCPVFDVGGYICSIEATVD 213 (671)
T ss_pred ceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCchhhhhhCCcceeecCCCceEEEEEecc
Confidence 44456666554433333345555565 488899977766443 36788986522 1223335567776665 5
Q ss_pred CEEEEEE
Q 001455 927 GKIYIGC 933 (1074)
Q Consensus 927 gkLlaGs 933 (1074)
.+++.+.
T Consensus 214 sqVAvaT 220 (671)
T PF15390_consen 214 SQVAVAT 220 (671)
T ss_pred ceEEEEe
Confidence 5554443
No 456
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=66.98 E-value=15 Score=29.72 Aligned_cols=32 Identities=9% Similarity=-0.022 Sum_probs=26.2
Q ss_pred CCEEEEEEcCCCC---EEEEEeCCCeEEEEEccCC
Q 001455 837 KAVTSFSLFEPGE---SLLSGSADKTIGVWQMVQR 868 (1074)
Q Consensus 837 ~~VtsLafSpdg~---~LaSGS~DGtIrIWDl~tg 868 (1074)
++|.++.|+|+.. .|+-+-.-|.|.|+|++++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 4789999997544 6887878899999999853
No 457
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.60 E-value=1.4e+02 Score=38.08 Aligned_cols=80 Identities=9% Similarity=0.103 Sum_probs=50.9
Q ss_pred CeEEEEeCCCcee-e-eecCCCeEEEEEe-CCEEEEEECCCcEEEEEccCCceeeeccccccccCCCCCeEEEEEcCCce
Q 001455 899 HRMKVIDSSRTLK-D-IYRSKGIKSMSVV-QGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWL 975 (1074)
Q Consensus 899 gtI~VWDl~~~l~-~-l~~~~~V~sLa~s-dgkLlaGs~DgsI~IwDl~tg~~~~i~~~~r~~~~h~~~I~sL~~spd~i 975 (1074)
..|+||+..+... . ...+..+-.+.|+ +..+++...+|.+++|++........- -........|....+..+|+
T Consensus 64 ~~I~If~~sG~lL~~~~w~~~~lI~mgWs~~eeLI~v~k~g~v~Vy~~~ge~ie~~s---vg~e~~~~~I~ec~~f~~GV 140 (829)
T KOG2280|consen 64 PYIRIFNISGQLLGRILWKHGELIGMGWSDDEELICVQKDGTVHVYGLLGEFIESNS---VGFESQMSDIVECRFFHNGV 140 (829)
T ss_pred eeEEEEeccccchHHHHhcCCCeeeecccCCceEEEEeccceEEEeecchhhhcccc---cccccccCceeEEEEecCce
Confidence 3577888774332 2 2335578889998 566999999999999999763322110 01122344566666666888
Q ss_pred EEEEEe
Q 001455 976 YSASSS 981 (1074)
Q Consensus 976 ~las~S 981 (1074)
.+.+.+
T Consensus 141 avlt~~ 146 (829)
T KOG2280|consen 141 AVLTVS 146 (829)
T ss_pred EEEecC
Confidence 888764
No 458
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=66.58 E-value=33 Score=42.36 Aligned_cols=71 Identities=14% Similarity=0.147 Sum_probs=42.6
Q ss_pred eCCEEEEEECCCcEEEEECCC----CCeeEEEEecc--------------------CCCCEEEEEEcC----CCCEEEEE
Q 001455 803 YKGLLCSGFSDGSIKMWDIKK----QSAMLVWDVKE--------------------HRKAVTSFSLFE----PGESLLSG 854 (1074)
Q Consensus 803 S~~~LaSGs~DGtVrIWDl~t----~~~~~i~tl~g--------------------H~~~VtsLafSp----dg~~LaSG 854 (1074)
++..++.+..||.+....... +.......+.. -.+.+..+++++ +..++++.
T Consensus 157 ~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl 236 (547)
T PF11715_consen 157 SEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTL 236 (547)
T ss_dssp SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEE
T ss_pred CCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEE
Confidence 356788888888887776654 11101111111 123456677766 77789999
Q ss_pred eCCCeEEEEEccCCceEEE
Q 001455 855 SADKTIGVWQMVQRKLELI 873 (1074)
Q Consensus 855 S~DGtIrIWDl~tg~~~~~ 873 (1074)
+.|+++|+||+.++++...
T Consensus 237 ~~D~~LRiW~l~t~~~~~~ 255 (547)
T PF11715_consen 237 SRDHTLRIWSLETGQCLAT 255 (547)
T ss_dssp ETTSEEEEEETTTTCEEEE
T ss_pred eCCCeEEEEECCCCeEEEE
Confidence 9999999999999987443
No 459
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=65.06 E-value=3e+02 Score=32.79 Aligned_cols=184 Identities=9% Similarity=0.100 Sum_probs=100.7
Q ss_pred cCCCeEEEEecCCeEEEEeCCCceeeeecCCCeEEEEE----e-CCE---EEEEE-CC---CcEEEEEccC--Cceeeec
Q 001455 887 TYGKTIFASTQGHRMKVIDSSRTLKDIYRSKGIKSMSV----V-QGK---IYIGC-MD---SSIQELAVSN--NVEREIK 952 (1074)
Q Consensus 887 ~dg~~L~sgS~DgtI~VWDl~~~l~~l~~~~~V~sLa~----s-dgk---LlaGs-~D---gsI~IwDl~t--g~~~~i~ 952 (1074)
|....++....++.+.+||+.+........+....+.+ . +|+ +++++ .+ ..|++|.+.. +....+.
T Consensus 66 p~kSlIigTdK~~GL~VYdL~Gk~lq~~~~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~v~ 145 (381)
T PF02333_consen 66 PAKSLIIGTDKKGGLYVYDLDGKELQSLPVGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTDVT 145 (381)
T ss_dssp GGG-EEEEEETTTEEEEEETTS-EEEEE-SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE-C
T ss_pred cccceEEEEeCCCCEEEEcCCCcEEEeecCCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcceEcC
Confidence 45567778888899999999976655555555554443 2 454 44443 22 4699997763 3332221
Q ss_pred cccccccCCCCCeEEEEEc--C-Cc-eEEEEEecCCCeEEEEECC---CC----CeEEEccCCCCCeEEEEEecCCCEEE
Q 001455 953 APFKSWRLQSKPINSLVVY--K-DW-LYSASSSVEGSNIKEWRRH---RK----PQISIAPEKGTTIQAMAVVEDFIYLN 1021 (1074)
Q Consensus 953 ~~~r~~~~h~~~I~sL~~s--p-d~-i~las~S~dDgtI~IWDl~---t~----~~i~~l~gH~~~VtsLafSPDG~~La 1021 (1074)
.+.......-..++.++.. + ++ .+.+... .+|.+..|-+. .+ +.++.+.. ...+-.+.......+|.
T Consensus 146 ~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~-k~G~~~Qy~L~~~~~g~v~~~lVR~f~~-~sQ~EGCVVDDe~g~LY 223 (381)
T PF02333_consen 146 DPAAPIATDLSEPYGLCLYRSPSTGALYAFVNG-KDGRVEQYELTDDGDGKVSATLVREFKV-GSQPEGCVVDDETGRLY 223 (381)
T ss_dssp BTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEE-TTSEEEEEEEEE-TTSSEEEEEEEEEE--SS-EEEEEEETTTTEEE
T ss_pred CCCcccccccccceeeEEeecCCCCcEEEEEec-CCceEEEEEEEeCCCCcEeeEEEEEecC-CCcceEEEEecccCCEE
Confidence 1111111122346666664 2 34 4555444 67878777652 33 24666644 34688899998888999
Q ss_pred EEECCCcEEEEECCC-----CcEEEEEeCC---CCeEEEEE----cCC-E-EEEEECCCcEEEEe
Q 001455 1022 YNSSASSLQIWLRGT-----QQKVGRISAG---SKITSLLT----AND-I-VLCGTETGLIKGWI 1072 (1074)
Q Consensus 1022 SGS~DGtIrIWDl~t-----g~~l~tL~~h---s~VtsLa~----dg~-~-LaSGs~DG~IrIWd 1072 (1074)
.|-++--|.-|+.+. ++.+....+. ..|-.++. +++ | |+|.=.+++..||+
T Consensus 224 vgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~ 288 (381)
T PF02333_consen 224 VGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYD 288 (381)
T ss_dssp EEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEE
T ss_pred EecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEe
Confidence 998887676666542 2333333332 23666663 233 4 44555677888886
No 460
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=63.99 E-value=2.1e+02 Score=34.01 Aligned_cols=32 Identities=28% Similarity=0.287 Sum_probs=25.6
Q ss_pred CCeEEEEEecCCCEEEEEECCCcEEEEECCCC
Q 001455 1006 TTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQ 1037 (1074)
Q Consensus 1006 ~~VtsLafSPDG~~LaSGS~DGtIrIWDl~tg 1037 (1074)
..|.+++..+..+.+++-+.+|.|++|++..+
T Consensus 190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~~ 221 (422)
T PF08801_consen 190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGPG 221 (422)
T ss_dssp --EEEEEEETTTTEEEEEESSE-EEEEEE-SS
T ss_pred hceeeEEecCCcCEEEEEeCCCcEEEEEEeCC
Confidence 34899999998899999999999999998753
No 461
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=63.85 E-value=1.6e+02 Score=37.62 Aligned_cols=115 Identities=13% Similarity=0.090 Sum_probs=68.7
Q ss_pred CCeEEEEEe--CCE--EEEEECCCcEEEEEccCCc----------e-----eeeccccccccCCCCCeEEEEEc--CCce
Q 001455 917 KGIKSMSVV--QGK--IYIGCMDSSIQELAVSNNV----------E-----REIKAPFKSWRLQSKPINSLVVY--KDWL 975 (1074)
Q Consensus 917 ~~V~sLa~s--dgk--LlaGs~DgsI~IwDl~tg~----------~-----~~i~~~~r~~~~h~~~I~sL~~s--pd~i 975 (1074)
+.|.-|.+. .+. +++++.||.|.+|.+.+-. . ..+. |. ....-+....++++| ....
T Consensus 101 HtIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~-P~-f~~~v~~SaWGLdIh~~~~~r 178 (717)
T PF08728_consen 101 HTINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIK-PF-FHLRVGASAWGLDIHDYKKSR 178 (717)
T ss_pred ceeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCC-CC-eEeecCCceeEEEEEecCcce
Confidence 346666554 333 5668999999999773200 0 0011 10 111124567788888 7777
Q ss_pred EEEEEecCCCeEEEEECCC--CC-eEEEccCCCCCeEEEEEecCC-----C-EEEEEECCCcEEEEEC
Q 001455 976 YSASSSVEGSNIKEWRRHR--KP-QISIAPEKGTTIQAMAVVEDF-----I-YLNYNSSASSLQIWLR 1034 (1074)
Q Consensus 976 ~las~S~dDgtI~IWDl~t--~~-~i~~l~gH~~~VtsLafSPDG-----~-~LaSGS~DGtIrIWDl 1034 (1074)
+++.++ ....|.+|-... .+ ....-..|...|.+|+|-++. . ++++++-.|.+-+|++
T Consensus 179 lIAVSs-Ns~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 179 LIAVSS-NSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEEec-CCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 776665 556677776432 11 111112366789999996533 2 7888999999988876
No 462
>PF05536 Neurochondrin: Neurochondrin
Probab=63.38 E-value=1.8e+02 Score=36.28 Aligned_cols=271 Identities=17% Similarity=0.161 Sum_probs=152.3
Q ss_pred ccchHHHHHHHHHHHhcCcchhhhhhhHHhhHhhhhcchhhhhhhhhcCCCchHH----HHHHhh-----cchhhHHHHH
Q 001455 295 DMLQDVILEQLLTAISASKEETVIRASVSILTTIILANESVIEDIKKKGLRLSDL----ATALKR-----NVPEAAILIY 365 (1074)
Q Consensus 295 ~~~~~~~i~~~~e~~~~s~~~~v~~~~v~il~~~~~~~~~~~~~~~~~~~~~~~~----~~~lk~-----~~~~a~vl~~ 365 (1074)
.+.+...|.-|.|++.+ .....+.++.||..+.+.-. .+.|.+.-..+.-+ +..++. .|.=-.+|-+
T Consensus 135 aLl~~g~v~~L~ei~~~--~~~~~E~Al~lL~~Lls~~~--~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~ 210 (543)
T PF05536_consen 135 ALLESGAVPALCEIIPN--QSFQMEIALNLLLNLLSRLG--QKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSA 210 (543)
T ss_pred HHHhcCCHHHHHHHHHh--CcchHHHHHHHHHHHHHhcc--hhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHH
Confidence 35566667788888777 77888999999888877644 33444332322222 223322 1334556677
Q ss_pred hcCCChhh----hhhccchhHHHHHHhccccccCcccccccCch--hhHHHHHHHHhhcc-------ccccchhh----h
Q 001455 366 LIKPSPTE----IKTLELLPTLVEVICTSKLYKGKLESVRLTPP--AASLMIIEVLVTAF-------DYATNNMH----L 428 (1074)
Q Consensus 366 l~~~~~~~----~~~~~~~~~l~~v~~~~~~~~~~~~~~~~~p~--~aa~~~l~~ll~~~-------d~~~~~~~----~ 428 (1074)
++.+.+.. .....|++.+..-|.. .++-+++|+ .+|+-+...|+..+ |...+... +
T Consensus 211 ~L~~~~~~~~~~~~~~~W~~~l~~gl~~-------iL~sr~~~~~R~~al~Laa~Ll~~~G~~wl~~~~~~~~~~F~~Ll 283 (543)
T PF05536_consen 211 FLPRSPILPLESPPSPKWLSDLRKGLRD-------ILQSRLTPSQRDPALNLAASLLDLLGPEWLFADDKKSGKKFLLLL 283 (543)
T ss_pred hcCcCCccccccCChhhhHHHHHHHHHH-------HHhcCCCHHHHHHHHHHHHHHHHHhChHhhcCCCCCCcccHHHHH
Confidence 77776321 3444566665544431 111133333 56666777777642 11101111 1
Q ss_pred hhhcchhhHhHHHHH-HhcCChHHHHHHHHHHHhhhhccCcchhHHHhhcCCc-chhhhhhcCCchhHHHHHHHHHHHhc
Q 001455 429 AAINSPRVLCGLLDV-ARHQNLEELISLATILVKCIQFDGQCRKYLSEFTAVA-PLACLLQSGEKRAIMIALEFFHEILR 506 (1074)
Q Consensus 429 ~~~~s~~~l~~l~~~-~~~~~~~e~~~~~~il~~C~~~dg~cr~~ia~~~~~~-~~~~ll~~~~~~~~~~a~~~l~ell~ 506 (1074)
..+.... ++-.++- ++..+.++.......|..|-.-=...-+|+++..+.. ..++ --.+++
T Consensus 284 v~l~~VE-ir~~L~~L~~~~~~~~~~~~~~~L~~cf~ilE~~I~~l~~~~~~~~~~~~----------------~~~l~k 346 (543)
T PF05536_consen 284 VNLACVE-IRMSLEELLEQLNPEEYPEKQRLLASCFSILEHFIGYLVRSLEEESLDLD----------------PDTLLK 346 (543)
T ss_pred HHHHHHH-HHHHhHHhhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhccccccCCCC----------------HHHHHH
Confidence 1111111 1111111 2336788888888889888777777777777755522 2222 122333
Q ss_pred cCc------hhhHHHHHHhhcc------CchhHHHHHHHHhhcccchhhHHHHHHHhhhccccCCCCCCcch--------
Q 001455 507 IPR------SSAIDLLQRIHKE------GNINILHILKLSLQQLQSDYQLLAANLLLQLDTLENTTGKSVFT-------- 566 (1074)
Q Consensus 507 l~r------~~~~~~l~~~~~~------~~~~~mh~ll~~lq~~~~~~~~~~a~lllqldll~~p~~~s~yr-------- 566 (1074)
+.+ +.+.++|+..+++ -.+.+..+|=.||-..+-..+.-+..|| |+|.+--+.+-++
T Consensus 347 l~~~l~e~~~~vle~L~~~~d~~~~d~~~vlAsvR~L~~WLaEe~~~lr~~v~~Ll---~~ll~~~~~~~~~~~~~~~~~ 423 (543)
T PF05536_consen 347 LRTSLSETFSAVLEYLRDVWDESQKDPDFVLASVRVLGAWLAEETSALRKEVYGLL---PFLLSLYRESFQEAEPAREGP 423 (543)
T ss_pred HHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHhChHHHHHHHHHHH---HHHHHHHhhhhhhcccccccc
Confidence 333 1255677777664 3466788888999998888888888776 4444433333332
Q ss_pred HHHHHHHHHHHhccCChhhHHHHHHHHHhcCcc
Q 001455 567 EEAMQVILKAVASEESSTMQLLSSFILSNIGGT 599 (1074)
Q Consensus 567 eea~~~~~~~l~~~~~~~~q~~~~~~l~~l~g~ 599 (1074)
=+++.-++=+|.+ -.+....+++++..||+
T Consensus 424 ~d~~r~lLPaL~~---lt~e~~gr~~l~~~~g~ 453 (543)
T PF05536_consen 424 LDFLRFLLPALCH---LTAEEEGRKILLSNGGW 453 (543)
T ss_pred hhHHHHHHHHHhh---hhccHHHHHHHHhCCcH
Confidence 3566667777754 34456678888888775
No 463
>PLN02193 nitrile-specifier protein
Probab=63.21 E-value=3.5e+02 Score=32.94 Aligned_cols=191 Identities=9% Similarity=0.067 Sum_probs=89.2
Q ss_pred CCCEEEEEeCC-------CeEEEEEccCCceEEEEEec-cCC----CeEEEccCCCeEEEEecC-----CeEEEEeCCCc
Q 001455 847 PGESLLSGSAD-------KTIGVWQMVQRKLELIEVIA-TKE----PIRKLDTYGKTIFASTQG-----HRMKVIDSSRT 909 (1074)
Q Consensus 847 dg~~LaSGS~D-------GtIrIWDl~tg~~~~~~~~~-h~~----~V~s~s~dg~~L~sgS~D-----gtI~VWDl~~~ 909 (1074)
++..++.|+.+ ..+.+||+.+.+.......+ ... .......++...+.|+.+ +.+.+||+...
T Consensus 175 ~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~ 254 (470)
T PLN02193 175 GNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTN 254 (470)
T ss_pred CCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCCC
Confidence 34445556643 24677888776543211111 111 111223445555566544 35778887632
Q ss_pred e-eeeec------CCCeEEEEEeCCEEEE-EECC-----CcEEEEEccCCceeeeccccccccCCCCCeEEEEEcCCceE
Q 001455 910 L-KDIYR------SKGIKSMSVVQGKIYI-GCMD-----SSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLY 976 (1074)
Q Consensus 910 l-~~l~~------~~~V~sLa~sdgkLla-Gs~D-----gsI~IwDl~tg~~~~i~~~~r~~~~h~~~I~sL~~spd~i~ 976 (1074)
. ..+.. ...-.+++..+++++. |+.+ ..+..||+.+.+......+.... ....-..+....+.++
T Consensus 255 ~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~--~~R~~~~~~~~~gkiy 332 (470)
T PLN02193 255 EWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSF--SIRGGAGLEVVQGKVW 332 (470)
T ss_pred EEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCC--CCCCCcEEEEECCcEE
Confidence 1 11111 1111233334677554 5543 34678888776554332110000 0111123334455556
Q ss_pred EEEEec--CCCeEEEEECCCCCeEEEccC---CCCCeEEEEEecCCCEEEEEECC--------------CcEEEEECCCC
Q 001455 977 SASSSV--EGSNIKEWRRHRKPQISIAPE---KGTTIQAMAVVEDFIYLNYNSSA--------------SSLQIWLRGTQ 1037 (1074)
Q Consensus 977 las~S~--dDgtI~IWDl~t~~~i~~l~g---H~~~VtsLafSPDG~~LaSGS~D--------------GtIrIWDl~tg 1037 (1074)
++.+.. .-..+.+||..+......... ........+..-++++++.|+.+ +.+.+||..+.
T Consensus 333 viGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~ 412 (470)
T PLN02193 333 VVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETL 412 (470)
T ss_pred EEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEEEECCEEEEECCccCCccccccCccceeccEEEEEcCcC
Confidence 554321 014588999887764433211 11111111223356777777743 24788888776
Q ss_pred cE
Q 001455 1038 QK 1039 (1074)
Q Consensus 1038 ~~ 1039 (1074)
+.
T Consensus 413 ~W 414 (470)
T PLN02193 413 QW 414 (470)
T ss_pred EE
Confidence 55
No 464
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=63.11 E-value=9.2 Score=48.55 Aligned_cols=60 Identities=23% Similarity=0.450 Sum_probs=44.5
Q ss_pred CCEEEEEECCCcEEEEECCCCCeeEEEEeccCCCCEEEEE-----------EcCCCCEEEEEeCCCeEEEEEcc
Q 001455 804 KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFS-----------LFEPGESLLSGSADKTIGVWQMV 866 (1074)
Q Consensus 804 ~~~LaSGs~DGtVrIWDl~t~~~~~i~tl~gH~~~VtsLa-----------fSpdg~~LaSGS~DGtIrIWDl~ 866 (1074)
.-++..+-.+|+|++.+.++... .-+.+|...++.++ .+|||..++.+..||.++.|.+.
T Consensus 195 ~~~ic~~~~~~~i~lL~~~ra~~---~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiy 265 (1283)
T KOG1916|consen 195 KVYICYGLKGGEIRLLNINRALR---SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIY 265 (1283)
T ss_pred cceeeeccCCCceeEeeechHHH---HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeee
Confidence 34678888899999888776432 33456877766654 47889889988889998888764
No 465
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=62.08 E-value=42 Score=30.01 Aligned_cols=68 Identities=22% Similarity=0.241 Sum_probs=46.3
Q ss_pred HHHHHhhccc-chhhHHHHHHHhhhccccCCCCCCcchHHHHHHHHHHHhccCChhhHHHHHHHHHhcCccccccCchhh
Q 001455 530 ILKLSLQQLQ-SDYQLLAANLLLQLDTLENTTGKSVFTEEAMQVILKAVASEESSTMQLLSSFILSNIGGTFSWTGEPYT 608 (1074)
Q Consensus 530 ~ll~~lq~~~-~~~~~~~a~lllqldll~~p~~~s~yreea~~~~~~~l~~~~~~~~q~~~~~~l~~l~g~fs~sG~~~~ 608 (1074)
.|+-.|++.+ +.-|--++..|- .+..++++..|++.| ..+++.++..|+.||-.+| ++=.
T Consensus 3 ~L~~~l~~~~~~~vr~~a~~~L~-----------~~~~~~~~~~L~~~l-~d~~~~vr~~a~~aL~~i~-------~~~~ 63 (88)
T PF13646_consen 3 ALLQLLQNDPDPQVRAEAARALG-----------ELGDPEAIPALIELL-KDEDPMVRRAAARALGRIG-------DPEA 63 (88)
T ss_dssp HHHHHHHTSSSHHHHHHHHHHHH-----------CCTHHHHHHHHHHHH-TSSSHHHHHHHHHHHHCCH-------HHHT
T ss_pred HHHHHHhcCCCHHHHHHHHHHHH-----------HcCCHhHHHHHHHHH-cCCCHHHHHHHHHHHHHhC-------CHHH
Confidence 3556664433 444544444443 334679999999999 4579999999999998884 4556
Q ss_pred HHHHHHHh
Q 001455 609 VAWLVKKA 616 (1074)
Q Consensus 609 ~~~llk~a 616 (1074)
...|.+..
T Consensus 64 ~~~L~~~l 71 (88)
T PF13646_consen 64 IPALIKLL 71 (88)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666654
No 466
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=62.04 E-value=3e+02 Score=31.89 Aligned_cols=49 Identities=14% Similarity=-0.067 Sum_probs=40.2
Q ss_pred CCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCeEEEEEcCCEEEEEEC
Q 001455 1016 DFIYLNYNSSASSLQIWLRGTQQKVGRISAGSKITSLLTANDIVLCGTE 1064 (1074)
Q Consensus 1016 DG~~LaSGS~DGtIrIWDl~tg~~l~tL~~hs~VtsLa~dg~~LaSGs~ 1064 (1074)
+|++.++-+..|.|.-+|.++|+........+...+++|.|+++++|-+
T Consensus 212 dgrLwvldsgtGev~~vD~~~G~~e~Va~vpG~~rGL~f~G~llvVgmS 260 (335)
T TIGR03032 212 QGKLWLLNSGRGELGYVDPQAGKFQPVAFLPGFTRGLAFAGDFAFVGLS 260 (335)
T ss_pred CCeEEEEECCCCEEEEEcCCCCcEEEEEECCCCCcccceeCCEEEEEec
Confidence 7888888888999999999888776666666678889999998887754
No 467
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=61.97 E-value=65 Score=37.07 Aligned_cols=150 Identities=17% Similarity=0.138 Sum_probs=83.2
Q ss_pred hhhHhHHHHHHhcCChHHHHHHHHH-HHhhhhcc--CcchhHHHhhcCCcchhhhhhcCCc--hhHHH---HHHHHHHHh
Q 001455 434 PRVLCGLLDVARHQNLEELISLATI-LVKCIQFD--GQCRKYLSEFTAVAPLACLLQSGEK--RAIMI---ALEFFHEIL 505 (1074)
Q Consensus 434 ~~~l~~l~~~~~~~~~~e~~~~~~i-l~~C~~~d--g~cr~~ia~~~~~~~~~~ll~~~~~--~~~~~---a~~~l~ell 505 (1074)
..++..+++.++.|..+|+.-|+.+ =+.|++.+ ..+.- |.+.+. .++...+..+.. ++|.. |+.+++-+.
T Consensus 85 ~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~e-i~~~~~-~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~ 162 (309)
T PF05004_consen 85 ETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEE-IFEELK-PVLKRILTDSSASPKARAACLEALAICTFVG 162 (309)
T ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHH-HHHHHH-HHHHHHHhCCccchHHHHHHHHHHHHHHHhh
Confidence 4457788888888988888877664 46899965 33333 333222 244456665533 33333 334444443
Q ss_pred ccCchhhHHHHHHhhccCchhHHH--HHHHHhhcc--------cchhhHHHHHHHhhhc---cccCCCCCCcchHHHHHH
Q 001455 506 RIPRSSAIDLLQRIHKEGNINILH--ILKLSLQQL--------QSDYQLLAANLLLQLD---TLENTTGKSVFTEEAMQV 572 (1074)
Q Consensus 506 ~l~r~~~~~~l~~~~~~~~~~~mh--~ll~~lq~~--------~~~~~~~~a~lllqld---ll~~p~~~s~yreea~~~ 572 (1074)
+-.-..+.. .+..|. -++.|++.. ++....++|.| ---= .+.++.+..-+-++++..
T Consensus 163 ~~d~~~~~~---------~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL-~aW~lLlt~~~~~~~~~~~~~~~~~ 232 (309)
T PF05004_consen 163 GSDEEETEE---------LMESLESIFLLSILKSDGNAPVVAAEDDAALVAAAL-SAWALLLTTLPDSKLEDLLEEALPA 232 (309)
T ss_pred cCChhHHHH---------HHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHH-HHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 333211111 112344 223344332 22223333332 1111 224455555667899999
Q ss_pred HHHHHhccCChhhHHHHHHHHHhc
Q 001455 573 ILKAVASEESSTMQLLSSFILSNI 596 (1074)
Q Consensus 573 ~~~~l~~~~~~~~q~~~~~~l~~l 596 (1074)
|.+-|++. +..+|+.|.++|..|
T Consensus 233 l~~lL~s~-d~~VRiAAGEaiAll 255 (309)
T PF05004_consen 233 LSELLDSD-DVDVRIAAGEAIALL 255 (309)
T ss_pred HHHHhcCC-CHHHHHHHHHHHHHH
Confidence 99999866 889999999999776
No 468
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=61.83 E-value=32 Score=26.36 Aligned_cols=40 Identities=13% Similarity=0.125 Sum_probs=28.9
Q ss_pred cCCCEEEEEE-CCCcEEEEECCCCcEEEEEeCCCCeEEEEE
Q 001455 1015 EDFIYLNYNS-SASSLQIWLRGTQQKVGRISAGSKITSLLT 1054 (1074)
Q Consensus 1015 PDG~~LaSGS-~DGtIrIWDl~tg~~l~tL~~hs~VtsLa~ 1054 (1074)
|++++|+.+. .+++|.++|..+++.+..+..+..-..+.+
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEEe
Confidence 5777666655 688999999999999988887543334433
No 469
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=61.78 E-value=36 Score=44.73 Aligned_cols=124 Identities=6% Similarity=-0.087 Sum_probs=70.0
Q ss_pred EECCCcEEEEEccCCceeeecccccccc------CCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEccCCC
Q 001455 932 GCMDSSIQELAVSNNVEREIKAPFKSWR------LQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKG 1005 (1074)
Q Consensus 932 Gs~DgsI~IwDl~tg~~~~i~~~~r~~~------~h~~~I~sL~~spd~i~las~S~dDgtI~IWDl~t~~~i~~l~gH~ 1005 (1074)
.+.+-.|..||+..-..-.... .+.+. .......++.|.|.-.........|+.|++..+........-..-.
T Consensus 120 tsng~~v~~fD~~~fs~s~~~~-~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p~t 198 (1405)
T KOG3630|consen 120 TSNGEAVYSFDLEEFSESRYET-TVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFPVT 198 (1405)
T ss_pred ecCCceEEEEehHhhhhhhhhh-ccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhhhhhhcccCcc
Confidence 4445568888887632211100 11111 1123344566666543333333356777777654322211112345
Q ss_pred CCeEEEEEecCCCEEEEEECCCcEEEEECCCCcEEEEEeC-----CCCeEEEEEcCC
Q 001455 1006 TTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISA-----GSKITSLLTAND 1057 (1074)
Q Consensus 1006 ~~VtsLafSPDG~~LaSGS~DGtIrIWDl~tg~~l~tL~~-----hs~VtsLa~dg~ 1057 (1074)
..+++++|+|.|+.++.|-..|++.-|.. +++....+.+ ...|.++.|-+.
T Consensus 199 ~~~Tav~WSprGKQl~iG~nnGt~vQy~P-~leik~~ip~Pp~~e~yrvl~v~Wl~t 254 (1405)
T KOG3630|consen 199 NSQTAVLWSPRGKQLFIGRNNGTEVQYEP-SLEIKSEIPEPPVEENYRVLSVTWLST 254 (1405)
T ss_pred cceeeEEeccccceeeEecCCCeEEEeec-ccceeecccCCCcCCCcceeEEEEecc
Confidence 57899999999999999999999988863 2333333332 255999998754
No 470
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=61.59 E-value=41 Score=40.07 Aligned_cols=154 Identities=11% Similarity=0.095 Sum_probs=87.6
Q ss_pred EccCCCeEEEEecCCeEEEEeCCCceeeee------cCCC---eE-EEE-EeCCE-EEEEECCCcEEEE-EccCCceeee
Q 001455 885 LDTYGKTIFASTQGHRMKVIDSSRTLKDIY------RSKG---IK-SMS-VVQGK-IYIGCMDSSIQEL-AVSNNVEREI 951 (1074)
Q Consensus 885 ~s~dg~~L~sgS~DgtI~VWDl~~~l~~l~------~~~~---V~-sLa-~sdgk-LlaGs~DgsI~Iw-Dl~tg~~~~i 951 (1074)
+.|+|+.++.-+. .++.++++.+...... .+.. |+ .+. .+.|. ++++..||.|.-| |++.+.. .-
T Consensus 228 L~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWFdvr~~~~-p~ 305 (733)
T COG4590 228 LTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWFDVRRDGQ-PH 305 (733)
T ss_pred ECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeeeeeecCCC-Cc
Confidence 5799998887766 7788888763221111 1111 22 111 13454 7888999998877 5554332 11
Q ss_pred ccccccccCCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEccCCCCCeEEEEEecCCCEEEEEECCCcEEE
Q 001455 952 KAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQI 1031 (1074)
Q Consensus 952 ~~~~r~~~~h~~~I~sL~~spd~i~las~S~dDgtI~IWDl~t~~~i~~l~gH~~~VtsLafSPDG~~LaSGS~DGtIrI 1031 (1074)
...++.++....++..+....+..-..+.. ..|++..+.....+.+- +..--..+.-+++||++.++++-. .|.|++
T Consensus 306 l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~-~~G~L~~f~st~~~~lL-~~~~~~~~~~~~~Sp~~~~Ll~e~-~gki~~ 382 (733)
T COG4590 306 LNHIRNFKLAPAEVQFLLPETNRKGFYSLY-RNGTLQSFYSTSEKLLL-FERAYQAPQLVAMSPNQAYLLSED-QGKIRL 382 (733)
T ss_pred ceeeeccccCcccceeeccccccceEEEEc-CCCceeeeecccCccee-hhhhhcCcceeeeCcccchheeec-CCceEE
Confidence 222334444445555555444444444444 45677776644333221 111222456789999999998864 578999
Q ss_pred EECCCCcEEEEE
Q 001455 1032 WLRGTQQKVGRI 1043 (1074)
Q Consensus 1032 WDl~tg~~l~tL 1043 (1074)
+.+++..+--++
T Consensus 383 ~~l~Nr~Peisw 394 (733)
T COG4590 383 AQLENRNPEISW 394 (733)
T ss_pred EEecCCCCCccH
Confidence 988776554333
No 471
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=59.91 E-value=1.7e+02 Score=37.50 Aligned_cols=139 Identities=13% Similarity=0.170 Sum_probs=79.0
Q ss_pred CCEEEEEECCCcEEEEECCCCCeeE----EEEec----------------cCCCCEEEEEEcC--CCCEEEEEeCCCeEE
Q 001455 804 KGLLCSGFSDGSIKMWDIKKQSAML----VWDVK----------------EHRKAVTSFSLFE--PGESLLSGSADKTIG 861 (1074)
Q Consensus 804 ~~~LaSGs~DGtVrIWDl~t~~~~~----i~tl~----------------gH~~~VtsLafSp--dg~~LaSGS~DGtIr 861 (1074)
.++++.|. .+.|.||+.+.....+ ...+. .-...|+.|.... +...|+.|.+||.|.
T Consensus 49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~ 127 (717)
T PF08728_consen 49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVL 127 (717)
T ss_pred CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEE
Confidence 45555544 7889999986532211 00110 0112355555443 344588999999999
Q ss_pred EEEccC-------C----c-------eEEEEEeccCCCeEEEccC----CCeEEEEecCCeEEEEeCCC------ceeee
Q 001455 862 VWQMVQ-------R----K-------LELIEVIATKEPIRKLDTY----GKTIFASTQGHRMKVIDSSR------TLKDI 913 (1074)
Q Consensus 862 IWDl~t-------g----~-------~~~~~~~~h~~~V~s~s~d----g~~L~sgS~DgtI~VWDl~~------~l~~l 913 (1074)
+|.+++ . . .............++++.+ .+.|+++++...|.||-... .....
T Consensus 128 ~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~ 207 (717)
T PF08728_consen 128 AYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPSH 207 (717)
T ss_pred EEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEEEEecccccccccccc
Confidence 997632 0 0 0011112223344555543 55777777778888775441 11122
Q ss_pred ecCCCeEEEEEe------CC--EEEEEECCCcEEEEEc
Q 001455 914 YRSKGIKSMSVV------QG--KIYIGCMDSSIQELAV 943 (1074)
Q Consensus 914 ~~~~~V~sLa~s------dg--kLlaGs~DgsI~IwDl 943 (1074)
...+.|.+|+|- +| .+++++-.|.+.+|++
T Consensus 208 ~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 208 QHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred ccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 345679999993 23 3566888999999888
No 472
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=59.12 E-value=3.4e+02 Score=31.56 Aligned_cols=191 Identities=14% Similarity=0.085 Sum_probs=93.9
Q ss_pred EEEEEeCCCeEEEEEccCCceEEEEEecc-CCCeEE-EccCCCeEEEEecCCeEEEEeCC-CceeeeecCCC----eEEE
Q 001455 850 SLLSGSADKTIGVWQMVQRKLELIEVIAT-KEPIRK-LDTYGKTIFASTQGHRMKVIDSS-RTLKDIYRSKG----IKSM 922 (1074)
Q Consensus 850 ~LaSGS~DGtIrIWDl~tg~~~~~~~~~h-~~~V~s-~s~dg~~L~sgS~DgtI~VWDl~-~~l~~l~~~~~----V~sL 922 (1074)
.++.+..||.|.-.|..++.......... ...+.. .......+++++.++.++.+|.. +...-...... ....
T Consensus 70 ~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~~~ 149 (370)
T COG1520 70 TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGKIYVGSWDGKLYALDASTGTLVWSRNVGGSPYYASPP 149 (370)
T ss_pred eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCeEEEecccceEEEEECCCCcEEEEEecCCCeEEecCc
Confidence 35556778888888888877443222211 011111 11123458888999988888884 43333222222 1112
Q ss_pred EEeCCEEEEEECCCcEEEEEccCCceeeecccc--ccccCCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEE
Q 001455 923 SVVQGKIYIGCMDSSIQELAVSNNVEREIKAPF--KSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISI 1000 (1074)
Q Consensus 923 a~sdgkLlaGs~DgsI~IwDl~tg~~~~i~~~~--r~~~~h~~~I~sL~~spd~i~las~S~dDgtI~IWDl~t~~~i~~ 1000 (1074)
.+.++.++.++.++.+...|..+|...-..... ........++ ...+..++...+. ++.+.-.|..+|...-.
T Consensus 150 v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~----~~~~~vy~~~~~~-~~~~~a~~~~~G~~~w~ 224 (370)
T COG1520 150 VVGDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPA----IASGTVYVGSDGY-DGILYALNAEDGTLKWS 224 (370)
T ss_pred EEcCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCce----eecceEEEecCCC-cceEEEEEccCCcEeee
Confidence 223677777778899999998887763321110 0111112222 2222222221110 23455555555554333
Q ss_pred cc-----CCCCC--eEEEE---EecCCCEEEEEECCCcEEEEECCCCcEEEEEeCC
Q 001455 1001 AP-----EKGTT--IQAMA---VVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAG 1046 (1074)
Q Consensus 1001 l~-----gH~~~--VtsLa---fSPDG~~LaSGS~DGtIrIWDl~tg~~l~tL~~h 1046 (1074)
.. +.... ...+. ..-++ -+..++.++.+...|..+|+.+-.+..+
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~v~v~~-~~~~~~~~g~~~~l~~~~G~~~W~~~~~ 279 (370)
T COG1520 225 QKVSQTIGRTAISTTPAVDGGPVYVDG-GVYAGSYGGKLLCLDADTGELIWSFPAG 279 (370)
T ss_pred eeeecccCcccccccccccCceEEECC-cEEEEecCCeEEEEEcCCCceEEEEecc
Confidence 21 11100 00000 00122 2355666787888888999888777764
No 473
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.18 E-value=1.3e+02 Score=35.34 Aligned_cols=135 Identities=17% Similarity=0.145 Sum_probs=91.2
Q ss_pred HhcCcchhhhhhhHHhhHhhhhcchhhhhhhhhcCCCchHHHH-HHhhc---ch-hhHHHHHhcCCCh---hhhhhccch
Q 001455 309 ISASKEETVIRASVSILTTIILANESVIEDIKKKGLRLSDLAT-ALKRN---VP-EAAILIYLIKPSP---TEIKTLELL 380 (1074)
Q Consensus 309 ~~~s~~~~v~~~~v~il~~~~~~~~~~~~~~~~~~~~~~~~~~-~lk~~---~~-~a~vl~~l~~~~~---~~~~~~~~~ 380 (1074)
+..|.+..|....-+- -..+..|+.+|+++...+|++-+-.- +...+ +. .|..-++-|..-. -|+.+..=+
T Consensus 216 ll~s~d~dvqyyctta-isnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~l 294 (550)
T KOG4224|consen 216 LLKSGDLDVQYYCTTA-ISNIAVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSL 294 (550)
T ss_pred hhccCChhHHHHHHHH-hhhhhhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCc
Confidence 4567888999888887 55678999999999999999876444 54444 32 4554454444332 367777889
Q ss_pred hHHHHHHhccccccCcccccccCchhhHHHHHHHHhhccccccchhhhhhhcchhhHhHHHHHHhcCChHH-HHHHHHHH
Q 001455 381 PTLVEVICTSKLYKGKLESVRLTPPAASLMIIEVLVTAFDYATNNMHLAAINSPRVLCGLLDVARHQNLEE-LISLATIL 459 (1074)
Q Consensus 381 ~~l~~v~~~~~~~~~~~~~~~~~p~~aa~~~l~~ll~~~d~~~~~~~~~~~~s~~~l~~l~~~~~~~~~~e-~~~~~~il 459 (1074)
|++|+.|+..- .|. -.|+|+-+..+ +...-|..-+.--|+|+-|++-++.|+-|| +-+|++.|
T Consensus 295 P~lv~Llqs~~----~pl------ilasVaCIrni------sihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstL 358 (550)
T KOG4224|consen 295 PLLVELLQSPM----GPL------ILASVACIRNI------SIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTL 358 (550)
T ss_pred hHHHHHHhCcc----hhH------HHHHHHHHhhc------ccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHH
Confidence 99999996422 111 26677766544 122233444456789999999999998886 66666665
Q ss_pred H
Q 001455 460 V 460 (1074)
Q Consensus 460 ~ 460 (1074)
-
T Consensus 359 r 359 (550)
T KOG4224|consen 359 R 359 (550)
T ss_pred H
Confidence 3
No 474
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=57.99 E-value=1.3 Score=39.61 Aligned_cols=57 Identities=14% Similarity=0.068 Sum_probs=39.6
Q ss_pred hhhhhhhHHhhHhhhhcchhhhhhhhhcCCCchHHHH-HHhh-cchhhHHHHHhcCCChh
Q 001455 315 ETVIRASVSILTTIILANESVIEDIKKKGLRLSDLAT-ALKR-NVPEAAILIYLIKPSPT 372 (1074)
Q Consensus 315 ~~v~~~~v~il~~~~~~~~~~~~~~~~~~~~~~~~~~-~lk~-~~~~a~vl~~l~~~~~~ 372 (1074)
-++++.||.+ ..+.++|+.+|+.|++.+...||+++ -|.. .+..|..|.-.|.-|..
T Consensus 11 ~~lM~dPVi~-~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l~pn~~Lk~~I~~~~~ 69 (73)
T PF04564_consen 11 GELMRDPVIL-PSGHTYERSAIERWLEQNGGTDPFTRQPLSESDLIPNRALKSAIEEWCA 69 (73)
T ss_dssp SSB-SSEEEE-TTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGSEE-HHHHHHHHHHHH
T ss_pred CcHhhCceeC-CcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcccceECHHHHHHHHHHHH
Confidence 3567778865 99999999999999999999999998 4444 45566666655554443
No 475
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=57.35 E-value=3e+02 Score=37.05 Aligned_cols=137 Identities=16% Similarity=0.215 Sum_probs=84.8
Q ss_pred EEEEEEC---------CCcEEEEECCC-----CCee---EEE--EeccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEc-
Q 001455 806 LLCSGFS---------DGSIKMWDIKK-----QSAM---LVW--DVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQM- 865 (1074)
Q Consensus 806 ~LaSGs~---------DGtVrIWDl~t-----~~~~---~i~--tl~gH~~~VtsLafSpdg~~LaSGS~DGtIrIWDl- 865 (1074)
+++.|.. -|.+.|+|+-. +++. .+. ..+.-+++|..++= -+| +|++|. .-.|.+|++
T Consensus 1048 ylavGT~~~~gEDv~~RGr~hi~diIeVVPepgkP~t~~KlKel~~eE~KGtVsavce-V~G-~l~~~~-GqKI~v~~l~ 1124 (1366)
T KOG1896|consen 1048 YLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPGKPFTKNKLKELYIEEQKGTVSAVCE-VRG-HLLSSQ-GQKIIVRKLD 1124 (1366)
T ss_pred eEEEEEeecccccccCcccEEEEEEEEecCCCCCCcccceeeeeehhhcccceEEEEE-ecc-EEEEcc-CcEEEEEEec
Confidence 7887763 38999999732 2111 111 12356688887773 345 455554 346899999
Q ss_pred cCCceEEEEEeccCCCeEEEccCCCeEEEEecCCeEEEEeCCCceeeee--c----CCCeEEEEEe-CC-E--EEEEECC
Q 001455 866 VQRKLELIEVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSSRTLKDIY--R----SKGIKSMSVV-QG-K--IYIGCMD 935 (1074)
Q Consensus 866 ~tg~~~~~~~~~h~~~V~s~s~dg~~L~sgS~DgtI~VWDl~~~l~~l~--~----~~~V~sLa~s-dg-k--LlaGs~D 935 (1074)
+.+......+....-.+.++..-.++++.|.--..|.+.-.......+. . .-.+.+..|- +| . ++++..+
T Consensus 1125 r~~~ligVaFiD~~~yv~s~~~vknlIl~gDV~ksisfl~fqeep~rlsL~srd~~~l~v~s~EFLVdg~~L~flvsDa~ 1204 (1366)
T KOG1896|consen 1125 RDSELIGVAFIDLPLYVHSMKVVKNLILAGDVMKSISFLGFQEEPYRLSLLSRDFEPLNVYSTEFLVDGSNLSFLVSDAD 1204 (1366)
T ss_pred cCCcceeeEEeccceeEEehhhhhhheehhhhhhceEEEEEccCceEEEEeecCCchhhceeeeeEEcCCeeEEEEEcCC
Confidence 5555555555555555666667778888888777777766654333322 1 2236777773 44 3 6668889
Q ss_pred CcEEEEEccC
Q 001455 936 SSIQELAVSN 945 (1074)
Q Consensus 936 gsI~IwDl~t 945 (1074)
++|++|-..-
T Consensus 1205 rNi~vy~Y~P 1214 (1366)
T KOG1896|consen 1205 RNIHVYMYAP 1214 (1366)
T ss_pred CcEEEEEeCC
Confidence 9999886654
No 476
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=57.27 E-value=5.2e+02 Score=33.03 Aligned_cols=161 Identities=13% Similarity=0.137 Sum_probs=87.5
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCeEEEEEccCCceEEEEE--eccCCCe------EEEc--cCCCeEEEEec-CC---eE
Q 001455 836 RKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEV--IATKEPI------RKLD--TYGKTIFASTQ-GH---RM 901 (1074)
Q Consensus 836 ~~~VtsLafSpdg~~LaSGS~DGtIrIWDl~tg~~~~~~~--~~h~~~V------~s~s--~dg~~L~sgS~-Dg---tI 901 (1074)
.+.|..+.|.+++..++..-.+|.|.+||...+....... ..+...+ ..+. ....++++.+. ++ ..
T Consensus 129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~y 208 (670)
T PF10395_consen 129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKLSY 208 (670)
T ss_pred ccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcEEE
Confidence 6789999999999999999999999999994433222111 1111111 1122 22345555554 32 56
Q ss_pred EEEeCC---Cceeeee----cCCC--eEEEEEeCCEEEEEECCCcEEEEEccCCceeeeccccccccCCCCCeEEE-EEc
Q 001455 902 KVIDSS---RTLKDIY----RSKG--IKSMSVVQGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSL-VVY 971 (1074)
Q Consensus 902 ~VWDl~---~~l~~l~----~~~~--V~sLa~sdgkLlaGs~DgsI~IwDl~tg~~~~i~~~~r~~~~h~~~I~sL-~~s 971 (1074)
+++.+. .....+. .... -..+++.+|+++.- .++.|.+|++..-+..........+......+.++ ..+
T Consensus 209 kL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l-~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl~~~s 287 (670)
T PF10395_consen 209 KLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQL-SKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSLKPPS 287 (670)
T ss_pred EEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEE-eCCEEEEEEcCCceEEEEEEechhhccccccceEeecCC
Confidence 777772 1222221 1222 22444558887766 67899999997654322111111122221233344 344
Q ss_pred CCceEEEEEecCCCeEEEEECCCCCeEEEc
Q 001455 972 KDWLYSASSSVEGSNIKEWRRHRKPQISIA 1001 (1074)
Q Consensus 972 pd~i~las~S~dDgtI~IWDl~t~~~i~~l 1001 (1074)
++.+. ++. ++.|.+.|+.-...+..+
T Consensus 288 ~nRvL-Ls~---~nkIyLld~~~~siLse~ 313 (670)
T PF10395_consen 288 PNRVL-LSV---NNKIYLLDLKFESILSEF 313 (670)
T ss_pred CCeEE-EEc---CCEEEEEeehhhhhhhhh
Confidence 55444 433 468999997655444333
No 477
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=56.95 E-value=5.5e+02 Score=33.24 Aligned_cols=70 Identities=16% Similarity=0.192 Sum_probs=44.6
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCeEEEEEccC----------Cc--eEEEEEe--------ccCCCeEE--EccC---CCe
Q 001455 837 KAVTSFSLFEPGESLLSGSADKTIGVWQMVQ----------RK--LELIEVI--------ATKEPIRK--LDTY---GKT 891 (1074)
Q Consensus 837 ~~VtsLafSpdg~~LaSGS~DGtIrIWDl~t----------g~--~~~~~~~--------~h~~~V~s--~s~d---g~~ 891 (1074)
-.|..|.++|+|.+|+-.|..|.+.+ .+.. |+ ..|.... .....|.. |.|. +..
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v~V~-~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~ 163 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGVVVL-ELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH 163 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcEEEE-EeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence 46888999999999988887765444 3321 11 1222111 12223433 4443 568
Q ss_pred EEEEecCCeEEEEeCC
Q 001455 892 IFASTQGHRMKVIDSS 907 (1074)
Q Consensus 892 L~sgS~DgtI~VWDl~ 907 (1074)
+++.+.|+++++||+.
T Consensus 164 l~vLtsdn~lR~y~~~ 179 (717)
T PF10168_consen 164 LVVLTSDNTLRLYDIS 179 (717)
T ss_pred EEEEecCCEEEEEecC
Confidence 9999999999999986
No 478
>PLN02153 epithiospecifier protein
Probab=56.83 E-value=3.6e+02 Score=31.04 Aligned_cols=138 Identities=14% Similarity=0.115 Sum_probs=65.9
Q ss_pred CCEEEE-EECC-----CcEEEEEccCCceeeeccccccccCCCCCeEEEEEcCCceEEEEEecCC---------CeEEEE
Q 001455 926 QGKIYI-GCMD-----SSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEG---------SNIKEW 990 (1074)
Q Consensus 926 dgkLla-Gs~D-----gsI~IwDl~tg~~~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S~dD---------gtI~IW 990 (1074)
++++++ |+.+ ..+.+||..+.+.................-.+++...+.+|++.+...+ ..+.+|
T Consensus 85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~y 164 (341)
T PLN02153 85 GTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAY 164 (341)
T ss_pred CCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEE
Confidence 677554 5532 3578889887655433110000001111233445556666666553211 247788
Q ss_pred ECCCCCeEEEccCC---CC-CeEEEEEecCCCEEEEEECC-------------CcEEEEECCCCcEEEEEe-C--CCC--
Q 001455 991 RRHRKPQISIAPEK---GT-TIQAMAVVEDFIYLNYNSSA-------------SSLQIWLRGTQQKVGRIS-A--GSK-- 1048 (1074)
Q Consensus 991 Dl~t~~~i~~l~gH---~~-~VtsLafSPDG~~LaSGS~D-------------GtIrIWDl~tg~~l~tL~-~--hs~-- 1048 (1074)
|..+..-....... .. .-.+++ .-++++.+.|+.+ ..+.+||..+.+....-. + ..+
T Consensus 165 d~~~~~W~~l~~~~~~~~~r~~~~~~-~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~ 243 (341)
T PLN02153 165 NIADGKWVQLPDPGENFEKRGGAGFA-VVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARS 243 (341)
T ss_pred ECCCCeEeeCCCCCCCCCCCCcceEE-EECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCcc
Confidence 88766533211100 11 011222 2355655555432 468889987765543211 1 111
Q ss_pred -eEEEEEcCCEEEEEEC
Q 001455 1049 -ITSLLTANDIVLCGTE 1064 (1074)
Q Consensus 1049 -VtsLa~dg~~LaSGs~ 1064 (1074)
..++.+++++++.|+.
T Consensus 244 ~~~~~~~~~~iyv~GG~ 260 (341)
T PLN02153 244 VFAHAVVGKYIIIFGGE 260 (341)
T ss_pred eeeeEEECCEEEEECcc
Confidence 3335566777777775
No 479
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=56.43 E-value=35 Score=27.70 Aligned_cols=31 Identities=6% Similarity=0.058 Sum_probs=25.5
Q ss_pred CCeEEEEEecCC---CEEEEEECCCcEEEEECCC
Q 001455 1006 TTIQAMAVVEDF---IYLNYNSSASSLQIWLRGT 1036 (1074)
Q Consensus 1006 ~~VtsLafSPDG---~~LaSGS~DGtIrIWDl~t 1036 (1074)
+.|+++.|||+. .+|+.+-.-|.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 358999999854 4888887889999999885
No 480
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=56.11 E-value=3.9e+02 Score=31.30 Aligned_cols=62 Identities=11% Similarity=0.047 Sum_probs=29.5
Q ss_pred EEECCCcEEEEECCC--CCeeEEEEeccC-CCCEEEEEEcCCCCEEEEEeCCC-----------eEEEEEccCCceEE
Q 001455 809 SGFSDGSIKMWDIKK--QSAMLVWDVKEH-RKAVTSFSLFEPGESLLSGSADK-----------TIGVWQMVQRKLEL 872 (1074)
Q Consensus 809 SGs~DGtVrIWDl~t--~~~~~i~tl~gH-~~~VtsLafSpdg~~LaSGS~DG-----------tIrIWDl~tg~~~~ 872 (1074)
.|..+..+.++|+.. .....+..+... ......+. -++...+.||.+. .+..||..+.+...
T Consensus 45 gG~~~~~~~~~d~~~~~~~W~~l~~~p~~~r~~~~~v~--~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~ 120 (376)
T PRK14131 45 LGSAGTSWYKLDLNAPSKGWTKIAAFPGGPREQAVAAF--IDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQK 120 (376)
T ss_pred eCCCCCeEEEEECCCCCCCeEECCcCCCCCcccceEEE--ECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEe
Confidence 344445567778763 223222222111 11112222 3556666666432 46778887765433
No 481
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=56.05 E-value=2.5e+02 Score=32.87 Aligned_cols=58 Identities=14% Similarity=0.036 Sum_probs=32.4
Q ss_pred CCeEEEEEcCCceEEEEEecCCCeEEEE-ECCCC-----C---eEEEccC----CCCCeEEEEEecCCCEEEEEE
Q 001455 963 KPINSLVVYKDWLYSASSSVEGSNIKEW-RRHRK-----P---QISIAPE----KGTTIQAMAVVEDFIYLNYNS 1024 (1074)
Q Consensus 963 ~~I~sL~~spd~i~las~S~dDgtI~IW-Dl~t~-----~---~i~~l~g----H~~~VtsLafSPDG~~LaSGS 1024 (1074)
...+.+.+.++++++.. .+ .|..| |.... + ....+.. +......++|.|||.+.++-+
T Consensus 72 ~~p~Gi~~~~~GlyV~~---~~-~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G 142 (367)
T TIGR02604 72 SMVTGLAVAVGGVYVAT---PP-DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHG 142 (367)
T ss_pred CCccceeEecCCEEEeC---CC-eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecc
Confidence 34577888888854432 22 34434 44321 1 1222322 234477899999998776644
No 482
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=55.53 E-value=4.7e+02 Score=31.99 Aligned_cols=223 Identities=14% Similarity=0.041 Sum_probs=101.3
Q ss_pred cCCCCEEEEEeCCCeEEEEEccCCc-eEEEEEecc-CCCeEEE---ccCCCeEEEEecCC--eEEEEeCC--Cceeeeec
Q 001455 845 FEPGESLLSGSADKTIGVWQMVQRK-LELIEVIAT-KEPIRKL---DTYGKTIFASTQGH--RMKVIDSS--RTLKDIYR 915 (1074)
Q Consensus 845 Spdg~~LaSGS~DGtIrIWDl~tg~-~~~~~~~~h-~~~V~s~---s~dg~~L~sgS~Dg--tI~VWDl~--~~l~~l~~ 915 (1074)
..++..++-+..+|.+..-.+.... .......+. .....++ ...+.+++.|+..| .+.-|... .....+..
T Consensus 219 ~~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~~~~~N 298 (504)
T PF10433_consen 219 DKDGDRILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEVLDSLPN 298 (504)
T ss_dssp STTSSEEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESESEEEEEEE--
T ss_pred cCCCCEEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEEEEeccC
Confidence 4566778889999999887766533 111222222 2223333 22234888887555 44444432 23334445
Q ss_pred CCCeEEEEEe------CC------EEEEEE---CCCcEEEEEccCCceeeeccccccccCCCCCeEEEEEcC-CceEEEE
Q 001455 916 SKGIKSMSVV------QG------KIYIGC---MDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYK-DWLYSAS 979 (1074)
Q Consensus 916 ~~~V~sLa~s------dg------kLlaGs---~DgsI~IwDl~tg~~~~i~~~~r~~~~h~~~I~sL~~sp-d~i~las 979 (1074)
-++|.++.+. .. ++++++ .+|.+++..-.-+-..... ....+.+ -..+..+.... +..+++.
T Consensus 299 ~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~Gi~~~~~~~-~~~~l~~-v~~iW~l~~~~~~~~~lv~ 376 (504)
T PF10433_consen 299 WGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRNGIGIEGLEL-ASSELPG-VTGIWTLKLSSSDHSYLVL 376 (504)
T ss_dssp --SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEESBEEE--EE-EEEEEST-EEEEEEE-SSSSSBSEEEE
T ss_pred cCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEeccCCceeeee-eccCCCC-ceEEEEeeecCCCceEEEE
Confidence 6778888873 22 677654 4677877643211110000 0000000 11222222221 1344444
Q ss_pred EecCCCeEEEEECC---CCCeEEEcc--CCCCCeEEEEE--ecCCCEEEEEECCCcEEEEECCCCcEEEEEeCC--CCeE
Q 001455 980 SSVEGSNIKEWRRH---RKPQISIAP--EKGTTIQAMAV--VEDFIYLNYNSSASSLQIWLRGTQQKVGRISAG--SKIT 1050 (1074)
Q Consensus 980 ~S~dDgtI~IWDl~---t~~~i~~l~--gH~~~VtsLaf--SPDG~~LaSGS~DGtIrIWDl~tg~~l~tL~~h--s~Vt 1050 (1074)
..+ ..-+++.+. ....+.... +-......+.. .. +.+++=.. ...|++.+...++....+... ..|.
T Consensus 377 S~~--~~T~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~~~~-~~~ivQVt-~~~i~l~~~~~~~~~~~w~~~~~~~I~ 452 (504)
T PF10433_consen 377 SFP--NETRVLQISEGDDGEEVEEVEEDGFDTDEPTLAAGNVG-DGRIVQVT-PKGIRLIDLEDGKLTQEWKPPAGSIIV 452 (504)
T ss_dssp EES--SEEEEEEES----SSEEEEE---TS-SSS-EEEEEEET-TTEEEEEE-SSEEEEEESSSTSEEEEEE-TTS---S
T ss_pred EcC--CceEEEEEecccCCcchhhhhhccCCCCCCCeEEEEcC-CCeEEEEe-cCeEEEEECCCCeEEEEEeCCCCCeEE
Confidence 432 234455443 233221111 11111112211 12 33333333 345888888888887776544 4488
Q ss_pred EEEEcCCEEEEEECCCcEEEEec
Q 001455 1051 SLLTANDIVLCGTETGLIKGWIP 1073 (1074)
Q Consensus 1051 sLa~dg~~LaSGs~DG~IrIWdi 1073 (1074)
+.+.++.+++.+-.+|.+..+.+
T Consensus 453 ~a~~~~~~v~v~~~~~~~~~~~~ 475 (504)
T PF10433_consen 453 AASINDPQVLVALSGGELVYFEL 475 (504)
T ss_dssp EEEESSSEEEEEE-TTEEEEEEE
T ss_pred EEEECCCEEEEEEeCCcEEEEEE
Confidence 88888888888888888877753
No 483
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=55.39 E-value=1.8e+02 Score=35.56 Aligned_cols=138 Identities=10% Similarity=0.016 Sum_probs=80.5
Q ss_pred CCCCEE-EEEeCCCeEEEEEccCCceEEEEEeccCCCeEEEccCCC-------eEEEEecCCeEEEEeCC--C-ceeeee
Q 001455 846 EPGESL-LSGSADKTIGVWQMVQRKLELIEVIATKEPIRKLDTYGK-------TIFASTQGHRMKVIDSS--R-TLKDIY 914 (1074)
Q Consensus 846 pdg~~L-aSGS~DGtIrIWDl~tg~~~~~~~~~h~~~V~s~s~dg~-------~L~sgS~DgtI~VWDl~--~-~l~~l~ 914 (1074)
.+...| ..|+....++-.|+..|+.+-... -+...+..+.|... .-++|-.+..|.-.|.+ + .+....
T Consensus 477 ~dssli~~dg~~~~kLykmDIErGkvveeW~-~~ddvvVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~e 555 (776)
T COG5167 477 NDSSLIYLDGGERDKLYKMDIERGKVVEEWD-LKDDVVVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVE 555 (776)
T ss_pred CCcceEEecCCCcccceeeecccceeeeEee-cCCcceeecCCchhHHhcCccceEEeecccceEEecccccCCceeeee
Confidence 344443 355556666777887777544333 23333555544322 23344444555555654 1 222222
Q ss_pred cCC-----CeEEEEE-eCCEEEEEECCCcEEEEEccCCceeeeccccccccCCCCCeEEEEEcCCceEEEEEecCCCeEE
Q 001455 915 RSK-----GIKSMSV-VQGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIK 988 (1074)
Q Consensus 915 ~~~-----~V~sLa~-sdgkLlaGs~DgsI~IwDl~tg~~~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S~dDgtI~ 988 (1074)
... ...|..- .+|.+++|+..|-|++||--.-+.++ .+.+-+..|..+....+|.++++.+ ...+.
T Consensus 556 sKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKt------alP~lG~aIk~idvta~Gk~ilaTC--k~yll 627 (776)
T COG5167 556 SKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKT------ALPGLGDAIKHIDVTANGKHILATC--KNYLL 627 (776)
T ss_pred ehhccccccccccccccCceEEEecCCCceeeehhhcchhhh------cCcccccceeeeEeecCCcEEEEee--cceEE
Confidence 222 2223333 38889999999999999976533222 2345588899999999999988776 35676
Q ss_pred EEEC
Q 001455 989 EWRR 992 (1074)
Q Consensus 989 IWDl 992 (1074)
+-|+
T Consensus 628 L~d~ 631 (776)
T COG5167 628 LTDV 631 (776)
T ss_pred EEec
Confidence 7664
No 484
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=54.07 E-value=83 Score=39.99 Aligned_cols=156 Identities=16% Similarity=0.120 Sum_probs=109.6
Q ss_pred eeccchHHHHHHHHHHHhcCcchhhhhhhHHhhHhhhhcc----hhhhhhhhhcCCCchHHHHHHhhc---ch-hhHHHH
Q 001455 293 KYDMLQDVILEQLLTAISASKEETVIRASVSILTTIILAN----ESVIEDIKKKGLRLSDLATALKRN---VP-EAAILI 364 (1074)
Q Consensus 293 ~~~~~~~~~i~~~~e~~~~s~~~~v~~~~v~il~~~~~~~----~~~~~~~~~~~~~~~~~~~~lk~~---~~-~a~vl~ 364 (1074)
..+|-+|.||+=.+--|--|+++.++|++.=+|.-+-..+ +.+++.++++..-+.+++.+|+.. |. .++.++
T Consensus 511 ~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~L 590 (717)
T KOG1048|consen 511 SEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGAL 590 (717)
T ss_pred ceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHH
Confidence 3458899999988888889999999999988877665544 577888899999999999999984 44 555555
Q ss_pred Hh--cCCChhhhhhccchhHHHHHHhccccccCcccccccCch---hhHHHHHHHHhhccccccchhhhhhhcchhhHhH
Q 001455 365 YL--IKPSPTEIKTLELLPTLVEVICTSKLYKGKLESVRLTPP---AASLMIIEVLVTAFDYATNNMHLAAINSPRVLCG 439 (1074)
Q Consensus 365 ~l--~~~~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~~p~---~aa~~~l~~ll~~~d~~~~~~~~~~~~s~~~l~~ 439 (1074)
+= +++...++..-.-+|-||+-|-.++.. + ..+. .++.+.|-.++. .|..+++.+...+++..
T Consensus 591 rNls~d~rnk~ligk~a~~~lv~~Lp~~~~~--~-----~~sedtv~~vc~tl~niv~-----~~~~nAkdl~~~~g~~k 658 (717)
T KOG1048|consen 591 RNLSRDIRNKELIGKYAIPDLVRCLPGSGPS--T-----SLSEDTVRAVCHTLNNIVR-----KNVLNAKDLLEIKGIPK 658 (717)
T ss_pred hhhccCchhhhhhhcchHHHHHHhCcCCCCC--c-----CchHHHHHHHHHhHHHHHH-----HhHHHHHHHHhccChHH
Confidence 53 578888888889999999999876641 1 1111 222334444432 45678888888888888
Q ss_pred HHHHHhcCChHHHHHHHHHHH
Q 001455 440 LLDVARHQNLEELISLATILV 460 (1074)
Q Consensus 440 l~~~~~~~~~~e~~~~~~il~ 460 (1074)
|+.-...-.-++-..||+.++
T Consensus 659 L~~I~~s~~S~k~~kaAs~vL 679 (717)
T KOG1048|consen 659 LRLISKSQHSPKEFKAASSVL 679 (717)
T ss_pred HHHHhcccCCHHHHHHHHHHH
Confidence 865444333323334444444
No 485
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=53.65 E-value=2.8e+02 Score=36.73 Aligned_cols=207 Identities=14% Similarity=0.173 Sum_probs=94.1
Q ss_pred hHhHHHHHHhcCChHHHHHHHHHHHhhhhccCcchhHHHhhcCCcchhhhhhcCCchhHHHHHHHHHHHhcc-C------
Q 001455 436 VLCGLLDVARHQNLEELISLATILVKCIQFDGQCRKYLSEFTAVAPLACLLQSGEKRAIMIALEFFHEILRI-P------ 508 (1074)
Q Consensus 436 ~l~~l~~~~~~~~~~e~~~~~~il~~C~~~dg~cr~~ia~~~~~~~~~~ll~~~~~~~~~~a~~~l~ell~l-~------ 508 (1074)
.+..|+..|+..+..-|..|+..|-. .| ..--...++++|...+...|..|+.-|.+|... +
T Consensus 622 ~~~~L~~~L~D~d~~VR~~Av~~L~~----~~-------~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~~~~L~ 690 (897)
T PRK13800 622 SVAELAPYLADPDPGVRRTAVAVLTE----TT-------PPGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPPAPALR 690 (897)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhh----hc-------chhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCchHHHH
Confidence 34566666666666666666666652 00 111123455566666666666666666665321 1
Q ss_pred ----------chhhHHHHHHhhccCchhHHHHHHHHhhcccchhhHHHHHHHhhhccccCCCCCCcchHHHHHHHHHHHh
Q 001455 509 ----------RSSAIDLLQRIHKEGNINILHILKLSLQQLQSDYQLLAANLLLQLDTLENTTGKSVFTEEAMQVILKAVA 578 (1074)
Q Consensus 509 ----------r~~~~~~l~~~~~~~~~~~mh~ll~~lq~~~~~~~~~~a~lllqldll~~p~~~s~yreea~~~~~~~l~ 578 (1074)
|..+.+.|..++.+. .-.|+-+|+...++=|--++.-|-+++ +.+.|+.+|.
T Consensus 691 ~~L~~~d~~VR~~A~~aL~~~~~~~----~~~l~~~L~D~d~~VR~~Av~aL~~~~--------------~~~~l~~~l~ 752 (897)
T PRK13800 691 DHLGSPDPVVRAAALDVLRALRAGD----AALFAAALGDPDHRVRIEAVRALVSVD--------------DVESVAGAAT 752 (897)
T ss_pred HHhcCCCHHHHHHHHHHHHhhccCC----HHHHHHHhcCCCHHHHHHHHHHHhccc--------------CcHHHHHHhc
Confidence 011222232222111 123444444444444444444333321 1123444443
Q ss_pred ccCChhhHHHHHHHHHhcCccccccCchhhHHHHHHHhCCCcchhh-hh---hccCCccc---chhhhh-chhhhh-HHH
Q 001455 579 SEESSTMQLLSSFILSNIGGTFSWTGEPYTVAWLVKKAGLNSSWLQ-NM---IRNFDWLD---QSLQDR-GVDSWS-SKI 649 (1074)
Q Consensus 579 ~~~~~~~q~~~~~~l~~l~g~fs~sG~~~~~~~llk~ag~~~~~~~-~~---~~~~~~~d---~~~~e~-~~~~w~-~~~ 649 (1074)
. +++.++..++++|..+|. +++-...-|++..+=.++.-+ .- +.++.... ..+... ..++|+ |..
T Consensus 753 D-~~~~VR~~aa~aL~~~~~-----~~~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~ 826 (897)
T PRK13800 753 D-ENREVRIAVAKGLATLGA-----GGAPAGDAVRALTGDPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQG 826 (897)
T ss_pred C-CCHHHHHHHHHHHHHhcc-----ccchhHHHHHHHhcCCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHH
Confidence 3 477888888888877654 222222334433321221111 00 01111000 011111 334574 333
Q ss_pred HHHHHh-cCc-hhHHHHHhhhhcCCccccc
Q 001455 650 AKSIIE-IGK-PIYYALEKGLKSKTKSVCR 677 (1074)
Q Consensus 650 a~~l~~-~~~-~~l~aLs~~l~s~~~~L~~ 677 (1074)
|..-|+ .|. .-+.+|...+.+++..+.+
T Consensus 827 Aa~aL~~l~~~~a~~~L~~~L~D~~~~VR~ 856 (897)
T PRK13800 827 AARALAGAAADVAVPALVEALTDPHLDVRK 856 (897)
T ss_pred HHHHHHhccccchHHHHHHHhcCCCHHHHH
Confidence 333333 453 4677888888888777775
No 486
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=53.07 E-value=1.5e+02 Score=34.40 Aligned_cols=110 Identities=7% Similarity=0.076 Sum_probs=0.0
Q ss_pred CCeEEEEEe-CCEEEEEECCCcEEEEEccCCce-eeeccccccccCCCCCeEEEEEcC-----CceEEEEEec------C
Q 001455 917 KGIKSMSVV-QGKIYIGCMDSSIQELAVSNNVE-REIKAPFKSWRLQSKPINSLVVYK-----DWLYSASSSV------E 983 (1074)
Q Consensus 917 ~~V~sLa~s-dgkLlaGs~DgsI~IwDl~tg~~-~~i~~~~r~~~~h~~~I~sL~~sp-----d~i~las~S~------d 983 (1074)
+..+.|+|. +|+++.+...|.|++++ ..+.. ..+................+++|| ...|+..... .
T Consensus 2 ~~P~~~a~~pdG~l~v~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 2 NNPRSMAFLPDGRLLVAERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp SSEEEEEEETTSCEEEEETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred CCceEEEEeCCCcEEEEeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Q ss_pred CCeEEEEECCCC-----------CeEEEccCCCCCeEEEEEecCCCEEEEEECCC
Q 001455 984 GSNIKEWRRHRK-----------PQISIAPEKGTTIQAMAVVEDFIYLNYNSSAS 1027 (1074)
Q Consensus 984 DgtI~IWDl~t~-----------~~i~~l~gH~~~VtsLafSPDG~~LaSGS~DG 1027 (1074)
+..|.-|....+ ............-..|.|.|||.+.++.+..+
T Consensus 81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~ 135 (331)
T PF07995_consen 81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGG 135 (331)
T ss_dssp EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TT
T ss_pred ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCC
No 487
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=52.91 E-value=2.7e+02 Score=32.48 Aligned_cols=192 Identities=17% Similarity=0.158 Sum_probs=109.9
Q ss_pred CchhHHHHHHHHHhhhhhccCccccchhhhHHHHHHHHHhccCCCCceeccchHHHHHHHHHHHhcCcchhhhhhhHHhh
Q 001455 246 DAKSELLEIIEKAISSLFFSGDLRKCNKDYVVEVTTLYKMLNSKTGVKYDMLQDVILEQLLTAISASKEETVIRASVSIL 325 (1074)
Q Consensus 246 ~~~~~~~~~l~~ai~~l~~s~~l~~~e~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~e~~~~s~~~~v~~~~v~il 325 (1074)
.+..|++..|+.++..|- +....+-+ ++.-+|++-+ .++-++|+-+.+.+-....|.-|
T Consensus 10 KtP~ElVr~l~e~L~~L~-~~~~~~~~-k~~eeisK~L-------------------~~mK~IL~G~~e~ep~~e~v~qL 68 (335)
T PF08569_consen 10 KTPAELVRSLREALEKLD-SKSDKKRE-KAQEEISKYL-------------------QQMKEILYGDGEPEPNPEQVAQL 68 (335)
T ss_dssp --HHHHHHHHHHHHHHHH-SS-HHHHH-HHHHHHHHHH-------------------HHHHHHHHS-SS----HHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhc-cccCcchh-hHHHHHHHHH-------------------HHHHHHhcCCCCCCCCHHHHHHH
Confidence 567788999999998886 22223344 4554555543 34444555555554444443332
Q ss_pred HhhhhcchhhhhhhhhcCCCchHHHHHHhhcchhhHHHHHhcCCChhhhhhccchhHHHHHHhccccccCcccccccCch
Q 001455 326 TTIILANESVIEDIKKKGLRLSDLATALKRNVPEAAILIYLIKPSPTEIKTLELLPTLVEVICTSKLYKGKLESVRLTPP 405 (1074)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~a~vl~~l~~~~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~~p~ 405 (1074)
+ .|+.+.++++.|+..|..-+- .-+
T Consensus 69 a---------------------------------------------~Ei~~~dll~~Li~~L~~L~f----------Esr 93 (335)
T PF08569_consen 69 A---------------------------------------------QEIYRSDLLYLLIRNLPKLDF----------ESR 93 (335)
T ss_dssp H---------------------------------------------HHHHHHTHHHHHHHTGGGS-H----------HHH
T ss_pred H---------------------------------------------HHHHHhCHHHHHHHHhhhCCC----------ccc
Confidence 2 234444555665555543211 113
Q ss_pred hhHHHHHHHHhhccccccchhhhhhhc-c-hhhHhHHHHHHhcCChHHHHHHHHHHHhhhhccCcchhHHHhhcCCcchh
Q 001455 406 AASLMIIEVLVTAFDYATNNMHLAAIN-S-PRVLCGLLDVARHQNLEELISLATILVKCIQFDGQCRKYLSEFTAVAPLA 483 (1074)
Q Consensus 406 ~aa~~~l~~ll~~~d~~~~~~~~~~~~-s-~~~l~~l~~~~~~~~~~e~~~~~~il~~C~~~dg~cr~~ia~~~~~~~~~ 483 (1074)
+.+..+...++--.-.......+..|. - |.+|..|+...+ +.|=-..+..||--|++.+.-||..+. .-....+.
T Consensus 94 Kdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~--~~dial~~g~mlRec~k~e~l~~~iL~-~~~f~~ff 170 (335)
T PF08569_consen 94 KDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYE--NPDIALNCGDMLRECIKHESLAKIILY-SECFWKFF 170 (335)
T ss_dssp HHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGG--STTTHHHHHHHHHHHTTSHHHHHHHHT-SGGGGGHH
T ss_pred ccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhc--CccccchHHHHHHHHHhhHHHHHHHhC-cHHHHHHH
Confidence 444445555554311111102233333 3 777888876555 666678888999999999999996665 44666677
Q ss_pred hhhhcCCchhHHHHHHHHHHHhccCchhhHHHH
Q 001455 484 CLLQSGEKRAIMIALEFFHEILRIPRSSAIDLL 516 (1074)
Q Consensus 484 ~ll~~~~~~~~~~a~~~l~ell~l~r~~~~~~l 516 (1074)
+..+...=...+.|+.-|.|||.-++..+-+||
T Consensus 171 ~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl 203 (335)
T PF08569_consen 171 KYVQLPNFDIASDAFSTFKELLTRHKKLVAEFL 203 (335)
T ss_dssp HHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHH
T ss_pred HHhcCCccHhHHHHHHHHHHHHhccHHHHHHHH
Confidence 777777777788899999999988875555554
No 488
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=50.10 E-value=4.5e+02 Score=30.18 Aligned_cols=26 Identities=8% Similarity=0.125 Sum_probs=16.5
Q ss_pred CCCEEEEEeCC-----------CeEEEEEccCCceEE
Q 001455 847 PGESLLSGSAD-----------KTIGVWQMVQRKLEL 872 (1074)
Q Consensus 847 dg~~LaSGS~D-----------GtIrIWDl~tg~~~~ 872 (1074)
++...+.|+.+ ..+..||..++....
T Consensus 63 ~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~ 99 (346)
T TIGR03547 63 DGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQK 99 (346)
T ss_pred CCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEec
Confidence 56666667653 246778888776543
No 489
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=50.00 E-value=29 Score=44.13 Aligned_cols=141 Identities=17% Similarity=0.231 Sum_probs=84.4
Q ss_pred eEEEEecCCeEEEEeCC-Ccee----eee--cCCCeEEEEEeCCEEEEEECCCcEEEEEccCCceeeeccccccccCCCC
Q 001455 891 TIFASTQGHRMKVIDSS-RTLK----DIY--RSKGIKSMSVVQGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSK 963 (1074)
Q Consensus 891 ~L~sgS~DgtI~VWDl~-~~l~----~l~--~~~~V~sLa~sdgkLlaGs~DgsI~IwDl~tg~~~~i~~~~r~~~~h~~ 963 (1074)
.++.|+.++.+.++.-. ...+ ... .+..+.++.++.+.+.+|.-||++-.|--.-+..-.. .|.........
T Consensus 549 Tic~gtq~ssisissss~~s~ke~~~~~~spe~~~v~~l~~ss~Slgagl~dgt~a~y~rap~gSwd~-ep~~~~~~g~l 627 (925)
T KOG3522|consen 549 TICLGTQTSSISISSSSLDSIKEVTSEPPSPEHESVKLLLFSSGSLGAGLIDGTLAVYGRAPSGSWDG-EPNISIPTGSL 627 (925)
T ss_pred cccccCccceeEEeeccCCcccceeccCCCCchhhhhhhhccccccccCccCCccccccCCCCCCCCC-CCccccccCCc
Confidence 57778888888888754 1111 111 1345777777777777777777776553322111000 01122233456
Q ss_pred CeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEcc---CCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCC
Q 001455 964 PINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAP---EKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQ 1037 (1074)
Q Consensus 964 ~I~sL~~spd~i~las~S~dDgtI~IWDl~t~~~i~~l~---gH~~~VtsLafSPDG~~LaSGS~DGtIrIWDl~tg 1037 (1074)
++.+..+..+-.+.. .||.|.++...+........ .|...|+++.+..+|-+++-.+.|- ++.++.++.
T Consensus 628 Pvrsla~~ed~~was----~gG~V~vi~~tt~~~~~~leahqee~~~Vthm~~~~~gVwvafasG~~-~rlfhtetl 699 (925)
T KOG3522|consen 628 PVRSLAFQEDFVWAS----EGGCVHVIPSTTFIRSWDLEAHQEEAHSVTHMLYLDNGVWVAFASGDE-ERLFHTETL 699 (925)
T ss_pred cccchhhhhceeeee----cCCceEEEechhccccchhHHHHhhcceEEEEEeeCCceEEEEcCCCE-EEEeccccc
Confidence 777777777654432 57899999976654433333 3566899999999998888877553 444455443
No 490
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=49.60 E-value=4.7e+02 Score=30.29 Aligned_cols=51 Identities=12% Similarity=0.227 Sum_probs=35.6
Q ss_pred EEECCCcEEEEECCCCcEEEEEeCCCC---eEEEE--------EcCCEEEEEECCCcEEEEec
Q 001455 1022 YNSSASSLQIWLRGTQQKVGRISAGSK---ITSLL--------TANDIVLCGTETGLIKGWIP 1073 (1074)
Q Consensus 1022 SGS~DGtIrIWDl~tg~~l~tL~~hs~---VtsLa--------~dg~~LaSGs~DG~IrIWdi 1073 (1074)
.|-.-|.|-+||. +|+.++++...+. -+.++ ++|++|+---.||+|..||+
T Consensus 217 ~G~G~G~VdvFd~-~G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~ 278 (336)
T TIGR03118 217 AGAGLGYVNVFTL-NGQLLRRVASSGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDP 278 (336)
T ss_pred cCCCcceEEEEcC-CCcEEEEeccCCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecC
Confidence 3444578999984 5678888865533 34444 34778887777999999996
No 491
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=49.18 E-value=60 Score=38.93 Aligned_cols=74 Identities=9% Similarity=0.064 Sum_probs=54.1
Q ss_pred EccCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCC-----eEEEEEcC-------------C----
Q 001455 1000 IAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAGSK-----ITSLLTAN-------------D---- 1057 (1074)
Q Consensus 1000 ~l~gH~~~VtsLafSPDG~~LaSGS~DGtIrIWDl~tg~~l~tL~~hs~-----VtsLa~dg-------------~---- 1057 (1074)
.+......+.+++.+|++++.|+...=|.|.++|+.++..++.++|--. |....... +
T Consensus 302 ~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~ 381 (415)
T PF14655_consen 302 GLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALF 381 (415)
T ss_pred eeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEE
Confidence 3444555688999999999999987779999999999999988887622 22211111 1
Q ss_pred EEEEEECCCcEEEEec
Q 001455 1058 IVLCGTETGLIKGWIP 1073 (1074)
Q Consensus 1058 ~LaSGs~DG~IrIWdi 1073 (1074)
.++-+-.-|.|.||++
T Consensus 382 LvIyaprRg~lEvW~~ 397 (415)
T PF14655_consen 382 LVIYAPRRGILEVWSM 397 (415)
T ss_pred EEEEeccCCeEEEEec
Confidence 4456777899999986
No 492
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=49.16 E-value=5.8e+02 Score=31.19 Aligned_cols=243 Identities=12% Similarity=0.099 Sum_probs=112.1
Q ss_pred CCEEEEEECCCcEEEEECCCCCee-EEEEeccC-CCCEEEEEEcCCC-CEEEEEeCCCeEEEEEccCCceEEEEEeccCC
Q 001455 804 KGLLCSGFSDGSIKMWDIKKQSAM-LVWDVKEH-RKAVTSFSLFEPG-ESLLSGSADKTIGVWQMVQRKLELIEVIATKE 880 (1074)
Q Consensus 804 ~~~LaSGs~DGtVrIWDl~t~~~~-~i~tl~gH-~~~VtsLafSpdg-~~LaSGS~DGtIrIWDl~tg~~~~~~~~~h~~ 880 (1074)
+..++-+..+|.+..-.+...... .+..+ +. ....+++++..+| .+|+.||.-|.=.++.+.............-+
T Consensus 222 ~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~-g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~~~~~N~~ 300 (504)
T PF10433_consen 222 GDRILLQDEDGDLYLLTLDNDGGSISITYL-GTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEVLDSLPNWG 300 (504)
T ss_dssp SSEEEEEETTSEEEEEEEEEEEEEEEEEEE-EE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESESEEEEEEE----
T ss_pred CCEEEEEeCCCeEEEEEEEECCCeEEEEEc-CCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEEEEeccCcC
Confidence 447888999999988877653211 12222 33 4556677776665 46777776555555555555555555566667
Q ss_pred CeEEEcc-----C-CC------eEEEEe---cCCeEEEEeCCCc----eeeeecCCCeE---EEEEeC--CEEEEEECCC
Q 001455 881 PIRKLDT-----Y-GK------TIFAST---QGHRMKVIDSSRT----LKDIYRSKGIK---SMSVVQ--GKIYIGCMDS 936 (1074)
Q Consensus 881 ~V~s~s~-----d-g~------~L~sgS---~DgtI~VWDl~~~----l~~l~~~~~V~---sLa~sd--gkLlaGs~Dg 936 (1074)
||..+.. . .. .+++++ .+|.+++..-.-. ......-.+++ .+.... +.++..+...
T Consensus 301 Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~Gi~~~~~~~~~~~l~~v~~iW~l~~~~~~~~~lv~S~~~ 380 (504)
T PF10433_consen 301 PIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRNGIGIEGLELASSELPGVTGIWTLKLSSSDHSYLVLSFPN 380 (504)
T ss_dssp SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEESBEEE--EEEEEEESTEEEEEEE-SSSSSBSEEEEEESS
T ss_pred CccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEeccCCceeeeeeccCCCCceEEEEeeecCCCceEEEEEcCC
Confidence 7776421 1 11 555554 5678888764411 11111111233 333221 3333333334
Q ss_pred cEEEEEcc---CCcee-eeccccccccCCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEcc-CCCCCeEEE
Q 001455 937 SIQELAVS---NNVER-EIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAP-EKGTTIQAM 1011 (1074)
Q Consensus 937 sI~IwDl~---tg~~~-~i~~~~r~~~~h~~~I~sL~~spd~i~las~S~dDgtI~IWDl~t~~~i~~l~-gH~~~VtsL 1011 (1074)
.-+++.+. .+... .. .. ..+......+.+-.+. ++..+=.. ...|++.+...+....... .....|.+.
T Consensus 381 ~T~vl~~~~~d~~e~~~e~-~~-~~f~~~~~Tl~~~~~~-~~~ivQVt---~~~i~l~~~~~~~~~~~w~~~~~~~I~~a 454 (504)
T PF10433_consen 381 ETRVLQISEGDDGEEVEEV-EE-DGFDTDEPTLAAGNVG-DGRIVQVT---PKGIRLIDLEDGKLTQEWKPPAGSIIVAA 454 (504)
T ss_dssp EEEEEEES----SSEEEEE-----TS-SSS-EEEEEEET-TTEEEEEE---SSEEEEEESSSTSEEEEEE-TTS---SEE
T ss_pred ceEEEEEecccCCcchhhh-hh-ccCCCCCCCeEEEEcC-CCeEEEEe---cCeEEEEECCCCeEEEEEeCCCCCeEEEE
Confidence 44455553 11211 11 00 1222223333333333 33332222 2457888876666554332 233345544
Q ss_pred EEecCCCEEEEEECCCcEEEEECCCCcEEEEEe------CCCCeEEEEEc
Q 001455 1012 AVVEDFIYLNYNSSASSLQIWLRGTQQKVGRIS------AGSKITSLLTA 1055 (1074)
Q Consensus 1012 afSPDG~~LaSGS~DGtIrIWDl~tg~~l~tL~------~hs~VtsLa~d 1055 (1074)
+.. +.+++.+-.++.+..+.+.......... ..+.|.|+..+
T Consensus 455 ~~~--~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eis~l~i~ 502 (504)
T PF10433_consen 455 SIN--DPQVLVALSGGELVYFELDDNKISVSDNDETILELDNEISCLSIE 502 (504)
T ss_dssp EES--SSEEEEEE-TTEEEEEEEETTEEEEEEE----EE-SS-EEEEE--
T ss_pred EEC--CCEEEEEEeCCcEEEEEEECCceeeeeeccccccCCCceEEEEeC
Confidence 443 4556666668889999887766643322 23557776643
No 493
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=48.74 E-value=8.3e+02 Score=32.88 Aligned_cols=73 Identities=15% Similarity=0.184 Sum_probs=56.4
Q ss_pred hhHHHHHhhhhcCCcccccccchhhHhhhccccCCCcchhhhHHHHHHHhHHhhcCCCchhhhhHhhhhccccccc
Q 001455 659 PIYYALEKGLKSKTKSVCRDSLTTIAWLSFEVSKSPNSVRHSACQILLDGVEQFLHPGLELEERLLACLCIYNYAS 734 (1074)
Q Consensus 659 ~~l~aLs~~l~s~~~~L~~~cL~~~~WL~~~Ls~lpd~l~~~Ar~~LL~eL~~~L~~s~~LeERvLasLSL~nfs~ 734 (1074)
+++...=++|.++.|.+..+++-.+.-|+.- ++.+++-.+++.+.+.+...+..........-+..++.||..
T Consensus 389 ~Il~~Vl~~l~DphprVr~AA~naigQ~std---l~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E 461 (1075)
T KOG2171|consen 389 KILPIVLNGLNDPHPRVRYAALNAIGQMSTD---LQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSE 461 (1075)
T ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHhhhhh---hcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHH
Confidence 4777777889999999999999887765544 445677788888888888888887776666666667777664
No 494
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=47.64 E-value=2.3e+02 Score=34.22 Aligned_cols=121 Identities=13% Similarity=0.251 Sum_probs=0.0
Q ss_pred CcEEEEECCCCCeeEEEEeccCCCCEEEEEEcCCCCE---EEEEeCCCeEEEEEc-cCCceEEEEEeccCCC--------
Q 001455 814 GSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGES---LLSGSADKTIGVWQM-VQRKLELIEVIATKEP-------- 881 (1074)
Q Consensus 814 GtVrIWDl~t~~~~~i~tl~gH~~~VtsLafSpdg~~---LaSGS~DGtIrIWDl-~tg~~~~~~~~~h~~~-------- 881 (1074)
.++.+||..+.+......+-.....+..+.|..+-.. ++.+.-.++|..|-- ..++.....+......
T Consensus 222 ~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp 301 (461)
T PF05694_consen 222 HSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILP 301 (461)
T ss_dssp -EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---
T ss_pred CeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCccccc
Q ss_pred ------------eEE--EccCCCeEEEEe-cCCeEEEEeCC-----CceeeeecCCCe-----------------EEEEE
Q 001455 882 ------------IRK--LDTYGKTIFAST-QGHRMKVIDSS-----RTLKDIYRSKGI-----------------KSMSV 924 (1074)
Q Consensus 882 ------------V~s--~s~dg~~L~sgS-~DgtI~VWDl~-----~~l~~l~~~~~V-----------------~sLa~ 924 (1074)
++. ++.+.++|++.+ ..|.|+.||+. +....+.-++.| .-+..
T Consensus 302 ~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvql 381 (461)
T PF05694_consen 302 EMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQL 381 (461)
T ss_dssp GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE
T ss_pred ccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEE
Q ss_pred e-CCE-EEEEEC
Q 001455 925 V-QGK-IYIGCM 934 (1074)
Q Consensus 925 s-dgk-LlaGs~ 934 (1074)
+ ||+ ++...+
T Consensus 382 S~DGkRlYvTnS 393 (461)
T PF05694_consen 382 SLDGKRLYVTNS 393 (461)
T ss_dssp -TTSSEEEEE--
T ss_pred ccCCeEEEEEee
No 495
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=47.22 E-value=1.3e+02 Score=34.12 Aligned_cols=69 Identities=12% Similarity=0.036 Sum_probs=49.1
Q ss_pred CeEEEEECCCCCeEEEccCCCCCeEEEEEecCCCEEEEEE------CCCcEEEEECCCCcEEEEEeC------CCCeEEE
Q 001455 985 SNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNS------SASSLQIWLRGTQQKVGRISA------GSKITSL 1052 (1074)
Q Consensus 985 gtI~IWDl~t~~~i~~l~gH~~~VtsLafSPDG~~LaSGS------~DGtIrIWDl~tg~~l~tL~~------hs~VtsL 1052 (1074)
..|.+||..+.+....-.+-.+.|+++.|..+.+.++.|. ....+..||..+...- .+.+ .++|+.+
T Consensus 16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~-~~~~~~s~~ipgpv~a~ 94 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWS-SLGGGSSNSIPGPVTAL 94 (281)
T ss_pred CEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeee-ecCCcccccCCCcEEEE
Confidence 3689999888776665555667899999997777777775 3556888998776542 2222 2568777
Q ss_pred EE
Q 001455 1053 LT 1054 (1074)
Q Consensus 1053 a~ 1054 (1074)
.+
T Consensus 95 ~~ 96 (281)
T PF12768_consen 95 TF 96 (281)
T ss_pred Ee
Confidence 76
No 496
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=47.18 E-value=1.8e+02 Score=33.24 Aligned_cols=131 Identities=15% Similarity=0.203 Sum_probs=74.5
Q ss_pred HHHHHHHHhc-CcchhhhhhhHHhhHhhhhcchhhhhhhhh---cCC--CchHHHHHHhhc---ch--hhHHHHHhcCCC
Q 001455 302 LEQLLTAISA-SKEETVIRASVSILTTIILANESVIEDIKK---KGL--RLSDLATALKRN---VP--EAAILIYLIKPS 370 (1074)
Q Consensus 302 i~~~~e~~~~-s~~~~v~~~~v~il~~~~~~~~~~~~~~~~---~~~--~~~~~~~~lk~~---~~--~a~vl~~l~~~~ 370 (1074)
..-|+..|.+ +.++++++-..+++.++...++...+.+.. .++ -..+|.++|.++ +. -+.+|--++.-.
T Consensus 57 ~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~ 136 (312)
T PF03224_consen 57 ASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQG 136 (312)
T ss_dssp -----HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTST
T ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcC
Confidence 3344444444 489999999999999999999866655554 122 467777777774 32 566666776655
Q ss_pred hhhhhh--ccchhHHHHHHhccccccCcccccccCchhhHHHHHHHHhhccccccchhhhhhhcchhhHhHHHHHH
Q 001455 371 PTEIKT--LELLPTLVEVICTSKLYKGKLESVRLTPPAASLMIIEVLVTAFDYATNNMHLAAINSPRVLCGLLDVA 444 (1074)
Q Consensus 371 ~~~~~~--~~~~~~l~~v~~~~~~~~~~~~~~~~~p~~aa~~~l~~ll~~~d~~~~~~~~~~~~s~~~l~~l~~~~ 444 (1074)
+..... .+.++.++..+++.-..+.... ...++..++.|+..- .........++++.|.+.+
T Consensus 137 ~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~------~~~av~~L~~LL~~~------~~R~~f~~~~~v~~l~~iL 200 (312)
T PF03224_consen 137 PKRSEKLVKEALPKLLQWLSSQLSSSDSEL------QYIAVQCLQNLLRSK------EYRQVFWKSNGVSPLFDIL 200 (312)
T ss_dssp TT--HHHHHHHHHHHHHHHH-TT-HHHH---------HHHHHHHHHHHTSH------HHHHHHHTHHHHHHHHHHH
T ss_pred CccccchHHHHHHHHHHHHHHhhcCCCcch------HHHHHHHHHHHhCcc------hhHHHHHhcCcHHHHHHHH
Confidence 555554 4788999999986222101000 155677888887532 2333334688888998888
No 497
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=46.64 E-value=5e+02 Score=29.76 Aligned_cols=127 Identities=15% Similarity=0.145 Sum_probs=59.4
Q ss_pred CcEEEEEccCCceeeeccccccccCCCCCeEEEEEcCCceEEEEEecCCC----eEEEEECCCC--CeE--EEccC----
Q 001455 936 SSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGS----NIKEWRRHRK--PQI--SIAPE---- 1003 (1074)
Q Consensus 936 gsI~IwDl~tg~~~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S~dDg----tI~IWDl~t~--~~i--~~l~g---- 1003 (1074)
..+..||..+++....... ......-.++....+.++++.+....+ .+..++.+.. .-. ..+..
T Consensus 168 ~~v~~YDp~t~~W~~~~~~----p~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~m~~~r~~ 243 (346)
T TIGR03547 168 KNVLSYDPSTNQWRNLGEN----PFLGTAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPPLPPPKSS 243 (346)
T ss_pred ceEEEEECCCCceeECccC----CCCcCCCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecCCCCCCCCC
Confidence 4678888887665443211 100112234555566677765542211 2444554222 211 11110
Q ss_pred -CCCCeEEEEEecCCCEEEEEECC----------------------CcEEEEECCCCcE--EEEEeCC-CCeEEEEEcCC
Q 001455 1004 -KGTTIQAMAVVEDFIYLNYNSSA----------------------SSLQIWLRGTQQK--VGRISAG-SKITSLLTAND 1057 (1074)
Q Consensus 1004 -H~~~VtsLafSPDG~~LaSGS~D----------------------GtIrIWDl~tg~~--l~tL~~h-s~VtsLa~dg~ 1057 (1074)
|.......+...+++..+.|+.+ ..+.+||..+.+. +..+... ....++..+++
T Consensus 244 ~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~~~~~~~~~~~~~ 323 (346)
T TIGR03547 244 SQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVGKLPQGLAYGVSVSWNNG 323 (346)
T ss_pred ccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccccCCCCCCceeeEEEEcCCE
Confidence 01101111233477777887753 1467888665443 2222211 11223456788
Q ss_pred EEEEEECCC
Q 001455 1058 IVLCGTETG 1066 (1074)
Q Consensus 1058 ~LaSGs~DG 1066 (1074)
+++.||.+.
T Consensus 324 iyv~GG~~~ 332 (346)
T TIGR03547 324 VLLIGGENS 332 (346)
T ss_pred EEEEeccCC
Confidence 888888764
No 498
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.64 E-value=1.1e+02 Score=39.26 Aligned_cols=135 Identities=16% Similarity=0.194 Sum_probs=93.5
Q ss_pred cchhHHHHHHhccccccCcccccccCchhhHHHHHHHHh---hccc------cccchhh----hh-hhc-chhhHhHHHH
Q 001455 378 ELLPTLVEVICTSKLYKGKLESVRLTPPAASLMIIEVLV---TAFD------YATNNMH----LA-AIN-SPRVLCGLLD 442 (1074)
Q Consensus 378 ~~~~~l~~v~~~~~~~~~~~~~~~~~p~~aa~~~l~~ll---~~~d------~~~~~~~----~~-~~~-s~~~l~~l~~ 442 (1074)
.=++.+++||++.... +++--|.||.++ +..| -++.+.. .+ ++. .++.|..|+.
T Consensus 61 ~Gmk~li~vL~~D~~D-----------~E~ik~~LdTl~il~~~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~ 129 (970)
T KOG0946|consen 61 QGMKPLIQVLQRDYMD-----------PEIIKYALDTLLILTSHDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQ 129 (970)
T ss_pred cccHHHHHHHhhccCC-----------HHHHHHHHHHHHHHHhcCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHH
Confidence 4567789999875432 233334555443 3322 2333333 22 222 7889999999
Q ss_pred HHhcCChHHHHHHHHHHHhhhhccCcchhHHHhhc------CCcchhhhhhcCCchhHHHHHHHHHHHhccCc-------
Q 001455 443 VARHQNLEELISLATILVKCIQFDGQCRKYLSEFT------AVAPLACLLQSGEKRAIMIALEFFHEILRIPR------- 509 (1074)
Q Consensus 443 ~~~~~~~~e~~~~~~il~~C~~~dg~cr~~ia~~~------~~~~~~~ll~~~~~~~~~~a~~~l~ell~l~r------- 509 (1074)
.++.-|..-|..++.+|..=| +||-.=++.+ ..+.++.+|+-.----|-.||-||.||++=|-
T Consensus 130 ~~e~~DF~VR~~aIqLlsall----s~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVA 205 (970)
T KOG0946|consen 130 SLEEFDFHVRLYAIQLLSALL----SCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELVKDNSSIQKLVA 205 (970)
T ss_pred HHHhhchhhhhHHHHHHHHHH----hcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCchHHHHHH
Confidence 999999999999988877554 4665444432 35678899998888889999999999999886
Q ss_pred --hhhHHHHHHhhccCchhH
Q 001455 510 --SSAIDLLQRIHKEGNINI 527 (1074)
Q Consensus 510 --~~~~~~l~~~~~~~~~~~ 527 (1074)
-....++.+|.+||+..-
T Consensus 206 FENaFerLfsIIeeEGg~dG 225 (970)
T KOG0946|consen 206 FENAFERLFSIIEEEGGLDG 225 (970)
T ss_pred HHHHHHHHHHHHHhcCCCCC
Confidence 225678999999996654
No 499
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.48 E-value=3.2e+02 Score=36.75 Aligned_cols=220 Identities=8% Similarity=-0.061 Sum_probs=97.2
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCeEEEEEccCCceEEEEEeccCCCe----E--EEccCCCeEEEEecCCeEEEEeCCCce
Q 001455 837 KAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATKEPI----R--KLDTYGKTIFASTQGHRMKVIDSSRTL 910 (1074)
Q Consensus 837 ~~VtsLafSpdg~~LaSGS~DGtIrIWDl~tg~~~~~~~~~h~~~V----~--s~s~dg~~L~sgS~DgtI~VWDl~~~l 910 (1074)
.....++|+|....++.|+.+|.|+++-...-+. ...+.... . .+............+..+.+|......
T Consensus 36 ~~~~~~afD~~q~llai~t~tg~i~~yg~~~ve~----~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~ 111 (993)
T KOG1983|consen 36 STPSALAFDPTQGLLAIGTRTGAIKIYGQPGVEF----VGLHPKQNQINVTRIELLVGISRNLVLSDDDSLHLWSIKIKT 111 (993)
T ss_pred CCCcceeeccccceEEEEEecccEEEecccceEE----Eeccccccchhhhheeeeecccccceeecccceeeecccccc
Confidence 4556789999999999999999999987543221 11121111 1 112222233344445555556543211
Q ss_pred eeeecCCCeEEEEEeCCE--EEEEECCCcEEEEEccCCceeeeccccccccCCCCCeEEEEEcCCceEEEEEecCCCeEE
Q 001455 911 KDIYRSKGIKSMSVVQGK--IYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIK 988 (1074)
Q Consensus 911 ~~l~~~~~V~sLa~sdgk--LlaGs~DgsI~IwDl~tg~~~~i~~~~r~~~~h~~~I~sL~~spd~i~las~S~dDgtI~ 988 (1074)
..+ ....+.+..- ++. .+.| ..+.+++||..-........ ..+......+.. ...+. +...+.+.+-.-.
T Consensus 112 ~~~-~~~~~~~~~~-~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~s~~--~~~~~~~~~~~~~ 183 (993)
T KOG1983|consen 112 GVF-LKQEITSFVT-DPPPDWLIG-ENGLVKVSDVLRHQLSDLKY--AGTESSNFVPYE-SLSPT--LSIEGLVIDLDTV 183 (993)
T ss_pred eee-cCCcceeccC-CCCcchhcc-cCceeeEeeechhhhcccee--ccccccccceee-eeccc--eeeeccccccccc
Confidence 111 1111222221 111 2335 78888888876532211100 000000000000 00000 0000000011111
Q ss_pred EEECCCCCeEEEccCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCeEEEEEcCCEEEEEECCCcE
Q 001455 989 EWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAGSKITSLLTANDIVLCGTETGLI 1068 (1074)
Q Consensus 989 IWDl~t~~~i~~l~gH~~~VtsLafSPDG~~LaSGS~DGtIrIWDl~tg~~l~tL~~hs~VtsLa~dg~~LaSGs~DG~I 1068 (1074)
.|...... ..+.-+...+.+..+........ +..-+.+-+|+.........+...+.-. ..++..++++..||.+
T Consensus 184 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~h~Dgs~ 258 (993)
T KOG1983|consen 184 LISLPDAY--LGLSLIEYESLQVLYYSPTKILI-GFNRGLVVIKDRASKYVQSAYLPNGQLE--SRDGSHFVSYHTDGSY 258 (993)
T ss_pred eeeccccc--ccccccccccceeeeecCCCcce-eeeeeeeeehhcccccchhhcccccccC--ccCCceEEEEEecCCE
Confidence 11111111 11222344455555443333333 2335667777655444333333222111 5668899999999999
Q ss_pred EEEec
Q 001455 1069 KGWIP 1073 (1074)
Q Consensus 1069 rIWdi 1073 (1074)
..||.
T Consensus 259 ~fWd~ 263 (993)
T KOG1983|consen 259 AFWDV 263 (993)
T ss_pred Eeeec
Confidence 99985
No 500
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=45.70 E-value=1.4e+02 Score=36.00 Aligned_cols=84 Identities=12% Similarity=0.136 Sum_probs=58.0
Q ss_pred CCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEccCCCCC----eEEEEEecC--------------CCEE-EE
Q 001455 962 SKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTT----IQAMAVVED--------------FIYL-NY 1022 (1074)
Q Consensus 962 ~~~I~sL~~spd~i~las~S~dDgtI~IWDl~t~~~i~~l~gH~~~----VtsLafSPD--------------G~~L-aS 1022 (1074)
...+.++..+|++.+.+... .-|.|.++|+.++..++..+|-.+. +....-... ..+| +-
T Consensus 307 ~R~~~~i~~sP~~~laA~tD-slGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIy 385 (415)
T PF14655_consen 307 KREGESICLSPSGRLAAVTD-SLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIY 385 (415)
T ss_pred CceEEEEEECCCCCEEEEEc-CCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEE
Confidence 45678899999988877753 5589999999999888877765442 111110011 1123 33
Q ss_pred EECCCcEEEEECCCCcEEEEEeCC
Q 001455 1023 NSSASSLQIWLRGTQQKVGRISAG 1046 (1074)
Q Consensus 1023 GS~DGtIrIWDl~tg~~l~tL~~h 1046 (1074)
+-.-|.|.||.+++|..+..+...
T Consensus 386 aprRg~lEvW~~~~g~Rv~a~~v~ 409 (415)
T PF14655_consen 386 APRRGILEVWSMRQGPRVAAFNVG 409 (415)
T ss_pred eccCCeEEEEecCCCCEEEEEEeC
Confidence 556799999999999999888753
Done!