BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001458
(1074 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 55.1 bits (131), Expect = 2e-07, Method: Composition-based stats.
Identities = 55/211 (26%), Positives = 91/211 (43%), Gaps = 22/211 (10%)
Query: 607 FPEIVRSMKDLSELFLDGTSIKEVPSSIEXXXXXXXXXXSDCKNLVR-LPSSIIALKSLK 665
FP+ + L +D + E+P + + + +N +R LP+SI +L L+
Sbjct: 96 FPDQAFRLSHLQHXTIDAAGLXELPDTXQQFAGLETLTLA--RNPLRALPASIASLNRLR 153
Query: 666 TLNLSGCFKLENVPETLGQIES---------LEELDISGTAV---PHSTSWYSYIPINLM 713
L++ C +L +PE L ++ L+ L + T + P S + + +
Sbjct: 154 ELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKI 213
Query: 714 RKSVALKL-PSLSGLCSLRKLNLTDCNLMEGALPSDIGNLCSLKELYLSKNS-FVSLPTS 771
R S L P++ L L +L+L C + P G LK L L S ++LP
Sbjct: 214 RNSPLSALGPAIHHLPKLEELDLRGCTALRN-YPPIFGGRAPLKRLILKDCSNLLTLPLD 272
Query: 772 ITHLSKLLNIELEDCKRLQSLP----QLPPN 798
I L++L ++L C L LP QLP N
Sbjct: 273 IHRLTQLEKLDLRGCVNLSRLPSLIAQLPAN 303
Score = 48.9 bits (115), Expect = 2e-05, Method: Composition-based stats.
Identities = 57/180 (31%), Positives = 80/180 (44%), Gaps = 19/180 (10%)
Query: 358 SAKAFSKMTNLRLLKICNLQLPNGLEYLSNRLRLLGWRGYP-LKFLPSNL-QMDKTIE-- 413
+ + F+ + L L + LP + L NRLR L R P L LP L D + E
Sbjct: 122 TXQQFAGLETLTLARNPLRALPASIASL-NRLRELSIRACPELTELPEPLASTDASGEHQ 180
Query: 414 -------IYMCYSRIGELWKGIKHLDKLKVMILSHSENLIRMPDFTGAPNLEKLILEGCT 466
+ + ++ I L I +L LK + + +S P P LE+L L GCT
Sbjct: 181 GLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCT 240
Query: 467 RLYEIHPSLLLHNKLIILNMKDCTSLITLPGKI-LMKSLEKL------NLKSLPTTISGL 519
L P L L +KDC++L+TLP I + LEKL NL LP+ I+ L
Sbjct: 241 ALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQL 300
>pdb|2BNH|A Chain A, Porcine Ribonuclease Inhibitor
pdb|1DFJ|I Chain I, Ribonuclease Inhibitor Complexed With Ribonuclease A
Length = 457
Score = 33.1 bits (74), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 28/41 (68%), Gaps = 3/41 (7%)
Query: 728 CSLRKLNLTDCNLME---GALPSDIGNLCSLKELYLSKNSF 765
C ++KL+L +C+L E G LPS + +L +L+EL+LS N
Sbjct: 81 CKIQKLSLQNCSLTEAGCGVLPSTLRSLPTLRELHLSDNPL 121
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 53/104 (50%), Gaps = 13/104 (12%)
Query: 682 LGQIESLEELDISGTAVPHSTSWYSYIPINLMRKSVALKLPSLSGLC--SLRKLNLTDCN 739
LG E +++ DIS AV S INL +K + S + C L++L+LT +
Sbjct: 232 LGTFEDMDDEDIS-PAVFEGLCEMSVESINL-QKHYFFNISSNTFHCFSGLQELDLTATH 289
Query: 740 LMEGALPSDIGNLCSLKELYLSKNSFVSLPT-------SITHLS 776
L E LPS + L +LK+L LS N F +L S+THLS
Sbjct: 290 LSE--LPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLS 331
>pdb|1W5S|A Chain A, Structure Of The Aeropyrum Pernix Orc2 Protein (Adp
Form)
pdb|1W5S|B Chain B, Structure Of The Aeropyrum Pernix Orc2 Protein (Adp
Form)
pdb|1W5T|A Chain A, Structure Of The Aeropyrum Pernix Orc2 Protein
(Adpnp-Adp Complexes)
pdb|1W5T|B Chain B, Structure Of The Aeropyrum Pernix Orc2 Protein
(Adpnp-Adp Complexes)
pdb|1W5T|C Chain C, Structure Of The Aeropyrum Pernix Orc2 Protein
(Adpnp-Adp Complexes)
Length = 412
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 9 RFLMDSGSSDVRMI-GICGMGGLGKTTIARVVYDLISHEFEASGF 52
R L +G SDV MI G G G+GKTT+A+ +S G
Sbjct: 41 RLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGL 85
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 30.8 bits (68), Expect = 4.1, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Query: 746 PSDIGNLCSLKELYLSKNSFVSLPTSI-THLSKLLNIELEDCKRLQSLPQ 794
P +L +L++LY + N ++PT + L++L ++L D L+S+P+
Sbjct: 50 PGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND-NHLKSIPR 98
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 30.4 bits (67), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 68/149 (45%), Gaps = 26/149 (17%)
Query: 648 CKNLVRLPSSIIALKSLKTLNLSGCFKLENVPETLGQIESLEELDIS-----GTAVPHST 702
C L RL + I+ LK FK+ + + + SLE LD+S A +
Sbjct: 373 CSTLKRLQTLILQRNGLKNF-----FKVALMTKNMS---SLETLDVSLNSLNSHAYDRTC 424
Query: 703 SWYSYIPI-----NLMRKSVALKLPSLSGLCSLRKLNLTDCNLMEGALPSDIGNLCSLKE 757
+W I + N++ SV LP ++ L+L + +M ++P D+ +L +L+E
Sbjct: 425 AWAESILVLNLSSNMLTGSVFRCLPP-----KVKVLDLHNNRIM--SIPKDVTHLQALQE 477
Query: 758 LYLSKNSFVSLPTSI-THLSKLLNIELED 785
L ++ N S+P + L+ L I L D
Sbjct: 478 LNVASNQLKSVPDGVFDRLTSLQYIWLHD 506
>pdb|2CQZ|A Chain A, Crystal Structure Of Ph0347 Protein From Pyrococcus
Horikoshii Ot3
pdb|2CQZ|B Chain B, Crystal Structure Of Ph0347 Protein From Pyrococcus
Horikoshii Ot3
pdb|2CQZ|C Chain C, Crystal Structure Of Ph0347 Protein From Pyrococcus
Horikoshii Ot3
pdb|2CQZ|D Chain D, Crystal Structure Of Ph0347 Protein From Pyrococcus
Horikoshii Ot3
pdb|2CQZ|E Chain E, Crystal Structure Of Ph0347 Protein From Pyrococcus
Horikoshii Ot3
pdb|2CQZ|F Chain F, Crystal Structure Of Ph0347 Protein From Pyrococcus
Horikoshii Ot3
Length = 177
Score = 30.4 bits (67), Expect = 5.4, Method: Composition-based stats.
Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 170 FKTYQPLQECVQLSARIIRYAGGLPLALEVLGSFLSG-RSVDE-WRSTLERLEIEPPSEI 227
++ Y+ QEC A+++R A L + L+ LSG +++DE W + E +E +
Sbjct: 106 YELYREYQECSSPEAQLVRIADKLDMILQAYQYELSGNKNLDEFWEAIEEIKRLELSKYL 165
Query: 228 LDIL 231
DIL
Sbjct: 166 EDIL 169
>pdb|3CVR|A Chain A, Crystal Structure Of The Full Length Ipah3
Length = 571
Score = 30.4 bits (67), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 78/175 (44%), Gaps = 25/175 (14%)
Query: 693 ISGTAVPHSTSWYSY----IPINLMRKSVALKLPSLSGLCSLRKLNLTDCNLMEGALPSD 748
ISGT + ++W + +P ++V+L L S +LN + + + LP
Sbjct: 22 ISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLSSLPDNLPPQ 81
Query: 749 IGNLCSLKELYLSKNSFVSLPTSITHLSKLLNIELEDC-KRLQSLPQLPPNIRQVRV--N 805
I L +++N+ +SLP L L + C RL +LP+LP +++ + V N
Sbjct: 82 I------TVLEITQNALISLPELPASLEYL-----DACDNRLSTLPELPASLKHLDVDNN 130
Query: 806 GCASLVTLLDALKLCKSDSTMIACL----DSLKLLG--NKSLAF-SMLREYLEAV 853
L L L+ +D+ + L SL++L N L F L E LEA+
Sbjct: 131 QLTXLPELPALLEYINADNNQLTXLPELPTSLEVLSVRNNQLTFLPELPESLEAL 185
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 30.4 bits (67), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 51/103 (49%), Gaps = 8/103 (7%)
Query: 347 YHHENEVYLCASAKAFSKMTNLRLLKICNLQL---PNGLEYLSNRLRLLGWRGYPLKFLP 403
Y H+N++ F + NL+ L + + QL P G+ +L +L L LP
Sbjct: 46 YLHDNQITK-LEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLP 104
Query: 404 SNLQMDKTI---EIYMCYSRIGELWKGIKHLDKLKVMILSHSE 443
S + D+ + E++MC +++ EL +GI+ L L + L ++
Sbjct: 105 SAV-FDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQ 146
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 30.0 bits (66), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 8/62 (12%)
Query: 747 SDIGNLC----SLKELYLSKNSFVSLPTSITHLSKLLNIELEDCKRLQSLPQLPPNIRQV 802
++I +LC SL+EL +S N + LP L +L+ L +P+LP N++Q+
Sbjct: 307 NEIRSLCDLPPSLEELNVSNNKLIELPALPPRLERLI----ASFNHLAEVPELPQNLKQL 362
Query: 803 RV 804
V
Sbjct: 363 HV 364
>pdb|2P1M|B Chain B, Tir1-ask1 Complex Structure
pdb|2P1N|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiqutin Ligase
pdb|2P1N|E Chain E, Mechanism Of Auxin Perception By The Tir1 Ubiqutin Ligase
pdb|2P1O|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|2P1P|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|2P1Q|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|3C6N|B Chain B, Small Molecule Agonists And Antagonists Of F-Box Protein-
Substrate Interactions In Auxin Perception And Signaling
pdb|3C6O|B Chain B, Small Molecule Agonists And Antagonists Of F-Box
Protein-Substrate Interactions In Auxin Perception And
Signaling
pdb|3C6P|B Chain B, Small Molecule Agonists And Antagonists Of F-Box Protein-
Substrate Interactions In Auxin Perception And Signaling
Length = 594
Score = 30.0 bits (66), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 25/41 (60%)
Query: 724 LSGLCSLRKLNLTDCNLMEGALPSDIGNLCSLKELYLSKNS 764
LSG SLRKL + DC + AL ++ L +++ L++S S
Sbjct: 477 LSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCS 517
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 29.6 bits (65), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 41/196 (20%), Positives = 90/196 (45%), Gaps = 11/196 (5%)
Query: 608 PEIVRSMKDLSELFLDGTS--IKEVPSSIEXXXXXXXXXXSDCKNLVRLPSSIIALKSLK 665
P + ++ L+ L++ G + + +P +I + +P + +K+L
Sbjct: 69 PSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128
Query: 666 TLNLSGCFKLENVPETLGQIESLEELDISGT----AVPHSTSWYS--YIPINLMRKSVAL 719
TL+ S +P ++ + +L + G A+P S +S + + + R +
Sbjct: 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTG 188
Query: 720 KLPSLSGLCSLRKLNLTDCNLMEGALPSDIGNLCSLKELYLSKNSFVSLPTSITHLSKLL 779
K+P +L ++L+ N++EG G+ + ++++L+KNS ++ LSK L
Sbjct: 189 KIPPTFANLNLAFVDLSR-NMLEGDASVLFGSDKNTQKIHLAKNS-LAFDLGKVGLSKNL 246
Query: 780 N-IELEDCKRLQSLPQ 794
N ++L + + +LPQ
Sbjct: 247 NGLDLRNNRIYGTLPQ 262
>pdb|1VSY|5 Chain 5, Proteasome Activator Complex
pdb|1VSY|8 Chain 8, Proteasome Activator Complex
pdb|3L5Q|6 Chain 6, Proteasome Activator Complex
pdb|3L5Q|8 Chain 8, Proteasome Activator Complex
Length = 997
Score = 29.6 bits (65), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 39/92 (42%), Gaps = 7/92 (7%)
Query: 285 ITVHNNTLWMHDLLQELGQQIVQRQSPEELGKRSRLWKEEEVCHVLTESTGTELVEGIVL 344
I +H +W DL GQ+ V + P L + + HV T T +
Sbjct: 57 ILLHGLKVWFTDL----GQETVFNEDPNAFIDVDFLENVQSLSHVNEPFTRTNFA---IR 109
Query: 345 DNYHHENEVYLCASAKAFSKMTNLRLLKICNL 376
N H++ V L ++ + SK+ NL L+ I L
Sbjct: 110 ANSLHQSRVLLHSTNRKASKLENLLLVDIIQL 141
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,342,873
Number of Sequences: 62578
Number of extensions: 1187784
Number of successful extensions: 2694
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 2634
Number of HSP's gapped (non-prelim): 79
length of query: 1074
length of database: 14,973,337
effective HSP length: 109
effective length of query: 965
effective length of database: 8,152,335
effective search space: 7867003275
effective search space used: 7867003275
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)