Query 001457
Match_columns 1074
No_of_seqs 428 out of 4808
Neff 9.8
Searched_HMMs 29240
Date Tue Mar 26 15:52:42 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001457.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_760-764//hhsearch_pdb/001457hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 1.0 1 1 399.7 20.6 309 163-490 131-472 (549)
2 3sfz_A APAF-1, apoptotic pepti 1.0 1 1 371.6 26.8 306 161-489 125-452 (1249)
3 1vt4_I APAF-1 related killer D 1.0 1 1 339.7 18.8 279 163-482 131-436 (1221)
4 1z6t_A APAF-1, apoptotic prote 1.0 1 1 304.1 27.6 303 161-487 125-450 (591)
5 3vq2_A TLR4, TOLL-like recepto 1.0 1 1 275.9 26.4 495 500-1043 23-555 (606)
6 3rgz_A Protein brassinosteroid 1.0 1 1 275.5 24.6 293 745-1065 417-767 (768)
7 3t6q_A CD180 antigen; protein- 1.0 1 1 272.8 32.1 483 500-1042 24-556 (606)
8 3rgz_A Protein brassinosteroid 1.0 1 1 272.8 28.1 481 529-1050 149-721 (768)
9 3vq2_A TLR4, TOLL-like recepto 1.0 1 1 268.1 34.6 488 512-1046 14-534 (606)
10 1ziw_A TOLL-like receptor 3; i 1.0 1 1 262.0 34.1 446 500-960 16-515 (680)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=1.00 E-value=1 Score=399.69 Aligned_cols=309 Identities=14% Similarity=0.173 Sum_probs=244.7
Q ss_pred CCHHHHHHHHHHHHHCC-CCCEEEEEEECCCCCCHHHHHHHHHH----H-CCCCCEEEEEEECCCC--CHHHHHHHHHHH
Q ss_conf 21399999999997229-98415999994899918899999986----1-3998839999956896--789999999998
Q 001457 163 KSALEVIKSVMKLLKDN-SISINIIGVYGSGGIGKTTLMKQVMK----Q-EIPFDKVIFVRVTQTP--DVKRVQDEIARF 234 (1074)
Q Consensus 163 ~~~~~~~~~l~~~l~~~-~~~~~vi~I~G~gGiGKTtLa~~v~~----~-~~~F~~~~wv~v~~~~--~~~~~~~~i~~~ 234 (1074)
+||+++++++.++|... +...++|+|+||||+||||||+++|+ . +.+|++++||++++.+ +...++..|+.+
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~ 210 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLM 210 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHH
T ss_conf 78417999999987251578962899986999988999999998406987466995799997898787999999999999
Q ss_pred HCCCCC--------CCHHHHHHHHHHHHHHCCC-EEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHCCC
Q ss_conf 334777--------4359999999999987047-0999981865412322026688899998099996388157752169
Q 001457 235 LNTELE--------GDVEVLRAAFLSERLKRQK-RVLIILDDLWGKLDLAVVGIPYGEEHKGCKIILTSRFKEVCDEMES 305 (1074)
Q Consensus 235 l~~~~~--------~~~~~~~~~~l~~~l~~~k-~~LiVlDdv~~~~~~~~~~~~~~~~~~gs~iivTTR~~~v~~~~~~ 305 (1074)
++.... ..........+++.+. ++ ||||||||||+.+++ .+. ...||+||||||++.++..++.
T Consensus 211 l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~-~~kr~LlVLDdv~~~~~~-~~~-----~~~gs~ilvTTR~~~v~~~~~~ 283 (549)
T 2a5y_B 211 LKSEDDLLNFPSVEHVTSVVLKRMICNALI-DRPNTLFVFDDVVQEETI-RWA-----QELRLRCLVTTRDVEISNAASQ 283 (549)
T ss_dssp HTTTSCCTTCCCCTTCCHHHHHHHHHHHHT-TSTTEEEEEEEECCHHHH-HHH-----HHTTCEEEEEESBGGGGGGCCS
T ss_pred HHCCCCCCCCCCCCCCCHHHHHHHHHHHHC-CCCCEEEEEECCCCCHHH-CCC-----CCCCCEEEEECCCHHHHHHCCC
T ss_conf 853755345555331469999999999976-898489999799971441-543-----2699889997497799997088
Q ss_pred C-CEEECCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCC
Q ss_conf 9-738589999898999999750999999036999999999918985799999999728990589999999730799998
Q 001457 306 T-NYVQVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLPNAIVIIGTALRHKPVREWNEAIKRKKASTPINV 384 (1074)
Q Consensus 306 ~-~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l~~~~~~~w~~~~~~l~~~~~~~~ 384 (1074)
. .+|++++|+.+++|+||.++++.....+...+++.+|+++|+|+||||+++|+.++.++ |+.+ +.+...... .
T Consensus 284 ~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~---w~~~-~~l~~~l~~-~ 358 (549)
T 2a5y_B 284 TCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATLMMFFKSCEPKT---FEKM-AQLNNKLES-R 358 (549)
T ss_dssp CEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSS---HHHH-HHHHHHHHH-H
T ss_pred CCEEEECCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCH---HHHH-HHHHHHHHC-C
T ss_conf 9738989998989999999987448998556899999999995998399999999844344---8999-875787613-6
Q ss_pred CCCHHHHHHHHHHHHCCCHHHHHHHHH-----------HHCCCCCCCCCCHHHHHHHHHHH--CCCCCCCCHHHHHHCHH
Q ss_conf 896388998998730378365889998-----------66089999865557899988550--10356654366530189
Q 001457 385 EGIPEEVVLCVALGYDQLETVAKSCLQ-----------FSCLFPPYYSVSMEEFVIHGLVD--RLFPQVGLLGEVGNRVH 451 (1074)
Q Consensus 385 ~~~~~~~~~~l~~sy~~L~~~~k~cf~-----------~~s~fp~~~~i~~~~li~~w~~~--g~i~~~~~~~~~~~~~~ 451 (1074)
...++..++.+||++||.++|.||+ |||+||+++.|+ +++|+|+ ||+...+......+.+
T Consensus 359 --~~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~~~~- 431 (549)
T 2a5y_B 359 --GLVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDDEVA- 431 (549)
T ss_dssp --CSSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTHHHH-
T ss_pred --CHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHEEEECCCCEEE----EEEEEEECCCEECCCCCCCCHHHHH-
T ss_conf --477789897516202267999997526522336743235608997666----5331101355002677899999999-
Q ss_pred HHHHHHHHCCCCCCCC--CCCCEEECHHHHHHHHHHHHHCC
Q ss_conf 9999998501244688--87422550247899999984319
Q 001457 452 PVVLRLISSSLLLEGD--RESCFRIHDDTRKVVKYIAAREG 490 (1074)
Q Consensus 452 ~~~~~L~~~~ll~~~~--~~~~~~mHdlv~~~~~~~~~~e~ 490 (1074)
.|+++|+++||++... ...+|+|||+||+||++++.+++
T Consensus 432 ~~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~ 472 (549)
T 2a5y_B 432 DRLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQT 472 (549)
T ss_dssp HHHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHH
T ss_pred HHHHHHHHCCCEEEECCCCCEEEEECHHHHHHHHHHHHHHH
T ss_conf 99999987588367147980499967699999999988989
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=1.00 E-value=1 Score=371.57 Aligned_cols=306 Identities=19% Similarity=0.282 Sum_probs=244.2
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHH----CCCC-CEEEEEEECCCCC--HHHHHHHHHH
Q ss_conf 6821399999999997229984159999948999188999999861----3998-8399999568967--8999999999
Q 001457 161 PLKSALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ----EIPF-DKVIFVRVTQTPD--VKRVQDEIAR 233 (1074)
Q Consensus 161 ~~~~~~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~----~~~F-~~~~wv~v~~~~~--~~~~~~~i~~ 233 (1074)
.++||+++++++.+.|...+...++|+|+||||+||||||+++|++ ..+| +.++|+++++..+ ....+..++.
T Consensus 125 ~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 204 (1249)
T 3sfz_A 125 IFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQNLCM 204 (1249)
T ss_dssp SCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHHHHHHH
T ss_pred EECCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHCCHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 41257999999999986135887779999189888889999986075678862788179999788572679999999999
Q ss_pred HHCCCCC-----CCHHHHHHHHHHHHHHCCC--EEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHH-CCC
Q ss_conf 8334777-----4359999999999987047--0999981865412322026688899998099996388157752-169
Q 001457 234 FLNTELE-----GDVEVLRAAFLSERLKRQK--RVLIILDDLWGKLDLAVVGIPYGEEHKGCKIILTSRFKEVCDE-MES 305 (1074)
Q Consensus 234 ~l~~~~~-----~~~~~~~~~~l~~~l~~~k--~~LiVlDdv~~~~~~~~~~~~~~~~~~gs~iivTTR~~~v~~~-~~~ 305 (1074)
.+..... ..........++..+. ++ |+||||||||+..+|..+ .+||+||||||++.++.. ++.
T Consensus 205 ~l~~~~~~~~~~~~~~~~~~~~l~~~l~-~~~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~~~~~~~~~~ 276 (1249)
T 3sfz_A 205 RLDQEESFSQRLPLNIEEAKDRLRVLML-RKHPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDKSVTDSVMGP 276 (1249)
T ss_dssp HHTTTCTTCSSCCSSHHHHHHHHHHHTS-SSSCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESSTTTTTTCCSC
T ss_pred HHHHHCCCCCCCCCCHHHHHHHHHHHHH-CCCCCEEEEEECCCCHHHHHHH-------CCCCEEEEECCCHHHHHHHCCC
T ss_conf 8655303334788777899999999973-5678789999567997788763-------6897899992778998763488
Q ss_pred CCEEECCC-CCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCC
Q ss_conf 97385899-99898999999750999999036999999999918985799999999728990589999999730799998
Q 001457 306 TNYVQVEE-LTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLPNAIVIIGTALRHKPVREWNEAIKRKKASTPINV 384 (1074)
Q Consensus 306 ~~~~~l~~-L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l~~~~~~~w~~~~~~l~~~~~~~~ 384 (1074)
...+++++ |+++++++||...++. ..+..++.+.+|+++|+|+||||+++|++|+.++ ..|.+.++.+.......+
T Consensus 277 ~~~~~~~~~l~~~~a~~l~~~~~~~--~~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~~~l~~l~~~~~~~~ 353 (1249)
T 3sfz_A 277 KHVVPVESGLGREKGLEILSLFVNM--KKEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAYYLRQLQNKQFKRI 353 (1249)
T ss_dssp BCCEECCSSCCHHHHHHHHHHHHTS--CSTTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHHHHHHHHHSCCCCCS
T ss_pred CEEEEECCCCCHHHHHHHHHHHHCC--CHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHHHC
T ss_conf 4379825888878899999986579--8134838899999984997799999999862480-579999999865044303
Q ss_pred CC----CHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHCHHHHHHHHHHC
Q ss_conf 89----63889989987303783658899986608999986555789998855010356654366530189999999850
Q 001457 385 EG----IPEEVVLCVALGYDQLETVAKSCLQFSCLFPPYYSVSMEEFVIHGLVDRLFPQVGLLGEVGNRVHPVVLRLISS 460 (1074)
Q Consensus 385 ~~----~~~~~~~~l~~sy~~L~~~~k~cf~~~s~fp~~~~i~~~~li~~w~~~g~i~~~~~~~~~~~~~~~~~~~L~~~ 460 (1074)
.. ..+.+..++.+||+.|++++|.||+|||+||+++.|+++.++.+|.+++ +.+..++++|+++
T Consensus 354 ~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~------------~~~~~~l~~L~~~ 421 (1249)
T 3sfz_A 354 RKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLET------------EEVEDILQEFVNK 421 (1249)
T ss_dssp SCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCCH------------HHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCEECHHHHHHHHCCCH------------HHHHHHHHHHHHC
T ss_conf 4655644677999999899867999999999728137997518999998858988------------8999999999744
Q ss_pred CCCCCCCCC--CCEEECHHHHHHHHHHHHHC
Q ss_conf 124468887--42255024789999998431
Q 001457 461 SLLLEGDRE--SCFRIHDDTRKVVKYIAARE 489 (1074)
Q Consensus 461 ~ll~~~~~~--~~~~mHdlv~~~~~~~~~~e 489 (1074)
||++..... .+|+|||+||+|++..+.++
T Consensus 422 sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 422 SLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp TSCEEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred CCEEEECCCCCEEEEECHHHHHHHHHHHHHH
T ss_conf 6338963798118996689999987450678
No 3
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=1.00 E-value=1 Score=339.70 Aligned_cols=279 Identities=19% Similarity=0.210 Sum_probs=221.9
Q ss_pred CCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHH---CCCCCE-EEEEEECCCCCHHHHHHHHHHHHCCC
Q ss_conf 21399999999997229984159999948999188999999861---399883-99999568967899999999983347
Q 001457 163 KSALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ---EIPFDK-VIFVRVTQTPDVKRVQDEIARFLNTE 238 (1074)
Q Consensus 163 ~~~~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~---~~~F~~-~~wv~v~~~~~~~~~~~~i~~~l~~~ 238 (1074)
+||+++++++.++|...+ ..++|+|+||||+||||||+++|++ +.+|+. ++|+++++.++...++..++..++..
T Consensus 131 VGRe~eLeeL~elL~~~d-~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~~i 209 (1221)
T 1vt4_I 131 VSRLQPYLKLRQALLELR-PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI 209 (1221)
T ss_dssp CCCHHHHHHHHHHHHHCC-SSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCC-CCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHC
T ss_conf 892899999999974358-9718999769996679999999971498874899389998289999999999999998622
Q ss_pred C------CC---C---HHHHHHHHHHHHHH--CCCEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHCC
Q ss_conf 7------74---3---59999999999987--047099998186541232202668889999809999638815775216
Q 001457 239 L------EG---D---VEVLRAAFLSERLK--RQKRVLIILDDLWGKLDLAVVGIPYGEEHKGCKIILTSRFKEVCDEME 304 (1074)
Q Consensus 239 ~------~~---~---~~~~~~~~l~~~l~--~~k~~LiVlDdv~~~~~~~~~~~~~~~~~~gs~iivTTR~~~v~~~~~ 304 (1074)
. .. . ........+++.++ .++|+||||||||+.++|+.+. .||+||||||++.++..+.
T Consensus 210 ~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~-------pGSRILVTTRd~~Va~~l~ 282 (1221)
T 1vt4_I 210 DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN-------LSCKILLTTRFKQVTDFLS 282 (1221)
T ss_dssp CSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHH-------SSCCEEEECSCSHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHC-------CCEEEEEECCCHHHHHHCC
T ss_conf 721022001346799999999999999998504788799871868189998647-------9829999443737998668
Q ss_pred CCCEEECC------CCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCC--CHHHHHHHHHHH
Q ss_conf 99738589------9998989999997509999990369999999999189857999999997289--905899999997
Q 001457 305 STNYVQVE------ELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLPNAIVIIGTALRHK--PVREWNEAIKRK 376 (1074)
Q Consensus 305 ~~~~~~l~------~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l~~~--~~~~w~~~~~~l 376 (1074)
....|+++ +|+.+|+|+||.+..+.. ..++..+| |+|+||||+++|+.|+.+ +.++|...
T Consensus 283 g~~vy~LeL~d~dL~LS~eEA~eLF~~~~g~~-----~eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW~~~---- 350 (1221)
T 1vt4_I 283 AATTTHISLDHHSMTLTPDEVKSLLLKYLDCR-----PQDLPREV---LTTNPRRLSIIAESIRDGLATWDNWKHV---- 350 (1221)
T ss_dssp HHSSCEEEECSSSSCCCHHHHHHHHHHHHCCC-----TTTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHHHHHC----
T ss_pred CCEEEEECCCCCCCCCCHHHHHHHHHHHCCCC-----HHHHHHHH---HCCCHHHHHHHHHHHHCCCCCHHHHHCC----
T ss_conf 97089946865568969999999999974998-----89999999---6989999999999984889979998669----
Q ss_pred HHCCCCCCCCCHHHHHHHHHHHHCCCHHHH-HHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHCHHHHHH
Q ss_conf 307999988963889989987303783658-8999866089999865557899988550103566543665301899999
Q 001457 377 KASTPINVEGIPEEVVLCVALGYDQLETVA-KSCLQFSCLFPPYYSVSMEEFVIHGLVDRLFPQVGLLGEVGNRVHPVVL 455 (1074)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~-k~cf~~~s~fp~~~~i~~~~li~~w~~~g~i~~~~~~~~~~~~~~~~~~ 455 (1074)
. ...+..++++||+.||++. |.||+|||+||+++.|+.+.++.+|+++|. +.+..+++
T Consensus 351 ---------~-~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeGe-----------edAe~~L~ 409 (1221)
T 1vt4_I 351 ---------N-CDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIK-----------SDVMVVVN 409 (1221)
T ss_dssp ---------S-CHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSCS-----------HHHHHHHH
T ss_pred ---------C-HHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCH-----------HHHHHHHH
T ss_conf ---------8-61899999999984889999999999717799998779999987667788-----------99999999
Q ss_pred HHHHCCCCCCCCCCCCEEECHHHHHHH
Q ss_conf 998501244688874225502478999
Q 001457 456 RLISSSLLLEGDRESCFRIHDDTRKVV 482 (1074)
Q Consensus 456 ~L~~~~ll~~~~~~~~~~mHdlv~~~~ 482 (1074)
+|+++||++.....++|+|||++++++
T Consensus 410 eLvdRSLLq~d~~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 410 KLHKYSLVEKQPKESTISIPSIYLELK 436 (1221)
T ss_dssp HHHTSSSSSBCSSSSEEBCCCHHHHHH
T ss_pred HHHHHCCEEEECCCCEEEEHHHHHHHH
T ss_conf 999619889868999898609999985
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=1.00 E-value=1 Score=304.11 Aligned_cols=303 Identities=18% Similarity=0.239 Sum_probs=231.1
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHH----CCCC-CEEEEEEECCCCCHHHHHHH---HH
Q ss_conf 6821399999999997229984159999948999188999999861----3998-83999995689678999999---99
Q 001457 161 PLKSALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ----EIPF-DKVIFVRVTQTPDVKRVQDE---IA 232 (1074)
Q Consensus 161 ~~~~~~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~----~~~F-~~~~wv~v~~~~~~~~~~~~---i~ 232 (1074)
.++||+.++.++...+.......++|+|+||||+||||||++++++ ..+| +.++|++++.. +...+... ++
T Consensus 125 ~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~~~l~~l~ 203 (591)
T 1z6t_A 125 VFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLMKLQNLC 203 (591)
T ss_dssp SCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHHHHHHHHH
T ss_pred EECCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHCHHHHHHHCCCCEEEEECCCC-CHHHHHHHHHHHH
T ss_conf 140529999999999860368884699976998988999999983556888528996599977877-6688999999999
Q ss_pred HHHCCC-----CCCCHHHHHHHHHHHHHHC-CCEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHCCCC
Q ss_conf 983347-----7743599999999999870-4709999818654123220266888999980999963881577521699
Q 001457 233 RFLNTE-----LEGDVEVLRAAFLSERLKR-QKRVLIILDDLWGKLDLAVVGIPYGEEHKGCKIILTSRFKEVCDEMEST 306 (1074)
Q Consensus 233 ~~l~~~-----~~~~~~~~~~~~l~~~l~~-~k~~LiVlDdv~~~~~~~~~~~~~~~~~~gs~iivTTR~~~v~~~~~~~ 306 (1074)
..++.. ............+...+.. .+++||||||+|+...+..+ ..|++||||||+..++..+..
T Consensus 204 ~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l-------~~~~~ilvTsR~~~~~~~~~~- 275 (591)
T 1z6t_A 204 TRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF-------DSQCQILLTTRDKSVTDSVMG- 275 (591)
T ss_dssp HHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTT-------CSSCEEEEEESCGGGGTTCCS-
T ss_pred HHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHH-------CCCCEEEEECCCCHHHHHCCC-
T ss_conf 985035565567998899999999999706799869998589987999876-------379869998988177773489-
Q ss_pred CEEEC---CCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 73858---999989899999975099999903699999999991898579999999972899058999999973079999
Q 001457 307 NYVQV---EELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLPNAIVIIGTALRHKPVREWNEAIKRKKASTPIN 383 (1074)
Q Consensus 307 ~~~~l---~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l~~~~~~~w~~~~~~l~~~~~~~ 383 (1074)
..+++ ++|+.+|+++||...++. ......+.+.+|+++|+|+||||+++|+.++.+ ..+|...++.+.......
T Consensus 276 ~~~~v~~l~~L~~~ea~~L~~~~~~~--~~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~-~~~w~~~l~~l~~~~~~~ 352 (591)
T 1z6t_A 276 PKYVVPVESSLGKEKGLEILSLFVNM--KKADLPEQAHSIIKECKGSPLVVSLIGALLRDF-PNRWEYYLKQLQNKQFKR 352 (591)
T ss_dssp CEEEEECCSSCCHHHHHHHHHHHHTS--CGGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHS-TTCHHHHHHHHHSCCCCC
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHCC--CCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHH
T ss_conf 82686158899989999999987189--831045999999999589837999999998448-435999999998868987
Q ss_pred CC----CCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHCHHHHHHHHHH
Q ss_conf 88----96388998998730378365889998660899998655578999885501035665436653018999999985
Q 001457 384 VE----GIPEEVVLCVALGYDQLETVAKSCLQFSCLFPPYYSVSMEEFVIHGLVDRLFPQVGLLGEVGNRVHPVVLRLIS 459 (1074)
Q Consensus 384 ~~----~~~~~~~~~l~~sy~~L~~~~k~cf~~~s~fp~~~~i~~~~li~~w~~~g~i~~~~~~~~~~~~~~~~~~~L~~ 459 (1074)
+. .....+..++..||+.|+++.|.||++||+||+++.|+.+.++.+|.+++ ..+..++++|++
T Consensus 353 ~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~~------------~~~~~~l~~L~~ 420 (591)
T 1z6t_A 353 IRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDMET------------EEVEDILQEFVN 420 (591)
T ss_dssp SSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCCH------------HHHHHHHHHHHH
T ss_pred HHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCH------------HHHHHHHHHHHH
T ss_conf 65114654378999999999868999999999745567998508999999966588------------999999999985
Q ss_pred CCCCCCCC--CCCCEEECHHHHHHHHHHHH
Q ss_conf 01244688--87422550247899999984
Q 001457 460 SSLLLEGD--RESCFRIHDDTRKVVKYIAA 487 (1074)
Q Consensus 460 ~~ll~~~~--~~~~~~mHdlv~~~~~~~~~ 487 (1074)
+||++... ...+|+||+++|++++....
T Consensus 421 ~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~~ 450 (591)
T 1z6t_A 421 KSLLFCDRNGKSFRYYLHDLQVDFLTEKNC 450 (591)
T ss_dssp TTSSEEEEETTEEEEECCHHHHHHHHHHTG
T ss_pred CCCEEEECCCCCCEEEECHHHHHHHHHHHH
T ss_conf 958688548985679976899999986535
No 5
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=1.00 E-value=1 Score=275.90 Aligned_cols=495 Identities=17% Similarity=0.115 Sum_probs=289.4
Q ss_pred CCCCCCCCCCCCCEEEECCCCCCCCCC--CCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEEECCCCCCCC-CCCCCC
Q ss_conf 789991125897479610697535899--99999952999118999899904773289731998028745777-997337
Q 001457 500 KKGWPREDLQNCEKLSLMDGNVTALPD--QPKCPRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSL-APSLPC 576 (1074)
Q Consensus 500 ~~~~~~~~~~~~~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l-~~~i~~ 576 (1074)
....|..-.++++.+++.++.+..++. ...+++|++|++++|.+..+++..|.++++|++|++++|.+..+ |..+..
T Consensus 23 l~~ip~~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~ 102 (606)
T 3vq2_A 23 LSKVPDDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSG 102 (606)
T ss_dssp CSSCCTTSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTT
T ss_pred CCCCCCCCCCCCCEEECCCCCCCEECHHHCCCCCCCCEEECCCCCCCCCCHHHHHCHHHCCEEECCCCCCCCCCHHHCCC
T ss_conf 45189888887678878889757737545557766748868877366439777306010688678798563048522078
Q ss_pred CCCCCEEECCCCCCCC--CCCCCCCCCCCEEEEECCCCC--CCCCCCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCC-
Q ss_conf 7457766536887899--700027897539982078786--56831138888788848889689876933321999769-
Q 001457 577 LEKLRSLHLENTHLND--ASLIREFGELEVLILKGSRIV--ELPNGIGTVSNLKLLDLSNNLFLQVIPPNVISKLSQLE- 651 (1074)
Q Consensus 577 l~~Lr~L~L~~~~l~~--~~~i~~l~~L~~L~L~~~~i~--~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~l~~l~~L~- 651 (1074)
+++|++|++++|.++. +..++++++|++|++++|.+. .+|..++++++|++|++++|.+.. +++..++.+.+|+
T Consensus 103 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~ 181 (606)
T 3vq2_A 103 LTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQT-ITVNDLQFLRENPQ 181 (606)
T ss_dssp CTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCE-ECTTTTHHHHHCTT
T ss_pred CCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCEECHHHHHHCCCCCEEECCCCCCEE-CCHHHHHHHHCCCC
T ss_conf 65378887037755544511348988779896878852325306867326777788766885310-57334121203420
Q ss_pred ---EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCC-CCCCCCCCCCCCCCEEEEEECCCCCC--C---
Q ss_conf ---99836776874000012577878201136767877997406865-55567689988730799985574457--8---
Q 001457 652 ---ELYVGNSFGDWEVEETANGQNARFSEVASLTRLTVLYIHVSNTK-VLSVDFDGPWTNLKRFRVCVNDDYWE--I--- 722 (1074)
Q Consensus 652 ---~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~--~--- 722 (1074)
+|+++++..... ........+|+.|++..+... ......+..++.|+.+.+..+..... .
T Consensus 182 ~l~~L~l~~n~l~~~-----------~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~ 250 (606)
T 3vq2_A 182 VNLSLDMSLNPIDFI-----------QDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIF 250 (606)
T ss_dssp CCCEEECTTCCCCEE-----------CTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCC
T ss_pred CCCEEECCCCCCCEE-----------CCCCCCCCEEEEEECCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 024300468975325-----------711056760433524678561667788860266565231411110367741026
Q ss_pred -----C-----CCCEEEECC---CHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCC
Q ss_conf -----8-----632048625---402169999998701212341367786542345536679732899805444422345
Q 001457 723 -----A-----PKRSMHLKN---LSNSIASWVKLLLEKTEYLTLTRSSNLQDIGEIDVQGFTGLMCMHLRACSMQRIFHS 789 (1074)
Q Consensus 723 -----~-----~~~~l~l~~---~~~~~~~~i~~~~~~L~~L~L~~~~~~~~~~~l~~~~l~~L~~L~L~~~~~~~~~~~ 789 (1074)
. .+..+.+.. .....|. ...+++++.|.+.++.. ..++ .+..+++|+.|.+++|.+ ..+|
T Consensus 251 ~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~-~~l~--~l~~~~~L~~L~l~~n~l-~~lp- 323 (606)
T 3vq2_A 251 EPSIMEGLCDVTIDEFRLTYTNDFSDDIVK--FHCLANVSAMSLAGVSI-KYLE--DVPKHFKWQSLSIIRCQL-KQFP- 323 (606)
T ss_dssp CGGGGTTGGGSEEEEEEECCCTTCCGGGGS--CGGGTTCSEEEEESCCC-CCCC--CCCTTCCCSEEEEESCCC-SSCC-
T ss_pred CHHHHHHHHHCCHHHEECCCCCCCCCCCCC--CCCCCCCCEEEECCCCC-HHHH--HCCCCCCCCEEECCCCCC-CCCC-
T ss_conf 817766665434745012366555543222--35488789877147660-4435--433401177897646667-6546-
Q ss_pred CCCCCCCCCEEEEEEEECCCCEEECCCCCCCCCCCCCCCCEEECCCCCCCCEEECCCCCCCCCCCCCEEEEECCCCCCCC
Q ss_conf 74311123306888420563022024663100024777440212776674042002565223253245989607996433
Q 001457 790 NFYPTVQILEELHVEYCYSLKEVFCLEDIEGEQAGLKRLRELVLVGLPKVLTIWKGNHSVVYLKTLKLMKVKDCGKLRYL 869 (1074)
Q Consensus 790 ~~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~l~~L~~L~l~~C~~L~~l 869 (1074)
. + .+++|+.|+++++...... ... .+++|+.|++.++ .++.+......+..+++|+.|++.+|. +..+
T Consensus 324 ~-~-~l~~L~~L~l~~n~~~~~~-~~~-------~l~~L~~L~ls~n-~l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~ 391 (606)
T 3vq2_A 324 T-L-DLPFLKSLTLTMNKGSISF-KKV-------ALPSLSYLDLSRN-ALSFSGCCSYSDLGTNSLRHLDLSFNG-AIIM 391 (606)
T ss_dssp C-C-CCSSCCEEEEESCSSCEEC-CCC-------CCTTCCEEECCSS-CEEEEEECCHHHHCCSCCCEEECCSCS-EEEE
T ss_pred C-C-CCCCCCEEECCCCCCCCCH-HHC-------CCCCCCEEECCCC-CCCCCCCHHHHHCCCCCCCEEECCCCC-CCCC
T ss_conf 6-7-8875564454478685310-002-------4898887977587-368775201221467755486788995-3000
Q ss_pred CCCHHHHHHCCCCCEECCCCCCCCEEECCCHHHHHHHHHHCCCCCCC------C-CCCCCCCCEEEEECCCCCCCCCCCC
Q ss_conf 56016752027871441434553233124325675221000245569------9-8765688408974455464212433
Q 001457 870 FSRTLAEGLGNLEDLSILKCDLMEEIVSVDEAEVEQGAAQERNVSSA------P-QPMFFPNLKKLLIGKCNKMKRVLSL 942 (1074)
Q Consensus 870 ~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~~~l~~~------~-~~~~~~~L~~L~L~~c~~l~~~~~~ 942 (1074)
+ ..+..+++|+.|++++|......+. . .......++.+.+... + .+..+++|+.|++.+|.--.... .
T Consensus 392 ~--~~~~~l~~L~~L~l~~n~l~~~~~~-~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~ 466 (606)
T 3vq2_A 392 S--ANFMGLEELQHLDFQHSTLKRVTEF-S-AFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTL-S 466 (606)
T ss_dssp C--CCCTTCTTCCEEECTTSEEESTTTT-T-TTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEE-C
T ss_pred H--HHCCCCCCCCEEECCCCCCCCCCCH-H-HHHCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCH-H
T ss_conf 5--5406888889658988705875376-4-56462137889896897874335553477878989898983798546-7
Q ss_pred CCCCCCCCCCEEEEEECCCCCEEECCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCC
Q ss_conf 32012357618998004674345403421000357654554351022544334333357433456998428998079987
Q 001457 943 TNAHNLKQLEELTVASCNHMERIITVSDEEKAAENKNVLPKLKILALEDLPELDSVYNGEIAALRWPSLEELKVWDCPKL 1022 (1074)
Q Consensus 943 ~~~~~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~i~~~~~~~~~~~~L~~L~i~~C~~L 1022 (1074)
..+..+++|+.|++++|. ++.++ ......+++|+.|+++++ .++.+....+. .+++|++|++++|. +
T Consensus 467 ~~~~~l~~L~~L~Ls~n~-l~~~~--------~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~--~l~~L~~L~l~~N~-l 533 (606)
T 3vq2_A 467 NVFANTTNLTFLDLSKCQ-LEQIS--------WGVFDTLHRLQLLNMSHN-NLLFLDSSHYN--QLYSLSTLDCSFNR-I 533 (606)
T ss_dssp SCCTTCTTCCEEECTTSC-CCEEC--------TTTTTTCTTCCEEECCSS-CCSCEEGGGTT--TCTTCCEEECTTSC-C
T ss_pred HHHCCCCCCCEEECCCCC-CCCCC--------HHHHCCCCCCCEEECCCC-CCCCCCHHHCC--CCCCCCEEECCCCC-C
T ss_conf 760457889989898885-77648--------656154646898989899-57874877706--88768988898983-7
Q ss_pred CCCCCCCCCCC-CCCCCCCCCH
Q ss_conf 87789998872-1000112210
Q 001457 1023 MKLPLDTRSAP-KLETFKAHSA 1043 (1074)
Q Consensus 1023 ~~lp~~~~~l~-~L~~l~~~~~ 1043 (1074)
+.+|..+..++ +|+.++++.+
T Consensus 534 ~~~p~~~~~l~~~L~~l~l~~N 555 (606)
T 3vq2_A 534 ETSKGILQHFPKSLAFFNLTNN 555 (606)
T ss_dssp CCEESCGGGSCTTCCEEECCSC
T ss_pred CCCCHHHHHHCCCCCEEECCCC
T ss_conf 6668767521021748876289
No 6
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=275.47 Aligned_cols=293 Identities=12% Similarity=0.014 Sum_probs=161.2
Q ss_pred HHCCCEEEECCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEECCCCEEECCCCCCCCCCC
Q ss_conf 70121234136778654234553667973289980544442234574311123306888420563022024663100024
Q 001457 745 LEKTEYLTLTRSSNLQDIGEIDVQGFTGLMCMHLRACSMQRIFHSNFYPTVQILEELHVEYCYSLKEVFCLEDIEGEQAG 824 (1074)
Q Consensus 745 ~~~L~~L~L~~~~~~~~~~~l~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~~~~~ 824 (1074)
+++|+.|++.++.-....+. .+..+++|+.|.+++|.+....|. .+..+++|+.|++++|......+ .....
T Consensus 417 l~~L~~L~Ls~N~l~~~~p~-~l~~l~~L~~L~L~~n~l~~~~p~-~~~~l~~L~~L~L~~N~l~~~~p------~~l~~ 488 (768)
T 3rgz_A 417 CSELVSLHLSFNYLSGTIPS-SLGSLSKLRDLKLWLNMLEGEIPQ-ELMYVKTLETLILDFNDLTGEIP------SGLSN 488 (768)
T ss_dssp CTTCCEEECCSSEEESCCCG-GGGGCTTCCEEECCSSCCCSCCCG-GGGGCTTCCEEECCSSCCCSCCC------GGGGG
T ss_pred CCCCCEEECCCCCCCCCCCH-HHHCCCCCCEEECCCCCCCCCCCH-HHCCCCCCEEEEECCCCCCCCCC------HHHHC
T ss_conf 89879898958846685467-774499889898978815471897-88287773299901995137588------78816
Q ss_pred CCCCCEEECCCCCCCCEEECCCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHCCCCCEECCCCCCCCEEECCCHHH--
Q ss_conf 777440212776674042002565223253245989607996433560167520278714414345532331243256--
Q 001457 825 LKRLRELVLVGLPKVLTIWKGNHSVVYLKTLKLMKVKDCGKLRYLFSRTLAEGLGNLEDLSILKCDLMEEIVSVDEAE-- 902 (1074)
Q Consensus 825 ~~~L~~L~L~~~~~L~~l~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~-- 902 (1074)
+++|+.|++.++.-...++ ..++.+++|+.|++.+| ++.... +..+..+++|+.|++++|.....++......
T Consensus 489 l~~L~~L~L~~N~l~~~~p---~~~~~l~~L~~L~L~~N-~l~~~~-p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~ 563 (768)
T 3rgz_A 489 CTNLNWISLSNNRLTGEIP---KWIGRLENLAILKLSNN-SFSGNI-PAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSG 563 (768)
T ss_dssp CTTCCEEECCSSCCCSCCC---GGGGGCTTCCEEECCSS-CCEEEC-CGGGGGCTTCCEEECCSSEEESBCCGGGGTTTT
T ss_pred CCCCCEEECCCCCCCCCCC---HHHHCCCCCCEEECCCC-CCCCCC-CHHHCCCCCCCEEECCCCCCCCCCCHHHHCCCC
T ss_conf 9989989753995189687---68856899998989789-433748-877708898998989888468827957860421
Q ss_pred --------------------------------------HHHHHHHC---CCCC-------CCCCCCCCCCCEEEEECCCC
Q ss_conf --------------------------------------75221000---2455-------69987656884089744554
Q 001457 903 --------------------------------------VEQGAAQE---RNVS-------SAPQPMFFPNLKKLLIGKCN 934 (1074)
Q Consensus 903 --------------------------------------~~~~~l~~---~~l~-------~~~~~~~~~~L~~L~L~~c~ 934 (1074)
.....+.. ..+. ..+....+++|+.|+++++.
T Consensus 564 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~ 643 (768)
T 3rgz_A 564 KIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNM 643 (768)
T ss_dssp CBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSC
T ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCEECCCCCHHHHCCCCCCEEECCCCC
T ss_conf 22320134542111134443222233222100135563232002321100113310046274334033566579785880
Q ss_pred CCCCCCCCCCCCCCCCCCEEEEEECCCCCEEECCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 64212433320123576189980046743454034210003576545543510225443343333574334569984289
Q 001457 935 KMKRVLSLTNAHNLKQLEELTVASCNHMERIITVSDEEKAAENKNVLPKLKILALEDLPELDSVYNGEIAALRWPSLEEL 1014 (1074)
Q Consensus 935 ~l~~~~~~~~~~~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~i~~~~~~~~~~~~L~~L 1014 (1074)
--..++. .+..++.|+.|+++++..-..+|. ..+.+++|+.|+++++.--..+|.... .+++|++|
T Consensus 644 l~g~ip~--~l~~l~~L~~L~Ls~N~l~g~ip~---------~l~~L~~L~~LdLs~N~l~g~ip~~l~---~l~~L~~L 709 (768)
T 3rgz_A 644 LSGYIPK--EIGSMPYLFILNLGHNDISGSIPD---------EVGDLRGLNILDLSSNKLDGRIPQAMS---ALTMLTEI 709 (768)
T ss_dssp CBSCCCG--GGGGCTTCCEEECCSSCCCSCCCG---------GGGGCTTCCEEECCSSCCEECCCGGGG---GCCCCSEE
T ss_pred CCCCCCH--HHHCCCCCCEEECCCCCCCCCCCH---------HHHCCCCCCEEECCCCCCCCCCCHHHH---CCCCCCEE
T ss_conf 1555877--884141578784868803887896---------784777899898978802386886775---78878978
Q ss_pred EEECCCCCCCCCCCC--CCCCCCCCCC----CCCHHHHHHCC--CCCCCCCCCCCCCCC
Q ss_conf 980799878778999--8872100011----22100214103--688852210122123
Q 001457 1015 KVWDCPKLMKLPLDT--RSAPKLETFK----AHSAWFEKLQW--NEGYSKLRLQPLLNE 1065 (1074)
Q Consensus 1015 ~i~~C~~L~~lp~~~--~~l~~L~~l~----~~~~~~~~l~~--~~~~~~~~~~~~~~~ 1065 (1074)
++++|+--..+|.+. ..++.+.-.. |... ...+.. .++|.++.|.|.+.+
T Consensus 710 ~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~-l~~C~~~~~~~~~~~~~~~~~~~ 767 (768)
T 3rgz_A 710 DLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYP-LPRCDPSNADGYAHHQRSHHHHH 767 (768)
T ss_dssp ECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTT-SCCCCSCC---------------
T ss_pred ECCCCCCCCCCCCCHHHCCCCHHHHCCCCHHCCCC-CCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 79688155608996010248977756983210887-76788876688898887656678
No 7
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=1.00 E-value=1 Score=272.80 Aligned_cols=483 Identities=15% Similarity=0.116 Sum_probs=296.9
Q ss_pred CCCCCCCCCCCCCEEEECCCCCCCCCC--CCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEEECCCCCCCC-CCCCCC
Q ss_conf 789991125897479610697535899--99999952999118999899904773289731998028745777-997337
Q 001457 500 KKGWPREDLQNCEKLSLMDGNVTALPD--QPKCPRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSL-APSLPC 576 (1074)
Q Consensus 500 ~~~~~~~~~~~~~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l-~~~i~~ 576 (1074)
....|..-.+.++.+++.++.+..++. ...+++|++|++++|.+..+.+..|.++++|++|++++|.+..+ |..+..
T Consensus 24 l~~iP~~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 103 (606)
T 3t6q_A 24 LNEIPGTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSG 103 (606)
T ss_dssp CSSCCTTSCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSS
T ss_pred CCCCCCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCEEEECCCCCCCEECHHHCCCCCCCCEEECCCCCCCCCCHHHHCC
T ss_conf 06286778986758981587347179667256766528978898355248511368433676448898565458655234
Q ss_pred CCCCCEEECCCCCCCC--CCCCCCCCCCCEEEEECCCCCCCC-CCCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCC--
Q ss_conf 7457766536887899--700027897539982078786568-31138888788848889689876933321999769--
Q 001457 577 LEKLRSLHLENTHLND--ASLIREFGELEVLILKGSRIVELP-NGIGTVSNLKLLDLSNNLFLQVIPPNVISKLSQLE-- 651 (1074)
Q Consensus 577 l~~Lr~L~L~~~~l~~--~~~i~~l~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~l~~~~~~~~~p~~~l~~l~~L~-- 651 (1074)
+++|++|++++|.++. +..++.+++|++|++++|.+..++ ..+..+++|++|++++|.+ ..+++..++.+++|+
T Consensus 104 l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~l 182 (606)
T 3t6q_A 104 PKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAI-HYLSKEDMSSLQQATNL 182 (606)
T ss_dssp CTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCC-CEECHHHHHTTTTCCSE
T ss_pred CCCCCEEECCCCCCCCCCCCHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCC-CCCCHHHHHHHCCCCEE
T ss_conf 42153765212676657810122378223898879834114765456876568777656844-55496563322156403
Q ss_pred EEECCCCCCCCCCCCCCCCC---------------------------------------CCCCCCCCCCC--CCCEEEEE
Q ss_conf 99836776874000012577---------------------------------------87820113676--78779974
Q 001457 652 ELYVGNSFGDWEVEETANGQ---------------------------------------NARFSEVASLT--RLTVLYIH 690 (1074)
Q Consensus 652 ~L~l~~~~~~~~~~~~~~~~---------------------------------------~~~~~~l~~l~--~L~~L~l~ 690 (1074)
.|++++|............. ......+..+. +|+.+++.
T Consensus 183 ~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~ 262 (606)
T 3t6q_A 183 SLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQ 262 (606)
T ss_dssp EEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECT
T ss_pred EEECCCCCCCCCCHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCHHHEECHHHCCCCCCCCCHHHHCHHHCCCEEEEEEE
T ss_conf 89667981475486673001001355677266777765133564422002011026412268667430320750599944
Q ss_pred ECCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCEEEECCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCC
Q ss_conf 06865555676899887307999855744578863204862540216999999870121234136778654234553667
Q 001457 691 VSNTKVLSVDFDGPWTNLKRFRVCVNDDYWEIAPKRSMHLKNLSNSIASWVKLLLEKTEYLTLTRSSNLQDIGEIDVQGF 770 (1074)
Q Consensus 691 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~l~~~~~~~~~~i~~~~~~L~~L~L~~~~~~~~~~~l~~~~l 770 (1074)
.+.....+...+..+++|+.|++..+.... . |.++ ..+++|+.|.+.++. +...+...+..+
T Consensus 263 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-l---------------p~~l-~~l~~L~~L~l~~n~-l~~~~~~~~~~l 324 (606)
T 3t6q_A 263 KHYFFNISSNTFHCFSGLQELDLTATHLSE-L---------------PSGL-VGLSTLKKLVLSANK-FENLCQISASNF 324 (606)
T ss_dssp TCCCSSCCTTTTTTCTTCSEEECTTSCCSC-C---------------CSSC-CSCTTCCEEECTTCC-CSBGGGGCGGGC
T ss_pred CCCCCCCCHHHHCCCCCCCEEECCCCCCCC-C---------------CHHH-CCCCCCCEEECCCCC-CCCCCHHHHHCC
T ss_conf 576585577774456678889562882677-7---------------8214-165468889771687-686760233015
Q ss_pred CCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEECCCCEEECCCCCCCCCCCCCCCCEEECCCCCCCCEEECCCCCCC
Q ss_conf 97328998054444223457431112330688842056302202466310002477744021277667404200256522
Q 001457 771 TGLMCMHLRACSMQRIFHSNFYPTVQILEELHVEYCYSLKEVFCLEDIEGEQAGLKRLRELVLVGLPKVLTIWKGNHSVV 850 (1074)
Q Consensus 771 ~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~ 850 (1074)
++|+.|.+++|......+...+..+++|+.|+++++... ..... ......+++|+.|.+.++ .+..+. ...+.
T Consensus 325 ~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~---~~~~~~l~~L~~L~l~~n-~l~~~~--~~~~~ 397 (606)
T 3t6q_A 325 PSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIE-TSDCC---NLQLRNLSHLQSLNLSYN-EPLSLK--TEAFK 397 (606)
T ss_dssp TTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCC-EEEES---TTTTTTCTTCCEEECCSC-SCEEEC--TTTTT
T ss_pred CCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCC-CCCCC---CHHCCCCCCCCEEECCCC-CCCCCC--HHHHC
T ss_conf 768988898997444346245506675898878899666-45675---221056788898989899-677578--88734
Q ss_pred CCCCCCEEEEECCCCCCCCCCCHHHHHHCCCCCEECCCCCCCCEEECCCHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEE
Q ss_conf 32532459896079964335601675202787144143455323312432567522100024556998765688408974
Q 001457 851 YLKTLKLMKVKDCGKLRYLFSRTLAEGLGNLEDLSILKCDLMEEIVSVDEAEVEQGAAQERNVSSAPQPMFFPNLKKLLI 930 (1074)
Q Consensus 851 ~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~L~~L~L 930 (1074)
.+++|+.|++.+| .+....+...+..+++|+.|++++|......+ ..+..+++|++|++
T Consensus 398 ~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--------------------~~~~~l~~L~~L~L 456 (606)
T 3t6q_A 398 ECPQLELLDLAFT-RLKVKDAQSPFQNLHLLKVLNLSHSLLDISSE--------------------QLFDGLPALQHLNL 456 (606)
T ss_dssp TCTTCSEEECTTC-CEECCTTCCTTTTCTTCCEEECTTCCCBTTCT--------------------TTTTTCTTCCEEEC
T ss_pred CCCCCCEEECCCC-CCCCCCCCHHHHCCCCCCEEECCCCCCCCCCH--------------------HHHHCCCCCCEEEC
T ss_conf 7745776878888-67775652124176558889898985577687--------------------78737887888989
Q ss_pred CCCCCCCCC-CCCCCCCCCCCCCEEEEEECCCCCEEECCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 455464212-4333201235761899800467434540342100035765455435102254433433335743345699
Q 001457 931 GKCNKMKRV-LSLTNAHNLKQLEELTVASCNHMERIITVSDEEKAAENKNVLPKLKILALEDLPELDSVYNGEIAALRWP 1009 (1074)
Q Consensus 931 ~~c~~l~~~-~~~~~~~~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~i~~~~~~~~~~~ 1009 (1074)
++|.--... .....+..+++|+.|++++|. ++.++. .....+++|+.|+++++ .++.+....+. .++
T Consensus 457 ~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~--------~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~--~l~ 524 (606)
T 3t6q_A 457 QGNHFPKGNIQKTNSLQTLGRLEILVLSFCD-LSSIDQ--------HAFTSLKMMNHVDLSHN-RLTSSSIEALS--HLK 524 (606)
T ss_dssp TTCBCGGGEECSSCGGGGCTTCCEEECTTSC-CCEECT--------TTTTTCTTCCEEECCSS-CCCGGGGGGGT--TCC
T ss_pred CCCCCCCCCCCCCHHHCCCCCCCEEECCCCC-CCCCCH--------HHHCCCCCCCEEECCCC-CCCCCCHHHHC--CCC
T ss_conf 8998885434543124048876688799996-670686--------46326567888989898-06868966847--566
Q ss_pred CCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 842899807998787789998872100011221
Q 001457 1010 SLEELKVWDCPKLMKLPLDTRSAPKLETFKAHS 1042 (1074)
Q Consensus 1010 ~L~~L~i~~C~~L~~lp~~~~~l~~L~~l~~~~ 1042 (1074)
.| .|++.+|.--...|..+..+++|+.++++.
T Consensus 525 ~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 556 (606)
T 3t6q_A 525 GI-YLNLASNHISIILPSLLPILSQQRTINLRQ 556 (606)
T ss_dssp SC-EEECCSSCCCCCCGGGHHHHHTSSEEECTT
T ss_pred CC-EEECCCCCCCCCCHHHCCCCCCCCEEECCC
T ss_conf 51-898768941426876625677878896779
No 8
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=272.76 Aligned_cols=481 Identities=17% Similarity=0.109 Sum_probs=212.1
Q ss_pred CCCCCCEEECCCCCCCCCCHHH---HHCCCCCCEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCC-CCCCCCCCCCCE
Q ss_conf 9999529991189998999047---732897319980287457779973377457766536887899-700027897539
Q 001457 529 KCPRLTTLFLQNNPFADIPNAF---FEHTREIKNLDLSSTNISSLAPSLPCLEKLRSLHLENTHLND-ASLIREFGELEV 604 (1074)
Q Consensus 529 ~~~~L~~L~l~~~~~~~~~~~~---~~~l~~L~~L~L~~~~i~~l~~~i~~l~~Lr~L~L~~~~l~~-~~~i~~l~~L~~ 604 (1074)
.+++|++|++++|.+....+.. +.++++|++|++++|.+....+ +..+++|++|++++|.++. ++.++++++|++
T Consensus 149 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~ 227 (768)
T 3rgz_A 149 KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD-VSRCVNLEFLDVSSNNFSTGIPFLGDCSALQH 227 (768)
T ss_dssp CCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB-CTTCTTCCEEECCSSCCCSCCCBCTTCCSCCE
T ss_pred CCCCCCEEECCCCCCCCCCCHHHHHHCCCCCCCEEECCCCCCCCCCC-CCCCCCCCEEECCCCCCCCCCCCCCCCCCCCE
T ss_conf 38899989897983588587155664358988989897880346578-45478689898928827887711126999998
Q ss_pred EEEECCCCC-CCCCCCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCC-CC
Q ss_conf 982078786-5683113888878884888968987693332199976999836776874000012577878201136-76
Q 001457 605 LILKGSRIV-ELPNGIGTVSNLKLLDLSNNLFLQVIPPNVISKLSQLEELYVGNSFGDWEVEETANGQNARFSEVAS-LT 682 (1074)
Q Consensus 605 L~L~~~~i~-~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~-l~ 682 (1074)
|++++|.+. .+|..+..+++|++|++++|...+.+|. . .+++|++|++.+|... ......+.. ++
T Consensus 228 L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~--~-~l~~L~~L~L~~n~l~----------~~ip~~~~~~~~ 294 (768)
T 3rgz_A 228 LDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP--L-PLKSLQYLSLAENKFT----------GEIPDFLSGACD 294 (768)
T ss_dssp EECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCC--C-CCTTCCEEECCSSEEE----------ESCCCCSCTTCT
T ss_pred EECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCC--C-CCCCCCEEECCCCCCC----------CCCCHHHHHHCC
T ss_conf 97948858781657774488889898988866571672--4-3687898979178557----------725888884468
Q ss_pred CCCEEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCC--------CCCCCCCEEEECCCH--HHHHHHHHHHHHCCCEEE
Q ss_conf 7877997406865555676899887307999855744--------578863204862540--216999999870121234
Q 001457 683 RLTVLYIHVSNTKVLSVDFDGPWTNLKRFRVCVNDDY--------WEIAPKRSMHLKNLS--NSIASWVKLLLEKTEYLT 752 (1074)
Q Consensus 683 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~--------~~~~~~~~l~l~~~~--~~~~~~i~~~~~~L~~L~ 752 (1074)
+|+.|++..+.........+..+++|+.|++..|... ...+.++.+.+.++. ...|.++....++|+.|+
T Consensus 295 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~ 374 (768)
T 3rgz_A 295 TLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLD 374 (768)
T ss_dssp TCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEE
T ss_pred CCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHHHHCCCCEEE
T ss_conf 68899896896778423677558776677897885257379788724888878848478437623098986322771998
Q ss_pred ECCCCCCCCC-CCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEECCCCEEECCCCCCCCCCCCCCCCEE
Q ss_conf 1367786542-345536679732899805444422345743111233068884205630220246631000247774402
Q 001457 753 LTRSSNLQDI-GEIDVQGFTGLMCMHLRACSMQRIFHSNFYPTVQILEELHVEYCYSLKEVFCLEDIEGEQAGLKRLREL 831 (1074)
Q Consensus 753 L~~~~~~~~~-~~l~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~~~L~~L 831 (1074)
+.++...... +.+....+++|+.|++++|.+....|. .+..+++|+.|++++|......+ .....+++|+.|
T Consensus 375 Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~Ls~N~l~~~~p------~~l~~l~~L~~L 447 (768)
T 3rgz_A 375 LSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPP-TLSNCSELVSLHLSFNYLSGTIP------SSLGSLSKLRDL 447 (768)
T ss_dssp CCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCG-GGGGCTTCCEEECCSSEEESCCC------GGGGGCTTCCEE
T ss_pred CCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCCH-HHHCCCCCCEEECCCCCCCCCCC------HHHHCCCCCCEE
T ss_conf 62787478767666533247761898977846542487-77568987989895884668546------777449988989
Q ss_pred ECCCCCCCCEEECCCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHCCCCCEECCCCCCCCEEECCCHHHHHHHHHHCC
Q ss_conf 12776674042002565223253245989607996433560167520278714414345532331243256752210002
Q 001457 832 VLVGLPKVLTIWKGNHSVVYLKTLKLMKVKDCGKLRYLFSRTLAEGLGNLEDLSILKCDLMEEIVSVDEAEVEQGAAQER 911 (1074)
Q Consensus 832 ~L~~~~~L~~l~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~~ 911 (1074)
.+.++.--..++ ..+..+++|+.|++.+| ++.... +..+..+++|+.|++++|.....++.... ....++.+
T Consensus 448 ~L~~n~l~~~~p---~~~~~l~~L~~L~L~~N-~l~~~~-p~~l~~l~~L~~L~L~~N~l~~~~p~~~~---~l~~L~~L 519 (768)
T 3rgz_A 448 KLWLNMLEGEIP---QELMYVKTLETLILDFN-DLTGEI-PSGLSNCTNLNWISLSNNRLTGEIPKWIG---RLENLAIL 519 (768)
T ss_dssp ECCSSCCCSCCC---GGGGGCTTCCEEECCSS-CCCSCC-CGGGGGCTTCCEEECCSSCCCSCCCGGGG---GCTTCCEE
T ss_pred ECCCCCCCCCCC---HHHCCCCCCEEEEECCC-CCCCCC-CHHHHCCCCCCEEECCCCCCCCCCCHHHH---CCCCCCEE
T ss_conf 897881547189---78828777329990199-513758-87881699899897539951896876885---68999989
Q ss_pred CCCC------CC-CCCCCCCCEEEEECCCCCCCCCCCC------------------------------------------
Q ss_conf 4556------99-8765688408974455464212433------------------------------------------
Q 001457 912 NVSS------AP-QPMFFPNLKKLLIGKCNKMKRVLSL------------------------------------------ 942 (1074)
Q Consensus 912 ~l~~------~~-~~~~~~~L~~L~L~~c~~l~~~~~~------------------------------------------ 942 (1074)
.+.. +| .+..+++|+.|++.+|+-...++..
T Consensus 520 ~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 599 (768)
T 3rgz_A 520 KLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGI 599 (768)
T ss_dssp ECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTC
T ss_pred ECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 89789433748877708898998989888468827957860421223201345421111344432222332221001355
Q ss_pred --------------------------CCCCCCCCCCEEEEEECCCCCEEECCCCHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf --------------------------320123576189980046743454034210003576545543510225443343
Q 001457 943 --------------------------TNAHNLKQLEELTVASCNHMERIITVSDEEKAAENKNVLPKLKILALEDLPELD 996 (1074)
Q Consensus 943 --------------------------~~~~~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~ 996 (1074)
..+..+++|+.|+++++..-..+| ...+.++.|+.|+++++.--.
T Consensus 600 ~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip---------~~l~~l~~L~~L~Ls~N~l~g 670 (768)
T 3rgz_A 600 RSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIP---------KEIGSMPYLFILNLGHNDISG 670 (768)
T ss_dssp CGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCC---------GGGGGCTTCCEEECCSSCCCS
T ss_pred CCHHHHCCCCCCCCCCCCCEECCCCCHHHHCCCCCCEEECCCCCCCCCCC---------HHHHCCCCCCEEECCCCCCCC
T ss_conf 63232002321100113310046274334033566579785880155587---------788414157878486880388
Q ss_pred CCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCC
Q ss_conf 333574334569984289980799878778999887210001122100214103
Q 001457 997 SVYNGEIAALRWPSLEELKVWDCPKLMKLPLDTRSAPKLETFKAHSAWFEKLQW 1050 (1074)
Q Consensus 997 ~i~~~~~~~~~~~~L~~L~i~~C~~L~~lp~~~~~l~~L~~l~~~~~~~~~l~~ 1050 (1074)
.+|.... .+++|+.|+++++.--..+|..+..+++|+.++++.+-.....+
T Consensus 671 ~ip~~l~---~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP 721 (768)
T 3rgz_A 671 SIPDEVG---DLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 721 (768)
T ss_dssp CCCGGGG---GCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECC
T ss_pred CCCHHHH---CCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCC
T ss_conf 7896784---77789989897880238688677578878978796881556089
No 9
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=1.00 E-value=1 Score=268.13 Aligned_cols=488 Identities=16% Similarity=0.141 Sum_probs=321.1
Q ss_pred CEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEEECCCCCCCCC-CCCCCCCCCCEEECCCCCC
Q ss_conf 479610697535899999999529991189998999047732897319980287457779-9733774577665368878
Q 001457 512 EKLSLMDGNVTALPDQPKCPRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSLA-PSLPCLEKLRSLHLENTHL 590 (1074)
Q Consensus 512 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~-~~i~~l~~Lr~L~L~~~~l 590 (1074)
+.+...+..+..+|.. -.++++.|++++|.+..+++..|.++++|++|++++|.+..++ ..+..+++|++|++++|.+
T Consensus 14 ~~~~c~~~~l~~ip~~-~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l 92 (606)
T 3vq2_A 14 ITYQCMDQKLSKVPDD-IPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPI 92 (606)
T ss_dssp TEEECTTSCCSSCCTT-SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred CCEECCCCCCCCCCCC-CCCCCCEEECCCCCCCEECHHHCCCCCCCCEEECCCCCCCCCCHHHHHCHHHCCEEECCCCCC
T ss_conf 7057468884518988-888767887888975773754555776674886887736643977730601068867879856
Q ss_pred CC--CCCCCCCCCCCEEEEECCCCCCCC-CCCCCCCCCCEEECCCCCCCC-CCCHHHHCCCCCCCEEECCCCCCCCCCCC
Q ss_conf 99--700027897539982078786568-311388887888488896898-76933321999769998367768740000
Q 001457 591 ND--ASLIREFGELEVLILKGSRIVELP-NGIGTVSNLKLLDLSNNLFLQ-VIPPNVISKLSQLEELYVGNSFGDWEVEE 666 (1074)
Q Consensus 591 ~~--~~~i~~l~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~l~~~~~~~-~~p~~~l~~l~~L~~L~l~~~~~~~~~~~ 666 (1074)
+. |..++++++|++|++++|.+..+| ..++.+++|++|++++|.+.. .+|.. ++++++|++|++++|....
T Consensus 93 ~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~-~~~l~~L~~L~Ls~n~l~~---- 167 (606)
T 3vq2_A 93 QSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAY-FSNLTNLVHVDLSYNYIQT---- 167 (606)
T ss_dssp CCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGG-GGTCTTCCEEECCSSCCCE----
T ss_pred CCCCHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCEECHHH-HHHCCCCCEEECCCCCCEE----
T ss_conf 30485220786537888703775554451134898877989687885232530686-7326777788766885310----
Q ss_pred CCCCCCCCCCCCCCCCC-CCEEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCC--------CCCCCEEEECC--CHH
Q ss_conf 12577878201136767-87799740686555567689988730799985574457--------88632048625--402
Q 001457 667 TANGQNARFSEVASLTR-LTVLYIHVSNTKVLSVDFDGPWTNLKRFRVCVNDDYWE--------IAPKRSMHLKN--LSN 735 (1074)
Q Consensus 667 ~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--------~~~~~~l~l~~--~~~ 735 (1074)
.....+..+.+++. +..+++..+.....+...+... +|+.|++..+..... ...++.+.+.. ...
T Consensus 168 ---~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~ 243 (606)
T 3vq2_A 168 ---ITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKD 243 (606)
T ss_dssp ---ECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTT
T ss_pred ---CCHHHHHHHHCCCCCCCEEECCCCCCCEECCCCCCCC-EEEEEECCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCC
T ss_conf ---5733412120342002430046897532571105676-043352467856166778886026656523141111036
Q ss_pred -----HH-HHHHHH-HHHCCCEEEECCCCCCCCC-CCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEC
Q ss_conf -----16-999999-8701212341367786542-345536679732899805444422345743111233068884205
Q 001457 736 -----SI-ASWVKL-LLEKTEYLTLTRSSNLQDI-GEIDVQGFTGLMCMHLRACSMQRIFHSNFYPTVQILEELHVEYCY 807 (1074)
Q Consensus 736 -----~~-~~~i~~-~~~~L~~L~L~~~~~~~~~-~~l~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 807 (1074)
.. +.+... ..-+++.+.+.....+... +. +..+++|+.|.+.++.+... + .+..+++|+.|++++|.
T Consensus 244 ~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~l-~--~l~~~~~L~~L~l~~n~ 318 (606)
T 3vq2_A 244 ERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK--FHCLANVSAMSLAGVSIKYL-E--DVPKHFKWQSLSIIRCQ 318 (606)
T ss_dssp SCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS--CGGGTTCSEEEEESCCCCCC-C--CCCTTCCCSEEEEESCC
T ss_pred CCCCCCCCHHHHHHHHHCCHHHEECCCCCCCCCCCCC--CCCCCCCCEEEECCCCCHHH-H--HCCCCCCCCEEECCCCC
T ss_conf 7741026817766665434745012366555543222--35488789877147660443-5--43340117789764666
Q ss_pred CCCEEECCCCCCCCCCCCCCCCEEECCCCCCCCEEECCCCCCCCCCCCCEEEEECCCCCCCCC-CCHHHHHHCCCCCEEC
Q ss_conf 630220246631000247774402127766740420025652232532459896079964335-6016752027871441
Q 001457 808 SLKEVFCLEDIEGEQAGLKRLRELVLVGLPKVLTIWKGNHSVVYLKTLKLMKVKDCGKLRYLF-SRTLAEGLGNLEDLSI 886 (1074)
Q Consensus 808 ~l~~~~~~~~l~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~l~~L~~L~l~~C~~L~~l~-~~~~~~~l~~L~~L~l 886 (1074)
. ..++.. .+++|+.|.+.++..+.. ..+..+++|+.|++++| .+.... .+..+..+++|+.|++
T Consensus 319 l-~~lp~~--------~l~~L~~L~l~~n~~~~~-----~~~~~l~~L~~L~ls~n-~l~~~~~~~~~~~~~~~L~~L~L 383 (606)
T 3vq2_A 319 L-KQFPTL--------DLPFLKSLTLTMNKGSIS-----FKKVALPSLSYLDLSRN-ALSFSGCCSYSDLGTNSLRHLDL 383 (606)
T ss_dssp C-SSCCCC--------CCSSCCEEEEESCSSCEE-----CCCCCCTTCCEEECCSS-CEEEEEECCHHHHCCSCCCEEEC
T ss_pred C-CCCCCC--------CCCCCCEEECCCCCCCCC-----HHHCCCCCCCEEECCCC-CCCCCCCHHHHHCCCCCCCEEEC
T ss_conf 7-654667--------887556445447868531-----00024898887977587-36877520122146775548678
Q ss_pred CCCCCCCEEECCCHHHHHHHHHHCCCCCC-----C---CCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf 43455323312432567522100024556-----9---987656884089744554642124333201235761899800
Q 001457 887 LKCDLMEEIVSVDEAEVEQGAAQERNVSS-----A---PQPMFFPNLKKLLIGKCNKMKRVLSLTNAHNLKQLEELTVAS 958 (1074)
Q Consensus 887 ~~c~~l~~~~~~~~~~~~~~~l~~~~l~~-----~---~~~~~~~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~i~~ 958 (1074)
++|. +..++.. ......++.+.+.. . .....+++|+.|++++|......+ ..+..+++|+.|++++
T Consensus 384 ~~n~-l~~~~~~---~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~l~~ 457 (606)
T 3vq2_A 384 SFNG-AIIMSAN---FMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFD--GIFLGLTSLNTLKMAG 457 (606)
T ss_dssp CSCS-EEEECCC---CTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCT--TTTTTCTTCCEEECTT
T ss_pred CCCC-CCCCHHH---CCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCH--HHHCCCCCCCEEECCC
T ss_conf 8995-3000554---06888889658988705875376456462137889896897874335--5534778789898989
Q ss_pred CCCCCEEECCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf 46743454034210003576545543510225443343333574334569984289980799878778999887210001
Q 001457 959 CNHMERIITVSDEEKAAENKNVLPKLKILALEDLPELDSVYNGEIAALRWPSLEELKVWDCPKLMKLPLDTRSAPKLETF 1038 (1074)
Q Consensus 959 C~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~i~~~~~~~~~~~~L~~L~i~~C~~L~~lp~~~~~l~~L~~l 1038 (1074)
|.....++ ......+++|+.|++++| .++.++...+. .+++|++|++++|.-....|..+..+++|+.+
T Consensus 458 n~l~~~~~--------~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 526 (606)
T 3vq2_A 458 NSFKDNTL--------SNVFANTTNLTFLDLSKC-QLEQISWGVFD--TLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTL 526 (606)
T ss_dssp CEEGGGEE--------CSCCTTCTTCCEEECTTS-CCCEECTTTTT--TCTTCCEEECCSSCCSCEEGGGTTTCTTCCEE
T ss_pred CCCCCCCH--------HHHHCCCCCCCEEECCCC-CCCCCCHHHHC--CCCCCCEEECCCCCCCCCCHHHCCCCCCCCEE
T ss_conf 83798546--------776045788998989888-57764865615--46468989898995787487770688768988
Q ss_pred CCCCHHHH
Q ss_conf 12210021
Q 001457 1039 KAHSAWFE 1046 (1074)
Q Consensus 1039 ~~~~~~~~ 1046 (1074)
+++.+.+.
T Consensus 527 ~l~~N~l~ 534 (606)
T 3vq2_A 527 DCSFNRIE 534 (606)
T ss_dssp ECTTSCCC
T ss_pred ECCCCCCC
T ss_conf 89898376
No 10
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=1.00 E-value=1 Score=261.99 Aligned_cols=446 Identities=17% Similarity=0.148 Sum_probs=249.4
Q ss_pred CCCCCCCCCCCCCEEEECCCCCCCCCC--CCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEEECCCCCCCCCC-CCCC
Q ss_conf 789991125897479610697535899--9999995299911899989990477328973199802874577799-7337
Q 001457 500 KKGWPREDLQNCEKLSLMDGNVTALPD--QPKCPRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSLAP-SLPC 576 (1074)
Q Consensus 500 ~~~~~~~~~~~~~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~-~i~~ 576 (1074)
...+|..-.++++++++.++.+..++. ...+++|++|++++|.+..+++..|.++++|++|++++|.+..+|+ .+..
T Consensus 16 L~~ip~~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~ 95 (680)
T 1ziw_A 16 LTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAF 95 (680)
T ss_dssp CSSCCSCSCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred CCCCCCCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHCC
T ss_conf 05264124888768889899778759788717876758878899648569778740667688889998567568545303
Q ss_pred CCCCCEEECCCCCCCC--CCCCCCCCCCCEEEEECCCCCCC-CCCCCCCCCCCEEECCCCCCCCCCCHHHHC--CCCCCC
Q ss_conf 7457766536887899--70002789753998207878656-831138888788848889689876933321--999769
Q 001457 577 LEKLRSLHLENTHLND--ASLIREFGELEVLILKGSRIVEL-PNGIGTVSNLKLLDLSNNLFLQVIPPNVIS--KLSQLE 651 (1074)
Q Consensus 577 l~~Lr~L~L~~~~l~~--~~~i~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~l~~~~~~~~~p~~~l~--~l~~L~ 651 (1074)
+++|++|++++|.++. +..++++++|++|++++|.+... |..++.+++|++|++++|.+ ..+++..+. .+++|+
T Consensus 96 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~~~~~~L~ 174 (680)
T 1ziw_A 96 CTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKI-QALKSEELDIFANSSLK 174 (680)
T ss_dssp CTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCC-CCBCHHHHGGGTTCEES
T ss_pred CCCCCEEECCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCC-CCCCHHHHHCCCCCCCC
T ss_conf 88889898989966853966741567888898989952466721112455677797458843-65297886244666321
Q ss_pred EEECCCCCCCCCCCCCC-CCCC--------CCC-----CCC---CCCCCCCEEEEEECCCCCCCCCCCCCCC--CCCEEE
Q ss_conf 99836776874000012-5778--------782-----011---3676787799740686555567689988--730799
Q 001457 652 ELYVGNSFGDWEVEETA-NGQN--------ARF-----SEV---ASLTRLTVLYIHVSNTKVLSVDFDGPWT--NLKRFR 712 (1074)
Q Consensus 652 ~L~l~~~~~~~~~~~~~-~~~~--------~~~-----~~l---~~l~~L~~L~l~~~~~~~~~~~~~~~~~--~L~~L~ 712 (1074)
+|++++|.......... .... ..+ ..+ -..++|+.|.+..+.........+..++ +|+.|+
T Consensus 175 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~ 254 (680)
T 1ziw_A 175 KLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLD 254 (680)
T ss_dssp EEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEE
T ss_pred EEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEECCCCCCCCCCHHHHHCCCCCCCCEEE
T ss_conf 79888982565581555322344554305664680567778777531510088745774364686675146767788877
Q ss_pred EEECCCCC-------CCCCCCEEEECCCH--HHHHHHHHHHHHCCCEEEECCCCC--------CCCCCCCCCCCCCCCCE
Q ss_conf 98557445-------78863204862540--216999999870121234136778--------65423455366797328
Q 001457 713 VCVNDDYW-------EIAPKRSMHLKNLS--NSIASWVKLLLEKTEYLTLTRSSN--------LQDIGEIDVQGFTGLMC 775 (1074)
Q Consensus 713 l~~~~~~~-------~~~~~~~l~l~~~~--~~~~~~i~~~~~~L~~L~L~~~~~--------~~~~~~l~~~~l~~L~~ 775 (1074)
+..+.... ..+.++.+.+.++. ...+.++ ..+++|+.|.+.++.. +..+....+..+++|+.
T Consensus 255 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~ 333 (680)
T 1ziw_A 255 LSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSL-HGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEH 333 (680)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTT-TTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCE
T ss_pred CCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHH-CCCCCCCEEECCCHHHHCCCCCCCCCCCCHHHCCCCCCCCE
T ss_conf 87887675680211674105685577885676586562-67888557736331321333335545438656246777888
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCEEEEEEEECC-CCEEECCCCCCCCCCCCCCCCEEECCCCCCCCEEECCCCCCCCCCC
Q ss_conf 998054444223457431112330688842056-3022024663100024777440212776674042002565223253
Q 001457 776 MHLRACSMQRIFHSNFYPTVQILEELHVEYCYS-LKEVFCLEDIEGEQAGLKRLRELVLVGLPKVLTIWKGNHSVVYLKT 854 (1074)
Q Consensus 776 L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~-l~~~~~~~~l~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~l~~ 854 (1074)
|++++|.+... +...+..+++|+.|++++|.. ...+... . ......++|+.|.+.++ .+..+. ...+..+++
T Consensus 334 L~l~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~-~--f~~~~~~~L~~L~L~~n-~l~~~~--~~~~~~l~~ 406 (680)
T 1ziw_A 334 LNMEDNDIPGI-KSNMFTGLINLKYLSLSNSFTSLRTLTNE-T--FVSLAHSPLHILNLTKN-KISKIE--SDAFSWLGH 406 (680)
T ss_dssp EECCSCCBCCC-CTTTTTTCTTCCEEECTTCBSCCCEECTT-T--TGGGTTSCCCEEECTTS-CCCEEC--TTTTTTCTT
T ss_pred EECCCCCCCCC-CHHHHCCCCCCCEEECCCCCHHHHHCCHH-H--HCCCCCCCCCEEECCCC-CCCEEC--HHHHHCCCC
T ss_conf 87989826878-85574065687289887980144323532-2--02455686766889999-777677--544207788
Q ss_pred CCEEEEECCCCCCCCCCCHHHHHHCCCCCEECCCCCCCCEEECCCHHHHHHHHHHCCCCCC--------CC-CCCCCCCC
Q ss_conf 2459896079964335601675202787144143455323312432567522100024556--------99-87656884
Q 001457 855 LKLMKVKDCGKLRYLFSRTLAEGLGNLEDLSILKCDLMEEIVSVDEAEVEQGAAQERNVSS--------AP-QPMFFPNL 925 (1074)
Q Consensus 855 L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~~~l~~--------~~-~~~~~~~L 925 (1074)
|+.|++.++ .+....+...+.++++|+.|++++|......... ....+.++.+.+.. .+ ....+++|
T Consensus 407 L~~L~L~~N-~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~---~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L 482 (680)
T 1ziw_A 407 LEVLDLGLN-EIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNS---FALVPSLQRLMLRRVALKNVDSSPSPFQPLRNL 482 (680)
T ss_dssp CCEEECCSS-CCEEECCSGGGTTCTTCCEEECCSCSEEECCTTT---TTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTC
T ss_pred CCEEECCCC-CCCCCCCCCCCCCCCCCCEEECCCCCCCEECHHH---HHCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCC
T ss_conf 888867787-5754357553257546127844899754227645---500754310110146442256677645557878
Q ss_pred EEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEECC
Q ss_conf 08974455464212433320123576189980046
Q 001457 926 KKLLIGKCNKMKRVLSLTNAHNLKQLEELTVASCN 960 (1074)
Q Consensus 926 ~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~i~~C~ 960 (1074)
+.|++++|. ++.+++ ..+..+++|+.|+++++.
T Consensus 483 ~~L~Ls~N~-l~~i~~-~~~~~l~~L~~L~Ls~N~ 515 (680)
T 1ziw_A 483 TILDLSNNN-IANIND-DMLEGLEKLEILDLQHNN 515 (680)
T ss_dssp CEEECCSSC-CCCCCT-TTTTTCTTCCEEECCSSC
T ss_pred CEEECCCCC-CCCCCH-HHHCCCCCCCEEECCCCC
T ss_conf 999899998-776794-463455346888588997
Done!