Query 001456
Match_columns 1074
No_of_seqs 577 out of 4380
Neff 6.6
Searched_HMMs 29240
Date Tue Mar 26 17:26:19 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001456.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_755-759//hhsearch_pdb/001456hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b9d_A Serine/threonine-protei 1.0 1 1 383.4 21.3 224 802-1071 20-243 (350)
2 4fie_A Serine/threonine-protei 1.0 1 1 375.7 23.8 219 802-1071 147-365 (423)
3 4fih_A Serine/threonine-protei 1.0 1 1 373.9 22.8 219 802-1071 70-288 (346)
4 4g3f_A NF-kappa-beta-inducing 1.0 1 1 372.7 18.1 219 803-1070 55-273 (336)
5 4aw0_A HPDK1, 3-phosphoinositi 1.0 1 1 371.4 21.6 223 804-1071 30-252 (311)
6 3ubd_A Ribosomal protein S6 ki 1.0 1 1 367.9 13.4 217 805-1071 23-244 (304)
7 3v5w_A G-protein coupled recep 1.0 1 1 362.7 19.9 222 802-1068 185-409 (689)
8 3fpq_A Serine/threonine-protei 1.0 1 1 360.1 22.7 218 806-1070 25-247 (290)
9 4asz_A BDNF/NT-3 growth factor 1.0 1 1 359.4 22.2 227 802-1071 9-249 (299)
10 3omv_A RAF proto-oncogene seri 1.0 1 1 358.9 23.2 217 802-1064 32-248 (307)
No 1
>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*
Probab=1.00 E-value=1 Score=383.45 Aligned_cols=224 Identities=22% Similarity=0.281 Sum_probs=187.6
Q ss_pred CCCCCCCEEEEEEEEECCEEEEEEEECCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECC
Q ss_conf 98899943870663109649999999992089999970468999689876556299999999715999800476479758
Q 001456 802 PGSFPSLSSCDEAGKSVSSSLFRCKFGSADAAAKVRTLKVCGSSADEIRNFEYSCLGEVRMLGALRHSCIVEMYGHKISS 881 (1074)
Q Consensus 802 ~~~~~~y~i~~~LG~G~fG~Vyka~~~~~~vaVKvk~l~~~~~~~~~~~~~~~~~lrEi~iL~~L~HpNIV~l~g~~~~~ 881 (1074)
..+.++|++.++||+|+||+||+|++..++..|++|.+........+.+ .+.+|+.+|++|+|||||++++++...
T Consensus 20 f~sme~Y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~----~~~~E~~il~~l~HpnIV~~~~~~~~~ 95 (350)
T 4b9d_A 20 FQSMEKYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKERE----ESRREVAVLANMKHPNIVQYRESFEEN 95 (350)
T ss_dssp CSCCCCEEEEEEC------CEEEEEETTTCCEEEEEEEECTTSCHHHHH----HHHHHHHHHHHCCCTTBCCEEEEEEET
T ss_pred CCCCCCEEEEEEEECCCCEEEEEEEECCCCCEEEEEEEEHHHCCHHHHH----HHHHHHHHHHHCCCCCCCCEEEEEEEC
T ss_conf 7851255884797027793999999889998999999865878979999----999999999877998989199999989
Q ss_pred CCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEE
Q ss_conf 98789999985456411999913599999999999730499878999999999999999999995992214899998678
Q 001456 882 KWLPSADGNPEHHLLQSAIFMEYVKGGSVKNYIEKLSETGEKHVSVKLALFIAQDVAAALVELHSKHIMHRDIKSENILI 961 (1074)
Q Consensus 882 ~~l~~~~~~~~~~~~~~~IVmEy~~gGSL~~~L~~~~~~~~~~l~~~~~~~i~~qIa~GL~yLHs~gIIHRDLKp~NILI 961 (1074)
+.+ |||||||+||+|.+++.. .+...+++..++.|+.|++.||.|||+++||||||||+|||+
T Consensus 96 ~~~--------------yiVmEy~~gg~L~~~i~~---~~~~~~~e~~~~~~~~qi~~aL~ylH~~~IiHRDlKp~NILl 158 (350)
T 4b9d_A 96 GSL--------------YIVMDYCEGGDLFKRINA---QKGVLFQEDQILDWFVQICLALKHVHDRKILHRDIKSQNIFL 158 (350)
T ss_dssp TEE--------------EEEEECCTTCBHHHHHHH---TTTCCCCHHHHHHHHHHHHHHHHHHHHTTCEETTCCGGGEEE
T ss_pred CEE--------------EEEEECCCCCCHHHHHHH---CCCCCCCHHHHHHHHHHHHHHHHHHHHCCEEECCCCHHHEEE
T ss_conf 999--------------999948899839999997---389999789999999999999999998991513597899798
Q ss_pred ECCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 05887789999399920234410356565323346788999754479742405544025577778853342011143999
Q 001456 962 DLERKKADGKPVVKLCDFDRAVPLRSFLHTCCIAHRGIPAPDVCVGTPRWMAPEVLRAMHKPNLYGLVSSSLFCQFKVES 1041 (1074)
Q Consensus 962 d~~~~~~~~~~~VKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~vGT~~YmAPEvL~~~~~~~~y~~ksDIWS~G~SLG~ 1041 (1074)
+.++. +||+|||+|+.+...... ...++||+.|||||++.+ ..|+.++||| |+||
T Consensus 159 ~~~g~-------vKl~DFGla~~~~~~~~~----------~~~~~GT~~YmAPE~l~~----~~y~~~~Diw----SlGv 213 (350)
T 4b9d_A 159 TKDGT-------VQLGDFGIARVLNSTVEL----------ARACIGTPYYLSPEICEN----KPYNNKSDIW----ALGC 213 (350)
T ss_dssp CTTCC-------EEECSTTEESCCCHHHHH----------HHHHHSCCTTCCHHHHTT----CCCCHHHHHH----HHHH
T ss_pred CCCCC-------EEECCCCCCEEECCCCCC----------CCCCCCCCCCCCHHHHCC----CCCCCHHHHH----HHHH
T ss_conf 78999-------897646521440688541----------014578836039999879----9989599999----9999
Q ss_pred HHHHHHHCCCCCCCCCHHHHHHHHHCCCCC
Q ss_conf 999998199998875799999999619999
Q 001456 1042 KLIICLVIFPQFRYLKLFYHFFFLLKGAPS 1071 (1074)
Q Consensus 1042 iL~el~tG~~Pf~~~~~~~~i~~il~g~P~ 1071 (1074)
++|+|++|++||...+..+++.++.++.++
T Consensus 214 ilyemltG~~PF~~~~~~~~~~~i~~~~~~ 243 (350)
T 4b9d_A 214 VLYELCTLKHAFEAGSMKNLVLKIISGSFP 243 (350)
T ss_dssp HHHHHHHSSCSCCCSSHHHHHHHHHHTCCC
T ss_pred HHHHHHHCCCCCCCCCHHHHHHHHHCCCCC
T ss_conf 999999787998996999999999808999
No 2
>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}
Probab=1.00 E-value=1 Score=375.66 Aligned_cols=219 Identities=22% Similarity=0.328 Sum_probs=182.0
Q ss_pred CCCCCCCEEEEEEEEECCEEEEEEEECCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECC
Q ss_conf 98899943870663109649999999992089999970468999689876556299999999715999800476479758
Q 001456 802 PGSFPSLSSCDEAGKSVSSSLFRCKFGSADAAAKVRTLKVCGSSADEIRNFEYSCLGEVRMLGALRHSCIVEMYGHKISS 881 (1074)
Q Consensus 802 ~~~~~~y~i~~~LG~G~fG~Vyka~~~~~~vaVKvk~l~~~~~~~~~~~~~~~~~lrEi~iL~~L~HpNIV~l~g~~~~~ 881 (1074)
+.+...|++.++||+|+||.||+|++..++..|++|.+....... .+.+.+|+.+|++++|||||++++++...
T Consensus 147 ~dp~~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~------~~~~~~Ei~il~~l~HpnIV~l~~~~~~~ 220 (423)
T 4fie_A 147 GDPRSYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQR------RELLFNEVVIMRDYQHENVVEMYNSYLVG 220 (423)
T ss_dssp SCGGGTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESTTCSS------GGGHHHHHHHHHHCCCTTBCCEEEEEEET
T ss_pred CCHHHHCEEEEEECCCCCCEEEEEEECCCCCEEEEEEEECCCHHH------HHHHHHHHHHHHHCCCCCCCCEEEEEEEC
T ss_conf 982684386169624818489999999999899999986255468------99999999999857998987168999989
Q ss_pred CCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEE
Q ss_conf 98789999985456411999913599999999999730499878999999999999999999995992214899998678
Q 001456 882 KWLPSADGNPEHHLLQSAIFMEYVKGGSVKNYIEKLSETGEKHVSVKLALFIAQDVAAALVELHSKHIMHRDIKSENILI 961 (1074)
Q Consensus 882 ~~l~~~~~~~~~~~~~~~IVmEy~~gGSL~~~L~~~~~~~~~~l~~~~~~~i~~qIa~GL~yLHs~gIIHRDLKp~NILI 961 (1074)
+.+ |||||||+||+|.+++.. ..+++..+..|+.|++.||.|||+++||||||||+|||+
T Consensus 221 ~~~--------------~iVmEy~~gG~L~~~i~~------~~l~e~~~~~~~~qil~aL~ylH~~~IiHRDiKp~NILl 280 (423)
T 4fie_A 221 DEL--------------WVVMEFLEGGALTDIVTH------TRMNEEQIAAVCLAVLQALSVLHAQGVIHRDIKSDSILL 280 (423)
T ss_dssp TEE--------------EEEEECCTTEEHHHHHHH------SCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSTTTEEE
T ss_pred CEE--------------EEEEECCCCCCHHHHHHC------CCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCHHHEEE
T ss_conf 999--------------999969899828988761------698999999999999999999998890446578777898
Q ss_pred ECCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 05887789999399920234410356565323346788999754479742405544025577778853342011143999
Q 001456 962 DLERKKADGKPVVKLCDFDRAVPLRSFLHTCCIAHRGIPAPDVCVGTPRWMAPEVLRAMHKPNLYGLVSSSLFCQFKVES 1041 (1074)
Q Consensus 962 d~~~~~~~~~~~VKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~vGT~~YmAPEvL~~~~~~~~y~~ksDIWS~G~SLG~ 1041 (1074)
+.++. +||+|||+|+.+..... ...+.+||+.|||||++.+ ..|+.++||| |+||
T Consensus 281 ~~~g~-------vKl~DFGla~~~~~~~~----------~~~~~~GTp~YmAPEvl~~----~~y~~~~DiW----SlGv 335 (423)
T 4fie_A 281 THDGR-------VKLSDFGFCAQVSKEVP----------RRKSLVGTPYWMAPELISR----LPYGPEVDIW----SLGI 335 (423)
T ss_dssp CTTCC-------EEECCCTTCEECCSSCC----------CBCCCEECTTTCCHHHHTT----CCBCTHHHHH----HHHH
T ss_pred CCCCC-------EEEECCCCCEECCCCCC----------CCCCCCCCCCCCCHHHHCC----CCCCCHHHHH----HHHH
T ss_conf 58999-------89803726547778876----------4346664747279999779----9999689999----9999
Q ss_pred HHHHHHHCCCCCCCCCHHHHHHHHHCCCCC
Q ss_conf 999998199998875799999999619999
Q 001456 1042 KLIICLVIFPQFRYLKLFYHFFFLLKGAPS 1071 (1074)
Q Consensus 1042 iL~el~tG~~Pf~~~~~~~~i~~il~g~P~ 1071 (1074)
++|+|++|++||........+..+..+.|+
T Consensus 336 ilyeml~G~~PF~~~~~~~~~~~i~~~~~~ 365 (423)
T 4fie_A 336 MVIEMVDGEPPYFNEPPLKAMKMIRDNLPP 365 (423)
T ss_dssp HHHHHHHSSCTTTTSCHHHHHHHHHHSCCC
T ss_pred HHHHHHHCCCCCCCCCHHHHHHHHHCCCCC
T ss_conf 999999787998986999999999727998
No 3
>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*
Probab=1.00 E-value=1 Score=373.86 Aligned_cols=219 Identities=22% Similarity=0.328 Sum_probs=180.7
Q ss_pred CCCCCCCEEEEEEEEECCEEEEEEEECCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECC
Q ss_conf 98899943870663109649999999992089999970468999689876556299999999715999800476479758
Q 001456 802 PGSFPSLSSCDEAGKSVSSSLFRCKFGSADAAAKVRTLKVCGSSADEIRNFEYSCLGEVRMLGALRHSCIVEMYGHKISS 881 (1074)
Q Consensus 802 ~~~~~~y~i~~~LG~G~fG~Vyka~~~~~~vaVKvk~l~~~~~~~~~~~~~~~~~lrEi~iL~~L~HpNIV~l~g~~~~~ 881 (1074)
+.+...|++.++||+|+||+||+|++..++..|++|.++...... .+.+.+|+.+|++++|||||++++++...
T Consensus 70 ~dp~~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~------~~~~~~Ei~il~~l~HpnIV~l~~~~~~~ 143 (346)
T 4fih_A 70 GDPRSYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQR------RELLFNEVVIMRDYQHENVVEMYNSYLVG 143 (346)
T ss_dssp SCGGGTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCSS------GGGGHHHHHHHHHCCCTTBCCEEEEEEET
T ss_pred CCHHHHCEEEEEEECCCCEEEEEEEECCCCCEEEEEEEECCCHHH------HHHHHHHHHHHHHCCCCCCCCEEEEEEEC
T ss_conf 981575387079602728299999998999899999985276568------99999999999867998999199999989
Q ss_pred CCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEE
Q ss_conf 98789999985456411999913599999999999730499878999999999999999999995992214899998678
Q 001456 882 KWLPSADGNPEHHLLQSAIFMEYVKGGSVKNYIEKLSETGEKHVSVKLALFIAQDVAAALVELHSKHIMHRDIKSENILI 961 (1074)
Q Consensus 882 ~~l~~~~~~~~~~~~~~~IVmEy~~gGSL~~~L~~~~~~~~~~l~~~~~~~i~~qIa~GL~yLHs~gIIHRDLKp~NILI 961 (1074)
+.+ |||||||+||+|.+++.+ ..+++..+..|+.|++.||.|||+++||||||||+|||+
T Consensus 144 ~~~--------------~ivmEy~~gg~L~~~l~~------~~l~e~~~~~~~~qi~~aL~ylH~~~IiHRDlKp~NILl 203 (346)
T 4fih_A 144 DEL--------------WVVMEFLEGGALTDIVTH------TRMNEEQIAAVCLAVLQALSVLHAQGVIHRDIKSDSILL 203 (346)
T ss_dssp TEE--------------EEEECCCTTEEHHHHHHH------SCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEE
T ss_pred CEE--------------EEEEECCCCCCHHHHHHC------CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHEEE
T ss_conf 999--------------999969899808999871------898999999999999999999998883556278899788
Q ss_pred ECCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 05887789999399920234410356565323346788999754479742405544025577778853342011143999
Q 001456 962 DLERKKADGKPVVKLCDFDRAVPLRSFLHTCCIAHRGIPAPDVCVGTPRWMAPEVLRAMHKPNLYGLVSSSLFCQFKVES 1041 (1074)
Q Consensus 962 d~~~~~~~~~~~VKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~vGT~~YmAPEvL~~~~~~~~y~~ksDIWS~G~SLG~ 1041 (1074)
+.++. +||+|||+|+.+..... ...+.+||+.|||||++.+ ..|+.++||| |+||
T Consensus 204 ~~~g~-------vKl~DFGla~~~~~~~~----------~~~~~~GTp~YmAPEvl~~----~~y~~~~DiW----SlGv 258 (346)
T 4fih_A 204 THDGR-------VKLSDFGFCAQVSKEVP----------RRKSLVGTPYWMAPELISR----LPYGPEVDIW----SLGI 258 (346)
T ss_dssp CTTCC-------EEECCCTTCEECCSSSC----------CBCCCCSCGGGCCHHHHTT----CCBCTHHHHH----HHHH
T ss_pred CCCCC-------EEEECCCCCEECCCCCC----------CCCCCCCCCCCCCHHHHCC----CCCCCHHHHH----HHHH
T ss_conf 79998-------89902757536678877----------5346562758279999779----9999689999----9999
Q ss_pred HHHHHHHCCCCCCCCCHHHHHHHHHCCCCC
Q ss_conf 999998199998875799999999619999
Q 001456 1042 KLIICLVIFPQFRYLKLFYHFFFLLKGAPS 1071 (1074)
Q Consensus 1042 iL~el~tG~~Pf~~~~~~~~i~~il~g~P~ 1071 (1074)
++|+|++|++||........+..+..+.|+
T Consensus 259 ilyeml~G~~PF~~~~~~~~~~~i~~~~~~ 288 (346)
T 4fih_A 259 MVIEMVDGEPPYFNEPPLKAMKMIRDNLPP 288 (346)
T ss_dssp HHHHHHHSSCTTTTSCHHHHHHHHHHSSCC
T ss_pred HHHHHHHCCCCCCCCCHHHHHHHHHCCCCC
T ss_conf 999999787998985999999999717999
No 4
>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*
Probab=1.00 E-value=1 Score=372.72 Aligned_cols=219 Identities=21% Similarity=0.267 Sum_probs=176.9
Q ss_pred CCCCCCEEEEEEEEECCEEEEEEEECCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCC
Q ss_conf 88999438706631096499999999920899999704689996898765562999999997159998004764797589
Q 001456 803 GSFPSLSSCDEAGKSVSSSLFRCKFGSADAAAKVRTLKVCGSSADEIRNFEYSCLGEVRMLGALRHSCIVEMYGHKISSK 882 (1074)
Q Consensus 803 ~~~~~y~i~~~LG~G~fG~Vyka~~~~~~vaVKvk~l~~~~~~~~~~~~~~~~~lrEi~iL~~L~HpNIV~l~g~~~~~~ 882 (1074)
..+..|++.++||+|+||.||+|++..++..|++|.++.... ..+|+.+|++++|||||++++++...+
T Consensus 55 ~~~~~~~~~~~lG~G~fG~Vy~a~~~~~g~~vAiK~i~~~~~-----------~~~E~~il~~l~HpnIV~l~~~~~~~~ 123 (336)
T 4g3f_A 55 EEVHWMTHQPRVGRGSFGEVHRMKDKQTGFQCAVKKVRLEVF-----------RVEELVACAGLSSPRIVPLYGAVREGP 123 (336)
T ss_dssp BTTTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTC-----------CTHHHHTTTTCCCTTBCCEEEEEEETT
T ss_pred CCHHHEEECCEECCCCCEEEEEEEECCCCCEEEEEEECHHHH-----------HHHHHHHHHHCCCCCCCCEEEEEEECC
T ss_conf 253351768685138780999999889998999999788886-----------999999998579989993999999899
Q ss_pred CCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEE
Q ss_conf 87899999854564119999135999999999997304998789999999999999999999959922148999986780
Q 001456 883 WLPSADGNPEHHLLQSAIFMEYVKGGSVKNYIEKLSETGEKHVSVKLALFIAQDVAAALVELHSKHIMHRDIKSENILID 962 (1074)
Q Consensus 883 ~l~~~~~~~~~~~~~~~IVmEy~~gGSL~~~L~~~~~~~~~~l~~~~~~~i~~qIa~GL~yLHs~gIIHRDLKp~NILId 962 (1074)
.+ |||||||+||+|.+++++ .+.+++..+..|+.|++.||.|||+++||||||||+|||++
T Consensus 124 ~~--------------~ivmEy~~gg~L~~~l~~-----~~~l~e~~~~~~~~qi~~aL~ylH~~~IiHRDlKp~NILl~ 184 (336)
T 4g3f_A 124 WV--------------NIFMELLEGGSLGQLIKQ-----MGCLPEDRALYYLGQALEGLEYLHTRRILHGDVKADNVLLS 184 (336)
T ss_dssp EE--------------EEEECCCTTCBHHHHHHH-----HSSCCHHHHHHHHHHHHHHHHHHHTTTEECSCCCGGGEEEC
T ss_pred EE--------------EEEEECCCCCCHHHHHHH-----CCCCCHHHHHHHHHHHHHHHHHHHHCCCEECCCCHHHEEEE
T ss_conf 99--------------999966599869999987-----69999999999999999999999988904261677887995
Q ss_pred CCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 58877899993999202344103565653233467889997544797424055440255777788533420111439999
Q 001456 963 LERKKADGKPVVKLCDFDRAVPLRSFLHTCCIAHRGIPAPDVCVGTPRWMAPEVLRAMHKPNLYGLVSSSLFCQFKVESK 1042 (1074)
Q Consensus 963 ~~~~~~~~~~~VKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~vGT~~YmAPEvL~~~~~~~~y~~ksDIWS~G~SLG~i 1042 (1074)
.++. .+||+|||+|+.+....... .......++||+.|||||++.+ ..|+.++||| |+||+
T Consensus 185 ~~g~------~vKl~DFGla~~~~~~~~~~-----~~~~~~~~~GT~~YmAPE~~~~----~~y~~~~Diw----SlGvi 245 (336)
T 4g3f_A 185 SDGS------RAALCDFGHALCLQPDGLGK-----SLLTGDYIPGTETHMAPEVVMG----KPCDAKVDIW----SSCCM 245 (336)
T ss_dssp TTSC------CEEECCCTTCEEC-----------------CCCCCCGGGCCHHHHTT----CCCCTHHHHH----HHHHH
T ss_pred CCCC------EEEEEECCCCEECCCCCCCC-----CEECCCCCCCCCCCCCHHHHCC----CCCCCHHHHH----HHHHH
T ss_conf 8999------79996278776856787654-----0221785455802008999889----9989089999----99999
Q ss_pred HHHHHHCCCCCCCCCHHHHHHHHHCCCC
Q ss_conf 9999819999887579999999961999
Q 001456 1043 LIICLVIFPQFRYLKLFYHFFFLLKGAP 1070 (1074)
Q Consensus 1043 L~el~tG~~Pf~~~~~~~~i~~il~g~P 1070 (1074)
+|+|++|.+||.......++.++.++.|
T Consensus 246 lyemltG~~Pf~~~~~~~~~~~i~~~~~ 273 (336)
T 4g3f_A 246 MLHMLNGCHPWTQYFRGPLCLKIASEPP 273 (336)
T ss_dssp HHHHHHSSCSSTTTCCSCCHHHHHHSCC
T ss_pred HHHHHHCCCCCCCCCHHHHHHHHHCCCC
T ss_conf 9999978699899899999999980899
No 5
>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...
Probab=1.00 E-value=1 Score=371.39 Aligned_cols=223 Identities=21% Similarity=0.228 Sum_probs=184.0
Q ss_pred CCCCCEEEEEEEEECCEEEEEEEECCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCC
Q ss_conf 89994387066310964999999999208999997046899968987655629999999971599980047647975898
Q 001456 804 SFPSLSSCDEAGKSVSSSLFRCKFGSADAAAKVRTLKVCGSSADEIRNFEYSCLGEVRMLGALRHSCIVEMYGHKISSKW 883 (1074)
Q Consensus 804 ~~~~y~i~~~LG~G~fG~Vyka~~~~~~vaVKvk~l~~~~~~~~~~~~~~~~~lrEi~iL~~L~HpNIV~l~g~~~~~~~ 883 (1074)
..++|++.+.||+|+||+||+|++..++..|++|.+..... ..+.....+.+|+.+|++++|||||++++++.+.+.
T Consensus 30 ~~~dy~i~~~lG~G~fg~V~~a~~~~~~~~~AiK~i~k~~~---~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~ 106 (311)
T 4aw0_A 30 RPEDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHI---IKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDEK 106 (311)
T ss_dssp CGGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHH---HHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSE
T ss_pred CCCCCEEEEEEECCCCEEEEEEEECCCCCEEEEEEEEHHHC---CCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCE
T ss_conf 85236898898316484999999999998999999888887---797899999999999986799898919999973898
Q ss_pred CCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEC
Q ss_conf 78999998545641199991359999999999973049987899999999999999999999599221489999867805
Q 001456 884 LPSADGNPEHHLLQSAIFMEYVKGGSVKNYIEKLSETGEKHVSVKLALFIAQDVAAALVELHSKHIMHRDIKSENILIDL 963 (1074)
Q Consensus 884 l~~~~~~~~~~~~~~~IVmEy~~gGSL~~~L~~~~~~~~~~l~~~~~~~i~~qIa~GL~yLHs~gIIHRDLKp~NILId~ 963 (1074)
+ ||||||++||+|.+++.+ .+.+++..+..|+.|++.||.|||+++||||||||+|||++.
T Consensus 107 ~--------------yivmEy~~gG~L~~~i~~-----~~~l~e~~~~~~~~qi~~al~ylH~~~IiHRDlKPeNILl~~ 167 (311)
T 4aw0_A 107 L--------------YFGLSYAKNGELLKYIRK-----IGSFDETCTRFYTAEIVSALEYLHGKGIIHRDLKPENILLNE 167 (311)
T ss_dssp E--------------EEEECCCTTEEHHHHHHH-----HSSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECT
T ss_pred E--------------EEEEECCCCCCHHHHHHH-----CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHEEECC
T ss_conf 9--------------999964899899999987-----499999999999999999999999887826878789969858
Q ss_pred CCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 88778999939992023441035656532334678899975447974240554402557777885334201114399999
Q 001456 964 ERKKADGKPVVKLCDFDRAVPLRSFLHTCCIAHRGIPAPDVCVGTPRWMAPEVLRAMHKPNLYGLVSSSLFCQFKVESKL 1043 (1074)
Q Consensus 964 ~~~~~~~~~~VKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~vGT~~YmAPEvL~~~~~~~~y~~ksDIWS~G~SLG~iL 1043 (1074)
++. +||+|||+|+.+...... ....+++||+.|||||++.+ ..|+.++||| |+||++
T Consensus 168 ~g~-------vKl~DFGla~~~~~~~~~--------~~~~~~~GTp~YmAPEvl~~----~~y~~~~DiW----SlGvil 224 (311)
T 4aw0_A 168 DMH-------IQITDFGTAKVLSPESKQ--------ARANSFVGTAQYVSPELLTE----KSACKSSDLW----ALGCII 224 (311)
T ss_dssp TSC-------EEECCCTTCEECCTTTTC--------CCBCCCCSCGGGCCHHHHHH----SCBCHHHHHH----HHHHHH
T ss_pred CCC-------EEEEECCCCEECCCCCCC--------CCCCCCCCCCCCCCHHHHCC----CCCCCHHHHH----HHHHHH
T ss_conf 988-------899876875025778776--------54367556803079989768----9999689899----899999
Q ss_pred HHHHHCCCCCCCCCHHHHHHHHHCCCCC
Q ss_conf 9998199998875799999999619999
Q 001456 1044 IICLVIFPQFRYLKLFYHFFFLLKGAPS 1071 (1074)
Q Consensus 1044 ~el~tG~~Pf~~~~~~~~i~~il~g~P~ 1071 (1074)
|+|++|++||...+..+++.++.++.+.
T Consensus 225 yeml~G~~PF~~~~~~~~~~~i~~~~~~ 252 (311)
T 4aw0_A 225 YQLVAGLPPFRAGNEGLIFAKIIKLEYD 252 (311)
T ss_dssp HHHHHSSCSSCCSSHHHHHHHHHHTCCC
T ss_pred HHHHHCCCCCCCCCHHHHHHHHHCCCCC
T ss_conf 9997498998997999999999719999
No 6
>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*
Probab=1.00 E-value=1 Score=367.94 Aligned_cols=217 Identities=22% Similarity=0.190 Sum_probs=179.5
Q ss_pred CCCCEEEEEEEEECCEEEEEEEEC-----CCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEE
Q ss_conf 999438706631096499999999-----920899999704689996898765562999999997159998004764797
Q 001456 805 FPSLSSCDEAGKSVSSSLFRCKFG-----SADAAAKVRTLKVCGSSADEIRNFEYSCLGEVRMLGALRHSCIVEMYGHKI 879 (1074)
Q Consensus 805 ~~~y~i~~~LG~G~fG~Vyka~~~-----~~~vaVKvk~l~~~~~~~~~~~~~~~~~lrEi~iL~~L~HpNIV~l~g~~~ 879 (1074)
.++|++.+.||+|+||+||+|++. +..+|+|+....... ... ...+.+|+.+|++++|||||++++++.
T Consensus 23 p~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~~~--~~~----~~~~~~E~~il~~l~HpnIv~l~~~~~ 96 (304)
T 3ubd_A 23 PSQFELLKVLGQGSFGKVFLVKKISGSDARQLYAMKVLKKATLK--VRD----RVRTKMERDILVEVNHPFIVKLHYAFQ 96 (304)
T ss_dssp GGGEEEEEEEECGGGCEEEEEEECSSTTTTCEEEEEEEESEEEE--EEE----CC------CCCCCCCCTTEECEEEEEE
T ss_pred CCCCEEEEEEECCCCEEEEEEEECCCCCCCEEEEEEEEEHHHCC--HHH----HHHHHHHHHHHHHCCCCCCCEEEEEEE
T ss_conf 55658988972188839999998558878979999998157768--478----999999999998779979990999999
Q ss_pred CCCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCE
Q ss_conf 58987899999854564119999135999999999997304998789999999999999999999959922148999986
Q 001456 880 SSKWLPSADGNPEHHLLQSAIFMEYVKGGSVKNYIEKLSETGEKHVSVKLALFIAQDVAAALVELHSKHIMHRDIKSENI 959 (1074)
Q Consensus 880 ~~~~l~~~~~~~~~~~~~~~IVmEy~~gGSL~~~L~~~~~~~~~~l~~~~~~~i~~qIa~GL~yLHs~gIIHRDLKp~NI 959 (1074)
..+.+ |||||||+||+|.+++.+ ...+++..+..++.|++.||.|||+++||||||||+||
T Consensus 97 ~~~~~--------------~ivmEy~~gg~L~~~l~~-----~~~l~e~~~~~~~~qi~~aL~ylH~~~IiHRDlKp~NI 157 (304)
T 3ubd_A 97 TEGKL--------------YLILDFLRGGDLFTRLSK-----EVMFTEEDVKFYLAELALALDHLHSLGIIYRDLKPENI 157 (304)
T ss_dssp ETTEE--------------EEEECCCTTCEEHHHHHH-----HCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSSCCGGGE
T ss_pred ECCEE--------------EEEEECCCCCCHHHHHHH-----CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHE
T ss_conf 89999--------------999975799888999975-----59999999999999999999999977995888878995
Q ss_pred EEECCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 78058877899993999202344103565653233467889997544797424055440255777788533420111439
Q 001456 960 LIDLERKKADGKPVVKLCDFDRAVPLRSFLHTCCIAHRGIPAPDVCVGTPRWMAPEVLRAMHKPNLYGLVSSSLFCQFKV 1039 (1074)
Q Consensus 960 LId~~~~~~~~~~~VKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~vGT~~YmAPEvL~~~~~~~~y~~ksDIWS~G~SL 1039 (1074)
|++.++. +||+|||+|+....... ...+.+||+.|||||++.+ ..|+.++||| |+
T Consensus 158 Ll~~~g~-------vKl~DFGla~~~~~~~~----------~~~~~~GT~~YmAPE~~~~----~~y~~~~Diw----Sl 212 (304)
T 3ubd_A 158 LLDEEGH-------IKLTDFGLSKESIDHEK----------KAYSFCGTVEYMAPEVVNR----RGHTQSADWW----SF 212 (304)
T ss_dssp EECTTSC-------EEEESSEEEEC-----C----------CCCSCCCCGGGCCHHHHHT----SCCCTHHHHH----HH
T ss_pred EECCCCC-------EEECCCCCCEECCCCCC----------CCCCCCCCCCCCCHHHHCC----CCCCCCCCCC----CH
T ss_conf 7868998-------87623663433268876----------3045441815079999656----8878777636----11
Q ss_pred HHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCC
Q ss_conf 99999998199998875799999999619999
Q 001456 1040 ESKLIICLVIFPQFRYLKLFYHFFFLLKGAPS 1071 (1074)
Q Consensus 1040 G~iL~el~tG~~Pf~~~~~~~~i~~il~g~P~ 1071 (1074)
||++|+|++|.+||...+..+++.++.++.++
T Consensus 213 GvilyemltG~~PF~~~~~~~~~~~i~~~~~~ 244 (304)
T 3ubd_A 213 GVLMFEMLTGTLPFQGKDRKETMTMILKAKLG 244 (304)
T ss_dssp HHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCC
T ss_conf 99999998598998984999999999718999
No 7
>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A
Probab=1.00 E-value=1 Score=362.68 Aligned_cols=222 Identities=18% Similarity=0.212 Sum_probs=172.8
Q ss_pred CCCCCCCEEEEEEEEECCEEEEEEEECCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECC
Q ss_conf 98899943870663109649999999992089999970468999689876556299999999715999800476479758
Q 001456 802 PGSFPSLSSCDEAGKSVSSSLFRCKFGSADAAAKVRTLKVCGSSADEIRNFEYSCLGEVRMLGALRHSCIVEMYGHKISS 881 (1074)
Q Consensus 802 ~~~~~~y~i~~~LG~G~fG~Vyka~~~~~~vaVKvk~l~~~~~~~~~~~~~~~~~lrEi~iL~~L~HpNIV~l~g~~~~~ 881 (1074)
..++++|++.+.||+|+||.||+|++..++..+++|.++..................++.+++.++|||||++++++.+.
T Consensus 185 ~~slddf~i~k~LG~G~fG~V~la~~~~tg~~~AiK~i~K~~i~~~~~~~~~~~E~~~l~ll~~~~HP~IV~l~~~f~~~ 264 (689)
T 3v5w_A 185 HLTMNDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTP 264 (689)
T ss_dssp CCCGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEECS
T ss_pred CCCHHHEEEEEEEECCCCEEEEEEEECCCCCEEEEEEEEHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEC
T ss_conf 99568928888983164839999999999989999997578825255689999999999999648999871799999989
Q ss_pred CCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEE
Q ss_conf 98789999985456411999913599999999999730499878999999999999999999995992214899998678
Q 001456 882 KWLPSADGNPEHHLLQSAIFMEYVKGGSVKNYIEKLSETGEKHVSVKLALFIAQDVAAALVELHSKHIMHRDIKSENILI 961 (1074)
Q Consensus 882 ~~l~~~~~~~~~~~~~~~IVmEy~~gGSL~~~L~~~~~~~~~~l~~~~~~~i~~qIa~GL~yLHs~gIIHRDLKp~NILI 961 (1074)
+.+ ||||||++||+|.++|.+ .+.+++..+..|+.||+.||.|||+++||||||||+|||+
T Consensus 265 ~~l--------------ylVmEy~~GGdL~~~l~~-----~~~l~E~~a~~y~~qIl~aL~yLH~~gIiHRDLKPeNILl 325 (689)
T 3v5w_A 265 DKL--------------SFILDLMNGGDLHYHLSQ-----HGVFSEADMRFYAAEIILGLEHMHNRFVVYRDLKPANILL 325 (689)
T ss_dssp SEE--------------EEEECCCCSCBHHHHHHH-----HCCCCHHHHHHHHHHHHHHHHHHHTTTEECCCCSGGGEEE
T ss_pred CEE--------------EEEEECCCCCCHHHHHHH-----CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHEEE
T ss_conf 988--------------999946899829999986-----6999999999999999999999997885416886687598
Q ss_pred ECCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 05887789999399920234410356565323346788999754479742405544025577778853342011143999
Q 001456 962 DLERKKADGKPVVKLCDFDRAVPLRSFLHTCCIAHRGIPAPDVCVGTPRWMAPEVLRAMHKPNLYGLVSSSLFCQFKVES 1041 (1074)
Q Consensus 962 d~~~~~~~~~~~VKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~vGT~~YmAPEvL~~~~~~~~y~~ksDIWS~G~SLG~ 1041 (1074)
+.++. +||+|||+|+.+.... ..+.+||+.|||||++.+ +..|+.++|+| |+||
T Consensus 326 d~~G~-------vKL~DFGlA~~~~~~~------------~~t~~GTp~YmAPEvl~~---~~~y~~~vDiW----SLGv 379 (689)
T 3v5w_A 326 DEHGH-------VRISDLGLACDFSKKK------------PHASVGTHGYMAPEVLQK---GVAYDSSADWF----SLGC 379 (689)
T ss_dssp CTTSC-------EEECCCTTCEECSSCC------------CCSCCSCGGGCCHHHHST---TCCCCTHHHHH----HHHH
T ss_pred ECCCC-------EEECCCCEEEECCCCC------------CCCCCCCCCCCCHHHHHC---CCCCCCHHHHH----HHHH
T ss_conf 08998-------8964565566637898------------777657867318899847---99999599999----9999
Q ss_pred HHHHHHHCCCCCCCC---CHHHHHHHHHCC
Q ss_conf 999998199998875---799999999619
Q 001456 1042 KLIICLVIFPQFRYL---KLFYHFFFLLKG 1068 (1074)
Q Consensus 1042 iL~el~tG~~Pf~~~---~~~~~i~~il~g 1068 (1074)
++|+|++|.+||... +...++..+..+
T Consensus 380 ilYEmLtG~~PF~~~~~~~~~~i~~~i~~~ 409 (689)
T 3v5w_A 380 MLFKLLRGHSPFRQHKTKDKHEIDRMTLTM 409 (689)
T ss_dssp HHHHHHHSSCTTCGGGCCCHHHHHHHHHHC
T ss_pred HHHHHHHCCCCCCCCCHHHHHHHHHHHCCC
T ss_conf 999998687999999867799999850579
No 8
>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}
Probab=1.00 E-value=1 Score=360.09 Aligned_cols=218 Identities=21% Similarity=0.243 Sum_probs=173.0
Q ss_pred CCC-EEEEEEEEECCEEEEEEEECCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCC
Q ss_conf 994-3870663109649999999992089999970468999689876556299999999715999800476479758987
Q 001456 806 PSL-SSCDEAGKSVSSSLFRCKFGSADAAAKVRTLKVCGSSADEIRNFEYSCLGEVRMLGALRHSCIVEMYGHKISSKWL 884 (1074)
Q Consensus 806 ~~y-~i~~~LG~G~fG~Vyka~~~~~~vaVKvk~l~~~~~~~~~~~~~~~~~lrEi~iL~~L~HpNIV~l~g~~~~~~~l 884 (1074)
+.| ++.++||+|+||+||+|.+..++..||+|.+..........+ .|.+|+.+|++|+|||||++++++.....
T Consensus 25 gr~~~~~~~iG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~----~~~~E~~il~~l~HpnIV~~~~~~~~~~~- 99 (290)
T 3fpq_A 25 GRFLKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQ----RFKEEAEMLKGLQHPNIVRFYDSWESTVK- 99 (290)
T ss_dssp SSEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHH----HHHHHHHHHHTCCCTTBCCEEEEEEEEET-
T ss_pred CCEEEEEEEEECCCCCEEEEEEECCCCEEEEEEEECHHHCCHHHHH----HHHHHHHHHHHCCCCCCCCEEEEEEECCC-
T ss_conf 8368950697007385999999889990999999832547989999----99999999986799899919889964367-
Q ss_pred CCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC--CCCCCCCCCCEEEE
Q ss_conf 8999998545641199991359999999999973049987899999999999999999999599--22148999986780
Q 001456 885 PSADGNPEHHLLQSAIFMEYVKGGSVKNYIEKLSETGEKHVSVKLALFIAQDVAAALVELHSKH--IMHRDIKSENILID 962 (1074)
Q Consensus 885 ~~~~~~~~~~~~~~~IVmEy~~gGSL~~~L~~~~~~~~~~l~~~~~~~i~~qIa~GL~yLHs~g--IIHRDLKp~NILId 962 (1074)
+ -..+|||||||+||+|.+++.+ ...+++..+..|+.|++.||+|||+++ ||||||||+|||++
T Consensus 100 ----~-----~~~~~lvmEy~~gg~L~~~l~~-----~~~l~~~~~~~~~~qi~~aL~ylH~~~~~IiHRDlKp~NILl~ 165 (290)
T 3fpq_A 100 ----G-----KKCIVLVTELMTSGTLKTYLKR-----FKVMKIKVLRSWCRQILKGLQFLHTRTPPIIHRDLKCDNIFIT 165 (290)
T ss_dssp ----T-----EEEEEEEEECCCSCBHHHHHHH-----HSSCCHHHHHHHHHHHHHHHHHHHTSSSCCCCCCCCGGGEEES
T ss_pred ----C-----CCEEEEEEECCCCCCHHHHHHH-----CCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCHHHEEEE
T ss_conf ----8-----8689999948797899999986-----6999999999999999999999997799887164574266588
Q ss_pred C-CCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 5-887789999399920234410356565323346788999754479742405544025577778853342011143999
Q 001456 963 L-ERKKADGKPVVKLCDFDRAVPLRSFLHTCCIAHRGIPAPDVCVGTPRWMAPEVLRAMHKPNLYGLVSSSLFCQFKVES 1041 (1074)
Q Consensus 963 ~-~~~~~~~~~~VKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~vGT~~YmAPEvL~~~~~~~~y~~ksDIWS~G~SLG~ 1041 (1074)
. ++. +||+|||+|+....... .+.+|||.|||||++.+ .|+.++||| |+||
T Consensus 166 ~~~g~-------vKl~DFGla~~~~~~~~------------~~~~GTp~YmAPE~~~~-----~y~~~~Diw----SlGv 217 (290)
T 3fpq_A 166 GPTGS-------VKIGDLGLATLKRASFA------------KAVIGTPEFMAPEMYEE-----KYDESVDVY----AFGM 217 (290)
T ss_dssp STTSC-------EEECCTTGGGGCCTTSB------------EESCSSCCCCCGGGGGT-----CCCTHHHHH----HHHH
T ss_pred CCCCC-------EEEEECCCCEECCCCCC------------CCCCCCCCCCCHHHCCC-----CCCCHHHHH----HHHH
T ss_conf 89998-------89972768876798766------------77624802018978079-----999278888----7999
Q ss_pred HHHHHHHCCCCCCCCCHHHHH-HHHHCCCC
Q ss_conf 999998199998875799999-99961999
Q 001456 1042 KLIICLVIFPQFRYLKLFYHF-FFLLKGAP 1070 (1074)
Q Consensus 1042 iL~el~tG~~Pf~~~~~~~~i-~~il~g~P 1070 (1074)
++|+|++|.+||........+ ..+..+.+
T Consensus 218 ilyelltg~~Pf~~~~~~~~~~~~i~~~~~ 247 (290)
T 3fpq_A 218 CMLEMATSEYPYSECQNAAQIYRRVTSGVK 247 (290)
T ss_dssp HHHHHHHSSCTTTTCSSHHHHHHHHTTTCC
T ss_pred HHHHHHHCCCCCCCCCCHHHHHHHHHCCCC
T ss_conf 999999788999999819999999973899
No 9
>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*
Probab=1.00 E-value=1 Score=359.43 Aligned_cols=227 Identities=22% Similarity=0.242 Sum_probs=184.3
Q ss_pred CCCCCCCEEEEEEEEECCEEEEEEEECC-----CCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEE
Q ss_conf 9889994387066310964999999999-----20899999704689996898765562999999997159998004764
Q 001456 802 PGSFPSLSSCDEAGKSVSSSLFRCKFGS-----ADAAAKVRTLKVCGSSADEIRNFEYSCLGEVRMLGALRHSCIVEMYG 876 (1074)
Q Consensus 802 ~~~~~~y~i~~~LG~G~fG~Vyka~~~~-----~~vaVKvk~l~~~~~~~~~~~~~~~~~lrEi~iL~~L~HpNIV~l~g 876 (1074)
.++.++|.+.++||+|+||.||+|++.. ++..|+||.++.. ..... +.|.+|+.+|++|+|||||+++|
T Consensus 9 ~I~r~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~--~~~~~----~~f~~E~~il~~l~HpnIV~l~g 82 (299)
T 4asz_A 9 HIKRHNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDA--SDNAR----KDFHREAELLTNLQHEHIVKFYG 82 (299)
T ss_dssp BCCGGGEEEEEEEEC--CCCEEEEEECSCC----CEEEEEEEECSC--CHHHH----HHHHHHHHHHTTCCCTTBCCEEE
T ss_pred CCCHHHEEEEEEEEECCCCEEEEEEECCCCCCCCCEEEEEEEECCC--CHHHH----HHHHHHHHHHHHCCCCCCCCEEE
T ss_conf 1488892982498207882999999877666778879999996777--85899----99999999998589988862879
Q ss_pred EEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHC--------CCCCCCCHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 7975898789999985456411999913599999999999730--------49987899999999999999999999599
Q 001456 877 HKISSKWLPSADGNPEHHLLQSAIFMEYVKGGSVKNYIEKLSE--------TGEKHVSVKLALFIAQDVAAALVELHSKH 948 (1074)
Q Consensus 877 ~~~~~~~l~~~~~~~~~~~~~~~IVmEy~~gGSL~~~L~~~~~--------~~~~~l~~~~~~~i~~qIa~GL~yLHs~g 948 (1074)
++...+.+ |||||||+||+|.++|++... .....+++..+..|+.|++.||.|||+++
T Consensus 83 ~~~~~~~~--------------~lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~ 148 (299)
T 4asz_A 83 VCVEGDPL--------------IMVFEYMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHIAQQIAAGMVYLASQH 148 (299)
T ss_dssp EECSSSSE--------------EEEEECCTTCBHHHHHHHTSHHHHHC----CCCCCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred EEEECCEE--------------EEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99569989--------------9999858999689999860864211123577788999999999999999999997599
Q ss_pred CCCCCCCCCCEEEECCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCC
Q ss_conf 22148999986780588778999939992023441035656532334678899975447974240554402557777885
Q 001456 949 IMHRDIKSENILIDLERKKADGKPVVKLCDFDRAVPLRSFLHTCCIAHRGIPAPDVCVGTPRWMAPEVLRAMHKPNLYGL 1028 (1074)
Q Consensus 949 IIHRDLKp~NILId~~~~~~~~~~~VKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~vGT~~YmAPEvL~~~~~~~~y~~ 1028 (1074)
||||||||+|||++.++. +||+|||+|+......... .....+||+.|||||++.+ ..|+.
T Consensus 149 iiHRDlKp~NILl~~~~~-------~Ki~DFGla~~~~~~~~~~--------~~~~~~gt~~ymAPE~~~~----~~~~~ 209 (299)
T 4asz_A 149 FVHRDLATRNCLVGENLL-------VKIGDFGMSRDVYSTDYYR--------VGGHTMLPIRWMPPESIMY----RKFTT 209 (299)
T ss_dssp CCCSCCSGGGEEECGGGC-------EEECCCSCHHHHTGGGCEE--------ETTTEEECGGGCCHHHHHH----CCCCH
T ss_pred CCCCCCCHHHEEECCCCC-------EEECCCCCCEECCCCCCEE--------ECCCEECCHHHCCHHHHCC----CCCCC
T ss_conf 046765776389879986-------8988730010067887416--------6475134701038898707----99970
Q ss_pred CCCCCCCHHHHHHHHHHHHH-CCCCCCCCCHHHHHHHHHCCCCC
Q ss_conf 33420111439999999981-99998875799999999619999
Q 001456 1029 VSSSLFCQFKVESKLIICLV-IFPQFRYLKLFYHFFFLLKGAPS 1071 (1074)
Q Consensus 1029 ksDIWS~G~SLG~iL~el~t-G~~Pf~~~~~~~~i~~il~g~P~ 1071 (1074)
++||| |+|++||||+| |..||......+.+..+.+|.++
T Consensus 210 k~DVw----S~Gvvl~Ellt~G~~Pf~~~~~~~~~~~i~~~~~~ 249 (299)
T 4asz_A 210 ESDVW----SLGVVLWEIFTYGKQPWYQLSNNEVIECITQGRVL 249 (299)
T ss_dssp HHHHH----HHHHHHHHHHTTTCCTTTTSCHHHHHHHHHHTCCC
T ss_pred HHHHH----HHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCC
T ss_conf 36677----88999999980899999998999999999808988
No 10
>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=358.93 Aligned_cols=217 Identities=24% Similarity=0.317 Sum_probs=174.4
Q ss_pred CCCCCCCEEEEEEEEECCEEEEEEEECCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECC
Q ss_conf 98899943870663109649999999992089999970468999689876556299999999715999800476479758
Q 001456 802 PGSFPSLSSCDEAGKSVSSSLFRCKFGSADAAAKVRTLKVCGSSADEIRNFEYSCLGEVRMLGALRHSCIVEMYGHKISS 881 (1074)
Q Consensus 802 ~~~~~~y~i~~~LG~G~fG~Vyka~~~~~~vaVKvk~l~~~~~~~~~~~~~~~~~lrEi~iL~~L~HpNIV~l~g~~~~~ 881 (1074)
.++.+++++.++||+|+||+||+|++.+ .+|||+ ++......+..+. |.+|+.+|++++|||||+++|++...
T Consensus 32 ei~~~~l~l~~~iG~G~fG~Vy~~~~~~-~vAvK~--~~~~~~~~~~~~~----f~~E~~il~~l~HpNIV~l~g~~~~~ 104 (307)
T 3omv_A 32 EIEASEVMLSTRIGSGSFGTVYKGKWHG-DVAVKI--LKVVDPTPEQFQA----FRNEVAVLRKTRHVNILLFMGYMTKD 104 (307)
T ss_dssp BCCTTSCCEEEECCCCSSSEEEEEESSS-EEEEEE--CCCSSCCHHHHHH----HHHHHHHHTTCCCTTBCCEEEEECSS
T ss_pred EECHHHEEEEEEEEECCCCEEEEEEECC-CEEEEE--EEECCCCHHHHHH----HHHHHHHHHHCCCCCEEEEEEEEECC
T ss_conf 8747994984498208886899999899-689999--9726899999999----99999999858998874699999789
Q ss_pred CCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEE
Q ss_conf 98789999985456411999913599999999999730499878999999999999999999995992214899998678
Q 001456 882 KWLPSADGNPEHHLLQSAIFMEYVKGGSVKNYIEKLSETGEKHVSVKLALFIAQDVAAALVELHSKHIMHRDIKSENILI 961 (1074)
Q Consensus 882 ~~l~~~~~~~~~~~~~~~IVmEy~~gGSL~~~L~~~~~~~~~~l~~~~~~~i~~qIa~GL~yLHs~gIIHRDLKp~NILI 961 (1074)
. +|||||||+||+|.++++. ....+++..+..|+.|++.||.|||+++||||||||+|||+
T Consensus 105 ~---------------~~iVmEy~~gGsL~~~l~~----~~~~l~~~~~~~i~~qia~gL~yLH~~~IiHRDlKp~NILl 165 (307)
T 3omv_A 105 N---------------LAIVTQWCEGSSLYKHLHV----QETKFQMFQLIDIARQTAQGMDYLHAKNIIHRDMKSNNIFL 165 (307)
T ss_dssp S---------------CEEEEECCSSCBHHHHHHT----SCCCCCHHHHHHHHHHHHHHHHHHHHTTCBCSCCCSSSEEE
T ss_pred E---------------EEEEEECCCCCCHHHHHHH----CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHEEE
T ss_conf 5---------------8999974899878898752----48999999999999999999999977995278557899788
Q ss_pred ECCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 05887789999399920234410356565323346788999754479742405544025577778853342011143999
Q 001456 962 DLERKKADGKPVVKLCDFDRAVPLRSFLHTCCIAHRGIPAPDVCVGTPRWMAPEVLRAMHKPNLYGLVSSSLFCQFKVES 1041 (1074)
Q Consensus 962 d~~~~~~~~~~~VKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~vGT~~YmAPEvL~~~~~~~~y~~ksDIWS~G~SLG~ 1041 (1074)
+.++. +||+|||+|+........ ......+||+.|||||++++. ....|+.++||| |+|+
T Consensus 166 ~~~~~-------~Ki~DFGla~~~~~~~~~--------~~~~~~~GT~~ymAPE~l~~~-~~~~y~~ksDVw----S~Gv 225 (307)
T 3omv_A 166 HEGLT-------VKIGDFGLATVKSRWSGS--------QQVEQPTGSVLWMAPEVIRMQ-DNNPFSFQSDVY----SYGI 225 (307)
T ss_dssp ETTEE-------EEECCCSSCBC--------------------CCCCTTSCCHHHHHCC-SSCCCCHHHHHH----HHHH
T ss_pred CCCCC-------EEEEECCCCEECCCCCCC--------EEECCCCCCCCCCCHHHHHCC-CCCCCCCHHHHH----HHHH
T ss_conf 89990-------899441575424667764--------031564468772498786146-899878687757----2899
Q ss_pred HHHHHHHCCCCCCCCCHHHHHHH
Q ss_conf 99999819999887579999999
Q 001456 1042 KLIICLVIFPQFRYLKLFYHFFF 1064 (1074)
Q Consensus 1042 iL~el~tG~~Pf~~~~~~~~i~~ 1064 (1074)
+||||++|..||........+..
T Consensus 226 vl~Elltg~~Pf~~~~~~~~~~~ 248 (307)
T 3omv_A 226 VLYELMTGELPYSHINNRDQIIF 248 (307)
T ss_dssp HHHHHHHSSCTTTTCCCHHHHHH
T ss_pred HHHHHHHCCCCCCCCCHHHHHHH
T ss_conf 99999978899899996999999
Done!