Query 001457
Match_columns 1074
No_of_seqs 537 out of 4808
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 01:18:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001457.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001457hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 2.8E-89 6E-94 821.2 48.0 628 18-690 5-676 (889)
2 PLN03210 Resistant to P. syrin 100.0 2.7E-65 5.9E-70 651.9 50.2 691 159-966 183-910 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 2.1E-43 4.5E-48 387.7 20.1 274 165-440 1-285 (287)
4 PLN00113 leucine-rich repeat r 100.0 2.8E-30 6.1E-35 332.1 24.9 361 508-895 92-468 (968)
5 PLN00113 leucine-rich repeat r 100.0 9.9E-30 2.1E-34 327.1 25.1 496 509-1047 69-585 (968)
6 KOG4194 Membrane glycoprotein 99.9 4.8E-22 1E-26 214.1 11.3 176 510-696 53-235 (873)
7 PLN03210 Resistant to P. syrin 99.9 7E-21 1.5E-25 244.4 23.8 379 508-939 557-946 (1153)
8 KOG0472 Leucine-rich repeat pr 99.8 3.7E-24 8E-29 220.6 -10.3 468 511-1041 47-536 (565)
9 KOG0444 Cytoskeletal regulator 99.8 1.8E-22 4E-27 218.1 -1.2 148 508-658 31-183 (1255)
10 KOG4194 Membrane glycoprotein 99.8 1.6E-21 3.4E-26 210.1 5.1 321 508-889 101-426 (873)
11 KOG0618 Serine/threonine phosp 99.8 1E-22 2.2E-27 231.4 -5.0 460 515-1041 4-484 (1081)
12 KOG0444 Cytoskeletal regulator 99.8 1.1E-21 2.5E-26 212.0 -6.4 323 508-872 54-381 (1255)
13 KOG0472 Leucine-rich repeat pr 99.7 2.5E-21 5.3E-26 199.9 -13.0 442 508-1027 67-544 (565)
14 KOG0618 Serine/threonine phosp 99.7 3.4E-19 7.3E-24 203.1 -0.2 389 531-961 45-488 (1081)
15 KOG0617 Ras suppressor protein 99.5 1.9E-16 4.1E-21 145.0 -4.3 165 522-700 24-191 (264)
16 KOG0617 Ras suppressor protein 99.4 4.3E-15 9.4E-20 136.2 -4.2 149 508-659 32-184 (264)
17 PRK15387 E3 ubiquitin-protein 99.4 3.3E-12 7.1E-17 152.1 17.4 128 512-658 204-332 (788)
18 PRK15387 E3 ubiquitin-protein 99.3 2.5E-11 5.4E-16 144.7 17.7 178 501-716 214-392 (788)
19 PRK15370 E3 ubiquitin-protein 99.3 4.4E-12 9.5E-17 152.3 11.3 134 511-658 180-314 (754)
20 KOG4658 Apoptotic ATPase [Sign 99.3 1.5E-12 3.2E-17 158.8 5.7 125 554-691 522-651 (889)
21 PRK04841 transcriptional regul 99.3 5.6E-10 1.2E-14 143.6 27.2 273 182-487 31-333 (903)
22 PRK15370 E3 ubiquitin-protein 99.2 4E-11 8.6E-16 144.1 13.8 186 502-717 192-378 (754)
23 TIGR03015 pepcterm_ATPase puta 99.2 5.7E-09 1.2E-13 113.3 24.0 176 183-361 43-242 (269)
24 KOG4237 Extracellular matrix p 99.2 2.5E-12 5.5E-17 133.9 -2.3 135 500-634 58-199 (498)
25 KOG4237 Extracellular matrix p 99.1 3.5E-12 7.5E-17 132.9 -3.3 137 520-658 57-198 (498)
26 KOG4341 F-box protein containi 99.1 1.8E-12 4E-17 136.2 -5.6 269 739-1038 157-431 (483)
27 PRK00411 cdc6 cell division co 99.1 2.6E-08 5.7E-13 114.6 27.7 285 162-465 32-357 (394)
28 PF05729 NACHT: NACHT domain 99.1 1E-09 2.2E-14 109.5 11.7 139 184-327 1-163 (166)
29 KOG4341 F-box protein containi 99.0 9.9E-12 2.2E-16 130.8 -6.0 260 738-1026 182-443 (483)
30 TIGR02928 orc1/cdc6 family rep 99.0 3.2E-07 6.9E-12 104.5 29.7 286 162-465 17-349 (365)
31 PF01637 Arch_ATPase: Archaeal 99.0 2.9E-09 6.2E-14 113.2 11.6 192 162-356 1-233 (234)
32 PF14580 LRR_9: Leucine-rich r 98.9 7E-10 1.5E-14 108.3 4.4 133 521-655 9-147 (175)
33 TIGR00635 ruvB Holliday juncti 98.9 6.6E-08 1.4E-12 106.9 19.5 272 159-465 3-288 (305)
34 COG2909 MalT ATP-dependent tra 98.9 1.4E-07 3E-12 109.4 21.6 285 171-488 26-340 (894)
35 PRK00080 ruvB Holliday junctio 98.9 1.3E-07 2.9E-12 105.0 21.0 273 157-465 22-309 (328)
36 PF14580 LRR_9: Leucine-rich r 98.8 2E-09 4.3E-14 105.2 4.1 132 551-690 15-148 (175)
37 cd00116 LRR_RI Leucine-rich re 98.8 1.6E-09 3.5E-14 121.1 3.1 84 551-634 19-119 (319)
38 cd00116 LRR_RI Leucine-rich re 98.7 6.8E-09 1.5E-13 116.1 3.5 129 530-658 80-231 (319)
39 KOG0532 Leucine-rich repeat (L 98.7 1.2E-09 2.7E-14 119.4 -2.5 140 514-658 80-221 (722)
40 KOG1259 Nischarin, modulator o 98.7 1.7E-09 3.8E-14 108.7 -1.6 126 508-635 283-411 (490)
41 KOG0532 Leucine-rich repeat (L 98.7 1E-09 2.2E-14 120.1 -4.7 146 508-658 97-244 (722)
42 COG2256 MGS1 ATPase related to 98.7 1.9E-07 4.1E-12 99.4 12.2 152 174-351 41-206 (436)
43 PRK06893 DNA replication initi 98.6 2.2E-07 4.9E-12 97.1 12.6 148 183-356 39-202 (229)
44 KOG3207 Beta-tubulin folding c 98.6 1.4E-08 3.1E-13 108.1 2.4 206 508-717 120-337 (505)
45 COG4886 Leucine-rich repeat (L 98.5 6.5E-08 1.4E-12 111.4 5.4 173 528-716 113-287 (394)
46 KOG1259 Nischarin, modulator o 98.5 1.1E-08 2.3E-13 103.2 -1.1 129 554-694 283-411 (490)
47 PRK13342 recombination factor 98.5 1.5E-06 3.1E-11 99.8 15.3 174 160-359 12-198 (413)
48 KOG3207 Beta-tubulin folding c 98.5 2.1E-08 4.7E-13 106.7 -0.5 130 528-658 118-256 (505)
49 COG4886 Leucine-rich repeat (L 98.4 1.7E-07 3.8E-12 107.9 5.4 175 508-697 115-292 (394)
50 PTZ00112 origin recognition co 98.4 4.5E-05 9.8E-10 89.7 24.5 197 162-361 757-986 (1164)
51 cd01128 rho_factor Transcripti 98.4 6.1E-07 1.3E-11 93.8 8.6 89 183-271 16-115 (249)
52 TIGR03420 DnaA_homol_Hda DnaA 98.4 1.6E-06 3.4E-11 91.4 11.9 167 164-358 21-202 (226)
53 PF13173 AAA_14: AAA domain 98.4 3.7E-07 8E-12 86.0 5.9 119 183-319 2-127 (128)
54 PF13401 AAA_22: AAA domain; P 98.3 1.1E-06 2.4E-11 83.6 7.6 112 183-296 4-125 (131)
55 PRK07003 DNA polymerase III su 98.3 2.7E-05 5.9E-10 91.2 19.8 183 156-357 12-221 (830)
56 PRK09376 rho transcription ter 98.3 1.4E-06 3.1E-11 94.4 8.7 87 184-270 170-267 (416)
57 PRK05564 DNA polymerase III su 98.3 1.4E-05 3E-10 88.2 16.9 172 161-355 5-188 (313)
58 PF13855 LRR_8: Leucine rich r 98.3 4.1E-07 8.9E-12 72.8 3.1 58 532-589 2-60 (61)
59 PF05496 RuvB_N: Holliday junc 98.3 2.3E-05 5.1E-10 78.3 15.9 171 158-358 22-222 (233)
60 KOG2120 SCF ubiquitin ligase, 98.3 2.3E-08 4.9E-13 101.0 -5.4 140 853-1020 234-374 (419)
61 cd00009 AAA The AAA+ (ATPases 98.3 5E-06 1.1E-10 80.9 10.8 121 164-298 2-131 (151)
62 KOG2028 ATPase related to the 98.3 1E-05 2.2E-10 84.4 12.7 155 175-351 156-330 (554)
63 PLN03150 hypothetical protein; 98.3 1.7E-06 3.6E-11 104.4 8.1 101 557-658 420-525 (623)
64 PLN03150 hypothetical protein; 98.2 2.2E-06 4.8E-11 103.3 8.8 107 532-638 419-530 (623)
65 PF13855 LRR_8: Leucine rich r 98.2 1.5E-06 3.2E-11 69.6 4.3 57 555-611 1-60 (61)
66 TIGR02903 spore_lon_C ATP-depe 98.2 0.00025 5.4E-09 84.9 25.0 199 158-360 152-398 (615)
67 PRK06645 DNA polymerase III su 98.2 3.2E-05 6.9E-10 89.2 16.3 193 155-353 16-225 (507)
68 PRK14949 DNA polymerase III su 98.2 3E-05 6.6E-10 92.7 16.2 183 156-357 12-220 (944)
69 PRK04195 replication factor C 98.2 0.00013 2.8E-09 85.6 21.5 254 156-447 10-279 (482)
70 PRK12323 DNA polymerase III su 98.2 2.1E-05 4.6E-10 90.9 14.1 199 156-357 12-225 (700)
71 PRK14963 DNA polymerase III su 98.2 8.3E-05 1.8E-09 86.3 19.2 194 156-354 10-214 (504)
72 PLN03025 replication factor C 98.2 1.8E-05 4E-10 87.5 13.2 179 156-351 9-194 (319)
73 COG1474 CDC6 Cdc6-related prot 98.2 0.00016 3.5E-09 80.4 20.4 196 162-360 19-241 (366)
74 PRK14961 DNA polymerase III su 98.1 6E-05 1.3E-09 84.8 17.3 191 157-354 13-217 (363)
75 PRK08084 DNA replication initi 98.1 2.9E-05 6.3E-10 81.5 13.7 162 166-355 30-207 (235)
76 PRK08727 hypothetical protein; 98.1 2.8E-05 6.1E-10 81.5 13.4 146 183-354 41-201 (233)
77 PRK13341 recombination factor 98.1 1.4E-05 3.1E-10 96.2 12.5 169 157-351 25-211 (725)
78 COG3903 Predicted ATPase [Gene 98.1 4.9E-06 1.1E-10 89.6 7.6 289 183-487 14-315 (414)
79 PRK14960 DNA polymerase III su 98.1 3.8E-05 8.1E-10 89.1 15.2 193 156-355 11-217 (702)
80 PTZ00202 tuzin; Provisional 98.1 0.00012 2.6E-09 79.9 18.0 161 160-327 262-434 (550)
81 TIGR00767 rho transcription te 98.1 8.5E-06 1.8E-10 89.0 9.2 87 184-270 169-266 (415)
82 PRK12402 replication factor C 98.1 3.5E-05 7.5E-10 86.8 14.6 193 159-354 14-223 (337)
83 PRK14962 DNA polymerase III su 98.1 5.9E-05 1.3E-09 86.8 15.9 187 156-361 10-223 (472)
84 PRK14956 DNA polymerase III su 98.1 3.3E-05 7.1E-10 87.2 13.4 191 156-352 14-217 (484)
85 KOG2120 SCF ubiquitin ligase, 98.1 1.7E-07 3.7E-12 94.8 -4.8 183 601-837 186-374 (419)
86 KOG2982 Uncharacterized conser 98.0 2.3E-06 4.9E-11 86.8 2.6 98 556-656 46-154 (418)
87 TIGR01242 26Sp45 26S proteasom 98.0 6.2E-05 1.4E-09 85.0 14.4 173 159-351 121-328 (364)
88 PRK14957 DNA polymerase III su 98.0 0.0001 2.2E-09 85.7 16.1 184 156-358 12-222 (546)
89 PRK00440 rfc replication facto 98.0 9.1E-05 2E-09 82.7 15.5 178 157-353 14-199 (319)
90 TIGR00678 holB DNA polymerase 98.0 0.00014 2.9E-09 73.9 15.1 155 172-352 4-186 (188)
91 PRK15386 type III secretion pr 98.0 1.3E-05 2.9E-10 88.1 7.6 136 825-1020 51-188 (426)
92 COG3899 Predicted ATPase [Gene 98.0 0.0003 6.5E-09 87.3 19.9 260 162-431 2-333 (849)
93 PRK09112 DNA polymerase III su 98.0 0.00018 4E-09 79.6 16.2 193 159-358 22-241 (351)
94 PRK09087 hypothetical protein; 97.9 9.8E-05 2.1E-09 76.7 12.9 140 183-356 44-194 (226)
95 PRK07994 DNA polymerase III su 97.9 0.00013 2.8E-09 86.1 15.2 195 156-357 12-220 (647)
96 PRK14951 DNA polymerase III su 97.9 0.00016 3.5E-09 85.2 15.9 193 157-355 13-223 (618)
97 PRK15386 type III secretion pr 97.9 2.3E-05 4.9E-10 86.3 8.0 58 770-841 51-109 (426)
98 PRK14964 DNA polymerase III su 97.9 0.00018 4E-09 82.3 15.5 179 156-353 9-213 (491)
99 PRK14958 DNA polymerase III su 97.9 0.00013 2.8E-09 85.0 14.5 181 155-354 11-217 (509)
100 PRK08691 DNA polymerase III su 97.9 0.00013 2.9E-09 85.5 14.2 181 155-354 11-217 (709)
101 KOG1644 U2-associated snRNP A' 97.9 2.2E-05 4.7E-10 75.8 6.1 82 510-591 43-126 (233)
102 PRK07940 DNA polymerase III su 97.9 0.00038 8.1E-09 78.3 17.0 170 161-357 6-213 (394)
103 PF00308 Bac_DnaA: Bacterial d 97.9 0.00019 4E-09 74.4 13.6 153 183-352 34-203 (219)
104 PRK14087 dnaA chromosomal repl 97.9 0.00026 5.7E-09 81.5 16.0 162 183-358 141-320 (450)
105 TIGR02397 dnaX_nterm DNA polym 97.9 0.00038 8.3E-09 78.9 17.1 182 157-358 11-219 (355)
106 PRK07471 DNA polymerase III su 97.8 3.7E-05 8E-10 85.5 8.2 189 160-357 19-238 (365)
107 PRK08903 DnaA regulatory inact 97.8 0.00016 3.5E-09 75.9 12.7 148 183-361 42-203 (227)
108 PF13191 AAA_16: AAA ATPase do 97.8 5.6E-05 1.2E-09 76.7 8.7 45 162-206 2-47 (185)
109 KOG0531 Protein phosphatase 1, 97.8 2E-06 4.4E-11 99.1 -2.2 105 528-634 92-197 (414)
110 PRK14955 DNA polymerase III su 97.8 0.00017 3.6E-09 82.2 13.3 196 157-354 13-225 (397)
111 PRK05642 DNA replication initi 97.8 0.00021 4.6E-09 74.9 13.0 149 183-357 45-208 (234)
112 PRK05896 DNA polymerase III su 97.8 0.00032 6.9E-09 81.7 15.4 196 156-359 12-223 (605)
113 KOG1859 Leucine-rich repeat pr 97.8 3.1E-07 6.6E-12 103.6 -8.7 171 508-693 108-290 (1096)
114 KOG3665 ZYG-1-like serine/thre 97.8 7.5E-06 1.6E-10 98.2 0.9 144 509-653 122-280 (699)
115 PRK14959 DNA polymerase III su 97.7 0.0023 4.9E-08 75.2 20.9 196 157-361 13-225 (624)
116 TIGR02881 spore_V_K stage V sp 97.7 0.00023 5E-09 76.3 12.0 130 183-328 42-192 (261)
117 TIGR02880 cbbX_cfxQ probable R 97.7 0.00045 9.7E-09 74.7 13.8 128 185-328 60-209 (284)
118 PRK14969 DNA polymerase III su 97.7 0.00043 9.3E-09 81.3 14.6 177 157-352 13-215 (527)
119 PF05621 TniB: Bacterial TniB 97.7 0.00076 1.6E-08 71.1 14.7 196 156-352 33-256 (302)
120 KOG3665 ZYG-1-like serine/thre 97.7 2E-05 4.2E-10 94.7 3.3 129 530-658 121-260 (699)
121 PF12799 LRR_4: Leucine Rich r 97.7 3.2E-05 7E-10 56.4 3.0 36 556-591 2-37 (44)
122 TIGR00362 DnaA chromosomal rep 97.7 0.002 4.3E-08 74.1 18.9 154 183-353 136-306 (405)
123 KOG0989 Replication factor C, 97.7 0.0003 6.6E-09 72.6 10.6 188 154-358 30-232 (346)
124 PRK08451 DNA polymerase III su 97.7 0.00096 2.1E-08 77.3 16.1 183 156-357 10-218 (535)
125 KOG0531 Protein phosphatase 1, 97.7 5E-06 1.1E-10 95.8 -2.5 126 529-658 70-196 (414)
126 PRK14970 DNA polymerase III su 97.7 0.0011 2.5E-08 75.1 16.7 177 157-352 14-204 (367)
127 PRK03992 proteasome-activating 97.6 0.00057 1.2E-08 77.5 13.9 171 161-351 132-337 (389)
128 CHL00181 cbbX CbbX; Provisiona 97.6 0.00076 1.6E-08 72.8 14.2 129 184-328 60-210 (287)
129 PRK07764 DNA polymerase III su 97.6 0.00073 1.6E-08 82.8 15.7 175 156-353 11-217 (824)
130 PRK14952 DNA polymerase III su 97.6 0.0012 2.6E-08 77.7 16.6 197 156-361 9-224 (584)
131 KOG1947 Leucine rich repeat pr 97.6 3.6E-06 7.7E-11 100.3 -4.6 140 745-889 187-331 (482)
132 PRK11331 5-methylcytosine-spec 97.6 0.00026 5.6E-09 79.1 10.3 103 162-271 177-284 (459)
133 PRK09111 DNA polymerase III su 97.6 0.00081 1.8E-08 79.6 15.0 196 155-356 19-232 (598)
134 KOG4579 Leucine-rich repeat (L 97.6 3.9E-06 8.4E-11 75.4 -3.3 90 529-618 51-141 (177)
135 PF12799 LRR_4: Leucine Rich r 97.6 6.9E-05 1.5E-09 54.7 3.8 34 601-634 2-35 (44)
136 PHA02544 44 clamp loader, smal 97.6 0.00043 9.3E-09 77.0 12.1 149 155-325 16-171 (316)
137 PRK06620 hypothetical protein; 97.6 0.0007 1.5E-08 69.7 12.7 130 184-351 45-183 (214)
138 PRK00149 dnaA chromosomal repl 97.6 0.0031 6.6E-08 73.5 19.4 177 183-376 148-349 (450)
139 PRK14954 DNA polymerase III su 97.6 0.0012 2.6E-08 78.3 16.0 195 156-352 12-223 (620)
140 PF14516 AAA_35: AAA-like doma 97.6 0.0045 9.8E-08 68.6 19.7 192 165-364 16-246 (331)
141 PRK07133 DNA polymerase III su 97.6 0.0018 3.9E-08 77.2 17.1 176 156-354 14-216 (725)
142 KOG2227 Pre-initiation complex 97.6 0.0043 9.2E-08 68.1 18.3 190 161-350 151-361 (529)
143 PRK14971 DNA polymerase III su 97.6 0.0014 3.1E-08 78.2 16.4 178 157-354 14-219 (614)
144 PRK14950 DNA polymerase III su 97.5 0.0021 4.5E-08 77.1 17.2 195 157-357 13-221 (585)
145 KOG1644 U2-associated snRNP A' 97.5 0.00014 2.9E-09 70.4 5.5 100 531-632 42-149 (233)
146 KOG1947 Leucine rich repeat pr 97.5 1.1E-05 2.3E-10 96.2 -2.5 148 744-894 159-310 (482)
147 KOG1859 Leucine-rich repeat pr 97.5 1.9E-06 4E-11 97.5 -8.4 125 508-635 163-291 (1096)
148 PRK14953 DNA polymerase III su 97.5 0.0035 7.6E-08 72.8 17.9 179 156-357 12-220 (486)
149 TIGR02639 ClpA ATP-dependent C 97.5 0.0011 2.5E-08 81.8 14.7 155 157-327 179-358 (731)
150 TIGR03345 VI_ClpV1 type VI sec 97.5 0.0015 3.3E-08 81.2 15.8 177 156-349 183-388 (852)
151 TIGR03689 pup_AAA proteasome A 97.5 0.00088 1.9E-08 77.1 12.7 162 155-328 177-379 (512)
152 KOG1909 Ran GTPase-activating 97.5 2E-05 4.2E-10 82.5 -0.6 130 529-658 90-251 (382)
153 COG1373 Predicted ATPase (AAA+ 97.5 0.00093 2E-08 75.7 12.4 134 165-322 22-162 (398)
154 PRK10536 hypothetical protein; 97.5 0.00087 1.9E-08 69.2 10.8 55 156-214 51-108 (262)
155 PRK06305 DNA polymerase III su 97.5 0.0039 8.4E-08 72.0 17.5 182 157-357 14-223 (451)
156 KOG2543 Origin recognition com 97.4 0.0009 2E-08 71.3 11.0 161 162-326 8-192 (438)
157 PRK14088 dnaA chromosomal repl 97.4 0.0025 5.4E-08 73.4 15.7 153 183-351 130-299 (440)
158 PTZ00361 26 proteosome regulat 97.4 0.00096 2.1E-08 75.7 11.9 156 155-328 178-368 (438)
159 smart00382 AAA ATPases associa 97.4 0.00044 9.5E-09 66.5 8.1 89 184-273 3-92 (148)
160 PRK14086 dnaA chromosomal repl 97.4 0.0047 1E-07 72.2 17.6 151 184-351 315-482 (617)
161 CHL00095 clpC Clp protease ATP 97.4 0.0021 4.6E-08 80.4 15.9 154 158-326 177-353 (821)
162 PRK14948 DNA polymerase III su 97.4 0.0037 8E-08 74.7 17.0 195 157-357 13-222 (620)
163 PRK12422 chromosomal replicati 97.4 0.00098 2.1E-08 76.5 11.3 150 183-349 141-305 (445)
164 PRK06647 DNA polymerase III su 97.4 0.0041 8.9E-08 73.4 16.6 192 156-356 12-219 (563)
165 COG2255 RuvB Holliday junction 97.3 0.014 3E-07 60.1 17.5 186 158-355 24-221 (332)
166 PF00004 AAA: ATPase family as 97.3 0.00084 1.8E-08 63.6 8.5 21 186-206 1-21 (132)
167 PRK05707 DNA polymerase III su 97.3 0.0062 1.4E-07 67.0 16.0 95 258-357 105-203 (328)
168 KOG4579 Leucine-rich repeat (L 97.3 2.8E-05 6.1E-10 70.0 -1.9 109 533-642 29-141 (177)
169 PTZ00454 26S protease regulato 97.3 0.0038 8.3E-08 70.5 14.4 149 183-351 179-351 (398)
170 PRK05563 DNA polymerase III su 97.3 0.0077 1.7E-07 71.5 17.2 191 156-354 12-217 (559)
171 PRK08181 transposase; Validate 97.2 0.0018 3.9E-08 68.7 10.7 71 184-270 107-178 (269)
172 CHL00176 ftsH cell division pr 97.2 0.003 6.4E-08 75.6 13.1 174 157-350 183-387 (638)
173 PRK08118 topology modulation p 97.2 0.0002 4.4E-09 70.6 2.6 31 185-215 3-37 (167)
174 PRK14965 DNA polymerase III su 97.2 0.0055 1.2E-07 73.1 14.7 193 156-357 12-221 (576)
175 PRK07399 DNA polymerase III su 97.1 0.012 2.5E-07 64.5 15.9 192 161-357 5-221 (314)
176 COG1222 RPT1 ATP-dependent 26S 97.1 0.0091 2E-07 63.5 14.1 201 154-376 145-392 (406)
177 TIGR00763 lon ATP-dependent pr 97.1 0.017 3.7E-07 71.9 19.0 48 163-210 323-375 (775)
178 PRK11034 clpA ATP-dependent Cl 97.1 0.0029 6.3E-08 77.1 11.6 156 157-327 183-362 (758)
179 TIGR01241 FtsH_fam ATP-depende 97.0 0.014 3.1E-07 68.8 16.8 149 183-351 88-260 (495)
180 COG3267 ExeA Type II secretory 97.0 0.032 7E-07 56.8 16.5 175 183-359 51-247 (269)
181 PF04665 Pox_A32: Poxvirus A32 97.0 0.0026 5.7E-08 65.5 9.0 35 184-218 14-49 (241)
182 COG0593 DnaA ATPase involved i 97.0 0.017 3.8E-07 64.1 15.9 130 182-328 112-258 (408)
183 KOG0731 AAA+-type ATPase conta 97.0 0.0044 9.5E-08 73.3 11.8 180 156-353 310-520 (774)
184 TIGR03346 chaperone_ClpB ATP-d 97.0 0.0093 2E-07 75.0 15.4 157 156-327 169-349 (852)
185 KOG1909 Ran GTPase-activating 97.0 0.00019 4E-09 75.4 0.3 126 509-634 157-309 (382)
186 PRK12608 transcription termina 97.0 0.004 8.7E-08 68.1 10.5 100 170-270 121-231 (380)
187 PRK08116 hypothetical protein; 96.9 0.0015 3.2E-08 69.9 6.4 100 184-296 115-220 (268)
188 PRK10865 protein disaggregatio 96.9 0.012 2.7E-07 73.6 15.0 155 157-327 175-354 (857)
189 TIGR00602 rad24 checkpoint pro 96.9 0.0041 8.9E-08 73.7 10.2 53 154-206 78-133 (637)
190 COG0466 Lon ATP-dependent Lon 96.9 0.084 1.8E-06 61.6 19.8 155 163-327 326-508 (782)
191 KOG0730 AAA+-type ATPase [Post 96.8 0.045 9.7E-07 63.1 17.5 150 182-349 467-647 (693)
192 PF05673 DUF815: Protein of un 96.8 0.036 7.9E-07 56.8 14.7 24 183-206 52-75 (249)
193 TIGR02237 recomb_radB DNA repa 96.8 0.0081 1.8E-07 62.1 10.6 47 182-229 11-58 (209)
194 PRK08769 DNA polymerase III su 96.8 0.047 1E-06 59.5 16.6 171 167-357 11-208 (319)
195 PRK07261 topology modulation p 96.8 0.0038 8.2E-08 61.9 7.4 31 185-215 2-36 (171)
196 KOG2739 Leucine-rich acidic nu 96.7 0.00056 1.2E-08 69.4 1.4 18 575-592 88-105 (260)
197 PHA00729 NTP-binding motif con 96.7 0.0078 1.7E-07 61.3 9.5 34 171-206 7-40 (226)
198 KOG2004 Mitochondrial ATP-depe 96.7 0.0076 1.7E-07 69.4 9.9 96 163-270 414-516 (906)
199 PF13177 DNA_pol3_delta2: DNA 96.7 0.013 2.7E-07 57.6 10.3 133 165-315 2-162 (162)
200 PRK10787 DNA-binding ATP-depen 96.7 0.03 6.5E-07 69.0 15.7 156 162-327 324-506 (784)
201 PRK08058 DNA polymerase III su 96.7 0.043 9.4E-07 60.8 15.6 154 165-326 11-181 (329)
202 KOG2982 Uncharacterized conser 96.6 0.00042 9.2E-09 70.8 -0.6 83 529-611 69-157 (418)
203 KOG2123 Uncharacterized conser 96.6 0.00012 2.7E-09 73.9 -4.5 100 530-654 18-123 (388)
204 PRK06090 DNA polymerase III su 96.6 0.19 4E-06 54.9 19.2 173 168-357 11-201 (319)
205 PRK06871 DNA polymerase III su 96.5 0.095 2.1E-06 57.3 16.7 173 168-354 10-200 (325)
206 PRK09183 transposase/IS protei 96.5 0.0059 1.3E-07 65.0 7.1 23 184-206 103-125 (259)
207 CHL00195 ycf46 Ycf46; Provisio 96.5 0.022 4.7E-07 66.0 12.2 151 183-351 259-429 (489)
208 cd01123 Rad51_DMC1_radA Rad51_ 96.5 0.014 2.9E-07 61.8 9.9 87 183-270 19-126 (235)
209 PRK10865 protein disaggregatio 96.4 0.019 4.2E-07 71.8 12.3 57 163-219 571-635 (857)
210 TIGR02640 gas_vesic_GvpN gas v 96.4 0.063 1.4E-06 57.5 14.7 56 166-228 8-64 (262)
211 PF10443 RNA12: RNA12 protein; 96.4 0.3 6.4E-06 54.4 19.7 191 165-364 1-285 (431)
212 PF13207 AAA_17: AAA domain; P 96.4 0.0025 5.3E-08 59.4 3.3 22 185-206 1-22 (121)
213 PRK06526 transposase; Provisio 96.4 0.0028 6.1E-08 66.9 4.0 24 183-206 98-121 (254)
214 PRK12377 putative replication 96.4 0.014 3.1E-07 61.1 9.1 72 183-269 101-173 (248)
215 PRK07952 DNA replication prote 96.3 0.022 4.8E-07 59.6 10.0 91 167-271 83-174 (244)
216 KOG0991 Replication factor C, 96.3 0.0073 1.6E-07 59.8 5.8 100 156-271 23-125 (333)
217 TIGR02012 tigrfam_recA protein 96.3 0.013 2.8E-07 63.5 8.5 83 183-270 55-144 (321)
218 TIGR01243 CDC48 AAA family ATP 96.3 0.056 1.2E-06 67.2 15.2 149 183-351 487-657 (733)
219 PRK08939 primosomal protein Dn 96.3 0.0085 1.8E-07 65.2 7.0 115 164-295 135-259 (306)
220 TIGR02639 ClpA ATP-dependent C 96.3 0.014 3.1E-07 72.1 9.7 101 163-271 457-565 (731)
221 KOG0741 AAA+-type ATPase [Post 96.2 0.17 3.6E-06 56.7 16.3 156 181-361 536-716 (744)
222 cd00983 recA RecA is a bacter 96.2 0.013 2.7E-07 63.7 7.7 82 183-269 55-143 (325)
223 PRK09354 recA recombinase A; P 96.2 0.014 3.1E-07 63.7 8.0 83 182-269 59-148 (349)
224 cd01393 recA_like RecA is a b 96.2 0.037 8E-07 58.1 11.0 46 183-228 19-71 (226)
225 PRK05541 adenylylsulfate kinas 96.1 0.014 3E-07 58.4 7.3 35 183-217 7-42 (176)
226 TIGR03345 VI_ClpV1 type VI sec 96.1 0.011 2.4E-07 73.7 7.8 104 162-270 568-679 (852)
227 COG1223 Predicted ATPase (AAA+ 96.1 0.077 1.7E-06 53.8 11.7 149 162-328 123-298 (368)
228 PRK06696 uridine kinase; Valid 96.1 0.0092 2E-07 62.3 5.7 42 165-206 3-45 (223)
229 KOG0734 AAA+-type ATPase conta 96.1 0.018 4E-07 64.0 8.0 50 157-206 304-360 (752)
230 KOG2035 Replication factor C, 96.0 0.15 3.3E-06 52.4 13.7 223 161-402 14-282 (351)
231 PRK12727 flagellar biosynthesi 96.0 0.15 3.2E-06 58.7 15.2 84 183-269 350-438 (559)
232 PRK09361 radB DNA repair and r 96.0 0.045 9.7E-07 57.3 10.7 44 183-227 23-67 (225)
233 cd01133 F1-ATPase_beta F1 ATP 96.0 0.042 9.2E-07 57.9 10.2 88 184-271 70-175 (274)
234 TIGR03346 chaperone_ClpB ATP-d 96.0 0.02 4.4E-07 72.0 9.3 105 162-271 567-679 (852)
235 cd01120 RecA-like_NTPases RecA 96.0 0.034 7.5E-07 54.7 9.2 39 185-223 1-40 (165)
236 PRK04132 replication factor C 96.0 0.1 2.2E-06 64.1 14.5 149 191-355 574-729 (846)
237 PF00448 SRP54: SRP54-type pro 95.9 0.029 6.3E-07 56.8 8.5 57 183-239 1-59 (196)
238 TIGR01243 CDC48 AAA family ATP 95.9 0.069 1.5E-06 66.4 13.6 173 159-351 177-381 (733)
239 COG2812 DnaX DNA polymerase II 95.9 0.058 1.2E-06 62.1 11.6 188 156-351 12-214 (515)
240 KOG2739 Leucine-rich acidic nu 95.9 0.0051 1.1E-07 62.7 2.8 82 508-590 42-128 (260)
241 PF07693 KAP_NTPase: KAP famil 95.9 0.33 7.2E-06 54.1 17.8 39 168-206 4-43 (325)
242 TIGR02858 spore_III_AA stage I 95.9 0.045 9.7E-07 58.3 9.9 128 170-301 99-233 (270)
243 COG0542 clpA ATP-binding subun 95.9 0.16 3.5E-06 61.0 15.4 104 162-271 493-605 (786)
244 PRK07667 uridine kinase; Provi 95.9 0.018 3.9E-07 58.5 6.7 38 169-206 3-40 (193)
245 PRK06835 DNA replication prote 95.9 0.017 3.7E-07 63.4 6.8 35 184-218 184-219 (329)
246 KOG0733 Nuclear AAA ATPase (VC 95.9 0.15 3.3E-06 58.1 14.1 94 159-270 189-293 (802)
247 KOG0735 AAA+-type ATPase [Post 95.8 0.053 1.2E-06 62.7 10.6 148 183-350 431-608 (952)
248 CHL00095 clpC Clp protease ATP 95.8 0.029 6.2E-07 70.4 9.5 105 162-271 511-623 (821)
249 PRK06921 hypothetical protein; 95.8 0.033 7.1E-07 59.5 8.4 36 183-218 117-154 (266)
250 KOG0744 AAA+-type ATPase [Post 95.7 0.032 7E-07 58.3 7.8 24 183-206 177-200 (423)
251 TIGR02238 recomb_DMC1 meiotic 95.7 0.075 1.6E-06 58.1 11.2 54 183-237 96-156 (313)
252 COG2884 FtsE Predicted ATPase 95.7 0.052 1.1E-06 52.6 8.5 33 184-216 29-61 (223)
253 PRK07993 DNA polymerase III su 95.7 0.34 7.4E-06 53.6 16.3 175 167-355 9-202 (334)
254 COG5238 RNA1 Ran GTPase-activa 95.7 0.0035 7.7E-08 63.5 0.5 83 552-634 27-131 (388)
255 PF01695 IstB_IS21: IstB-like 95.6 0.021 4.5E-07 57.0 5.9 71 183-270 47-119 (178)
256 COG0470 HolB ATPase involved i 95.6 0.059 1.3E-06 60.2 10.4 134 164-313 5-167 (325)
257 PRK06964 DNA polymerase III su 95.6 0.46 1E-05 52.4 16.7 91 258-357 131-225 (342)
258 PF08423 Rad51: Rad51; InterP 95.6 0.1 2.2E-06 55.4 11.3 86 183-269 38-143 (256)
259 PLN00020 ribulose bisphosphate 95.6 0.051 1.1E-06 59.0 8.9 29 182-210 147-176 (413)
260 COG0464 SpoVK ATPases of the A 95.6 0.18 3.9E-06 59.8 14.7 129 183-329 276-425 (494)
261 KOG1969 DNA replication checkp 95.6 0.037 8.1E-07 64.2 8.3 74 182-271 325-399 (877)
262 COG1618 Predicted nucleotide k 95.5 0.016 3.5E-07 54.4 4.3 30 183-212 5-36 (179)
263 cd01394 radB RadB. The archaea 95.5 0.1 2.2E-06 54.4 10.9 41 183-223 19-60 (218)
264 KOG2123 Uncharacterized conser 95.5 0.00064 1.4E-08 68.9 -5.3 80 508-589 18-99 (388)
265 smart00763 AAA_PrkA PrkA AAA d 95.5 0.015 3.2E-07 63.6 4.6 45 162-206 53-101 (361)
266 PF05659 RPW8: Arabidopsis bro 95.5 0.16 3.5E-06 48.3 10.9 112 5-133 2-113 (147)
267 PRK10733 hflB ATP-dependent me 95.5 0.09 1.9E-06 63.9 11.6 127 184-328 186-336 (644)
268 COG1419 FlhF Flagellar GTP-bin 95.5 0.11 2.3E-06 57.4 10.9 100 167-269 185-291 (407)
269 KOG0739 AAA+-type ATPase [Post 95.4 0.28 6.1E-06 50.8 13.0 71 182-270 165-236 (439)
270 PF00154 RecA: recA bacterial 95.4 0.052 1.1E-06 58.7 8.3 83 183-270 53-142 (322)
271 PLN03187 meiotic recombination 95.3 0.14 3E-06 56.5 11.5 56 182-238 125-187 (344)
272 COG1484 DnaC DNA replication p 95.3 0.05 1.1E-06 57.6 7.9 73 183-270 105-178 (254)
273 PRK06547 hypothetical protein; 95.3 0.024 5.2E-07 56.0 5.1 33 172-206 6-38 (172)
274 TIGR01359 UMP_CMP_kin_fam UMP- 95.3 0.039 8.4E-07 55.7 6.9 22 185-206 1-22 (183)
275 PRK14722 flhF flagellar biosyn 95.3 0.056 1.2E-06 60.0 8.4 84 183-269 137-225 (374)
276 TIGR03877 thermo_KaiC_1 KaiC d 95.3 0.14 3E-06 54.1 11.0 48 182-231 20-68 (237)
277 PRK11034 clpA ATP-dependent Cl 95.3 0.04 8.7E-07 67.4 7.8 101 163-271 461-569 (758)
278 PTZ00301 uridine kinase; Provi 95.3 0.022 4.8E-07 58.2 4.8 24 183-206 3-26 (210)
279 KOG2228 Origin recognition com 95.3 0.24 5.3E-06 52.5 12.2 146 183-328 49-220 (408)
280 KOG0743 AAA+-type ATPase [Post 95.2 1.4 3E-05 49.2 18.6 169 166-364 211-417 (457)
281 PRK04301 radA DNA repair and r 95.2 0.15 3.3E-06 56.3 11.6 54 182-236 101-161 (317)
282 PRK11889 flhF flagellar biosyn 95.2 0.13 2.8E-06 56.8 10.5 24 183-206 241-264 (436)
283 PRK08533 flagellar accessory p 95.2 0.1 2.2E-06 54.6 9.5 46 183-231 24-71 (230)
284 COG0194 Gmk Guanylate kinase [ 95.1 0.05 1.1E-06 52.9 6.4 33 183-220 4-36 (191)
285 PF00485 PRK: Phosphoribulokin 95.1 0.016 3.4E-07 59.1 3.3 22 185-206 1-22 (194)
286 PF01583 APS_kinase: Adenylyls 95.1 0.026 5.7E-07 54.1 4.6 34 184-217 3-37 (156)
287 KOG0728 26S proteasome regulat 95.1 0.28 6.1E-06 49.4 11.6 129 182-327 180-331 (404)
288 PRK00771 signal recognition pa 95.1 0.67 1.5E-05 53.0 16.5 53 183-237 95-151 (437)
289 COG1102 Cmk Cytidylate kinase 95.1 0.029 6.2E-07 52.8 4.5 44 185-239 2-46 (179)
290 COG0468 RecA RecA/RadA recombi 95.1 0.098 2.1E-06 55.5 9.1 87 181-269 58-151 (279)
291 cd02019 NK Nucleoside/nucleoti 95.1 0.019 4.1E-07 47.0 2.9 22 185-206 1-22 (69)
292 KOG3864 Uncharacterized conser 95.1 0.0036 7.8E-08 61.0 -1.6 72 919-998 121-192 (221)
293 PTZ00035 Rad51 protein; Provis 95.0 0.2 4.3E-06 55.5 11.8 55 182-237 117-178 (337)
294 PF13238 AAA_18: AAA domain; P 95.0 0.018 3.8E-07 54.2 3.1 21 186-206 1-21 (129)
295 PRK13949 shikimate kinase; Pro 95.0 0.12 2.6E-06 51.2 9.0 22 185-206 3-24 (169)
296 PF03205 MobB: Molybdopterin g 95.0 0.035 7.6E-07 52.8 4.9 37 184-220 1-39 (140)
297 TIGR02236 recomb_radA DNA repa 95.0 0.23 4.9E-06 54.9 12.1 53 183-236 95-154 (310)
298 KOG0736 Peroxisome assembly fa 95.0 0.14 3E-06 60.1 10.3 99 154-270 666-775 (953)
299 cd01121 Sms Sms (bacterial rad 95.0 0.071 1.5E-06 59.7 8.0 85 183-270 82-169 (372)
300 cd02025 PanK Pantothenate kina 94.9 0.082 1.8E-06 54.8 8.0 38 185-222 1-41 (220)
301 TIGR03499 FlhF flagellar biosy 94.9 0.09 2E-06 56.8 8.6 37 183-219 194-233 (282)
302 TIGR02239 recomb_RAD51 DNA rep 94.9 0.21 4.6E-06 54.8 11.5 55 182-237 95-156 (316)
303 PRK04328 hypothetical protein; 94.9 0.14 3.1E-06 54.2 9.9 39 183-221 23-62 (249)
304 TIGR01425 SRP54_euk signal rec 94.9 1 2.2E-05 51.1 17.0 24 183-206 100-123 (429)
305 PRK06067 flagellar accessory p 94.9 0.15 3.3E-06 53.7 10.1 85 182-269 24-130 (234)
306 PLN03186 DNA repair protein RA 94.9 0.2 4.4E-06 55.3 11.3 54 183-237 123-183 (342)
307 cd01131 PilT Pilus retraction 94.9 0.03 6.4E-07 57.1 4.5 109 184-300 2-112 (198)
308 COG2607 Predicted ATPase (AAA+ 94.9 0.11 2.4E-06 52.3 8.1 116 156-297 59-183 (287)
309 PRK04296 thymidine kinase; Pro 94.9 0.037 8.1E-07 56.0 5.1 109 184-298 3-117 (190)
310 cd01124 KaiC KaiC is a circadi 94.9 0.093 2E-06 53.1 8.1 44 185-230 1-45 (187)
311 cd03115 SRP The signal recogni 94.9 0.096 2.1E-06 52.2 8.0 22 185-206 2-23 (173)
312 COG0563 Adk Adenylate kinase a 94.8 0.043 9.4E-07 54.4 5.4 22 185-206 2-23 (178)
313 PRK13531 regulatory ATPase Rav 94.8 0.067 1.5E-06 60.8 7.5 41 162-206 22-62 (498)
314 KOG0733 Nuclear AAA ATPase (VC 94.8 0.08 1.7E-06 60.2 7.9 149 183-351 545-718 (802)
315 cd03223 ABCD_peroxisomal_ALDP 94.8 0.14 3.1E-06 50.5 9.1 23 184-206 28-50 (166)
316 COG0488 Uup ATPase components 94.8 0.32 6.9E-06 57.0 13.1 23 184-206 349-371 (530)
317 KOG0729 26S proteasome regulat 94.8 0.2 4.3E-06 50.9 9.7 28 183-210 211-239 (435)
318 COG0572 Udk Uridine kinase [Nu 94.8 0.038 8.2E-07 55.6 4.7 28 182-209 7-35 (218)
319 PF13671 AAA_33: AAA domain; P 94.8 0.024 5.2E-07 54.5 3.3 22 185-206 1-22 (143)
320 PF13306 LRR_5: Leucine rich r 94.8 0.072 1.6E-06 50.0 6.5 78 529-609 10-90 (129)
321 TIGR00235 udk uridine kinase. 94.7 0.028 6E-07 57.9 3.8 24 183-206 6-29 (207)
322 PRK05480 uridine/cytidine kina 94.7 0.028 6E-07 58.1 3.8 24 183-206 6-29 (209)
323 cd02027 APSK Adenosine 5'-phos 94.7 0.19 4E-06 48.6 9.3 22 185-206 1-22 (149)
324 PRK08233 hypothetical protein; 94.7 0.026 5.7E-07 56.9 3.5 24 183-206 3-26 (182)
325 PF00560 LRR_1: Leucine Rich R 94.7 0.014 2.9E-07 35.4 0.8 21 601-621 1-21 (22)
326 cd03216 ABC_Carb_Monos_I This 94.7 0.056 1.2E-06 53.2 5.6 112 184-300 27-145 (163)
327 cd03214 ABC_Iron-Siderophores_ 94.6 0.13 2.8E-06 51.7 8.4 115 184-300 26-161 (180)
328 TIGR03574 selen_PSTK L-seryl-t 94.6 0.079 1.7E-06 56.4 7.2 22 185-206 1-22 (249)
329 PF13306 LRR_5: Leucine rich r 94.6 0.071 1.5E-06 50.1 6.1 106 546-657 3-112 (129)
330 KOG0652 26S proteasome regulat 94.6 0.69 1.5E-05 47.0 12.9 59 152-210 163-233 (424)
331 KOG1514 Origin recognition com 94.6 1.3 2.8E-05 51.9 16.9 192 162-359 398-623 (767)
332 TIGR00064 ftsY signal recognit 94.6 0.21 4.5E-06 53.6 10.1 85 183-269 72-164 (272)
333 PRK06762 hypothetical protein; 94.6 0.03 6.6E-07 55.4 3.6 24 183-206 2-25 (166)
334 cd03281 ABC_MSH5_euk MutS5 hom 94.6 0.038 8.1E-07 57.0 4.3 23 183-205 29-51 (213)
335 PRK14974 cell division protein 94.6 0.17 3.7E-06 55.6 9.6 54 183-238 140-197 (336)
336 KOG0924 mRNA splicing factor A 94.5 0.13 2.9E-06 58.9 8.6 123 170-299 362-512 (1042)
337 PRK09270 nucleoside triphospha 94.5 0.18 3.8E-06 52.9 9.2 26 181-206 31-56 (229)
338 PRK08699 DNA polymerase III su 94.5 0.32 6.9E-06 53.6 11.5 24 183-206 21-44 (325)
339 TIGR03878 thermo_KaiC_2 KaiC d 94.4 0.18 4E-06 53.8 9.3 38 183-220 36-74 (259)
340 cd03247 ABCC_cytochrome_bd The 94.4 0.11 2.3E-06 52.2 7.1 23 184-206 29-51 (178)
341 TIGR00554 panK_bact pantothena 94.4 0.16 3.4E-06 54.6 8.6 41 182-222 61-104 (290)
342 PRK12724 flagellar biosynthesi 94.4 0.14 3.1E-06 57.3 8.4 24 183-206 223-246 (432)
343 PRK15455 PrkA family serine pr 94.3 0.056 1.2E-06 62.3 5.3 45 162-206 78-126 (644)
344 PRK03839 putative kinase; Prov 94.3 0.034 7.4E-07 55.9 3.4 22 185-206 2-23 (180)
345 COG1428 Deoxynucleoside kinase 94.3 0.075 1.6E-06 52.8 5.5 47 183-232 4-51 (216)
346 PF00006 ATP-synt_ab: ATP synt 94.3 0.2 4.3E-06 51.3 8.8 86 184-270 16-116 (215)
347 cd00561 CobA_CobO_BtuR ATP:cor 94.3 0.18 3.9E-06 48.7 7.9 115 184-298 3-139 (159)
348 PRK09519 recA DNA recombinatio 94.3 0.14 3E-06 62.1 8.7 82 183-269 60-148 (790)
349 cd03228 ABCC_MRP_Like The MRP 94.3 0.12 2.7E-06 51.3 7.2 33 184-216 29-61 (171)
350 PF08433 KTI12: Chromatin asso 94.3 0.044 9.5E-07 58.4 4.1 23 184-206 2-24 (270)
351 PRK00625 shikimate kinase; Pro 94.2 0.038 8.2E-07 54.6 3.3 22 185-206 2-23 (173)
352 PRK06002 fliI flagellum-specif 94.2 0.15 3.3E-06 57.7 8.4 87 184-270 166-265 (450)
353 PF14532 Sigma54_activ_2: Sigm 94.2 0.013 2.8E-07 55.9 -0.0 23 184-206 22-44 (138)
354 TIGR00150 HI0065_YjeE ATPase, 94.2 0.081 1.8E-06 49.3 5.2 24 183-206 22-45 (133)
355 TIGR01360 aden_kin_iso1 adenyl 94.2 0.039 8.4E-07 56.0 3.4 24 183-206 3-26 (188)
356 COG1066 Sms Predicted ATP-depe 94.1 0.17 3.8E-06 55.3 8.2 84 183-270 93-179 (456)
357 PRK12726 flagellar biosynthesi 94.1 0.2 4.4E-06 55.1 8.8 86 183-269 206-295 (407)
358 PRK04040 adenylate kinase; Pro 94.1 0.042 9.2E-07 55.3 3.5 24 183-206 2-25 (188)
359 cd00267 ABC_ATPase ABC (ATP-bi 94.1 0.12 2.5E-06 50.6 6.5 111 184-302 26-145 (157)
360 PRK12723 flagellar biosynthesi 94.1 0.4 8.7E-06 53.9 11.4 83 183-269 174-264 (388)
361 PTZ00088 adenylate kinase 1; P 94.1 0.049 1.1E-06 56.5 4.0 22 185-206 8-29 (229)
362 COG0542 clpA ATP-binding subun 94.1 0.25 5.4E-06 59.5 10.1 156 157-327 167-346 (786)
363 COG1124 DppF ABC-type dipeptid 94.0 0.062 1.3E-06 54.5 4.3 32 184-215 34-66 (252)
364 PF12775 AAA_7: P-loop contain 94.0 0.1 2.2E-06 55.9 6.2 85 169-269 22-110 (272)
365 PRK05439 pantothenate kinase; 94.0 0.35 7.6E-06 52.4 10.2 26 181-206 84-109 (311)
366 COG4088 Predicted nucleotide k 93.9 0.071 1.5E-06 52.2 4.4 23 184-206 2-24 (261)
367 COG0541 Ffh Signal recognition 93.9 5 0.00011 44.8 18.8 55 183-238 100-157 (451)
368 cd00544 CobU Adenosylcobinamid 93.9 0.18 3.9E-06 49.6 7.4 82 185-269 1-83 (169)
369 COG4608 AppF ABC-type oligopep 93.9 0.21 4.5E-06 52.0 8.0 120 183-305 39-178 (268)
370 PRK14723 flhF flagellar biosyn 93.9 0.33 7.2E-06 58.8 10.9 83 183-269 185-273 (767)
371 PRK12597 F0F1 ATP synthase sub 93.9 0.22 4.7E-06 57.0 8.9 87 184-270 144-248 (461)
372 cd02024 NRK1 Nicotinamide ribo 93.9 0.041 9E-07 54.9 2.8 22 185-206 1-22 (187)
373 PF13481 AAA_25: AAA domain; P 93.8 0.25 5.5E-06 50.2 8.7 38 184-221 33-81 (193)
374 cd02023 UMPK Uridine monophosp 93.8 0.042 9.1E-07 56.2 2.8 22 185-206 1-22 (198)
375 PTZ00494 tuzin-like protein; P 93.8 3.5 7.6E-05 45.9 17.2 161 159-327 373-544 (664)
376 cd02028 UMPK_like Uridine mono 93.8 0.058 1.2E-06 54.0 3.7 22 185-206 1-22 (179)
377 COG3640 CooC CO dehydrogenase 93.8 0.12 2.5E-06 52.2 5.6 39 185-224 2-43 (255)
378 PF07726 AAA_3: ATPase family 93.7 0.037 8.1E-07 50.5 2.0 26 186-211 2-28 (131)
379 PRK06851 hypothetical protein; 93.7 1.1 2.5E-05 49.7 13.8 39 183-221 214-254 (367)
380 PF00625 Guanylate_kin: Guanyl 93.7 0.078 1.7E-06 53.4 4.5 37 183-219 2-39 (183)
381 PRK05703 flhF flagellar biosyn 93.7 0.22 4.7E-06 57.1 8.5 37 183-219 221-260 (424)
382 PF06745 KaiC: KaiC; InterPro 93.7 0.12 2.5E-06 54.2 6.0 84 183-269 19-125 (226)
383 PRK06217 hypothetical protein; 93.6 0.057 1.2E-06 54.4 3.4 22 185-206 3-24 (183)
384 PRK05022 anaerobic nitric oxid 93.6 0.66 1.4E-05 55.0 12.8 60 162-221 189-249 (509)
385 cd01135 V_A-ATPase_B V/A-type 93.6 0.46 1E-05 50.2 9.9 88 184-271 70-178 (276)
386 PF00910 RNA_helicase: RNA hel 93.6 0.051 1.1E-06 49.1 2.6 21 186-206 1-21 (107)
387 PF00560 LRR_1: Leucine Rich R 93.5 0.038 8.2E-07 33.4 1.2 21 556-576 1-21 (22)
388 TIGR02655 circ_KaiC circadian 93.5 0.39 8.4E-06 56.5 10.5 84 183-269 263-363 (484)
389 TIGR02322 phosphon_PhnN phosph 93.5 0.06 1.3E-06 54.0 3.4 23 184-206 2-24 (179)
390 PRK06995 flhF flagellar biosyn 93.5 0.43 9.4E-06 55.0 10.5 55 183-238 256-315 (484)
391 PRK11823 DNA repair protein Ra 93.5 0.19 4.1E-06 58.1 7.7 84 183-269 80-166 (446)
392 cd03243 ABC_MutS_homologs The 93.5 0.04 8.7E-07 56.5 2.0 22 184-205 30-51 (202)
393 TIGR01069 mutS2 MutS2 family p 93.4 0.066 1.4E-06 66.0 4.1 186 183-378 322-522 (771)
394 cd00227 CPT Chloramphenicol (C 93.4 0.063 1.4E-06 53.6 3.3 23 184-206 3-25 (175)
395 PRK13765 ATP-dependent proteas 93.4 0.16 3.5E-06 60.8 7.1 78 156-238 27-106 (637)
396 PRK14721 flhF flagellar biosyn 93.4 0.35 7.5E-06 54.8 9.4 55 183-238 191-250 (420)
397 cd01125 repA Hexameric Replica 93.4 0.35 7.5E-06 51.1 9.1 22 185-206 3-24 (239)
398 TIGR03305 alt_F1F0_F1_bet alte 93.3 0.29 6.4E-06 55.5 8.7 88 184-271 139-244 (449)
399 cd00071 GMPK Guanosine monopho 93.3 0.065 1.4E-06 50.9 3.1 22 185-206 1-22 (137)
400 cd01122 GP4d_helicase GP4d_hel 93.3 0.52 1.1E-05 50.9 10.6 49 184-234 31-81 (271)
401 PRK10416 signal recognition pa 93.3 0.65 1.4E-05 51.0 11.2 24 183-206 114-137 (318)
402 PF07724 AAA_2: AAA domain (Cd 93.3 0.12 2.7E-06 51.0 5.1 41 183-223 3-45 (171)
403 PRK10867 signal recognition pa 93.3 0.32 7E-06 55.4 9.1 24 183-206 100-123 (433)
404 PLN02318 phosphoribulokinase/u 93.3 0.13 2.9E-06 59.6 5.9 33 174-206 56-88 (656)
405 PRK00131 aroK shikimate kinase 93.3 0.069 1.5E-06 53.3 3.4 24 183-206 4-27 (175)
406 PRK10751 molybdopterin-guanine 93.3 0.075 1.6E-06 52.1 3.5 24 183-206 6-29 (173)
407 PRK08149 ATP synthase SpaL; Va 93.3 0.4 8.7E-06 54.3 9.7 87 184-271 152-253 (428)
408 PF07728 AAA_5: AAA domain (dy 93.3 0.17 3.6E-06 48.3 5.9 41 186-229 2-43 (139)
409 cd02021 GntK Gluconate kinase 93.3 0.061 1.3E-06 52.2 2.8 22 185-206 1-22 (150)
410 PRK14529 adenylate kinase; Pro 93.2 0.27 5.8E-06 50.6 7.6 81 186-270 3-87 (223)
411 cd02020 CMPK Cytidine monophos 93.2 0.063 1.4E-06 51.8 2.9 22 185-206 1-22 (147)
412 PRK08927 fliI flagellum-specif 93.2 0.48 1E-05 53.7 10.1 88 183-271 158-260 (442)
413 PRK08972 fliI flagellum-specif 93.2 0.32 7E-06 54.9 8.6 87 184-271 163-264 (444)
414 TIGR00176 mobB molybdopterin-g 93.2 0.11 2.3E-06 50.5 4.2 31 185-215 1-33 (155)
415 COG0467 RAD55 RecA-superfamily 93.2 0.11 2.3E-06 55.8 4.8 49 182-232 22-71 (260)
416 cd01136 ATPase_flagellum-secre 93.2 0.53 1.1E-05 51.4 10.0 86 184-270 70-170 (326)
417 TIGR00416 sms DNA repair prote 93.1 0.28 6.1E-06 56.7 8.4 85 183-270 94-181 (454)
418 COG1126 GlnQ ABC-type polar am 93.1 0.12 2.5E-06 51.5 4.4 34 184-217 29-62 (240)
419 TIGR01040 V-ATPase_V1_B V-type 93.1 0.3 6.6E-06 55.2 8.3 87 184-270 142-258 (466)
420 PRK13947 shikimate kinase; Pro 93.1 0.074 1.6E-06 52.9 3.3 22 185-206 3-24 (171)
421 TIGR03881 KaiC_arch_4 KaiC dom 93.1 0.85 1.8E-05 47.8 11.4 39 183-221 20-59 (229)
422 PRK00889 adenylylsulfate kinas 93.1 0.083 1.8E-06 52.8 3.5 24 183-206 4-27 (175)
423 PRK05922 type III secretion sy 93.0 0.46 1E-05 53.8 9.7 87 184-271 158-259 (434)
424 PTZ00185 ATPase alpha subunit; 93.0 0.59 1.3E-05 53.3 10.3 87 184-270 190-300 (574)
425 PF03308 ArgK: ArgK protein; 93.0 0.099 2.1E-06 54.0 3.9 63 168-230 14-79 (266)
426 COG0465 HflB ATP-dependent Zn 93.0 0.51 1.1E-05 55.3 10.1 50 157-206 150-206 (596)
427 TIGR03498 FliI_clade3 flagella 93.0 0.35 7.5E-06 54.8 8.7 86 184-270 141-241 (418)
428 PF12061 DUF3542: Protein of u 93.0 0.35 7.6E-06 50.4 7.7 88 37-131 310-401 (402)
429 TIGR00390 hslU ATP-dependent p 93.0 0.33 7.1E-06 54.2 8.2 74 162-235 14-104 (441)
430 COG1936 Predicted nucleotide k 93.0 0.074 1.6E-06 50.9 2.8 20 185-204 2-21 (180)
431 cd03287 ABC_MSH3_euk MutS3 hom 93.0 0.061 1.3E-06 55.6 2.4 116 183-303 31-160 (222)
432 TIGR03263 guanyl_kin guanylate 93.0 0.075 1.6E-06 53.4 3.1 23 184-206 2-24 (180)
433 PRK13768 GTPase; Provisional 93.0 0.45 9.8E-06 50.6 9.1 36 183-218 2-38 (253)
434 PF02562 PhoH: PhoH-like prote 93.0 0.16 3.5E-06 51.3 5.3 45 169-217 9-56 (205)
435 PRK12678 transcription termina 93.0 0.36 7.7E-06 55.7 8.5 87 184-270 417-514 (672)
436 COG5238 RNA1 Ran GTPase-activa 92.9 0.13 2.7E-06 52.7 4.4 162 527-694 88-284 (388)
437 PRK14738 gmk guanylate kinase; 92.9 0.091 2E-06 54.0 3.6 27 180-206 10-36 (206)
438 PRK06761 hypothetical protein; 92.9 0.12 2.5E-06 55.1 4.4 23 184-206 4-26 (282)
439 COG3854 SpoIIIAA ncharacterize 92.8 0.22 4.9E-06 49.7 5.9 114 172-299 128-255 (308)
440 COG2019 AdkA Archaeal adenylat 92.8 0.091 2E-06 49.8 3.0 24 183-206 4-27 (189)
441 PRK09435 membrane ATPase/prote 92.8 0.8 1.7E-05 50.3 10.8 38 169-206 42-79 (332)
442 PRK15429 formate hydrogenlyase 92.8 0.24 5.3E-06 61.2 7.7 60 161-220 377-437 (686)
443 PRK10078 ribose 1,5-bisphospho 92.7 0.085 1.8E-06 53.3 3.1 23 184-206 3-25 (186)
444 PRK10463 hydrogenase nickel in 92.7 0.27 5.9E-06 52.4 6.9 29 182-210 103-132 (290)
445 cd01132 F1_ATPase_alpha F1 ATP 92.7 0.65 1.4E-05 49.1 9.6 93 184-277 70-180 (274)
446 PRK07196 fliI flagellum-specif 92.7 0.43 9.2E-06 54.2 8.8 88 183-271 155-257 (434)
447 COG4240 Predicted kinase [Gene 92.7 0.33 7.2E-06 48.4 6.8 54 182-235 49-104 (300)
448 PRK05342 clpX ATP-dependent pr 92.7 0.31 6.8E-06 55.4 7.8 27 184-210 109-136 (412)
449 PRK03846 adenylylsulfate kinas 92.7 0.16 3.5E-06 51.8 5.1 24 183-206 24-47 (198)
450 PRK00300 gmk guanylate kinase; 92.7 0.091 2E-06 54.1 3.3 24 183-206 5-28 (205)
451 cd00820 PEPCK_HprK Phosphoenol 92.7 0.1 2.3E-06 46.4 3.1 22 183-204 15-36 (107)
452 KOG3864 Uncharacterized conser 92.6 0.031 6.8E-07 54.7 -0.2 68 825-894 124-191 (221)
453 PLN02348 phosphoribulokinase 92.6 0.18 3.9E-06 55.8 5.6 26 181-206 47-72 (395)
454 TIGR00959 ffh signal recogniti 92.6 0.62 1.3E-05 53.1 10.0 24 183-206 99-122 (428)
455 PRK11608 pspF phage shock prot 92.6 0.18 3.9E-06 55.8 5.7 59 162-220 8-67 (326)
456 COG1703 ArgK Putative periplas 92.6 0.16 3.4E-06 53.2 4.8 65 169-233 37-104 (323)
457 KOG1532 GTPase XAB1, interacts 92.6 0.11 2.3E-06 53.2 3.4 28 183-210 19-47 (366)
458 PRK00279 adk adenylate kinase; 92.6 0.47 1E-05 49.2 8.4 22 185-206 2-23 (215)
459 PF13504 LRR_7: Leucine rich r 92.6 0.079 1.7E-06 29.7 1.4 16 601-616 2-17 (17)
460 PRK14530 adenylate kinase; Pro 92.5 0.099 2.1E-06 54.2 3.3 23 184-206 4-26 (215)
461 PRK13948 shikimate kinase; Pro 92.5 0.11 2.4E-06 51.8 3.4 24 183-206 10-33 (182)
462 cd00464 SK Shikimate kinase (S 92.5 0.1 2.2E-06 50.9 3.1 21 186-206 2-22 (154)
463 cd03282 ABC_MSH4_euk MutS4 hom 92.5 0.14 2.9E-06 52.4 4.2 116 183-304 29-158 (204)
464 PRK05057 aroK shikimate kinase 92.4 0.11 2.3E-06 51.6 3.3 24 183-206 4-27 (172)
465 COG0703 AroK Shikimate kinase 92.4 0.12 2.6E-06 50.1 3.3 27 184-210 3-30 (172)
466 smart00534 MUTSac ATPase domai 92.4 0.066 1.4E-06 54.0 1.7 22 185-206 1-22 (185)
467 TIGR00073 hypB hydrogenase acc 92.3 0.14 3.1E-06 52.6 4.2 25 182-206 21-45 (207)
468 PF08477 Miro: Miro-like prote 92.3 0.11 2.5E-06 47.8 3.2 21 186-206 2-22 (119)
469 cd01672 TMPK Thymidine monopho 92.3 0.26 5.7E-06 50.3 6.2 22 185-206 2-23 (200)
470 PF03029 ATP_bind_1: Conserved 92.3 0.16 3.4E-06 53.3 4.4 33 188-220 1-34 (238)
471 PRK13975 thymidylate kinase; P 92.3 0.12 2.6E-06 52.8 3.5 23 184-206 3-25 (196)
472 PRK12339 2-phosphoglycerate ki 92.3 0.12 2.7E-06 52.2 3.5 24 183-206 3-26 (197)
473 PRK09280 F0F1 ATP synthase sub 92.2 0.66 1.4E-05 52.9 9.6 88 184-271 145-250 (463)
474 TIGR01039 atpD ATP synthase, F 92.2 0.7 1.5E-05 52.5 9.7 88 184-271 144-249 (461)
475 TIGR00455 apsK adenylylsulfate 92.2 0.63 1.4E-05 46.9 8.7 24 183-206 18-41 (184)
476 PF03266 NTPase_1: NTPase; In 92.2 0.17 3.8E-06 49.7 4.4 21 186-206 2-22 (168)
477 KOG3354 Gluconate kinase [Carb 92.2 0.63 1.4E-05 43.5 7.5 27 184-210 13-40 (191)
478 TIGR01313 therm_gnt_kin carboh 92.2 0.096 2.1E-06 51.6 2.6 21 186-206 1-21 (163)
479 COG0003 ArsA Predicted ATPase 92.2 0.23 5E-06 54.0 5.7 48 183-230 2-50 (322)
480 cd00984 DnaB_C DnaB helicase C 92.2 0.9 2E-05 48.1 10.2 48 184-233 14-63 (242)
481 PRK13946 shikimate kinase; Pro 92.1 0.13 2.8E-06 51.8 3.5 24 183-206 10-33 (184)
482 PRK13695 putative NTPase; Prov 92.1 0.17 3.8E-06 50.4 4.4 32 185-216 2-35 (174)
483 PRK09099 type III secretion sy 92.1 0.6 1.3E-05 53.2 9.0 88 183-271 163-265 (441)
484 cd01878 HflX HflX subfamily. 92.1 0.36 7.8E-06 49.6 6.8 24 183-206 41-64 (204)
485 PRK05201 hslU ATP-dependent pr 92.0 0.37 8E-06 53.9 7.0 74 162-235 17-107 (443)
486 PF00005 ABC_tran: ABC transpo 92.0 0.12 2.6E-06 49.2 2.9 33 184-216 12-44 (137)
487 PRK00698 tmk thymidylate kinas 92.0 0.73 1.6E-05 47.3 9.1 23 184-206 4-26 (205)
488 TIGR03496 FliI_clade1 flagella 92.0 0.65 1.4E-05 52.6 9.2 86 184-270 138-238 (411)
489 PRK06936 type III secretion sy 92.0 0.69 1.5E-05 52.5 9.3 87 183-270 162-263 (439)
490 PRK14737 gmk guanylate kinase; 92.0 0.14 3E-06 51.5 3.4 24 183-206 4-27 (186)
491 TIGR00750 lao LAO/AO transport 92.0 0.22 4.7E-06 54.6 5.3 37 170-206 21-57 (300)
492 PF10236 DAP3: Mitochondrial r 91.9 7.8 0.00017 42.5 17.3 46 308-353 258-305 (309)
493 TIGR00764 lon_rel lon-related 91.9 0.43 9.4E-06 57.4 8.1 71 162-237 20-92 (608)
494 PRK05688 fliI flagellum-specif 91.9 0.65 1.4E-05 52.9 9.0 87 184-271 169-270 (451)
495 KOG0738 AAA+-type ATPase [Post 91.9 0.34 7.4E-06 52.3 6.3 24 183-206 245-268 (491)
496 PLN03046 D-glycerate 3-kinase; 91.8 0.84 1.8E-05 50.9 9.4 41 182-222 211-252 (460)
497 PF00158 Sigma54_activat: Sigm 91.8 0.52 1.1E-05 46.4 7.3 42 165-206 4-45 (168)
498 TIGR01287 nifH nitrogenase iro 91.8 0.17 3.7E-06 54.9 4.2 38 184-222 1-40 (275)
499 PLN02796 D-glycerate 3-kinase 91.8 0.35 7.6E-06 52.8 6.5 25 182-206 99-123 (347)
500 TIGR03880 KaiC_arch_3 KaiC dom 91.8 0.88 1.9E-05 47.5 9.4 46 183-230 16-62 (224)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=2.8e-89 Score=821.22 Aligned_cols=628 Identities=26% Similarity=0.396 Sum_probs=492.7
Q ss_pred HHHhhhhhhhhHHHhhchhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHHHHHHH
Q 001457 18 LSCILERLWNPVERQIIYLVRYGSNIGAFRERARDLEAKKTDVLRFVKDAEDRGEEIKAEVRNWQVQTIQYEMDVELLEE 97 (1074)
Q Consensus 18 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~i~~~l~~a~~~~~~~~~~~~~Wl~~~~~~~~d~ed~~d 97 (1074)
++..++++++.+.+++..+.+.++.+..+++++.. ++.+++||+.++. ....++.|...+++++|++||.++
T Consensus 5 ~s~~~~~~~~~l~~~~~~~~~~~~~i~~Lk~~L~~-------l~~~l~d~~a~~~-~~~~~~~~~e~~~~~~~~~e~~~~ 76 (889)
T KOG4658|consen 5 VSFGVEKLDQLLNRESECLDGKDNYILELKENLKA-------LQSALEDLDAKRD-DLERRVNWEEDVGDLVYLAEDIIW 76 (889)
T ss_pred EEEehhhHHHHHHHHHHHHhchHHHHHHHHHHHHH-------HHHHHHHHHhhcc-hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445666777777888887776655555555544 5556788888875 578889999999999999999877
Q ss_pred Hhhccc------------------Ccccccc-CChhhhhhhcHHHHHHHHHHHHHhhcCCCCcccc-CCCCCCcccCCCC
Q 001457 98 KIQKSE------------------GRCHTWH-LDWRKRHQLSRVATKKTVEIIEHIRLSNFESISF-PARSADVRSIPTP 157 (1074)
Q Consensus 98 ~~~~~~------------------~~~~~~~-~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 157 (1074)
.+.... -|+.+.+ ......+.+++++-++...++.+..+..|..+.. ..+.......|..
T Consensus 77 ~~~v~~~~~~~~~~l~~~~~~~~~~c~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~~~~~e~~~~~ 156 (889)
T KOG4658|consen 77 LFLVEEIERKANDLLSTRSVERQRLCLCGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLDPREKVETRPIQ 156 (889)
T ss_pred HHHHHHHHHHHhHHhhhhHHHHHHHhhhhhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccccccchhhcccCCCC
Confidence 653210 1221211 1233445566677777666666654555555443 2211222233333
Q ss_pred CcccCcchHHHHHHHHHHHhcCCCceeEEEEEcCCCCcHHHHHHHHHhh----cCCCCeEEEEEecCCcCHHHHHHHHHH
Q 001457 158 EFVPLKSALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ----EIPFDKVIFVRVTQTPDVKRVQDEIAR 233 (1074)
Q Consensus 158 ~~~~~~~r~~~~~~l~~~l~~~~~~~~vi~I~G~gG~GKTtLa~~v~~~----~~~F~~~~wv~vs~~~~~~~~~~~i~~ 233 (1074)
.... +|.++.++++.+.|.+++ ..+++|+||||+||||||++++|+ +.+||.++||+||+.++...++.+|++
T Consensus 157 ~~~~-VG~e~~~~kl~~~L~~d~--~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~ 233 (889)
T KOG4658|consen 157 SESD-VGLETMLEKLWNRLMEDD--VGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILE 233 (889)
T ss_pred cccc-ccHHHHHHHHHHHhccCC--CCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHH
Confidence 3322 788999999999999888 599999999999999999999999 789999999999999999999999999
Q ss_pred HhccCCCcch---HHHHHHHHHHHHHccCeEEEEEcCccccccccccccCCCCCCCCeEEEEecCChhHHhh-ccCCCeE
Q 001457 234 FLNTELEGDV---EVLRAAFLSERLKRQKRVLIILDDLWGKLDLAVVGIPYGEEHKGCKIILTSRFKEVCDE-MESTNYV 309 (1074)
Q Consensus 234 ~l~~~~~~~~---~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~~~~~~~~~~~gs~iivTTR~~~v~~~-~~~~~~~ 309 (1074)
.++....... ....+..+.+.|+ +|||+|||||||+..+|+.++.|+|...+||||++|||+++||.. |++...+
T Consensus 234 ~l~~~~~~~~~~~~~~~~~~i~~~L~-~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~ 312 (889)
T KOG4658|consen 234 RLGLLDEEWEDKEEDELASKLLNLLE-GKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPI 312 (889)
T ss_pred HhccCCcccchhhHHHHHHHHHHHhc-cCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccc
Confidence 9887444333 3567778888886 899999999999999999999999999899999999999999988 8888999
Q ss_pred eCCCCCHHHHHHHHHHhcCCC--CCCchhHHHHHHHHHHhCCChHHHHHHHHHHcCC-ChhHHHHHHHHHhhCCCCCCCC
Q 001457 310 QVEELTDEDRLILFKKKAGLP--EGTKAFDRAAEEVVRQCGKLPNAIVIIGTALRHK-PVREWNEAIKRKKASTPINVEG 386 (1074)
Q Consensus 310 ~l~~L~~~~~~~lf~~~a~~~--~~~~~~~~~~~~i~~~c~glPLai~~~~~~l~~~-~~~~w~~~~~~l~~~~~~~~~~ 386 (1074)
++++|+++|||.||+++|+.. ..++.++++|++++++|+|+|||++++|+.|+.| +.++|+++++.+.+....+.++
T Consensus 313 ~v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~ 392 (889)
T KOG4658|consen 313 EVECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSG 392 (889)
T ss_pred cccccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCc
Confidence 999999999999999999833 4456699999999999999999999999999998 6789999999998886666667
Q ss_pred chHHHHHHHHHhhcCChhhHHHHHHhhcCCCCCCccchHHHHHHHhhhcccccccchhhhhhcHHHHHHHHHhccccccC
Q 001457 387 IPEEVVLCVALGYDQLETVAKSCLQFSCLFPPYYSVSMEEFVIHGLVDRLFPQVGLLGEVGNRVHPVVLRLISSSLLLEG 466 (1074)
Q Consensus 387 ~~~~~~~~l~~sy~~L~~~~k~cf~~~s~fp~~~~i~~~~li~~wia~g~i~~~~~~~~~~~~~~~~l~~L~~~~ll~~~ 466 (1074)
+.+.+++++++||++||+++|.||+|||+||+||.|+++.||.+||||||+.+....+.+.+.|+.|+.+|++++|++..
T Consensus 393 ~~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~ 472 (889)
T KOG4658|consen 393 MEESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEE 472 (889)
T ss_pred hhhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhc
Confidence 77999999999999999999999999999999999999999999999999988666677788888999999999999876
Q ss_pred C---CCcceeechhHHHHHHHHHh-----hcCCeeeecCC-cCCCCCc-cccCCCcEEeeccCCcccCCCCCCCCCccEE
Q 001457 467 D---RESCFRIHDDTRKVVKYIAA-----REGDHFIAEPG-MKKGWPR-EDLQNCEKLSLMDGNVTALPDQPKCPRLTTL 536 (1074)
Q Consensus 467 ~---~~~~~~mhdlv~~~~~~~~~-----~~~~~~~~~~~-~~~~~~~-~~~~~~~~L~l~~~~~~~l~~~~~~~~Lr~L 536 (1074)
. ...+|+|||+|||+|.++|+ +++ .++..+ .....|. .++..+|++++.++.+..++....+++|++|
T Consensus 473 ~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~--~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tL 550 (889)
T KOG4658|consen 473 RDEGRKETVKMHDVVREMALWIASDFGKQEEN--QIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTL 550 (889)
T ss_pred ccccceeEEEeeHHHHHHHHHHhccccccccc--eEEECCcCccccccccchhheeEEEEeccchhhccCCCCCCccceE
Confidence 5 34689999999999999998 555 333332 2222332 3367889999999999999988889999999
Q ss_pred EccCCC--CCCCChhHHhcCCCccEEEecCC-ccCCCCCCccCCccCCeeeccCCCCCCCccccCCCCccEEEeeCCCCc
Q 001457 537 FLQNNP--FADIPNAFFEHTREIKNLDLSST-NISSLAPSLPCLEKLRSLHLENTHLNDASLIREFGELEVLILKGSRIV 613 (1074)
Q Consensus 537 ~l~~~~--~~~~~~~~~~~l~~L~~L~l~~~-~~~~lp~~i~~l~~Lr~L~L~~~~l~~~~~i~~l~~L~~L~L~~~~i~ 613 (1074)
.+.+|. +..++..+|..++.|++|||++| .+.++|.+|+.|.|||||+++++ .+.
T Consensus 551 ll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t----------------------~I~ 608 (889)
T KOG4658|consen 551 LLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDT----------------------GIS 608 (889)
T ss_pred EEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCC----------------------Ccc
Confidence 999996 77888888999999999999975 34567777666666666666555 566
Q ss_pred ccCccccCCCCCCEEeCCCCcCCCCcChhhhcCCCCcCEEEccCCcCCccccccccCCCCCccccccCcCCCEEEEe
Q 001457 614 ELPNGIGTVSNLKLLDLSNNLFLQVIPPNVISKLSQLEELYVGNSFGDWEVEETANGQNARFSEVASLTRLTVLYIH 690 (1074)
Q Consensus 614 ~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 690 (1074)
.+|.++++|++|.+|++..+.....+| ++...|++|++|.+.... .........++.++.+|+.+.+.
T Consensus 609 ~LP~~l~~Lk~L~~Lnl~~~~~l~~~~-~i~~~L~~Lr~L~l~~s~--------~~~~~~~l~el~~Le~L~~ls~~ 676 (889)
T KOG4658|consen 609 HLPSGLGNLKKLIYLNLEVTGRLESIP-GILLELQSLRVLRLPRSA--------LSNDKLLLKELENLEHLENLSIT 676 (889)
T ss_pred ccchHHHHHHhhheecccccccccccc-chhhhcccccEEEeeccc--------cccchhhHHhhhcccchhhheee
Confidence 777778888888888877776555553 445668888888775532 11223334455566666666554
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=2.7e-65 Score=651.92 Aligned_cols=691 Identities=20% Similarity=0.273 Sum_probs=411.1
Q ss_pred cccCcchHHHHHHHHHHHhcCCCceeEEEEEcCCCCcHHHHHHHHHhh-cCCCCeEEEEEe---cCC-----------cC
Q 001457 159 FVPLKSALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRV---TQT-----------PD 223 (1074)
Q Consensus 159 ~~~~~~r~~~~~~l~~~l~~~~~~~~vi~I~G~gG~GKTtLa~~v~~~-~~~F~~~~wv~v---s~~-----------~~ 223 (1074)
+.+++|+++.++++..++..+...+++|+||||||+||||||+.+|+. ..+|+..+|+.- +.. ++
T Consensus 183 ~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~~~~~~~~~~~~~~~ 262 (1153)
T PLN03210 183 FEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISKSMEIYSSANPDDYN 262 (1153)
T ss_pred cccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeeccccccchhhcccccccccc
Confidence 344566777788877777655556999999999999999999999999 889999888742 111 01
Q ss_pred -HHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHccCeEEEEEcCccccccccccccCCCCCCCCeEEEEecCChhHHhh
Q 001457 224 -VKRVQDEIARFLNTELEGDVEVLRAAFLSERLKRQKRVLIILDDLWGKLDLAVVGIPYGEEHKGCKIILTSRFKEVCDE 302 (1074)
Q Consensus 224 -~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~~~~~~~~~~~gs~iivTTR~~~v~~~ 302 (1074)
...++++++.++........ .....+++.+. +||+||||||||+..+|+.+.....+.++||+||||||+++++..
T Consensus 263 ~~~~l~~~~l~~il~~~~~~~--~~~~~~~~~L~-~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTTrd~~vl~~ 339 (1153)
T PLN03210 263 MKLHLQRAFLSEILDKKDIKI--YHLGAMEERLK-HRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKDKHFLRA 339 (1153)
T ss_pred hhHHHHHHHHHHHhCCCCccc--CCHHHHHHHHh-CCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEeCcHHHHHh
Confidence 12344444444322211110 11234666775 799999999999999999887766666789999999999999988
Q ss_pred ccCCCeEeCCCCCHHHHHHHHHHhcCCCC-CCchhHHHHHHHHHHhCCChHHHHHHHHHHcCCChhHHHHHHHHHhhCCC
Q 001457 303 MESTNYVQVEELTDEDRLILFKKKAGLPE-GTKAFDRAAEEVVRQCGKLPNAIVIIGTALRHKPVREWNEAIKRKKASTP 381 (1074)
Q Consensus 303 ~~~~~~~~l~~L~~~~~~~lf~~~a~~~~-~~~~~~~~~~~i~~~c~glPLai~~~~~~l~~~~~~~w~~~~~~l~~~~~ 381 (1074)
++..++|+++.+++++||+||+++||... .++.+.+++++|+++|+|+|||++++|++|++++..+|+.++++++...
T Consensus 340 ~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~~~~W~~~l~~L~~~~- 418 (1153)
T PLN03210 340 HGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKEDWMDMLPRLRNGL- 418 (1153)
T ss_pred cCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHhCc-
Confidence 88888999999999999999999999433 4456889999999999999999999999999999999999999987632
Q ss_pred CCCCCchHHHHHHHHHhhcCChh-hHHHHHHhhcCCCCCCccchHHHHHHHhhhcccccccchhhhhhcHHHHHHHHHhc
Q 001457 382 INVEGIPEEVVLCVALGYDQLET-VAKSCLQFSCLFPPYYSVSMEEFVIHGLVDRLFPQVGLLGEVGNRVHPVVLRLISS 460 (1074)
Q Consensus 382 ~~~~~~~~~~~~~l~~sy~~L~~-~~k~cf~~~s~fp~~~~i~~~~li~~wia~g~i~~~~~~~~~~~~~~~~l~~L~~~ 460 (1074)
+.+|.++|++||++|++ ..|.||+++|.|+.+..++ .+..|+|.+.... +..++.|+++
T Consensus 419 ------~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~---~v~~~l~~~~~~~-----------~~~l~~L~~k 478 (1153)
T PLN03210 419 ------DGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVN---DIKLLLANSDLDV-----------NIGLKNLVDK 478 (1153)
T ss_pred ------cHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHH---HHHHHHHhcCCCc-----------hhChHHHHhc
Confidence 36899999999999987 5999999999999876553 4677887764421 1248899999
Q ss_pred cccccCCCCcceeechhHHHHHHHHHhhcCC-----eeeecCCcCCCC--CccccCCCcEEeeccCCcccCCCCCCCCCc
Q 001457 461 SLLLEGDRESCFRIHDDTRKVVKYIAAREGD-----HFIAEPGMKKGW--PREDLQNCEKLSLMDGNVTALPDQPKCPRL 533 (1074)
Q Consensus 461 ~ll~~~~~~~~~~mhdlv~~~~~~~~~~~~~-----~~~~~~~~~~~~--~~~~~~~~~~L~l~~~~~~~l~~~~~~~~L 533 (1074)
||++.. .++++|||++|++|++++.++.. .+.+........ ......+++.+++....+..
T Consensus 479 sLi~~~--~~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~---------- 546 (1153)
T PLN03210 479 SLIHVR--EDIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDE---------- 546 (1153)
T ss_pred CCEEEc--CCeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccce----------
Confidence 999764 35799999999999999976531 011111000000 00001233333332222211
Q ss_pred cEEEccCCCCCCCChhHHhcCCCccEEEecCCccC-------CCCCCccCCc-cCCeeeccCCCCCC-CccccCCCCccE
Q 001457 534 TTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNIS-------SLAPSLPCLE-KLRSLHLENTHLND-ASLIREFGELEV 604 (1074)
Q Consensus 534 r~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-------~lp~~i~~l~-~Lr~L~L~~~~l~~-~~~i~~l~~L~~ 604 (1074)
..+....|.++++|+.|.+..+... .+|..+..++ +||+|++.++.++. |..+ ...+|+.
T Consensus 547 ----------~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~ 615 (1153)
T PLN03210 547 ----------LHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVK 615 (1153)
T ss_pred ----------eeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcE
Confidence 1223344555555555555433211 2344444433 35555555555555 3333 3455556
Q ss_pred EEeeCCCCcccCccccCCCCCCEEeCCCCcCCCCcChhhhcCCCCcCEEEccCCcCCccccccccCCCCCccccccCcCC
Q 001457 605 LILKGSRIVELPNGIGTVSNLKLLDLSNNLFLQVIPPNVISKLSQLEELYVGNSFGDWEVEETANGQNARFSEVASLTRL 684 (1074)
Q Consensus 605 L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L 684 (1074)
|+++++.+..+|.++..+++|+.|++++|..+..+|. ++.+++|++|++++|.... .....++++++|
T Consensus 616 L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~~L~----------~lp~si~~L~~L 683 (1153)
T PLN03210 616 LQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCSSLV----------ELPSSIQYLNKL 683 (1153)
T ss_pred EECcCccccccccccccCCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCCCcc----------ccchhhhccCCC
Confidence 6665555555555555555666666655544445443 4555556666555542211 112234455555
Q ss_pred CEEEEeecC-ccccccCcCCCCCCccEEEEEecCcccCCCccceeEeccchhhhHHHHHHHHhccceeeeccCCCccccc
Q 001457 685 TVLYIHVSN-TKVLSVDFDGPWTNLKRFRVCVNDDYWEIAPKRSMHLKNLSNSIASWVKLLLEKTEYLTLTRSSNLQDIG 763 (1074)
Q Consensus 685 ~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~ 763 (1074)
+.|++++|. ...++... .+ ++|+.|++++|..+..+|
T Consensus 684 ~~L~L~~c~~L~~Lp~~i--~l----------------------------------------~sL~~L~Lsgc~~L~~~p 721 (1153)
T PLN03210 684 EDLDMSRCENLEILPTGI--NL----------------------------------------KSLYRLNLSGCSRLKSFP 721 (1153)
T ss_pred CEEeCCCCCCcCccCCcC--CC----------------------------------------CCCCEEeCCCCCCccccc
Confidence 555555432 11111111 12 333333444443333332
Q ss_pred ccccccCCCccEEEEeccccccccccCcccccccceeEEEeeecccceeeccccccc-ccccCCCcceeecCCccCccee
Q 001457 764 EIDVQGFTGLMCMHLRACSMQRIFHSNFYPTVQILEELHVEYCYSLKEVFCLEDIEG-EQAGLKRLRELVLVGLPKVLTI 842 (1074)
Q Consensus 764 ~l~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~-~~~~~~~L~~L~L~~~~~L~~~ 842 (1074)
.. ..+|+.|+|+++.+.. +|... .+++|.+|.+.++....-+.....+.. ....+++|+.|+|++|+.+..+
T Consensus 722 ~~----~~nL~~L~L~~n~i~~-lP~~~--~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~l 794 (1153)
T PLN03210 722 DI----STNISWLDLDETAIEE-FPSNL--RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVEL 794 (1153)
T ss_pred cc----cCCcCeeecCCCcccc-ccccc--cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCcccc
Confidence 21 2344555555443322 12111 244444444444321111000000000 0011456666666666655554
Q ss_pred eccccccccccccceEEEecCCCccccccchhHhhhcCCCceecccccccceeeccchhhHhhhhhhccccccCC-CCcc
Q 001457 843 WKGNHSVVYLKTLKLMKVKDCGKLRYLFSRTLAEGLGNLEDLSILKCDLMEEIVSVDEAEVEQGAAQERNVSSAP-QPMF 921 (1074)
Q Consensus 843 ~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~l~~l~l~~~~-~~~~ 921 (1074)
+ ..++++++|+.|++++|+++..++.. .++++|+.|++++|..+..++..... ...-.+....+..+| .+..
T Consensus 795 P---~si~~L~~L~~L~Ls~C~~L~~LP~~---~~L~sL~~L~Ls~c~~L~~~p~~~~n-L~~L~Ls~n~i~~iP~si~~ 867 (1153)
T PLN03210 795 P---SSIQNLHKLEHLEIENCINLETLPTG---INLESLESLDLSGCSRLRTFPDISTN-ISDLNLSRTGIEEVPWWIEK 867 (1153)
T ss_pred C---hhhhCCCCCCEEECCCCCCcCeeCCC---CCccccCEEECCCCCccccccccccc-cCEeECCCCCCccChHHHhc
Confidence 4 23455666666666666666655322 14566666666666655544321100 000000111122222 2455
Q ss_pred cCCceEEEecccccccccccccccccccCccEEEEeeccCcceee
Q 001457 922 FPNLKKLLIGKCNKMKRVLSLTNAHNLKQLEELTVASCNHMERII 966 (1074)
Q Consensus 922 ~~~L~~L~l~~C~~L~~~~~~~~~~~l~~L~~L~i~~C~~l~~l~ 966 (1074)
+++|+.|+|.+|++++.++.. ...+++|+.|++++|++++.+.
T Consensus 868 l~~L~~L~L~~C~~L~~l~~~--~~~L~~L~~L~l~~C~~L~~~~ 910 (1153)
T PLN03210 868 FSNLSFLDMNGCNNLQRVSLN--ISKLKHLETVDFSDCGALTEAS 910 (1153)
T ss_pred CCCCCEEECCCCCCcCccCcc--cccccCCCeeecCCCccccccc
Confidence 677777777777777776443 5667777777777777776543
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=2.1e-43 Score=387.70 Aligned_cols=274 Identities=30% Similarity=0.506 Sum_probs=224.6
Q ss_pred hHHHHHHHHHHHhcCCCceeEEEEEcCCCCcHHHHHHHHHhh---cCCCCeEEEEEecCCcCHHHHHHHHHHHhccCCC-
Q 001457 165 ALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ---EIPFDKVIFVRVTQTPDVKRVQDEIARFLNTELE- 240 (1074)
Q Consensus 165 r~~~~~~l~~~l~~~~~~~~vi~I~G~gG~GKTtLa~~v~~~---~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~- 240 (1074)
|+.++++|.+.|.+...+.++|+|+||||+||||||++++++ +.+|+.++|+++++..+...++.+|+.+++....
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 80 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSS 80 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-ST
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccc
Confidence 678999999999885556999999999999999999999988 8999999999999999999999999999987732
Q ss_pred ---cchHHHHHHHHHHHHHccCeEEEEEcCccccccccccccCCCCCCCCeEEEEecCChhHHhhccC-CCeEeCCCCCH
Q 001457 241 ---GDVEVLRAAFLSERLKRQKRVLIILDDLWGKLDLAVVGIPYGEEHKGCKIILTSRFKEVCDEMES-TNYVQVEELTD 316 (1074)
Q Consensus 241 ---~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~~~~~~~~~~~gs~iivTTR~~~v~~~~~~-~~~~~l~~L~~ 316 (1074)
..........+.+.+. ++++||||||||+...|+.+...++....||+||||||+..++..++. ..+|++++|++
T Consensus 81 ~~~~~~~~~~~~~l~~~L~-~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~~ 159 (287)
T PF00931_consen 81 ISDPKDIEELQDQLRELLK-DKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPLSE 159 (287)
T ss_dssp SSCCSSHHHHHHHHHHHHC-CTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS--H
T ss_pred cccccccccccccchhhhc-cccceeeeeeeccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 3344567888888886 689999999999999999998888777789999999999999877665 57899999999
Q ss_pred HHHHHHHHHhcCCCC--CCchhHHHHHHHHHHhCCChHHHHHHHHHHcCC-ChhHHHHHHHHHhhCCCCCCCCchHHHHH
Q 001457 317 EDRLILFKKKAGLPE--GTKAFDRAAEEVVRQCGKLPNAIVIIGTALRHK-PVREWNEAIKRKKASTPINVEGIPEEVVL 393 (1074)
Q Consensus 317 ~~~~~lf~~~a~~~~--~~~~~~~~~~~i~~~c~glPLai~~~~~~l~~~-~~~~w~~~~~~l~~~~~~~~~~~~~~~~~ 393 (1074)
+||++||++.++... ..+.+++.+++|+++|+|+||||+++|++|+.+ +..+|+.+++.+...... ..+....+..
T Consensus 160 ~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~-~~~~~~~~~~ 238 (287)
T PF00931_consen 160 EEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRE-SRDYDRSVFS 238 (287)
T ss_dssp HHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTC-SSGSCHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccc
Confidence 999999999998433 345667899999999999999999999999655 688999999988776532 2223589999
Q ss_pred HHHHhhcCChhhHHHHHHhhcCCCCCCccchHHHHHHHhhhcccccc
Q 001457 394 CVALGYDQLETVAKSCLQFSCLFPPYYSVSMEEFVIHGLVDRLFPQV 440 (1074)
Q Consensus 394 ~l~~sy~~L~~~~k~cf~~~s~fp~~~~i~~~~li~~wia~g~i~~~ 440 (1074)
++.+||+.||+++|.||+|||+||+++.|+++.|+++|+|||||...
T Consensus 239 ~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~ 285 (287)
T PF00931_consen 239 ALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSK 285 (287)
T ss_dssp HHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC--
T ss_pred cceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCccc
Confidence 99999999999999999999999999999999999999999999753
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.97 E-value=2.8e-30 Score=332.12 Aligned_cols=361 Identities=17% Similarity=0.187 Sum_probs=192.8
Q ss_pred cCCCcEEeeccCCcc-cCCCC--CCCCCccEEEccCCCCCCCChhHHhcCCCccEEEecCCccC-CCCCCccCCccCCee
Q 001457 508 LQNCEKLSLMDGNVT-ALPDQ--PKCPRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNIS-SLAPSLPCLEKLRSL 583 (1074)
Q Consensus 508 ~~~~~~L~l~~~~~~-~l~~~--~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~lp~~i~~l~~Lr~L 583 (1074)
+++++.|++++|.+. .+|.. ..+++|+.|++++|.+....+. ..+++|++|++++|.+. .+|..++.+++|++|
T Consensus 92 l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L 169 (968)
T PLN00113 92 LPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVL 169 (968)
T ss_pred CCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEE
Confidence 456666666666654 34432 2556666666666665433221 34566666666666665 445566666666666
Q ss_pred eccCCCCCC--CccccCCCCccEEEeeCCCCc-ccCccccCCCCCCEEeCCCCcCCCCcChhhhcCCCCcCEEEccCCcC
Q 001457 584 HLENTHLND--ASLIREFGELEVLILKGSRIV-ELPNGIGTVSNLKLLDLSNNLFLQVIPPNVISKLSQLEELYVGNSFG 660 (1074)
Q Consensus 584 ~L~~~~l~~--~~~i~~l~~L~~L~L~~~~i~-~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~L~~L~~L~l~~~~~ 660 (1074)
++++|.+.. |..++++++|++|++++|.+. .+|..++++++|++|++++|.+...+|.. ++++++|++|++++|..
T Consensus 170 ~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l 248 (968)
T PLN00113 170 DLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYE-IGGLTSLNHLDLVYNNL 248 (968)
T ss_pred ECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChh-HhcCCCCCEEECcCcee
Confidence 666666543 556666666666666666654 45666666666666666666655555554 66666666666665521
Q ss_pred CccccccccCCCCCccccccCcCCCEEEEeecCccccccCcCCCCCCccEEEEEecCcccC-------CCccceeEeccc
Q 001457 661 DWEVEETANGQNARFSEVASLTRLTVLYIHVSNTKVLSVDFDGPWTNLKRFRVCVNDDYWE-------IAPKRSMHLKNL 733 (1074)
Q Consensus 661 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-------~~~l~~l~l~~~ 733 (1074)
. ......++++++|+.|+++.|......+..+..+++|+.|++..|..... .+.++.+.+.++
T Consensus 249 ~----------~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n 318 (968)
T PLN00113 249 T----------GPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSN 318 (968)
T ss_pred c----------cccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCC
Confidence 1 11223455566666666665554333333334455666666655432211 122333333332
Q ss_pred h--hhhHHHHHHHHhccceeeeccCCCcccccccccccCCCccEEEEeccccccccccCcccccccceeEEEeeecccce
Q 001457 734 S--NSIASWVKLLLEKTEYLTLTRSSNLQDIGEIDVQGFTGLMCMHLRACSMQRIFHSNFYPTVQILEELHVEYCYSLKE 811 (1074)
Q Consensus 734 ~--~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~l~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~ 811 (1074)
. ...|.++.. +++|+.|++.++.-...+|. .+..+++|+.|++++|.+....|.. +..+++|+.|+++++.....
T Consensus 319 ~~~~~~~~~~~~-l~~L~~L~L~~n~l~~~~p~-~l~~~~~L~~L~Ls~n~l~~~~p~~-~~~~~~L~~L~l~~n~l~~~ 395 (968)
T PLN00113 319 NFTGKIPVALTS-LPRLQVLQLWSNKFSGEIPK-NLGKHNNLTVLDLSTNNLTGEIPEG-LCSSGNLFKLILFSNSLEGE 395 (968)
T ss_pred ccCCcCChhHhc-CCCCCEEECcCCCCcCcCCh-HHhCCCCCcEEECCCCeeEeeCChh-HhCcCCCCEEECcCCEeccc
Confidence 2 122333322 36666666666544333332 2344666677777666555444432 33456666666665542211
Q ss_pred eecccccccccccCCCcceeecCCccCcceeeccccccccccccceEEEecCCCccccccchhHhhhcCCCceecccccc
Q 001457 812 VFCLEDIEGEQAGLKRLRELVLVGLPKVLTIWKGNHSVVYLKTLKLMKVKDCGKLRYLFSRTLAEGLGNLEDLSILKCDL 891 (1074)
Q Consensus 812 ~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~ 891 (1074)
.+ .....+++|+.|.+.+|.--..+ +..+..+++|+.|+++++ .+.... +.....+++|+.|++++|..
T Consensus 396 ~p------~~~~~~~~L~~L~L~~n~l~~~~---p~~~~~l~~L~~L~Ls~N-~l~~~~-~~~~~~l~~L~~L~L~~n~~ 464 (968)
T PLN00113 396 IP------KSLGACRSLRRVRLQDNSFSGEL---PSEFTKLPLVYFLDISNN-NLQGRI-NSRKWDMPSLQMLSLARNKF 464 (968)
T ss_pred CC------HHHhCCCCCCEEECcCCEeeeEC---ChhHhcCCCCCEEECcCC-cccCcc-ChhhccCCCCcEEECcCcee
Confidence 11 11123667777777776322222 133456677777777764 344332 22334567777777777665
Q ss_pred ccee
Q 001457 892 MEEI 895 (1074)
Q Consensus 892 l~~i 895 (1074)
...+
T Consensus 465 ~~~~ 468 (968)
T PLN00113 465 FGGL 468 (968)
T ss_pred eeec
Confidence 4433
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.97 E-value=9.9e-30 Score=327.06 Aligned_cols=496 Identities=19% Similarity=0.192 Sum_probs=338.1
Q ss_pred CCCcEEeeccCCcccCCC--CCCCCCccEEEccCCCCC-CCChhHHhcCCCccEEEecCCccCCCCCCccCCccCCeeec
Q 001457 509 QNCEKLSLMDGNVTALPD--QPKCPRLTTLFLQNNPFA-DIPNAFFEHTREIKNLDLSSTNISSLAPSLPCLEKLRSLHL 585 (1074)
Q Consensus 509 ~~~~~L~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~Lr~L~L 585 (1074)
.+++.|++.++.+..... ...+++|++|++++|.+. .+|...|.++++|++|++++|.+....+ .+.+++|++|+|
T Consensus 69 ~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p-~~~l~~L~~L~L 147 (968)
T PLN00113 69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIP-RGSIPNLETLDL 147 (968)
T ss_pred CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccC-ccccCCCCEEEC
Confidence 468889999887754332 367899999999999986 6888888899999999999999874332 256899999999
Q ss_pred cCCCCCC--CccccCCCCccEEEeeCCCCc-ccCccccCCCCCCEEeCCCCcCCCCcChhhhcCCCCcCEEEccCCcCCc
Q 001457 586 ENTHLND--ASLIREFGELEVLILKGSRIV-ELPNGIGTVSNLKLLDLSNNLFLQVIPPNVISKLSQLEELYVGNSFGDW 662 (1074)
Q Consensus 586 ~~~~l~~--~~~i~~l~~L~~L~L~~~~i~-~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~L~~L~~L~l~~~~~~~ 662 (1074)
++|.++. |..++++++|++|++++|.+. .+|..++++++|++|++++|.+...+|.. ++++++|++|++++|...
T Consensus 148 s~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~- 225 (968)
T PLN00113 148 SNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRE-LGQMKSLKWIYLGYNNLS- 225 (968)
T ss_pred cCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChH-HcCcCCccEEECcCCccC-
Confidence 9999975 888999999999999999876 78999999999999999999988788876 999999999999887432
Q ss_pred cccccccCCCCCccccccCcCCCEEEEeecCccccccCcCCCCCCccEEEEEecCcccC-------CCccceeEeccch-
Q 001457 663 EVEETANGQNARFSEVASLTRLTVLYIHVSNTKVLSVDFDGPWTNLKRFRVCVNDDYWE-------IAPKRSMHLKNLS- 734 (1074)
Q Consensus 663 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-------~~~l~~l~l~~~~- 734 (1074)
......++++++|+.|+++.|......+..++.+++|+.|++..|..... ...++.+.+.++.
T Consensus 226 ---------~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l 296 (968)
T PLN00113 226 ---------GEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSL 296 (968)
T ss_pred ---------CcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCee
Confidence 23345678999999999999887655556677889999999987753321 1344555554443
Q ss_pred -hhhHHHHHHHHhccceeeeccCCCcccccccccccCCCccEEEEeccccccccccCcccccccceeEEEeeecccceee
Q 001457 735 -NSIASWVKLLLEKTEYLTLTRSSNLQDIGEIDVQGFTGLMCMHLRACSMQRIFHSNFYPTVQILEELHVEYCYSLKEVF 813 (1074)
Q Consensus 735 -~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~l~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~ 813 (1074)
...|.++.. +++|+.|++.++......+. .+..+++|+.|++++|.+....|. .++.+++|+.|+++++......+
T Consensus 297 ~~~~p~~~~~-l~~L~~L~l~~n~~~~~~~~-~~~~l~~L~~L~L~~n~l~~~~p~-~l~~~~~L~~L~Ls~n~l~~~~p 373 (968)
T PLN00113 297 SGEIPELVIQ-LQNLEILHLFSNNFTGKIPV-ALTSLPRLQVLQLWSNKFSGEIPK-NLGKHNNLTVLDLSTNNLTGEIP 373 (968)
T ss_pred ccCCChhHcC-CCCCcEEECCCCccCCcCCh-hHhcCCCCCEEECcCCCCcCcCCh-HHhCCCCCcEEECCCCeeEeeCC
Confidence 233444332 35666666655443332222 234566666666666655544433 24556666666666653221111
Q ss_pred cccccccccccCCCcceeecCCccCcceeeccccccccccccceEEEecCCCccccccchhHhhhcCCCceecccccccc
Q 001457 814 CLEDIEGEQAGLKRLRELVLVGLPKVLTIWKGNHSVVYLKTLKLMKVKDCGKLRYLFSRTLAEGLGNLEDLSILKCDLME 893 (1074)
Q Consensus 814 ~~~~~~~~~~~~~~L~~L~L~~~~~L~~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~ 893 (1074)
.....+++|+.|.+.++.-...++ ..+..+++|+.|++.+|+ +.... +..+..+++|+.|++++|....
T Consensus 374 ------~~~~~~~~L~~L~l~~n~l~~~~p---~~~~~~~~L~~L~L~~n~-l~~~~-p~~~~~l~~L~~L~Ls~N~l~~ 442 (968)
T PLN00113 374 ------EGLCSSGNLFKLILFSNSLEGEIP---KSLGACRSLRRVRLQDNS-FSGEL-PSEFTKLPLVYFLDISNNNLQG 442 (968)
T ss_pred ------hhHhCcCCCCEEECcCCEecccCC---HHHhCCCCCCEEECcCCE-eeeEC-ChhHhcCCCCCEEECcCCcccC
Confidence 111225667777776663222221 334567788888887754 33322 3445677888888888765443
Q ss_pred eeeccchhhHhhhhhhcccccc------CCCCcccCCceEEEecccccccccccccccccccCccEEEEeeccCcceeec
Q 001457 894 EIVSVDEAEVEQGAAQERNVSS------APQPMFFPNLKKLLIGKCNKMKRVLSLTNAHNLKQLEELTVASCNHMERIIT 967 (1074)
Q Consensus 894 ~i~~~~~~~~~~~~l~~l~l~~------~~~~~~~~~L~~L~l~~C~~L~~~~~~~~~~~l~~L~~L~i~~C~~l~~l~~ 967 (1074)
.++... ...+.++.+.+.+ +|.....++|+.|++++|.....++ ..+.++++|+.|++++|.....+|
T Consensus 443 ~~~~~~---~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~--~~~~~l~~L~~L~Ls~N~l~~~~p- 516 (968)
T PLN00113 443 RINSRK---WDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVP--RKLGSLSELMQLKLSENKLSGEIP- 516 (968)
T ss_pred ccChhh---ccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccC--hhhhhhhccCEEECcCCcceeeCC-
Confidence 322111 1123344444432 2333345678888888776543332 236778888888888886544443
Q ss_pred ccchhhcccCcccccccccccccccccccccccCccccccCCCccEEEEeCCCCCCCCCCCCCCCcccccccccchhhhh
Q 001457 968 VSDEEKAAENKNVLPKLKILALEDLPELDSVYNGEIAALRWPSLEELKVWDCPKLMKLPLDTRSAPKLETFKAHSAWFEK 1047 (1074)
Q Consensus 968 ~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~i~~~~~~~~~~~~L~~L~i~~C~~L~~lp~~~~~l~~L~~l~~~~~~~~~ 1047 (1074)
.....+++|+.|+|++|.-...+|..-. .+++|++|++++|.-...+|..+..+++|+.++++.+-+.+
T Consensus 517 --------~~~~~l~~L~~L~Ls~N~l~~~~p~~~~---~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~ 585 (968)
T PLN00113 517 --------DELSSCKKLVSLDLSHNQLSGQIPASFS---EMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHG 585 (968)
T ss_pred --------hHHcCccCCCEEECCCCcccccCChhHh---CcccCCEEECCCCcccccCChhHhcCcccCEEeccCCccee
Confidence 2456789999999999765445544322 45999999999998777899999999999999886554443
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.87 E-value=4.8e-22 Score=214.09 Aligned_cols=176 Identities=19% Similarity=0.236 Sum_probs=133.6
Q ss_pred CCcEEeeccCCcccCCCC----CCCCCccEEEccCCCCCCCChhHHhcCCCccEEEecCCccCCCCCCccCCccCCeeec
Q 001457 510 NCEKLSLMDGNVTALPDQ----PKCPRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSLAPSLPCLEKLRSLHL 585 (1074)
Q Consensus 510 ~~~~L~l~~~~~~~l~~~----~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~Lr~L~L 585 (1074)
..+.|+.+++.+..+... .-.+..++|++++|.+..+....|.++++|+.+++..|.++.+|.......||+.|+|
T Consensus 53 ~~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L 132 (873)
T KOG4194|consen 53 NTRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDL 132 (873)
T ss_pred CceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEee
Confidence 344556666665554221 2235678899999999999999999999999999999999999988888889999999
Q ss_pred cCCCCCC--CccccCCCCccEEEeeCCCCcccCcc-ccCCCCCCEEeCCCCcCCCCcChhhhcCCCCcCEEEccCCcCCc
Q 001457 586 ENTHLND--ASLIREFGELEVLILKGSRIVELPNG-IGTVSNLKLLDLSNNLFLQVIPPNVISKLSQLEELYVGNSFGDW 662 (1074)
Q Consensus 586 ~~~~l~~--~~~i~~l~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~l~~~~~~~~~p~~~i~~L~~L~~L~l~~~~~~~ 662 (1074)
.+|.|+. .+.+.-++.|++|||+.|.|.++|.. +..-.++++|+|++|.+ ..+..+.|..+.+|-+|.+++|...
T Consensus 133 ~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~I-t~l~~~~F~~lnsL~tlkLsrNrit- 210 (873)
T KOG4194|consen 133 RHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRI-TTLETGHFDSLNSLLTLKLSRNRIT- 210 (873)
T ss_pred eccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccc-cccccccccccchheeeecccCccc-
Confidence 9999988 67788899999999999999988754 55667999999999975 4444455777888888888776321
Q ss_pred cccccccCCCCCccccccCcCCCEEEEeecCccc
Q 001457 663 EVEETANGQNARFSEVASLTRLTVLYIHVSNTKV 696 (1074)
Q Consensus 663 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 696 (1074)
.-....+++|++|+.|++..|.+..
T Consensus 211 ---------tLp~r~Fk~L~~L~~LdLnrN~iri 235 (873)
T KOG4194|consen 211 ---------TLPQRSFKRLPKLESLDLNRNRIRI 235 (873)
T ss_pred ---------ccCHHHhhhcchhhhhhccccceee
Confidence 1222445667777777776655443
No 7
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.86 E-value=7e-21 Score=244.42 Aligned_cols=379 Identities=18% Similarity=0.265 Sum_probs=271.6
Q ss_pred cCCCcEEeeccCCcc-------cCCCC-CCC-CCccEEEccCCCCCCCChhHHhcCCCccEEEecCCccCCCCCCccCCc
Q 001457 508 LQNCEKLSLMDGNVT-------ALPDQ-PKC-PRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSLAPSLPCLE 578 (1074)
Q Consensus 508 ~~~~~~L~l~~~~~~-------~l~~~-~~~-~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~ 578 (1074)
+++++.|.+..+... .+|.. ..+ ++||.|.+.++++..+|..+ .+.+|+.|+++++.+..+|..+..++
T Consensus 557 m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f--~~~~L~~L~L~~s~l~~L~~~~~~l~ 634 (1153)
T PLN03210 557 MRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF--RPENLVKLQMQGSKLEKLWDGVHSLT 634 (1153)
T ss_pred CccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC--CccCCcEEECcCccccccccccccCC
Confidence 677788877544321 23322 222 56999999999999998864 57899999999999999999999999
Q ss_pred cCCeeeccCCC-CCCCccccCCCCccEEEeeCCC-CcccCccccCCCCCCEEeCCCCcCCCCcChhhhcCCCCcCEEEcc
Q 001457 579 KLRSLHLENTH-LNDASLIREFGELEVLILKGSR-IVELPNGIGTVSNLKLLDLSNNLFLQVIPPNVISKLSQLEELYVG 656 (1074)
Q Consensus 579 ~Lr~L~L~~~~-l~~~~~i~~l~~L~~L~L~~~~-i~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~L~~L~~L~l~ 656 (1074)
+|++|+|++|. ++..+.++.+++|++|+|++|. +..+|.+++++++|++|++++|..+..+|.. + ++++|++|+++
T Consensus 635 ~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~-i-~l~sL~~L~Ls 712 (1153)
T PLN03210 635 GLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG-I-NLKSLYRLNLS 712 (1153)
T ss_pred CCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc-C-CCCCCCEEeCC
Confidence 99999999876 5555678999999999999985 7899999999999999999999888999875 3 89999999999
Q ss_pred CCcCCccccccccCCCCCccccccCcCCCEEEEeecCccccccCcCCCCCCccEEEEEecCcccCCCccceeEeccchhh
Q 001457 657 NSFGDWEVEETANGQNARFSEVASLTRLTVLYIHVSNTKVLSVDFDGPWTNLKRFRVCVNDDYWEIAPKRSMHLKNLSNS 736 (1074)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~l~~~~~~ 736 (1074)
+|.....++ ...++|+.|+++.+....+|... .+++|+.|.+..+.... +.+....
T Consensus 713 gc~~L~~~p-------------~~~~nL~~L~L~~n~i~~lP~~~--~l~~L~~L~l~~~~~~~---------l~~~~~~ 768 (1153)
T PLN03210 713 GCSRLKSFP-------------DISTNISWLDLDETAIEEFPSNL--RLENLDELILCEMKSEK---------LWERVQP 768 (1153)
T ss_pred CCCCccccc-------------cccCCcCeeecCCCccccccccc--cccccccccccccchhh---------ccccccc
Confidence 874321111 12467889999988876666543 36778877765432100 0000011
Q ss_pred hHHHHHHHHhccceeeeccCCCcccccccccccCCCccEEEEeccccccccccCcccccccceeEEEeeecccceeeccc
Q 001457 737 IASWVKLLLEKTEYLTLTRSSNLQDIGEIDVQGFTGLMCMHLRACSMQRIFHSNFYPTVQILEELHVEYCYSLKEVFCLE 816 (1074)
Q Consensus 737 ~~~~~~~~~~~L~~L~L~~~~~l~~~~~l~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~ 816 (1074)
.+......+++|+.|++++|..+..+|. .+.++++|+.|++++|......|... .+++|+.|++++|..+..++..
T Consensus 769 l~~~~~~~~~sL~~L~Ls~n~~l~~lP~-si~~L~~L~~L~Ls~C~~L~~LP~~~--~L~sL~~L~Ls~c~~L~~~p~~- 844 (1153)
T PLN03210 769 LTPLMTMLSPSLTRLFLSDIPSLVELPS-SIQNLHKLEHLEIENCINLETLPTGI--NLESLESLDLSGCSRLRTFPDI- 844 (1153)
T ss_pred cchhhhhccccchheeCCCCCCccccCh-hhhCCCCCCEEECCCCCCcCeeCCCC--CccccCEEECCCCCcccccccc-
Confidence 1122223457899999999888777765 46679999999999986555555543 6889999999999877655432
Q ss_pred ccccccccCCCcceeecCCccCcceeeccccccccccccceEEEecCCCccccccchhHhhhcCCCceecccccccceee
Q 001457 817 DIEGEQAGLKRLRELVLVGLPKVLTIWKGNHSVVYLKTLKLMKVKDCGKLRYLFSRTLAEGLGNLEDLSILKCDLMEEIV 896 (1074)
Q Consensus 817 ~~~~~~~~~~~L~~L~L~~~~~L~~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~i~ 896 (1074)
.++|+.|+|.++ .++.++ ..+..+++|+.|++.+|++|+.++. ....+++|+.+++++|..+..++
T Consensus 845 --------~~nL~~L~Ls~n-~i~~iP---~si~~l~~L~~L~L~~C~~L~~l~~--~~~~L~~L~~L~l~~C~~L~~~~ 910 (1153)
T PLN03210 845 --------STNISDLNLSRT-GIEEVP---WWIEKFSNLSFLDMNGCNNLQRVSL--NISKLKHLETVDFSDCGALTEAS 910 (1153)
T ss_pred --------ccccCEeECCCC-CCccCh---HHHhcCCCCCEEECCCCCCcCccCc--ccccccCCCeeecCCCccccccc
Confidence 568999999886 556554 3456789999999999999998743 34678899999999999887653
Q ss_pred ccchhhHhhhhhhccccccCCCCcccCCceEEEeccccccccc
Q 001457 897 SVDEAEVEQGAAQERNVSSAPQPMFFPNLKKLLIGKCNKMKRV 939 (1074)
Q Consensus 897 ~~~~~~~~~~~l~~l~l~~~~~~~~~~~L~~L~l~~C~~L~~~ 939 (1074)
...... . ...+. -.....+|+...+.+.+|.++...
T Consensus 911 l~~~~~-~-----~~~~~-~n~~~~~p~~~~l~f~nC~~L~~~ 946 (1153)
T PLN03210 911 WNGSPS-E-----VAMAT-DNIHSKLPSTVCINFINCFNLDQE 946 (1153)
T ss_pred CCCCch-h-----hhhhc-ccccccCCchhccccccccCCCch
Confidence 221100 0 00000 001124566677788888887654
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.85 E-value=3.7e-24 Score=220.59 Aligned_cols=468 Identities=19% Similarity=0.198 Sum_probs=296.5
Q ss_pred CcEEeeccCCcccCCC-CCCCCCccEEEccCCCCCCCChhHHhcCCCccEEEecCCccCCCCCCccCCccCCeeeccCCC
Q 001457 511 CEKLSLMDGNVTALPD-QPKCPRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSLAPSLPCLEKLRSLHLENTH 589 (1074)
Q Consensus 511 ~~~L~l~~~~~~~l~~-~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~Lr~L~L~~~~ 589 (1074)
+..+.+..|.+..+.. ...+..+.+|.+.+|.+..+|+.+ +.+..+..|+.++|++..+|+.++.+.+|+.|+.++|.
T Consensus 47 l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l~~lp~ai-g~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~ 125 (565)
T KOG0472|consen 47 LQKLILSHNDLEVLREDLKNLACLTVLNVHDNKLSQLPAAI-GELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNE 125 (565)
T ss_pred hhhhhhccCchhhccHhhhcccceeEEEeccchhhhCCHHH-HHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccc
Confidence 4456677777766543 467788999999999988888875 67888888999999999999999999999999999999
Q ss_pred CCC-CccccCCCCccEEEeeCCCCcccCccccCCCCCCEEeCCCCcCCCCcChhhhcCCCCcCEEEccCCcCCccccccc
Q 001457 590 LND-ASLIREFGELEVLILKGSRIVELPNGIGTVSNLKLLDLSNNLFLQVIPPNVISKLSQLEELYVGNSFGDWEVEETA 668 (1074)
Q Consensus 590 l~~-~~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~ 668 (1074)
+.+ +++++.+..|+.|+..+|++..+|.+++++.+|..|++.+|. ...+|++.+. ++.|++|++..|.
T Consensus 126 ~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~-l~~l~~~~i~-m~~L~~ld~~~N~--------- 194 (565)
T KOG0472|consen 126 LKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNK-LKALPENHIA-MKRLKHLDCNSNL--------- 194 (565)
T ss_pred eeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccc-hhhCCHHHHH-HHHHHhcccchhh---------
Confidence 888 899999999999999999999999999999999999999887 4667777444 8999999876653
Q ss_pred cCCCCCccccccCcCCCEEEEeecCccccccCcCCCCCCccEEEEEecCcccCCCccceeEeccchhhhHHHHHHHHhcc
Q 001457 669 NGQNARFSEVASLTRLTVLYIHVSNTKVLSVDFDGPWTNLKRFRVCVNDDYWEIAPKRSMHLKNLSNSIASWVKLLLEKT 748 (1074)
Q Consensus 669 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L 748 (1074)
......+++.+.+|..|++..|.....| .+.+|..|++|++..|.. ..+|..+...++++
T Consensus 195 --L~tlP~~lg~l~~L~~LyL~~Nki~~lP--ef~gcs~L~Elh~g~N~i----------------~~lpae~~~~L~~l 254 (565)
T KOG0472|consen 195 --LETLPPELGGLESLELLYLRRNKIRFLP--EFPGCSLLKELHVGENQI----------------EMLPAEHLKHLNSL 254 (565)
T ss_pred --hhcCChhhcchhhhHHHHhhhcccccCC--CCCccHHHHHHHhcccHH----------------HhhHHHHhcccccc
Confidence 2344567888888888888888877776 456678888887755432 22344444455667
Q ss_pred ceeeeccCCCcccccccccccCCCccEEEEeccccccccccCcccccccceeEEEeeecccceeecccccccccccCCCc
Q 001457 749 EYLTLTRSSNLQDIGEIDVQGFTGLMCMHLRACSMQRIFHSNFYPTVQILEELHVEYCYSLKEVFCLEDIEGEQAGLKRL 828 (1074)
Q Consensus 749 ~~L~L~~~~~l~~~~~l~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L 828 (1074)
..|++.. +.++..|. .+..+.+|.+|++++|.++...+. ++++ +|+.|.+.+++--+--... +..+. -.-|
T Consensus 255 ~vLDLRd-Nklke~Pd-e~clLrsL~rLDlSNN~is~Lp~s--Lgnl-hL~~L~leGNPlrTiRr~i--i~~gT--~~vL 325 (565)
T KOG0472|consen 255 LVLDLRD-NKLKEVPD-EICLLRSLERLDLSNNDISSLPYS--LGNL-HLKFLALEGNPLRTIRREI--ISKGT--QEVL 325 (565)
T ss_pred eeeeccc-cccccCch-HHHHhhhhhhhcccCCccccCCcc--cccc-eeeehhhcCCchHHHHHHH--HcccH--HHHH
Confidence 7777766 34555544 333477888888888877665443 6667 7888888776521100000 00000 0011
Q ss_pred ceeec-CCccCcce-----------eeccccccccccccceEEEecCCCccccccchhHhhh--cCCCceecccccccce
Q 001457 829 RELVL-VGLPKVLT-----------IWKGNHSVVYLKTLKLMKVKDCGKLRYLFSRTLAEGL--GNLEDLSILKCDLMEE 894 (1074)
Q Consensus 829 ~~L~L-~~~~~L~~-----------~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l--~~L~~L~l~~c~~l~~ 894 (1074)
++|.= ..|..+.. ....+.....+.+.+.|++++ .+++.++. .++..- .-....++++. .+.+
T Consensus 326 KyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~-~qlt~VPd-EVfea~~~~~Vt~VnfskN-qL~e 402 (565)
T KOG0472|consen 326 KYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSD-KQLTLVPD-EVFEAAKSEIVTSVNFSKN-QLCE 402 (565)
T ss_pred HHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccc-cccccCCH-HHHHHhhhcceEEEecccc-hHhh
Confidence 11110 00000000 001112223456677777777 56666632 222211 12334445442 2333
Q ss_pred eeccchhhHhhhhhhc----cccccC-C-CCcccCCceEEEecccccccccccccccccccCccEEEEeeccCcceeecc
Q 001457 895 IVSVDEAEVEQGAAQE----RNVSSA-P-QPMFFPNLKKLLIGKCNKMKRVLSLTNAHNLKQLEELTVASCNHMERIITV 968 (1074)
Q Consensus 895 i~~~~~~~~~~~~l~~----l~l~~~-~-~~~~~~~L~~L~l~~C~~L~~~~~~~~~~~l~~L~~L~i~~C~~l~~l~~~ 968 (1074)
+|.--. ......+. .+..+. + .+..+++|..|++++. -+.+++.. +..+..|+.|+|+.. ....+|.
T Consensus 403 lPk~L~--~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN-~Ln~LP~e--~~~lv~Lq~LnlS~N-rFr~lP~- 475 (565)
T KOG0472|consen 403 LPKRLV--ELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNN-LLNDLPEE--MGSLVRLQTLNLSFN-RFRMLPE- 475 (565)
T ss_pred hhhhhH--HHHHHHHHHHhhcCccccchHHHHhhhcceeeecccc-hhhhcchh--hhhhhhhheeccccc-ccccchH-
Confidence 322110 00001111 112222 2 2567899999999764 35666443 678888999999976 3333332
Q ss_pred cchhhcccCcccccccccccccccccccccccCccccccCCCccEEEEeCCCCCCCCCCCCCCCccccccccc
Q 001457 969 SDEEKAAENKNVLPKLKILALEDLPELDSVYNGEIAALRWPSLEELKVWDCPKLMKLPLDTRSAPKLETFKAH 1041 (1074)
Q Consensus 969 ~~~~~~~~~~~~l~~L~~L~l~~c~~L~~i~~~~~~~~~~~~L~~L~i~~C~~L~~lp~~~~~l~~L~~l~~~ 1041 (1074)
....+..|+.+..++ .++.+++..++. .+.+|.+|++.+ ..+..+|.+++++++|++++++
T Consensus 476 --------~~y~lq~lEtllas~-nqi~~vd~~~l~--nm~nL~tLDL~n-Ndlq~IPp~LgnmtnL~hLeL~ 536 (565)
T KOG0472|consen 476 --------CLYELQTLETLLASN-NQIGSVDPSGLK--NMRNLTTLDLQN-NDLQQIPPILGNMTNLRHLELD 536 (565)
T ss_pred --------HHhhHHHHHHHHhcc-ccccccChHHhh--hhhhcceeccCC-CchhhCChhhccccceeEEEec
Confidence 122222334444443 677777776433 457888888866 5688888888888888888764
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.84 E-value=1.8e-22 Score=218.13 Aligned_cols=148 Identities=23% Similarity=0.395 Sum_probs=77.8
Q ss_pred cCCCcEEeeccCCcccCCCC-CCCCCccEEEccCCCCCCCChhHHhcCCCccEEEecCCccC--CCCCCccCCccCCeee
Q 001457 508 LQNCEKLSLMDGNVTALPDQ-PKCPRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNIS--SLAPSLPCLEKLRSLH 584 (1074)
Q Consensus 508 ~~~~~~L~l~~~~~~~l~~~-~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~--~lp~~i~~l~~Lr~L~ 584 (1074)
+.+++.|.+....+..+|+. ..+.+|.+|.+.+|.+..+... ++.++.||.+++.+|++. .+|+.|..+..|..|+
T Consensus 31 Mt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGE-Ls~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lD 109 (1255)
T KOG0444|consen 31 MTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGE-LSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILD 109 (1255)
T ss_pred hhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhh-hccchhhHHHhhhccccccCCCCchhcccccceeee
Confidence 44455555555555555432 3445555555555554444333 244555555555555443 4555555555555555
Q ss_pred ccCCCCCC-CccccCCCCccEEEeeCCCCcccCcc-ccCCCCCCEEeCCCCcCCCCcChhhhcCCCCcCEEEccCC
Q 001457 585 LENTHLND-ASLIREFGELEVLILKGSRIVELPNG-IGTVSNLKLLDLSNNLFLQVIPPNVISKLSQLEELYVGNS 658 (1074)
Q Consensus 585 L~~~~l~~-~~~i~~l~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~l~~~~~~~~~p~~~i~~L~~L~~L~l~~~ 658 (1074)
|++|++++ |..+..-+++-+|+|++|+|..+|.+ +-+|+-|-+||+++|. +..+||. +..|..|++|.+++|
T Consensus 110 LShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~Nr-Le~LPPQ-~RRL~~LqtL~Ls~N 183 (1255)
T KOG0444|consen 110 LSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNR-LEMLPPQ-IRRLSMLQTLKLSNN 183 (1255)
T ss_pred cchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccch-hhhcCHH-HHHHhhhhhhhcCCC
Confidence 55555555 55555555555555555555555544 3355555555555554 4455554 555555555555554
No 10
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.83 E-value=1.6e-21 Score=210.11 Aligned_cols=321 Identities=19% Similarity=0.242 Sum_probs=160.6
Q ss_pred cCCCcEEeeccCCcccCCCCCCC-CCccEEEccCCCCCCCChhHHhcCCCccEEEecCCccCCCCC-CccCCccCCeeec
Q 001457 508 LQNCEKLSLMDGNVTALPDQPKC-PRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSLAP-SLPCLEKLRSLHL 585 (1074)
Q Consensus 508 ~~~~~~L~l~~~~~~~l~~~~~~-~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~Lr~L~L 585 (1074)
+++++.+++..|.+..+|.+... .+|..|+|.+|.+..+....++-++.||+||||.|.|+.+|. ++..=.++++|+|
T Consensus 101 l~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~L 180 (873)
T KOG4194|consen 101 LPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNL 180 (873)
T ss_pred CCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEee
Confidence 45555555555555555554332 346666666666555555555555666666666666665553 4444455666666
Q ss_pred cCCCCCC--CccccCCCCccEEEeeCCCCcccCcc-ccCCCCCCEEeCCCCcCCCCcChhhhcCCCCcCEEEccCCcCCc
Q 001457 586 ENTHLND--ASLIREFGELEVLILKGSRIVELPNG-IGTVSNLKLLDLSNNLFLQVIPPNVISKLSQLEELYVGNSFGDW 662 (1074)
Q Consensus 586 ~~~~l~~--~~~i~~l~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~l~~~~~~~~~p~~~i~~L~~L~~L~l~~~~~~~ 662 (1074)
++|.|+. ...+..+.+|-+|.|++|+++.+|.- +.+|++|+.|+|..|.+ +..-.-.|..|++|+.|.+..|...
T Consensus 181 a~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~i-rive~ltFqgL~Sl~nlklqrN~I~- 258 (873)
T KOG4194|consen 181 ASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRI-RIVEGLTFQGLPSLQNLKLQRNDIS- 258 (873)
T ss_pred ccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccce-eeehhhhhcCchhhhhhhhhhcCcc-
Confidence 6666655 44555555666666666666666543 33466666666655542 2221112455555555555443111
Q ss_pred cccccccCCCCCccccccCcCCCEEEEeecCccccccCcCCCCCCccEEEEEecCcccCCCccceeEeccchhhhHHHHH
Q 001457 663 EVEETANGQNARFSEVASLTRLTVLYIHVSNTKVLSVDFDGPWTNLKRFRVCVNDDYWEIAPKRSMHLKNLSNSIASWVK 742 (1074)
Q Consensus 663 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~l~~~~~~~~~~~~ 742 (1074)
.-.-..+-.+.++++|++..|.........+-+++.|+.|+++.|.
T Consensus 259 ---------kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~Na------------------------- 304 (873)
T KOG4194|consen 259 ---------KLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNA------------------------- 304 (873)
T ss_pred ---------cccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhh-------------------------
Confidence 0111223445555555555555554444444445555555544432
Q ss_pred HHHhccceeeeccCCCcccccccccccCCCccEEEEeccccccccccCcccccccceeEEEeeecccceeeccccccccc
Q 001457 743 LLLEKTEYLTLTRSSNLQDIGEIDVQGFTGLMCMHLRACSMQRIFHSNFYPTVQILEELHVEYCYSLKEVFCLEDIEGEQ 822 (1074)
Q Consensus 743 ~~~~~L~~L~L~~~~~l~~~~~l~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~ 822 (1074)
+..+..-+....+.|+.|+|++|.++.. +...+..+..|+.|.++++. ++.+... .-
T Consensus 305 ----------------I~rih~d~WsftqkL~~LdLs~N~i~~l-~~~sf~~L~~Le~LnLs~Ns-i~~l~e~-----af 361 (873)
T KOG4194|consen 305 ----------------IQRIHIDSWSFTQKLKELDLSSNRITRL-DEGSFRVLSQLEELNLSHNS-IDHLAEG-----AF 361 (873)
T ss_pred ----------------hheeecchhhhcccceeEeccccccccC-ChhHHHHHHHhhhhcccccc-hHHHHhh-----HH
Confidence 1222111222355566666666544443 23334455556666665542 2222100 01
Q ss_pred ccCCCcceeecCCccCcceeeccccccccccccceEEEecCCCccccccchhHhhhcCCCceecccc
Q 001457 823 AGLKRLRELVLVGLPKVLTIWKGNHSVVYLKTLKLMKVKDCGKLRYLFSRTLAEGLGNLEDLSILKC 889 (1074)
Q Consensus 823 ~~~~~L~~L~L~~~~~L~~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c 889 (1074)
.++.+|++|+|+++.---.+..+...+..+++|++|.+.+ ++|+.++ ..-+.++++||+|++.+.
T Consensus 362 ~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~g-Nqlk~I~-krAfsgl~~LE~LdL~~N 426 (873)
T KOG4194|consen 362 VGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTG-NQLKSIP-KRAFSGLEALEHLDLGDN 426 (873)
T ss_pred HHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecC-ceeeecc-hhhhccCcccceecCCCC
Confidence 1256666666665521112222334445566666666666 5666652 233455666666666654
No 11
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.83 E-value=1e-22 Score=231.42 Aligned_cols=460 Identities=22% Similarity=0.246 Sum_probs=269.6
Q ss_pred eeccCCcccCCCC-CCCCCccEEEccCCCCCCCChhHHhcCCCccEEEecCCccCCCCCCccCCccCCeeeccCCCCCC-
Q 001457 515 SLMDGNVTALPDQ-PKCPRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSLAPSLPCLEKLRSLHLENTHLND- 592 (1074)
Q Consensus 515 ~l~~~~~~~l~~~-~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~Lr~L~L~~~~l~~- 592 (1074)
+++.+.++.+|.. .....+..|++..|.+...|-.+..+.-+|++||+++|.+..+|..+..+.+|+.|+++.|.|..
T Consensus 4 d~s~~~l~~ip~~i~~~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~v 83 (1081)
T KOG0618|consen 4 DASDEQLELIPEQILNNEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSV 83 (1081)
T ss_pred ccccccCcccchhhccHHHHHhhhccccccccCchHHhhheeeeEEeeccccccccCCchhhhHHHHhhcccchhhHhhC
Confidence 3444455555543 12223777777777777766666666667888888888888888888888888888888888887
Q ss_pred CccccCCCCccEEEeeCCCCcccCccccCCCCCCEEeCCCCcCCCCcChhhhcCCCCcCEEEccCCcCCccccccc----
Q 001457 593 ASLIREFGELEVLILKGSRIVELPNGIGTVSNLKLLDLSNNLFLQVIPPNVISKLSQLEELYVGNSFGDWEVEETA---- 668 (1074)
Q Consensus 593 ~~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~---- 668 (1074)
|.+++++.+|++|+|.+|.+..+|.++..+++|++|++++|.+ ..+|.- +..+..+..+..++|.....++...
T Consensus 84 p~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N~f-~~~Pl~-i~~lt~~~~~~~s~N~~~~~lg~~~ik~~ 161 (1081)
T KOG0618|consen 84 PSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSFNHF-GPIPLV-IEVLTAEEELAASNNEKIQRLGQTSIKKL 161 (1081)
T ss_pred chhhhhhhcchhheeccchhhcCchhHHhhhcccccccchhcc-CCCchh-HHhhhHHHHHhhhcchhhhhhccccchhh
Confidence 8888888888888888888888888888888888888888875 455543 6777777777766652111111000
Q ss_pred -----cCCCCCccccccCcCCCEEEEeecCccccccCcCCCCCCccEEEEEecCcccCCCccceeEeccchhhhHHHHHH
Q 001457 669 -----NGQNARFSEVASLTRLTVLYIHVSNTKVLSVDFDGPWTNLKRFRVCVNDDYWEIAPKRSMHLKNLSNSIASWVKL 743 (1074)
Q Consensus 669 -----~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~ 743 (1074)
........++..+++ .|++..|..... .+..+.+|+.+....+.. ..+.+
T Consensus 162 ~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~~---dls~~~~l~~l~c~rn~l-------s~l~~------------- 216 (1081)
T KOG0618|consen 162 DLRLNVLGGSFLIDIYNLTH--QLDLRYNEMEVL---DLSNLANLEVLHCERNQL-------SELEI------------- 216 (1081)
T ss_pred hhhhhhcccchhcchhhhhe--eeecccchhhhh---hhhhccchhhhhhhhccc-------ceEEe-------------
Confidence 011112223333333 355555543311 112233333333222210 00000
Q ss_pred HHhccceeeeccCCCcccccccccccCCCccEEEEeccccccccccCcccccccceeEEEeeecccceeecccccccccc
Q 001457 744 LLEKTEYLTLTRSSNLQDIGEIDVQGFTGLMCMHLRACSMQRIFHSNFYPTVQILEELHVEYCYSLKEVFCLEDIEGEQA 823 (1074)
Q Consensus 744 ~~~~L~~L~L~~~~~l~~~~~l~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 823 (1074)
.-++++.|....+...+.... ..-.+|++++++.+.+.... .+...+.+|+.+.+.++.- . .+.....
T Consensus 217 ~g~~l~~L~a~~n~l~~~~~~---p~p~nl~~~dis~n~l~~lp--~wi~~~~nle~l~~n~N~l-~------~lp~ri~ 284 (1081)
T KOG0618|consen 217 SGPSLTALYADHNPLTTLDVH---PVPLNLQYLDISHNNLSNLP--EWIGACANLEALNANHNRL-V------ALPLRIS 284 (1081)
T ss_pred cCcchheeeeccCcceeeccc---cccccceeeecchhhhhcch--HHHHhcccceEecccchhH-H------hhHHHHh
Confidence 114555555555443322211 12457888888888666543 6788888888888877642 1 1122222
Q ss_pred cCCCcceeecCCccCcceeeccccccccccccceEEEecCCCccccccchhHhhhc-CCCceecccccccceeeccchhh
Q 001457 824 GLKRLRELVLVGLPKVLTIWKGNHSVVYLKTLKLMKVKDCGKLRYLFSRTLAEGLG-NLEDLSILKCDLMEEIVSVDEAE 902 (1074)
Q Consensus 824 ~~~~L~~L~L~~~~~L~~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~-~L~~L~l~~c~~l~~i~~~~~~~ 902 (1074)
...+|+.|.+..| .++.++ .....+++|++|++.. ++|.+++. .++.-+. +|+.|+.+. ..+...+....
T Consensus 285 ~~~~L~~l~~~~n-el~yip---~~le~~~sL~tLdL~~-N~L~~lp~-~~l~v~~~~l~~ln~s~-n~l~~lp~~~e-- 355 (1081)
T KOG0618|consen 285 RITSLVSLSAAYN-ELEYIP---PFLEGLKSLRTLDLQS-NNLPSLPD-NFLAVLNASLNTLNVSS-NKLSTLPSYEE-- 355 (1081)
T ss_pred hhhhHHHHHhhhh-hhhhCC---Ccccccceeeeeeehh-ccccccch-HHHhhhhHHHHHHhhhh-ccccccccccc--
Confidence 3677888877776 555554 2334578899999988 77877743 2222222 355555544 33443332221
Q ss_pred Hhhhhhhccccc-------cCCCCcccCCceEEEecccccccccccccccccccCccEEEEeeccCcceeecccchhhcc
Q 001457 903 VEQGAAQERNVS-------SAPQPMFFPNLKKLLIGKCNKMKRVLSLTNAHNLKQLEELTVASCNHMERIITVSDEEKAA 975 (1074)
Q Consensus 903 ~~~~~l~~l~l~-------~~~~~~~~~~L~~L~l~~C~~L~~~~~~~~~~~l~~L~~L~i~~C~~l~~l~~~~~~~~~~ 975 (1074)
.....++.+.+. .+|-+.++.+|+.|+|+++. |..+ +.+.+.+++.|++|+++|. +|+.++.
T Consensus 356 ~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNr-L~~f-pas~~~kle~LeeL~LSGN-kL~~Lp~-------- 424 (1081)
T KOG0618|consen 356 NNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNR-LNSF-PASKLRKLEELEELNLSGN-KLTTLPD-------- 424 (1081)
T ss_pred hhhHHHHHHHHhcCcccccchhhhccccceeeeeecccc-cccC-CHHHHhchHHhHHHhcccc-hhhhhhH--------
Confidence 122334444332 34677899999999998753 4444 5566899999999999995 5666653
Q ss_pred cCcccccccccccccccccccccccCccccccCCCccEEEEeCCCCCCC--CCCCCCCCccccccccc
Q 001457 976 ENKNVLPKLKILALEDLPELDSVYNGEIAALRWPSLEELKVWDCPKLMK--LPLDTRSAPKLETFKAH 1041 (1074)
Q Consensus 976 ~~~~~l~~L~~L~l~~c~~L~~i~~~~~~~~~~~~L~~L~i~~C~~L~~--lp~~~~~l~~L~~l~~~ 1041 (1074)
....++.|++|...+ +.|.++|. ... ++.|+.+++ .|.+|.. +|....+ ++|+.++.+
T Consensus 425 -tva~~~~L~tL~ahs-N~l~~fPe-~~~---l~qL~~lDl-S~N~L~~~~l~~~~p~-p~LkyLdlS 484 (1081)
T KOG0618|consen 425 -TVANLGRLHTLRAHS-NQLLSFPE-LAQ---LPQLKVLDL-SCNNLSEVTLPEALPS-PNLKYLDLS 484 (1081)
T ss_pred -HHHhhhhhHHHhhcC-Cceeechh-hhh---cCcceEEec-ccchhhhhhhhhhCCC-cccceeecc
Confidence 334455555555554 44555552 222 255555555 3555543 3332222 455555544
No 12
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.79 E-value=1.1e-21 Score=212.03 Aligned_cols=323 Identities=20% Similarity=0.249 Sum_probs=239.2
Q ss_pred cCCCcEEeeccCCcccCCC-CCCCCCccEEEccCCCC--CCCChhHHhcCCCccEEEecCCccCCCCCCccCCccCCeee
Q 001457 508 LQNCEKLSLMDGNVTALPD-QPKCPRLTTLFLQNNPF--ADIPNAFFEHTREIKNLDLSSTNISSLAPSLPCLEKLRSLH 584 (1074)
Q Consensus 508 ~~~~~~L~l~~~~~~~l~~-~~~~~~Lr~L~l~~~~~--~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~Lr~L~ 584 (1074)
+++++||++..|.+..+.. ...++.||++++..|.+ +++|+.+| ++.-|.+||||+|++.++|..+..-+++-+|+
T Consensus 54 lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF-~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLN 132 (1255)
T KOG0444|consen 54 LQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIF-RLKDLTILDLSHNQLREVPTNLEYAKNSIVLN 132 (1255)
T ss_pred HhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhc-ccccceeeecchhhhhhcchhhhhhcCcEEEE
Confidence 7889999999998876653 47789999999999985 46888887 69999999999999999999999999999999
Q ss_pred ccCCCCCC-Cccc-cCCCCccEEEeeCCCCcccCccccCCCCCCEEeCCCCcCCCCcChhhhcCCCCcCEEEccCCcCCc
Q 001457 585 LENTHLND-ASLI-REFGELEVLILKGSRIVELPNGIGTVSNLKLLDLSNNLFLQVIPPNVISKLSQLEELYVGNSFGDW 662 (1074)
Q Consensus 585 L~~~~l~~-~~~i-~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~L~~L~~L~l~~~~~~~ 662 (1074)
|++|+|.. |..+ -+|+.|-+|||++|++..+|..+.+|.+|++|++++|+....--.. +..|++|++|.+++..
T Consensus 133 LS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQ-LPsmtsL~vLhms~Tq--- 208 (1255)
T KOG0444|consen 133 LSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQ-LPSMTSLSVLHMSNTQ--- 208 (1255)
T ss_pred cccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhc-Cccchhhhhhhccccc---
Confidence 99999988 6554 4899999999999999999999999999999999999753221112 4556778888877642
Q ss_pred cccccccCCCCCccccccCcCCCEEEEeecCccccccCcCCCCCCccEEEEEecCcccCCCccceeEeccchhhhHHHHH
Q 001457 663 EVEETANGQNARFSEVASLTRLTVLYIHVSNTKVLSVDFDGPWTNLKRFRVCVNDDYWEIAPKRSMHLKNLSNSIASWVK 742 (1074)
Q Consensus 663 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~l~~~~~~~~~~~~ 742 (1074)
.........+..+.+|+.++++.|+....|.-. -.+++|++|+++.|... .+......
T Consensus 209 ------RTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecl-y~l~~LrrLNLS~N~it------------eL~~~~~~--- 266 (1255)
T KOG0444|consen 209 ------RTLDNIPTSLDDLHNLRDVDLSENNLPIVPECL-YKLRNLRRLNLSGNKIT------------ELNMTEGE--- 266 (1255)
T ss_pred ------chhhcCCCchhhhhhhhhccccccCCCcchHHH-hhhhhhheeccCcCcee------------eeeccHHH---
Confidence 223345567888999999999998877665433 35788888888766321 11111112
Q ss_pred HHHhccceeeeccCCCcccccccccccCCCccEEEEeccccccccccCcccccccceeEEEeeecccceeeccccccccc
Q 001457 743 LLLEKTEYLTLTRSSNLQDIGEIDVQGFTGLMCMHLRACSMQRIFHSNFYPTVQILEELHVEYCYSLKEVFCLEDIEGEQ 822 (1074)
Q Consensus 743 ~~~~~L~~L~L~~~~~l~~~~~l~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~ 822 (1074)
-.+|+.|+++. +.++.+|. .+..++.|++|.+.+|.+.-.-.+.-++.+.+|+.+...++. ++- ++++.
T Consensus 267 --W~~lEtLNlSr-NQLt~LP~-avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~-LEl------VPEgl 335 (1255)
T KOG0444|consen 267 --WENLETLNLSR-NQLTVLPD-AVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNK-LEL------VPEGL 335 (1255)
T ss_pred --Hhhhhhhcccc-chhccchH-HHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccc-ccc------Cchhh
Confidence 26788888876 34555555 445688888888888855433333336778888887776652 222 23344
Q ss_pred ccCCCcceeecCCccCcceeeccccccccccccceEEEecCCCccccccc
Q 001457 823 AGLKRLRELVLVGLPKVLTIWKGNHSVVYLKTLKLMKVKDCGKLRYLFSR 872 (1074)
Q Consensus 823 ~~~~~L~~L~L~~~~~L~~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~ 872 (1074)
+.+++|+.|.|..+ .|-.+| ..+..++.|+.|++..-|+|...+-|
T Consensus 336 cRC~kL~kL~L~~N-rLiTLP---eaIHlL~~l~vLDlreNpnLVMPPKP 381 (1255)
T KOG0444|consen 336 CRCVKLQKLKLDHN-RLITLP---EAIHLLPDLKVLDLRENPNLVMPPKP 381 (1255)
T ss_pred hhhHHHHHhccccc-ceeech---hhhhhcCCcceeeccCCcCccCCCCc
Confidence 55888888888765 555554 45567888889998888888765444
No 13
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.75 E-value=2.5e-21 Score=199.91 Aligned_cols=442 Identities=18% Similarity=0.214 Sum_probs=284.7
Q ss_pred cCCCcEEeeccCCcccCCCC-CCCCCccEEEccCCCCCCCChhHHhcCCCccEEEecCCccCCCCCCccCCccCCeeecc
Q 001457 508 LQNCEKLSLMDGNVTALPDQ-PKCPRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSLAPSLPCLEKLRSLHLE 586 (1074)
Q Consensus 508 ~~~~~~L~l~~~~~~~l~~~-~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~Lr~L~L~ 586 (1074)
+..+..+.++.|....+|.. ..+..+..|++++|.+..+|+.. ..+..|+.|++++|.+..+|++++.+..|..|+..
T Consensus 67 L~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i-~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~ 145 (565)
T KOG0472|consen 67 LACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQI-GSLISLVKLDCSSNELKELPDSIGRLLDLEDLDAT 145 (565)
T ss_pred ccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHH-hhhhhhhhhhccccceeecCchHHHHhhhhhhhcc
Confidence 45566778888888777653 56778888899999988888875 56888899999999999999999999999999999
Q ss_pred CCCCCC-CccccCCCCccEEEeeCCCCcccCccccCCCCCCEEeCCCCcCCCCcChhhhcCCCCcCEEEccCCcCCcccc
Q 001457 587 NTHLND-ASLIREFGELEVLILKGSRIVELPNGIGTVSNLKLLDLSNNLFLQVIPPNVISKLSQLEELYVGNSFGDWEVE 665 (1074)
Q Consensus 587 ~~~l~~-~~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~L~~L~~L~l~~~~~~~~~~ 665 (1074)
+|++.. |+.++++..|..|++.++++..+|+..-+++.|++||...|- ++.+|++ ++.|.+|..|++..|..
T Consensus 146 ~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~-L~tlP~~-lg~l~~L~~LyL~~Nki----- 218 (565)
T KOG0472|consen 146 NNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNL-LETLPPE-LGGLESLELLYLRRNKI----- 218 (565)
T ss_pred ccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhh-hhcCChh-hcchhhhHHHHhhhccc-----
Confidence 999888 999999999999999999999998887779999999987774 7888888 89999999998877632
Q ss_pred ccccCCCCCccccccCcCCCEEEEeecCccccccCcCCCCCCccEEEEEecCcccCCCccceeEeccchhhhHHHHHHHH
Q 001457 666 ETANGQNARFSEVASLTRLTVLYIHVSNTKVLSVDFDGPWTNLKRFRVCVNDDYWEIAPKRSMHLKNLSNSIASWVKLLL 745 (1074)
Q Consensus 666 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~ 745 (1074)
..+.++.++..|..|++..|..+.++.+..+.++++..|+++.|.. ...|..+.. +
T Consensus 219 -------~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNkl----------------ke~Pde~cl-L 274 (565)
T KOG0472|consen 219 -------RFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKL----------------KEVPDEICL-L 274 (565)
T ss_pred -------ccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeecccccc----------------ccCchHHHH-h
Confidence 2334678888888888888888888888877888888888876532 233444433 4
Q ss_pred hccceeeeccCCCcccccccccccCCCccEEEEeccccccccc----cCcccccccceeEEEeeecccceee--cccccc
Q 001457 746 EKTEYLTLTRSSNLQDIGEIDVQGFTGLMCMHLRACSMQRIFH----SNFYPTVQILEELHVEYCYSLKEVF--CLEDIE 819 (1074)
Q Consensus 746 ~~L~~L~L~~~~~l~~~~~l~~~~l~~L~~L~L~~~~~~~~~~----~~~~~~l~~L~~L~l~~~~~l~~~~--~~~~~~ 819 (1074)
.+|+.|++++. .++.+|. +++++ .|+.|.+.||.+.++-. .+...-++.|+.= ..|..+..-. .....+
T Consensus 275 rsL~rLDlSNN-~is~Lp~-sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~--~~~dglS~se~~~e~~~t 349 (565)
T KOG0472|consen 275 RSLERLDLSNN-DISSLPY-SLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSK--IKDDGLSQSEGGTETAMT 349 (565)
T ss_pred hhhhhhcccCC-ccccCCc-ccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHh--hccCCCCCCcccccccCC
Confidence 78999999874 3444432 45567 89999999995543211 1111112223220 0111111000 000011
Q ss_pred ccccc------CCCcceeecCCccCcceeeccccccccccccceEEEecCCCcccc----------------------cc
Q 001457 820 GEQAG------LKRLRELVLVGLPKVLTIWKGNHSVVYLKTLKLMKVKDCGKLRYL----------------------FS 871 (1074)
Q Consensus 820 ~~~~~------~~~L~~L~L~~~~~L~~~~~~~~~~~~l~~L~~L~l~~C~~L~~l----------------------~~ 871 (1074)
..... .-+.+.|.+++- .++.+|...+..+.-.-....++++ +++..+ ++
T Consensus 350 ~~~~~~~~~~~~i~tkiL~~s~~-qlt~VPdEVfea~~~~~Vt~Vnfsk-NqL~elPk~L~~lkelvT~l~lsnn~isfv 427 (565)
T KOG0472|consen 350 LPSESFPDIYAIITTKILDVSDK-QLTLVPDEVFEAAKSEIVTSVNFSK-NQLCELPKRLVELKELVTDLVLSNNKISFV 427 (565)
T ss_pred CCCCcccchhhhhhhhhhccccc-ccccCCHHHHHHhhhcceEEEeccc-chHhhhhhhhHHHHHHHHHHHhhcCccccc
Confidence 11112 335566666554 4444443322221111122333333 223222 12
Q ss_pred chhHhhhcCCCceecccccccceeeccchhhHhhhhhhccccccCCCCcccCCceEEEecccccccccccccccccccCc
Q 001457 872 RTLAEGLGNLEDLSILKCDLMEEIVSVDEAEVEQGAAQERNVSSAPQPMFFPNLKKLLIGKCNKMKRVLSLTNAHNLKQL 951 (1074)
Q Consensus 872 ~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~l~~l~l~~~~~~~~~~~L~~L~l~~C~~L~~~~~~~~~~~l~~L 951 (1074)
+..+..+++|..|++++. -+.++|. ..+.+..|+.|+|+.. ....++.. +..+.-|
T Consensus 428 ~~~l~~l~kLt~L~L~NN-~Ln~LP~--------------------e~~~lv~Lq~LnlS~N-rFr~lP~~--~y~lq~l 483 (565)
T KOG0472|consen 428 PLELSQLQKLTFLDLSNN-LLNDLPE--------------------EMGSLVRLQTLNLSFN-RFRMLPEC--LYELQTL 483 (565)
T ss_pred hHHHHhhhcceeeecccc-hhhhcch--------------------hhhhhhhhheeccccc-ccccchHH--HhhHHHH
Confidence 344555666666666652 2333332 2345667999999876 33333211 2222233
Q ss_pred cEEEEeeccCcceeecccchhhcccCcccccccccccccccccccccccCccccccCCCccEEEEeCCCCCCCCCC
Q 001457 952 EELTVASCNHMERIITVSDEEKAAENKNVLPKLKILALEDLPELDSVYNGEIAALRWPSLEELKVWDCPKLMKLPL 1027 (1074)
Q Consensus 952 ~~L~i~~C~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~i~~~~~~~~~~~~L~~L~i~~C~~L~~lp~ 1027 (1074)
+ +.+....++.++.. .+++.+..|.+|++.+ +.++.+|.... ++++|++|.+.|.| .+ .|.
T Consensus 484 E-tllas~nqi~~vd~--------~~l~nm~nL~tLDL~n-Ndlq~IPp~Lg---nmtnL~hLeL~gNp-fr-~Pr 544 (565)
T KOG0472|consen 484 E-TLLASNNQIGSVDP--------SGLKNMRNLTTLDLQN-NDLQQIPPILG---NMTNLRHLELDGNP-FR-QPR 544 (565)
T ss_pred H-HHHhccccccccCh--------HHhhhhhhcceeccCC-CchhhCChhhc---cccceeEEEecCCc-cC-CCH
Confidence 3 33344445555542 3577889999999997 78999998655 55999999999976 43 664
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.73 E-value=3.4e-19 Score=203.10 Aligned_cols=389 Identities=19% Similarity=0.219 Sum_probs=199.7
Q ss_pred CCccEEEccCCCCCCCChhHHhcCCCccEEEecCCccCCCCCCccCCccCCeeeccCCCCCC-CccccCCCCccEEEeeC
Q 001457 531 PRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSLAPSLPCLEKLRSLHLENTHLND-ASLIREFGELEVLILKG 609 (1074)
Q Consensus 531 ~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~Lr~L~L~~~~l~~-~~~i~~l~~L~~L~L~~ 609 (1074)
-+|.+|++++|.+..+|..+ ..+.+|+.|+++.|.|.++|.++.++.+|++|+|.+|.+.. |.++..+++|++|++++
T Consensus 45 v~L~~l~lsnn~~~~fp~~i-t~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~ 123 (1081)
T KOG0618|consen 45 VKLKSLDLSNNQISSFPIQI-TLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSF 123 (1081)
T ss_pred eeeEEeeccccccccCCchh-hhHHHHhhcccchhhHhhCchhhhhhhcchhheeccchhhcCchhHHhhhcccccccch
Confidence 33555666655555555443 34555566666666665555555556666666666555555 55566666666666666
Q ss_pred CCCcccCccccCCCCCCEEeCCCC-------------------cCCCCcChhhhcCCCCcCEEEccCCcCCccccccccC
Q 001457 610 SRIVELPNGIGTVSNLKLLDLSNN-------------------LFLQVIPPNVISKLSQLEELYVGNSFGDWEVEETANG 670 (1074)
Q Consensus 610 ~~i~~lp~~i~~L~~L~~L~l~~~-------------------~~~~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~ 670 (1074)
|.+..+|.-+..+..+..++.++| .....++.+ +..++. .|++..|..
T Consensus 124 N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~-i~~l~~--~ldLr~N~~---------- 190 (1081)
T KOG0618|consen 124 NHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLID-IYNLTH--QLDLRYNEM---------- 190 (1081)
T ss_pred hccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcc-hhhhhe--eeecccchh----------
Confidence 655555554444444444444444 333333332 333333 355544321
Q ss_pred CCCCccccccCcCCCEEEEeecCccccccCcCCCCCCccEEEEEecCcccCC-----CccceeEeccch-hhhHHHHHHH
Q 001457 671 QNARFSEVASLTRLTVLYIHVSNTKVLSVDFDGPWTNLKRFRVCVNDDYWEI-----APKRSMHLKNLS-NSIASWVKLL 744 (1074)
Q Consensus 671 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-----~~l~~l~l~~~~-~~~~~~~~~~ 744 (1074)
....+..+.+|+.+....+....+.. .-++|+.|+...|...... ..++.+.+.... ..+|+|+..+
T Consensus 191 ---~~~dls~~~~l~~l~c~rn~ls~l~~----~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~ 263 (1081)
T KOG0618|consen 191 ---EVLDLSNLANLEVLHCERNQLSELEI----SGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEWIGAC 263 (1081)
T ss_pred ---hhhhhhhccchhhhhhhhcccceEEe----cCcchheeeeccCcceeeccccccccceeeecchhhhhcchHHHHhc
Confidence 12345556666666655544322211 1245555555555332111 123333333332 4567787764
Q ss_pred HhccceeeeccCCCcccccccccccCCCccEEEEeccccccccccCcccccccceeEEEeeec-----------------
Q 001457 745 LEKTEYLTLTRSSNLQDIGEIDVQGFTGLMCMHLRACSMQRIFHSNFYPTVQILEELHVEYCY----------------- 807 (1074)
Q Consensus 745 ~~~L~~L~L~~~~~l~~~~~l~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~----------------- 807 (1074)
.+|+.+......- ..+|. .+....+|+.|.+..|.+....+. ...+.+|++|++..+.
T Consensus 264 -~nle~l~~n~N~l-~~lp~-ri~~~~~L~~l~~~~nel~yip~~--le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~ 338 (1081)
T KOG0618|consen 264 -ANLEALNANHNRL-VALPL-RISRITSLVSLSAAYNELEYIPPF--LEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLN 338 (1081)
T ss_pred -ccceEecccchhH-HhhHH-HHhhhhhHHHHHhhhhhhhhCCCc--ccccceeeeeeehhccccccchHHHhhhhHHHH
Confidence 7777777654322 22211 111233344444444333322221 2233344444443321
Q ss_pred -------ccceeecccccccccccCCCcceeecCCccCcceeeccccccccccccceEEEecCCCccccccchhHhhhcC
Q 001457 808 -------SLKEVFCLEDIEGEQAGLKRLRELVLVGLPKVLTIWKGNHSVVYLKTLKLMKVKDCGKLRYLFSRTLAEGLGN 880 (1074)
Q Consensus 808 -------~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~ 880 (1074)
.++..+..+ ...++.|+.|++.++ .|.+- .+..+.++++|+.|++++ +.|..+ +...+.++..
T Consensus 339 ~ln~s~n~l~~lp~~~-----e~~~~~Lq~LylanN-~Ltd~--c~p~l~~~~hLKVLhLsy-NrL~~f-pas~~~kle~ 408 (1081)
T KOG0618|consen 339 TLNVSSNKLSTLPSYE-----ENNHAALQELYLANN-HLTDS--CFPVLVNFKHLKVLHLSY-NRLNSF-PASKLRKLEE 408 (1081)
T ss_pred HHhhhhcccccccccc-----chhhHHHHHHHHhcC-ccccc--chhhhccccceeeeeecc-cccccC-CHHHHhchHH
Confidence 111111111 123778888888887 34331 224456889999999999 778876 4567789999
Q ss_pred CCceecccccccceeeccchhhHhhhhhhcc-----ccccCCCCcccCCceEEEecccccccccccccccccccCccEEE
Q 001457 881 LEDLSILKCDLMEEIVSVDEAEVEQGAAQER-----NVSSAPQPMFFPNLKKLLIGKCNKMKRVLSLTNAHNLKQLEELT 955 (1074)
Q Consensus 881 L~~L~l~~c~~l~~i~~~~~~~~~~~~l~~l-----~l~~~~~~~~~~~L~~L~l~~C~~L~~~~~~~~~~~l~~L~~L~ 955 (1074)
|++|.++| ++++.++. ..+..+.++.+ .+.+.|.+..++.|+.++++ |++|+.+........ |+|++|+
T Consensus 409 LeeL~LSG-NkL~~Lp~---tva~~~~L~tL~ahsN~l~~fPe~~~l~qL~~lDlS-~N~L~~~~l~~~~p~-p~LkyLd 482 (1081)
T KOG0618|consen 409 LEELNLSG-NKLTTLPD---TVANLGRLHTLRAHSNQLLSFPELAQLPQLKVLDLS-CNNLSEVTLPEALPS-PNLKYLD 482 (1081)
T ss_pred hHHHhccc-chhhhhhH---HHHhhhhhHHHhhcCCceeechhhhhcCcceEEecc-cchhhhhhhhhhCCC-cccceee
Confidence 99999999 45655542 12222322222 34455666667777777774 556655533222221 5677777
Q ss_pred EeeccC
Q 001457 956 VASCNH 961 (1074)
Q Consensus 956 i~~C~~ 961 (1074)
++|...
T Consensus 483 lSGN~~ 488 (1081)
T KOG0618|consen 483 LSGNTR 488 (1081)
T ss_pred ccCCcc
Confidence 776553
No 15
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.54 E-value=1.9e-16 Score=145.00 Aligned_cols=165 Identities=29% Similarity=0.398 Sum_probs=135.4
Q ss_pred ccCCCCCCCCCccEEEccCCCCCCCChhHHhcCCCccEEEecCCccCCCCCCccCCccCCeeeccCCCCCC-CccccCCC
Q 001457 522 TALPDQPKCPRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSLAPSLPCLEKLRSLHLENTHLND-ASLIREFG 600 (1074)
Q Consensus 522 ~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~Lr~L~L~~~~l~~-~~~i~~l~ 600 (1074)
..++....+++++.|.+++|.++.+|+.+ ..+.+|++|++++|++.++|.+++.++.||.|++.-|++.. |..++.++
T Consensus 24 ~~~~gLf~~s~ITrLtLSHNKl~~vppni-a~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p 102 (264)
T KOG0617|consen 24 EELPGLFNMSNITRLTLSHNKLTVVPPNI-AELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFP 102 (264)
T ss_pred hhcccccchhhhhhhhcccCceeecCCcH-HHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCc
Confidence 34444556778888889999888888875 78899999999999999999999999999999999998887 88999999
Q ss_pred CccEEEeeCCCCc--ccCccccCCCCCCEEeCCCCcCCCCcChhhhcCCCCcCEEEccCCcCCccccccccCCCCCcccc
Q 001457 601 ELEVLILKGSRIV--ELPNGIGTVSNLKLLDLSNNLFLQVIPPNVISKLSQLEELYVGNSFGDWEVEETANGQNARFSEV 678 (1074)
Q Consensus 601 ~L~~L~L~~~~i~--~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l 678 (1074)
.|++|||.+|++. .+|..+..+..|+.|++++|.+ +.+|++ ++++++||.|.+..|.. -....++
T Consensus 103 ~levldltynnl~e~~lpgnff~m~tlralyl~dndf-e~lp~d-vg~lt~lqil~lrdndl-----------l~lpkei 169 (264)
T KOG0617|consen 103 ALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDF-EILPPD-VGKLTNLQILSLRDNDL-----------LSLPKEI 169 (264)
T ss_pred hhhhhhccccccccccCCcchhHHHHHHHHHhcCCCc-ccCChh-hhhhcceeEEeeccCch-----------hhCcHHH
Confidence 9999999998776 7888888899999999998874 677877 89999999998877622 2344678
Q ss_pred ccCcCCCEEEEeecCccccccC
Q 001457 679 ASLTRLTVLYIHVSNTKVLSVD 700 (1074)
Q Consensus 679 ~~l~~L~~L~l~~~~~~~~~~~ 700 (1074)
+.+++|+.|++.+|....+|++
T Consensus 170 g~lt~lrelhiqgnrl~vlppe 191 (264)
T KOG0617|consen 170 GDLTRLRELHIQGNRLTVLPPE 191 (264)
T ss_pred HHHHHHHHHhcccceeeecChh
Confidence 8888899998888876666554
No 16
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.42 E-value=4.3e-15 Score=136.18 Aligned_cols=149 Identities=24% Similarity=0.415 Sum_probs=130.2
Q ss_pred cCCCcEEeeccCCcccCCCC-CCCCCccEEEccCCCCCCCChhHHhcCCCccEEEecCCccCCCCCCccCCccCCeeecc
Q 001457 508 LQNCEKLSLMDGNVTALPDQ-PKCPRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSLAPSLPCLEKLRSLHLE 586 (1074)
Q Consensus 508 ~~~~~~L~l~~~~~~~l~~~-~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~Lr~L~L~ 586 (1074)
+.++++|.++.|.+..+|.. ..+.+|++|.+++|.+..+|.++ +.++.||.|++.-|++..+|..|+.++-|++|||+
T Consensus 32 ~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~i-ssl~klr~lnvgmnrl~~lprgfgs~p~levldlt 110 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSI-SSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLT 110 (264)
T ss_pred hhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhh-hhchhhhheecchhhhhcCccccCCCchhhhhhcc
Confidence 56778888888988877654 67889999999999999998874 78999999999999999999999999999999999
Q ss_pred CCCCCC---CccccCCCCccEEEeeCCCCcccCccccCCCCCCEEeCCCCcCCCCcChhhhcCCCCcCEEEccCCc
Q 001457 587 NTHLND---ASLIREFGELEVLILKGSRIVELPNGIGTVSNLKLLDLSNNLFLQVIPPNVISKLSQLEELYVGNSF 659 (1074)
Q Consensus 587 ~~~l~~---~~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~L~~L~~L~l~~~~ 659 (1074)
+|++.+ |..+..++.|+.|+|+.|.+..+|..+++|++||.|.++.|. +-.+|.+ ++.++.|++|++.+|.
T Consensus 111 ynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdnd-ll~lpke-ig~lt~lrelhiqgnr 184 (264)
T KOG0617|consen 111 YNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDND-LLSLPKE-IGDLTRLRELHIQGNR 184 (264)
T ss_pred ccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCc-hhhCcHH-HHHHHHHHHHhcccce
Confidence 999877 888888899999999999999999999999999999999987 4567877 8999999999988874
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.41 E-value=3.3e-12 Score=152.14 Aligned_cols=128 Identities=26% Similarity=0.364 Sum_probs=83.9
Q ss_pred cEEeeccCCcccCCCCCCCCCccEEEccCCCCCCCChhHHhcCCCccEEEecCCccCCCCCCccCCccCCeeeccCCCCC
Q 001457 512 EKLSLMDGNVTALPDQPKCPRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSLAPSLPCLEKLRSLHLENTHLN 591 (1074)
Q Consensus 512 ~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~Lr~L~L~~~~l~ 591 (1074)
..|+++++.+..+|... .++|+.|.+.+|.++.+|. ..++|++|++++|.++.+|.. .++|+.|++++|.++
T Consensus 204 ~~LdLs~~~LtsLP~~l-~~~L~~L~L~~N~Lt~LP~----lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~L~ 275 (788)
T PRK15387 204 AVLNVGESGLTTLPDCL-PAHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNPLT 275 (788)
T ss_pred cEEEcCCCCCCcCCcch-hcCCCEEEccCCcCCCCCC----CCCCCcEEEecCCccCcccCc---ccccceeeccCCchh
Confidence 35667777776666532 2467778888777777764 256778888888877777653 356777788877776
Q ss_pred C-CccccCCCCccEEEeeCCCCcccCccccCCCCCCEEeCCCCcCCCCcChhhhcCCCCcCEEEccCC
Q 001457 592 D-ASLIREFGELEVLILKGSRIVELPNGIGTVSNLKLLDLSNNLFLQVIPPNVISKLSQLEELYVGNS 658 (1074)
Q Consensus 592 ~-~~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~L~~L~~L~l~~~ 658 (1074)
. |.. ..+|+.|++++|+++.+|.. +++|+.|++++|.+ ..+|.. ..+|+.|++++|
T Consensus 276 ~Lp~l---p~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~L-~~Lp~l----p~~L~~L~Ls~N 332 (788)
T PRK15387 276 HLPAL---PSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQL-ASLPAL----PSELCKLWAYNN 332 (788)
T ss_pred hhhhc---hhhcCEEECcCCcccccccc---ccccceeECCCCcc-ccCCCC----cccccccccccC
Confidence 6 332 24577778888877777763 46778888877764 344431 234556666655
No 18
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.32 E-value=2.5e-11 Score=144.72 Aligned_cols=178 Identities=23% Similarity=0.215 Sum_probs=125.1
Q ss_pred CCCCccccCCCcEEeeccCCcccCCCCCCCCCccEEEccCCCCCCCChhHHhcCCCccEEEecCCccCCCCCCccCCccC
Q 001457 501 KGWPREDLQNCEKLSLMDGNVTALPDQPKCPRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSLAPSLPCLEKL 580 (1074)
Q Consensus 501 ~~~~~~~~~~~~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L 580 (1074)
..+|..-..+++.|++.+|.+..+|. .+++|++|++++|.++.+|.. .++|+.|++++|.+..+|... .+|
T Consensus 214 tsLP~~l~~~L~~L~L~~N~Lt~LP~--lp~~Lk~LdLs~N~LtsLP~l----p~sL~~L~Ls~N~L~~Lp~lp---~~L 284 (788)
T PRK15387 214 TTLPDCLPAHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTSLPVL----PPGLLELSIFSNPLTHLPALP---SGL 284 (788)
T ss_pred CcCCcchhcCCCEEEccCCcCCCCCC--CCCCCcEEEecCCccCcccCc----ccccceeeccCCchhhhhhch---hhc
Confidence 34443334678999999999988886 368999999999999888752 468899999999998887643 568
Q ss_pred CeeeccCCCCCC-CccccCCCCccEEEeeCCCCcccCccccCCCCCCEEeCCCCcCCCCcChhhhcCCCCcCEEEccCCc
Q 001457 581 RSLHLENTHLND-ASLIREFGELEVLILKGSRIVELPNGIGTVSNLKLLDLSNNLFLQVIPPNVISKLSQLEELYVGNSF 659 (1074)
Q Consensus 581 r~L~L~~~~l~~-~~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~L~~L~~L~l~~~~ 659 (1074)
+.|++++|.++. |. .+++|+.|++++|.+..+|... .+|+.|++++|.+ ..+|. + ..+|++|++++|.
T Consensus 285 ~~L~Ls~N~Lt~LP~---~p~~L~~LdLS~N~L~~Lp~lp---~~L~~L~Ls~N~L-~~LP~--l--p~~Lq~LdLS~N~ 353 (788)
T PRK15387 285 CKLWIFGNQLTSLPV---LPPGLQELSVSDNQLASLPALP---SELCKLWAYNNQL-TSLPT--L--PSGLQELSVSDNQ 353 (788)
T ss_pred CEEECcCCccccccc---cccccceeECCCCccccCCCCc---ccccccccccCcc-ccccc--c--ccccceEecCCCc
Confidence 889999999888 54 2468999999999998888633 4577888888874 45664 1 2578899988873
Q ss_pred CCccccccccCCCCCccccccCcCCCEEEEeecCccccccCcCCCCCCccEEEEEec
Q 001457 660 GDWEVEETANGQNARFSEVASLTRLTVLYIHVSNTKVLSVDFDGPWTNLKRFRVCVN 716 (1074)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 716 (1074)
... ++ . ...+|+.|.++.|....++.. ..+|+.|++..|
T Consensus 354 Ls~-LP-----------~--lp~~L~~L~Ls~N~L~~LP~l----~~~L~~LdLs~N 392 (788)
T PRK15387 354 LAS-LP-----------T--LPSELYKLWAYNNRLTSLPAL----PSGLKELIVSGN 392 (788)
T ss_pred cCC-CC-----------C--CCcccceehhhccccccCccc----ccccceEEecCC
Confidence 321 11 0 123566677776665544321 245666666554
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.32 E-value=4.4e-12 Score=152.29 Aligned_cols=134 Identities=24% Similarity=0.409 Sum_probs=81.9
Q ss_pred CcEEeeccCCcccCCCCCCCCCccEEEccCCCCCCCChhHHhcCCCccEEEecCCccCCCCCCccCCccCCeeeccCCCC
Q 001457 511 CEKLSLMDGNVTALPDQPKCPRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSLAPSLPCLEKLRSLHLENTHL 590 (1074)
Q Consensus 511 ~~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~Lr~L~L~~~~l 590 (1074)
...|.+.++.+..+|.. -.++++.|++++|.++.+|...+ .+|+.|++++|.++.+|..+. .+|+.|+|++|.+
T Consensus 180 ~~~L~L~~~~LtsLP~~-Ip~~L~~L~Ls~N~LtsLP~~l~---~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L 253 (754)
T PRK15370 180 KTELRLKILGLTTIPAC-IPEQITTLILDNNELKSLPENLQ---GNIKTLYANSNQLTSIPATLP--DTIQEMELSINRI 253 (754)
T ss_pred ceEEEeCCCCcCcCCcc-cccCCcEEEecCCCCCcCChhhc---cCCCEEECCCCccccCChhhh--ccccEEECcCCcc
Confidence 34566666666666542 12467777777777776666543 367777777777776666543 3577777777776
Q ss_pred CC-CccccCCCCccEEEeeCCCCcccCccccCCCCCCEEeCCCCcCCCCcChhhhcCCCCcCEEEccCC
Q 001457 591 ND-ASLIREFGELEVLILKGSRIVELPNGIGTVSNLKLLDLSNNLFLQVIPPNVISKLSQLEELYVGNS 658 (1074)
Q Consensus 591 ~~-~~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~L~~L~~L~l~~~ 658 (1074)
.. |..+. .+|++|++++|+++.+|..+. .+|++|++++|.+ ..+|.. +. ++|+.|++++|
T Consensus 254 ~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~L-t~LP~~-lp--~sL~~L~Ls~N 314 (754)
T PRK15370 254 TELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNSI-RTLPAH-LP--SGITHLNVQSN 314 (754)
T ss_pred CcCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCCcc-ccCccc-ch--hhHHHHHhcCC
Confidence 66 54443 367777777777777766553 4677777777653 345543 21 35666666554
No 20
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.30 E-value=1.5e-12 Score=158.78 Aligned_cols=125 Identities=26% Similarity=0.359 Sum_probs=84.8
Q ss_pred CCCccEEEecCCccCCCCCCccCCccCCeeeccCCC--CCC--CccccCCCCccEEEeeCC-CCcccCccccCCCCCCEE
Q 001457 554 TREIKNLDLSSTNISSLAPSLPCLEKLRSLHLENTH--LND--ASLIREFGELEVLILKGS-RIVELPNGIGTVSNLKLL 628 (1074)
Q Consensus 554 l~~L~~L~l~~~~~~~lp~~i~~l~~Lr~L~L~~~~--l~~--~~~i~~l~~L~~L~L~~~-~i~~lp~~i~~L~~L~~L 628 (1074)
....|...+.++.+..++.+.. ++.|++|-+.+|. +.. ...+..++.|++|||++| .+.+||.+|+.|-+||+|
T Consensus 522 ~~~~rr~s~~~~~~~~~~~~~~-~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL 600 (889)
T KOG4658|consen 522 WNSVRRMSLMNNKIEHIAGSSE-NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYL 600 (889)
T ss_pred hhheeEEEEeccchhhccCCCC-CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcc
Confidence 3445555555555555544432 2356666666664 333 333666788888888877 488999999999999999
Q ss_pred eCCCCcCCCCcChhhhcCCCCcCEEEccCCcCCccccccccCCCCCccccccCcCCCEEEEee
Q 001457 629 DLSNNLFLQVIPPNVISKLSQLEELYVGNSFGDWEVEETANGQNARFSEVASLTRLTVLYIHV 691 (1074)
Q Consensus 629 ~l~~~~~~~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 691 (1074)
+++++. ...+|.+ +++|+.|.+|++..+.....+ ...+..+.+|++|.+..
T Consensus 601 ~L~~t~-I~~LP~~-l~~Lk~L~~Lnl~~~~~l~~~----------~~i~~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 601 DLSDTG-ISHLPSG-LGNLKKLIYLNLEVTGRLESI----------PGILLELQSLRVLRLPR 651 (889)
T ss_pred cccCCC-ccccchH-HHHHHhhheeccccccccccc----------cchhhhcccccEEEeec
Confidence 999998 5688988 999999999998765321111 12233477777777654
No 21
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.27 E-value=5.6e-10 Score=143.62 Aligned_cols=273 Identities=13% Similarity=0.180 Sum_probs=169.4
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHhhcCCCCeEEEEEecC-CcCHHHHHHHHHHHhccCCCc--------------chHHH
Q 001457 182 SINIIGVYGSGGIGKTTLMKQVMKQEIPFDKVIFVRVTQ-TPDVKRVQDEIARFLNTELEG--------------DVEVL 246 (1074)
Q Consensus 182 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~~--------------~~~~~ 246 (1074)
..+++.|+|++|.||||++...... ++.++|+++.. ..+...+...++..++..... .....
T Consensus 31 ~~~~~~v~apaG~GKTtl~~~~~~~---~~~~~w~~l~~~d~~~~~f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (903)
T PRK04841 31 NYRLVLVTSPAGYGKTTLISQWAAG---KNNLGWYSLDESDNQPERFASYLIAALQQATNGHCSKSEALAQKRQYASLSS 107 (903)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHh---CCCeEEEecCcccCCHHHHHHHHHHHHHHhcCcccchhhhhhccCCcCCHHH
Confidence 3789999999999999999998764 23689999964 445566666666666421111 01112
Q ss_pred HHHHHHHHHHc-cCeEEEEEcCcccccc--c-cccccCCCCCCCCeEEEEecCChhHH--hhc-cCCCeEeCC----CCC
Q 001457 247 RAAFLSERLKR-QKRVLIILDDLWGKLD--L-AVVGIPYGEEHKGCKIILTSRFKEVC--DEM-ESTNYVQVE----ELT 315 (1074)
Q Consensus 247 ~~~~l~~~l~~-~k~~LlVlDdv~~~~~--~-~~~~~~~~~~~~gs~iivTTR~~~v~--~~~-~~~~~~~l~----~L~ 315 (1074)
....+...+.. +.+++|||||+...++ . +.+..-+.....+.++|||||...-. ... ......++. +|+
T Consensus 108 ~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~ 187 (903)
T PRK04841 108 LFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLPPLGIANLRVRDQLLEIGSQQLAFD 187 (903)
T ss_pred HHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCCCCchHhHHhcCcceecCHHhCCCC
Confidence 22333333332 6899999999865421 1 12211112233467899999974211 111 112345555 999
Q ss_pred HHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhCCChHHHHHHHHHHcCCChhHHHHHHHHHhhCCCCCCCCc-hHHHHHH
Q 001457 316 DEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLPNAIVIIGTALRHKPVREWNEAIKRKKASTPINVEGI-PEEVVLC 394 (1074)
Q Consensus 316 ~~~~~~lf~~~a~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~l~~~~~~~w~~~~~~l~~~~~~~~~~~-~~~~~~~ 394 (1074)
.+|+.++|....+.. --.+...+|.+.|+|.|+++..++..++..+.. -......+ .+. ...+...
T Consensus 188 ~~e~~~ll~~~~~~~----~~~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~-~~~~~~~~--------~~~~~~~~~~~ 254 (903)
T PRK04841 188 HQEAQQFFDQRLSSP----IEAAESSRLCDDVEGWATALQLIALSARQNNSS-LHDSARRL--------AGINASHLSDY 254 (903)
T ss_pred HHHHHHHHHhccCCC----CCHHHHHHHHHHhCChHHHHHHHHHHHhhCCCc-hhhhhHhh--------cCCCchhHHHH
Confidence 999999998876522 234557789999999999999998877543210 01111111 010 1334444
Q ss_pred HH-HhhcCChhhHHHHHHhhcCCCCCCccchHHHHHHHhhhcccccccchhhhhhcHHHHHHHHHhccccc-cCC-CCcc
Q 001457 395 VA-LGYDQLETVAKSCLQFSCLFPPYYSVSMEEFVIHGLVDRLFPQVGLLGEVGNRVHPVVLRLISSSLLL-EGD-RESC 471 (1074)
Q Consensus 395 l~-~sy~~L~~~~k~cf~~~s~fp~~~~i~~~~li~~wia~g~i~~~~~~~~~~~~~~~~l~~L~~~~ll~-~~~-~~~~ 471 (1074)
+. -.|+.||++.+..+...|+++. ++.+ +.. .+... ..+...+++|.+.+++. ..+ ....
T Consensus 255 l~~~v~~~l~~~~~~~l~~~a~~~~---~~~~-l~~-----~l~~~--------~~~~~~L~~l~~~~l~~~~~~~~~~~ 317 (903)
T PRK04841 255 LVEEVLDNVDLETRHFLLRCSVLRS---MNDA-LIV-----RVTGE--------ENGQMRLEELERQGLFIQRMDDSGEW 317 (903)
T ss_pred HHHHHHhcCCHHHHHHHHHhccccc---CCHH-HHH-----HHcCC--------CcHHHHHHHHHHCCCeeEeecCCCCE
Confidence 33 3478999999999999999973 3322 221 11111 12246799999999864 333 3347
Q ss_pred eeechhHHHHHHHHHh
Q 001457 472 FRIHDDTRKVVKYIAA 487 (1074)
Q Consensus 472 ~~mhdlv~~~~~~~~~ 487 (1074)
|+.|++++++++....
T Consensus 318 yr~H~L~r~~l~~~l~ 333 (903)
T PRK04841 318 FRYHPLFASFLRHRCQ 333 (903)
T ss_pred EehhHHHHHHHHHHHH
Confidence 9999999999988753
No 22
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.25 E-value=4e-11 Score=144.14 Aligned_cols=186 Identities=22% Similarity=0.321 Sum_probs=139.7
Q ss_pred CCCccccCCCcEEeeccCCcccCCCCCCCCCccEEEccCCCCCCCChhHHhcCCCccEEEecCCccCCCCCCccCCccCC
Q 001457 502 GWPREDLQNCEKLSLMDGNVTALPDQPKCPRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSLAPSLPCLEKLR 581 (1074)
Q Consensus 502 ~~~~~~~~~~~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~Lr 581 (1074)
.+|..-.++++.|++.+|.+..+|.. ..++|+.|++++|.++.+|..+. ..|+.|++++|.+..+|..+. .+|+
T Consensus 192 sLP~~Ip~~L~~L~Ls~N~LtsLP~~-l~~nL~~L~Ls~N~LtsLP~~l~---~~L~~L~Ls~N~L~~LP~~l~--s~L~ 265 (754)
T PRK15370 192 TIPACIPEQITTLILDNNELKSLPEN-LQGNIKTLYANSNQLTSIPATLP---DTIQEMELSINRITELPERLP--SALQ 265 (754)
T ss_pred cCCcccccCCcEEEecCCCCCcCChh-hccCCCEEECCCCccccCChhhh---ccccEEECcCCccCcCChhHh--CCCC
Confidence 34432246789999999999988864 34699999999999999887543 479999999999999998765 5899
Q ss_pred eeeccCCCCCC-CccccCCCCccEEEeeCCCCcccCccccCCCCCCEEeCCCCcCCCCcChhhhcCCCCcCEEEccCCcC
Q 001457 582 SLHLENTHLND-ASLIREFGELEVLILKGSRIVELPNGIGTVSNLKLLDLSNNLFLQVIPPNVISKLSQLEELYVGNSFG 660 (1074)
Q Consensus 582 ~L~L~~~~l~~-~~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~L~~L~~L~l~~~~~ 660 (1074)
+|++++|.++. |..+. .+|++|++++|+++.+|..+. .+|++|++++|.+ ..+|.. + .++|++|++++|..
T Consensus 266 ~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N~L-t~LP~~-l--~~sL~~L~Ls~N~L 337 (754)
T PRK15370 266 SLDLFHNKISCLPENLP--EELRYLSVYDNSIRTLPAHLP--SGITHLNVQSNSL-TALPET-L--PPGLKTLEAGENAL 337 (754)
T ss_pred EEECcCCccCccccccC--CCCcEEECCCCccccCcccch--hhHHHHHhcCCcc-ccCCcc-c--cccceeccccCCcc
Confidence 99999999988 66554 589999999999999997654 4899999999975 456654 2 36889999888732
Q ss_pred CccccccccCCCCCccccccCcCCCEEEEeecCccccccCcCCCCCCccEEEEEecC
Q 001457 661 DWEVEETANGQNARFSEVASLTRLTVLYIHVSNTKVLSVDFDGPWTNLKRFRVCVND 717 (1074)
Q Consensus 661 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 717 (1074)
.. ++ ..+ .++|+.|+++.|....++..+ .++|+.|++.+|.
T Consensus 338 t~-LP----------~~l--~~sL~~L~Ls~N~L~~LP~~l---p~~L~~LdLs~N~ 378 (754)
T PRK15370 338 TS-LP----------ASL--PPELQVLDVSKNQITVLPETL---PPTITTLDVSRNA 378 (754)
T ss_pred cc-CC----------hhh--cCcccEEECCCCCCCcCChhh---cCCcCEEECCCCc
Confidence 11 11 112 257888999888766555432 2467777766553
No 23
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.16 E-value=5.7e-09 Score=113.30 Aligned_cols=176 Identities=19% Similarity=0.212 Sum_probs=114.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhh-c-CCCCeEEEEEecCCcCHHHHHHHHHHHhccCCCcchHHHHHHHHH----HHHH
Q 001457 183 INIIGVYGSGGIGKTTLMKQVMKQ-E-IPFDKVIFVRVTQTPDVKRVQDEIARFLNTELEGDVEVLRAAFLS----ERLK 256 (1074)
Q Consensus 183 ~~vi~I~G~gG~GKTtLa~~v~~~-~-~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~----~~l~ 256 (1074)
.+++.|+|++|+||||+++.+++. . ..+ ..+|+ +....+..+++..|+..++..............+. ....
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~ 120 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQERV-VAAKL-VNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFA 120 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCCCCe-EEeee-eCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHh
Confidence 468999999999999999999988 3 221 22333 33445778889999998877654433333333333 3333
Q ss_pred ccCeEEEEEcCccccc--cccccccCC---CCCCCCeEEEEecCChhHHhhcc----------CCCeEeCCCCCHHHHHH
Q 001457 257 RQKRVLIILDDLWGKL--DLAVVGIPY---GEEHKGCKIILTSRFKEVCDEME----------STNYVQVEELTDEDRLI 321 (1074)
Q Consensus 257 ~~k~~LlVlDdv~~~~--~~~~~~~~~---~~~~~gs~iivTTR~~~v~~~~~----------~~~~~~l~~L~~~~~~~ 321 (1074)
.+++.+||+||++... .++.+.... ........|++|.... ....+. ....+++++++.+|..+
T Consensus 121 ~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e~~~ 199 (269)
T TIGR03015 121 AGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLDREETRE 199 (269)
T ss_pred CCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCCHHHHHH
Confidence 5788999999998753 344432111 1222233556665433 211111 12467899999999999
Q ss_pred HHHHhcCC---CCCCchhHHHHHHHHHHhCCChHHHHHHHHHH
Q 001457 322 LFKKKAGL---PEGTKAFDRAAEEVVRQCGKLPNAIVIIGTAL 361 (1074)
Q Consensus 322 lf~~~a~~---~~~~~~~~~~~~~i~~~c~glPLai~~~~~~l 361 (1074)
++...+.. .....-..+..+.|++.++|.|..|..++..+
T Consensus 200 ~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 200 YIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 98776641 11122345889999999999999999988876
No 24
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.15 E-value=2.5e-12 Score=133.94 Aligned_cols=135 Identities=21% Similarity=0.291 Sum_probs=100.0
Q ss_pred CCCCCccccCCCcEEeeccCCcccCCCC--CCCCCccEEEccCCCCCCCChhHHhcCCCccEEEecC-CccCCCCC-Ccc
Q 001457 500 KKGWPREDLQNCEKLSLMDGNVTALPDQ--PKCPRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSS-TNISSLAP-SLP 575 (1074)
Q Consensus 500 ~~~~~~~~~~~~~~L~l~~~~~~~l~~~--~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~lp~-~i~ 575 (1074)
...+|.+-......+.+..|.|..+|.. ..+++||.|+|+.|.++.+.+..|.+++.|..|-+.+ |+|+.+|. .|+
T Consensus 58 L~eVP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~ 137 (498)
T KOG4237|consen 58 LTEVPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFG 137 (498)
T ss_pred cccCcccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhh
Confidence 3444443345667777878888887763 6678888888888888888888888888776666555 77888876 677
Q ss_pred CCccCCeeeccCCCCCC--CccccCCCCccEEEeeCCCCcccCc-cccCCCCCCEEeCCCCc
Q 001457 576 CLEKLRSLHLENTHLND--ASLIREFGELEVLILKGSRIVELPN-GIGTVSNLKLLDLSNNL 634 (1074)
Q Consensus 576 ~l~~Lr~L~L~~~~l~~--~~~i~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~ 634 (1074)
+|..|+.|.+.-|++.. ...+..+++|..|.+..|.+..++. .+..+..++++.+..|.
T Consensus 138 gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 138 GLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred hHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCc
Confidence 78888888888887776 5667778888888888887777776 57777788887777665
No 25
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.12 E-value=3.5e-12 Score=132.94 Aligned_cols=137 Identities=25% Similarity=0.389 Sum_probs=101.7
Q ss_pred CcccCCCCCCCCCccEEEccCCCCCCCChhHHhcCCCccEEEecCCccCCC-CCCccCCccCCeeeccC-CCCCC--Ccc
Q 001457 520 NVTALPDQPKCPRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSL-APSLPCLEKLRSLHLEN-THLND--ASL 595 (1074)
Q Consensus 520 ~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~Lr~L~L~~-~~l~~--~~~ 595 (1074)
.+.++|.. -.+....+.|..|.++.+|+..|+.+++||.||||+|.|+.+ |..|..++.|-.|-+.+ |+|++ -..
T Consensus 57 GL~eVP~~-LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~ 135 (498)
T KOG4237|consen 57 GLTEVPAN-LPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGA 135 (498)
T ss_pred CcccCccc-CCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhH
Confidence 34455541 124566788888999999999999999999999999998866 45788888876666555 77888 345
Q ss_pred ccCCCCccEEEeeCCCCcccCc-cccCCCCCCEEeCCCCcCCCCcChhhhcCCCCcCEEEccCC
Q 001457 596 IREFGELEVLILKGSRIVELPN-GIGTVSNLKLLDLSNNLFLQVIPPNVISKLSQLEELYVGNS 658 (1074)
Q Consensus 596 i~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~~~~~~p~~~i~~L~~L~~L~l~~~ 658 (1074)
+++|..|+-|.+.-|++..++. .+..|++|..|.+.+|. ...++.+.+..+.+++++.+..|
T Consensus 136 F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlhlA~n 198 (498)
T KOG4237|consen 136 FGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLHLAQN 198 (498)
T ss_pred hhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchh-hhhhccccccchhccchHhhhcC
Confidence 7788888888888888876654 47788888888888876 45566655777788888776554
No 26
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.11 E-value=1.8e-12 Score=136.23 Aligned_cols=269 Identities=18% Similarity=0.204 Sum_probs=166.1
Q ss_pred HHHHHHHhccceeeeccCCCccccccccc-ccCCCccEEEEecc-ccccccccCcccccccceeEEEeeecccceeeccc
Q 001457 739 SWVKLLLEKTEYLTLTRSSNLQDIGEIDV-QGFTGLMCMHLRAC-SMQRIFHSNFYPTVQILEELHVEYCYSLKEVFCLE 816 (1074)
Q Consensus 739 ~~~~~~~~~L~~L~L~~~~~l~~~~~l~~-~~l~~L~~L~L~~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~ 816 (1074)
..+...++|+++|.+.+|..+++.....+ ..+++|++|.+..| .+++.........+++|++|++++|+.+.. .
T Consensus 157 rt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~----~ 232 (483)
T KOG4341|consen 157 RTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISG----N 232 (483)
T ss_pred hHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhc----C
Confidence 34455789999999999998877643332 45889999999998 444444334567799999999999987654 2
Q ss_pred ccccccccCCCcceeecCCccCcceeeccccccccccccceEEEecCCCccccccchhHhhhcCCCceecccccccceee
Q 001457 817 DIEGEQAGLKRLRELVLVGLPKVLTIWKGNHSVVYLKTLKLMKVKDCGKLRYLFSRTLAEGLGNLEDLSILKCDLMEEIV 896 (1074)
Q Consensus 817 ~~~~~~~~~~~L~~L~L~~~~~L~~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~i~ 896 (1074)
++.....+...|+.+.+.+|..++.-. -......++-+.++++..|..+++.........+..|+.|..++|..+.+.+
T Consensus 233 gv~~~~rG~~~l~~~~~kGC~e~~le~-l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~ 311 (483)
T KOG4341|consen 233 GVQALQRGCKELEKLSLKGCLELELEA-LLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEV 311 (483)
T ss_pred cchHHhccchhhhhhhhcccccccHHH-HHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHH
Confidence 233333446667778777876543210 0011245666777777788888776434445667888888888887765532
Q ss_pred ccchhhHhhhhhhccccccCCCCcccCCceEEEecccccccccccccccccccCccEEEEeeccCcceeecccchhhccc
Q 001457 897 SVDEAEVEQGAAQERNVSSAPQPMFFPNLKKLLIGKCNKMKRVLSLTNAHNLKQLEELTVASCNHMERIITVSDEEKAAE 976 (1074)
Q Consensus 897 ~~~~~~~~~~~l~~l~l~~~~~~~~~~~L~~L~l~~C~~L~~~~~~~~~~~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~ 976 (1074)
-..- ..+.++|+.|-+.+|..+.+........+++.|+.+++.+|..+.+-- ...
T Consensus 312 l~aL------------------g~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~t-------L~s 366 (483)
T KOG4341|consen 312 LWAL------------------GQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGT-------LAS 366 (483)
T ss_pred HHHH------------------hcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhh-------Hhh
Confidence 1100 124577777777777777776655556677777777777776543320 112
Q ss_pred CcccccccccccccccccccccccC---ccccccCCCccEEEEeCCCCCCCC-CCCCCCCcccccc
Q 001457 977 NKNVLPKLKILALEDLPELDSVYNG---EIAALRWPSLEELKVWDCPKLMKL-PLDTRSAPKLETF 1038 (1074)
Q Consensus 977 ~~~~l~~L~~L~l~~c~~L~~i~~~---~~~~~~~~~L~~L~i~~C~~L~~l-p~~~~~l~~L~~l 1038 (1074)
...++|.|+.|.++.|..+++-... .... +...|+.+.+.+||.++.- -.-+...+.|+.+
T Consensus 367 ls~~C~~lr~lslshce~itD~gi~~l~~~~c-~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri 431 (483)
T KOG4341|consen 367 LSRNCPRLRVLSLSHCELITDEGIRHLSSSSC-SLEGLEVLELDNCPLITDATLEHLSICRNLERI 431 (483)
T ss_pred hccCCchhccCChhhhhhhhhhhhhhhhhccc-cccccceeeecCCCCchHHHHHHHhhCccccee
Confidence 3446777777777777665554111 1111 2356777777777766431 1123344455544
No 27
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.11 E-value=2.6e-08 Score=114.55 Aligned_cols=285 Identities=18% Similarity=0.126 Sum_probs=167.3
Q ss_pred CcchHHHHHHHHHHHhcC--CCceeEEEEEcCCCCcHHHHHHHHHhh-cCC--CCeEEEEEecCCcCHHHHHHHHHHHhc
Q 001457 162 LKSALEVIKSVMKLLKDN--SISINIIGVYGSGGIGKTTLMKQVMKQ-EIP--FDKVIFVRVTQTPDVKRVQDEIARFLN 236 (1074)
Q Consensus 162 ~~~r~~~~~~l~~~l~~~--~~~~~vi~I~G~gG~GKTtLa~~v~~~-~~~--F~~~~wv~vs~~~~~~~~~~~i~~~l~ 236 (1074)
+.+|+++++++...+.+. +.....+.|+|++|+|||++++.++++ ... .-..+++++....+...++..|++++.
T Consensus 32 l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~ 111 (394)
T PRK00411 32 LPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIARQLF 111 (394)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHHHHhc
Confidence 567999999888887432 222456789999999999999999998 332 234567777777778889999999886
Q ss_pred cC-C--CcchHHHHHHHHHHHHH-ccCeEEEEEcCccccc------cccccccCCCCCCCCeE--EEEecCChhHHhhcc
Q 001457 237 TE-L--EGDVEVLRAAFLSERLK-RQKRVLIILDDLWGKL------DLAVVGIPYGEEHKGCK--IILTSRFKEVCDEME 304 (1074)
Q Consensus 237 ~~-~--~~~~~~~~~~~l~~~l~-~~k~~LlVlDdv~~~~------~~~~~~~~~~~~~~gs~--iivTTR~~~v~~~~~ 304 (1074)
.. . .+.........+.+.+. .++..+||+|+++... .+..+.... ....+++ ||.++....+.....
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~-~~~~~~~v~vI~i~~~~~~~~~l~ 190 (394)
T PRK00411 112 GHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAH-EEYPGARIGVIGISSDLTFLYILD 190 (394)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhh-hccCCCeEEEEEEECCcchhhhcC
Confidence 52 1 12233455566666665 3466899999998632 222222111 1122333 566666554422211
Q ss_pred -------CCCeEeCCCCCHHHHHHHHHHhcCC-----CCCCchhHHHHHHHHHHhCCChHHHHHHHHHH--c---CC---
Q 001457 305 -------STNYVQVEELTDEDRLILFKKKAGL-----PEGTKAFDRAAEEVVRQCGKLPNAIVIIGTAL--R---HK--- 364 (1074)
Q Consensus 305 -------~~~~~~l~~L~~~~~~~lf~~~a~~-----~~~~~~~~~~~~~i~~~c~glPLai~~~~~~l--~---~~--- 364 (1074)
....+.+++++.++..+++..++.. ......++.+++......|..+.|+.++-.+. . +.
T Consensus 191 ~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~~~~~I 270 (394)
T PRK00411 191 PRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAEREGSRKV 270 (394)
T ss_pred HHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCCCc
Confidence 1246789999999999999877631 11122233334434333566777877764432 1 11
Q ss_pred ChhHHHHHHHHHhhCCCCCCCCchHHHHHHHHHhhcCChhhHHHHHHhhc-CCC-CCCccchHHHHHH--Hhhhcccccc
Q 001457 365 PVREWNEAIKRKKASTPINVEGIPEEVVLCVALGYDQLETVAKSCLQFSC-LFP-PYYSVSMEEFVIH--GLVDRLFPQV 440 (1074)
Q Consensus 365 ~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cf~~~s-~fp-~~~~i~~~~li~~--wia~g~i~~~ 440 (1074)
+.++...+.+... .....-.+..||.+.|..+..++ ... ....+...++... .+++.+-...
T Consensus 271 ~~~~v~~a~~~~~--------------~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~~~~~ 336 (394)
T PRK00411 271 TEEDVRKAYEKSE--------------IVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEELGYEP 336 (394)
T ss_pred CHHHHHHHHHHHH--------------HHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHcCCCc
Confidence 3455655555331 12234567899998887665443 222 1134555555533 2222211111
Q ss_pred cchhhhhhcHHHHHHHHHhcccccc
Q 001457 441 GLLGEVGNRVHPVVLRLISSSLLLE 465 (1074)
Q Consensus 441 ~~~~~~~~~~~~~l~~L~~~~ll~~ 465 (1074)
-+. .....|+++|...|+|..
T Consensus 337 ~~~----~~~~~~l~~L~~~glI~~ 357 (394)
T PRK00411 337 RTH----TRFYEYINKLDMLGIINT 357 (394)
T ss_pred CcH----HHHHHHHHHHHhcCCeEE
Confidence 111 234569999999999853
No 28
>PF05729 NACHT: NACHT domain
Probab=99.06 E-value=1e-09 Score=109.52 Aligned_cols=139 Identities=26% Similarity=0.345 Sum_probs=89.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh--cCC-----CCeEEEEEecCCcCHH---HHHHHHHHHhccCCCcchHHHHHHHHHH
Q 001457 184 NIIGVYGSGGIGKTTLMKQVMKQ--EIP-----FDKVIFVRVTQTPDVK---RVQDEIARFLNTELEGDVEVLRAAFLSE 253 (1074)
Q Consensus 184 ~vi~I~G~gG~GKTtLa~~v~~~--~~~-----F~~~~wv~vs~~~~~~---~~~~~i~~~l~~~~~~~~~~~~~~~l~~ 253 (1074)
|++.|+|.+|+||||+++.++.+ ..+ +...+|+..+...... .+...|..+.........+ .+..
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-----~~~~ 75 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEE-----LLQE 75 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHH-----HHHH
Confidence 58999999999999999999988 222 4566777766544332 3444444443322111111 2233
Q ss_pred HHHccCeEEEEEcCcccccc---------ccccccCCCC--CCCCeEEEEecCChhH---HhhccCCCeEeCCCCCHHHH
Q 001457 254 RLKRQKRVLIILDDLWGKLD---------LAVVGIPYGE--EHKGCKIILTSRFKEV---CDEMESTNYVQVEELTDEDR 319 (1074)
Q Consensus 254 ~l~~~k~~LlVlDdv~~~~~---------~~~~~~~~~~--~~~gs~iivTTR~~~v---~~~~~~~~~~~l~~L~~~~~ 319 (1074)
.....++++||+|++++... +..+...+.. ..++++||||+|.... .........+++.+|++++.
T Consensus 76 ~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~~ 155 (166)
T PF05729_consen 76 LLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEEDI 155 (166)
T ss_pred HHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHHH
Confidence 33457999999999886422 1121111111 2468999999998877 33344446899999999999
Q ss_pred HHHHHHhc
Q 001457 320 LILFKKKA 327 (1074)
Q Consensus 320 ~~lf~~~a 327 (1074)
.+++.++.
T Consensus 156 ~~~~~~~f 163 (166)
T PF05729_consen 156 KQYLRKYF 163 (166)
T ss_pred HHHHHHHh
Confidence 99998775
No 29
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.99 E-value=9.9e-12 Score=130.83 Aligned_cols=260 Identities=17% Similarity=0.188 Sum_probs=147.6
Q ss_pred HHHHHHHHhccceeeeccCCCccccccc-ccccCCCccEEEEeccc-cccccccCcccccccceeEEEeeecccceeecc
Q 001457 738 ASWVKLLLEKTEYLTLTRSSNLQDIGEI-DVQGFTGLMCMHLRACS-MQRIFHSNFYPTVQILEELHVEYCYSLKEVFCL 815 (1074)
Q Consensus 738 ~~~~~~~~~~L~~L~L~~~~~l~~~~~l-~~~~l~~L~~L~L~~~~-~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~ 815 (1074)
...+...|+++++|++..|..+++..-. -..++++|++|.++.|. +...-.......+..|+.+..++|...+ +
T Consensus 182 ~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~----l 257 (483)
T KOG4341|consen 182 LLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELE----L 257 (483)
T ss_pred HHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhccccccc----H
Confidence 3344456667777777766666655221 23456777777777662 2221111123445556666555654331 1
Q ss_pred cccccccccCCCcceeecCCccCcceeeccccccccccccceEEEecCCCccccccchhHhhhcCCCceeccccccccee
Q 001457 816 EDIEGEQAGLKRLRELVLVGLPKVLTIWKGNHSVVYLKTLKLMKVKDCGKLRYLFSRTLAEGLGNLEDLSILKCDLMEEI 895 (1074)
Q Consensus 816 ~~~~~~~~~~~~L~~L~L~~~~~L~~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~i 895 (1074)
+.+....+..+-+.++++..|..+++.. ...-...+..|+.|..++|..+.+.....+.++.++|+.|.+++|...++.
T Consensus 258 e~l~~~~~~~~~i~~lnl~~c~~lTD~~-~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~ 336 (483)
T KOG4341|consen 258 EALLKAAAYCLEILKLNLQHCNQLTDED-LWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDR 336 (483)
T ss_pred HHHHHHhccChHhhccchhhhccccchH-HHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhh
Confidence 1112222335555666666665555421 111223566777777777777766654455567777888888777765543
Q ss_pred eccchhhHhhhhhhccccccCCCCcccCCceEEEecccccccccccccccccccCccEEEEeeccCcceeecccchhhcc
Q 001457 896 VSVDEAEVEQGAAQERNVSSAPQPMFFPNLKKLLIGKCNKMKRVLSLTNAHNLKQLEELTVASCNHMERIITVSDEEKAA 975 (1074)
Q Consensus 896 ~~~~~~~~~~~~l~~l~l~~~~~~~~~~~L~~L~l~~C~~L~~~~~~~~~~~l~~L~~L~i~~C~~l~~l~~~~~~~~~~ 975 (1074)
-... --.+++.|+.+++.+|....+....+...++|.|+.|.+++|..+++-.. ....
T Consensus 337 ~ft~------------------l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi----~~l~ 394 (483)
T KOG4341|consen 337 GFTM------------------LGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGI----RHLS 394 (483)
T ss_pred hhhh------------------hhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhh----hhhh
Confidence 1100 01256777777777777766654444566777888888887776654310 0011
Q ss_pred cCcccccccccccccccccccccccCccccccCCCccEEEEeCCCCCCCCC
Q 001457 976 ENKNVLPKLKILALEDLPELDSVYNGEIAALRWPSLEELKVWDCPKLMKLP 1026 (1074)
Q Consensus 976 ~~~~~l~~L~~L~l~~c~~L~~i~~~~~~~~~~~~L~~L~i~~C~~L~~lp 1026 (1074)
....+...|..|.+.+||.+++-....+. .|++||.+++.+|...++-|
T Consensus 395 ~~~c~~~~l~~lEL~n~p~i~d~~Le~l~--~c~~Leri~l~~~q~vtk~~ 443 (483)
T KOG4341|consen 395 SSSCSLEGLEVLELDNCPLITDATLEHLS--ICRNLERIELIDCQDVTKEA 443 (483)
T ss_pred hccccccccceeeecCCCCchHHHHHHHh--hCcccceeeeechhhhhhhh
Confidence 22344556777778888777665544333 46788888888887776644
No 30
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.98 E-value=3.2e-07 Score=104.46 Aligned_cols=286 Identities=16% Similarity=0.077 Sum_probs=164.9
Q ss_pred CcchHHHHHHHHHHHhcC--CCceeEEEEEcCCCCcHHHHHHHHHhh-cCCC------CeEEEEEecCCcCHHHHHHHHH
Q 001457 162 LKSALEVIKSVMKLLKDN--SISINIIGVYGSGGIGKTTLMKQVMKQ-EIPF------DKVIFVRVTQTPDVKRVQDEIA 232 (1074)
Q Consensus 162 ~~~r~~~~~~l~~~l~~~--~~~~~vi~I~G~gG~GKTtLa~~v~~~-~~~F------~~~~wv~vs~~~~~~~~~~~i~ 232 (1074)
+.||+++++++...+.+. +.....+.|+|++|+|||++++.++++ .... -..+|+++....+...++..|+
T Consensus 17 l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~i~ 96 (365)
T TIGR02928 17 IVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLVELA 96 (365)
T ss_pred CCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHHHHH
Confidence 568999999999887641 122467899999999999999999987 2111 1356788777777788999999
Q ss_pred HHhc---cCCC--cchHHHHHHHHHHHHH-ccCeEEEEEcCccccc-c----ccccccCC-CCCC--CCeEEEEecCChh
Q 001457 233 RFLN---TELE--GDVEVLRAAFLSERLK-RQKRVLIILDDLWGKL-D----LAVVGIPY-GEEH--KGCKIILTSRFKE 298 (1074)
Q Consensus 233 ~~l~---~~~~--~~~~~~~~~~l~~~l~-~~k~~LlVlDdv~~~~-~----~~~~~~~~-~~~~--~gs~iivTTR~~~ 298 (1074)
.++. .... +.+.......+.+.+. .+++++||+|+++... . +..+.... .... ....+|.+|....
T Consensus 97 ~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~n~~~ 176 (365)
T TIGR02928 97 NQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGISNDLK 176 (365)
T ss_pred HHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEECCcc
Confidence 9883 3221 1223344455555553 3578899999998651 1 12221110 1111 2334555554443
Q ss_pred HHhhcc-------CCCeEeCCCCCHHHHHHHHHHhcC---C-CCCCchhHHHHHHHHHHhCCChHH-HHHHHHHH----c
Q 001457 299 VCDEME-------STNYVQVEELTDEDRLILFKKKAG---L-PEGTKAFDRAAEEVVRQCGKLPNA-IVIIGTAL----R 362 (1074)
Q Consensus 299 v~~~~~-------~~~~~~l~~L~~~~~~~lf~~~a~---~-~~~~~~~~~~~~~i~~~c~glPLa-i~~~~~~l----~ 362 (1074)
....+. ....+.+++.+.++-.+++..++. . ..-.++..+...+++....|-|-. +.++-... .
T Consensus 177 ~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~~a~~ 256 (365)
T TIGR02928 177 FRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAGEIAER 256 (365)
T ss_pred hHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 211111 124688999999999999987763 1 112233334555677777788843 33322211 1
Q ss_pred -CC---ChhHHHHHHHHHhhCCCCCCCCchHHHHHHHHHhhcCChhhHHHHHHhhcCC--CCCCccchHHHHHHHh--hh
Q 001457 363 -HK---PVREWNEAIKRKKASTPINVEGIPEEVVLCVALGYDQLETVAKSCLQFSCLF--PPYYSVSMEEFVIHGL--VD 434 (1074)
Q Consensus 363 -~~---~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cf~~~s~f--p~~~~i~~~~li~~wi--a~ 434 (1074)
+. +.+....+.+.+. .....-++..||.+.|..+..+... .++..+...++...+- ++
T Consensus 257 ~~~~~it~~~v~~a~~~~~--------------~~~~~~~i~~l~~~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~~~~ 322 (365)
T TIGR02928 257 EGAERVTEDHVEKAQEKIE--------------KDRLLELIRGLPTHSKLVLLAIANLAANDEDPFRTGEVYEVYKEVCE 322 (365)
T ss_pred cCCCCCCHHHHHHHHHHHH--------------HHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHH
Confidence 11 3444444444321 1223445678998888665544311 1445567777766332 22
Q ss_pred cccccccchhhhhhcHHHHHHHHHhcccccc
Q 001457 435 RLFPQVGLLGEVGNRVHPVVLRLISSSLLLE 465 (1074)
Q Consensus 435 g~i~~~~~~~~~~~~~~~~l~~L~~~~ll~~ 465 (1074)
.+-....+ ......+++.|...|++..
T Consensus 323 ~~~~~~~~----~~~~~~~l~~l~~~gli~~ 349 (365)
T TIGR02928 323 DIGVDPLT----QRRISDLLNELDMLGLVEA 349 (365)
T ss_pred hcCCCCCc----HHHHHHHHHHHHhcCCeEE
Confidence 11111111 2344578999999999853
No 31
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.97 E-value=2.9e-09 Score=113.16 Aligned_cols=192 Identities=17% Similarity=0.228 Sum_probs=102.8
Q ss_pred CcchHHHHHHHHHHHhcCCCceeEEEEEcCCCCcHHHHHHHHHhh-cCCCCeEEEEEecCCcCHHHHHHH---------H
Q 001457 162 LKSALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKRVQDE---------I 231 (1074)
Q Consensus 162 ~~~r~~~~~~l~~~l~~~~~~~~vi~I~G~gG~GKTtLa~~v~~~-~~~F~~~~wv~vs~~~~~~~~~~~---------i 231 (1074)
+.||++++++|.+.+..+. .+.+.|+|+.|+|||+|++.+.+. +..-..++|+...+......+... +
T Consensus 1 F~gR~~el~~l~~~l~~~~--~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~l 78 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGP--SQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSFIEETSLADEL 78 (234)
T ss_dssp S-S-HHHHHHHHHCHHH----SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHHHHHHHHHCHC
T ss_pred CCCHHHHHHHHHHHHHhhc--CcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHHHHHHHHHHHH
Confidence 4689999999999888765 678999999999999999999998 222124455544443322221111 1
Q ss_pred HHHhccCCC-----------cchHHHHHHHHHHHHH-ccCeEEEEEcCccccc-ccc-------cc---ccCCCCCCCCe
Q 001457 232 ARFLNTELE-----------GDVEVLRAAFLSERLK-RQKRVLIILDDLWGKL-DLA-------VV---GIPYGEEHKGC 288 (1074)
Q Consensus 232 ~~~l~~~~~-----------~~~~~~~~~~l~~~l~-~~k~~LlVlDdv~~~~-~~~-------~~---~~~~~~~~~gs 288 (1074)
...+..... ..........+.+.+. .+++.+||+||+.... ... .+ ...... ...-
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~ 157 (234)
T PF01637_consen 79 SEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLS-QQNV 157 (234)
T ss_dssp HHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH-----TTE
T ss_pred HHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccc-cCCc
Confidence 122221110 1111233334444443 3566999999987654 111 11 111112 2334
Q ss_pred EEEEecCChhHHhh--------ccCCCeEeCCCCCHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhCCChHHHHH
Q 001457 289 KIILTSRFKEVCDE--------MESTNYVQVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLPNAIVI 356 (1074)
Q Consensus 289 ~iivTTR~~~v~~~--------~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~i~~~c~glPLai~~ 356 (1074)
.+|+++....+... .+....+.+++|+.+++++++...+.....-+.-.+..++|...+||.|..|..
T Consensus 158 ~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 158 SIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKELIKLPFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp EEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC------HHHHHHHHHHHTT-HHHHHH
T ss_pred eEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCCHHHHhc
Confidence 45555554544332 223346999999999999999987653311122456679999999999987753
No 32
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.93 E-value=7e-10 Score=108.33 Aligned_cols=133 Identities=26% Similarity=0.383 Sum_probs=43.6
Q ss_pred cccCCCCCCCCCccEEEccCCCCCCCChhHHhcCCCccEEEecCCccCCCCCCccCCccCCeeeccCCCCCC-Cccc-cC
Q 001457 521 VTALPDQPKCPRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSLAPSLPCLEKLRSLHLENTHLND-ASLI-RE 598 (1074)
Q Consensus 521 ~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~Lr~L~L~~~~l~~-~~~i-~~ 598 (1074)
+...+...++.+++.|++.+|.++.+.. .-..+.+|++|++++|.++.+. .+..+++|+.|++++|.|+. .+.+ ..
T Consensus 9 i~~~~~~~n~~~~~~L~L~~n~I~~Ie~-L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~ 86 (175)
T PF14580_consen 9 IEQIAQYNNPVKLRELNLRGNQISTIEN-LGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKN 86 (175)
T ss_dssp ---------------------------S---TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHHH
T ss_pred cccccccccccccccccccccccccccc-hhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHHh
Confidence 3444444455566777777776665543 1124567777777777777664 46667777777777777776 3334 35
Q ss_pred CCCccEEEeeCCCCcccCc--cccCCCCCCEEeCCCCcCCCCc--ChhhhcCCCCcCEEEc
Q 001457 599 FGELEVLILKGSRIVELPN--GIGTVSNLKLLDLSNNLFLQVI--PPNVISKLSQLEELYV 655 (1074)
Q Consensus 599 l~~L~~L~L~~~~i~~lp~--~i~~L~~L~~L~l~~~~~~~~~--p~~~i~~L~~L~~L~l 655 (1074)
+++|++|++++|+|..+.. .+..+++|++|++.+|++...- -..++..+++|+.|+-
T Consensus 87 lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 87 LPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp -TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred CCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 7777777777777665432 3567778888888877754321 1234677888888873
No 33
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.90 E-value=6.6e-08 Score=106.88 Aligned_cols=272 Identities=14% Similarity=0.127 Sum_probs=150.2
Q ss_pred cccCcchHHHHHHHHHHHhcC---CCceeEEEEEcCCCCcHHHHHHHHHhh-cCCCCeEEEEEecCCcCHHHHHHHHHHH
Q 001457 159 FVPLKSALEVIKSVMKLLKDN---SISINIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKRVQDEIARF 234 (1074)
Q Consensus 159 ~~~~~~r~~~~~~l~~~l~~~---~~~~~vi~I~G~gG~GKTtLa~~v~~~-~~~F~~~~wv~vs~~~~~~~~~~~i~~~ 234 (1074)
+..+.|+++.++.+..++... ......+.++|++|+|||+||+.+.+. ...|. .+..+....... +...+..
T Consensus 3 ~~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~---~~~~~~~~~~~~-l~~~l~~ 78 (305)
T TIGR00635 3 LAEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGVNLK---ITSGPALEKPGD-LAAILTN 78 (305)
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEE---EeccchhcCchh-HHHHHHh
Confidence 345678888888877776531 223567889999999999999999988 43321 222111111222 2222233
Q ss_pred hccCC----Cc--chHHHHHHHHHHHHHccCeEEEEEcCccccccccccccCCCCCCCCeEEEEecCChhHHhhcc--CC
Q 001457 235 LNTEL----EG--DVEVLRAAFLSERLKRQKRVLIILDDLWGKLDLAVVGIPYGEEHKGCKIILTSRFKEVCDEME--ST 306 (1074)
Q Consensus 235 l~~~~----~~--~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~~~~~~~~~~~gs~iivTTR~~~v~~~~~--~~ 306 (1074)
++... ++ .-.......+...+. +.+..+|+|+..+...+.. +++ +.+-|.+||+...+..... ..
T Consensus 79 ~~~~~vl~iDEi~~l~~~~~e~l~~~~~-~~~~~~v~~~~~~~~~~~~---~~~---~~~li~~t~~~~~l~~~l~sR~~ 151 (305)
T TIGR00635 79 LEEGDVLFIDEIHRLSPAVEELLYPAME-DFRLDIVIGKGPSARSVRL---DLP---PFTLVGATTRAGMLTSPLRDRFG 151 (305)
T ss_pred cccCCEEEEehHhhhCHHHHHHhhHHHh-hhheeeeeccCccccceee---cCC---CeEEEEecCCccccCHHHHhhcc
Confidence 32111 00 001122233444453 4566677777666555432 222 2566777888765533221 13
Q ss_pred CeEeCCCCCHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhCCChHHHHHHHHHHcCCChhHHHHHHHHHhhCCCCCCCC
Q 001457 307 NYVQVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLPNAIVIIGTALRHKPVREWNEAIKRKKASTPINVEG 386 (1074)
Q Consensus 307 ~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~l~~~~~~~w~~~~~~l~~~~~~~~~~ 386 (1074)
..+++++++.++..+++.+.+... ...-..+....|++.|+|.|-.+..++..+ |..+.. .. ..... .+
T Consensus 152 ~~~~l~~l~~~e~~~il~~~~~~~-~~~~~~~al~~ia~~~~G~pR~~~~ll~~~-------~~~a~~-~~-~~~it-~~ 220 (305)
T TIGR00635 152 IILRLEFYTVEELAEIVSRSAGLL-NVEIEPEAALEIARRSRGTPRIANRLLRRV-------RDFAQV-RG-QKIIN-RD 220 (305)
T ss_pred eEEEeCCCCHHHHHHHHHHHHHHh-CCCcCHHHHHHHHHHhCCCcchHHHHHHHH-------HHHHHH-cC-CCCcC-HH
Confidence 468999999999999999887621 122235677889999999996655444422 211110 00 00000 00
Q ss_pred chHHHHHHHHHhhcCChhhHHHHHH-hhcCCCCCCccchHHHHHHHhhhcccccccchhhhhhcHHHHHH-HHHhccccc
Q 001457 387 IPEEVVLCVALGYDQLETVAKSCLQ-FSCLFPPYYSVSMEEFVIHGLVDRLFPQVGLLGEVGNRVHPVVL-RLISSSLLL 464 (1074)
Q Consensus 387 ~~~~~~~~l~~sy~~L~~~~k~cf~-~~s~fp~~~~i~~~~li~~wia~g~i~~~~~~~~~~~~~~~~l~-~L~~~~ll~ 464 (1074)
.-......+...|..++++.+..+. ....++.+ .+..+.+.... | .+ ...+...++ .|++++|++
T Consensus 221 ~v~~~l~~l~~~~~~l~~~~~~~L~al~~~~~~~-~~~~~~ia~~l---g--~~-------~~~~~~~~e~~Li~~~li~ 287 (305)
T TIGR00635 221 IALKALEMLMIDELGLDEIDRKLLSVLIEQFQGG-PVGLKTLAAAL---G--ED-------ADTIEDVYEPYLLQIGFLQ 287 (305)
T ss_pred HHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhCCC-cccHHHHHHHh---C--CC-------cchHHHhhhHHHHHcCCcc
Confidence 1133344466778889998877666 55667543 45544443222 1 11 112334567 699999996
Q ss_pred c
Q 001457 465 E 465 (1074)
Q Consensus 465 ~ 465 (1074)
.
T Consensus 288 ~ 288 (305)
T TIGR00635 288 R 288 (305)
T ss_pred c
Confidence 3
No 34
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.89 E-value=1.4e-07 Score=109.43 Aligned_cols=285 Identities=15% Similarity=0.162 Sum_probs=177.1
Q ss_pred HHHHHHhcCCCceeEEEEEcCCCCcHHHHHHHHHhhcCCCCeEEEEEecCC-cCHHHHHHHHHHHhccCCCcchH-----
Q 001457 171 SVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQEIPFDKVIFVRVTQT-PDVKRVQDEIARFLNTELEGDVE----- 244 (1074)
Q Consensus 171 ~l~~~l~~~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~F~~~~wv~vs~~-~~~~~~~~~i~~~l~~~~~~~~~----- 244 (1074)
.+++.|... .+.+.+.|..++|.|||||+.+.......-..+.|+++.+. .+...+..-++..++...+...+
T Consensus 26 rL~~~L~~~-~~~RL~li~APAGfGKttl~aq~~~~~~~~~~v~Wlslde~dndp~rF~~yLi~al~~~~p~~~~~a~~l 104 (894)
T COG2909 26 RLLDRLRRA-NDYRLILISAPAGFGKTTLLAQWRELAADGAAVAWLSLDESDNDPARFLSYLIAALQQATPTLGDEAQTL 104 (894)
T ss_pred HHHHHHhcC-CCceEEEEeCCCCCcHHHHHHHHHHhcCcccceeEeecCCccCCHHHHHHHHHHHHHHhCccccHHHHHH
Confidence 455555544 23899999999999999999988765333356899999864 46777888887777643332221
Q ss_pred ---------HHHHHHHHHHHH-ccCeEEEEEcCcc---ccccccccccCCCCCCCCeEEEEecCChhHHhh---ccCCCe
Q 001457 245 ---------VLRAAFLSERLK-RQKRVLIILDDLW---GKLDLAVVGIPYGEEHKGCKIILTSRFKEVCDE---MESTNY 308 (1074)
Q Consensus 245 ---------~~~~~~l~~~l~-~~k~~LlVlDdv~---~~~~~~~~~~~~~~~~~gs~iivTTR~~~v~~~---~~~~~~ 308 (1074)
......+...+. -.++..+||||-. +..--..+..-+.....+-..|||||+..-... --....
T Consensus 105 ~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~l~la~lRlr~~l 184 (894)
T COG2909 105 LQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQLGLARLRLRDEL 184 (894)
T ss_pred HHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCCCcccceeehhhH
Confidence 112233333332 2468899999954 332222222223334468899999998753211 111122
Q ss_pred EeC----CCCCHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhCCChHHHHHHHHHHcCC-ChhHHHHHHHHHhhCCCCC
Q 001457 309 VQV----EELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLPNAIVIIGTALRHK-PVREWNEAIKRKKASTPIN 383 (1074)
Q Consensus 309 ~~l----~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~l~~~-~~~~w~~~~~~l~~~~~~~ 383 (1074)
.++ =.|+.+|+-++|...-+. +-.+.-.+.+.+...|=+-|+..++=.++.. +.+.--..+
T Consensus 185 lEi~~~~Lrf~~eE~~~fl~~~~~l----~Ld~~~~~~L~~~teGW~~al~L~aLa~~~~~~~~q~~~~L---------- 250 (894)
T COG2909 185 LEIGSEELRFDTEEAAAFLNDRGSL----PLDAADLKALYDRTEGWAAALQLIALALRNNTSAEQSLRGL---------- 250 (894)
T ss_pred HhcChHhhcCChHHHHHHHHHcCCC----CCChHHHHHHHhhcccHHHHHHHHHHHccCCCcHHHHhhhc----------
Confidence 333 268999999999887642 2223446778888999998888888877733 222111111
Q ss_pred CCCchHHHHH-HHHHhhcCChhhHHHHHHhhcCCCCCCccchHHHHHHHhhhcccccccchhhhhhcHHHHHHHHHhccc
Q 001457 384 VEGIPEEVVL-CVALGYDQLETVAKSCLQFSCLFPPYYSVSMEEFVIHGLVDRLFPQVGLLGEVGNRVHPVVLRLISSSL 462 (1074)
Q Consensus 384 ~~~~~~~~~~-~l~~sy~~L~~~~k~cf~~~s~fp~~~~i~~~~li~~wia~g~i~~~~~~~~~~~~~~~~l~~L~~~~l 462 (1074)
.+..+.+.. ...--++.||+++|..++-||+++.- . .+|+..- .+ .+.+...+++|.+++|
T Consensus 251 -sG~~~~l~dYL~eeVld~Lp~~l~~FLl~~svl~~f---~-~eL~~~L---------tg----~~ng~amLe~L~~~gL 312 (894)
T COG2909 251 -SGAASHLSDYLVEEVLDRLPPELRDFLLQTSVLSRF---N-DELCNAL---------TG----EENGQAMLEELERRGL 312 (894)
T ss_pred -cchHHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHHh---h-HHHHHHH---------hc----CCcHHHHHHHHHhCCC
Confidence 111122221 22345689999999999999998851 1 1222111 11 1123367999999998
Q ss_pred cc-c-CCCCcceeechhHHHHHHHHHhh
Q 001457 463 LL-E-GDRESCFRIHDDTRKVVKYIAAR 488 (1074)
Q Consensus 463 l~-~-~~~~~~~~mhdlv~~~~~~~~~~ 488 (1074)
+. + .++...|+.|.++.||.+.....
T Consensus 313 Fl~~Ldd~~~WfryH~LFaeFL~~r~~~ 340 (894)
T COG2909 313 FLQRLDDEGQWFRYHHLFAEFLRQRLQR 340 (894)
T ss_pred ceeeecCCCceeehhHHHHHHHHhhhcc
Confidence 64 3 45677899999999999877654
No 35
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.88 E-value=1.3e-07 Score=105.04 Aligned_cols=273 Identities=14% Similarity=0.131 Sum_probs=150.5
Q ss_pred CCcccCcchHHHHHHHHHHHhc---CCCceeEEEEEcCCCCcHHHHHHHHHhh-cCCCCeEEEEEecCCcCHHHHHHHHH
Q 001457 157 PEFVPLKSALEVIKSVMKLLKD---NSISINIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKRVQDEIA 232 (1074)
Q Consensus 157 ~~~~~~~~r~~~~~~l~~~l~~---~~~~~~vi~I~G~gG~GKTtLa~~v~~~-~~~F~~~~wv~vs~~~~~~~~~~~i~ 232 (1074)
..+..+.|+++.++.+...+.. .....+.+.|+|++|+||||+|+.+.+. ...+. ++..+ .......+..++
T Consensus 22 ~~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~---~~~~~-~~~~~~~l~~~l 97 (328)
T PRK00080 22 KSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVNIR---ITSGP-ALEKPGDLAAIL 97 (328)
T ss_pred CCHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCCeE---EEecc-cccChHHHHHHH
Confidence 3455577787777776655542 2233567889999999999999999998 43321 22211 111122223333
Q ss_pred HHhccCC----Cc--chHHHHHHHHHHHHHccCeEEEEEcCccccccccccccCCCCCCCCeEEEEecCChhHHhhcc--
Q 001457 233 RFLNTEL----EG--DVEVLRAAFLSERLKRQKRVLIILDDLWGKLDLAVVGIPYGEEHKGCKIILTSRFKEVCDEME-- 304 (1074)
Q Consensus 233 ~~l~~~~----~~--~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~~~~~~~~~~~gs~iivTTR~~~v~~~~~-- 304 (1074)
..+.... ++ .......+.+...+. +.+..+|+|+..+...+. ..++ +.+-|..|||...+.....
T Consensus 98 ~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e-~~~~~~~l~~~~~~~~~~---~~l~---~~~li~at~~~~~l~~~L~sR 170 (328)
T PRK00080 98 TNLEEGDVLFIDEIHRLSPVVEEILYPAME-DFRLDIMIGKGPAARSIR---LDLP---PFTLIGATTRAGLLTSPLRDR 170 (328)
T ss_pred HhcccCCEEEEecHhhcchHHHHHHHHHHH-hcceeeeeccCcccccee---ecCC---CceEEeecCCcccCCHHHHHh
Confidence 3332110 00 000112223334443 456666676655443322 1111 2456777777655533221
Q ss_pred CCCeEeCCCCCHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhCCChHHHHHHHHHHcCCChhHHHHHHHHHhhCCCCCC
Q 001457 305 STNYVQVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLPNAIVIIGTALRHKPVREWNEAIKRKKASTPINV 384 (1074)
Q Consensus 305 ~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~l~~~~~~~w~~~~~~l~~~~~~~~ 384 (1074)
....+++++++.++..+++.+.+... ...-..+....|++.|+|.|-.+..+...+ ..|.... .. ..+
T Consensus 171 f~~~~~l~~~~~~e~~~il~~~~~~~-~~~~~~~~~~~ia~~~~G~pR~a~~~l~~~-----~~~a~~~----~~--~~I 238 (328)
T PRK00080 171 FGIVQRLEFYTVEELEKIVKRSARIL-GVEIDEEGALEIARRSRGTPRIANRLLRRV-----RDFAQVK----GD--GVI 238 (328)
T ss_pred cCeeeecCCCCHHHHHHHHHHHHHHc-CCCcCHHHHHHHHHHcCCCchHHHHHHHHH-----HHHHHHc----CC--CCC
Confidence 12468999999999999999887622 222335678999999999995444444322 1222111 00 011
Q ss_pred C-CchHHHHHHHHHhhcCChhhHHHHHH-hhcCCCCCCccchHHHHHHHhhhcccccccchhhhhhcHHHHHH-HHHhcc
Q 001457 385 E-GIPEEVVLCVALGYDQLETVAKSCLQ-FSCLFPPYYSVSMEEFVIHGLVDRLFPQVGLLGEVGNRVHPVVL-RLISSS 461 (1074)
Q Consensus 385 ~-~~~~~~~~~l~~sy~~L~~~~k~cf~-~~s~fp~~~~i~~~~li~~wia~g~i~~~~~~~~~~~~~~~~l~-~L~~~~ 461 (1074)
. ..-......+...|..|++..+..+. ....|+.+ .+..+.+... +-.+..+.+ ..++ .|++.+
T Consensus 239 ~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~-~~~~~~~a~~-----lg~~~~~~~-------~~~e~~Li~~~ 305 (328)
T PRK00080 239 TKEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGG-PVGLDTLAAA-----LGEERDTIE-------DVYEPYLIQQG 305 (328)
T ss_pred CHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCC-ceeHHHHHHH-----HCCCcchHH-------HHhhHHHHHcC
Confidence 1 11144555667778889887777775 77778765 4555555322 212222222 3455 899999
Q ss_pred cccc
Q 001457 462 LLLE 465 (1074)
Q Consensus 462 ll~~ 465 (1074)
|++.
T Consensus 306 li~~ 309 (328)
T PRK00080 306 FIQR 309 (328)
T ss_pred Cccc
Confidence 9964
No 36
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.84 E-value=2e-09 Score=105.22 Aligned_cols=132 Identities=26% Similarity=0.346 Sum_probs=50.1
Q ss_pred HhcCCCccEEEecCCccCCCCCCcc-CCccCCeeeccCCCCCCCccccCCCCccEEEeeCCCCcccCccc-cCCCCCCEE
Q 001457 551 FEHTREIKNLDLSSTNISSLAPSLP-CLEKLRSLHLENTHLNDASLIREFGELEVLILKGSRIVELPNGI-GTVSNLKLL 628 (1074)
Q Consensus 551 ~~~l~~L~~L~l~~~~~~~lp~~i~-~l~~Lr~L~L~~~~l~~~~~i~~l~~L~~L~L~~~~i~~lp~~i-~~L~~L~~L 628 (1074)
+.+...++.|+|+++.|+.+. .++ .+.+|+.|++++|.|+..+.+..+++|++|++++|.|+.++..+ ..+++|++|
T Consensus 15 ~~n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L 93 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQEL 93 (175)
T ss_dssp ----------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHHHH-TT--EE
T ss_pred ccccccccccccccccccccc-chhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchHHhCCcCCEE
Confidence 346667899999999998774 455 57899999999999999778888999999999999999887655 468999999
Q ss_pred eCCCCcCCCCcChhhhcCCCCcCEEEccCCcCCccccccccCCCCCccccccCcCCCEEEEe
Q 001457 629 DLSNNLFLQVIPPNVISKLSQLEELYVGNSFGDWEVEETANGQNARFSEVASLTRLTVLYIH 690 (1074)
Q Consensus 629 ~l~~~~~~~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 690 (1074)
++++|.+...-.-..+..+++|+.|++.+|... +...-...-+..+++|+.|+-.
T Consensus 94 ~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~-------~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 94 YLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC-------EKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp E-TTS---SCCCCGGGGG-TT--EEE-TT-GGG-------GSTTHHHHHHHH-TT-SEETTE
T ss_pred ECcCCcCCChHHhHHHHcCCCcceeeccCCccc-------chhhHHHHHHHHcChhheeCCE
Confidence 999987533211233778889999998887321 1111122335667777777654
No 37
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.82 E-value=1.6e-09 Score=121.13 Aligned_cols=84 Identities=19% Similarity=0.150 Sum_probs=38.8
Q ss_pred HhcCCCccEEEecCCccC-----CCCCCccCCccCCeeeccCCCCCC--------CccccCCCCccEEEeeCCCCc-ccC
Q 001457 551 FEHTREIKNLDLSSTNIS-----SLAPSLPCLEKLRSLHLENTHLND--------ASLIREFGELEVLILKGSRIV-ELP 616 (1074)
Q Consensus 551 ~~~l~~L~~L~l~~~~~~-----~lp~~i~~l~~Lr~L~L~~~~l~~--------~~~i~~l~~L~~L~L~~~~i~-~lp 616 (1074)
|..+..|++|+++++.++ .++..+...++|+.|+++++.+.. +..+.++++|+.|++++|.+. ..+
T Consensus 19 ~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 98 (319)
T cd00116 19 LPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGC 98 (319)
T ss_pred HHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHH
Confidence 444555555555555542 223334444555555555554441 123344455555555555443 222
Q ss_pred ccccCCCC---CCEEeCCCCc
Q 001457 617 NGIGTVSN---LKLLDLSNNL 634 (1074)
Q Consensus 617 ~~i~~L~~---L~~L~l~~~~ 634 (1074)
..+..+.+ |++|++++|.
T Consensus 99 ~~~~~l~~~~~L~~L~ls~~~ 119 (319)
T cd00116 99 GVLESLLRSSSLQELKLNNNG 119 (319)
T ss_pred HHHHHHhccCcccEEEeeCCc
Confidence 22222222 5555555554
No 38
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.71 E-value=6.8e-09 Score=116.09 Aligned_cols=129 Identities=27% Similarity=0.342 Sum_probs=63.8
Q ss_pred CCCccEEEccCCCCCCCChhHHhcCCC---ccEEEecCCccCC-----CCCCccCC-ccCCeeeccCCCCCC------Cc
Q 001457 530 CPRLTTLFLQNNPFADIPNAFFEHTRE---IKNLDLSSTNISS-----LAPSLPCL-EKLRSLHLENTHLND------AS 594 (1074)
Q Consensus 530 ~~~Lr~L~l~~~~~~~~~~~~~~~l~~---L~~L~l~~~~~~~-----lp~~i~~l-~~Lr~L~L~~~~l~~------~~ 594 (1074)
+++|+.|++++|.+.......+..+.. |+.|++++|.+.. +...+..+ ++|+.|++++|.++. +.
T Consensus 80 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~ 159 (319)
T cd00116 80 GCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAK 159 (319)
T ss_pred cCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHH
Confidence 456666666666554433333333333 6666666665541 11233444 556666666666552 22
Q ss_pred cccCCCCccEEEeeCCCCc-----ccCccccCCCCCCEEeCCCCcCCCCcC---hhhhcCCCCcCEEEccCC
Q 001457 595 LIREFGELEVLILKGSRIV-----ELPNGIGTVSNLKLLDLSNNLFLQVIP---PNVISKLSQLEELYVGNS 658 (1074)
Q Consensus 595 ~i~~l~~L~~L~L~~~~i~-----~lp~~i~~L~~L~~L~l~~~~~~~~~p---~~~i~~L~~L~~L~l~~~ 658 (1074)
.+..+.+|++|++++|.+. .++..+..+++|++|++++|.+...-+ ...+..+++|++|++++|
T Consensus 160 ~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n 231 (319)
T cd00116 160 ALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDN 231 (319)
T ss_pred HHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCC
Confidence 3444555666666666554 233334444566666666654321110 011344555666666554
No 39
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.70 E-value=1.2e-09 Score=119.40 Aligned_cols=140 Identities=27% Similarity=0.368 Sum_probs=64.1
Q ss_pred EeeccCCcccCCCC-CCCCCccEEEccCCCCCCCChhHHhcCCCccEEEecCCccCCCCCCccCCccCCeeeccCCCCCC
Q 001457 514 LSLMDGNVTALPDQ-PKCPRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSLAPSLPCLEKLRSLHLENTHLND 592 (1074)
Q Consensus 514 L~l~~~~~~~l~~~-~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~Lr~L~L~~~~l~~ 592 (1074)
.+++.|.+..+|.. ..+..|..+.+..|.+..+|... .++..|.+|||+.|+++.+|..++.|+ |++|-+++|+++.
T Consensus 80 aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i-~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNkl~~ 157 (722)
T KOG0532|consen 80 ADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAI-CNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNKLTS 157 (722)
T ss_pred hhccccccccCchHHHHHHHHHHHHHHhccceecchhh-hhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCcccc
Confidence 33444444444432 22334444444444444444432 344445555555555555554444443 4455555555444
Q ss_pred -CccccCCCCccEEEeeCCCCcccCccccCCCCCCEEeCCCCcCCCCcChhhhcCCCCcCEEEccCC
Q 001457 593 -ASLIREFGELEVLILKGSRIVELPNGIGTVSNLKLLDLSNNLFLQVIPPNVISKLSQLEELYVGNS 658 (1074)
Q Consensus 593 -~~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~L~~L~~L~l~~~ 658 (1074)
|..++.+..|..||.+.|.+..+|..++.|.+|+.|++..|. +..+|++ +..|+ |..|+++.|
T Consensus 158 lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~-l~~lp~E-l~~Lp-Li~lDfScN 221 (722)
T KOG0532|consen 158 LPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNH-LEDLPEE-LCSLP-LIRLDFSCN 221 (722)
T ss_pred CCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhh-hhhCCHH-HhCCc-eeeeecccC
Confidence 444444444555555555555555555555555555554444 2334443 33222 444444443
No 40
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.69 E-value=1.7e-09 Score=108.66 Aligned_cols=126 Identities=26% Similarity=0.360 Sum_probs=99.5
Q ss_pred cCCCcEEeeccCCcccCCCCCC-CCCccEEEccCCCCCCCChhHHhcCCCccEEEecCCccCCCCCCccCCccCCeeecc
Q 001457 508 LQNCEKLSLMDGNVTALPDQPK-CPRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSLAPSLPCLEKLRSLHLE 586 (1074)
Q Consensus 508 ~~~~~~L~l~~~~~~~l~~~~~-~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~Lr~L~L~ 586 (1074)
|+.++.+++++|.+..+....+ .|++|.|++++|.+..+.. +..+.+|..||||+|.++++-..-.++-|.+.|.|.
T Consensus 283 Wq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n--La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La 360 (490)
T KOG1259|consen 283 WQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN--LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLA 360 (490)
T ss_pred HhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh--hhhcccceEeecccchhHhhhhhHhhhcCEeeeehh
Confidence 6778888888888887776644 4888888888888776655 567888888888888887765555667788888888
Q ss_pred CCCCCCCccccCCCCccEEEeeCCCCcccC--ccccCCCCCCEEeCCCCcC
Q 001457 587 NTHLNDASLIREFGELEVLILKGSRIVELP--NGIGTVSNLKLLDLSNNLF 635 (1074)
Q Consensus 587 ~~~l~~~~~i~~l~~L~~L~L~~~~i~~lp--~~i~~L~~L~~L~l~~~~~ 635 (1074)
+|.|+..+.+++|.+|.+||+++|+|..+. .+||+|+.|++|.+.+|++
T Consensus 361 ~N~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 361 QNKIETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPL 411 (490)
T ss_pred hhhHhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCc
Confidence 888888888888888888888888887664 4588888888888888764
No 41
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.66 E-value=1e-09 Score=120.10 Aligned_cols=146 Identities=23% Similarity=0.364 Sum_probs=111.9
Q ss_pred cCCCcEEeeccCCcccCCCC-CCCCCccEEEccCCCCCCCChhHHhcCCCccEEEecCCccCCCCCCccCCccCCeeecc
Q 001457 508 LQNCEKLSLMDGNVTALPDQ-PKCPRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSLAPSLPCLEKLRSLHLE 586 (1074)
Q Consensus 508 ~~~~~~L~l~~~~~~~l~~~-~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~Lr~L~L~ 586 (1074)
+..+..+.+..|.+..+|.. ..+..|..|+++.|.+..+|..++ .--|++|-+++|+++.+|+.++.+.+|..|+.+
T Consensus 97 f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC--~lpLkvli~sNNkl~~lp~~ig~~~tl~~ld~s 174 (722)
T KOG0532|consen 97 FVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLC--DLPLKVLIVSNNKLTSLPEEIGLLPTLAHLDVS 174 (722)
T ss_pred HHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhh--cCcceeEEEecCccccCCcccccchhHHHhhhh
Confidence 33444556666666666653 566778888888888888887653 345888888888888888888888888888888
Q ss_pred CCCCCC-CccccCCCCccEEEeeCCCCcccCccccCCCCCCEEeCCCCcCCCCcChhhhcCCCCcCEEEccCC
Q 001457 587 NTHLND-ASLIREFGELEVLILKGSRIVELPNGIGTVSNLKLLDLSNNLFLQVIPPNVISKLSQLEELYVGNS 658 (1074)
Q Consensus 587 ~~~l~~-~~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~L~~L~~L~l~~~ 658 (1074)
.|.+.. |+.++.+..|+.|+++.|++..+|.++..| .|..||++.|+ +..+|.. |.+|+.||+|-|.+|
T Consensus 175 ~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~~L-pLi~lDfScNk-is~iPv~-fr~m~~Lq~l~LenN 244 (722)
T KOG0532|consen 175 KNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCSL-PLIRLDFSCNK-ISYLPVD-FRKMRHLQVLQLENN 244 (722)
T ss_pred hhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhCC-ceeeeecccCc-eeecchh-hhhhhhheeeeeccC
Confidence 888777 888888888888888888888888888744 57888888776 4667776 888888888888776
No 42
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.66 E-value=1.9e-07 Score=99.35 Aligned_cols=152 Identities=18% Similarity=0.225 Sum_probs=97.2
Q ss_pred HHHhcCCCceeEEEEEcCCCCcHHHHHHHHHhh-cCCCCeEEEEEecCCcCHHHHHHHHHHHhccCCCcchHHHHHHHHH
Q 001457 174 KLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKRVQDEIARFLNTELEGDVEVLRAAFLS 252 (1074)
Q Consensus 174 ~~l~~~~~~~~vi~I~G~gG~GKTtLa~~v~~~-~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~ 252 (1074)
.++..+. +.-...||++|+||||||+.+... ...| ..+|...+-.+-++++++.. +
T Consensus 41 r~v~~~~--l~SmIl~GPPG~GKTTlA~liA~~~~~~f-----~~~sAv~~gvkdlr~i~e~a----------------~ 97 (436)
T COG2256 41 RAVEAGH--LHSMILWGPPGTGKTTLARLIAGTTNAAF-----EALSAVTSGVKDLREIIEEA----------------R 97 (436)
T ss_pred HHHhcCC--CceeEEECCCCCCHHHHHHHHHHhhCCce-----EEeccccccHHHHHHHHHHH----------------H
Confidence 4444454 777889999999999999999988 5555 34444433333333443331 1
Q ss_pred HHHHccCeEEEEEcCccc--cccccccccCCCCCCCCeEEEE--ecCChhH---HhhccCCCeEeCCCCCHHHHHHHHHH
Q 001457 253 ERLKRQKRVLIILDDLWG--KLDLAVVGIPYGEEHKGCKIIL--TSRFKEV---CDEMESTNYVQVEELTDEDRLILFKK 325 (1074)
Q Consensus 253 ~~l~~~k~~LlVlDdv~~--~~~~~~~~~~~~~~~~gs~iiv--TTR~~~v---~~~~~~~~~~~l~~L~~~~~~~lf~~ 325 (1074)
+....|++.+|++|.|.. ..+-+.+ +|.-..|.-|+| ||.++.. ........++.+++|+.++-.+++.+
T Consensus 98 ~~~~~gr~tiLflDEIHRfnK~QQD~l---Lp~vE~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~~di~~~l~r 174 (436)
T COG2256 98 KNRLLGRRTILFLDEIHRFNKAQQDAL---LPHVENGTIILIGATTENPSFELNPALLSRARVFELKPLSSEDIKKLLKR 174 (436)
T ss_pred HHHhcCCceEEEEehhhhcChhhhhhh---hhhhcCCeEEEEeccCCCCCeeecHHHhhhhheeeeecCCHHHHHHHHHH
Confidence 222248999999999974 3344433 333456777776 7777654 22234457999999999999999988
Q ss_pred hcCCCC-C----Cc-hhHHHHHHHHHHhCCCh
Q 001457 326 KAGLPE-G----TK-AFDRAAEEVVRQCGKLP 351 (1074)
Q Consensus 326 ~a~~~~-~----~~-~~~~~~~~i~~~c~glP 351 (1074)
.+-+.. . .. -.++.-..|+..++|=-
T Consensus 175 a~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~ 206 (436)
T COG2256 175 ALLDEERGLGGQIIVLDEEALDYLVRLSNGDA 206 (436)
T ss_pred HHhhhhcCCCcccccCCHHHHHHHHHhcCchH
Confidence 553111 1 11 23456777888888854
No 43
>PRK06893 DNA replication initiation factor; Validated
Probab=98.65 E-value=2.2e-07 Score=97.09 Aligned_cols=148 Identities=18% Similarity=0.281 Sum_probs=94.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhh-cCCCCeEEEEEecCCcCHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHccCeE
Q 001457 183 INIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKRVQDEIARFLNTELEGDVEVLRAAFLSERLKRQKRV 261 (1074)
Q Consensus 183 ~~vi~I~G~gG~GKTtLa~~v~~~-~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~ 261 (1074)
.+.+.++|++|+|||+||+.+++. ......+.|+++.... .. ...+.+.+. +.-
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~---~~--------------------~~~~~~~~~--~~d 93 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQ---YF--------------------SPAVLENLE--QQD 93 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhh---hh--------------------hHHHHhhcc--cCC
Confidence 467899999999999999999998 3334456777764210 00 001122232 345
Q ss_pred EEEEcCcccc---ccccc-cccCCCCC-CCCeEEEEecCC----------hhHHhhccCCCeEeCCCCCHHHHHHHHHHh
Q 001457 262 LIILDDLWGK---LDLAV-VGIPYGEE-HKGCKIILTSRF----------KEVCDEMESTNYVQVEELTDEDRLILFKKK 326 (1074)
Q Consensus 262 LlVlDdv~~~---~~~~~-~~~~~~~~-~~gs~iivTTR~----------~~v~~~~~~~~~~~l~~L~~~~~~~lf~~~ 326 (1074)
+||+||+|.. ..|+. +...+... ..|..+||+|.+ +++...+.....++++++++++.++++++.
T Consensus 94 lLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~ 173 (229)
T PRK06893 94 LVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRN 173 (229)
T ss_pred EEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHH
Confidence 8999999963 34542 21112211 235566554443 355666666678999999999999999988
Q ss_pred cCCCCCCchhHHHHHHHHHHhCCChHHHHH
Q 001457 327 AGLPEGTKAFDRAAEEVVRQCGKLPNAIVI 356 (1074)
Q Consensus 327 a~~~~~~~~~~~~~~~i~~~c~glPLai~~ 356 (1074)
+.... ..--+++..-|++++.|-.-++..
T Consensus 174 a~~~~-l~l~~~v~~~L~~~~~~d~r~l~~ 202 (229)
T PRK06893 174 AYQRG-IELSDEVANFLLKRLDRDMHTLFD 202 (229)
T ss_pred HHHcC-CCCCHHHHHHHHHhccCCHHHHHH
Confidence 86221 233457788888888876644443
No 44
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.61 E-value=1.4e-08 Score=108.07 Aligned_cols=206 Identities=24% Similarity=0.267 Sum_probs=135.9
Q ss_pred cCCCcEEeeccCCcccCC---CCCCCCCccEEEccCCCCCCCC--hhHHhcCCCccEEEecCCccCCCCCCc--cCCccC
Q 001457 508 LQNCEKLSLMDGNVTALP---DQPKCPRLTTLFLQNNPFADIP--NAFFEHTREIKNLDLSSTNISSLAPSL--PCLEKL 580 (1074)
Q Consensus 508 ~~~~~~L~l~~~~~~~l~---~~~~~~~Lr~L~l~~~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~lp~~i--~~l~~L 580 (1074)
+++++.+++.++.+...+ ....|+++|.|+|++|-+.... ..+...+++|+.|+++.|.+.....+. ..+++|
T Consensus 120 ~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~l 199 (505)
T KOG3207|consen 120 LKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHL 199 (505)
T ss_pred HHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhh
Confidence 567788888877776555 2367899999999998765542 234578999999999999877554432 467899
Q ss_pred CeeeccCCCCCC---CccccCCCCccEEEeeCCC-CcccCccccCCCCCCEEeCCCCcCCCCcChhhhcCCCCcCEEEcc
Q 001457 581 RSLHLENTHLND---ASLIREFGELEVLILKGSR-IVELPNGIGTVSNLKLLDLSNNLFLQVIPPNVISKLSQLEELYVG 656 (1074)
Q Consensus 581 r~L~L~~~~l~~---~~~i~~l~~L~~L~L~~~~-i~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~L~~L~~L~l~ 656 (1074)
+.|.|+.|.++. ......+++|+.|+|.+|. +..--.+...++.|+.|||++|++...-....++.++.|..|+++
T Consensus 200 K~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls 279 (505)
T KOG3207|consen 200 KQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLS 279 (505)
T ss_pred heEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhcc
Confidence 999999999886 4455678999999999984 333333445678899999999886543211227888888888887
Q ss_pred CCcCCccccccccCCCCCccccccCcCCCEEEEeecCccccc-cCcCCCCCCccEEEEEecC
Q 001457 657 NSFGDWEVEETANGQNARFSEVASLTRLTVLYIHVSNTKVLS-VDFDGPWTNLKRFRVCVND 717 (1074)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~ 717 (1074)
.|... .+.........-...+.+|+.|.+..|.....+ .......++|+.|.+..+.
T Consensus 280 ~tgi~----si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ 337 (505)
T KOG3207|consen 280 STGIA----SIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNY 337 (505)
T ss_pred ccCcc----hhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccc
Confidence 65211 000011111122346778888888877654332 1223344566666555543
No 45
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.54 E-value=6.5e-08 Score=111.43 Aligned_cols=173 Identities=32% Similarity=0.436 Sum_probs=113.4
Q ss_pred CCCCCccEEEccCCCCCCCChhHHhcCC-CccEEEecCCccCCCCCCccCCccCCeeeccCCCCCC-CccccCCCCccEE
Q 001457 528 PKCPRLTTLFLQNNPFADIPNAFFEHTR-EIKNLDLSSTNISSLAPSLPCLEKLRSLHLENTHLND-ASLIREFGELEVL 605 (1074)
Q Consensus 528 ~~~~~Lr~L~l~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~lp~~i~~l~~Lr~L~L~~~~l~~-~~~i~~l~~L~~L 605 (1074)
...+.+..|.+.++.+..+++.. ..+. +|+.|++++|.+..+|..+..+++|+.|++++|++.+ +...+.+.+|+.|
T Consensus 113 ~~~~~l~~L~l~~n~i~~i~~~~-~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L 191 (394)
T COG4886 113 LELTNLTSLDLDNNNITDIPPLI-GLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNL 191 (394)
T ss_pred hcccceeEEecCCcccccCcccc-ccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhhe
Confidence 34456777777777777776643 2332 6777777777777777777777777777777777777 5555577777777
Q ss_pred EeeCCCCcccCccccCCCCCCEEeCCCCcCCCCcChhhhcCCCCcCEEEccCCcCCccccccccCCCCCccccccCcCCC
Q 001457 606 ILKGSRIVELPNGIGTVSNLKLLDLSNNLFLQVIPPNVISKLSQLEELYVGNSFGDWEVEETANGQNARFSEVASLTRLT 685 (1074)
Q Consensus 606 ~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~ 685 (1074)
+++++.+..+|..+..+.+|+.|.+++|..... +.. +.++.++..|.+.++.. ......++.+..|+
T Consensus 192 ~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~-~~~-~~~~~~l~~l~l~~n~~-----------~~~~~~~~~l~~l~ 258 (394)
T COG4886 192 DLSGNKISDLPPEIELLSALEELDLSNNSIIEL-LSS-LSNLKNLSGLELSNNKL-----------EDLPESIGNLSNLE 258 (394)
T ss_pred eccCCccccCchhhhhhhhhhhhhhcCCcceec-chh-hhhcccccccccCCcee-----------eeccchhccccccc
Confidence 777777777777766677777777777743332 222 66677776666554421 11134456677777
Q ss_pred EEEEeecCccccccCcCCCCCCccEEEEEec
Q 001457 686 VLYIHVSNTKVLSVDFDGPWTNLKRFRVCVN 716 (1074)
Q Consensus 686 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 716 (1074)
.|+++.+....++. ++...+++.|++..+
T Consensus 259 ~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n 287 (394)
T COG4886 259 TLDLSNNQISSISS--LGSLTNLRELDLSGN 287 (394)
T ss_pred eecccccccccccc--ccccCccCEEeccCc
Confidence 77777776655544 555666777766554
No 46
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.54 E-value=1.1e-08 Score=103.16 Aligned_cols=129 Identities=24% Similarity=0.303 Sum_probs=91.4
Q ss_pred CCCccEEEecCCccCCCCCCccCCccCCeeeccCCCCCCCccccCCCCccEEEeeCCCCcccCccccCCCCCCEEeCCCC
Q 001457 554 TREIKNLDLSSTNISSLAPSLPCLEKLRSLHLENTHLNDASLIREFGELEVLILKGSRIVELPNGIGTVSNLKLLDLSNN 633 (1074)
Q Consensus 554 l~~L~~L~l~~~~~~~lp~~i~~l~~Lr~L~L~~~~l~~~~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~ 633 (1074)
.+.|..||||+|.|+.+-++..-++.+|.|++++|.|.....+..|++|+.|||++|.+.++..+-.+|.|.+.|.+++|
T Consensus 283 Wq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N 362 (490)
T KOG1259|consen 283 WQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQN 362 (490)
T ss_pred HhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhh
Confidence 45677888888888888777777888888888888877766677788888888888877777666667778888888887
Q ss_pred cCCCCcChhhhcCCCCcCEEEccCCcCCccccccccCCCCCccccccCcCCCEEEEeecCc
Q 001457 634 LFLQVIPPNVISKLSQLEELYVGNSFGDWEVEETANGQNARFSEVASLTRLTVLYIHVSNT 694 (1074)
Q Consensus 634 ~~~~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 694 (1074)
.+ ..+. + +++|-+|..|++.+|.. + .-.....+++++.|+++.+..|..
T Consensus 363 ~i-E~LS-G-L~KLYSLvnLDl~~N~I----e-----~ldeV~~IG~LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 363 KI-ETLS-G-LRKLYSLVNLDLSSNQI----E-----ELDEVNHIGNLPCLETLRLTGNPL 411 (490)
T ss_pred hH-hhhh-h-hHhhhhheeccccccch----h-----hHHHhcccccccHHHHHhhcCCCc
Confidence 53 4432 2 67777788888776521 1 112234567777777777766553
No 47
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.51 E-value=1.5e-06 Score=99.76 Aligned_cols=174 Identities=14% Similarity=0.204 Sum_probs=101.9
Q ss_pred ccCcchHHHHHH---HHHHHhcCCCceeEEEEEcCCCCcHHHHHHHHHhh-cCCCCeEEEEEecCCcCHHHHHHHHHHHh
Q 001457 160 VPLKSALEVIKS---VMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKRVQDEIARFL 235 (1074)
Q Consensus 160 ~~~~~r~~~~~~---l~~~l~~~~~~~~vi~I~G~gG~GKTtLa~~v~~~-~~~F~~~~wv~vs~~~~~~~~~~~i~~~l 235 (1074)
..+.|++..+.. +..++..+. ...+.++|++|+||||+|+.+++. ...| +.++.......-.+++++.
T Consensus 12 ~d~vGq~~~v~~~~~L~~~i~~~~--~~~ilL~GppGtGKTtLA~~ia~~~~~~~-----~~l~a~~~~~~~ir~ii~~- 83 (413)
T PRK13342 12 DEVVGQEHLLGPGKPLRRMIEAGR--LSSMILWGPPGTGKTTLARIIAGATDAPF-----EALSAVTSGVKDLREVIEE- 83 (413)
T ss_pred HHhcCcHHHhCcchHHHHHHHcCC--CceEEEECCCCCCHHHHHHHHHHHhCCCE-----EEEecccccHHHHHHHHHH-
Confidence 334555555443 556665555 667889999999999999999988 4443 3332221111112222221
Q ss_pred ccCCCcchHHHHHHHHHHHHHccCeEEEEEcCcccc--ccccccccCCCCCCCCeEEEE--ecCChhH--H-hhccCCCe
Q 001457 236 NTELEGDVEVLRAAFLSERLKRQKRVLIILDDLWGK--LDLAVVGIPYGEEHKGCKIIL--TSRFKEV--C-DEMESTNY 308 (1074)
Q Consensus 236 ~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~--~~~~~~~~~~~~~~~gs~iiv--TTR~~~v--~-~~~~~~~~ 308 (1074)
.......+++.+|++|+++.- .+.+.+...+. .|..++| ||.+... . ........
T Consensus 84 ---------------~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le---~~~iilI~att~n~~~~l~~aL~SR~~~ 145 (413)
T PRK13342 84 ---------------ARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVE---DGTITLIGATTENPSFEVNPALLSRAQV 145 (413)
T ss_pred ---------------HHHhhhcCCceEEEEechhhhCHHHHHHHHHHhh---cCcEEEEEeCCCChhhhccHHHhcccee
Confidence 111122368899999999864 33333332222 2444444 3444322 1 11222368
Q ss_pred EeCCCCCHHHHHHHHHHhcCCC-CCC-chhHHHHHHHHHHhCCChHHHHHHHH
Q 001457 309 VQVEELTDEDRLILFKKKAGLP-EGT-KAFDRAAEEVVRQCGKLPNAIVIIGT 359 (1074)
Q Consensus 309 ~~l~~L~~~~~~~lf~~~a~~~-~~~-~~~~~~~~~i~~~c~glPLai~~~~~ 359 (1074)
+++++++.++.+.++.+.+... ... +-..+....|++.|+|-|..+..+..
T Consensus 146 ~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~Le 198 (413)
T PRK13342 146 FELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLLE 198 (413)
T ss_pred eEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHHH
Confidence 8999999999999998876421 111 23356788899999998876554433
No 48
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.48 E-value=2.1e-08 Score=106.72 Aligned_cols=130 Identities=20% Similarity=0.255 Sum_probs=84.6
Q ss_pred CCCCCccEEEccCCCCCCCCh-hHHhcCCCccEEEecCCccCCC---CCCccCCccCCeeeccCCCCCCC---ccccCCC
Q 001457 528 PKCPRLTTLFLQNNPFADIPN-AFFEHTREIKNLDLSSTNISSL---APSLPCLEKLRSLHLENTHLNDA---SLIREFG 600 (1074)
Q Consensus 528 ~~~~~Lr~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~l---p~~i~~l~~Lr~L~L~~~~l~~~---~~i~~l~ 600 (1074)
.++++||...|.++.+...+. .....|++++.|||++|-+.+. -.-+..|++|+.|+|+.|++..| ..-..+.
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 567888888888888666553 3456788888888888866533 23456788888888888887652 1223567
Q ss_pred CccEEEeeCCCCc--ccCccccCCCCCCEEeCCCCcCCCCcChhhhcCCCCcCEEEccCC
Q 001457 601 ELEVLILKGSRIV--ELPNGIGTVSNLKLLDLSNNLFLQVIPPNVISKLSQLEELYVGNS 658 (1074)
Q Consensus 601 ~L~~L~L~~~~i~--~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~L~~L~~L~l~~~ 658 (1074)
+|+.|.|+.|+++ .+-.-...+++|..|++..|......... ...++.|++|++++|
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~-~~i~~~L~~LdLs~N 256 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATS-TKILQTLQELDLSNN 256 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecch-hhhhhHHhhccccCC
Confidence 7888888888776 22223456677788888777321111111 334566777777665
No 49
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.43 E-value=1.7e-07 Score=107.89 Aligned_cols=175 Identities=31% Similarity=0.403 Sum_probs=143.8
Q ss_pred cCCCcEEeeccCCcccCCCCCCCC--CccEEEccCCCCCCCChhHHhcCCCccEEEecCCccCCCCCCccCCccCCeeec
Q 001457 508 LQNCEKLSLMDGNVTALPDQPKCP--RLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSLAPSLPCLEKLRSLHL 585 (1074)
Q Consensus 508 ~~~~~~L~l~~~~~~~l~~~~~~~--~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~Lr~L~L 585 (1074)
++.+..+.+.++.+..++...... +|+.|++++|.+..++.. ...++.|+.|++++|.+..+|...+.+++|+.|++
T Consensus 115 ~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~-~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~l 193 (394)
T COG4886 115 LTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSP-LRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDL 193 (394)
T ss_pred ccceeEEecCCcccccCccccccchhhcccccccccchhhhhhh-hhccccccccccCCchhhhhhhhhhhhhhhhheec
Confidence 456888999999999988865554 899999999999888633 47899999999999999999998888999999999
Q ss_pred cCCCCCC-CccccCCCCccEEEeeCCCCcccCccccCCCCCCEEeCCCCcCCCCcChhhhcCCCCcCEEEccCCcCCccc
Q 001457 586 ENTHLND-ASLIREFGELEVLILKGSRIVELPNGIGTVSNLKLLDLSNNLFLQVIPPNVISKLSQLEELYVGNSFGDWEV 664 (1074)
Q Consensus 586 ~~~~l~~-~~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~L~~L~~L~l~~~~~~~~~ 664 (1074)
++|.++. |..+..+.+|++|.++++.+...+..+.++.++..|.+.++... .++. .++.+++|++|++++|..
T Consensus 194 s~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~-~~~~-~~~~l~~l~~L~~s~n~i---- 267 (394)
T COG4886 194 SGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLE-DLPE-SIGNLSNLETLDLSNNQI---- 267 (394)
T ss_pred cCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceee-eccc-hhccccccceeccccccc----
Confidence 9999999 77777888899999999987788888999999999998888643 3233 388999999999988732
Q ss_pred cccccCCCCCccccccCcCCCEEEEeecCcccc
Q 001457 665 EETANGQNARFSEVASLTRLTVLYIHVSNTKVL 697 (1074)
Q Consensus 665 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 697 (1074)
..+..++.+.+|+.|+++++.....
T Consensus 268 --------~~i~~~~~~~~l~~L~~s~n~~~~~ 292 (394)
T COG4886 268 --------SSISSLGSLTNLRELDLSGNSLSNA 292 (394)
T ss_pred --------cccccccccCccCEEeccCcccccc
Confidence 2223378889999999988765433
No 50
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.43 E-value=4.5e-05 Score=89.73 Aligned_cols=197 Identities=16% Similarity=0.119 Sum_probs=116.3
Q ss_pred CcchHHHHHHHHHHHhc---CCCceeEEEEEcCCCCcHHHHHHHHHhh------cCCCC--eEEEEEecCCcCHHHHHHH
Q 001457 162 LKSALEVIKSVMKLLKD---NSISINIIGVYGSGGIGKTTLMKQVMKQ------EIPFD--KVIFVRVTQTPDVKRVQDE 230 (1074)
Q Consensus 162 ~~~r~~~~~~l~~~l~~---~~~~~~vi~I~G~gG~GKTtLa~~v~~~------~~~F~--~~~wv~vs~~~~~~~~~~~ 230 (1074)
+.+|++++++|...|.+ +.....++.|+|++|+|||+.++.|.+. ..... .+++|++..-.+...++..
T Consensus 757 LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIYqv 836 (1164)
T PTZ00112 757 LPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAYQV 836 (1164)
T ss_pred CCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHHHH
Confidence 56899999998887754 2222467889999999999999999876 12222 3567777766778888888
Q ss_pred HHHHhccCCC--cchHHHHHHHHHHHHH--ccCeEEEEEcCccccc-----cccccccCCCCCCCCeEEEE--ecCChhH
Q 001457 231 IARFLNTELE--GDVEVLRAAFLSERLK--RQKRVLIILDDLWGKL-----DLAVVGIPYGEEHKGCKIIL--TSRFKEV 299 (1074)
Q Consensus 231 i~~~l~~~~~--~~~~~~~~~~l~~~l~--~~k~~LlVlDdv~~~~-----~~~~~~~~~~~~~~gs~iiv--TTR~~~v 299 (1074)
|.+++..... +.........+...+. .+...+||||+|+.-. .+..+... ....+++|+| +|..-+.
T Consensus 837 I~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~--~~~s~SKLiLIGISNdlDL 914 (1164)
T PTZ00112 837 LYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDW--PTKINSKLVLIAISNTMDL 914 (1164)
T ss_pred HHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHH--hhccCCeEEEEEecCchhc
Confidence 8888844332 2222334445555442 1234689999997432 12111111 1123556555 3332221
Q ss_pred --------HhhccCCCeEeCCCCCHHHHHHHHHHhcCCC---CCCchhHHHHHHHHHHhCCChHHHHHHHHHH
Q 001457 300 --------CDEMESTNYVQVEELTDEDRLILFKKKAGLP---EGTKAFDRAAEEVVRQCGKLPNAIVIIGTAL 361 (1074)
Q Consensus 300 --------~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~---~~~~~~~~~~~~i~~~c~glPLai~~~~~~l 361 (1074)
...++ ...+..++.+.++-.+++..++... .....++-+|+.++..-|-.=.||.++-.+.
T Consensus 915 perLdPRLRSRLg-~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAg 986 (1164)
T PTZ00112 915 PERLIPRCRSRLA-FGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAF 986 (1164)
T ss_pred chhhhhhhhhccc-cccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHH
Confidence 11222 1246779999999999998887621 1223344444544444444555665555444
No 51
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.43 E-value=6.1e-07 Score=93.75 Aligned_cols=89 Identities=17% Similarity=0.166 Sum_probs=62.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhh--cCCCCeEEEEEecCC--cCHHHHHHHHHH-----HhccCCCcchH--HHHHHHH
Q 001457 183 INIIGVYGSGGIGKTTLMKQVMKQ--EIPFDKVIFVRVTQT--PDVKRVQDEIAR-----FLNTELEGDVE--VLRAAFL 251 (1074)
Q Consensus 183 ~~vi~I~G~gG~GKTtLa~~v~~~--~~~F~~~~wv~vs~~--~~~~~~~~~i~~-----~l~~~~~~~~~--~~~~~~l 251 (1074)
-..++|+|++|+|||||++.+++. ..+|+.++|+.+++. +++.++++.+.. +++........ .......
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~~a 95 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLEKA 95 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHHHH
Confidence 357899999999999999999999 558999999998877 799999999933 33321100000 1111222
Q ss_pred HHHHHccCeEEEEEcCcccc
Q 001457 252 SERLKRQKRVLIILDDLWGK 271 (1074)
Q Consensus 252 ~~~l~~~k~~LlVlDdv~~~ 271 (1074)
..+...+++.++++|++..-
T Consensus 96 ~~~~~~G~~vll~iDei~r~ 115 (249)
T cd01128 96 KRLVEHGKDVVILLDSITRL 115 (249)
T ss_pred HHHHHCCCCEEEEEECHHHh
Confidence 22333589999999999653
No 52
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.42 E-value=1.6e-06 Score=91.38 Aligned_cols=167 Identities=16% Similarity=0.259 Sum_probs=99.6
Q ss_pred chHHHHHHHHHHHhcCCCceeEEEEEcCCCCcHHHHHHHHHhh-cCCCCeEEEEEecCCcCHHHHHHHHHHHhccCCCcc
Q 001457 164 SALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKRVQDEIARFLNTELEGD 242 (1074)
Q Consensus 164 ~r~~~~~~l~~~l~~~~~~~~vi~I~G~gG~GKTtLa~~v~~~-~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~ 242 (1074)
+....++.+-.++.... .+.|.|+|.+|+|||++|+.+++. .......+|++++.-.+. .
T Consensus 21 ~~~~~~~~l~~~~~~~~--~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~~------~----------- 81 (226)
T TIGR03420 21 GNAELLAALRQLAAGKG--DRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQA------D----------- 81 (226)
T ss_pred CcHHHHHHHHHHHhcCC--CCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHHh------H-----------
Confidence 34555666666654433 678999999999999999999988 444445667665432110 0
Q ss_pred hHHHHHHHHHHHHHccCeEEEEEcCccccc---ccc-ccccCCCC-CCCCeEEEEecCChh---------HHhhccCCCe
Q 001457 243 VEVLRAAFLSERLKRQKRVLIILDDLWGKL---DLA-VVGIPYGE-EHKGCKIILTSRFKE---------VCDEMESTNY 308 (1074)
Q Consensus 243 ~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~---~~~-~~~~~~~~-~~~gs~iivTTR~~~---------v~~~~~~~~~ 308 (1074)
..+.+.+. +.-+||+||++... .|. .+...+.. ...+.+||+||+... +...+.....
T Consensus 82 ------~~~~~~~~--~~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~~~~ 153 (226)
T TIGR03420 82 ------PEVLEGLE--QADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWGLV 153 (226)
T ss_pred ------HHHHhhcc--cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhcCee
Confidence 01112222 23489999998543 222 22221111 122457899887532 2223323457
Q ss_pred EeCCCCCHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhCCChHHHHHHH
Q 001457 309 VQVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLPNAIVIIG 358 (1074)
Q Consensus 309 ~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~i~~~c~glPLai~~~~ 358 (1074)
+++.++++++-..++...+... ..+--.+..+.|++.+.|.|..+.-+.
T Consensus 154 i~l~~l~~~e~~~~l~~~~~~~-~~~~~~~~l~~L~~~~~gn~r~L~~~l 202 (226)
T TIGR03420 154 FQLPPLSDEEKIAALQSRAARR-GLQLPDEVADYLLRHGSRDMGSLMALL 202 (226)
T ss_pred EecCCCCHHHHHHHHHHHHHHc-CCCCCHHHHHHHHHhccCCHHHHHHHH
Confidence 8999999999999887754311 112234566777778888886655543
No 53
>PF13173 AAA_14: AAA domain
Probab=98.41 E-value=3.7e-07 Score=86.01 Aligned_cols=119 Identities=21% Similarity=0.259 Sum_probs=79.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhh-cCCCCeEEEEEecCCcCHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHccCeE
Q 001457 183 INIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKRVQDEIARFLNTELEGDVEVLRAAFLSERLKRQKRV 261 (1074)
Q Consensus 183 ~~vi~I~G~gG~GKTtLa~~v~~~-~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~ 261 (1074)
.+++.|.|+-|+||||++++++.+ . ....++|++..+.........+ ..+.+.+... .++.
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~-~~~~~~yi~~~~~~~~~~~~~~----------------~~~~~~~~~~-~~~~ 63 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL-PPENILYINFDDPRDRRLADPD----------------LLEYFLELIK-PGKK 63 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc-ccccceeeccCCHHHHHHhhhh----------------hHHHHHHhhc-cCCc
Confidence 468999999999999999999987 4 4456777776554321110000 1222333322 3778
Q ss_pred EEEEcCccccccccccccCCCCCCCCeEEEEecCChhHHhhc------cCCCeEeCCCCCHHHH
Q 001457 262 LIILDDLWGKLDLAVVGIPYGEEHKGCKIILTSRFKEVCDEM------ESTNYVQVEELTDEDR 319 (1074)
Q Consensus 262 LlVlDdv~~~~~~~~~~~~~~~~~~gs~iivTTR~~~v~~~~------~~~~~~~l~~L~~~~~ 319 (1074)
+|++|+|....+|......+.+..+..+|++|+.+......- +....+++.||+..|.
T Consensus 64 ~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 64 YIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred EEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 899999999888876655555555678999999887765321 1224688999998774
No 54
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.34 E-value=1.1e-06 Score=83.57 Aligned_cols=112 Identities=23% Similarity=0.316 Sum_probs=79.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhh-cC-----CCCeEEEEEecCCcCHHHHHHHHHHHhccCCCc-chHHHHHHHHHHHH
Q 001457 183 INIIGVYGSGGIGKTTLMKQVMKQ-EI-----PFDKVIFVRVTQTPDVKRVQDEIARFLNTELEG-DVEVLRAAFLSERL 255 (1074)
Q Consensus 183 ~~vi~I~G~gG~GKTtLa~~v~~~-~~-----~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~l~~~l 255 (1074)
-+++.|+|.+|+|||++++.+.+. .. .-..++|+.+....+...+...|+.+++..... .........+.+.+
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 568999999999999999999988 22 134667999988889999999999999987666 44556667888888
Q ss_pred HccCeEEEEEcCcccc-c--cccccccCCCCCCCCeEEEEecCC
Q 001457 256 KRQKRVLIILDDLWGK-L--DLAVVGIPYGEEHKGCKIILTSRF 296 (1074)
Q Consensus 256 ~~~k~~LlVlDdv~~~-~--~~~~~~~~~~~~~~gs~iivTTR~ 296 (1074)
...+..+||+|+++.- . .++.+..-. + ..+.+||+.-+.
T Consensus 84 ~~~~~~~lviDe~~~l~~~~~l~~l~~l~-~-~~~~~vvl~G~~ 125 (131)
T PF13401_consen 84 DRRRVVLLVIDEADHLFSDEFLEFLRSLL-N-ESNIKVVLVGTP 125 (131)
T ss_dssp HHCTEEEEEEETTHHHHTHHHHHHHHHHT-C-SCBEEEEEEESS
T ss_pred HhcCCeEEEEeChHhcCCHHHHHHHHHHH-h-CCCCeEEEEECh
Confidence 7666679999998764 2 233332222 1 556777777654
No 55
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.33 E-value=2.7e-05 Score=91.23 Aligned_cols=183 Identities=13% Similarity=0.116 Sum_probs=108.5
Q ss_pred CCCcccCcchHHHHHHHHHHHhcCCCceeEEEEEcCCCCcHHHHHHHHHhh---cCC-------------------CCeE
Q 001457 156 TPEFVPLKSALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ---EIP-------------------FDKV 213 (1074)
Q Consensus 156 ~~~~~~~~~r~~~~~~l~~~l~~~~~~~~vi~I~G~gG~GKTtLa~~v~~~---~~~-------------------F~~~ 213 (1074)
...|..+.|.+..++.|..++..+. -.+.+.++|..|+||||+|+.+.+. ... |..+
T Consensus 12 PqtFdEVIGQe~Vv~~L~~aL~~gR-L~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~Dv 90 (830)
T PRK07003 12 PKDFASLVGQEHVVRALTHALDGGR-LHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDY 90 (830)
T ss_pred CCcHHHHcCcHHHHHHHHHHHhcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceE
Confidence 4455567788888888888887654 1345679999999999999988876 111 1112
Q ss_pred EEEEecCCcCHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHccCeEEEEEcCcccc--ccccccccCCCCCCCCeEEE
Q 001457 214 IFVRVTQTPDVKRVQDEIARFLNTELEGDVEVLRAAFLSERLKRQKRVLIILDDLWGK--LDLAVVGIPYGEEHKGCKII 291 (1074)
Q Consensus 214 ~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~--~~~~~~~~~~~~~~~gs~ii 291 (1074)
++++-+....+.+ ++++++. +...-..++.-++|+|++..- ..++.+...+.......++|
T Consensus 91 iEIDAas~rgVDd-IReLIe~----------------a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FI 153 (830)
T PRK07003 91 VEMDAASNRGVDE-MAALLER----------------AVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFI 153 (830)
T ss_pred EEecccccccHHH-HHHHHHH----------------HHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEE
Confidence 2222221111111 1111111 110011245668899999864 33555543333334467877
Q ss_pred EecCChhH-Hhh-ccCCCeEeCCCCCHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhCCCh-HHHHHH
Q 001457 292 LTSRFKEV-CDE-MESTNYVQVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLP-NAIVII 357 (1074)
Q Consensus 292 vTTR~~~v-~~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~i~~~c~glP-Lai~~~ 357 (1074)
+||.+.+- ... ......++++.++.++..+.+.+.+.... ..-..+....|++.++|-. -|+..+
T Consensus 154 LaTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~Eg-I~id~eAL~lIA~~A~GsmRdALsLL 221 (830)
T PRK07003 154 LATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEER-IAFEPQALRLLARAAQGSMRDALSLT 221 (830)
T ss_pred EEECChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 77766543 222 22236899999999999999988775221 2234567788999998855 455543
No 56
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.33 E-value=1.4e-06 Score=94.38 Aligned_cols=87 Identities=14% Similarity=0.115 Sum_probs=60.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh--cCCCCeEEEEEecCCc--CHHHHHHHHHHHhccCCCcchHHHH-------HHHHH
Q 001457 184 NIIGVYGSGGIGKTTLMKQVMKQ--EIPFDKVIFVRVTQTP--DVKRVQDEIARFLNTELEGDVEVLR-------AAFLS 252 (1074)
Q Consensus 184 ~vi~I~G~gG~GKTtLa~~v~~~--~~~F~~~~wv~vs~~~--~~~~~~~~i~~~l~~~~~~~~~~~~-------~~~l~ 252 (1074)
.-.+|+|++|+||||||++||+. .++|+.++||.+++.. ++.+++++|...+-......+.... ...-.
T Consensus 170 QR~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~Ae 249 (416)
T PRK09376 170 QRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEKAK 249 (416)
T ss_pred ceEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 35789999999999999999999 5689999999999887 7888888886322211111111111 11111
Q ss_pred HHHHccCeEEEEEcCccc
Q 001457 253 ERLKRQKRVLIILDDLWG 270 (1074)
Q Consensus 253 ~~l~~~k~~LlVlDdv~~ 270 (1074)
.....|++++|++|++..
T Consensus 250 ~~~e~G~dVlL~iDsItR 267 (416)
T PRK09376 250 RLVEHGKDVVILLDSITR 267 (416)
T ss_pred HHHHcCCCEEEEEEChHH
Confidence 222358999999999864
No 57
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.32 E-value=1.4e-05 Score=88.25 Aligned_cols=172 Identities=16% Similarity=0.161 Sum_probs=108.1
Q ss_pred cCcchHHHHHHHHHHHhcCCCceeEEEEEcCCCCcHHHHHHHHHhh-------cCCCCeEEEEEe-cCCcCHHHHHHHHH
Q 001457 161 PLKSALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ-------EIPFDKVIFVRV-TQTPDVKRVQDEIA 232 (1074)
Q Consensus 161 ~~~~r~~~~~~l~~~l~~~~~~~~vi~I~G~gG~GKTtLa~~v~~~-------~~~F~~~~wv~v-s~~~~~~~~~~~i~ 232 (1074)
.+.|.+..++.+..++..+. -.+...++|+.|+||||+|+.++.. ..|+|...|... +....+.+ .+++.
T Consensus 5 ~i~g~~~~~~~l~~~~~~~~-~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~-ir~~~ 82 (313)
T PRK05564 5 TIIGHENIKNRIKNSIIKNR-FSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD-IRNII 82 (313)
T ss_pred hccCcHHHHHHHHHHHHcCC-CCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-HHHHH
Confidence 34567777788888886654 2457789999999999999999885 346676666542 22233333 22233
Q ss_pred HHhccCCCcchHHHHHHHHHHHHHccCeEEEEEcCc--cccccccccccCCCCCCCCeEEEEecCChhHH-hh-ccCCCe
Q 001457 233 RFLNTELEGDVEVLRAAFLSERLKRQKRVLIILDDL--WGKLDLAVVGIPYGEEHKGCKIILTSRFKEVC-DE-MESTNY 308 (1074)
Q Consensus 233 ~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv--~~~~~~~~~~~~~~~~~~gs~iivTTR~~~v~-~~-~~~~~~ 308 (1074)
+.+... -. .+++-++|+|++ .+...++.+...+.....++.+|++|.+.+.. .. ......
T Consensus 83 ~~~~~~---------------p~-~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc~~ 146 (313)
T PRK05564 83 EEVNKK---------------PY-EGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQI 146 (313)
T ss_pred HHHhcC---------------cc-cCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhcee
Confidence 322210 01 134455556655 45566776666665555688898888765432 21 222368
Q ss_pred EeCCCCCHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhCCChHHHH
Q 001457 309 VQVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLPNAIV 355 (1074)
Q Consensus 309 ~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~i~~~c~glPLai~ 355 (1074)
+++.++++++....+.+.... ...+.+..++..++|.|..+.
T Consensus 147 ~~~~~~~~~~~~~~l~~~~~~-----~~~~~~~~l~~~~~g~~~~a~ 188 (313)
T PRK05564 147 YKLNRLSKEEIEKFISYKYND-----IKEEEKKSAIAFSDGIPGKVE 188 (313)
T ss_pred eeCCCcCHHHHHHHHHHHhcC-----CCHHHHHHHHHHcCCCHHHHH
Confidence 999999999998877665421 113446788999999986554
No 58
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.31 E-value=4.1e-07 Score=72.84 Aligned_cols=58 Identities=36% Similarity=0.604 Sum_probs=34.1
Q ss_pred CccEEEccCCCCCCCChhHHhcCCCccEEEecCCccCCCCC-CccCCccCCeeeccCCC
Q 001457 532 RLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSLAP-SLPCLEKLRSLHLENTH 589 (1074)
Q Consensus 532 ~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~Lr~L~L~~~~ 589 (1074)
+|++|++++|.+..+++..|.++++|++|++++|.++.+++ .+..+++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 45566666666556665556666666666666666655544 45555566666555554
No 59
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.30 E-value=2.3e-05 Score=78.31 Aligned_cols=171 Identities=16% Similarity=0.212 Sum_probs=87.4
Q ss_pred CcccCcchHHHHHH---HHHHHhcCCCceeEEEEEcCCCCcHHHHHHHHHhh-cCCCCeEEEEEecCCcCHHHHHHHHHH
Q 001457 158 EFVPLKSALEVIKS---VMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKRVQDEIAR 233 (1074)
Q Consensus 158 ~~~~~~~r~~~~~~---l~~~l~~~~~~~~vi~I~G~gG~GKTtLa~~v~~~-~~~F~~~~wv~vs~~~~~~~~~~~i~~ 233 (1074)
.+..+.|.++.+.. +++........+..+.+||++|+||||||+-+.+. ...|. +++.+.-....++ ..++.
T Consensus 22 ~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~---~~sg~~i~k~~dl-~~il~ 97 (233)
T PF05496_consen 22 SLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGVNFK---ITSGPAIEKAGDL-AAILT 97 (233)
T ss_dssp SCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT--EE---EEECCC--SCHHH-HHHHH
T ss_pred CHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCCCeE---eccchhhhhHHHH-HHHHH
Confidence 33344455554444 33443333445788999999999999999999999 65552 2222111111111 12222
Q ss_pred HhccCCCcchHHHHHHHHHHHHHccCeEEEEEcCcccc--cc-------ccc---------------cccCCCCCCCCeE
Q 001457 234 FLNTELEGDVEVLRAAFLSERLKRQKRVLIILDDLWGK--LD-------LAV---------------VGIPYGEEHKGCK 289 (1074)
Q Consensus 234 ~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~--~~-------~~~---------------~~~~~~~~~~gs~ 289 (1074)
.+ +++-+|.+|++..- .+ .++ +...++ +=+-
T Consensus 98 ~l----------------------~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~---~FTl 152 (233)
T PF05496_consen 98 NL----------------------KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLP---PFTL 152 (233)
T ss_dssp T------------------------TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE-------EE
T ss_pred hc----------------------CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCC---CceE
Confidence 22 13345555655421 00 011 111111 2345
Q ss_pred EEEecCChhHHhhccCCC--eEeCCCCCHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhCCChHHHHHHH
Q 001457 290 IILTSRFKEVCDEMESTN--YVQVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLPNAIVIIG 358 (1074)
Q Consensus 290 iivTTR~~~v~~~~~~~~--~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~i~~~c~glPLai~~~~ 358 (1074)
|=.|||...+........ +.+++..+.+|-.++..+.+.. -..+-.++.+.+|+++|.|-|--+.-+-
T Consensus 153 igATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~-l~i~i~~~~~~~Ia~rsrGtPRiAnrll 222 (233)
T PF05496_consen 153 IGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARI-LNIEIDEDAAEEIARRSRGTPRIANRLL 222 (233)
T ss_dssp EEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHC-TT-EE-HHHHHHHHHCTTTSHHHHHHHH
T ss_pred eeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHH-hCCCcCHHHHHHHHHhcCCChHHHHHHH
Confidence 667999877755544443 4589999999999999887751 2233446889999999999995444333
No 60
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.29 E-value=2.3e-08 Score=101.00 Aligned_cols=140 Identities=18% Similarity=0.158 Sum_probs=77.7
Q ss_pred cccceEEEecCCCccccccchhHhhhcCCCceecccccccceeeccchhhHhhhhhhccccccCCCCcccCCceEEEecc
Q 001457 853 KTLKLMKVKDCGKLRYLFSRTLAEGLGNLEDLSILKCDLMEEIVSVDEAEVEQGAAQERNVSSAPQPMFFPNLKKLLIGK 932 (1074)
Q Consensus 853 ~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~l~~l~l~~~~~~~~~~~L~~L~l~~ 932 (1074)
.+|+.|+++.|+.++......++.+|+.|.+|+|++|..-++...+.-. +--++|+.|+|++
T Consensus 234 ~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~------------------hise~l~~LNlsG 295 (419)
T KOG2120|consen 234 SNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVA------------------HISETLTQLNLSG 295 (419)
T ss_pred ccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHh------------------hhchhhhhhhhhh
Confidence 5677777777777776655556778888888888888766654322110 0115666666666
Q ss_pred cccccccc-cccccccccCccEEEEeeccCcceeecccchhhcccCcccccccccccccccccccccccCccccccCCCc
Q 001457 933 CNKMKRVL-SLTNAHNLKQLEELTVASCNHMERIITVSDEEKAAENKNVLPKLKILALEDLPELDSVYNGEIAALRWPSL 1011 (1074)
Q Consensus 933 C~~L~~~~-~~~~~~~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~i~~~~~~~~~~~~L 1011 (1074)
|..--... .......+|+|..|++++|..++.-. ...+..|+-|++|.++.|-.+.-- ..+.+...|+|
T Consensus 296 ~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~--------~~~~~kf~~L~~lSlsRCY~i~p~--~~~~l~s~psl 365 (419)
T KOG2120|consen 296 YRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDC--------FQEFFKFNYLQHLSLSRCYDIIPE--TLLELNSKPSL 365 (419)
T ss_pred hHhhhhhhHHHHHHHhCCceeeeccccccccCchH--------HHHHHhcchheeeehhhhcCCChH--HeeeeccCcce
Confidence 65421111 11113456667777777666554311 012345667777777766543211 11111133777
Q ss_pred cEEEEeCCC
Q 001457 1012 EELKVWDCP 1020 (1074)
Q Consensus 1012 ~~L~i~~C~ 1020 (1074)
.+|++.||-
T Consensus 366 ~yLdv~g~v 374 (419)
T KOG2120|consen 366 VYLDVFGCV 374 (419)
T ss_pred EEEEecccc
Confidence 777777764
No 61
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.28 E-value=5e-06 Score=80.92 Aligned_cols=121 Identities=17% Similarity=0.208 Sum_probs=70.5
Q ss_pred chHHHHHHHHHHHhcCCCceeEEEEEcCCCCcHHHHHHHHHhh-cCCCCeEEEEEecCCcCHHHHHHHHHHHhccCCCcc
Q 001457 164 SALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKRVQDEIARFLNTELEGD 242 (1074)
Q Consensus 164 ~r~~~~~~l~~~l~~~~~~~~vi~I~G~gG~GKTtLa~~v~~~-~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~ 242 (1074)
+++..+..+...+.... .+.+.|+|.+|+||||+|+.+++. ...-..++++...+..........+...
T Consensus 2 ~~~~~~~~i~~~~~~~~--~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-------- 71 (151)
T cd00009 2 GQEEAIEALREALELPP--PKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHF-------- 71 (151)
T ss_pred chHHHHHHHHHHHhCCC--CCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhh--------
Confidence 46677778877776644 568999999999999999999998 3323456677665543322221111100
Q ss_pred hHHHHHHHHHHHHHccCeEEEEEcCcccc-----ccccccccCCCC---CCCCeEEEEecCChh
Q 001457 243 VEVLRAAFLSERLKRQKRVLIILDDLWGK-----LDLAVVGIPYGE---EHKGCKIILTSRFKE 298 (1074)
Q Consensus 243 ~~~~~~~~l~~~l~~~k~~LlVlDdv~~~-----~~~~~~~~~~~~---~~~gs~iivTTR~~~ 298 (1074)
.......... ..+..++|+||++.. ..+..+...... ...+.+||+||....
T Consensus 72 ---~~~~~~~~~~-~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 ---LVRLLFELAE-KAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred ---hHhHHHHhhc-cCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 0000111111 357889999999853 222222112111 135788999988653
No 62
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.26 E-value=1e-05 Score=84.43 Aligned_cols=155 Identities=15% Similarity=0.194 Sum_probs=101.4
Q ss_pred HHhcCCCceeEEEEEcCCCCcHHHHHHHHHhh-cCCCCeEEEEEecCCcCHHHHHHHHHHHhccCCCcchHHHHHHHHHH
Q 001457 175 LLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKRVQDEIARFLNTELEGDVEVLRAAFLSE 253 (1074)
Q Consensus 175 ~l~~~~~~~~vi~I~G~gG~GKTtLa~~v~~~-~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~ 253 (1074)
.+..+. +.-+.+||++|+||||||+.+.+. +.+- ..||..|....-..-.++|+++... . .
T Consensus 156 ~ieq~~--ipSmIlWGppG~GKTtlArlia~tsk~~S--yrfvelSAt~a~t~dvR~ife~aq~-------------~-~ 217 (554)
T KOG2028|consen 156 LIEQNR--IPSMILWGPPGTGKTTLARLIASTSKKHS--YRFVELSATNAKTNDVRDIFEQAQN-------------E-K 217 (554)
T ss_pred HHHcCC--CCceEEecCCCCchHHHHHHHHhhcCCCc--eEEEEEeccccchHHHHHHHHHHHH-------------H-H
Confidence 334455 788889999999999999999988 4432 6678887665555555566554321 1 1
Q ss_pred HHHccCeEEEEEcCccc--cccccccccCCCCCCCCeEEEE--ecCChhH---HhhccCCCeEeCCCCCHHHHHHHHHHh
Q 001457 254 RLKRQKRVLIILDDLWG--KLDLAVVGIPYGEEHKGCKIIL--TSRFKEV---CDEMESTNYVQVEELTDEDRLILFKKK 326 (1074)
Q Consensus 254 ~l~~~k~~LlVlDdv~~--~~~~~~~~~~~~~~~~gs~iiv--TTR~~~v---~~~~~~~~~~~l~~L~~~~~~~lf~~~ 326 (1074)
.+ .++|.+|.+|.|.. ..+-+.+ +|...+|+-++| ||.+... +.......++.|+.|+.++-..++.+.
T Consensus 218 ~l-~krkTilFiDEiHRFNksQQD~f---LP~VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL~ra 293 (554)
T KOG2028|consen 218 SL-TKRKTILFIDEIHRFNKSQQDTF---LPHVENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTILMRA 293 (554)
T ss_pred hh-hcceeEEEeHHhhhhhhhhhhcc---cceeccCceEEEecccCCCccchhHHHHhccceeEeccCCHHHHHHHHHHH
Confidence 12 37899999999964 3344433 444556776666 7887765 233444578999999999999998774
Q ss_pred cC---C------CCCCc---hhHHHHHHHHHHhCCCh
Q 001457 327 AG---L------PEGTK---AFDRAAEEVVRQCGKLP 351 (1074)
Q Consensus 327 a~---~------~~~~~---~~~~~~~~i~~~c~glP 351 (1074)
.. + .-.++ ....+..-++..|.|-.
T Consensus 294 ia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDa 330 (554)
T KOG2028|consen 294 IASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDA 330 (554)
T ss_pred HHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchH
Confidence 32 1 11121 22456677777787754
No 63
>PLN03150 hypothetical protein; Provisional
Probab=98.25 E-value=1.7e-06 Score=104.37 Aligned_cols=101 Identities=20% Similarity=0.383 Sum_probs=71.1
Q ss_pred ccEEEecCCccC-CCCCCccCCccCCeeeccCCCCCC--CccccCCCCccEEEeeCCCCc-ccCccccCCCCCCEEeCCC
Q 001457 557 IKNLDLSSTNIS-SLAPSLPCLEKLRSLHLENTHLND--ASLIREFGELEVLILKGSRIV-ELPNGIGTVSNLKLLDLSN 632 (1074)
Q Consensus 557 L~~L~l~~~~~~-~lp~~i~~l~~Lr~L~L~~~~l~~--~~~i~~l~~L~~L~L~~~~i~-~lp~~i~~L~~L~~L~l~~ 632 (1074)
++.|+|++|.+. .+|..++.+++|++|+|++|.+.. |..++.+++|++|+|++|++. .+|..+++|++|++|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 667777777776 556677777777777777777765 667777777777777777766 6677777777777777777
Q ss_pred CcCCCCcChhhhcC-CCCcCEEEccCC
Q 001457 633 NLFLQVIPPNVISK-LSQLEELYVGNS 658 (1074)
Q Consensus 633 ~~~~~~~p~~~i~~-L~~L~~L~l~~~ 658 (1074)
|.+...+|.. ++. ..++..+++.+|
T Consensus 500 N~l~g~iP~~-l~~~~~~~~~l~~~~N 525 (623)
T PLN03150 500 NSLSGRVPAA-LGGRLLHRASFNFTDN 525 (623)
T ss_pred CcccccCChH-HhhccccCceEEecCC
Confidence 7776677765 433 344556666554
No 64
>PLN03150 hypothetical protein; Provisional
Probab=98.24 E-value=2.2e-06 Score=103.30 Aligned_cols=107 Identities=21% Similarity=0.328 Sum_probs=93.3
Q ss_pred CccEEEccCCCCCCCChhHHhcCCCccEEEecCCccC-CCCCCccCCccCCeeeccCCCCCC--CccccCCCCccEEEee
Q 001457 532 RLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNIS-SLAPSLPCLEKLRSLHLENTHLND--ASLIREFGELEVLILK 608 (1074)
Q Consensus 532 ~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~lp~~i~~l~~Lr~L~L~~~~l~~--~~~i~~l~~L~~L~L~ 608 (1074)
.++.|+|++|.+....+..+.++++|+.|+|++|.+. .+|+.++.+++|++|+|++|.++. |..++++++|++|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 4788999999988766667899999999999999998 778899999999999999999986 8899999999999999
Q ss_pred CCCCc-ccCccccCC-CCCCEEeCCCCcCCCC
Q 001457 609 GSRIV-ELPNGIGTV-SNLKLLDLSNNLFLQV 638 (1074)
Q Consensus 609 ~~~i~-~lp~~i~~L-~~L~~L~l~~~~~~~~ 638 (1074)
+|.+. .+|..++.+ .++..+++.+|..+..
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~ 530 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCG 530 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccC
Confidence 99987 889888764 5778899888865443
No 65
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.21 E-value=1.5e-06 Score=69.63 Aligned_cols=57 Identities=26% Similarity=0.475 Sum_probs=36.7
Q ss_pred CCccEEEecCCccCCCCC-CccCCccCCeeeccCCCCCC--CccccCCCCccEEEeeCCC
Q 001457 555 REIKNLDLSSTNISSLAP-SLPCLEKLRSLHLENTHLND--ASLIREFGELEVLILKGSR 611 (1074)
Q Consensus 555 ~~L~~L~l~~~~~~~lp~-~i~~l~~Lr~L~L~~~~l~~--~~~i~~l~~L~~L~L~~~~ 611 (1074)
++|++|++++|.++.+|+ .+..+++|++|++++|.++. +..+.++++|++|++++|+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 356677777777776664 55666777777777666655 4455666666666666654
No 66
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.21 E-value=0.00025 Score=84.92 Aligned_cols=199 Identities=20% Similarity=0.156 Sum_probs=111.4
Q ss_pred CcccCcchHHHHHHHHHHHhcCCCceeEEEEEcCCCCcHHHHHHHHHhh---cCCC---CeEEEEEecCC---cCHHHHH
Q 001457 158 EFVPLKSALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ---EIPF---DKVIFVRVTQT---PDVKRVQ 228 (1074)
Q Consensus 158 ~~~~~~~r~~~~~~l~~~l~~~~~~~~vi~I~G~gG~GKTtLa~~v~~~---~~~F---~~~~wv~vs~~---~~~~~~~ 228 (1074)
.+..+.|+...+..++..+.... ...+.|+|++|+||||+|+.+++. ...+ ...-|+.+... .+...+.
T Consensus 152 ~~~~iiGqs~~~~~l~~~ia~~~--~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~ 229 (615)
T TIGR02903 152 AFSEIVGQERAIKALLAKVASPF--PQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREVT 229 (615)
T ss_pred cHHhceeCcHHHHHHHHHHhcCC--CCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHHh
Confidence 33345577777777777775444 567999999999999999999877 2222 12346655432 1222221
Q ss_pred HHH---------------HHHhccC------------------CCcchHHHHHHHHHHHHHccCeEEEEEcCcccc--cc
Q 001457 229 DEI---------------ARFLNTE------------------LEGDVEVLRAAFLSERLKRQKRVLIILDDLWGK--LD 273 (1074)
Q Consensus 229 ~~i---------------~~~l~~~------------------~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~--~~ 273 (1074)
..+ +...+.. .-...+......+.+.++ .+++.++-|+.|.. ..
T Consensus 230 ~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le-~~~v~~~~~~~~~~~~~~ 308 (615)
T TIGR02903 230 NPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLE-DKRVEFSSSYYDPDDPNV 308 (615)
T ss_pred HHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHh-hCeEEeecceeccCCccc
Confidence 111 1111100 001112334556777775 68888887766643 45
Q ss_pred ccccccCCCCCCCCeEEEE--ecCChhH-Hhhc-cCCCeEeCCCCCHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhCC
Q 001457 274 LAVVGIPYGEEHKGCKIIL--TSRFKEV-CDEM-ESTNYVQVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGK 349 (1074)
Q Consensus 274 ~~~~~~~~~~~~~gs~iiv--TTR~~~v-~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~i~~~c~g 349 (1074)
|+.+...+....+...|++ ||++... .... .....+.+.+++.+|.+.++.+.+.... ..--.++.+.|++.+..
T Consensus 309 ~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~-v~ls~eal~~L~~ys~~ 387 (615)
T TIGR02903 309 PKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKIN-VHLAAGVEELIARYTIE 387 (615)
T ss_pred chhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHCCCc
Confidence 7777666655555555555 5665432 1111 1124678899999999999988765211 11113444445554443
Q ss_pred ChHHHHHHHHH
Q 001457 350 LPNAIVIIGTA 360 (1074)
Q Consensus 350 lPLai~~~~~~ 360 (1074)
-+-|+..++..
T Consensus 388 gRraln~L~~~ 398 (615)
T TIGR02903 388 GRKAVNILADV 398 (615)
T ss_pred HHHHHHHHHHH
Confidence 34455444433
No 67
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.19 E-value=3.2e-05 Score=89.24 Aligned_cols=193 Identities=12% Similarity=0.088 Sum_probs=106.4
Q ss_pred CCCCcccCcchHHHHHHHHHHHhcCCCceeEEEEEcCCCCcHHHHHHHHHhh--c-CCCCe-EEEEEecCCcCHHHHHHH
Q 001457 155 PTPEFVPLKSALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ--E-IPFDK-VIFVRVTQTPDVKRVQDE 230 (1074)
Q Consensus 155 ~~~~~~~~~~r~~~~~~l~~~l~~~~~~~~vi~I~G~gG~GKTtLa~~v~~~--~-~~F~~-~~wv~vs~~~~~~~~~~~ 230 (1074)
.+..+..+.|.+..+..+...+..+. -.+.+.++|+.|+||||+|+.+++. . ..... -.+..+... .-...
T Consensus 16 RP~~f~dliGq~~vv~~L~~ai~~~r-i~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C----~~C~~ 90 (507)
T PRK06645 16 RPSNFAELQGQEVLVKVLSYTILNDR-LAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQC----TNCIS 90 (507)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCC----hHHHH
Confidence 34455556677777777766665544 2357889999999999999999887 1 11100 000000000 00111
Q ss_pred HHHHhccC---CC--cchHHHHHHHHHHHHH----ccCeEEEEEcCcccc--ccccccccCCCCCCCCeEEEE-ecCChh
Q 001457 231 IARFLNTE---LE--GDVEVLRAAFLSERLK----RQKRVLIILDDLWGK--LDLAVVGIPYGEEHKGCKIIL-TSRFKE 298 (1074)
Q Consensus 231 i~~~l~~~---~~--~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~~~~~~~~~~~gs~iiv-TTR~~~ 298 (1074)
+......+ .+ .....+....+.+... .+++-++|+|+++.- ..++.+...+......+++|+ ||+.+.
T Consensus 91 i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~k 170 (507)
T PRK06645 91 FNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQK 170 (507)
T ss_pred HhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHH
Confidence 11000000 00 0000111111211111 257788999999863 446655544444344666654 555555
Q ss_pred HHhhcc-CCCeEeCCCCCHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhCCChHH
Q 001457 299 VCDEME-STNYVQVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLPNA 353 (1074)
Q Consensus 299 v~~~~~-~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~i~~~c~glPLa 353 (1074)
+..... ....+++++++.++....+.+.+.... ..-..+....|++.++|.+--
T Consensus 171 I~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~eg-i~ie~eAL~~Ia~~s~GslR~ 225 (507)
T PRK06645 171 IPATIISRCQRYDLRRLSFEEIFKLLEYITKQEN-LKTDIEALRIIAYKSEGSARD 225 (507)
T ss_pred hhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHH
Confidence 544332 336799999999999999988875221 122345677799999997743
No 68
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.18 E-value=3e-05 Score=92.75 Aligned_cols=183 Identities=13% Similarity=0.118 Sum_probs=107.2
Q ss_pred CCCcccCcchHHHHHHHHHHHhcCCCceeEEEEEcCCCCcHHHHHHHHHhh--cC-C-------------------CCeE
Q 001457 156 TPEFVPLKSALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ--EI-P-------------------FDKV 213 (1074)
Q Consensus 156 ~~~~~~~~~r~~~~~~l~~~l~~~~~~~~vi~I~G~gG~GKTtLa~~v~~~--~~-~-------------------F~~~ 213 (1074)
+..|..+.|.+..++.+.+++..+. -...+.++|+.|+||||+|+.+.+. .. . |.-+
T Consensus 12 P~tFddIIGQe~Iv~~LknaI~~~r-l~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~Dv 90 (944)
T PRK14949 12 PATFEQMVGQSHVLHALTNALTQQR-LHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDL 90 (944)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceE
Confidence 3445556678888888877776655 1345589999999999999999988 21 1 1111
Q ss_pred EEEEecCCcCHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHccCeEEEEEcCcccc--ccccccccCCCCCCCCeEEE
Q 001457 214 IFVRVTQTPDVKRVQDEIARFLNTELEGDVEVLRAAFLSERLKRQKRVLIILDDLWGK--LDLAVVGIPYGEEHKGCKII 291 (1074)
Q Consensus 214 ~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~--~~~~~~~~~~~~~~~gs~ii 291 (1074)
++++.+....+.. +++|...+ ...-..+++-++|+|++..- ..++.+...+-......++|
T Consensus 91 iEidAas~~kVDd-IReLie~v----------------~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFI 153 (944)
T PRK14949 91 IEVDAASRTKVDD-TRELLDNV----------------QYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFL 153 (944)
T ss_pred EEeccccccCHHH-HHHHHHHH----------------HhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEE
Confidence 2221111111111 12222111 11111367889999998753 44444433332223456666
Q ss_pred EecC-ChhHHhh-ccCCCeEeCCCCCHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhCCChHHHHHH
Q 001457 292 LTSR-FKEVCDE-MESTNYVQVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLPNAIVII 357 (1074)
Q Consensus 292 vTTR-~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 357 (1074)
++|. ...+... ......|++++++.++..+.+.+.+... ...-..+....|++.++|.|--+..+
T Consensus 154 LaTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~E-gI~~edeAL~lIA~~S~Gd~R~ALnL 220 (944)
T PRK14949 154 LATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQE-QLPFEAEALTLLAKAANGSMRDALSL 220 (944)
T ss_pred EECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 6554 4444322 2233689999999999999888766421 12233567888999999988544433
No 69
>PRK04195 replication factor C large subunit; Provisional
Probab=98.18 E-value=0.00013 Score=85.60 Aligned_cols=254 Identities=13% Similarity=0.106 Sum_probs=135.7
Q ss_pred CCCcccCcchHHHHHHHHHHHhcCC--CceeEEEEEcCCCCcHHHHHHHHHhhcCCCCeEEEEEecCCcCHHHHHHHHHH
Q 001457 156 TPEFVPLKSALEVIKSVMKLLKDNS--ISINIIGVYGSGGIGKTTLMKQVMKQEIPFDKVIFVRVTQTPDVKRVQDEIAR 233 (1074)
Q Consensus 156 ~~~~~~~~~r~~~~~~l~~~l~~~~--~~~~vi~I~G~gG~GKTtLa~~v~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 233 (1074)
+..+..+.|.++.++.+..|+.... ...+.+.|+|++|+||||+|+.++++-+ |+ .+-++.++..+.. .+..++.
T Consensus 10 P~~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~-~~-~ielnasd~r~~~-~i~~~i~ 86 (482)
T PRK04195 10 PKTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYG-WE-VIELNASDQRTAD-VIERVAG 86 (482)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcC-CC-EEEEcccccccHH-HHHHHHH
Confidence 3344456678888888888775421 1267899999999999999999998821 22 3334444433222 2222222
Q ss_pred HhccCCCcchHHHHHHHHHHHHHccCeEEEEEcCcccccc------ccccccCCCCCCCCeEEEEecCChh-HHh-hc-c
Q 001457 234 FLNTELEGDVEVLRAAFLSERLKRQKRVLIILDDLWGKLD------LAVVGIPYGEEHKGCKIILTSRFKE-VCD-EM-E 304 (1074)
Q Consensus 234 ~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~------~~~~~~~~~~~~~gs~iivTTR~~~-v~~-~~-~ 304 (1074)
..... ..+...++-+||+|+++.... +..+...+. ..+..||+|+.+.. ... .. .
T Consensus 87 ~~~~~--------------~sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~--~~~~~iIli~n~~~~~~~k~Lrs 150 (482)
T PRK04195 87 EAATS--------------GSLFGARRKLILLDEVDGIHGNEDRGGARAILELIK--KAKQPIILTANDPYDPSLRELRN 150 (482)
T ss_pred Hhhcc--------------CcccCCCCeEEEEecCcccccccchhHHHHHHHHHH--cCCCCEEEeccCccccchhhHhc
Confidence 21100 001112678999999976421 233322221 12344666654322 211 11 2
Q ss_pred CCCeEeCCCCCHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhCCChHHHHHHHHHHc-CC---ChhHHHHHHHHHhhCC
Q 001457 305 STNYVQVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLPNAIVIIGTALR-HK---PVREWNEAIKRKKAST 380 (1074)
Q Consensus 305 ~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~l~-~~---~~~~w~~~~~~l~~~~ 380 (1074)
....+++.+++.++....+.+.+.... ..-..++...|++.++|-.-.+......+. +. +.+.-..+..
T Consensus 151 r~~~I~f~~~~~~~i~~~L~~i~~~eg-i~i~~eaL~~Ia~~s~GDlR~ain~Lq~~a~~~~~it~~~v~~~~~------ 223 (482)
T PRK04195 151 ACLMIEFKRLSTRSIVPVLKRICRKEG-IECDDEALKEIAERSGGDLRSAINDLQAIAEGYGKLTLEDVKTLGR------ 223 (482)
T ss_pred cceEEEecCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCcHHHHHHhhc------
Confidence 235789999999998888877764211 112256788899999997655443333332 22 2222222211
Q ss_pred CCCCCCchHHHHHHHHHhhc-CChhhHHHHHHhhcCCCCCCccchHHHHHHHhhhcccccccchhhhh
Q 001457 381 PINVEGIPEEVVLCVALGYD-QLETVAKSCLQFSCLFPPYYSVSMEEFVIHGLVDRLFPQVGLLGEVG 447 (1074)
Q Consensus 381 ~~~~~~~~~~~~~~l~~sy~-~L~~~~k~cf~~~s~fp~~~~i~~~~li~~wia~g~i~~~~~~~~~~ 447 (1074)
.+....++.++..-+. .-+..+...+..+ .++. ..+-.|+.|++.......+++.
T Consensus 224 ----~d~~~~if~~l~~i~~~k~~~~a~~~~~~~-------~~~~-~~i~~~l~en~~~~~~~~~~~~ 279 (482)
T PRK04195 224 ----RDREESIFDALDAVFKARNADQALEASYDV-------DEDP-DDLIEWIDENIPKEYDDPEDIA 279 (482)
T ss_pred ----CCCCCCHHHHHHHHHCCCCHHHHHHHHHcc-------cCCH-HHHHHHHHhccccccCCHHHHH
Confidence 1122455666654444 2233333322222 2233 3567899999987544444443
No 70
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.17 E-value=2.1e-05 Score=90.92 Aligned_cols=199 Identities=14% Similarity=0.084 Sum_probs=107.2
Q ss_pred CCCcccCcchHHHHHHHHHHHhcCCCceeEEEEEcCCCCcHHHHHHHHHhh-cC-CCCeEEEEEecCCcCHHHHHHHHHH
Q 001457 156 TPEFVPLKSALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ-EI-PFDKVIFVRVTQTPDVKRVQDEIAR 233 (1074)
Q Consensus 156 ~~~~~~~~~r~~~~~~l~~~l~~~~~~~~vi~I~G~gG~GKTtLa~~v~~~-~~-~F~~~~wv~vs~~~~~~~~~~~i~~ 233 (1074)
...|..+.|.+..++.+.+.+..+. -.+.+.++|..|+||||+|+.+.+. .. .-+..--+. +..+..-...+.|..
T Consensus 12 PqtFddVIGQe~vv~~L~~al~~gR-LpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~-~~PCG~C~sC~~I~a 89 (700)
T PRK12323 12 PRDFTTLVGQEHVVRALTHALEQQR-LHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGIT-AQPCGQCRACTEIDA 89 (700)
T ss_pred CCcHHHHcCcHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCC-CCCCcccHHHHHHHc
Confidence 4455567788888888888887665 1346789999999999999999877 11 000000000 000100111111110
Q ss_pred Hh-----ccCCCcchHHHHHHHHHHHH----HccCeEEEEEcCcccc--ccccccccCCCCCCCCeEEE-EecCChhHHh
Q 001457 234 FL-----NTELEGDVEVLRAAFLSERL----KRQKRVLIILDDLWGK--LDLAVVGIPYGEEHKGCKII-LTSRFKEVCD 301 (1074)
Q Consensus 234 ~l-----~~~~~~~~~~~~~~~l~~~l----~~~k~~LlVlDdv~~~--~~~~~~~~~~~~~~~gs~ii-vTTR~~~v~~ 301 (1074)
.- ..+.......+.+..+.+.+ ..++.-++|+|++..- ..++.+...+..-..+.++| +||....+..
T Consensus 90 G~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLlp 169 (700)
T PRK12323 90 GRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPV 169 (700)
T ss_pred CCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhhh
Confidence 00 00000000011112222222 1367779999999854 34444443333323355554 4555555532
Q ss_pred hc-cCCCeEeCCCCCHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhCCChHHHHHH
Q 001457 302 EM-ESTNYVQVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLPNAIVII 357 (1074)
Q Consensus 302 ~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 357 (1074)
.+ .....++++.++.++..+.+.+.+.... .....+..+.|++.++|.|.....+
T Consensus 170 TIrSRCq~f~f~~ls~eei~~~L~~Il~~Eg-i~~d~eAL~~IA~~A~Gs~RdALsL 225 (700)
T PRK12323 170 TVLSRCLQFNLKQMPPGHIVSHLDAILGEEG-IAHEVNALRLLAQAAQGSMRDALSL 225 (700)
T ss_pred HHHHHHHhcccCCCChHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 22 2236899999999999998887764211 1223456688999999998654443
No 71
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.16 E-value=8.3e-05 Score=86.34 Aligned_cols=194 Identities=16% Similarity=0.078 Sum_probs=107.2
Q ss_pred CCCcccCcchHHHHHHHHHHHhcCCCceeEEEEEcCCCCcHHHHHHHHHhh---cCCCCeEEEEEecCCcCHHHHHHHHH
Q 001457 156 TPEFVPLKSALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ---EIPFDKVIFVRVTQTPDVKRVQDEIA 232 (1074)
Q Consensus 156 ~~~~~~~~~r~~~~~~l~~~l~~~~~~~~vi~I~G~gG~GKTtLa~~v~~~---~~~F~~~~wv~vs~~~~~~~~~~~i~ 232 (1074)
+..+..+.|.+..++.+..++..+. -...+.++|++|+||||+|+.+++. .+.+...+|.|.+... +.......+
T Consensus 10 P~~~~dvvGq~~v~~~L~~~i~~~~-l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~-i~~~~h~dv 87 (504)
T PRK14963 10 PITFDEVVGQEHVKEVLLAALRQGR-LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLA-VRRGAHPDV 87 (504)
T ss_pred CCCHHHhcChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHH-HhcCCCCce
Confidence 3344556677777777777776655 2346699999999999999999887 2223323333321100 000000000
Q ss_pred HHhccCCCcchHHHHHHHHHHHHH----ccCeEEEEEcCcccc--ccccccccCCCCCCCCeEEEEec-CChhHHhhc-c
Q 001457 233 RFLNTELEGDVEVLRAAFLSERLK----RQKRVLIILDDLWGK--LDLAVVGIPYGEEHKGCKIILTS-RFKEVCDEM-E 304 (1074)
Q Consensus 233 ~~l~~~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~~~~~~~~~~~gs~iivTT-R~~~v~~~~-~ 304 (1074)
..+... .......+..+.+.+. .+++-++|+|+++.. ..++.+...+........+|++| +...+.... .
T Consensus 88 ~el~~~--~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~S 165 (504)
T PRK14963 88 LEIDAA--SNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILS 165 (504)
T ss_pred EEeccc--ccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhc
Confidence 000000 0000111222222221 256779999998754 34555544443333455555555 444443222 2
Q ss_pred CCCeEeCCCCCHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhCCChHHH
Q 001457 305 STNYVQVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLPNAI 354 (1074)
Q Consensus 305 ~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~i~~~c~glPLai 354 (1074)
....+++.+++.++..+.+.+.+.... ..-..+....|++.++|.+--+
T Consensus 166 Rc~~~~f~~ls~~el~~~L~~i~~~eg-i~i~~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 166 RTQHFRFRRLTEEEIAGKLRRLLEAEG-REAEPEALQLVARLADGAMRDA 214 (504)
T ss_pred ceEEEEecCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHH
Confidence 236899999999999999988765211 1223567888999999988543
No 72
>PLN03025 replication factor C subunit; Provisional
Probab=98.16 E-value=1.8e-05 Score=87.53 Aligned_cols=179 Identities=11% Similarity=0.146 Sum_probs=100.6
Q ss_pred CCCcccCcchHHHHHHHHHHHhcCCCceeEEEEEcCCCCcHHHHHHHHHhh--cCCCC-eEEEEEecCCcCHHHHHHHHH
Q 001457 156 TPEFVPLKSALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ--EIPFD-KVIFVRVTQTPDVKRVQDEIA 232 (1074)
Q Consensus 156 ~~~~~~~~~r~~~~~~l~~~l~~~~~~~~vi~I~G~gG~GKTtLa~~v~~~--~~~F~-~~~wv~vs~~~~~~~~~~~i~ 232 (1074)
+..+..+.|..+.++.+..++..+. .+.+.++|++|+||||+|+.+.+. ...|. .++-++.++..... ..++++
T Consensus 9 P~~l~~~~g~~~~~~~L~~~~~~~~--~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd~~~~~-~vr~~i 85 (319)
T PLN03025 9 PTKLDDIVGNEDAVSRLQVIARDGN--MPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASDDRGID-VVRNKI 85 (319)
T ss_pred CCCHHHhcCcHHHHHHHHHHHhcCC--CceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecccccccHH-HHHHHH
Confidence 3444456677776776666665544 556789999999999999999988 33343 22223333332222 222222
Q ss_pred HHhccCCCcchHHHHHHHHHHHHHccCeEEEEEcCcccc--ccccccccCCCCCCCCeEEEEecCCh-hHHhhc-cCCCe
Q 001457 233 RFLNTELEGDVEVLRAAFLSERLKRQKRVLIILDDLWGK--LDLAVVGIPYGEEHKGCKIILTSRFK-EVCDEM-ESTNY 308 (1074)
Q Consensus 233 ~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~--~~~~~~~~~~~~~~~gs~iivTTR~~-~v~~~~-~~~~~ 308 (1074)
+.+..... ....++.-++|+|+++.- .....+...+......+++|+++... .+.... .....
T Consensus 86 ~~~~~~~~-------------~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~ 152 (319)
T PLN03025 86 KMFAQKKV-------------TLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAI 152 (319)
T ss_pred HHHHhccc-------------cCCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhc
Confidence 21110000 001245678999999754 22222222222223456777766432 222111 12257
Q ss_pred EeCCCCCHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhCCCh
Q 001457 309 VQVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLP 351 (1074)
Q Consensus 309 ~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~i~~~c~glP 351 (1074)
++++++++++....+.+.+.... ..-..+....|++.++|-.
T Consensus 153 i~f~~l~~~~l~~~L~~i~~~eg-i~i~~~~l~~i~~~~~gDl 194 (319)
T PLN03025 153 VRFSRLSDQEILGRLMKVVEAEK-VPYVPEGLEAIIFTADGDM 194 (319)
T ss_pred ccCCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCH
Confidence 89999999999988887775211 1112456788999998865
No 73
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.16 E-value=0.00016 Score=80.35 Aligned_cols=196 Identities=23% Similarity=0.261 Sum_probs=124.2
Q ss_pred CcchHHHHHHHHHHHhcC--CCceeEEEEEcCCCCcHHHHHHHHHhh-cCCC-Ce-EEEEEecCCcCHHHHHHHHHHHhc
Q 001457 162 LKSALEVIKSVMKLLKDN--SISINIIGVYGSGGIGKTTLMKQVMKQ-EIPF-DK-VIFVRVTQTPDVKRVQDEIARFLN 236 (1074)
Q Consensus 162 ~~~r~~~~~~l~~~l~~~--~~~~~vi~I~G~gG~GKTtLa~~v~~~-~~~F-~~-~~wv~vs~~~~~~~~~~~i~~~l~ 236 (1074)
+.+|+++++++...+..- +....-+.|+|.+|+|||+.++.|... .... .. +++|++-...+..+++..|+++++
T Consensus 19 l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~~ 98 (366)
T COG1474 19 LPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKLG 98 (366)
T ss_pred ccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHHcC
Confidence 557888888888776431 111334899999999999999999998 2221 22 789999999999999999999996
Q ss_pred c-CCCcchHHHHHHHHHHHHH-ccCeEEEEEcCcccccc-----ccccccCCCCCCCCeEEEE--ecCChhHHhh-----
Q 001457 237 T-ELEGDVEVLRAAFLSERLK-RQKRVLIILDDLWGKLD-----LAVVGIPYGEEHKGCKIIL--TSRFKEVCDE----- 302 (1074)
Q Consensus 237 ~-~~~~~~~~~~~~~l~~~l~-~~k~~LlVlDdv~~~~~-----~~~~~~~~~~~~~gs~iiv--TTR~~~v~~~----- 302 (1074)
. ...+.+..+....+.+.+. .++.++||||+++.-.. +..+...... .+++|+| .+-+......
T Consensus 99 ~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~--~~~~v~vi~i~n~~~~~~~ld~rv 176 (366)
T COG1474 99 KVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGE--NKVKVSIIAVSNDDKFLDYLDPRV 176 (366)
T ss_pred CCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccc--cceeEEEEEEeccHHHHHHhhhhh
Confidence 3 3345566777777777775 37899999999985422 2222222111 1454444 3333332222
Q ss_pred ---ccCCCeEeCCCCCHHHHHHHHHHhcC----CCCCCch-hHHHHHHHHHHhCCChHHHHHHHHH
Q 001457 303 ---MESTNYVQVEELTDEDRLILFKKKAG----LPEGTKA-FDRAAEEVVRQCGKLPNAIVIIGTA 360 (1074)
Q Consensus 303 ---~~~~~~~~l~~L~~~~~~~lf~~~a~----~~~~~~~-~~~~~~~i~~~c~glPLai~~~~~~ 360 (1074)
++. ..+..++-+.+|-..++..++. .....+. ++-++...++..|-.=.||..+-..
T Consensus 177 ~s~l~~-~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr~A 241 (366)
T COG1474 177 KSSLGP-SEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILRRA 241 (366)
T ss_pred hhccCc-ceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHHHH
Confidence 222 3477889999999999887764 2222333 3344444444444444555554433
No 74
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.15 E-value=6e-05 Score=84.78 Aligned_cols=191 Identities=12% Similarity=0.089 Sum_probs=104.6
Q ss_pred CCcccCcchHHHHHHHHHHHhcCCCceeEEEEEcCCCCcHHHHHHHHHhh-cCCCCeEEEEEecCCcCHHHHHHHHHHHh
Q 001457 157 PEFVPLKSALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKRVQDEIARFL 235 (1074)
Q Consensus 157 ~~~~~~~~r~~~~~~l~~~l~~~~~~~~vi~I~G~gG~GKTtLa~~v~~~-~~~F~~~~wv~vs~~~~~~~~~~~i~~~l 235 (1074)
..+..+.|.+..++.+...+..+. -.+.+.++|+.|+||||+|+.+.+. ...... . ...+..-....++....
T Consensus 13 ~~~~~iiGq~~~~~~l~~~~~~~~-~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~----~-~~pc~~c~~c~~~~~~~ 86 (363)
T PRK14961 13 QYFRDIIGQKHIVTAISNGLSLGR-IHHAWLLSGTRGVGKTTIARLLAKSLNCQNGI----T-SNPCRKCIICKEIEKGL 86 (363)
T ss_pred CchhhccChHHHHHHHHHHHHcCC-CCeEEEEecCCCCCHHHHHHHHHHHhcCCCCC----C-CCCCCCCHHHHHHhcCC
Confidence 444556678888888877776654 2356789999999999999999887 211000 0 00000000111111110
Q ss_pred ccCC---Cc--chHHHHHHHHHHHHH----ccCeEEEEEcCccccc--cccccccCCCCCCCCeEEEEecCCh-hHHhhc
Q 001457 236 NTEL---EG--DVEVLRAAFLSERLK----RQKRVLIILDDLWGKL--DLAVVGIPYGEEHKGCKIILTSRFK-EVCDEM 303 (1074)
Q Consensus 236 ~~~~---~~--~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~--~~~~~~~~~~~~~~gs~iivTTR~~-~v~~~~ 303 (1074)
..+. +. .........+.+.+. .+++-++|+|++..-. .++.+...+.......++|++|.+. .+....
T Consensus 87 ~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~tI 166 (363)
T PRK14961 87 CLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKTI 166 (363)
T ss_pred CCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhHHH
Confidence 0000 00 000111222222221 2456699999998643 3444443333334466777766543 333222
Q ss_pred -cCCCeEeCCCCCHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhCCChHHH
Q 001457 304 -ESTNYVQVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLPNAI 354 (1074)
Q Consensus 304 -~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~i~~~c~glPLai 354 (1074)
+....+++++++.++..+.+.+.+.... ..-.++.+..|++.++|-|-.+
T Consensus 167 ~SRc~~~~~~~l~~~el~~~L~~~~~~~g-~~i~~~al~~ia~~s~G~~R~a 217 (363)
T PRK14961 167 LSRCLQFKLKIISEEKIFNFLKYILIKES-IDTDEYALKLIAYHAHGSMRDA 217 (363)
T ss_pred HhhceEEeCCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHH
Confidence 2236899999999999888877654211 1223466788999999988543
No 75
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.15 E-value=2.9e-05 Score=81.52 Aligned_cols=162 Identities=12% Similarity=0.196 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHhcCCCceeEEEEEcCCCCcHHHHHHHHHhh-cCCCCeEEEEEecCCcCHHHHHHHHHHHhccCCCcchH
Q 001457 166 LEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKRVQDEIARFLNTELEGDVE 244 (1074)
Q Consensus 166 ~~~~~~l~~~l~~~~~~~~vi~I~G~gG~GKTtLa~~v~~~-~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~ 244 (1074)
...+..+-.+..... .+.+.|+|+.|+|||+|++.+++. ...-..+.|+++.....
T Consensus 30 ~~a~~~l~~~~~~~~--~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~~--------------------- 86 (235)
T PRK08084 30 DSLLAALQNALRQEH--SGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRAW--------------------- 86 (235)
T ss_pred HHHHHHHHHHHhCCC--CCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHhh---------------------
Confidence 334444444443333 468899999999999999999988 33334566776543100
Q ss_pred HHHHHHHHHHHHccCeEEEEEcCcccc---ccccccc-cCCCC-CCCC-eEEEEecCCh---------hHHhhccCCCeE
Q 001457 245 VLRAAFLSERLKRQKRVLIILDDLWGK---LDLAVVG-IPYGE-EHKG-CKIILTSRFK---------EVCDEMESTNYV 309 (1074)
Q Consensus 245 ~~~~~~l~~~l~~~k~~LlVlDdv~~~---~~~~~~~-~~~~~-~~~g-s~iivTTR~~---------~v~~~~~~~~~~ 309 (1074)
....+.+.+. +--+|++||+... ..|+... ..+.. ...| .++|+||+.. ++...+....++
T Consensus 87 --~~~~~~~~~~--~~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~ 162 (235)
T PRK08084 87 --FVPEVLEGME--QLSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIY 162 (235)
T ss_pred --hhHHHHHHhh--hCCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCcee
Confidence 0011222222 2247899999653 3343211 11111 0123 4799998754 234445555789
Q ss_pred eCCCCCHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhCCChHHHH
Q 001457 310 QVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLPNAIV 355 (1074)
Q Consensus 310 ~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~i~~~c~glPLai~ 355 (1074)
+++++++++-.+++.+++... .-.--+++..-|++.+.|-.-++.
T Consensus 163 ~l~~~~~~~~~~~l~~~a~~~-~~~l~~~v~~~L~~~~~~d~r~l~ 207 (235)
T PRK08084 163 KLQPLSDEEKLQALQLRARLR-GFELPEDVGRFLLKRLDREMRTLF 207 (235)
T ss_pred eecCCCHHHHHHHHHHHHHHc-CCCCCHHHHHHHHHhhcCCHHHHH
Confidence 999999999999988866522 123346778888888887554433
No 76
>PRK08727 hypothetical protein; Validated
Probab=98.14 E-value=2.8e-05 Score=81.50 Aligned_cols=146 Identities=16% Similarity=0.192 Sum_probs=89.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhh-cCCCCeEEEEEecCCcCHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHccCeE
Q 001457 183 INIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKRVQDEIARFLNTELEGDVEVLRAAFLSERLKRQKRV 261 (1074)
Q Consensus 183 ~~vi~I~G~gG~GKTtLa~~v~~~-~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~ 261 (1074)
...+.|+|..|+|||+|++.+++. ......++|+++.+ ....+. ...+.+ .+.-
T Consensus 41 ~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~------~~~~~~-----------------~~~~~l--~~~d 95 (233)
T PRK08727 41 SDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQA------AAGRLR-----------------DALEAL--EGRS 95 (233)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHH------hhhhHH-----------------HHHHHH--hcCC
Confidence 356999999999999999999988 33334566776422 111111 112233 2446
Q ss_pred EEEEcCcccc---ccccccccCC-CC-CCCCeEEEEecCChh---------HHhhccCCCeEeCCCCCHHHHHHHHHHhc
Q 001457 262 LIILDDLWGK---LDLAVVGIPY-GE-EHKGCKIILTSRFKE---------VCDEMESTNYVQVEELTDEDRLILFKKKA 327 (1074)
Q Consensus 262 LlVlDdv~~~---~~~~~~~~~~-~~-~~~gs~iivTTR~~~---------v~~~~~~~~~~~l~~L~~~~~~~lf~~~a 327 (1074)
+||+||+... ..|......+ .. ...|..||+|++... +...+.....+++++++.++-.+++.+++
T Consensus 96 lLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a 175 (233)
T PRK08727 96 LVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRERA 175 (233)
T ss_pred EEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHHH
Confidence 8999998743 2232211111 11 123567999997422 22333345689999999999999999877
Q ss_pred CCCCCCchhHHHHHHHHHHhCCChHHH
Q 001457 328 GLPEGTKAFDRAAEEVVRQCGKLPNAI 354 (1074)
Q Consensus 328 ~~~~~~~~~~~~~~~i~~~c~glPLai 354 (1074)
... .-.--+++...|++.+.|-.-++
T Consensus 176 ~~~-~l~l~~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 176 QRR-GLALDEAAIDWLLTHGERELAGL 201 (233)
T ss_pred HHc-CCCCCHHHHHHHHHhCCCCHHHH
Confidence 521 12333567778888887655433
No 77
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.13 E-value=1.4e-05 Score=96.22 Aligned_cols=169 Identities=17% Similarity=0.222 Sum_probs=94.2
Q ss_pred CCcccCcchHHHHH---HHHHHHhcCCCceeEEEEEcCCCCcHHHHHHHHHhh-cCCCCeEEEEEecCCcCHHHHHHHHH
Q 001457 157 PEFVPLKSALEVIK---SVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKRVQDEIA 232 (1074)
Q Consensus 157 ~~~~~~~~r~~~~~---~l~~~l~~~~~~~~vi~I~G~gG~GKTtLa~~v~~~-~~~F~~~~wv~vs~~~~~~~~~~~i~ 232 (1074)
..+..+.|.+..+. .+...+..+. ...+.++|++|+||||+|+.+++. ..+|. .++.+. ..+.. .+++
T Consensus 25 ~tldd~vGQe~ii~~~~~L~~~i~~~~--~~slLL~GPpGtGKTTLA~aIA~~~~~~f~---~lna~~-~~i~d-ir~~- 96 (725)
T PRK13341 25 RTLEEFVGQDHILGEGRLLRRAIKADR--VGSLILYGPPGVGKTTLARIIANHTRAHFS---SLNAVL-AGVKD-LRAE- 96 (725)
T ss_pred CcHHHhcCcHHHhhhhHHHHHHHhcCC--CceEEEECCCCCCHHHHHHHHHHHhcCcce---eehhhh-hhhHH-HHHH-
Confidence 34444556665553 3444555444 667889999999999999999988 55552 111110 00111 0111
Q ss_pred HHhccCCCcchHHHHHHHHHHHHH-ccCeEEEEEcCcccc--ccccccccCCCCCCCCeEEEE--ecCChh--HHhh-cc
Q 001457 233 RFLNTELEGDVEVLRAAFLSERLK-RQKRVLIILDDLWGK--LDLAVVGIPYGEEHKGCKIIL--TSRFKE--VCDE-ME 304 (1074)
Q Consensus 233 ~~l~~~~~~~~~~~~~~~l~~~l~-~~k~~LlVlDdv~~~--~~~~~~~~~~~~~~~gs~iiv--TTR~~~--v~~~-~~ 304 (1074)
.....+.+. .+++.++|+||++.- .+++.+...+ ..|+.++| ||.+.. +... ..
T Consensus 97 ---------------i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~l---E~g~IiLI~aTTenp~~~l~~aL~S 158 (725)
T PRK13341 97 ---------------VDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWV---ENGTITLIGATTENPYFEVNKALVS 158 (725)
T ss_pred ---------------HHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHh---cCceEEEEEecCCChHhhhhhHhhc
Confidence 111111111 246789999999743 3444443222 23555555 344432 2111 12
Q ss_pred CCCeEeCCCCCHHHHHHHHHHhcCC------CCCCchhHHHHHHHHHHhCCCh
Q 001457 305 STNYVQVEELTDEDRLILFKKKAGL------PEGTKAFDRAAEEVVRQCGKLP 351 (1074)
Q Consensus 305 ~~~~~~l~~L~~~~~~~lf~~~a~~------~~~~~~~~~~~~~i~~~c~glP 351 (1074)
...++.+++++.++...++.+.+.. .....-.++....|++.+.|--
T Consensus 159 R~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~ 211 (725)
T PRK13341 159 RSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDA 211 (725)
T ss_pred cccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCH
Confidence 2357999999999999999876641 1112223566778888887753
No 78
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.13 E-value=4.9e-06 Score=89.59 Aligned_cols=289 Identities=18% Similarity=0.163 Sum_probs=180.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhhcCCC-CeEEEEEecCCcCHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHccCeE
Q 001457 183 INIIGVYGSGGIGKTTLMKQVMKQEIPF-DKVIFVRVTQTPDVKRVQDEIARFLNTELEGDVEVLRAAFLSERLKRQKRV 261 (1074)
Q Consensus 183 ~~vi~I~G~gG~GKTtLa~~v~~~~~~F-~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~ 261 (1074)
.+.+.++|.||+||||++-++..-...| +.+.++....-.+...+.-.....++...... ......+..+.. .+|.
T Consensus 14 ~RlvtL~g~ggvgkttl~~~~a~~~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~g--~~~~~~~~~~~~-~rr~ 90 (414)
T COG3903 14 LRLVTLTGAGGVGKTTLALQAAHAASEYADGVAFVDLAPITDPALVFPTLAGALGLHVQPG--DSAVDTLVRRIG-DRRA 90 (414)
T ss_pred hheeeeeccCccceehhhhhhHhHhhhcccceeeeeccccCchhHhHHHHHhhcccccccc--hHHHHHHHHHHh-hhhH
Confidence 6899999999999999999988843445 56677777776677777666666666543221 112223344443 6999
Q ss_pred EEEEcCcccc-ccccccccCCCCCCCCeEEEEecCChhHHhhccCCCeEeCCCCCHH-HHHHHHHHhcCC----CCCCch
Q 001457 262 LIILDDLWGK-LDLAVVGIPYGEEHKGCKIILTSRFKEVCDEMESTNYVQVEELTDE-DRLILFKKKAGL----PEGTKA 335 (1074)
Q Consensus 262 LlVlDdv~~~-~~~~~~~~~~~~~~~gs~iivTTR~~~v~~~~~~~~~~~l~~L~~~-~~~~lf~~~a~~----~~~~~~ 335 (1074)
++|+||..+. ++-..+...+..+...-.|+.|+|..-. ......+.+.+|+.. ++.++|...+.. -.-...
T Consensus 91 llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l---~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f~l~~~ 167 (414)
T COG3903 91 LLVLDNCEHLLDACAALIVALLGACPRLAILATSREAIL---VAGEVHRRVPSLSLFDEAIELFVCRAVLVALSFWLTDD 167 (414)
T ss_pred HHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhc---ccccccccCCccccCCchhHHHHHHHHHhccceeecCC
Confidence 9999997654 2222222223333445578888885533 234457778888766 788999777641 112334
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHcCCChhHHHHHHH----HHhhCCCCCCCCchHHHHHHHHHhhcCChhhHHHHHH
Q 001457 336 FDRAAEEVVRQCGKLPNAIVIIGTALRHKPVREWNEAIK----RKKASTPINVEGIPEEVVLCVALGYDQLETVAKSCLQ 411 (1074)
Q Consensus 336 ~~~~~~~i~~~c~glPLai~~~~~~l~~~~~~~w~~~~~----~l~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cf~ 411 (1074)
......+|.++.+|.|++|...++..+.-...+-..-++ .+..- .....--.....+.+.+||.-|..-.+--|-
T Consensus 168 ~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~-~r~a~~~~qtl~asl~ws~~lLtgwe~~~~~ 246 (414)
T COG3903 168 NAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGG-ARLAVLRQQTLRASLDWSYALLTGWERALFG 246 (414)
T ss_pred chHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcc-cccchhHHHhccchhhhhhHhhhhHHHHHhc
Confidence 457788999999999999999999998764433322222 12211 1000011256788899999999999999999
Q ss_pred hhcCCCCCCccchHHHHHHHhhhcccccccchhhhhhcHHHHHHHHHhccccccCC--CCcceeechhHHHHHHHHHh
Q 001457 412 FSCLFPPYYSVSMEEFVIHGLVDRLFPQVGLLGEVGNRVHPVVLRLISSSLLLEGD--RESCFRIHDDTRKVVKYIAA 487 (1074)
Q Consensus 412 ~~s~fp~~~~i~~~~li~~wia~g~i~~~~~~~~~~~~~~~~l~~L~~~~ll~~~~--~~~~~~mhdlv~~~~~~~~~ 487 (1074)
-++.|...+... ...|.+-|-.- ....-.+..-+..+++++++--.+ ....|+.-+-+|.|+..+-.
T Consensus 247 rLa~~~g~f~~~----l~~~~a~g~~~-----~~~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~YalaeL~ 315 (414)
T COG3903 247 RLAVFVGGFDLG----LALAVAAGADV-----DVPRYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRRYALAELH 315 (414)
T ss_pred chhhhhhhhccc----HHHHHhcCCcc-----ccchHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 999998766544 23444433211 011112234567788888863322 33356666667777766554
No 79
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.13 E-value=3.8e-05 Score=89.14 Aligned_cols=193 Identities=11% Similarity=0.060 Sum_probs=106.4
Q ss_pred CCCcccCcchHHHHHHHHHHHhcCCCceeEEEEEcCCCCcHHHHHHHHHhh-cCCCCeEEEEEecCCcCHHHHHHHHHHH
Q 001457 156 TPEFVPLKSALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKRVQDEIARF 234 (1074)
Q Consensus 156 ~~~~~~~~~r~~~~~~l~~~l~~~~~~~~vi~I~G~gG~GKTtLa~~v~~~-~~~F~~~~wv~vs~~~~~~~~~~~i~~~ 234 (1074)
+..+..+.|.+...+.+..++..+. -...+.++|+.|+||||+|+.+.+. .... ++.. ..++.-...+.|...
T Consensus 11 PktFddVIGQe~vv~~L~~aI~~gr-l~HAyLF~GPpGvGKTTlAriLAK~LnC~~----~~~~-~pCg~C~sC~~I~~g 84 (702)
T PRK14960 11 PRNFNELVGQNHVSRALSSALERGR-LHHAYLFTGTRGVGKTTIARILAKCLNCET----GVTS-TPCEVCATCKAVNEG 84 (702)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCc----CCCC-CCCccCHHHHHHhcC
Confidence 4455667788888888888887654 2357789999999999999998877 1110 1100 000100111111110
Q ss_pred hccCC---Cc--chHHHHHHHHHHHH----HccCeEEEEEcCcccc--ccccccccCCCCCCCCeEEEEecCChh-HH-h
Q 001457 235 LNTEL---EG--DVEVLRAAFLSERL----KRQKRVLIILDDLWGK--LDLAVVGIPYGEEHKGCKIILTSRFKE-VC-D 301 (1074)
Q Consensus 235 l~~~~---~~--~~~~~~~~~l~~~l----~~~k~~LlVlDdv~~~--~~~~~~~~~~~~~~~gs~iivTTR~~~-v~-~ 301 (1074)
-..+. +. ....+....+.... ..+++-++|+|++..- ...+.+...+.....+.++|++|.+.. +. .
T Consensus 85 ~hpDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp~T 164 (702)
T PRK14960 85 RFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPIT 164 (702)
T ss_pred CCCceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhhHH
Confidence 00000 00 00011111111111 1356778999999854 334444333333234567777665433 32 2
Q ss_pred hccCCCeEeCCCCCHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhCCChHHHH
Q 001457 302 EMESTNYVQVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLPNAIV 355 (1074)
Q Consensus 302 ~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~i~~~c~glPLai~ 355 (1074)
.......+++++++.++..+.+.+.+... ...-..+....|++.++|-+-.+.
T Consensus 165 IlSRCq~feFkpLs~eEI~k~L~~Il~kE-gI~id~eAL~~IA~~S~GdLRdAL 217 (702)
T PRK14960 165 VISRCLQFTLRPLAVDEITKHLGAILEKE-QIAADQDAIWQIAESAQGSLRDAL 217 (702)
T ss_pred HHHhhheeeccCCCHHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHcCCCHHHHH
Confidence 22333689999999999998888776421 122335667889999999774443
No 80
>PTZ00202 tuzin; Provisional
Probab=98.13 E-value=0.00012 Score=79.87 Aligned_cols=161 Identities=14% Similarity=0.182 Sum_probs=96.7
Q ss_pred ccCcchHHHHHHHHHHHhcCC-CceeEEEEEcCCCCcHHHHHHHHHhhcCCCCeEEEEEecCCcCHHHHHHHHHHHhccC
Q 001457 160 VPLKSALEVIKSVMKLLKDNS-ISINIIGVYGSGGIGKTTLMKQVMKQEIPFDKVIFVRVTQTPDVKRVQDEIARFLNTE 238 (1074)
Q Consensus 160 ~~~~~r~~~~~~l~~~l~~~~-~~~~vi~I~G~gG~GKTtLa~~v~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~ 238 (1074)
.++.||++++..+...|.+.+ ...+++.|.|++|+|||||++.+..... + ...+++.. +..++++.++.++|.+
T Consensus 262 ~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~-~-~qL~vNpr---g~eElLr~LL~ALGV~ 336 (550)
T PTZ00202 262 RQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG-M-PAVFVDVR---GTEDTLRSVVKALGVP 336 (550)
T ss_pred cCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC-c-eEEEECCC---CHHHHHHHHHHHcCCC
Confidence 346678888888877775433 2356999999999999999999997632 1 12233322 6799999999999974
Q ss_pred CCcchHHHHHHHHHHHHH----c-cCeEEEEEcCcccccccccc---ccCCCCCCCCeEEEEecCChhHHhhc---cCCC
Q 001457 239 LEGDVEVLRAAFLSERLK----R-QKRVLIILDDLWGKLDLAVV---GIPYGEEHKGCKIILTSRFKEVCDEM---ESTN 307 (1074)
Q Consensus 239 ~~~~~~~~~~~~l~~~l~----~-~k~~LlVlDdv~~~~~~~~~---~~~~~~~~~gs~iivTTR~~~v~~~~---~~~~ 307 (1074)
.. .........|.+.+. . +++.+||+-= .+.+.+..+ ...+.....-|.|++----+.+.-.. ..-.
T Consensus 337 p~-~~k~dLLrqIqeaLl~~~~e~GrtPVLII~l-reg~~l~rvyne~v~la~drr~ch~v~evpleslt~~~~~lprld 414 (550)
T PTZ00202 337 NV-EACGDLLDFISEACRRAKKMNGETPLLVLKL-REGSSLQRVYNEVVALACDRRLCHVVIEVPLESLTIANTLLPRLD 414 (550)
T ss_pred Cc-ccHHHHHHHHHHHHHHHHHhCCCCEEEEEEe-cCCCcHHHHHHHHHHHHccchhheeeeeehHhhcchhcccCccce
Confidence 32 222334444444442 3 7788888742 111111110 01222333456676655444432111 1124
Q ss_pred eEeCCCCCHHHHHHHHHHhc
Q 001457 308 YVQVEELTDEDRLILFKKKA 327 (1074)
Q Consensus 308 ~~~l~~L~~~~~~~lf~~~a 327 (1074)
.|.++.++.++|.+.-....
T Consensus 415 f~~vp~fsr~qaf~y~~h~~ 434 (550)
T PTZ00202 415 FYLVPNFSRSQAFAYTQHAI 434 (550)
T ss_pred eEecCCCCHHHHHHHHhhcc
Confidence 78899999999987665443
No 81
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.12 E-value=8.5e-06 Score=89.04 Aligned_cols=87 Identities=15% Similarity=0.145 Sum_probs=62.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh--cCCCCeEEEEEecCC--cCHHHHHHHHHHHhccCCCcchH---HHH----HHHHH
Q 001457 184 NIIGVYGSGGIGKTTLMKQVMKQ--EIPFDKVIFVRVTQT--PDVKRVQDEIARFLNTELEGDVE---VLR----AAFLS 252 (1074)
Q Consensus 184 ~vi~I~G~gG~GKTtLa~~v~~~--~~~F~~~~wv~vs~~--~~~~~~~~~i~~~l~~~~~~~~~---~~~----~~~l~ 252 (1074)
..++|+|++|+|||||++.+++. .++|+..+||.+.+. .++.++++.+...+-...-+.+. ... .+...
T Consensus 169 q~~~IvG~~g~GKTtL~~~i~~~I~~nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e~Ae 248 (415)
T TIGR00767 169 QRGLIVAPPKAGKTVLLQKIAQAITRNHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIEKAK 248 (415)
T ss_pred CEEEEECCCCCChhHHHHHHHHhhcccCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHHHHH
Confidence 47899999999999999999998 667999999999976 78999999985433221111111 111 12222
Q ss_pred HHHHccCeEEEEEcCccc
Q 001457 253 ERLKRQKRVLIILDDLWG 270 (1074)
Q Consensus 253 ~~l~~~k~~LlVlDdv~~ 270 (1074)
.....|++.+|++|++..
T Consensus 249 ~~~~~GkdVVLlIDEitR 266 (415)
T TIGR00767 249 RLVEHKKDVVILLDSITR 266 (415)
T ss_pred HHHHcCCCeEEEEEChhH
Confidence 233368999999999864
No 82
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.11 E-value=3.5e-05 Score=86.78 Aligned_cols=193 Identities=15% Similarity=0.161 Sum_probs=103.5
Q ss_pred cccCcchHHHHHHHHHHHhcCCCceeEEEEEcCCCCcHHHHHHHHHhh--cCCCC-eEEEEEecCCcCH--HHHHH--HH
Q 001457 159 FVPLKSALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ--EIPFD-KVIFVRVTQTPDV--KRVQD--EI 231 (1074)
Q Consensus 159 ~~~~~~r~~~~~~l~~~l~~~~~~~~vi~I~G~gG~GKTtLa~~v~~~--~~~F~-~~~wv~vs~~~~~--~~~~~--~i 231 (1074)
+..+.|++..++.+..++..+. .+.+.++|++|+||||+|+.+.+. ...+. ..+.+++++..+. ..+.. ..
T Consensus 14 ~~~~~g~~~~~~~L~~~~~~~~--~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 91 (337)
T PRK12402 14 LEDILGQDEVVERLSRAVDSPN--LPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFFDQGKKYLVEDPRF 91 (337)
T ss_pred HHHhcCCHHHHHHHHHHHhCCC--CceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhhhcchhhhhcCcch
Confidence 3345577888888878776654 567889999999999999999887 33322 2345554432100 00000 00
Q ss_pred HHHhccC-CCcchHHHHHHHHHHHHH-----ccCeEEEEEcCccccc--cccccccCCCCCCCCeEEEEecCChh-HHhh
Q 001457 232 ARFLNTE-LEGDVEVLRAAFLSERLK-----RQKRVLIILDDLWGKL--DLAVVGIPYGEEHKGCKIILTSRFKE-VCDE 302 (1074)
Q Consensus 232 ~~~l~~~-~~~~~~~~~~~~l~~~l~-----~~k~~LlVlDdv~~~~--~~~~~~~~~~~~~~gs~iivTTR~~~-v~~~ 302 (1074)
...++.. ............+.+... .+.+-+||+||+.... ....+...+......+++|+||.... +...
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~~~~~ 171 (337)
T PRK12402 92 AHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKLIPP 171 (337)
T ss_pred hhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhhCchh
Confidence 0000000 000001111222221111 1344589999996542 22223222222234567887775432 2222
Q ss_pred c-cCCCeEeCCCCCHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhCCChHHH
Q 001457 303 M-ESTNYVQVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLPNAI 354 (1074)
Q Consensus 303 ~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~i~~~c~glPLai 354 (1074)
. .....+++.+++.++....+.+.+.... ..--.+....+++.++|-+-.+
T Consensus 172 L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~-~~~~~~al~~l~~~~~gdlr~l 223 (337)
T PRK12402 172 IRSRCLPLFFRAPTDDELVDVLESIAEAEG-VDYDDDGLELIAYYAGGDLRKA 223 (337)
T ss_pred hcCCceEEEecCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHH
Confidence 2 2225788999999999888887764211 1223567888889998866444
No 83
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.09 E-value=5.9e-05 Score=86.82 Aligned_cols=187 Identities=17% Similarity=0.194 Sum_probs=104.2
Q ss_pred CCCcccCcchHHHHHHHHHHHhcCCCceeEEEEEcCCCCcHHHHHHHHHhh--cCC--------------------CCeE
Q 001457 156 TPEFVPLKSALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ--EIP--------------------FDKV 213 (1074)
Q Consensus 156 ~~~~~~~~~r~~~~~~l~~~l~~~~~~~~vi~I~G~gG~GKTtLa~~v~~~--~~~--------------------F~~~ 213 (1074)
+..+..+.|.+.....+...+..+. -.+.+.++|++|+||||+|+.+.+. ... +...
T Consensus 10 P~~~~divGq~~i~~~L~~~i~~~~-l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv 88 (472)
T PRK14962 10 PKTFSEVVGQDHVKKLIINALKKNS-ISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDV 88 (472)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCcc
Confidence 3344456677766666666666554 1356889999999999999999877 110 1112
Q ss_pred EEEEecCCcCHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHccCeEEEEEcCcccc--ccccccccCCCCCCCCeEEE
Q 001457 214 IFVRVTQTPDVKRVQDEIARFLNTELEGDVEVLRAAFLSERLKRQKRVLIILDDLWGK--LDLAVVGIPYGEEHKGCKII 291 (1074)
Q Consensus 214 ~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~--~~~~~~~~~~~~~~~gs~ii 291 (1074)
+.++.+....+..+ ++|...... .-. .+++-++|+|++..- ...+.+...+........+|
T Consensus 89 ~el~aa~~~gid~i-R~i~~~~~~---------------~p~-~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~I 151 (472)
T PRK14962 89 IELDAASNRGIDEI-RKIRDAVGY---------------RPM-EGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFV 151 (472)
T ss_pred EEEeCcccCCHHHH-HHHHHHHhh---------------Chh-cCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEE
Confidence 22232222222221 122211110 001 256779999998743 33344433333222344544
Q ss_pred E-ecCChhHHhhc-cCCCeEeCCCCCHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhCC-ChHHHHHHHHHH
Q 001457 292 L-TSRFKEVCDEM-ESTNYVQVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGK-LPNAIVIIGTAL 361 (1074)
Q Consensus 292 v-TTR~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~i~~~c~g-lPLai~~~~~~l 361 (1074)
+ ||....+.... .....+++++++.++....+.+.+.... ..-.++....|++.++| ++.|+..+..+.
T Consensus 152 lattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~eg-i~i~~eal~~Ia~~s~GdlR~aln~Le~l~ 223 (472)
T PRK14962 152 LATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEG-IEIDREALSFIAKRASGGLRDALTMLEQVW 223 (472)
T ss_pred EEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 4 44434443333 2336889999999998888887764211 12234667788888865 566766665543
No 84
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.09 E-value=3.3e-05 Score=87.20 Aligned_cols=191 Identities=12% Similarity=0.077 Sum_probs=106.5
Q ss_pred CCCcccCcchHHHHHHHHHHHhcCCCce-eEEEEEcCCCCcHHHHHHHHHhh--cCCCCeEEEEEecCCcCHHHHHHHHH
Q 001457 156 TPEFVPLKSALEVIKSVMKLLKDNSISI-NIIGVYGSGGIGKTTLMKQVMKQ--EIPFDKVIFVRVTQTPDVKRVQDEIA 232 (1074)
Q Consensus 156 ~~~~~~~~~r~~~~~~l~~~l~~~~~~~-~vi~I~G~gG~GKTtLa~~v~~~--~~~F~~~~wv~vs~~~~~~~~~~~i~ 232 (1074)
+..+..+.|.+..+..+..++..+. + ..+.++|+.|+||||+|+.+.+. ..+.... ..+.....-..+...+.
T Consensus 14 P~~f~dvVGQe~iv~~L~~~i~~~r--i~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~--~pCg~C~sC~~i~~g~~ 89 (484)
T PRK14956 14 PQFFRDVIHQDLAIGALQNALKSGK--IGHAYIFFGPRGVGKTTIARILAKRLNCENPIGN--EPCNECTSCLEITKGIS 89 (484)
T ss_pred CCCHHHHhChHHHHHHHHHHHHcCC--CCeEEEEECCCCCCHHHHHHHHHHhcCcccccCc--cccCCCcHHHHHHccCC
Confidence 4455556777878888888877665 4 45889999999999999999887 2111100 00111111111111110
Q ss_pred HHhccCCCc--chHHHHHHHHHHHHH----ccCeEEEEEcCcccc--ccccccccCCCCCCCCeEEE-EecCChhHHhhc
Q 001457 233 RFLNTELEG--DVEVLRAAFLSERLK----RQKRVLIILDDLWGK--LDLAVVGIPYGEEHKGCKII-LTSRFKEVCDEM 303 (1074)
Q Consensus 233 ~~l~~~~~~--~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~~~~~~~~~~~gs~ii-vTTR~~~v~~~~ 303 (1074)
..+.. .+. ....+.+..+.+.+. .++.-++|+|++..- ..++.+...+-.......+| .||....+....
T Consensus 90 ~dviE-Idaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI 168 (484)
T PRK14956 90 SDVLE-IDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETI 168 (484)
T ss_pred cccee-echhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHH
Confidence 00000 000 000111222222221 356779999999853 44555543333323345555 455545553332
Q ss_pred -cCCCeEeCCCCCHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhCCChH
Q 001457 304 -ESTNYVQVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLPN 352 (1074)
Q Consensus 304 -~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~i~~~c~glPL 352 (1074)
.....|.+.+++.++-.+.+.+.+.... ..-..+....|++.++|-+-
T Consensus 169 ~SRCq~~~f~~ls~~~i~~~L~~i~~~Eg-i~~e~eAL~~Ia~~S~Gd~R 217 (484)
T PRK14956 169 LSRCQDFIFKKVPLSVLQDYSEKLCKIEN-VQYDQEGLFWIAKKGDGSVR 217 (484)
T ss_pred HhhhheeeecCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCChHH
Confidence 2336799999999998888877764211 22235678889999999883
No 85
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.06 E-value=1.7e-07 Score=94.81 Aligned_cols=183 Identities=23% Similarity=0.176 Sum_probs=94.0
Q ss_pred CccEEEeeCCCCc--ccCccccCCCCCCEEeCCCCcCCCCcChhhhcCCCCcCEEEccCCcCCccccccccCCCCCcccc
Q 001457 601 ELEVLILKGSRIV--ELPNGIGTVSNLKLLDLSNNLFLQVIPPNVISKLSQLEELYVGNSFGDWEVEETANGQNARFSEV 678 (1074)
Q Consensus 601 ~L~~L~L~~~~i~--~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l 678 (1074)
.||+|||++..|+ .+..-+..+.+|+.|.+.++..-..+... +.+-.+|+.|+++.|.+... ++.-.-+
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~-iAkN~~L~~lnlsm~sG~t~--------n~~~ll~ 256 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNT-IAKNSNLVRLNLSMCSGFTE--------NALQLLL 256 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHH-Hhccccceeeccccccccch--------hHHHHHH
Confidence 3677777776655 33334556666777777666544333322 56666677776666532110 0001113
Q ss_pred ccCcCCCEEEEeecCccccccCcCCCCCCccEEEEEecCcccCCCccceeEeccchhhhHHHHHHHHhccceeeeccCCC
Q 001457 679 ASLTRLTVLYIHVSNTKVLSVDFDGPWTNLKRFRVCVNDDYWEIAPKRSMHLKNLSNSIASWVKLLLEKTEYLTLTRSSN 758 (1074)
Q Consensus 679 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~ 758 (1074)
.+++.|..|.++|+.. ..+. ....+...-++|..|+|++|..
T Consensus 257 ~scs~L~~LNlsWc~l------------------------~~~~--------------Vtv~V~hise~l~~LNlsG~rr 298 (419)
T KOG2120|consen 257 SSCSRLDELNLSWCFL------------------------FTEK--------------VTVAVAHISETLTQLNLSGYRR 298 (419)
T ss_pred HhhhhHhhcCchHhhc------------------------cchh--------------hhHHHhhhchhhhhhhhhhhHh
Confidence 4555566666665542 2111 1111222225555666655532
Q ss_pred ccccccc--ccccCCCccEEEEeccccccccccCcccccccceeEEEeeecccc--eeecccccccccccCCCcceeecC
Q 001457 759 LQDIGEI--DVQGFTGLMCMHLRACSMQRIFHSNFYPTVQILEELHVEYCYSLK--EVFCLEDIEGEQAGLKRLRELVLV 834 (1074)
Q Consensus 759 l~~~~~l--~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~--~~~~~~~~~~~~~~~~~L~~L~L~ 834 (1074)
.-....+ -...+|+|.+|+|++|......-...+-+++.|++|.++.|+.+. .+..+.. .|+|..|++.
T Consensus 299 nl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s-------~psl~yLdv~ 371 (419)
T KOG2120|consen 299 NLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNS-------KPSLVYLDVF 371 (419)
T ss_pred hhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeecc-------CcceEEEEec
Confidence 2111111 123567777777777743332223334567777788887777542 1222333 7888888888
Q ss_pred Ccc
Q 001457 835 GLP 837 (1074)
Q Consensus 835 ~~~ 837 (1074)
+|-
T Consensus 372 g~v 374 (419)
T KOG2120|consen 372 GCV 374 (419)
T ss_pred ccc
Confidence 873
No 86
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.04 E-value=2.3e-06 Score=86.84 Aligned_cols=98 Identities=18% Similarity=0.306 Sum_probs=49.0
Q ss_pred CccEEEecCCccCCCCC--Cc-cCCccCCeeeccCCCCCC----CccccCCCCccEEEeeCCCCc----ccCccccCCCC
Q 001457 556 EIKNLDLSSTNISSLAP--SL-PCLEKLRSLHLENTHLND----ASLIREFGELEVLILKGSRIV----ELPNGIGTVSN 624 (1074)
Q Consensus 556 ~L~~L~l~~~~~~~lp~--~i-~~l~~Lr~L~L~~~~l~~----~~~i~~l~~L~~L~L~~~~i~----~lp~~i~~L~~ 624 (1074)
.+..|.+.++.|...-. .+ ..+.+++.|+|.+|.|++ ...+.+|+.|++|+|+.|.+. .+| -.+.+
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp---~p~~n 122 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP---LPLKN 122 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc---ccccc
Confidence 34455555665543322 22 345667777777777766 222345666666666666433 333 23445
Q ss_pred CCEEeCCCCcCCCCcChhhhcCCCCcCEEEcc
Q 001457 625 LKLLDLSNNLFLQVIPPNVISKLSQLEELYVG 656 (1074)
Q Consensus 625 L~~L~l~~~~~~~~~p~~~i~~L~~L~~L~l~ 656 (1074)
|+.|-+.++.....-....+..++.+++|+++
T Consensus 123 l~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS 154 (418)
T KOG2982|consen 123 LRVLVLNGTGLSWTQSTSSLDDLPKVTELHMS 154 (418)
T ss_pred eEEEEEcCCCCChhhhhhhhhcchhhhhhhhc
Confidence 66666655443222222223444444444443
No 87
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.03 E-value=6.2e-05 Score=85.03 Aligned_cols=173 Identities=16% Similarity=0.182 Sum_probs=96.5
Q ss_pred cccCcchHHHHHHHHHHHhcC----C-------CceeEEEEEcCCCCcHHHHHHHHHhh-cCCCCeEEEEEecCCcCHHH
Q 001457 159 FVPLKSALEVIKSVMKLLKDN----S-------ISINIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKR 226 (1074)
Q Consensus 159 ~~~~~~r~~~~~~l~~~l~~~----~-------~~~~vi~I~G~gG~GKTtLa~~v~~~-~~~F~~~~wv~vs~~~~~~~ 226 (1074)
+..+.|.++.++++.+.+... + ...+-|.++|++|+|||++|+.+++. ...| +.+.. ..
T Consensus 121 ~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~-----~~v~~----~~ 191 (364)
T TIGR01242 121 YEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATF-----IRVVG----SE 191 (364)
T ss_pred HHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCE-----Eecch----HH
Confidence 334567777777776655311 0 12456899999999999999999998 5444 22221 11
Q ss_pred HHHHHHHHhccCCCcchHHHHHHHHHHHHHccCeEEEEEcCccccc----------------cccccccCCC--CCCCCe
Q 001457 227 VQDEIARFLNTELEGDVEVLRAAFLSERLKRQKRVLIILDDLWGKL----------------DLAVVGIPYG--EEHKGC 288 (1074)
Q Consensus 227 ~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~----------------~~~~~~~~~~--~~~~gs 288 (1074)
+... .++ . .......+.+......+.+|++||++... .+..+...+. ....+.
T Consensus 192 l~~~---~~g-----~-~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v 262 (364)
T TIGR01242 192 LVRK---YIG-----E-GARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNV 262 (364)
T ss_pred HHHH---hhh-----H-HHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCE
Confidence 1111 011 0 11112222233333567899999987531 0111111111 112467
Q ss_pred EEEEecCChhH-----HhhccCCCeEeCCCCCHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhCCCh
Q 001457 289 KIILTSRFKEV-----CDEMESTNYVQVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLP 351 (1074)
Q Consensus 289 ~iivTTR~~~v-----~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~i~~~c~glP 351 (1074)
+||.||...+. ......+..+.+...+.++..++|..++......++ .....+++.+.|..
T Consensus 263 ~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~--~~~~~la~~t~g~s 328 (364)
T TIGR01242 263 KVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAED--VDLEAIAKMTEGAS 328 (364)
T ss_pred EEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCcc--CCHHHHHHHcCCCC
Confidence 88888875433 111122467899999999999999888753222211 11456777777754
No 88
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.02 E-value=0.0001 Score=85.71 Aligned_cols=184 Identities=14% Similarity=0.171 Sum_probs=106.3
Q ss_pred CCCcccCcchHHHHHHHHHHHhcCCCceeEEEEEcCCCCcHHHHHHHHHhh-cC---------------------CCCeE
Q 001457 156 TPEFVPLKSALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ-EI---------------------PFDKV 213 (1074)
Q Consensus 156 ~~~~~~~~~r~~~~~~l~~~l~~~~~~~~vi~I~G~gG~GKTtLa~~v~~~-~~---------------------~F~~~ 213 (1074)
+..|..+.|.+..++.+...+..+. ....+.++|+.|+||||+|+.+.+. .. .|...
T Consensus 12 P~~f~diiGq~~~v~~L~~~i~~~r-l~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dl 90 (546)
T PRK14957 12 PQSFAEVAGQQHALNSLVHALETQK-VHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDL 90 (546)
T ss_pred cCcHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCce
Confidence 3445556678888888888887654 2355789999999999999999876 11 12222
Q ss_pred EEEEecCCcCHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHccCeEEEEEcCcccc--ccccccccCCCCCCCCeEEE
Q 001457 214 IFVRVTQTPDVKRVQDEIARFLNTELEGDVEVLRAAFLSERLKRQKRVLIILDDLWGK--LDLAVVGIPYGEEHKGCKII 291 (1074)
Q Consensus 214 ~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~--~~~~~~~~~~~~~~~gs~ii 291 (1074)
+++.......+.++ ++++. .+...-..+++-++|+|++..- ..++.+...+......+++|
T Consensus 91 ieidaas~~gvd~i-r~ii~----------------~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fI 153 (546)
T PRK14957 91 IEIDAASRTGVEET-KEILD----------------NIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFI 153 (546)
T ss_pred EEeecccccCHHHH-HHHHH----------------HHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEE
Confidence 33322222222111 11111 1111111356779999998743 33444443333333455555
Q ss_pred -EecCChhHHhh-ccCCCeEeCCCCCHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhCCCh-HHHHHHH
Q 001457 292 -LTSRFKEVCDE-MESTNYVQVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLP-NAIVIIG 358 (1074)
Q Consensus 292 -vTTR~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~i~~~c~glP-Lai~~~~ 358 (1074)
+||....+... ......+++++++.++-.+.+.+.+.... ..-..+....|++.++|-+ -|+..+-
T Consensus 154 L~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~eg-i~~e~~Al~~Ia~~s~GdlR~alnlLe 222 (546)
T PRK14957 154 LATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKEN-INSDEQSLEYIAYHAKGSLRDALSLLD 222 (546)
T ss_pred EEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 45544444322 22336899999999998877776554211 2233556778999999966 3444443
No 89
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.02 E-value=9.1e-05 Score=82.66 Aligned_cols=178 Identities=12% Similarity=0.128 Sum_probs=101.6
Q ss_pred CCcccCcchHHHHHHHHHHHhcCCCceeEEEEEcCCCCcHHHHHHHHHhh--cCCCCeEEEEEe--cCCcCHHHHHHHHH
Q 001457 157 PEFVPLKSALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ--EIPFDKVIFVRV--TQTPDVKRVQDEIA 232 (1074)
Q Consensus 157 ~~~~~~~~r~~~~~~l~~~l~~~~~~~~vi~I~G~gG~GKTtLa~~v~~~--~~~F~~~~wv~v--s~~~~~~~~~~~i~ 232 (1074)
..+-.+.|+++.++.+..++.... .+.+.++|.+|+||||+|+.+.+. ...+.. .++.+ +...... ...+.+
T Consensus 14 ~~~~~~~g~~~~~~~l~~~i~~~~--~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~-~~i~~~~~~~~~~~-~~~~~i 89 (319)
T PRK00440 14 RTLDEIVGQEEIVERLKSYVKEKN--MPHLLFAGPPGTGKTTAALALARELYGEDWRE-NFLELNASDERGID-VIRNKI 89 (319)
T ss_pred CcHHHhcCcHHHHHHHHHHHhCCC--CCeEEEECCCCCCHHHHHHHHHHHHcCCcccc-ceEEeccccccchH-HHHHHH
Confidence 344446678888888888887655 556799999999999999999988 333321 22333 2222111 111111
Q ss_pred HHhccCCCcchHHHHHHHHHHHHHccCeEEEEEcCcccc--ccccccccCCCCCCCCeEEEEecCCh-hHHhhc-cCCCe
Q 001457 233 RFLNTELEGDVEVLRAAFLSERLKRQKRVLIILDDLWGK--LDLAVVGIPYGEEHKGCKIILTSRFK-EVCDEM-ESTNY 308 (1074)
Q Consensus 233 ~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~--~~~~~~~~~~~~~~~gs~iivTTR~~-~v~~~~-~~~~~ 308 (1074)
..+..... .....+-+|++|+++.. +....+...+......+++|+++... .+.... .....
T Consensus 90 ~~~~~~~~--------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~ 155 (319)
T PRK00440 90 KEFARTAP--------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAV 155 (319)
T ss_pred HHHHhcCC--------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhhe
Confidence 11100000 00124568999998643 22233332222223456777766432 221111 12247
Q ss_pred EeCCCCCHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhCCChHH
Q 001457 309 VQVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLPNA 353 (1074)
Q Consensus 309 ~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~i~~~c~glPLa 353 (1074)
++++++++++....+...+.... ..-..+....+++.++|-+--
T Consensus 156 ~~~~~l~~~ei~~~l~~~~~~~~-~~i~~~al~~l~~~~~gd~r~ 199 (319)
T PRK00440 156 FRFSPLKKEAVAERLRYIAENEG-IEITDDALEAIYYVSEGDMRK 199 (319)
T ss_pred eeeCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHH
Confidence 89999999999888887765211 122356788889999998754
No 90
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.01 E-value=0.00014 Score=73.94 Aligned_cols=155 Identities=17% Similarity=0.173 Sum_probs=89.1
Q ss_pred HHHHHhcCCCceeEEEEEcCCCCcHHHHHHHHHhh--cC---------------------CCCeEEEEEecC-CcCHHHH
Q 001457 172 VMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ--EI---------------------PFDKVIFVRVTQ-TPDVKRV 227 (1074)
Q Consensus 172 l~~~l~~~~~~~~vi~I~G~gG~GKTtLa~~v~~~--~~---------------------~F~~~~wv~vs~-~~~~~~~ 227 (1074)
+.+.+..+. -...+.++|+.|+||||+|+.+... .. +.|. .++.... ...+ +.
T Consensus 4 l~~~i~~~~-~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~-~~~~~~~~~~~~-~~ 80 (188)
T TIGR00678 4 LKRALEKGR-LAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDL-HRLEPEGQSIKV-DQ 80 (188)
T ss_pred HHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcE-EEeccccCcCCH-HH
Confidence 444454443 1367889999999999999998877 21 1122 2222111 1111 11
Q ss_pred HHHHHHHhccCCCcchHHHHHHHHHHHHHccCeEEEEEcCcccc--ccccccccCCCCCCCCeEEEEecCCh-hHHhhc-
Q 001457 228 QDEIARFLNTELEGDVEVLRAAFLSERLKRQKRVLIILDDLWGK--LDLAVVGIPYGEEHKGCKIILTSRFK-EVCDEM- 303 (1074)
Q Consensus 228 ~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~--~~~~~~~~~~~~~~~gs~iivTTR~~-~v~~~~- 303 (1074)
.+++.+.+... -. .+.+-++|+||+..- ..++.+...+......+.+|++|++. .+....
T Consensus 81 i~~i~~~~~~~---------------~~-~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~ 144 (188)
T TIGR00678 81 VRELVEFLSRT---------------PQ-ESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIR 144 (188)
T ss_pred HHHHHHHHccC---------------cc-cCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHH
Confidence 11222221100 01 256778999998753 33444443333333456677666543 332222
Q ss_pred cCCCeEeCCCCCHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhCCChH
Q 001457 304 ESTNYVQVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLPN 352 (1074)
Q Consensus 304 ~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~i~~~c~glPL 352 (1074)
.....+++.+++.++..+.+.+. + . ..+.+..|++.++|.|.
T Consensus 145 sr~~~~~~~~~~~~~~~~~l~~~-g--i----~~~~~~~i~~~~~g~~r 186 (188)
T TIGR00678 145 SRCQVLPFPPLSEEALLQWLIRQ-G--I----SEEAAELLLALAGGSPG 186 (188)
T ss_pred hhcEEeeCCCCCHHHHHHHHHHc-C--C----CHHHHHHHHHHcCCCcc
Confidence 22358999999999988888776 2 1 14678899999999885
No 91
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.99 E-value=1.3e-05 Score=88.07 Aligned_cols=136 Identities=18% Similarity=0.249 Sum_probs=88.5
Q ss_pred CCCcceeecCCccCcceeeccccccccccccceEEEecCCCccccccchhHhhhcCCCceecccccccceeeccchhhHh
Q 001457 825 LKRLRELVLVGLPKVLTIWKGNHSVVYLKTLKLMKVKDCGKLRYLFSRTLAEGLGNLEDLSILKCDLMEEIVSVDEAEVE 904 (1074)
Q Consensus 825 ~~~L~~L~L~~~~~L~~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~ 904 (1074)
+++++.|++++| +|+.++. ..++|+.|.+.+|++|+.++ ..+ .++|++|.+++|..+..++
T Consensus 51 ~~~l~~L~Is~c-~L~sLP~------LP~sLtsL~Lsnc~nLtsLP--~~L--P~nLe~L~Ls~Cs~L~sLP-------- 111 (426)
T PRK15386 51 ARASGRLYIKDC-DIESLPV------LPNELTEITIENCNNLTTLP--GSI--PEGLEKLTVCHCPEISGLP-------- 111 (426)
T ss_pred hcCCCEEEeCCC-CCcccCC------CCCCCcEEEccCCCCcccCC--chh--hhhhhheEccCcccccccc--------
Confidence 688999999999 7777651 22469999999999998773 222 3689999999987765432
Q ss_pred hhhhhccccccCCCCcccCCceEEEecc--cccccccccccccccccCccEEEEeeccCcceeecccchhhcccCccccc
Q 001457 905 QGAAQERNVSSAPQPMFFPNLKKLLIGK--CNKMKRVLSLTNAHNLKQLEELTVASCNHMERIITVSDEEKAAENKNVLP 982 (1074)
Q Consensus 905 ~~~l~~l~l~~~~~~~~~~~L~~L~l~~--C~~L~~~~~~~~~~~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~l~ 982 (1074)
++|++|+|.. |..+..++ ++|++|.+.++....... ......+
T Consensus 112 ------------------~sLe~L~L~~n~~~~L~~LP--------ssLk~L~I~~~n~~~~~~---------lp~~LPs 156 (426)
T PRK15386 112 ------------------ESVRSLEIKGSATDSIKNVP--------NGLTSLSINSYNPENQAR---------IDNLISP 156 (426)
T ss_pred ------------------cccceEEeCCCCCcccccCc--------chHhheeccccccccccc---------cccccCC
Confidence 5688888752 22233321 367788875433111000 0112336
Q ss_pred ccccccccccccccccccCccccccCCCccEEEEeCCC
Q 001457 983 KLKILALEDLPELDSVYNGEIAALRWPSLEELKVWDCP 1020 (1074)
Q Consensus 983 ~L~~L~l~~c~~L~~i~~~~~~~~~~~~L~~L~i~~C~ 1020 (1074)
+|++|.+.+|..+. +| ..++ .+|++|.+..+.
T Consensus 157 SLk~L~Is~c~~i~-LP-~~LP----~SLk~L~ls~n~ 188 (426)
T PRK15386 157 SLKTLSLTGCSNII-LP-EKLP----ESLQSITLHIEQ 188 (426)
T ss_pred cccEEEecCCCccc-Cc-cccc----ccCcEEEecccc
Confidence 89999999998653 33 2243 589999997753
No 92
>COG3899 Predicted ATPase [General function prediction only]
Probab=97.97 E-value=0.0003 Score=87.27 Aligned_cols=260 Identities=15% Similarity=0.134 Sum_probs=148.1
Q ss_pred CcchHHHHHHHHHHHhcCC-CceeEEEEEcCCCCcHHHHHHHHHhh-cCCCCeEEEEEec---CCc---CHHHHHHHHHH
Q 001457 162 LKSALEVIKSVMKLLKDNS-ISINIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVT---QTP---DVKRVQDEIAR 233 (1074)
Q Consensus 162 ~~~r~~~~~~l~~~l~~~~-~~~~vi~I~G~gG~GKTtLa~~v~~~-~~~F~~~~wv~vs---~~~---~~~~~~~~i~~ 233 (1074)
+.||+.+++.++..+..-. ..-.++.|.|..|+|||+|++.|... .+.+...+--.+. .+. .....+++++.
T Consensus 2 l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~~~i~~~f~q~~~~ipl~~lvq~~r~l~~ 81 (849)
T COG3899 2 LYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQRGYFIKGKFDQFERNIPLSPLVQAFRDLMG 81 (849)
T ss_pred CCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhccceeeeHhhcccccCCCchHHHHHHHHHHHH
Confidence 4578888888888775432 23569999999999999999999988 3332222111111 111 12233334433
Q ss_pred Hh-------------------ccCC--------------C---------cchHHHH-----HHHHHHHHHccCeEEEEEc
Q 001457 234 FL-------------------NTEL--------------E---------GDVEVLR-----AAFLSERLKRQKRVLIILD 266 (1074)
Q Consensus 234 ~l-------------------~~~~--------------~---------~~~~~~~-----~~~l~~~l~~~k~~LlVlD 266 (1074)
++ +... . +.....+ ...+.....+.++.++|+|
T Consensus 82 ~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi~le 161 (849)
T COG3899 82 QLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVIVLE 161 (849)
T ss_pred HHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEEEEe
Confidence 33 1100 0 0000111 1223333345679999999
Q ss_pred Cccccc--cc---cccccCCCC-CCCCeEEEE--ecCCh--hHHhhccCCCeEeCCCCCHHHHHHHHHHhcCCCCCCchh
Q 001457 267 DLWGKL--DL---AVVGIPYGE-EHKGCKIIL--TSRFK--EVCDEMESTNYVQVEELTDEDRLILFKKKAGLPEGTKAF 336 (1074)
Q Consensus 267 dv~~~~--~~---~~~~~~~~~-~~~gs~iiv--TTR~~--~v~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~ 336 (1074)
|+.-.+ .+ +.+...... ...-..|.. |.+.. .+.........+.|.||+..+.-.+.....+.. ....
T Consensus 162 DlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~--~~~~ 239 (849)
T COG3899 162 DLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCT--KLLP 239 (849)
T ss_pred cccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCc--cccc
Confidence 984211 11 111111100 001122333 33322 112222333689999999999999998887632 2334
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHcCC-------ChhHHHHHHHHHhhCCCCCCCCchHHHHHHHHHhhcCChhhHHHH
Q 001457 337 DRAAEEVVRQCGKLPNAIVIIGTALRHK-------PVREWNEAIKRKKASTPINVEGIPEEVVLCVALGYDQLETVAKSC 409 (1074)
Q Consensus 337 ~~~~~~i~~~c~glPLai~~~~~~l~~~-------~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~c 409 (1074)
.+..+.|+++..|.|+-+.-+-..+... +...|+.-...+. . ....+.+...+..-.+.||...+..
T Consensus 240 ~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~-----~-~~~~~~vv~~l~~rl~kL~~~t~~V 313 (849)
T COG3899 240 APLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLG-----I-LATTDAVVEFLAARLQKLPGTTREV 313 (849)
T ss_pred chHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcC-----C-chhhHHHHHHHHHHHhcCCHHHHHH
Confidence 5778899999999999998888888542 2334443222111 1 1112446667888899999999998
Q ss_pred HHhhcCCCCCCccchHHHHHHH
Q 001457 410 LQFSCLFPPYYSVSMEEFVIHG 431 (1074)
Q Consensus 410 f~~~s~fp~~~~i~~~~li~~w 431 (1074)
.-..|++-. .|+.+.|...|
T Consensus 314 l~~AA~iG~--~F~l~~La~l~ 333 (849)
T COG3899 314 LKAAACIGN--RFDLDTLAALA 333 (849)
T ss_pred HHHHHHhCc--cCCHHHHHHHH
Confidence 888887753 45555555444
No 93
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=97.97 E-value=0.00018 Score=79.58 Aligned_cols=193 Identities=11% Similarity=0.086 Sum_probs=108.4
Q ss_pred cccCcchHHHHHHHHHHHhcCCCceeEEEEEcCCCCcHHHHHHHHHhh--cCC---CCeEEEEEecCCcCHHHHHHHHHH
Q 001457 159 FVPLKSALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ--EIP---FDKVIFVRVTQTPDVKRVQDEIAR 233 (1074)
Q Consensus 159 ~~~~~~r~~~~~~l~~~l~~~~~~~~vi~I~G~gG~GKTtLa~~v~~~--~~~---F~~~~wv~vs~~~~~~~~~~~i~~ 233 (1074)
+..+.|.++....+...+..+. ....+.|+|+.|+||||+|+.+... ... +.... ....+......+.+..
T Consensus 22 ~~~l~Gh~~a~~~L~~a~~~gr-l~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~---~~~~~~~c~~c~~i~~ 97 (351)
T PRK09112 22 NTRLFGHEEAEAFLAQAYREGK-LHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPET---LADPDPASPVWRQIAQ 97 (351)
T ss_pred hhhccCcHHHHHHHHHHHHcCC-CCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccc---cCCCCCCCHHHHHHHc
Confidence 3346678888888888877654 2346889999999999999999888 211 22111 1111111123333322
Q ss_pred Hhc-------cCCC-------cchHHHHHHHHHHHHH----ccCeEEEEEcCcccc--ccccccccCCCCCCCCeE-EEE
Q 001457 234 FLN-------TELE-------GDVEVLRAAFLSERLK----RQKRVLIILDDLWGK--LDLAVVGIPYGEEHKGCK-IIL 292 (1074)
Q Consensus 234 ~l~-------~~~~-------~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~~~~~~~~~~~gs~-iiv 292 (1074)
.-. ...+ .....+.+..+.+++. .+++-++|+|+++.- ...+.+...+.....+.. |++
T Consensus 98 ~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~fiLi 177 (351)
T PRK09112 98 GAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALFILI 177 (351)
T ss_pred CCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceEEEE
Confidence 211 0000 0011223334444443 367779999999853 223333222222122344 555
Q ss_pred ecCChhHHhhc-cCCCeEeCCCCCHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhCCChHHHHHHH
Q 001457 293 TSRFKEVCDEM-ESTNYVQVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLPNAIVIIG 358 (1074)
Q Consensus 293 TTR~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~i~~~c~glPLai~~~~ 358 (1074)
|++...+.... .....+++.+++.++..+++.+...... -..+....|++.++|.|.....+.
T Consensus 178 t~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~~---~~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 178 SHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQG---SDGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred ECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcccC---CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 55544443222 2236899999999999999987432111 224557789999999997655443
No 94
>PRK09087 hypothetical protein; Validated
Probab=97.95 E-value=9.8e-05 Score=76.70 Aligned_cols=140 Identities=14% Similarity=0.111 Sum_probs=85.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhhcCCCCeEEEEEecCCcCHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHccCeEE
Q 001457 183 INIIGVYGSGGIGKTTLMKQVMKQEIPFDKVIFVRVTQTPDVKRVQDEIARFLNTELEGDVEVLRAAFLSERLKRQKRVL 262 (1074)
Q Consensus 183 ~~vi~I~G~gG~GKTtLa~~v~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~L 262 (1074)
.+.+.|+|..|+|||+|++.++... ...|++.. .+..+++ ..+. .-+
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~----~~~~i~~~------~~~~~~~--------------------~~~~---~~~ 90 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKS----DALLIHPN------EIGSDAA--------------------NAAA---EGP 90 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhc----CCEEecHH------HcchHHH--------------------Hhhh---cCe
Confidence 4678999999999999999888651 11244321 1111111 1111 137
Q ss_pred EEEcCccccc-cccccccCCCC-CCCCeEEEEecCC---------hhHHhhccCCCeEeCCCCCHHHHHHHHHHhcCCCC
Q 001457 263 IILDDLWGKL-DLAVVGIPYGE-EHKGCKIILTSRF---------KEVCDEMESTNYVQVEELTDEDRLILFKKKAGLPE 331 (1074)
Q Consensus 263 lVlDdv~~~~-~~~~~~~~~~~-~~~gs~iivTTR~---------~~v~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~ 331 (1074)
|++||+.... +-+.+..-+.. ...|..||+|++. ++....+....+++++++++++-.+++.+++...
T Consensus 91 l~iDDi~~~~~~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~~- 169 (226)
T PRK09087 91 VLIEDIDAGGFDETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFADR- 169 (226)
T ss_pred EEEECCCCCCCCHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHHHHc-
Confidence 8889996431 11111111111 1236778988863 3344555566789999999999999999888632
Q ss_pred CCchhHHHHHHHHHHhCCChHHHHH
Q 001457 332 GTKAFDRAAEEVVRQCGKLPNAIVI 356 (1074)
Q Consensus 332 ~~~~~~~~~~~i~~~c~glPLai~~ 356 (1074)
...--+++..-|++.+.|-.-++..
T Consensus 170 ~~~l~~ev~~~La~~~~r~~~~l~~ 194 (226)
T PRK09087 170 QLYVDPHVVYYLVSRMERSLFAAQT 194 (226)
T ss_pred CCCCCHHHHHHHHHHhhhhHHHHHH
Confidence 1223367788888888887765554
No 95
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=97.94 E-value=0.00013 Score=86.14 Aligned_cols=195 Identities=12% Similarity=0.089 Sum_probs=105.8
Q ss_pred CCCcccCcchHHHHHHHHHHHhcCCCceeEEEEEcCCCCcHHHHHHHHHhh-cCCCCeEEEEEecCCcCHHHHHHHHHHH
Q 001457 156 TPEFVPLKSALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKRVQDEIARF 234 (1074)
Q Consensus 156 ~~~~~~~~~r~~~~~~l~~~l~~~~~~~~vi~I~G~gG~GKTtLa~~v~~~-~~~F~~~~wv~vs~~~~~~~~~~~i~~~ 234 (1074)
+..|..+.|.+..++.+...+..+. -...+.++|..|+||||+|+.+.+. ..... + ....+..-...+.|...
T Consensus 12 P~~f~divGQe~vv~~L~~~l~~~r-l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~----~-~~~pCg~C~~C~~i~~g 85 (647)
T PRK07994 12 PQTFAEVVGQEHVLTALANALDLGR-LHHAYLFSGTRGVGKTTIARLLAKGLNCETG----I-TATPCGECDNCREIEQG 85 (647)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhhhhccC----C-CCCCCCCCHHHHHHHcC
Confidence 3445556778888888888877665 1245689999999999999999877 11100 0 00011111111122110
Q ss_pred hccC---CCcc--hHHHHHHHHHHHH----HccCeEEEEEcCcccc--ccccccccCCCCCCCCeEEEEe-cCChhHHhh
Q 001457 235 LNTE---LEGD--VEVLRAAFLSERL----KRQKRVLIILDDLWGK--LDLAVVGIPYGEEHKGCKIILT-SRFKEVCDE 302 (1074)
Q Consensus 235 l~~~---~~~~--~~~~~~~~l~~~l----~~~k~~LlVlDdv~~~--~~~~~~~~~~~~~~~gs~iivT-TR~~~v~~~ 302 (1074)
-..+ .+.. ...+....+.+.+ ..+++-++|+|++..- ...+.+...+-......++|.+ |....+...
T Consensus 86 ~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~T 165 (647)
T PRK07994 86 RFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVT 165 (647)
T ss_pred CCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccchH
Confidence 0000 0000 0011112222222 1367779999999753 3344443222222335555554 444444322
Q ss_pred -ccCCCeEeCCCCCHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhCCChHHHHHH
Q 001457 303 -MESTNYVQVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLPNAIVII 357 (1074)
Q Consensus 303 -~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 357 (1074)
......|++++++.++....+.+.+... ......+....|++.++|.+-.+..+
T Consensus 166 I~SRC~~~~f~~Ls~~ei~~~L~~il~~e-~i~~e~~aL~~Ia~~s~Gs~R~Al~l 220 (647)
T PRK07994 166 ILSRCLQFHLKALDVEQIRQQLEHILQAE-QIPFEPRALQLLARAADGSMRDALSL 220 (647)
T ss_pred HHhhheEeeCCCCCHHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 2234689999999999998888765311 12223466778999999988544433
No 96
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.94 E-value=0.00016 Score=85.19 Aligned_cols=193 Identities=14% Similarity=0.101 Sum_probs=104.6
Q ss_pred CCcccCcchHHHHHHHHHHHhcCCCceeEEEEEcCCCCcHHHHHHHHHhh--c-CCC--CeEEEEEecCCcCHHHHHHHH
Q 001457 157 PEFVPLKSALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ--E-IPF--DKVIFVRVTQTPDVKRVQDEI 231 (1074)
Q Consensus 157 ~~~~~~~~r~~~~~~l~~~l~~~~~~~~vi~I~G~gG~GKTtLa~~v~~~--~-~~F--~~~~wv~vs~~~~~~~~~~~i 231 (1074)
..|..+.|.+..+..+.+++..+. -...+.++|..|+||||+|+.+.+. . ... ..... ..++.-...+.|
T Consensus 13 ~~f~dviGQe~vv~~L~~~l~~~r-l~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~----~pCg~C~~C~~i 87 (618)
T PRK14951 13 RSFSEMVGQEHVVQALTNALTQQR-LHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITA----TPCGVCQACRDI 87 (618)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCC----CCCCccHHHHHH
Confidence 445556677777777778777665 2356789999999999999998766 1 110 00000 011111111112
Q ss_pred HHHhccC---CCc--chHHHHHHHHHHHHH----ccCeEEEEEcCcccc--ccccccccCCCCCCCCeEEEEec-CChhH
Q 001457 232 ARFLNTE---LEG--DVEVLRAAFLSERLK----RQKRVLIILDDLWGK--LDLAVVGIPYGEEHKGCKIILTS-RFKEV 299 (1074)
Q Consensus 232 ~~~l~~~---~~~--~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~~~~~~~~~~~gs~iivTT-R~~~v 299 (1074)
...-..+ .+. ....+.+..+.+... .++.-++|+|+|+.- ..++.+...+.......++|++| ....+
T Consensus 88 ~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~ki 167 (618)
T PRK14951 88 DSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKV 167 (618)
T ss_pred HcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhh
Confidence 1100000 000 000111122222211 245668999999853 34444444443333456666554 44444
Q ss_pred Hhh-ccCCCeEeCCCCCHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhCCChHHHH
Q 001457 300 CDE-MESTNYVQVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLPNAIV 355 (1074)
Q Consensus 300 ~~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~i~~~c~glPLai~ 355 (1074)
... ......+++++++.++..+.+.+.+.... ..-..+....|++.++|-+--+.
T Consensus 168 l~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~eg-i~ie~~AL~~La~~s~GslR~al 223 (618)
T PRK14951 168 PVTVLSRCLQFNLRPMAPETVLEHLTQVLAAEN-VPAEPQALRLLARAARGSMRDAL 223 (618)
T ss_pred hHHHHHhceeeecCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHHH
Confidence 322 23346899999999999888887764211 22234667889999999774443
No 97
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.93 E-value=2.3e-05 Score=86.26 Aligned_cols=58 Identities=17% Similarity=0.328 Sum_probs=30.6
Q ss_pred CCCccEEEEeccccccccccCccccc-ccceeEEEeeecccceeecccccccccccCCCcceeecCCccCcce
Q 001457 770 FTGLMCMHLRACSMQRIFHSNFYPTV-QILEELHVEYCYSLKEVFCLEDIEGEQAGLKRLRELVLVGLPKVLT 841 (1074)
Q Consensus 770 l~~L~~L~L~~~~~~~~~~~~~~~~l-~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~ 841 (1074)
+++++.|++++|.+... | .+ ++|+.|.+++|..++.++.. + .++|+.|.+.+|.++..
T Consensus 51 ~~~l~~L~Is~c~L~sL-P-----~LP~sLtsL~Lsnc~nLtsLP~~--L------P~nLe~L~Ls~Cs~L~s 109 (426)
T PRK15386 51 ARASGRLYIKDCDIESL-P-----VLPNELTEITIENCNNLTTLPGS--I------PEGLEKLTVCHCPEISG 109 (426)
T ss_pred hcCCCEEEeCCCCCccc-C-----CCCCCCcEEEccCCCCcccCCch--h------hhhhhheEccCcccccc
Confidence 56777777777744332 2 12 24666666666555443321 0 24566666666555443
No 98
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.92 E-value=0.00018 Score=82.30 Aligned_cols=179 Identities=13% Similarity=0.112 Sum_probs=105.1
Q ss_pred CCCcccCcchHHHHHHHHHHHhcCCCceeEEEEEcCCCCcHHHHHHHHHhh-c---------------------CCCCeE
Q 001457 156 TPEFVPLKSALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ-E---------------------IPFDKV 213 (1074)
Q Consensus 156 ~~~~~~~~~r~~~~~~l~~~l~~~~~~~~vi~I~G~gG~GKTtLa~~v~~~-~---------------------~~F~~~ 213 (1074)
+..|..+.|.+..++.+.+.+..+. -.+.+.++|+.|+||||+|+.+... . ..+..+
T Consensus 9 P~~f~dliGQe~vv~~L~~a~~~~r-i~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv 87 (491)
T PRK14964 9 PSSFKDLVGQDVLVRILRNAFTLNK-IPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDV 87 (491)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCE
Confidence 3455556677777777767766554 1347889999999999999988764 1 111223
Q ss_pred EEEEecCCcCHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHccCeEEEEEcCcccc--ccccccccCCCCCCCCeEEE
Q 001457 214 IFVRVTQTPDVKRVQDEIARFLNTELEGDVEVLRAAFLSERLKRQKRVLIILDDLWGK--LDLAVVGIPYGEEHKGCKII 291 (1074)
Q Consensus 214 ~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~--~~~~~~~~~~~~~~~gs~ii 291 (1074)
+.++.+....+.++ ++|++..... -. .+++-++|+|++..- ...+.+...+....+.+++|
T Consensus 88 ~eidaas~~~vddI-R~Iie~~~~~---------------P~-~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fI 150 (491)
T PRK14964 88 IEIDAASNTSVDDI-KVILENSCYL---------------PI-SSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFI 150 (491)
T ss_pred EEEecccCCCHHHH-HHHHHHHHhc---------------cc-cCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEE
Confidence 34444333332221 1222211100 01 256678999998743 33444433333333456666
Q ss_pred Eec-CChhHHhhc-cCCCeEeCCCCCHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhCCChHH
Q 001457 292 LTS-RFKEVCDEM-ESTNYVQVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLPNA 353 (1074)
Q Consensus 292 vTT-R~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~i~~~c~glPLa 353 (1074)
++| ..+.+...+ .....+++++++.++-.+.+.+.+.... ..-..+....|++.++|-+-.
T Consensus 151 latte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Eg-i~i~~eAL~lIa~~s~GslR~ 213 (491)
T PRK14964 151 LATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKEN-IEHDEESLKLIAENSSGSMRN 213 (491)
T ss_pred EEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHH
Confidence 555 444554332 2336889999999999988888775221 222346677899999987743
No 99
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.91 E-value=0.00013 Score=85.00 Aligned_cols=181 Identities=12% Similarity=0.096 Sum_probs=103.4
Q ss_pred CCCCcccCcchHHHHHHHHHHHhcCCCceeEEEEEcCCCCcHHHHHHHHHhh---cCCC-------------------Ce
Q 001457 155 PTPEFVPLKSALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ---EIPF-------------------DK 212 (1074)
Q Consensus 155 ~~~~~~~~~~r~~~~~~l~~~l~~~~~~~~vi~I~G~gG~GKTtLa~~v~~~---~~~F-------------------~~ 212 (1074)
.+..|..+.|.+..++.+..++..+. -...+.++|+.|+||||+|+.+.+. ...+ .-
T Consensus 11 RP~~f~divGq~~v~~~L~~~~~~~~-l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d 89 (509)
T PRK14958 11 RPRCFQEVIGQAPVVRALSNALDQQY-LHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPD 89 (509)
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHhCC-CCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCce
Confidence 34455667788888888888887665 1345789999999999999998887 1111 11
Q ss_pred EEEEEecCCcCHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHccCeEEEEEcCcccc--ccccccccCCCCCCCCeEE
Q 001457 213 VIFVRVTQTPDVKRVQDEIARFLNTELEGDVEVLRAAFLSERLKRQKRVLIILDDLWGK--LDLAVVGIPYGEEHKGCKI 290 (1074)
Q Consensus 213 ~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~--~~~~~~~~~~~~~~~gs~i 290 (1074)
++.++.+....+..+ +++++.+. ..-..++.-++|+|+|..- ...+.+...+......+++
T Consensus 90 ~~eidaas~~~v~~i-R~l~~~~~----------------~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~f 152 (509)
T PRK14958 90 LFEVDAASRTKVEDT-RELLDNIP----------------YAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKF 152 (509)
T ss_pred EEEEcccccCCHHHH-HHHHHHHh----------------hccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEE
Confidence 233332222222221 11222111 0001356778999999853 3344443333332345666
Q ss_pred EEecC-ChhHHhh-ccCCCeEeCCCCCHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhCCChHHH
Q 001457 291 ILTSR-FKEVCDE-MESTNYVQVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLPNAI 354 (1074)
Q Consensus 291 ivTTR-~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~i~~~c~glPLai 354 (1074)
|++|. ...+... ......+++++++.++-...+.+.+.... ..-..+....|++.++|-+--+
T Consensus 153 Ilattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~eg-i~~~~~al~~ia~~s~GslR~a 217 (509)
T PRK14958 153 ILATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEEN-VEFENAALDLLARAANGSVRDA 217 (509)
T ss_pred EEEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCcHHHH
Confidence 66553 3333322 22235788999999987776666554211 1122455677888899877443
No 100
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=97.90 E-value=0.00013 Score=85.54 Aligned_cols=181 Identities=14% Similarity=0.108 Sum_probs=102.8
Q ss_pred CCCCcccCcchHHHHHHHHHHHhcCCCceeEEEEEcCCCCcHHHHHHHHHhh---cCC-------------------CCe
Q 001457 155 PTPEFVPLKSALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ---EIP-------------------FDK 212 (1074)
Q Consensus 155 ~~~~~~~~~~r~~~~~~l~~~l~~~~~~~~vi~I~G~gG~GKTtLa~~v~~~---~~~-------------------F~~ 212 (1074)
.+..|..+.|.+..++.+..++..+. -.+.+.++|..|+||||+|+.+.+. ... |..
T Consensus 11 RP~tFddIIGQe~vv~~L~~ai~~~r-l~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~D 89 (709)
T PRK08691 11 RPKTFADLVGQEHVVKALQNALDEGR-LHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVD 89 (709)
T ss_pred CCCCHHHHcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccc
Confidence 34456667788888888888887654 1356899999999999999998876 111 111
Q ss_pred EEEEEecCCcCHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHccCeEEEEEcCccccc--cccccccCCCCCCCCeEE
Q 001457 213 VIFVRVTQTPDVKRVQDEIARFLNTELEGDVEVLRAAFLSERLKRQKRVLIILDDLWGKL--DLAVVGIPYGEEHKGCKI 290 (1074)
Q Consensus 213 ~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~~~~~~~~~~~gs~i 290 (1074)
++.++.+....+.. +++++.. ....-..+++-++|+|++.... ..+.+...+......+++
T Consensus 90 vlEidaAs~~gVd~-IRelle~----------------a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~f 152 (709)
T PRK08691 90 LLEIDAASNTGIDN-IREVLEN----------------AQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKF 152 (709)
T ss_pred eEEEeccccCCHHH-HHHHHHH----------------HHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEE
Confidence 11222111111111 1111111 0000012567789999987532 233333222222335666
Q ss_pred EEecCCh-hHHhh-ccCCCeEeCCCCCHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhCCChHHH
Q 001457 291 ILTSRFK-EVCDE-MESTNYVQVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLPNAI 354 (1074)
Q Consensus 291 ivTTR~~-~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~i~~~c~glPLai 354 (1074)
|++|.+. .+... .+....+++.+++.++....+.+.+.... ..-..+....|++.++|-+.-+
T Consensus 153 ILaTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEg-i~id~eAL~~Ia~~A~GslRdA 217 (709)
T PRK08691 153 ILATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEK-IAYEPPALQLLGRAAAGSMRDA 217 (709)
T ss_pred EEEeCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcC-CCcCHHHHHHHHHHhCCCHHHH
Confidence 6666433 33211 12225688899999999888887765211 2223467788999999988443
No 101
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.89 E-value=2.2e-05 Score=75.77 Aligned_cols=82 Identities=28% Similarity=0.415 Sum_probs=45.0
Q ss_pred CCcEEeeccCCcccCCCCCCCCCccEEEccCCCCCCCChhHHhcCCCccEEEecCCccCCCCC--CccCCccCCeeeccC
Q 001457 510 NCEKLSLMDGNVTALPDQPKCPRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSLAP--SLPCLEKLRSLHLEN 587 (1074)
Q Consensus 510 ~~~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~--~i~~l~~Lr~L~L~~ 587 (1074)
+...+++++|++..++.++.++.|.+|.+.+|.++.+.+..-..+++|.+|.|.+|++..+-+ .+..|+.|++|.+-+
T Consensus 43 ~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~ 122 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLG 122 (233)
T ss_pred ccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecC
Confidence 344555566665555555556666666666666665555544445556666666665554432 344455555555555
Q ss_pred CCCC
Q 001457 588 THLN 591 (1074)
Q Consensus 588 ~~l~ 591 (1074)
|.++
T Consensus 123 Npv~ 126 (233)
T KOG1644|consen 123 NPVE 126 (233)
T ss_pred Cchh
Confidence 5443
No 102
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=97.88 E-value=0.00038 Score=78.27 Aligned_cols=170 Identities=11% Similarity=0.049 Sum_probs=97.9
Q ss_pred cCcchHHHHHHHHHHHhcCCC--------ceeEEEEEcCCCCcHHHHHHHHHhh-cCC--------------------CC
Q 001457 161 PLKSALEVIKSVMKLLKDNSI--------SINIIGVYGSGGIGKTTLMKQVMKQ-EIP--------------------FD 211 (1074)
Q Consensus 161 ~~~~r~~~~~~l~~~l~~~~~--------~~~vi~I~G~gG~GKTtLa~~v~~~-~~~--------------------F~ 211 (1074)
.+.|.+..++.+...+..+.. -.+.+.++|+.|+||||+|+.+... -.. ..
T Consensus 6 ~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~hp 85 (394)
T PRK07940 6 DLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTHP 85 (394)
T ss_pred hccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCC
Confidence 355777777777777765421 2467889999999999999998776 111 00
Q ss_pred eEEEEEecC-CcCHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHH----ccCeEEEEEcCcccc--ccccccccCCCCC
Q 001457 212 KVIFVRVTQ-TPDVKRVQDEIARFLNTELEGDVEVLRAAFLSERLK----RQKRVLIILDDLWGK--LDLAVVGIPYGEE 284 (1074)
Q Consensus 212 ~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~~~~~~~~~ 284 (1074)
-..++.... ...+.+ +..+.+... .+++-++|+|+++.- ...+.+...+...
T Consensus 86 D~~~i~~~~~~i~i~~---------------------iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep 144 (394)
T PRK07940 86 DVRVVAPEGLSIGVDE---------------------VRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEP 144 (394)
T ss_pred CEEEeccccccCCHHH---------------------HHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcC
Confidence 111221110 111111 112222221 245668888998753 2233332222222
Q ss_pred CCCeEEEEecCC-hhHHhhc-cCCCeEeCCCCCHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhCCChHHHHHH
Q 001457 285 HKGCKIILTSRF-KEVCDEM-ESTNYVQVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLPNAIVII 357 (1074)
Q Consensus 285 ~~gs~iivTTR~-~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 357 (1074)
..+..+|++|.+ ..+...+ .....+.+.+++.++..+.+.+..+ . ..+.+..++..++|.|.....+
T Consensus 145 ~~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~----~--~~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 145 PPRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDG----V--DPETARRAARASQGHIGRARRL 213 (394)
T ss_pred CCCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcC----C--CHHHHHHHHHHcCCCHHHHHHH
Confidence 345556555554 4444332 2336899999999999988875432 1 1355788999999999655443
No 103
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.88 E-value=0.00019 Score=74.37 Aligned_cols=153 Identities=22% Similarity=0.258 Sum_probs=89.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhh--cCCC-CeEEEEEecCCcCHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHccC
Q 001457 183 INIIGVYGSGGIGKTTLMKQVMKQ--EIPF-DKVIFVRVTQTPDVKRVQDEIARFLNTELEGDVEVLRAAFLSERLKRQK 259 (1074)
Q Consensus 183 ~~vi~I~G~gG~GKTtLa~~v~~~--~~~F-~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 259 (1074)
...+.|+|..|+|||.|.+.+++. +.+- ..++|++ ..++...++..+.. .....+++.+. .
T Consensus 34 ~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~------~~~f~~~~~~~~~~--------~~~~~~~~~~~--~ 97 (219)
T PF00308_consen 34 YNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS------AEEFIREFADALRD--------GEIEEFKDRLR--S 97 (219)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE------HHHHHHHHHHHHHT--------TSHHHHHHHHC--T
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhccccccceeec------HHHHHHHHHHHHHc--------ccchhhhhhhh--c
Confidence 456889999999999999999998 3222 2456764 44555555555432 11233445553 4
Q ss_pred eEEEEEcCcccc---ccccc-cccCCC-CCCCCeEEEEecCChh---------HHhhccCCCeEeCCCCCHHHHHHHHHH
Q 001457 260 RVLIILDDLWGK---LDLAV-VGIPYG-EEHKGCKIILTSRFKE---------VCDEMESTNYVQVEELTDEDRLILFKK 325 (1074)
Q Consensus 260 ~~LlVlDdv~~~---~~~~~-~~~~~~-~~~~gs~iivTTR~~~---------v~~~~~~~~~~~l~~L~~~~~~~lf~~ 325 (1074)
-=+|++||++.. ..|.+ +..-+. ....|-+||+|++... +...+...-++++++.++++-.+++.+
T Consensus 98 ~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~ 177 (219)
T PF00308_consen 98 ADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQK 177 (219)
T ss_dssp SSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHHH
T ss_pred CCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHHH
Confidence 568899999754 22322 111111 0123668999985432 234445556899999999999999988
Q ss_pred hcCCCCCCchhHHHHHHHHHHhCCChH
Q 001457 326 KAGLPEGTKAFDRAAEEVVRQCGKLPN 352 (1074)
Q Consensus 326 ~a~~~~~~~~~~~~~~~i~~~c~glPL 352 (1074)
++.... -.--++++.-|++.+.+-.-
T Consensus 178 ~a~~~~-~~l~~~v~~~l~~~~~~~~r 203 (219)
T PF00308_consen 178 KAKERG-IELPEEVIEYLARRFRRDVR 203 (219)
T ss_dssp HHHHTT---S-HHHHHHHHHHTTSSHH
T ss_pred HHHHhC-CCCcHHHHHHHHHhhcCCHH
Confidence 885211 12335666777777665443
No 104
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.87 E-value=0.00026 Score=81.47 Aligned_cols=162 Identities=14% Similarity=0.123 Sum_probs=100.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhh-c-CC-CCeEEEEEecCCcCHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHccC
Q 001457 183 INIIGVYGSGGIGKTTLMKQVMKQ-E-IP-FDKVIFVRVTQTPDVKRVQDEIARFLNTELEGDVEVLRAAFLSERLKRQK 259 (1074)
Q Consensus 183 ~~vi~I~G~gG~GKTtLa~~v~~~-~-~~-F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 259 (1074)
..-+.|+|..|+|||+|++.+.+. . .+ -..+++++ ..++...+...++.. ......+++.+. .
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~------~~~f~~~~~~~l~~~------~~~~~~~~~~~~--~ 206 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMS------GDEFARKAVDILQKT------HKEIEQFKNEIC--Q 206 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE------HHHHHHHHHHHHHHh------hhHHHHHHHHhc--c
Confidence 356889999999999999999997 2 22 23445554 345666666655421 012233444442 4
Q ss_pred eEEEEEcCccccc---cc-cccccCCCC-CCCCeEEEEecCCh---------hHHhhccCCCeEeCCCCCHHHHHHHHHH
Q 001457 260 RVLIILDDLWGKL---DL-AVVGIPYGE-EHKGCKIILTSRFK---------EVCDEMESTNYVQVEELTDEDRLILFKK 325 (1074)
Q Consensus 260 ~~LlVlDdv~~~~---~~-~~~~~~~~~-~~~gs~iivTTR~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf~~ 325 (1074)
.-+||+||+.... .+ +.+..-+.. ...|..||+|+... .+...+...-++.+++++.++-.+++.+
T Consensus 207 ~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~ 286 (450)
T PRK14087 207 NDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKK 286 (450)
T ss_pred CCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHH
Confidence 5589999996431 22 222221211 12345788886532 2233344445788999999999999998
Q ss_pred hcCCCCC-CchhHHHHHHHHHHhCCChHHHHHHH
Q 001457 326 KAGLPEG-TKAFDRAAEEVVRQCGKLPNAIVIIG 358 (1074)
Q Consensus 326 ~a~~~~~-~~~~~~~~~~i~~~c~glPLai~~~~ 358 (1074)
++..... ..--+++..-|++.++|.|-.+..+.
T Consensus 287 ~~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL 320 (450)
T PRK14087 287 EIKNQNIKQEVTEEAINFISNYYSDDVRKIKGSV 320 (450)
T ss_pred HHHhcCCCCCCCHHHHHHHHHccCCCHHHHHHHH
Confidence 8852211 12346888999999999986655544
No 105
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=97.86 E-value=0.00038 Score=78.91 Aligned_cols=182 Identities=15% Similarity=0.129 Sum_probs=104.9
Q ss_pred CCcccCcchHHHHHHHHHHHhcCCCceeEEEEEcCCCCcHHHHHHHHHhh--cC---------------------CCCeE
Q 001457 157 PEFVPLKSALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ--EI---------------------PFDKV 213 (1074)
Q Consensus 157 ~~~~~~~~r~~~~~~l~~~l~~~~~~~~vi~I~G~gG~GKTtLa~~v~~~--~~---------------------~F~~~ 213 (1074)
..+..+.|.++.++.+.+++..+. -.+.+.++|++|+||||+|+.+... .. +++.
T Consensus 11 ~~~~~iig~~~~~~~l~~~~~~~~-~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~- 88 (355)
T TIGR02397 11 QTFEDVIGQEHIVQTLKNAIKNGR-IAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDV- 88 (355)
T ss_pred CcHhhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCE-
Confidence 344456678888888888886654 2357789999999999999998877 11 1221
Q ss_pred EEEEecCCcCHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHccCeEEEEEcCcccc--ccccccccCCCCCCCCeEEE
Q 001457 214 IFVRVTQTPDVKRVQDEIARFLNTELEGDVEVLRAAFLSERLKRQKRVLIILDDLWGK--LDLAVVGIPYGEEHKGCKII 291 (1074)
Q Consensus 214 ~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~--~~~~~~~~~~~~~~~gs~ii 291 (1074)
++++-+....... .+++...+... -. .+++-++|+|++..- ...+.+...+......+.+|
T Consensus 89 ~~~~~~~~~~~~~-~~~l~~~~~~~---------------p~-~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lI 151 (355)
T TIGR02397 89 IEIDAASNNGVDD-IREILDNVKYA---------------PS-SGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFI 151 (355)
T ss_pred EEeeccccCCHHH-HHHHHHHHhcC---------------cc-cCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEE
Confidence 2222211111111 11222111100 01 245568899998643 33444433333333466766
Q ss_pred EecCChh-HHhhc-cCCCeEeCCCCCHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhCCChHHHHHHH
Q 001457 292 LTSRFKE-VCDEM-ESTNYVQVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLPNAIVIIG 358 (1074)
Q Consensus 292 vTTR~~~-v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~i~~~c~glPLai~~~~ 358 (1074)
++|.+.. +.... .....+++.++++++..+.+...+.... ..--++.+..|++.++|-|..+....
T Consensus 152 l~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g-~~i~~~a~~~l~~~~~g~~~~a~~~l 219 (355)
T TIGR02397 152 LATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEG-IKIEDEALELIARAADGSLRDALSLL 219 (355)
T ss_pred EEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCChHHHHHHH
Confidence 6665443 32222 2235788999999998888887664211 11224678889999999886554443
No 106
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=97.85 E-value=3.7e-05 Score=85.54 Aligned_cols=189 Identities=12% Similarity=0.036 Sum_probs=104.6
Q ss_pred ccCcchHHHHHHHHHHHhcCCCceeEEEEEcCCCCcHHHHHHHHHhh--cCC-CCeEE------EEEecCCcCHHHHHHH
Q 001457 160 VPLKSALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ--EIP-FDKVI------FVRVTQTPDVKRVQDE 230 (1074)
Q Consensus 160 ~~~~~r~~~~~~l~~~l~~~~~~~~vi~I~G~gG~GKTtLa~~v~~~--~~~-F~~~~------wv~vs~~~~~~~~~~~ 230 (1074)
..+.|.++.++.+.+.+..+. -...+.++|+.|+||+|+|..+... ... ..... =..+.... ...+.
T Consensus 19 ~~iiGq~~~~~~L~~~~~~~r-l~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c---~~c~~ 94 (365)
T PRK07471 19 TALFGHAAAEAALLDAYRSGR-LHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDH---PVARR 94 (365)
T ss_pred hhccChHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCC---hHHHH
Confidence 345677787888888877665 1346889999999999999988877 211 11000 00000111 11122
Q ss_pred HHHHhccC-------CCc-------chHHHHHHHHHHHHH----ccCeEEEEEcCcccc--ccccccccCCCCCCCCeEE
Q 001457 231 IARFLNTE-------LEG-------DVEVLRAAFLSERLK----RQKRVLIILDDLWGK--LDLAVVGIPYGEEHKGCKI 290 (1074)
Q Consensus 231 i~~~l~~~-------~~~-------~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~~~~~~~~~~~gs~i 290 (1074)
|...-..+ .++ ....+.+..+.+++. .+++-++|+||++.- .....+...+.....++.+
T Consensus 95 i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~~~~ 174 (365)
T PRK07471 95 IAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPARSLF 174 (365)
T ss_pred HHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCCeEE
Confidence 21111000 000 011222333444332 367779999998753 3333333222222345667
Q ss_pred EEecCChh-HHhhc-cCCCeEeCCCCCHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhCCChHHHHHH
Q 001457 291 ILTSRFKE-VCDEM-ESTNYVQVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLPNAIVII 357 (1074)
Q Consensus 291 ivTTR~~~-v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 357 (1074)
|++|.+.+ +.... .....+.+.+++.++..+++.+..... + .+....++..++|.|..+..+
T Consensus 175 IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~~---~--~~~~~~l~~~s~Gsp~~Al~l 238 (365)
T PRK07471 175 LLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPDL---P--DDPRAALAALAEGSVGRALRL 238 (365)
T ss_pred EEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhcccC---C--HHHHHHHHHHcCCCHHHHHHH
Confidence 77666554 33222 233689999999999999998764311 1 122267899999999865544
No 107
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=97.84 E-value=0.00016 Score=75.91 Aligned_cols=148 Identities=12% Similarity=0.157 Sum_probs=86.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhh--cCCCCeEEEEEecCCcCHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHccCe
Q 001457 183 INIIGVYGSGGIGKTTLMKQVMKQ--EIPFDKVIFVRVTQTPDVKRVQDEIARFLNTELEGDVEVLRAAFLSERLKRQKR 260 (1074)
Q Consensus 183 ~~vi~I~G~gG~GKTtLa~~v~~~--~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~ 260 (1074)
.+.+.|+|..|+|||+||+.+++. ... ...++++..... .. + ... ...
T Consensus 42 ~~~~~l~G~~G~GKT~La~ai~~~~~~~~-~~~~~i~~~~~~------~~----~-----------------~~~--~~~ 91 (227)
T PRK08903 42 DRFFYLWGEAGSGRSHLLQALVADASYGG-RNARYLDAASPL------LA----F-----------------DFD--PEA 91 (227)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCC-CcEEEEehHHhH------HH----H-----------------hhc--ccC
Confidence 567889999999999999999988 332 234555533211 00 0 111 233
Q ss_pred EEEEEcCcccccccc--ccccCCCC-CCCCe-EEEEecCChhHHh--------hccCCCeEeCCCCCHHHHHHHHHHhcC
Q 001457 261 VLIILDDLWGKLDLA--VVGIPYGE-EHKGC-KIILTSRFKEVCD--------EMESTNYVQVEELTDEDRLILFKKKAG 328 (1074)
Q Consensus 261 ~LlVlDdv~~~~~~~--~~~~~~~~-~~~gs-~iivTTR~~~v~~--------~~~~~~~~~l~~L~~~~~~~lf~~~a~ 328 (1074)
-+||+||+.....+. .+...+.. ...|. .||+|++...... .+.....+++.++++++-..++.+.+.
T Consensus 92 ~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~ 171 (227)
T PRK08903 92 ELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDADKIAALKAAAA 171 (227)
T ss_pred CEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHHHH
Confidence 478899997542221 22112211 11233 4677766443221 222336889999999887777766443
Q ss_pred CCCCCchhHHHHHHHHHHhCCChHHHHHHHHHH
Q 001457 329 LPEGTKAFDRAAEEVVRQCGKLPNAIVIIGTAL 361 (1074)
Q Consensus 329 ~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~l 361 (1074)
.. ...--++....+++.+.|.+..+..+-..+
T Consensus 172 ~~-~v~l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 172 ER-GLQLADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred Hc-CCCCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 11 122335677888888888887776665554
No 108
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.83 E-value=5.6e-05 Score=76.74 Aligned_cols=45 Identities=27% Similarity=0.359 Sum_probs=31.4
Q ss_pred CcchHHHHHHHHHHHhc-CCCceeEEEEEcCCCCcHHHHHHHHHhh
Q 001457 162 LKSALEVIKSVMKLLKD-NSISINIIGVYGSGGIGKTTLMKQVMKQ 206 (1074)
Q Consensus 162 ~~~r~~~~~~l~~~l~~-~~~~~~vi~I~G~gG~GKTtLa~~v~~~ 206 (1074)
+.||+++++++...+.. .....+++.|+|.+|+|||+|++.++..
T Consensus 2 fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~ 47 (185)
T PF13191_consen 2 FVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDR 47 (185)
T ss_dssp -TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 56899999999998842 2234689999999999999999999988
No 109
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.83 E-value=2e-06 Score=99.06 Aligned_cols=105 Identities=30% Similarity=0.406 Sum_probs=51.4
Q ss_pred CCCCCccEEEccCCCCCCCChhHHhcCCCccEEEecCCccCCCCCCccCCccCCeeeccCCCCCCCccccCCCCccEEEe
Q 001457 528 PKCPRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSLAPSLPCLEKLRSLHLENTHLNDASLIREFGELEVLIL 607 (1074)
Q Consensus 528 ~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~Lr~L~L~~~~l~~~~~i~~l~~L~~L~L 607 (1074)
..+.+|..|++.+|.+..+... +..+++|++|++++|.|+++. .+..+..|+.|++.+|.|+....+..+++|+.+++
T Consensus 92 ~~~~~l~~l~l~~n~i~~i~~~-l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N~i~~~~~~~~l~~L~~l~l 169 (414)
T KOG0531|consen 92 SKLKSLEALDLYDNKIEKIENL-LSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSGNLISDISGLESLKSLKLLDL 169 (414)
T ss_pred ccccceeeeeccccchhhcccc-hhhhhcchheecccccccccc-chhhccchhhheeccCcchhccCCccchhhhcccC
Confidence 3445555555555554444331 234555555555555555442 33444445555555555555444444555555555
Q ss_pred eCCCCcccCcc-ccCCCCCCEEeCCCCc
Q 001457 608 KGSRIVELPNG-IGTVSNLKLLDLSNNL 634 (1074)
Q Consensus 608 ~~~~i~~lp~~-i~~L~~L~~L~l~~~~ 634 (1074)
++|.+..++.. ...+.+|+.+++.+|.
T Consensus 170 ~~n~i~~ie~~~~~~~~~l~~l~l~~n~ 197 (414)
T KOG0531|consen 170 SYNRIVDIENDELSELISLEELDLGGNS 197 (414)
T ss_pred CcchhhhhhhhhhhhccchHHHhccCCc
Confidence 55555544332 3445555555555544
No 110
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.83 E-value=0.00017 Score=82.24 Aligned_cols=196 Identities=12% Similarity=0.109 Sum_probs=105.1
Q ss_pred CCcccCcchHHHHHHHHHHHhcCCCceeEEEEEcCCCCcHHHHHHHHHhh--c-CCCCeEEEEE-ecCCcCHHHHHHHHH
Q 001457 157 PEFVPLKSALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ--E-IPFDKVIFVR-VTQTPDVKRVQDEIA 232 (1074)
Q Consensus 157 ~~~~~~~~r~~~~~~l~~~l~~~~~~~~vi~I~G~gG~GKTtLa~~v~~~--~-~~F~~~~wv~-vs~~~~~~~~~~~i~ 232 (1074)
..+..+.|.+..++.+..++..+. -...+.++|+.|+||||+|+.+.+. . ...+...|.. +...+..-...+.+.
T Consensus 13 ~~~~eiiGq~~~~~~L~~~~~~~~-~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~~ 91 (397)
T PRK14955 13 KKFADITAQEHITRTIQNSLRMGR-VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDFD 91 (397)
T ss_pred CcHhhccChHHHHHHHHHHHHhCC-cceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHHh
Confidence 334446677777777777777655 1345889999999999999999887 2 2111111110 001111111111111
Q ss_pred HHhccC---CCc--chHHHHHHHHHHHHH----ccCeEEEEEcCcccc--ccccccccCCCCCCCCeEEEEec-CChhHH
Q 001457 233 RFLNTE---LEG--DVEVLRAAFLSERLK----RQKRVLIILDDLWGK--LDLAVVGIPYGEEHKGCKIILTS-RFKEVC 300 (1074)
Q Consensus 233 ~~l~~~---~~~--~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~~~~~~~~~~~gs~iivTT-R~~~v~ 300 (1074)
..-..+ .+. ....+.+..+.+.+. .+++-++|+|++..- ..++.+...+......+.+|++| +...+.
T Consensus 92 ~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl~ 171 (397)
T PRK14955 92 AGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIP 171 (397)
T ss_pred cCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHhH
Confidence 110000 000 000111222223231 256678999998753 34555544444334466666555 444443
Q ss_pred hhcc-CCCeEeCCCCCHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhCCChHHH
Q 001457 301 DEME-STNYVQVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLPNAI 354 (1074)
Q Consensus 301 ~~~~-~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~i~~~c~glPLai 354 (1074)
.... ....++++++++++..+.+...+... ...-..+.+..|++.++|-+--+
T Consensus 172 ~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~-g~~i~~~al~~l~~~s~g~lr~a 225 (397)
T PRK14955 172 ATIASRCQRFNFKRIPLEEIQQQLQGICEAE-GISVDADALQLIGRKAQGSMRDA 225 (397)
T ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHcCCCHHHH
Confidence 3221 22578999999999888887766411 12233567889999999977433
No 111
>PRK05642 DNA replication initiation factor; Validated
Probab=97.82 E-value=0.00021 Score=74.92 Aligned_cols=149 Identities=19% Similarity=0.278 Sum_probs=90.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhh-cCCCCeEEEEEecCCcCHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHccCeE
Q 001457 183 INIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKRVQDEIARFLNTELEGDVEVLRAAFLSERLKRQKRV 261 (1074)
Q Consensus 183 ~~vi~I~G~gG~GKTtLa~~v~~~-~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~ 261 (1074)
...+.|+|..|+|||.|++.+++. ...-..++|++..+ +... ...+.+.+. +- =
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~------~~~~-----------------~~~~~~~~~-~~-d 99 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAE------LLDR-----------------GPELLDNLE-QY-E 99 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHH------HHhh-----------------hHHHHHhhh-hC-C
Confidence 367899999999999999999887 32234567776432 1111 012333343 12 2
Q ss_pred EEEEcCcccc---ccccc-cccCCCC-CCCCeEEEEecCChhH---------HhhccCCCeEeCCCCCHHHHHHHHHHhc
Q 001457 262 LIILDDLWGK---LDLAV-VGIPYGE-EHKGCKIILTSRFKEV---------CDEMESTNYVQVEELTDEDRLILFKKKA 327 (1074)
Q Consensus 262 LlVlDdv~~~---~~~~~-~~~~~~~-~~~gs~iivTTR~~~v---------~~~~~~~~~~~l~~L~~~~~~~lf~~~a 327 (1074)
++|+||+... ..|+. +..-+.. ...|.+||+|++...- ...+....+++++++++++-.++.++++
T Consensus 100 ~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka 179 (234)
T PRK05642 100 LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRA 179 (234)
T ss_pred EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHHH
Confidence 6889999632 34433 2222211 1236678888874332 2223334678999999999999998666
Q ss_pred CCCCCCchhHHHHHHHHHHhCCChHHHHHH
Q 001457 328 GLPEGTKAFDRAAEEVVRQCGKLPNAIVII 357 (1074)
Q Consensus 328 ~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 357 (1074)
... .-.--+++..-|++++.|-.-++..+
T Consensus 180 ~~~-~~~l~~ev~~~L~~~~~~d~r~l~~~ 208 (234)
T PRK05642 180 SRR-GLHLTDEVGHFILTRGTRSMSALFDL 208 (234)
T ss_pred HHc-CCCCCHHHHHHHHHhcCCCHHHHHHH
Confidence 522 11222577888888888765444333
No 112
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=97.82 E-value=0.00032 Score=81.65 Aligned_cols=196 Identities=15% Similarity=0.135 Sum_probs=104.6
Q ss_pred CCCcccCcchHHHHHHHHHHHhcCCCceeEEEEEcCCCCcHHHHHHHHHhh--cCCCCeEEEEEecCCcCHHHHHHHHHH
Q 001457 156 TPEFVPLKSALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ--EIPFDKVIFVRVTQTPDVKRVQDEIAR 233 (1074)
Q Consensus 156 ~~~~~~~~~r~~~~~~l~~~l~~~~~~~~vi~I~G~gG~GKTtLa~~v~~~--~~~F~~~~wv~vs~~~~~~~~~~~i~~ 233 (1074)
+..+..+.|++..++.+..++..+. -.+.+.++|+.|+||||+|+.+.+. ..+ |.... .++.-...+.+..
T Consensus 12 P~~F~dIIGQe~iv~~L~~aI~~~r-l~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~-----~~~~~-~Cg~C~sCr~i~~ 84 (605)
T PRK05896 12 PHNFKQIIGQELIKKILVNAILNNK-LTHAYIFSGPRGIGKTSIAKIFAKAINCLN-----PKDGD-CCNSCSVCESINT 84 (605)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHhcCCC-----CCCCC-CCcccHHHHHHHc
Confidence 4445567788888888888876654 1357889999999999999999877 111 11100 1111111111111
Q ss_pred HhccCC---Ccc--hHHHHHHHHHHHHH----ccCeEEEEEcCcccc--ccccccccCCCCCCCCeEEEEec-CChhHHh
Q 001457 234 FLNTEL---EGD--VEVLRAAFLSERLK----RQKRVLIILDDLWGK--LDLAVVGIPYGEEHKGCKIILTS-RFKEVCD 301 (1074)
Q Consensus 234 ~l~~~~---~~~--~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~~~~~~~~~~~gs~iivTT-R~~~v~~ 301 (1074)
....+. +.. ...+....+.+... .+++-++|+|+++.- ..+..+...+........+|++| ....+..
T Consensus 85 ~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~ 164 (605)
T PRK05896 85 NQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPL 164 (605)
T ss_pred CCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhH
Confidence 100000 000 00111111111111 134457999998753 34444433332223355555544 4444432
Q ss_pred h-ccCCCeEeCCCCCHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhCCCh-HHHHHHHH
Q 001457 302 E-MESTNYVQVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLP-NAIVIIGT 359 (1074)
Q Consensus 302 ~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~i~~~c~glP-Lai~~~~~ 359 (1074)
. ......+++.++++++....+.+.+.... ..-..+.+..|++.++|-+ .|+..+-.
T Consensus 165 TI~SRcq~ieF~~Ls~~eL~~~L~~il~keg-i~Is~eal~~La~lS~GdlR~AlnlLek 223 (605)
T PRK05896 165 TIISRCQRYNFKKLNNSELQELLKSIAKKEK-IKIEDNAIDKIADLADGSLRDGLSILDQ 223 (605)
T ss_pred HHHhhhhhcccCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 2 22336889999999999888887664211 1122456788999999966 34444443
No 113
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.82 E-value=3.1e-07 Score=103.63 Aligned_cols=171 Identities=21% Similarity=0.263 Sum_probs=109.4
Q ss_pred cCCCcEEeeccCCcccCCCCCCC-CCccEEEccCCC----------CCCCChhHHhcCCCccEEEecCCccCCCCCCccC
Q 001457 508 LQNCEKLSLMDGNVTALPDQPKC-PRLTTLFLQNNP----------FADIPNAFFEHTREIKNLDLSSTNISSLAPSLPC 576 (1074)
Q Consensus 508 ~~~~~~L~l~~~~~~~l~~~~~~-~~Lr~L~l~~~~----------~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~ 576 (1074)
++.+|+|.+.++++........+ ..|++|...+.- ...+.... ....|.+.+.+.|.+..+-.++.-
T Consensus 108 F~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~--~Wn~L~~a~fsyN~L~~mD~SLql 185 (1096)
T KOG1859|consen 108 FRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSP--VWNKLATASFSYNRLVLMDESLQL 185 (1096)
T ss_pred ccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccch--hhhhHhhhhcchhhHHhHHHHHHH
Confidence 68888898888877553322111 233343332210 01111100 123567777788877777777788
Q ss_pred CccCCeeeccCCCCCCCccccCCCCccEEEeeCCCCcccCcc-ccCCCCCCEEeCCCCcCCCCcChhhhcCCCCcCEEEc
Q 001457 577 LEKLRSLHLENTHLNDASLIREFGELEVLILKGSRIVELPNG-IGTVSNLKLLDLSNNLFLQVIPPNVISKLSQLEELYV 655 (1074)
Q Consensus 577 l~~Lr~L~L~~~~l~~~~~i~~l~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~l~~~~~~~~~p~~~i~~L~~L~~L~l 655 (1074)
++.|+.|+|++|+++....+..|++|++|||++|.++.+|.- ...+ +|+.|.+++|.. ..+ .+ +.+|.+|+.|++
T Consensus 186 l~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrnN~l-~tL-~g-ie~LksL~~LDl 261 (1096)
T KOG1859|consen 186 LPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRNNAL-TTL-RG-IENLKSLYGLDL 261 (1096)
T ss_pred HHHhhhhccchhhhhhhHHHHhcccccccccccchhccccccchhhh-hheeeeecccHH-Hhh-hh-HHhhhhhhccch
Confidence 888888888888888866888888888888888888877753 2233 488888888864 333 23 788888888888
Q ss_pred cCCcCCccccccccCCCCCccccccCcCCCEEEEeecC
Q 001457 656 GNSFGDWEVEETANGQNARFSEVASLTRLTVLYIHVSN 693 (1074)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 693 (1074)
+.|.... ...+..+..|..|+.|.+.+|.
T Consensus 262 syNll~~---------hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 262 SYNLLSE---------HSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred hHhhhhc---------chhhhHHHHHHHHHHHhhcCCc
Confidence 7764311 1233445667777788887764
No 114
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.75 E-value=7.5e-06 Score=98.18 Aligned_cols=144 Identities=20% Similarity=0.307 Sum_probs=90.6
Q ss_pred CCCcEEeeccCCc--ccCCC--CCCCCCccEEEccCCCCCCC-ChhHHhcCCCccEEEecCCccCCCCCCccCCccCCee
Q 001457 509 QNCEKLSLMDGNV--TALPD--QPKCPRLTTLFLQNNPFADI-PNAFFEHTREIKNLDLSSTNISSLAPSLPCLEKLRSL 583 (1074)
Q Consensus 509 ~~~~~L~l~~~~~--~~l~~--~~~~~~Lr~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~Lr~L 583 (1074)
+++++|++++... ...+. ..-+|.|++|.+.+-.+..- ....+.++++|+.||+|+++++.+ ..++.|++|+.|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence 5667777765432 11111 14578888888887654321 233456788888888888888877 677888888888
Q ss_pred eccCCCCCC---CccccCCCCccEEEeeCCCCcccCc-------cccCCCCCCEEeCCCCcCCCCcChhhhcCCCCcCEE
Q 001457 584 HLENTHLND---ASLIREFGELEVLILKGSRIVELPN-------GIGTVSNLKLLDLSNNLFLQVIPPNVISKLSQLEEL 653 (1074)
Q Consensus 584 ~L~~~~l~~---~~~i~~l~~L~~L~L~~~~i~~lp~-------~i~~L~~L~~L~l~~~~~~~~~p~~~i~~L~~L~~L 653 (1074)
.+++=.+.. ...+.+|++|++||+|......-+. .-..|++||.||.+++.+...+-...+..-++|+.+
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i 280 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQI 280 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhh
Confidence 888777665 5567788888888888765433331 112477888888777765444333333333444433
No 115
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.75 E-value=0.0023 Score=75.17 Aligned_cols=196 Identities=13% Similarity=0.138 Sum_probs=105.3
Q ss_pred CCcccCcchHHHHHHHHHHHhcCCCceeEEEEEcCCCCcHHHHHHHHHhh--c-CCCCeEEEEEecCCcCHHHHHHHHHH
Q 001457 157 PEFVPLKSALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ--E-IPFDKVIFVRVTQTPDVKRVQDEIAR 233 (1074)
Q Consensus 157 ~~~~~~~~r~~~~~~l~~~l~~~~~~~~vi~I~G~gG~GKTtLa~~v~~~--~-~~F~~~~wv~vs~~~~~~~~~~~i~~ 233 (1074)
..+..+.|.+..++.+...+..+. -...+.++|+.|+||||+|+.+.+. . ...+. ..++.-...+.|..
T Consensus 13 ~sf~dIiGQe~v~~~L~~ai~~~r-i~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~-------~pCg~C~sC~~i~~ 84 (624)
T PRK14959 13 QTFAEVAGQETVKAILSRAAQENR-VAPAYLFSGTRGVGKTTIARIFAKALNCETAPTG-------EPCNTCEQCRKVTQ 84 (624)
T ss_pred CCHHHhcCCHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHhccccCCCCC-------CCCcccHHHHHHhc
Confidence 334445566666666666665543 2467889999999999999999887 2 11110 00111111111111
Q ss_pred HhccCC---Cc--chHHHHHHHHHHHH----HccCeEEEEEcCcccc--ccccccccCCCCCCCCeEEEEecCC-hhHHh
Q 001457 234 FLNTEL---EG--DVEVLRAAFLSERL----KRQKRVLIILDDLWGK--LDLAVVGIPYGEEHKGCKIILTSRF-KEVCD 301 (1074)
Q Consensus 234 ~l~~~~---~~--~~~~~~~~~l~~~l----~~~k~~LlVlDdv~~~--~~~~~~~~~~~~~~~gs~iivTTR~-~~v~~ 301 (1074)
....+. +. ....+.+..+.+.+ ..+++-+||+|++..- ..++.+...+........+|++|.. ..+..
T Consensus 85 g~hpDv~eId~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll~ 164 (624)
T PRK14959 85 GMHVDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPV 164 (624)
T ss_pred CCCCceEEEecccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhhH
Confidence 100000 00 00011111122221 1356779999998754 3344444333322234556665544 44432
Q ss_pred hc-cCCCeEeCCCCCHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhCCCh-HHHHHHHHHH
Q 001457 302 EM-ESTNYVQVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLP-NAIVIIGTAL 361 (1074)
Q Consensus 302 ~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~i~~~c~glP-Lai~~~~~~l 361 (1074)
.+ .....+++++++.++....+.+.+.... ..-..+.+..|++.++|-+ .|+..+..++
T Consensus 165 TI~SRcq~i~F~pLs~~eL~~~L~~il~~eg-i~id~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 165 TIVSRCQHFTFTRLSEAGLEAHLTKVLGREG-VDYDPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred HHHhhhhccccCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 22 2235789999999999988887664211 1223567888999999955 6777766554
No 116
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.74 E-value=0.00023 Score=76.35 Aligned_cols=130 Identities=15% Similarity=0.193 Sum_probs=67.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhh--cCCC-CeEEEEEecCCcCHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHccC
Q 001457 183 INIIGVYGSGGIGKTTLMKQVMKQ--EIPF-DKVIFVRVTQTPDVKRVQDEIARFLNTELEGDVEVLRAAFLSERLKRQK 259 (1074)
Q Consensus 183 ~~vi~I~G~gG~GKTtLa~~v~~~--~~~F-~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 259 (1074)
...+.++|++|+||||+|+.+++. .... ....++.++.. ++... . .+... ..+.+.+....
T Consensus 42 ~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~----~l~~~---~-----~g~~~----~~~~~~~~~a~ 105 (261)
T TIGR02881 42 VLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA----DLVGE---Y-----IGHTA----QKTREVIKKAL 105 (261)
T ss_pred cceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH----Hhhhh---h-----ccchH----HHHHHHHHhcc
Confidence 567889999999999999999876 1111 11123333221 11111 0 01111 11222222222
Q ss_pred eEEEEEcCcccc----------ccccccccCCCCCCCCeEEEEecCChhHHh------hcc--CCCeEeCCCCCHHHHHH
Q 001457 260 RVLIILDDLWGK----------LDLAVVGIPYGEEHKGCKIILTSRFKEVCD------EME--STNYVQVEELTDEDRLI 321 (1074)
Q Consensus 260 ~~LlVlDdv~~~----------~~~~~~~~~~~~~~~gs~iivTTR~~~v~~------~~~--~~~~~~l~~L~~~~~~~ 321 (1074)
..+|++|++..- +..+.+............+|+++...+... ... ....+++++++.++-.+
T Consensus 106 ~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~ 185 (261)
T TIGR02881 106 GGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELME 185 (261)
T ss_pred CCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcchhHHHHhcChHHHhccceEEEECCCCHHHHHH
Confidence 358999999742 122223222222223345666655433211 111 12457889999999999
Q ss_pred HHHHhcC
Q 001457 322 LFKKKAG 328 (1074)
Q Consensus 322 lf~~~a~ 328 (1074)
++.+.+.
T Consensus 186 Il~~~~~ 192 (261)
T TIGR02881 186 IAERMVK 192 (261)
T ss_pred HHHHHHH
Confidence 8887764
No 117
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.72 E-value=0.00045 Score=74.67 Aligned_cols=128 Identities=16% Similarity=0.143 Sum_probs=70.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh--c-CCCCeEEEEEecCCcCHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHccCeE
Q 001457 185 IIGVYGSGGIGKTTLMKQVMKQ--E-IPFDKVIFVRVTQTPDVKRVQDEIARFLNTELEGDVEVLRAAFLSERLKRQKRV 261 (1074)
Q Consensus 185 vi~I~G~gG~GKTtLa~~v~~~--~-~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~ 261 (1074)
-+.++|.+|+||||+|+.+... . ......-|+.++. .++ ...+.. .+... +.+.+..-..-
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~----~~l----~~~~~g----~~~~~----~~~~~~~a~~g 123 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR----DDL----VGQYIG----HTAPK----TKEILKRAMGG 123 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH----HHH----hHhhcc----cchHH----HHHHHHHccCc
Confidence 5889999999999999887776 1 1111123444442 122 211111 11111 12222222346
Q ss_pred EEEEcCcccc-----------ccccccccCCCCCCCCeEEEEecCChhHHhhcc--------CCCeEeCCCCCHHHHHHH
Q 001457 262 LIILDDLWGK-----------LDLAVVGIPYGEEHKGCKIILTSRFKEVCDEME--------STNYVQVEELTDEDRLIL 322 (1074)
Q Consensus 262 LlVlDdv~~~-----------~~~~~~~~~~~~~~~gs~iivTTR~~~v~~~~~--------~~~~~~l~~L~~~~~~~l 322 (1074)
+|++|++..- +.++.+...+.....+.+||++|..+....... ....+++++++.+|-.++
T Consensus 124 vL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I 203 (284)
T TIGR02880 124 VLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVI 203 (284)
T ss_pred EEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHH
Confidence 8999998621 112233333333345667888776543321111 124689999999999999
Q ss_pred HHHhcC
Q 001457 323 FKKKAG 328 (1074)
Q Consensus 323 f~~~a~ 328 (1074)
+...+.
T Consensus 204 ~~~~l~ 209 (284)
T TIGR02880 204 AGLMLK 209 (284)
T ss_pred HHHHHH
Confidence 877764
No 118
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.71 E-value=0.00043 Score=81.34 Aligned_cols=177 Identities=15% Similarity=0.129 Sum_probs=99.9
Q ss_pred CCcccCcchHHHHHHHHHHHhcCCCceeEEEEEcCCCCcHHHHHHHHHhh-cCC---------------------CCeEE
Q 001457 157 PEFVPLKSALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ-EIP---------------------FDKVI 214 (1074)
Q Consensus 157 ~~~~~~~~r~~~~~~l~~~l~~~~~~~~vi~I~G~gG~GKTtLa~~v~~~-~~~---------------------F~~~~ 214 (1074)
..|..+.|.+..++.+..++..+. -.+.+.++|+.|+||||+|+.+... ... |...+
T Consensus 13 ~~f~divGq~~v~~~L~~~i~~~~-~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~ 91 (527)
T PRK14969 13 KSFSELVGQEHVVRALTNALEQQR-LHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLI 91 (527)
T ss_pred CcHHHhcCcHHHHHHHHHHHHcCC-CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCcee
Confidence 445556678888888888877655 1345689999999999999999876 111 11122
Q ss_pred EEEecCCcCHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHccCeEEEEEcCcccc--ccccccccCCCCCCCCeEEEE
Q 001457 215 FVRVTQTPDVKRVQDEIARFLNTELEGDVEVLRAAFLSERLKRQKRVLIILDDLWGK--LDLAVVGIPYGEEHKGCKIIL 292 (1074)
Q Consensus 215 wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~--~~~~~~~~~~~~~~~gs~iiv 292 (1074)
++..+....+.. .++++..+. ..-..+++-++|+|++..- ...+.+...+......+.+|+
T Consensus 92 ei~~~~~~~vd~-ir~l~~~~~----------------~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL 154 (527)
T PRK14969 92 EVDAASNTQVDA-MRELLDNAQ----------------YAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFIL 154 (527)
T ss_pred EeeccccCCHHH-HHHHHHHHh----------------hCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEE
Confidence 222211111111 111111110 0001356779999999754 233333333333234566665
Q ss_pred ecCC-hhHHhh-ccCCCeEeCCCCCHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhCCChH
Q 001457 293 TSRF-KEVCDE-MESTNYVQVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLPN 352 (1074)
Q Consensus 293 TTR~-~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~i~~~c~glPL 352 (1074)
+|.+ ..+... ......+++++++.++..+.+.+.+.... .....+....|++.++|.+-
T Consensus 155 ~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~eg-i~~~~~al~~la~~s~Gslr 215 (527)
T PRK14969 155 ATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQEN-IPFDATALQLLARAAAGSMR 215 (527)
T ss_pred EeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHH
Confidence 5543 333211 11225789999999998888877664211 22234566889999999774
No 119
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.71 E-value=0.00076 Score=71.08 Aligned_cols=196 Identities=14% Similarity=0.109 Sum_probs=116.2
Q ss_pred CCCcccCcchHHHHHHHHHHHhcCC-CceeEEEEEcCCCCcHHHHHHHHHhh-cCCC------CeEEEEEecCCcCHHHH
Q 001457 156 TPEFVPLKSALEVIKSVMKLLKDNS-ISINIIGVYGSGGIGKTTLMKQVMKQ-EIPF------DKVIFVRVTQTPDVKRV 227 (1074)
Q Consensus 156 ~~~~~~~~~r~~~~~~l~~~l~~~~-~~~~vi~I~G~gG~GKTtLa~~v~~~-~~~F------~~~~wv~vs~~~~~~~~ 227 (1074)
.+..+|...-.+.++.+-+.+.... ...+-+.|||.+|.|||++++++... ...+ -.++.|.....++...+
T Consensus 33 ~~rWIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~ 112 (302)
T PF05621_consen 33 ADRWIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRF 112 (302)
T ss_pred cCCeecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHH
Confidence 3445555544555665555555443 23567999999999999999999877 1112 14667788889999999
Q ss_pred HHHHHHHhccCCCcchH-HHHHHHHHHHHHccCeEEEEEcCcccc---------ccccccccCCCCCCCCeEEEEecCCh
Q 001457 228 QDEIARFLNTELEGDVE-VLRAAFLSERLKRQKRVLIILDDLWGK---------LDLAVVGIPYGEEHKGCKIILTSRFK 297 (1074)
Q Consensus 228 ~~~i~~~l~~~~~~~~~-~~~~~~l~~~l~~~k~~LlVlDdv~~~---------~~~~~~~~~~~~~~~gs~iivTTR~~ 297 (1074)
...|+.+++........ .....+..+.++.-+-=+||+|++.+. +.++.++ .+...-.=+-|.|-|+.-
T Consensus 113 Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK-~L~NeL~ipiV~vGt~~A 191 (302)
T PF05621_consen 113 YSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALK-FLGNELQIPIVGVGTREA 191 (302)
T ss_pred HHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHH-HHhhccCCCeEEeccHHH
Confidence 99999999987644333 333444445555556678999999763 1111111 111111234455556533
Q ss_pred hHHhhcc-----CCCeEeCCCCCHHH-HHHHHHHhcC----CCCCCchhHHHHHHHHHHhCCChH
Q 001457 298 EVCDEME-----STNYVQVEELTDED-RLILFKKKAG----LPEGTKAFDRAAEEVVRQCGKLPN 352 (1074)
Q Consensus 298 ~v~~~~~-----~~~~~~l~~L~~~~-~~~lf~~~a~----~~~~~~~~~~~~~~i~~~c~glPL 352 (1074)
.-+-..+ ...++.++.-..++ ...|+..... .....-...+++..|...++|+.=
T Consensus 192 ~~al~~D~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG 256 (302)
T PF05621_consen 192 YRALRTDPQLASRFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIG 256 (302)
T ss_pred HHHhccCHHHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchH
Confidence 2221111 11356666555544 4444433222 222223457899999999999863
No 120
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.70 E-value=2e-05 Score=94.66 Aligned_cols=129 Identities=17% Similarity=0.197 Sum_probs=94.7
Q ss_pred CCCccEEEccCCC--CCCCChhHHhcCCCccEEEecCCccC--CCCCCccCCccCCeeeccCCCCCCCccccCCCCccEE
Q 001457 530 CPRLTTLFLQNNP--FADIPNAFFEHTREIKNLDLSSTNIS--SLAPSLPCLEKLRSLHLENTHLNDASLIREFGELEVL 605 (1074)
Q Consensus 530 ~~~Lr~L~l~~~~--~~~~~~~~~~~l~~L~~L~l~~~~~~--~lp~~i~~l~~Lr~L~L~~~~l~~~~~i~~l~~L~~L 605 (1074)
-.+|+.|+++|.. ...-+......+|.|+.|.+++-.+. .+..-..++++|+.||+++++++....+++|+|||+|
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L 200 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVL 200 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHH
Confidence 3578999998865 23344455567999999999987664 2233456789999999999999999999999999999
Q ss_pred EeeCCCCcccC--ccccCCCCCCEEeCCCCcCCCCc--Ch---hhhcCCCCcCEEEccCC
Q 001457 606 ILKGSRIVELP--NGIGTVSNLKLLDLSNNLFLQVI--PP---NVISKLSQLEELYVGNS 658 (1074)
Q Consensus 606 ~L~~~~i~~lp--~~i~~L~~L~~L~l~~~~~~~~~--p~---~~i~~L~~L~~L~l~~~ 658 (1074)
.+++-.+..-+ ..+.+|++|++||++........ .. +.-..|++|+.|+.++.
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgT 260 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGT 260 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCc
Confidence 99987776543 34788999999999986543321 11 11234778888887764
No 121
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.68 E-value=3.2e-05 Score=56.42 Aligned_cols=36 Identities=36% Similarity=0.648 Sum_probs=15.8
Q ss_pred CccEEEecCCccCCCCCCccCCccCCeeeccCCCCC
Q 001457 556 EIKNLDLSSTNISSLAPSLPCLEKLRSLHLENTHLN 591 (1074)
Q Consensus 556 ~L~~L~l~~~~~~~lp~~i~~l~~Lr~L~L~~~~l~ 591 (1074)
+|++|++++|.|+.+|+.+++|++|++|++++|+++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCC
Confidence 344444444444444444444444444444444443
No 122
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.66 E-value=0.002 Score=74.12 Aligned_cols=154 Identities=21% Similarity=0.274 Sum_probs=90.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhh-cCCC--CeEEEEEecCCcCHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHccC
Q 001457 183 INIIGVYGSGGIGKTTLMKQVMKQ-EIPF--DKVIFVRVTQTPDVKRVQDEIARFLNTELEGDVEVLRAAFLSERLKRQK 259 (1074)
Q Consensus 183 ~~vi~I~G~gG~GKTtLa~~v~~~-~~~F--~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 259 (1074)
...+.|+|..|+|||+||+.+++. .... ..++|++. .++...+...+... ....+.+.+. +
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~------~~~~~~~~~~~~~~--------~~~~~~~~~~--~ 199 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSS------EKFTNDFVNALRNN--------KMEEFKEKYR--S 199 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEH------HHHHHHHHHHHHcC--------CHHHHHHHHH--h
Confidence 456899999999999999999998 3322 24556643 33444444444321 1222334443 2
Q ss_pred eEEEEEcCccccc---cc-cccccCCCC-CCCCeEEEEecCCh-h--------HHhhccCCCeEeCCCCCHHHHHHHHHH
Q 001457 260 RVLIILDDLWGKL---DL-AVVGIPYGE-EHKGCKIILTSRFK-E--------VCDEMESTNYVQVEELTDEDRLILFKK 325 (1074)
Q Consensus 260 ~~LlVlDdv~~~~---~~-~~~~~~~~~-~~~gs~iivTTR~~-~--------v~~~~~~~~~~~l~~L~~~~~~~lf~~ 325 (1074)
.-+||+||+.... .+ +.+...+.. ...|..||+|+... . +...+....++.+++.+.++-..++.+
T Consensus 200 ~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~ 279 (405)
T TIGR00362 200 VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQK 279 (405)
T ss_pred CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHH
Confidence 3488999997531 11 112111111 01345688877542 1 122233334789999999999999988
Q ss_pred hcCCCCCCchhHHHHHHHHHHhCCChHH
Q 001457 326 KAGLPEGTKAFDRAAEEVVRQCGKLPNA 353 (1074)
Q Consensus 326 ~a~~~~~~~~~~~~~~~i~~~c~glPLa 353 (1074)
++... ...--+++...|++.+.|-+-.
T Consensus 280 ~~~~~-~~~l~~e~l~~ia~~~~~~~r~ 306 (405)
T TIGR00362 280 KAEEE-GLELPDEVLEFIAKNIRSNVRE 306 (405)
T ss_pred HHHHc-CCCCCHHHHHHHHHhcCCCHHH
Confidence 88632 1222357788888888886543
No 123
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.66 E-value=0.0003 Score=72.62 Aligned_cols=188 Identities=19% Similarity=0.174 Sum_probs=115.0
Q ss_pred CCCCCcccCcchHHHHHHHHHHHhcCCCceeEEEEEcCCCCcHHHHHHHHHhh---cCCCCeEE-EEEecCCcCHHHHHH
Q 001457 154 IPTPEFVPLKSALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ---EIPFDKVI-FVRVTQTPDVKRVQD 229 (1074)
Q Consensus 154 ~~~~~~~~~~~r~~~~~~l~~~l~~~~~~~~vi~I~G~gG~GKTtLa~~v~~~---~~~F~~~~-wv~vs~~~~~~~~~~ 229 (1074)
..+..+..+.|.+..+.-+.+.+.... ..+...+|++|.|||+-|+.+... .+-|.+++ =.++|..-.+.-+-.
T Consensus 30 YrPkt~de~~gQe~vV~~L~~a~~~~~--lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGisvvr~ 107 (346)
T KOG0989|consen 30 YRPKTFDELAGQEHVVQVLKNALLRRI--LPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGISVVRE 107 (346)
T ss_pred hCCCcHHhhcchHHHHHHHHHHHhhcC--CceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccccccchhh
Confidence 345556667788888888888887755 889999999999999999988887 56676555 345555433321111
Q ss_pred HHHHHhccCCCcchHHHHHHHHHHHH-----HccCe-EEEEEcCccc--cccccccccCCCCCCCCeEEEEecCChhH-H
Q 001457 230 EIARFLNTELEGDVEVLRAAFLSERL-----KRQKR-VLIILDDLWG--KLDLAVVGIPYGEEHKGCKIILTSRFKEV-C 300 (1074)
Q Consensus 230 ~i~~~l~~~~~~~~~~~~~~~l~~~l-----~~~k~-~LlVlDdv~~--~~~~~~~~~~~~~~~~gs~iivTTR~~~v-~ 300 (1074)
.+ .....+.-.. ..-++ -.||||+++. .+.|..+..........+|.|..|-.-+. .
T Consensus 108 Ki--------------k~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii 173 (346)
T KOG0989|consen 108 KI--------------KNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRII 173 (346)
T ss_pred hh--------------cCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCC
Confidence 11 0001111100 01123 4788899886 47788776655555566776655543332 2
Q ss_pred hhc-cCCCeEeCCCCCHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhCCC-hHHHHHHH
Q 001457 301 DEM-ESTNYVQVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKL-PNAIVIIG 358 (1074)
Q Consensus 301 ~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~i~~~c~gl-PLai~~~~ 358 (1074)
... ....-++.++|.+++...-++..+..+ ..+-..+..+.|++.++|- --|+.++-
T Consensus 174 ~pi~SRC~KfrFk~L~d~~iv~rL~~Ia~~E-~v~~d~~al~~I~~~S~GdLR~Ait~Lq 232 (346)
T KOG0989|consen 174 RPLVSRCQKFRFKKLKDEDIVDRLEKIASKE-GVDIDDDALKLIAKISDGDLRRAITTLQ 232 (346)
T ss_pred hHHHhhHHHhcCCCcchHHHHHHHHHHHHHh-CCCCCHHHHHHHHHHcCCcHHHHHHHHH
Confidence 221 122468899999999888887777521 2233356678899999883 34444443
No 124
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.66 E-value=0.00096 Score=77.28 Aligned_cols=183 Identities=13% Similarity=0.088 Sum_probs=103.9
Q ss_pred CCCcccCcchHHHHHHHHHHHhcCCCceeEEEEEcCCCCcHHHHHHHHHhh--cCCC-C-------------------eE
Q 001457 156 TPEFVPLKSALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ--EIPF-D-------------------KV 213 (1074)
Q Consensus 156 ~~~~~~~~~r~~~~~~l~~~l~~~~~~~~vi~I~G~gG~GKTtLa~~v~~~--~~~F-~-------------------~~ 213 (1074)
+..+..+.|.+...+.+...+..+. -.++..++|+.|+||||+|+.+.+. .... + .+
T Consensus 10 P~~fdeiiGqe~v~~~L~~~I~~gr-l~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv 88 (535)
T PRK08451 10 PKHFDELIGQESVSKTLSLALDNNR-LAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDI 88 (535)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeE
Confidence 3445556777777788888876665 2346689999999999999988776 1110 0 11
Q ss_pred EEEEecCCcCHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHccCeEEEEEcCcccc--ccccccccCCCCCCCCeEEE
Q 001457 214 IFVRVTQTPDVKRVQDEIARFLNTELEGDVEVLRAAFLSERLKRQKRVLIILDDLWGK--LDLAVVGIPYGEEHKGCKII 291 (1074)
Q Consensus 214 ~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~--~~~~~~~~~~~~~~~gs~ii 291 (1074)
+.+..+....+..+ ++++.+.. ..-..+++-++|+|++..- +..+.+...+-.....+++|
T Consensus 89 ~eldaas~~gId~I-Relie~~~----------------~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FI 151 (535)
T PRK08451 89 IEMDAASNRGIDDI-RELIEQTK----------------YKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFI 151 (535)
T ss_pred EEeccccccCHHHH-HHHHHHHh----------------hCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEE
Confidence 22221111111111 11111100 0000146678999998753 33343433332223467777
Q ss_pred EecCCh-hHHhh-ccCCCeEeCCCCCHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhCCChHHHHHH
Q 001457 292 LTSRFK-EVCDE-MESTNYVQVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLPNAIVII 357 (1074)
Q Consensus 292 vTTR~~-~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 357 (1074)
++|.+. .+... ......+++.+++.++....+.+.+.... ..-..+.+..|++.++|-+--+..+
T Consensus 152 L~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EG-i~i~~~Al~~Ia~~s~GdlR~alnl 218 (535)
T PRK08451 152 LATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEG-VSYEPEALEILARSGNGSLRDTLTL 218 (535)
T ss_pred EEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCcHHHHHHH
Confidence 666543 22211 12236889999999999888877664211 2223567889999999988544443
No 125
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.66 E-value=5e-06 Score=95.84 Aligned_cols=126 Identities=29% Similarity=0.413 Sum_probs=100.8
Q ss_pred CCCCccEEEccCCCCCCCChhHHhcCCCccEEEecCCccCCCCCCccCCccCCeeeccCCCCCCCccccCCCCccEEEee
Q 001457 529 KCPRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSLAPSLPCLEKLRSLHLENTHLNDASLIREFGELEVLILK 608 (1074)
Q Consensus 529 ~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~Lr~L~L~~~~l~~~~~i~~l~~L~~L~L~ 608 (1074)
.+..+..+.+..|.+..+.. ....++.|..|++.+|.|..+...+..+.+|++|++++|.|+....+..+..|+.|++.
T Consensus 70 ~l~~l~~l~l~~n~i~~~~~-~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~ 148 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAKILN-HLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLS 148 (414)
T ss_pred HhHhHHhhccchhhhhhhhc-ccccccceeeeeccccchhhcccchhhhhcchheeccccccccccchhhccchhhheec
Confidence 34555556666666655222 24678999999999999998877688999999999999999998889999999999999
Q ss_pred CCCCcccCccccCCCCCCEEeCCCCcCCCCcCh-hhhcCCCCcCEEEccCC
Q 001457 609 GSRIVELPNGIGTVSNLKLLDLSNNLFLQVIPP-NVISKLSQLEELYVGNS 658 (1074)
Q Consensus 609 ~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~~p~-~~i~~L~~L~~L~l~~~ 658 (1074)
+|.|..++. +..+++|+.+++++|.+... .. . ...+.+|+.+.+.+|
T Consensus 149 ~N~i~~~~~-~~~l~~L~~l~l~~n~i~~i-e~~~-~~~~~~l~~l~l~~n 196 (414)
T KOG0531|consen 149 GNLISDISG-LESLKSLKLLDLSYNRIVDI-ENDE-LSELISLEELDLGGN 196 (414)
T ss_pred cCcchhccC-CccchhhhcccCCcchhhhh-hhhh-hhhccchHHHhccCC
Confidence 999988754 56699999999999985443 33 1 367888888888876
No 126
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.66 E-value=0.0011 Score=75.12 Aligned_cols=177 Identities=13% Similarity=0.125 Sum_probs=99.4
Q ss_pred CCcccCcchHHHHHHHHHHHhcCCCceeEEEEEcCCCCcHHHHHHHHHhh-cC--------CCCeEE-EEEecCCcCHHH
Q 001457 157 PEFVPLKSALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ-EI--------PFDKVI-FVRVTQTPDVKR 226 (1074)
Q Consensus 157 ~~~~~~~~r~~~~~~l~~~l~~~~~~~~vi~I~G~gG~GKTtLa~~v~~~-~~--------~F~~~~-wv~vs~~~~~~~ 226 (1074)
..+..+.|.+..++.+.+.+..+. -.+.+.++|++|+||||+|+.+.+. .. .|...+ .+.-....+...
T Consensus 14 ~~~~~iig~~~~~~~l~~~i~~~~-~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 92 (367)
T PRK14970 14 QTFDDVVGQSHITNTLLNAIENNH-LAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSVDD 92 (367)
T ss_pred CcHHhcCCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCHHH
Confidence 344456678888888888887654 2458889999999999999999876 21 121111 111111111111
Q ss_pred HHHHHHHHhccCCCcchHHHHHHHHHHHHHccCeEEEEEcCcccc--ccccccccCCCCCCCCeEEEEec-CChhHHhh-
Q 001457 227 VQDEIARFLNTELEGDVEVLRAAFLSERLKRQKRVLIILDDLWGK--LDLAVVGIPYGEEHKGCKIILTS-RFKEVCDE- 302 (1074)
Q Consensus 227 ~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~--~~~~~~~~~~~~~~~gs~iivTT-R~~~v~~~- 302 (1074)
.+++++++... -. .+++-++|+|++... ..++.+...+......+.+|++| +...+...
T Consensus 93 -i~~l~~~~~~~---------------p~-~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l 155 (367)
T PRK14970 93 -IRNLIDQVRIP---------------PQ-TGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTI 155 (367)
T ss_pred -HHHHHHHHhhc---------------cc-cCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHH
Confidence 11222211100 01 145568999998643 23444432222222345555554 43333222
Q ss_pred ccCCCeEeCCCCCHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhCCChH
Q 001457 303 MESTNYVQVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLPN 352 (1074)
Q Consensus 303 ~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~i~~~c~glPL 352 (1074)
......++++++++++....+.+.+.... ..-..+....|++.++|-+-
T Consensus 156 ~sr~~~v~~~~~~~~~l~~~l~~~~~~~g-~~i~~~al~~l~~~~~gdlr 204 (367)
T PRK14970 156 LSRCQIFDFKRITIKDIKEHLAGIAVKEG-IKFEDDALHIIAQKADGALR 204 (367)
T ss_pred HhcceeEecCCccHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHhCCCCHH
Confidence 22335789999999999888887664211 11224678888888988654
No 127
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.65 E-value=0.00057 Score=77.54 Aligned_cols=171 Identities=19% Similarity=0.204 Sum_probs=92.4
Q ss_pred cCcchHHHHHHHHHHHhc---C--------CCceeEEEEEcCCCCcHHHHHHHHHhh-cCCCCeEEEEEecCCcCHHHHH
Q 001457 161 PLKSALEVIKSVMKLLKD---N--------SISINIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKRVQ 228 (1074)
Q Consensus 161 ~~~~r~~~~~~l~~~l~~---~--------~~~~~vi~I~G~gG~GKTtLa~~v~~~-~~~F~~~~wv~vs~~~~~~~~~ 228 (1074)
.+.|+++.++++.+.+.. . -...+-|.++|++|+|||++|+.+++. ... |+.++.. .+.
T Consensus 132 di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~-----~i~v~~~----~l~ 202 (389)
T PRK03992 132 DIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNAT-----FIRVVGS----ELV 202 (389)
T ss_pred HhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCC-----EEEeehH----HHh
Confidence 355666766666655421 1 022567899999999999999999988 433 2333221 111
Q ss_pred HHHHHHhccCCCcchHHHHHHHHHHHHHccCeEEEEEcCccccc------------c----ccccccCCC--CCCCCeEE
Q 001457 229 DEIARFLNTELEGDVEVLRAAFLSERLKRQKRVLIILDDLWGKL------------D----LAVVGIPYG--EEHKGCKI 290 (1074)
Q Consensus 229 ~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~------------~----~~~~~~~~~--~~~~gs~i 290 (1074)
... .+.. ......+.+........+|++||++... . +..+...+. ....+.+|
T Consensus 203 ----~~~----~g~~-~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~V 273 (389)
T PRK03992 203 ----QKF----IGEG-ARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKI 273 (389)
T ss_pred ----Hhh----ccch-HHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEE
Confidence 110 0111 1122223333333567899999987520 0 111111111 11235678
Q ss_pred EEecCChhHHh-hc----cCCCeEeCCCCCHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhCCCh
Q 001457 291 ILTSRFKEVCD-EM----ESTNYVQVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLP 351 (1074)
Q Consensus 291 ivTTR~~~v~~-~~----~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~i~~~c~glP 351 (1074)
|.||...+... .+ .-+..+.++..+.++-.++|+.++......++ .....+++.+.|.-
T Consensus 274 I~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~--~~~~~la~~t~g~s 337 (389)
T PRK03992 274 IAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADD--VDLEELAELTEGAS 337 (389)
T ss_pred EEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCc--CCHHHHHHHcCCCC
Confidence 88887544321 11 12357899999999999999887753221111 11345666666643
No 128
>CHL00181 cbbX CbbX; Provisional
Probab=97.65 E-value=0.00076 Score=72.78 Aligned_cols=129 Identities=16% Similarity=0.156 Sum_probs=70.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh--cCCC-CeEEEEEecCCcCHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHccCe
Q 001457 184 NIIGVYGSGGIGKTTLMKQVMKQ--EIPF-DKVIFVRVTQTPDVKRVQDEIARFLNTELEGDVEVLRAAFLSERLKRQKR 260 (1074)
Q Consensus 184 ~vi~I~G~gG~GKTtLa~~v~~~--~~~F-~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~ 260 (1074)
..+.++|.+|+||||+|+.+++. ...+ ...-|+.++.. .+ ...... ...... .+.+.....
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~----~l----~~~~~g----~~~~~~----~~~l~~a~g 123 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRD----DL----VGQYIG----HTAPKT----KEVLKKAMG 123 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHH----HH----HHHHhc----cchHHH----HHHHHHccC
Confidence 35789999999999999999876 2111 11124554421 22 111111 111111 122221233
Q ss_pred EEEEEcCcccc-----------ccccccccCCCCCCCCeEEEEecCChhHHhhc--------cCCCeEeCCCCCHHHHHH
Q 001457 261 VLIILDDLWGK-----------LDLAVVGIPYGEEHKGCKIILTSRFKEVCDEM--------ESTNYVQVEELTDEDRLI 321 (1074)
Q Consensus 261 ~LlVlDdv~~~-----------~~~~~~~~~~~~~~~gs~iivTTR~~~v~~~~--------~~~~~~~l~~L~~~~~~~ 321 (1074)
-+|++|++... +..+.+...+.....+.+||+++..+.+.... .....+++++++.+|-.+
T Consensus 124 gVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~ 203 (287)
T CHL00181 124 GVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQ 203 (287)
T ss_pred CEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHH
Confidence 59999998642 11122222232333466788887654432111 123478999999999988
Q ss_pred HHHHhcC
Q 001457 322 LFKKKAG 328 (1074)
Q Consensus 322 lf~~~a~ 328 (1074)
++...+.
T Consensus 204 I~~~~l~ 210 (287)
T CHL00181 204 IAKIMLE 210 (287)
T ss_pred HHHHHHH
Confidence 8877764
No 129
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.65 E-value=0.00073 Score=82.81 Aligned_cols=175 Identities=14% Similarity=0.091 Sum_probs=102.6
Q ss_pred CCCcccCcchHHHHHHHHHHHhcCCCceeEEEEEcCCCCcHHHHHHHHHhh-c--CCCC---------------------
Q 001457 156 TPEFVPLKSALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ-E--IPFD--------------------- 211 (1074)
Q Consensus 156 ~~~~~~~~~r~~~~~~l~~~l~~~~~~~~vi~I~G~gG~GKTtLa~~v~~~-~--~~F~--------------------- 211 (1074)
...|..+.|.+..++.|..++..+. -.+.+.++|..|+||||+|+.+.+. . ....
T Consensus 11 P~~f~eiiGqe~v~~~L~~~i~~~r-i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~ 89 (824)
T PRK07764 11 PATFAEVIGQEHVTEPLSTALDSGR-INHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSL 89 (824)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhCC-CCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCC
Confidence 3445556678888888888887665 1346789999999999999999877 1 1110
Q ss_pred eEEEEEecCCcCHHHHHHHHHHHhccCCCcchHHHHHHHHHHHH----HccCeEEEEEcCcccc--ccccccccCCCCCC
Q 001457 212 KVIFVRVTQTPDVKRVQDEIARFLNTELEGDVEVLRAAFLSERL----KRQKRVLIILDDLWGK--LDLAVVGIPYGEEH 285 (1074)
Q Consensus 212 ~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l----~~~k~~LlVlDdv~~~--~~~~~~~~~~~~~~ 285 (1074)
.+++++-.....+.. +..+++.+ ..+++-++|+|++... ..++.|...+..-.
T Consensus 90 dv~eidaas~~~Vd~---------------------iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP 148 (824)
T PRK07764 90 DVTEIDAASHGGVDD---------------------ARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPP 148 (824)
T ss_pred cEEEecccccCCHHH---------------------HHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCC
Confidence 012221111111111 11122211 1356668899998753 33444443333333
Q ss_pred CCeEEEEec-CChhHHhhc-cCCCeEeCCCCCHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhCCChHH
Q 001457 286 KGCKIILTS-RFKEVCDEM-ESTNYVQVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLPNA 353 (1074)
Q Consensus 286 ~gs~iivTT-R~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~i~~~c~glPLa 353 (1074)
..+.+|++| ....+...+ .....|++..++.++-.+.+.+.+.... .....+....|++.++|-+..
T Consensus 149 ~~~~fIl~tt~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EG-v~id~eal~lLa~~sgGdlR~ 217 (824)
T PRK07764 149 EHLKFIFATTEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEG-VPVEPGVLPLVIRAGGGSVRD 217 (824)
T ss_pred CCeEEEEEeCChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHH
Confidence 456666555 444454333 2336899999999998888877654211 222345567889999997743
No 130
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.63 E-value=0.0012 Score=77.72 Aligned_cols=197 Identities=15% Similarity=0.079 Sum_probs=105.8
Q ss_pred CCCcccCcchHHHHHHHHHHHhcCCCceeEEEEEcCCCCcHHHHHHHHHhh-c--CCCCeEEEEEecCCcCHHHHHHHHH
Q 001457 156 TPEFVPLKSALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ-E--IPFDKVIFVRVTQTPDVKRVQDEIA 232 (1074)
Q Consensus 156 ~~~~~~~~~r~~~~~~l~~~l~~~~~~~~vi~I~G~gG~GKTtLa~~v~~~-~--~~F~~~~wv~vs~~~~~~~~~~~i~ 232 (1074)
+..|..+.|.+..++.+..++..+. -...+.++|+.|+||||+|+.+.+. . ...+ + ..++.-...+.|.
T Consensus 9 P~~f~eivGq~~i~~~L~~~i~~~r-~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~---~----~pCg~C~~C~~i~ 80 (584)
T PRK14952 9 PATFAEVVGQEHVTEPLSSALDAGR-INHAYLFSGPRGCGKTSSARILARSLNCAQGPT---A----TPCGVCESCVALA 80 (584)
T ss_pred CCcHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhccccCCC---C----CcccccHHHHHhh
Confidence 3445556778888888888887655 1345789999999999999999877 1 1110 0 0000001111111
Q ss_pred HHhccC-----CCc--chHHHHHHHHHHHHH----ccCeEEEEEcCcccc--ccccccccCCCCCCCCeEEEE-ecCChh
Q 001457 233 RFLNTE-----LEG--DVEVLRAAFLSERLK----RQKRVLIILDDLWGK--LDLAVVGIPYGEEHKGCKIIL-TSRFKE 298 (1074)
Q Consensus 233 ~~l~~~-----~~~--~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~~~~~~~~~~~gs~iiv-TTR~~~ 298 (1074)
..-+.. .+. ....+....+.+... .+++-++|+|++..- ...+.+...+........+|+ ||....
T Consensus 81 ~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~k 160 (584)
T PRK14952 81 PNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEK 160 (584)
T ss_pred cccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHh
Confidence 000000 000 000111112222211 256668999998743 344444333333333555554 555555
Q ss_pred HHhh-ccCCCeEeCCCCCHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhCCChH-HHHHHHHHH
Q 001457 299 VCDE-MESTNYVQVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLPN-AIVIIGTAL 361 (1074)
Q Consensus 299 v~~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~i~~~c~glPL-ai~~~~~~l 361 (1074)
+... ......+++.+++.++..+.+.+.+.... ..-..+....|++.++|-+- |+..+-.++
T Consensus 161 ll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~eg-i~i~~~al~~Ia~~s~GdlR~aln~Ldql~ 224 (584)
T PRK14952 161 VLPTIRSRTHHYPFRLLPPRTMRALIARICEQEG-VVVDDAVYPLVIRAGGGSPRDTLSVLDQLL 224 (584)
T ss_pred hHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 5433 23346899999999998888877664211 12224567788999999773 444444433
No 131
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.62 E-value=3.6e-06 Score=100.28 Aligned_cols=140 Identities=15% Similarity=0.154 Sum_probs=66.2
Q ss_pred HhccceeeeccCCCccccc-ccccccCCCccEEEEecc-ccccccc---cCcccccccceeEEEeeecccceeecccccc
Q 001457 745 LEKTEYLTLTRSSNLQDIG-EIDVQGFTGLMCMHLRAC-SMQRIFH---SNFYPTVQILEELHVEYCYSLKEVFCLEDIE 819 (1074)
Q Consensus 745 ~~~L~~L~L~~~~~l~~~~-~l~~~~l~~L~~L~L~~~-~~~~~~~---~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~ 819 (1074)
+++|+.|.+.+|..+.+.. .-....+++|+.|++++| ......+ ......+++|+.|++++|..+.+. ++.
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~----~l~ 262 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDI----GLS 262 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCch----hHH
Confidence 5677777777776666532 112234677777777763 1111111 123344566666666665532221 111
Q ss_pred cccccCCCcceeecCCccCcceeeccccccccccccceEEEecCCCccccccchhHhhhcCCCceecccc
Q 001457 820 GEQAGLKRLRELVLVGLPKVLTIWKGNHSVVYLKTLKLMKVKDCGKLRYLFSRTLAEGLGNLEDLSILKC 889 (1074)
Q Consensus 820 ~~~~~~~~L~~L~L~~~~~L~~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c 889 (1074)
.....+|+|+.|.+.+|+.++.... ..-...+++|++|+++.|..+++........++++|+.|.+..+
T Consensus 263 ~l~~~c~~L~~L~l~~c~~lt~~gl-~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~ 331 (482)
T KOG1947|consen 263 ALASRCPNLETLSLSNCSNLTDEGL-VSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSL 331 (482)
T ss_pred HHHhhCCCcceEccCCCCccchhHH-HHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhc
Confidence 1112255666666555654332100 01113455566666666665544322233344555555444443
No 132
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.62 E-value=0.00026 Score=79.09 Aligned_cols=103 Identities=17% Similarity=0.172 Sum_probs=67.6
Q ss_pred CcchHHHHHHHHHHHhcCCCceeEEEEEcCCCCcHHHHHHHHHhh---cCCCCeEEEEEecCCcCHHHHHHHHHHHhccC
Q 001457 162 LKSALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ---EIPFDKVIFVRVTQTPDVKRVQDEIARFLNTE 238 (1074)
Q Consensus 162 ~~~r~~~~~~l~~~l~~~~~~~~vi~I~G~gG~GKTtLa~~v~~~---~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~ 238 (1074)
....++.++.++..+.... .|.++|++|+|||++|+.+++. ...|+.+.||.+++.++..+++....-. +..
T Consensus 177 ~~i~e~~le~l~~~L~~~~----~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~-~vg 251 (459)
T PRK11331 177 LFIPETTIETILKRLTIKK----NIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPN-GVG 251 (459)
T ss_pred ccCCHHHHHHHHHHHhcCC----CEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCC-CCC
Confidence 3456778888888887543 7788999999999999999988 4567888999999988877766433110 000
Q ss_pred CCcchHHH-HHHHHHHHHH-ccCeEEEEEcCcccc
Q 001457 239 LEGDVEVL-RAAFLSERLK-RQKRVLIILDDLWGK 271 (1074)
Q Consensus 239 ~~~~~~~~-~~~~l~~~l~-~~k~~LlVlDdv~~~ 271 (1074)
. ..... ..+.+..... ..+++++|+|++...
T Consensus 252 y--~~~~G~f~~~~~~A~~~p~~~~vliIDEINRa 284 (459)
T PRK11331 252 F--RRKDGIFYNFCQQAKEQPEKKYVFIIDEINRA 284 (459)
T ss_pred e--EecCchHHHHHHHHHhcccCCcEEEEehhhcc
Confidence 0 00011 1111122111 247899999998754
No 133
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=97.62 E-value=0.00081 Score=79.62 Aligned_cols=196 Identities=12% Similarity=0.105 Sum_probs=108.0
Q ss_pred CCCCcccCcchHHHHHHHHHHHhcCCCceeEEEEEcCCCCcHHHHHHHHHhh-cCC--CC--eEEEEEecCCcCHHHHHH
Q 001457 155 PTPEFVPLKSALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ-EIP--FD--KVIFVRVTQTPDVKRVQD 229 (1074)
Q Consensus 155 ~~~~~~~~~~r~~~~~~l~~~l~~~~~~~~vi~I~G~gG~GKTtLa~~v~~~-~~~--F~--~~~wv~vs~~~~~~~~~~ 229 (1074)
.+..+..+.|.+..++.+.+.+..+. -...+.++|+.|+||||+|+.+.+. ... .. ...+- .+..-.-.+
T Consensus 19 RP~~f~dliGq~~~v~~L~~~~~~gr-i~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~----~cg~c~~C~ 93 (598)
T PRK09111 19 RPQTFDDLIGQEAMVRTLTNAFETGR-IAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTID----LCGVGEHCQ 93 (598)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccc----cCcccHHHH
Confidence 34556667788888888888887654 2346889999999999999999887 211 11 00000 001111112
Q ss_pred HHHHHhccCC---C--cchHHHHHHHHHHHHH----ccCeEEEEEcCcccc--ccccccccCCCCCCCCeEEEEe-cCCh
Q 001457 230 EIARFLNTEL---E--GDVEVLRAAFLSERLK----RQKRVLIILDDLWGK--LDLAVVGIPYGEEHKGCKIILT-SRFK 297 (1074)
Q Consensus 230 ~i~~~l~~~~---~--~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~~~~~~~~~~~gs~iivT-TR~~ 297 (1074)
.|...-..+. + .....+.+..+.+... .+++-++|+|++..- ...+.+...+..-..++++|++ |..+
T Consensus 94 ~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~ 173 (598)
T PRK09111 94 AIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIR 173 (598)
T ss_pred HHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChh
Confidence 2221111100 0 0000111222222221 245668999998654 2344443333333345666654 4444
Q ss_pred hHHhhc-cCCCeEeCCCCCHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhCCChHHHHH
Q 001457 298 EVCDEM-ESTNYVQVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLPNAIVI 356 (1074)
Q Consensus 298 ~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~i~~~c~glPLai~~ 356 (1074)
.+...+ .....+++..++.++....+.+.+... ...--.+....|++.++|-+.-+..
T Consensus 174 kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~ke-gi~i~~eAl~lIa~~a~Gdlr~al~ 232 (598)
T PRK09111 174 KVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKE-GVEVEDEALALIARAAEGSVRDGLS 232 (598)
T ss_pred hhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHcCCCHHHHHH
Confidence 443222 223688999999999998888876421 1122246778899999998855443
No 134
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.61 E-value=3.9e-06 Score=75.36 Aligned_cols=90 Identities=27% Similarity=0.343 Sum_probs=68.5
Q ss_pred CCCCccEEEccCCCCCCCChhHHhcCCCccEEEecCCccCCCCCCccCCccCCeeeccCCCCCC-CccccCCCCccEEEe
Q 001457 529 KCPRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSLAPSLPCLEKLRSLHLENTHLND-ASLIREFGELEVLIL 607 (1074)
Q Consensus 529 ~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~Lr~L~L~~~~l~~-~~~i~~l~~L~~L~L 607 (1074)
...+|...++++|.+.++|+.+-.+++.+..|++++|.+..+|..+..++.||.|+++.|.+.. |..+..|.+|-.|+.
T Consensus 51 ~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds 130 (177)
T KOG4579|consen 51 KGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDS 130 (177)
T ss_pred CCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcC
Confidence 3456777788888888888877777777888888888888888777778888888888887766 777777777777777
Q ss_pred eCCCCcccCcc
Q 001457 608 KGSRIVELPNG 618 (1074)
Q Consensus 608 ~~~~i~~lp~~ 618 (1074)
.++.+.++|-.
T Consensus 131 ~~na~~eid~d 141 (177)
T KOG4579|consen 131 PENARAEIDVD 141 (177)
T ss_pred CCCccccCcHH
Confidence 77766666654
No 135
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.61 E-value=6.9e-05 Score=54.72 Aligned_cols=34 Identities=41% Similarity=0.604 Sum_probs=18.3
Q ss_pred CccEEEeeCCCCcccCccccCCCCCCEEeCCCCc
Q 001457 601 ELEVLILKGSRIVELPNGIGTVSNLKLLDLSNNL 634 (1074)
Q Consensus 601 ~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~ 634 (1074)
+|++|++++|+|+.+|..+++|++|+.|++++|+
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~ 35 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNP 35 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCC
Confidence 4555555555555555555555555555555554
No 136
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.61 E-value=0.00043 Score=76.97 Aligned_cols=149 Identities=15% Similarity=0.143 Sum_probs=82.7
Q ss_pred CCCCcccCcchHHHHHHHHHHHhcCCCceeEEEEEcCCCCcHHHHHHHHHhh-cCCCCeEEEEEecCCcCHHHHHHHHHH
Q 001457 155 PTPEFVPLKSALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKRVQDEIAR 233 (1074)
Q Consensus 155 ~~~~~~~~~~r~~~~~~l~~~l~~~~~~~~vi~I~G~gG~GKTtLa~~v~~~-~~~F~~~~wv~vs~~~~~~~~~~~i~~ 233 (1074)
.+..+..+.|.++..+.+..++..+. ...++.++|++|+||||+|+.+++. ... ...++.+. ..... .++.+.
T Consensus 16 rP~~~~~~~~~~~~~~~l~~~~~~~~-~~~~lll~G~~G~GKT~la~~l~~~~~~~---~~~i~~~~-~~~~~-i~~~l~ 89 (316)
T PHA02544 16 RPSTIDECILPAADKETFKSIVKKGR-IPNMLLHSPSPGTGKTTVAKALCNEVGAE---VLFVNGSD-CRIDF-VRNRLT 89 (316)
T ss_pred CCCcHHHhcCcHHHHHHHHHHHhcCC-CCeEEEeeCcCCCCHHHHHHHHHHHhCcc---ceEeccCc-ccHHH-HHHHHH
Confidence 34455556778888888888876543 2467777999999999999999887 332 23444443 22111 111111
Q ss_pred HhccCCCcchHHHHHHHHHHHH-HccCeEEEEEcCcccc---ccccccccCCCCCCCCeEEEEecCChhH-Hhhc-cCCC
Q 001457 234 FLNTELEGDVEVLRAAFLSERL-KRQKRVLIILDDLWGK---LDLAVVGIPYGEEHKGCKIILTSRFKEV-CDEM-ESTN 307 (1074)
Q Consensus 234 ~l~~~~~~~~~~~~~~~l~~~l-~~~k~~LlVlDdv~~~---~~~~~~~~~~~~~~~gs~iivTTR~~~v-~~~~-~~~~ 307 (1074)
.+ .... ..+.+-+||+||+... +....+...+.....++++|+||..... .... ....
T Consensus 90 ~~----------------~~~~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~~ 153 (316)
T PHA02544 90 RF----------------ASTVSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCR 153 (316)
T ss_pred HH----------------HHhhcccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhce
Confidence 10 0000 0134568899999754 1112222222223357789988865432 1111 1123
Q ss_pred eEeCCCCCHHHHHHHHHH
Q 001457 308 YVQVEELTDEDRLILFKK 325 (1074)
Q Consensus 308 ~~~l~~L~~~~~~~lf~~ 325 (1074)
.+.++..+.++..+++..
T Consensus 154 ~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 154 VIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred EEEeCCCCHHHHHHHHHH
Confidence 567777777777665543
No 137
>PRK06620 hypothetical protein; Validated
Probab=97.61 E-value=0.0007 Score=69.70 Aligned_cols=130 Identities=17% Similarity=0.100 Sum_probs=76.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh-cCCCCeEEEEEecCCcCHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHccCeEE
Q 001457 184 NIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKRVQDEIARFLNTELEGDVEVLRAAFLSERLKRQKRVL 262 (1074)
Q Consensus 184 ~vi~I~G~gG~GKTtLa~~v~~~-~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~L 262 (1074)
+.+.|+|++|+|||+|++.+.+. .. .++. ..+.. . +.+ ...-+
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~-----~~~~--~~~~~--------------------~-------~~~--~~~d~ 88 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNA-----YIIK--DIFFN--------------------E-------EIL--EKYNA 88 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCC-----EEcc--hhhhc--------------------h-------hHH--hcCCE
Confidence 57899999999999999988776 22 1211 00000 0 111 13357
Q ss_pred EEEcCccccccccccccCCC-CCCCCeEEEEecCChh-------HHhhccCCCeEeCCCCCHHHHHHHHHHhcCCCCCCc
Q 001457 263 IILDDLWGKLDLAVVGIPYG-EEHKGCKIILTSRFKE-------VCDEMESTNYVQVEELTDEDRLILFKKKAGLPEGTK 334 (1074)
Q Consensus 263 lVlDdv~~~~~~~~~~~~~~-~~~~gs~iivTTR~~~-------v~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~ 334 (1074)
+++||+....+ ..+..-+. ....|..||+|++... ....+...-+++++++++++-..+..+.+... .-.
T Consensus 89 lliDdi~~~~~-~~lf~l~N~~~e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~-~l~ 166 (214)
T PRK06620 89 FIIEDIENWQE-PALLHIFNIINEKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSIS-SVT 166 (214)
T ss_pred EEEeccccchH-HHHHHHHHHHHhcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHc-CCC
Confidence 88899973221 01111111 0134678999887432 23334444589999999999888887776521 122
Q ss_pred hhHHHHHHHHHHhCCCh
Q 001457 335 AFDRAAEEVVRQCGKLP 351 (1074)
Q Consensus 335 ~~~~~~~~i~~~c~glP 351 (1074)
--+++..-|++.+.|--
T Consensus 167 l~~ev~~~L~~~~~~d~ 183 (214)
T PRK06620 167 ISRQIIDFLLVNLPREY 183 (214)
T ss_pred CCHHHHHHHHHHccCCH
Confidence 23567777877777644
No 138
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.59 E-value=0.0031 Score=73.52 Aligned_cols=177 Identities=20% Similarity=0.215 Sum_probs=102.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhh-cCCC--CeEEEEEecCCcCHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHccC
Q 001457 183 INIIGVYGSGGIGKTTLMKQVMKQ-EIPF--DKVIFVRVTQTPDVKRVQDEIARFLNTELEGDVEVLRAAFLSERLKRQK 259 (1074)
Q Consensus 183 ~~vi~I~G~gG~GKTtLa~~v~~~-~~~F--~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 259 (1074)
..-+.|+|..|+|||+||+.+.+. ...+ ..++|++.. .+...+...+... ....+.+.++ +
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~------~~~~~~~~~~~~~--------~~~~~~~~~~--~ 211 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSE------KFTNDFVNALRNN--------TMEEFKEKYR--S 211 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHH------HHHHHHHHHHHcC--------cHHHHHHHHh--c
Confidence 456899999999999999999999 4333 234566532 3333444433211 1123344443 3
Q ss_pred eEEEEEcCcccc---ccc-cccccCCCC-CCCCeEEEEecCChh---------HHhhccCCCeEeCCCCCHHHHHHHHHH
Q 001457 260 RVLIILDDLWGK---LDL-AVVGIPYGE-EHKGCKIILTSRFKE---------VCDEMESTNYVQVEELTDEDRLILFKK 325 (1074)
Q Consensus 260 ~~LlVlDdv~~~---~~~-~~~~~~~~~-~~~gs~iivTTR~~~---------v~~~~~~~~~~~l~~L~~~~~~~lf~~ 325 (1074)
.-+||+||+... ..+ +.+...+.. ...|..||+||.... +...+....++++++.+.++-..++.+
T Consensus 212 ~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~ 291 (450)
T PRK00149 212 VDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKK 291 (450)
T ss_pred CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHH
Confidence 458999999642 111 122111110 012455788776431 123344445799999999999999998
Q ss_pred hcCCCCCCchhHHHHHHHHHHhCCChHH----HHHHHHHH--cCC--ChhHHHHHHHHH
Q 001457 326 KAGLPEGTKAFDRAAEEVVRQCGKLPNA----IVIIGTAL--RHK--PVREWNEAIKRK 376 (1074)
Q Consensus 326 ~a~~~~~~~~~~~~~~~i~~~c~glPLa----i~~~~~~l--~~~--~~~~w~~~~~~l 376 (1074)
++... ...--+++...|++.+.|-.-. +..+..+- .++ +.+..+++++.+
T Consensus 292 ~~~~~-~~~l~~e~l~~ia~~~~~~~R~l~~~l~~l~~~~~~~~~~it~~~~~~~l~~~ 349 (450)
T PRK00149 292 KAEEE-GIDLPDEVLEFIAKNITSNVRELEGALNRLIAYASLTGKPITLELAKEALKDL 349 (450)
T ss_pred HHHHc-CCCCCHHHHHHHHcCcCCCHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHh
Confidence 87531 1223357788888888886643 33332221 122 566677777654
No 139
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.59 E-value=0.0012 Score=78.27 Aligned_cols=195 Identities=12% Similarity=0.122 Sum_probs=102.6
Q ss_pred CCCcccCcchHHHHHHHHHHHhcCCCceeEEEEEcCCCCcHHHHHHHHHhh---cCCCCeEEEEE-ecCCcCHHHHHHHH
Q 001457 156 TPEFVPLKSALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ---EIPFDKVIFVR-VTQTPDVKRVQDEI 231 (1074)
Q Consensus 156 ~~~~~~~~~r~~~~~~l~~~l~~~~~~~~vi~I~G~gG~GKTtLa~~v~~~---~~~F~~~~wv~-vs~~~~~~~~~~~i 231 (1074)
+..+..+.|.+..++.+..++..+. -...+.++|+.|+||||+|+.+.+. ...++.-.|.. +...+..-...+.+
T Consensus 12 P~~f~eivGQe~i~~~L~~~i~~~r-i~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~ 90 (620)
T PRK14954 12 PSKFADITAQEHITHTIQNSLRMDR-VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDF 90 (620)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHH
Confidence 3445556677777777777776654 1345889999999999999998877 22121111111 00111111111111
Q ss_pred HHHhccC---CCc--chHHHHHHHHHHHH----HccCeEEEEEcCcccc--ccccccccCCCCCCCCeEEEE-ecCChhH
Q 001457 232 ARFLNTE---LEG--DVEVLRAAFLSERL----KRQKRVLIILDDLWGK--LDLAVVGIPYGEEHKGCKIIL-TSRFKEV 299 (1074)
Q Consensus 232 ~~~l~~~---~~~--~~~~~~~~~l~~~l----~~~k~~LlVlDdv~~~--~~~~~~~~~~~~~~~gs~iiv-TTR~~~v 299 (1074)
...-..+ .++ ....+.+..+.+.+ ..+++-++|+|+++.- ...+.+...+..-...+.+|+ |++...+
T Consensus 91 ~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kL 170 (620)
T PRK14954 91 DAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKI 170 (620)
T ss_pred hccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhh
Confidence 1100000 000 00011122222222 1245668899998754 234444333333233455554 5444444
Q ss_pred Hhh-ccCCCeEeCCCCCHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhCCChH
Q 001457 300 CDE-MESTNYVQVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLPN 352 (1074)
Q Consensus 300 ~~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~i~~~c~glPL 352 (1074)
... ......+++.+++.++....+.+.+... ...-..+.+..|++.++|-.-
T Consensus 171 l~TI~SRc~~vef~~l~~~ei~~~L~~i~~~e-gi~I~~eal~~La~~s~Gdlr 223 (620)
T PRK14954 171 PATIASRCQRFNFKRIPLDEIQSQLQMICRAE-GIQIDADALQLIARKAQGSMR 223 (620)
T ss_pred hHHHHhhceEEecCCCCHHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHhCCCHH
Confidence 433 2334689999999999887777665311 111235677889999999553
No 140
>PF14516 AAA_35: AAA-like domain
Probab=97.59 E-value=0.0045 Score=68.64 Aligned_cols=192 Identities=12% Similarity=0.161 Sum_probs=110.9
Q ss_pred hHHHHHHHHHHHhcCCCceeEEEEEcCCCCcHHHHHHHHHhh-cCCCCeEEEEEecCC-----cCHHHHHHHHHH----H
Q 001457 165 ALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQT-----PDVKRVQDEIAR----F 234 (1074)
Q Consensus 165 r~~~~~~l~~~l~~~~~~~~vi~I~G~gG~GKTtLa~~v~~~-~~~F~~~~wv~vs~~-----~~~~~~~~~i~~----~ 234 (1074)
|...-+++.+.+...+ ..+.|.|+-.+|||||...+.+. +..=-.++++++..- .+..+.++.++. +
T Consensus 16 R~~~e~~~~~~i~~~G---~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~~~~~~~~~~~f~~~~~~~i~~~ 92 (331)
T PF14516_consen 16 RPPAEQECYQEIVQPG---SYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQLGSAIFSDLEQFLRWFCEEISRQ 92 (331)
T ss_pred chHHHHHHHHHHhcCC---CEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecCCCcccCCHHHHHHHHHHHHHHH
Confidence 4445556666766543 48999999999999999999888 333234567877652 245555555544 4
Q ss_pred hccCCCc--------chHHHHHHHHHHHHH--ccCeEEEEEcCcccccc--------ccccccCCC-----CCCCCeEEE
Q 001457 235 LNTELEG--------DVEVLRAAFLSERLK--RQKRVLIILDDLWGKLD--------LAVVGIPYG-----EEHKGCKII 291 (1074)
Q Consensus 235 l~~~~~~--------~~~~~~~~~l~~~l~--~~k~~LlVlDdv~~~~~--------~~~~~~~~~-----~~~~gs~ii 291 (1074)
++....- .........+.+.+. .+++.+|++|+|+..-. +..++.-.. .....-+.+
T Consensus 93 L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~~~~~L~li 172 (331)
T PF14516_consen 93 LKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNPIWQKLRLI 172 (331)
T ss_pred cCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCcccceEEEE
Confidence 4432210 011122233334332 36899999999975311 111111000 001111222
Q ss_pred Ee--cCChhHHhh----ccCCCeEeCCCCCHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhCCChHHHHHHHHHHcCC
Q 001457 292 LT--SRFKEVCDE----MESTNYVQVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLPNAIVIIGTALRHK 364 (1074)
Q Consensus 292 vT--TR~~~v~~~----~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~l~~~ 364 (1074)
+. |+....... +.....++|++++.+|...|..++-.. --....++|...+||+|.-+..++..+...
T Consensus 173 ~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~-----~~~~~~~~l~~~tgGhP~Lv~~~~~~l~~~ 246 (331)
T PF14516_consen 173 LAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE-----FSQEQLEQLMDWTGGHPYLVQKACYLLVEE 246 (331)
T ss_pred EecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc-----CCHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 22 221111111 122247899999999999998877431 112228899999999999999999999653
No 141
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.58 E-value=0.0018 Score=77.19 Aligned_cols=176 Identities=13% Similarity=0.109 Sum_probs=102.2
Q ss_pred CCCcccCcchHHHHHHHHHHHhcCCCceeEEEEEcCCCCcHHHHHHHHHhh--cCCCC-----------------eEEEE
Q 001457 156 TPEFVPLKSALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ--EIPFD-----------------KVIFV 216 (1074)
Q Consensus 156 ~~~~~~~~~r~~~~~~l~~~l~~~~~~~~vi~I~G~gG~GKTtLa~~v~~~--~~~F~-----------------~~~wv 216 (1074)
+..+..+.|.+..++.+..++..+. -.+.+.++|+.|+||||+|+.+... ..+.. .++++
T Consensus 14 P~~f~dIiGQe~~v~~L~~aI~~~r-l~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dviei 92 (725)
T PRK07133 14 PKTFDDIVGQDHIVQTLKNIIKSNK-ISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDIIEM 92 (725)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEEEE
Confidence 3445556778888888888887654 2356689999999999999999876 21110 00111
Q ss_pred EecCCcCHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHH----ccCeEEEEEcCcccc--ccccccccCCCCCCCCeEE
Q 001457 217 RVTQTPDVKRVQDEIARFLNTELEGDVEVLRAAFLSERLK----RQKRVLIILDDLWGK--LDLAVVGIPYGEEHKGCKI 290 (1074)
Q Consensus 217 ~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~~~~~~~~~~~gs~i 290 (1074)
....... ...++.+.+... .+++-++|+|++..- ..+..+...+-.......+
T Consensus 93 daasn~~---------------------vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tif 151 (725)
T PRK07133 93 DAASNNG---------------------VDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIF 151 (725)
T ss_pred eccccCC---------------------HHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEE
Confidence 1000000 111222322222 256779999998743 3444443333222334554
Q ss_pred E-EecCChhHHhh-ccCCCeEeCCCCCHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhCCChHHH
Q 001457 291 I-LTSRFKEVCDE-MESTNYVQVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLPNAI 354 (1074)
Q Consensus 291 i-vTTR~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~i~~~c~glPLai 354 (1074)
| +||+...+... ......+++.+++.++....+...+.... .....+.+..|++.++|-+--+
T Consensus 152 ILaTte~~KLl~TI~SRcq~ieF~~L~~eeI~~~L~~il~keg-I~id~eAl~~LA~lS~GslR~A 216 (725)
T PRK07133 152 ILATTEVHKIPLTILSRVQRFNFRRISEDEIVSRLEFILEKEN-ISYEKNALKLIAKLSSGSLRDA 216 (725)
T ss_pred EEEcCChhhhhHHHHhhceeEEccCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHH
Confidence 4 55555555432 22336899999999999888877654111 1222456788999999976433
No 142
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.58 E-value=0.0043 Score=68.12 Aligned_cols=190 Identities=15% Similarity=0.190 Sum_probs=115.0
Q ss_pred cCcchHHHHHHHHHHHhcC--CCceeEEEEEcCCCCcHHHHHHHHHhh-cCCC-C-eEEEEEecCCcCHHHHHHHHHHHh
Q 001457 161 PLKSALEVIKSVMKLLKDN--SISINIIGVYGSGGIGKTTLMKQVMKQ-EIPF-D-KVIFVRVTQTPDVKRVQDEIARFL 235 (1074)
Q Consensus 161 ~~~~r~~~~~~l~~~l~~~--~~~~~vi~I~G~gG~GKTtLa~~v~~~-~~~F-~-~~~wv~vs~~~~~~~~~~~i~~~l 235 (1074)
+..||+.++..+-.++... ...-+-+-|.|-+|.|||.+...|+.+ .... . .+++++...-.....++..|...+
T Consensus 151 ~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI~~~~ 230 (529)
T KOG2227|consen 151 TLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKIFSSL 230 (529)
T ss_pred CccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHHHHHH
Confidence 3668999888888877543 223678999999999999999999999 2221 2 457787766567788888888877
Q ss_pred ccCC-CcchHHHHHHHHHHHHHccC-eEEEEEcCcccccc--ccccccCCC-CCCCCeEEEEecCChhH------Hhhc-
Q 001457 236 NTEL-EGDVEVLRAAFLSERLKRQK-RVLIILDDLWGKLD--LAVVGIPYG-EEHKGCKIILTSRFKEV------CDEM- 303 (1074)
Q Consensus 236 ~~~~-~~~~~~~~~~~l~~~l~~~k-~~LlVlDdv~~~~~--~~~~~~~~~-~~~~gs~iivTTR~~~v------~~~~- 303 (1074)
-... ......+....+.+..+..+ -+|+|+|.++.-.. -..+...|. +.-+++|+|+.---..+ ....
T Consensus 231 ~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR~LprL~ 310 (529)
T KOG2227|consen 231 LQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDRFLPRLN 310 (529)
T ss_pred HHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHHHhhhhh
Confidence 2222 12222344455555555333 79999999874311 111111111 22346776654322211 1111
Q ss_pred ----cCCCeEeCCCCCHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhCCC
Q 001457 304 ----ESTNYVQVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKL 350 (1074)
Q Consensus 304 ----~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~i~~~c~gl 350 (1074)
..-..+..++-+.++-.++|.++.............++-+++|+.|.
T Consensus 311 ~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~ 361 (529)
T KOG2227|consen 311 LDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAP 361 (529)
T ss_pred hccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccC
Confidence 12256788999999999999988763333333334455555555443
No 143
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.57 E-value=0.0014 Score=78.15 Aligned_cols=178 Identities=12% Similarity=0.099 Sum_probs=104.3
Q ss_pred CCcccCcchHHHHHHHHHHHhcCCCceeEEEEEcCCCCcHHHHHHHHHhh-c-----------------------CCCCe
Q 001457 157 PEFVPLKSALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ-E-----------------------IPFDK 212 (1074)
Q Consensus 157 ~~~~~~~~r~~~~~~l~~~l~~~~~~~~vi~I~G~gG~GKTtLa~~v~~~-~-----------------------~~F~~ 212 (1074)
..+..+.|.+..++.+..++..+. -.+.+.++|+.|+||||+|+.+... . .+|+.
T Consensus 14 ~~f~~viGq~~~~~~L~~~i~~~~-l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~ 92 (614)
T PRK14971 14 STFESVVGQEALTTTLKNAIATNK-LAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNI 92 (614)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCce
Confidence 445556678888888888887765 1345889999999999999887775 1 12331
Q ss_pred EEEEEecCCcCHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHccCeEEEEEcCcccc--ccccccccCCCCCCCCeEE
Q 001457 213 VIFVRVTQTPDVKRVQDEIARFLNTELEGDVEVLRAAFLSERLKRQKRVLIILDDLWGK--LDLAVVGIPYGEEHKGCKI 290 (1074)
Q Consensus 213 ~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~--~~~~~~~~~~~~~~~gs~i 290 (1074)
..+..+....+..+ ++++.++... - . .+++-++|+|++..- ..++.+...+..-..++.+
T Consensus 93 -~~ld~~~~~~vd~I-r~li~~~~~~--------------P-~-~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tif 154 (614)
T PRK14971 93 -HELDAASNNSVDDI-RNLIEQVRIP--------------P-Q-IGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIF 154 (614)
T ss_pred -EEecccccCCHHHH-HHHHHHHhhC--------------c-c-cCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEE
Confidence 12222211111111 1111111100 0 0 245668899998753 3445444433333345666
Q ss_pred EE-ecCChhHHhhc-cCCCeEeCCCCCHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhCCChHHH
Q 001457 291 IL-TSRFKEVCDEM-ESTNYVQVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLPNAI 354 (1074)
Q Consensus 291 iv-TTR~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~i~~~c~glPLai 354 (1074)
|+ ||+...+.... ....+++++++++++....+.+.+.... ..-..+.+..|++.++|-.--+
T Consensus 155 IL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~eg-i~i~~~al~~La~~s~gdlr~a 219 (614)
T PRK14971 155 ILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEG-ITAEPEALNVIAQKADGGMRDA 219 (614)
T ss_pred EEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHH
Confidence 55 44545554332 2336899999999999888887664221 2223456788999999966433
No 144
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.53 E-value=0.0021 Score=77.07 Aligned_cols=195 Identities=14% Similarity=0.113 Sum_probs=106.3
Q ss_pred CCcccCcchHHHHHHHHHHHhcCCCceeEEEEEcCCCCcHHHHHHHHHhh-cCCCCeEEEEEecCCcCHHHHHHHHHHHh
Q 001457 157 PEFVPLKSALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKRVQDEIARFL 235 (1074)
Q Consensus 157 ~~~~~~~~r~~~~~~l~~~l~~~~~~~~vi~I~G~gG~GKTtLa~~v~~~-~~~F~~~~wv~vs~~~~~~~~~~~i~~~l 235 (1074)
..+..+.|.+..++.+..++..+. -...+.++|..|+||||+|+.+.+. ...... .....++.-...+.|....
T Consensus 13 ~~~~eiiGq~~~~~~L~~~i~~~~-i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~----~~~~~c~~c~~c~~i~~~~ 87 (585)
T PRK14950 13 QTFAELVGQEHVVQTLRNAIAEGR-VAHAYLFTGPRGVGKTSTARILAKAVNCTTND----PKGRPCGTCEMCRAIAEGS 87 (585)
T ss_pred CCHHHhcCCHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHHHhcCCCCC----CCCCCCccCHHHHHHhcCC
Confidence 344456677787888877776654 1346789999999999999999877 211100 0001111122233332222
Q ss_pred ccCC---C--cchHHHHHHHHHHHHH----ccCeEEEEEcCcccc--ccccccccCCCCCCCCeEEEEecCC-hhHHhhc
Q 001457 236 NTEL---E--GDVEVLRAAFLSERLK----RQKRVLIILDDLWGK--LDLAVVGIPYGEEHKGCKIILTSRF-KEVCDEM 303 (1074)
Q Consensus 236 ~~~~---~--~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~~~~~~~~~~~gs~iivTTR~-~~v~~~~ 303 (1074)
+.+. + .....+.+..+.+.+. .+++-++|+|++..- +..+.+...+......+.+|++|.+ ..+....
T Consensus 88 ~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll~tI 167 (585)
T PRK14950 88 AVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPATI 167 (585)
T ss_pred CCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhhHHH
Confidence 1110 0 0001111222222221 256778999998643 3344443333332345666665543 3333222
Q ss_pred -cCCCeEeCCCCCHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhCCChHHHHHH
Q 001457 304 -ESTNYVQVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLPNAIVII 357 (1074)
Q Consensus 304 -~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 357 (1074)
.....++++.++.++....+.+.+.... ..-..+.+..|++.++|-+..+...
T Consensus 168 ~SR~~~i~f~~l~~~el~~~L~~~a~~eg-l~i~~eal~~La~~s~Gdlr~al~~ 221 (585)
T PRK14950 168 LSRCQRFDFHRHSVADMAAHLRKIAAAEG-INLEPGALEAIARAATGSMRDAENL 221 (585)
T ss_pred HhccceeeCCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 2235788999999998888877765211 1123467888999999988544433
No 145
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.52 E-value=0.00014 Score=70.45 Aligned_cols=100 Identities=23% Similarity=0.390 Sum_probs=64.1
Q ss_pred CCccEEEccCCCCCCCChhHHhcCCCccEEEecCCccCCCCCCccC-CccCCeeeccCCCCCC---CccccCCCCccEEE
Q 001457 531 PRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSLAPSLPC-LEKLRSLHLENTHLND---ASLIREFGELEVLI 606 (1074)
Q Consensus 531 ~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~-l~~Lr~L~L~~~~l~~---~~~i~~l~~L~~L~ 606 (1074)
.+...++|++|.+..++. |..++.|.+|.+.+|.|+.+-+.+.. +++|..|.|.+|+|.. ...+..++.|++|.
T Consensus 42 d~~d~iDLtdNdl~~l~~--lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLDN--LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred cccceecccccchhhccc--CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 456667777777666554 56777777888888877777665543 4557777777777654 44455666677777
Q ss_pred eeCCCCcccCcc----ccCCCCCCEEeCCC
Q 001457 607 LKGSRIVELPNG----IGTVSNLKLLDLSN 632 (1074)
Q Consensus 607 L~~~~i~~lp~~----i~~L~~L~~L~l~~ 632 (1074)
+-+|.+...+.. +.++++|+.||..+
T Consensus 120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred ecCCchhcccCceeEEEEecCcceEeehhh
Confidence 666665544321 55566666666554
No 146
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.51 E-value=1.1e-05 Score=96.18 Aligned_cols=148 Identities=19% Similarity=0.140 Sum_probs=93.7
Q ss_pred HHhccceeeeccCCCccccc--ccccccCCCccEEEEecc-ccccccccCcccccccceeEEEeee-cccceeecccccc
Q 001457 744 LLEKTEYLTLTRSSNLQDIG--EIDVQGFTGLMCMHLRAC-SMQRIFHSNFYPTVQILEELHVEYC-YSLKEVFCLEDIE 819 (1074)
Q Consensus 744 ~~~~L~~L~L~~~~~l~~~~--~l~~~~l~~L~~L~L~~~-~~~~~~~~~~~~~l~~L~~L~l~~~-~~l~~~~~~~~~~ 819 (1074)
....++.+....+....... ..-...+++|+.|.+.+| .+....-......++.|+.|+++.| ....... .. ..
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~-~~ 236 (482)
T KOG1947|consen 159 GLANLESLSLSCCGSLLLDKILLRLLSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSP-LL-LL 236 (482)
T ss_pred HHHHHheeeeecccccccHHHHHHHHhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccch-hH-hh
Confidence 34555555555443332221 111234799999999999 3333222334677899999999874 2211111 00 01
Q ss_pred cccccCCCcceeecCCccCcceeeccccccccccccceEEEecCCCccccccchhHhhhcCCCceecccccccce
Q 001457 820 GEQAGLKRLRELVLVGLPKVLTIWKGNHSVVYLKTLKLMKVKDCGKLRYLFSRTLAEGLGNLEDLSILKCDLMEE 894 (1074)
Q Consensus 820 ~~~~~~~~L~~L~L~~~~~L~~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~ 894 (1074)
.....+++|+.|.+..+..+.+.-.... ...+++|+.|.+.+|..+++.....+...+++|++|++++|..+++
T Consensus 237 ~~~~~~~~L~~l~l~~~~~isd~~l~~l-~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d 310 (482)
T KOG1947|consen 237 LLLSICRKLKSLDLSGCGLVTDIGLSAL-ASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTD 310 (482)
T ss_pred hhhhhcCCcCccchhhhhccCchhHHHH-HhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchH
Confidence 1223478999999999876554321111 1238999999999999987765566778899999999999998844
No 147
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.51 E-value=1.9e-06 Score=97.54 Aligned_cols=125 Identities=22% Similarity=0.252 Sum_probs=98.0
Q ss_pred cCCCcEEeeccCCcccCCCC-CCCCCccEEEccCCCCCCCChhHHhcCCCccEEEecCCccCCCCC-CccCCccCCeeec
Q 001457 508 LQNCEKLSLMDGNVTALPDQ-PKCPRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSLAP-SLPCLEKLRSLHL 585 (1074)
Q Consensus 508 ~~~~~~L~l~~~~~~~l~~~-~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~Lr~L~L 585 (1074)
|.++...+..+|.+..+... .-++.|++|+|++|.+++.. .+..+++|+.|||+.|.+..+|. +-..+. |..|+|
T Consensus 163 Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~l 239 (1096)
T KOG1859|consen 163 WNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNL 239 (1096)
T ss_pred hhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh-heeeee
Confidence 45666667777776655543 34588999999999988765 46889999999999999998887 334444 999999
Q ss_pred cCCCCCCCccccCCCCccEEEeeCCCCcccC--ccccCCCCCCEEeCCCCcC
Q 001457 586 ENTHLNDASLIREFGELEVLILKGSRIVELP--NGIGTVSNLKLLDLSNNLF 635 (1074)
Q Consensus 586 ~~~~l~~~~~i~~l~~L~~L~L~~~~i~~lp--~~i~~L~~L~~L~l~~~~~ 635 (1074)
++|-++....|.+|.+|+.||+++|-+.... .-++.|..|+.|+|.+|+.
T Consensus 240 rnN~l~tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 240 RNNALTTLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred cccHHHhhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 9999988888999999999999999665432 2367788899999999874
No 148
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.50 E-value=0.0035 Score=72.76 Aligned_cols=179 Identities=13% Similarity=0.108 Sum_probs=101.8
Q ss_pred CCCcccCcchHHHHHHHHHHHhcCCCceeEEEEEcCCCCcHHHHHHHHHhh-cC---C------------------CCeE
Q 001457 156 TPEFVPLKSALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ-EI---P------------------FDKV 213 (1074)
Q Consensus 156 ~~~~~~~~~r~~~~~~l~~~l~~~~~~~~vi~I~G~gG~GKTtLa~~v~~~-~~---~------------------F~~~ 213 (1074)
+..+..+.|.+..+..+.+++..+. -.+.+.++|+.|+||||+|+.+... .. . |...
T Consensus 12 P~~f~diiGq~~i~~~L~~~i~~~~-i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~ 90 (486)
T PRK14953 12 PKFFKEVIGQEIVVRILKNAVKLQR-VSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDL 90 (486)
T ss_pred CCcHHHccChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcE
Confidence 3445556688888888888887654 1345678999999999999998776 11 0 1111
Q ss_pred EEEEecCCcCHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHH----ccCeEEEEEcCcccc--ccccccccCCCCCCCC
Q 001457 214 IFVRVTQTPDVKRVQDEIARFLNTELEGDVEVLRAAFLSERLK----RQKRVLIILDDLWGK--LDLAVVGIPYGEEHKG 287 (1074)
Q Consensus 214 ~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~~~~~~~~~~~g 287 (1074)
+++..+....+ +....+.+... .+++-++|+|++..- ...+.+...+......
T Consensus 91 ~eidaas~~gv---------------------d~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~ 149 (486)
T PRK14953 91 IEIDAASNRGI---------------------DDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPR 149 (486)
T ss_pred EEEeCccCCCH---------------------HHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCC
Confidence 22221111111 11112222221 356779999998743 3334443333322334
Q ss_pred eEEEEe-cCChhHHhh-ccCCCeEeCCCCCHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhCCChHHHHHH
Q 001457 288 CKIILT-SRFKEVCDE-MESTNYVQVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLPNAIVII 357 (1074)
Q Consensus 288 s~iivT-TR~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 357 (1074)
..+|++ |+...+... ......+.+.+++.++-...+.+.+.... ..-..+.+..|++.++|-+-.+..+
T Consensus 150 ~v~Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~eg-i~id~~al~~La~~s~G~lr~al~~ 220 (486)
T PRK14953 150 TIFILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEK-IEYEEKALDLLAQASEGGMRDAASL 220 (486)
T ss_pred eEEEEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 555554 444444322 22235789999999998888877654111 1223466777888899876544433
No 149
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.50 E-value=0.0011 Score=81.75 Aligned_cols=155 Identities=16% Similarity=0.228 Sum_probs=88.2
Q ss_pred CCcccCcchHHHHHHHHHHHhcCCCceeEEEEEcCCCCcHHHHHHHHHhh--cCC-----CCeEEEEEecCCcCHHHHHH
Q 001457 157 PEFVPLKSALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ--EIP-----FDKVIFVRVTQTPDVKRVQD 229 (1074)
Q Consensus 157 ~~~~~~~~r~~~~~~l~~~l~~~~~~~~vi~I~G~gG~GKTtLa~~v~~~--~~~-----F~~~~wv~vs~~~~~~~~~~ 229 (1074)
..+.++.||+++++.++..|.... ..-+.++|++|+|||++|+.+.+. ... .+..+|. + +...+..
T Consensus 179 ~~l~~~igr~~ei~~~~~~L~~~~--~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~-~----~~~~l~a 251 (731)
T TIGR02639 179 GKIDPLIGREDELERTIQVLCRRK--KNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYS-L----DMGSLLA 251 (731)
T ss_pred CCCCcccCcHHHHHHHHHHHhcCC--CCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEE-e----cHHHHhh
Confidence 445567899999999998887665 445679999999999999999987 221 1344442 1 1111110
Q ss_pred HHHHHhccCCCcchHHHHHHHHHHHHHccCeEEEEEcCccccc----------cccccccCCCCCCCC-eEEEEecCChh
Q 001457 230 EIARFLNTELEGDVEVLRAAFLSERLKRQKRVLIILDDLWGKL----------DLAVVGIPYGEEHKG-CKIILTSRFKE 298 (1074)
Q Consensus 230 ~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~----------~~~~~~~~~~~~~~g-s~iivTTR~~~ 298 (1074)
+....+ .-+.....+.+.+...++.+|++|++..-. +...+..+.. .+| -++|-+|..++
T Consensus 252 ------~~~~~g-~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l--~~g~i~~IgaTt~~e 322 (731)
T TIGR02639 252 ------GTKYRG-DFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPAL--SSGKLRCIGSTTYEE 322 (731)
T ss_pred ------hccccc-hHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHH--hCCCeEEEEecCHHH
Confidence 000011 112333444444443568999999987321 1111221211 223 34555554322
Q ss_pred HH------hhc-cCCCeEeCCCCCHHHHHHHHHHhc
Q 001457 299 VC------DEM-ESTNYVQVEELTDEDRLILFKKKA 327 (1074)
Q Consensus 299 v~------~~~-~~~~~~~l~~L~~~~~~~lf~~~a 327 (1074)
.. ... ..-..++++.++.++..+++....
T Consensus 323 ~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 323 YKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred HHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 21 111 112478999999999999998654
No 150
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.49 E-value=0.0015 Score=81.21 Aligned_cols=177 Identities=15% Similarity=0.212 Sum_probs=98.7
Q ss_pred CCCcccCcchHHHHHHHHHHHhcCCCceeEEEEEcCCCCcHHHHHHHHHhh--cCC-----CCeEEE-EEecCCcCHHHH
Q 001457 156 TPEFVPLKSALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ--EIP-----FDKVIF-VRVTQTPDVKRV 227 (1074)
Q Consensus 156 ~~~~~~~~~r~~~~~~l~~~l~~~~~~~~vi~I~G~gG~GKTtLa~~v~~~--~~~-----F~~~~w-v~vs~~~~~~~~ 227 (1074)
+..+.++.||++++..++..|.... ..-+.++|.+|+||||+|+.+... ... .+..+| +.++.-.
T Consensus 183 ~~~ld~~iGr~~ei~~~i~~l~r~~--~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~----- 255 (852)
T TIGR03345 183 EGKIDPVLGRDDEIRQMIDILLRRR--QNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQ----- 255 (852)
T ss_pred CCCCCcccCCHHHHHHHHHHHhcCC--cCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhh-----
Confidence 3445567889999999999887665 445569999999999999999987 221 123333 2222100
Q ss_pred HHHHHHHhccCCCcchHHHHHHHHHHHHH-ccCeEEEEEcCccccc-------ccc--ccccCCCCCCCC-eEEEEecCC
Q 001457 228 QDEIARFLNTELEGDVEVLRAAFLSERLK-RQKRVLIILDDLWGKL-------DLA--VVGIPYGEEHKG-CKIILTSRF 296 (1074)
Q Consensus 228 ~~~i~~~l~~~~~~~~~~~~~~~l~~~l~-~~k~~LlVlDdv~~~~-------~~~--~~~~~~~~~~~g-s~iivTTR~ 296 (1074)
.+....+.- ......+.+... .+++.+|++|++..-. .-+ .+..|.. .+| -++|-||..
T Consensus 256 -------ag~~~~ge~-e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l--~~G~l~~IgaTT~ 325 (852)
T TIGR03345 256 -------AGASVKGEF-ENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPAL--ARGELRTIAATTW 325 (852)
T ss_pred -------cccccchHH-HHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHh--hCCCeEEEEecCH
Confidence 000001111 122222333332 3578999999986431 111 1222221 233 466666665
Q ss_pred hhHHhhc-------cCCCeEeCCCCCHHHHHHHHHHhcC---CCCCCchhHHHHHHHHHHhCC
Q 001457 297 KEVCDEM-------ESTNYVQVEELTDEDRLILFKKKAG---LPEGTKAFDRAAEEVVRQCGK 349 (1074)
Q Consensus 297 ~~v~~~~-------~~~~~~~l~~L~~~~~~~lf~~~a~---~~~~~~~~~~~~~~i~~~c~g 349 (1074)
.+....+ ..-..+.+++++.++..+++..... ......-..+....+++.+.+
T Consensus 326 ~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~r 388 (852)
T TIGR03345 326 AEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHR 388 (852)
T ss_pred HHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHccc
Confidence 3321111 1225899999999999999755443 111112234566667777755
No 151
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.49 E-value=0.00088 Score=77.13 Aligned_cols=162 Identities=17% Similarity=0.205 Sum_probs=89.1
Q ss_pred CCCCcccCcchHHHHHHHHHHHhc----C-------CCceeEEEEEcCCCCcHHHHHHHHHhh-cCC-----CCeEEEEE
Q 001457 155 PTPEFVPLKSALEVIKSVMKLLKD----N-------SISINIIGVYGSGGIGKTTLMKQVMKQ-EIP-----FDKVIFVR 217 (1074)
Q Consensus 155 ~~~~~~~~~~r~~~~~~l~~~l~~----~-------~~~~~vi~I~G~gG~GKTtLa~~v~~~-~~~-----F~~~~wv~ 217 (1074)
|...+..+.|.+..++++.+.+.- . -...+-|.++|++|+|||++|+.+++. ... +....|++
T Consensus 177 p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~ 256 (512)
T TIGR03689 177 PDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLN 256 (512)
T ss_pred CCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEe
Confidence 333444455677777766665421 0 012456899999999999999999998 333 22345555
Q ss_pred ecCCcCHHHHHHHHHHHhccCCCcchHH---HHHHHHHHHHHccCeEEEEEcCccccc---------cc-----cccccC
Q 001457 218 VTQTPDVKRVQDEIARFLNTELEGDVEV---LRAAFLSERLKRQKRVLIILDDLWGKL---------DL-----AVVGIP 280 (1074)
Q Consensus 218 vs~~~~~~~~~~~i~~~l~~~~~~~~~~---~~~~~l~~~l~~~k~~LlVlDdv~~~~---------~~-----~~~~~~ 280 (1074)
+.... +.. . ..+..+. ......++....+++++|++|+++... +. ..+...
T Consensus 257 v~~~e----Ll~----k----yvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~ 324 (512)
T TIGR03689 257 IKGPE----LLN----K----YVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSE 324 (512)
T ss_pred ccchh----hcc----c----ccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHH
Confidence 54321 110 0 0011111 111222222223578999999997420 11 122111
Q ss_pred CC--CCCCCeEEEEecCChhHHh-hc----cCCCeEeCCCCCHHHHHHHHHHhcC
Q 001457 281 YG--EEHKGCKIILTSRFKEVCD-EM----ESTNYVQVEELTDEDRLILFKKKAG 328 (1074)
Q Consensus 281 ~~--~~~~gs~iivTTR~~~v~~-~~----~~~~~~~l~~L~~~~~~~lf~~~a~ 328 (1074)
+. ....+..||.||...+... .+ .-+..++++..+.++..++|..+..
T Consensus 325 LDgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~ 379 (512)
T TIGR03689 325 LDGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLT 379 (512)
T ss_pred hcccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhh
Confidence 11 1123455666665544321 11 2235689999999999999998875
No 152
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.49 E-value=2e-05 Score=82.48 Aligned_cols=130 Identities=22% Similarity=0.361 Sum_probs=60.0
Q ss_pred CCCCccEEEccCCCCCCCC----hhHHhcCCCccEEEecCCccCCC--------------CCCccCCccCCeeeccCCCC
Q 001457 529 KCPRLTTLFLQNNPFADIP----NAFFEHTREIKNLDLSSTNISSL--------------APSLPCLEKLRSLHLENTHL 590 (1074)
Q Consensus 529 ~~~~Lr~L~l~~~~~~~~~----~~~~~~l~~L~~L~l~~~~~~~l--------------p~~i~~l~~Lr~L~L~~~~l 590 (1074)
.+++|++|+|+.|-+..-. ...++.+..|+.|.|.+|.+... ..-+..-+.||++...+|++
T Consensus 90 ~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrl 169 (382)
T KOG1909|consen 90 GCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRL 169 (382)
T ss_pred cCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccc
Confidence 4445555555555432211 11234455555555555544311 11223344566666666655
Q ss_pred CC-C-----ccccCCCCccEEEeeCCCCc-----ccCccccCCCCCCEEeCCCCcCCCCcC---hhhhcCCCCcCEEEcc
Q 001457 591 ND-A-----SLIREFGELEVLILKGSRIV-----ELPNGIGTVSNLKLLDLSNNLFLQVIP---PNVISKLSQLEELYVG 656 (1074)
Q Consensus 591 ~~-~-----~~i~~l~~L~~L~L~~~~i~-----~lp~~i~~L~~L~~L~l~~~~~~~~~p---~~~i~~L~~L~~L~l~ 656 (1074)
.+ + ..+...+.|+.+.+..|.|. -+-..+..+++|+.||+.+|.+...-. ...+..+++|++|+++
T Consensus 170 en~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~ 249 (382)
T KOG1909|consen 170 ENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLG 249 (382)
T ss_pred ccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccc
Confidence 44 1 22334455666666555443 122334555666666666654432210 0114445556666655
Q ss_pred CC
Q 001457 657 NS 658 (1074)
Q Consensus 657 ~~ 658 (1074)
+|
T Consensus 250 dc 251 (382)
T KOG1909|consen 250 DC 251 (382)
T ss_pred cc
Confidence 55
No 153
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.46 E-value=0.00093 Score=75.74 Aligned_cols=134 Identities=16% Similarity=0.187 Sum_probs=84.8
Q ss_pred hHHHHHHHHHHHhcCCCceeEEEEEcCCCCcHHHHHHHHHhh-cCCCCeEEEEEecCCcCHHHHHHHHHHHhccCCCcch
Q 001457 165 ALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKRVQDEIARFLNTELEGDV 243 (1074)
Q Consensus 165 r~~~~~~l~~~l~~~~~~~~vi~I~G~gG~GKTtLa~~v~~~-~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~ 243 (1074)
+...+.++++.+.... . ++.|.|+-++||||+++.+... ... .++++.-+......-+.+..
T Consensus 22 ~~~~~~~l~~~~~~~~--~-i~~i~GpR~~GKTtll~~l~~~~~~~---~iy~~~~d~~~~~~~l~d~~----------- 84 (398)
T COG1373 22 RRKLLPRLIKKLDLRP--F-IILILGPRQVGKTTLLKLLIKGLLEE---IIYINFDDLRLDRIELLDLL----------- 84 (398)
T ss_pred HHhhhHHHHhhcccCC--c-EEEEECCccccHHHHHHHHHhhCCcc---eEEEEecchhcchhhHHHHH-----------
Confidence 4444555555554443 2 9999999999999999777666 333 56665433221111111111
Q ss_pred HHHHHHHHHHHHHccCeEEEEEcCccccccccccccCCCCCCCCeEEEEecCChhH-----Hhhc-cCCCeEeCCCCCHH
Q 001457 244 EVLRAAFLSERLKRQKRVLIILDDLWGKLDLAVVGIPYGEEHKGCKIILTSRFKEV-----CDEM-ESTNYVQVEELTDE 317 (1074)
Q Consensus 244 ~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~~~~~~~~~~~gs~iivTTR~~~v-----~~~~-~~~~~~~l~~L~~~ 317 (1074)
..+.+... .++..|+||.|.....|+.....+.+..+. +|++|+-+... +... |....+++.|||..
T Consensus 85 -----~~~~~~~~-~~~~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~ 157 (398)
T COG1373 85 -----RAYIELKE-REKSYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFR 157 (398)
T ss_pred -----HHHHHhhc-cCCceEEEecccCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHH
Confidence 11111111 267899999999999998776666665555 89999877665 2222 23357899999999
Q ss_pred HHHHH
Q 001457 318 DRLIL 322 (1074)
Q Consensus 318 ~~~~l 322 (1074)
|...+
T Consensus 158 Efl~~ 162 (398)
T COG1373 158 EFLKL 162 (398)
T ss_pred HHHhh
Confidence 98764
No 154
>PRK10536 hypothetical protein; Provisional
Probab=97.46 E-value=0.00087 Score=69.20 Aligned_cols=55 Identities=20% Similarity=0.305 Sum_probs=40.3
Q ss_pred CCCcccCcchHHHHHHHHHHHhcCCCceeEEEEEcCCCCcHHHHHHHHHhh---cCCCCeEE
Q 001457 156 TPEFVPLKSALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ---EIPFDKVI 214 (1074)
Q Consensus 156 ~~~~~~~~~r~~~~~~l~~~l~~~~~~~~vi~I~G~gG~GKTtLa~~v~~~---~~~F~~~~ 214 (1074)
..++.++.++......++.++.+. .+|.+.|.+|+|||+||..+..+ .+.|+.++
T Consensus 51 ~~~~~~i~p~n~~Q~~~l~al~~~----~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIi 108 (262)
T PRK10536 51 SRDTSPILARNEAQAHYLKAIESK----QLIFATGEAGCGKTWISAAKAAEALIHKDVDRII 108 (262)
T ss_pred hcCCccccCCCHHHHHHHHHHhcC----CeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEE
Confidence 334445667777777888887653 39999999999999999998875 34444333
No 155
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.46 E-value=0.0039 Score=71.95 Aligned_cols=182 Identities=14% Similarity=0.126 Sum_probs=101.0
Q ss_pred CCcccCcchHHHHHHHHHHHhcCCCceeEEEEEcCCCCcHHHHHHHHHhh--cCC--CC---e--------------EEE
Q 001457 157 PEFVPLKSALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ--EIP--FD---K--------------VIF 215 (1074)
Q Consensus 157 ~~~~~~~~r~~~~~~l~~~l~~~~~~~~vi~I~G~gG~GKTtLa~~v~~~--~~~--F~---~--------------~~w 215 (1074)
..+..+.|.+..++.+.+++..+. -...+.++|+.|+||||+|+.+.+. ... -+ | .-|
T Consensus 14 ~~~~diiGq~~~v~~L~~~i~~~~-i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d~ 92 (451)
T PRK06305 14 QTFSEILGQDAVVAVLKNALRFNR-AAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLDV 92 (451)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCC-CceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCce
Confidence 344456677888888888887654 1356789999999999999998876 110 00 0 012
Q ss_pred EEecC--CcCHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHccCeEEEEEcCcccc--ccccccccCCCCCCCCeEEE
Q 001457 216 VRVTQ--TPDVKRVQDEIARFLNTELEGDVEVLRAAFLSERLKRQKRVLIILDDLWGK--LDLAVVGIPYGEEHKGCKII 291 (1074)
Q Consensus 216 v~vs~--~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~--~~~~~~~~~~~~~~~gs~ii 291 (1074)
+.+.. ...+.. .+++.+. +...-..+++-++|+|++..- ...+.+...+.....+..+|
T Consensus 93 ~~i~g~~~~gid~-ir~i~~~----------------l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~I 155 (451)
T PRK06305 93 LEIDGASHRGIED-IRQINET----------------VLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFF 155 (451)
T ss_pred EEeeccccCCHHH-HHHHHHH----------------HHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEE
Confidence 22211 111111 1111111 110001256778999998643 23333333333323355666
Q ss_pred Eec-CChhHHhh-ccCCCeEeCCCCCHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhCCCh-HHHHHH
Q 001457 292 LTS-RFKEVCDE-MESTNYVQVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLP-NAIVII 357 (1074)
Q Consensus 292 vTT-R~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~i~~~c~glP-Lai~~~ 357 (1074)
++| +...+... ......++++++++++....+.+.+... ...-..+.+..|++.++|-+ .|+..+
T Consensus 156 l~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~e-g~~i~~~al~~L~~~s~gdlr~a~~~L 223 (451)
T PRK06305 156 LATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQE-GIETSREALLPIARAAQGSLRDAESLY 223 (451)
T ss_pred EEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 655 33333322 2233578999999999888887765421 11223567788999999966 344433
No 156
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.45 E-value=0.0009 Score=71.28 Aligned_cols=161 Identities=17% Similarity=0.269 Sum_probs=101.4
Q ss_pred CcchHHHHHHHHHHHhcCCCc-eeEEEEEcCCCCcHHHHHHHHHhh-cCCCCeEEEEEecCCcCHHHHHHHHHHHhc-cC
Q 001457 162 LKSALEVIKSVMKLLKDNSIS-INIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKRVQDEIARFLN-TE 238 (1074)
Q Consensus 162 ~~~r~~~~~~l~~~l~~~~~~-~~vi~I~G~gG~GKTtLa~~v~~~-~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~-~~ 238 (1074)
+.+|+..+..+...+.+++.. ..+|-|+|-+|.|||.+.+++++. ..+ .+|+++-+.++.+-+...|+.+.+ .+
T Consensus 8 v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~---~vw~n~~ecft~~~lle~IL~~~~~~d 84 (438)
T KOG2543|consen 8 VPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNLE---NVWLNCVECFTYAILLEKILNKSQLAD 84 (438)
T ss_pred ccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcCCc---ceeeehHHhccHHHHHHHHHHHhccCC
Confidence 457888888888877666543 456699999999999999999988 333 589999999999999999999985 33
Q ss_pred CCcchHH-------HHHHHHHH--HHH-ccCeEEEEEcCccccccccccccC----CC--CCCCCeEEEEecCCh--hH-
Q 001457 239 LEGDVEV-------LRAAFLSE--RLK-RQKRVLIILDDLWGKLDLAVVGIP----YG--EEHKGCKIILTSRFK--EV- 299 (1074)
Q Consensus 239 ~~~~~~~-------~~~~~l~~--~l~-~~k~~LlVlDdv~~~~~~~~~~~~----~~--~~~~gs~iivTTR~~--~v- 299 (1074)
.++.... .....+.+ ... .++.++||||+++.-.+.+.+..+ +. -..+.. +|+++-.. ..
T Consensus 85 ~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i-~iils~~~~e~~y 163 (438)
T KOG2543|consen 85 KDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTI-VIILSAPSCEKQY 163 (438)
T ss_pred CchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCce-EEEEeccccHHHh
Confidence 2222111 11222222 111 246899999999876544432110 00 111223 33333322 22
Q ss_pred HhhccCCC--eEeCCCCCHHHHHHHHHHh
Q 001457 300 CDEMESTN--YVQVEELTDEDRLILFKKK 326 (1074)
Q Consensus 300 ~~~~~~~~--~~~l~~L~~~~~~~lf~~~ 326 (1074)
-..+++.. ++..+.-+.+|..+++.+.
T Consensus 164 ~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 164 LINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred hcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 12244443 4567788888888888554
No 157
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.44 E-value=0.0025 Score=73.41 Aligned_cols=153 Identities=15% Similarity=0.240 Sum_probs=90.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhh--cCCCC-eEEEEEecCCcCHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHccC
Q 001457 183 INIIGVYGSGGIGKTTLMKQVMKQ--EIPFD-KVIFVRVTQTPDVKRVQDEIARFLNTELEGDVEVLRAAFLSERLKRQK 259 (1074)
Q Consensus 183 ~~vi~I~G~gG~GKTtLa~~v~~~--~~~F~-~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 259 (1074)
..-+.|+|.+|+|||+||+.+.+. +.+.+ .++|++. .++..++...+... ......+.+. .+
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~------~~f~~~~~~~~~~~--------~~~~f~~~~~-~~ 194 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS------EKFLNDLVDSMKEG--------KLNEFREKYR-KK 194 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH------HHHHHHHHHHHhcc--------cHHHHHHHHH-hc
Confidence 345999999999999999999998 33333 4567653 34555555554321 1112333332 24
Q ss_pred eEEEEEcCcccc---ccc-cccccCCCC-CCCCeEEEEecC-ChhH--------HhhccCCCeEeCCCCCHHHHHHHHHH
Q 001457 260 RVLIILDDLWGK---LDL-AVVGIPYGE-EHKGCKIILTSR-FKEV--------CDEMESTNYVQVEELTDEDRLILFKK 325 (1074)
Q Consensus 260 ~~LlVlDdv~~~---~~~-~~~~~~~~~-~~~gs~iivTTR-~~~v--------~~~~~~~~~~~l~~L~~~~~~~lf~~ 325 (1074)
.-+|++||+... ..+ +.+...+.. ...|..||+||. ...- ...+....++++++.+.+.-.+++.+
T Consensus 195 ~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~ 274 (440)
T PRK14088 195 VDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARK 274 (440)
T ss_pred CCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHH
Confidence 568999999743 111 112111110 112457888875 3221 12233345789999999999999988
Q ss_pred hcCCCCCCchhHHHHHHHHHHhCCCh
Q 001457 326 KAGLPEGTKAFDRAAEEVVRQCGKLP 351 (1074)
Q Consensus 326 ~a~~~~~~~~~~~~~~~i~~~c~glP 351 (1074)
++.... ..--+++...|++.+.|--
T Consensus 275 ~~~~~~-~~l~~ev~~~Ia~~~~~~~ 299 (440)
T PRK14088 275 MLEIEH-GELPEEVLNFVAENVDDNL 299 (440)
T ss_pred HHHhcC-CCCCHHHHHHHHhccccCH
Confidence 875211 1223567888888887743
No 158
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.43 E-value=0.00096 Score=75.72 Aligned_cols=156 Identities=15% Similarity=0.205 Sum_probs=85.7
Q ss_pred CCCCcccCcchHHHHHHHHHHHh----cC-------CCceeEEEEEcCCCCcHHHHHHHHHhh-cCCCCeEEEEEecCCc
Q 001457 155 PTPEFVPLKSALEVIKSVMKLLK----DN-------SISINIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTP 222 (1074)
Q Consensus 155 ~~~~~~~~~~r~~~~~~l~~~l~----~~-------~~~~~vi~I~G~gG~GKTtLa~~v~~~-~~~F~~~~wv~vs~~~ 222 (1074)
|...+..+.|.+..++++-+.+. .. -...+-|.++|++|+|||++|+.+++. ...| +.+...
T Consensus 178 p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~f-----i~V~~s- 251 (438)
T PTZ00361 178 PLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATF-----LRVVGS- 251 (438)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCE-----EEEecc-
Confidence 44444445566666666555442 11 012456889999999999999999998 5544 222211
Q ss_pred CHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHccCeEEEEEcCcccccc----------------ccccccCCC--CC
Q 001457 223 DVKRVQDEIARFLNTELEGDVEVLRAAFLSERLKRQKRVLIILDDLWGKLD----------------LAVVGIPYG--EE 284 (1074)
Q Consensus 223 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~----------------~~~~~~~~~--~~ 284 (1074)
.+.. .. .+.. ......+.+....+.+.+|++|+++.... +..+...+. ..
T Consensus 252 ---eL~~----k~----~Ge~-~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~ 319 (438)
T PTZ00361 252 ---ELIQ----KY----LGDG-PKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDS 319 (438)
T ss_pred ---hhhh----hh----cchH-HHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcc
Confidence 1111 00 0111 11122222223346788999999763210 001111111 11
Q ss_pred CCCeEEEEecCChhHHhh-c----cCCCeEeCCCCCHHHHHHHHHHhcC
Q 001457 285 HKGCKIILTSRFKEVCDE-M----ESTNYVQVEELTDEDRLILFKKKAG 328 (1074)
Q Consensus 285 ~~gs~iivTTR~~~v~~~-~----~~~~~~~l~~L~~~~~~~lf~~~a~ 328 (1074)
..+.+||+||...+.... + ..+..+++...+.++..++|..++.
T Consensus 320 ~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~ 368 (438)
T PTZ00361 320 RGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTS 368 (438)
T ss_pred cCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHh
Confidence 235678888876554322 1 1235789999999999999987765
No 159
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.43 E-value=0.00044 Score=66.53 Aligned_cols=89 Identities=22% Similarity=0.248 Sum_probs=50.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh-cCCCCeEEEEEecCCcCHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHccCeEE
Q 001457 184 NIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKRVQDEIARFLNTELEGDVEVLRAAFLSERLKRQKRVL 262 (1074)
Q Consensus 184 ~vi~I~G~gG~GKTtLa~~v~~~-~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~L 262 (1074)
..+.|+|++|+||||+|+.+... ......+++++.+........... ...................+.+..+..+..+
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 81 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLL-LIIVGGKKASGSGELRLRLALALARKLKPDV 81 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHH-hhhhhccCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 57899999999999999999988 333334566655543322222211 1111111111222233334444444333499
Q ss_pred EEEcCcccccc
Q 001457 263 IILDDLWGKLD 273 (1074)
Q Consensus 263 lVlDdv~~~~~ 273 (1074)
|++|+++....
T Consensus 82 iiiDei~~~~~ 92 (148)
T smart00382 82 LILDEITSLLD 92 (148)
T ss_pred EEEECCcccCC
Confidence 99999987533
No 160
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.43 E-value=0.0047 Score=72.17 Aligned_cols=151 Identities=17% Similarity=0.219 Sum_probs=90.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh-cCCC--CeEEEEEecCCcCHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHccCe
Q 001457 184 NIIGVYGSGGIGKTTLMKQVMKQ-EIPF--DKVIFVRVTQTPDVKRVQDEIARFLNTELEGDVEVLRAAFLSERLKRQKR 260 (1074)
Q Consensus 184 ~vi~I~G~gG~GKTtLa~~v~~~-~~~F--~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~ 260 (1074)
..+.|+|..|+|||.|++.+.+. ...+ ..++|++. .++..++...+.. .....+++.+. +-
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yita------eef~~el~~al~~--------~~~~~f~~~y~--~~ 378 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSS------EEFTNEFINSIRD--------GKGDSFRRRYR--EM 378 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeH------HHHHHHHHHHHHh--------ccHHHHHHHhh--cC
Confidence 45899999999999999999998 3322 34556653 3344444433321 11122334443 34
Q ss_pred EEEEEcCcccc---cccc-ccccCCCC-CCCCeEEEEecCCh---------hHHhhccCCCeEeCCCCCHHHHHHHHHHh
Q 001457 261 VLIILDDLWGK---LDLA-VVGIPYGE-EHKGCKIILTSRFK---------EVCDEMESTNYVQVEELTDEDRLILFKKK 326 (1074)
Q Consensus 261 ~LlVlDdv~~~---~~~~-~~~~~~~~-~~~gs~iivTTR~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf~~~ 326 (1074)
=+||+||+... ..|. .+..-+.. ...|..|||||+.. .+...+...-+++++..+.+.-.+++.++
T Consensus 379 DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kk 458 (617)
T PRK14086 379 DILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKK 458 (617)
T ss_pred CEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHH
Confidence 57899999743 2222 12111111 12355688888752 22344455568999999999999999988
Q ss_pred cCCCCCCchhHHHHHHHHHHhCCCh
Q 001457 327 AGLPEGTKAFDRAAEEVVRQCGKLP 351 (1074)
Q Consensus 327 a~~~~~~~~~~~~~~~i~~~c~glP 351 (1074)
+... ...--++++.-|++.+.+..
T Consensus 459 a~~r-~l~l~~eVi~yLa~r~~rnv 482 (617)
T PRK14086 459 AVQE-QLNAPPEVLEFIASRISRNI 482 (617)
T ss_pred HHhc-CCCCCHHHHHHHHHhccCCH
Confidence 8622 12223577777777776543
No 161
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.42 E-value=0.0021 Score=80.37 Aligned_cols=154 Identities=17% Similarity=0.253 Sum_probs=88.8
Q ss_pred CcccCcchHHHHHHHHHHHhcCCCceeEEEEEcCCCCcHHHHHHHHHhh--cCCC-----CeEEEEEecCCcCHHHHHHH
Q 001457 158 EFVPLKSALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ--EIPF-----DKVIFVRVTQTPDVKRVQDE 230 (1074)
Q Consensus 158 ~~~~~~~r~~~~~~l~~~l~~~~~~~~vi~I~G~gG~GKTtLa~~v~~~--~~~F-----~~~~wv~vs~~~~~~~~~~~ 230 (1074)
.+.++.||+++++.+++.|.... ..-+.++|.+|+|||++|+.++.. ...- +..+|. + +...++.
T Consensus 177 ~~~~~igr~~ei~~~~~~L~r~~--~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~-l----~~~~l~a- 248 (821)
T CHL00095 177 NLDPVIGREKEIERVIQILGRRT--KNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT-L----DIGLLLA- 248 (821)
T ss_pred CCCCCCCcHHHHHHHHHHHcccc--cCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE-e----eHHHHhc-
Confidence 34557899999999999997665 345569999999999999999887 2111 344553 1 1111110
Q ss_pred HHHHhccCCCcchHHHHHHHHHHHHHccCeEEEEEcCccccc---------cccccccCCCCCCCCeEEEEecCChhHHh
Q 001457 231 IARFLNTELEGDVEVLRAAFLSERLKRQKRVLIILDDLWGKL---------DLAVVGIPYGEEHKGCKIILTSRFKEVCD 301 (1074)
Q Consensus 231 i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~---------~~~~~~~~~~~~~~gs~iivTTR~~~v~~ 301 (1074)
+....+. -+.....+.+.+...++.+|++|++..-. +...+..+.... ..-++|.+|..++...
T Consensus 249 -----g~~~~ge-~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~r-g~l~~IgaTt~~ey~~ 321 (821)
T CHL00095 249 -----GTKYRGE-FEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALAR-GELQCIGATTLDEYRK 321 (821)
T ss_pred -----cCCCccH-HHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhC-CCcEEEEeCCHHHHHH
Confidence 1111121 23344444444444578999999986321 111122221111 1245666665554321
Q ss_pred ------hc-cCCCeEeCCCCCHHHHHHHHHHh
Q 001457 302 ------EM-ESTNYVQVEELTDEDRLILFKKK 326 (1074)
Q Consensus 302 ------~~-~~~~~~~l~~L~~~~~~~lf~~~ 326 (1074)
.+ ....++.++..+.++...++...
T Consensus 322 ~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l 353 (821)
T CHL00095 322 HIEKDPALERRFQPVYVGEPSVEETIEILFGL 353 (821)
T ss_pred HHhcCHHHHhcceEEecCCCCHHHHHHHHHHH
Confidence 11 12256788999999988887644
No 162
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.41 E-value=0.0037 Score=74.71 Aligned_cols=195 Identities=14% Similarity=0.070 Sum_probs=104.8
Q ss_pred CCcccCcchHHHHHHHHHHHhcCCCceeEEEEEcCCCCcHHHHHHHHHhh--cCCCCeEEEEEecCCcCHHHHHHHHHHH
Q 001457 157 PEFVPLKSALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ--EIPFDKVIFVRVTQTPDVKRVQDEIARF 234 (1074)
Q Consensus 157 ~~~~~~~~r~~~~~~l~~~l~~~~~~~~vi~I~G~gG~GKTtLa~~v~~~--~~~F~~~~wv~vs~~~~~~~~~~~i~~~ 234 (1074)
..+..+.|.+..+..+..++..+. ..+.+.++|..|+||||+|+.+... ...++... ...+..-...+.+...
T Consensus 13 ~~f~~liGq~~i~~~L~~~l~~~r-l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~----~~~Cg~C~~C~~i~~g 87 (620)
T PRK14948 13 QRFDELVGQEAIATTLKNALISNR-IAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPT----PEPCGKCELCRAIAAG 87 (620)
T ss_pred CcHhhccChHHHHHHHHHHHHcCC-CCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCC----CCCCcccHHHHHHhcC
Confidence 444556677787888888777654 1357789999999999999999888 22211100 0111112222223222
Q ss_pred hccCC---C--cchHHHHHHHHHHHHH----ccCeEEEEEcCcccc--ccccccccCCCCCCCCeEEEE-ecCChhHHhh
Q 001457 235 LNTEL---E--GDVEVLRAAFLSERLK----RQKRVLIILDDLWGK--LDLAVVGIPYGEEHKGCKIIL-TSRFKEVCDE 302 (1074)
Q Consensus 235 l~~~~---~--~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~~~~~~~~~~~gs~iiv-TTR~~~v~~~ 302 (1074)
...+. + .....+.+..+.+... .+++-++|+|++..- ..++.+...+........+|+ |+....+...
T Consensus 88 ~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llpT 167 (620)
T PRK14948 88 NALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPT 167 (620)
T ss_pred CCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhHH
Confidence 11110 0 0000111222222221 245668999998753 344444333332223455554 4443334332
Q ss_pred c-cCCCeEeCCCCCHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhCCChHHHHHH
Q 001457 303 M-ESTNYVQVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLPNAIVII 357 (1074)
Q Consensus 303 ~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 357 (1074)
+ .....+++..++.++....+.+.+.... ..--.+.+..|++.++|-+..+..+
T Consensus 168 IrSRc~~~~f~~l~~~ei~~~L~~ia~keg-i~is~~al~~La~~s~G~lr~A~~l 222 (620)
T PRK14948 168 IISRCQRFDFRRIPLEAMVQHLSEIAEKES-IEIEPEALTLVAQRSQGGLRDAESL 222 (620)
T ss_pred HHhheeEEEecCCCHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 2 2235788889999988887776664211 1112356788999999987544433
No 163
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.38 E-value=0.00098 Score=76.46 Aligned_cols=150 Identities=15% Similarity=0.207 Sum_probs=86.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhh-cCCCCeEEEEEecCCcCHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHccCeE
Q 001457 183 INIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKRVQDEIARFLNTELEGDVEVLRAAFLSERLKRQKRV 261 (1074)
Q Consensus 183 ~~vi~I~G~gG~GKTtLa~~v~~~-~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~ 261 (1074)
..-+.|+|..|+|||+|++.+.+. ......+++++. ..+...+...+... ....+++.+ ...-
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~------~~f~~~~~~~l~~~--------~~~~f~~~~--~~~d 204 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRS------ELFTEHLVSAIRSG--------EMQRFRQFY--RNVD 204 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeH------HHHHHHHHHHHhcc--------hHHHHHHHc--ccCC
Confidence 356889999999999999999998 333334566652 33444444444311 112233333 2455
Q ss_pred EEEEcCcccccc--c--cccccCCCC-CCCCeEEEEecCCh---------hHHhhccCCCeEeCCCCCHHHHHHHHHHhc
Q 001457 262 LIILDDLWGKLD--L--AVVGIPYGE-EHKGCKIILTSRFK---------EVCDEMESTNYVQVEELTDEDRLILFKKKA 327 (1074)
Q Consensus 262 LlVlDdv~~~~~--~--~~~~~~~~~-~~~gs~iivTTR~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf~~~a 327 (1074)
++++||+..... + +.+...+.. ...|..||+||... .+...+.....+++++++.++-..++.+++
T Consensus 205 vLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~ 284 (445)
T PRK12422 205 ALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERKA 284 (445)
T ss_pred EEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHHH
Confidence 888999865321 1 122111110 01355788887542 122333344688999999999999998887
Q ss_pred CCCCCCchhHHHHHHHHHHhCC
Q 001457 328 GLPEGTKAFDRAAEEVVRQCGK 349 (1074)
Q Consensus 328 ~~~~~~~~~~~~~~~i~~~c~g 349 (1074)
.... ..--+++..-|++.+.|
T Consensus 285 ~~~~-~~l~~evl~~la~~~~~ 305 (445)
T PRK12422 285 EALS-IRIEETALDFLIEALSS 305 (445)
T ss_pred HHcC-CCCCHHHHHHHHHhcCC
Confidence 5221 12224556666666654
No 164
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.37 E-value=0.0041 Score=73.45 Aligned_cols=192 Identities=13% Similarity=0.091 Sum_probs=104.5
Q ss_pred CCCcccCcchHHHHHHHHHHHhcCCCceeEEEEEcCCCCcHHHHHHHHHhh--c-CCCCeEEEEEecCCcCHHHHHHHHH
Q 001457 156 TPEFVPLKSALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ--E-IPFDKVIFVRVTQTPDVKRVQDEIA 232 (1074)
Q Consensus 156 ~~~~~~~~~r~~~~~~l~~~l~~~~~~~~vi~I~G~gG~GKTtLa~~v~~~--~-~~F~~~~wv~vs~~~~~~~~~~~i~ 232 (1074)
+..+..+.|.+..++.+..++..+. -.+.+.++|+.|+||||+|+.+.+. . ..... ..+....+ .+.|.
T Consensus 12 P~~f~diiGqe~iv~~L~~~i~~~~-i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~---~pC~~C~~----C~~i~ 83 (563)
T PRK06647 12 PRDFNSLEGQDFVVETLKHSIESNK-IANAYIFSGPRGVGKTSSARAFARCLNCVNGPTP---MPCGECSS----CKSID 83 (563)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhhccccCCCC---CCCccchH----HHHHH
Confidence 3445556678888888888887654 2456889999999999999999887 1 11100 00000000 01111
Q ss_pred HHhccC---CCcc--hHHHHHHHHHHHHH----ccCeEEEEEcCcccc--ccccccccCCCCCCCCeEEEEec-CChhHH
Q 001457 233 RFLNTE---LEGD--VEVLRAAFLSERLK----RQKRVLIILDDLWGK--LDLAVVGIPYGEEHKGCKIILTS-RFKEVC 300 (1074)
Q Consensus 233 ~~l~~~---~~~~--~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~~~~~~~~~~~gs~iivTT-R~~~v~ 300 (1074)
..-..+ .++. ...+.+..+.+.+. .+++-++|+|++..- ..++.+...+......+.+|.+| ....+-
T Consensus 84 ~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~ 163 (563)
T PRK06647 84 NDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLP 163 (563)
T ss_pred cCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhH
Confidence 100000 0000 00111112221111 256668999998753 34555544444333456666655 334443
Q ss_pred hhc-cCCCeEeCCCCCHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhCCChHHHHH
Q 001457 301 DEM-ESTNYVQVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLPNAIVI 356 (1074)
Q Consensus 301 ~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~i~~~c~glPLai~~ 356 (1074)
... .....+++.+++.++-.+.+.+.+... ..+-..+.+..|++.++|-+-.+..
T Consensus 164 ~tI~SRc~~~~f~~l~~~el~~~L~~i~~~e-gi~id~eAl~lLa~~s~GdlR~als 219 (563)
T PRK06647 164 ATIKSRCQHFNFRLLSLEKIYNMLKKVCLED-QIKYEDEALKWIAYKSTGSVRDAYT 219 (563)
T ss_pred HHHHHhceEEEecCCCHHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHcCCCHHHHHH
Confidence 222 223578999999999888887766421 1223356777899999997754433
No 165
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.34 E-value=0.014 Score=60.09 Aligned_cols=186 Identities=16% Similarity=0.131 Sum_probs=91.3
Q ss_pred CcccCcchHHHHHHHH---HHHhcCCCceeEEEEEcCCCCcHHHHHHHHHhh-cCCCCeEEEEEecCCcCHHHHHHHHHH
Q 001457 158 EFVPLKSALEVIKSVM---KLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKRVQDEIAR 233 (1074)
Q Consensus 158 ~~~~~~~r~~~~~~l~---~~l~~~~~~~~vi~I~G~gG~GKTtLa~~v~~~-~~~F~~~~wv~vs~~~~~~~~~~~i~~ 233 (1074)
.+..+.|.++.++++- +.-...+..+..|.++|++|.||||||.-+.+. .-.+. ++-........-+-.|+.
T Consensus 24 ~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k----~tsGp~leK~gDlaaiLt 99 (332)
T COG2255 24 TLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVNLK----ITSGPALEKPGDLAAILT 99 (332)
T ss_pred cHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeE----ecccccccChhhHHHHHh
Confidence 3334555555444433 333334445889999999999999999999998 43332 111111111111111222
Q ss_pred HhccCC----Ccc--hHHHHHHHHHHHHHccCeEEEEEcCccccccccccccCCCCCCCCeEEEEecCChhHHhhccCC-
Q 001457 234 FLNTEL----EGD--VEVLRAAFLSERLKRQKRVLIILDDLWGKLDLAVVGIPYGEEHKGCKIILTSRFKEVCDEMEST- 306 (1074)
Q Consensus 234 ~l~~~~----~~~--~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~~~~~~~~~~~gs~iivTTR~~~v~~~~~~~- 306 (1074)
.+.... ++- ......+.+.-.+. +-+.=|++.-= ..-..+...+++ =+=|=.|||.-.+.......
T Consensus 100 ~Le~~DVLFIDEIHrl~~~vEE~LYpaME-Df~lDI~IG~g---p~Arsv~ldLpp---FTLIGATTr~G~lt~PLrdRF 172 (332)
T COG2255 100 NLEEGDVLFIDEIHRLSPAVEEVLYPAME-DFRLDIIIGKG---PAARSIRLDLPP---FTLIGATTRAGMLTNPLRDRF 172 (332)
T ss_pred cCCcCCeEEEehhhhcChhHHHHhhhhhh-heeEEEEEccC---CccceEeccCCC---eeEeeeccccccccchhHHhc
Confidence 211100 000 00000011111111 12221222110 011112222222 23455799976664333222
Q ss_pred -CeEeCCCCCHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhCCChHHHH
Q 001457 307 -NYVQVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLPNAIV 355 (1074)
Q Consensus 307 -~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~i~~~c~glPLai~ 355 (1074)
.+.+++.-+.+|-.++..+.|. .-...-.++.+.+|+++..|-|--+.
T Consensus 173 Gi~~rlefY~~~eL~~Iv~r~a~-~l~i~i~~~~a~eIA~rSRGTPRIAn 221 (332)
T COG2255 173 GIIQRLEFYTVEELEEIVKRSAK-ILGIEIDEEAALEIARRSRGTPRIAN 221 (332)
T ss_pred CCeeeeecCCHHHHHHHHHHHHH-HhCCCCChHHHHHHHHhccCCcHHHH
Confidence 3678899999999999988875 11122335678999999999995433
No 166
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.32 E-value=0.00084 Score=63.64 Aligned_cols=21 Identities=38% Similarity=0.510 Sum_probs=19.9
Q ss_pred EEEEcCCCCcHHHHHHHHHhh
Q 001457 186 IGVYGSGGIGKTTLMKQVMKQ 206 (1074)
Q Consensus 186 i~I~G~gG~GKTtLa~~v~~~ 206 (1074)
|.|+|++|+||||+|+.+++.
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 579999999999999999998
No 167
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.30 E-value=0.0062 Score=66.96 Aligned_cols=95 Identities=11% Similarity=0.063 Sum_probs=58.4
Q ss_pred cCeEEEEEcCcccc--ccccccccCCCCCCCCeEEEEecCChhH-Hhh-ccCCCeEeCCCCCHHHHHHHHHHhcCCCCCC
Q 001457 258 QKRVLIILDDLWGK--LDLAVVGIPYGEEHKGCKIILTSRFKEV-CDE-MESTNYVQVEELTDEDRLILFKKKAGLPEGT 333 (1074)
Q Consensus 258 ~k~~LlVlDdv~~~--~~~~~~~~~~~~~~~gs~iivTTR~~~v-~~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~ 333 (1074)
+++-++|+|+++.- ...+.+...+-.-..++.+|+||.+.+. ... ......+.+.+++.+++.+.+.+....
T Consensus 105 ~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~~~---- 180 (328)
T PRK05707 105 GGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQALPE---- 180 (328)
T ss_pred CCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhccc----
Confidence 45555677998753 3333333222222346777777766543 322 233467999999999999888765421
Q ss_pred chhHHHHHHHHHHhCCChHHHHHH
Q 001457 334 KAFDRAAEEVVRQCGKLPNAIVII 357 (1074)
Q Consensus 334 ~~~~~~~~~i~~~c~glPLai~~~ 357 (1074)
...+.+..++..++|.|..+..+
T Consensus 181 -~~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 181 -SDERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred -CChHHHHHHHHHcCCCHHHHHHH
Confidence 12344567789999999755544
No 168
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.29 E-value=2.8e-05 Score=70.01 Aligned_cols=109 Identities=20% Similarity=0.274 Sum_probs=80.5
Q ss_pred ccEEEccCCCCCCCChh--HHhcCCCccEEEecCCccCCCCCCccC-CccCCeeeccCCCCCC-CccccCCCCccEEEee
Q 001457 533 LTTLFLQNNPFADIPNA--FFEHTREIKNLDLSSTNISSLAPSLPC-LEKLRSLHLENTHLND-ASLIREFGELEVLILK 608 (1074)
Q Consensus 533 Lr~L~l~~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~lp~~i~~-l~~Lr~L~L~~~~l~~-~~~i~~l~~L~~L~L~ 608 (1074)
+..++|+.|.+-.+++. -..+..+|...++++|.+.++|+.+.. .+.+..|++.+|.|++ |..+..++.|+.|+++
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~ 108 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLR 108 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccc
Confidence 34455666654444432 234566788889999999988886654 4578888999998888 8888888888888888
Q ss_pred CCCCcccCccccCCCCCCEEeCCCCcCCCCcChh
Q 001457 609 GSRIVELPNGIGTVSNLKLLDLSNNLFLQVIPPN 642 (1074)
Q Consensus 609 ~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~ 642 (1074)
.|.+...|.-|..|.+|-.|+..++.. ..+|.+
T Consensus 109 ~N~l~~~p~vi~~L~~l~~Lds~~na~-~eid~d 141 (177)
T KOG4579|consen 109 FNPLNAEPRVIAPLIKLDMLDSPENAR-AEIDVD 141 (177)
T ss_pred cCccccchHHHHHHHhHHHhcCCCCcc-ccCcHH
Confidence 888888888888888888888877763 444443
No 169
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.28 E-value=0.0038 Score=70.46 Aligned_cols=149 Identities=15% Similarity=0.223 Sum_probs=81.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhh-cCCCCeEEEEEecCCcCHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHccCeE
Q 001457 183 INIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKRVQDEIARFLNTELEGDVEVLRAAFLSERLKRQKRV 261 (1074)
Q Consensus 183 ~~vi~I~G~gG~GKTtLa~~v~~~-~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~ 261 (1074)
.+-|.++|++|+|||++|+.+.+. ...| +.+.. ..+... ..+ .. ......+........+.
T Consensus 179 pkgvLL~GppGTGKT~LAkalA~~l~~~f-----i~i~~----s~l~~k---~~g-----e~-~~~lr~lf~~A~~~~P~ 240 (398)
T PTZ00454 179 PRGVLLYGPPGTGKTMLAKAVAHHTTATF-----IRVVG----SEFVQK---YLG-----EG-PRMVRDVFRLARENAPS 240 (398)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhcCCCE-----EEEeh----HHHHHH---hcc-----hh-HHHHHHHHHHHHhcCCe
Confidence 567889999999999999999998 4443 22211 111111 111 11 11222233333346789
Q ss_pred EEEEcCccccc------------c----ccccccCCC--CCCCCeEEEEecCChhHHh-h-c---cCCCeEeCCCCCHHH
Q 001457 262 LIILDDLWGKL------------D----LAVVGIPYG--EEHKGCKIILTSRFKEVCD-E-M---ESTNYVQVEELTDED 318 (1074)
Q Consensus 262 LlVlDdv~~~~------------~----~~~~~~~~~--~~~~gs~iivTTR~~~v~~-~-~---~~~~~~~l~~L~~~~ 318 (1074)
+|++|+++... . +..+...+. ....+..||+||...+... . . .-+..+.++..+.++
T Consensus 241 ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~ 320 (398)
T PTZ00454 241 IIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQ 320 (398)
T ss_pred EEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHH
Confidence 99999976420 0 111111111 1224567888887655421 1 1 223568899999999
Q ss_pred HHHHHHHhcCCCCCCchhHHHHHHHHHHhCCCh
Q 001457 319 RLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLP 351 (1074)
Q Consensus 319 ~~~lf~~~a~~~~~~~~~~~~~~~i~~~c~glP 351 (1074)
...+|..+.......++ -...++++.+.|.-
T Consensus 321 R~~Il~~~~~~~~l~~d--vd~~~la~~t~g~s 351 (398)
T PTZ00454 321 KRLIFQTITSKMNLSEE--VDLEDFVSRPEKIS 351 (398)
T ss_pred HHHHHHHHHhcCCCCcc--cCHHHHHHHcCCCC
Confidence 88888776642211111 11345566666654
No 170
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.25 E-value=0.0077 Score=71.47 Aligned_cols=191 Identities=14% Similarity=0.073 Sum_probs=102.5
Q ss_pred CCCcccCcchHHHHHHHHHHHhcCCCceeEEEEEcCCCCcHHHHHHHHHhh--cCCCCeEEEEEecCCcCHHHHHHHHHH
Q 001457 156 TPEFVPLKSALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ--EIPFDKVIFVRVTQTPDVKRVQDEIAR 233 (1074)
Q Consensus 156 ~~~~~~~~~r~~~~~~l~~~l~~~~~~~~vi~I~G~gG~GKTtLa~~v~~~--~~~F~~~~wv~vs~~~~~~~~~~~i~~ 233 (1074)
+..+..+.|.+...+.+.+++..+. -.+.+.++|+.|+||||+|+.+... ..+-. -...++.-...+.|..
T Consensus 12 P~~f~~viGq~~v~~~L~~~i~~~~-~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~------~~~pC~~C~~C~~i~~ 84 (559)
T PRK05563 12 PQTFEDVVGQEHITKTLKNAIKQGK-ISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPP------DGEPCNECEICKAITN 84 (559)
T ss_pred CCcHHhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCC------CCCCCCccHHHHHHhc
Confidence 4445567788888888888877654 2356778999999999999998776 11100 0001111111222211
Q ss_pred HhccCC---Ccc--hHHHHHHHHHHHHH----ccCeEEEEEcCcccc--ccccccccCCCCCCCCeEEEE-ecCChhHHh
Q 001457 234 FLNTEL---EGD--VEVLRAAFLSERLK----RQKRVLIILDDLWGK--LDLAVVGIPYGEEHKGCKIIL-TSRFKEVCD 301 (1074)
Q Consensus 234 ~l~~~~---~~~--~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~~~~~~~~~~~gs~iiv-TTR~~~v~~ 301 (1074)
....+. +.. ...+.+..+.+... .+++-++|+|++..- ..+..+...+........+|+ ||....+..
T Consensus 85 g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~~ 164 (559)
T PRK05563 85 GSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPA 164 (559)
T ss_pred CCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCcH
Confidence 111000 000 00111222222221 356778899998743 344444333322223445554 454444432
Q ss_pred h-ccCCCeEeCCCCCHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhCCChHHH
Q 001457 302 E-MESTNYVQVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLPNAI 354 (1074)
Q Consensus 302 ~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~i~~~c~glPLai 354 (1074)
. ......+++.+++.++....+...+.... ..-..+....|++.++|-+..+
T Consensus 165 tI~SRc~~~~f~~~~~~ei~~~L~~i~~~eg-i~i~~~al~~ia~~s~G~~R~a 217 (559)
T PRK05563 165 TILSRCQRFDFKRISVEDIVERLKYILDKEG-IEYEDEALRLIARAAEGGMRDA 217 (559)
T ss_pred HHHhHheEEecCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHH
Confidence 2 22335788999999998888877664211 1222466778888888877433
No 171
>PRK08181 transposase; Validated
Probab=97.25 E-value=0.0018 Score=68.70 Aligned_cols=71 Identities=24% Similarity=0.217 Sum_probs=43.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh-cCCCCeEEEEEecCCcCHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHccCeEE
Q 001457 184 NIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKRVQDEIARFLNTELEGDVEVLRAAFLSERLKRQKRVL 262 (1074)
Q Consensus 184 ~vi~I~G~gG~GKTtLa~~v~~~-~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~L 262 (1074)
.-+.++|++|+|||.||..+.+. ......++|+++ .++...+..... . .....+.+.+. +-=|
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~------~~L~~~l~~a~~----~----~~~~~~l~~l~--~~dL 170 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRT------TDLVQKLQVARR----E----LQLESAIAKLD--KFDL 170 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeH------HHHHHHHHHHHh----C----CcHHHHHHHHh--cCCE
Confidence 35899999999999999999988 333344566653 444444433211 0 11122333342 4569
Q ss_pred EEEcCccc
Q 001457 263 IILDDLWG 270 (1074)
Q Consensus 263 lVlDdv~~ 270 (1074)
||+||+..
T Consensus 171 LIIDDlg~ 178 (269)
T PRK08181 171 LILDDLAY 178 (269)
T ss_pred EEEecccc
Confidence 99999853
No 172
>CHL00176 ftsH cell division protein; Validated
Probab=97.21 E-value=0.003 Score=75.57 Aligned_cols=174 Identities=19% Similarity=0.242 Sum_probs=97.3
Q ss_pred CCcccCcchHHHHHHHHHHHhcCC-------CceeEEEEEcCCCCcHHHHHHHHHhh-cCCCCeEEEEEecCCcCHHHHH
Q 001457 157 PEFVPLKSALEVIKSVMKLLKDNS-------ISINIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKRVQ 228 (1074)
Q Consensus 157 ~~~~~~~~r~~~~~~l~~~l~~~~-------~~~~vi~I~G~gG~GKTtLa~~v~~~-~~~F~~~~wv~vs~~~~~~~~~ 228 (1074)
.++.|.+...+++.+++..+.... ...+-|.++|++|+|||++|+.+++. ... |+.++.. ++.
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p-----~i~is~s----~f~ 253 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVP-----FFSISGS----EFV 253 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCC-----eeeccHH----HHH
Confidence 445555556666777777765432 12456899999999999999999987 333 2333321 111
Q ss_pred HHHHHHhccCCCcchHHHHHHHHHHHHHccCeEEEEEcCccccc------------c----ccccccCCC--CCCCCeEE
Q 001457 229 DEIARFLNTELEGDVEVLRAAFLSERLKRQKRVLIILDDLWGKL------------D----LAVVGIPYG--EEHKGCKI 290 (1074)
Q Consensus 229 ~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~------------~----~~~~~~~~~--~~~~gs~i 290 (1074)
... .+ .. ......+.+....+.+++|++||++... . +..+...+. ....+-.|
T Consensus 254 ~~~---~g-----~~-~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViV 324 (638)
T CHL00176 254 EMF---VG-----VG-AARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIV 324 (638)
T ss_pred HHh---hh-----hh-HHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeE
Confidence 000 00 00 1112222223334678999999996320 1 112211111 12345677
Q ss_pred EEecCChhHHh-hc----cCCCeEeCCCCCHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhCCC
Q 001457 291 ILTSRFKEVCD-EM----ESTNYVQVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKL 350 (1074)
Q Consensus 291 ivTTR~~~v~~-~~----~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~i~~~c~gl 350 (1074)
|.||...+... .+ .-+..+.+...+.++-.++++.++...... .......+++.+.|.
T Consensus 325 IaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~--~d~~l~~lA~~t~G~ 387 (638)
T CHL00176 325 IAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLS--PDVSLELIARRTPGF 387 (638)
T ss_pred EEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccc--hhHHHHHHHhcCCCC
Confidence 77776654422 11 123578888889999999998887532111 123456677787773
No 173
>PRK08118 topology modulation protein; Reviewed
Probab=97.19 E-value=0.0002 Score=70.61 Aligned_cols=31 Identities=35% Similarity=0.535 Sum_probs=27.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh----cCCCCeEEE
Q 001457 185 IIGVYGSGGIGKTTLMKQVMKQ----EIPFDKVIF 215 (1074)
Q Consensus 185 vi~I~G~gG~GKTtLa~~v~~~----~~~F~~~~w 215 (1074)
-|.|+|++|+||||||+.+++. .-+||..+|
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 5889999999999999999998 356787776
No 174
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.15 E-value=0.0055 Score=73.09 Aligned_cols=193 Identities=16% Similarity=0.144 Sum_probs=101.4
Q ss_pred CCCcccCcchHHHHHHHHHHHhcCCCceeEEEEEcCCCCcHHHHHHHHHhh--cCC-CCeEEEEEecCCcCHHHHHHHHH
Q 001457 156 TPEFVPLKSALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ--EIP-FDKVIFVRVTQTPDVKRVQDEIA 232 (1074)
Q Consensus 156 ~~~~~~~~~r~~~~~~l~~~l~~~~~~~~vi~I~G~gG~GKTtLa~~v~~~--~~~-F~~~~wv~vs~~~~~~~~~~~i~ 232 (1074)
+..+..+.|.+..++.+...+..+. -.+.+.++|+.|+||||+|+.+.+. ..+ .+. ..++.-...+.|.
T Consensus 12 P~~f~~iiGq~~v~~~L~~~i~~~~-~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~-------~~c~~c~~c~~i~ 83 (576)
T PRK14965 12 PQTFSDLTGQEHVSRTLQNAIDTGR-VAHAFLFTGARGVGKTSTARILAKALNCEQGLTA-------EPCNVCPPCVEIT 83 (576)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCC-------CCCCccHHHHHHh
Confidence 3445556677777788888877654 1356689999999999999998877 111 100 0001111111111
Q ss_pred HHhccC---CCc--chHHHHHHHHHHHHH----ccCeEEEEEcCcccc--ccccccccCCCCCCCCeEEEE-ecCChhHH
Q 001457 233 RFLNTE---LEG--DVEVLRAAFLSERLK----RQKRVLIILDDLWGK--LDLAVVGIPYGEEHKGCKIIL-TSRFKEVC 300 (1074)
Q Consensus 233 ~~l~~~---~~~--~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~~~~~~~~~~~gs~iiv-TTR~~~v~ 300 (1074)
..-..+ .+. ....+.+..+.+.+. .+++-++|+|++..- ...+.+...+-.....+.+|+ ||....+.
T Consensus 84 ~g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~ 163 (576)
T PRK14965 84 EGRSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVP 163 (576)
T ss_pred cCCCCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhh
Confidence 100000 000 000111222222221 245668899998753 233333333322233555554 55555554
Q ss_pred hhc-cCCCeEeCCCCCHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhCCCh-HHHHHH
Q 001457 301 DEM-ESTNYVQVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLP-NAIVII 357 (1074)
Q Consensus 301 ~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~i~~~c~glP-Lai~~~ 357 (1074)
... .....+++++++.++....+...+.... ..-..+....|++.++|-. .|+..+
T Consensus 164 ~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~eg-i~i~~~al~~la~~a~G~lr~al~~L 221 (576)
T PRK14965 164 ITILSRCQRFDFRRIPLQKIVDRLRYIADQEG-ISISDAALALVARKGDGSMRDSLSTL 221 (576)
T ss_pred HHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 332 2335788999999988877776554211 1223456778888888865 444444
No 175
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.14 E-value=0.012 Score=64.49 Aligned_cols=192 Identities=13% Similarity=0.110 Sum_probs=103.1
Q ss_pred cCcchHHHHHHHHHHHhcCCCceeEEEEEcCCCCcHHHHHHHHHhh--cCC--------------CCeEEEEEecCCcCH
Q 001457 161 PLKSALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ--EIP--------------FDKVIFVRVTQTPDV 224 (1074)
Q Consensus 161 ~~~~r~~~~~~l~~~l~~~~~~~~vi~I~G~gG~GKTtLa~~v~~~--~~~--------------F~~~~wv~vs~~~~~ 224 (1074)
.+.|.+..++.+...+..+. -.+...++|+.|+||+++|..+... ... ..-..|+.-....+-
T Consensus 5 ~iiGq~~~~~~L~~~i~~~r-l~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~g 83 (314)
T PRK07399 5 NLIGQPLAIELLTAAIKQNR-IAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQG 83 (314)
T ss_pred HhCCHHHHHHHHHHHHHhCC-CCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccccc
Confidence 45677777888888776654 2378999999999999999888776 211 112234321000000
Q ss_pred HHHHHHHHHHhcc--CCCcchHHHHHHHHHHHHH----ccCeEEEEEcCcccc--ccccccccCCCCCCCCeEEEEecCC
Q 001457 225 KRVQDEIARFLNT--ELEGDVEVLRAAFLSERLK----RQKRVLIILDDLWGK--LDLAVVGIPYGEEHKGCKIILTSRF 296 (1074)
Q Consensus 225 ~~~~~~i~~~l~~--~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~~~~~~~~~~~gs~iivTTR~ 296 (1074)
..+..+-+...+. ........+.++.+.+.+. .+++-++|+|++..- ...+.+...+-.-.+..=|++|++.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp~~~fILi~~~~ 163 (314)
T PRK07399 84 KLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPGNGTLILIAPSP 163 (314)
T ss_pred cccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCCCCeEEEEECCh
Confidence 0000111111110 0000111222334444443 367778999998643 2233332222111223344455554
Q ss_pred hhHHhhc-cCCCeEeCCCCCHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhCCChHHHHHH
Q 001457 297 KEVCDEM-ESTNYVQVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLPNAIVII 357 (1074)
Q Consensus 297 ~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 357 (1074)
..+...+ .....+++.++++++..+.+.+...... .......++..++|-|..+...
T Consensus 164 ~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~----~~~~~~~l~~~a~Gs~~~al~~ 221 (314)
T PRK07399 164 ESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEI----LNINFPELLALAQGSPGAAIAN 221 (314)
T ss_pred HhCcHHHHhhceEEecCCCCHHHHHHHHHHhhcccc----chhHHHHHHHHcCCCHHHHHHH
Confidence 4443333 3347899999999999999987743111 1111357899999999655443
No 176
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.13 E-value=0.0091 Score=63.47 Aligned_cols=201 Identities=16% Similarity=0.209 Sum_probs=112.3
Q ss_pred CCCCCcccCcchHHHHHHHHHHHhc----CC-------CceeEEEEEcCCCCcHHHHHHHHHhh-cCCCCeEEEEEecCC
Q 001457 154 IPTPEFVPLKSALEVIKSVMKLLKD----NS-------ISINIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQT 221 (1074)
Q Consensus 154 ~~~~~~~~~~~r~~~~~~l~~~l~~----~~-------~~~~vi~I~G~gG~GKTtLa~~v~~~-~~~F~~~~wv~vs~~ 221 (1074)
.|.-.+..+.|-++.++++-+.+.- .+ ...+=|.+||++|.|||-||++|+++ ...| +.|..+
T Consensus 145 ~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtF-----IrvvgS 219 (406)
T COG1222 145 KPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATF-----IRVVGS 219 (406)
T ss_pred CCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceE-----EEeccH
Confidence 4455555566766666666655421 11 23677889999999999999999998 5544 555443
Q ss_pred cCHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHccCeEEEEEcCccccc----------c------ccccccCCC--C
Q 001457 222 PDVKRVQDEIARFLNTELEGDVEVLRAAFLSERLKRQKRVLIILDDLWGKL----------D------LAVVGIPYG--E 283 (1074)
Q Consensus 222 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~----------~------~~~~~~~~~--~ 283 (1074)
.-+.+. +|. -......+.+.-+.+....|.+|.++... + .-++...+. +
T Consensus 220 ElVqKY-------iGE------GaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD 286 (406)
T COG1222 220 ELVQKY-------IGE------GARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFD 286 (406)
T ss_pred HHHHHH-------hcc------chHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCC
Confidence 211111 110 01223333333446788999999886420 0 111222222 2
Q ss_pred CCCCeEEEEecCChhHHh-----hccCCCeEeCCCCCHHHHHHHHHHhcCC--CCCCchhHHHHHHHHHHhCCCh----H
Q 001457 284 EHKGCKIILTSRFKEVCD-----EMESTNYVQVEELTDEDRLILFKKKAGL--PEGTKAFDRAAEEVVRQCGKLP----N 352 (1074)
Q Consensus 284 ~~~gs~iivTTR~~~v~~-----~~~~~~~~~l~~L~~~~~~~lf~~~a~~--~~~~~~~~~~~~~i~~~c~glP----L 352 (1074)
....-|||..|--.++.. .-.-++.++++.=+.+.-.++|+-++.. -.+.-+++ .|++.|.|.- -
T Consensus 287 ~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e----~la~~~~g~sGAdlk 362 (406)
T COG1222 287 PRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLE----LLARLTEGFSGADLK 362 (406)
T ss_pred CCCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHH----HHHHhcCCCchHHHH
Confidence 233568998887666522 2223467888865666666778777652 22233333 4666676654 4
Q ss_pred HHHHHHHHHc--C-C---ChhHHHHHHHHH
Q 001457 353 AIVIIGTALR--H-K---PVREWNEAIKRK 376 (1074)
Q Consensus 353 ai~~~~~~l~--~-~---~~~~w~~~~~~l 376 (1074)
|+.+=|++++ . + +.+.+..+.+..
T Consensus 363 aictEAGm~AiR~~R~~Vt~~DF~~Av~KV 392 (406)
T COG1222 363 AICTEAGMFAIRERRDEVTMEDFLKAVEKV 392 (406)
T ss_pred HHHHHHhHHHHHhccCeecHHHHHHHHHHH
Confidence 5666666663 2 1 345555555543
No 177
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.11 E-value=0.017 Score=71.89 Aligned_cols=48 Identities=25% Similarity=0.367 Sum_probs=33.9
Q ss_pred cchHHHHHHHHHHHhc----CCCceeEEEEEcCCCCcHHHHHHHHHhh-cCCC
Q 001457 163 KSALEVIKSVMKLLKD----NSISINIIGVYGSGGIGKTTLMKQVMKQ-EIPF 210 (1074)
Q Consensus 163 ~~r~~~~~~l~~~l~~----~~~~~~vi~I~G~gG~GKTtLa~~v~~~-~~~F 210 (1074)
.|.++.++.+.+++.. ....-+++.++|++|+|||++|+.+.+. ...|
T Consensus 323 ~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~ 375 (775)
T TIGR00763 323 YGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALNRKF 375 (775)
T ss_pred CChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCe
Confidence 3556666666665431 1222458999999999999999999988 5554
No 178
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.08 E-value=0.0029 Score=77.06 Aligned_cols=156 Identities=16% Similarity=0.220 Sum_probs=88.5
Q ss_pred CCcccCcchHHHHHHHHHHHhcCCCceeEEEEEcCCCCcHHHHHHHHHhh--cCC-----CCeEEEEEecCCcCHHHHHH
Q 001457 157 PEFVPLKSALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ--EIP-----FDKVIFVRVTQTPDVKRVQD 229 (1074)
Q Consensus 157 ~~~~~~~~r~~~~~~l~~~l~~~~~~~~vi~I~G~gG~GKTtLa~~v~~~--~~~-----F~~~~wv~vs~~~~~~~~~~ 229 (1074)
..+.++.||++++.++++.|.... ..-+.++|.+|+|||++|+.+... ... .++.+|.. +...+
T Consensus 183 g~~~~liGR~~ei~~~i~iL~r~~--~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l-----~~~~l-- 253 (758)
T PRK11034 183 GGIDPLIGREKELERAIQVLCRRR--KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL-----DIGSL-- 253 (758)
T ss_pred CCCCcCcCCCHHHHHHHHHHhccC--CCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec-----cHHHH--
Confidence 334457789999999999887754 334468999999999999999877 221 24455521 11111
Q ss_pred HHHHHhccCCCcchHHHHHHHHHHHHHccCeEEEEEcCcccc----------ccccccccCCCCCCCCeEEEEecCChhH
Q 001457 230 EIARFLNTELEGDVEVLRAAFLSERLKRQKRVLIILDDLWGK----------LDLAVVGIPYGEEHKGCKIILTSRFKEV 299 (1074)
Q Consensus 230 ~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~----------~~~~~~~~~~~~~~~gs~iivTTR~~~v 299 (1074)
+. +....+ ..+.....+.+.+...++.+|++|++... .+...+..++... ..-+||-+|...+.
T Consensus 254 --la--G~~~~G-e~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~-g~i~vIgATt~~E~ 327 (758)
T PRK11034 254 --LA--GTKYRG-DFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS-GKIRVIGSTTYQEF 327 (758)
T ss_pred --hc--ccchhh-hHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhC-CCeEEEecCChHHH
Confidence 10 111111 11233334444444456789999998642 1111122222211 23455655554442
Q ss_pred Hhhc-------cCCCeEeCCCCCHHHHHHHHHHhc
Q 001457 300 CDEM-------ESTNYVQVEELTDEDRLILFKKKA 327 (1074)
Q Consensus 300 ~~~~-------~~~~~~~l~~L~~~~~~~lf~~~a 327 (1074)
...+ ..-..+.++..+.++..+++....
T Consensus 328 ~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 328 SNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred HHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 1111 112478999999999999987654
No 179
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.05 E-value=0.014 Score=68.81 Aligned_cols=149 Identities=18% Similarity=0.184 Sum_probs=80.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhh-cCCCCeEEEEEecCCcCHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHccCeE
Q 001457 183 INIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKRVQDEIARFLNTELEGDVEVLRAAFLSERLKRQKRV 261 (1074)
Q Consensus 183 ~~vi~I~G~gG~GKTtLa~~v~~~-~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~ 261 (1074)
.+-+.++|++|+|||++|+.+.+. ...| +.++.. ++.... .+ .. ......+.+..+...+.
T Consensus 88 ~~giLL~GppGtGKT~la~alA~~~~~~~-----~~i~~~----~~~~~~---~g-----~~-~~~l~~~f~~a~~~~p~ 149 (495)
T TIGR01241 88 PKGVLLVGPPGTGKTLLAKAVAGEAGVPF-----FSISGS----DFVEMF---VG-----VG-ASRVRDLFEQAKKNAPC 149 (495)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHcCCCe-----eeccHH----HHHHHH---hc-----cc-HHHHHHHHHHHHhcCCC
Confidence 346889999999999999999987 4333 333221 111100 00 01 11122222222335678
Q ss_pred EEEEcCccccc----c--------c----cccccCCC--CCCCCeEEEEecCChhHH-hhc----cCCCeEeCCCCCHHH
Q 001457 262 LIILDDLWGKL----D--------L----AVVGIPYG--EEHKGCKIILTSRFKEVC-DEM----ESTNYVQVEELTDED 318 (1074)
Q Consensus 262 LlVlDdv~~~~----~--------~----~~~~~~~~--~~~~gs~iivTTR~~~v~-~~~----~~~~~~~l~~L~~~~ 318 (1074)
+|++||++... . + ..+...+. ....+-.||.||...+.. ..+ .-+..+.++..+.++
T Consensus 150 Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~ 229 (495)
T TIGR01241 150 IIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKG 229 (495)
T ss_pred EEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHH
Confidence 99999986421 0 1 11111111 122345667677654421 111 233578899999999
Q ss_pred HHHHHHHhcCCCCCCchhHHHHHHHHHHhCCCh
Q 001457 319 RLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLP 351 (1074)
Q Consensus 319 ~~~lf~~~a~~~~~~~~~~~~~~~i~~~c~glP 351 (1074)
-.++|..+.......+ ......+++.+.|.-
T Consensus 230 R~~il~~~l~~~~~~~--~~~l~~la~~t~G~s 260 (495)
T TIGR01241 230 REEILKVHAKNKKLAP--DVDLKAVARRTPGFS 260 (495)
T ss_pred HHHHHHHHHhcCCCCc--chhHHHHHHhCCCCC
Confidence 9999988775322111 122347788887743
No 180
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.04 E-value=0.032 Score=56.84 Aligned_cols=175 Identities=18% Similarity=0.211 Sum_probs=101.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhh-cCCCCeEEEEEec-CCcCHHHHHHHHHHHhccCCCcchH---HHHHHHHHHHHHc
Q 001457 183 INIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVT-QTPDVKRVQDEIARFLNTELEGDVE---VLRAAFLSERLKR 257 (1074)
Q Consensus 183 ~~vi~I~G~gG~GKTtLa~~v~~~-~~~F~~~~wv~vs-~~~~~~~~~~~i~~~l~~~~~~~~~---~~~~~~l~~~l~~ 257 (1074)
.+++.++|.-|+|||++.|..... .+ +.++=|.+. +..+...+...|+..+..+...... ......+....++
T Consensus 51 qg~~~vtGevGsGKTv~~Ral~~s~~~--d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~ 128 (269)
T COG3267 51 QGILAVTGEVGSGKTVLRRALLASLNE--DQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVKK 128 (269)
T ss_pred CceEEEEecCCCchhHHHHHHHHhcCC--CceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHh
Confidence 579999999999999999955444 21 112223333 4566778888888888763221111 2334455555566
Q ss_pred cCe-EEEEEcCcccc--ccccccccCCCCCCCCe---EEEEecC--------ChhHHhhc-cCCCeEeCCCCCHHHHHHH
Q 001457 258 QKR-VLIILDDLWGK--LDLAVVGIPYGEEHKGC---KIILTSR--------FKEVCDEM-ESTNYVQVEELTDEDRLIL 322 (1074)
Q Consensus 258 ~k~-~LlVlDdv~~~--~~~~~~~~~~~~~~~gs---~iivTTR--------~~~v~~~~-~~~~~~~l~~L~~~~~~~l 322 (1074)
++| ..+++||.... +..+.++....-...++ +|+..-. -......- ..+-.|++.|++.++.-.+
T Consensus 129 g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~~t~~y 208 (269)
T COG3267 129 GKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTEAETGLY 208 (269)
T ss_pred CCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcChHHHHHH
Confidence 888 99999997643 23333221111000111 2332221 11111111 1112389999999988888
Q ss_pred HHHhcCCCCCCc--hhHHHHHHHHHHhCCChHHHHHHHH
Q 001457 323 FKKKAGLPEGTK--AFDRAAEEVVRQCGKLPNAIVIIGT 359 (1074)
Q Consensus 323 f~~~a~~~~~~~--~~~~~~~~i~~~c~glPLai~~~~~ 359 (1074)
+..+......++ -..+....|.....|.|.+|..++.
T Consensus 209 l~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~ 247 (269)
T COG3267 209 LRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLAT 247 (269)
T ss_pred HHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHH
Confidence 877665222222 2356678899999999999887764
No 181
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.03 E-value=0.0026 Score=65.48 Aligned_cols=35 Identities=29% Similarity=0.483 Sum_probs=29.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh-cCCCCeEEEEEe
Q 001457 184 NIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRV 218 (1074)
Q Consensus 184 ~vi~I~G~gG~GKTtLa~~v~~~-~~~F~~~~wv~v 218 (1074)
--++|+|..|+||||++..+... ...|+++++++-
T Consensus 14 fr~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t~ 49 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLITP 49 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEec
Confidence 36779999999999999999988 888988877754
No 182
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.03 E-value=0.017 Score=64.15 Aligned_cols=130 Identities=22% Similarity=0.308 Sum_probs=79.1
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHhh-cCCCC--eEEEEEecCCcCHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHcc
Q 001457 182 SINIIGVYGSGGIGKTTLMKQVMKQ-EIPFD--KVIFVRVTQTPDVKRVQDEIARFLNTELEGDVEVLRAAFLSERLKRQ 258 (1074)
Q Consensus 182 ~~~vi~I~G~gG~GKTtLa~~v~~~-~~~F~--~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 258 (1074)
....+.|||..|.|||.|++.+.+. ..... .+++++ ......+.+..+.. ...+..++..
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~------se~f~~~~v~a~~~--------~~~~~Fk~~y--- 174 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLT------SEDFTNDFVKALRD--------NEMEKFKEKY--- 174 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEecc------HHHHHHHHHHHHHh--------hhHHHHHHhh---
Confidence 3678999999999999999999999 44443 344443 23333444333321 1222333332
Q ss_pred CeEEEEEcCcccc---cccc-ccccCCCC-CCCCeEEEEecCCh---------hHHhhccCCCeEeCCCCCHHHHHHHHH
Q 001457 259 KRVLIILDDLWGK---LDLA-VVGIPYGE-EHKGCKIILTSRFK---------EVCDEMESTNYVQVEELTDEDRLILFK 324 (1074)
Q Consensus 259 k~~LlVlDdv~~~---~~~~-~~~~~~~~-~~~gs~iivTTR~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf~ 324 (1074)
.-=++++||++.. +.|+ ++...|+. ...|-.||+|++.. .+...+...-++++.+.+.+....++.
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~ 254 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILR 254 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHH
Confidence 2237889999753 2222 22222221 11244899998532 234445555789999999999999998
Q ss_pred HhcC
Q 001457 325 KKAG 328 (1074)
Q Consensus 325 ~~a~ 328 (1074)
+++.
T Consensus 255 kka~ 258 (408)
T COG0593 255 KKAE 258 (408)
T ss_pred HHHH
Confidence 8775
No 183
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.02 E-value=0.0044 Score=73.31 Aligned_cols=180 Identities=16% Similarity=0.126 Sum_probs=108.7
Q ss_pred CCCcccCcchHHHHHHHHHHHhcCC-------CceeEEEEEcCCCCcHHHHHHHHHhhcCCCCeEEEEEecCCcCHHHHH
Q 001457 156 TPEFVPLKSALEVIKSVMKLLKDNS-------ISINIIGVYGSGGIGKTTLMKQVMKQEIPFDKVIFVRVTQTPDVKRVQ 228 (1074)
Q Consensus 156 ~~~~~~~~~r~~~~~~l~~~l~~~~-------~~~~vi~I~G~gG~GKTtLa~~v~~~~~~F~~~~wv~vs~~~~~~~~~ 228 (1074)
..++.|.+.-.+++.+++..|..++ .-++=+.++|++|+|||-||++++.. ..+-|+++|.+.=++.
T Consensus 310 FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGE----AgVPF~svSGSEFvE~-- 383 (774)
T KOG0731|consen 310 FKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGE----AGVPFFSVSGSEFVEM-- 383 (774)
T ss_pred cccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcc----cCCceeeechHHHHHH--
Confidence 3455566667777888888887653 23677889999999999999999987 2233566665421111
Q ss_pred HHHHHHhccCCCcchHHHHHHHHHHHHHccCeEEEEEcCccccc-----------------cccccccCCCCCC--CCeE
Q 001457 229 DEIARFLNTELEGDVEVLRAAFLSERLKRQKRVLIILDDLWGKL-----------------DLAVVGIPYGEEH--KGCK 289 (1074)
Q Consensus 229 ~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~-----------------~~~~~~~~~~~~~--~gs~ 289 (1074)
+... ...+...+...-+....+.|.+|+++... .+.++........ .+--
T Consensus 384 ------~~g~-----~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi 452 (774)
T KOG0731|consen 384 ------FVGV-----GASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVI 452 (774)
T ss_pred ------hccc-----chHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEE
Confidence 1100 02233444444445678899999876431 1222222111111 2234
Q ss_pred EEEecCChhHHhh-----ccCCCeEeCCCCCHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhCCChHH
Q 001457 290 IILTSRFKEVCDE-----MESTNYVQVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLPNA 353 (1074)
Q Consensus 290 iivTTR~~~v~~~-----~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~i~~~c~glPLa 353 (1074)
++-+|...++.+. -.-++.+.+..=+.....++|.-++....-..+..++++ |+...-|.+=|
T Consensus 453 ~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~-~a~~t~gf~ga 520 (774)
T KOG0731|consen 453 VLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSK-LASLTPGFSGA 520 (774)
T ss_pred EEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHH-HHhcCCCCcHH
Confidence 4446766666221 123367788888888999999988874333345566666 88888887744
No 184
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.00 E-value=0.0093 Score=74.98 Aligned_cols=157 Identities=17% Similarity=0.210 Sum_probs=87.5
Q ss_pred CCCcccCcchHHHHHHHHHHHhcCCCceeEEEEEcCCCCcHHHHHHHHHhh-cCC------CCeEEEEEecCCcCHHHHH
Q 001457 156 TPEFVPLKSALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ-EIP------FDKVIFVRVTQTPDVKRVQ 228 (1074)
Q Consensus 156 ~~~~~~~~~r~~~~~~l~~~l~~~~~~~~vi~I~G~gG~GKTtLa~~v~~~-~~~------F~~~~wv~vs~~~~~~~~~ 228 (1074)
...+.++.||++++..++..|.... ..-+.++|.+|+|||++|+.+... ... .+..+|.. +...+.
T Consensus 169 ~~~~~~~igr~~ei~~~~~~l~r~~--~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l-----~~~~l~ 241 (852)
T TIGR03346 169 EGKLDPVIGRDEEIRRTIQVLSRRT--KNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLAL-----DMGALI 241 (852)
T ss_pred CCCCCcCCCcHHHHHHHHHHHhcCC--CCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEe-----eHHHHh
Confidence 3445567889999999999887665 345568999999999999998887 221 12333321 111111
Q ss_pred HHHHHHhccCCCcchHHHHHHHHHHHHH-ccCeEEEEEcCccccc---------cccccccCCCCCCCCeEEEEecCChh
Q 001457 229 DEIARFLNTELEGDVEVLRAAFLSERLK-RQKRVLIILDDLWGKL---------DLAVVGIPYGEEHKGCKIILTSRFKE 298 (1074)
Q Consensus 229 ~~i~~~l~~~~~~~~~~~~~~~l~~~l~-~~k~~LlVlDdv~~~~---------~~~~~~~~~~~~~~gs~iivTTR~~~ 298 (1074)
. +....+.. ......+.+.+. .+++.+|++|++..-. +...+..+.... ..-++|-+|..++
T Consensus 242 a------~~~~~g~~-e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~-g~i~~IgaTt~~e 313 (852)
T TIGR03346 242 A------GAKYRGEF-EERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALAR-GELHCIGATTLDE 313 (852)
T ss_pred h------cchhhhhH-HHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhc-CceEEEEeCcHHH
Confidence 0 10111111 223333333332 2468999999987431 111222222211 1235555555443
Q ss_pred HHhh-------ccCCCeEeCCCCCHHHHHHHHHHhc
Q 001457 299 VCDE-------MESTNYVQVEELTDEDRLILFKKKA 327 (1074)
Q Consensus 299 v~~~-------~~~~~~~~l~~L~~~~~~~lf~~~a 327 (1074)
.... ...-.++.++..+.++..+++....
T Consensus 314 ~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 314 YRKYIEKDAALERRFQPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred HHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHH
Confidence 3111 1122467899899999999987654
No 185
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.00 E-value=0.00019 Score=75.37 Aligned_cols=126 Identities=24% Similarity=0.281 Sum_probs=57.2
Q ss_pred CCCcEEeeccCCcccCCC------CCCCCCccEEEccCCCCCCC----ChhHHhcCCCccEEEecCCccC-----CCCCC
Q 001457 509 QNCEKLSLMDGNVTALPD------QPKCPRLTTLFLQNNPFADI----PNAFFEHTREIKNLDLSSTNIS-----SLAPS 573 (1074)
Q Consensus 509 ~~~~~L~l~~~~~~~l~~------~~~~~~Lr~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~-----~lp~~ 573 (1074)
+++|.+....|.+..-+. ...++.|..+.++.|.+..- ....|..+++|++|||.+|.++ .+...
T Consensus 157 ~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Laka 236 (382)
T KOG1909|consen 157 PKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKA 236 (382)
T ss_pred cceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHH
Confidence 345555555554433221 12335555555555553221 1123455566666666666554 12223
Q ss_pred ccCCccCCeeeccCCCCCC--Cccc-----cCCCCccEEEeeCCCCc-----ccCccccCCCCCCEEeCCCCc
Q 001457 574 LPCLEKLRSLHLENTHLND--ASLI-----REFGELEVLILKGSRIV-----ELPNGIGTVSNLKLLDLSNNL 634 (1074)
Q Consensus 574 i~~l~~Lr~L~L~~~~l~~--~~~i-----~~l~~L~~L~L~~~~i~-----~lp~~i~~L~~L~~L~l~~~~ 634 (1074)
++.+++||.|++++|.++. ...+ ...++|++|.+.+|.|+ .+-..+...+.|..|++++|.
T Consensus 237 L~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 237 LSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred hcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 4455556666666665544 1111 12345555555555443 112223334445555555544
No 186
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.00 E-value=0.004 Score=68.14 Aligned_cols=100 Identities=14% Similarity=0.105 Sum_probs=64.2
Q ss_pred HHHHHHHhcCCCceeEEEEEcCCCCcHHHHHHHHHhh--cCCCCe-EEEEEecCC-cCHHHHHHHHHHHhccCCCcchHH
Q 001457 170 KSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ--EIPFDK-VIFVRVTQT-PDVKRVQDEIARFLNTELEGDVEV 245 (1074)
Q Consensus 170 ~~l~~~l~~~~~~~~vi~I~G~gG~GKTtLa~~v~~~--~~~F~~-~~wv~vs~~-~~~~~~~~~i~~~l~~~~~~~~~~ 245 (1074)
.++++.+..=..+. -+.|+|.+|+|||||++.+.+. .++-+. ++|+.+.+. ..+.++.+.+...+..........
T Consensus 121 ~RvID~l~PiGkGQ-R~LIvG~pGtGKTTLl~~la~~i~~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de~~~ 199 (380)
T PRK12608 121 MRVVDLVAPIGKGQ-RGLIVAPPRAGKTVLLQQIAAAVAANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDRPPD 199 (380)
T ss_pred HhhhhheeecCCCc-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCCCHH
Confidence 34666665422223 4589999999999999999988 444454 467777654 467888888887766543222211
Q ss_pred H------HH-HHHHHHHHccCeEEEEEcCccc
Q 001457 246 L------RA-AFLSERLKRQKRVLIILDDLWG 270 (1074)
Q Consensus 246 ~------~~-~~l~~~l~~~k~~LlVlDdv~~ 270 (1074)
. .. .....+...+++.+||+|++..
T Consensus 200 ~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsltr 231 (380)
T PRK12608 200 EHIRVAELVLERAKRLVEQGKDVVILLDSLTR 231 (380)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEEeCcHH
Confidence 1 11 2222222368999999999864
No 187
>PRK08116 hypothetical protein; Validated
Probab=96.93 E-value=0.0015 Score=69.88 Aligned_cols=100 Identities=25% Similarity=0.212 Sum_probs=56.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh-cCCCCeEEEEEecCCcCHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHccCeEE
Q 001457 184 NIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKRVQDEIARFLNTELEGDVEVLRAAFLSERLKRQKRVL 262 (1074)
Q Consensus 184 ~vi~I~G~gG~GKTtLa~~v~~~-~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~L 262 (1074)
..+.++|..|+|||.||..+++. ..+...+++++ ..+++..+......... .....+.+.+. +- =|
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~------~~~ll~~i~~~~~~~~~-----~~~~~~~~~l~-~~-dl 181 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVN------FPQLLNRIKSTYKSSGK-----EDENEIIRSLV-NA-DL 181 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE------HHHHHHHHHHHHhcccc-----ccHHHHHHHhc-CC-CE
Confidence 45889999999999999999999 33344566765 34455555444332111 11122334443 22 38
Q ss_pred EEEcCccc--cccccc--cccCCCC-CCCCeEEEEecCC
Q 001457 263 IILDDLWG--KLDLAV--VGIPYGE-EHKGCKIILTSRF 296 (1074)
Q Consensus 263 lVlDdv~~--~~~~~~--~~~~~~~-~~~gs~iivTTR~ 296 (1074)
|||||+.. ..+|.. +..-+.. -..|..+||||..
T Consensus 182 LviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~ 220 (268)
T PRK08116 182 LILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNL 220 (268)
T ss_pred EEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 99999943 334432 2111111 1235679999863
No 188
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.89 E-value=0.012 Score=73.55 Aligned_cols=155 Identities=16% Similarity=0.224 Sum_probs=85.7
Q ss_pred CCcccCcchHHHHHHHHHHHhcCCCceeEEEEEcCCCCcHHHHHHHHHhh--cCC-----CCeEE-EEEecCCcCHHHHH
Q 001457 157 PEFVPLKSALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ--EIP-----FDKVI-FVRVTQTPDVKRVQ 228 (1074)
Q Consensus 157 ~~~~~~~~r~~~~~~l~~~l~~~~~~~~vi~I~G~gG~GKTtLa~~v~~~--~~~-----F~~~~-wv~vs~~~~~~~~~ 228 (1074)
..+.++.||++++..++..|.... ..-+.++|.+|+||||+|+.+... .+. .+..+ ++.++. +.
T Consensus 175 ~~l~~vigr~~ei~~~i~iL~r~~--~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~------l~ 246 (857)
T PRK10865 175 GKLDPVIGRDEEIRRTIQVLQRRT--KNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGA------LV 246 (857)
T ss_pred CCCCcCCCCHHHHHHHHHHHhcCC--cCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhh------hh
Confidence 445567899999999999887765 445669999999999999999887 211 12233 232221 11
Q ss_pred HHHHHHhccCCCcchHHHHHHHHHHHH-HccCeEEEEEcCccccc---------cccccccCCCCCCCCeEEEEecCChh
Q 001457 229 DEIARFLNTELEGDVEVLRAAFLSERL-KRQKRVLIILDDLWGKL---------DLAVVGIPYGEEHKGCKIILTSRFKE 298 (1074)
Q Consensus 229 ~~i~~~l~~~~~~~~~~~~~~~l~~~l-~~~k~~LlVlDdv~~~~---------~~~~~~~~~~~~~~gs~iivTTR~~~ 298 (1074)
. +....+.. +.....+.+.+ ..+++.+|++|++.... +-..+..|.... ..-++|-+|...+
T Consensus 247 a------g~~~~g~~-e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~-g~l~~IgaTt~~e 318 (857)
T PRK10865 247 A------GAKYRGEF-EERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALAR-GELHCVGATTLDE 318 (857)
T ss_pred h------ccchhhhh-HHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhhc-CCCeEEEcCCCHH
Confidence 0 00011111 22223333332 23578999999986431 112222222221 1346666555444
Q ss_pred HHh------hc-cCCCeEeCCCCCHHHHHHHHHHhc
Q 001457 299 VCD------EM-ESTNYVQVEELTDEDRLILFKKKA 327 (1074)
Q Consensus 299 v~~------~~-~~~~~~~l~~L~~~~~~~lf~~~a 327 (1074)
... .. ..-..+.+..-+.++...++....
T Consensus 319 ~r~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~ 354 (857)
T PRK10865 319 YRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLK 354 (857)
T ss_pred HHHHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHh
Confidence 311 11 111356666668899998886654
No 189
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.88 E-value=0.0041 Score=73.75 Aligned_cols=53 Identities=25% Similarity=0.260 Sum_probs=39.9
Q ss_pred CCCCCcccCcchHHHHHHHHHHHhcCC---CceeEEEEEcCCCCcHHHHHHHHHhh
Q 001457 154 IPTPEFVPLKSALEVIKSVMKLLKDNS---ISINIIGVYGSGGIGKTTLMKQVMKQ 206 (1074)
Q Consensus 154 ~~~~~~~~~~~r~~~~~~l~~~l~~~~---~~~~vi~I~G~gG~GKTtLa~~v~~~ 206 (1074)
..+..+..+.+.++.++++..++.... ...+++.|+|++|+||||+++.+...
T Consensus 78 yrP~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~ 133 (637)
T TIGR00602 78 YKPETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKE 133 (637)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 334445556677888888888876532 12468999999999999999999987
No 190
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=96.85 E-value=0.084 Score=61.60 Aligned_cols=155 Identities=14% Similarity=0.203 Sum_probs=86.5
Q ss_pred cchHHHHHHHHHHHhc----CCCceeEEEEEcCCCCcHHHHHHHHHhh-cCCCCeEEEEEecCCcCHHHHHHHHHHHhcc
Q 001457 163 KSALEVIKSVMKLLKD----NSISINIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKRVQDEIARFLNT 237 (1074)
Q Consensus 163 ~~r~~~~~~l~~~l~~----~~~~~~vi~I~G~gG~GKTtLa~~v~~~-~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~ 237 (1074)
.|-++.++.|++.|.- ++-.-+++.+||++|+|||+|++.++.- .+.| +-+++.+--|..+|-..=-..+|
T Consensus 326 YGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~Rkf---vR~sLGGvrDEAEIRGHRRTYIG- 401 (782)
T COG0466 326 YGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRKF---VRISLGGVRDEAEIRGHRRTYIG- 401 (782)
T ss_pred cCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCCE---EEEecCccccHHHhccccccccc-
Confidence 3567778888887632 2222479999999999999999999998 6555 23455555554444321111111
Q ss_pred CCCcchHHHHHHHHHHHHHccCeEEEEEcCcccc------------------ccccccccCCC-CCCCCeEEEE-ecC-C
Q 001457 238 ELEGDVEVLRAAFLSERLKRQKRVLIILDDLWGK------------------LDLAVVGIPYG-EEHKGCKIIL-TSR-F 296 (1074)
Q Consensus 238 ~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~------------------~~~~~~~~~~~-~~~~gs~iiv-TTR-~ 296 (1074)
..+-...+.+.+. ..+.-+++||.|+.- ++=..|...+. ..--=|+|++ ||- +
T Consensus 402 ----amPGrIiQ~mkka--~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTANs 475 (782)
T COG0466 402 ----AMPGKIIQGMKKA--GVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATANS 475 (782)
T ss_pred ----cCChHHHHHHHHh--CCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheEEEeecCc
Confidence 1111122222222 357889999988642 11111111100 0011244443 332 2
Q ss_pred hh-H-HhhccCCCeEeCCCCCHHHHHHHHHHhc
Q 001457 297 KE-V-CDEMESTNYVQVEELTDEDRLILFKKKA 327 (1074)
Q Consensus 297 ~~-v-~~~~~~~~~~~l~~L~~~~~~~lf~~~a 327 (1074)
-+ + +.-++...++++.+-+++|-.++-+++.
T Consensus 476 l~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 476 LDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred cccCChHHhcceeeeeecCCChHHHHHHHHHhc
Confidence 22 2 2334555799999999999888877765
No 191
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.85 E-value=0.045 Score=63.06 Aligned_cols=150 Identities=18% Similarity=0.200 Sum_probs=77.1
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHhh-cCCCCeEEEEEecCCcCHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHccCe
Q 001457 182 SINIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKRVQDEIARFLNTELEGDVEVLRAAFLSERLKRQKR 260 (1074)
Q Consensus 182 ~~~vi~I~G~gG~GKTtLa~~v~~~-~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~ 260 (1074)
..+-|..+|++|+||||+|+.+.+. ...| +.|+... + .. .+-++++... ..+.+.-+.--.
T Consensus 467 ppkGVLlyGPPGC~KT~lAkalAne~~~nF-----lsvkgpE----L----~s----k~vGeSEr~i-r~iF~kAR~~aP 528 (693)
T KOG0730|consen 467 PPKGVLLYGPPGCGKTLLAKALANEAGMNF-----LSVKGPE----L----FS----KYVGESERAI-REVFRKARQVAP 528 (693)
T ss_pred CCceEEEECCCCcchHHHHHHHhhhhcCCe-----eeccCHH----H----HH----HhcCchHHHH-HHHHHHHhhcCC
Confidence 3678899999999999999999998 6666 3333221 0 00 0111122111 111111112355
Q ss_pred EEEEEcCcccccc-------------ccccccCCCCCCCCeEEEE---ecCChhHH-hhcc---CCCeEeCCCCCHHHHH
Q 001457 261 VLIILDDLWGKLD-------------LAVVGIPYGEEHKGCKIIL---TSRFKEVC-DEME---STNYVQVEELTDEDRL 320 (1074)
Q Consensus 261 ~LlVlDdv~~~~~-------------~~~~~~~~~~~~~gs~iiv---TTR~~~v~-~~~~---~~~~~~l~~L~~~~~~ 320 (1074)
++|.||.++.... +..+...+........|+| |-|...+- ..+. .++.+.++.=+.+...
T Consensus 529 ~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~ 608 (693)
T KOG0730|consen 529 CIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARL 608 (693)
T ss_pred eEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHH
Confidence 7788887754210 1111111111111222332 44444442 1223 4467778777888888
Q ss_pred HHHHHhcCCCC--CCchhHHHH--------HHHHHHhCC
Q 001457 321 ILFKKKAGLPE--GTKAFDRAA--------EEVVRQCGK 349 (1074)
Q Consensus 321 ~lf~~~a~~~~--~~~~~~~~~--------~~i~~~c~g 349 (1074)
++|+.++.... +.-++++++ .+|+..|.+
T Consensus 609 ~Ilk~~~kkmp~~~~vdl~~La~~T~g~SGAel~~lCq~ 647 (693)
T KOG0730|consen 609 EILKQCAKKMPFSEDVDLEELAQATEGYSGAEIVAVCQE 647 (693)
T ss_pred HHHHHHHhcCCCCccccHHHHHHHhccCChHHHHHHHHH
Confidence 99999886322 223445543 355555554
No 192
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=96.79 E-value=0.036 Score=56.76 Aligned_cols=24 Identities=29% Similarity=0.639 Sum_probs=21.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhh
Q 001457 183 INIIGVYGSGGIGKTTLMKQVMKQ 206 (1074)
Q Consensus 183 ~~vi~I~G~gG~GKTtLa~~v~~~ 206 (1074)
-.-+.++|..|+|||++++.+.+.
T Consensus 52 annvLL~G~rGtGKSSlVkall~~ 75 (249)
T PF05673_consen 52 ANNVLLWGARGTGKSSLVKALLNE 75 (249)
T ss_pred CcceEEecCCCCCHHHHHHHHHHH
Confidence 446678999999999999999987
No 193
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.79 E-value=0.0081 Score=62.14 Aligned_cols=47 Identities=21% Similarity=0.319 Sum_probs=37.3
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHhh-cCCCCeEEEEEecCCcCHHHHHH
Q 001457 182 SINIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKRVQD 229 (1074)
Q Consensus 182 ~~~vi~I~G~gG~GKTtLa~~v~~~-~~~F~~~~wv~vs~~~~~~~~~~ 229 (1074)
.-+++.|+|.+|+|||++|.++... ......++|++... ++..++.+
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~-~~~~rl~~ 58 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEG-LSPERFKQ 58 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC-CCHHHHHH
Confidence 3579999999999999999998877 44457889999876 66655544
No 194
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=96.78 E-value=0.047 Score=59.51 Aligned_cols=171 Identities=13% Similarity=0.143 Sum_probs=91.6
Q ss_pred HHHHHHHHHHhcCCCceeEEEEEcCCCCcHHHHHHHHHhh---cCCCC----------------eEEEEEecCCcCHHHH
Q 001457 167 EVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ---EIPFD----------------KVIFVRVTQTPDVKRV 227 (1074)
Q Consensus 167 ~~~~~l~~~l~~~~~~~~vi~I~G~gG~GKTtLa~~v~~~---~~~F~----------------~~~wv~vs~~~~~~~~ 227 (1074)
...+.+...+..+. -...+.++|+.|+||+|+|..+... ..... -..||.......
T Consensus 11 ~~~~~l~~~~~~~r-l~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~---- 85 (319)
T PRK08769 11 RAYDQTVAALDAGR-LGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRT---- 85 (319)
T ss_pred HHHHHHHHHHHcCC-cceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcc----
Confidence 44556666665544 2346889999999999999988876 21111 011221000000
Q ss_pred HHHHHHHhccCCCcchHHHHHHHHHHHHH----ccCeEEEEEcCcccc--ccccccccCCCCCCCCeEEEEecCC-hhHH
Q 001457 228 QDEIARFLNTELEGDVEVLRAAFLSERLK----RQKRVLIILDDLWGK--LDLAVVGIPYGEEHKGCKIILTSRF-KEVC 300 (1074)
Q Consensus 228 ~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~~~~~~~~~~~gs~iivTTR~-~~v~ 300 (1074)
+.........+.+..+.+.+. .+++-++|+|+++.- ..-..+...+-.-..++.+|++|.+ ..+.
T Consensus 86 --------~~k~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lL 157 (319)
T PRK08769 86 --------GDKLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLP 157 (319)
T ss_pred --------cccccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCc
Confidence 000000001122223333332 356778999998753 2222222222222346666666654 3343
Q ss_pred hhc-cCCCeEeCCCCCHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhCCChHHHHHH
Q 001457 301 DEM-ESTNYVQVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLPNAIVII 357 (1074)
Q Consensus 301 ~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 357 (1074)
..+ .....+.+.+++.+++.+.+.+. + . + ...+..++..++|.|+.+..+
T Consensus 158 pTIrSRCq~i~~~~~~~~~~~~~L~~~-~--~--~--~~~a~~~~~l~~G~p~~A~~~ 208 (319)
T PRK08769 158 ATIRSRCQRLEFKLPPAHEALAWLLAQ-G--V--S--ERAAQEALDAARGHPGLAAQW 208 (319)
T ss_pred hHHHhhheEeeCCCcCHHHHHHHHHHc-C--C--C--hHHHHHHHHHcCCCHHHHHHH
Confidence 332 23367899999999998888654 2 1 1 223667899999999866543
No 195
>PRK07261 topology modulation protein; Provisional
Probab=96.75 E-value=0.0038 Score=61.94 Aligned_cols=31 Identities=29% Similarity=0.563 Sum_probs=24.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh----cCCCCeEEE
Q 001457 185 IIGVYGSGGIGKTTLMKQVMKQ----EIPFDKVIF 215 (1074)
Q Consensus 185 vi~I~G~gG~GKTtLa~~v~~~----~~~F~~~~w 215 (1074)
.|.|+|++|+||||||+.+... .-+.|...|
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~ 36 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHF 36 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEe
Confidence 4899999999999999999876 224455555
No 196
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.74 E-value=0.00056 Score=69.43 Aligned_cols=18 Identities=22% Similarity=0.385 Sum_probs=8.7
Q ss_pred cCCccCCeeeccCCCCCC
Q 001457 575 PCLEKLRSLHLENTHLND 592 (1074)
Q Consensus 575 ~~l~~Lr~L~L~~~~l~~ 592 (1074)
..+++|++|++++|+|+.
T Consensus 88 e~~P~l~~l~ls~Nki~~ 105 (260)
T KOG2739|consen 88 EKAPNLKVLNLSGNKIKD 105 (260)
T ss_pred hhCCceeEEeecCCcccc
Confidence 334555555555555443
No 197
>PHA00729 NTP-binding motif containing protein
Probab=96.74 E-value=0.0078 Score=61.32 Aligned_cols=34 Identities=24% Similarity=0.416 Sum_probs=27.2
Q ss_pred HHHHHHhcCCCceeEEEEEcCCCCcHHHHHHHHHhh
Q 001457 171 SVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ 206 (1074)
Q Consensus 171 ~l~~~l~~~~~~~~vi~I~G~gG~GKTtLa~~v~~~ 206 (1074)
.++..+...+ ...|.|.|.+|+||||||..+.+.
T Consensus 7 ~~~~~l~~~~--f~nIlItG~pGvGKT~LA~aLa~~ 40 (226)
T PHA00729 7 KIVSAYNNNG--FVSAVIFGKQGSGKTTYALKVARD 40 (226)
T ss_pred HHHHHHhcCC--eEEEEEECCCCCCHHHHHHHHHHH
Confidence 4455555555 567899999999999999999876
No 198
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=96.70 E-value=0.0076 Score=69.40 Aligned_cols=96 Identities=19% Similarity=0.332 Sum_probs=61.0
Q ss_pred cchHHHHHHHHHHHhcC----CCceeEEEEEcCCCCcHHHHHHHHHhh-cCCCCeEEEEEecCCcCHHHHHHHHHHHhcc
Q 001457 163 KSALEVIKSVMKLLKDN----SISINIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKRVQDEIARFLNT 237 (1074)
Q Consensus 163 ~~r~~~~~~l~~~l~~~----~~~~~vi~I~G~gG~GKTtLa~~v~~~-~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~ 237 (1074)
.|.++.++.+++.+.-. ...-+++..+|++|+|||++|+.|+.- .+.| +-++|.+-.|..+|-..=-..+|
T Consensus 414 Ygm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkF---fRfSvGG~tDvAeIkGHRRTYVG- 489 (906)
T KOG2004|consen 414 YGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKF---FRFSVGGMTDVAEIKGHRRTYVG- 489 (906)
T ss_pred cchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCce---EEEeccccccHHhhcccceeeec-
Confidence 46778888888887432 234579999999999999999999988 4443 23566776666665322111111
Q ss_pred CCCcchHHHHHHHHHHHHH--ccCeEEEEEcCccc
Q 001457 238 ELEGDVEVLRAAFLSERLK--RQKRVLIILDDLWG 270 (1074)
Q Consensus 238 ~~~~~~~~~~~~~l~~~l~--~~k~~LlVlDdv~~ 270 (1074)
...- .+.+.|+ .-..-|+.+|.|+.
T Consensus 490 ----AMPG----kiIq~LK~v~t~NPliLiDEvDK 516 (906)
T KOG2004|consen 490 ----AMPG----KIIQCLKKVKTENPLILIDEVDK 516 (906)
T ss_pred ----cCCh----HHHHHHHhhCCCCceEEeehhhh
Confidence 1111 2333333 24677899999864
No 199
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=96.68 E-value=0.013 Score=57.56 Aligned_cols=133 Identities=18% Similarity=0.215 Sum_probs=68.7
Q ss_pred hHHHHHHHHHHHhcCCCceeEEEEEcCCCCcHHHHHHHHHhh---cCC------------------CCeEEEEEecCC--
Q 001457 165 ALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ---EIP------------------FDKVIFVRVTQT-- 221 (1074)
Q Consensus 165 r~~~~~~l~~~l~~~~~~~~vi~I~G~gG~GKTtLa~~v~~~---~~~------------------F~~~~wv~vs~~-- 221 (1074)
.++.++.+.+.+..+. -...+.++|..|+||+|+|..+... ... .....|+.-...
T Consensus 2 q~~~~~~L~~~~~~~~-l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~ 80 (162)
T PF13177_consen 2 QEEIIELLKNLIKSGR-LPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKK 80 (162)
T ss_dssp -HHHHHHHHHHHHCTC---SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSS
T ss_pred cHHHHHHHHHHHHcCC-cceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccc
Confidence 3455566666665554 2346899999999999999998877 221 222333332221
Q ss_pred -cCHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHccCeEEEEEcCcccc--ccccccccCCCCCCCCeEEEEecCChh
Q 001457 222 -PDVKRVQDEIARFLNTELEGDVEVLRAAFLSERLKRQKRVLIILDDLWGK--LDLAVVGIPYGEEHKGCKIILTSRFKE 298 (1074)
Q Consensus 222 -~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~--~~~~~~~~~~~~~~~gs~iivTTR~~~ 298 (1074)
..+.++. ++...+.... . .+++=++|+||++.- +....+...+-....++++|++|++.+
T Consensus 81 ~i~i~~ir-~i~~~~~~~~---------------~-~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~ 143 (162)
T PF13177_consen 81 SIKIDQIR-EIIEFLSLSP---------------S-EGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPS 143 (162)
T ss_dssp SBSHHHHH-HHHHHCTSS----------------T-TSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GG
T ss_pred hhhHHHHH-HHHHHHHHHH---------------h-cCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChH
Confidence 2222221 2222221110 0 256778999999863 344444333333345888888888765
Q ss_pred H-Hhh-ccCCCeEeCCCCC
Q 001457 299 V-CDE-MESTNYVQVEELT 315 (1074)
Q Consensus 299 v-~~~-~~~~~~~~l~~L~ 315 (1074)
- ... ......+.+.+++
T Consensus 144 ~il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 144 KILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp GS-HHHHTTSEEEEE----
T ss_pred HChHHHHhhceEEecCCCC
Confidence 3 222 2233466666553
No 200
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=96.67 E-value=0.03 Score=69.05 Aligned_cols=156 Identities=14% Similarity=0.195 Sum_probs=81.6
Q ss_pred CcchHHHHHHHHHHHhc----CCCceeEEEEEcCCCCcHHHHHHHHHhh-cCCCCeEEEEEecCCcCHHHHHHHHHHHhc
Q 001457 162 LKSALEVIKSVMKLLKD----NSISINIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKRVQDEIARFLN 236 (1074)
Q Consensus 162 ~~~r~~~~~~l~~~l~~----~~~~~~vi~I~G~gG~GKTtLa~~v~~~-~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 236 (1074)
..|.++.++.++.++.. +...-.++.++|++|+||||+|+.+... ...|-. ++.+...+...+...-....+
T Consensus 324 ~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~---i~~~~~~d~~~i~g~~~~~~g 400 (784)
T PRK10787 324 HYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVR---MALGGVRDEAEIRGHRRTYIG 400 (784)
T ss_pred ccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEE---EEcCCCCCHHHhccchhccCC
Confidence 44677777888877642 1122468999999999999999999987 444422 333443333333221111111
Q ss_pred cCCCcchHHHHHHHHHHHHHccCeEEEEEcCcccccc------ccccccCC---------------CCCCCCeEEEEecC
Q 001457 237 TELEGDVEVLRAAFLSERLKRQKRVLIILDDLWGKLD------LAVVGIPY---------------GEEHKGCKIILTSR 295 (1074)
Q Consensus 237 ~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~------~~~~~~~~---------------~~~~~gs~iivTTR 295 (1074)
... ......+.+. ....-++++|+++.... .+.+...+ +..-.+.-+|.||.
T Consensus 401 -~~~----G~~~~~l~~~--~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~TaN 473 (784)
T PRK10787 401 -SMP----GKLIQKMAKV--GVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSN 473 (784)
T ss_pred -CCC----cHHHHHHHhc--CCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEEEEcCC
Confidence 111 1111112111 12345789999864311 01111111 11123445555665
Q ss_pred ChhHHhh-ccCCCeEeCCCCCHHHHHHHHHHhc
Q 001457 296 FKEVCDE-MESTNYVQVEELTDEDRLILFKKKA 327 (1074)
Q Consensus 296 ~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~a 327 (1074)
...+... .+...++++.+++++|-.++.+++.
T Consensus 474 ~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 474 SMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred CCCCCHHHhcceeeeecCCCCHHHHHHHHHHhh
Confidence 5443221 1223578899999988888777665
No 201
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=96.66 E-value=0.043 Score=60.83 Aligned_cols=154 Identities=14% Similarity=0.101 Sum_probs=78.8
Q ss_pred hHHHHHHHHHHHhcCCCceeEEEEEcCCCCcHHHHHHHHHhh---cCCCCeEEEEEecCCcCHHHHHHHHHHHhccCC--
Q 001457 165 ALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ---EIPFDKVIFVRVTQTPDVKRVQDEIARFLNTEL-- 239 (1074)
Q Consensus 165 r~~~~~~l~~~l~~~~~~~~vi~I~G~gG~GKTtLa~~v~~~---~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~-- 239 (1074)
.+..++.+...+..+. -.....++|+.|+||||+|+.+.+. ....+.. .++.-...+.+...-..+.
T Consensus 11 q~~~~~~L~~~~~~~~-l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~-------~cg~C~~c~~~~~~~hpD~~~ 82 (329)
T PRK08058 11 QPVVVKMLQNSIAKNR-LSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVE-------PCGTCTNCKRIDSGNHPDVHL 82 (329)
T ss_pred HHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCC-------CCCcCHHHHHHhcCCCCCEEE
Confidence 5555666666665544 2456799999999999999998776 2111100 0000000000100000000
Q ss_pred ---Cc-chHHHHHHHHHHHHH----ccCeEEEEEcCcccc--ccccccccCCCCCCCCeEEEEecCChh-HHhhc-cCCC
Q 001457 240 ---EG-DVEVLRAAFLSERLK----RQKRVLIILDDLWGK--LDLAVVGIPYGEEHKGCKIILTSRFKE-VCDEM-ESTN 307 (1074)
Q Consensus 240 ---~~-~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~~~~~~~~~~~gs~iivTTR~~~-v~~~~-~~~~ 307 (1074)
++ ....+.+..+.+.+. .+++=++|+|++..- ...+.+...+.....++.+|.+|.+.. +.... ....
T Consensus 83 i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll~TIrSRc~ 162 (329)
T PRK08058 83 VAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQILPTILSRCQ 162 (329)
T ss_pred eccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCcHHHHhhce
Confidence 00 000111222222221 245667899998653 223333333333345677777776543 33322 2336
Q ss_pred eEeCCCCCHHHHHHHHHHh
Q 001457 308 YVQVEELTDEDRLILFKKK 326 (1074)
Q Consensus 308 ~~~l~~L~~~~~~~lf~~~ 326 (1074)
.+++.++++++..+.+.+.
T Consensus 163 ~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 163 VVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred eeeCCCCCHHHHHHHHHHc
Confidence 8999999999998877653
No 202
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.60 E-value=0.00042 Score=70.84 Aligned_cols=83 Identities=27% Similarity=0.306 Sum_probs=46.3
Q ss_pred CCCCccEEEccCCCCCCCCh--hHHhcCCCccEEEecCCccCCCCCCc-cCCccCCeeeccCCCCCC---CccccCCCCc
Q 001457 529 KCPRLTTLFLQNNPFADIPN--AFFEHTREIKNLDLSSTNISSLAPSL-PCLEKLRSLHLENTHLND---ASLIREFGEL 602 (1074)
Q Consensus 529 ~~~~Lr~L~l~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~lp~~i-~~l~~Lr~L~L~~~~l~~---~~~i~~l~~L 602 (1074)
.+..++.|+|.+|.++.... .++.++++|++|+++.|.+.....++ -.+.+|++|-|.++.+.. -..+..++.+
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 45566666666666554322 23456666777777766654333333 245566666666666544 3444555555
Q ss_pred cEEEeeCCC
Q 001457 603 EVLILKGSR 611 (1074)
Q Consensus 603 ~~L~L~~~~ 611 (1074)
+.|.++.|+
T Consensus 149 telHmS~N~ 157 (418)
T KOG2982|consen 149 TELHMSDNS 157 (418)
T ss_pred hhhhhccch
Confidence 555555553
No 203
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.58 E-value=0.00012 Score=73.90 Aligned_cols=100 Identities=25% Similarity=0.239 Sum_probs=53.1
Q ss_pred CCCccEEEccCCCCCCCChhHHhcCCCccEEEecCCccCCCCCCccCCccCCeeeccCCCCCCCccccCCCCccEEEeeC
Q 001457 530 CPRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSLAPSLPCLEKLRSLHLENTHLNDASLIREFGELEVLILKG 609 (1074)
Q Consensus 530 ~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~Lr~L~L~~~~l~~~~~i~~l~~L~~L~L~~ 609 (1074)
+.+++.|++.+|.+.++.- ..+|+.|+||.||-|+|+.+ ..+..|++|+.|+|+.
T Consensus 18 l~~vkKLNcwg~~L~DIsi--c~kMp~lEVLsLSvNkIssL-----------------------~pl~rCtrLkElYLRk 72 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISI--CEKMPLLEVLSLSVNKISSL-----------------------APLQRCTRLKELYLRK 72 (388)
T ss_pred HHHhhhhcccCCCccHHHH--HHhcccceeEEeeccccccc-----------------------hhHHHHHHHHHHHHHh
Confidence 3445555555655554432 34555555555555555544 3333444444444444
Q ss_pred CCCcccC--ccccCCCCCCEEeCCCCcCCCCcChh----hhcCCCCcCEEE
Q 001457 610 SRIVELP--NGIGTVSNLKLLDLSNNLFLQVIPPN----VISKLSQLEELY 654 (1074)
Q Consensus 610 ~~i~~lp--~~i~~L~~L~~L~l~~~~~~~~~p~~----~i~~L~~L~~L~ 654 (1074)
|.|..+. ..+.++++|+.|-|..|...+.-+.+ ++.-|++|+.|+
T Consensus 73 N~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 73 NCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred cccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 4444332 23566777777777776655444432 355567776665
No 204
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=96.56 E-value=0.19 Score=54.89 Aligned_cols=173 Identities=9% Similarity=0.046 Sum_probs=91.0
Q ss_pred HHHHHHHHHhcCCCceeEEEEEcCCCCcHHHHHHHHHhh--cCCCCeEEEEEecCCcCHHHHHHHHHHHhccCC------
Q 001457 168 VIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ--EIPFDKVIFVRVTQTPDVKRVQDEIARFLNTEL------ 239 (1074)
Q Consensus 168 ~~~~l~~~l~~~~~~~~vi~I~G~gG~GKTtLa~~v~~~--~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~------ 239 (1074)
..+.+...+..+. -...+-++|+.|+||+++|+.+... ..+-+. ..++.-...+.+...-..+.
T Consensus 11 ~~~~l~~~~~~~r-l~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~-------~~Cg~C~sC~~~~~g~HPD~~~i~p~ 82 (319)
T PRK06090 11 VWQNWKAGLDAGR-IPGALLLQSDEGLGVESLVELFSRALLCQNYQS-------EACGFCHSCELMQSGNHPDLHVIKPE 82 (319)
T ss_pred HHHHHHHHHHcCC-cceeEeeECCCCCCHHHHHHHHHHHHcCCCCCC-------CCCCCCHHHHHHHcCCCCCEEEEecC
Confidence 3445555554443 2457889999999999999998776 111000 00000000111111000000
Q ss_pred -C-cchHHHHHHHHHHHHH----ccCeEEEEEcCcccc--ccccccccCCCCCCCCeEEEEecCCh-hHHhhc-cCCCeE
Q 001457 240 -E-GDVEVLRAAFLSERLK----RQKRVLIILDDLWGK--LDLAVVGIPYGEEHKGCKIILTSRFK-EVCDEM-ESTNYV 309 (1074)
Q Consensus 240 -~-~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~~~~~~~~~~~gs~iivTTR~~-~v~~~~-~~~~~~ 309 (1074)
. .....+.+..+.+.+. .+++=++|+|+++.- ...+.+...+-.-..++.+|.+|.+. .+...+ .....+
T Consensus 83 ~~~~~I~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq~~ 162 (319)
T PRK06090 83 KEGKSITVEQIRQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQW 162 (319)
T ss_pred cCCCcCCHHHHHHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcceeE
Confidence 0 0001122222333331 355668888988753 33333333332223456666665554 444333 334689
Q ss_pred eCCCCCHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhCCChHHHHHH
Q 001457 310 QVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLPNAIVII 357 (1074)
Q Consensus 310 ~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 357 (1074)
.+.++++++..+.+.+.-. + .+..++..++|.|+.+..+
T Consensus 163 ~~~~~~~~~~~~~L~~~~~-----~----~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 163 VVTPPSTAQAMQWLKGQGI-----T----VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred eCCCCCHHHHHHHHHHcCC-----c----hHHHHHHHcCCCHHHHHHH
Confidence 9999999999888865421 1 1356789999999876544
No 205
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=96.52 E-value=0.095 Score=57.29 Aligned_cols=173 Identities=8% Similarity=0.076 Sum_probs=92.6
Q ss_pred HHHHHHHHHhcCCCceeEEEEEcCCCCcHHHHHHHHHhh---cCCCCeEEEEEecCCcCHHHHHHHHHHHhccCC-----
Q 001457 168 VIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ---EIPFDKVIFVRVTQTPDVKRVQDEIARFLNTEL----- 239 (1074)
Q Consensus 168 ~~~~l~~~l~~~~~~~~vi~I~G~gG~GKTtLa~~v~~~---~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~----- 239 (1074)
..+.+...+..+. -...+.+.|+.|+||+++|+.+... ...... ..++.-...+.+...-..+.
T Consensus 10 ~~~~l~~~~~~~r-l~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~-------~~Cg~C~sC~~~~~g~HPD~~~i~p 81 (325)
T PRK06871 10 TYQQITQAFQQGL-GHHALLFKADSGLGTEQLIRALAQWLMCQTPQGD-------QPCGQCHSCHLFQAGNHPDFHILEP 81 (325)
T ss_pred HHHHHHHHHHcCC-cceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCC-------CCCCCCHHHHHHhcCCCCCEEEEcc
Confidence 3445556655544 2357779999999999999998877 221110 00111111111111000000
Q ss_pred -Cc-chHHHHHHHHHHHHH----ccCeEEEEEcCcccc--ccccccccCCCCCCCCeEEEEecCCh-hHHhhc-cCCCeE
Q 001457 240 -EG-DVEVLRAAFLSERLK----RQKRVLIILDDLWGK--LDLAVVGIPYGEEHKGCKIILTSRFK-EVCDEM-ESTNYV 309 (1074)
Q Consensus 240 -~~-~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~~~~~~~~~~~gs~iivTTR~~-~v~~~~-~~~~~~ 309 (1074)
++ ....+.+..+.+.+. .+++=++|+|+++.- .....+...+-.-..++.+|++|.+. .+...+ .....+
T Consensus 82 ~~~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~~ 161 (325)
T PRK06871 82 IDNKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTW 161 (325)
T ss_pred ccCCCCCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceEE
Confidence 00 001222233333332 367778889998753 23333332222223466677776654 444332 334689
Q ss_pred eCCCCCHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhCCChHHH
Q 001457 310 QVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLPNAI 354 (1074)
Q Consensus 310 ~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~i~~~c~glPLai 354 (1074)
.+.++++++..+.+.+.... . ...+...+..++|.|+.+
T Consensus 162 ~~~~~~~~~~~~~L~~~~~~---~---~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 162 LIHPPEEQQALDWLQAQSSA---E---ISEILTALRINYGRPLLA 200 (325)
T ss_pred eCCCCCHHHHHHHHHHHhcc---C---hHHHHHHHHHcCCCHHHH
Confidence 99999999999888776421 1 123566788999999643
No 206
>PRK09183 transposase/IS protein; Provisional
Probab=96.49 E-value=0.0059 Score=64.99 Aligned_cols=23 Identities=30% Similarity=0.416 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 001457 184 NIIGVYGSGGIGKTTLMKQVMKQ 206 (1074)
Q Consensus 184 ~vi~I~G~gG~GKTtLa~~v~~~ 206 (1074)
..+.|+|++|+|||+||..+.+.
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~ 125 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYE 125 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHH
Confidence 46789999999999999999877
No 207
>CHL00195 ycf46 Ycf46; Provisional
Probab=96.49 E-value=0.022 Score=65.99 Aligned_cols=151 Identities=13% Similarity=0.126 Sum_probs=79.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhh-cCCCCeEEEEEecCCcCHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHccCeE
Q 001457 183 INIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKRVQDEIARFLNTELEGDVEVLRAAFLSERLKRQKRV 261 (1074)
Q Consensus 183 ~~vi~I~G~gG~GKTtLa~~v~~~-~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~ 261 (1074)
.+-|.++|++|+|||.+|+.+.+. ...| +-++.+ .+. ....+.++. ....+.+..+...++
T Consensus 259 pkGILL~GPpGTGKTllAkaiA~e~~~~~---~~l~~~------~l~--------~~~vGese~-~l~~~f~~A~~~~P~ 320 (489)
T CHL00195 259 PRGLLLVGIQGTGKSLTAKAIANDWQLPL---LRLDVG------KLF--------GGIVGESES-RMRQMIRIAEALSPC 320 (489)
T ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCCE---EEEEhH------Hhc--------ccccChHHH-HHHHHHHHHHhcCCc
Confidence 467889999999999999999988 4333 112211 111 011111221 222222333346889
Q ss_pred EEEEcCccccc----cc----------cccccCCCCCCCCeEEEEecCChhH-Hhhc----cCCCeEeCCCCCHHHHHHH
Q 001457 262 LIILDDLWGKL----DL----------AVVGIPYGEEHKGCKIILTSRFKEV-CDEM----ESTNYVQVEELTDEDRLIL 322 (1074)
Q Consensus 262 LlVlDdv~~~~----~~----------~~~~~~~~~~~~gs~iivTTR~~~v-~~~~----~~~~~~~l~~L~~~~~~~l 322 (1074)
+|++|+++..- .. ..+...+.....+--||.||...+- -..+ .-+..+.++.-+.++-.++
T Consensus 321 IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~I 400 (489)
T CHL00195 321 ILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKI 400 (489)
T ss_pred EEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHH
Confidence 99999987421 00 0011111111223446667765442 1111 2345788888899999999
Q ss_pred HHHhcCCCCCCchhHHHHHHHHHHhCCCh
Q 001457 323 FKKKAGLPEGTKAFDRAAEEVVRQCGKLP 351 (1074)
Q Consensus 323 f~~~a~~~~~~~~~~~~~~~i~~~c~glP 351 (1074)
|..+.........-......+++.+.|.-
T Consensus 401 l~~~l~~~~~~~~~~~dl~~La~~T~GfS 429 (489)
T CHL00195 401 FKIHLQKFRPKSWKKYDIKKLSKLSNKFS 429 (489)
T ss_pred HHHHHhhcCCCcccccCHHHHHhhcCCCC
Confidence 98877522111100112345666666644
No 208
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.48 E-value=0.014 Score=61.81 Aligned_cols=87 Identities=23% Similarity=0.269 Sum_probs=54.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhh---cCC----CCeEEEEEecCCcCHHHHHHHHHHHhccCCC-----------cchH
Q 001457 183 INIIGVYGSGGIGKTTLMKQVMKQ---EIP----FDKVIFVRVTQTPDVKRVQDEIARFLNTELE-----------GDVE 244 (1074)
Q Consensus 183 ~~vi~I~G~gG~GKTtLa~~v~~~---~~~----F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~-----------~~~~ 244 (1074)
-.++.|+|.+|+||||+|.+++-. ... ...++|++..+.++..++. ++++..+.... ...+
T Consensus 19 g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~~~~~ 97 (235)
T cd01123 19 GSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLV-QIAERFGLDPEEVLDNIYVARAYNSD 97 (235)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHH-HHHHHhccChHhHhcCEEEEecCCHH
Confidence 579999999999999999998754 221 3688999988877765543 33333322110 0111
Q ss_pred --HHHHHHHHHHHHcc-CeEEEEEcCccc
Q 001457 245 --VLRAAFLSERLKRQ-KRVLIILDDLWG 270 (1074)
Q Consensus 245 --~~~~~~l~~~l~~~-k~~LlVlDdv~~ 270 (1074)
......+.+.+.+. +--+||+|.+..
T Consensus 98 ~l~~~l~~l~~~l~~~~~~~liVIDSis~ 126 (235)
T cd01123 98 HQLQLLEELEAILIESSRIKLVIVDSVTA 126 (235)
T ss_pred HHHHHHHHHHHHHhhcCCeeEEEEeCcHH
Confidence 22234444445444 677888888753
No 209
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.44 E-value=0.019 Score=71.83 Aligned_cols=57 Identities=19% Similarity=0.244 Sum_probs=36.6
Q ss_pred cchHHHHHHHHHHHhc-------CCCceeEEEEEcCCCCcHHHHHHHHHhh-cCCCCeEEEEEec
Q 001457 163 KSALEVIKSVMKLLKD-------NSISINIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVT 219 (1074)
Q Consensus 163 ~~r~~~~~~l~~~l~~-------~~~~~~vi~I~G~gG~GKTtLa~~v~~~-~~~F~~~~wv~vs 219 (1074)
.|.+..++.+...+.. .+....++.++|+.|+|||++|+.+.+. ...-...+.++++
T Consensus 571 iGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~s 635 (857)
T PRK10865 571 IGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMS 635 (857)
T ss_pred eCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhH
Confidence 3566666666665532 1112357899999999999999999876 2222334455544
No 210
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.43 E-value=0.063 Score=57.47 Aligned_cols=56 Identities=21% Similarity=0.331 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHhcCCCceeEEEEEcCCCCcHHHHHHHHHhh-cCCCCeEEEEEecCCcCHHHHH
Q 001457 166 LEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKRVQ 228 (1074)
Q Consensus 166 ~~~~~~l~~~l~~~~~~~~vi~I~G~gG~GKTtLa~~v~~~-~~~F~~~~wv~vs~~~~~~~~~ 228 (1074)
.+.++.++..+..+. -|.+.|.+|+|||++|+.+... .. ..++++.....+..+++
T Consensus 8 ~~l~~~~l~~l~~g~----~vLL~G~~GtGKT~lA~~la~~lg~---~~~~i~~~~~~~~~dll 64 (262)
T TIGR02640 8 KRVTSRALRYLKSGY----PVHLRGPAGTGKTTLAMHVARKRDR---PVMLINGDAELTTSDLV 64 (262)
T ss_pred HHHHHHHHHHHhcCC----eEEEEcCCCCCHHHHHHHHHHHhCC---CEEEEeCCccCCHHHHh
Confidence 344556666665543 5568999999999999999875 32 23455665555555444
No 211
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=96.43 E-value=0.3 Score=54.39 Aligned_cols=191 Identities=14% Similarity=0.190 Sum_probs=116.1
Q ss_pred hHHHHHHHHHHHhcCCCceeEEEEEcCCCCcHHHHH-HHHHhhcCCCCeEEEEEecCC---cCHHHHHHHHHHHhcc---
Q 001457 165 ALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLM-KQVMKQEIPFDKVIFVRVTQT---PDVKRVQDEIARFLNT--- 237 (1074)
Q Consensus 165 r~~~~~~l~~~l~~~~~~~~vi~I~G~gG~GKTtLa-~~v~~~~~~F~~~~wv~vs~~---~~~~~~~~~i~~~l~~--- 237 (1074)
|.+.+++|-.||.+.. -..|.|.|+-|+||+.|+ .++..++.+ +..+++.+- -+-..++..++.++|-
T Consensus 1 R~e~~~~L~~wL~e~~--~TFIvV~GPrGSGK~elV~d~~L~~r~~---vL~IDC~~i~~ar~D~~~I~~lA~qvGY~Pv 75 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENP--NTFIVVQGPRGSGKRELVMDHVLKDRKN---VLVIDCDQIVKARGDAAFIKNLASQVGYFPV 75 (431)
T ss_pred CchHHHHHHHHHhcCC--CeEEEEECCCCCCccHHHHHHHHhCCCC---EEEEEChHhhhccChHHHHHHHHHhcCCCcc
Confidence 4567888889998887 679999999999999999 777776332 667766542 2334455555555431
Q ss_pred --------------------CCC---cchHHHHHH-------HHHH-------------------HHH--ccCeEEEEEc
Q 001457 238 --------------------ELE---GDVEVLRAA-------FLSE-------------------RLK--RQKRVLIILD 266 (1074)
Q Consensus 238 --------------------~~~---~~~~~~~~~-------~l~~-------------------~l~--~~k~~LlVlD 266 (1074)
... ...+.+... .|++ +++ ..+|-+||+|
T Consensus 76 Fsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~~PVVVId 155 (431)
T PF10443_consen 76 FSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPERRPVVVID 155 (431)
T ss_pred hHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCccCCEEEEc
Confidence 111 111111111 1111 000 1237899999
Q ss_pred Ccccc-----------ccccccccCCCCCCCCeEEEEecCChhHH----hhccCC--CeEeCCCCCHHHHHHHHHHhcCC
Q 001457 267 DLWGK-----------LDLAVVGIPYGEEHKGCKIILTSRFKEVC----DEMEST--NYVQVEELTDEDRLILFKKKAGL 329 (1074)
Q Consensus 267 dv~~~-----------~~~~~~~~~~~~~~~gs~iivTTR~~~v~----~~~~~~--~~~~l~~L~~~~~~~lf~~~a~~ 329 (1074)
+.-.. .+|...... .+=..||++|-+.... +.+... +.+.|.-.+++.|.++...+...
T Consensus 156 nF~~k~~~~~~iy~~laeWAa~Lv~----~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~L~~ 231 (431)
T PF10443_consen 156 NFLHKAEENDFIYDKLAEWAASLVQ----NNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLSQLDE 231 (431)
T ss_pred chhccCcccchHHHHHHHHHHHHHh----cCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHHHhcc
Confidence 97543 234432211 2345788888765553 334332 57889999999999999887752
Q ss_pred CCCC-------------------chhHHHHHHHHHHhCCChHHHHHHHHHHcCC
Q 001457 330 PEGT-------------------KAFDRAAEEVVRQCGKLPNAIVIIGTALRHK 364 (1074)
Q Consensus 330 ~~~~-------------------~~~~~~~~~i~~~c~glPLai~~~~~~l~~~ 364 (1074)
.... .....-....++..||==.-+..+++.++.-
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksG 285 (431)
T PF10443_consen 232 DTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSG 285 (431)
T ss_pred cccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcC
Confidence 2100 1233445667778888878888888888653
No 212
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.42 E-value=0.0025 Score=59.38 Aligned_cols=22 Identities=36% Similarity=0.604 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 001457 185 IIGVYGSGGIGKTTLMKQVMKQ 206 (1074)
Q Consensus 185 vi~I~G~gG~GKTtLa~~v~~~ 206 (1074)
||+|+|++|+||||+|+.+.+.
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999986
No 213
>PRK06526 transposase; Provisional
Probab=96.40 E-value=0.0028 Score=66.93 Aligned_cols=24 Identities=25% Similarity=0.241 Sum_probs=21.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhh
Q 001457 183 INIIGVYGSGGIGKTTLMKQVMKQ 206 (1074)
Q Consensus 183 ~~vi~I~G~gG~GKTtLa~~v~~~ 206 (1074)
..-+.++|++|+|||+||..+...
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~ 121 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIR 121 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHH
Confidence 346899999999999999999888
No 214
>PRK12377 putative replication protein; Provisional
Probab=96.39 E-value=0.014 Score=61.09 Aligned_cols=72 Identities=22% Similarity=0.251 Sum_probs=46.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhh-cCCCCeEEEEEecCCcCHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHccCeE
Q 001457 183 INIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKRVQDEIARFLNTELEGDVEVLRAAFLSERLKRQKRV 261 (1074)
Q Consensus 183 ~~vi~I~G~gG~GKTtLa~~v~~~-~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~ 261 (1074)
...+.++|.+|+|||+||..+.+. ......++++++. +++..+-..... ... ...+.+.+ .+--
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~------~l~~~l~~~~~~---~~~----~~~~l~~l--~~~d 165 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVP------DVMSRLHESYDN---GQS----GEKFLQEL--CKVD 165 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHH------HHHHHHHHHHhc---cch----HHHHHHHh--cCCC
Confidence 467899999999999999999999 4444456777653 344444333211 111 11233444 3678
Q ss_pred EEEEcCcc
Q 001457 262 LIILDDLW 269 (1074)
Q Consensus 262 LlVlDdv~ 269 (1074)
|||+||+.
T Consensus 166 LLiIDDlg 173 (248)
T PRK12377 166 LLVLDEIG 173 (248)
T ss_pred EEEEcCCC
Confidence 99999994
No 215
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.32 E-value=0.022 Score=59.57 Aligned_cols=91 Identities=13% Similarity=0.210 Sum_probs=52.2
Q ss_pred HHHHHHHHHHhcCCCceeEEEEEcCCCCcHHHHHHHHHhh-cCCCCeEEEEEecCCcCHHHHHHHHHHHhccCCCcchHH
Q 001457 167 EVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKRVQDEIARFLNTELEGDVEV 245 (1074)
Q Consensus 167 ~~~~~l~~~l~~~~~~~~vi~I~G~gG~GKTtLa~~v~~~-~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~ 245 (1074)
..+..+.+...........+.++|.+|+|||+||..+.+. ...-..++++++ .++...+-..... ....
T Consensus 83 ~al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~------~~l~~~l~~~~~~--~~~~-- 152 (244)
T PRK07952 83 NALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITV------ADIMSAMKDTFSN--SETS-- 152 (244)
T ss_pred HHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEH------HHHHHHHHHHHhh--cccc--
Confidence 3444544444332222457899999999999999999999 333345666643 4444444333210 0111
Q ss_pred HHHHHHHHHHHccCeEEEEEcCcccc
Q 001457 246 LRAAFLSERLKRQKRVLIILDDLWGK 271 (1074)
Q Consensus 246 ~~~~~l~~~l~~~k~~LlVlDdv~~~ 271 (1074)
...+.+.+. +.=+||+||+...
T Consensus 153 --~~~~l~~l~--~~dlLvIDDig~~ 174 (244)
T PRK07952 153 --EEQLLNDLS--NVDLLVIDEIGVQ 174 (244)
T ss_pred --HHHHHHHhc--cCCEEEEeCCCCC
Confidence 122334453 4558889998643
No 216
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=96.31 E-value=0.0073 Score=59.81 Aligned_cols=100 Identities=16% Similarity=0.230 Sum_probs=61.0
Q ss_pred CCCcccCcchHHHHHHHHHHHhcCCCceeEEEEEcCCCCcHHHHHHHHHhh--cC-CCCeEEEEEecCCcCHHHHHHHHH
Q 001457 156 TPEFVPLKSALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ--EI-PFDKVIFVRVTQTPDVKRVQDEIA 232 (1074)
Q Consensus 156 ~~~~~~~~~r~~~~~~l~~~l~~~~~~~~vi~I~G~gG~GKTtLa~~v~~~--~~-~F~~~~wv~vs~~~~~~~~~~~i~ 232 (1074)
+..+..++|.++.++.+--...+++ .+-+.|.||+|+||||-+..+.+. .. .-+.+.-.+.|+.-.+.-+...|-
T Consensus 23 P~~l~dIVGNe~tv~rl~via~~gn--mP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASdeRGIDvVRn~IK 100 (333)
T KOG0991|consen 23 PSVLQDIVGNEDTVERLSVIAKEGN--MPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDERGIDVVRNKIK 100 (333)
T ss_pred chHHHHhhCCHHHHHHHHHHHHcCC--CCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCccccccHHHHHHHH
Confidence 3334456677777776655555555 888999999999999988887776 32 334555566666554444333332
Q ss_pred HHhccCCCcchHHHHHHHHHHHHHccCeEEEEEcCcccc
Q 001457 233 RFLNTELEGDVEVLRAAFLSERLKRQKRVLIILDDLWGK 271 (1074)
Q Consensus 233 ~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~ 271 (1074)
.-... +-.+-.++.-.||||..++-
T Consensus 101 ~FAQ~--------------kv~lp~grhKIiILDEADSM 125 (333)
T KOG0991|consen 101 MFAQK--------------KVTLPPGRHKIIILDEADSM 125 (333)
T ss_pred HHHHh--------------hccCCCCceeEEEeeccchh
Confidence 11100 00111367778899988764
No 217
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.31 E-value=0.013 Score=63.51 Aligned_cols=83 Identities=20% Similarity=0.277 Sum_probs=55.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhh-cCCCCeEEEEEecCCcCHHHHHHHHHHHhccCCC------cchHHHHHHHHHHHH
Q 001457 183 INIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKRVQDEIARFLNTELE------GDVEVLRAAFLSERL 255 (1074)
Q Consensus 183 ~~vi~I~G~gG~GKTtLa~~v~~~-~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~------~~~~~~~~~~l~~~l 255 (1074)
-+++-|+|++|+||||||.++... ...-..++||+..+.++.. .+++++.+.+ ....++....+...+
T Consensus 55 G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li 129 (321)
T TIGR02012 55 GRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIAETLV 129 (321)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHHHHh
Confidence 579999999999999999998777 4444667899887766653 3444443211 112233344444444
Q ss_pred HccCeEEEEEcCccc
Q 001457 256 KRQKRVLIILDDLWG 270 (1074)
Q Consensus 256 ~~~k~~LlVlDdv~~ 270 (1074)
+.+.--+||+|.|-.
T Consensus 130 ~~~~~~lIVIDSv~a 144 (321)
T TIGR02012 130 RSGAVDIIVVDSVAA 144 (321)
T ss_pred hccCCcEEEEcchhh
Confidence 456778999998753
No 218
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.29 E-value=0.056 Score=67.22 Aligned_cols=149 Identities=16% Similarity=0.191 Sum_probs=81.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhh-cCCCCeEEEEEecCCcCHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHccCeE
Q 001457 183 INIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKRVQDEIARFLNTELEGDVEVLRAAFLSERLKRQKRV 261 (1074)
Q Consensus 183 ~~vi~I~G~gG~GKTtLa~~v~~~-~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~ 261 (1074)
.+-|.++|++|+|||++|+.+.+. ...| +.++.. ++ +.. .-+.++ .....+.+........
T Consensus 487 ~~giLL~GppGtGKT~lakalA~e~~~~f-----i~v~~~----~l----~~~----~vGese-~~i~~~f~~A~~~~p~ 548 (733)
T TIGR01243 487 PKGVLLFGPPGTGKTLLAKAVATESGANF-----IAVRGP----EI----LSK----WVGESE-KAIREIFRKARQAAPA 548 (733)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhcCCCE-----EEEehH----HH----hhc----ccCcHH-HHHHHHHHHHHhcCCE
Confidence 456889999999999999999998 5443 333221 11 111 111222 2223333333346789
Q ss_pred EEEEcCccccc--------c------ccccccCCC--CCCCCeEEEEecCChhHHh-hc----cCCCeEeCCCCCHHHHH
Q 001457 262 LIILDDLWGKL--------D------LAVVGIPYG--EEHKGCKIILTSRFKEVCD-EM----ESTNYVQVEELTDEDRL 320 (1074)
Q Consensus 262 LlVlDdv~~~~--------~------~~~~~~~~~--~~~~gs~iivTTR~~~v~~-~~----~~~~~~~l~~L~~~~~~ 320 (1074)
+|++|+++... . ...+...+. ....+--||.||...+... .+ .-+..+.++..+.++-.
T Consensus 549 iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~ 628 (733)
T TIGR01243 549 IIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARK 628 (733)
T ss_pred EEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHH
Confidence 99999986420 0 011111111 1123455666776555421 11 23467889999999999
Q ss_pred HHHHHhcCCCCCCchhHHHHHHHHHHhCCCh
Q 001457 321 ILFKKKAGLPEGTKAFDRAAEEVVRQCGKLP 351 (1074)
Q Consensus 321 ~lf~~~a~~~~~~~~~~~~~~~i~~~c~glP 351 (1074)
++|+.+.......+. .-...+++.+.|.-
T Consensus 629 ~i~~~~~~~~~~~~~--~~l~~la~~t~g~s 657 (733)
T TIGR01243 629 EIFKIHTRSMPLAED--VDLEELAEMTEGYT 657 (733)
T ss_pred HHHHHHhcCCCCCcc--CCHHHHHHHcCCCC
Confidence 999776542221111 11345667777654
No 219
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.28 E-value=0.0085 Score=65.20 Aligned_cols=115 Identities=13% Similarity=0.201 Sum_probs=65.7
Q ss_pred chHHHHHHHHHHHhcCC--CceeEEEEEcCCCCcHHHHHHHHHhh--cCCCCeEEEEEecCCcCHHHHHHHHHHHhccCC
Q 001457 164 SALEVIKSVMKLLKDNS--ISINIIGVYGSGGIGKTTLMKQVMKQ--EIPFDKVIFVRVTQTPDVKRVQDEIARFLNTEL 239 (1074)
Q Consensus 164 ~r~~~~~~l~~~l~~~~--~~~~vi~I~G~gG~GKTtLa~~v~~~--~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~ 239 (1074)
++........+++..-. ...+-+.++|..|+|||.||..+++. ...+ .+.|++++ .++.++.......
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~-~v~~~~~~------~l~~~lk~~~~~~- 206 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELAKKGV-SSTLLHFP------EFIRELKNSISDG- 206 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCC-CEEEEEHH------HHHHHHHHHHhcC-
Confidence 34444555555554321 12467899999999999999999999 4333 35566543 4555554443211
Q ss_pred CcchHHHHHHHHHHHHHccCeEEEEEcCcccc--ccccc--cccCC-CCC-CCCeEEEEecC
Q 001457 240 EGDVEVLRAAFLSERLKRQKRVLIILDDLWGK--LDLAV--VGIPY-GEE-HKGCKIILTSR 295 (1074)
Q Consensus 240 ~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~--~~~~~--~~~~~-~~~-~~gs~iivTTR 295 (1074)
. .....+.+ .+-=||||||+... ..|.. +...+ ... ..+-.+|+||-
T Consensus 207 ---~----~~~~l~~l--~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSN 259 (306)
T PRK08939 207 ---S----VKEKIDAV--KEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSN 259 (306)
T ss_pred ---c----HHHHHHHh--cCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECC
Confidence 1 12223334 36779999998643 45532 32222 111 13456788885
No 220
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.25 E-value=0.014 Score=72.15 Aligned_cols=101 Identities=18% Similarity=0.305 Sum_probs=54.5
Q ss_pred cchHHHHHHHHHHHhcC-------CCceeEEEEEcCCCCcHHHHHHHHHhh-cCCCCeEEEEEecCCcCHHHHHHHHHHH
Q 001457 163 KSALEVIKSVMKLLKDN-------SISINIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKRVQDEIARF 234 (1074)
Q Consensus 163 ~~r~~~~~~l~~~l~~~-------~~~~~vi~I~G~gG~GKTtLa~~v~~~-~~~F~~~~wv~vs~~~~~~~~~~~i~~~ 234 (1074)
.|.++.++.+...+... .....++.++|+.|+|||+||+.+... .. ..+.++.++-.+.. .+.+.
T Consensus 457 ~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~---~~~~~d~se~~~~~----~~~~l 529 (731)
T TIGR02639 457 FGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGV---HLERFDMSEYMEKH----TVSRL 529 (731)
T ss_pred eCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcC---CeEEEeCchhhhcc----cHHHH
Confidence 34556666666665421 112457899999999999999999887 32 23555554422211 11122
Q ss_pred hccCCCcchHHHHHHHHHHHHHccCeEEEEEcCcccc
Q 001457 235 LNTELEGDVEVLRAAFLSERLKRQKRVLIILDDLWGK 271 (1074)
Q Consensus 235 l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~ 271 (1074)
++.... ....+....+.+.++....-+|+||+++..
T Consensus 530 ig~~~g-yvg~~~~~~l~~~~~~~p~~VvllDEieka 565 (731)
T TIGR02639 530 IGAPPG-YVGFEQGGLLTEAVRKHPHCVLLLDEIEKA 565 (731)
T ss_pred hcCCCC-CcccchhhHHHHHHHhCCCeEEEEechhhc
Confidence 222111 000111223444444445679999999753
No 221
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.23 E-value=0.17 Score=56.68 Aligned_cols=156 Identities=21% Similarity=0.234 Sum_probs=90.5
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHhhcCCCCeEEEEEecCCcCHHHHHHHHHHHhccCCCcchHHHHHHHH----HHHHH
Q 001457 181 ISINIIGVYGSGGIGKTTLMKQVMKQEIPFDKVIFVRVTQTPDVKRVQDEIARFLNTELEGDVEVLRAAFL----SERLK 256 (1074)
Q Consensus 181 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l----~~~l~ 256 (1074)
.....+.+.|++|+|||+||..+... ..|..+=-++- +++ -+.++......+ ....+
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~~-S~FPFvKiiSp------e~m------------iG~sEsaKc~~i~k~F~DAYk 596 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIALS-SDFPFVKIISP------EDM------------IGLSESAKCAHIKKIFEDAYK 596 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHhh-cCCCeEEEeCh------HHc------------cCccHHHHHHHHHHHHHHhhc
Confidence 34678889999999999999999876 44553332221 110 111222222222 22333
Q ss_pred ccCeEEEEEcCccccccccccccCC---------------CCCCCCeEEEEecCChhHHhhccCC----CeEeCCCCCH-
Q 001457 257 RQKRVLIILDDLWGKLDLAVVGIPY---------------GEEHKGCKIILTSRFKEVCDEMEST----NYVQVEELTD- 316 (1074)
Q Consensus 257 ~~k~~LlVlDdv~~~~~~~~~~~~~---------------~~~~~gs~iivTTR~~~v~~~~~~~----~~~~l~~L~~- 316 (1074)
..--.||+||+...-+|-.++..+ |+.++.--|+-||....|...|+-. ..|.++.++.
T Consensus 597 -S~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~~ 675 (744)
T KOG0741|consen 597 -SPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTTG 675 (744)
T ss_pred -CcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCch
Confidence 466789999998776766543221 2222233455577778887777543 5788988887
Q ss_pred HHHHHHHHHhc-CCCCCCchhHHHHHHHHHHhCCChHHHHHHHHHH
Q 001457 317 EDRLILFKKKA-GLPEGTKAFDRAAEEVVRQCGKLPNAIVIIGTAL 361 (1074)
Q Consensus 317 ~~~~~lf~~~a-~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~l 361 (1074)
++..+.++..- | .+...+.++.+...+| +-..|+.+-.++
T Consensus 676 ~~~~~vl~~~n~f---sd~~~~~~~~~~~~~~--~~vgIKklL~li 716 (744)
T KOG0741|consen 676 EQLLEVLEELNIF---SDDEVRAIAEQLLSKK--VNVGIKKLLMLI 716 (744)
T ss_pred HHHHHHHHHccCC---CcchhHHHHHHHhccc--cchhHHHHHHHH
Confidence 67777776542 2 2334455666676666 233444444443
No 222
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.20 E-value=0.013 Score=63.70 Aligned_cols=82 Identities=23% Similarity=0.285 Sum_probs=54.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhh-cCCCCeEEEEEecCCcCHHHHHHHHHHHhccCCC------cchHHHHHHHHHHHH
Q 001457 183 INIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKRVQDEIARFLNTELE------GDVEVLRAAFLSERL 255 (1074)
Q Consensus 183 ~~vi~I~G~gG~GKTtLa~~v~~~-~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~------~~~~~~~~~~l~~~l 255 (1074)
-+++-|+|++|+||||||.+++.. ...-..++||+..+.++.. .+++++.+.+ ....++....+...+
T Consensus 55 G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li 129 (325)
T cd00983 55 GRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIADSLV 129 (325)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHHHHHH
Confidence 569999999999999999998776 4445678899988777653 3344443211 112233344444444
Q ss_pred HccCeEEEEEcCcc
Q 001457 256 KRQKRVLIILDDLW 269 (1074)
Q Consensus 256 ~~~k~~LlVlDdv~ 269 (1074)
+.+.--+||+|-|-
T Consensus 130 ~s~~~~lIVIDSva 143 (325)
T cd00983 130 RSGAVDLIVVDSVA 143 (325)
T ss_pred hccCCCEEEEcchH
Confidence 45677899999875
No 223
>PRK09354 recA recombinase A; Provisional
Probab=96.17 E-value=0.014 Score=63.74 Aligned_cols=83 Identities=19% Similarity=0.268 Sum_probs=56.6
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHhh-cCCCCeEEEEEecCCcCHHHHHHHHHHHhccCCC------cchHHHHHHHHHHH
Q 001457 182 SINIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKRVQDEIARFLNTELE------GDVEVLRAAFLSER 254 (1074)
Q Consensus 182 ~~~vi~I~G~gG~GKTtLa~~v~~~-~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~------~~~~~~~~~~l~~~ 254 (1074)
.-+++-|+|++|+||||||.++... ...-..++||+..+.++.. .+++++.+.+ ....++....+...
T Consensus 59 ~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~~~l 133 (349)
T PRK09354 59 RGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIADTL 133 (349)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHHHH
Confidence 3579999999999999999998777 4445678899988877753 3445543321 11223334444455
Q ss_pred HHccCeEEEEEcCcc
Q 001457 255 LKRQKRVLIILDDLW 269 (1074)
Q Consensus 255 l~~~k~~LlVlDdv~ 269 (1074)
++.++--+||+|-|-
T Consensus 134 i~s~~~~lIVIDSva 148 (349)
T PRK09354 134 VRSGAVDLIVVDSVA 148 (349)
T ss_pred hhcCCCCEEEEeChh
Confidence 555677899999875
No 224
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.16 E-value=0.037 Score=58.07 Aligned_cols=46 Identities=26% Similarity=0.396 Sum_probs=36.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhh-cCCC------CeEEEEEecCCcCHHHHH
Q 001457 183 INIIGVYGSGGIGKTTLMKQVMKQ-EIPF------DKVIFVRVTQTPDVKRVQ 228 (1074)
Q Consensus 183 ~~vi~I~G~gG~GKTtLa~~v~~~-~~~F------~~~~wv~vs~~~~~~~~~ 228 (1074)
-.++.|+|.+|+|||++|.++... ...- ..++|++....++..++.
T Consensus 19 g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~ 71 (226)
T cd01393 19 GRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLV 71 (226)
T ss_pred CcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHH
Confidence 569999999999999999998766 3333 567899988777765554
No 225
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.14 E-value=0.014 Score=58.44 Aligned_cols=35 Identities=29% Similarity=0.536 Sum_probs=29.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhh-cCCCCeEEEEE
Q 001457 183 INIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVR 217 (1074)
Q Consensus 183 ~~vi~I~G~gG~GKTtLa~~v~~~-~~~F~~~~wv~ 217 (1074)
..+|.++|+.|+||||+|+.++.. ...+...+++.
T Consensus 7 ~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~ 42 (176)
T PRK05541 7 GYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLD 42 (176)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEe
Confidence 469999999999999999999998 65666666653
No 226
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.13 E-value=0.011 Score=73.66 Aligned_cols=104 Identities=13% Similarity=0.252 Sum_probs=55.2
Q ss_pred CcchHHHHHHHHHHHhc-------CCCceeEEEEEcCCCCcHHHHHHHHHhh-cCCCCeEEEEEecCCcCHHHHHHHHHH
Q 001457 162 LKSALEVIKSVMKLLKD-------NSISINIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKRVQDEIAR 233 (1074)
Q Consensus 162 ~~~r~~~~~~l~~~l~~-------~~~~~~vi~I~G~gG~GKTtLa~~v~~~-~~~F~~~~wv~vs~~~~~~~~~~~i~~ 233 (1074)
+.|.++.++.+.+.+.. ......++.++|+.|+|||.+|+.+... -+.....+-++++.-.+. ..+.+
T Consensus 568 v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~----~~~~~ 643 (852)
T TIGR03345 568 VIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEA----HTVSR 643 (852)
T ss_pred EcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhh----hhhcc
Confidence 34666777777766532 2223568999999999999999988776 222222233333221111 11111
Q ss_pred HhccCCCcchHHHHHHHHHHHHHccCeEEEEEcCccc
Q 001457 234 FLNTELEGDVEVLRAAFLSERLKRQKRVLIILDDLWG 270 (1074)
Q Consensus 234 ~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~ 270 (1074)
-+|... +.........+.+.++.....+|+||++..
T Consensus 644 l~g~~~-gyvg~~~~g~L~~~v~~~p~svvllDEiek 679 (852)
T TIGR03345 644 LKGSPP-GYVGYGEGGVLTEAVRRKPYSVVLLDEVEK 679 (852)
T ss_pred ccCCCC-CcccccccchHHHHHHhCCCcEEEEechhh
Confidence 122211 110001112344445456778999999974
No 227
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.07 E-value=0.077 Score=53.77 Aligned_cols=149 Identities=20% Similarity=0.299 Sum_probs=83.7
Q ss_pred CcchHHHHH---HHHHHHhcCC----CceeEEEEEcCCCCcHHHHHHHHHhh-cCCCCeEEEEEecCCcCHHHHHHHHHH
Q 001457 162 LKSALEVIK---SVMKLLKDNS----ISINIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKRVQDEIAR 233 (1074)
Q Consensus 162 ~~~r~~~~~---~l~~~l~~~~----~~~~vi~I~G~gG~GKTtLa~~v~~~-~~~F~~~~wv~vs~~~~~~~~~~~i~~ 233 (1074)
+.|.++.+. -|++.|.+.+ =..+-|..+|++|.|||.+|+.+.+. +-.| +.|.. .+++. +
T Consensus 123 ViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp~-----l~vka----t~liG---e 190 (368)
T COG1223 123 VIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVPL-----LLVKA----TELIG---E 190 (368)
T ss_pred hhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCce-----EEech----HHHHH---H
Confidence 445444432 3455565432 14788999999999999999999998 4333 22211 12211 1
Q ss_pred HhccCCCcchHHHHHHHHHHHHHccCeEEEEEcCcccc----------cc----ccccccCCC--CCCCCeEEEEecCCh
Q 001457 234 FLNTELEGDVEVLRAAFLSERLKRQKRVLIILDDLWGK----------LD----LAVVGIPYG--EEHKGCKIILTSRFK 297 (1074)
Q Consensus 234 ~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~----------~~----~~~~~~~~~--~~~~gs~iivTTR~~ 297 (1074)
..| .....+..+.++-...-.|++.+|.++-. .+ .+.+...+. ..+.|-..|..|...
T Consensus 191 hVG------dgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaaTN~p 264 (368)
T COG1223 191 HVG------DGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAATNRP 264 (368)
T ss_pred Hhh------hHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEeecCCh
Confidence 111 11334455555555567899999987532 01 111211111 123466666666665
Q ss_pred hHHh-hccCC--CeEeCCCCCHHHHHHHHHHhcC
Q 001457 298 EVCD-EMEST--NYVQVEELTDEDRLILFKKKAG 328 (1074)
Q Consensus 298 ~v~~-~~~~~--~~~~l~~L~~~~~~~lf~~~a~ 328 (1074)
+... ...+. .-|+..--+++|-.+++..++.
T Consensus 265 ~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k 298 (368)
T COG1223 265 ELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAK 298 (368)
T ss_pred hhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHH
Confidence 5532 22222 3566666788888888888875
No 228
>PRK06696 uridine kinase; Validated
Probab=96.06 E-value=0.0092 Score=62.30 Aligned_cols=42 Identities=19% Similarity=0.246 Sum_probs=33.2
Q ss_pred hHHHHHHHHHHHhc-CCCceeEEEEEcCCCCcHHHHHHHHHhh
Q 001457 165 ALEVIKSVMKLLKD-NSISINIIGVYGSGGIGKTTLMKQVMKQ 206 (1074)
Q Consensus 165 r~~~~~~l~~~l~~-~~~~~~vi~I~G~gG~GKTtLa~~v~~~ 206 (1074)
|.+.+++|.+.+.. ......+|+|.|.+|+||||+|+.+...
T Consensus 3 ~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~ 45 (223)
T PRK06696 3 RKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEE 45 (223)
T ss_pred HHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 55666777776643 2234789999999999999999999987
No 229
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.05 E-value=0.018 Score=63.98 Aligned_cols=50 Identities=22% Similarity=0.312 Sum_probs=40.5
Q ss_pred CCcccCcchHHHHHHHHHHHhcCC-------CceeEEEEEcCCCCcHHHHHHHHHhh
Q 001457 157 PEFVPLKSALEVIKSVMKLLKDNS-------ISINIIGVYGSGGIGKTTLMKQVMKQ 206 (1074)
Q Consensus 157 ~~~~~~~~r~~~~~~l~~~l~~~~-------~~~~vi~I~G~gG~GKTtLa~~v~~~ 206 (1074)
.+.-|.+.-.++++++++.|.+.. .=.+=|.++|++|.|||-|||+|...
T Consensus 304 ~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGE 360 (752)
T KOG0734|consen 304 EDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGE 360 (752)
T ss_pred ccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcc
Confidence 344566667788999999998764 12567889999999999999999987
No 230
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.04 E-value=0.15 Score=52.39 Aligned_cols=223 Identities=14% Similarity=0.224 Sum_probs=114.0
Q ss_pred cCcchHHHHHHHHHHHhcCCCceeEEEEEcCCCCcHHHHHHHHHhh-------cCCCCeEEEEEecCC----------c-
Q 001457 161 PLKSALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ-------EIPFDKVIFVRVTQT----------P- 222 (1074)
Q Consensus 161 ~~~~r~~~~~~l~~~l~~~~~~~~vi~I~G~gG~GKTtLa~~v~~~-------~~~F~~~~wv~vs~~----------~- 222 (1074)
.+.++++....+......++ .+...++|+.|.||-|.+..+.++ +-.-+...|.+-|.. +
T Consensus 14 ~l~~~~e~~~~Lksl~~~~d--~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yH 91 (351)
T KOG2035|consen 14 ELIYHEELANLLKSLSSTGD--FPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYH 91 (351)
T ss_pred hcccHHHHHHHHHHhcccCC--CCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccce
Confidence 34555555555555444444 889999999999999977665555 333445556543332 1
Q ss_pred ----------CHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHccCeEE-EEEcCcccc--ccccccccCCCCCCCCeE
Q 001457 223 ----------DVKRVQDEIARFLNTELEGDVEVLRAAFLSERLKRQKRVL-IILDDLWGK--LDLAVVGIPYGEEHKGCK 289 (1074)
Q Consensus 223 ----------~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~L-lVlDdv~~~--~~~~~~~~~~~~~~~gs~ 289 (1074)
.-+-+.++++++...... +.- +..+.|= +|+..+++- +.-..++.....-...+|
T Consensus 92 lEitPSDaG~~DRvViQellKevAQt~q----------ie~--~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~~R 159 (351)
T KOG2035|consen 92 LEITPSDAGNYDRVVIQELLKEVAQTQQ----------IET--QGQRPFKVVVINEADELTRDAQHALRRTMEKYSSNCR 159 (351)
T ss_pred EEeChhhcCcccHHHHHHHHHHHHhhcc----------hhh--ccccceEEEEEechHhhhHHHHHHHHHHHHHHhcCce
Confidence 123344444444332111 000 0123343 344444331 211122111111123556
Q ss_pred EEEecCC-hhHHhhccC-CCeEeCCCCCHHHHHHHHHHhcCCC-CCCchhHHHHHHHHHHhCCCh-HHHHHHHHHHc--C
Q 001457 290 IILTSRF-KEVCDEMES-TNYVQVEELTDEDRLILFKKKAGLP-EGTKAFDRAAEEVVRQCGKLP-NAIVIIGTALR--H 363 (1074)
Q Consensus 290 iivTTR~-~~v~~~~~~-~~~~~l~~L~~~~~~~lf~~~a~~~-~~~~~~~~~~~~i~~~c~glP-Lai~~~~~~l~--~ 363 (1074)
+|+.-.+ ..+...... .-.+++...+++|-...+++.+... -.-| .+++.+|+++++|.- -|+-++ ..++ +
T Consensus 160 lIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp--~~~l~rIa~kS~~nLRrAllml-E~~~~~n 236 (351)
T KOG2035|consen 160 LILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLP--KELLKRIAEKSNRNLRRALLML-EAVRVNN 236 (351)
T ss_pred EEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccCc--HHHHHHHHHHhcccHHHHHHHH-HHHHhcc
Confidence 6654221 112111222 2467899999999999998877521 2222 789999999999854 333332 2221 1
Q ss_pred -----C----ChhHHHHHHHHHhhCCCCCCCCchHHHHHHHHHhhcCC
Q 001457 364 -----K----PVREWNEAIKRKKASTPINVEGIPEEVVLCVALGYDQL 402 (1074)
Q Consensus 364 -----~----~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~sy~~L 402 (1074)
+ +.-+|+-++.+.......+ ..++.+..+-..=|+-|
T Consensus 237 ~~~~a~~~~i~~~dWe~~i~e~a~~i~~e--Qs~~~L~~vR~~LYeLL 282 (351)
T KOG2035|consen 237 EPFTANSQVIPKPDWEIYIQEIARVILKE--QSPAKLLEVRGRLYELL 282 (351)
T ss_pred ccccccCCCCCCccHHHHHHHHHHHHHhc--cCHHHHHHHHHHHHHHH
Confidence 1 3568998888655433221 11255555555555544
No 231
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.01 E-value=0.15 Score=58.69 Aligned_cols=84 Identities=21% Similarity=0.232 Sum_probs=44.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhh--cCC-CCeEEEEEecCCcC--HHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHc
Q 001457 183 INIIGVYGSGGIGKTTLMKQVMKQ--EIP-FDKVIFVRVTQTPD--VKRVQDEIARFLNTELEGDVEVLRAAFLSERLKR 257 (1074)
Q Consensus 183 ~~vi~I~G~gG~GKTtLa~~v~~~--~~~-F~~~~wv~vs~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 257 (1074)
-.+|+|+|.+|+||||++.++... ..+ ...+..++.. .+. ..+.++...+.++................+.+.
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtD-tyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~- 427 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTD-TQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLR- 427 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecc-cccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhc-
Confidence 469999999999999999888776 222 2345555542 222 122222333333332222222222222333332
Q ss_pred cCeEEEEEcCcc
Q 001457 258 QKRVLIILDDLW 269 (1074)
Q Consensus 258 ~k~~LlVlDdv~ 269 (1074)
..=+|++|..-
T Consensus 428 -~~DLVLIDTaG 438 (559)
T PRK12727 428 -DYKLVLIDTAG 438 (559)
T ss_pred -cCCEEEecCCC
Confidence 35578888753
No 232
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.01 E-value=0.045 Score=57.33 Aligned_cols=44 Identities=27% Similarity=0.364 Sum_probs=35.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhh-cCCCCeEEEEEecCCcCHHHH
Q 001457 183 INIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKRV 227 (1074)
Q Consensus 183 ~~vi~I~G~gG~GKTtLa~~v~~~-~~~F~~~~wv~vs~~~~~~~~ 227 (1074)
-.++.|+|.+|+|||++|.++... ...-..++|++.. .++..++
T Consensus 23 g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e-~~~~~r~ 67 (225)
T PRK09361 23 GTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE-GLSPERF 67 (225)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC-CCCHHHH
Confidence 569999999999999999998877 3344678899887 5555544
No 233
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.00 E-value=0.042 Score=57.93 Aligned_cols=88 Identities=18% Similarity=0.342 Sum_probs=54.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh-cCCC-CeEEEEEecCCc-CHHHHHHHHHHHhcc-------CCCcchHH------HH
Q 001457 184 NIIGVYGSGGIGKTTLMKQVMKQ-EIPF-DKVIFVRVTQTP-DVKRVQDEIARFLNT-------ELEGDVEV------LR 247 (1074)
Q Consensus 184 ~vi~I~G~gG~GKTtLa~~v~~~-~~~F-~~~~wv~vs~~~-~~~~~~~~i~~~l~~-------~~~~~~~~------~~ 247 (1074)
.-++|.|.+|+||||||+.+++. +.+| +.++++-+.+.. .+.++.+++...-.. ....++.. ..
T Consensus 70 Qr~~If~~~G~GKTtLa~~i~~~i~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~~~~ 149 (274)
T cd01133 70 GKIGLFGGAGVGKTVLIMELINNIAKAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARVALT 149 (274)
T ss_pred CEEEEecCCCCChhHHHHHHHHHHHhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHHHH
Confidence 46899999999999999999998 5555 456677776654 345555555432111 01111111 11
Q ss_pred HHHHHHHHH-c-cCeEEEEEcCcccc
Q 001457 248 AAFLSERLK-R-QKRVLIILDDLWGK 271 (1074)
Q Consensus 248 ~~~l~~~l~-~-~k~~LlVlDdv~~~ 271 (1074)
+-.+-+++. + ++.+|+|+||+-..
T Consensus 150 a~~~AEyfr~~~g~~Vl~~~Dsltr~ 175 (274)
T cd01133 150 GLTMAEYFRDEEGQDVLLFIDNIFRF 175 (274)
T ss_pred HHHHHHHHHHhcCCeEEEEEeChhHH
Confidence 223445553 3 89999999998643
No 234
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.00 E-value=0.02 Score=72.00 Aligned_cols=105 Identities=19% Similarity=0.277 Sum_probs=56.5
Q ss_pred CcchHHHHHHHHHHHhcC-------CCceeEEEEEcCCCCcHHHHHHHHHhh-cCCCCeEEEEEecCCcCHHHHHHHHHH
Q 001457 162 LKSALEVIKSVMKLLKDN-------SISINIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKRVQDEIAR 233 (1074)
Q Consensus 162 ~~~r~~~~~~l~~~l~~~-------~~~~~vi~I~G~gG~GKTtLa~~v~~~-~~~F~~~~wv~vs~~~~~~~~~~~i~~ 233 (1074)
+.|.+..++.+...+... .....++.++|+.|+|||++|+.+... ...-...+.++.+.-.+...+ .+
T Consensus 567 v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~~~----~~ 642 (852)
T TIGR03346 567 VVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKHSV----AR 642 (852)
T ss_pred cCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcccchH----HH
Confidence 446667777777766431 112457889999999999999999987 332334455555543221111 11
Q ss_pred HhccCCCcchHHHHHHHHHHHHHccCeEEEEEcCcccc
Q 001457 234 FLNTELEGDVEVLRAAFLSERLKRQKRVLIILDDLWGK 271 (1074)
Q Consensus 234 ~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~ 271 (1074)
-++... +.........+.+.++.....+|+||++...
T Consensus 643 l~g~~~-g~~g~~~~g~l~~~v~~~p~~vlllDeieka 679 (852)
T TIGR03346 643 LIGAPP-GYVGYEEGGQLTEAVRRKPYSVVLFDEVEKA 679 (852)
T ss_pred hcCCCC-CccCcccccHHHHHHHcCCCcEEEEeccccC
Confidence 122111 1000000122334443334458999999753
No 235
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.97 E-value=0.034 Score=54.72 Aligned_cols=39 Identities=33% Similarity=0.482 Sum_probs=30.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh-cCCCCeEEEEEecCCcC
Q 001457 185 IIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPD 223 (1074)
Q Consensus 185 vi~I~G~gG~GKTtLa~~v~~~-~~~F~~~~wv~vs~~~~ 223 (1074)
++.|+|.+|+||||+++.+... ...-..++|++......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchH
Confidence 4789999999999999999888 44446677887766543
No 236
>PRK04132 replication factor C small subunit; Provisional
Probab=95.96 E-value=0.1 Score=64.11 Aligned_cols=149 Identities=9% Similarity=0.078 Sum_probs=89.1
Q ss_pred CCCCcHHHHHHHHHhh--cCCC-CeEEEEEecCCcCHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHccCeEEEEEcC
Q 001457 191 SGGIGKTTLMKQVMKQ--EIPF-DKVIFVRVTQTPDVKRVQDEIARFLNTELEGDVEVLRAAFLSERLKRQKRVLIILDD 267 (1074)
Q Consensus 191 ~gG~GKTtLa~~v~~~--~~~F-~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDd 267 (1074)
+.++||||+|+.++++ ...+ ..++-++.|+...+..+ +++++.+..... +...+.-++|+|+
T Consensus 574 Ph~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rgid~I-R~iIk~~a~~~~--------------~~~~~~KVvIIDE 638 (846)
T PRK04132 574 PTVLHNTTAALALARELFGENWRHNFLELNASDERGINVI-REKVKEFARTKP--------------IGGASFKIIFLDE 638 (846)
T ss_pred CCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcccHHHH-HHHHHHHHhcCC--------------cCCCCCEEEEEEC
Confidence 7899999999999988 3333 24567777765555433 333332211000 0012567999999
Q ss_pred cccc--ccccccccCCCCCCCCeEEEEecCCh-hHHhhc-cCCCeEeCCCCCHHHHHHHHHHhcCCCCCCchhHHHHHHH
Q 001457 268 LWGK--LDLAVVGIPYGEEHKGCKIILTSRFK-EVCDEM-ESTNYVQVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEV 343 (1074)
Q Consensus 268 v~~~--~~~~~~~~~~~~~~~gs~iivTTR~~-~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~i 343 (1074)
++.- +..+.+...+-.....+++|.+|.+. .+.... .....+++.+++.++-.+.+...+.... ..-..+....|
T Consensus 639 aD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Eg-i~i~~e~L~~I 717 (846)
T PRK04132 639 ADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEG-LELTEEGLQAI 717 (846)
T ss_pred cccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcC-CCCCHHHHHHH
Confidence 9864 34444433332223456666655543 333332 2236899999999998888776654211 11225678899
Q ss_pred HHHhCCChHHHH
Q 001457 344 VRQCGKLPNAIV 355 (1074)
Q Consensus 344 ~~~c~glPLai~ 355 (1074)
++.++|-+-.+.
T Consensus 718 a~~s~GDlR~AI 729 (846)
T PRK04132 718 LYIAEGDMRRAI 729 (846)
T ss_pred HHHcCCCHHHHH
Confidence 999999884433
No 237
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=95.94 E-value=0.029 Score=56.82 Aligned_cols=57 Identities=19% Similarity=0.313 Sum_probs=38.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhh-cCCCCeEEEEEecC-CcCHHHHHHHHHHHhccCC
Q 001457 183 INIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQ-TPDVKRVQDEIARFLNTEL 239 (1074)
Q Consensus 183 ~~vi~I~G~gG~GKTtLa~~v~~~-~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~ 239 (1074)
.+||.++|+.|+||||.+.+++.. ..+-..+..++... .....+-++..++.++...
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~ 59 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPF 59 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEE
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhcccc
Confidence 369999999999999877776666 33344566776542 2245566777788887653
No 238
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=95.94 E-value=0.069 Score=66.42 Aligned_cols=173 Identities=12% Similarity=0.141 Sum_probs=87.3
Q ss_pred cccCcchHHHHHHHHHHHhc---C-------C-CceeEEEEEcCCCCcHHHHHHHHHhh-cCCCCeEEEEEecCCcCHHH
Q 001457 159 FVPLKSALEVIKSVMKLLKD---N-------S-ISINIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKR 226 (1074)
Q Consensus 159 ~~~~~~r~~~~~~l~~~l~~---~-------~-~~~~vi~I~G~gG~GKTtLa~~v~~~-~~~F~~~~wv~vs~~~~~~~ 226 (1074)
+..+.|.++.++++.+.+.- . . ...+-|.++|++|+||||+|+.+++. ...| +.++.. .
T Consensus 177 ~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~-----i~i~~~----~ 247 (733)
T TIGR01243 177 YEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYF-----ISINGP----E 247 (733)
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeE-----EEEecH----H
Confidence 33455777766666555421 0 0 12457889999999999999999988 4333 222221 1
Q ss_pred HHHHHHHHhccCCCcchHHHHHHHHHHHHHccCeEEEEEcCccccc-------------cccccccCCCC-CCCCeEEEE
Q 001457 227 VQDEIARFLNTELEGDVEVLRAAFLSERLKRQKRVLIILDDLWGKL-------------DLAVVGIPYGE-EHKGCKIIL 292 (1074)
Q Consensus 227 ~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~-------------~~~~~~~~~~~-~~~gs~iiv 292 (1074)
+. .. ..+.. ......+.+........+|++|+++... ....+...+.. ...+..++|
T Consensus 248 i~----~~----~~g~~-~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vivI 318 (733)
T TIGR01243 248 IM----SK----YYGES-EERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIVI 318 (733)
T ss_pred Hh----cc----cccHH-HHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEEE
Confidence 11 00 01111 1122223333333567899999986421 01112111111 112333444
Q ss_pred -ecCChh-HHhhc----cCCCeEeCCCCCHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhCCCh
Q 001457 293 -TSRFKE-VCDEM----ESTNYVQVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLP 351 (1074)
Q Consensus 293 -TTR~~~-v~~~~----~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~i~~~c~glP 351 (1074)
||.... +...+ .-...+.+...+.++-.+++..........+ ......+++.+.|.-
T Consensus 319 ~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~--d~~l~~la~~t~G~~ 381 (733)
T TIGR01243 319 GATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAE--DVDLDKLAEVTHGFV 381 (733)
T ss_pred eecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCcc--ccCHHHHHHhCCCCC
Confidence 554332 21111 1234677888888888888876553211111 122456777887765
No 239
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=95.92 E-value=0.058 Score=62.05 Aligned_cols=188 Identities=15% Similarity=0.119 Sum_probs=104.4
Q ss_pred CCCcccCcchHHHHHHHHHHHhcCCCceeEEEEEcCCCCcHHHHHHHHHhh--cCCCCeEEEEEecCCcCHHHHHHHHHH
Q 001457 156 TPEFVPLKSALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ--EIPFDKVIFVRVTQTPDVKRVQDEIAR 233 (1074)
Q Consensus 156 ~~~~~~~~~r~~~~~~l~~~l~~~~~~~~vi~I~G~gG~GKTtLa~~v~~~--~~~F~~~~wv~vs~~~~~~~~~~~i~~ 233 (1074)
+..|..+.|.+...+.|...+..+. -..--...|+-|+||||+||-+..- ..+ | .....++.-...+.|..
T Consensus 12 P~~F~evvGQe~v~~~L~nal~~~r-i~hAYlfsG~RGvGKTt~Ari~AkalNC~~-----~-~~~ePC~~C~~Ck~I~~ 84 (515)
T COG2812 12 PKTFDDVVGQEHVVKTLSNALENGR-IAHAYLFSGPRGVGKTTIARILAKALNCEN-----G-PTAEPCGKCISCKEINE 84 (515)
T ss_pred cccHHHhcccHHHHHHHHHHHHhCc-chhhhhhcCCCCcCchhHHHHHHHHhcCCC-----C-CCCCcchhhhhhHhhhc
Confidence 3444455677777777777776554 2345667899999999999988876 111 0 11112222222233322
Q ss_pred HhccC---CCcc--hHHHHHHHHHHHHH----ccCeEEEEEcCcc--ccccccccccCCCCCCCCeEEEEe-cCChhH-H
Q 001457 234 FLNTE---LEGD--VEVLRAAFLSERLK----RQKRVLIILDDLW--GKLDLAVVGIPYGEEHKGCKIILT-SRFKEV-C 300 (1074)
Q Consensus 234 ~l~~~---~~~~--~~~~~~~~l~~~l~----~~k~~LlVlDdv~--~~~~~~~~~~~~~~~~~gs~iivT-TR~~~v-~ 300 (1074)
.-..+ .+.. ...+....+.+... .+|-=+.|+|+|. +...|..+...+-.-...-+.|.. |-...+ .
T Consensus 85 g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~ 164 (515)
T COG2812 85 GSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPN 164 (515)
T ss_pred CCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCch
Confidence 20000 0111 11233344444443 3666788999987 345566554444333345555554 444444 3
Q ss_pred hhccCCCeEeCCCCCHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhCCCh
Q 001457 301 DEMESTNYVQVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLP 351 (1074)
Q Consensus 301 ~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~i~~~c~glP 351 (1074)
......+.|.++.++.++-...+...+.. ......++...-|++..+|..
T Consensus 165 TIlSRcq~f~fkri~~~~I~~~L~~i~~~-E~I~~e~~aL~~ia~~a~Gs~ 214 (515)
T COG2812 165 TILSRCQRFDFKRLDLEEIAKHLAAILDK-EGINIEEDALSLIARAAEGSL 214 (515)
T ss_pred hhhhccccccccCCCHHHHHHHHHHHHHh-cCCccCHHHHHHHHHHcCCCh
Confidence 33445578999999999888887777652 222333455666777777744
No 240
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.92 E-value=0.0051 Score=62.68 Aligned_cols=82 Identities=33% Similarity=0.439 Sum_probs=59.7
Q ss_pred cCCCcEEeeccCCcccCCCCCCCCCccEEEccCCC--CC-CCChhHHhcCCCccEEEecCCccCCCC--CCccCCccCCe
Q 001457 508 LQNCEKLSLMDGNVTALPDQPKCPRLTTLFLQNNP--FA-DIPNAFFEHTREIKNLDLSSTNISSLA--PSLPCLEKLRS 582 (1074)
Q Consensus 508 ~~~~~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~--~~-~~~~~~~~~l~~L~~L~l~~~~~~~lp--~~i~~l~~Lr~ 582 (1074)
+..+..+++.+..++.+...+.+++|+.|.++.|. .. .++.. ..++++|++|++++|++..+. ..+..+.+|..
T Consensus 42 ~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl-~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~ 120 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVL-AEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKS 120 (260)
T ss_pred ccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceeh-hhhCCceeEEeecCCccccccccchhhhhcchhh
Confidence 56778888888888888888899999999999994 22 33332 356799999999999987531 23455566666
Q ss_pred eeccCCCC
Q 001457 583 LHLENTHL 590 (1074)
Q Consensus 583 L~L~~~~l 590 (1074)
|++.+|..
T Consensus 121 Ldl~n~~~ 128 (260)
T KOG2739|consen 121 LDLFNCSV 128 (260)
T ss_pred hhcccCCc
Confidence 66666653
No 241
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=95.90 E-value=0.33 Score=54.14 Aligned_cols=39 Identities=23% Similarity=0.496 Sum_probs=30.7
Q ss_pred HHHHHHHHHhcCC-CceeEEEEEcCCCCcHHHHHHHHHhh
Q 001457 168 VIKSVMKLLKDNS-ISINIIGVYGSGGIGKTTLMKQVMKQ 206 (1074)
Q Consensus 168 ~~~~l~~~l~~~~-~~~~vi~I~G~gG~GKTtLa~~v~~~ 206 (1074)
..+.+.+.+.+.+ ....+|+|.|.=|+||||+.+++.+.
T Consensus 4 ~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~ 43 (325)
T PF07693_consen 4 YAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEE 43 (325)
T ss_pred HHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3455556665543 44789999999999999999999988
No 242
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=95.88 E-value=0.045 Score=58.28 Aligned_cols=128 Identities=15% Similarity=0.122 Sum_probs=68.8
Q ss_pred HHHHHHHhcCCCceeEEEEEcCCCCcHHHHHHHHHhhcCCCCeEEEE---EecCCcCHHHHHHHHH--HHh--ccCCCcc
Q 001457 170 KSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQEIPFDKVIFV---RVTQTPDVKRVQDEIA--RFL--NTELEGD 242 (1074)
Q Consensus 170 ~~l~~~l~~~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~F~~~~wv---~vs~~~~~~~~~~~i~--~~l--~~~~~~~ 242 (1074)
+.++..+.... ...-++|+|..|+|||||.+.+...-......+++ .|.......++...+. .+. +...+..
T Consensus 99 ~~~l~~l~~~~-~~~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~ 177 (270)
T TIGR02858 99 DKLLPYLVRNN-RVLNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVL 177 (270)
T ss_pred HHHHHHHHhCC-CeeEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhccccccccccccccc
Confidence 34444444322 25789999999999999999999872222334443 2211111222221110 010 1100100
Q ss_pred hHHHHHHHHHHHHHccCeEEEEEcCccccccccccccCCCCCCCCeEEEEecCChhHHh
Q 001457 243 VEVLRAAFLSERLKRQKRVLIILDDLWGKLDLAVVGIPYGEEHKGCKIILTSRFKEVCD 301 (1074)
Q Consensus 243 ~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~~~~~~~~~~~gs~iivTTR~~~v~~ 301 (1074)
........+...+....+-++++|.+-..+.+..+...+ ..|..||+||-...+..
T Consensus 178 ~~~~k~~~~~~~i~~~~P~villDE~~~~e~~~~l~~~~---~~G~~vI~ttH~~~~~~ 233 (270)
T TIGR02858 178 DGCPKAEGMMMLIRSMSPDVIVVDEIGREEDVEALLEAL---HAGVSIIATAHGRDVED 233 (270)
T ss_pred ccchHHHHHHHHHHhCCCCEEEEeCCCcHHHHHHHHHHH---hCCCEEEEEechhHHHH
Confidence 111112234444444578899999988776665554433 24778999998766643
No 243
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=95.87 E-value=0.16 Score=61.00 Aligned_cols=104 Identities=17% Similarity=0.210 Sum_probs=58.1
Q ss_pred CcchHHHHHHHHHHHhc-------CCCceeEEEEEcCCCCcHHHHHHHHHhh-cCCCCeEEEEEecCCcCHHHHHHHHHH
Q 001457 162 LKSALEVIKSVMKLLKD-------NSISINIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKRVQDEIAR 233 (1074)
Q Consensus 162 ~~~r~~~~~~l~~~l~~-------~~~~~~vi~I~G~gG~GKTtLa~~v~~~-~~~F~~~~wv~vs~~~~~~~~~~~i~~ 233 (1074)
+.|.++.++.+.+.+.. ....+.+...+|+.|+|||-||+.+... -+.=+..+-++.|+-.... .+.+
T Consensus 493 ViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkH----sVSr 568 (786)
T COG0542 493 VIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKH----SVSR 568 (786)
T ss_pred eeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHH----HHHH
Confidence 44667777777776642 2234678889999999999999998876 2211334444444321111 1222
Q ss_pred HhccCCCcchHHHHHHHHHHHHHccCeE-EEEEcCcccc
Q 001457 234 FLNTELEGDVEVLRAAFLSERLKRQKRV-LIILDDLWGK 271 (1074)
Q Consensus 234 ~l~~~~~~~~~~~~~~~l~~~l~~~k~~-LlVlDdv~~~ 271 (1074)
-+|........++ -..|-+..+ .++| +|.||+|...
T Consensus 569 LIGaPPGYVGyee-GG~LTEaVR-r~PySViLlDEIEKA 605 (786)
T COG0542 569 LIGAPPGYVGYEE-GGQLTEAVR-RKPYSVILLDEIEKA 605 (786)
T ss_pred HhCCCCCCceecc-ccchhHhhh-cCCCeEEEechhhhc
Confidence 3332221111111 234445554 4666 7778999753
No 244
>PRK07667 uridine kinase; Provisional
Probab=95.87 E-value=0.018 Score=58.50 Aligned_cols=38 Identities=21% Similarity=0.401 Sum_probs=30.6
Q ss_pred HHHHHHHHhcCCCceeEEEEEcCCCCcHHHHHHHHHhh
Q 001457 169 IKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ 206 (1074)
Q Consensus 169 ~~~l~~~l~~~~~~~~vi~I~G~gG~GKTtLa~~v~~~ 206 (1074)
++.+++.+........+|+|.|.+|+||||+|+.+...
T Consensus 3 ~~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~ 40 (193)
T PRK07667 3 TNELINIMKKHKENRFILGIDGLSRSGKTTFVANLKEN 40 (193)
T ss_pred HHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 34566666555555689999999999999999999887
No 245
>PRK06835 DNA replication protein DnaC; Validated
Probab=95.86 E-value=0.017 Score=63.41 Aligned_cols=35 Identities=29% Similarity=0.321 Sum_probs=27.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh-cCCCCeEEEEEe
Q 001457 184 NIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRV 218 (1074)
Q Consensus 184 ~vi~I~G~gG~GKTtLa~~v~~~-~~~F~~~~wv~v 218 (1074)
.-+.++|..|+|||+||..+.+. ...-..++|+++
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~ 219 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTA 219 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEH
Confidence 67999999999999999999998 222235667764
No 246
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.85 E-value=0.15 Score=58.11 Aligned_cols=94 Identities=19% Similarity=0.339 Sum_probs=56.1
Q ss_pred cccCcchHHHHHHHHHHH---hcCC-------CceeEEEEEcCCCCcHHHHHHHHHhh-cCCCCeEEEEEecCCcCHHHH
Q 001457 159 FVPLKSALEVIKSVMKLL---KDNS-------ISINIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKRV 227 (1074)
Q Consensus 159 ~~~~~~r~~~~~~l~~~l---~~~~-------~~~~vi~I~G~gG~GKTtLa~~v~~~-~~~F~~~~wv~vs~~~~~~~~ 227 (1074)
|..+.|.+..+.++.+++ ...+ ...+=|.++|++|+|||.||+.+.++ .-.| +.++..
T Consensus 189 f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf-----~~isAp------ 257 (802)
T KOG0733|consen 189 FSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPF-----LSISAP------ 257 (802)
T ss_pred hhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCce-----Eeecch------
Confidence 444556666666555544 3322 12567889999999999999999998 4443 334332
Q ss_pred HHHHHHHhccCCCcchHHHHHHHHHHHHHccCeEEEEEcCccc
Q 001457 228 QDEIARFLNTELEGDVEVLRAAFLSERLKRQKRVLIILDDLWG 270 (1074)
Q Consensus 228 ~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~ 270 (1074)
+|+... .+.++ +.+..+.+.-...-.+++++|+++-
T Consensus 258 --eivSGv----SGESE-kkiRelF~~A~~~aPcivFiDeIDA 293 (802)
T KOG0733|consen 258 --EIVSGV----SGESE-KKIRELFDQAKSNAPCIVFIDEIDA 293 (802)
T ss_pred --hhhccc----CcccH-HHHHHHHHHHhccCCeEEEeecccc
Confidence 122221 12222 2333344444457899999999864
No 247
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.82 E-value=0.053 Score=62.67 Aligned_cols=148 Identities=17% Similarity=0.093 Sum_probs=81.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhh--cCCCCeEEEEEecCCc--CHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHcc
Q 001457 183 INIIGVYGSGGIGKTTLMKQVMKQ--EIPFDKVIFVRVTQTP--DVKRVQDEIARFLNTELEGDVEVLRAAFLSERLKRQ 258 (1074)
Q Consensus 183 ~~vi~I~G~gG~GKTtLa~~v~~~--~~~F~~~~wv~vs~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 258 (1074)
..-|.|.|..|+|||+||+.+++. +...-++.+|+++.-. ....+++.+-. ...+.+. .
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~----------------vfse~~~-~ 493 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLEKIQKFLNN----------------VFSEALW-Y 493 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHHHHHHHHHH----------------HHHHHHh-h
Confidence 457899999999999999999999 6666667777776432 23333322221 1223333 5
Q ss_pred CeEEEEEcCcccc--------ccccc-----------cccCCCCCCCCeE--EEEecCChhHHh-hc----cCCCeEeCC
Q 001457 259 KRVLIILDDLWGK--------LDLAV-----------VGIPYGEEHKGCK--IILTSRFKEVCD-EM----ESTNYVQVE 312 (1074)
Q Consensus 259 k~~LlVlDdv~~~--------~~~~~-----------~~~~~~~~~~gs~--iivTTR~~~v~~-~~----~~~~~~~l~ 312 (1074)
.+-+|||||++.. .+|.. +... ....+.+ +|.|.....-.. .. --+.+..+.
T Consensus 494 ~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~--y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ 571 (952)
T KOG0735|consen 494 APSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKI--YLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALP 571 (952)
T ss_pred CCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHH--HHccCcEEEEEEechhhhhcChhhcCccceEEEEecC
Confidence 7889999998631 12221 1111 1223444 444544333211 11 112466788
Q ss_pred CCCHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhCCC
Q 001457 313 ELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKL 350 (1074)
Q Consensus 313 ~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~i~~~c~gl 350 (1074)
.+...+-.++++............ ....-+..+|+|.
T Consensus 572 ap~~~~R~~IL~~~~s~~~~~~~~-~dLd~ls~~TEGy 608 (952)
T KOG0735|consen 572 APAVTRRKEILTTIFSKNLSDITM-DDLDFLSVKTEGY 608 (952)
T ss_pred CcchhHHHHHHHHHHHhhhhhhhh-HHHHHHHHhcCCc
Confidence 888888777766555311111111 2222277778773
No 248
>CHL00095 clpC Clp protease ATP binding subunit
Probab=95.82 E-value=0.029 Score=70.44 Aligned_cols=105 Identities=18% Similarity=0.256 Sum_probs=55.5
Q ss_pred CcchHHHHHHHHHHHhc-------CCCceeEEEEEcCCCCcHHHHHHHHHhh-cCCCCeEEEEEecCCcCHHHHHHHHHH
Q 001457 162 LKSALEVIKSVMKLLKD-------NSISINIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKRVQDEIAR 233 (1074)
Q Consensus 162 ~~~r~~~~~~l~~~l~~-------~~~~~~vi~I~G~gG~GKTtLa~~v~~~-~~~F~~~~wv~vs~~~~~~~~~~~i~~ 233 (1074)
+.|.++.++.+...+.. ......++.++|+.|+|||+||+.+.+. -..-...+-++.+.-.+...+ .+
T Consensus 511 v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~----~~ 586 (821)
T CHL00095 511 IIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTV----SK 586 (821)
T ss_pred CcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccH----HH
Confidence 44667777777766642 1112456779999999999999999876 222233444444432221111 11
Q ss_pred HhccCCCcchHHHHHHHHHHHHHccCeEEEEEcCcccc
Q 001457 234 FLNTELEGDVEVLRAAFLSERLKRQKRVLIILDDLWGK 271 (1074)
Q Consensus 234 ~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~ 271 (1074)
-++... +.........+.+.+......+|+||++...
T Consensus 587 l~g~~~-gyvg~~~~~~l~~~~~~~p~~VvllDeieka 623 (821)
T CHL00095 587 LIGSPP-GYVGYNEGGQLTEAVRKKPYTVVLFDEIEKA 623 (821)
T ss_pred hcCCCC-cccCcCccchHHHHHHhCCCeEEEECChhhC
Confidence 122111 0000011123444554334468899999753
No 249
>PRK06921 hypothetical protein; Provisional
Probab=95.75 E-value=0.033 Score=59.51 Aligned_cols=36 Identities=25% Similarity=0.313 Sum_probs=28.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhh-cCC-CCeEEEEEe
Q 001457 183 INIIGVYGSGGIGKTTLMKQVMKQ-EIP-FDKVIFVRV 218 (1074)
Q Consensus 183 ~~vi~I~G~gG~GKTtLa~~v~~~-~~~-F~~~~wv~v 218 (1074)
...+.++|..|+|||+||..+.+. ... -..++|++.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~ 154 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPF 154 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEH
Confidence 467899999999999999999998 332 345677764
No 250
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.74 E-value=0.032 Score=58.31 Aligned_cols=24 Identities=33% Similarity=0.486 Sum_probs=23.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhh
Q 001457 183 INIIGVYGSGGIGKTTLMKQVMKQ 206 (1074)
Q Consensus 183 ~~vi~I~G~gG~GKTtLa~~v~~~ 206 (1074)
.|+|.++|++|.|||+|.+.++++
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQk 200 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQK 200 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHh
Confidence 589999999999999999999998
No 251
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=95.73 E-value=0.075 Score=58.08 Aligned_cols=54 Identities=24% Similarity=0.274 Sum_probs=41.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhh---c----CCCCeEEEEEecCCcCHHHHHHHHHHHhcc
Q 001457 183 INIIGVYGSGGIGKTTLMKQVMKQ---E----IPFDKVIFVRVTQTPDVKRVQDEIARFLNT 237 (1074)
Q Consensus 183 ~~vi~I~G~gG~GKTtLa~~v~~~---~----~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~ 237 (1074)
-+++-|+|.+|+|||+++.+++-. . ..=..++||+....|+..++. ++++.++.
T Consensus 96 G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~-~~a~~~g~ 156 (313)
T TIGR02238 96 MSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIR-AIAERFGV 156 (313)
T ss_pred CeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHH-HHHHHcCC
Confidence 579999999999999999886543 1 122478999999999888875 45666654
No 252
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=95.72 E-value=0.052 Score=52.63 Aligned_cols=33 Identities=33% Similarity=0.521 Sum_probs=26.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhcCCCCeEEEE
Q 001457 184 NIIGVYGSGGIGKTTLMKQVMKQEIPFDKVIFV 216 (1074)
Q Consensus 184 ~vi~I~G~gG~GKTtLa~~v~~~~~~F~~~~wv 216 (1074)
..+.++|++|.||||+.+.+|...+.=.+.+|+
T Consensus 29 ef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~ 61 (223)
T COG2884 29 EFVFLTGPSGAGKSTLLKLIYGEERPTRGKILV 61 (223)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhhcCCCceEEE
Confidence 489999999999999999999883333445555
No 253
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=95.71 E-value=0.34 Score=53.57 Aligned_cols=175 Identities=11% Similarity=0.055 Sum_probs=92.9
Q ss_pred HHHHHHHHHHhcCCCceeEEEEEcCCCCcHHHHHHHHHhh---cCCCCeEEEEEecCCcCHHHHHHHHHHHhccCC----
Q 001457 167 EVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ---EIPFDKVIFVRVTQTPDVKRVQDEIARFLNTEL---- 239 (1074)
Q Consensus 167 ~~~~~l~~~l~~~~~~~~vi~I~G~gG~GKTtLa~~v~~~---~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~---- 239 (1074)
...+.+...+..+. -...+.+.|+.|+||+|+|..+... ....+.. .++.-.-.+.+...-..+.
T Consensus 9 ~~~~~l~~~~~~~r-l~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~-------~Cg~C~sC~~~~~g~HPD~~~i~ 80 (334)
T PRK07993 9 PDYEQLVGSYQAGR-GHHALLIQALPGMGDDALIYALSRWLMCQQPQGHK-------SCGHCRGCQLMQAGTHPDYYTLT 80 (334)
T ss_pred HHHHHHHHHHHcCC-cceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCC-------CCCCCHHHHHHHcCCCCCEEEEe
Confidence 34556666665554 2457789999999999999988776 1111100 0000000011100000000
Q ss_pred -C---cchHHHHHHHHHHHHH----ccCeEEEEEcCcccc--ccccccccCCCCCCCCeEEEEecCCh-hHHhh-ccCCC
Q 001457 240 -E---GDVEVLRAAFLSERLK----RQKRVLIILDDLWGK--LDLAVVGIPYGEEHKGCKIILTSRFK-EVCDE-MESTN 307 (1074)
Q Consensus 240 -~---~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~~~~~~~~~~~gs~iivTTR~~-~v~~~-~~~~~ 307 (1074)
+ .....+.+..+.+.+. .+++=++|+|+++.- ..-..+...+-.-..++-+|.+|.+. .+... .+...
T Consensus 81 p~~~~~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRCq 160 (334)
T PRK07993 81 PEKGKSSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRCR 160 (334)
T ss_pred cccccccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhccc
Confidence 0 0011222233333332 367778999998753 23333322222223466666666654 44433 23346
Q ss_pred eEeCCCCCHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhCCChHHHH
Q 001457 308 YVQVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLPNAIV 355 (1074)
Q Consensus 308 ~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~i~~~c~glPLai~ 355 (1074)
.+.+.++++++..+.+.+..+ .+ .+.+..++..++|.|..+.
T Consensus 161 ~~~~~~~~~~~~~~~L~~~~~----~~--~~~a~~~~~la~G~~~~Al 202 (334)
T PRK07993 161 LHYLAPPPEQYALTWLSREVT----MS--QDALLAALRLSAGAPGAAL 202 (334)
T ss_pred cccCCCCCHHHHHHHHHHccC----CC--HHHHHHHHHHcCCCHHHHH
Confidence 789999999999887765432 11 2336788999999996443
No 254
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.66 E-value=0.0035 Score=63.47 Aligned_cols=83 Identities=24% Similarity=0.343 Sum_probs=43.4
Q ss_pred hcCCCccEEEecCCccC-----CCCCCccCCccCCeeeccCCCCC---C---------CccccCCCCccEEEeeCCCCc-
Q 001457 552 EHTREIKNLDLSSTNIS-----SLAPSLPCLEKLRSLHLENTHLN---D---------ASLIREFGELEVLILKGSRIV- 613 (1074)
Q Consensus 552 ~~l~~L~~L~l~~~~~~-----~lp~~i~~l~~Lr~L~L~~~~l~---~---------~~~i~~l~~L~~L~L~~~~i~- 613 (1074)
..+..+..++||+|.|. .+...|.+-++|+..++++-... + .+.+-+|++|++.+|+.|-+.
T Consensus 27 ~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~ 106 (388)
T COG5238 27 EMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS 106 (388)
T ss_pred HhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc
Confidence 34667778888888765 22234455567777777654311 1 122344555555555555433
Q ss_pred ccCc----cccCCCCCCEEeCCCCc
Q 001457 614 ELPN----GIGTVSNLKLLDLSNNL 634 (1074)
Q Consensus 614 ~lp~----~i~~L~~L~~L~l~~~~ 634 (1074)
+.|+ .|..-+.|.||.+++|.
T Consensus 107 ~~~e~L~d~is~~t~l~HL~l~NnG 131 (388)
T COG5238 107 EFPEELGDLISSSTDLVHLKLNNNG 131 (388)
T ss_pred ccchHHHHHHhcCCCceeEEeecCC
Confidence 2222 23444555555555543
No 255
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=95.63 E-value=0.021 Score=56.96 Aligned_cols=71 Identities=30% Similarity=0.353 Sum_probs=42.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhh--cCCCCeEEEEEecCCcCHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHccCe
Q 001457 183 INIIGVYGSGGIGKTTLMKQVMKQ--EIPFDKVIFVRVTQTPDVKRVQDEIARFLNTELEGDVEVLRAAFLSERLKRQKR 260 (1074)
Q Consensus 183 ~~vi~I~G~gG~GKTtLa~~v~~~--~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~ 260 (1074)
..-+.++|..|+|||.||..+.+. ... ..+.|+++ .+++..+-.. ..... ...+.+.+. +-
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g-~~v~f~~~------~~L~~~l~~~----~~~~~----~~~~~~~l~--~~ 109 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKG-YSVLFITA------SDLLDELKQS----RSDGS----YEELLKRLK--RV 109 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT---EEEEEH------HHHHHHHHCC----HCCTT----HCHHHHHHH--TS
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCC-cceeEeec------Cceecccccc----ccccc----hhhhcCccc--cc
Confidence 456999999999999999999988 433 34566653 3444444321 11111 122334443 45
Q ss_pred EEEEEcCccc
Q 001457 261 VLIILDDLWG 270 (1074)
Q Consensus 261 ~LlVlDdv~~ 270 (1074)
=||||||+-.
T Consensus 110 dlLilDDlG~ 119 (178)
T PF01695_consen 110 DLLILDDLGY 119 (178)
T ss_dssp SCEEEETCTS
T ss_pred cEecccccce
Confidence 6888999864
No 256
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=95.63 E-value=0.059 Score=60.18 Aligned_cols=134 Identities=15% Similarity=0.155 Sum_probs=74.7
Q ss_pred chHHHHHHHHHHHhcCCCceeEEEEEcCCCCcHHHHHHHHHhh-c--C-------------------CCCeEEEEEecCC
Q 001457 164 SALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ-E--I-------------------PFDKVIFVRVTQT 221 (1074)
Q Consensus 164 ~r~~~~~~l~~~l~~~~~~~~vi~I~G~gG~GKTtLa~~v~~~-~--~-------------------~F~~~~wv~vs~~ 221 (1074)
+.+....++..+..........+.++|++|+||||+|..+.+. . . ....+..++-++.
T Consensus 5 ~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~ 84 (325)
T COG0470 5 PWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDL 84 (325)
T ss_pred cchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEeccccc
Confidence 4456666777777644322345999999999999999999887 1 1 1233445554444
Q ss_pred cC---HHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHccCeEEEEEcCcccc--ccccccccCCCCCCCCeEEEEecCC
Q 001457 222 PD---VKRVQDEIARFLNTELEGDVEVLRAAFLSERLKRQKRVLIILDDLWGK--LDLAVVGIPYGEEHKGCKIILTSRF 296 (1074)
Q Consensus 222 ~~---~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~--~~~~~~~~~~~~~~~gs~iivTTR~ 296 (1074)
.. ..+..+++.+....... .++.-++++|+++.- +.-..+...+-.....+++|++|..
T Consensus 85 ~~~~i~~~~vr~~~~~~~~~~~----------------~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~~n~ 148 (325)
T COG0470 85 RKIDIIVEQVRELAEFLSESPL----------------EGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILITND 148 (325)
T ss_pred CCCcchHHHHHHHHHHhccCCC----------------CCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEEcCC
Confidence 33 23333444433321110 267889999999864 2223332222233456778877763
Q ss_pred -hhHHhhcc-CCCeEeCCC
Q 001457 297 -KEVCDEME-STNYVQVEE 313 (1074)
Q Consensus 297 -~~v~~~~~-~~~~~~l~~ 313 (1074)
..+...+. ....+++.+
T Consensus 149 ~~~il~tI~SRc~~i~f~~ 167 (325)
T COG0470 149 PSKILPTIRSRCQRIRFKP 167 (325)
T ss_pred hhhccchhhhcceeeecCC
Confidence 33332222 224566666
No 257
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=95.61 E-value=0.46 Score=52.45 Aligned_cols=91 Identities=12% Similarity=0.111 Sum_probs=55.3
Q ss_pred cCeEEEEEcCcccc--ccccccccCCCCCCCCeEEEEecCC-hhHHhhc-cCCCeEeCCCCCHHHHHHHHHHhcCCCCCC
Q 001457 258 QKRVLIILDDLWGK--LDLAVVGIPYGEEHKGCKIILTSRF-KEVCDEM-ESTNYVQVEELTDEDRLILFKKKAGLPEGT 333 (1074)
Q Consensus 258 ~k~~LlVlDdv~~~--~~~~~~~~~~~~~~~gs~iivTTR~-~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~ 333 (1074)
+++=++|+|+++.- ...+.+...+-.-.+++.+|.+|.+ ..+...+ .....+.+.+++.++..+.+.+. + .
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~-~--~-- 205 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQ-G--V-- 205 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHc-C--C--
Confidence 56668888998753 3344443333333346655555554 4444332 33368999999999999888765 2 1
Q ss_pred chhHHHHHHHHHHhCCChHHHHHH
Q 001457 334 KAFDRAAEEVVRQCGKLPNAIVII 357 (1074)
Q Consensus 334 ~~~~~~~~~i~~~c~glPLai~~~ 357 (1074)
+. ...++..++|.|..+..+
T Consensus 206 ~~----~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 206 AD----ADALLAEAGGAPLAALAL 225 (342)
T ss_pred Ch----HHHHHHHcCCCHHHHHHH
Confidence 11 123577889999755444
No 258
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=95.59 E-value=0.1 Score=55.39 Aligned_cols=86 Identities=27% Similarity=0.252 Sum_probs=53.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhh---c----CCCCeEEEEEecCCcCHHHHHHHHHHHhccCCC-----------cc--
Q 001457 183 INIIGVYGSGGIGKTTLMKQVMKQ---E----IPFDKVIFVRVTQTPDVKRVQDEIARFLNTELE-----------GD-- 242 (1074)
Q Consensus 183 ~~vi~I~G~gG~GKTtLa~~v~~~---~----~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~-----------~~-- 242 (1074)
-.|+=|+|.+|+|||.|+-+++-. . +.=..++|++....|...++. +|++..+.+.+ ..
T Consensus 38 g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~~~~~~~l~~I~v~~~~~~~ 116 (256)
T PF08423_consen 38 GSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFGLDPEEILDNIFVIRVFDLE 116 (256)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTTS-HHHHHHTEEEEE-SSHH
T ss_pred CcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhccccccchhhhceeeeecCCHH
Confidence 359999999999999999877644 1 122468999999999988875 46665432211 00
Q ss_pred hHHHHHHHHHHHHHccCeEEEEEcCcc
Q 001457 243 VEVLRAAFLSERLKRQKRVLIILDDLW 269 (1074)
Q Consensus 243 ~~~~~~~~l~~~l~~~k~~LlVlDdv~ 269 (1074)
.-......+...+...+=-|||+|.+-
T Consensus 117 ~l~~~L~~l~~~l~~~~ikLIVIDSIa 143 (256)
T PF08423_consen 117 ELLELLEQLPKLLSESKIKLIVIDSIA 143 (256)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETSS
T ss_pred HHHHHHHHHHhhccccceEEEEecchH
Confidence 111222333344444566788888874
No 259
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=95.59 E-value=0.051 Score=58.99 Aligned_cols=29 Identities=31% Similarity=0.454 Sum_probs=25.3
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHhh-cCCC
Q 001457 182 SINIIGVYGSGGIGKTTLMKQVMKQ-EIPF 210 (1074)
Q Consensus 182 ~~~vi~I~G~gG~GKTtLa~~v~~~-~~~F 210 (1074)
..+.++|+|++|+|||.+|+.+++. ...|
T Consensus 147 ~PlgllL~GPPGcGKTllAraiA~elg~~~ 176 (413)
T PLN00020 147 VPLILGIWGGKGQGKSFQCELVFKKMGIEP 176 (413)
T ss_pred CCeEEEeeCCCCCCHHHHHHHHHHHcCCCe
Confidence 3689999999999999999999999 4443
No 260
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=95.59 E-value=0.18 Score=59.81 Aligned_cols=129 Identities=21% Similarity=0.187 Sum_probs=73.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhh-cCCCCeEEEEEecCCcCHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHccCeE
Q 001457 183 INIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKRVQDEIARFLNTELEGDVEVLRAAFLSERLKRQKRV 261 (1074)
Q Consensus 183 ~~vi~I~G~gG~GKTtLa~~v~~~-~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~ 261 (1074)
.+.+-++|++|.|||.||++|.+. +.+|-.+.+-.+.. ..-+.++... ..+...-+....+
T Consensus 276 ~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~s-----------------k~vGesek~i-r~~F~~A~~~~p~ 337 (494)
T COG0464 276 PKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLS-----------------KWVGESEKNI-RELFEKARKLAPS 337 (494)
T ss_pred CCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhc-----------------cccchHHHHH-HHHHHHHHcCCCc
Confidence 568999999999999999999997 56653332211111 1111222222 2222222246889
Q ss_pred EEEEcCccccccc-------------cccccCCC--CCCCCeEEEEecCChhHHh-hc----cCCCeEeCCCCCHHHHHH
Q 001457 262 LIILDDLWGKLDL-------------AVVGIPYG--EEHKGCKIILTSRFKEVCD-EM----ESTNYVQVEELTDEDRLI 321 (1074)
Q Consensus 262 LlVlDdv~~~~~~-------------~~~~~~~~--~~~~gs~iivTTR~~~v~~-~~----~~~~~~~l~~L~~~~~~~ 321 (1074)
.|.+|+++..-.+ .++...+. ....+..||-||-...... .+ .-+..+.+..-+.++..+
T Consensus 338 iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~ 417 (494)
T COG0464 338 IIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLE 417 (494)
T ss_pred EEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCHHHHHH
Confidence 9999998753211 11222221 1222334555555444322 11 224578899999999999
Q ss_pred HHHHhcCC
Q 001457 322 LFKKKAGL 329 (1074)
Q Consensus 322 lf~~~a~~ 329 (1074)
.|+.+..+
T Consensus 418 i~~~~~~~ 425 (494)
T COG0464 418 IFKIHLRD 425 (494)
T ss_pred HHHHHhcc
Confidence 99998863
No 261
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.58 E-value=0.037 Score=64.22 Aligned_cols=74 Identities=23% Similarity=0.364 Sum_probs=51.5
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHhhcCCCCeEEEEEecCCcCHHHHHHHHHHHhccCCCcchHHHHHHHHHHHH-HccCe
Q 001457 182 SINIIGVYGSGGIGKTTLMKQVMKQEIPFDKVIFVRVTQTPDVKRVQDEIARFLNTELEGDVEVLRAAFLSERL-KRQKR 260 (1074)
Q Consensus 182 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l-~~~k~ 260 (1074)
.-+|.-++|++|+||||||+-|+.+.++ .++=|+.|+.-+...+-..|...+... ..+ ..++.
T Consensus 325 ~kKilLL~GppGlGKTTLAHViAkqaGY--sVvEINASDeRt~~~v~~kI~~avq~~--------------s~l~adsrP 388 (877)
T KOG1969|consen 325 PKKILLLCGPPGLGKTTLAHVIAKQAGY--SVVEINASDERTAPMVKEKIENAVQNH--------------SVLDADSRP 388 (877)
T ss_pred ccceEEeecCCCCChhHHHHHHHHhcCc--eEEEecccccccHHHHHHHHHHHHhhc--------------cccccCCCc
Confidence 4689999999999999999999987322 366788888777766665555443211 011 02577
Q ss_pred EEEEEcCcccc
Q 001457 261 VLIILDDLWGK 271 (1074)
Q Consensus 261 ~LlVlDdv~~~ 271 (1074)
.-+|+|.++-.
T Consensus 389 ~CLViDEIDGa 399 (877)
T KOG1969|consen 389 VCLVIDEIDGA 399 (877)
T ss_pred ceEEEecccCC
Confidence 77888988753
No 262
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.53 E-value=0.016 Score=54.38 Aligned_cols=30 Identities=30% Similarity=0.424 Sum_probs=24.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhh--cCCCCe
Q 001457 183 INIIGVYGSGGIGKTTLMKQVMKQ--EIPFDK 212 (1074)
Q Consensus 183 ~~vi~I~G~gG~GKTtLa~~v~~~--~~~F~~ 212 (1074)
..-|+|.|++|+||||+++.+.+. ...|..
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kv 36 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLREKGYKV 36 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHhcCcee
Confidence 346899999999999999999988 444653
No 263
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=95.52 E-value=0.1 Score=54.39 Aligned_cols=41 Identities=24% Similarity=0.323 Sum_probs=32.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhh-cCCCCeEEEEEecCCcC
Q 001457 183 INIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPD 223 (1074)
Q Consensus 183 ~~vi~I~G~gG~GKTtLa~~v~~~-~~~F~~~~wv~vs~~~~ 223 (1074)
-.++.|.|.+|+||||+|.++... ...-..++|++....+.
T Consensus 19 g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e~~~~ 60 (218)
T cd01394 19 GTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTEGLSS 60 (218)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECCCCCH
Confidence 579999999999999999998877 33345678887655553
No 264
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.51 E-value=0.00064 Score=68.90 Aligned_cols=80 Identities=28% Similarity=0.350 Sum_probs=67.8
Q ss_pred cCCCcEEeeccCCcccCCCCCCCCCccEEEccCCCCCCCChhHHhcCCCccEEEecCCccCCCCC--CccCCccCCeeec
Q 001457 508 LQNCEKLSLMDGNVTALPDQPKCPRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSLAP--SLPCLEKLRSLHL 585 (1074)
Q Consensus 508 ~~~~~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~--~i~~l~~Lr~L~L 585 (1074)
+.+++.|+..++.++.+.--.+++.|++|.|+-|.++.+.+ |..|++|+.|.|..|.|..+-+ .+.++++||.|.|
T Consensus 18 l~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HHHhhhhcccCCCccHHHHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence 45667788888888887766789999999999999998876 7899999999999999887754 5678899999999
Q ss_pred cCCC
Q 001457 586 ENTH 589 (1074)
Q Consensus 586 ~~~~ 589 (1074)
..|.
T Consensus 96 ~ENP 99 (388)
T KOG2123|consen 96 DENP 99 (388)
T ss_pred ccCC
Confidence 8876
No 265
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=95.50 E-value=0.015 Score=63.59 Aligned_cols=45 Identities=20% Similarity=0.282 Sum_probs=36.4
Q ss_pred CcchHHHHHHHHHHHhcC----CCceeEEEEEcCCCCcHHHHHHHHHhh
Q 001457 162 LKSALEVIKSVMKLLKDN----SISINIIGVYGSGGIGKTTLMKQVMKQ 206 (1074)
Q Consensus 162 ~~~r~~~~~~l~~~l~~~----~~~~~vi~I~G~gG~GKTtLa~~v~~~ 206 (1074)
+.|.++.++++++++... +...+++.++|++|+||||||+.+.+.
T Consensus 53 ~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~ 101 (361)
T smart00763 53 FFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRG 101 (361)
T ss_pred ccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 556777888888887542 224689999999999999999999887
No 266
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=95.46 E-value=0.16 Score=48.26 Aligned_cols=112 Identities=12% Similarity=0.118 Sum_probs=75.4
Q ss_pred hHHHHHHHhHhhHHHHhhhhhhhhHHHhhchhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHH
Q 001457 5 WVLSTLSNTAGSGLSCILERLWNPVERQIIYLVRYGSNIGAFRERARDLEAKKTDVLRFVKDAEDRGEEIKAEVRNWQVQ 84 (1074)
Q Consensus 5 mae~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~i~~~l~~a~~~~~~~~~~~~~Wl~~ 84 (1074)
.||-+++++++++++.+...+.....+ ... .+.-+++|.+++..|.-++++.+.-+...+..-+.=+++
T Consensus 2 ~~eL~~gaalG~~~~eLlk~v~~~~~k----~~~-------fk~~l~~L~sTl~~i~P~i~eI~~~~~eld~~~~ee~e~ 70 (147)
T PF05659_consen 2 IAELVGGAALGAVFGELLKAVIDASKK----SLS-------FKSILKRLESTLESIIPIIKEIDKLNVELDRPRQEEIER 70 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHh-------hhhHHHHHHHHHHHhhhHHHHHHHHhhhcCCchhHHHHH
Confidence 467777777788877777766653322 222 345566777777777777777666544344444667888
Q ss_pred HHHHHHHHHHHHHHhhcccCccccccCChhhhhhhcHHHHHHHHHHHHH
Q 001457 85 TIQYEMDVELLEEKIQKSEGRCHTWHLDWRKRHQLSRVATKKTVEIIEH 133 (1074)
Q Consensus 85 ~~~~~~d~ed~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~ 133 (1074)
+.+...+++++++.+..-.+ .++...+..+++|+++.+.+...
T Consensus 71 L~~~L~~g~~LV~k~sk~~r------~n~~kk~~y~~Ki~~le~~l~~f 113 (147)
T PF05659_consen 71 LKELLEKGKELVEKCSKVRR------WNLYKKPRYARKIEELEESLRRF 113 (147)
T ss_pred HHHHHHHHHHHHHHhccccH------HHHHhhHhHHHHHHHHHHHHHHH
Confidence 99999999999987754322 23455667788888888887765
No 267
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=95.46 E-value=0.09 Score=63.89 Aligned_cols=127 Identities=18% Similarity=0.230 Sum_probs=69.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh-cCCCCeEEEEEecCCcCHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHccCeEE
Q 001457 184 NIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKRVQDEIARFLNTELEGDVEVLRAAFLSERLKRQKRVL 262 (1074)
Q Consensus 184 ~vi~I~G~gG~GKTtLa~~v~~~-~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~L 262 (1074)
+-|.++|++|+||||+|+.+.+. ...| +.++.. .+.. +. .+ .... ....+.+......+++
T Consensus 186 ~gill~G~~G~GKt~~~~~~a~~~~~~f-----~~is~~----~~~~-~~--~g-----~~~~-~~~~~f~~a~~~~P~I 247 (644)
T PRK10733 186 KGVLMVGPPGTGKTLLAKAIAGEAKVPF-----FTISGS----DFVE-MF--VG-----VGAS-RVRDMFEQAKKAAPCI 247 (644)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHcCCCE-----EEEehH----HhHH-hh--hc-----ccHH-HHHHHHHHHHhcCCcE
Confidence 35899999999999999999987 4443 222221 1110 00 00 0111 1112222223357789
Q ss_pred EEEcCccccc------------cc----cccccCCC--CCCCCeEEEEecCChhHHhh-c----cCCCeEeCCCCCHHHH
Q 001457 263 IILDDLWGKL------------DL----AVVGIPYG--EEHKGCKIILTSRFKEVCDE-M----ESTNYVQVEELTDEDR 319 (1074)
Q Consensus 263 lVlDdv~~~~------------~~----~~~~~~~~--~~~~gs~iivTTR~~~v~~~-~----~~~~~~~l~~L~~~~~ 319 (1074)
|++|+++... .. ..+...+. ....+.-||.||...+.... . .-++.+.+..-+.++-
T Consensus 248 ifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R 327 (644)
T PRK10733 248 IFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGR 327 (644)
T ss_pred EEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHH
Confidence 9999986531 01 11111111 11234556667876665221 1 2246778888888888
Q ss_pred HHHHHHhcC
Q 001457 320 LILFKKKAG 328 (1074)
Q Consensus 320 ~~lf~~~a~ 328 (1074)
.+++..+..
T Consensus 328 ~~Il~~~~~ 336 (644)
T PRK10733 328 EQILKVHMR 336 (644)
T ss_pred HHHHHHHhh
Confidence 888887775
No 268
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.45 E-value=0.11 Score=57.35 Aligned_cols=100 Identities=23% Similarity=0.207 Sum_probs=53.6
Q ss_pred HHHHHHHHHHhcCC--CceeEEEEEcCCCCcHHH-HHHHHHhh--cCCCCeEEEEEecCCcC--HHHHHHHHHHHhccCC
Q 001457 167 EVIKSVMKLLKDNS--ISINIIGVYGSGGIGKTT-LMKQVMKQ--EIPFDKVIFVRVTQTPD--VKRVQDEIARFLNTEL 239 (1074)
Q Consensus 167 ~~~~~l~~~l~~~~--~~~~vi~I~G~gG~GKTt-La~~v~~~--~~~F~~~~wv~vs~~~~--~~~~~~~i~~~l~~~~ 239 (1074)
+....+..++.++- ..-+||.+||+.|+|||| ||+..+.- ...=..+..|+.. +|. ..+-++.-++-++.+.
T Consensus 185 ~~l~~~~~~~~~~~~~~~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtD-tYRIGA~EQLk~Ya~im~vp~ 263 (407)
T COG1419 185 EKLRKLLLSLIENLIVEQKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTD-TYRIGAVEQLKTYADIMGVPL 263 (407)
T ss_pred HHHHHHHHhhccccccccCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEec-cchhhHHHHHHHHHHHhCCce
Confidence 44455555555441 126899999999999985 77776655 2333456677653 332 3333444555566555
Q ss_pred CcchHHHHHHHHHHHHHccCeEEEEEcCcc
Q 001457 240 EGDVEVLRAAFLSERLKRQKRVLIILDDLW 269 (1074)
Q Consensus 240 ~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~ 269 (1074)
....+......-...++ ++ =+|.+|-+-
T Consensus 264 ~vv~~~~el~~ai~~l~-~~-d~ILVDTaG 291 (407)
T COG1419 264 EVVYSPKELAEAIEALR-DC-DVILVDTAG 291 (407)
T ss_pred EEecCHHHHHHHHHHhh-cC-CEEEEeCCC
Confidence 43333222222233332 23 345556543
No 269
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.42 E-value=0.28 Score=50.82 Aligned_cols=71 Identities=24% Similarity=0.270 Sum_probs=48.3
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHhh-cCCCCeEEEEEecCCcCHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHccCe
Q 001457 182 SINIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKRVQDEIARFLNTELEGDVEVLRAAFLSERLKRQKR 260 (1074)
Q Consensus 182 ~~~vi~I~G~gG~GKTtLa~~v~~~-~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~ 260 (1074)
..+-|.++|++|.||+.||++|... .. .|.+||...-+.+-+ | ..+.+...|.+.-+++|.
T Consensus 165 PwrgiLLyGPPGTGKSYLAKAVATEAnS-----TFFSvSSSDLvSKWm-------G------ESEkLVknLFemARe~kP 226 (439)
T KOG0739|consen 165 PWRGILLYGPPGTGKSYLAKAVATEANS-----TFFSVSSSDLVSKWM-------G------ESEKLVKNLFEMARENKP 226 (439)
T ss_pred cceeEEEeCCCCCcHHHHHHHHHhhcCC-----ceEEeehHHHHHHHh-------c------cHHHHHHHHHHHHHhcCC
Confidence 3678999999999999999999988 32 345666542222211 1 123445555555556899
Q ss_pred EEEEEcCccc
Q 001457 261 VLIILDDLWG 270 (1074)
Q Consensus 261 ~LlVlDdv~~ 270 (1074)
-+|.+|.|+.
T Consensus 227 SIIFiDEiDs 236 (439)
T KOG0739|consen 227 SIIFIDEIDS 236 (439)
T ss_pred cEEEeehhhh
Confidence 9999999874
No 270
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=95.40 E-value=0.052 Score=58.74 Aligned_cols=83 Identities=19% Similarity=0.257 Sum_probs=52.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhh-cCCCCeEEEEEecCCcCHHHHHHHHHHHhccCCC------cchHHHHHHHHHHHH
Q 001457 183 INIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKRVQDEIARFLNTELE------GDVEVLRAAFLSERL 255 (1074)
Q Consensus 183 ~~vi~I~G~gG~GKTtLa~~v~~~-~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~------~~~~~~~~~~l~~~l 255 (1074)
-+++-|+|..|+||||||..+... .+.-..++||+....++... ++.+|.+.+ ....++....+.+.+
T Consensus 53 G~ivEi~G~~ssGKttLaL~~ia~~q~~g~~~a~ID~e~~ld~~~-----a~~lGvdl~rllv~~P~~~E~al~~~e~li 127 (322)
T PF00154_consen 53 GRIVEIYGPESSGKTTLALHAIAEAQKQGGICAFIDAEHALDPEY-----AESLGVDLDRLLVVQPDTGEQALWIAEQLI 127 (322)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHTT-EEEEEESSS---HHH-----HHHTT--GGGEEEEE-SSHHHHHHHHHHHH
T ss_pred CceEEEeCCCCCchhhhHHHHHHhhhcccceeEEecCcccchhhH-----HHhcCccccceEEecCCcHHHHHHHHHHHh
Confidence 469999999999999999998877 44456789999888776644 344444322 122233444555555
Q ss_pred HccCeEEEEEcCccc
Q 001457 256 KRQKRVLIILDDLWG 270 (1074)
Q Consensus 256 ~~~k~~LlVlDdv~~ 270 (1074)
+.+.--++|+|-|-.
T Consensus 128 rsg~~~lVVvDSv~a 142 (322)
T PF00154_consen 128 RSGAVDLVVVDSVAA 142 (322)
T ss_dssp HTTSESEEEEE-CTT
T ss_pred hcccccEEEEecCcc
Confidence 666667899998754
No 271
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=95.34 E-value=0.14 Score=56.47 Aligned_cols=56 Identities=21% Similarity=0.199 Sum_probs=42.1
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHhh---c---C-CCCeEEEEEecCCcCHHHHHHHHHHHhccC
Q 001457 182 SINIIGVYGSGGIGKTTLMKQVMKQ---E---I-PFDKVIFVRVTQTPDVKRVQDEIARFLNTE 238 (1074)
Q Consensus 182 ~~~vi~I~G~gG~GKTtLa~~v~~~---~---~-~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~ 238 (1074)
.-+++-|+|.+|+|||+|+.+++-. . . .-..++||+....|+..++.+ +++.++.+
T Consensus 125 ~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~d 187 (344)
T PLN03187 125 TRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGMD 187 (344)
T ss_pred CCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCCC
Confidence 3578899999999999999887533 1 1 125789999999999888754 56666543
No 272
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=95.33 E-value=0.05 Score=57.57 Aligned_cols=73 Identities=22% Similarity=0.255 Sum_probs=46.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhh-cCCCCeEEEEEecCCcCHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHccCeE
Q 001457 183 INIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKRVQDEIARFLNTELEGDVEVLRAAFLSERLKRQKRV 261 (1074)
Q Consensus 183 ~~vi~I~G~gG~GKTtLa~~v~~~-~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~ 261 (1074)
..-+.++|.+|+|||.||.++.+. .+.--.+.++++ .++..++...... + .....+.+.+ .+-=
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~------~el~~~Lk~~~~~---~----~~~~~l~~~l--~~~d 169 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITA------PDLLSKLKAAFDE---G----RLEEKLLREL--KKVD 169 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEH------HHHHHHHHHHHhc---C----chHHHHHHHh--hcCC
Confidence 567899999999999999999999 422234556653 4455555544332 1 1122333334 2556
Q ss_pred EEEEcCccc
Q 001457 262 LIILDDLWG 270 (1074)
Q Consensus 262 LlVlDdv~~ 270 (1074)
||||||+-.
T Consensus 170 lLIiDDlG~ 178 (254)
T COG1484 170 LLIIDDIGY 178 (254)
T ss_pred EEEEecccC
Confidence 899999864
No 273
>PRK06547 hypothetical protein; Provisional
Probab=95.33 E-value=0.024 Score=56.05 Aligned_cols=33 Identities=24% Similarity=0.311 Sum_probs=26.4
Q ss_pred HHHHHhcCCCceeEEEEEcCCCCcHHHHHHHHHhh
Q 001457 172 VMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ 206 (1074)
Q Consensus 172 l~~~l~~~~~~~~vi~I~G~gG~GKTtLa~~v~~~ 206 (1074)
+...+.... ..+|+|.|.+|+||||+|+.+...
T Consensus 6 ~~~~~~~~~--~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 6 IAARLCGGG--MITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred HHHHhhcCC--CEEEEEECCCCCCHHHHHHHHHHH
Confidence 334444444 789999999999999999999876
No 274
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=95.33 E-value=0.039 Score=55.66 Aligned_cols=22 Identities=27% Similarity=0.471 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 001457 185 IIGVYGSGGIGKTTLMKQVMKQ 206 (1074)
Q Consensus 185 vi~I~G~gG~GKTtLa~~v~~~ 206 (1074)
||.|+|++|+||||+|+.+...
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~ 22 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVEN 22 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999876
No 275
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.30 E-value=0.056 Score=59.99 Aligned_cols=84 Identities=14% Similarity=0.257 Sum_probs=48.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhh-cCCC--CeEEEEEecCCc--CHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHc
Q 001457 183 INIIGVYGSGGIGKTTLMKQVMKQ-EIPF--DKVIFVRVTQTP--DVKRVQDEIARFLNTELEGDVEVLRAAFLSERLKR 257 (1074)
Q Consensus 183 ~~vi~I~G~gG~GKTtLa~~v~~~-~~~F--~~~~wv~vs~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 257 (1074)
-.++.++|+.|+||||++.++... ...+ ..+..++. +.+ ...+-++...+.++..................+.
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~-D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~- 214 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTT-DSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELR- 214 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEec-ccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhc-
Confidence 469999999999999999999887 3333 34555553 333 3444555556666654432222111222223342
Q ss_pred cCeEEEEEcCcc
Q 001457 258 QKRVLIILDDLW 269 (1074)
Q Consensus 258 ~k~~LlVlDdv~ 269 (1074)
++-+|++|..-
T Consensus 215 -~~DlVLIDTaG 225 (374)
T PRK14722 215 -NKHMVLIDTIG 225 (374)
T ss_pred -CCCEEEEcCCC
Confidence 34566689864
No 276
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=95.28 E-value=0.14 Score=54.06 Aligned_cols=48 Identities=19% Similarity=0.269 Sum_probs=35.3
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHhh-cCCCCeEEEEEecCCcCHHHHHHHH
Q 001457 182 SINIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKRVQDEI 231 (1074)
Q Consensus 182 ~~~vi~I~G~gG~GKTtLa~~v~~~-~~~F~~~~wv~vs~~~~~~~~~~~i 231 (1074)
.-.++.|.|.+|+|||++|.++... -..-..++||+... +..++.+.+
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee--~~~~i~~~~ 68 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEE--HPVQVRRNM 68 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeC--CHHHHHHHH
Confidence 3579999999999999999987665 33346788888765 445555543
No 277
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=95.27 E-value=0.04 Score=67.38 Aligned_cols=101 Identities=16% Similarity=0.282 Sum_probs=54.4
Q ss_pred cchHHHHHHHHHHHhc-------CCCceeEEEEEcCCCCcHHHHHHHHHhh-cCCCCeEEEEEecCCcCHHHHHHHHHHH
Q 001457 163 KSALEVIKSVMKLLKD-------NSISINIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKRVQDEIARF 234 (1074)
Q Consensus 163 ~~r~~~~~~l~~~l~~-------~~~~~~vi~I~G~gG~GKTtLa~~v~~~-~~~F~~~~wv~vs~~~~~~~~~~~i~~~ 234 (1074)
.|.++.++.+...+.. .......+.++|++|+|||++|+.+... ... .+.++.+.-.... .+.+-
T Consensus 461 iGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~---~i~id~se~~~~~----~~~~L 533 (758)
T PRK11034 461 FGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIE---LLRFDMSEYMERH----TVSRL 533 (758)
T ss_pred eCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhCCC---cEEeechhhcccc----cHHHH
Confidence 4566667777666642 1122457899999999999999999877 322 2344444322111 11122
Q ss_pred hccCCCcchHHHHHHHHHHHHHccCeEEEEEcCcccc
Q 001457 235 LNTELEGDVEVLRAAFLSERLKRQKRVLIILDDLWGK 271 (1074)
Q Consensus 235 l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~ 271 (1074)
+|... +.........+.+.+......+|+||++...
T Consensus 534 iG~~~-gyvg~~~~g~L~~~v~~~p~sVlllDEieka 569 (758)
T PRK11034 534 IGAPP-GYVGFDQGGLLTDAVIKHPHAVLLLDEIEKA 569 (758)
T ss_pred cCCCC-CcccccccchHHHHHHhCCCcEEEeccHhhh
Confidence 22211 1100011122334444345679999999753
No 278
>PTZ00301 uridine kinase; Provisional
Probab=95.27 E-value=0.022 Score=58.24 Aligned_cols=24 Identities=29% Similarity=0.693 Sum_probs=22.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhh
Q 001457 183 INIIGVYGSGGIGKTTLMKQVMKQ 206 (1074)
Q Consensus 183 ~~vi~I~G~gG~GKTtLa~~v~~~ 206 (1074)
..+|+|.|.+|+||||||+.+.+.
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~ 26 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSE 26 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHH
Confidence 579999999999999999999877
No 279
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=95.27 E-value=0.24 Score=52.50 Aligned_cols=146 Identities=23% Similarity=0.234 Sum_probs=83.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhhcCCCC-eEEEEEecCCcCH-HHHHHHHHHHhccCCCc-----chHHHHHHHHHHHH
Q 001457 183 INIIGVYGSGGIGKTTLMKQVMKQEIPFD-KVIFVRVTQTPDV-KRVQDEIARFLNTELEG-----DVEVLRAAFLSERL 255 (1074)
Q Consensus 183 ~~vi~I~G~gG~GKTtLa~~v~~~~~~F~-~~~wv~vs~~~~~-~~~~~~i~~~l~~~~~~-----~~~~~~~~~l~~~l 255 (1074)
-.-|.|+|+.|.|||+|.-.+..+.+.|. ...-|...+.... +-.++.|.+|+..+... .+-.+....+.+.|
T Consensus 49 snsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~al~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L 128 (408)
T KOG2228|consen 49 SNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKIALKGITRQLALELNRIVKSFGSFTENLSKLLEAL 128 (408)
T ss_pred CCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHHHHHHHHHHHHHHHhhhheeecccchhHHHHHHHH
Confidence 34677899999999999988777733343 3334445544333 23456666665432211 11133344555555
Q ss_pred H-----ccCeEEEEEcCccccc----c--c-cccccCCCCCCCCeEEEEecCChhH-------HhhccCCCeEeCCCCCH
Q 001457 256 K-----RQKRVLIILDDLWGKL----D--L-AVVGIPYGEEHKGCKIILTSRFKEV-------CDEMESTNYVQVEELTD 316 (1074)
Q Consensus 256 ~-----~~k~~LlVlDdv~~~~----~--~-~~~~~~~~~~~~gs~iivTTR~~~v-------~~~~~~~~~~~l~~L~~ 316 (1074)
+ .+-+++.|+|.++--- + + .-+-..-....+-+-|-+|||-.-. -..+....++-++.++-
T Consensus 129 ~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttrld~lE~LEKRVKSRFshr~I~m~~~~~l 208 (408)
T KOG2228|consen 129 KKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTRLDILELLEKRVKSRFSHRVIFMLPSLPL 208 (408)
T ss_pred hcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeeccccHHHHHHHHHHhhcccceeeccCCCCh
Confidence 4 2446888888776321 1 1 1111111134567889999996543 22233334667788888
Q ss_pred HHHHHHHHHhcC
Q 001457 317 EDRLILFKKKAG 328 (1074)
Q Consensus 317 ~~~~~lf~~~a~ 328 (1074)
++...++++...
T Consensus 209 ~~yv~l~r~ll~ 220 (408)
T KOG2228|consen 209 GDYVDLYRKLLS 220 (408)
T ss_pred HHHHHHHHHHhc
Confidence 888888877764
No 280
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.25 E-value=1.4 Score=49.20 Aligned_cols=169 Identities=17% Similarity=0.189 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHhcCC-------CceeEEEEEcCCCCcHHHHHHHHHhhcCCCCeEEEEEecCCcCHHHHHHHHHHHhccC
Q 001457 166 LEVIKSVMKLLKDNS-------ISINIIGVYGSGGIGKTTLMKQVMKQEIPFDKVIFVRVTQTPDVKRVQDEIARFLNTE 238 (1074)
Q Consensus 166 ~~~~~~l~~~l~~~~-------~~~~vi~I~G~gG~GKTtLa~~v~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~ 238 (1074)
++.++++.+.+...+ .=-|=-.++|++|.||||++.+++|. -.||.+- +..+...+-.+
T Consensus 211 ~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~-L~ydIyd-LeLt~v~~n~d------------ 276 (457)
T KOG0743|consen 211 ERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANY-LNYDIYD-LELTEVKLDSD------------ 276 (457)
T ss_pred HHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhh-cCCceEE-eeeccccCcHH------------
Confidence 344555555555443 11345678999999999999999986 2233221 22222111111
Q ss_pred CCcchHHHHHHHHHHHHH-ccCeEEEEEcCcccccc-----------cc---------ccccCCC--CCCC-CeEEE-Ee
Q 001457 239 LEGDVEVLRAAFLSERLK-RQKRVLIILDDLWGKLD-----------LA---------VVGIPYG--EEHK-GCKII-LT 293 (1074)
Q Consensus 239 ~~~~~~~~~~~~l~~~l~-~~k~~LlVlDdv~~~~~-----------~~---------~~~~~~~--~~~~-gs~ii-vT 293 (1074)
|++.|. ...|-+||+.|++-.-+ .+ -+...+. +... +=||| .|
T Consensus 277 ------------Lr~LL~~t~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFT 344 (457)
T KOG0743|consen 277 ------------LRHLLLATPNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFT 344 (457)
T ss_pred ------------HHHHHHhCCCCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEe
Confidence 222221 24566777777753211 11 0111111 1122 22554 57
Q ss_pred cCChhHHh--hcc---CCCeEeCCCCCHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhCCChHHHHHHH-HHHcCC
Q 001457 294 SRFKEVCD--EME---STNYVQVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLPNAIVIIG-TALRHK 364 (1074)
Q Consensus 294 TR~~~v~~--~~~---~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~i~~~c~glPLai~~~~-~~l~~~ 364 (1074)
|-..+-.. .+. -+-.+.+.--+.+....||..+.+...+++-..+ |.+.-.|.-+.=..+| .+|..+
T Consensus 345 TNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~~h~L~~e----ie~l~~~~~~tPA~V~e~lm~~~ 417 (457)
T KOG0743|consen 345 TNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEEDHRLFDE----IERLIEETEVTPAQVAEELMKNK 417 (457)
T ss_pred cCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCCCcchhHH----HHHHhhcCccCHHHHHHHHhhcc
Confidence 77665521 111 2246788999999999999999874333443344 4444444433333333 344544
No 281
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=95.22 E-value=0.15 Score=56.32 Aligned_cols=54 Identities=24% Similarity=0.396 Sum_probs=40.3
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHhh-cC--C----CCeEEEEEecCCcCHHHHHHHHHHHhc
Q 001457 182 SINIIGVYGSGGIGKTTLMKQVMKQ-EI--P----FDKVIFVRVTQTPDVKRVQDEIARFLN 236 (1074)
Q Consensus 182 ~~~vi~I~G~gG~GKTtLa~~v~~~-~~--~----F~~~~wv~vs~~~~~~~~~~~i~~~l~ 236 (1074)
.-.++-|+|.+|+|||+++.++.-. .. . =..++||+..+.++..++.+ +++.++
T Consensus 101 ~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~-~~~~~g 161 (317)
T PRK04301 101 TQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQ-MAEALG 161 (317)
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHH-HHHHcC
Confidence 3579999999999999999988765 11 1 14789999999888877654 444444
No 282
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.19 E-value=0.13 Score=56.77 Aligned_cols=24 Identities=33% Similarity=0.583 Sum_probs=22.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhh
Q 001457 183 INIIGVYGSGGIGKTTLMKQVMKQ 206 (1074)
Q Consensus 183 ~~vi~I~G~gG~GKTtLa~~v~~~ 206 (1074)
.++|+++|++|+||||++..+...
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~ 264 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQ 264 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHH
Confidence 579999999999999999998877
No 283
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=95.18 E-value=0.1 Score=54.58 Aligned_cols=46 Identities=15% Similarity=0.190 Sum_probs=32.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhh--cCCCCeEEEEEecCCcCHHHHHHHH
Q 001457 183 INIIGVYGSGGIGKTTLMKQVMKQ--EIPFDKVIFVRVTQTPDVKRVQDEI 231 (1074)
Q Consensus 183 ~~vi~I~G~gG~GKTtLa~~v~~~--~~~F~~~~wv~vs~~~~~~~~~~~i 231 (1074)
-.++.|.|.+|+||||+|.++... ++. ..++|++... +..++.+.+
T Consensus 24 g~~~~i~G~~G~GKTtl~~~~~~~~~~~g-~~~~yi~~e~--~~~~~~~~~ 71 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQRLAYGFLQNG-YSVSYVSTQL--TTTEFIKQM 71 (230)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhCC-CcEEEEeCCC--CHHHHHHHH
Confidence 459999999999999998766555 333 4556776333 445666665
No 284
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=95.15 E-value=0.05 Score=52.89 Aligned_cols=33 Identities=27% Similarity=0.479 Sum_probs=26.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhhcCCCCeEEEEEecC
Q 001457 183 INIIGVYGSGGIGKTTLMKQVMKQEIPFDKVIFVRVTQ 220 (1074)
Q Consensus 183 ~~vi~I~G~gG~GKTtLa~~v~~~~~~F~~~~wv~vs~ 220 (1074)
-.++.|.|++|+|||||+++++.+. .++++||.
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~-----~l~~SVS~ 36 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD-----KLRFSVSA 36 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc-----CeEEEEEe
Confidence 3588999999999999999999873 34455553
No 285
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.15 E-value=0.016 Score=59.11 Aligned_cols=22 Identities=50% Similarity=0.776 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 001457 185 IIGVYGSGGIGKTTLMKQVMKQ 206 (1074)
Q Consensus 185 vi~I~G~gG~GKTtLa~~v~~~ 206 (1074)
||+|.|.+|+||||+|+.+...
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~ 22 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQI 22 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999999988
No 286
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=95.14 E-value=0.026 Score=54.06 Aligned_cols=34 Identities=29% Similarity=0.286 Sum_probs=27.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh-cCCCCeEEEEE
Q 001457 184 NIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVR 217 (1074)
Q Consensus 184 ~vi~I~G~gG~GKTtLa~~v~~~-~~~F~~~~wv~ 217 (1074)
.||-|.|.+|+||||||+.+... ...-..+.+++
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LD 37 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERRLFARGIKVYLLD 37 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEec
Confidence 58999999999999999999998 44445566664
No 287
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=95.12 E-value=0.28 Score=49.35 Aligned_cols=129 Identities=21% Similarity=0.258 Sum_probs=71.1
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHhhcCCCCeEEEEEecCCcCHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHccCeE
Q 001457 182 SINIIGVYGSGGIGKTTLMKQVMKQEIPFDKVIFVRVTQTPDVKRVQDEIARFLNTELEGDVEVLRAAFLSERLKRQKRV 261 (1074)
Q Consensus 182 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~ 261 (1074)
..+-+.++|++|.|||-||+.|+++ ..+-|+.||...-+.+.+.+=.+ ....+.---+..-.-
T Consensus 180 QPKGvlLygppgtGktLlaraVahh----t~c~firvsgselvqk~igegsr-------------mvrelfvmarehaps 242 (404)
T KOG0728|consen 180 QPKGVLLYGPPGTGKTLLARAVAHH----TDCTFIRVSGSELVQKYIGEGSR-------------MVRELFVMAREHAPS 242 (404)
T ss_pred CCcceEEecCCCCchhHHHHHHHhh----cceEEEEechHHHHHHHhhhhHH-------------HHHHHHHHHHhcCCc
Confidence 3567889999999999999999976 34556888875333222211110 111111111134667
Q ss_pred EEEEcCccccc----------c------ccccccCCC--CCCCCeEEEEecCChhHHh-----hccCCCeEeCCCCCHHH
Q 001457 262 LIILDDLWGKL----------D------LAVVGIPYG--EEHKGCKIILTSRFKEVCD-----EMESTNYVQVEELTDED 318 (1074)
Q Consensus 262 LlVlDdv~~~~----------~------~~~~~~~~~--~~~~gs~iivTTR~~~v~~-----~~~~~~~~~l~~L~~~~ 318 (1074)
.|..|.+++.. + .-++...+. ...++-|||..|..-++.. .-..++.++.++-+++.
T Consensus 243 iifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnridild~allrpgridrkiefp~p~e~a 322 (404)
T KOG0728|consen 243 IIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEA 322 (404)
T ss_pred eEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEeccccccccHhhcCCCcccccccCCCCCHHH
Confidence 77788776421 0 001111111 1234567777765554421 12234567778877777
Q ss_pred HHHHHHHhc
Q 001457 319 RLILFKKKA 327 (1074)
Q Consensus 319 ~~~lf~~~a 327 (1074)
-.++++-+.
T Consensus 323 r~~ilkihs 331 (404)
T KOG0728|consen 323 RLDILKIHS 331 (404)
T ss_pred HHHHHHHhh
Confidence 777776554
No 288
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.11 E-value=0.67 Score=53.00 Aligned_cols=53 Identities=23% Similarity=0.196 Sum_probs=34.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhh--cCCCCeEEEEEecCCcC--HHHHHHHHHHHhcc
Q 001457 183 INIIGVYGSGGIGKTTLMKQVMKQ--EIPFDKVIFVRVTQTPD--VKRVQDEIARFLNT 237 (1074)
Q Consensus 183 ~~vi~I~G~gG~GKTtLa~~v~~~--~~~F~~~~wv~vs~~~~--~~~~~~~i~~~l~~ 237 (1074)
..+|.++|.+|+||||.|..++.. +..+ .++.|+.. .+. ..+.++.++.+++.
T Consensus 95 p~vI~lvG~~GsGKTTtaakLA~~L~~~g~-kV~lV~~D-~~R~aa~eQL~~la~~~gv 151 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTAAKLARYFKKKGL-KVGLVAAD-TYRPAAYDQLKQLAEKIGV 151 (437)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHHcCC-eEEEecCC-CCCHHHHHHHHHHHHHcCC
Confidence 679999999999999999998877 3333 33444432 222 23445555666554
No 289
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=95.10 E-value=0.029 Score=52.80 Aligned_cols=44 Identities=27% Similarity=0.426 Sum_probs=34.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh-cCCCCeEEEEEecCCcCHHHHHHHHHHHhccCC
Q 001457 185 IIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKRVQDEIARFLNTEL 239 (1074)
Q Consensus 185 vi~I~G~gG~GKTtLa~~v~~~-~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~ 239 (1074)
+|.|.|++|+||||+|+.+.++ .-.| | +.-.++++|++..|...
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~~-----v------saG~iFR~~A~e~gmsl 46 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLKL-----V------SAGTIFREMARERGMSL 46 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCce-----e------eccHHHHHHHHHcCCCH
Confidence 7899999999999999999988 3222 1 23468889998887654
No 290
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=95.10 E-value=0.098 Score=55.47 Aligned_cols=87 Identities=24% Similarity=0.274 Sum_probs=55.6
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHhh-cCCCCeEEEEEecCCcCHHHHHHHHHHH-hc---cCCCcchH--HHHHHHHHH
Q 001457 181 ISINIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKRVQDEIARF-LN---TELEGDVE--VLRAAFLSE 253 (1074)
Q Consensus 181 ~~~~vi~I~G~gG~GKTtLa~~v~~~-~~~F~~~~wv~vs~~~~~~~~~~~i~~~-l~---~~~~~~~~--~~~~~~l~~ 253 (1074)
+.-+++=|+|+.|+||||+|.+++-. ...-..++|++.-+.+++..+.. ++.. +. .......+ ...++.+..
T Consensus 58 ~~g~ItEiyG~~gsGKT~lal~~~~~aq~~g~~a~fIDtE~~l~p~r~~~-l~~~~~d~l~v~~~~~~e~q~~i~~~~~~ 136 (279)
T COG0468 58 PRGRITEIYGPESSGKTTLALQLVANAQKPGGKAAFIDTEHALDPERAKQ-LGVDLLDNLLVSQPDTGEQQLEIAEKLAR 136 (279)
T ss_pred ccceEEEEecCCCcchhhHHHHHHHHhhcCCCeEEEEeCCCCCCHHHHHH-HHHhhhcceeEecCCCHHHHHHHHHHHHH
Confidence 34689999999999999999997776 55555899999999998877643 3333 22 11111111 222233333
Q ss_pred HHHccCeEEEEEcCcc
Q 001457 254 RLKRQKRVLIILDDLW 269 (1074)
Q Consensus 254 ~l~~~k~~LlVlDdv~ 269 (1074)
... .+--|||+|-|-
T Consensus 137 ~~~-~~i~LvVVDSva 151 (279)
T COG0468 137 SGA-EKIDLLVVDSVA 151 (279)
T ss_pred hcc-CCCCEEEEecCc
Confidence 322 136788888774
No 291
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.05 E-value=0.019 Score=46.99 Aligned_cols=22 Identities=41% Similarity=0.705 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 001457 185 IIGVYGSGGIGKTTLMKQVMKQ 206 (1074)
Q Consensus 185 vi~I~G~gG~GKTtLa~~v~~~ 206 (1074)
+|+|.|..|+||||+|+.+.+.
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998875
No 292
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.05 E-value=0.0036 Score=60.99 Aligned_cols=72 Identities=18% Similarity=0.191 Sum_probs=52.3
Q ss_pred CcccCCceEEEecccccccccccccccccccCccEEEEeeccCcceeecccchhhcccCccccccccccccccccccccc
Q 001457 919 PMFFPNLKKLLIGKCNKMKRVLSLTNAHNLKQLEELTVASCNHMERIITVSDEEKAAENKNVLPKLKILALEDLPELDSV 998 (1074)
Q Consensus 919 ~~~~~~L~~L~l~~C~~L~~~~~~~~~~~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~i 998 (1074)
+..+++++.|.+.+|..+.+....-..+-.++|+.|+|++|+.+++-.- ..+..|++|+.|.|.+++.....
T Consensus 121 L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL--------~~L~~lknLr~L~l~~l~~v~~~ 192 (221)
T KOG3864|consen 121 LRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGL--------ACLLKLKNLRRLHLYDLPYVANL 192 (221)
T ss_pred HhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHH--------HHHHHhhhhHHHHhcCchhhhch
Confidence 3456888999999999988875433344568889999999988775421 35667888888888887765443
No 293
>PTZ00035 Rad51 protein; Provisional
Probab=95.05 E-value=0.2 Score=55.46 Aligned_cols=55 Identities=22% Similarity=0.242 Sum_probs=40.0
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHhh-c------CCCCeEEEEEecCCcCHHHHHHHHHHHhcc
Q 001457 182 SINIIGVYGSGGIGKTTLMKQVMKQ-E------IPFDKVIFVRVTQTPDVKRVQDEIARFLNT 237 (1074)
Q Consensus 182 ~~~vi~I~G~gG~GKTtLa~~v~~~-~------~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~ 237 (1074)
.-.++.|+|.+|+|||||+..++-. . ..=..++||+....++..++ .++++.++.
T Consensus 117 ~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri-~~ia~~~g~ 178 (337)
T PTZ00035 117 TGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERI-VQIAERFGL 178 (337)
T ss_pred CCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHH-HHHHHHhCC
Confidence 3579999999999999999988754 2 12245679998888877774 445555543
No 294
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.03 E-value=0.018 Score=54.20 Aligned_cols=21 Identities=43% Similarity=0.721 Sum_probs=19.1
Q ss_pred EEEEcCCCCcHHHHHHHHHhh
Q 001457 186 IGVYGSGGIGKTTLMKQVMKQ 206 (1074)
Q Consensus 186 i~I~G~gG~GKTtLa~~v~~~ 206 (1074)
|+|.|.+|+||||+|+.+...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999998765
No 295
>PRK13949 shikimate kinase; Provisional
Probab=95.03 E-value=0.12 Score=51.15 Aligned_cols=22 Identities=41% Similarity=0.424 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 001457 185 IIGVYGSGGIGKTTLMKQVMKQ 206 (1074)
Q Consensus 185 vi~I~G~gG~GKTtLa~~v~~~ 206 (1074)
-|.|+|++|+||||+++.+...
T Consensus 3 ~I~liG~~GsGKstl~~~La~~ 24 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARE 24 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999987
No 296
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=95.00 E-value=0.035 Score=52.78 Aligned_cols=37 Identities=19% Similarity=0.426 Sum_probs=28.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh--cCCCCeEEEEEecC
Q 001457 184 NIIGVYGSGGIGKTTLMKQVMKQ--EIPFDKVIFVRVTQ 220 (1074)
Q Consensus 184 ~vi~I~G~gG~GKTtLa~~v~~~--~~~F~~~~wv~vs~ 220 (1074)
++|.|+|..|+|||||++.+.+. ++.+...+..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRRGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHcCCceEEEEEccC
Confidence 48999999999999999999999 67777666776655
No 297
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=94.96 E-value=0.23 Score=54.89 Aligned_cols=53 Identities=23% Similarity=0.331 Sum_probs=40.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhh-cC------CCCeEEEEEecCCcCHHHHHHHHHHHhc
Q 001457 183 INIIGVYGSGGIGKTTLMKQVMKQ-EI------PFDKVIFVRVTQTPDVKRVQDEIARFLN 236 (1074)
Q Consensus 183 ~~vi~I~G~gG~GKTtLa~~v~~~-~~------~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 236 (1074)
-.++-|+|.+|+||||++.+++-. .. .-..++||+....++..++. ++++.++
T Consensus 95 g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~g 154 (310)
T TIGR02236 95 QAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEARG 154 (310)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHcC
Confidence 579999999999999999988765 21 11378999999888887765 4444444
No 298
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.96 E-value=0.14 Score=60.05 Aligned_cols=99 Identities=23% Similarity=0.308 Sum_probs=63.0
Q ss_pred CCCCCcccCcchHHHHHHHHHHHhc---------CC-CceeEEEEEcCCCCcHHHHHHHHHhh-cCCCCeEEEEEecCCc
Q 001457 154 IPTPEFVPLKSALEVIKSVMKLLKD---------NS-ISINIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTP 222 (1074)
Q Consensus 154 ~~~~~~~~~~~r~~~~~~l~~~l~~---------~~-~~~~vi~I~G~gG~GKTtLa~~v~~~-~~~F~~~~wv~vs~~~ 222 (1074)
.|.-...++.|-++.+.+|++.+.- .. ....=|.++|++|.|||-+|++|+.. .- .|++|-+.
T Consensus 666 IPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL-----~FlSVKGP- 739 (953)
T KOG0736|consen 666 IPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSL-----NFLSVKGP- 739 (953)
T ss_pred CCccchhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhcee-----eEEeecCH-
Confidence 4444444566788888888876532 11 12457889999999999999999987 33 34666554
Q ss_pred CHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHccCeEEEEEcCccc
Q 001457 223 DVKRVQDEIARFLNTELEGDVEVLRAAFLSERLKRQKRVLIILDDLWG 270 (1074)
Q Consensus 223 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~ 270 (1074)
++++.-+ ++++ +-...+.++-+..+.|+|.||.+++
T Consensus 740 ---ELLNMYV--------GqSE-~NVR~VFerAR~A~PCVIFFDELDS 775 (953)
T KOG0736|consen 740 ---ELLNMYV--------GQSE-ENVREVFERARSAAPCVIFFDELDS 775 (953)
T ss_pred ---HHHHHHh--------cchH-HHHHHHHHHhhccCCeEEEeccccc
Confidence 2222111 1222 2233444455567999999999875
No 299
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=94.95 E-value=0.071 Score=59.68 Aligned_cols=85 Identities=24% Similarity=0.255 Sum_probs=50.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhh-cCCCCeEEEEEecCCcCHHHHHHHHHHHhccCCCcc--hHHHHHHHHHHHHHccC
Q 001457 183 INIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKRVQDEIARFLNTELEGD--VEVLRAAFLSERLKRQK 259 (1074)
Q Consensus 183 ~~vi~I~G~gG~GKTtLa~~v~~~-~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~--~~~~~~~~l~~~l~~~k 259 (1074)
-.++.|.|.+|+|||||+.++... ...-..++|++..+. ..++. .-++.++...+.. ......+.+.+.+...+
T Consensus 82 GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs--~~qi~-~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~~~ 158 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEES--PEQIK-LRADRLGISTENLYLLAETNLEDILASIEELK 158 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcC--HHHHH-HHHHHcCCCcccEEEEccCcHHHHHHHHHhcC
Confidence 469999999999999999999877 333356778876443 33322 2234454322110 00112233444444456
Q ss_pred eEEEEEcCccc
Q 001457 260 RVLIILDDLWG 270 (1074)
Q Consensus 260 ~~LlVlDdv~~ 270 (1074)
.-+||+|.+..
T Consensus 159 ~~lVVIDSIq~ 169 (372)
T cd01121 159 PDLVIIDSIQT 169 (372)
T ss_pred CcEEEEcchHH
Confidence 67788888743
No 300
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=94.95 E-value=0.082 Score=54.77 Aligned_cols=38 Identities=26% Similarity=0.330 Sum_probs=27.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh-cC-CC-CeEEEEEecCCc
Q 001457 185 IIGVYGSGGIGKTTLMKQVMKQ-EI-PF-DKVIFVRVTQTP 222 (1074)
Q Consensus 185 vi~I~G~gG~GKTtLa~~v~~~-~~-~F-~~~~wv~vs~~~ 222 (1074)
+|+|.|.+|+||||+|+.+... .. .. ..+..++...-+
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f~ 41 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFL 41 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCccc
Confidence 5899999999999999999887 32 12 234455554443
No 301
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=94.95 E-value=0.09 Score=56.84 Aligned_cols=37 Identities=24% Similarity=0.365 Sum_probs=27.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhh--cC-CCCeEEEEEec
Q 001457 183 INIIGVYGSGGIGKTTLMKQVMKQ--EI-PFDKVIFVRVT 219 (1074)
Q Consensus 183 ~~vi~I~G~gG~GKTtLa~~v~~~--~~-~F~~~~wv~vs 219 (1074)
.++|+|+|++|+||||++..+... .. .-..+..|+..
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D 233 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTD 233 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECC
Confidence 569999999999999999988776 22 11345556543
No 302
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=94.93 E-value=0.21 Score=54.78 Aligned_cols=55 Identities=20% Similarity=0.181 Sum_probs=40.0
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHhh---c----CCCCeEEEEEecCCcCHHHHHHHHHHHhcc
Q 001457 182 SINIIGVYGSGGIGKTTLMKQVMKQ---E----IPFDKVIFVRVTQTPDVKRVQDEIARFLNT 237 (1074)
Q Consensus 182 ~~~vi~I~G~gG~GKTtLa~~v~~~---~----~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~ 237 (1074)
.-.++.|+|.+|+|||||+..++.. . ..-..++|++..+.+...++ .++++.++.
T Consensus 95 ~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl-~~ia~~~~~ 156 (316)
T TIGR02239 95 TGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERL-LAIAERYGL 156 (316)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHH-HHHHHHcCC
Confidence 3579999999999999999987653 1 11246799998888887764 445555543
No 303
>PRK04328 hypothetical protein; Provisional
Probab=94.92 E-value=0.14 Score=54.25 Aligned_cols=39 Identities=18% Similarity=0.264 Sum_probs=31.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhh-cCCCCeEEEEEecCC
Q 001457 183 INIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQT 221 (1074)
Q Consensus 183 ~~vi~I~G~gG~GKTtLa~~v~~~-~~~F~~~~wv~vs~~ 221 (1074)
-.++.|.|.+|+|||++|.++... -..-..++|++..+.
T Consensus 23 gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ee~ 62 (249)
T PRK04328 23 RNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALEEH 62 (249)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEeeCC
Confidence 569999999999999999987665 333467889887664
No 304
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=94.91 E-value=1 Score=51.10 Aligned_cols=24 Identities=33% Similarity=0.339 Sum_probs=21.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhh
Q 001457 183 INIIGVYGSGGIGKTTLMKQVMKQ 206 (1074)
Q Consensus 183 ~~vi~I~G~gG~GKTtLa~~v~~~ 206 (1074)
..+|.++|..|+||||+|.++...
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~ 123 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYY 123 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 679999999999999999888766
No 305
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=94.91 E-value=0.15 Score=53.69 Aligned_cols=85 Identities=20% Similarity=0.244 Sum_probs=52.5
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHhh-cCCCCeEEEEEecCCcCHHHHHHHHHHHhccCCC--------------------
Q 001457 182 SINIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKRVQDEIARFLNTELE-------------------- 240 (1074)
Q Consensus 182 ~~~vi~I~G~gG~GKTtLa~~v~~~-~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~-------------------- 240 (1074)
.-.++.|+|.+|+||||+|.++... ..+=..++|++..+. ..++.+++ .+++-...
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~--~~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~~~~ 100 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENT--SKSYLKQM-ESVKIDISDFFLWGYLRIFPLNTEGFEW 100 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCC--HHHHHHHH-HHCCCChhHHHhCCCceEEecccccccc
Confidence 3579999999999999999998655 333457889988654 34555543 22321111
Q ss_pred -cchHHHHHHHHHHHHHccCeEEEEEcCcc
Q 001457 241 -GDVEVLRAAFLSERLKRQKRVLIILDDLW 269 (1074)
Q Consensus 241 -~~~~~~~~~~l~~~l~~~k~~LlVlDdv~ 269 (1074)
..........+.+.+...+.-++|+|.+-
T Consensus 101 ~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 101 NSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred CcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 01113344555555543455678888765
No 306
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=94.91 E-value=0.2 Score=55.26 Aligned_cols=54 Identities=22% Similarity=0.226 Sum_probs=41.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhh---c----CCCCeEEEEEecCCcCHHHHHHHHHHHhcc
Q 001457 183 INIIGVYGSGGIGKTTLMKQVMKQ---E----IPFDKVIFVRVTQTPDVKRVQDEIARFLNT 237 (1074)
Q Consensus 183 ~~vi~I~G~gG~GKTtLa~~v~~~---~----~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~ 237 (1074)
-.++-|+|.+|+|||++|..++-. . ..-..++||+....|...++. +|++.++.
T Consensus 123 g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~-qia~~~~~ 183 (342)
T PLN03186 123 GSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLI-QIAERFGL 183 (342)
T ss_pred ceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHH-HHHHHcCC
Confidence 568999999999999999877644 1 122378999999999888764 55666554
No 307
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=94.88 E-value=0.03 Score=57.14 Aligned_cols=109 Identities=13% Similarity=0.151 Sum_probs=57.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh-cCCCCeEEEEEecCCcCHH-HHHHHHHHHhccCCCcchHHHHHHHHHHHHHccCeE
Q 001457 184 NIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVK-RVQDEIARFLNTELEGDVEVLRAAFLSERLKRQKRV 261 (1074)
Q Consensus 184 ~vi~I~G~gG~GKTtLa~~v~~~-~~~F~~~~wv~vs~~~~~~-~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~ 261 (1074)
.+|.|+|+.|+||||+++.+... .......+++- .+..... .-...+..+-. . +.......+.++..+. ...=
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~-e~~~E~~~~~~~~~i~q~~--v-g~~~~~~~~~i~~aLr-~~pd 76 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTI-EDPIEFVHESKRSLINQRE--V-GLDTLSFENALKAALR-QDPD 76 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEE-cCCccccccCccceeeecc--c-CCCccCHHHHHHHHhc-CCcC
Confidence 47899999999999999988877 43444444432 2211100 00001111100 0 0011123344555554 3566
Q ss_pred EEEEcCccccccccccccCCCCCCCCeEEEEecCChhHH
Q 001457 262 LIILDDLWGKLDLAVVGIPYGEEHKGCKIILTSRFKEVC 300 (1074)
Q Consensus 262 LlVlDdv~~~~~~~~~~~~~~~~~~gs~iivTTR~~~v~ 300 (1074)
.|++|++.+.+........ ...|-.++.|+-..++.
T Consensus 77 ~ii~gEird~e~~~~~l~~---a~~G~~v~~t~Ha~~~~ 112 (198)
T cd01131 77 VILVGEMRDLETIRLALTA---AETGHLVMSTLHTNSAA 112 (198)
T ss_pred EEEEcCCCCHHHHHHHHHH---HHcCCEEEEEecCCcHH
Confidence 8999999876654432222 12355677777655543
No 308
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=94.87 E-value=0.11 Score=52.29 Aligned_cols=116 Identities=15% Similarity=0.227 Sum_probs=61.8
Q ss_pred CCCcccCcchHHHH-HHHHHHHhcCCCceeEEEEEcCCCCcHHHHHHHHHhh-cCCCCeEEEEEecCCcCHHHHHHHHHH
Q 001457 156 TPEFVPLKSALEVI-KSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKRVQDEIAR 233 (1074)
Q Consensus 156 ~~~~~~~~~r~~~~-~~l~~~l~~~~~~~~vi~I~G~gG~GKTtLa~~v~~~-~~~F~~~~wv~vs~~~~~~~~~~~i~~ 233 (1074)
-..++|++...+.+ +.-...+.+-. ---|.+||.-|+||++|++++.+. ....-..+= |.+.
T Consensus 59 L~~l~Gvd~qk~~L~~NT~~F~~G~p--ANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVE--V~k~------------ 122 (287)
T COG2607 59 LADLVGVDRQKEALVRNTEQFAEGLP--ANNVLLWGARGTGKSSLVKALLNEYADEGLRLVE--VDKE------------ 122 (287)
T ss_pred HHHHhCchHHHHHHHHHHHHHHcCCc--ccceEEecCCCCChHHHHHHHHHHHHhcCCeEEE--EcHH------------
Confidence 34455554333332 22233333333 346779999999999999999998 443333222 2221
Q ss_pred HhccCCCcchHHHHHHHHHHHHH-ccCeEEEEEcCcccc---ccccccccCCCC---CCCCeEEEEecCCh
Q 001457 234 FLNTELEGDVEVLRAAFLSERLK-RQKRVLIILDDLWGK---LDLAVVGIPYGE---EHKGCKIILTSRFK 297 (1074)
Q Consensus 234 ~l~~~~~~~~~~~~~~~l~~~l~-~~k~~LlVlDdv~~~---~~~~~~~~~~~~---~~~gs~iivTTR~~ 297 (1074)
+-.....|.+.|+ ...||+|..||..-+ +....++..+.. +.+...++..|.++
T Consensus 123 ----------dl~~Lp~l~~~Lr~~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNR 183 (287)
T COG2607 123 ----------DLATLPDLVELLRARPEKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSNR 183 (287)
T ss_pred ----------HHhhHHHHHHHHhcCCceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecCC
Confidence 1111223333343 478999999998633 334455444432 22334455555544
No 309
>PRK04296 thymidine kinase; Provisional
Probab=94.87 E-value=0.037 Score=55.97 Aligned_cols=109 Identities=15% Similarity=0.111 Sum_probs=60.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh-cCCCCeEEEEEecCCcCHHHHHHHHHHHhccCCCc---chHHHHHHHHHHHHHccC
Q 001457 184 NIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKRVQDEIARFLNTELEG---DVEVLRAAFLSERLKRQK 259 (1074)
Q Consensus 184 ~vi~I~G~gG~GKTtLa~~v~~~-~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~l~~~l~~~k 259 (1074)
.++.|+|..|.||||+|.....+ ..+-..++.+. ..++.......++++++..... ....+....+.+ ..++
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~--~~~~ 78 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE--EGEK 78 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEe--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHh--hCCC
Confidence 47889999999999999998887 33333333331 2223233344456666543322 112233333333 2345
Q ss_pred eEEEEEcCcccc--ccccccccCCCCCCCCeEEEEecCChh
Q 001457 260 RVLIILDDLWGK--LDLAVVGIPYGEEHKGCKIILTSRFKE 298 (1074)
Q Consensus 260 ~~LlVlDdv~~~--~~~~~~~~~~~~~~~gs~iivTTR~~~ 298 (1074)
.-+||+|.+.-- ++..++...+ ...|..||+|.++.+
T Consensus 79 ~dvviIDEaq~l~~~~v~~l~~~l--~~~g~~vi~tgl~~~ 117 (190)
T PRK04296 79 IDCVLIDEAQFLDKEQVVQLAEVL--DDLGIPVICYGLDTD 117 (190)
T ss_pred CCEEEEEccccCCHHHHHHHHHHH--HHcCCeEEEEecCcc
Confidence 568999998532 2222221111 234788999988743
No 310
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=94.86 E-value=0.093 Score=53.10 Aligned_cols=44 Identities=18% Similarity=0.231 Sum_probs=30.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh-cCCCCeEEEEEecCCcCHHHHHHH
Q 001457 185 IIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKRVQDE 230 (1074)
Q Consensus 185 vi~I~G~gG~GKTtLa~~v~~~-~~~F~~~~wv~vs~~~~~~~~~~~ 230 (1074)
++.|.|.+|+|||++|.++... -..=..++|++.... ...+.+.
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~--~~~~~~~ 45 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEES--PEELIEN 45 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCC--HHHHHHH
Confidence 3679999999999999998777 222255778876543 4444433
No 311
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=94.86 E-value=0.096 Score=52.21 Aligned_cols=22 Identities=32% Similarity=0.422 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 001457 185 IIGVYGSGGIGKTTLMKQVMKQ 206 (1074)
Q Consensus 185 vi~I~G~gG~GKTtLa~~v~~~ 206 (1074)
++.++|++|+||||+++.+...
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~ 23 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALY 23 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6889999999999999999887
No 312
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=94.85 E-value=0.043 Score=54.44 Aligned_cols=22 Identities=41% Similarity=0.593 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 001457 185 IIGVYGSGGIGKTTLMKQVMKQ 206 (1074)
Q Consensus 185 vi~I~G~gG~GKTtLa~~v~~~ 206 (1074)
.|.|.|.+|+||||+|+.+.+.
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999988
No 313
>PRK13531 regulatory ATPase RavA; Provisional
Probab=94.84 E-value=0.067 Score=60.80 Aligned_cols=41 Identities=15% Similarity=0.187 Sum_probs=36.0
Q ss_pred CcchHHHHHHHHHHHhcCCCceeEEEEEcCCCCcHHHHHHHHHhh
Q 001457 162 LKSALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ 206 (1074)
Q Consensus 162 ~~~r~~~~~~l~~~l~~~~~~~~vi~I~G~gG~GKTtLa~~v~~~ 206 (1074)
+.|+++.++.++..+..+. -|.|.|++|+|||++|+.+...
T Consensus 22 i~gre~vI~lll~aalag~----hVLL~GpPGTGKT~LAraLa~~ 62 (498)
T PRK13531 22 LYERSHAIRLCLLAALSGE----SVFLLGPPGIAKSLIARRLKFA 62 (498)
T ss_pred ccCcHHHHHHHHHHHccCC----CEEEECCCChhHHHHHHHHHHH
Confidence 6689999999888887665 6889999999999999999986
No 314
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=94.84 E-value=0.08 Score=60.24 Aligned_cols=149 Identities=18% Similarity=0.260 Sum_probs=85.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhh-cCCCCeEEEEEecCCcCHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHccCeE
Q 001457 183 INIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKRVQDEIARFLNTELEGDVEVLRAAFLSERLKRQKRV 261 (1074)
Q Consensus 183 ~~vi~I~G~gG~GKTtLa~~v~~~-~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~ 261 (1074)
..=|.+||++|+|||-||++|+|. +.+| ++|-+. +++..-. + ..+..+..+.++-+..-.|
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANEag~NF-----isVKGP----ELlNkYV--------G-ESErAVR~vFqRAR~saPC 606 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANEAGANF-----ISVKGP----ELLNKYV--------G-ESERAVRQVFQRARASAPC 606 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhhccCce-----EeecCH----HHHHHHh--------h-hHHHHHHHHHHHhhcCCCe
Confidence 557889999999999999999999 7666 555543 2222111 1 1123344555555567899
Q ss_pred EEEEcCcccc-------ccc------cccccCCC--CCCCCeEEEEecCChhHHh-h-c---cCCCeEeCCCCCHHHHHH
Q 001457 262 LIILDDLWGK-------LDL------AVVGIPYG--EEHKGCKIILTSRFKEVCD-E-M---ESTNYVQVEELTDEDRLI 321 (1074)
Q Consensus 262 LlVlDdv~~~-------~~~------~~~~~~~~--~~~~gs~iivTTR~~~v~~-~-~---~~~~~~~l~~L~~~~~~~ 321 (1074)
+|.||.++.. ..| .++..-+. ....|--||-.|.-.++.. . . .-++..-+..-+.+|-..
T Consensus 607 VIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ 686 (802)
T KOG0733|consen 607 VIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVA 686 (802)
T ss_pred EEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHHHH
Confidence 9999998642 111 12222222 1234666666665555521 1 1 123455666667788888
Q ss_pred HHHHhcCC--CC--CCchhHHHHHHHHHHhCCCh
Q 001457 322 LFKKKAGL--PE--GTKAFDRAAEEVVRQCGKLP 351 (1074)
Q Consensus 322 lf~~~a~~--~~--~~~~~~~~~~~i~~~c~glP 351 (1074)
+++..... .. ..-++.++|+. .+|.|.-
T Consensus 687 ILK~~tkn~k~pl~~dVdl~eia~~--~~c~gft 718 (802)
T KOG0733|consen 687 ILKTITKNTKPPLSSDVDLDEIARN--TKCEGFT 718 (802)
T ss_pred HHHHHhccCCCCCCcccCHHHHhhc--ccccCCc
Confidence 88777652 11 12245555543 3555543
No 315
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=94.84 E-value=0.14 Score=50.46 Aligned_cols=23 Identities=22% Similarity=0.466 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 001457 184 NIIGVYGSGGIGKTTLMKQVMKQ 206 (1074)
Q Consensus 184 ~vi~I~G~gG~GKTtLa~~v~~~ 206 (1074)
.+++|+|..|.|||||++.+...
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~G~ 50 (166)
T cd03223 28 DRLLITGPSGTGKSSLFRALAGL 50 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999999887
No 316
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=94.81 E-value=0.32 Score=57.04 Aligned_cols=23 Identities=35% Similarity=0.629 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 001457 184 NIIGVYGSGGIGKTTLMKQVMKQ 206 (1074)
Q Consensus 184 ~vi~I~G~gG~GKTtLa~~v~~~ 206 (1074)
..|+|+|+.|+|||||.+.+...
T Consensus 349 ~riaiiG~NG~GKSTLlk~l~g~ 371 (530)
T COG0488 349 DRIAIVGPNGAGKSTLLKLLAGE 371 (530)
T ss_pred CEEEEECCCCCCHHHHHHHHhhh
Confidence 47999999999999999999766
No 317
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=94.81 E-value=0.2 Score=50.88 Aligned_cols=28 Identities=29% Similarity=0.424 Sum_probs=24.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhh-cCCC
Q 001457 183 INIIGVYGSGGIGKTTLMKQVMKQ-EIPF 210 (1074)
Q Consensus 183 ~~vi~I~G~gG~GKTtLa~~v~~~-~~~F 210 (1074)
.+-|..+|++|.|||-+|++|.|+ ...|
T Consensus 211 pkgvllygppgtgktl~aravanrtdacf 239 (435)
T KOG0729|consen 211 PKGVLLYGPPGTGKTLCARAVANRTDACF 239 (435)
T ss_pred CCceEEeCCCCCchhHHHHHHhcccCceE
Confidence 567889999999999999999998 4444
No 318
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=94.77 E-value=0.038 Score=55.65 Aligned_cols=28 Identities=39% Similarity=0.655 Sum_probs=24.7
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHhh-cCC
Q 001457 182 SINIIGVYGSGGIGKTTLMKQVMKQ-EIP 209 (1074)
Q Consensus 182 ~~~vi~I~G~gG~GKTtLa~~v~~~-~~~ 209 (1074)
.+.+|||.|.+|+||||+|+.++.. +..
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~~~~~ 35 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQLGVE 35 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHhCcC
Confidence 3689999999999999999999988 444
No 319
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=94.77 E-value=0.024 Score=54.46 Aligned_cols=22 Identities=41% Similarity=0.628 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 001457 185 IIGVYGSGGIGKTTLMKQVMKQ 206 (1074)
Q Consensus 185 vi~I~G~gG~GKTtLa~~v~~~ 206 (1074)
+|.++|++|+||||+|+.+...
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~ 22 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKR 22 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 6889999999999999999876
No 320
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.75 E-value=0.072 Score=50.03 Aligned_cols=78 Identities=15% Similarity=0.370 Sum_probs=29.8
Q ss_pred CCCCccEEEccCCCCCCCChhHHhcCCCccEEEecCCccCCCCC-CccCCccCCeeeccCCCCCC--CccccCCCCccEE
Q 001457 529 KCPRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSLAP-SLPCLEKLRSLHLENTHLND--ASLIREFGELEVL 605 (1074)
Q Consensus 529 ~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~Lr~L~L~~~~l~~--~~~i~~l~~L~~L 605 (1074)
++.+|+.+.+.. .+..+....|.++..|+.+.+.++ +..++. .+..+.+|+.+.+.+ .+.. ...+..+.+|+.+
T Consensus 10 ~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i 86 (129)
T PF13306_consen 10 NCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNI 86 (129)
T ss_dssp T-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEE
T ss_pred CCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccccc
Confidence 344555555543 344455555555555555555543 444433 344444555555543 2221 2233334445555
Q ss_pred EeeC
Q 001457 606 ILKG 609 (1074)
Q Consensus 606 ~L~~ 609 (1074)
++..
T Consensus 87 ~~~~ 90 (129)
T PF13306_consen 87 DIPS 90 (129)
T ss_dssp EETT
T ss_pred ccCc
Confidence 4433
No 321
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=94.72 E-value=0.028 Score=57.95 Aligned_cols=24 Identities=42% Similarity=0.632 Sum_probs=22.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhh
Q 001457 183 INIIGVYGSGGIGKTTLMKQVMKQ 206 (1074)
Q Consensus 183 ~~vi~I~G~gG~GKTtLa~~v~~~ 206 (1074)
..+|+|+|++|+||||||+.+...
T Consensus 6 g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 6 GIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHH
Confidence 579999999999999999999877
No 322
>PRK05480 uridine/cytidine kinase; Provisional
Probab=94.70 E-value=0.028 Score=58.12 Aligned_cols=24 Identities=38% Similarity=0.613 Sum_probs=22.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhh
Q 001457 183 INIIGVYGSGGIGKTTLMKQVMKQ 206 (1074)
Q Consensus 183 ~~vi~I~G~gG~GKTtLa~~v~~~ 206 (1074)
..+|+|.|.+|+||||||+.+...
T Consensus 6 ~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 6 PIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
Confidence 679999999999999999999886
No 323
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=94.69 E-value=0.19 Score=48.60 Aligned_cols=22 Identities=27% Similarity=0.510 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 001457 185 IIGVYGSGGIGKTTLMKQVMKQ 206 (1074)
Q Consensus 185 vi~I~G~gG~GKTtLa~~v~~~ 206 (1074)
||.|+|.+|+||||+|+.+...
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~ 22 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEK 22 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHH
Confidence 5789999999999999999887
No 324
>PRK08233 hypothetical protein; Provisional
Probab=94.69 E-value=0.026 Score=56.87 Aligned_cols=24 Identities=33% Similarity=0.476 Sum_probs=22.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhh
Q 001457 183 INIIGVYGSGGIGKTTLMKQVMKQ 206 (1074)
Q Consensus 183 ~~vi~I~G~gG~GKTtLa~~v~~~ 206 (1074)
..+|+|.|.+|+||||+|+.+...
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 479999999999999999999876
No 325
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.68 E-value=0.014 Score=35.37 Aligned_cols=21 Identities=29% Similarity=0.574 Sum_probs=13.3
Q ss_pred CccEEEeeCCCCcccCccccC
Q 001457 601 ELEVLILKGSRIVELPNGIGT 621 (1074)
Q Consensus 601 ~L~~L~L~~~~i~~lp~~i~~ 621 (1074)
+|++|||++|+++.+|.++++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 466666666666666665544
No 326
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.65 E-value=0.056 Score=53.21 Aligned_cols=112 Identities=18% Similarity=0.171 Sum_probs=56.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhcCCCCeEEEEEecC--CcCHHHHHHHHHHHhccCCCcchH-HHHHHHHHHHHHccCe
Q 001457 184 NIIGVYGSGGIGKTTLMKQVMKQEIPFDKVIFVRVTQ--TPDVKRVQDEIARFLNTELEGDVE-VLRAAFLSERLKRQKR 260 (1074)
Q Consensus 184 ~vi~I~G~gG~GKTtLa~~v~~~~~~F~~~~wv~vs~--~~~~~~~~~~i~~~l~~~~~~~~~-~~~~~~l~~~l~~~k~ 260 (1074)
.+++|+|..|.|||||.+.+..........+++.-.. ..+..+..+ +.++.... -+. +...-.+-..+. .++
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~---~~i~~~~q-LS~G~~qrl~laral~-~~p 101 (163)
T cd03216 27 EVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARR---AGIAMVYQ-LSVGERQMVEIARALA-RNA 101 (163)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHh---cCeEEEEe-cCHHHHHHHHHHHHHh-cCC
Confidence 4999999999999999999988733445555553111 111111111 11111110 111 122222333343 477
Q ss_pred EEEEEcCcccccc---ccccccCCCC-CCCCeEEEEecCChhHH
Q 001457 261 VLIILDDLWGKLD---LAVVGIPYGE-EHKGCKIILTSRFKEVC 300 (1074)
Q Consensus 261 ~LlVlDdv~~~~~---~~~~~~~~~~-~~~gs~iivTTR~~~v~ 300 (1074)
-++++|+--+.-+ .+.+...+.. ...|..||++|.+.+..
T Consensus 102 ~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~ 145 (163)
T cd03216 102 RLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEV 145 (163)
T ss_pred CEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 8899998654311 1112111111 12366788888876643
No 327
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=94.65 E-value=0.13 Score=51.67 Aligned_cols=115 Identities=18% Similarity=0.265 Sum_probs=59.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhcCCCCeEEEEE---ecCCcCHHHHHH------HHHHHhccCC------CcchH-HHH
Q 001457 184 NIIGVYGSGGIGKTTLMKQVMKQEIPFDKVIFVR---VTQTPDVKRVQD------EIARFLNTEL------EGDVE-VLR 247 (1074)
Q Consensus 184 ~vi~I~G~gG~GKTtLa~~v~~~~~~F~~~~wv~---vs~~~~~~~~~~------~i~~~l~~~~------~~~~~-~~~ 247 (1074)
.+++|+|..|+|||||++.+........+.+++. +.. .+...... ++++.++... ..-+. +..
T Consensus 26 ~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~-~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~G~~q 104 (180)
T cd03214 26 EIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLAS-LSPKELARKIAYVPQALELLGLAHLADRPFNELSGGERQ 104 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCc-CCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCHHHHH
Confidence 5999999999999999999998733344444442 221 12222221 1344443221 11111 112
Q ss_pred HHHHHHHHHccCeEEEEEcCcccccc---ccccccCCCC--CCCCeEEEEecCChhHH
Q 001457 248 AAFLSERLKRQKRVLIILDDLWGKLD---LAVVGIPYGE--EHKGCKIILTSRFKEVC 300 (1074)
Q Consensus 248 ~~~l~~~l~~~k~~LlVlDdv~~~~~---~~~~~~~~~~--~~~gs~iivTTR~~~v~ 300 (1074)
.-.+-..+. ..+-++++|+--..-+ .+.+...+.. ...|..||++|.+.+..
T Consensus 105 rl~laral~-~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~ 161 (180)
T cd03214 105 RVLLARALA-QEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLA 161 (180)
T ss_pred HHHHHHHHh-cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 222333443 4778999998653311 1222111111 11256788888876654
No 328
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=94.63 E-value=0.079 Score=56.41 Aligned_cols=22 Identities=36% Similarity=0.605 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 001457 185 IIGVYGSGGIGKTTLMKQVMKQ 206 (1074)
Q Consensus 185 vi~I~G~gG~GKTtLa~~v~~~ 206 (1074)
.|.++|++|+||||+|+.+...
T Consensus 1 LIvl~G~pGSGKST~a~~La~~ 22 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKK 22 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHH
Confidence 3789999999999999999887
No 329
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.62 E-value=0.071 Score=50.05 Aligned_cols=106 Identities=18% Similarity=0.358 Sum_probs=58.4
Q ss_pred CChhHHhcCCCccEEEecCCccCCCCC-CccCCccCCeeeccCCCCCC--CccccCCCCccEEEeeCCCCcccCcc-ccC
Q 001457 546 IPNAFFEHTREIKNLDLSSTNISSLAP-SLPCLEKLRSLHLENTHLND--ASLIREFGELEVLILKGSRIVELPNG-IGT 621 (1074)
Q Consensus 546 ~~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~Lr~L~L~~~~l~~--~~~i~~l~~L~~L~L~~~~i~~lp~~-i~~ 621 (1074)
++...|.++..|+.+.+.. .+..++. .+..+.+|+.+.+.++ +.. ...+..+.+|+.+.+.. .+..++.. +..
T Consensus 3 i~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~ 79 (129)
T PF13306_consen 3 IGNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSN 79 (129)
T ss_dssp E-TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT
T ss_pred ECHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccc
Confidence 4566788888899988875 4666655 5777778888888775 555 44566777788888865 45555544 445
Q ss_pred CCCCCEEeCCCCcCCCCcChhhhcCCCCcCEEEccC
Q 001457 622 VSNLKLLDLSNNLFLQVIPPNVISKLSQLEELYVGN 657 (1074)
Q Consensus 622 L~~L~~L~l~~~~~~~~~p~~~i~~L~~L~~L~l~~ 657 (1074)
+++|+.+++..+ ...++...+.+. +|+.+.+..
T Consensus 80 ~~~l~~i~~~~~--~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 80 CTNLKNIDIPSN--ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp -TTECEEEETTT---BEEHTTTTTT--T--EEE-TT
T ss_pred cccccccccCcc--ccEEchhhhcCC-CceEEEECC
Confidence 778888877553 345555556666 777776544
No 330
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=94.62 E-value=0.69 Score=46.95 Aligned_cols=59 Identities=19% Similarity=0.285 Sum_probs=43.3
Q ss_pred ccCCCCCcccCcchHHHHHHHHHHHhcC----C-------CceeEEEEEcCCCCcHHHHHHHHHhh-cCCC
Q 001457 152 RSIPTPEFVPLKSALEVIKSVMKLLKDN----S-------ISINIIGVYGSGGIGKTTLMKQVMKQ-EIPF 210 (1074)
Q Consensus 152 ~~~~~~~~~~~~~r~~~~~~l~~~l~~~----~-------~~~~vi~I~G~gG~GKTtLa~~v~~~-~~~F 210 (1074)
...|+..+..+.|-++.++++++.+--. + ...+-|..+|++|.|||-+|++...+ ...|
T Consensus 163 DekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTF 233 (424)
T KOG0652|consen 163 DEKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATF 233 (424)
T ss_pred ccCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchH
Confidence 4456677777778888888888776321 0 12567889999999999999998877 4444
No 331
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=94.60 E-value=1.3 Score=51.91 Aligned_cols=192 Identities=16% Similarity=0.152 Sum_probs=106.9
Q ss_pred CcchHHHHHHHHHHHhc---CCCceeEEEEEcCCCCcHHHHHHHHHhh------cCCCCe--EEEEEecCCcCHHHHHHH
Q 001457 162 LKSALEVIKSVMKLLKD---NSISINIIGVYGSGGIGKTTLMKQVMKQ------EIPFDK--VIFVRVTQTPDVKRVQDE 230 (1074)
Q Consensus 162 ~~~r~~~~~~l~~~l~~---~~~~~~vi~I~G~gG~GKTtLa~~v~~~------~~~F~~--~~wv~vs~~~~~~~~~~~ 230 (1074)
..+|+.+..+|-..+.. +...-+.+-|.|.+|+|||..++.|.+. ++.-.. .+.|+.-.-....++...
T Consensus 398 LpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~ 477 (767)
T KOG1514|consen 398 LPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEK 477 (767)
T ss_pred ccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHH
Confidence 44677777777766532 2223459999999999999999999985 222222 334444455568899999
Q ss_pred HHHHhccCCCcchHHHHHHHHHHHHH----ccCeEEEEEcCcccc-----ccccccccCCC-CCCCCeEEEEecCChhH-
Q 001457 231 IARFLNTELEGDVEVLRAAFLSERLK----RQKRVLIILDDLWGK-----LDLAVVGIPYG-EEHKGCKIILTSRFKEV- 299 (1074)
Q Consensus 231 i~~~l~~~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~-----~~~~~~~~~~~-~~~~gs~iivTTR~~~v- 299 (1074)
|...+......+ ......|..++. ..+.++|++|+++.- +.+..| |. ...++||++|.+=....
T Consensus 478 I~~~lsg~~~~~--~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~---fdWpt~~~sKLvvi~IaNTmd 552 (767)
T KOG1514|consen 478 IWEALSGERVTW--DAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNI---FDWPTLKNSKLVVIAIANTMD 552 (767)
T ss_pred HHHhcccCcccH--HHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHH---hcCCcCCCCceEEEEeccccc
Confidence 999887543322 223334444443 357788999987532 222222 11 34568888776532111
Q ss_pred ----------HhhccCCCeEeCCCCCHHHHHHHHHHhcCC--CCCCchhHHHHHHHHHHhCCChHHHHHHHH
Q 001457 300 ----------CDEMESTNYVQVEELTDEDRLILFKKKAGL--PEGTKAFDRAAEEVVRQCGKLPNAIVIIGT 359 (1074)
Q Consensus 300 ----------~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~--~~~~~~~~~~~~~i~~~c~glPLai~~~~~ 359 (1074)
+..++- ..+...+-+.++-.++......+ .......+=++++++..-|..-.|+.+.-+
T Consensus 553 lPEr~l~nrvsSRlg~-tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic~R 623 (767)
T KOG1514|consen 553 LPERLLMNRVSSRLGL-TRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDICRR 623 (767)
T ss_pred CHHHHhccchhhhccc-eeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHHHHH
Confidence 111111 34566666666666665544431 112233344455555544444444444333
No 332
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=94.58 E-value=0.21 Score=53.56 Aligned_cols=85 Identities=18% Similarity=0.212 Sum_probs=46.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhh-cCCCCeEEEEEecCCcCHH--HHHHHHHHHhccCCC-----cchHHHHHHHHHHH
Q 001457 183 INIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVK--RVQDEIARFLNTELE-----GDVEVLRAAFLSER 254 (1074)
Q Consensus 183 ~~vi~I~G~gG~GKTtLa~~v~~~-~~~F~~~~wv~vs~~~~~~--~~~~~i~~~l~~~~~-----~~~~~~~~~~l~~~ 254 (1074)
.++|.++|++|+||||.+..+... ...-..+.+++.. .+... +-+...++..+.... ..........+...
T Consensus 72 ~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D-~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~~~ 150 (272)
T TIGR00064 72 PNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGD-TFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKA 150 (272)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCC-CCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHHH
Confidence 689999999999999999888776 3332345555543 33332 223334455443211 11112222333333
Q ss_pred HHccCeEEEEEcCcc
Q 001457 255 LKRQKRVLIILDDLW 269 (1074)
Q Consensus 255 l~~~k~~LlVlDdv~ 269 (1074)
.. ...=++++|-.-
T Consensus 151 ~~-~~~D~ViIDT~G 164 (272)
T TIGR00064 151 KA-RNIDVVLIDTAG 164 (272)
T ss_pred HH-CCCCEEEEeCCC
Confidence 32 344567778653
No 333
>PRK06762 hypothetical protein; Provisional
Probab=94.57 E-value=0.03 Score=55.41 Aligned_cols=24 Identities=38% Similarity=0.591 Sum_probs=21.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhh
Q 001457 183 INIIGVYGSGGIGKTTLMKQVMKQ 206 (1074)
Q Consensus 183 ~~vi~I~G~gG~GKTtLa~~v~~~ 206 (1074)
..+|.|+|++|+||||+|+.+.+.
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~ 25 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQER 25 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999999999876
No 334
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.57 E-value=0.038 Score=57.00 Aligned_cols=23 Identities=30% Similarity=0.426 Sum_probs=20.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHh
Q 001457 183 INIIGVYGSGGIGKTTLMKQVMK 205 (1074)
Q Consensus 183 ~~vi~I~G~gG~GKTtLa~~v~~ 205 (1074)
.+++.|+|+.|.||||+.+.+..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 48899999999999999999874
No 335
>PRK14974 cell division protein FtsY; Provisional
Probab=94.56 E-value=0.17 Score=55.65 Aligned_cols=54 Identities=24% Similarity=0.237 Sum_probs=34.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhh--cCCCCeEEEEEecCCcCH--HHHHHHHHHHhccC
Q 001457 183 INIIGVYGSGGIGKTTLMKQVMKQ--EIPFDKVIFVRVTQTPDV--KRVQDEIARFLNTE 238 (1074)
Q Consensus 183 ~~vi~I~G~gG~GKTtLa~~v~~~--~~~F~~~~wv~vs~~~~~--~~~~~~i~~~l~~~ 238 (1074)
..+|.++|++|+||||++..++.. ...+ .++.+. .+.+.. .+-++..+..++..
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~l~~~g~-~V~li~-~Dt~R~~a~eqL~~~a~~lgv~ 197 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYYLKKNGF-SVVIAA-GDTFRAGAIEQLEEHAERLGVK 197 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCC-eEEEec-CCcCcHHHHHHHHHHHHHcCCc
Confidence 679999999999999988888776 3334 333443 233322 23344556666543
No 336
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=94.51 E-value=0.13 Score=58.89 Aligned_cols=123 Identities=21% Similarity=0.306 Sum_probs=65.2
Q ss_pred HHHHHHHhcCCCceeEEEEEcCCCCcHHH-HHHHHHhhcCCCCeEEEEEecCCcC--HHHHHHHHHHHhccCCCc-----
Q 001457 170 KSVMKLLKDNSISINIIGVYGSGGIGKTT-LMKQVMKQEIPFDKVIFVRVTQTPD--VKRVQDEIARFLNTELEG----- 241 (1074)
Q Consensus 170 ~~l~~~l~~~~~~~~vi~I~G~gG~GKTt-La~~v~~~~~~F~~~~wv~vs~~~~--~~~~~~~i~~~l~~~~~~----- 241 (1074)
+++++.+.++. ||.|+|-.|+|||| ||+.+|.+.-.=.+ -|-+.+.-. ...+.+.+++.++.....
T Consensus 362 ~~ll~~ir~n~----vvvivgETGSGKTTQl~QyL~edGY~~~G--mIGcTQPRRvAAiSVAkrVa~EM~~~lG~~VGYs 435 (1042)
T KOG0924|consen 362 DQLLSVIRENQ----VVVIVGETGSGKTTQLAQYLYEDGYADNG--MIGCTQPRRVAAISVAKRVAEEMGVTLGDTVGYS 435 (1042)
T ss_pred HHHHHHHhhCc----EEEEEecCCCCchhhhHHHHHhcccccCC--eeeecCchHHHHHHHHHHHHHHhCCccccccceE
Confidence 45666665554 99999999999997 88888887211122 233444433 344556666666432211
Q ss_pred -----chHHH-------HHHHHHHHHHc---cCeEEEEEcCcccccc----c-cccccCCCCCCCCeEEEEecCChhH
Q 001457 242 -----DVEVL-------RAAFLSERLKR---QKRVLIILDDLWGKLD----L-AVVGIPYGEEHKGCKIILTSRFKEV 299 (1074)
Q Consensus 242 -----~~~~~-------~~~~l~~~l~~---~k~~LlVlDdv~~~~~----~-~~~~~~~~~~~~gs~iivTTR~~~v 299 (1074)
.+... .--.|++.|+. .|=-.||+|...+... + .-++..+ .....-|+|||+-.-+.
T Consensus 436 IRFEdvT~~~T~IkymTDGiLLrEsL~d~~L~kYSviImDEAHERslNtDilfGllk~~l-arRrdlKliVtSATm~a 512 (1042)
T KOG0924|consen 436 IRFEDVTSEDTKIKYMTDGILLRESLKDRDLDKYSVIIMDEAHERSLNTDILFGLLKKVL-ARRRDLKLIVTSATMDA 512 (1042)
T ss_pred EEeeecCCCceeEEEeccchHHHHHhhhhhhhheeEEEechhhhcccchHHHHHHHHHHH-HhhccceEEEeeccccH
Confidence 00000 01123333321 3556788898865421 1 1111121 22346799999865443
No 337
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=94.48 E-value=0.18 Score=52.93 Aligned_cols=26 Identities=31% Similarity=0.454 Sum_probs=23.7
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHhh
Q 001457 181 ISINIIGVYGSGGIGKTTLMKQVMKQ 206 (1074)
Q Consensus 181 ~~~~vi~I~G~gG~GKTtLa~~v~~~ 206 (1074)
....+|+|.|.+|+|||||++.+...
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~ 56 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEAL 56 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 34789999999999999999999987
No 338
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=94.46 E-value=0.32 Score=53.59 Aligned_cols=24 Identities=29% Similarity=0.325 Sum_probs=21.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhh
Q 001457 183 INIIGVYGSGGIGKTTLMKQVMKQ 206 (1074)
Q Consensus 183 ~~vi~I~G~gG~GKTtLa~~v~~~ 206 (1074)
...+.++|+.|+||||+|+.+...
T Consensus 21 ~hA~Lf~G~~G~GK~~la~~~a~~ 44 (325)
T PRK08699 21 PNAWLFAGKKGIGKTAFARFAAQA 44 (325)
T ss_pred ceEEEeECCCCCCHHHHHHHHHHH
Confidence 457889999999999999998876
No 339
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=94.44 E-value=0.18 Score=53.78 Aligned_cols=38 Identities=24% Similarity=0.387 Sum_probs=30.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhh-cCCCCeEEEEEecC
Q 001457 183 INIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQ 220 (1074)
Q Consensus 183 ~~vi~I~G~gG~GKTtLa~~v~~~-~~~F~~~~wv~vs~ 220 (1074)
-.++.|.|.+|+||||+|.++... ...=..++|++...
T Consensus 36 gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~Ee 74 (259)
T TIGR03878 36 YSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVES 74 (259)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecC
Confidence 569999999999999999997666 33345778888764
No 340
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=94.41 E-value=0.11 Score=52.19 Aligned_cols=23 Identities=30% Similarity=0.554 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 001457 184 NIIGVYGSGGIGKTTLMKQVMKQ 206 (1074)
Q Consensus 184 ~vi~I~G~gG~GKTtLa~~v~~~ 206 (1074)
.+++|+|..|+|||||++.+...
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~ 51 (178)
T cd03247 29 EKIALLGRSGSGKSTLLQLLTGD 51 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 48999999999999999999887
No 341
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=94.37 E-value=0.16 Score=54.58 Aligned_cols=41 Identities=22% Similarity=0.132 Sum_probs=28.2
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHhh-cCCC--CeEEEEEecCCc
Q 001457 182 SINIIGVYGSGGIGKTTLMKQVMKQ-EIPF--DKVIFVRVTQTP 222 (1074)
Q Consensus 182 ~~~vi~I~G~gG~GKTtLa~~v~~~-~~~F--~~~~wv~vs~~~ 222 (1074)
...+|||.|..|+||||+|+.+..- .... ..+..++...-.
T Consensus 61 ~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~ 104 (290)
T TIGR00554 61 IPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFL 104 (290)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEeccccc
Confidence 3679999999999999999887655 3211 234455544433
No 342
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.36 E-value=0.14 Score=57.25 Aligned_cols=24 Identities=25% Similarity=0.385 Sum_probs=21.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhh
Q 001457 183 INIIGVYGSGGIGKTTLMKQVMKQ 206 (1074)
Q Consensus 183 ~~vi~I~G~gG~GKTtLa~~v~~~ 206 (1074)
..++.++|++|+||||++.++...
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~ 246 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAK 246 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999998765
No 343
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=94.33 E-value=0.056 Score=62.26 Aligned_cols=45 Identities=18% Similarity=0.274 Sum_probs=36.9
Q ss_pred CcchHHHHHHHHHHHh----cCCCceeEEEEEcCCCCcHHHHHHHHHhh
Q 001457 162 LKSALEVIKSVMKLLK----DNSISINIIGVYGSGGIGKTTLMKQVMKQ 206 (1074)
Q Consensus 162 ~~~r~~~~~~l~~~l~----~~~~~~~vi~I~G~gG~GKTtLa~~v~~~ 206 (1074)
+.|.++.++++++.+. .-+..-+++.++|++|+||||||+.+.+-
T Consensus 78 ~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~ 126 (644)
T PRK15455 78 FYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSL 126 (644)
T ss_pred ccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHH
Confidence 5677888999888772 22334689999999999999999999988
No 344
>PRK03839 putative kinase; Provisional
Probab=94.32 E-value=0.034 Score=55.86 Aligned_cols=22 Identities=41% Similarity=0.705 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 001457 185 IIGVYGSGGIGKTTLMKQVMKQ 206 (1074)
Q Consensus 185 vi~I~G~gG~GKTtLa~~v~~~ 206 (1074)
.|.|.|++|+||||+|+.+++.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999987
No 345
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=94.32 E-value=0.075 Score=52.77 Aligned_cols=47 Identities=23% Similarity=0.362 Sum_probs=32.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhh-cCCCCeEEEEEecCCcCHHHHHHHHH
Q 001457 183 INIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKRVQDEIA 232 (1074)
Q Consensus 183 ~~vi~I~G~gG~GKTtLa~~v~~~-~~~F~~~~wv~vs~~~~~~~~~~~i~ 232 (1074)
..+|+|-||-|+||||||+.+.++ + |. .++-.+.+++=......++-
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~--~~-~~~E~vednp~L~~FY~d~~ 51 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLG--FK-VFYELVEDNPFLDLFYEDPE 51 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhC--Cc-eeeecccCChHHHHHHHhHH
Confidence 468999999999999999999988 3 22 33344555544444444443
No 346
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=94.30 E-value=0.2 Score=51.32 Aligned_cols=86 Identities=24% Similarity=0.433 Sum_probs=52.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhcCCCCeEEEEEecCC-cCHHHHHHHHHHHhcc-------CCCcchHHHH------HH
Q 001457 184 NIIGVYGSGGIGKTTLMKQVMKQEIPFDKVIFVRVTQT-PDVKRVQDEIARFLNT-------ELEGDVEVLR------AA 249 (1074)
Q Consensus 184 ~vi~I~G~gG~GKTtLa~~v~~~~~~F~~~~wv~vs~~-~~~~~~~~~i~~~l~~-------~~~~~~~~~~------~~ 249 (1074)
.-++|.|.+|+|||+|+..+.+... -+.++++-+.+. ..+.++.+++...-.. ....++...+ .-
T Consensus 16 qr~~I~g~~g~GKt~Ll~~i~~~~~-~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~~~~a~ 94 (215)
T PF00006_consen 16 QRIGIFGGAGVGKTVLLQEIANNQD-ADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRAPYTAL 94 (215)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHCT-TTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHHHHHHH
T ss_pred CEEEEEcCcccccchhhHHHHhccc-ccceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhhhccch
Confidence 4688999999999999999998832 344588888765 3455666555432110 1111111111 11
Q ss_pred HHHHHHH-ccCeEEEEEcCccc
Q 001457 250 FLSERLK-RQKRVLIILDDLWG 270 (1074)
Q Consensus 250 ~l~~~l~-~~k~~LlVlDdv~~ 270 (1074)
.+-+++. +++..|+++||+..
T Consensus 95 t~AEyfrd~G~dVlli~Dsltr 116 (215)
T PF00006_consen 95 TIAEYFRDQGKDVLLIIDSLTR 116 (215)
T ss_dssp HHHHHHHHTTSEEEEEEETHHH
T ss_pred hhhHHHhhcCCceeehhhhhHH
Confidence 2233332 58999999999853
No 347
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=94.29 E-value=0.18 Score=48.68 Aligned_cols=115 Identities=20% Similarity=0.216 Sum_probs=59.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh--cCCCCeEE--EEEecCCcCHHHHHHHHH----HHhccCC--C-cchH------HH
Q 001457 184 NIIGVYGSGGIGKTTLMKQVMKQ--EIPFDKVI--FVRVTQTPDVKRVQDEIA----RFLNTEL--E-GDVE------VL 246 (1074)
Q Consensus 184 ~vi~I~G~gG~GKTtLa~~v~~~--~~~F~~~~--wv~vs~~~~~~~~~~~i~----~~l~~~~--~-~~~~------~~ 246 (1074)
..|-|++..|.||||+|-...-+ ...+...+ |+.-.....-..++..+- .+.+... . .... ..
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~~~~gE~~~l~~l~~v~~~~~g~~~~~~~~~~~~~~~~a~~ 82 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGGWKYGELKALERLPNIEIHRMGRGFFWTTENDEEDIAAAAE 82 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCCCccCHHHHHHhCCCcEEEECCCCCccCCCChHHHHHHHHH
Confidence 47888999999999999887777 33333322 232221223333333320 0001100 0 1111 11
Q ss_pred HHHHHHHHHHccCeEEEEEcCcccc-----ccccccccCCCCCCCCeEEEEecCChh
Q 001457 247 RAAFLSERLKRQKRVLIILDDLWGK-----LDLAVVGIPYGEEHKGCKIILTSRFKE 298 (1074)
Q Consensus 247 ~~~~l~~~l~~~k~~LlVlDdv~~~-----~~~~~~~~~~~~~~~gs~iivTTR~~~ 298 (1074)
.....++.+..+.-=|+|||++-.. .+.+++...+.....+.-||+|.|+..
T Consensus 83 ~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 83 GWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 2233344444566779999997543 222333333333445778999999754
No 348
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=94.29 E-value=0.14 Score=62.10 Aligned_cols=82 Identities=16% Similarity=0.246 Sum_probs=56.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhh-cCCCCeEEEEEecCCcCHHHHHHHHHHHhccCCC------cchHHHHHHHHHHHH
Q 001457 183 INIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKRVQDEIARFLNTELE------GDVEVLRAAFLSERL 255 (1074)
Q Consensus 183 ~~vi~I~G~gG~GKTtLa~~v~~~-~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~------~~~~~~~~~~l~~~l 255 (1074)
-+++-|+|.+|+||||||.++... ...-..++|++..+.++. ..+++++.+.+ ....+.....+.+.+
T Consensus 60 GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId~E~t~~~-----~~A~~lGvDl~~llv~~~~~~E~~l~~i~~lv 134 (790)
T PRK09519 60 GRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDP-----DYAKKLGVDTDSLLVSQPDTGEQALEIADMLI 134 (790)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchhH-----HHHHHcCCChhHeEEecCCCHHHHHHHHHHHh
Confidence 579999999999999999886665 333366899998887774 36666765432 122233444455555
Q ss_pred HccCeEEEEEcCcc
Q 001457 256 KRQKRVLIILDDLW 269 (1074)
Q Consensus 256 ~~~k~~LlVlDdv~ 269 (1074)
+.++--|||+|.+.
T Consensus 135 ~~~~~~LVVIDSI~ 148 (790)
T PRK09519 135 RSGALDIVVIDSVA 148 (790)
T ss_pred hcCCCeEEEEcchh
Confidence 55677789999875
No 349
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.28 E-value=0.12 Score=51.25 Aligned_cols=33 Identities=27% Similarity=0.506 Sum_probs=25.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhcCCCCeEEEE
Q 001457 184 NIIGVYGSGGIGKTTLMKQVMKQEIPFDKVIFV 216 (1074)
Q Consensus 184 ~vi~I~G~gG~GKTtLa~~v~~~~~~F~~~~wv 216 (1074)
.+++|+|..|.|||||.+.+..-.....+.+++
T Consensus 29 ~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~ 61 (171)
T cd03228 29 EKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILI 61 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEE
Confidence 599999999999999999998872233444443
No 350
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=94.26 E-value=0.044 Score=58.40 Aligned_cols=23 Identities=35% Similarity=0.299 Sum_probs=18.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 001457 184 NIIGVYGSGGIGKTTLMKQVMKQ 206 (1074)
Q Consensus 184 ~vi~I~G~gG~GKTtLa~~v~~~ 206 (1074)
+.|.|+|.+|+||||+|+.+...
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~ 24 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKY 24 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Confidence 47899999999999999999987
No 351
>PRK00625 shikimate kinase; Provisional
Probab=94.23 E-value=0.038 Score=54.65 Aligned_cols=22 Identities=32% Similarity=0.306 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 001457 185 IIGVYGSGGIGKTTLMKQVMKQ 206 (1074)
Q Consensus 185 vi~I~G~gG~GKTtLa~~v~~~ 206 (1074)
.|.++||+|+||||+++.+.+.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~ 23 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKF 23 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999887
No 352
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=94.21 E-value=0.15 Score=57.73 Aligned_cols=87 Identities=21% Similarity=0.335 Sum_probs=48.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhcCCCCeEEEEEecCCcCHHHHHHHHHHHh-----cc-CCCcchHH------HHHHHH
Q 001457 184 NIIGVYGSGGIGKTTLMKQVMKQEIPFDKVIFVRVTQTPDVKRVQDEIARFL-----NT-ELEGDVEV------LRAAFL 251 (1074)
Q Consensus 184 ~vi~I~G~gG~GKTtLa~~v~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l-----~~-~~~~~~~~------~~~~~l 251 (1074)
..++|+|..|+|||||++.+.........++++.-....++.++........ .. .....+.. ..+-.+
T Consensus 166 qri~I~G~SGsGKTTLL~~Ia~l~~pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~~a~~i 245 (450)
T PRK06002 166 QRIGIFAGSGVGKSTLLAMLARADAFDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPLTATAI 245 (450)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 4899999999999999998876633333444443223344444444333322 11 01111111 112233
Q ss_pred HHHHH-ccCeEEEEEcCccc
Q 001457 252 SERLK-RQKRVLIILDDLWG 270 (1074)
Q Consensus 252 ~~~l~-~~k~~LlVlDdv~~ 270 (1074)
-+++. .++.+|+++||+-.
T Consensus 246 AEyfrd~G~~Vll~~DslTr 265 (450)
T PRK06002 246 AEYFRDRGENVLLIVDSVTR 265 (450)
T ss_pred HHHHHHcCCCEEEeccchHH
Confidence 34442 58999999999864
No 353
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=94.19 E-value=0.013 Score=55.91 Aligned_cols=23 Identities=22% Similarity=0.388 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 001457 184 NIIGVYGSGGIGKTTLMKQVMKQ 206 (1074)
Q Consensus 184 ~vi~I~G~gG~GKTtLa~~v~~~ 206 (1074)
.-|.|+|..|+||+++|+.++..
T Consensus 22 ~pvli~GE~GtGK~~~A~~lh~~ 44 (138)
T PF14532_consen 22 SPVLITGEPGTGKSLLARALHRY 44 (138)
T ss_dssp S-EEEECCTTSSHHHHHHCCHHT
T ss_pred CcEEEEcCCCCCHHHHHHHHHhh
Confidence 46789999999999999999888
No 354
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=94.18 E-value=0.081 Score=49.28 Aligned_cols=24 Identities=29% Similarity=0.445 Sum_probs=22.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhh
Q 001457 183 INIIGVYGSGGIGKTTLMKQVMKQ 206 (1074)
Q Consensus 183 ~~vi~I~G~gG~GKTtLa~~v~~~ 206 (1074)
-.+|.+.|.-|+||||+++.+...
T Consensus 22 ~~~i~l~G~lGaGKTtl~~~l~~~ 45 (133)
T TIGR00150 22 GTVVLLKGDLGAGKTTLVQGLLQG 45 (133)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 348999999999999999999987
No 355
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=94.18 E-value=0.039 Score=55.96 Aligned_cols=24 Identities=29% Similarity=0.466 Sum_probs=22.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhh
Q 001457 183 INIIGVYGSGGIGKTTLMKQVMKQ 206 (1074)
Q Consensus 183 ~~vi~I~G~gG~GKTtLa~~v~~~ 206 (1074)
.++|.|+|++|+||||+|+.+...
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~~ 26 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVEK 26 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 679999999999999999999865
No 356
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=94.14 E-value=0.17 Score=55.26 Aligned_cols=84 Identities=23% Similarity=0.271 Sum_probs=54.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhh-cCCCCeEEEEEecCCcCHHHHHHHHHHHhccCCCcc--hHHHHHHHHHHHHHccC
Q 001457 183 INIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKRVQDEIARFLNTELEGD--VEVLRAAFLSERLKRQK 259 (1074)
Q Consensus 183 ~~vi~I~G~gG~GKTtLa~~v~~~-~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~--~~~~~~~~l~~~l~~~k 259 (1074)
-.+|.|-|-+|+|||||.-++..+ ...- .+.||+-.+ +..++ +--+++++...+.. ..+-..+.+.+.+.+.+
T Consensus 93 Gs~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVsGEE--S~~Qi-klRA~RL~~~~~~l~l~aEt~~e~I~~~l~~~~ 168 (456)
T COG1066 93 GSVILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVSGEE--SLQQI-KLRADRLGLPTNNLYLLAETNLEDIIAELEQEK 168 (456)
T ss_pred ccEEEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEeCCc--CHHHH-HHHHHHhCCCccceEEehhcCHHHHHHHHHhcC
Confidence 359999999999999999999998 3222 677776443 33333 23355665433211 11233445556666678
Q ss_pred eEEEEEcCccc
Q 001457 260 RVLIILDDLWG 270 (1074)
Q Consensus 260 ~~LlVlDdv~~ 270 (1074)
.-++|+|-+..
T Consensus 169 p~lvVIDSIQT 179 (456)
T COG1066 169 PDLVVIDSIQT 179 (456)
T ss_pred CCEEEEeccce
Confidence 99999998854
No 357
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.14 E-value=0.2 Score=55.12 Aligned_cols=86 Identities=20% Similarity=0.125 Sum_probs=48.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhh-cCCCCeEEEEEecCCc-CHHHHHHHHHHHhccCCCc-chHHHHHHHHHHHHH-cc
Q 001457 183 INIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTP-DVKRVQDEIARFLNTELEG-DVEVLRAAFLSERLK-RQ 258 (1074)
Q Consensus 183 ~~vi~I~G~gG~GKTtLa~~v~~~-~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~~-~~~~~~~~~l~~~l~-~~ 258 (1074)
.++|.++|+.|+||||++..+... ...-..+.+|+..... ...+-++..++.++..... .........+ +.+. .+
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al-~~l~~~~ 284 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAV-QYMTYVN 284 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHH-HHHHhcC
Confidence 679999999999999999888876 2222346666654321 2244455555555543321 1222332222 2232 12
Q ss_pred CeEEEEEcCcc
Q 001457 259 KRVLIILDDLW 269 (1074)
Q Consensus 259 k~~LlVlDdv~ 269 (1074)
..=+|++|-.-
T Consensus 285 ~~D~VLIDTAG 295 (407)
T PRK12726 285 CVDHILIDTVG 295 (407)
T ss_pred CCCEEEEECCC
Confidence 44667778654
No 358
>PRK04040 adenylate kinase; Provisional
Probab=94.12 E-value=0.042 Score=55.29 Aligned_cols=24 Identities=29% Similarity=0.677 Sum_probs=22.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhh
Q 001457 183 INIIGVYGSGGIGKTTLMKQVMKQ 206 (1074)
Q Consensus 183 ~~vi~I~G~gG~GKTtLa~~v~~~ 206 (1074)
..+|+|+|++|+||||+++.+...
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~ 25 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEK 25 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHH
Confidence 368999999999999999999887
No 359
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.10 E-value=0.12 Score=50.62 Aligned_cols=111 Identities=20% Similarity=0.254 Sum_probs=57.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhcCCCCeEEEEEecCCc--CHHHHHHHHHHHhccCCCc-chHHHHHHHHHHHHHccCe
Q 001457 184 NIIGVYGSGGIGKTTLMKQVMKQEIPFDKVIFVRVTQTP--DVKRVQDEIARFLNTELEG-DVEVLRAAFLSERLKRQKR 260 (1074)
Q Consensus 184 ~vi~I~G~gG~GKTtLa~~v~~~~~~F~~~~wv~vs~~~--~~~~~~~~i~~~l~~~~~~-~~~~~~~~~l~~~l~~~k~ 260 (1074)
.+++|+|..|.|||||++.+...-......+++.-.... ..... ...++....- ..+..+. .+...+. ...
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~----~~~i~~~~qlS~G~~~r~-~l~~~l~-~~~ 99 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEEL----RRRIGYVPQLSGGQRQRV-ALARALL-LNP 99 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHH----HhceEEEeeCCHHHHHHH-HHHHHHh-cCC
Confidence 599999999999999999998873334555555322111 11111 1111111000 1112222 2333343 467
Q ss_pred EEEEEcCccccc------cccccccCCCCCCCCeEEEEecCChhHHhh
Q 001457 261 VLIILDDLWGKL------DLAVVGIPYGEEHKGCKIILTSRFKEVCDE 302 (1074)
Q Consensus 261 ~LlVlDdv~~~~------~~~~~~~~~~~~~~gs~iivTTR~~~v~~~ 302 (1074)
-++++|+....- .+.++...+.. .+..||++|.+.+....
T Consensus 100 ~i~ilDEp~~~lD~~~~~~l~~~l~~~~~--~~~tii~~sh~~~~~~~ 145 (157)
T cd00267 100 DLLLLDEPTSGLDPASRERLLELLRELAE--EGRTVIIVTHDPELAEL 145 (157)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHHH--CCCEEEEEeCCHHHHHH
Confidence 889999865431 12121112111 25678888877766543
No 360
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.09 E-value=0.4 Score=53.85 Aligned_cols=83 Identities=11% Similarity=0.137 Sum_probs=47.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhh-c----CCCCeEEEEEecCCcCH--HHHHHHHHHHhccCCCcchH-HHHHHHHHHH
Q 001457 183 INIIGVYGSGGIGKTTLMKQVMKQ-E----IPFDKVIFVRVTQTPDV--KRVQDEIARFLNTELEGDVE-VLRAAFLSER 254 (1074)
Q Consensus 183 ~~vi~I~G~gG~GKTtLa~~v~~~-~----~~F~~~~wv~vs~~~~~--~~~~~~i~~~l~~~~~~~~~-~~~~~~l~~~ 254 (1074)
.++|.++|+.|+||||.+..+... . .+-..+..+++. .+.. ..-++..++.++.+...... ......+. .
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~D-t~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~-~ 251 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITID-NYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEIT-Q 251 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEecc-CccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHH-H
Confidence 579999999999999999888766 2 122344455544 3333 22344555556554322222 22222222 2
Q ss_pred HHccCeEEEEEcCcc
Q 001457 255 LKRQKRVLIILDDLW 269 (1074)
Q Consensus 255 l~~~k~~LlVlDdv~ 269 (1074)
+ .+.=+|++|..-
T Consensus 252 ~--~~~DlVLIDTaG 264 (388)
T PRK12723 252 S--KDFDLVLVDTIG 264 (388)
T ss_pred h--CCCCEEEEcCCC
Confidence 2 345678888764
No 361
>PTZ00088 adenylate kinase 1; Provisional
Probab=94.08 E-value=0.049 Score=56.53 Aligned_cols=22 Identities=32% Similarity=0.579 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 001457 185 IIGVYGSGGIGKTTLMKQVMKQ 206 (1074)
Q Consensus 185 vi~I~G~gG~GKTtLa~~v~~~ 206 (1074)
-|.|.|++|+||||+|+.+...
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~ 29 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKK 29 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3889999999999999999876
No 362
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=94.05 E-value=0.25 Score=59.51 Aligned_cols=156 Identities=16% Similarity=0.199 Sum_probs=89.0
Q ss_pred CCcccCcchHHHHHHHHHHHhcCCCceeEEEEEcCCCCcHHHHHHHHHhh--cCCC-----CeEEEEEecCCcCHHHHHH
Q 001457 157 PEFVPLKSALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ--EIPF-----DKVIFVRVTQTPDVKRVQD 229 (1074)
Q Consensus 157 ~~~~~~~~r~~~~~~l~~~l~~~~~~~~vi~I~G~gG~GKTtLa~~v~~~--~~~F-----~~~~wv~vs~~~~~~~~~~ 229 (1074)
..+.++.||++++..+++.|.....+.+| ++|.+|+|||++|.-++.+ .+.- +..++. -
T Consensus 167 gklDPvIGRd~EI~r~iqIL~RR~KNNPv--LiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~s------------L 232 (786)
T COG0542 167 GKLDPVIGRDEEIRRTIQILSRRTKNNPV--LVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYS------------L 232 (786)
T ss_pred CCCCCCcChHHHHHHHHHHHhccCCCCCe--EecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEE------------e
Confidence 44556789999999999999766544444 6899999999988777766 2221 112221 0
Q ss_pred HHHH-HhccCCCcchHHHHHHHHHHHHHccCeEEEEEcCccccc--------ccc--ccccCCCCCCCCeEEEEecCChh
Q 001457 230 EIAR-FLNTELEGDVEVLRAAFLSERLKRQKRVLIILDDLWGKL--------DLA--VVGIPYGEEHKGCKIILTSRFKE 298 (1074)
Q Consensus 230 ~i~~-~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--------~~~--~~~~~~~~~~~gs~iivTTR~~~ 298 (1074)
++.. ..|....+ .-+++...+.+.++..++..+.+|.+.... ..+ .+..|-...+.--.|-.||-++.
T Consensus 233 D~g~LvAGakyRG-eFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARGeL~~IGATT~~EY 311 (786)
T COG0542 233 DLGSLVAGAKYRG-EFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARGELRCIGATTLDEY 311 (786)
T ss_pred cHHHHhccccccC-cHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcCCeEEEEeccHHHH
Confidence 1111 11222222 224555666666665569999999876421 122 12222112222224555665443
Q ss_pred H------HhhccCCCeEeCCCCCHHHHHHHHHHhc
Q 001457 299 V------CDEMESTNYVQVEELTDEDRLILFKKKA 327 (1074)
Q Consensus 299 v------~~~~~~~~~~~l~~L~~~~~~~lf~~~a 327 (1074)
- +.-...-+.+.+..-+.+++..+++...
T Consensus 312 Rk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk 346 (786)
T COG0542 312 RKYIEKDAALERRFQKVLVDEPSVEDTIAILRGLK 346 (786)
T ss_pred HHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHHH
Confidence 2 1111222578889999999998886554
No 363
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=94.02 E-value=0.062 Score=54.52 Aligned_cols=32 Identities=22% Similarity=0.466 Sum_probs=25.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh-cCCCCeEEE
Q 001457 184 NIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIF 215 (1074)
Q Consensus 184 ~vi~I~G~gG~GKTtLa~~v~~~-~~~F~~~~w 215 (1074)
.+++|+|..|+|||||++.+..- +..++.+.|
T Consensus 34 e~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~ 66 (252)
T COG1124 34 ETLGIVGESGSGKSTLARLLAGLEKPSSGSILL 66 (252)
T ss_pred CEEEEEcCCCCCHHHHHHHHhcccCCCCceEEE
Confidence 48999999999999999999887 444444444
No 364
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=93.96 E-value=0.1 Score=55.88 Aligned_cols=85 Identities=22% Similarity=0.367 Sum_probs=48.9
Q ss_pred HHHHHHHHhcCCCceeEEEEEcCCCCcHHHHHHHHHhh--cCCCCeEEEEEecCCcCHHHHHHHHHHHhccCCCcchHHH
Q 001457 169 IKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ--EIPFDKVIFVRVTQTPDVKRVQDEIARFLNTELEGDVEVL 246 (1074)
Q Consensus 169 ~~~l~~~l~~~~~~~~vi~I~G~gG~GKTtLa~~v~~~--~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~ 246 (1074)
...+++.+.... +-|.++|+.|+|||++++..... ...| ...-++.+...+...+++.+-..+.... +.
T Consensus 22 ~~~ll~~l~~~~---~pvLl~G~~GtGKT~li~~~l~~l~~~~~-~~~~~~~s~~Tts~~~q~~ie~~l~k~~-~~---- 92 (272)
T PF12775_consen 22 YSYLLDLLLSNG---RPVLLVGPSGTGKTSLIQNFLSSLDSDKY-LVITINFSAQTTSNQLQKIIESKLEKRR-GR---- 92 (272)
T ss_dssp HHHHHHHHHHCT---EEEEEESSTTSSHHHHHHHHHHCSTTCCE-EEEEEES-TTHHHHHHHHCCCTTECECT-TE----
T ss_pred HHHHHHHHHHcC---CcEEEECCCCCchhHHHHhhhccCCcccc-ceeEeeccCCCCHHHHHHHHhhcEEcCC-CC----
Confidence 345666666554 45689999999999999998876 2222 2344566655444444332211111100 00
Q ss_pred HHHHHHHHH--HccCeEEEEEcCcc
Q 001457 247 RAAFLSERL--KRQKRVLIILDDLW 269 (1074)
Q Consensus 247 ~~~~l~~~l--~~~k~~LlVlDdv~ 269 (1074)
.+ ..+|+.++.+||+.
T Consensus 93 -------~~gP~~~k~lv~fiDDlN 110 (272)
T PF12775_consen 93 -------VYGPPGGKKLVLFIDDLN 110 (272)
T ss_dssp -------EEEEESSSEEEEEEETTT
T ss_pred -------CCCCCCCcEEEEEecccC
Confidence 00 13788899999985
No 365
>PRK05439 pantothenate kinase; Provisional
Probab=93.96 E-value=0.35 Score=52.39 Aligned_cols=26 Identities=31% Similarity=0.354 Sum_probs=23.1
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHhh
Q 001457 181 ISINIIGVYGSGGIGKTTLMKQVMKQ 206 (1074)
Q Consensus 181 ~~~~vi~I~G~gG~GKTtLa~~v~~~ 206 (1074)
...-+|+|.|.+|+||||+|+.+...
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~ 109 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQAL 109 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 34679999999999999999998776
No 366
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=93.93 E-value=0.071 Score=52.19 Aligned_cols=23 Identities=39% Similarity=0.525 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 001457 184 NIIGVYGSGGIGKTTLMKQVMKQ 206 (1074)
Q Consensus 184 ~vi~I~G~gG~GKTtLa~~v~~~ 206 (1074)
+.|.+.|.+|+||||+|+.+...
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~ 24 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKE 24 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHH
Confidence 46788999999999999998877
No 367
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=93.92 E-value=5 Score=44.81 Aligned_cols=55 Identities=20% Similarity=0.186 Sum_probs=37.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhh-cCCCCeEEEEEecCCcC--HHHHHHHHHHHhccC
Q 001457 183 INIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPD--VKRVQDEIARFLNTE 238 (1074)
Q Consensus 183 ~~vi~I~G~gG~GKTtLa~~v~~~-~~~F~~~~wv~vs~~~~--~~~~~~~i~~~l~~~ 238 (1074)
..||-.+|.-|.||||-|-++.+. ++ ....+-+...+.+. ..+-++.++.+.+.+
T Consensus 100 P~vImmvGLQGsGKTTt~~KLA~~lkk-~~~kvllVaaD~~RpAA~eQL~~La~q~~v~ 157 (451)
T COG0541 100 PTVILMVGLQGSGKTTTAGKLAKYLKK-KGKKVLLVAADTYRPAAIEQLKQLAEQVGVP 157 (451)
T ss_pred CeEEEEEeccCCChHhHHHHHHHHHHH-cCCceEEEecccCChHHHHHHHHHHHHcCCc
Confidence 679999999999999999888887 44 44444444444443 334455666666543
No 368
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=93.92 E-value=0.18 Score=49.62 Aligned_cols=82 Identities=20% Similarity=0.190 Sum_probs=46.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhcCCCCeEEEEEecCCcCHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHcc-CeEEE
Q 001457 185 IIGVYGSGGIGKTTLMKQVMKQEIPFDKVIFVRVTQTPDVKRVQDEIARFLNTELEGDVEVLRAAFLSERLKRQ-KRVLI 263 (1074)
Q Consensus 185 vi~I~G~gG~GKTtLa~~v~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~-k~~Ll 263 (1074)
++.|.|.+|+|||++|.++... ....++|+.-.+.++. ++...|.+............+....+.+.+... +.-.|
T Consensus 1 ~~li~G~~~sGKS~~a~~~~~~--~~~~~~y~at~~~~d~-em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~~~~~~V 77 (169)
T cd00544 1 IILVTGGARSGKSRFAERLAAE--LGGPVTYIATAEAFDD-EMAERIARHRKRRPAHWRTIETPRDLVSALKELDPGDVV 77 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHHh--cCCCeEEEEccCcCCH-HHHHHHHHHHHhCCCCceEeecHHHHHHHHHhcCCCCEE
Confidence 3679999999999999998765 2246778877776654 344444332211122222222233344444321 33479
Q ss_pred EEcCcc
Q 001457 264 ILDDLW 269 (1074)
Q Consensus 264 VlDdv~ 269 (1074)
++|.+.
T Consensus 78 LIDclt 83 (169)
T cd00544 78 LIDCLT 83 (169)
T ss_pred EEEcHh
Confidence 999863
No 369
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=93.91 E-value=0.21 Score=51.98 Aligned_cols=120 Identities=18% Similarity=0.201 Sum_probs=63.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhh-cCCCCeEEEEEecC-----CcCHHHHHHHHHHHhccCCC------cc-hHHHHHH
Q 001457 183 INIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQ-----TPDVKRVQDEIARFLNTELE------GD-VEVLRAA 249 (1074)
Q Consensus 183 ~~vi~I~G~gG~GKTtLa~~v~~~-~~~F~~~~wv~vs~-----~~~~~~~~~~i~~~l~~~~~------~~-~~~~~~~ 249 (1074)
-.+++|||-+|+||||+++.+..- +-....+.| .-.+ .....+-..++++..+...+ .. +--++..
T Consensus 39 ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f-~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQR 117 (268)
T COG4608 39 GETLGLVGESGCGKSTLGRLILGLEEPTSGEILF-EGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQR 117 (268)
T ss_pred CCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEE-cCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhh
Confidence 359999999999999999999987 333333333 2111 12233344555665553221 11 1111111
Q ss_pred -HHHHHHHccCeEEEEEcCcccccc------ccccccCCCCCCCCeEEEEecCChhHHhhccC
Q 001457 250 -FLSERLKRQKRVLIILDDLWGKLD------LAVVGIPYGEEHKGCKIILTSRFKEVCDEMES 305 (1074)
Q Consensus 250 -~l~~~l~~~k~~LlVlDdv~~~~~------~~~~~~~~~~~~~gs~iivTTR~~~v~~~~~~ 305 (1074)
.+...+. -+.-++|.|.--+.-+ .-.+...+ ....|-..+..|-+-.|+..+..
T Consensus 118 i~IARALa-l~P~liV~DEpvSaLDvSiqaqIlnLL~dl-q~~~~lt~lFIsHDL~vv~~isd 178 (268)
T COG4608 118 IGIARALA-LNPKLIVADEPVSALDVSVQAQILNLLKDL-QEELGLTYLFISHDLSVVRYISD 178 (268)
T ss_pred HHHHHHHh-hCCcEEEecCchhhcchhHHHHHHHHHHHH-HHHhCCeEEEEEEEHHhhhhhcc
Confidence 2233343 5888999997543211 11111111 11235667788877777665543
No 370
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.90 E-value=0.33 Score=58.75 Aligned_cols=83 Identities=17% Similarity=0.189 Sum_probs=47.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhh--cCCC-CeEEEEEecCCcC--HHHHHHHHHHHhccCCCcc-hHHHHHHHHHHHHH
Q 001457 183 INIIGVYGSGGIGKTTLMKQVMKQ--EIPF-DKVIFVRVTQTPD--VKRVQDEIARFLNTELEGD-VEVLRAAFLSERLK 256 (1074)
Q Consensus 183 ~~vi~I~G~gG~GKTtLa~~v~~~--~~~F-~~~~wv~vs~~~~--~~~~~~~i~~~l~~~~~~~-~~~~~~~~l~~~l~ 256 (1074)
-+||+++|+.|+||||.+.++... ..+. ..+..++. +.+. ..+-++...+.++...... ........+ +.+.
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~-Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al-~~~~ 262 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTT-DSFRIGALEQLRIYGRILGVPVHAVKDAADLRFAL-AALG 262 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecC-cccchHHHHHHHHHHHhCCCCccccCCHHHHHHHH-HHhc
Confidence 469999999999999988888766 2222 34455543 3333 3445555566666543321 222332233 3343
Q ss_pred ccCeEEEEEcCcc
Q 001457 257 RQKRVLIILDDLW 269 (1074)
Q Consensus 257 ~~k~~LlVlDdv~ 269 (1074)
++ =+|++|-.-
T Consensus 263 -~~-D~VLIDTAG 273 (767)
T PRK14723 263 -DK-HLVLIDTVG 273 (767)
T ss_pred -CC-CEEEEeCCC
Confidence 33 477778654
No 371
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=93.88 E-value=0.22 Score=56.95 Aligned_cols=87 Identities=21% Similarity=0.388 Sum_probs=56.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh--cCCCCeEEEEEecCCc-CHHHHHHHHHHHhccC-------CCcchH------HHH
Q 001457 184 NIIGVYGSGGIGKTTLMKQVMKQ--EIPFDKVIFVRVTQTP-DVKRVQDEIARFLNTE-------LEGDVE------VLR 247 (1074)
Q Consensus 184 ~vi~I~G~gG~GKTtLa~~v~~~--~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~-------~~~~~~------~~~ 247 (1074)
.-++|.|.+|+|||||+.++... +.+-+.++++-+.+.. .+.++..++...-... ....+. ...
T Consensus 144 QR~gIfa~~G~GKt~Ll~~~~~~~~~~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a~~~ 223 (461)
T PRK12597 144 GKTGLFGGAGVGKTVLMMELIFNISKQHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRVVLT 223 (461)
T ss_pred CEEEeecCCCCChhHHHHHHHHHHHhhCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHHHHH
Confidence 47899999999999999998887 4566888888776543 3455555554421110 111111 112
Q ss_pred HHHHHHHHH-c-cCeEEEEEcCccc
Q 001457 248 AAFLSERLK-R-QKRVLIILDDLWG 270 (1074)
Q Consensus 248 ~~~l~~~l~-~-~k~~LlVlDdv~~ 270 (1074)
+..+-+++. . ++++|+++|++-.
T Consensus 224 a~tiAEyfrd~~G~~VLl~~DslTR 248 (461)
T PRK12597 224 GLTIAEYLRDEEKEDVLLFIDNIFR 248 (461)
T ss_pred HHHHHHHHHHhcCCceEEEeccchH
Confidence 234455554 3 7999999999854
No 372
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=93.87 E-value=0.041 Score=54.93 Aligned_cols=22 Identities=41% Similarity=0.596 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 001457 185 IIGVYGSGGIGKTTLMKQVMKQ 206 (1074)
Q Consensus 185 vi~I~G~gG~GKTtLa~~v~~~ 206 (1074)
+|+|.|.+|+||||+|+.+...
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~ 22 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRI 22 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999886
No 373
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=93.83 E-value=0.25 Score=50.19 Aligned_cols=38 Identities=29% Similarity=0.540 Sum_probs=26.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh---cCCC--------CeEEEEEecCC
Q 001457 184 NIIGVYGSGGIGKTTLMKQVMKQ---EIPF--------DKVIFVRVTQT 221 (1074)
Q Consensus 184 ~vi~I~G~gG~GKTtLa~~v~~~---~~~F--------~~~~wv~vs~~ 221 (1074)
.++.|+|.+|+||||++..+... ...| ..+.|++....
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~ 81 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS 81 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC
Confidence 48899999999999999998877 2222 35678776665
No 374
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=93.81 E-value=0.042 Score=56.23 Aligned_cols=22 Identities=45% Similarity=0.848 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 001457 185 IIGVYGSGGIGKTTLMKQVMKQ 206 (1074)
Q Consensus 185 vi~I~G~gG~GKTtLa~~v~~~ 206 (1074)
+|+|.|.+|+||||+|+.+...
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998775
No 375
>PTZ00494 tuzin-like protein; Provisional
Probab=93.80 E-value=3.5 Score=45.92 Aligned_cols=161 Identities=14% Similarity=0.203 Sum_probs=88.4
Q ss_pred cccCcchHHHHHHHHHHHhcCCCceeEEEEEcCCCCcHHHHHHHHHhhcCCCCeEEEEEecCCcCHHHHHHHHHHHhccC
Q 001457 159 FVPLKSALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQEIPFDKVIFVRVTQTPDVKRVQDEIARFLNTE 238 (1074)
Q Consensus 159 ~~~~~~r~~~~~~l~~~l~~~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~ 238 (1074)
++..+..+..+.+++..+... ..+++.+.|.-|.||++|.+......+ -..++|.|..+.| -++.|.+.++.+
T Consensus 373 ~V~R~~eE~~vRqvL~qld~a--HPRIvV~TG~~GcGKSslcRsAvrkE~--~paV~VDVRg~ED---tLrsVVKALgV~ 445 (664)
T PTZ00494 373 EVRREDEEALVRSVLTQMAPS--HPRIVALAGGSGGGRCVPCRRAVRVEG--VALVHVDVGGTED---TLRSVVRALGVS 445 (664)
T ss_pred ccchhhHHHHHHHHHhhccCC--CCcEEEEecCCCCCchHHHHHHHHHcC--CCeEEEEecCCcc---hHHHHHHHhCCC
Confidence 343333344455555554443 389999999999999999998877622 2467888887654 466788888765
Q ss_pred CC---cchHHHHHHHHHHHH--HccCeEEEEEcCcccccccccc---ccCCCCCCCCeEEEEecCChhHHhhc---cCCC
Q 001457 239 LE---GDVEVLRAAFLSERL--KRQKRVLIILDDLWGKLDLAVV---GIPYGEEHKGCKIILTSRFKEVCDEM---ESTN 307 (1074)
Q Consensus 239 ~~---~~~~~~~~~~l~~~l--~~~k~~LlVlDdv~~~~~~~~~---~~~~~~~~~gs~iivTTR~~~v~~~~---~~~~ 307 (1074)
.- ++.-+-..+.....- ..++.-+||+-= .+...+..+ ...+.....-|.|++----+.+.... ..-.
T Consensus 446 nve~CGDlLdFI~ea~~~A~~~~~g~~P~lVlkL-REGssL~RVYnE~vaLacDrRlCHvv~EVplESLT~~n~~LPRLD 524 (664)
T PTZ00494 446 NVEVCGDLLGFVEEAMRGATVKASDGVPFLVMRL-REGSDLGRVYGEVVSLVSDCQACHIVLAVPMKALTPLNVSSRRLD 524 (664)
T ss_pred ChhhhccHHHHHHHHHHHHHHhcCCCCCEEEEEe-ccCCcHHHHHHHHHHHHccchhheeeeechHhhhchhhccCccce
Confidence 32 222111111111111 146667777731 111111100 01222333456666654444332111 1124
Q ss_pred eEeCCCCCHHHHHHHHHHhc
Q 001457 308 YVQVEELTDEDRLILFKKKA 327 (1074)
Q Consensus 308 ~~~l~~L~~~~~~~lf~~~a 327 (1074)
.|.++.++..+|.+.-....
T Consensus 525 Fy~VPnFSr~QAf~YtqH~l 544 (664)
T PTZ00494 525 FYCIPPFSRRQAFAYAEHTL 544 (664)
T ss_pred eEecCCcCHHHHHHHHhccc
Confidence 78899999999988765544
No 376
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=93.79 E-value=0.058 Score=53.97 Aligned_cols=22 Identities=41% Similarity=0.767 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 001457 185 IIGVYGSGGIGKTTLMKQVMKQ 206 (1074)
Q Consensus 185 vi~I~G~gG~GKTtLa~~v~~~ 206 (1074)
+|+|.|.+|+||||+|+.+...
T Consensus 1 ii~i~G~sgsGKttla~~l~~~ 22 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQ 22 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999887
No 377
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=93.75 E-value=0.12 Score=52.17 Aligned_cols=39 Identities=28% Similarity=0.584 Sum_probs=27.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh--cCC-CCeEEEEEecCCcCH
Q 001457 185 IIGVYGSGGIGKTTLMKQVMKQ--EIP-FDKVIFVRVTQTPDV 224 (1074)
Q Consensus 185 vi~I~G~gG~GKTtLa~~v~~~--~~~-F~~~~wv~vs~~~~~ 224 (1074)
.|+|+|-||+||||+|...... .++ |+ +.=|+...+++.
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~~~~-VLvVDaDpd~nL 43 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKGGYN-VLVVDADPDSNL 43 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhcCCce-EEEEeCCCCCCh
Confidence 6899999999999999986665 333 43 334555555543
No 378
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=93.71 E-value=0.037 Score=50.50 Aligned_cols=26 Identities=35% Similarity=0.597 Sum_probs=18.7
Q ss_pred EEEEcCCCCcHHHHHHHHHhh-cCCCC
Q 001457 186 IGVYGSGGIGKTTLMKQVMKQ-EIPFD 211 (1074)
Q Consensus 186 i~I~G~gG~GKTtLa~~v~~~-~~~F~ 211 (1074)
|-|+|.+|+||||+|+.+... ...|.
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~~f~ 28 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGLSFK 28 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT--EE
T ss_pred EeeECCCccHHHHHHHHHHHHcCCcee
Confidence 679999999999999999998 76664
No 379
>PRK06851 hypothetical protein; Provisional
Probab=93.70 E-value=1.1 Score=49.65 Aligned_cols=39 Identities=28% Similarity=0.348 Sum_probs=32.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhh--cCCCCeEEEEEecCC
Q 001457 183 INIIGVYGSGGIGKTTLMKQVMKQ--EIPFDKVIFVRVTQT 221 (1074)
Q Consensus 183 ~~vi~I~G~gG~GKTtLa~~v~~~--~~~F~~~~wv~vs~~ 221 (1074)
-+++.|.|.+|+||||++++++.. .+.++..++-|-+.+
T Consensus 214 ~~~~~i~G~pG~GKstl~~~i~~~a~~~G~~v~~~hC~~dP 254 (367)
T PRK06851 214 KNRYFLKGRPGTGKSTMLKKIAKAAEERGFDVEVYHCGFDP 254 (367)
T ss_pred ceEEEEeCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence 578999999999999999999998 667777776665444
No 380
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=93.68 E-value=0.078 Score=53.40 Aligned_cols=37 Identities=27% Similarity=0.401 Sum_probs=30.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhh-cCCCCeEEEEEec
Q 001457 183 INIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVT 219 (1074)
Q Consensus 183 ~~vi~I~G~gG~GKTtLa~~v~~~-~~~F~~~~wv~vs 219 (1074)
.++|.|+|+.|+|||||++.+... ...|...++.+-.
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~TTR 39 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVSHTTR 39 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEEEESS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcccccccceeeccc
Confidence 478999999999999999999998 7788666665543
No 381
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.66 E-value=0.22 Score=57.10 Aligned_cols=37 Identities=22% Similarity=0.415 Sum_probs=27.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhh-c--CCCCeEEEEEec
Q 001457 183 INIIGVYGSGGIGKTTLMKQVMKQ-E--IPFDKVIFVRVT 219 (1074)
Q Consensus 183 ~~vi~I~G~gG~GKTtLa~~v~~~-~--~~F~~~~wv~vs 219 (1074)
-+++.++|++|+||||++..+... . ..-..+..|+..
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D 260 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLD 260 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECC
Confidence 359999999999999988887665 3 233456667653
No 382
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=93.66 E-value=0.12 Score=54.23 Aligned_cols=84 Identities=20% Similarity=0.241 Sum_probs=49.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhh--cCCCCeEEEEEecCCcCHHHHHHHHHHHhccCC--------------C------
Q 001457 183 INIIGVYGSGGIGKTTLMKQVMKQ--EIPFDKVIFVRVTQTPDVKRVQDEIARFLNTEL--------------E------ 240 (1074)
Q Consensus 183 ~~vi~I~G~gG~GKTtLa~~v~~~--~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~--------------~------ 240 (1074)
-.++.|.|.+|+|||++|.++... ++.=..++||+...+. .++.+.+. .++-+. .
T Consensus 19 gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~--~~l~~~~~-s~g~d~~~~~~~g~l~~~d~~~~~~~~ 95 (226)
T PF06745_consen 19 GSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPP--EELIENMK-SFGWDLEEYEDSGKLKIIDAFPERIGW 95 (226)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-H--HHHHHHHH-TTTS-HHHHHHTTSEEEEESSGGGST-
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCH--HHHHHHHH-HcCCcHHHHhhcCCEEEEecccccccc
Confidence 469999999999999999986655 3313567888876543 44444432 222110 0
Q ss_pred -cchHHHHHHHHHHHHHccCeEEEEEcCcc
Q 001457 241 -GDVEVLRAAFLSERLKRQKRVLIILDDLW 269 (1074)
Q Consensus 241 -~~~~~~~~~~l~~~l~~~k~~LlVlDdv~ 269 (1074)
..........+.+.++..+...+|+|.+.
T Consensus 96 ~~~~~~~l~~~i~~~i~~~~~~~vVIDsls 125 (226)
T PF06745_consen 96 SPNDLEELLSKIREAIEELKPDRVVIDSLS 125 (226)
T ss_dssp TSCCHHHHHHHHHHHHHHHTSSEEEEETHH
T ss_pred cccCHHHHHHHHHHHHHhcCCCEEEEECHH
Confidence 11223444555555554455788888764
No 383
>PRK06217 hypothetical protein; Validated
Probab=93.64 E-value=0.057 Score=54.41 Aligned_cols=22 Identities=32% Similarity=0.451 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 001457 185 IIGVYGSGGIGKTTLMKQVMKQ 206 (1074)
Q Consensus 185 vi~I~G~gG~GKTtLa~~v~~~ 206 (1074)
.|.|.|.+|+||||+|+++...
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999988
No 384
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=93.62 E-value=0.66 Score=55.04 Aligned_cols=60 Identities=10% Similarity=0.166 Sum_probs=38.3
Q ss_pred CcchHHHHHHHHHHHhcCCCceeEEEEEcCCCCcHHHHHHHHHhh-cCCCCeEEEEEecCC
Q 001457 162 LKSALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQT 221 (1074)
Q Consensus 162 ~~~r~~~~~~l~~~l~~~~~~~~vi~I~G~gG~GKTtLa~~v~~~-~~~F~~~~wv~vs~~ 221 (1074)
+.|....+.++.+.+..-...-.-|.|+|..|+|||++|+.++.. ...-...+.|+++.-
T Consensus 189 iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~ 249 (509)
T PRK05022 189 MIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAAL 249 (509)
T ss_pred eeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccC
Confidence 344555555555555432222457889999999999999999988 322234455665543
No 385
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=93.55 E-value=0.46 Score=50.16 Aligned_cols=88 Identities=25% Similarity=0.293 Sum_probs=56.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh-c----CCCCeEEEEEecCCc-CHHHHHHHHHHHhccC-------CCcchHH-----
Q 001457 184 NIIGVYGSGGIGKTTLMKQVMKQ-E----IPFDKVIFVRVTQTP-DVKRVQDEIARFLNTE-------LEGDVEV----- 245 (1074)
Q Consensus 184 ~vi~I~G~gG~GKTtLa~~v~~~-~----~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~-------~~~~~~~----- 245 (1074)
.-++|.|-.|+|||+|+.++.++ . .+-+.++++-+.+.. .+.++..++...-..+ ...++..
T Consensus 70 QR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~~a 149 (276)
T cd01135 70 QKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERIIT 149 (276)
T ss_pred CEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHHHH
Confidence 36799999999999999998877 2 235788999888764 4556665554431110 0111111
Q ss_pred -HHHHHHHHHHH-c-cCeEEEEEcCcccc
Q 001457 246 -LRAAFLSERLK-R-QKRVLIILDDLWGK 271 (1074)
Q Consensus 246 -~~~~~l~~~l~-~-~k~~LlVlDdv~~~ 271 (1074)
...-.+-+++. + ++++|+++||+-..
T Consensus 150 ~~~a~aiAEyfrd~~g~~VLl~~D~ltr~ 178 (276)
T cd01135 150 PRMALTTAEYLAYEKGKHVLVILTDMTNY 178 (276)
T ss_pred HHHHHHHHHHHHhccCCeEEEEEcChhHH
Confidence 11233455554 2 79999999998654
No 386
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=93.55 E-value=0.051 Score=49.06 Aligned_cols=21 Identities=52% Similarity=0.858 Sum_probs=19.1
Q ss_pred EEEEcCCCCcHHHHHHHHHhh
Q 001457 186 IGVYGSGGIGKTTLMKQVMKQ 206 (1074)
Q Consensus 186 i~I~G~gG~GKTtLa~~v~~~ 206 (1074)
|-|+|.+|+|||++|+.+..+
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~ 21 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKD 21 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999998877
No 387
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=93.55 E-value=0.038 Score=33.43 Aligned_cols=21 Identities=33% Similarity=0.570 Sum_probs=14.1
Q ss_pred CccEEEecCCccCCCCCCccC
Q 001457 556 EIKNLDLSSTNISSLAPSLPC 576 (1074)
Q Consensus 556 ~L~~L~l~~~~~~~lp~~i~~ 576 (1074)
+|++||+++|.++.+|+++++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 367777777777777766544
No 388
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=93.51 E-value=0.39 Score=56.48 Aligned_cols=84 Identities=17% Similarity=0.175 Sum_probs=51.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhh-cCCCCeEEEEEecCCcCHHHHHHHHHHHhccCCCc----------------chHH
Q 001457 183 INIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKRVQDEIARFLNTELEG----------------DVEV 245 (1074)
Q Consensus 183 ~~vi~I~G~gG~GKTtLa~~v~~~-~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~----------------~~~~ 245 (1074)
-.++.|.|.+|+|||||+.++... .++-..++|++..++ ..++.+.+ +.++.+... ....
T Consensus 263 gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs--~~~i~~~~-~~lg~~~~~~~~~g~l~~~~~~p~~~~~~ 339 (484)
T TIGR02655 263 DSIILATGATGTGKTLLVSKFLENACANKERAILFAYEES--RAQLLRNA-YSWGIDFEEMEQQGLLKIICAYPESAGLE 339 (484)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCC--HHHHHHHH-HHcCCChHHHhhCCcEEEEEcccccCChH
Confidence 569999999999999999998887 333456777765554 45555553 444432110 1113
Q ss_pred HHHHHHHHHHHccCeEEEEEcCcc
Q 001457 246 LRAAFLSERLKRQKRVLIILDDLW 269 (1074)
Q Consensus 246 ~~~~~l~~~l~~~k~~LlVlDdv~ 269 (1074)
..+..+.+.+...+.-.+|+|.+.
T Consensus 340 ~~~~~i~~~i~~~~~~~vvIDsi~ 363 (484)
T TIGR02655 340 DHLQIIKSEIADFKPARIAIDSLS 363 (484)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCHH
Confidence 344555555544455566777663
No 389
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=93.51 E-value=0.06 Score=54.03 Aligned_cols=23 Identities=35% Similarity=0.523 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 001457 184 NIIGVYGSGGIGKTTLMKQVMKQ 206 (1074)
Q Consensus 184 ~vi~I~G~gG~GKTtLa~~v~~~ 206 (1074)
.+++|+|++|+||||+++.+...
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999876
No 390
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.50 E-value=0.43 Score=54.95 Aligned_cols=55 Identities=16% Similarity=0.234 Sum_probs=33.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhh-cCC--CCeEEEEEecCCcC--HHHHHHHHHHHhccC
Q 001457 183 INIIGVYGSGGIGKTTLMKQVMKQ-EIP--FDKVIFVRVTQTPD--VKRVQDEIARFLNTE 238 (1074)
Q Consensus 183 ~~vi~I~G~gG~GKTtLa~~v~~~-~~~--F~~~~wv~vs~~~~--~~~~~~~i~~~l~~~ 238 (1074)
-+|++++|+.|+||||.+.++... ... -..+..|+.. .+. ..+-++..++..+..
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~D-t~RigA~EQLr~~AeilGVp 315 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTD-SYRIGGHEQLRIYGKILGVP 315 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCC-ccchhHHHHHHHHHHHhCCC
Confidence 369999999999999999998876 222 2234555433 332 233344445555443
No 391
>PRK11823 DNA repair protein RadA; Provisional
Probab=93.48 E-value=0.19 Score=58.10 Aligned_cols=84 Identities=20% Similarity=0.276 Sum_probs=48.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhh-cCCCCeEEEEEecCCcCHHHHHHHHHHHhccCCCcc--hHHHHHHHHHHHHHccC
Q 001457 183 INIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKRVQDEIARFLNTELEGD--VEVLRAAFLSERLKRQK 259 (1074)
Q Consensus 183 ~~vi~I~G~gG~GKTtLa~~v~~~-~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~--~~~~~~~~l~~~l~~~k 259 (1074)
-.++.|.|.+|+|||||+.++... ...-..++|++..+. ...+.. -++.++.+.+.. ........+.+.++..+
T Consensus 80 Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees--~~qi~~-ra~rlg~~~~~l~~~~e~~l~~i~~~i~~~~ 156 (446)
T PRK11823 80 GSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEES--ASQIKL-RAERLGLPSDNLYLLAETNLEAILATIEEEK 156 (446)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcccc--HHHHHH-HHHHcCCChhcEEEeCCCCHHHHHHHHHhhC
Confidence 469999999999999999999887 322346788876543 333322 244454321110 00011223333443345
Q ss_pred eEEEEEcCcc
Q 001457 260 RVLIILDDLW 269 (1074)
Q Consensus 260 ~~LlVlDdv~ 269 (1074)
.-+||+|.+.
T Consensus 157 ~~lVVIDSIq 166 (446)
T PRK11823 157 PDLVVIDSIQ 166 (446)
T ss_pred CCEEEEechh
Confidence 5678888764
No 392
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=93.45 E-value=0.04 Score=56.50 Aligned_cols=22 Identities=18% Similarity=0.291 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 001457 184 NIIGVYGSGGIGKTTLMKQVMK 205 (1074)
Q Consensus 184 ~vi~I~G~gG~GKTtLa~~v~~ 205 (1074)
.+++|+|..|.||||+.+.+..
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHH
Confidence 6999999999999999999984
No 393
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=93.44 E-value=0.066 Score=65.97 Aligned_cols=186 Identities=17% Similarity=0.135 Sum_probs=86.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhhcCCCCeEEEEEecCCcCHHHHHHHHHHHhccCC----CcchHHHHHHHHHHHHH-c
Q 001457 183 INIIGVYGSGGIGKTTLMKQVMKQEIPFDKVIFVRVTQTPDVKRVQDEIARFLNTEL----EGDVEVLRAAFLSERLK-R 257 (1074)
Q Consensus 183 ~~vi~I~G~gG~GKTtLa~~v~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~----~~~~~~~~~~~l~~~l~-~ 257 (1074)
.++++|+|+.|.||||+.+.+....-....-.+|.+..... ..++.++...++... ...+-......+...+. .
T Consensus 322 ~~~liItGpNg~GKSTlLK~i~~~~l~aq~G~~Vpa~~~~~-~~~~d~i~~~i~~~~si~~~LStfS~~m~~~~~il~~~ 400 (771)
T TIGR01069 322 KRVLAITGPNTGGKTVTLKTLGLLALMFQSGIPIPANEHSE-IPYFEEIFADIGDEQSIEQNLSTFSGHMKNISAILSKT 400 (771)
T ss_pred ceEEEEECCCCCCchHHHHHHHHHHHHHHhCCCccCCcccc-ccchhheeeecChHhHHhhhhhHHHHHHHHHHHHHHhc
Confidence 47999999999999999999865500000000111111000 000111111111000 00000111112222221 1
Q ss_pred cCeEEEEEcCcccccc---cccc----ccCCCCCCCCeEEEEecCChhHHhhccCC-Ce--EeCCCCCHHHHHHHHHHhc
Q 001457 258 QKRVLIILDDLWGKLD---LAVV----GIPYGEEHKGCKIILTSRFKEVCDEMEST-NY--VQVEELTDEDRLILFKKKA 327 (1074)
Q Consensus 258 ~k~~LlVlDdv~~~~~---~~~~----~~~~~~~~~gs~iivTTR~~~v~~~~~~~-~~--~~l~~L~~~~~~~lf~~~a 327 (1074)
..+-|+++|..-...+ -..+ ...+. ..|+.+|+||...++....... .+ ..+. ++. +... |.-+.
T Consensus 401 ~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~--~~g~~viitTH~~eL~~~~~~~~~v~~~~~~-~d~-~~l~-p~Ykl 475 (771)
T TIGR01069 401 TENSLVLFDELGAGTDPDEGSALAISILEYLL--KQNAQVLITTHYKELKALMYNNEGVENASVL-FDE-ETLS-PTYKL 475 (771)
T ss_pred CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--hcCCEEEEECChHHHHHHhcCCCCeEEeEEE-EcC-CCCc-eEEEE
Confidence 4789999999875422 1112 11221 2478999999998874332211 11 1111 111 1000 10011
Q ss_pred CCCCCCchhHHHHHHHHHHhCCChHHHHHHHHHHcCCChhHHHHHHHHHhh
Q 001457 328 GLPEGTKAFDRAAEEVVRQCGKLPNAIVIIGTALRHKPVREWNEAIKRKKA 378 (1074)
Q Consensus 328 ~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~l~~~~~~~w~~~~~~l~~ 378 (1074)
-... + -...|-.|++++ |+|-.+.--|..+-.....+.+.++..+..
T Consensus 476 ~~G~--~-g~S~a~~iA~~~-Glp~~ii~~A~~~~~~~~~~~~~li~~L~~ 522 (771)
T TIGR01069 476 LKGI--P-GESYAFEIAQRY-GIPHFIIEQAKTFYGEFKEEINVLIEKLSA 522 (771)
T ss_pred CCCC--C-CCcHHHHHHHHh-CcCHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 0111 1 134578888877 888888888877765545566666666543
No 394
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=93.44 E-value=0.063 Score=53.63 Aligned_cols=23 Identities=22% Similarity=0.407 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 001457 184 NIIGVYGSGGIGKTTLMKQVMKQ 206 (1074)
Q Consensus 184 ~vi~I~G~gG~GKTtLa~~v~~~ 206 (1074)
++|.+.|++|+||||+|+.+...
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~ 25 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSV 25 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 58999999999999999999877
No 395
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=93.42 E-value=0.16 Score=60.81 Aligned_cols=78 Identities=12% Similarity=0.105 Sum_probs=56.4
Q ss_pred CCCcccCcchHHHHHHHHHHHhcCCCceeEEEEEcCCCCcHHHHHHHHHhh--cCCCCeEEEEEecCCcCHHHHHHHHHH
Q 001457 156 TPEFVPLKSALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ--EIPFDKVIFVRVTQTPDVKRVQDEIAR 233 (1074)
Q Consensus 156 ~~~~~~~~~r~~~~~~l~~~l~~~~~~~~vi~I~G~gG~GKTtLa~~v~~~--~~~F~~~~wv~vs~~~~~~~~~~~i~~ 233 (1074)
+..+..+.|.++.++.+...+... +.+.++|.+|+||||+|+.+.+. ..+|+..+|..- ...+...+++.++.
T Consensus 27 ~~~~~~vigq~~a~~~L~~~~~~~----~~~l~~G~~G~GKttla~~l~~~l~~~~~~~~~~~~n-p~~~~~~~~~~v~~ 101 (637)
T PRK13765 27 ERLIDQVIGQEHAVEVIKKAAKQR----RHVMMIGSPGTGKSMLAKAMAELLPKEELQDILVYPN-PEDPNNPKIRTVPA 101 (637)
T ss_pred cccHHHcCChHHHHHHHHHHHHhC----CeEEEECCCCCcHHHHHHHHHHHcChHhHHHheEeeC-CCcchHHHHHHHHH
Confidence 334445667777777766666554 36889999999999999999988 556677888654 44467777778777
Q ss_pred HhccC
Q 001457 234 FLNTE 238 (1074)
Q Consensus 234 ~l~~~ 238 (1074)
++|..
T Consensus 102 ~~G~~ 106 (637)
T PRK13765 102 GKGKQ 106 (637)
T ss_pred hcCHH
Confidence 66643
No 396
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.40 E-value=0.35 Score=54.77 Aligned_cols=55 Identities=18% Similarity=0.243 Sum_probs=33.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhh---cCCCCeEEEEEecCCcC--HHHHHHHHHHHhccC
Q 001457 183 INIIGVYGSGGIGKTTLMKQVMKQ---EIPFDKVIFVRVTQTPD--VKRVQDEIARFLNTE 238 (1074)
Q Consensus 183 ~~vi~I~G~gG~GKTtLa~~v~~~---~~~F~~~~wv~vs~~~~--~~~~~~~i~~~l~~~ 238 (1074)
-.+|+++|..|+||||++..+... ....+.+..+.. +.+. ..+-+...++.++..
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~-d~~rigalEQL~~~a~ilGvp 250 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTT-DSYRIGGHEQLRIYGKLLGVS 250 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEec-CCcchhHHHHHHHHHHHcCCc
Confidence 469999999999999999887765 222234444443 2232 223344445555544
No 397
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=93.39 E-value=0.35 Score=51.12 Aligned_cols=22 Identities=23% Similarity=0.468 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 001457 185 IIGVYGSGGIGKTTLMKQVMKQ 206 (1074)
Q Consensus 185 vi~I~G~gG~GKTtLa~~v~~~ 206 (1074)
+..|+|++|+||||||..+.-.
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~ 24 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALA 24 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHH
Confidence 5678999999999999998765
No 398
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=93.35 E-value=0.29 Score=55.55 Aligned_cols=88 Identities=17% Similarity=0.321 Sum_probs=56.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh--cCCCCeEEEEEecCCc-CHHHHHHHHHHHhccC-------CCcchH------HHH
Q 001457 184 NIIGVYGSGGIGKTTLMKQVMKQ--EIPFDKVIFVRVTQTP-DVKRVQDEIARFLNTE-------LEGDVE------VLR 247 (1074)
Q Consensus 184 ~vi~I~G~gG~GKTtLa~~v~~~--~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~-------~~~~~~------~~~ 247 (1074)
.-++|.|.+|+|||+|+.++... +.+-+.++|+-+.+.. .+.++.+++...-... ....+. ...
T Consensus 139 Qr~~Ifg~~G~GKt~l~~~~~~~~~~~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~~~~~ 218 (449)
T TIGR03305 139 GKAGLFGGAGVGKTVLLTEMIHNMVGQHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFRVGHT 218 (449)
T ss_pred CEEEeecCCCCChhHHHHHHHHHHHhcCCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHHHHHH
Confidence 46899999999999999998776 3445788898887654 3455555554421110 111111 112
Q ss_pred HHHHHHHHH--ccCeEEEEEcCcccc
Q 001457 248 AAFLSERLK--RQKRVLIILDDLWGK 271 (1074)
Q Consensus 248 ~~~l~~~l~--~~k~~LlVlDdv~~~ 271 (1074)
+-.+-+++. .++++|+++||+-..
T Consensus 219 a~tiAEyfrd~~G~~VLl~~DslTR~ 244 (449)
T TIGR03305 219 ALTMAEYFRDDEKQDVLLLIDNIFRF 244 (449)
T ss_pred HHHHHHHHHHhcCCceEEEecChHHH
Confidence 234556664 379999999998653
No 399
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=93.35 E-value=0.065 Score=50.88 Aligned_cols=22 Identities=36% Similarity=0.807 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 001457 185 IIGVYGSGGIGKTTLMKQVMKQ 206 (1074)
Q Consensus 185 vi~I~G~gG~GKTtLa~~v~~~ 206 (1074)
.|+|+|+.|+|||||++.+...
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhc
Confidence 3789999999999999999976
No 400
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=93.35 E-value=0.52 Score=50.95 Aligned_cols=49 Identities=18% Similarity=0.223 Sum_probs=35.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh--cCCCCeEEEEEecCCcCHHHHHHHHHHH
Q 001457 184 NIIGVYGSGGIGKTTLMKQVMKQ--EIPFDKVIFVRVTQTPDVKRVQDEIARF 234 (1074)
Q Consensus 184 ~vi~I~G~gG~GKTtLa~~v~~~--~~~F~~~~wv~vs~~~~~~~~~~~i~~~ 234 (1074)
.++.|.|.+|+||||++.++... ..+=..++|++.... ..++...+...
T Consensus 31 ~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E~~--~~~~~~r~~~~ 81 (271)
T cd01122 31 ELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEEP--VVRTARRLLGQ 81 (271)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEcccC--HHHHHHHHHHH
Confidence 48889999999999999998777 332356788877653 45555555443
No 401
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=93.34 E-value=0.65 Score=50.96 Aligned_cols=24 Identities=33% Similarity=0.482 Sum_probs=22.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhh
Q 001457 183 INIIGVYGSGGIGKTTLMKQVMKQ 206 (1074)
Q Consensus 183 ~~vi~I~G~gG~GKTtLa~~v~~~ 206 (1074)
..+|+++|++|+||||++..+...
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~~ 137 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAHK 137 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHH
Confidence 679999999999999999998887
No 402
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=93.33 E-value=0.12 Score=50.97 Aligned_cols=41 Identities=20% Similarity=0.222 Sum_probs=32.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhh-c-CCCCeEEEEEecCCcC
Q 001457 183 INIIGVYGSGGIGKTTLMKQVMKQ-E-IPFDKVIFVRVTQTPD 223 (1074)
Q Consensus 183 ~~vi~I~G~gG~GKTtLa~~v~~~-~-~~F~~~~wv~vs~~~~ 223 (1074)
..++.+.|+.|+|||.+|+.+... . +.....+-++.+.-..
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~ 45 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSE 45 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCS
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccc
Confidence 568899999999999999999988 6 5666777777665433
No 403
>PRK10867 signal recognition particle protein; Provisional
Probab=93.33 E-value=0.32 Score=55.42 Aligned_cols=24 Identities=33% Similarity=0.378 Sum_probs=21.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhh
Q 001457 183 INIIGVYGSGGIGKTTLMKQVMKQ 206 (1074)
Q Consensus 183 ~~vi~I~G~gG~GKTtLa~~v~~~ 206 (1074)
..+|.++|.+|+||||.|..+...
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~ 123 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKY 123 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHH
Confidence 679999999999999988877765
No 404
>PLN02318 phosphoribulokinase/uridine kinase
Probab=93.32 E-value=0.13 Score=59.59 Aligned_cols=33 Identities=33% Similarity=0.578 Sum_probs=26.3
Q ss_pred HHHhcCCCceeEEEEEcCCCCcHHHHHHHHHhh
Q 001457 174 KLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ 206 (1074)
Q Consensus 174 ~~l~~~~~~~~vi~I~G~gG~GKTtLa~~v~~~ 206 (1074)
+.+..+.....+|+|.|.+|+||||||+.+...
T Consensus 56 qlL~~~~~~riIIGIaGpSGSGKTTLAk~Lagl 88 (656)
T PLN02318 56 QLLAQKNDGIILVGVAGPSGAGKTVFTEKVLNF 88 (656)
T ss_pred HHHHhcCCCeEEEEEECCCCCcHHHHHHHHHhh
Confidence 333334445889999999999999999999865
No 405
>PRK00131 aroK shikimate kinase; Reviewed
Probab=93.32 E-value=0.069 Score=53.33 Aligned_cols=24 Identities=29% Similarity=0.275 Sum_probs=22.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhh
Q 001457 183 INIIGVYGSGGIGKTTLMKQVMKQ 206 (1074)
Q Consensus 183 ~~vi~I~G~gG~GKTtLa~~v~~~ 206 (1074)
...|.|+|++|+||||+|+.+...
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~ 27 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKR 27 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHH
Confidence 458999999999999999999987
No 406
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=93.31 E-value=0.075 Score=52.10 Aligned_cols=24 Identities=33% Similarity=0.605 Sum_probs=22.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhh
Q 001457 183 INIIGVYGSGGIGKTTLMKQVMKQ 206 (1074)
Q Consensus 183 ~~vi~I~G~gG~GKTtLa~~v~~~ 206 (1074)
..+++|+|..|+|||||++.+...
T Consensus 6 ~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 6 IPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred ceEEEEECCCCChHHHHHHHHHHH
Confidence 679999999999999999999977
No 407
>PRK08149 ATP synthase SpaL; Validated
Probab=93.30 E-value=0.4 Score=54.26 Aligned_cols=87 Identities=21% Similarity=0.347 Sum_probs=51.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhcCCCCeEEEEEecC-CcCHHHHHHHHHHHhccC-------CCcchH------HHHHH
Q 001457 184 NIIGVYGSGGIGKTTLMKQVMKQEIPFDKVIFVRVTQ-TPDVKRVQDEIARFLNTE-------LEGDVE------VLRAA 249 (1074)
Q Consensus 184 ~vi~I~G~gG~GKTtLa~~v~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~-------~~~~~~------~~~~~ 249 (1074)
..++|+|..|+|||||++.+.+.... +.++...+.. ..++.++..+........ ....+. ...+.
T Consensus 152 q~i~I~G~sG~GKTTLl~~i~~~~~~-dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a~~~a~ 230 (428)
T PRK08149 152 QRMGIFASAGCGKTSLMNMLIEHSEA-DVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNAALVAT 230 (428)
T ss_pred CEEEEECCCCCChhHHHHHHhcCCCC-CeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHhHHHHHH
Confidence 48899999999999999999876222 3344444443 334556655555432211 011111 11222
Q ss_pred HHHHHHH-ccCeEEEEEcCcccc
Q 001457 250 FLSERLK-RQKRVLIILDDLWGK 271 (1074)
Q Consensus 250 ~l~~~l~-~~k~~LlVlDdv~~~ 271 (1074)
.+-+++. .+|++|+++||+-..
T Consensus 231 tiAE~fr~~G~~Vll~~DslTr~ 253 (428)
T PRK08149 231 TVAEYFRDQGKRVVLFIDSMTRY 253 (428)
T ss_pred HHHHHHHHcCCCEEEEccchHHH
Confidence 3344442 589999999998653
No 408
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=93.29 E-value=0.17 Score=48.34 Aligned_cols=41 Identities=22% Similarity=0.302 Sum_probs=30.2
Q ss_pred EEEEcCCCCcHHHHHHHHHhh-cCCCCeEEEEEecCCcCHHHHHH
Q 001457 186 IGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKRVQD 229 (1074)
Q Consensus 186 i~I~G~gG~GKTtLa~~v~~~-~~~F~~~~wv~vs~~~~~~~~~~ 229 (1074)
|.++|.+|+|||+||+.++.. .. ...-+.++...+..++..
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~~---~~~~i~~~~~~~~~dl~g 43 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLGR---PVIRINCSSDTTEEDLIG 43 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHTC---EEEEEE-TTTSTHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHhhc---ceEEEEecccccccccee
Confidence 679999999999999999987 22 233467777777776654
No 409
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=93.26 E-value=0.061 Score=52.19 Aligned_cols=22 Identities=41% Similarity=0.570 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 001457 185 IIGVYGSGGIGKTTLMKQVMKQ 206 (1074)
Q Consensus 185 vi~I~G~gG~GKTtLa~~v~~~ 206 (1074)
+|.|+|++|+||||+|+.+...
T Consensus 1 li~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhh
Confidence 4789999999999999999876
No 410
>PRK14529 adenylate kinase; Provisional
Probab=93.25 E-value=0.27 Score=50.64 Aligned_cols=81 Identities=17% Similarity=0.150 Sum_probs=44.5
Q ss_pred EEEEcCCCCcHHHHHHHHHhh--cCCCCeEEE--EEecCCcCHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHccCeE
Q 001457 186 IGVYGSGGIGKTTLMKQVMKQ--EIPFDKVIF--VRVTQTPDVKRVQDEIARFLNTELEGDVEVLRAAFLSERLKRQKRV 261 (1074)
Q Consensus 186 i~I~G~gG~GKTtLa~~v~~~--~~~F~~~~w--v~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~ 261 (1074)
|.|.|++|+||||+|+.+... -.+.+.... -.+..........++++.+ ....+++.....+.+++......
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~~~~~is~gdllr~~i~~~t~lg~~i~~~i~~----G~lvpdei~~~lv~~~l~~~~~~ 78 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKYDLAHIESGAIFREHIGGGTELGKKAKEYIDR----GDLVPDDITIPMILETLKQDGKN 78 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCcccchhhhhhccCCChHHHHHHHHHhc----cCcchHHHHHHHHHHHHhccCCC
Confidence 788999999999999999887 223221111 1222222222333333322 22233444555666666532245
Q ss_pred EEEEcCccc
Q 001457 262 LIILDDLWG 270 (1074)
Q Consensus 262 LlVlDdv~~ 270 (1074)
-+|||+.-.
T Consensus 79 g~iLDGfPR 87 (223)
T PRK14529 79 GWLLDGFPR 87 (223)
T ss_pred cEEEeCCCC
Confidence 589998754
No 411
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=93.20 E-value=0.063 Score=51.79 Aligned_cols=22 Identities=41% Similarity=0.658 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 001457 185 IIGVYGSGGIGKTTLMKQVMKQ 206 (1074)
Q Consensus 185 vi~I~G~gG~GKTtLa~~v~~~ 206 (1074)
||.|+|.+|+||||+|+.+...
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~ 22 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKK 22 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999976
No 412
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=93.20 E-value=0.48 Score=53.72 Aligned_cols=88 Identities=14% Similarity=0.232 Sum_probs=52.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhhcCCCCeEEEEEecCCc-CHHHHHHHHHHHhccC-------CCcchHH------HHH
Q 001457 183 INIIGVYGSGGIGKTTLMKQVMKQEIPFDKVIFVRVTQTP-DVKRVQDEIARFLNTE-------LEGDVEV------LRA 248 (1074)
Q Consensus 183 ~~vi~I~G~gG~GKTtLa~~v~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~-------~~~~~~~------~~~ 248 (1074)
-..++|+|..|+|||||++++.+.... +.++++-+.+.. .+.++..+.+..-+.. ....+.. ..+
T Consensus 158 Gqri~I~G~sG~GKTtLL~~I~~~~~~-d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a~~~a 236 (442)
T PRK08927 158 GQRMGIFAGSGVGKSVLLSMLARNADA-DVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQAAYLT 236 (442)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccCC-CEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHHHHHH
Confidence 358899999999999999999877322 455566666544 3445544444332211 0111111 112
Q ss_pred HHHHHHHH-ccCeEEEEEcCcccc
Q 001457 249 AFLSERLK-RQKRVLIILDDLWGK 271 (1074)
Q Consensus 249 ~~l~~~l~-~~k~~LlVlDdv~~~ 271 (1074)
-.+-+++. .++.+|+++||+-..
T Consensus 237 ~tiAEyfrd~G~~Vll~~DslTr~ 260 (442)
T PRK08927 237 LAIAEYFRDQGKDVLCLMDSVTRF 260 (442)
T ss_pred HHHHHHHHHCCCcEEEEEeCcHHH
Confidence 23444442 589999999998643
No 413
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=93.16 E-value=0.32 Score=54.90 Aligned_cols=87 Identities=20% Similarity=0.339 Sum_probs=52.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhcCCCCeEEEEEecCCc-CHHHHHHHHHHHhccC-------CCcchHHH------HHH
Q 001457 184 NIIGVYGSGGIGKTTLMKQVMKQEIPFDKVIFVRVTQTP-DVKRVQDEIARFLNTE-------LEGDVEVL------RAA 249 (1074)
Q Consensus 184 ~vi~I~G~gG~GKTtLa~~v~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~------~~~ 249 (1074)
..++|+|..|+|||||++.+.+.... +.++.+-+.+.. .+.++..+++..-+.. ....+... .+-
T Consensus 163 qrigI~G~sG~GKSTLL~~I~~~~~~-dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a~~~A~ 241 (444)
T PRK08972 163 QRMGLFAGSGVGKSVLLGMMTRGTTA-DVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKGCETAT 241 (444)
T ss_pred CEEEEECCCCCChhHHHHHhccCCCC-CEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHHHHHHH
Confidence 57999999999999999999876222 566666666554 3445555544331111 11111111 122
Q ss_pred HHHHHHH-ccCeEEEEEcCcccc
Q 001457 250 FLSERLK-RQKRVLIILDDLWGK 271 (1074)
Q Consensus 250 ~l~~~l~-~~k~~LlVlDdv~~~ 271 (1074)
.+-+++. .++++|+++||+-..
T Consensus 242 tiAEyfrd~G~~VLl~~DslTR~ 264 (444)
T PRK08972 242 TIAEYFRDQGLNVLLLMDSLTRY 264 (444)
T ss_pred HHHHHHHHcCCCEEEEEcChHHH
Confidence 3444442 589999999998643
No 414
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=93.16 E-value=0.11 Score=50.54 Aligned_cols=31 Identities=23% Similarity=0.446 Sum_probs=24.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh--cCCCCeEEE
Q 001457 185 IIGVYGSGGIGKTTLMKQVMKQ--EIPFDKVIF 215 (1074)
Q Consensus 185 vi~I~G~gG~GKTtLa~~v~~~--~~~F~~~~w 215 (1074)
||+|+|+.|+||||++..+... ...+...+.
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~~G~~V~vi 33 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKARGYRVATI 33 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 5899999999999999999988 334544444
No 415
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=93.15 E-value=0.11 Score=55.83 Aligned_cols=49 Identities=16% Similarity=0.277 Sum_probs=38.4
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHhh-cCCCCeEEEEEecCCcCHHHHHHHHH
Q 001457 182 SINIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKRVQDEIA 232 (1074)
Q Consensus 182 ~~~vi~I~G~gG~GKTtLa~~v~~~-~~~F~~~~wv~vs~~~~~~~~~~~i~ 232 (1074)
.-+++.|+|.+|+|||++|.++... ......++||+..+. ...+.+...
T Consensus 22 ~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e~--~~~l~~~~~ 71 (260)
T COG0467 22 RGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEES--PEELLENAR 71 (260)
T ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecCC--HHHHHHHHH
Confidence 4679999999999999999998888 555888999988775 344444333
No 416
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=93.15 E-value=0.53 Score=51.43 Aligned_cols=86 Identities=17% Similarity=0.348 Sum_probs=49.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhcCCCCeEEEEEecC-CcCHHHHHHHHHHHhccC-------CCcchHH------HHHH
Q 001457 184 NIIGVYGSGGIGKTTLMKQVMKQEIPFDKVIFVRVTQ-TPDVKRVQDEIARFLNTE-------LEGDVEV------LRAA 249 (1074)
Q Consensus 184 ~vi~I~G~gG~GKTtLa~~v~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~-------~~~~~~~------~~~~ 249 (1074)
..++|+|..|+|||||++.+.+.... +..+..-+.. ..++.++.......-+.. ....+.. ..+-
T Consensus 70 qri~I~G~sG~GKTtLl~~Ia~~~~~-~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~~~~~a~ 148 (326)
T cd01136 70 QRLGIFAGSGVGKSTLLGMIARGTTA-DVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVKAAYTAT 148 (326)
T ss_pred cEEEEECCCCCChHHHHHHHhCCCCC-CEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHHHHHHHH
Confidence 47899999999999999998877222 3334444443 334555555554432210 1111111 1122
Q ss_pred HHHHHHH-ccCeEEEEEcCccc
Q 001457 250 FLSERLK-RQKRVLIILDDLWG 270 (1074)
Q Consensus 250 ~l~~~l~-~~k~~LlVlDdv~~ 270 (1074)
.+-+++. .+|.+|+++||+-.
T Consensus 149 ~~AEyfr~~g~~Vll~~Dsltr 170 (326)
T cd01136 149 AIAEYFRDQGKDVLLLMDSLTR 170 (326)
T ss_pred HHHHHHHHcCCCeEEEeccchH
Confidence 2334442 58999999999854
No 417
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=93.14 E-value=0.28 Score=56.71 Aligned_cols=85 Identities=20% Similarity=0.204 Sum_probs=46.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhh-cCCCCeEEEEEecCCcCHHHHHHHHHHHhccCCCcc--hHHHHHHHHHHHHHccC
Q 001457 183 INIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKRVQDEIARFLNTELEGD--VEVLRAAFLSERLKRQK 259 (1074)
Q Consensus 183 ~~vi~I~G~gG~GKTtLa~~v~~~-~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~--~~~~~~~~l~~~l~~~k 259 (1074)
-.++.|.|.+|+|||||+.++... ...-..++|++..+. ..++.. -++.++...+.. ......+.+.+.+...+
T Consensus 94 GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs--~~qi~~-ra~rlg~~~~~l~~~~e~~~~~I~~~i~~~~ 170 (454)
T TIGR00416 94 GSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEES--LQQIKM-RAIRLGLPEPNLYVLSETNWEQICANIEEEN 170 (454)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCC--HHHHHH-HHHHcCCChHHeEEcCCCCHHHHHHHHHhcC
Confidence 469999999999999999998776 222245778875543 333322 123333221100 00011233334443345
Q ss_pred eEEEEEcCccc
Q 001457 260 RVLIILDDLWG 270 (1074)
Q Consensus 260 ~~LlVlDdv~~ 270 (1074)
.-++|+|.+..
T Consensus 171 ~~~vVIDSIq~ 181 (454)
T TIGR00416 171 PQACVIDSIQT 181 (454)
T ss_pred CcEEEEecchh
Confidence 55677777643
No 418
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=93.14 E-value=0.12 Score=51.55 Aligned_cols=34 Identities=29% Similarity=0.428 Sum_probs=27.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhcCCCCeEEEEE
Q 001457 184 NIIGVYGSGGIGKTTLMKQVMKQEIPFDKVIFVR 217 (1074)
Q Consensus 184 ~vi~I~G~gG~GKTtLa~~v~~~~~~F~~~~wv~ 217 (1074)
.|++|+|++|+|||||.|.+..-...=++.+||.
T Consensus 29 evv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~ 62 (240)
T COG1126 29 EVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVD 62 (240)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCcCCCCceEEEC
Confidence 4999999999999999998876644445677774
No 419
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=93.12 E-value=0.3 Score=55.20 Aligned_cols=87 Identities=22% Similarity=0.270 Sum_probs=56.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhcCC-----CC---------eEEEEEecCCcCHHHHHHHHHHHhc-cC-------CCc
Q 001457 184 NIIGVYGSGGIGKTTLMKQVMKQEIP-----FD---------KVIFVRVTQTPDVKRVQDEIARFLN-TE-------LEG 241 (1074)
Q Consensus 184 ~vi~I~G~gG~GKTtLa~~v~~~~~~-----F~---------~~~wv~vs~~~~~~~~~~~i~~~l~-~~-------~~~ 241 (1074)
.-++|.|-+|+|||||+.++.+..+. .| .++++-+.+.....+.+.+.+..-+ .. ...
T Consensus 142 QRigIfagsGvGKs~L~~~i~~~~~~~~~~~aD~~~~~~~~~v~V~a~IGerre~~efi~~~l~~~g~l~rtvvv~atsd 221 (466)
T TIGR01040 142 QKIPIFSAAGLPHNEIAAQICRQAGLVKLPTKDVHDGHEDNFAIVFAAMGVNMETARFFKQDFEENGSMERVCLFLNLAN 221 (466)
T ss_pred CeeeeecCCCCCHHHHHHHHHHhhccccccccccccccCCceEEEEEEeeeehHHHHHHHHHHHhcCCcceEEEEEECCC
Confidence 46899999999999999998877221 33 6778888887666665655555544 11 011
Q ss_pred chHH------HHHHHHHHHHH--ccCeEEEEEcCccc
Q 001457 242 DVEV------LRAAFLSERLK--RQKRVLIILDDLWG 270 (1074)
Q Consensus 242 ~~~~------~~~~~l~~~l~--~~k~~LlVlDdv~~ 270 (1074)
.+.. ..+-.+-+++. +++++|+++||+-.
T Consensus 222 ~p~~~R~~a~~~a~tiAEyfr~~~G~~VLl~~DslTr 258 (466)
T TIGR01040 222 DPTIERIITPRLALTTAEYLAYQCEKHVLVILTDMSS 258 (466)
T ss_pred CCHHHHHHHHhhhHHHHHHHHHhcCCcEEEeccChHH
Confidence 1111 11233555665 48999999999854
No 420
>PRK13947 shikimate kinase; Provisional
Probab=93.12 E-value=0.074 Score=52.93 Aligned_cols=22 Identities=41% Similarity=0.394 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 001457 185 IIGVYGSGGIGKTTLMKQVMKQ 206 (1074)
Q Consensus 185 vi~I~G~gG~GKTtLa~~v~~~ 206 (1074)
-|.|+|++|+||||+|+.+.+.
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~ 24 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATT 24 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHH
Confidence 4889999999999999999987
No 421
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=93.07 E-value=0.85 Score=47.81 Aligned_cols=39 Identities=26% Similarity=0.277 Sum_probs=29.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhh-cCCCCeEEEEEecCC
Q 001457 183 INIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQT 221 (1074)
Q Consensus 183 ~~vi~I~G~gG~GKTtLa~~v~~~-~~~F~~~~wv~vs~~ 221 (1074)
-.++.|.|.+|+||||+|.++... -..-..++|++....
T Consensus 20 G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~e~~ 59 (229)
T TIGR03881 20 GFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTTEES 59 (229)
T ss_pred CeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEccCC
Confidence 469999999999999999987665 223456788876443
No 422
>PRK00889 adenylylsulfate kinase; Provisional
Probab=93.07 E-value=0.083 Score=52.81 Aligned_cols=24 Identities=25% Similarity=0.333 Sum_probs=22.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhh
Q 001457 183 INIIGVYGSGGIGKTTLMKQVMKQ 206 (1074)
Q Consensus 183 ~~vi~I~G~gG~GKTtLa~~v~~~ 206 (1074)
-.+|+|+|++|+||||+|+.+...
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~ 27 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEK 27 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 469999999999999999999987
No 423
>PRK05922 type III secretion system ATPase; Validated
Probab=93.05 E-value=0.46 Score=53.83 Aligned_cols=87 Identities=21% Similarity=0.303 Sum_probs=50.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhcCCCCeEEEEEecCC-cCHHHHHHHHHHHhccCC-------CcchH------HHHHH
Q 001457 184 NIIGVYGSGGIGKTTLMKQVMKQEIPFDKVIFVRVTQT-PDVKRVQDEIARFLNTEL-------EGDVE------VLRAA 249 (1074)
Q Consensus 184 ~vi~I~G~gG~GKTtLa~~v~~~~~~F~~~~wv~vs~~-~~~~~~~~~i~~~l~~~~-------~~~~~------~~~~~ 249 (1074)
..++|+|..|+|||||++.+.+.... +..+++-+.+. ..+.+.+.+......... ...+. ...+-
T Consensus 158 qrigI~G~nG~GKSTLL~~Ia~~~~~-d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~a~~~a~ 236 (434)
T PRK05922 158 QRIGVFSEPGSGKSSLLSTIAKGSKS-TINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVIAGRAAM 236 (434)
T ss_pred cEEEEECCCCCChHHHHHHHhccCCC-CceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHHHHHHHHH
Confidence 46899999999999999999877322 33444444432 233444444433322110 11111 11122
Q ss_pred HHHHHHH-ccCeEEEEEcCcccc
Q 001457 250 FLSERLK-RQKRVLIILDDLWGK 271 (1074)
Q Consensus 250 ~l~~~l~-~~k~~LlVlDdv~~~ 271 (1074)
.+-+++. .++++|+++||+-..
T Consensus 237 tiAEyfrd~G~~VLl~~DslTR~ 259 (434)
T PRK05922 237 TIAEYFRDQGHRVLFIMDSLSRW 259 (434)
T ss_pred HHHHHHHHcCCCEEEeccchhHH
Confidence 3445552 589999999998653
No 424
>PTZ00185 ATPase alpha subunit; Provisional
Probab=93.03 E-value=0.59 Score=53.32 Aligned_cols=87 Identities=18% Similarity=0.185 Sum_probs=52.4
Q ss_pred eEEEEEcCCCCcHHHHH-HHHHhhc--------CCCCeEEEEEecCCcCHHHHHHHHHHHhcc-C-------CCcchHHH
Q 001457 184 NIIGVYGSGGIGKTTLM-KQVMKQE--------IPFDKVIFVRVTQTPDVKRVQDEIARFLNT-E-------LEGDVEVL 246 (1074)
Q Consensus 184 ~vi~I~G~gG~GKTtLa-~~v~~~~--------~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~-~-------~~~~~~~~ 246 (1074)
.-++|.|-.|+|||+|| -.+.++. ++-+.++++-+.+......-+.+.+++-+. + ...++...
T Consensus 190 QR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAdep~~~ 269 (574)
T PTZ00185 190 QRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAEPAGL 269 (574)
T ss_pred CEEEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHHHHHHHHhcCCccceEEEEECCCCCHHH
Confidence 36789999999999997 5566652 345678899998876433334444443331 1 01111111
Q ss_pred ------HHHHHHHHHH-ccCeEEEEEcCccc
Q 001457 247 ------RAAFLSERLK-RQKRVLIILDDLWG 270 (1074)
Q Consensus 247 ------~~~~l~~~l~-~~k~~LlVlDdv~~ 270 (1074)
..-.+-+++. +++..|+|+||+..
T Consensus 270 r~~Apy~a~tiAEYFrd~GkdVLiv~DDLTr 300 (574)
T PTZ00185 270 QYLAPYSGVTMGEYFMNRGRHCLCVYDDLSK 300 (574)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEEcCchH
Confidence 1123334442 58999999999864
No 425
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=93.02 E-value=0.099 Score=53.96 Aligned_cols=63 Identities=21% Similarity=0.293 Sum_probs=36.8
Q ss_pred HHHHHHHHHhcCCCceeEEEEEcCCCCcHHHHHHHHHhh--cCCC-CeEEEEEecCCcCHHHHHHH
Q 001457 168 VIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ--EIPF-DKVIFVRVTQTPDVKRVQDE 230 (1074)
Q Consensus 168 ~~~~l~~~l~~~~~~~~vi~I~G~gG~GKTtLa~~v~~~--~~~F-~~~~wv~vs~~~~~~~~~~~ 230 (1074)
...++++.+.....+-.+|+|.|+||+||+||.-.+... .... -.++=|+=|..++--.++.+
T Consensus 14 ~~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGD 79 (266)
T PF03308_consen 14 EARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGD 79 (266)
T ss_dssp HHHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--
T ss_pred HHHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCccccc
Confidence 455677777665545789999999999999999888777 2222 23333444455555455444
No 426
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=93.02 E-value=0.51 Score=55.29 Aligned_cols=50 Identities=24% Similarity=0.301 Sum_probs=38.5
Q ss_pred CCcccCcchHHHHHHHHHHHhcCC-------CceeEEEEEcCCCCcHHHHHHHHHhh
Q 001457 157 PEFVPLKSALEVIKSVMKLLKDNS-------ISINIIGVYGSGGIGKTTLMKQVMKQ 206 (1074)
Q Consensus 157 ~~~~~~~~r~~~~~~l~~~l~~~~-------~~~~vi~I~G~gG~GKTtLa~~v~~~ 206 (1074)
.+.-|.+.-.+++.++++.|.+.. .-.+-|..+|++|.|||.||+++...
T Consensus 150 ~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgE 206 (596)
T COG0465 150 ADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGE 206 (596)
T ss_pred hhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcc
Confidence 334445555667778888887654 23678899999999999999999998
No 427
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=93.02 E-value=0.35 Score=54.81 Aligned_cols=86 Identities=19% Similarity=0.315 Sum_probs=48.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhcCCCCeEEEEEecC-CcCHHHHHHHHHHHhccC-------CCcchHH------HHHH
Q 001457 184 NIIGVYGSGGIGKTTLMKQVMKQEIPFDKVIFVRVTQ-TPDVKRVQDEIARFLNTE-------LEGDVEV------LRAA 249 (1074)
Q Consensus 184 ~vi~I~G~gG~GKTtLa~~v~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~-------~~~~~~~------~~~~ 249 (1074)
..++|+|..|+|||||++.+.........++ +.+.+ .-.+.++..+.+..-+.+ ....+.. ..+-
T Consensus 141 q~i~I~G~sG~GKTtLl~~I~~~~~~~~gvi-~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a~~~a~ 219 (418)
T TIGR03498 141 QRLGIFAGSGVGKSTLLSMLARNTDADVVVI-ALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQAAYTAT 219 (418)
T ss_pred cEEEEECCCCCChHHHHHHHhCCCCCCEEEE-EEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHHHHHHH
Confidence 5899999999999999998887722222232 33333 334555555444332111 0111111 1122
Q ss_pred HHHHHHH-ccCeEEEEEcCccc
Q 001457 250 FLSERLK-RQKRVLIILDDLWG 270 (1074)
Q Consensus 250 ~l~~~l~-~~k~~LlVlDdv~~ 270 (1074)
.+-+++. .++.+|+++||+-.
T Consensus 220 ~iAEyfrd~G~~Vll~~DslTr 241 (418)
T TIGR03498 220 AIAEYFRDQGKDVLLLMDSVTR 241 (418)
T ss_pred HHHHHHHHcCCCEEEeccchhH
Confidence 3444443 58999999999864
No 428
>PF12061 DUF3542: Protein of unknown function (DUF3542); InterPro: IPR021929 R1 is a gene for resistance to late blight, the most destructive disease in potato cultivation worldwide. The R1 gene belongs to the class of plant genes for pathogen resistance that have a leucine zipper motif, a putative nucleotide binding domain and a leucine-rich repeat domain []. Most proteins matching this entry are found associated with PF00931 from PFAM.
Probab=92.98 E-value=0.35 Score=50.40 Aligned_cols=88 Identities=15% Similarity=0.214 Sum_probs=62.2
Q ss_pred hcccchHHHHHHHHHHHHHHHHHHHHHHHHH-hhcCcchHHHHHHHHHHHHHHHHHHHHHHHHhhcccCccccccCCh--
Q 001457 37 VRYGSNIGAFRERARDLEAKKTDVLRFVKDA-EDRGEEIKAEVRNWQVQTIQYEMDVELLEEKIQKSEGRCHTWHLDW-- 113 (1074)
Q Consensus 37 ~~~~~~~~~l~~~l~~l~~~l~~i~~~l~~a-~~~~~~~~~~~~~Wl~~~~~~~~d~ed~~d~~~~~~~~~~~~~~~~-- 113 (1074)
.++.+-+.+++.+++.++..+..+|.|++.- +..+...++ .+.++.++...||++|+++|. |.....+.|
T Consensus 310 ~rysdSlaflKnQiqvIQ~elesLqpFLk~V~ee~~nkh~~-~ed~a~~ii~kAyevEYVVDa------Ci~k~~P~Wcl 382 (402)
T PF12061_consen 310 GRYSDSLAFLKNQIQVIQTELESLQPFLKHVVEEPHNKHDT-NEDCATQIIRKAYEVEYVVDA------CISKSVPHWCL 382 (402)
T ss_pred ccccchHHHHHHHHHHHHHHHHHhhHHHHHHHhccchhhhh-hhhHHHHHHHHHhheeeeeeh------hhcCCCcHHHH
Confidence 3445567889999999999999999999865 554433444 999999999999999999884 333223333
Q ss_pred -hhhhhhcHHHHHHHHHHH
Q 001457 114 -RKRHQLSRVATKKTVEII 131 (1074)
Q Consensus 114 -~~~~~~~~~i~~~~~~l~ 131 (1074)
.+-..+..+|+.++++++
T Consensus 383 ~~WL~dIieei~~ik~~i~ 401 (402)
T PF12061_consen 383 ERWLLDIIEEITCIKAKIQ 401 (402)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 233456667777776664
No 429
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=92.98 E-value=0.33 Score=54.22 Aligned_cols=74 Identities=23% Similarity=0.359 Sum_probs=43.9
Q ss_pred CcchHHHHHHHHHHHhcC------------CCceeEEEEEcCCCCcHHHHHHHHHhh-cCCC---CeEEEEEecC-CcCH
Q 001457 162 LKSALEVIKSVMKLLKDN------------SISINIIGVYGSGGIGKTTLMKQVMKQ-EIPF---DKVIFVRVTQ-TPDV 224 (1074)
Q Consensus 162 ~~~r~~~~~~l~~~l~~~------------~~~~~vi~I~G~gG~GKTtLa~~v~~~-~~~F---~~~~wv~vs~-~~~~ 224 (1074)
+.|.++.++.+.-.+... +...+-|.++|++|+|||++|+.+... ...| +...|+.... ..+.
T Consensus 14 IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~dv 93 (441)
T TIGR00390 14 IIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDV 93 (441)
T ss_pred ccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccCCH
Confidence 345666666655444321 112467899999999999999999988 4444 2222222221 2256
Q ss_pred HHHHHHHHHHh
Q 001457 225 KRVQDEIARFL 235 (1074)
Q Consensus 225 ~~~~~~i~~~l 235 (1074)
..+++.+....
T Consensus 94 E~i~r~l~e~A 104 (441)
T TIGR00390 94 ESMVRDLTDAA 104 (441)
T ss_pred HHHHHHHHHHH
Confidence 66666665543
No 430
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=92.98 E-value=0.074 Score=50.94 Aligned_cols=20 Identities=40% Similarity=0.702 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 001457 185 IIGVYGSGGIGKTTLMKQVM 204 (1074)
Q Consensus 185 vi~I~G~gG~GKTtLa~~v~ 204 (1074)
.|+|.|.+|+||||+++.+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999887
No 431
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=92.98 E-value=0.061 Score=55.58 Aligned_cols=116 Identities=16% Similarity=0.130 Sum_probs=58.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhh--cCCCCeEEEEEecCCcCHHHHHHHHHHHhccCCC---cc-hHHHHHHHHHHHHH
Q 001457 183 INIIGVYGSGGIGKTTLMKQVMKQ--EIPFDKVIFVRVTQTPDVKRVQDEIARFLNTELE---GD-VEVLRAAFLSERLK 256 (1074)
Q Consensus 183 ~~vi~I~G~gG~GKTtLa~~v~~~--~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~---~~-~~~~~~~~l~~~l~ 256 (1074)
-+++.|.|+.|.||||+.+.+..- ..+-.+.+|-.-.. -....+|...++.... +. .-......+...+.
T Consensus 31 g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~~~~----~~~~~~i~~~~~~~d~~~~~~StF~~e~~~~~~il~ 106 (222)
T cd03287 31 GYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPASSAT----LSIFDSVLTRMGASDSIQHGMSTFMVELSETSHILS 106 (222)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcCceE----EeccceEEEEecCccccccccchHHHHHHHHHHHHH
Confidence 468899999999999999998873 11112222221000 0001111111111100 01 11222223333332
Q ss_pred -ccCeEEEEEcCcccccc-------ccccccCCCCCCCCeEEEEecCChhHHhhc
Q 001457 257 -RQKRVLIILDDLWGKLD-------LAVVGIPYGEEHKGCKIILTSRFKEVCDEM 303 (1074)
Q Consensus 257 -~~k~~LlVlDdv~~~~~-------~~~~~~~~~~~~~gs~iivTTR~~~v~~~~ 303 (1074)
..++-|+++|+.-...+ ...+...+.. ..++.+|++|...+++...
T Consensus 107 ~~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~-~~~~~~i~~TH~~~l~~~~ 160 (222)
T cd03287 107 NCTSRSLVILDELGRGTSTHDGIAIAYATLHYLLE-EKKCLVLFVTHYPSLGEIL 160 (222)
T ss_pred hCCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHh-ccCCeEEEEcccHHHHHHH
Confidence 35799999999743211 0112222222 2478999999999886543
No 432
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=92.97 E-value=0.075 Score=53.40 Aligned_cols=23 Identities=35% Similarity=0.706 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 001457 184 NIIGVYGSGGIGKTTLMKQVMKQ 206 (1074)
Q Consensus 184 ~vi~I~G~gG~GKTtLa~~v~~~ 206 (1074)
++|+|+|+.|+||||||+.+...
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHcc
Confidence 48999999999999999999876
No 433
>PRK13768 GTPase; Provisional
Probab=92.96 E-value=0.45 Score=50.55 Aligned_cols=36 Identities=33% Similarity=0.355 Sum_probs=25.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhh-cCCCCeEEEEEe
Q 001457 183 INIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRV 218 (1074)
Q Consensus 183 ~~vi~I~G~gG~GKTtLa~~v~~~-~~~F~~~~wv~v 218 (1074)
..++.|.|.||+||||++..+... ...-..++.|+.
T Consensus 2 ~~~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~ 38 (253)
T PRK13768 2 MYIVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNL 38 (253)
T ss_pred cEEEEEECCCCccHHHHHHHHHHHHHhcCCceEEEEC
Confidence 368999999999999999888766 222233444443
No 434
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=92.96 E-value=0.16 Score=51.29 Aligned_cols=45 Identities=31% Similarity=0.413 Sum_probs=31.9
Q ss_pred HHHHHHHHhcCCCceeEEEEEcCCCCcHHHHHHHHHhh---cCCCCeEEEEE
Q 001457 169 IKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ---EIPFDKVIFVR 217 (1074)
Q Consensus 169 ~~~l~~~l~~~~~~~~vi~I~G~gG~GKTtLa~~v~~~---~~~F~~~~wv~ 217 (1074)
-...++.+.+ ..++.+.|++|.|||.||....-+ .+.|+.++++.
T Consensus 9 Q~~~~~al~~----~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~R 56 (205)
T PF02562_consen 9 QKFALDALLN----NDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITR 56 (205)
T ss_dssp HHHHHHHHHH-----SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE
T ss_pred HHHHHHHHHh----CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 3455556553 569999999999999999888766 78888888773
No 435
>PRK12678 transcription termination factor Rho; Provisional
Probab=92.95 E-value=0.36 Score=55.67 Aligned_cols=87 Identities=18% Similarity=0.201 Sum_probs=48.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh--cCCCCeEE-EEEecCCc-CHHHHHHHHHHHhc-cCCCcchH-----HHHHHHHHH
Q 001457 184 NIIGVYGSGGIGKTTLMKQVMKQ--EIPFDKVI-FVRVTQTP-DVKRVQDEIARFLN-TELEGDVE-----VLRAAFLSE 253 (1074)
Q Consensus 184 ~vi~I~G~gG~GKTtLa~~v~~~--~~~F~~~~-wv~vs~~~-~~~~~~~~i~~~l~-~~~~~~~~-----~~~~~~l~~ 253 (1074)
.-..|+|.+|+|||||++.+.+. ..+-++.+ .+-|.+.. .+..+.+.+-..+- ...+.... ...+..+-+
T Consensus 417 QR~LIvgpp~aGKTtLL~~IAn~i~~n~~~~~~ivvLIgERpeEVtdm~rsVkgeVVasT~D~p~~~~~~~a~~ai~~Ae 496 (672)
T PRK12678 417 QRGLIVSPPKAGKTTILQNIANAITTNNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSDHTTVAELAIERAK 496 (672)
T ss_pred CEeEEeCCCCCCHHHHHHHHHHHHhhcCCCeEEEEEEEeCchhhHHHHHHhccceEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 36789999999999999999997 33445444 44444433 23333222200111 11111111 112223334
Q ss_pred HH-HccCeEEEEEcCccc
Q 001457 254 RL-KRQKRVLIILDDLWG 270 (1074)
Q Consensus 254 ~l-~~~k~~LlVlDdv~~ 270 (1074)
++ ..++.+||++|++-.
T Consensus 497 ~fre~G~dVlillDSlTR 514 (672)
T PRK12678 497 RLVELGKDVVVLLDSITR 514 (672)
T ss_pred HHHHcCCCEEEEEeCchH
Confidence 44 258999999999864
No 436
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=92.89 E-value=0.13 Score=52.70 Aligned_cols=162 Identities=19% Similarity=0.268 Sum_probs=97.2
Q ss_pred CCCCCCccEEEccCCCCCCC-C---hhHHhcCCCccEEEecCCccCCCCC--------------CccCCccCCeeeccCC
Q 001457 527 QPKCPRLTTLFLQNNPFADI-P---NAFFEHTREIKNLDLSSTNISSLAP--------------SLPCLEKLRSLHLENT 588 (1074)
Q Consensus 527 ~~~~~~Lr~L~l~~~~~~~~-~---~~~~~~l~~L~~L~l~~~~~~~lp~--------------~i~~l~~Lr~L~L~~~ 588 (1074)
..+||+|+..+|+.|.+..- | ..++++-..|..|.+++|.+..+.. -...-+.|++.....|
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrN 167 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRN 167 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccc
Confidence 36788888888888875432 2 2345677788888888886542211 1234567888888888
Q ss_pred CCCC-Ccc-----ccCCCCccEEEeeCCCCccc------CccccCCCCCCEEeCCCCcCCCCcC---hhhhcCCCCcCEE
Q 001457 589 HLND-ASL-----IREFGELEVLILKGSRIVEL------PNGIGTVSNLKLLDLSNNLFLQVIP---PNVISKLSQLEEL 653 (1074)
Q Consensus 589 ~l~~-~~~-----i~~l~~L~~L~L~~~~i~~l------p~~i~~L~~L~~L~l~~~~~~~~~p---~~~i~~L~~L~~L 653 (1074)
++.. +.. +..-.+|+++.+..|.|..= -..+..+.+|+.||+.+|.++..-. ...+...+.|++|
T Consensus 168 Rlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL 247 (388)
T COG5238 168 RLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLREL 247 (388)
T ss_pred hhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhc
Confidence 8766 322 22335788888888877611 1234577889999998887543211 1224556778888
Q ss_pred EccCCcCCccccccccCCCCCcccc--ccCcCCCEEEEeecCc
Q 001457 654 YVGNSFGDWEVEETANGQNARFSEV--ASLTRLTVLYIHVSNT 694 (1074)
Q Consensus 654 ~l~~~~~~~~~~~~~~~~~~~~~~l--~~l~~L~~L~l~~~~~ 694 (1074)
.++.|...- . .....+..+ ...++|..|...+|..
T Consensus 248 ~lnDClls~--~----G~~~v~~~f~e~~~p~l~~L~~~Yne~ 284 (388)
T COG5238 248 RLNDCLLSN--E----GVKSVLRRFNEKFVPNLMPLPGDYNER 284 (388)
T ss_pred cccchhhcc--c----cHHHHHHHhhhhcCCCccccccchhhh
Confidence 888874321 0 001111111 2345677777777653
No 437
>PRK14738 gmk guanylate kinase; Provisional
Probab=92.87 E-value=0.091 Score=53.96 Aligned_cols=27 Identities=15% Similarity=0.417 Sum_probs=23.2
Q ss_pred CCceeEEEEEcCCCCcHHHHHHHHHhh
Q 001457 180 SISINIIGVYGSGGIGKTTLMKQVMKQ 206 (1074)
Q Consensus 180 ~~~~~vi~I~G~gG~GKTtLa~~v~~~ 206 (1074)
....++|.|+|++|+|||||++.+...
T Consensus 10 ~~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 10 PAKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 334689999999999999999999765
No 438
>PRK06761 hypothetical protein; Provisional
Probab=92.86 E-value=0.12 Score=55.13 Aligned_cols=23 Identities=30% Similarity=0.381 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 001457 184 NIIGVYGSGGIGKTTLMKQVMKQ 206 (1074)
Q Consensus 184 ~vi~I~G~gG~GKTtLa~~v~~~ 206 (1074)
++|.|.|++|+||||+|+.+++.
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~ 26 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDI 26 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHh
Confidence 58999999999999999999998
No 439
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=92.82 E-value=0.22 Score=49.73 Aligned_cols=114 Identities=21% Similarity=0.239 Sum_probs=61.5
Q ss_pred HHHHHhcCCCceeEEEEEcCCCCcHHHHHHHHHhh----cCCCCe-EE-EEEecCCcCHHHHHHHHHHHh--------cc
Q 001457 172 VMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ----EIPFDK-VI-FVRVTQTPDVKRVQDEIARFL--------NT 237 (1074)
Q Consensus 172 l~~~l~~~~~~~~vi~I~G~gG~GKTtLa~~v~~~----~~~F~~-~~-wv~vs~~~~~~~~~~~i~~~l--------~~ 237 (1074)
++..+-.+. ..-..|.|++|+|||||.+.+..- .+.|-. .+ -|+-+. +|+..+ +.
T Consensus 128 li~~ly~~g--~lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDers---------EIag~~~gvpq~~~g~ 196 (308)
T COG3854 128 LIKDLYQNG--WLNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERS---------EIAGCLNGVPQHGRGR 196 (308)
T ss_pred HHHHHHhcC--ceeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccc---------hhhccccCCchhhhhh
Confidence 444554444 445678999999999999888765 445632 22 222111 122111 10
Q ss_pred CCCcchHHHHHHHHHHHHHccCeEEEEEcCccccccccccccCCCCCCCCeEEEEecCChhH
Q 001457 238 ELEGDVEVLRAAFLSERLKRQKRVLIILDDLWGKLDLAVVGIPYGEEHKGCKIILTSRFKEV 299 (1074)
Q Consensus 238 ~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~~~~~~~~~~~gs~iivTTR~~~v 299 (1074)
..+.........-+....+.--+=++|+|.+-..++-..+..++ +.|-++|.|..-..+
T Consensus 197 R~dVld~cpk~~gmmmaIrsm~PEViIvDEIGt~~d~~A~~ta~---~~GVkli~TaHG~~i 255 (308)
T COG3854 197 RMDVLDPCPKAEGMMMAIRSMSPEVIIVDEIGTEEDALAILTAL---HAGVKLITTAHGNGI 255 (308)
T ss_pred hhhhcccchHHHHHHHHHHhcCCcEEEEeccccHHHHHHHHHHH---hcCcEEEEeeccccH
Confidence 01100111111222333334567799999998887766554443 458888877654333
No 440
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=92.81 E-value=0.091 Score=49.77 Aligned_cols=24 Identities=33% Similarity=0.621 Sum_probs=21.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhh
Q 001457 183 INIIGVYGSGGIGKTTLMKQVMKQ 206 (1074)
Q Consensus 183 ~~vi~I~G~gG~GKTtLa~~v~~~ 206 (1074)
.++|.|+|.+|+||||+.+.+-..
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~ 27 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKE 27 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHH
Confidence 579999999999999999877654
No 441
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=92.80 E-value=0.8 Score=50.30 Aligned_cols=38 Identities=21% Similarity=0.368 Sum_probs=29.1
Q ss_pred HHHHHHHHhcCCCceeEEEEEcCCCCcHHHHHHHHHhh
Q 001457 169 IKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ 206 (1074)
Q Consensus 169 ~~~l~~~l~~~~~~~~vi~I~G~gG~GKTtLa~~v~~~ 206 (1074)
..++++.+........+|+|.|.+|+|||||+..+...
T Consensus 42 ~~~l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~~~ 79 (332)
T PRK09435 42 AQELLDALLPHTGNALRIGITGVPGVGKSTFIEALGMH 79 (332)
T ss_pred HHHHHHHHhhcCCCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 34556655443334789999999999999999998777
No 442
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=92.78 E-value=0.24 Score=61.18 Aligned_cols=60 Identities=15% Similarity=0.191 Sum_probs=37.7
Q ss_pred cCcchHHHHHHHHHHHhcCCCceeEEEEEcCCCCcHHHHHHHHHhh-cCCCCeEEEEEecC
Q 001457 161 PLKSALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQ 220 (1074)
Q Consensus 161 ~~~~r~~~~~~l~~~l~~~~~~~~vi~I~G~gG~GKTtLa~~v~~~-~~~F~~~~wv~vs~ 220 (1074)
.+.|+...+..+.+.+..-...-.-|.|+|..|+|||++|+.+++. ...-...+.+++..
T Consensus 377 ~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~ 437 (686)
T PRK15429 377 EIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAA 437 (686)
T ss_pred ceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEeccc
Confidence 3455555666655544322112347889999999999999999987 22223445555544
No 443
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=92.74 E-value=0.085 Score=53.27 Aligned_cols=23 Identities=26% Similarity=0.551 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 001457 184 NIIGVYGSGGIGKTTLMKQVMKQ 206 (1074)
Q Consensus 184 ~vi~I~G~gG~GKTtLa~~v~~~ 206 (1074)
.+|+|+|+.|+|||||++.+...
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhcc
Confidence 47899999999999999999776
No 444
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=92.71 E-value=0.27 Score=52.36 Aligned_cols=29 Identities=24% Similarity=0.371 Sum_probs=25.3
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHhh-cCCC
Q 001457 182 SINIIGVYGSGGIGKTTLMKQVMKQ-EIPF 210 (1074)
Q Consensus 182 ~~~vi~I~G~gG~GKTtLa~~v~~~-~~~F 210 (1074)
+..+|.|.|.+|+|||||+..+.+. ....
T Consensus 103 ~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~ 132 (290)
T PRK10463 103 KQLVLNLVSSPGSGKTTLLTETLMRLKDSV 132 (290)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccCC
Confidence 4889999999999999999999988 4444
No 445
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=92.71 E-value=0.65 Score=49.07 Aligned_cols=93 Identities=22% Similarity=0.264 Sum_probs=53.1
Q ss_pred eEEEEEcCCCCcHHHHH-HHHHhhcCCCCeE-EEEEecCCc-CHHHHHHHHHHHhcc-------CCCcchHHH------H
Q 001457 184 NIIGVYGSGGIGKTTLM-KQVMKQEIPFDKV-IFVRVTQTP-DVKRVQDEIARFLNT-------ELEGDVEVL------R 247 (1074)
Q Consensus 184 ~vi~I~G~gG~GKTtLa-~~v~~~~~~F~~~-~wv~vs~~~-~~~~~~~~i~~~l~~-------~~~~~~~~~------~ 247 (1074)
.-++|.|..|+|||+|| ..+.+.. +-+.+ +++-+.+.. .+.++.+.+...-.. ....++... .
T Consensus 70 Qr~~Ifg~~g~GKt~L~l~~i~~~~-~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~a~~~ 148 (274)
T cd01132 70 QRELIIGDRQTGKTAIAIDTIINQK-GKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQYLAPYT 148 (274)
T ss_pred CEEEeeCCCCCCccHHHHHHHHHhc-CCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHHHHHHH
Confidence 46899999999999996 6666552 23444 667776654 355555555532111 011111111 1
Q ss_pred HHHHHHHHH-ccCeEEEEEcCcccc-cccccc
Q 001457 248 AAFLSERLK-RQKRVLIILDDLWGK-LDLAVV 277 (1074)
Q Consensus 248 ~~~l~~~l~-~~k~~LlVlDdv~~~-~~~~~~ 277 (1074)
+-.+-+++. .++..|+|+||+-.. ..+.++
T Consensus 149 a~aiAE~fr~~G~~Vlvl~DslTr~A~A~rEi 180 (274)
T cd01132 149 GCAMGEYFMDNGKHALIIYDDLSKQAVAYRQM 180 (274)
T ss_pred HHHHHHHHHHCCCCEEEEEcChHHHHHHHHHH
Confidence 223334443 489999999998654 344444
No 446
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=92.70 E-value=0.43 Score=54.17 Aligned_cols=88 Identities=15% Similarity=0.233 Sum_probs=46.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhhcCCCCeEEEEEecC-CcCHHHHHHHHHHHhccC-------CCcchH------HHHH
Q 001457 183 INIIGVYGSGGIGKTTLMKQVMKQEIPFDKVIFVRVTQ-TPDVKRVQDEIARFLNTE-------LEGDVE------VLRA 248 (1074)
Q Consensus 183 ~~vi~I~G~gG~GKTtLa~~v~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~-------~~~~~~------~~~~ 248 (1074)
-..++|+|..|+|||||++.+...... +..+...+.. ..++.++..+.+..-+.. ....+. ...+
T Consensus 155 GQ~igI~G~sGaGKSTLl~~I~g~~~~-dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d~s~~~rl~a~e~a 233 (434)
T PRK07196 155 GQRVGLMAGSGVGKSVLLGMITRYTQA-DVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPADESPLMRIKATELC 233 (434)
T ss_pred ceEEEEECCCCCCccHHHHHHhcccCC-CeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCCCChhhhHHHHHHH
Confidence 458999999999999999998876222 2333333322 223333333333322111 001110 1112
Q ss_pred HHHHHHHH-ccCeEEEEEcCcccc
Q 001457 249 AFLSERLK-RQKRVLIILDDLWGK 271 (1074)
Q Consensus 249 ~~l~~~l~-~~k~~LlVlDdv~~~ 271 (1074)
..+-+++. .++.+|+++||+-..
T Consensus 234 ~~iAEyfr~~g~~Vll~~Dsltr~ 257 (434)
T PRK07196 234 HAIATYYRDKGHDVLLLVDSLTRY 257 (434)
T ss_pred HHHHHHhhhccCCEEEeecchhHH
Confidence 22333332 489999999998653
No 447
>COG4240 Predicted kinase [General function prediction only]
Probab=92.69 E-value=0.33 Score=48.40 Aligned_cols=54 Identities=19% Similarity=0.254 Sum_probs=41.3
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHhh--cCCCCeEEEEEecCCcCHHHHHHHHHHHh
Q 001457 182 SINIIGVYGSGGIGKTTLMKQVMKQ--EIPFDKVIFVRVTQTPDVKRVQDEIARFL 235 (1074)
Q Consensus 182 ~~~vi~I~G~gG~GKTtLa~~v~~~--~~~F~~~~wv~vs~~~~~~~~~~~i~~~l 235 (1074)
..-+++|.|+-|+||||++..+++. .+.-..++..++.+-+-...-...++++.
T Consensus 49 rPli~gisGpQGSGKStls~~i~~~L~~kg~ert~~lSLDDlYlthadrl~La~q~ 104 (300)
T COG4240 49 RPLIVGISGPQGSGKSTLSALIVRLLAAKGLERTATLSLDDLYLTHADRLRLARQV 104 (300)
T ss_pred CceEEEeecCCCCchhhHHHHHHHHHHHhcccceEEeehhhhhcchHHHHHHHHhc
Confidence 3679999999999999999999999 33325677777776666666666666664
No 448
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=92.68 E-value=0.31 Score=55.39 Aligned_cols=27 Identities=33% Similarity=0.588 Sum_probs=22.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh-cCCC
Q 001457 184 NIIGVYGSGGIGKTTLMKQVMKQ-EIPF 210 (1074)
Q Consensus 184 ~vi~I~G~gG~GKTtLa~~v~~~-~~~F 210 (1074)
+.|.++|++|+|||++|+.+... ...|
T Consensus 109 ~~iLl~Gp~GtGKT~lAr~lA~~l~~pf 136 (412)
T PRK05342 109 SNILLIGPTGSGKTLLAQTLARILDVPF 136 (412)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHhCCCc
Confidence 56899999999999999999876 4443
No 449
>PRK03846 adenylylsulfate kinase; Provisional
Probab=92.66 E-value=0.16 Score=51.84 Aligned_cols=24 Identities=21% Similarity=0.245 Sum_probs=22.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhh
Q 001457 183 INIIGVYGSGGIGKTTLMKQVMKQ 206 (1074)
Q Consensus 183 ~~vi~I~G~gG~GKTtLa~~v~~~ 206 (1074)
..+|+|+|++|+||||+|+.+...
T Consensus 24 ~~~i~i~G~~GsGKSTla~~l~~~ 47 (198)
T PRK03846 24 GVVLWFTGLSGSGKSTVAGALEEA 47 (198)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
Confidence 579999999999999999999886
No 450
>PRK00300 gmk guanylate kinase; Provisional
Probab=92.65 E-value=0.091 Score=54.09 Aligned_cols=24 Identities=33% Similarity=0.540 Sum_probs=22.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhh
Q 001457 183 INIIGVYGSGGIGKTTLMKQVMKQ 206 (1074)
Q Consensus 183 ~~vi~I~G~gG~GKTtLa~~v~~~ 206 (1074)
-.+|+|+|++|+||||||+.+...
T Consensus 5 g~~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 468999999999999999999886
No 451
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=92.65 E-value=0.1 Score=46.35 Aligned_cols=22 Identities=32% Similarity=0.434 Sum_probs=19.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHH
Q 001457 183 INIIGVYGSGGIGKTTLMKQVM 204 (1074)
Q Consensus 183 ~~vi~I~G~gG~GKTtLa~~v~ 204 (1074)
-..++|+|+.|+|||||++.+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 3689999999999999999876
No 452
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.65 E-value=0.031 Score=54.68 Aligned_cols=68 Identities=13% Similarity=0.131 Sum_probs=47.9
Q ss_pred CCCcceeecCCccCcceeeccccccccccccceEEEecCCCccccccchhHhhhcCCCceecccccccce
Q 001457 825 LKRLRELVLVGLPKVLTIWKGNHSVVYLKTLKLMKVKDCGKLRYLFSRTLAEGLGNLEDLSILKCDLMEE 894 (1074)
Q Consensus 825 ~~~L~~L~L~~~~~L~~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~ 894 (1074)
+++++.|.+.+|..+.+....... +-.++|+.|+|++|+++++- ....+..+++|+.|.|.+.+.+..
T Consensus 124 l~~i~~l~l~~ck~~dD~~L~~l~-~~~~~L~~L~lsgC~rIT~~-GL~~L~~lknLr~L~l~~l~~v~~ 191 (221)
T KOG3864|consen 124 LRSIKSLSLANCKYFDDWCLERLG-GLAPSLQDLDLSGCPRITDG-GLACLLKLKNLRRLHLYDLPYVAN 191 (221)
T ss_pred cchhhhheeccccchhhHHHHHhc-ccccchheeeccCCCeechh-HHHHHHHhhhhHHHHhcCchhhhc
Confidence 677777778888777665433332 25688888888888888875 234567788888888888655443
No 453
>PLN02348 phosphoribulokinase
Probab=92.64 E-value=0.18 Score=55.85 Aligned_cols=26 Identities=27% Similarity=0.489 Sum_probs=23.5
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHhh
Q 001457 181 ISINIIGVYGSGGIGKTTLMKQVMKQ 206 (1074)
Q Consensus 181 ~~~~vi~I~G~gG~GKTtLa~~v~~~ 206 (1074)
....+|+|.|.+|+||||+|+.+.+.
T Consensus 47 ~~p~IIGIaG~SGSGKSTfA~~L~~~ 72 (395)
T PLN02348 47 DGTVVIGLAADSGCGKSTFMRRLTSV 72 (395)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 34789999999999999999999877
No 454
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=92.62 E-value=0.62 Score=53.13 Aligned_cols=24 Identities=29% Similarity=0.275 Sum_probs=21.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhh
Q 001457 183 INIIGVYGSGGIGKTTLMKQVMKQ 206 (1074)
Q Consensus 183 ~~vi~I~G~gG~GKTtLa~~v~~~ 206 (1074)
..+|.++|.+|+||||.|..++..
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~~ 122 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAYY 122 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHH
Confidence 679999999999999998887766
No 455
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=92.61 E-value=0.18 Score=55.84 Aligned_cols=59 Identities=12% Similarity=0.062 Sum_probs=34.9
Q ss_pred CcchHHHHHHHHHHHhcCCCceeEEEEEcCCCCcHHHHHHHHHhh-cCCCCeEEEEEecC
Q 001457 162 LKSALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQ 220 (1074)
Q Consensus 162 ~~~r~~~~~~l~~~l~~~~~~~~vi~I~G~gG~GKTtLa~~v~~~-~~~F~~~~wv~vs~ 220 (1074)
+.|+...+.++.+.+..-...-.-|.|+|-.|+||+++|+.++.. ...-...+.|++..
T Consensus 8 liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~ 67 (326)
T PRK11608 8 LLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAA 67 (326)
T ss_pred cEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCC
Confidence 334445555555544322111346789999999999999999876 22222334455444
No 456
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=92.60 E-value=0.16 Score=53.20 Aligned_cols=65 Identities=18% Similarity=0.255 Sum_probs=45.4
Q ss_pred HHHHHHHHhcCCCceeEEEEEcCCCCcHHHHHHHHHhh---cCCCCeEEEEEecCCcCHHHHHHHHHH
Q 001457 169 IKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ---EIPFDKVIFVRVTQTPDVKRVQDEIAR 233 (1074)
Q Consensus 169 ~~~l~~~l~~~~~~~~vi~I~G~gG~GKTtLa~~v~~~---~~~F~~~~wv~vs~~~~~~~~~~~i~~ 233 (1074)
-.+++..+.....+-.+|+|.|.||+||+||.-.+... +++--.++=|+=|..++--.++.+=++
T Consensus 37 a~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiR 104 (323)
T COG1703 37 ARELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIR 104 (323)
T ss_pred HHHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhh
Confidence 35677777766666789999999999999999887776 333334445555666666566555433
No 457
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=92.58 E-value=0.11 Score=53.20 Aligned_cols=28 Identities=36% Similarity=0.386 Sum_probs=23.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhh-cCCC
Q 001457 183 INIIGVYGSGGIGKTTLMKQVMKQ-EIPF 210 (1074)
Q Consensus 183 ~~vi~I~G~gG~GKTtLa~~v~~~-~~~F 210 (1074)
..+|.++||+|+||||..+.++.+ ...+
T Consensus 19 p~~ilVvGMAGSGKTTF~QrL~~hl~~~~ 47 (366)
T KOG1532|consen 19 PVIILVVGMAGSGKTTFMQRLNSHLHAKK 47 (366)
T ss_pred CcEEEEEecCCCCchhHHHHHHHHHhhcc
Confidence 568899999999999999999988 4433
No 458
>PRK00279 adk adenylate kinase; Reviewed
Probab=92.58 E-value=0.47 Score=49.20 Aligned_cols=22 Identities=27% Similarity=0.357 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 001457 185 IIGVYGSGGIGKTTLMKQVMKQ 206 (1074)
Q Consensus 185 vi~I~G~gG~GKTtLa~~v~~~ 206 (1074)
.|.|.|++|+||||+|+.+...
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~ 23 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEK 23 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999876
No 459
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.55 E-value=0.079 Score=29.66 Aligned_cols=16 Identities=38% Similarity=0.630 Sum_probs=7.2
Q ss_pred CccEEEeeCCCCcccC
Q 001457 601 ELEVLILKGSRIVELP 616 (1074)
Q Consensus 601 ~L~~L~L~~~~i~~lp 616 (1074)
+|++|++++|+++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4566666666655554
No 460
>PRK14530 adenylate kinase; Provisional
Probab=92.51 E-value=0.099 Score=54.24 Aligned_cols=23 Identities=26% Similarity=0.335 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 001457 184 NIIGVYGSGGIGKTTLMKQVMKQ 206 (1074)
Q Consensus 184 ~vi~I~G~gG~GKTtLa~~v~~~ 206 (1074)
+.|.|+|++|+||||+|+.+...
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~ 26 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEE 26 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999876
No 461
>PRK13948 shikimate kinase; Provisional
Probab=92.49 E-value=0.11 Score=51.81 Aligned_cols=24 Identities=17% Similarity=0.318 Sum_probs=22.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhh
Q 001457 183 INIIGVYGSGGIGKTTLMKQVMKQ 206 (1074)
Q Consensus 183 ~~vi~I~G~gG~GKTtLa~~v~~~ 206 (1074)
.+.|.++|+.|+||||+++.+.+.
T Consensus 10 ~~~I~LiG~~GsGKSTvg~~La~~ 33 (182)
T PRK13948 10 VTWVALAGFMGTGKSRIGWELSRA 33 (182)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999999887
No 462
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=92.48 E-value=0.1 Score=50.90 Aligned_cols=21 Identities=38% Similarity=0.439 Sum_probs=19.6
Q ss_pred EEEEcCCCCcHHHHHHHHHhh
Q 001457 186 IGVYGSGGIGKTTLMKQVMKQ 206 (1074)
Q Consensus 186 i~I~G~gG~GKTtLa~~v~~~ 206 (1074)
|.|+|++|+||||+|+.+...
T Consensus 2 i~l~G~~GsGKstla~~la~~ 22 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKA 22 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHH
Confidence 789999999999999999876
No 463
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=92.47 E-value=0.14 Score=52.39 Aligned_cols=116 Identities=14% Similarity=0.131 Sum_probs=57.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhh--cCCCCeEEEEEecCCcCHHHHHHHHHHHhccCCCcc---h-HHHHHHHHHHHHH
Q 001457 183 INIIGVYGSGGIGKTTLMKQVMKQ--EIPFDKVIFVRVTQTPDVKRVQDEIARFLNTELEGD---V-EVLRAAFLSERLK 256 (1074)
Q Consensus 183 ~~vi~I~G~gG~GKTtLa~~v~~~--~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~---~-~~~~~~~l~~~l~ 256 (1074)
.+++.|.|+.|.||||+.+.+..- -.+.. .+|.... .. -.+...|...++...... + -.....++...+.
T Consensus 29 ~~~~~l~G~n~~GKstll~~i~~~~~la~~G--~~vpa~~-~~-l~~~d~I~~~~~~~d~~~~~~S~fs~e~~~~~~il~ 104 (204)
T cd03282 29 SRFHIITGPNMSGKSTYLKQIALLAIMAQIG--CFVPAEY-AT-LPIFNRLLSRLSNDDSMERNLSTFASEMSETAYILD 104 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHHHcC--CCcchhh-cC-ccChhheeEecCCccccchhhhHHHHHHHHHHHHHH
Confidence 478999999999999999998755 11111 1111100 00 122223333332221100 0 0111112222221
Q ss_pred -ccCeEEEEEcCcccc---cc----ccccccCCCCCCCCeEEEEecCChhHHhhcc
Q 001457 257 -RQKRVLIILDDLWGK---LD----LAVVGIPYGEEHKGCKIILTSRFKEVCDEME 304 (1074)
Q Consensus 257 -~~k~~LlVlDdv~~~---~~----~~~~~~~~~~~~~gs~iivTTR~~~v~~~~~ 304 (1074)
..++-|+++|+.... .+ ...+...+. ..|+.+|+||-..+++....
T Consensus 105 ~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~--~~~~~~i~~TH~~~l~~~~~ 158 (204)
T cd03282 105 YADGDSLVLIDELGRGTSSADGFAISLAILECLI--KKESTVFFATHFRDIAAILG 158 (204)
T ss_pred hcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHH--hcCCEEEEECChHHHHHHhh
Confidence 246889999997432 11 111112221 23789999999998876554
No 464
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=92.40 E-value=0.11 Score=51.65 Aligned_cols=24 Identities=33% Similarity=0.390 Sum_probs=21.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhh
Q 001457 183 INIIGVYGSGGIGKTTLMKQVMKQ 206 (1074)
Q Consensus 183 ~~vi~I~G~gG~GKTtLa~~v~~~ 206 (1074)
...|.|+|+.|+||||+|+.+.+.
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~ 27 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQ 27 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHH
Confidence 346999999999999999999987
No 465
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=92.38 E-value=0.12 Score=50.14 Aligned_cols=27 Identities=33% Similarity=0.506 Sum_probs=23.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh-cCCC
Q 001457 184 NIIGVYGSGGIGKTTLMKQVMKQ-EIPF 210 (1074)
Q Consensus 184 ~vi~I~G~gG~GKTtLa~~v~~~-~~~F 210 (1074)
+-|.++||.|+||||+.+.+.+. .-+|
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F 30 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPF 30 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCc
Confidence 35789999999999999999988 5555
No 466
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=92.37 E-value=0.066 Score=53.99 Aligned_cols=22 Identities=27% Similarity=0.308 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 001457 185 IIGVYGSGGIGKTTLMKQVMKQ 206 (1074)
Q Consensus 185 vi~I~G~gG~GKTtLa~~v~~~ 206 (1074)
++.|.|..|.||||+.+.+.-.
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~~ 22 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGLI 22 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHHH
Confidence 4789999999999999998843
No 467
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=92.34 E-value=0.14 Score=52.64 Aligned_cols=25 Identities=28% Similarity=0.567 Sum_probs=23.4
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHhh
Q 001457 182 SINIIGVYGSGGIGKTTLMKQVMKQ 206 (1074)
Q Consensus 182 ~~~vi~I~G~gG~GKTtLa~~v~~~ 206 (1074)
++++|+++|+.|+|||||..++...
T Consensus 21 ~~~~i~~~G~~gsGKTTli~~l~~~ 45 (207)
T TIGR00073 21 GLVVLNFMSSPGSGKTTLIEKLIDN 45 (207)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 4999999999999999999998877
No 468
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=92.33 E-value=0.11 Score=47.84 Aligned_cols=21 Identities=38% Similarity=0.708 Sum_probs=19.5
Q ss_pred EEEEcCCCCcHHHHHHHHHhh
Q 001457 186 IGVYGSGGIGKTTLMKQVMKQ 206 (1074)
Q Consensus 186 i~I~G~gG~GKTtLa~~v~~~ 206 (1074)
|.|+|..|+|||||.+.+.+.
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~ 22 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGG 22 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHhcC
Confidence 789999999999999999876
No 469
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=92.33 E-value=0.26 Score=50.33 Aligned_cols=22 Identities=36% Similarity=0.524 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 001457 185 IIGVYGSGGIGKTTLMKQVMKQ 206 (1074)
Q Consensus 185 vi~I~G~gG~GKTtLa~~v~~~ 206 (1074)
+|+|.|+.|+||||+++.+.+.
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~ 23 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAER 23 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7899999999999999999988
No 470
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=92.28 E-value=0.16 Score=53.30 Aligned_cols=33 Identities=33% Similarity=0.374 Sum_probs=22.6
Q ss_pred EEcCCCCcHHHHHHHHHhh-cCCCCeEEEEEecC
Q 001457 188 VYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQ 220 (1074)
Q Consensus 188 I~G~gG~GKTtLa~~v~~~-~~~F~~~~wv~vs~ 220 (1074)
|+|++|+||||+++.+.+. ...-..++-|+...
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~~~~~~~vNLDP 34 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESNGRDVYIVNLDP 34 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT-S-EEEEE--T
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCceEEEcch
Confidence 6899999999999999998 44444455565543
No 471
>PRK13975 thymidylate kinase; Provisional
Probab=92.28 E-value=0.12 Score=52.80 Aligned_cols=23 Identities=35% Similarity=0.400 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 001457 184 NIIGVYGSGGIGKTTLMKQVMKQ 206 (1074)
Q Consensus 184 ~vi~I~G~gG~GKTtLa~~v~~~ 206 (1074)
.+|+|.|+.|+||||+|+.+...
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~ 25 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEK 25 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999999988
No 472
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=92.26 E-value=0.12 Score=52.22 Aligned_cols=24 Identities=25% Similarity=0.362 Sum_probs=22.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhh
Q 001457 183 INIIGVYGSGGIGKTTLMKQVMKQ 206 (1074)
Q Consensus 183 ~~vi~I~G~gG~GKTtLa~~v~~~ 206 (1074)
..+|.|.|.+|+||||+|+.+...
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~ 26 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARH 26 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999999886
No 473
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=92.24 E-value=0.66 Score=52.92 Aligned_cols=88 Identities=18% Similarity=0.344 Sum_probs=54.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh--cCCCCeEEEEEecCCc-CHHHHHHHHHHHhccC-------CCcchHH------HH
Q 001457 184 NIIGVYGSGGIGKTTLMKQVMKQ--EIPFDKVIFVRVTQTP-DVKRVQDEIARFLNTE-------LEGDVEV------LR 247 (1074)
Q Consensus 184 ~vi~I~G~gG~GKTtLa~~v~~~--~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~-------~~~~~~~------~~ 247 (1074)
.-++|.|.+|+|||||+.++... .++=+.++++-+.+.. .+.++.+++...-... ....+.. ..
T Consensus 145 QR~gIfa~~GvGKt~Ll~~i~~~~~~~~~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a~~~ 224 (463)
T PRK09280 145 GKIGLFGGAGVGKTVLIQELINNIAKEHGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRVALT 224 (463)
T ss_pred CEEEeecCCCCChhHHHHHHHHHHHhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHHHH
Confidence 46899999999999999998766 3333567787776544 4556666665432110 1111111 11
Q ss_pred HHHHHHHHH--ccCeEEEEEcCcccc
Q 001457 248 AAFLSERLK--RQKRVLIILDDLWGK 271 (1074)
Q Consensus 248 ~~~l~~~l~--~~k~~LlVlDdv~~~ 271 (1074)
+-.+-+++. +++++|+++|++-..
T Consensus 225 a~tiAEyfrd~~G~~VLll~DslTR~ 250 (463)
T PRK09280 225 GLTMAEYFRDVEGQDVLLFIDNIFRF 250 (463)
T ss_pred HHHHHHHHHHhcCCceEEEecchHHH
Confidence 233445552 489999999998643
No 474
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=92.24 E-value=0.7 Score=52.54 Aligned_cols=88 Identities=18% Similarity=0.351 Sum_probs=55.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh--cCCCCeEEEEEecCCc-CHHHHHHHHHHHhccC-------CCcchHH------HH
Q 001457 184 NIIGVYGSGGIGKTTLMKQVMKQ--EIPFDKVIFVRVTQTP-DVKRVQDEIARFLNTE-------LEGDVEV------LR 247 (1074)
Q Consensus 184 ~vi~I~G~gG~GKTtLa~~v~~~--~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~-------~~~~~~~------~~ 247 (1074)
.-++|.|.+|+|||||+.++... .++=+.++++-+.+.. .+.++..++...-... ....+.. ..
T Consensus 144 Qr~~If~~~G~GKt~L~~~~~~~~~~~~~~v~V~alIGER~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~~a~~~ 223 (461)
T TIGR01039 144 GKIGLFGGAGVGKTVLIQELINNIAKEHGGYSVFAGVGERTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARMRVALT 223 (461)
T ss_pred CEEEeecCCCCChHHHHHHHHHHHHhcCCCeEEEEEecCCchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHHHH
Confidence 46899999999999999998876 3333577788776543 4566666664321110 1111111 12
Q ss_pred HHHHHHHHH--ccCeEEEEEcCcccc
Q 001457 248 AAFLSERLK--RQKRVLIILDDLWGK 271 (1074)
Q Consensus 248 ~~~l~~~l~--~~k~~LlVlDdv~~~ 271 (1074)
+-.+-+++. +++.+|+|+||+-..
T Consensus 224 a~tiAEyfrd~~G~~VLll~DslTR~ 249 (461)
T TIGR01039 224 GLTMAEYFRDEQGQDVLLFIDNIFRF 249 (461)
T ss_pred HHHHHHHHHHhcCCeeEEEecchhHH
Confidence 234556664 379999999998653
No 475
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=92.24 E-value=0.63 Score=46.86 Aligned_cols=24 Identities=29% Similarity=0.376 Sum_probs=22.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhh
Q 001457 183 INIIGVYGSGGIGKTTLMKQVMKQ 206 (1074)
Q Consensus 183 ~~vi~I~G~gG~GKTtLa~~v~~~ 206 (1074)
..+|.|.|.+|+||||+|+.+...
T Consensus 18 ~~~i~i~G~~GsGKstla~~l~~~ 41 (184)
T TIGR00455 18 GVVIWLTGLSGSGKSTIANALEKK 41 (184)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 469999999999999999999877
No 476
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=92.23 E-value=0.17 Score=49.70 Aligned_cols=21 Identities=48% Similarity=0.797 Sum_probs=18.8
Q ss_pred EEEEcCCCCcHHHHHHHHHhh
Q 001457 186 IGVYGSGGIGKTTLMKQVMKQ 206 (1074)
Q Consensus 186 i~I~G~gG~GKTtLa~~v~~~ 206 (1074)
|.|.|.+|+|||||++.+.+.
T Consensus 2 i~iTG~pG~GKTTll~k~i~~ 22 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEE 22 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHH
Confidence 689999999999999999888
No 477
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=92.21 E-value=0.63 Score=43.52 Aligned_cols=27 Identities=33% Similarity=0.546 Sum_probs=23.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh-cCCC
Q 001457 184 NIIGVYGSGGIGKTTLMKQVMKQ-EIPF 210 (1074)
Q Consensus 184 ~vi~I~G~gG~GKTtLa~~v~~~-~~~F 210 (1074)
.+|.|.|.+|.||||+++++... +..|
T Consensus 13 ~~i~vmGvsGsGKSTigk~L~~~l~~~F 40 (191)
T KOG3354|consen 13 YVIVVMGVSGSGKSTIGKALSEELGLKF 40 (191)
T ss_pred eeEEEEecCCCChhhHHHHHHHHhCCcc
Confidence 49999999999999999999988 5444
No 478
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=92.18 E-value=0.096 Score=51.61 Aligned_cols=21 Identities=24% Similarity=0.465 Sum_probs=19.1
Q ss_pred EEEEcCCCCcHHHHHHHHHhh
Q 001457 186 IGVYGSGGIGKTTLMKQVMKQ 206 (1074)
Q Consensus 186 i~I~G~gG~GKTtLa~~v~~~ 206 (1074)
|.|+|++|+||||+|+.+...
T Consensus 1 i~l~G~~GsGKSTla~~l~~~ 21 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHR 21 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999876
No 479
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=92.18 E-value=0.23 Score=54.05 Aligned_cols=48 Identities=27% Similarity=0.340 Sum_probs=34.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhh-cCCCCeEEEEEecCCcCHHHHHHH
Q 001457 183 INIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKRVQDE 230 (1074)
Q Consensus 183 ~~vi~I~G~gG~GKTtLa~~v~~~-~~~F~~~~wv~vs~~~~~~~~~~~ 230 (1074)
.+++.+.|.||+||||+|....-. ......+.-|++....+...++..
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlvStDPAhsL~d~f~~ 50 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLVSTDPAHSLGDVFDL 50 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHcCCcEEEEEeCCCCchHhhhcc
Confidence 579999999999999999886555 222255777777776666665544
No 480
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=92.15 E-value=0.9 Score=48.10 Aligned_cols=48 Identities=13% Similarity=0.248 Sum_probs=35.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh--cCCCCeEEEEEecCCcCHHHHHHHHHH
Q 001457 184 NIIGVYGSGGIGKTTLMKQVMKQ--EIPFDKVIFVRVTQTPDVKRVQDEIAR 233 (1074)
Q Consensus 184 ~vi~I~G~gG~GKTtLa~~v~~~--~~~F~~~~wv~vs~~~~~~~~~~~i~~ 233 (1074)
.++.|.|.+|+|||++|.++..+ ..+=..++|++... +..++...++.
T Consensus 14 ~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~--~~~~~~~r~~~ 63 (242)
T cd00984 14 DLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEM--SKEQLLQRLLA 63 (242)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCC--CHHHHHHHHHH
Confidence 58999999999999999998777 33234677776555 45666666543
No 481
>PRK13946 shikimate kinase; Provisional
Probab=92.11 E-value=0.13 Score=51.84 Aligned_cols=24 Identities=21% Similarity=0.299 Sum_probs=22.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhh
Q 001457 183 INIIGVYGSGGIGKTTLMKQVMKQ 206 (1074)
Q Consensus 183 ~~vi~I~G~gG~GKTtLa~~v~~~ 206 (1074)
.+.|.++|++|+||||+++.+.+.
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~ 33 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATM 33 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999987
No 482
>PRK13695 putative NTPase; Provisional
Probab=92.11 E-value=0.17 Score=50.38 Aligned_cols=32 Identities=34% Similarity=0.500 Sum_probs=24.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh--cCCCCeEEEE
Q 001457 185 IIGVYGSGGIGKTTLMKQVMKQ--EIPFDKVIFV 216 (1074)
Q Consensus 185 vi~I~G~gG~GKTtLa~~v~~~--~~~F~~~~wv 216 (1074)
.|+|+|.+|+|||||++.+++. ...+....|+
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~~~G~~~~g~~ 35 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLKEEGYKVGGFY 35 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 4789999999999999999887 3345444454
No 483
>PRK09099 type III secretion system ATPase; Provisional
Probab=92.07 E-value=0.6 Score=53.19 Aligned_cols=88 Identities=20% Similarity=0.292 Sum_probs=50.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhhcCCCCeEEEEEec-CCcCHHHHHHHHHHHhccC-------CCcchHH------HHH
Q 001457 183 INIIGVYGSGGIGKTTLMKQVMKQEIPFDKVIFVRVT-QTPDVKRVQDEIARFLNTE-------LEGDVEV------LRA 248 (1074)
Q Consensus 183 ~~vi~I~G~gG~GKTtLa~~v~~~~~~F~~~~wv~vs-~~~~~~~~~~~i~~~l~~~-------~~~~~~~------~~~ 248 (1074)
-..++|.|..|+|||||++.+...... +..+.+-+. ....+.++.+.+...-+.. ....+.. ..+
T Consensus 163 Gq~~~I~G~sG~GKTtLl~~ia~~~~~-d~~vi~~iGer~~ev~ef~~~~~~~~~l~rtvvv~~tsd~p~~~r~~a~~~a 241 (441)
T PRK09099 163 GQRMGIFAPAGVGKSTLMGMFARGTQC-DVNVIALIGERGREVREFIELILGEDGMARSVVVCATSDRSSIERAKAAYVA 241 (441)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCC-CeEEEEEEccChHHHHHHHHHHhhcCCcceEEEEEECCCCCHHHHHHHHHHH
Confidence 358999999999999999999876211 223333333 3334555555554332111 0111111 112
Q ss_pred HHHHHHHH-ccCeEEEEEcCcccc
Q 001457 249 AFLSERLK-RQKRVLIILDDLWGK 271 (1074)
Q Consensus 249 ~~l~~~l~-~~k~~LlVlDdv~~~ 271 (1074)
-.+-+++. .++.+|+++||+-..
T Consensus 242 ~tiAEyfrd~G~~VLl~~DslTr~ 265 (441)
T PRK09099 242 TAIAEYFRDRGLRVLLMMDSLTRF 265 (441)
T ss_pred HHHHHHHHHcCCCEEEeccchhHH
Confidence 23444443 589999999998653
No 484
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=92.05 E-value=0.36 Score=49.60 Aligned_cols=24 Identities=25% Similarity=0.416 Sum_probs=21.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhh
Q 001457 183 INIIGVYGSGGIGKTTLMKQVMKQ 206 (1074)
Q Consensus 183 ~~vi~I~G~gG~GKTtLa~~v~~~ 206 (1074)
...|+|+|.+|+|||||.+.+.+.
T Consensus 41 ~~~I~iiG~~g~GKStLl~~l~~~ 64 (204)
T cd01878 41 IPTVALVGYTNAGKSTLFNALTGA 64 (204)
T ss_pred CCeEEEECCCCCCHHHHHHHHhcc
Confidence 678999999999999999988876
No 485
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=92.01 E-value=0.37 Score=53.86 Aligned_cols=74 Identities=20% Similarity=0.384 Sum_probs=44.6
Q ss_pred CcchHHHHHHHHHHHhc---------C---CCceeEEEEEcCCCCcHHHHHHHHHhh-cCCC---CeEEEEEec-CCcCH
Q 001457 162 LKSALEVIKSVMKLLKD---------N---SISINIIGVYGSGGIGKTTLMKQVMKQ-EIPF---DKVIFVRVT-QTPDV 224 (1074)
Q Consensus 162 ~~~r~~~~~~l~~~l~~---------~---~~~~~vi~I~G~gG~GKTtLa~~v~~~-~~~F---~~~~wv~vs-~~~~~ 224 (1074)
+.|.++.++.+..++.. . +...+.|.++|++|+||||+|+.+... ...| +..-|.... ...+.
T Consensus 17 IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~d~ 96 (443)
T PRK05201 17 IIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDV 96 (443)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccCCH
Confidence 44666667666655532 0 111367899999999999999999888 4433 222222211 12255
Q ss_pred HHHHHHHHHHh
Q 001457 225 KRVQDEIARFL 235 (1074)
Q Consensus 225 ~~~~~~i~~~l 235 (1074)
..+.+++....
T Consensus 97 e~~ir~L~~~A 107 (443)
T PRK05201 97 ESIIRDLVEIA 107 (443)
T ss_pred HHHHHHHHHHH
Confidence 66666665544
No 486
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=92.00 E-value=0.12 Score=49.19 Aligned_cols=33 Identities=30% Similarity=0.505 Sum_probs=25.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhcCCCCeEEEE
Q 001457 184 NIIGVYGSGGIGKTTLMKQVMKQEIPFDKVIFV 216 (1074)
Q Consensus 184 ~vi~I~G~gG~GKTtLa~~v~~~~~~F~~~~wv 216 (1074)
.+++|+|..|+|||||.+.+..........+++
T Consensus 12 ~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~ 44 (137)
T PF00005_consen 12 EIVAIVGPNGSGKSTLLKALAGLLPPDSGSILI 44 (137)
T ss_dssp SEEEEEESTTSSHHHHHHHHTTSSHESEEEEEE
T ss_pred CEEEEEccCCCccccceeeeccccccccccccc
Confidence 489999999999999999998872223344443
No 487
>PRK00698 tmk thymidylate kinase; Validated
Probab=91.99 E-value=0.73 Score=47.30 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 001457 184 NIIGVYGSGGIGKTTLMKQVMKQ 206 (1074)
Q Consensus 184 ~vi~I~G~gG~GKTtLa~~v~~~ 206 (1074)
++|+|.|+.|+||||+++.+.+.
T Consensus 4 ~~I~ieG~~gsGKsT~~~~L~~~ 26 (205)
T PRK00698 4 MFITIEGIDGAGKSTQIELLKEL 26 (205)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999999887
No 488
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=91.98 E-value=0.65 Score=52.65 Aligned_cols=86 Identities=21% Similarity=0.370 Sum_probs=49.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhcCCCCeEEEEEecCCc-CHHHHHHHHHHHhcc-------CCCcchHH------HHHH
Q 001457 184 NIIGVYGSGGIGKTTLMKQVMKQEIPFDKVIFVRVTQTP-DVKRVQDEIARFLNT-------ELEGDVEV------LRAA 249 (1074)
Q Consensus 184 ~vi~I~G~gG~GKTtLa~~v~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~-------~~~~~~~~------~~~~ 249 (1074)
..++|+|..|+|||||++.+.+.... +..+...+.+.. .+.++.......-.. .....+.. ..+-
T Consensus 138 q~~~I~G~sG~GKTtLl~~I~~~~~~-~~~vi~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~tsd~~~~~r~~a~~~a~ 216 (411)
T TIGR03496 138 QRMGIFAGSGVGKSTLLGMMARYTEA-DVVVVGLIGERGREVKEFIEDILGEEGLARSVVVAATADESPLMRLRAAFYAT 216 (411)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCC-CEEEEEEEecChHHHHHHHHHHhhCCCcceEEEEEECCCCCHHHHHHHHHHHH
Confidence 47999999999999999988876222 344445555432 344444444332111 01111111 1122
Q ss_pred HHHHHHH-ccCeEEEEEcCccc
Q 001457 250 FLSERLK-RQKRVLIILDDLWG 270 (1074)
Q Consensus 250 ~l~~~l~-~~k~~LlVlDdv~~ 270 (1074)
.+-+++. .++++|+++||+-.
T Consensus 217 tiAEyfr~~G~~Vll~~Dsltr 238 (411)
T TIGR03496 217 AIAEYFRDQGKDVLLLMDSLTR 238 (411)
T ss_pred HHHHHHHHCCCCEEEEEeChHH
Confidence 3344442 58999999999864
No 489
>PRK06936 type III secretion system ATPase; Provisional
Probab=91.97 E-value=0.69 Score=52.48 Aligned_cols=87 Identities=17% Similarity=0.295 Sum_probs=53.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhhcCCCCeEEEEEecCCc-CHHHHHHHHHHHhccC-------CCcchHHH------HH
Q 001457 183 INIIGVYGSGGIGKTTLMKQVMKQEIPFDKVIFVRVTQTP-DVKRVQDEIARFLNTE-------LEGDVEVL------RA 248 (1074)
Q Consensus 183 ~~vi~I~G~gG~GKTtLa~~v~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~------~~ 248 (1074)
-..++|.|..|+|||||.+.+++... -+.++++-+.+.. .+.++....+..-+.. ....+... .+
T Consensus 162 Gq~~~I~G~sG~GKStLl~~Ia~~~~-~dv~V~~liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~~a~~~a 240 (439)
T PRK06936 162 GQRMGIFAAAGGGKSTLLASLIRSAE-VDVTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERAKAGFVA 240 (439)
T ss_pred CCEEEEECCCCCChHHHHHHHhcCCC-CCEEEEEEEccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHHHHHHHHH
Confidence 34899999999999999999998722 2567788777654 3444443333221110 01111111 12
Q ss_pred HHHHHHHH-ccCeEEEEEcCccc
Q 001457 249 AFLSERLK-RQKRVLIILDDLWG 270 (1074)
Q Consensus 249 ~~l~~~l~-~~k~~LlVlDdv~~ 270 (1074)
..+-+++. .++++|+++|++-.
T Consensus 241 ~tiAEyfrd~G~~Vll~~DslTR 263 (439)
T PRK06936 241 TSIAEYFRDQGKRVLLLMDSVTR 263 (439)
T ss_pred HHHHHHHHHcCCCEEEeccchhH
Confidence 23444442 58999999999864
No 490
>PRK14737 gmk guanylate kinase; Provisional
Probab=91.96 E-value=0.14 Score=51.51 Aligned_cols=24 Identities=17% Similarity=0.398 Sum_probs=22.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhh
Q 001457 183 INIIGVYGSGGIGKTTLMKQVMKQ 206 (1074)
Q Consensus 183 ~~vi~I~G~gG~GKTtLa~~v~~~ 206 (1074)
.++|.|+|++|+|||||++.+...
T Consensus 4 ~~~ivl~GpsG~GK~tl~~~l~~~ 27 (186)
T PRK14737 4 PKLFIISSVAGGGKSTIIQALLEE 27 (186)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 578999999999999999999876
No 491
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=91.95 E-value=0.22 Score=54.58 Aligned_cols=37 Identities=22% Similarity=0.406 Sum_probs=28.5
Q ss_pred HHHHHHHhcCCCceeEEEEEcCCCCcHHHHHHHHHhh
Q 001457 170 KSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ 206 (1074)
Q Consensus 170 ~~l~~~l~~~~~~~~vi~I~G~gG~GKTtLa~~v~~~ 206 (1074)
..+++.+........+|+|+|.+|+||||++..+...
T Consensus 21 ~~~~~~~~~~~~~~~~i~i~G~~G~GKttl~~~l~~~ 57 (300)
T TIGR00750 21 KQLLDRIMPYTGNAHRVGITGTPGAGKSTLLEALGME 57 (300)
T ss_pred HHHHHhCCcccCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 3455555443344789999999999999999998876
No 492
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=91.90 E-value=7.8 Score=42.50 Aligned_cols=46 Identities=15% Similarity=0.086 Sum_probs=32.8
Q ss_pred eEeCCCCCHHHHHHHHHHhcCCCC-C-CchhHHHHHHHHHHhCCChHH
Q 001457 308 YVQVEELTDEDRLILFKKKAGLPE-G-TKAFDRAAEEVVRQCGKLPNA 353 (1074)
Q Consensus 308 ~~~l~~L~~~~~~~lf~~~a~~~~-~-~~~~~~~~~~i~~~c~glPLa 353 (1074)
++++++++.+|+..++.-++.... . ....+...+++.-..+|.|--
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~e 305 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPRE 305 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHH
Confidence 789999999999999877765221 1 134455667777777888853
No 493
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=91.90 E-value=0.43 Score=57.37 Aligned_cols=71 Identities=14% Similarity=0.165 Sum_probs=45.3
Q ss_pred CcchHHHHHHHHHHHhcCCCceeEEEEEcCCCCcHHHHHHHHHhh--cCCCCeEEEEEecCCcCHHHHHHHHHHHhcc
Q 001457 162 LKSALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ--EIPFDKVIFVRVTQTPDVKRVQDEIARFLNT 237 (1074)
Q Consensus 162 ~~~r~~~~~~l~~~l~~~~~~~~vi~I~G~gG~GKTtLa~~v~~~--~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~ 237 (1074)
+.|.++.++.+...+.... .+.++|++|+||||+|+.+.+. ...|...+++. ....+...+++.++..++.
T Consensus 20 viG~~~a~~~l~~a~~~~~----~~ll~G~pG~GKT~la~~la~~l~~~~~~~~~~~~-n~~~~~~~~~~~v~~~~g~ 92 (608)
T TIGR00764 20 VIGQEEAVEIIKKAAKQKR----NVLLIGEPGVGKSMLAKAMAELLPDEELEDILVYP-NPEDPNMPRIVEVPAGEGR 92 (608)
T ss_pred ccCHHHHHHHHHHHHHcCC----CEEEECCCCCCHHHHHHHHHHHcCchhheeEEEEe-CCCCCchHHHHHHHHhhch
Confidence 4566666665555555432 5559999999999999999988 44444444332 2223445557777666653
No 494
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=91.88 E-value=0.65 Score=52.86 Aligned_cols=87 Identities=18% Similarity=0.314 Sum_probs=50.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhcCCCCeEEEEEecCCc-CHHHHHHHHHHHhccC-------CCcchH------HHHHH
Q 001457 184 NIIGVYGSGGIGKTTLMKQVMKQEIPFDKVIFVRVTQTP-DVKRVQDEIARFLNTE-------LEGDVE------VLRAA 249 (1074)
Q Consensus 184 ~vi~I~G~gG~GKTtLa~~v~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~-------~~~~~~------~~~~~ 249 (1074)
..++|+|..|+|||||++.+.+... .+.++...+.... ++.++...+...-+.. ....+. ...+.
T Consensus 169 qrigI~G~sG~GKSTLl~~I~g~~~-~dv~V~g~Ig~rg~ev~~~~~~~~~~~~l~rsvvv~atsd~~p~~r~~a~~~a~ 247 (451)
T PRK05688 169 QRLGLFAGTGVGKSVLLGMMTRFTE-ADIIVVGLIGERGREVKEFIEHILGEEGLKRSVVVASPADDAPLMRLRAAMYCT 247 (451)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCC-CCEEEEEEeCcCcHhHHHHHHHHhhcCCccEEEEEEECCCCCHHHHHHHHHHHH
Confidence 4799999999999999999887622 2344444444332 3445444444332111 011111 11122
Q ss_pred HHHHHHH-ccCeEEEEEcCcccc
Q 001457 250 FLSERLK-RQKRVLIILDDLWGK 271 (1074)
Q Consensus 250 ~l~~~l~-~~k~~LlVlDdv~~~ 271 (1074)
.+-+++. +++++|+++||+-..
T Consensus 248 aiAEyfrd~G~~VLl~~DslTR~ 270 (451)
T PRK05688 248 RIAEYFRDKGKNVLLLMDSLTRF 270 (451)
T ss_pred HHHHHHHHCCCCEEEEecchhHH
Confidence 3444443 589999999998653
No 495
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=91.87 E-value=0.34 Score=52.34 Aligned_cols=24 Identities=33% Similarity=0.375 Sum_probs=22.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhh
Q 001457 183 INIIGVYGSGGIGKTTLMKQVMKQ 206 (1074)
Q Consensus 183 ~~vi~I~G~gG~GKTtLa~~v~~~ 206 (1074)
-+-|..+|++|.|||-||++|+..
T Consensus 245 WkgvLm~GPPGTGKTlLAKAvATE 268 (491)
T KOG0738|consen 245 WKGVLMVGPPGTGKTLLAKAVATE 268 (491)
T ss_pred cceeeeeCCCCCcHHHHHHHHHHh
Confidence 467889999999999999999998
No 496
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=91.81 E-value=0.84 Score=50.88 Aligned_cols=41 Identities=22% Similarity=0.178 Sum_probs=28.4
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHhh-cCCCCeEEEEEecCCc
Q 001457 182 SINIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTP 222 (1074)
Q Consensus 182 ~~~vi~I~G~gG~GKTtLa~~v~~~-~~~F~~~~wv~vs~~~ 222 (1074)
..-+|+|.|..|+|||||++.+..- +.....+.-|++.+-+
T Consensus 211 ~PlIIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgvISiDDfY 252 (460)
T PLN03046 211 PPLVIGFSAPQGCGKTTLVFALDYLFRVTGRKSATLSIDDFY 252 (460)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhcccCCceEEEEECCcc
Confidence 4679999999999999999999665 3222233444544433
No 497
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=91.81 E-value=0.52 Score=46.39 Aligned_cols=42 Identities=19% Similarity=0.203 Sum_probs=26.6
Q ss_pred hHHHHHHHHHHHhcCCCceeEEEEEcCCCCcHHHHHHHHHhh
Q 001457 165 ALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ 206 (1074)
Q Consensus 165 r~~~~~~l~~~l~~~~~~~~vi~I~G~gG~GKTtLa~~v~~~ 206 (1074)
....+.++++.+..-.....-|.|+|..|+||+.+|+.+++.
T Consensus 4 ~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~ 45 (168)
T PF00158_consen 4 ESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNN 45 (168)
T ss_dssp -SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHh
Confidence 334444444444321111235569999999999999999998
No 498
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=91.80 E-value=0.17 Score=54.86 Aligned_cols=38 Identities=34% Similarity=0.593 Sum_probs=26.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh--cCCCCeEEEEEecCCc
Q 001457 184 NIIGVYGSGGIGKTTLMKQVMKQ--EIPFDKVIFVRVTQTP 222 (1074)
Q Consensus 184 ~vi~I~G~gG~GKTtLa~~v~~~--~~~F~~~~wv~vs~~~ 222 (1074)
+.|+|+|-||+||||+|..+... +..+ .+.-|+.....
T Consensus 1 ~~ia~~gKGGVGKTT~a~nLA~~La~~G~-~VlliD~D~q~ 40 (275)
T TIGR01287 1 RQIAIYGKGGIGKSTTTQNIAAALAEMGK-KVMIVGCDPKA 40 (275)
T ss_pred CeeEEeCCCcCcHHHHHHHHHHHHHHCCC-eEEEEeCCCCC
Confidence 47899999999999999888777 3333 34444544433
No 499
>PLN02796 D-glycerate 3-kinase
Probab=91.77 E-value=0.35 Score=52.76 Aligned_cols=25 Identities=32% Similarity=0.424 Sum_probs=22.8
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHhh
Q 001457 182 SINIIGVYGSGGIGKTTLMKQVMKQ 206 (1074)
Q Consensus 182 ~~~vi~I~G~gG~GKTtLa~~v~~~ 206 (1074)
..-+|+|.|..|+||||||+.+...
T Consensus 99 ~pliIGI~G~sGSGKSTLa~~L~~l 123 (347)
T PLN02796 99 PPLVIGISAPQGCGKTTLVFALVYL 123 (347)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHH
Confidence 3578999999999999999999887
No 500
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=91.76 E-value=0.88 Score=47.52 Aligned_cols=46 Identities=26% Similarity=0.314 Sum_probs=33.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhh-cCCCCeEEEEEecCCcCHHHHHHH
Q 001457 183 INIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKRVQDE 230 (1074)
Q Consensus 183 ~~vi~I~G~gG~GKTtLa~~v~~~-~~~F~~~~wv~vs~~~~~~~~~~~ 230 (1074)
-.++.|.|.+|+|||++|.++... -..=..++|++.... ..++.+.
T Consensus 16 g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~~--~~~l~~~ 62 (224)
T TIGR03880 16 GHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEER--EERILGY 62 (224)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCC--HHHHHHH
Confidence 569999999999999999988766 223356778887664 4444433
Done!