Query 001458
Match_columns 1074
No_of_seqs 875 out of 5547
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 01:19:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001458.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001458hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 100.0 1E-100 2E-105 985.0 81.0 881 1-1008 189-1101(1153)
2 KOG4658 Apoptotic ATPase [Sign 100.0 8.6E-60 1.9E-64 572.3 33.8 639 2-816 164-848 (889)
3 PLN00113 leucine-rich repeat r 100.0 1.2E-38 2.6E-43 412.1 34.2 496 313-814 43-564 (968)
4 PLN00113 leucine-rich repeat r 100.0 2.4E-37 5.2E-42 400.0 32.7 458 357-815 109-589 (968)
5 PF00931 NB-ARC: NB-ARC domain 100.0 3E-38 6.4E-43 349.7 13.9 268 2-273 2-284 (287)
6 KOG4194 Membrane glycoprotein 100.0 2.7E-30 5.8E-35 280.5 6.4 404 385-878 76-488 (873)
7 KOG0444 Cytoskeletal regulator 100.0 1.6E-31 3.4E-36 290.9 -3.4 365 389-793 9-379 (1255)
8 KOG4194 Membrane glycoprotein 99.9 2.2E-28 4.7E-33 265.7 5.5 368 368-772 80-464 (873)
9 KOG0444 Cytoskeletal regulator 99.9 1.5E-29 3.3E-34 275.5 -5.1 366 409-816 7-381 (1255)
10 KOG0472 Leucine-rich repeat pr 99.9 6.3E-30 1.4E-34 266.4 -11.9 405 357-788 82-540 (565)
11 PLN03210 Resistant to P. syrin 99.9 2.7E-24 5.7E-29 278.0 27.2 314 471-814 580-910 (1153)
12 KOG0472 Leucine-rich repeat pr 99.9 1E-28 2.3E-33 257.4 -12.1 392 389-808 70-539 (565)
13 KOG0618 Serine/threonine phosp 99.9 5.2E-27 1.1E-31 269.0 -4.9 422 359-810 38-489 (1081)
14 KOG0618 Serine/threonine phosp 99.9 3.3E-25 7.2E-30 254.3 -5.7 447 368-839 23-487 (1081)
15 PRK15387 E3 ubiquitin-protein 99.7 3.1E-16 6.6E-21 188.1 18.3 71 388-465 202-272 (788)
16 PRK15387 E3 ubiquitin-protein 99.7 3.6E-16 7.8E-21 187.5 17.3 263 368-682 203-465 (788)
17 KOG4237 Extracellular matrix p 99.7 8.8E-18 1.9E-22 176.3 -0.8 289 392-698 51-358 (498)
18 PRK15370 E3 ubiquitin-protein 99.6 1.3E-15 2.8E-20 184.1 13.6 114 367-489 179-293 (754)
19 PRK15370 E3 ubiquitin-protein 99.6 1.1E-15 2.4E-20 184.8 12.9 96 385-489 176-272 (754)
20 KOG4237 Extracellular matrix p 99.6 7.8E-17 1.7E-21 169.2 -2.1 394 376-786 56-498 (498)
21 KOG0617 Ras suppressor protein 99.5 7.7E-16 1.7E-20 143.4 -4.5 172 613-810 31-203 (264)
22 cd00116 LRR_RI Leucine-rich re 99.5 1.6E-14 3.5E-19 162.8 3.5 41 517-557 20-64 (319)
23 cd00116 LRR_RI Leucine-rich re 99.5 2E-14 4.4E-19 162.0 2.7 239 535-787 14-289 (319)
24 KOG0617 Ras suppressor protein 99.4 7E-15 1.5E-19 137.1 -4.7 163 517-683 30-193 (264)
25 PRK04841 transcriptional regul 99.3 1.4E-10 3E-15 150.0 23.0 283 6-309 20-335 (903)
26 KOG4658 Apoptotic ATPase [Sign 99.2 5.4E-11 1.2E-15 146.6 8.8 106 367-496 524-635 (889)
27 PF05729 NACHT: NACHT domain 99.1 6.6E-10 1.4E-14 111.9 11.7 141 20-169 1-163 (166)
28 KOG1259 Nischarin, modulator o 99.0 4.7E-11 1E-15 121.4 0.2 136 611-769 280-415 (490)
29 KOG3207 Beta-tubulin folding c 99.0 1.4E-10 3.1E-15 124.6 0.7 206 540-786 117-336 (505)
30 PRK00411 cdc6 cell division co 99.0 3E-08 6.5E-13 115.0 20.2 237 2-250 36-306 (394)
31 KOG3207 Beta-tubulin folding c 98.9 2.8E-10 6.1E-15 122.3 1.6 229 504-766 105-339 (505)
32 TIGR03015 pepcterm_ATPase puta 98.9 5.8E-08 1.3E-12 106.2 19.1 178 19-204 43-242 (269)
33 KOG1909 Ran GTPase-activating 98.8 7.1E-10 1.5E-14 116.3 0.8 188 586-787 87-309 (382)
34 TIGR02928 orc1/cdc6 family rep 98.8 2.8E-07 6.1E-12 105.7 22.3 238 2-250 21-298 (365)
35 PF01637 Arch_ATPase: Archaeal 98.8 3.2E-08 6.9E-13 105.9 11.2 193 2-199 5-233 (234)
36 KOG0532 Leucine-rich repeat (L 98.8 6.4E-10 1.4E-14 123.1 -2.0 77 729-808 212-291 (722)
37 TIGR00635 ruvB Holliday juncti 98.8 8.1E-08 1.8E-12 107.1 14.6 257 3-288 11-289 (305)
38 KOG1259 Nischarin, modulator o 98.7 2.5E-09 5.4E-14 109.1 1.1 224 536-787 174-410 (490)
39 COG4886 Leucine-rich repeat (L 98.7 1.3E-08 2.8E-13 118.2 6.7 119 370-489 97-219 (394)
40 KOG0532 Leucine-rich repeat (L 98.7 6.2E-10 1.3E-14 123.2 -4.4 177 605-807 88-270 (722)
41 PRK00080 ruvB Holliday junctio 98.7 3.4E-08 7.3E-13 110.8 9.1 264 3-288 32-310 (328)
42 COG2909 MalT ATP-dependent tra 98.7 8.3E-07 1.8E-11 104.3 18.8 283 7-310 26-342 (894)
43 COG4886 Leucine-rich repeat (L 98.6 3.9E-08 8.4E-13 114.2 7.6 196 391-608 97-294 (394)
44 COG2256 MGS1 ATPase related to 98.6 3.6E-07 7.8E-12 98.5 13.8 151 16-195 45-207 (436)
45 COG3903 Predicted ATPase [Gene 98.6 2.9E-08 6.3E-13 107.7 4.8 279 18-309 13-317 (414)
46 PF14580 LRR_9: Leucine-rich r 98.6 4.1E-08 8.9E-13 97.3 5.3 105 543-650 18-125 (175)
47 PRK06893 DNA replication initi 98.6 3.6E-07 7.7E-12 96.6 12.7 148 19-198 39-201 (229)
48 PF14580 LRR_9: Leucine-rich r 98.6 4.4E-08 9.6E-13 97.1 4.8 126 363-488 16-149 (175)
49 KOG1909 Ran GTPase-activating 98.6 1.3E-08 2.9E-13 106.9 1.1 239 408-650 29-310 (382)
50 PRK15386 type III secretion pr 98.6 3E-07 6.6E-12 101.9 10.9 161 611-809 48-212 (426)
51 TIGR03420 DnaA_homol_Hda DnaA 98.5 2E-06 4.4E-11 91.3 15.4 164 4-201 25-202 (226)
52 COG3899 Predicted ATPase [Gene 98.5 7.3E-07 1.6E-11 111.0 13.7 206 100-308 153-388 (849)
53 PF13173 AAA_14: AAA domain 98.4 3.1E-07 6.8E-12 87.6 6.5 119 20-161 3-127 (128)
54 PF13401 AAA_22: AAA domain; P 98.4 1.1E-06 2.3E-11 84.5 8.3 113 19-138 4-125 (131)
55 PRK13342 recombination factor 98.3 7E-06 1.5E-10 95.1 13.9 162 8-200 27-196 (413)
56 PRK15386 type III secretion pr 98.3 3.7E-06 8E-11 93.4 10.4 134 634-807 48-187 (426)
57 PTZ00112 origin recognition co 98.3 2.4E-05 5.3E-10 92.9 17.3 232 2-246 761-1026(1164)
58 KOG4341 F-box protein containi 98.3 7.8E-08 1.7E-12 103.4 -2.9 230 565-810 188-439 (483)
59 cd00009 AAA The AAA+ (ATPases 98.2 1.3E-05 2.7E-10 78.6 12.2 120 2-140 4-131 (151)
60 PLN03150 hypothetical protein; 98.2 3.3E-06 7.1E-11 102.8 9.0 105 593-697 420-526 (623)
61 KOG2120 SCF ubiquitin ligase, 98.2 1.2E-07 2.6E-12 97.3 -2.9 174 522-697 187-374 (419)
62 TIGR01242 26Sp45 26S proteasom 98.2 1.2E-05 2.6E-10 91.6 12.8 148 19-194 156-328 (364)
63 PRK08727 hypothetical protein; 98.2 1.5E-05 3.2E-10 84.6 12.3 145 20-196 42-200 (233)
64 KOG2028 ATPase related to the 98.2 2.6E-05 5.6E-10 82.6 13.5 134 8-168 153-293 (554)
65 KOG4341 F-box protein containi 98.2 1.5E-07 3.3E-12 101.2 -3.1 262 515-793 159-443 (483)
66 PLN03150 hypothetical protein; 98.1 4.2E-06 9.1E-11 101.9 8.6 108 569-676 420-529 (623)
67 KOG0531 Protein phosphatase 1, 98.1 4.3E-07 9.4E-12 105.6 -0.5 195 540-787 91-288 (414)
68 PRK14963 DNA polymerase III su 98.1 1.8E-05 4E-10 92.7 12.8 178 5-197 23-214 (504)
69 TIGR00678 holB DNA polymerase 98.1 6.9E-05 1.5E-09 76.9 15.7 160 7-196 3-187 (188)
70 KOG0531 Protein phosphatase 1, 98.1 3.8E-07 8.3E-12 106.0 -1.5 173 587-787 91-266 (414)
71 KOG1859 Leucine-rich repeat pr 98.1 1.3E-07 2.8E-12 107.7 -5.6 130 616-769 165-295 (1096)
72 KOG2120 SCF ubiquitin ligase, 98.1 2.7E-07 5.8E-12 94.7 -3.0 178 544-738 185-373 (419)
73 PRK09087 hypothetical protein; 98.1 4.4E-05 9.5E-10 80.2 13.4 137 19-198 44-193 (226)
74 PRK14961 DNA polymerase III su 98.1 0.00015 3.3E-09 82.4 18.9 179 5-196 25-216 (363)
75 PRK12402 replication factor C 98.1 5.5E-05 1.2E-09 85.8 15.3 188 3-197 22-223 (337)
76 PRK08084 DNA replication initi 98.1 5E-05 1.1E-09 80.6 13.8 148 19-198 45-207 (235)
77 PRK07003 DNA polymerase III su 98.0 0.00013 2.7E-09 86.7 17.7 170 5-199 25-220 (830)
78 PLN03025 replication factor C 98.0 8.8E-05 1.9E-09 82.9 15.5 169 5-195 22-195 (319)
79 PRK04195 replication factor C 98.0 9.1E-05 2E-09 87.7 16.4 169 3-198 21-200 (482)
80 PRK05642 DNA replication initi 98.0 8.5E-05 1.8E-09 78.8 14.2 147 20-198 46-206 (234)
81 PRK13341 recombination factor 98.0 5.9E-05 1.3E-09 91.9 14.5 156 7-194 42-211 (725)
82 KOG2982 Uncharacterized conser 98.0 2.5E-06 5.5E-11 87.7 1.9 88 541-628 68-159 (418)
83 PF00308 Bac_DnaA: Bacterial d 98.0 0.00011 2.3E-09 77.0 13.8 154 18-194 33-202 (219)
84 PRK14949 DNA polymerase III su 98.0 0.00018 3.9E-09 87.2 17.2 175 5-200 25-221 (944)
85 cd01128 rho_factor Transcripti 98.0 5.6E-06 1.2E-10 87.6 4.1 94 19-114 16-116 (249)
86 PRK09376 rho transcription ter 98.0 1.1E-05 2.3E-10 88.9 6.2 94 20-115 170-270 (416)
87 PRK14960 DNA polymerase III su 97.9 0.00028 6E-09 83.0 17.9 167 5-196 24-215 (702)
88 PRK14087 dnaA chromosomal repl 97.9 0.00023 5E-09 82.7 17.0 163 20-201 142-320 (450)
89 PRK08903 DnaA regulatory inact 97.9 0.00012 2.7E-09 77.5 13.6 161 6-203 30-202 (227)
90 PF13855 LRR_8: Leucine rich r 97.9 9.2E-06 2E-10 65.9 3.7 58 615-672 1-59 (61)
91 PF13855 LRR_8: Leucine rich r 97.9 9.5E-06 2.1E-10 65.9 3.8 34 545-578 2-36 (61)
92 PRK12323 DNA polymerase III su 97.9 0.00026 5.7E-09 83.0 16.7 185 5-197 25-222 (700)
93 PRK05564 DNA polymerase III su 97.9 0.00038 8.3E-09 77.6 17.7 168 5-200 13-190 (313)
94 PRK14957 DNA polymerase III su 97.9 0.00025 5.5E-09 83.4 16.7 170 5-200 25-221 (546)
95 COG1474 CDC6 Cdc6-related prot 97.9 0.0003 6.5E-09 79.1 16.3 183 2-192 23-229 (366)
96 PRK14956 DNA polymerase III su 97.9 0.00012 2.5E-09 83.8 12.9 180 5-195 27-217 (484)
97 PF05496 RuvB_N: Holliday junc 97.8 0.00015 3.2E-09 73.7 11.2 147 17-196 48-217 (233)
98 PRK07471 DNA polymerase III su 97.8 0.0013 2.8E-08 74.2 20.1 96 100-201 140-239 (365)
99 PRK07940 DNA polymerase III su 97.8 0.00055 1.2E-08 77.8 17.0 169 4-200 13-213 (394)
100 PRK06645 DNA polymerase III su 97.8 0.00056 1.2E-08 80.0 17.0 96 99-196 126-225 (507)
101 PRK08691 DNA polymerase III su 97.8 0.00045 9.7E-09 82.1 16.1 170 5-196 25-216 (709)
102 PRK03992 proteasome-activating 97.8 0.00026 5.6E-09 81.1 13.9 165 2-194 137-337 (389)
103 PRK06620 hypothetical protein; 97.8 0.00017 3.7E-09 75.0 11.4 131 20-194 45-183 (214)
104 PRK00440 rfc replication facto 97.8 0.00064 1.4E-08 76.4 17.0 171 4-196 25-199 (319)
105 PRK14962 DNA polymerase III su 97.8 0.00055 1.2E-08 79.8 16.6 101 100-202 116-221 (472)
106 TIGR02397 dnaX_nterm DNA polym 97.8 0.00055 1.2E-08 78.3 16.6 173 3-200 21-218 (355)
107 KOG1859 Leucine-rich repeat pr 97.8 7.6E-07 1.6E-11 101.7 -6.9 122 548-673 168-290 (1096)
108 PF13191 AAA_16: AAA ATPase do 97.8 9.3E-05 2E-09 75.8 9.0 45 2-46 6-51 (185)
109 TIGR00362 DnaA chromosomal rep 97.8 0.0005 1.1E-08 79.7 16.0 155 19-196 136-306 (405)
110 KOG2982 Uncharacterized conser 97.7 8.3E-06 1.8E-10 84.0 0.8 229 546-813 47-284 (418)
111 PRK14958 DNA polymerase III su 97.7 0.00098 2.1E-08 78.6 17.8 168 5-197 25-217 (509)
112 PRK07994 DNA polymerase III su 97.7 0.00081 1.8E-08 80.4 16.3 180 5-196 25-216 (647)
113 PRK14951 DNA polymerase III su 97.7 0.0014 3E-08 78.3 17.9 178 5-197 25-222 (618)
114 PRK14959 DNA polymerase III su 97.7 0.0016 3.5E-08 77.2 18.2 187 5-204 25-225 (624)
115 TIGR00767 rho transcription te 97.7 5.2E-05 1.1E-09 84.1 5.5 93 20-114 169-268 (415)
116 PRK14088 dnaA chromosomal repl 97.6 0.00059 1.3E-08 79.3 14.2 156 19-196 130-301 (440)
117 PRK05896 DNA polymerase III su 97.6 0.0015 3.2E-08 77.1 17.2 98 102-201 120-222 (605)
118 PRK14969 DNA polymerase III su 97.6 0.00079 1.7E-08 79.9 15.3 166 5-195 25-215 (527)
119 PRK09112 DNA polymerase III su 97.6 0.00084 1.8E-08 75.2 14.7 182 6-200 33-240 (351)
120 PRK14964 DNA polymerase III su 97.6 0.0015 3.2E-08 75.8 17.1 167 5-196 22-213 (491)
121 PTZ00361 26 proteosome regulat 97.6 0.00036 7.9E-09 80.0 11.8 147 2-171 189-369 (438)
122 PRK00149 dnaA chromosomal repl 97.6 0.00074 1.6E-08 79.3 14.8 155 19-196 148-318 (450)
123 PRK14952 DNA polymerase III su 97.6 0.0031 6.6E-08 75.1 19.6 176 5-202 22-222 (584)
124 COG5238 RNA1 Ran GTPase-activa 97.6 1.5E-05 3.2E-10 81.2 0.2 232 540-786 26-313 (388)
125 PRK12422 chromosomal replicati 97.6 0.00089 1.9E-08 77.6 14.7 131 20-171 142-286 (445)
126 PRK14955 DNA polymerase III su 97.6 0.00046 1E-08 79.4 12.1 185 5-196 25-224 (397)
127 TIGR03689 pup_AAA proteasome A 97.6 0.0014 3E-08 76.4 15.7 136 19-169 216-378 (512)
128 PF14516 AAA_35: AAA-like doma 97.6 0.0072 1.6E-07 67.7 20.9 180 20-206 32-245 (331)
129 TIGR02881 spore_V_K stage V sp 97.5 0.00046 1E-08 74.7 10.7 131 18-170 41-192 (261)
130 PRK07764 DNA polymerase III su 97.5 0.0029 6.2E-08 78.5 18.5 171 5-196 24-217 (824)
131 PRK14970 DNA polymerase III su 97.5 0.0014 3E-08 75.1 14.9 167 5-195 26-204 (367)
132 PHA02544 44 clamp loader, smal 97.5 0.0016 3.5E-08 73.0 15.0 138 4-167 29-171 (316)
133 COG1373 Predicted ATPase (AAA+ 97.5 0.0012 2.7E-08 75.5 14.0 119 21-165 39-163 (398)
134 PRK14954 DNA polymerase III su 97.5 0.0036 7.7E-08 75.1 18.2 184 5-195 25-223 (620)
135 PRK08116 hypothetical protein; 97.5 0.00033 7.2E-09 75.6 8.8 101 20-138 115-220 (268)
136 PF00004 AAA: ATPase family as 97.5 0.001 2.3E-08 63.6 11.4 23 22-44 1-23 (132)
137 PF12799 LRR_4: Leucine Rich r 97.5 8.9E-05 1.9E-09 55.1 2.9 33 754-786 2-34 (44)
138 smart00382 AAA ATPases associa 97.5 0.00029 6.3E-09 68.2 7.6 35 20-54 3-37 (148)
139 PRK09111 DNA polymerase III su 97.5 0.0022 4.8E-08 76.8 16.0 184 4-198 32-231 (598)
140 PRK05707 DNA polymerase III su 97.4 0.0024 5.2E-08 70.9 15.0 94 100-200 106-203 (328)
141 PRK14950 DNA polymerase III su 97.4 0.0057 1.2E-07 74.0 19.3 183 5-199 25-220 (585)
142 TIGR02880 cbbX_cfxQ probable R 97.4 0.002 4.4E-08 70.4 13.9 129 21-170 60-209 (284)
143 PRK08451 DNA polymerase III su 97.4 0.0056 1.2E-07 71.8 17.7 172 5-197 23-215 (535)
144 PTZ00454 26S protease regulato 97.4 0.0023 5E-08 73.0 14.1 152 18-196 178-353 (398)
145 KOG2543 Origin recognition com 97.4 0.002 4.3E-08 69.7 12.4 160 2-168 12-192 (438)
146 PRK14953 DNA polymerase III su 97.3 0.0097 2.1E-07 69.9 18.9 178 5-198 25-218 (486)
147 PRK14086 dnaA chromosomal repl 97.3 0.0055 1.2E-07 72.4 16.7 131 20-171 315-461 (617)
148 KOG0989 Replication factor C, 97.3 0.00094 2E-08 70.1 9.0 168 17-201 55-232 (346)
149 TIGR02903 spore_lon_C ATP-depe 97.3 0.0028 6E-08 76.8 14.5 111 91-203 282-398 (615)
150 PRK07133 DNA polymerase III su 97.3 0.0044 9.5E-08 74.7 15.8 180 5-200 27-220 (725)
151 CHL00181 cbbX CbbX; Provisiona 97.3 0.006 1.3E-07 66.6 15.6 131 20-171 60-211 (287)
152 COG1222 RPT1 ATP-dependent 26S 97.3 0.003 6.6E-08 67.8 12.6 164 2-196 157-359 (406)
153 PRK14948 DNA polymerase III su 97.3 0.004 8.6E-08 75.2 15.4 183 4-198 24-220 (620)
154 PF12799 LRR_4: Leucine Rich r 97.3 0.00026 5.6E-09 52.7 3.3 40 728-769 1-40 (44)
155 COG0593 DnaA ATPase involved i 97.2 0.002 4.3E-08 72.3 11.3 160 19-198 113-288 (408)
156 PRK06305 DNA polymerase III su 97.2 0.015 3.3E-07 67.8 18.7 184 4-200 25-223 (451)
157 KOG1644 U2-associated snRNP A' 97.2 0.00065 1.4E-08 66.9 5.9 81 567-649 42-124 (233)
158 KOG3665 ZYG-1-like serine/thre 97.2 0.00019 4.1E-09 87.2 2.8 19 682-700 169-187 (699)
159 CHL00176 ftsH cell division pr 97.2 0.011 2.4E-07 71.5 17.7 149 19-193 216-387 (638)
160 KOG3665 ZYG-1-like serine/thre 97.2 0.0003 6.5E-09 85.5 4.3 111 589-700 146-264 (699)
161 PTZ00202 tuzin; Provisional 97.1 0.0027 5.8E-08 70.6 10.6 150 2-168 268-433 (550)
162 PRK12377 putative replication 97.1 0.0018 3.9E-08 68.6 9.1 36 19-54 101-136 (248)
163 PF05621 TniB: Bacterial TniB 97.1 0.011 2.3E-07 63.4 14.8 186 4-198 45-259 (302)
164 PLN00020 ribulose bisphosphate 97.1 0.012 2.6E-07 64.4 15.3 31 17-47 146-176 (413)
165 PF05673 DUF815: Protein of un 97.1 0.022 4.8E-07 59.0 16.4 29 19-47 52-80 (249)
166 COG5238 RNA1 Ran GTPase-activa 97.1 0.00027 5.9E-09 72.3 2.4 190 408-601 29-252 (388)
167 PRK06647 DNA polymerase III su 97.1 0.023 5E-07 67.9 19.0 181 5-197 25-217 (563)
168 PRK08181 transposase; Validate 97.1 0.0013 2.9E-08 70.5 7.8 35 20-54 107-141 (269)
169 PRK14971 DNA polymerase III su 97.1 0.027 5.8E-07 68.2 19.7 166 5-196 26-218 (614)
170 PRK06835 DNA replication prote 97.1 0.00095 2.1E-08 73.9 6.8 35 20-54 184-218 (329)
171 TIGR03345 VI_ClpV1 type VI sec 97.1 0.0055 1.2E-07 77.0 14.2 141 3-168 194-362 (852)
172 KOG0991 Replication factor C, 97.0 0.0091 2E-07 60.0 12.4 79 16-114 45-126 (333)
173 PRK07952 DNA replication prote 97.0 0.0014 3.1E-08 69.2 7.3 36 19-54 99-134 (244)
174 KOG0741 AAA+-type ATPase [Post 97.0 0.011 2.4E-07 66.4 13.8 132 15-168 534-685 (744)
175 PRK07399 DNA polymerase III su 97.0 0.015 3.3E-07 64.2 15.0 184 5-200 13-221 (314)
176 TIGR02640 gas_vesic_GvpN gas v 97.0 0.0098 2.1E-07 64.4 13.2 39 5-47 11-49 (262)
177 PRK08769 DNA polymerase III su 97.0 0.021 4.5E-07 63.0 15.8 182 5-201 13-209 (319)
178 PRK09183 transposase/IS protei 97.0 0.0021 4.6E-08 69.1 8.0 34 20-53 103-136 (259)
179 PRK06526 transposase; Provisio 96.9 0.0012 2.6E-08 70.5 5.9 28 19-46 98-125 (254)
180 TIGR01241 FtsH_fam ATP-depende 96.9 0.014 3.1E-07 69.5 15.5 150 19-194 88-260 (495)
181 PRK14965 DNA polymerase III su 96.9 0.014 3.1E-07 70.3 15.6 174 5-200 25-221 (576)
182 PRK09361 radB DNA repair and r 96.9 0.0031 6.7E-08 66.8 8.6 50 5-54 9-58 (225)
183 TIGR02639 ClpA ATP-dependent C 96.9 0.0069 1.5E-07 75.6 12.9 145 2-169 188-358 (731)
184 KOG1644 U2-associated snRNP A' 96.9 0.0018 3.9E-08 63.9 6.0 105 384-488 39-149 (233)
185 PF04665 Pox_A32: Poxvirus A32 96.9 0.0014 3E-08 68.4 5.5 34 21-54 15-48 (241)
186 TIGR00602 rad24 checkpoint pro 96.9 0.0055 1.2E-07 73.4 11.2 42 3-44 91-135 (637)
187 PRK08118 topology modulation p 96.8 0.00081 1.8E-08 67.2 3.4 32 21-52 3-37 (167)
188 PRK06921 hypothetical protein; 96.8 0.0019 4E-08 69.7 6.4 36 19-54 117-153 (266)
189 COG3267 ExeA Type II secretory 96.8 0.048 1E-06 56.4 16.0 177 18-202 50-247 (269)
190 PRK05563 DNA polymerase III su 96.8 0.049 1.1E-06 65.4 18.8 180 5-196 25-216 (559)
191 KOG0744 AAA+-type ATPase [Post 96.8 0.008 1.7E-07 63.5 10.3 80 19-113 177-262 (423)
192 PRK06090 DNA polymerase III su 96.8 0.1 2.2E-06 57.6 19.2 176 5-200 12-201 (319)
193 PRK10865 protein disaggregatio 96.7 0.011 2.4E-07 74.6 13.0 145 2-169 184-354 (857)
194 PRK11331 5-methylcytosine-spec 96.7 0.0043 9.4E-08 70.4 8.3 48 3-54 182-231 (459)
195 PF07693 KAP_NTPase: KAP famil 96.7 0.04 8.7E-07 62.0 16.4 42 5-46 5-47 (325)
196 CHL00095 clpC Clp protease ATP 96.7 0.0094 2E-07 75.3 11.9 144 2-167 185-352 (821)
197 cd01133 F1-ATPase_beta F1 ATP 96.7 0.0028 6E-08 67.6 6.1 52 20-73 70-121 (274)
198 PF01695 IstB_IS21: IstB-like 96.7 0.0021 4.5E-08 64.8 4.9 36 19-54 47-82 (178)
199 TIGR03346 chaperone_ClpB ATP-d 96.7 0.012 2.6E-07 74.6 12.6 145 2-169 179-349 (852)
200 PRK06871 DNA polymerase III su 96.6 0.085 1.8E-06 58.3 17.5 175 5-197 11-200 (325)
201 PRK10536 hypothetical protein; 96.6 0.0059 1.3E-07 64.1 8.0 117 20-140 75-214 (262)
202 KOG1947 Leucine rich repeat pr 96.6 0.00041 9E-09 83.0 -0.7 35 519-553 187-223 (482)
203 cd01394 radB RadB. The archaea 96.6 0.0042 9.1E-08 65.4 7.0 51 4-54 4-54 (218)
204 cd01120 RecA-like_NTPases RecA 96.6 0.0043 9.4E-08 61.8 6.8 34 21-54 1-34 (165)
205 PF10443 RNA12: RNA12 protein; 96.6 0.19 4.1E-06 56.5 19.8 105 101-209 148-288 (431)
206 KOG2227 Pre-initiation complex 96.6 0.051 1.1E-06 60.7 15.1 162 3-169 157-338 (529)
207 PF13207 AAA_17: AAA domain; P 96.6 0.0018 4E-08 60.9 3.6 23 21-43 1-23 (121)
208 PRK08058 DNA polymerase III su 96.6 0.065 1.4E-06 60.0 16.4 152 5-168 15-181 (329)
209 PHA00729 NTP-binding motif con 96.6 0.0096 2.1E-07 61.5 8.9 27 18-44 16-42 (226)
210 PRK07993 DNA polymerase III su 96.5 0.047 1E-06 61.0 15.0 178 4-198 10-202 (334)
211 cd01123 Rad51_DMC1_radA Rad51_ 96.5 0.0067 1.4E-07 64.7 7.9 50 5-54 5-60 (235)
212 KOG4579 Leucine-rich repeat (L 96.5 0.0003 6.4E-09 64.7 -2.1 81 590-672 52-133 (177)
213 PRK04296 thymidine kinase; Pro 96.5 0.0037 8.1E-08 64.0 5.6 112 20-140 3-117 (190)
214 COG1618 Predicted nucleotide k 96.5 0.0027 5.9E-08 60.3 4.1 38 20-57 6-45 (179)
215 KOG1947 Leucine rich repeat pr 96.5 0.0005 1.1E-08 82.3 -1.2 58 566-623 268-329 (482)
216 PRK04132 replication factor C 96.5 0.039 8.5E-07 68.2 14.8 149 27-197 574-728 (846)
217 CHL00195 ycf46 Ycf46; Provisio 96.4 0.021 4.4E-07 66.9 11.6 151 18-194 258-429 (489)
218 PF00448 SRP54: SRP54-type pro 96.4 0.0055 1.2E-07 62.8 6.1 36 19-54 1-36 (196)
219 TIGR02237 recomb_radB DNA repa 96.4 0.0074 1.6E-07 63.1 7.2 45 10-54 3-47 (209)
220 cd01393 recA_like RecA is a b 96.4 0.017 3.7E-07 61.1 9.9 50 5-54 5-60 (226)
221 PRK06762 hypothetical protein; 96.3 0.014 3E-07 58.4 8.6 25 19-43 2-26 (166)
222 PRK12608 transcription termina 96.3 0.012 2.5E-07 65.4 8.5 93 21-115 135-234 (380)
223 COG2255 RuvB Holliday junction 96.3 0.019 4E-07 60.0 9.3 142 19-195 52-218 (332)
224 KOG4579 Leucine-rich repeat (L 96.3 0.0004 8.7E-09 63.8 -2.4 104 521-649 28-134 (177)
225 PRK06964 DNA polymerase III su 96.3 0.24 5.1E-06 55.3 18.7 91 100-200 131-225 (342)
226 PRK07261 topology modulation p 96.3 0.013 2.8E-07 58.9 8.1 23 21-43 2-24 (171)
227 PF07728 AAA_5: AAA domain (dy 96.3 0.0031 6.6E-08 61.1 3.2 23 22-44 2-24 (139)
228 COG0470 HolB ATPase involved i 96.3 0.029 6.2E-07 63.2 11.5 133 4-157 9-169 (325)
229 cd00561 CobA_CobO_BtuR ATP:cor 96.2 0.0088 1.9E-07 58.4 6.0 118 20-139 3-138 (159)
230 PRK05541 adenylylsulfate kinas 96.2 0.032 7E-07 56.4 10.4 36 19-54 7-42 (176)
231 KOG2739 Leucine-rich acidic nu 96.2 0.0041 8.8E-08 64.2 3.7 88 723-811 60-157 (260)
232 PRK08699 DNA polymerase III su 96.2 0.14 3.1E-06 56.9 16.0 85 101-196 114-202 (325)
233 TIGR01243 CDC48 AAA family ATP 96.2 0.052 1.1E-06 68.1 14.1 150 19-196 212-383 (733)
234 PRK07667 uridine kinase; Provi 96.1 0.0097 2.1E-07 61.1 6.2 41 5-45 3-43 (193)
235 COG0466 Lon ATP-dependent Lon 96.1 0.034 7.3E-07 65.4 11.1 136 18-169 349-508 (782)
236 TIGR01243 CDC48 AAA family ATP 96.1 0.064 1.4E-06 67.3 14.3 148 19-194 487-657 (733)
237 KOG2739 Leucine-rich acidic nu 96.1 0.0024 5.2E-08 65.9 1.2 61 728-788 91-155 (260)
238 PRK11034 clpA ATP-dependent Cl 96.0 0.041 9E-07 67.9 12.0 145 2-169 192-362 (758)
239 KOG0730 AAA+-type ATPase [Post 96.0 0.048 1.1E-06 63.5 11.6 132 16-172 465-618 (693)
240 PRK11889 flhF flagellar biosyn 96.0 0.048 1E-06 60.8 11.2 37 18-54 240-276 (436)
241 PF02562 PhoH: PhoH-like prote 96.0 0.03 6.5E-07 57.2 9.1 117 19-140 19-157 (205)
242 PRK06696 uridine kinase; Valid 96.0 0.011 2.5E-07 62.3 6.2 44 3-46 5-49 (223)
243 cd00544 CobU Adenosylcobinamid 96.0 0.023 5.1E-07 56.6 8.0 80 21-110 1-82 (169)
244 cd01121 Sms Sms (bacterial rad 96.0 0.02 4.4E-07 64.7 8.5 50 5-54 68-117 (372)
245 KOG0735 AAA+-type ATPase [Post 96.0 0.017 3.7E-07 67.3 7.8 73 20-112 432-505 (952)
246 COG2607 Predicted ATPase (AAA+ 96.0 0.05 1.1E-06 55.5 10.1 29 21-49 87-115 (287)
247 PRK10733 hflB ATP-dependent me 96.0 0.057 1.2E-06 66.2 12.9 129 20-171 186-337 (644)
248 PRK08939 primosomal protein Dn 95.9 0.014 3E-07 64.2 6.7 36 19-54 156-191 (306)
249 TIGR00763 lon ATP-dependent pr 95.9 0.079 1.7E-06 66.6 14.1 29 19-47 347-375 (775)
250 PF13671 AAA_33: AAA domain; P 95.9 0.021 4.6E-07 55.4 7.2 24 21-44 1-24 (143)
251 cd01131 PilT Pilus retraction 95.8 0.032 6.8E-07 57.6 8.5 109 21-142 3-112 (198)
252 PRK12723 flagellar biosynthesi 95.8 0.061 1.3E-06 60.9 11.2 27 18-44 173-199 (388)
253 PF13604 AAA_30: AAA domain; P 95.8 0.042 9.1E-07 56.5 9.1 116 4-140 6-132 (196)
254 TIGR03877 thermo_KaiC_1 KaiC d 95.8 0.033 7.2E-07 59.3 8.6 50 5-54 7-56 (237)
255 PF13177 DNA_pol3_delta2: DNA 95.8 0.071 1.5E-06 52.9 10.4 40 3-43 4-43 (162)
256 PRK06067 flagellar accessory p 95.8 0.028 6E-07 59.9 8.0 50 5-54 11-60 (234)
257 cd00983 recA RecA is a bacter 95.8 0.022 4.7E-07 62.6 7.2 49 6-54 41-90 (325)
258 PRK08233 hypothetical protein; 95.8 0.027 5.8E-07 57.3 7.6 26 19-44 3-28 (182)
259 PF07726 AAA_3: ATPase family 95.8 0.0068 1.5E-07 56.1 2.7 30 22-51 2-31 (131)
260 COG0572 Udk Uridine kinase [Nu 95.7 0.016 3.4E-07 59.1 5.6 31 17-47 6-36 (218)
261 KOG0651 26S proteasome regulat 95.7 0.024 5.1E-07 59.8 6.9 121 19-166 166-313 (388)
262 PF13238 AAA_18: AAA domain; P 95.7 0.0086 1.9E-07 56.9 3.3 22 22-43 1-22 (129)
263 COG1484 DnaC DNA replication p 95.7 0.028 6E-07 60.2 7.4 36 19-54 105-140 (254)
264 KOG1969 DNA replication checkp 95.7 0.032 6.9E-07 65.5 8.2 75 17-114 324-400 (877)
265 PRK09354 recA recombinase A; P 95.7 0.024 5.3E-07 62.7 7.1 49 6-54 46-95 (349)
266 PRK10787 DNA-binding ATP-depen 95.6 0.068 1.5E-06 66.6 11.4 30 18-47 348-377 (784)
267 KOG0733 Nuclear AAA ATPase (VC 95.6 0.12 2.5E-06 59.7 12.0 46 1-46 195-250 (802)
268 KOG0743 AAA+-type ATPase [Post 95.5 0.14 3E-06 57.4 12.2 153 19-207 235-417 (457)
269 PRK00771 signal recognition pa 95.5 0.08 1.7E-06 61.0 10.8 29 18-46 94-122 (437)
270 cd01129 PulE-GspE PulE/GspE Th 95.5 0.062 1.3E-06 58.0 9.4 101 4-120 68-168 (264)
271 TIGR01359 UMP_CMP_kin_fam UMP- 95.5 0.073 1.6E-06 54.2 9.6 23 21-43 1-23 (183)
272 TIGR02012 tigrfam_recA protein 95.5 0.033 7.3E-07 61.1 7.3 49 6-54 41-90 (321)
273 TIGR02858 spore_III_AA stage I 95.5 0.053 1.1E-06 58.4 8.7 118 17-143 109-233 (270)
274 PF00485 PRK: Phosphoribulokin 95.5 0.013 2.7E-07 60.4 3.8 26 21-46 1-26 (194)
275 PF01583 APS_kinase: Adenylyls 95.5 0.018 4E-07 55.9 4.6 35 20-54 3-37 (156)
276 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.4 0.038 8.3E-07 53.7 7.0 34 20-54 27-60 (144)
277 TIGR03499 FlhF flagellar biosy 95.4 0.052 1.1E-06 59.3 8.7 28 18-45 193-220 (282)
278 PRK08356 hypothetical protein; 95.4 0.084 1.8E-06 54.4 9.7 21 20-40 6-26 (195)
279 PF03215 Rad17: Rad17 cell cyc 95.4 0.094 2E-06 61.9 11.2 49 3-53 26-77 (519)
280 PRK10865 protein disaggregatio 95.4 0.09 2E-06 66.5 11.8 25 20-44 599-623 (857)
281 KOG2004 Mitochondrial ATP-depe 95.4 0.11 2.5E-06 60.9 11.2 34 15-48 434-467 (906)
282 PRK14974 cell division protein 95.3 0.16 3.4E-06 56.6 12.0 29 18-46 139-167 (336)
283 COG4088 Predicted nucleotide k 95.3 0.029 6.2E-07 55.6 5.3 31 20-50 2-32 (261)
284 COG0542 clpA ATP-binding subun 95.3 0.073 1.6E-06 64.5 9.8 94 19-123 521-617 (786)
285 KOG0731 AAA+-type ATPase conta 95.2 0.42 9E-06 57.8 15.8 165 3-196 321-520 (774)
286 COG1223 Predicted ATPase (AAA+ 95.2 0.18 3.8E-06 52.0 10.8 127 18-171 150-299 (368)
287 PRK05800 cobU adenosylcobinami 95.2 0.033 7.2E-07 55.6 5.8 81 21-111 3-86 (170)
288 PRK04040 adenylate kinase; Pro 95.2 0.02 4.3E-07 58.3 4.3 25 20-44 3-27 (188)
289 PRK04301 radA DNA repair and r 95.2 0.054 1.2E-06 60.5 8.1 49 6-54 89-143 (317)
290 KOG2123 Uncharacterized conser 95.2 0.0019 4E-08 66.6 -3.2 100 590-692 18-123 (388)
291 PRK11823 DNA repair protein Ra 95.1 0.061 1.3E-06 62.7 8.6 50 5-54 66-115 (446)
292 cd03228 ABCC_MRP_Like The MRP 95.1 0.081 1.8E-06 53.2 8.4 34 20-54 29-62 (171)
293 KOG0728 26S proteasome regulat 95.1 0.4 8.8E-06 48.9 12.9 141 2-169 153-331 (404)
294 PRK05986 cob(I)alamin adenolsy 95.1 0.05 1.1E-06 54.6 6.6 119 19-139 22-158 (191)
295 PF07724 AAA_2: AAA domain (Cd 95.1 0.022 4.8E-07 56.9 4.2 36 19-54 3-39 (171)
296 PRK05703 flhF flagellar biosyn 95.1 0.16 3.5E-06 58.7 11.8 36 19-54 221-258 (424)
297 TIGR00064 ftsY signal recognit 95.1 0.11 2.4E-06 56.2 9.8 38 17-54 70-107 (272)
298 COG0563 Adk Adenylate kinase a 95.1 0.07 1.5E-06 53.7 7.6 23 21-43 2-24 (178)
299 PRK03839 putative kinase; Prov 95.1 0.019 4.1E-07 58.3 3.6 25 21-45 2-26 (180)
300 cd01124 KaiC KaiC is a circadi 95.1 0.095 2.1E-06 53.5 8.9 34 21-54 1-34 (187)
301 cd03223 ABCD_peroxisomal_ALDP 95.1 0.057 1.2E-06 54.0 7.0 24 20-43 28-51 (166)
302 PRK04328 hypothetical protein; 95.1 0.074 1.6E-06 57.0 8.3 50 5-54 9-58 (249)
303 cd02027 APSK Adenosine 5'-phos 95.0 0.098 2.1E-06 51.2 8.5 24 21-44 1-24 (149)
304 PTZ00301 uridine kinase; Provi 95.0 0.02 4.3E-07 59.3 3.7 29 19-47 3-31 (210)
305 TIGR03574 selen_PSTK L-seryl-t 95.0 0.095 2.1E-06 56.4 9.1 26 21-46 1-26 (249)
306 PRK05480 uridine/cytidine kina 95.0 0.022 4.7E-07 59.5 4.1 27 17-43 4-30 (209)
307 cd02019 NK Nucleoside/nucleoti 95.0 0.02 4.3E-07 47.6 3.0 23 21-43 1-23 (69)
308 KOG1970 Checkpoint RAD17-RFC c 95.0 0.098 2.1E-06 59.7 9.2 41 3-43 89-134 (634)
309 PF00910 RNA_helicase: RNA hel 95.0 0.015 3.2E-07 53.3 2.3 26 22-47 1-26 (107)
310 COG1875 NYN ribonuclease and A 95.0 0.073 1.6E-06 57.6 7.7 25 16-40 242-266 (436)
311 COG1428 Deoxynucleoside kinase 95.0 0.02 4.3E-07 57.6 3.3 26 19-44 4-29 (216)
312 TIGR00416 sms DNA repair prote 95.0 0.071 1.5E-06 62.2 8.4 50 5-54 80-129 (454)
313 PRK00625 shikimate kinase; Pro 95.0 0.021 4.5E-07 57.2 3.5 24 21-44 2-25 (173)
314 KOG0734 AAA+-type ATPase conta 95.0 0.13 2.8E-06 58.3 9.7 141 3-170 314-485 (752)
315 cd03214 ABC_Iron-Siderophores_ 94.9 0.1 2.2E-06 53.0 8.6 118 20-142 26-161 (180)
316 TIGR02238 recomb_DMC1 meiotic 94.9 0.059 1.3E-06 59.5 7.2 50 5-54 82-137 (313)
317 TIGR00235 udk uridine kinase. 94.9 0.028 6.1E-07 58.5 4.5 28 17-44 4-31 (207)
318 PRK10867 signal recognition pa 94.9 0.2 4.4E-06 57.6 11.6 28 19-46 100-127 (433)
319 COG1066 Sms Predicted ATP-depe 94.8 0.096 2.1E-06 57.9 8.3 49 5-54 79-127 (456)
320 PF00406 ADK: Adenylate kinase 94.8 0.091 2E-06 51.6 7.7 20 24-43 1-20 (151)
321 COG0468 RecA RecA/RadA recombi 94.8 0.065 1.4E-06 57.5 7.0 47 8-54 49-95 (279)
322 cd03115 SRP The signal recogni 94.8 0.13 2.9E-06 51.7 9.0 26 21-46 2-27 (173)
323 TIGR03345 VI_ClpV1 type VI sec 94.8 0.12 2.7E-06 65.1 10.5 27 19-45 596-622 (852)
324 smart00763 AAA_PrkA PrkA AAA d 94.8 0.035 7.6E-07 61.4 5.0 42 2-43 57-102 (361)
325 PF00158 Sigma54_activat: Sigm 94.8 0.12 2.7E-06 51.4 8.5 22 21-42 24-45 (168)
326 PRK14722 flhF flagellar biosyn 94.7 0.1 2.2E-06 58.6 8.4 36 19-54 137-174 (374)
327 cd03247 ABCC_cytochrome_bd The 94.7 0.14 2.9E-06 51.9 8.7 24 20-43 29-52 (178)
328 PRK09270 nucleoside triphospha 94.7 0.044 9.6E-07 58.0 5.3 31 16-46 30-60 (229)
329 PRK12726 flagellar biosynthesi 94.6 0.18 3.9E-06 56.2 10.0 37 18-54 205-241 (407)
330 PF08423 Rad51: Rad51; InterP 94.6 0.058 1.3E-06 57.9 6.1 49 6-54 25-79 (256)
331 PRK00131 aroK shikimate kinase 94.6 0.028 6.2E-07 56.7 3.6 26 19-44 4-29 (175)
332 cd01122 GP4d_helicase GP4d_hel 94.6 0.18 4E-06 54.9 10.2 52 19-76 30-82 (271)
333 cd03222 ABC_RNaseL_inhibitor T 94.6 0.079 1.7E-06 53.3 6.6 24 20-43 26-49 (177)
334 KOG2035 Replication factor C, 94.6 0.34 7.5E-06 50.6 11.1 197 7-220 24-259 (351)
335 TIGR01360 aden_kin_iso1 adenyl 94.6 0.03 6.6E-07 57.3 3.7 26 18-43 2-27 (188)
336 TIGR03346 chaperone_ClpB ATP-d 94.6 0.13 2.8E-06 65.4 10.0 28 19-46 595-622 (852)
337 COG2812 DnaX DNA polymerase II 94.6 0.2 4.2E-06 58.4 10.5 91 100-192 118-212 (515)
338 PRK13947 shikimate kinase; Pro 94.5 0.029 6.3E-07 56.4 3.4 27 21-47 3-29 (171)
339 PRK06547 hypothetical protein; 94.5 0.038 8.2E-07 55.3 4.1 27 17-43 13-39 (172)
340 TIGR00708 cobA cob(I)alamin ad 94.5 0.077 1.7E-06 52.5 6.1 116 20-139 6-140 (173)
341 cd01130 VirB11-like_ATPase Typ 94.5 0.036 7.9E-07 56.5 4.1 93 20-120 26-119 (186)
342 PF10236 DAP3: Mitochondrial r 94.5 0.82 1.8E-05 50.6 15.0 48 150-197 258-306 (309)
343 KOG2123 Uncharacterized conser 94.5 0.0018 3.8E-08 66.8 -5.4 79 365-443 18-99 (388)
344 PF12775 AAA_7: P-loop contain 94.5 0.032 7E-07 60.4 3.8 24 20-43 34-57 (272)
345 PTZ00088 adenylate kinase 1; P 94.5 0.13 2.9E-06 54.0 8.2 22 22-43 9-30 (229)
346 COG5635 Predicted NTPase (NACH 94.5 0.29 6.3E-06 62.1 12.7 191 21-221 224-449 (824)
347 COG0464 SpoVK ATPases of the A 94.4 0.23 5E-06 59.4 11.3 131 17-171 274-425 (494)
348 COG0003 ArsA Predicted ATPase 94.4 0.055 1.2E-06 59.5 5.4 35 19-53 2-36 (322)
349 PF08433 KTI12: Chromatin asso 94.4 0.093 2E-06 56.6 7.0 26 20-45 2-27 (270)
350 PRK12724 flagellar biosynthesi 94.4 0.24 5.2E-06 56.1 10.3 25 19-43 223-247 (432)
351 PLN03187 meiotic recombination 94.3 0.1 2.2E-06 58.1 7.2 49 6-54 113-167 (344)
352 TIGR00150 HI0065_YjeE ATPase, 94.3 0.06 1.3E-06 50.9 4.6 40 4-43 7-46 (133)
353 cd00227 CPT Chloramphenicol (C 94.3 0.039 8.4E-07 55.7 3.6 26 20-45 3-28 (175)
354 cd03278 ABC_SMC_barmotin Barmo 94.2 0.21 4.6E-06 51.4 8.9 21 21-41 24-44 (197)
355 cd02021 GntK Gluconate kinase 94.2 0.19 4.2E-06 49.1 8.4 23 21-43 1-23 (150)
356 PRK14723 flhF flagellar biosyn 94.2 0.44 9.5E-06 58.3 12.8 25 19-43 185-209 (767)
357 CHL00095 clpC Clp protease ATP 94.2 0.22 4.8E-06 63.1 10.8 27 19-45 539-565 (821)
358 TIGR02639 ClpA ATP-dependent C 94.1 0.19 4.2E-06 62.8 10.0 26 19-44 484-509 (731)
359 cd03246 ABCC_Protease_Secretio 94.1 0.12 2.7E-06 51.9 6.9 34 20-54 29-62 (173)
360 cd02028 UMPK_like Uridine mono 94.1 0.053 1.2E-06 54.8 4.2 25 21-45 1-25 (179)
361 PRK00889 adenylylsulfate kinas 94.1 0.066 1.4E-06 54.1 4.9 27 19-45 4-30 (175)
362 KOG2228 Origin recognition com 94.1 0.28 6.1E-06 52.7 9.5 146 20-167 50-217 (408)
363 TIGR02236 recomb_radA DNA repa 94.1 0.19 4.1E-06 56.0 9.0 49 6-54 82-136 (310)
364 TIGR02788 VirB11 P-type DNA tr 94.1 0.079 1.7E-06 58.8 5.9 108 19-139 144-253 (308)
365 PTZ00035 Rad51 protein; Provis 94.0 0.2 4.2E-06 56.1 8.9 38 5-42 104-141 (337)
366 PF14532 Sigma54_activ_2: Sigm 94.0 0.05 1.1E-06 52.5 3.7 24 20-43 22-45 (138)
367 COG2884 FtsE Predicted ATPase 94.0 0.33 7.1E-06 48.0 9.1 54 93-146 147-204 (223)
368 PRK03846 adenylylsulfate kinas 94.0 0.073 1.6E-06 55.0 5.1 38 17-54 22-59 (198)
369 TIGR00959 ffh signal recogniti 94.0 0.22 4.8E-06 57.3 9.4 26 19-44 99-124 (428)
370 PF00437 T2SE: Type II/IV secr 93.9 0.1 2.3E-06 56.8 6.5 116 6-138 114-231 (270)
371 TIGR02655 circ_KaiC circadian 93.9 0.17 3.7E-06 60.0 8.6 51 4-54 248-298 (484)
372 KOG0729 26S proteasome regulat 93.9 0.12 2.6E-06 53.0 6.2 31 19-54 211-241 (435)
373 cd00071 GMPK Guanosine monopho 93.9 0.042 9E-07 52.9 2.8 27 21-47 1-27 (137)
374 PF03308 ArgK: ArgK protein; 93.9 0.11 2.3E-06 54.4 5.9 40 7-46 17-56 (266)
375 TIGR02239 recomb_RAD51 DNA rep 93.9 0.14 3.1E-06 56.7 7.4 36 6-41 83-118 (316)
376 COG4608 AppF ABC-type oligopep 93.9 0.17 3.8E-06 53.2 7.5 123 20-145 40-176 (268)
377 PRK13949 shikimate kinase; Pro 93.9 0.049 1.1E-06 54.5 3.4 24 21-44 3-26 (169)
378 PF00560 LRR_1: Leucine Rich R 93.9 0.022 4.8E-07 35.2 0.6 21 754-774 1-21 (22)
379 KOG0733 Nuclear AAA ATPase (VC 93.9 0.54 1.2E-05 54.5 11.7 127 20-170 546-693 (802)
380 cd02024 NRK1 Nicotinamide ribo 93.9 0.042 9.1E-07 55.6 2.9 23 21-43 1-23 (187)
381 PRK10416 signal recognition pa 93.8 0.24 5.3E-06 54.8 9.1 29 18-46 113-141 (318)
382 cd01125 repA Hexameric Replica 93.8 0.41 8.9E-06 51.0 10.6 24 21-44 3-26 (239)
383 cd02025 PanK Pantothenate kina 93.8 0.043 9.3E-07 57.5 2.9 24 21-44 1-24 (220)
384 cd03216 ABC_Carb_Monos_I This 93.8 0.12 2.5E-06 51.5 5.9 34 20-54 27-60 (163)
385 PRK06217 hypothetical protein; 93.8 0.05 1.1E-06 55.4 3.3 24 21-44 3-26 (183)
386 PLN03186 DNA repair protein RA 93.8 0.14 3.1E-06 57.1 7.0 49 6-54 110-164 (342)
387 cd02020 CMPK Cytidine monophos 93.8 0.05 1.1E-06 53.0 3.2 24 21-44 1-24 (147)
388 PRK10751 molybdopterin-guanine 93.7 0.1 2.2E-06 51.9 5.2 29 17-45 4-32 (173)
389 COG1102 Cmk Cytidylate kinase 93.7 0.055 1.2E-06 51.8 3.1 27 21-47 2-28 (179)
390 cd02023 UMPK Uridine monophosp 93.7 0.044 9.6E-07 56.6 2.8 23 21-43 1-23 (198)
391 TIGR02782 TrbB_P P-type conjug 93.7 0.28 6.1E-06 53.9 9.2 88 20-120 133-223 (299)
392 COG1419 FlhF Flagellar GTP-bin 93.7 0.3 6.5E-06 54.5 9.2 36 19-54 203-240 (407)
393 PRK13948 shikimate kinase; Pro 93.7 0.054 1.2E-06 54.6 3.3 29 18-46 9-37 (182)
394 PRK12727 flagellar biosynthesi 93.7 0.15 3.3E-06 59.2 7.3 27 19-45 350-376 (559)
395 PF03266 NTPase_1: NTPase; In 93.6 0.076 1.6E-06 52.9 4.2 24 22-45 2-25 (168)
396 cd03283 ABC_MutS-like MutS-lik 93.6 0.36 7.8E-06 49.7 9.4 23 20-42 26-48 (199)
397 PF02374 ArsA_ATPase: Anion-tr 93.6 0.069 1.5E-06 58.9 4.3 34 20-53 2-35 (305)
398 COG0467 RAD55 RecA-superfamily 93.6 0.15 3.3E-06 55.2 6.9 49 6-54 10-58 (260)
399 PRK13946 shikimate kinase; Pro 93.6 0.057 1.2E-06 55.0 3.3 26 19-44 10-35 (184)
400 COG1936 Predicted nucleotide k 93.6 0.053 1.1E-06 52.7 2.8 20 21-40 2-21 (180)
401 TIGR02322 phosphon_PhnN phosph 93.6 0.059 1.3E-06 54.6 3.4 25 20-44 2-26 (179)
402 cd00464 SK Shikimate kinase (S 93.6 0.061 1.3E-06 52.9 3.4 23 22-44 2-24 (154)
403 TIGR01420 pilT_fam pilus retra 93.5 0.21 4.6E-06 56.3 8.1 106 20-138 123-229 (343)
404 PF00625 Guanylate_kin: Guanyl 93.5 0.076 1.7E-06 54.0 4.0 35 19-53 2-36 (183)
405 PF13306 LRR_5: Leucine rich r 93.4 0.28 6E-06 46.4 7.7 13 587-599 54-66 (129)
406 PRK13975 thymidylate kinase; P 93.4 0.071 1.5E-06 55.0 3.9 26 20-45 3-28 (196)
407 PRK10463 hydrogenase nickel in 93.4 0.14 3.1E-06 55.1 6.1 37 16-52 101-137 (290)
408 PRK13768 GTPase; Provisional 93.4 0.094 2E-06 56.3 4.8 35 19-53 2-36 (253)
409 PF13306 LRR_5: Leucine rich r 93.4 0.28 6E-06 46.5 7.6 83 357-441 3-90 (129)
410 TIGR01425 SRP54_euk signal rec 93.4 0.4 8.8E-06 54.8 10.0 28 19-46 100-127 (429)
411 cd03281 ABC_MSH5_euk MutS5 hom 93.4 0.27 5.9E-06 51.2 8.1 23 19-41 29-51 (213)
412 PF03969 AFG1_ATPase: AFG1-lik 93.4 0.15 3.2E-06 57.5 6.4 102 18-139 61-167 (362)
413 PRK14526 adenylate kinase; Pro 93.3 0.23 5E-06 51.6 7.3 22 22-43 3-24 (211)
414 PF03205 MobB: Molybdopterin g 93.3 0.094 2E-06 50.5 4.2 35 20-54 1-36 (140)
415 PRK05057 aroK shikimate kinase 93.3 0.071 1.5E-06 53.6 3.5 25 20-44 5-29 (172)
416 COG0396 sufC Cysteine desulfur 93.3 0.22 4.8E-06 50.8 6.9 60 91-150 152-215 (251)
417 TIGR01069 mutS2 MutS2 family p 93.3 0.24 5.3E-06 61.7 8.8 180 19-221 322-522 (771)
418 PRK11034 clpA ATP-dependent Cl 93.3 0.32 7E-06 60.2 9.7 26 19-44 488-513 (758)
419 COG0703 AroK Shikimate kinase 93.2 0.075 1.6E-06 52.2 3.3 27 21-47 4-30 (172)
420 PRK07132 DNA polymerase III su 93.2 1.5 3.2E-05 48.1 13.6 169 4-201 4-186 (299)
421 KOG1532 GTPase XAB1, interacts 93.2 0.091 2E-06 54.4 3.9 32 17-48 17-48 (366)
422 CHL00206 ycf2 Ycf2; Provisiona 93.2 1.1 2.5E-05 59.2 14.3 25 19-43 1630-1654(2281)
423 TIGR03881 KaiC_arch_4 KaiC dom 93.2 0.16 3.5E-06 53.8 6.1 50 5-54 6-55 (229)
424 KOG1514 Origin recognition com 93.2 0.28 6.1E-06 57.8 8.3 125 3-136 403-546 (767)
425 PRK01184 hypothetical protein; 93.2 0.23 5.1E-06 50.5 7.1 22 20-42 2-23 (184)
426 PRK12339 2-phosphoglycerate ki 93.1 0.085 1.8E-06 54.1 3.7 25 19-43 3-27 (197)
427 cd00267 ABC_ATPase ABC (ATP-bi 93.1 0.19 4E-06 49.7 6.1 114 20-144 26-145 (157)
428 PRK05439 pantothenate kinase; 93.1 0.15 3.2E-06 55.9 5.6 28 17-44 84-111 (311)
429 TIGR01287 nifH nitrogenase iro 93.1 0.09 2E-06 57.5 4.1 27 20-46 1-27 (275)
430 COG0194 Gmk Guanylate kinase [ 93.0 0.1 2.2E-06 51.6 3.9 25 19-43 4-28 (191)
431 PRK14738 gmk guanylate kinase; 93.0 0.069 1.5E-06 55.4 3.0 28 15-42 9-36 (206)
432 TIGR00554 panK_bact pantothena 93.0 0.15 3.3E-06 55.4 5.6 28 17-44 60-87 (290)
433 TIGR03575 selen_PSTK_euk L-ser 93.0 0.2 4.3E-06 55.6 6.5 23 22-44 2-24 (340)
434 TIGR03263 guanyl_kin guanylate 92.9 0.072 1.6E-06 54.1 2.9 24 20-43 2-25 (180)
435 PF00154 RecA: recA bacterial 92.9 0.24 5.1E-06 54.4 7.0 98 7-113 40-143 (322)
436 KOG0739 AAA+-type ATPase [Post 92.9 0.52 1.1E-05 49.6 8.9 28 19-46 166-193 (439)
437 COG1703 ArgK Putative periplas 92.9 0.17 3.6E-06 53.7 5.5 47 7-53 39-85 (323)
438 TIGR01351 adk adenylate kinase 92.9 0.35 7.6E-06 50.4 8.1 22 22-43 2-23 (210)
439 COG3640 CooC CO dehydrogenase 92.9 0.16 3.5E-06 51.9 5.1 26 21-46 2-27 (255)
440 cd03282 ABC_MSH4_euk MutS4 hom 92.8 0.08 1.7E-06 54.7 3.1 23 19-41 29-51 (204)
441 PRK06002 fliI flagellum-specif 92.8 0.22 4.9E-06 57.0 6.8 23 20-42 166-188 (450)
442 PLN02318 phosphoribulokinase/u 92.8 0.12 2.7E-06 60.4 4.8 32 12-43 58-89 (656)
443 PRK03731 aroL shikimate kinase 92.8 0.093 2E-06 52.7 3.4 24 21-44 4-27 (171)
444 TIGR01313 therm_gnt_kin carboh 92.8 0.074 1.6E-06 53.0 2.7 22 22-43 1-22 (163)
445 TIGR00176 mobB molybdopterin-g 92.8 0.12 2.5E-06 50.9 4.0 26 21-46 1-26 (155)
446 cd03217 ABC_FeS_Assembly ABC-t 92.8 0.24 5.1E-06 51.2 6.5 23 20-42 27-49 (200)
447 PRK14529 adenylate kinase; Pro 92.7 0.41 9E-06 49.9 8.2 89 22-119 3-95 (223)
448 PRK09280 F0F1 ATP synthase sub 92.7 0.22 4.7E-06 57.4 6.6 93 20-114 145-251 (463)
449 KOG3347 Predicted nucleotide k 92.7 0.095 2.1E-06 49.3 3.0 23 21-43 9-31 (176)
450 COG2842 Uncharacterized ATPase 92.7 0.56 1.2E-05 50.0 9.1 131 19-172 94-226 (297)
451 PRK14530 adenylate kinase; Pro 92.7 0.095 2.1E-06 54.9 3.5 23 21-43 5-27 (215)
452 cd04121 Rab40 Rab40 subfamily. 92.7 0.41 9E-06 48.9 8.0 22 20-41 7-28 (189)
453 cd02034 CooC The accessory pro 92.6 0.15 3.3E-06 47.2 4.4 32 22-53 2-33 (116)
454 PF00006 ATP-synt_ab: ATP synt 92.6 0.16 3.6E-06 52.6 5.0 25 20-44 16-40 (215)
455 COG0488 Uup ATPase components 92.6 0.26 5.6E-06 58.3 7.2 54 96-155 452-511 (530)
456 cd01983 Fer4_NifH The Fer4_Nif 92.6 0.13 2.8E-06 45.7 3.8 25 21-45 1-25 (99)
457 PRK15453 phosphoribulokinase; 92.6 0.16 3.6E-06 54.1 5.0 29 17-45 3-31 (290)
458 cd02117 NifH_like This family 92.5 0.13 2.8E-06 53.8 4.2 27 20-46 1-27 (212)
459 PRK06761 hypothetical protein; 92.5 0.14 3.1E-06 55.1 4.6 27 20-46 4-30 (282)
460 TIGR03878 thermo_KaiC_2 KaiC d 92.5 0.17 3.8E-06 54.5 5.3 37 18-54 35-71 (259)
461 smart00072 GuKc Guanylate kina 92.5 0.1 2.3E-06 53.1 3.5 30 19-48 2-31 (184)
462 PRK04182 cytidylate kinase; Pr 92.5 0.11 2.3E-06 52.7 3.6 24 21-44 2-25 (180)
463 TIGR00455 apsK adenylylsulfate 92.5 0.43 9.4E-06 48.5 8.0 27 18-44 17-43 (184)
464 PRK10078 ribose 1,5-bisphospho 92.5 0.09 2E-06 53.7 3.0 25 20-44 3-27 (186)
465 PRK14493 putative bifunctional 92.5 0.14 3E-06 55.3 4.5 34 20-54 2-35 (274)
466 smart00534 MUTSac ATPase domai 92.5 0.055 1.2E-06 55.2 1.3 21 21-41 1-21 (185)
467 cd00046 DEXDc DEAD-like helica 92.5 0.49 1.1E-05 45.1 8.0 34 21-54 2-37 (144)
468 PF13245 AAA_19: Part of AAA d 92.4 0.22 4.8E-06 42.1 4.7 24 20-43 11-35 (76)
469 PRK06995 flhF flagellar biosyn 92.4 0.63 1.4E-05 54.2 10.0 26 19-44 256-281 (484)
470 COG4240 Predicted kinase [Gene 92.4 0.66 1.4E-05 47.0 8.6 39 16-54 47-86 (300)
471 PLN02348 phosphoribulokinase 92.4 0.16 3.4E-06 57.0 4.8 30 16-45 46-75 (395)
472 PRK13230 nitrogenase reductase 92.4 0.14 3E-06 56.1 4.6 34 20-53 2-35 (279)
473 cd01672 TMPK Thymidine monopho 92.4 0.24 5.3E-06 51.0 6.1 25 21-45 2-26 (200)
474 PRK00300 gmk guanylate kinase; 92.4 0.098 2.1E-06 54.4 3.1 25 19-43 5-29 (205)
475 cd00984 DnaB_C DnaB helicase C 92.4 0.57 1.2E-05 50.1 9.2 61 8-75 3-64 (242)
476 PRK05922 type III secretion sy 92.4 0.27 5.8E-06 56.3 6.7 24 20-43 158-181 (434)
477 PRK14721 flhF flagellar biosyn 92.4 0.51 1.1E-05 54.0 9.0 24 19-42 191-214 (420)
478 COG0529 CysC Adenylylsulfate k 92.4 0.19 4E-06 49.1 4.6 37 17-53 21-57 (197)
479 PF00142 Fer4_NifH: 4Fe-4S iro 92.4 0.16 3.4E-06 53.3 4.4 34 20-53 1-34 (273)
480 KOG2170 ATPase of the AAA+ sup 92.4 0.27 5.9E-06 52.0 6.2 38 6-43 96-134 (344)
481 PRK12597 F0F1 ATP synthase sub 92.4 0.26 5.7E-06 56.9 6.7 92 20-114 144-250 (461)
482 TIGR00073 hypB hydrogenase acc 92.3 0.28 6E-06 51.0 6.4 30 16-45 19-48 (207)
483 PRK13236 nitrogenase reductase 92.3 0.17 3.7E-06 55.8 5.1 30 17-46 4-33 (296)
484 PF13504 LRR_7: Leucine rich r 92.3 0.079 1.7E-06 30.3 1.2 16 754-769 2-17 (17)
485 PRK14737 gmk guanylate kinase; 92.3 0.12 2.6E-06 52.6 3.5 26 18-43 3-28 (186)
486 PLN02459 probable adenylate ki 92.3 0.52 1.1E-05 50.1 8.3 91 22-120 32-128 (261)
487 PRK15455 PrkA family serine pr 92.2 0.15 3.3E-06 59.4 4.6 44 1-44 81-128 (644)
488 PRK09435 membrane ATPase/prote 92.2 0.29 6.2E-06 54.3 6.6 31 16-46 53-83 (332)
489 TIGR01039 atpD ATP synthase, F 92.1 0.29 6.3E-06 56.1 6.6 93 20-114 144-250 (461)
490 COG0465 HflB ATP-dependent Zn 92.1 0.85 1.8E-05 54.1 10.5 151 19-196 183-357 (596)
491 PF13481 AAA_25: AAA domain; P 92.1 0.71 1.5E-05 47.3 9.1 25 20-44 33-57 (193)
492 PRK14527 adenylate kinase; Pro 92.1 0.14 3E-06 52.5 3.7 26 18-43 5-30 (191)
493 PLN02200 adenylate kinase fami 92.0 0.14 3.1E-06 54.1 3.8 26 18-43 42-67 (234)
494 PRK13232 nifH nitrogenase redu 92.0 0.16 3.4E-06 55.5 4.3 34 20-53 2-35 (273)
495 COG1124 DppF ABC-type dipeptid 92.0 0.15 3.2E-06 52.5 3.7 22 20-41 34-55 (252)
496 COG2401 ABC-type ATPase fused 92.0 0.37 8.1E-06 53.1 6.8 53 92-149 516-578 (593)
497 PRK08533 flagellar accessory p 92.0 0.16 3.4E-06 53.8 4.1 49 6-54 11-59 (230)
498 PF13086 AAA_11: AAA domain; P 91.9 0.28 6.1E-06 51.9 6.1 36 4-43 6-41 (236)
499 cd03116 MobB Molybdenum is an 91.9 0.21 4.6E-06 49.2 4.6 27 20-46 2-28 (159)
500 TIGR02173 cyt_kin_arch cytidyl 91.9 0.14 3.1E-06 51.3 3.6 23 21-43 2-24 (171)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=1e-100 Score=985.01 Aligned_cols=881 Identities=32% Similarity=0.529 Sum_probs=655.4
Q ss_pred ChhHHHHHHHhhcCCCCCeEEEEEEccCCCcHHHHHHHHHHHhcccccceEEEeec--hhh---hcc------CChHHHH
Q 001458 1 MDSRCEKLRFLMDSGSSDVRMIGICGMGGLGKTTIARVVYDLISHEFEASGFLDNV--REI---SSK------GGLVSLQ 69 (1074)
Q Consensus 1 ~~~~~~~l~~lL~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~--~~~---s~~------~~~~~l~ 69 (1074)
||+++++|..+|..+.+++++|||||||||||||||+++|+++..+|++.+|+.+. +.. ... .....++
T Consensus 189 ~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~~~~~~~~~~~~~~~~~~~l~ 268 (1153)
T PLN03210 189 IEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISKSMEIYSSANPDDYNMKLHLQ 268 (1153)
T ss_pred hHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeeccccccchhhcccccccccchhHHHH
Confidence 57899999999988888899999999999999999999999999999999998642 111 100 1134677
Q ss_pred HHHHHHHhcccCCccccccchHHHHHhhhCCCeEEEEEcCCCChHHHHHHhcCCCCCCCCCEEEEEeCChhhhhhcCCCc
Q 001458 70 RQLLSQLLKLADNSIWNVFDGIDMLGSRLQRKKVLLVIDDVVDVKQLQSLAGNREWFGSGSRIIITSRDEHLLKTHGVDE 149 (1074)
Q Consensus 70 ~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~~kr~LlVLDdv~~~~~l~~l~~~~~~~~~gs~IiiTTR~~~v~~~~~~~~ 149 (1074)
++++.+++...+..... ...++++|++||+||||||||+.++|+.+++...|+++||+||||||+++++..+++++
T Consensus 269 ~~~l~~il~~~~~~~~~----~~~~~~~L~~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTTrd~~vl~~~~~~~ 344 (1153)
T PLN03210 269 RAFLSEILDKKDIKIYH----LGAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKDKHFLRAHGIDH 344 (1153)
T ss_pred HHHHHHHhCCCCcccCC----HHHHHHHHhCCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEeCcHHHHHhcCCCe
Confidence 78888876554332221 35788999999999999999999999999998899999999999999999998888889
Q ss_pred eecCCCCChHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCCchHHHHHHhhcCCCCHHHHHHHHHHHhcCCCchhHH
Q 001458 150 VYKPHGLNYDEALQLFNMKAFKTYQPLQECVQLSARIIRYAGGLPLALEVLGSFLSGRSVDEWRSTLERLEIEPPSEILD 229 (1074)
Q Consensus 150 ~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~g~~L~~~~~~~w~~~l~~l~~~~~~~i~~ 229 (1074)
+|+|+.+++++|++||+++||++..+.+++++++++|+++|+|+||||+++|+.|++++..+|+.++++++..++..|.+
T Consensus 345 ~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~~~~W~~~l~~L~~~~~~~I~~ 424 (1153)
T PLN03210 345 IYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKEDWMDMLPRLRNGLDGKIEK 424 (1153)
T ss_pred EEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHhCccHHHHH
Confidence 99999999999999999999998878888999999999999999999999999999999999999999999988889999
Q ss_pred HHhhccccCcH-hhhhhheeeecccCCCCHHHHHHHhhhCCCCcccchhhhhcccceEEeCCeEehHHHHHHHHHHHhhc
Q 001458 230 ILQISFDGLQE-LEKKIFLDIACFFKGNDRDYVTNFLEGCGFHPVIGIRVLIEKCLITVHNNTLWMHDLLQELGQQIVQR 308 (1074)
Q Consensus 230 ~l~~sy~~L~~-~~k~~fl~~a~f~~~~~~~~l~~~~~~~g~~~~~~i~~L~~~sLi~~~~~~~~mHdli~~~~~~i~~~ 308 (1074)
+|++||++|++ .+|.||++|||||.+++.+++..++..+++....+++.|+++|||+...+++.|||++|+||++++++
T Consensus 425 ~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~~v~~~l~~~~~~~~~~l~~L~~ksLi~~~~~~~~MHdLl~~~~r~i~~~ 504 (1153)
T PLN03210 425 TLRVSYDGLNNKKDKAIFRHIACLFNGEKVNDIKLLLANSDLDVNIGLKNLVDKSLIHVREDIVEMHSLLQEMGKEIVRA 504 (1153)
T ss_pred HHHHhhhccCccchhhhhheehhhcCCCCHHHHHHHHHhcCCCchhChHHHHhcCCEEEcCCeEEhhhHHHHHHHHHHHh
Confidence 99999999986 59999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred cCccccCccccccChhhHHHHhccCCCcccEEEEEecCCCchhhhhcccChHHHhCCCCCceEEecCc----------cC
Q 001458 309 QSPEELGKRSRLWKEEEVCHVLTESTGTELVEGIVLDNYHHENEVYLCASAKAFSKMTNLRLLKICNL----------QL 378 (1074)
Q Consensus 309 ~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~f~~l~~Lr~L~l~~~----------~l 378 (1074)
++ .+|++|+|+|.++|+++++.+++|++.+++|+++..... ++. +...+|.+|++|++|.+.++ ++
T Consensus 505 ~~-~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~-~~~--i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~l 580 (1153)
T PLN03210 505 QS-NEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEID-ELH--IHENAFKGMRNLLFLKFYTKKWDQKKEVRWHL 580 (1153)
T ss_pred hc-CCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccc-eee--ecHHHHhcCccccEEEEecccccccccceeec
Confidence 87 789999999999999999999999999999999988775 555 89999999999999999654 36
Q ss_pred CCCccccCcCceEEEecCCCCCCCCCCCCCCCceEEEcCcCCcccccccccCCCCCcEEEccCCCCCCCCCCCCCCCCCc
Q 001458 379 PNGLEYLSNRLRLLGWRGYPLKFLPSNLQMDKTIEIYMCYSRIGELWKGIKHLDKLKVMILSHSENLIRMPDFTGAPNLE 458 (1074)
Q Consensus 379 ~~~~~~l~~~L~~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~l~~L~ 458 (1074)
++++..++.+||.|+|.+|+++.+|..+.+.+|++|++++|++..+|.++..+++|+.|+|+++..+..+|+++.+++|+
T Consensus 581 p~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le 660 (1153)
T PLN03210 581 PEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLE 660 (1153)
T ss_pred CcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCccccCCccc
Confidence 77888899999999999999999999999999999999999999999999999999999999998889999999999999
Q ss_pred EEEecCcccccccCcchhcCCCccEEeccCCCCCCcCCccccccccCceecCcCcccccCCCCCcEEeccCCCCCCcCch
Q 001458 459 KLILEGCTRLYEIHPSLLLHNKLIILNMKDCTSLITLPGKILMKSLEKLNLKSLPTTISGLKCLSTLDVSGDLKFREFPE 538 (1074)
Q Consensus 459 ~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~l~~~l~~l~~L~~L~L~~~~~~~~~~~ 538 (1074)
+|+|++|..+..+|.+++.+++|+.|++++|..+..+|..+ ++++|+.|++++|.....+|.
T Consensus 661 ~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i------------------~l~sL~~L~Lsgc~~L~~~p~ 722 (1153)
T PLN03210 661 TLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI------------------NLKSLYRLNLSGCSRLKSFPD 722 (1153)
T ss_pred EEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC------------------CCCCCCEEeCCCCCCcccccc
Confidence 99999999999999999999999999999999888877644 345666666688877777775
Q ss_pred hhhcCCCccEEEccCcCCccCchhhhcCCCCCEEeccCCCCCccccccccCCCCCCEEEecCCCCCCccchhhcCCCCCC
Q 001458 539 IVEHMEHLSELHLEGTAIRGLPLSIELLSGLVLLNLKNCRSLEILPVTVSNLKCLRSLKLSGCSKLKKFPEIVRSMKDLS 618 (1074)
Q Consensus 539 ~l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~Ls~~~~~~~~p~~~~~l~~L~ 618 (1074)
. ..+|+.|++++|.+..+|..+ .+++|+.|.+.++..... +..+.. ..+...
T Consensus 723 ~---~~nL~~L~L~~n~i~~lP~~~-~l~~L~~L~l~~~~~~~l-~~~~~~----------------l~~~~~------- 774 (1153)
T PLN03210 723 I---STNISWLDLDETAIEEFPSNL-RLENLDELILCEMKSEKL-WERVQP----------------LTPLMT------- 774 (1153)
T ss_pred c---cCCcCeeecCCCccccccccc-cccccccccccccchhhc-cccccc----------------cchhhh-------
Confidence 4 457888999999888888654 455666666554332110 000000 000011
Q ss_pred EEEcCCCcccccCcchhccCCCCEeecCCCCCCccccchhcccCCCCEEEccCCcCCCcCcccccCCCCccEEEcCCCCC
Q 001458 619 ELFLDGTSIKEVPSSIELLTKLELLNLSDCKNLVRLPSSIIALKSLKTLNLSGCFKLENVPETLGQIESLEELDISGTAV 698 (1074)
Q Consensus 619 ~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~L~~c~~l~~~p~~l~~l~~L~~L~L~~n~i 698 (1074)
..+++|+.|+|++|.....+|..+.++++|+.|+|++|..++.+|..+ .+++|+.|++++|..
T Consensus 775 ----------------~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~ 837 (1153)
T PLN03210 775 ----------------MLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSR 837 (1153)
T ss_pred ----------------hccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCc
Confidence 112344455555554444455555555555555555554444444332 334444444443321
Q ss_pred CCCCCcccccccccccccccccCCCCCCCCCccEEecCCCCCCCCCCccccCCCCCCCeEecCCC-cCcccCccccccCC
Q 001458 699 PHSTSWYSYIPINLMRKSVALKLPSLSGLCSLRKLNLTDCNLMEGALPSDIGNLCSLKELYLSKN-SFVSLPTSITHLSK 777 (1074)
Q Consensus 699 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~~~~~~~p~~l~~l~~L~~L~Ls~n-~l~~lp~~i~~l~~ 777 (1074)
... +|. ..++|+.|+|++|.+. .+|..+..+++|+.|+|++| +++.+|..+..+++
T Consensus 838 L~~-------------------~p~--~~~nL~~L~Ls~n~i~--~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~ 894 (1153)
T PLN03210 838 LRT-------------------FPD--ISTNISDLNLSRTGIE--EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKH 894 (1153)
T ss_pred ccc-------------------ccc--cccccCEeECCCCCCc--cChHHHhcCCCCCEEECCCCCCcCccCcccccccC
Confidence 000 111 1235566666666553 36666666667777777664 56666666666777
Q ss_pred CCEeeccCCcCCCcCC--CCCCCcceEeecCccccccchhhhccccCccccccccchhhhcCCchhHHHHHHHHHHhhcc
Q 001458 778 LLNIELEDCKRLQSLP--QLPPNIRQVRVNGCASLVTLLDALKLCKSDSTMIACLDSLKLLGNKSLAFSMLREYLEAVSN 855 (1074)
Q Consensus 778 L~~L~L~~c~~L~~lp--~lp~sL~~L~i~~C~~L~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~~ 855 (1074)
|+.|++++|+.|..++ ..|.++. .+.++. ...+|. .....|.+|++.-.. . ++ ..
T Consensus 895 L~~L~l~~C~~L~~~~l~~~~~~~~--~~~~n~-~~~~p~-----~~~l~f~nC~~L~~~--------a----~l---~~ 951 (1153)
T PLN03210 895 LETVDFSDCGALTEASWNGSPSEVA--MATDNI-HSKLPS-----TVCINFINCFNLDQE--------A----LL---QQ 951 (1153)
T ss_pred CCeeecCCCcccccccCCCCchhhh--hhcccc-cccCCc-----hhccccccccCCCch--------h----hh---cc
Confidence 7777777776665443 2222111 111110 001110 011345566543110 0 11 11
Q ss_pred cccceEEEcCCCCCCCCccccCCCcEEE-EEcCCCCcCCCceEEEEEEEEEeeecCCCCCCCCCCCCCceeeEeeCceee
Q 001458 856 TRQHLSVVVPGSEIPEWFMYQNEGSSIT-VTRPSNLYNKKKLVGYAICCVFHVLKNSRGNNCFGSYPTHQLNCHIGHGIY 934 (1074)
Q Consensus 856 ~~~~~~~~~pg~~iP~wf~~q~~g~si~-~~lp~~~~~~~~~~g~~~c~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 934 (1074)
......+++||.++|+||.||+.|++++ |.+|+.|+ ...|.||++|+|+++...+ ... ....+++.|..
T Consensus 952 ~~~~~~~~l~g~evp~~f~hr~~g~sl~~i~l~~~~~-~~~~~~f~~c~v~~~~~~~--~~~--~~~~~~~~c~~----- 1021 (1153)
T PLN03210 952 QSIFKQLILSGEEVPSYFTHRTTGASLTNIPLLHISP-CQPFFRFRACAVVDSESFF--IIS--VSFDIQVCCRF----- 1021 (1153)
T ss_pred cccceEEECCCccCchhccCCcccceeeeeccCCccc-CCCccceEEEEEEecCccc--cCC--CceeEEEEEEE-----
Confidence 1223456899999999999999999998 99999998 7789999999999872221 110 01134445542
Q ss_pred ccCcccCCCCCCCCeEEEEEEeccccc--cccccccCCCC---CCccceEEEEEeeccC-CceEEEEeeeEEEeeccchh
Q 001458 935 GIGFRDKFGQAGSDHLWLLYLSRQTCY--DIRLPLESNLE---PFESNHVNVSFEPWLG-QGLEVKMCGLHPVYMDEVEE 1008 (1074)
Q Consensus 935 ~~~~~~~~~~~~~~h~~~~~~~~~~~~--~~~~~~~~~~~---~~~~~~~~~~f~~~~~-~~~~v~~cG~~~~y~~~~~~ 1008 (1074)
.....+.+.....+|+|+.|.....+. +...++...+. ...++|+.+.|+.... ..++||+||||++|+++..+
T Consensus 1022 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~cg~~~~~~~~~~~ 1101 (1153)
T PLN03210 1022 IDRLGNHFDSPYQPHVFSVTKKGSHLVIFDCCFPLNEDNAPLAELNYDHVDIQFRLTNKNSQLKLKGCGIRLSEDDSSLN 1101 (1153)
T ss_pred ECCCCCccccCCCceeEeeeccccceEEecccccccccccchhccCCceeeEEEEEecCCCCeEEEeeeEEEeccCCCcc
Confidence 121111111246678887776654321 11111111111 1257888888865332 34799999999999766443
No 2
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=8.6e-60 Score=572.33 Aligned_cols=639 Identities=27% Similarity=0.359 Sum_probs=420.2
Q ss_pred hhHHHHHHHhhcCCCCCeEEEEEEccCCCcHHHHHHHHHHH---hcccccceEEEeechhhhccCChHHHHHHHHHHHhc
Q 001458 2 DSRCEKLRFLMDSGSSDVRMIGICGMGGLGKTTIARVVYDL---ISHEFEASGFLDNVREISSKGGLVSLQRQLLSQLLK 78 (1074)
Q Consensus 2 ~~~~~~l~~lL~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~---~~~~F~~~~~~~~~~~~s~~~~~~~l~~~ll~~l~~ 78 (1074)
|.-++++...|..+ +..+|||+||||+||||||++++|+ ++++|+.++|+. +|..+...+++++|+..+..
T Consensus 164 e~~~~kl~~~L~~d--~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~----VSk~f~~~~iq~~Il~~l~~ 237 (889)
T KOG4658|consen 164 ETMLEKLWNRLMED--DVGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVV----VSKEFTTRKIQQTILERLGL 237 (889)
T ss_pred HHHHHHHHHHhccC--CCCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEE----EcccccHHhHHHHHHHHhcc
Confidence 45567777777633 3499999999999999999999983 679999999999 88889999999999998755
Q ss_pred ccCCc-cccccchHHHHHhhhCCCeEEEEEcCCCChHHHHHHhcCCCCCCCCCEEEEEeCChhhhhh-cCCCceecCCCC
Q 001458 79 LADNS-IWNVFDGIDMLGSRLQRKKVLLVIDDVVDVKQLQSLAGNREWFGSGSRIIITSRDEHLLKT-HGVDEVYKPHGL 156 (1074)
Q Consensus 79 ~~~~~-~~~~~~~~~~i~~~L~~kr~LlVLDdv~~~~~l~~l~~~~~~~~~gs~IiiTTR~~~v~~~-~~~~~~~~l~~L 156 (1074)
..... .....+.+..|.+.|++|||||||||||+..+|+.+..+++....||+|++|||++.|+.. +++...++++.|
T Consensus 238 ~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L 317 (889)
T KOG4658|consen 238 LDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVECL 317 (889)
T ss_pred CCcccchhhHHHHHHHHHHHhccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCcccccccc
Confidence 32222 2234677889999999999999999999999999999998887889999999999999998 888899999999
Q ss_pred ChHHHHHHHHHhhhcCC-CCChhHHHHHHHHHHHhCCCchHHHHHHhhcCCC-CHHHHHHHHHHHhcC-------CCchh
Q 001458 157 NYDEALQLFNMKAFKTY-QPLQECVQLSARIIRYAGGLPLALEVLGSFLSGR-SVDEWRSTLERLEIE-------PPSEI 227 (1074)
Q Consensus 157 ~~~ea~~Lf~~~a~~~~-~~~~~~~~~~~~i~~~~~GlPLal~~~g~~L~~~-~~~~w~~~l~~l~~~-------~~~~i 227 (1074)
+.+|||+||+++||... ...+...++|++++++|+|+|||+.++|+.|+.+ +..+|+.+++.+.+. ..+.|
T Consensus 318 ~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i 397 (889)
T KOG4658|consen 318 TPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESI 397 (889)
T ss_pred CccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhh
Confidence 99999999999999763 3445689999999999999999999999999984 678999999988765 13578
Q ss_pred HHHHhhccccCcHhhhhhheeeecccCCC--CHHHHHHHhhhCCCCc------------ccchhhhhcccceEEeC----
Q 001458 228 LDILQISFDGLQELEKKIFLDIACFFKGN--DRDYVTNFLEGCGFHP------------VIGIRVLIEKCLITVHN---- 289 (1074)
Q Consensus 228 ~~~l~~sy~~L~~~~k~~fl~~a~f~~~~--~~~~l~~~~~~~g~~~------------~~~i~~L~~~sLi~~~~---- 289 (1074)
..++++|||.||++.|.||+|||.||+++ +++.++..|+|+||+. ...+..|++++|+....
T Consensus 398 ~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~ 477 (889)
T KOG4658|consen 398 LPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGR 477 (889)
T ss_pred HHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccccc
Confidence 99999999999999999999999999998 6788999999999874 23488999999998875
Q ss_pred -CeEehHHHHHHHHHHHhhccCccccCccccccChhhHHHHhccCCCcccEEEEEecCCCchhhhhcccChHHHhCCCCC
Q 001458 290 -NTLWMHDLLQELGQQIVQRQSPEELGKRSRLWKEEEVCHVLTESTGTELVEGIVLDNYHHENEVYLCASAKAFSKMTNL 368 (1074)
Q Consensus 290 -~~~~mHdli~~~~~~i~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~f~~l~~L 368 (1074)
.++.|||++||||.+++.+....... .+.-+..... .
T Consensus 478 ~~~~kmHDvvRe~al~ias~~~~~~e~-------------------------~iv~~~~~~~-~---------------- 515 (889)
T KOG4658|consen 478 KETVKMHDVVREMALWIASDFGKQEEN-------------------------QIVSDGVGLS-E---------------- 515 (889)
T ss_pred eeEEEeeHHHHHHHHHHhccccccccc-------------------------eEEECCcCcc-c----------------
Confidence 68999999999999998854311110 0000000000 0
Q ss_pred ceEEecCccCCCCccccCcCceEEEecCCCCCCCCCCCCCCCceEEEcCcCCcccccccccCCCCCcEEEccCCCCCCCC
Q 001458 369 RLLKICNLQLPNGLEYLSNRLRLLGWRGYPLKFLPSNLQMDKTIEIYMCYSRIGELWKGIKHLDKLKVMILSHSENLIRM 448 (1074)
Q Consensus 369 r~L~l~~~~l~~~~~~l~~~L~~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~~~~~~~~ 448 (1074)
.++. ......|.+.+.++.+..++...
T Consensus 516 ---------~~~~--~~~~~~rr~s~~~~~~~~~~~~~------------------------------------------ 542 (889)
T KOG4658|consen 516 ---------IPQV--KSWNSVRRMSLMNNKIEHIAGSS------------------------------------------ 542 (889)
T ss_pred ---------cccc--cchhheeEEEEeccchhhccCCC------------------------------------------
Confidence 0000 00012333333333333333222
Q ss_pred CCCCCCCCCcEEEecCccc-ccccCcchhcCCCccEEeccCCCCCCcCCccccccccCceecCcCcccccCCCCCcEEec
Q 001458 449 PDFTGAPNLEKLILEGCTR-LYEIHPSLLLHNKLIILNMKDCTSLITLPGKILMKSLEKLNLKSLPTTISGLKCLSTLDV 527 (1074)
Q Consensus 449 ~~~~~l~~L~~L~L~~~~~-l~~~~~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~l~~~l~~l~~L~~L~L 527 (1074)
..++|++|-+.++.. +..++.. .+..++.|+.|||
T Consensus 543 ----~~~~L~tLll~~n~~~l~~is~~----------------------------------------ff~~m~~LrVLDL 578 (889)
T KOG4658|consen 543 ----ENPKLRTLLLQRNSDWLLEISGE----------------------------------------FFRSLPLLRVLDL 578 (889)
T ss_pred ----CCCccceEEEeecchhhhhcCHH----------------------------------------HHhhCcceEEEEC
Confidence 112233333333221 1111111 1222333333333
Q ss_pred cCCCCCCcCchhhhcCCCccEEEccCcCCccCchhhhcCCCCCEEeccCCCCCccccccccCCCCCCEEEecCCC--CCC
Q 001458 528 SGDLKFREFPEIVEHMEHLSELHLEGTAIRGLPLSIELLSGLVLLNLKNCRSLEILPVTVSNLKCLRSLKLSGCS--KLK 605 (1074)
Q Consensus 528 ~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~Ls~~~--~~~ 605 (1074)
++|.....+|..++.+-+|++|+++++.+..+|..++++..|.+|++..+......|.....+++|++|.+.... ...
T Consensus 579 s~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~ 658 (889)
T KOG4658|consen 579 SGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDK 658 (889)
T ss_pred CCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccch
Confidence 444445556666777777888888888888888888888888888888888777777666778888888887643 112
Q ss_pred ccchhhcCCCCCCEEEcCCCcccccCcchhccCCCC----EeecCCCCCCccccchhcccCCCCEEEccCCcCCCcCccc
Q 001458 606 KFPEIVRSMKDLSELFLDGTSIKEVPSSIELLTKLE----LLNLSDCKNLVRLPSSIIALKSLKTLNLSGCFKLENVPET 681 (1074)
Q Consensus 606 ~~p~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~----~L~L~~~~~l~~~~~~~~~l~~L~~L~L~~c~~l~~~p~~ 681 (1074)
..-..+.++.+|+.+.....+. .+-..+..+++|. .+.+.+ ......+..+..+.+|+.|.+.+|...+.....
T Consensus 659 ~~l~el~~Le~L~~ls~~~~s~-~~~e~l~~~~~L~~~~~~l~~~~-~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~ 736 (889)
T KOG4658|consen 659 LLLKELENLEHLENLSITISSV-LLLEDLLGMTRLRSLLQSLSIEG-CSKRTLISSLGSLGNLEELSILDCGISEIVIEW 736 (889)
T ss_pred hhHHhhhcccchhhheeecchh-HhHhhhhhhHHHHHHhHhhhhcc-cccceeecccccccCcceEEEEcCCCchhhccc
Confidence 2223345555555555544433 1111112222222 333322 223444555667777777777777665433322
Q ss_pred ccCC------CCccEEEcCCCCCCCCCCcccccccccccccccccCCCCCCCCCccEEecCCCCCCCCCCccccCCCCCC
Q 001458 682 LGQI------ESLEELDISGTAVPHSTSWYSYIPINLMRKSVALKLPSLSGLCSLRKLNLTDCNLMEGALPSDIGNLCSL 755 (1074)
Q Consensus 682 l~~l------~~L~~L~L~~n~i~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~~~~~~~p~~l~~l~~L 755 (1074)
.... +++..+.+.++..... +...-..++|+.|.+..|...++.+| ....+..+
T Consensus 737 ~~~~~~~~~f~~l~~~~~~~~~~~r~-------------------l~~~~f~~~L~~l~l~~~~~~e~~i~-~~k~~~~l 796 (889)
T KOG4658|consen 737 EESLIVLLCFPNLSKVSILNCHMLRD-------------------LTWLLFAPHLTSLSLVSCRLLEDIIP-KLKALLEL 796 (889)
T ss_pred ccccchhhhHHHHHHHHhhccccccc-------------------cchhhccCcccEEEEecccccccCCC-HHHHhhhc
Confidence 1111 1121222112111110 11123456888888888888764444 33444445
Q ss_pred CeEecCCCcCcccCccccccCCCCEeeccCCcCCCcCCCCCCCcceEeecCccccccchhh
Q 001458 756 KELYLSKNSFVSLPTSITHLSKLLNIELEDCKRLQSLPQLPPNIRQVRVNGCASLVTLLDA 816 (1074)
Q Consensus 756 ~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~lp~sL~~L~i~~C~~L~~l~~~ 816 (1074)
+.+.+..+.+..++ ...++.+.+.+..+|-..+.|+.+.+..||++..+|..
T Consensus 797 ~~~i~~f~~~~~l~---------~~~~l~~l~~i~~~~l~~~~l~~~~ve~~p~l~~~P~~ 848 (889)
T KOG4658|consen 797 KELILPFNKLEGLR---------MLCSLGGLPQLYWLPLSFLKLEELIVEECPKLGKLPLL 848 (889)
T ss_pred ccEEecccccccce---------eeecCCCCceeEecccCccchhheehhcCcccccCccc
Confidence 54444444333322 12222233333333322244777777777777776643
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.2e-38 Score=412.15 Aligned_cols=496 Identities=20% Similarity=0.233 Sum_probs=365.7
Q ss_pred ccCccccccChhhHHHHhccCC--CcccEEEEEecCCCchhhhhcccChHHHhCCCCCceEEecCccCCC----CccccC
Q 001458 313 ELGKRSRLWKEEEVCHVLTEST--GTELVEGIVLDNYHHENEVYLCASAKAFSKMTNLRLLKICNLQLPN----GLEYLS 386 (1074)
Q Consensus 313 ~~~~~~rl~~~~~~~~~l~~~~--~~~~~~~i~l~~~~~~~~~~~~~~~~~f~~l~~Lr~L~l~~~~l~~----~~~~l~ 386 (1074)
++.++.+.|...+.+......+ ....+..+.+....... ..+.+|..+++|++|++++|++.+ ++....
T Consensus 43 ~~~~~~~~w~~~~~~c~w~gv~c~~~~~v~~L~L~~~~i~~-----~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l 117 (968)
T PLN00113 43 DPLKYLSNWNSSADVCLWQGITCNNSSRVVSIDLSGKNISG-----KISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTS 117 (968)
T ss_pred CCcccCCCCCCCCCCCcCcceecCCCCcEEEEEecCCCccc-----cCChHHhCCCCCCEEECCCCccCCcCChHHhccC
Confidence 4555566776543322222222 13456666665543321 335689999999999999988653 333345
Q ss_pred cCceEEEecCCCCCCCCCCCCCCCceEEEcCcCCcc-cccccccCCCCCcEEEccCCCCCCCCCC-CCCCCCCcEEEecC
Q 001458 387 NRLRLLGWRGYPLKFLPSNLQMDKTIEIYMCYSRIG-ELWKGIKHLDKLKVMILSHSENLIRMPD-FTGAPNLEKLILEG 464 (1074)
Q Consensus 387 ~~L~~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~-~l~~~~~~l~~L~~L~Ls~~~~~~~~~~-~~~l~~L~~L~L~~ 464 (1074)
.+|++|++++|.+....+...+.+|++|++++|.+. .+|..+..+++|++|+|++|.+...+|. +.++++|++|+|++
T Consensus 118 ~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~ 197 (968)
T PLN00113 118 SSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLAS 197 (968)
T ss_pred CCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccC
Confidence 789999999999864333346889999999999987 5788899999999999999988777775 88999999999999
Q ss_pred cccccccCcchhcCCCccEEeccCCCCCCcCCccc-cccccCceecC------cCcccccCCCCCcEEeccCCCCCCcCc
Q 001458 465 CTRLYEIHPSLLLHNKLIILNMKDCTSLITLPGKI-LMKSLEKLNLK------SLPTTISGLKCLSTLDVSGDLKFREFP 537 (1074)
Q Consensus 465 ~~~l~~~~~~i~~l~~L~~L~L~~~~~l~~lp~~~-~l~~L~~L~l~------~l~~~l~~l~~L~~L~L~~~~~~~~~~ 537 (1074)
|.....+|..++.+++|+.|++++|.....+|..+ .+++|+.|++. .+|..+.++++|++|++++|...+.+|
T Consensus 198 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p 277 (968)
T PLN00113 198 NQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIP 277 (968)
T ss_pred CCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCc
Confidence 98888889999999999999999988777788776 78899999886 367788899999999999998888889
Q ss_pred hhhhcCCCccEEEccCcCCcc-CchhhhcCCCCCEEeccCCCCCccccccccCCCCCCEEEecCCCCCCccchhhcCCCC
Q 001458 538 EIVEHMEHLSELHLEGTAIRG-LPLSIELLSGLVLLNLKNCRSLEILPVTVSNLKCLRSLKLSGCSKLKKFPEIVRSMKD 616 (1074)
Q Consensus 538 ~~l~~l~~L~~L~L~~~~i~~-lp~~~~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~Ls~~~~~~~~p~~~~~l~~ 616 (1074)
..+..+++|+.|++++|.+.. +|..+..+++|+.|++++|......|..+..+++|+.|++++|.....+|..+..+++
T Consensus 278 ~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~ 357 (968)
T PLN00113 278 PSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNN 357 (968)
T ss_pred hhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCC
Confidence 889999999999999998875 7888889999999999999888888888899999999999999888888888888999
Q ss_pred CCEEEcCCCccc-ccCcchhccCCCCEeecCCCCCCccccchhcccCCCCEEEccCCcCCCcCcccccCCCCccEEEcCC
Q 001458 617 LSELFLDGTSIK-EVPSSIELLTKLELLNLSDCKNLVRLPSSIIALKSLKTLNLSGCFKLENVPETLGQIESLEELDISG 695 (1074)
Q Consensus 617 L~~L~L~~~~l~-~lp~~~~~l~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~L~~c~~l~~~p~~l~~l~~L~~L~L~~ 695 (1074)
|+.|++++|.+. .+|..+..+++|+.|++++|.....+|..+..+++|+.|++++|...+.+|..+..+++|+.|++++
T Consensus 358 L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~ 437 (968)
T PLN00113 358 LTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISN 437 (968)
T ss_pred CcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcC
Confidence 999999998876 5677777778888888888887777777777888888888888877777777777788888888887
Q ss_pred CCCCCCCC-----cccccccccccccccccCCCCCCCCCccEEecCCCCCCCCCCccccCCCCCCCeEecCCCcCc-ccC
Q 001458 696 TAVPHSTS-----WYSYIPINLMRKSVALKLPSLSGLCSLRKLNLTDCNLMEGALPSDIGNLCSLKELYLSKNSFV-SLP 769 (1074)
Q Consensus 696 n~i~~~~~-----~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~~~~~~~p~~l~~l~~L~~L~Ls~n~l~-~lp 769 (1074)
|.+..... ...+..+++..+.....+|.....++|+.|++++|++.. .+|..+..+++|+.|+|++|++. .+|
T Consensus 438 N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~p 516 (968)
T PLN00113 438 NNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSG-AVPRKLGSLSELMQLKLSENKLSGEIP 516 (968)
T ss_pred CcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCC-ccChhhhhhhccCEEECcCCcceeeCC
Confidence 77654321 122333344444444444444445566666666665542 45555555666666666666555 445
Q ss_pred ccccccCCCCEeeccCCcCCCcCCCC---CCCcceEeecCccccccch
Q 001458 770 TSITHLSKLLNIELEDCKRLQSLPQL---PPNIRQVRVNGCASLVTLL 814 (1074)
Q Consensus 770 ~~i~~l~~L~~L~L~~c~~L~~lp~l---p~sL~~L~i~~C~~L~~l~ 814 (1074)
..+..+++|+.|+|++|.....+|.. .++|+.|++++|.-...+|
T Consensus 517 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 564 (968)
T PLN00113 517 DELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIP 564 (968)
T ss_pred hHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCC
Confidence 55555666666666665544444431 1455555555554433333
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=2.4e-37 Score=400.03 Aligned_cols=458 Identities=21% Similarity=0.256 Sum_probs=396.5
Q ss_pred cChHHHhCCCCCceEEecCccCCCCcc-ccCcCceEEEecCCCCC-CCCCCC-CCCCceEEEcCcCCcc-cccccccCCC
Q 001458 357 ASAKAFSKMTNLRLLKICNLQLPNGLE-YLSNRLRLLGWRGYPLK-FLPSNL-QMDKTIEIYMCYSRIG-ELWKGIKHLD 432 (1074)
Q Consensus 357 ~~~~~f~~l~~Lr~L~l~~~~l~~~~~-~l~~~L~~L~l~~~~l~-~lp~~~-~~~~L~~L~L~~~~i~-~l~~~~~~l~ 432 (1074)
++...|..+++|++|++++|.+.+.+. ....+|++|++++|.+. .+|..+ .+.+|++|++++|.+. .+|..+.+++
T Consensus 109 ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~ 188 (968)
T PLN00113 109 IPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLT 188 (968)
T ss_pred CChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCc
Confidence 667778899999999999998865332 34568999999999986 677777 8999999999999985 6788999999
Q ss_pred CCcEEEccCCCCCCCCCC-CCCCCCCcEEEecCcccccccCcchhcCCCccEEeccCCCCCCcCCccc-cccccCceecC
Q 001458 433 KLKVMILSHSENLIRMPD-FTGAPNLEKLILEGCTRLYEIHPSLLLHNKLIILNMKDCTSLITLPGKI-LMKSLEKLNLK 510 (1074)
Q Consensus 433 ~L~~L~Ls~~~~~~~~~~-~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~~~~l~~lp~~~-~l~~L~~L~l~ 510 (1074)
+|++|+|++|.+...+|. +.++++|++|+|++|.....+|..++.+++|++|++++|.....+|..+ .+++|+.|++.
T Consensus 189 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~ 268 (968)
T PLN00113 189 SLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLY 268 (968)
T ss_pred CCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECc
Confidence 999999999998877775 8999999999999999888999999999999999999988777788777 78899999886
Q ss_pred ------cCcccccCCCCCcEEeccCCCCCCcCchhhhcCCCccEEEccCcCCcc-CchhhhcCCCCCEEeccCCCCCccc
Q 001458 511 ------SLPTTISGLKCLSTLDVSGDLKFREFPEIVEHMEHLSELHLEGTAIRG-LPLSIELLSGLVLLNLKNCRSLEIL 583 (1074)
Q Consensus 511 ------~l~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~-lp~~~~~l~~L~~L~L~~~~~~~~l 583 (1074)
.+|..+.++++|+.|++++|.....+|..+..+++|+.|++++|.+.. +|..+..+++|+.|++++|.....+
T Consensus 269 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 348 (968)
T PLN00113 269 QNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEI 348 (968)
T ss_pred CCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcC
Confidence 356788899999999999999888999999999999999999999875 7888999999999999999998899
Q ss_pred cccccCCCCCCEEEecCCCCCCccchhhcCCCCCCEEEcCCCccc-ccCcchhccCCCCEeecCCCCCCccccchhcccC
Q 001458 584 PVTVSNLKCLRSLKLSGCSKLKKFPEIVRSMKDLSELFLDGTSIK-EVPSSIELLTKLELLNLSDCKNLVRLPSSIIALK 662 (1074)
Q Consensus 584 ~~~l~~l~~L~~L~Ls~~~~~~~~p~~~~~l~~L~~L~L~~~~l~-~lp~~~~~l~~L~~L~L~~~~~l~~~~~~~~~l~ 662 (1074)
|..++.+++|+.|++++|.....+|..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|.....+|..+..++
T Consensus 349 p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~ 428 (968)
T PLN00113 349 PKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLP 428 (968)
T ss_pred ChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCC
Confidence 999999999999999999988889999999999999999999887 6788889999999999999998888899999999
Q ss_pred CCCEEEccCCcCCCcCcccccCCCCccEEEcCCCCCCCCCC----cccccccccccccccccCCC-CCCCCCccEEecCC
Q 001458 663 SLKTLNLSGCFKLENVPETLGQIESLEELDISGTAVPHSTS----WYSYIPINLMRKSVALKLPS-LSGLCSLRKLNLTD 737 (1074)
Q Consensus 663 ~L~~L~L~~c~~l~~~p~~l~~l~~L~~L~L~~n~i~~~~~----~~~~~~~~~~~~~~~~~l~~-l~~l~~L~~L~Ls~ 737 (1074)
+|+.|++++|...+.+|..+..+++|+.|++++|.+..... ...+..+++..+.....+|. +.++++|+.|+|++
T Consensus 429 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 508 (968)
T PLN00113 429 LVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSE 508 (968)
T ss_pred CCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccChhhhhhhccCEEECcC
Confidence 99999999999888888888899999999999997653221 12233445555555555554 78899999999999
Q ss_pred CCCCCCCCccccCCCCCCCeEecCCCcCc-ccCccccccCCCCEeeccCCcCCCcCCCC---CCCcceEeecCccccccc
Q 001458 738 CNLMEGALPSDIGNLCSLKELYLSKNSFV-SLPTSITHLSKLLNIELEDCKRLQSLPQL---PPNIRQVRVNGCASLVTL 813 (1074)
Q Consensus 738 ~~~~~~~~p~~l~~l~~L~~L~Ls~n~l~-~lp~~i~~l~~L~~L~L~~c~~L~~lp~l---p~sL~~L~i~~C~~L~~l 813 (1074)
|.+.. .+|..+..+++|+.|+|++|.++ .+|..+..+++|+.|+|++|+....+|.. .++|+.|++++|.-...+
T Consensus 509 N~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~ 587 (968)
T PLN00113 509 NKLSG-EIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSL 587 (968)
T ss_pred Cccee-eCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeC
Confidence 99864 78999999999999999999998 57888999999999999999887788852 368999999999866666
Q ss_pred hh
Q 001458 814 LD 815 (1074)
Q Consensus 814 ~~ 815 (1074)
|.
T Consensus 588 p~ 589 (968)
T PLN00113 588 PS 589 (968)
T ss_pred CC
Confidence 64
No 5
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=3e-38 Score=349.67 Aligned_cols=268 Identities=33% Similarity=0.506 Sum_probs=217.4
Q ss_pred hhHHHHHHHhhcCCCCCeEEEEEEccCCCcHHHHHHHHHHH--hcccccceEEEeechhhhccCChHHHHHHHHHHHhcc
Q 001458 2 DSRCEKLRFLMDSGSSDVRMIGICGMGGLGKTTIARVVYDL--ISHEFEASGFLDNVREISSKGGLVSLQRQLLSQLLKL 79 (1074)
Q Consensus 2 ~~~~~~l~~lL~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~--~~~~F~~~~~~~~~~~~s~~~~~~~l~~~ll~~l~~~ 79 (1074)
|.++++|...|....+++++|+|+||||+||||||++++++ ++++|+.++|+. .+......+++++++.++...
T Consensus 2 e~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~----~~~~~~~~~~~~~i~~~l~~~ 77 (287)
T PF00931_consen 2 EKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVS----LSKNPSLEQLLEQILRQLGEP 77 (287)
T ss_dssp HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEE----EES-SCCHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccc----ccccccccccccccccccccc
Confidence 67899999999876678999999999999999999999987 899999999988 455556688899999887654
Q ss_pred cCC--ccccccchHHHHHhhhCCCeEEEEEcCCCChHHHHHHhcCCCCCCCCCEEEEEeCChhhhhhcCC-CceecCCCC
Q 001458 80 ADN--SIWNVFDGIDMLGSRLQRKKVLLVIDDVVDVKQLQSLAGNREWFGSGSRIIITSRDEHLLKTHGV-DEVYKPHGL 156 (1074)
Q Consensus 80 ~~~--~~~~~~~~~~~i~~~L~~kr~LlVLDdv~~~~~l~~l~~~~~~~~~gs~IiiTTR~~~v~~~~~~-~~~~~l~~L 156 (1074)
... ...+..+....+++.|+++|+||||||||+..+|+.+...+..+..|++||||||++.++..++. ...|++++|
T Consensus 78 ~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L 157 (287)
T PF00931_consen 78 DSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPL 157 (287)
T ss_dssp -STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS-
T ss_pred ccccccccccccccccchhhhccccceeeeeeeccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 322 34566778899999999999999999999999999988877777789999999999998877654 678999999
Q ss_pred ChHHHHHHHHHhhhcCC-CCChhHHHHHHHHHHHhCCCchHHHHHHhhcCC-CCHHHHHHHHHHHhcCC------CchhH
Q 001458 157 NYDEALQLFNMKAFKTY-QPLQECVQLSARIIRYAGGLPLALEVLGSFLSG-RSVDEWRSTLERLEIEP------PSEIL 228 (1074)
Q Consensus 157 ~~~ea~~Lf~~~a~~~~-~~~~~~~~~~~~i~~~~~GlPLal~~~g~~L~~-~~~~~w~~~l~~l~~~~------~~~i~ 228 (1074)
+.+||++||.+.++... ...+...+.+++|+++|+|+||||+++|++|+. .+..+|+.+++.+.... ...+.
T Consensus 158 ~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~ 237 (287)
T PF00931_consen 158 SEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSVF 237 (287)
T ss_dssp -HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999998765 334455678999999999999999999999955 36789999998876543 46799
Q ss_pred HHHhhccccCcHhhhhhheeeecccCCC--CHHHHHHHhhhCCCCcc
Q 001458 229 DILQISFDGLQELEKKIFLDIACFFKGN--DRDYVTNFLEGCGFHPV 273 (1074)
Q Consensus 229 ~~l~~sy~~L~~~~k~~fl~~a~f~~~~--~~~~l~~~~~~~g~~~~ 273 (1074)
.++.+||+.|+++.|+||+++|+||.++ +.+.++++|.++|++..
T Consensus 238 ~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~ 284 (287)
T PF00931_consen 238 SALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISS 284 (287)
T ss_dssp HHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC-
T ss_pred ccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCcc
Confidence 9999999999999999999999999987 48999999999998764
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.96 E-value=2.7e-30 Score=280.46 Aligned_cols=404 Identities=21% Similarity=0.193 Sum_probs=250.9
Q ss_pred cCcCceEEEecCCCCCCCCCCC--CCCCceEEEcCcCCcccccccccCCCCCcEEEccCCCCCCCCCCCCCCCCCcEEEe
Q 001458 385 LSNRLRLLGWRGYPLKFLPSNL--QMDKTIEIYMCYSRIGELWKGIKHLDKLKVMILSHSENLIRMPDFTGAPNLEKLIL 462 (1074)
Q Consensus 385 l~~~L~~L~l~~~~l~~lp~~~--~~~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~l~~L~~L~L 462 (1074)
+|..-+.|++++|.+..+...+ .+++|+++++.+|.++.+|.......+|+.|+|.+|.
T Consensus 76 lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~------------------- 136 (873)
T KOG4194|consen 76 LPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNL------------------- 136 (873)
T ss_pred CccceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccc-------------------
Confidence 3334444555555554443332 4555555555555555555544444555555555554
Q ss_pred cCcccccccCcchhcCCCccEEeccCCCCCCcCCccccccccCceecCcCcccccCCCCCcEEeccCCCCCCcCchhhhc
Q 001458 463 EGCTRLYEIHPSLLLHNKLIILNMKDCTSLITLPGKILMKSLEKLNLKSLPTTISGLKCLSTLDVSGDLKFREFPEIVEH 542 (1074)
Q Consensus 463 ~~~~~l~~~~~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~ 542 (1074)
+...-.+.+..++.|+.|+|+.|. +..+|. ..+..-.++++|+|++|.+...-...|..
T Consensus 137 ----I~sv~se~L~~l~alrslDLSrN~-is~i~~----------------~sfp~~~ni~~L~La~N~It~l~~~~F~~ 195 (873)
T KOG4194|consen 137 ----ISSVTSEELSALPALRSLDLSRNL-ISEIPK----------------PSFPAKVNIKKLNLASNRITTLETGHFDS 195 (873)
T ss_pred ----cccccHHHHHhHhhhhhhhhhhch-hhcccC----------------CCCCCCCCceEEeeccccccccccccccc
Confidence 333333344444444444444421 111111 12223345555566666665555556667
Q ss_pred CCCccEEEccCcCCccCchh-hhcCCCCCEEeccCCCCCccccccccCCCCCCEEEecCCCCCCccchhhcCCCCCCEEE
Q 001458 543 MEHLSELHLEGTAIRGLPLS-IELLSGLVLLNLKNCRSLEILPVTVSNLKCLRSLKLSGCSKLKKFPEIVRSMKDLSELF 621 (1074)
Q Consensus 543 l~~L~~L~L~~~~i~~lp~~-~~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~Ls~~~~~~~~p~~~~~l~~L~~L~ 621 (1074)
+.+|..|.|+.|.++.+|.. |.++++|+.|+|..|.+...-...|.++++|+.|.|..|...+.-...|..|.++++|+
T Consensus 196 lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~ 275 (873)
T KOG4194|consen 196 LNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLN 275 (873)
T ss_pred cchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceee
Confidence 77777777777777777754 45577777777777765554445677788888888877777666666777788888888
Q ss_pred cCCCcccccCc-chhccCCCCEeecCCCCCCccccchhcccCCCCEEEccCCcCCCcCcccccCCCCccEEEcCCCCCCC
Q 001458 622 LDGTSIKEVPS-SIELLTKLELLNLSDCKNLVRLPSSIIALKSLKTLNLSGCFKLENVPETLGQIESLEELDISGTAVPH 700 (1074)
Q Consensus 622 L~~~~l~~lp~-~~~~l~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~L~~c~~l~~~p~~l~~l~~L~~L~L~~n~i~~ 700 (1074)
|..|++..+.. ++.++++|+.|++++|.+...-+++....++|++|+|++|.+..--+..|..+..|++|.|+.|.+..
T Consensus 276 L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~ 355 (873)
T KOG4194|consen 276 LETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDH 355 (873)
T ss_pred cccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHH
Confidence 88887776643 56778888888888887777767777777888888888887777777788888888888888887765
Q ss_pred CCCcccccccccccccccccCCCCCCCCCccEEecCCCCCCC--CCCccccCCCCCCCeEecCCCcCcccCc-cccccCC
Q 001458 701 STSWYSYIPINLMRKSVALKLPSLSGLCSLRKLNLTDCNLME--GALPSDIGNLCSLKELYLSKNSFVSLPT-SITHLSK 777 (1074)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~~~~--~~~p~~l~~l~~L~~L~Ls~n~l~~lp~-~i~~l~~ 777 (1074)
.. -..|.++++|++|||++|.+.. +.-...+..+++|+.|.|.||++..+|. .+..|+.
T Consensus 356 l~------------------e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~ 417 (873)
T KOG4194|consen 356 LA------------------EGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEA 417 (873)
T ss_pred HH------------------hhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcc
Confidence 32 1236678888888888887643 1122346678899999999999888875 4778888
Q ss_pred CCEeeccCCcCCCcCCCC--CCCcceEeecCccccccchhhhccccCccccccccchhhhcCCchhHHHHHHHHHHhhcc
Q 001458 778 LLNIELEDCKRLQSLPQL--PPNIRQVRVNGCASLVTLLDALKLCKSDSTMIACLDSLKLLGNKSLAFSMLREYLEAVSN 855 (1074)
Q Consensus 778 L~~L~L~~c~~L~~lp~l--p~sL~~L~i~~C~~L~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~~ 855 (1074)
|+.|+|.+|....--|+- |-. |+.|.+...+.+|+|.+..+.+|.-.
T Consensus 418 LE~LdL~~NaiaSIq~nAFe~m~-------------------------------Lk~Lv~nSssflCDCql~Wl~qWl~~ 466 (873)
T KOG4194|consen 418 LEHLDLGDNAIASIQPNAFEPME-------------------------------LKELVMNSSSFLCDCQLKWLAQWLYR 466 (873)
T ss_pred cceecCCCCcceeecccccccch-------------------------------hhhhhhcccceEEeccHHHHHHHHHh
Confidence 999998887533222221 112 22222233334555555555555433
Q ss_pred cccceEEEcCCCCCCCCccccCC
Q 001458 856 TRQHLSVVVPGSEIPEWFMYQNE 878 (1074)
Q Consensus 856 ~~~~~~~~~pg~~iP~wf~~q~~ 878 (1074)
.... ..+.--...|+|..-|+.
T Consensus 467 ~~lq-~sv~a~CayPe~Lad~~i 488 (873)
T KOG4194|consen 467 RKLQ-SSVIAKCAYPEPLADQSI 488 (873)
T ss_pred cccc-cceeeeccCCccccccee
Confidence 2211 223444678999988863
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.96 E-value=1.6e-31 Score=290.91 Aligned_cols=365 Identities=22% Similarity=0.314 Sum_probs=313.1
Q ss_pred ceEEEecCCCCC--CCCCCC-CCCCceEEEcCcCCcccccccccCCCCCcEEEccCCCCCCCCCCCCCCCCCcEEEecCc
Q 001458 389 LRLLGWRGYPLK--FLPSNL-QMDKTIEIYMCYSRIGELWKGIKHLDKLKVMILSHSENLIRMPDFTGAPNLEKLILEGC 465 (1074)
Q Consensus 389 L~~L~l~~~~l~--~lp~~~-~~~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~l~~L~~L~L~~~ 465 (1074)
.|-.++++|.++ .+|.+. ++..++-|.|..+++..+|+.++.|.+|++|.++||++......++.+|.|+.+.+..|
T Consensus 9 VrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N 88 (1255)
T KOG0444|consen 9 VRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDN 88 (1255)
T ss_pred eecccccCCcCCCCcCchhHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhcc
Confidence 455666777664 577777 88888999999999999999999999999999999998888888999999999998887
Q ss_pred cc-ccccCcchhcCCCccEEeccCCCCCCcCCccccccccCceecCcCcccccCCCCCcEEeccCCCCCCcCchhhhcCC
Q 001458 466 TR-LYEIHPSLLLHNKLIILNMKDCTSLITLPGKILMKSLEKLNLKSLPTTISGLKCLSTLDVSGDLKFREFPEIVEHME 544 (1074)
Q Consensus 466 ~~-l~~~~~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~ 544 (1074)
+. ...+|..+..+..|..|+|++|. +..+|..+..-+++-.|+|++|.+.......+.++.
T Consensus 89 ~LKnsGiP~diF~l~dLt~lDLShNq------------------L~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLt 150 (1255)
T KOG0444|consen 89 NLKNSGIPTDIFRLKDLTILDLSHNQ------------------LREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLT 150 (1255)
T ss_pred ccccCCCCchhcccccceeeecchhh------------------hhhcchhhhhhcCcEEEEcccCccccCCchHHHhhH
Confidence 64 45688999999999999999863 345666777778888899999876655556788999
Q ss_pred CccEEEccCcCCccCchhhhcCCCCCEEeccCCCCCccccccccCCCCCCEEEecCCCC-CCccchhhcCCCCCCEEEcC
Q 001458 545 HLSELHLEGTAIRGLPLSIELLSGLVLLNLKNCRSLEILPVTVSNLKCLRSLKLSGCSK-LKKFPEIVRSMKDLSELFLD 623 (1074)
Q Consensus 545 ~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~Ls~~~~-~~~~p~~~~~l~~L~~L~L~ 623 (1074)
.|-.|+|++|.+..+|..+..+.+|++|.|++|.....--..+..+++|+.|.+++.+. +..+|..+..+.+|..++++
T Consensus 151 DLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS 230 (1255)
T KOG0444|consen 151 DLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLS 230 (1255)
T ss_pred hHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhcccc
Confidence 99999999999999999999999999999999987655444556788899999998765 46789999999999999999
Q ss_pred CCcccccCcchhccCCCCEeecCCCCCCccccchhcccCCCCEEEccCCcCCCcCcccccCCCCccEEEcCCCCCCCCCC
Q 001458 624 GTSIKEVPSSIELLTKLELLNLSDCKNLVRLPSSIIALKSLKTLNLSGCFKLENVPETLGQIESLEELDISGTAVPHSTS 703 (1074)
Q Consensus 624 ~~~l~~lp~~~~~l~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~L~~c~~l~~~p~~l~~l~~L~~L~L~~n~i~~~~~ 703 (1074)
.|++..+|..+..+++|+.|+|++|.+ +.+........+|++|+++.| .+..+|..+..+++|+.|++.+|.++..+
T Consensus 231 ~N~Lp~vPecly~l~~LrrLNLS~N~i-teL~~~~~~W~~lEtLNlSrN-QLt~LP~avcKL~kL~kLy~n~NkL~FeG- 307 (1255)
T KOG0444|consen 231 ENNLPIVPECLYKLRNLRRLNLSGNKI-TELNMTEGEWENLETLNLSRN-QLTVLPDAVCKLTKLTKLYANNNKLTFEG- 307 (1255)
T ss_pred ccCCCcchHHHhhhhhhheeccCcCce-eeeeccHHHHhhhhhhccccc-hhccchHHHhhhHHHHHHHhccCcccccC-
Confidence 999999999999999999999999985 445555666789999999999 67789999999999999999999876532
Q ss_pred cccccccccccccccccCCC-CCCCCCccEEecCCCCCCCCCCccccCCCCCCCeEecCCCcCcccCccccccCCCCEee
Q 001458 704 WYSYIPINLMRKSVALKLPS-LSGLCSLRKLNLTDCNLMEGALPSDIGNLCSLKELYLSKNSFVSLPTSITHLSKLLNIE 782 (1074)
Q Consensus 704 ~~~~~~~~~~~~~~~~~l~~-l~~l~~L~~L~Ls~~~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~ 782 (1074)
+|+ ++.+..|+.+..++|.+ +.+|..++.+..|+.|.|+.|.+..+|+.|.-|+.|+.|+
T Consensus 308 -----------------iPSGIGKL~~Levf~aanN~L--ElVPEglcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~vLD 368 (1255)
T KOG0444|consen 308 -----------------IPSGIGKLIQLEVFHAANNKL--ELVPEGLCRCVKLQKLKLDHNRLITLPEAIHLLPDLKVLD 368 (1255)
T ss_pred -----------------CccchhhhhhhHHHHhhcccc--ccCchhhhhhHHHHHhcccccceeechhhhhhcCCcceee
Confidence 555 88899999999999988 4799999999999999999999999999999999999999
Q ss_pred ccCCcCCCcCC
Q 001458 783 LEDCKRLQSLP 793 (1074)
Q Consensus 783 L~~c~~L~~lp 793 (1074)
+..|++|.--|
T Consensus 369 lreNpnLVMPP 379 (1255)
T KOG0444|consen 369 LRENPNLVMPP 379 (1255)
T ss_pred ccCCcCccCCC
Confidence 99999987544
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.94 E-value=2.2e-28 Score=265.73 Aligned_cols=368 Identities=21% Similarity=0.195 Sum_probs=269.9
Q ss_pred CceEEecCccCCC-Cc--cccCcCceEEEecCCCCCCCCCCCC-CCCceEEEcCcCCccccc-ccccCCCCCcEEEccCC
Q 001458 368 LRLLKICNLQLPN-GL--EYLSNRLRLLGWRGYPLKFLPSNLQ-MDKTIEIYMCYSRIGELW-KGIKHLDKLKVMILSHS 442 (1074)
Q Consensus 368 Lr~L~l~~~~l~~-~~--~~l~~~L~~L~l~~~~l~~lp~~~~-~~~L~~L~L~~~~i~~l~-~~~~~l~~L~~L~Ls~~ 442 (1074)
-++|++++|.+.. ++ ++-..+|+.+++..|.++.+|...+ ..+|+.|+|.+|.|.++- +.++-++.|+.||||.|
T Consensus 80 t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN 159 (873)
T KOG4194|consen 80 TQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRN 159 (873)
T ss_pred eeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhc
Confidence 3568899988765 22 2334568999999999999998884 455999999999999885 66888999999999998
Q ss_pred CCCCC-CCCCCCCCCCcEEEecCcccccccCcchhcCCCccEEeccCCCCCCcCCccccccccCceecCcCcccccCCCC
Q 001458 443 ENLIR-MPDFTGAPNLEKLILEGCTRLYEIHPSLLLHNKLIILNMKDCTSLITLPGKILMKSLEKLNLKSLPTTISGLKC 521 (1074)
Q Consensus 443 ~~~~~-~~~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~l~~~l~~l~~ 521 (1074)
.+... .|.|..-.++++|+|++|.+...-...|..+.+|..|.|+.|. ++.+|. ..++++++
T Consensus 160 ~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNr-ittLp~----------------r~Fk~L~~ 222 (873)
T KOG4194|consen 160 LISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNR-ITTLPQ----------------RSFKRLPK 222 (873)
T ss_pred hhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCc-ccccCH----------------HHhhhcch
Confidence 65433 3448888999999999998877777788888899999998853 444443 23455666
Q ss_pred CcEEeccCCCCCCcCchhhhcCCCccEEEccCcCCccCchh-hhcCCCCCEEeccCCCCCccccccccCCCCCCEEEecC
Q 001458 522 LSTLDVSGDLKFREFPEIVEHMEHLSELHLEGTAIRGLPLS-IELLSGLVLLNLKNCRSLEILPVTVSNLKCLRSLKLSG 600 (1074)
Q Consensus 522 L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~lp~~-~~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~Ls~ 600 (1074)
|+.|+|..|.+-..-.-.|..+++|+.|.|..|.|..+.+. |..+.++++|+|..|+....-..++-++++|+.|+||.
T Consensus 223 L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~ 302 (873)
T KOG4194|consen 223 LESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSY 302 (873)
T ss_pred hhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccch
Confidence 66666676654433344567777788888888888777654 56677888888888777777677777888888888888
Q ss_pred CCCCCccchhhcCCCCCCEEEcCCCcccccCc-chhccCCCCEeecCCCCCCccccchhcccCCCCEEEccCCcCCCc--
Q 001458 601 CSKLKKFPEIVRSMKDLSELFLDGTSIKEVPS-SIELLTKLELLNLSDCKNLVRLPSSIIALKSLKTLNLSGCFKLEN-- 677 (1074)
Q Consensus 601 ~~~~~~~p~~~~~l~~L~~L~L~~~~l~~lp~-~~~~l~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~L~~c~~l~~-- 677 (1074)
|.+...-++....+++|++|+|+.|+|+.++. ++..+..|+.|+|+.|+....-...|..+++|++|+|++|.....
T Consensus 303 NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IE 382 (873)
T KOG4194|consen 303 NAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIE 382 (873)
T ss_pred hhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEe
Confidence 87777777777777888888888888887754 567777888888888776555556677778888888888765433
Q ss_pred -CcccccCCCCccEEEcCCCCCCCCCCcccccccccccccccccCCCCCCCCCccEEecCCCCCCCCCCccccCCCCCCC
Q 001458 678 -VPETLGQIESLEELDISGTAVPHSTSWYSYIPINLMRKSVALKLPSLSGLCSLRKLNLTDCNLMEGALPSDIGNLCSLK 756 (1074)
Q Consensus 678 -~p~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~~~~~~~p~~l~~l~~L~ 756 (1074)
-...+.++++|++|++.||++..++ -..|.++++|++|+|.+|.+.. .-|.+|..+ .|+
T Consensus 383 Daa~~f~gl~~LrkL~l~gNqlk~I~------------------krAfsgl~~LE~LdL~~NaiaS-Iq~nAFe~m-~Lk 442 (873)
T KOG4194|consen 383 DAAVAFNGLPSLRKLRLTGNQLKSIP------------------KRAFSGLEALEHLDLGDNAIAS-IQPNAFEPM-ELK 442 (873)
T ss_pred cchhhhccchhhhheeecCceeeecc------------------hhhhccCcccceecCCCCccee-ecccccccc-hhh
Confidence 3345677888888888888876532 1237788888888888888765 567777777 777
Q ss_pred eEecCC------CcCcccCccc
Q 001458 757 ELYLSK------NSFVSLPTSI 772 (1074)
Q Consensus 757 ~L~Ls~------n~l~~lp~~i 772 (1074)
+|.+.. |++..++.++
T Consensus 443 ~Lv~nSssflCDCql~Wl~qWl 464 (873)
T KOG4194|consen 443 ELVMNSSSFLCDCQLKWLAQWL 464 (873)
T ss_pred hhhhcccceEEeccHHHHHHHH
Confidence 776654 4555555554
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.94 E-value=1.5e-29 Score=275.48 Aligned_cols=366 Identities=27% Similarity=0.373 Sum_probs=298.3
Q ss_pred CCceEEEcCcCCcc--cccccccCCCCCcEEEccCCCCCCCCCCCCCCCCCcEEEecCcccccccCcchhcCCCccEEec
Q 001458 409 DKTIEIYMCYSRIG--ELWKGIKHLDKLKVMILSHSENLIRMPDFTGAPNLEKLILEGCTRLYEIHPSLLLHNKLIILNM 486 (1074)
Q Consensus 409 ~~L~~L~L~~~~i~--~l~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L 486 (1074)
+-.+-+++++|.+. .+|.....++.++.|.|..+++...+..++.+.+|++|.+..|. +..++..+..++.|+.+.+
T Consensus 7 pFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~-L~~vhGELs~Lp~LRsv~~ 85 (1255)
T KOG0444|consen 7 PFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQ-LISVHGELSDLPRLRSVIV 85 (1255)
T ss_pred ceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhh-hHhhhhhhccchhhHHHhh
Confidence 34566777777775 56777778888888888777644333347777777777777754 4555666666677777666
Q ss_pred cCCCCCCcCCccccccccCceecCcCcccccCCCCCcEEeccCCCCCCcCchhhhcCCCccEEEccCcCCccCchh-hhc
Q 001458 487 KDCTSLITLPGKILMKSLEKLNLKSLPTTISGLKCLSTLDVSGDLKFREFPEIVEHMEHLSELHLEGTAIRGLPLS-IEL 565 (1074)
Q Consensus 487 ~~~~~l~~lp~~~~l~~L~~L~l~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~lp~~-~~~ 565 (1074)
+.|+ |.-+.+|..+..+..|..|||++| .....|..+...+++-.|+|++|+|..+|.. +-+
T Consensus 86 R~N~----------------LKnsGiP~diF~l~dLt~lDLShN-qL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfin 148 (1255)
T KOG0444|consen 86 RDNN----------------LKNSGIPTDIFRLKDLTILDLSHN-QLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFIN 148 (1255)
T ss_pred hccc----------------cccCCCCchhcccccceeeecchh-hhhhcchhhhhhcCcEEEEcccCccccCCchHHHh
Confidence 6642 122468889999999999999998 4667899999999999999999999999976 568
Q ss_pred CCCCCEEeccCCCCCccccccccCCCCCCEEEecCCCCCCccchhhcCCCCCCEEEcCCCc--ccccCcchhccCCCCEe
Q 001458 566 LSGLVLLNLKNCRSLEILPVTVSNLKCLRSLKLSGCSKLKKFPEIVRSMKDLSELFLDGTS--IKEVPSSIELLTKLELL 643 (1074)
Q Consensus 566 l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~Ls~~~~~~~~p~~~~~l~~L~~L~L~~~~--l~~lp~~~~~l~~L~~L 643 (1074)
++.|-.|+|++|+ ++.+|+.+..+.+|++|.|++|+...-.-..+..|++|+.|.+++++ +..+|.++..+.+|..+
T Consensus 149 LtDLLfLDLS~Nr-Le~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dv 227 (1255)
T KOG0444|consen 149 LTDLLFLDLSNNR-LEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDV 227 (1255)
T ss_pred hHhHhhhccccch-hhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhc
Confidence 9999999999976 67778889999999999999998654444445568889999999984 45899999999999999
Q ss_pred ecCCCCCCccccchhcccCCCCEEEccCCcCCCcCcccccCCCCccEEEcCCCCCCCCCCcccccccccccccccccCCC
Q 001458 644 NLSDCKNLVRLPSSIIALKSLKTLNLSGCFKLENVPETLGQIESLEELDISGTAVPHSTSWYSYIPINLMRKSVALKLPS 723 (1074)
Q Consensus 644 ~L~~~~~l~~~~~~~~~l~~L~~L~L~~c~~l~~~p~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~~~~~~~~~l~~ 723 (1074)
+++.|. +..+|..+..+++|+.|+|++|.+. .+....+.-.+|++|+++.|.++. +|.
T Consensus 228 DlS~N~-Lp~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt~--------------------LP~ 285 (1255)
T KOG0444|consen 228 DLSENN-LPIVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLTV--------------------LPD 285 (1255)
T ss_pred cccccC-CCcchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhcc--------------------chH
Confidence 999876 6788999999999999999999543 444455667889999999998876 454
Q ss_pred -CCCCCCccEEecCCCCCCCCCCccccCCCCCCCeEecCCCcCcccCccccccCCCCEeeccCCcCCCcCCC---CCCCc
Q 001458 724 -LSGLCSLRKLNLTDCNLMEGALPSDIGNLCSLKELYLSKNSFVSLPTSITHLSKLLNIELEDCKRLQSLPQ---LPPNI 799 (1074)
Q Consensus 724 -l~~l~~L~~L~Ls~~~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~---lp~sL 799 (1074)
+..++.|+.|.+.+|.+.-+.+|+.++.|..|+.+..++|.+.-+|+++..|.+|+.|.|++| .|..+|+ +-+.|
T Consensus 286 avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~N-rLiTLPeaIHlL~~l 364 (1255)
T KOG0444|consen 286 AVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHN-RLITLPEAIHLLPDL 364 (1255)
T ss_pred HHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhccccc-ceeechhhhhhcCCc
Confidence 778999999999999999899999999999999999999999999999999999999999766 6777886 55899
Q ss_pred ceEeecCccccccchhh
Q 001458 800 RQVRVNGCASLVTLLDA 816 (1074)
Q Consensus 800 ~~L~i~~C~~L~~l~~~ 816 (1074)
+.|++...|.|.--|.+
T Consensus 365 ~vLDlreNpnLVMPPKP 381 (1255)
T KOG0444|consen 365 KVLDLRENPNLVMPPKP 381 (1255)
T ss_pred ceeeccCCcCccCCCCc
Confidence 99999999999876543
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.94 E-value=6.3e-30 Score=266.44 Aligned_cols=405 Identities=21% Similarity=0.271 Sum_probs=307.0
Q ss_pred cChHHHhCCCCCceEEecCccCCCCccccC--cCceEEEecCCCCCCCCCCC-CCCCceEEEcCcCCcccccccccCCCC
Q 001458 357 ASAKAFSKMTNLRLLKICNLQLPNGLEYLS--NRLRLLGWRGYPLKFLPSNL-QMDKTIEIYMCYSRIGELWKGIKHLDK 433 (1074)
Q Consensus 357 ~~~~~f~~l~~Lr~L~l~~~~l~~~~~~l~--~~L~~L~l~~~~l~~lp~~~-~~~~L~~L~L~~~~i~~l~~~~~~l~~ 433 (1074)
-.+.+..++..++.|+.+.|++..-+.... .+|+.|+.+.|.+..+|+.+ .+..+..++..+|++.++|.++..+.+
T Consensus 82 ~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~ 161 (565)
T KOG0472|consen 82 QLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSK 161 (565)
T ss_pred hCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhccccccccCchHHHHHHH
Confidence 445666777778888888877655443322 36888899999999998888 788899999999999999999999999
Q ss_pred CcEEEccCCCCCCCCCCCCCCCCCcEEEecCcccccccCcchhcCCCccEEeccCCCCCCcCCccccccccCceecC---
Q 001458 434 LKVMILSHSENLIRMPDFTGAPNLEKLILEGCTRLYEIHPSLLLHNKLIILNMKDCTSLITLPGKILMKSLEKLNLK--- 510 (1074)
Q Consensus 434 L~~L~Ls~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~--- 510 (1074)
|..+++.+|+.....|+...++.|++|+...| .+..+|+.++.+.+|..|++..| .+..+|..-.+..|+++.+.
T Consensus 162 l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N-~L~tlP~~lg~l~~L~~LyL~~N-ki~~lPef~gcs~L~Elh~g~N~ 239 (565)
T KOG0472|consen 162 LSKLDLEGNKLKALPENHIAMKRLKHLDCNSN-LLETLPPELGGLESLELLYLRRN-KIRFLPEFPGCSLLKELHVGENQ 239 (565)
T ss_pred HHHhhccccchhhCCHHHHHHHHHHhcccchh-hhhcCChhhcchhhhHHHHhhhc-ccccCCCCCccHHHHHHHhcccH
Confidence 99999999988888888666899999988774 57888999999999999999884 56677755578888888775
Q ss_pred --cCccccc-CCCCCcEEeccCCCCCCcCchhhhcCCCccEEEccCcCCccCchhhhcCCCCCEEeccCCCCCccc----
Q 001458 511 --SLPTTIS-GLKCLSTLDVSGDLKFREFPEIVEHMEHLSELHLEGTAIRGLPLSIELLSGLVLLNLKNCRSLEIL---- 583 (1074)
Q Consensus 511 --~l~~~l~-~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~l---- 583 (1074)
-+|+... .+++|..||++.| ..+..|+.+..+++|++|++++|.|+.+|.+++++ +|+.|.+.+|...+.-
T Consensus 240 i~~lpae~~~~L~~l~vLDLRdN-klke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii 317 (565)
T KOG0472|consen 240 IEMLPAEHLKHLNSLLVLDLRDN-KLKEVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRTIRREII 317 (565)
T ss_pred HHhhHHHHhcccccceeeecccc-ccccCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCchHHHHHHHH
Confidence 3566554 8889999999988 56788888889999999999999999999999988 8888888887643210
Q ss_pred ---------------------------------cc----cccCCCCCCEEEecCCCCCCccchh-hcCCC--CCCEEEcC
Q 001458 584 ---------------------------------PV----TVSNLKCLRSLKLSGCSKLKKFPEI-VRSMK--DLSELFLD 623 (1074)
Q Consensus 584 ---------------------------------~~----~l~~l~~L~~L~Ls~~~~~~~~p~~-~~~l~--~L~~L~L~ 623 (1074)
+. ......+.+.|++++-+. ..+|+. |..-. -....+++
T Consensus 318 ~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~ql-t~VPdEVfea~~~~~Vt~Vnfs 396 (565)
T KOG0472|consen 318 SKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQL-TLVPDEVFEAAKSEIVTSVNFS 396 (565)
T ss_pred cccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhccccccc-ccCCHHHHHHhhhcceEEEecc
Confidence 00 012234566677766433 334433 32221 26677888
Q ss_pred CCcccccCcchhccCCCCEeecCCCCCCccccchhcccCCCCEEEccCCcCCCcCcccccCCCCccEEEcCCCCCCCCCC
Q 001458 624 GTSIKEVPSSIELLTKLELLNLSDCKNLVRLPSSIIALKSLKTLNLSGCFKLENVPETLGQIESLEELDISGTAVPHSTS 703 (1074)
Q Consensus 624 ~~~l~~lp~~~~~l~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~L~~c~~l~~~p~~l~~l~~L~~L~L~~n~i~~~~~ 703 (1074)
.|++.++|..+..+..+.+.-+.+++....+|..++.+++|..|++++| .+..+|..++.+-.|+.|+++.|.+..
T Consensus 397 kNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN-~Ln~LP~e~~~lv~Lq~LnlS~NrFr~--- 472 (565)
T KOG0472|consen 397 KNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNN-LLNDLPEEMGSLVRLQTLNLSFNRFRM--- 472 (565)
T ss_pred cchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccc-hhhhcchhhhhhhhhheeccccccccc---
Confidence 8888888888777777776666666667778888888999999999887 677888888888889999999887655
Q ss_pred cccccccccccccccccCCCC-CCCCCccEEecCCCCCCCCCCccccCCCCCCCeEecCCCcCcccCccccccCCCCEee
Q 001458 704 WYSYIPINLMRKSVALKLPSL-SGLCSLRKLNLTDCNLMEGALPSDIGNLCSLKELYLSKNSFVSLPTSITHLSKLLNIE 782 (1074)
Q Consensus 704 ~~~~~~~~~~~~~~~~~l~~l-~~l~~L~~L~Ls~~~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~ 782 (1074)
+|.+ ..+..|+.+-.++|++.. .-|+.+.++.+|..|||.+|.+..+|..++++.+|+.|+
T Consensus 473 -----------------lP~~~y~lq~lEtllas~nqi~~-vd~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLe 534 (565)
T KOG0472|consen 473 -----------------LPECLYELQTLETLLASNNQIGS-VDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLE 534 (565)
T ss_pred -----------------chHHHhhHHHHHHHHhccccccc-cChHHhhhhhhcceeccCCCchhhCChhhccccceeEEE
Confidence 3332 223345555556666643 333448888899999999999999999999999999999
Q ss_pred ccCCcC
Q 001458 783 LEDCKR 788 (1074)
Q Consensus 783 L~~c~~ 788 (1074)
+++++.
T Consensus 535 L~gNpf 540 (565)
T KOG0472|consen 535 LDGNPF 540 (565)
T ss_pred ecCCcc
Confidence 988863
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.93 E-value=2.7e-24 Score=278.00 Aligned_cols=314 Identities=30% Similarity=0.469 Sum_probs=251.6
Q ss_pred cCcchhcC-CCccEEeccCCCCCCcCCccccccccCceecC-----cCcccccCCCCCcEEeccCCCCCCcCchhhhcCC
Q 001458 471 IHPSLLLH-NKLIILNMKDCTSLITLPGKILMKSLEKLNLK-----SLPTTISGLKCLSTLDVSGDLKFREFPEIVEHME 544 (1074)
Q Consensus 471 ~~~~i~~l-~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~-----~l~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~ 544 (1074)
+|..+..+ .+|+.|.+.++ .+..+|..+...+|+.|++. .+|..+..+++|+.|+|+++.....+|. +..++
T Consensus 580 lp~~~~~lp~~Lr~L~~~~~-~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~ 657 (1153)
T PLN03210 580 LPEGFDYLPPKLRLLRWDKY-PLRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMAT 657 (1153)
T ss_pred cCcchhhcCcccEEEEecCC-CCCCCCCcCCccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc-cccCC
Confidence 34444433 34555655553 34555555555555555554 3566778899999999999888888885 78899
Q ss_pred CccEEEccCc-CCccCchhhhcCCCCCEEeccCCCCCccccccccCCCCCCEEEecCCCCCCccchhhcCCCCCCEEEcC
Q 001458 545 HLSELHLEGT-AIRGLPLSIELLSGLVLLNLKNCRSLEILPVTVSNLKCLRSLKLSGCSKLKKFPEIVRSMKDLSELFLD 623 (1074)
Q Consensus 545 ~L~~L~L~~~-~i~~lp~~~~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~Ls~~~~~~~~p~~~~~l~~L~~L~L~ 623 (1074)
+|+.|+|++| .+..+|..+..+++|+.|++++|..++.+|..+ ++++|+.|++++|..+..+|.. ..+|+.|+++
T Consensus 658 ~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~ 733 (1153)
T PLN03210 658 NLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLD 733 (1153)
T ss_pred cccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecC
Confidence 9999999985 567799999999999999999999999999766 8999999999999988888764 5689999999
Q ss_pred CCcccccCcchhccCCCCEeecCCCCCCcc-------ccchhcccCCCCEEEccCCcCCCcCcccccCCCCccEEEcCCC
Q 001458 624 GTSIKEVPSSIELLTKLELLNLSDCKNLVR-------LPSSIIALKSLKTLNLSGCFKLENVPETLGQIESLEELDISGT 696 (1074)
Q Consensus 624 ~~~l~~lp~~~~~l~~L~~L~L~~~~~l~~-------~~~~~~~l~~L~~L~L~~c~~l~~~p~~l~~l~~L~~L~L~~n 696 (1074)
+|.+..+|..+ .+++|+.|.+.++..... .+.....+++|+.|+|++|..+..+|..++++++|+.|++++|
T Consensus 734 ~n~i~~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C 812 (1153)
T PLN03210 734 ETAIEEFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENC 812 (1153)
T ss_pred CCccccccccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCC
Confidence 99999999876 589999999987643211 1122334579999999999999999999999999999999987
Q ss_pred CCCCCCCcccccccccccccccccCCCCCCCCCccEEecCCCCCCCCCCccccCCCCCCCeEecCCCcCcccCccccccC
Q 001458 697 AVPHSTSWYSYIPINLMRKSVALKLPSLSGLCSLRKLNLTDCNLMEGALPSDIGNLCSLKELYLSKNSFVSLPTSITHLS 776 (1074)
Q Consensus 697 ~i~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~i~~l~ 776 (1074)
..-. .+|...++++|+.|++++|.... .+|.. .++|+.|+|++|.++.+|.++..++
T Consensus 813 ~~L~-------------------~LP~~~~L~sL~~L~Ls~c~~L~-~~p~~---~~nL~~L~Ls~n~i~~iP~si~~l~ 869 (1153)
T PLN03210 813 INLE-------------------TLPTGINLESLESLDLSGCSRLR-TFPDI---STNISDLNLSRTGIEEVPWWIEKFS 869 (1153)
T ss_pred CCcC-------------------eeCCCCCccccCEEECCCCCccc-ccccc---ccccCEeECCCCCCccChHHHhcCC
Confidence 5321 14544478999999999998764 45543 4789999999999999999999999
Q ss_pred CCCEeeccCCcCCCcCCCCC---CCcceEeecCccccccch
Q 001458 777 KLLNIELEDCKRLQSLPQLP---PNIRQVRVNGCASLVTLL 814 (1074)
Q Consensus 777 ~L~~L~L~~c~~L~~lp~lp---~sL~~L~i~~C~~L~~l~ 814 (1074)
+|+.|+|++|++++.+|..+ ++|+.+++++|++|+.++
T Consensus 870 ~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~ 910 (1153)
T PLN03210 870 NLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEAS 910 (1153)
T ss_pred CCCEEECCCCCCcCccCcccccccCCCeeecCCCccccccc
Confidence 99999999999999998644 677888999999998765
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.92 E-value=1e-28 Score=257.37 Aligned_cols=392 Identities=25% Similarity=0.331 Sum_probs=235.1
Q ss_pred ceEEEecCCCCCCCCCCC-CCCCceEEEcCcCCcccccccccCCCCCcEEEccCCCCCCCCCCCCCCCCCcEEEecCccc
Q 001458 389 LRLLGWRGYPLKFLPSNL-QMDKTIEIYMCYSRIGELWKGIKHLDKLKVMILSHSENLIRMPDFTGAPNLEKLILEGCTR 467 (1074)
Q Consensus 389 L~~L~l~~~~l~~lp~~~-~~~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~l~~L~~L~L~~~~~ 467 (1074)
|.+|+.++|.+..+|+.+ .+..++.++.++|++.++|..+..+.+|+.+++++|......++++.+..|+.|+..+|.
T Consensus 70 l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~- 148 (565)
T KOG0472|consen 70 LTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQ- 148 (565)
T ss_pred eeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhccccc-
Confidence 444455555555555444 444555555555555555555555555555555555444444445555555554444332
Q ss_pred ccccCcchhcCCCccEEeccCCCCCCcCCccccccccCceecC-----cCcc----------------------cccCCC
Q 001458 468 LYEIHPSLLLHNKLIILNMKDCTSLITLPGKILMKSLEKLNLK-----SLPT----------------------TISGLK 520 (1074)
Q Consensus 468 l~~~~~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~-----~l~~----------------------~l~~l~ 520 (1074)
...+|.+++.+.+|..|++.++......|..+.++.|++++.. .+|. .|.+|.
T Consensus 149 i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs 228 (565)
T KOG0472|consen 149 ISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRFLPEFPGCS 228 (565)
T ss_pred cccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccccCCCCCccH
Confidence 3334444444444444444443322222222244444444432 2444 444555
Q ss_pred CCcEEeccCCCCCCcCchh-hhcCCCccEEEccCcCCccCchhhhcCCCCCEEeccCCCCCccccccccCCCCCCEEEec
Q 001458 521 CLSTLDVSGDLKFREFPEI-VEHMEHLSELHLEGTAIRGLPLSIELLSGLVLLNLKNCRSLEILPVTVSNLKCLRSLKLS 599 (1074)
Q Consensus 521 ~L~~L~L~~~~~~~~~~~~-l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~Ls 599 (1074)
.|+.|.+..|+ ++.+|.. ..++.+|..|+|+.|+++++|..+..+.+|..||+++|.+ ..+|.+++++ .|+.|-+.
T Consensus 229 ~L~Elh~g~N~-i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~i-s~Lp~sLgnl-hL~~L~le 305 (565)
T KOG0472|consen 229 LLKELHVGENQ-IEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDI-SSLPYSLGNL-HLKFLALE 305 (565)
T ss_pred HHHHHHhcccH-HHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCcc-ccCCcccccc-eeeehhhc
Confidence 55555544442 2333333 3366777777777777777777777777777777777653 4456667777 77777777
Q ss_pred CCCCCCcc-------------------------------------c----hhhcCCCCCCEEEcCCCcccccCcchhccC
Q 001458 600 GCSKLKKF-------------------------------------P----EIVRSMKDLSELFLDGTSIKEVPSSIELLT 638 (1074)
Q Consensus 600 ~~~~~~~~-------------------------------------p----~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~ 638 (1074)
||+....- | .....+.+.+.|++++-+++.+|.....-.
T Consensus 306 GNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~ 385 (565)
T KOG0472|consen 306 GNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAA 385 (565)
T ss_pred CCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHh
Confidence 76431100 0 001123355666666666666666543333
Q ss_pred C---CCEeecCCCCCCccccchhcccCCCCEEEccCCcCCCcCcccccCCCCccEEEcCCCCCCCCCCcccccccccccc
Q 001458 639 K---LELLNLSDCKNLVRLPSSIIALKSLKTLNLSGCFKLENVPETLGQIESLEELDISGTAVPHSTSWYSYIPINLMRK 715 (1074)
Q Consensus 639 ~---L~~L~L~~~~~l~~~~~~~~~l~~L~~L~L~~c~~l~~~p~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~~~~ 715 (1074)
. ....+++.|. +..+|..+..+..+.+.-+..+.+..-+|..+..+++|..|++++|.+.+
T Consensus 386 ~~~~Vt~VnfskNq-L~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~--------------- 449 (565)
T KOG0472|consen 386 KSEIVTSVNFSKNQ-LCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLND--------------- 449 (565)
T ss_pred hhcceEEEecccch-HhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhhh---------------
Confidence 3 5666777765 45566666666666655555666777788888888888888888887655
Q ss_pred cccccCCC-CCCCCCccEEecCCCCCCCCCCccccCCCCCCCeEecCCCcCcccCcc-ccccCCCCEeeccCCcCCCcCC
Q 001458 716 SVALKLPS-LSGLCSLRKLNLTDCNLMEGALPSDIGNLCSLKELYLSKNSFVSLPTS-ITHLSKLLNIELEDCKRLQSLP 793 (1074)
Q Consensus 716 ~~~~~l~~-l~~l~~L~~L~Ls~~~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~-i~~l~~L~~L~L~~c~~L~~lp 793 (1074)
+|. ++.+..|+.|+++.|.+- .+|..+..+..|+.+-.++|++..++.+ +..+.+|..|++.++ .++.+|
T Consensus 450 -----LP~e~~~lv~Lq~LnlS~NrFr--~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nN-dlq~IP 521 (565)
T KOG0472|consen 450 -----LPEEMGSLVRLQTLNLSFNRFR--MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNN-DLQQIP 521 (565)
T ss_pred -----cchhhhhhhhhheecccccccc--cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCC-chhhCC
Confidence 333 667778899999998774 5888888788888888888888888665 889999999999776 566666
Q ss_pred CC---CCCcceEeecCcc
Q 001458 794 QL---PPNIRQVRVNGCA 808 (1074)
Q Consensus 794 ~l---p~sL~~L~i~~C~ 808 (1074)
.. ..+|++|.+.|.+
T Consensus 522 p~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 522 PILGNMTNLRHLELDGNP 539 (565)
T ss_pred hhhccccceeEEEecCCc
Confidence 42 3677777777654
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.91 E-value=5.2e-27 Score=268.98 Aligned_cols=422 Identities=21% Similarity=0.211 Sum_probs=308.3
Q ss_pred hHHHhCCCCCceEEecCccCCCCcccc--CcCceEEEecCCCCCCCCCCC-CCCCceEEEcCcCCcccccccccCCCCCc
Q 001458 359 AKAFSKMTNLRLLKICNLQLPNGLEYL--SNRLRLLGWRGYPLKFLPSNL-QMDKTIEIYMCYSRIGELWKGIKHLDKLK 435 (1074)
Q Consensus 359 ~~~f~~l~~Lr~L~l~~~~l~~~~~~l--~~~L~~L~l~~~~l~~lp~~~-~~~~L~~L~L~~~~i~~l~~~~~~l~~L~ 435 (1074)
.++..+.-+|+.|++++|++...+..+ ...|+.|+++.|.+.++|... .+.+|+++.|.+|.+..+|.++..+++|+
T Consensus 38 l~~~~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~ 117 (1081)
T KOG0618|consen 38 LEFVEKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQ 117 (1081)
T ss_pred hHHhhheeeeEEeeccccccccCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccchhhcCchhHHhhhccc
Confidence 334445555999999999987654433 357999999999999999877 89999999999999999999999999999
Q ss_pred EEEccCCCCCCCCCCCCCCCCCcEEEecCc-------------------ccccccCcchhcCCCccEEeccCCCCCCcCC
Q 001458 436 VMILSHSENLIRMPDFTGAPNLEKLILEGC-------------------TRLYEIHPSLLLHNKLIILNMKDCTSLITLP 496 (1074)
Q Consensus 436 ~L~Ls~~~~~~~~~~~~~l~~L~~L~L~~~-------------------~~l~~~~~~i~~l~~L~~L~L~~~~~l~~lp 496 (1074)
+|++|.|.+...++-+..+..++.+..++| .....++..+..+++ .|+|++|... ..
T Consensus 118 ~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~--~~ 193 (1081)
T KOG0618|consen 118 YLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME--VL 193 (1081)
T ss_pred ccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe--eeecccchhh--hh
Confidence 999999986655544556655555555555 333333333333333 3555554332 11
Q ss_pred ccccccccCceecC--cCcccccCCCCCcEEeccCCCCCCcCchhhhcCCCccEEEccCcCCccCchhhhcCCCCCEEec
Q 001458 497 GKILMKSLEKLNLK--SLPTTISGLKCLSTLDVSGDLKFREFPEIVEHMEHLSELHLEGTAIRGLPLSIELLSGLVLLNL 574 (1074)
Q Consensus 497 ~~~~l~~L~~L~l~--~l~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L 574 (1074)
....+..|+.+... .+....-..++|+.|..++|......+. ..-.+|++++++.+.+..+|+|++.+.+|+.++.
T Consensus 194 dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~ 271 (1081)
T KOG0618|consen 194 DLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVH--PVPLNLQYLDISHNNLSNLPEWIGACANLEALNA 271 (1081)
T ss_pred hhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccc--cccccceeeecchhhhhcchHHHHhcccceEecc
Confidence 11123333333332 1222233445677777777766533222 2335789999999999999999999999999999
Q ss_pred cCCCCCccccccccCCCCCCEEEecCCCCCCccchhhcCCCCCCEEEcCCCcccccCcchhc-cC-CCCEeecCCCCCCc
Q 001458 575 KNCRSLEILPVTVSNLKCLRSLKLSGCSKLKKFPEIVRSMKDLSELFLDGTSIKEVPSSIEL-LT-KLELLNLSDCKNLV 652 (1074)
Q Consensus 575 ~~~~~~~~l~~~l~~l~~L~~L~Ls~~~~~~~~p~~~~~l~~L~~L~L~~~~l~~lp~~~~~-l~-~L~~L~L~~~~~l~ 652 (1074)
.+|.. ..+|..+...++|+.|.+..|. ++.+|.....+++|++|+|..|.+..+|..+-. +. .|..|+.+.|+...
T Consensus 272 n~N~l-~~lp~ri~~~~~L~~l~~~~ne-l~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~ 349 (1081)
T KOG0618|consen 272 NHNRL-VALPLRISRITSLVSLSAAYNE-LEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLST 349 (1081)
T ss_pred cchhH-HhhHHHHhhhhhHHHHHhhhhh-hhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccc
Confidence 99876 6777778888899999888864 456677778889999999999999988875432 22 36666666665433
Q ss_pred cccchhcccCCCCEEEccCCcCCCcCcccccCCCCccEEEcCCCCCCCCCCcccccccccccccccccCCCCCCCCCccE
Q 001458 653 RLPSSIIALKSLKTLNLSGCFKLENVPETLGQIESLEELDISGTAVPHSTSWYSYIPINLMRKSVALKLPSLSGLCSLRK 732 (1074)
Q Consensus 653 ~~~~~~~~l~~L~~L~L~~c~~l~~~p~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~ 732 (1074)
.....-...+.|+.|++.+|.........+.++.+|+.|+|++|.+..++. ..+.++..|++
T Consensus 350 lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpa------------------s~~~kle~Lee 411 (1081)
T KOG0618|consen 350 LPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPA------------------SKLRKLEELEE 411 (1081)
T ss_pred cccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCH------------------HHHhchHHhHH
Confidence 332233456788999999998888887888999999999999998876432 12677888999
Q ss_pred EecCCCCCCCCCCccccCCCCCCCeEecCCCcCcccCccccccCCCCEeeccCCcCCCcC--C-CCC-CCcceEeecCcc
Q 001458 733 LNLTDCNLMEGALPSDIGNLCSLKELYLSKNSFVSLPTSITHLSKLLNIELEDCKRLQSL--P-QLP-PNIRQVRVNGCA 808 (1074)
Q Consensus 733 L~Ls~~~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~l--p-~lp-~sL~~L~i~~C~ 808 (1074)
|+||+|.+. .+|..+..++.|++|...+|++..+| .+..++.|+.+|++.| .|+.+ | .+| |+|++|+++|.+
T Consensus 412 L~LSGNkL~--~Lp~tva~~~~L~tL~ahsN~l~~fP-e~~~l~qL~~lDlS~N-~L~~~~l~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 412 LNLSGNKLT--TLPDTVANLGRLHTLRAHSNQLLSFP-ELAQLPQLKVLDLSCN-NLSEVTLPEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred Hhcccchhh--hhhHHHHhhhhhHHHhhcCCceeech-hhhhcCcceEEecccc-hhhhhhhhhhCCCcccceeeccCCc
Confidence 999999986 58888999999999999999999999 8899999999999766 44433 3 377 899999999887
Q ss_pred cc
Q 001458 809 SL 810 (1074)
Q Consensus 809 ~L 810 (1074)
.+
T Consensus 488 ~l 489 (1081)
T KOG0618|consen 488 RL 489 (1081)
T ss_pred cc
Confidence 53
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.88 E-value=3.3e-25 Score=254.30 Aligned_cols=447 Identities=21% Similarity=0.248 Sum_probs=295.7
Q ss_pred CceEEecCccCCCC----ccccCcCceEEEecCCCCCCCCCCC-CCCCceEEEcCcCCcccccccccCCCCCcEEEccCC
Q 001458 368 LRLLKICNLQLPNG----LEYLSNRLRLLGWRGYPLKFLPSNL-QMDKTIEIYMCYSRIGELWKGIKHLDKLKVMILSHS 442 (1074)
Q Consensus 368 Lr~L~l~~~~l~~~----~~~l~~~L~~L~l~~~~l~~lp~~~-~~~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~~ 442 (1074)
|..|++..|-+-.. +..- -+|+.|++++|.+..+|..+ .+.+|+.|+++.|.|..+|....++.+|+++.|.+|
T Consensus 23 ~~~ln~~~N~~l~~pl~~~~~~-v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n 101 (1081)
T KOG0618|consen 23 LQILNLRRNSLLSRPLEFVEKR-VKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNN 101 (1081)
T ss_pred HHhhhccccccccCchHHhhhe-eeeEEeeccccccccCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccc
Confidence 56666666654321 1122 24999999999999999988 889999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCcEEEecCcccccccCcchhcCCCccEEeccCCCCCCcCCccc-cccccCceecC-cCcccccCCC
Q 001458 443 ENLIRMPDFTGAPNLEKLILEGCTRLYEIHPSLLLHNKLIILNMKDCTSLITLPGKI-LMKSLEKLNLK-SLPTTISGLK 520 (1074)
Q Consensus 443 ~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~~~~l~~lp~~~-~l~~L~~L~l~-~l~~~l~~l~ 520 (1074)
+....+..+..+.+|++|++++|. ...+|..+..+..+..+..++|..+..++... +...|+...+. .++..+..++
T Consensus 102 ~l~~lP~~~~~lknl~~LdlS~N~-f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~ 180 (1081)
T KOG0618|consen 102 RLQSLPASISELKNLQYLDLSFNH-FGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLT 180 (1081)
T ss_pred hhhcCchhHHhhhcccccccchhc-cCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhh
Confidence 866666669999999999999975 56778888888888888888874444444322 11222222222 3444555555
Q ss_pred CCcEEeccCCCCCCcCchhhhcCCCccEEEccCcCCccCchhhhcCCCCCEEeccCCCCCccccccccCCCCCCEEEecC
Q 001458 521 CLSTLDVSGDLKFREFPEIVEHMEHLSELHLEGTAIRGLPLSIELLSGLVLLNLKNCRSLEILPVTVSNLKCLRSLKLSG 600 (1074)
Q Consensus 521 ~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~Ls~ 600 (1074)
+ .|+|+.|... --.+..+.+|+.|....|.+..+.. ..++|+.|..+.|......+ -..-.+|++++++.
T Consensus 181 ~--~ldLr~N~~~---~~dls~~~~l~~l~c~rn~ls~l~~---~g~~l~~L~a~~n~l~~~~~--~p~p~nl~~~dis~ 250 (1081)
T KOG0618|consen 181 H--QLDLRYNEME---VLDLSNLANLEVLHCERNQLSELEI---SGPSLTALYADHNPLTTLDV--HPVPLNLQYLDISH 250 (1081)
T ss_pred e--eeecccchhh---hhhhhhccchhhhhhhhcccceEEe---cCcchheeeeccCcceeecc--ccccccceeeecch
Confidence 5 6888888655 1234566667777766666655432 23556666666666553322 12234566677766
Q ss_pred CCCCCccchhhcCCCCCCEEEcCCCcccccCcchhccCCCCEeecCCCCCCccccchhcccCCCCEEEccCCcCCCcCcc
Q 001458 601 CSKLKKFPEIVRSMKDLSELFLDGTSIKEVPSSIELLTKLELLNLSDCKNLVRLPSSIIALKSLKTLNLSGCFKLENVPE 680 (1074)
Q Consensus 601 ~~~~~~~p~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~L~~c~~l~~~p~ 680 (1074)
+. +..+|+++..+.+|+.+...+|.+..+|..+...++|+.|.+..|. +..+|.....+++|++|+|..|. +..+|+
T Consensus 251 n~-l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~ne-l~yip~~le~~~sL~tLdL~~N~-L~~lp~ 327 (1081)
T KOG0618|consen 251 NN-LSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNE-LEYIPPFLEGLKSLRTLDLQSNN-LPSLPD 327 (1081)
T ss_pred hh-hhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhh-hhhCCCcccccceeeeeeehhcc-ccccch
Confidence 53 3444566666777777777777776666666666677777666665 34455555566667777776663 333333
Q ss_pred c-ccCCC-CccEEEcCCCCCCCCCCcc-----cccccccccccc-cccCCCCCCCCCccEEecCCCCCCCCCCccc-cCC
Q 001458 681 T-LGQIE-SLEELDISGTAVPHSTSWY-----SYIPINLMRKSV-ALKLPSLSGLCSLRKLNLTDCNLMEGALPSD-IGN 751 (1074)
Q Consensus 681 ~-l~~l~-~L~~L~L~~n~i~~~~~~~-----~~~~~~~~~~~~-~~~l~~l~~l~~L~~L~Ls~~~~~~~~~p~~-l~~ 751 (1074)
. +.-+. +|..|..+.|.+...+..- .+..+.+..+.. ...+|.+.++.+|+.|+|++|.+. .+|+. +..
T Consensus 328 ~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~--~fpas~~~k 405 (1081)
T KOG0618|consen 328 NFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN--SFPASKLRK 405 (1081)
T ss_pred HHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc--cCCHHHHhc
Confidence 2 22221 1444444444443322110 011111111111 123678899999999999999985 46664 688
Q ss_pred CCCCCeEecCCCcCcccCccccccCCCCEeeccCCcCCCcCCCCC--CCcceEeecCccccccchhhhccccCccccccc
Q 001458 752 LCSLKELYLSKNSFVSLPTSITHLSKLLNIELEDCKRLQSLPQLP--PNIRQVRVNGCASLVTLLDALKLCKSDSTMIAC 829 (1074)
Q Consensus 752 l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~lp--~sL~~L~i~~C~~L~~l~~~~~~~~~~~~~~~~ 829 (1074)
+..|++|+||||.++.+|.++..++.|+.|...+| .+.++|++. +.|+.+|++ |..|+.+.-..... .+.
T Consensus 406 le~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN-~l~~fPe~~~l~qL~~lDlS-~N~L~~~~l~~~~p------~p~ 477 (1081)
T KOG0618|consen 406 LEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSN-QLLSFPELAQLPQLKVLDLS-CNNLSEVTLPEALP------SPN 477 (1081)
T ss_pred hHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCC-ceeechhhhhcCcceEEecc-cchhhhhhhhhhCC------Ccc
Confidence 99999999999999999999999999999998766 677888754 889999997 66666553222111 156
Q ss_pred cchhhhcCCc
Q 001458 830 LDSLKLLGNK 839 (1074)
Q Consensus 830 l~~l~~~~~~ 839 (1074)
|+.|+++||.
T Consensus 478 LkyLdlSGN~ 487 (1081)
T KOG0618|consen 478 LKYLDLSGNT 487 (1081)
T ss_pred cceeeccCCc
Confidence 7788888875
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.69 E-value=3.1e-16 Score=188.07 Aligned_cols=71 Identities=17% Similarity=0.142 Sum_probs=42.5
Q ss_pred CceEEEecCCCCCCCCCCCCCCCceEEEcCcCCcccccccccCCCCCcEEEccCCCCCCCCCCCCCCCCCcEEEecCc
Q 001458 388 RLRLLGWRGYPLKFLPSNLQMDKTIEIYMCYSRIGELWKGIKHLDKLKVMILSHSENLIRMPDFTGAPNLEKLILEGC 465 (1074)
Q Consensus 388 ~L~~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~l~~L~~L~L~~~ 465 (1074)
.-..|+++++.++++|..+. .+|+.|++.+|+++.+|.. .++|++|++++|++. .+|.+ .++|+.|++.+|
T Consensus 202 ~~~~LdLs~~~LtsLP~~l~-~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~Lt-sLP~l--p~sL~~L~Ls~N 272 (788)
T PRK15387 202 GNAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLT-SLPVL--PPGLLELSIFSN 272 (788)
T ss_pred CCcEEEcCCCCCCcCCcchh-cCCCEEEccCCcCCCCCCC---CCCCcEEEecCCccC-cccCc--ccccceeeccCC
Confidence 45567777777777777653 3677777777777777643 356666666666433 23321 234444544443
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.68 E-value=3.6e-16 Score=187.47 Aligned_cols=263 Identities=23% Similarity=0.221 Sum_probs=147.1
Q ss_pred CceEEecCccCCCCccccCcCceEEEecCCCCCCCCCCCCCCCceEEEcCcCCcccccccccCCCCCcEEEccCCCCCCC
Q 001458 368 LRLLKICNLQLPNGLEYLSNRLRLLGWRGYPLKFLPSNLQMDKTIEIYMCYSRIGELWKGIKHLDKLKVMILSHSENLIR 447 (1074)
Q Consensus 368 Lr~L~l~~~~l~~~~~~l~~~L~~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~~~~~~~ 447 (1074)
-..|+++++.+..-+..++.+|+.|.+.+|.++.+|.. +++|++|++++|+++.+|.. .++|+.|++++|.+. .
T Consensus 203 ~~~LdLs~~~LtsLP~~l~~~L~~L~L~~N~Lt~LP~l--p~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~L~-~ 276 (788)
T PRK15387 203 NAVLNVGESGLTTLPDCLPAHITTLVIPDNNLTSLPAL--PPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNPLT-H 276 (788)
T ss_pred CcEEEcCCCCCCcCCcchhcCCCEEEccCCcCCCCCCC--CCCCcEEEecCCccCcccCc---ccccceeeccCCchh-h
Confidence 44566666666554555556677777777777777753 56777777777777777643 356777777777533 3
Q ss_pred CCCCCCCCCCcEEEecCcccccccCcchhcCCCccEEeccCCCCCCcCCccccccccCceecCcCcccccCCCCCcEEec
Q 001458 448 MPDFTGAPNLEKLILEGCTRLYEIHPSLLLHNKLIILNMKDCTSLITLPGKILMKSLEKLNLKSLPTTISGLKCLSTLDV 527 (1074)
Q Consensus 448 ~~~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~l~~~l~~l~~L~~L~L 527 (1074)
+|.+ ..+|+.|++++|.. ..+|. .+++|+.|++++| .+..+|.. ..+|+.|++
T Consensus 277 Lp~l--p~~L~~L~Ls~N~L-t~LP~---~p~~L~~LdLS~N-~L~~Lp~l--------------------p~~L~~L~L 329 (788)
T PRK15387 277 LPAL--PSGLCKLWIFGNQL-TSLPV---LPPGLQELSVSDN-QLASLPAL--------------------PSELCKLWA 329 (788)
T ss_pred hhhc--hhhcCEEECcCCcc-ccccc---cccccceeECCCC-ccccCCCC--------------------ccccccccc
Confidence 3331 24567777777643 34443 2356777777765 23333321 012344444
Q ss_pred cCCCCCCcCchhhhcCCCccEEEccCcCCccCchhhhcCCCCCEEeccCCCCCccccccccCCCCCCEEEecCCCCCCcc
Q 001458 528 SGDLKFREFPEIVEHMEHLSELHLEGTAIRGLPLSIELLSGLVLLNLKNCRSLEILPVTVSNLKCLRSLKLSGCSKLKKF 607 (1074)
Q Consensus 528 ~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~Ls~~~~~~~~ 607 (1074)
++|.+. .+|.. ..+|+.|+|++|.++.+|.. ..+|+.|++++|.+. .+|.. ..+|+.|++++|... .+
T Consensus 330 s~N~L~-~LP~l---p~~Lq~LdLS~N~Ls~LP~l---p~~L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs~N~Lt-~L 397 (788)
T PRK15387 330 YNNQLT-SLPTL---PSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLT-SL 397 (788)
T ss_pred ccCccc-ccccc---ccccceEecCCCccCCCCCC---Ccccceehhhccccc-cCccc---ccccceEEecCCccc-CC
Confidence 555432 23431 13566777777777666642 345566666665543 23322 235666666665433 23
Q ss_pred chhhcCCCCCCEEEcCCCcccccCcchhccCCCCEeecCCCCCCccccchhcccCCCCEEEccCCcCCCcCcccc
Q 001458 608 PEIVRSMKDLSELFLDGTSIKEVPSSIELLTKLELLNLSDCKNLVRLPSSIIALKSLKTLNLSGCFKLENVPETL 682 (1074)
Q Consensus 608 p~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~L~~c~~l~~~p~~l 682 (1074)
|.. .++|+.|++++|.++.+|.. +.+|+.|++++|.+ ..+|..+..+++|+.|+|++|+..+..+..+
T Consensus 398 P~l---~s~L~~LdLS~N~LssIP~l---~~~L~~L~Ls~NqL-t~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 398 PVL---PSELKELMVSGNRLTSLPML---PSGLLSLSVYRNQL-TRLPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred CCc---ccCCCEEEccCCcCCCCCcc---hhhhhhhhhccCcc-cccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 332 24566666666666666543 23455666666553 3456556666666666666665555444433
No 17
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.66 E-value=8.8e-18 Score=176.30 Aligned_cols=289 Identities=20% Similarity=0.195 Sum_probs=157.0
Q ss_pred EEecCCCCCCCCCCCCCCCceEEEcCcCCccccc-ccccCCCCCcEEEccCCCCCCCCCC-CCCCCCCcEEEecCccccc
Q 001458 392 LGWRGYPLKFLPSNLQMDKTIEIYMCYSRIGELW-KGIKHLDKLKVMILSHSENLIRMPD-FTGAPNLEKLILEGCTRLY 469 (1074)
Q Consensus 392 L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~l~-~~~~~l~~L~~L~Ls~~~~~~~~~~-~~~l~~L~~L~L~~~~~l~ 469 (1074)
.+-++-.++.+|... +..-+++.|..|+|+.+| ..|+.+++||.||||+|.+....|+ |.+++.|..|.+.+++.+.
T Consensus 51 VdCr~~GL~eVP~~L-P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~ 129 (498)
T KOG4237|consen 51 VDCRGKGLTEVPANL-PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT 129 (498)
T ss_pred EEccCCCcccCcccC-CCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh
Confidence 344455566666554 456678888888888887 5689999999999999988877776 9999999999998877777
Q ss_pred ccCc-chhcCCCccEEeccCCCCCCcCCccccccccCceecCcCcccccCCCCCcEEeccCCCCCCcCchhhhcCCCccE
Q 001458 470 EIHP-SLLLHNKLIILNMKDCTSLITLPGKILMKSLEKLNLKSLPTTISGLKCLSTLDVSGDLKFREFPEIVEHMEHLSE 548 (1074)
Q Consensus 470 ~~~~-~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~ 548 (1074)
.+|. .|+.+..|+.|.+.-|..-. + ....+..+++|..|.+..|.+...--..+..+..++.
T Consensus 130 ~l~k~~F~gL~slqrLllNan~i~C-i----------------r~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~t 192 (498)
T KOG4237|consen 130 DLPKGAFGGLSSLQRLLLNANHINC-I----------------RQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKT 192 (498)
T ss_pred hhhhhHhhhHHHHHHHhcChhhhcc-h----------------hHHHHHHhhhcchhcccchhhhhhccccccchhccch
Confidence 7774 46667777766665542111 0 1123444455555555555333222235556666666
Q ss_pred EEccCcCCcc-------------CchhhhcCCCCCEEeccCCCCCccccccc-cCCCCCCEEEecCCCCCCccc-hhhcC
Q 001458 549 LHLEGTAIRG-------------LPLSIELLSGLVLLNLKNCRSLEILPVTV-SNLKCLRSLKLSGCSKLKKFP-EIVRS 613 (1074)
Q Consensus 549 L~L~~~~i~~-------------lp~~~~~l~~L~~L~L~~~~~~~~l~~~l-~~l~~L~~L~Ls~~~~~~~~p-~~~~~ 613 (1074)
+.+..|.+.. .|..++.+.-..-..+.+.+.-..-+..+ ..+.++..=-.+.|......| ..|..
T Consensus 193 lhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~ 272 (498)
T KOG4237|consen 193 LHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKK 272 (498)
T ss_pred HhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhh
Confidence 6665555221 11111111111111111111000000000 000011100111121222222 23556
Q ss_pred CCCCCEEEcCCCccccc-CcchhccCCCCEeecCCCCCCccccchhcccCCCCEEEccCCcCCCcCcccccCCCCccEEE
Q 001458 614 MKDLSELFLDGTSIKEV-PSSIELLTKLELLNLSDCKNLVRLPSSIIALKSLKTLNLSGCFKLENVPETLGQIESLEELD 692 (1074)
Q Consensus 614 l~~L~~L~L~~~~l~~l-p~~~~~l~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~L~~c~~l~~~p~~l~~l~~L~~L~ 692 (1074)
+++|++|+|++|.|+.+ +.+|..+..++.|.|..|++-..-...|.++..|++|+|.+|++....|..|..+.+|.+|.
T Consensus 273 L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~ 352 (498)
T KOG4237|consen 273 LPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLN 352 (498)
T ss_pred cccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeee
Confidence 66666666666666655 33456666666666666654444444555666666666666666666666666666666666
Q ss_pred cCCCCC
Q 001458 693 ISGTAV 698 (1074)
Q Consensus 693 L~~n~i 698 (1074)
+-+|.+
T Consensus 353 l~~Np~ 358 (498)
T KOG4237|consen 353 LLSNPF 358 (498)
T ss_pred hccCcc
Confidence 655544
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.63 E-value=1.3e-15 Score=184.15 Aligned_cols=114 Identities=22% Similarity=0.224 Sum_probs=69.4
Q ss_pred CCceEEecCccCCCCccccCcCceEEEecCCCCCCCCCCCCCCCceEEEcCcCCcccccccccCCCCCcEEEccCCCCCC
Q 001458 367 NLRLLKICNLQLPNGLEYLSNRLRLLGWRGYPLKFLPSNLQMDKTIEIYMCYSRIGELWKGIKHLDKLKVMILSHSENLI 446 (1074)
Q Consensus 367 ~Lr~L~l~~~~l~~~~~~l~~~L~~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~~~~~~ 446 (1074)
+...|++.++.+...+..++..|+.|++++|.++.+|..+. .+|++|++++|+++.+|..+. .+|+.|+|++|.+.
T Consensus 179 ~~~~L~L~~~~LtsLP~~Ip~~L~~L~Ls~N~LtsLP~~l~-~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L~- 254 (754)
T PRK15370 179 NKTELRLKILGLTTIPACIPEQITTLILDNNELKSLPENLQ-GNIKTLYANSNQLTSIPATLP--DTIQEMELSINRIT- 254 (754)
T ss_pred CceEEEeCCCCcCcCCcccccCCcEEEecCCCCCcCChhhc-cCCCEEECCCCccccCChhhh--ccccEEECcCCccC-
Confidence 45667777766666555566677777777777777776553 467777777777777765543 35777777777644
Q ss_pred CCCC-CCCCCCCcEEEecCcccccccCcchhcCCCccEEeccCC
Q 001458 447 RMPD-FTGAPNLEKLILEGCTRLYEIHPSLLLHNKLIILNMKDC 489 (1074)
Q Consensus 447 ~~~~-~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~~ 489 (1074)
.+|. +. .+|+.|++++|.. ..+|..+. .+|+.|++++|
T Consensus 255 ~LP~~l~--s~L~~L~Ls~N~L-~~LP~~l~--~sL~~L~Ls~N 293 (754)
T PRK15370 255 ELPERLP--SALQSLDLFHNKI-SCLPENLP--EELRYLSVYDN 293 (754)
T ss_pred cCChhHh--CCCCEEECcCCcc-CccccccC--CCCcEEECCCC
Confidence 3332 22 3566666665432 34444332 35566666554
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.63 E-value=1.1e-15 Score=184.79 Aligned_cols=96 Identities=14% Similarity=0.193 Sum_probs=68.4
Q ss_pred cCcCceEEEecCCCCCCCCCCCCCCCceEEEcCcCCcccccccccCCCCCcEEEccCCCCCCCCCC-CCCCCCCcEEEec
Q 001458 385 LSNRLRLLGWRGYPLKFLPSNLQMDKTIEIYMCYSRIGELWKGIKHLDKLKVMILSHSENLIRMPD-FTGAPNLEKLILE 463 (1074)
Q Consensus 385 l~~~L~~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~-~~~l~~L~~L~L~ 463 (1074)
+.++...|+++++.++.+|..+ +..|+.|++++|+++.+|..+. .+|+.|++++|.+. .+|. + .++|+.|+|+
T Consensus 176 l~~~~~~L~L~~~~LtsLP~~I-p~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l--~~~L~~L~Ls 249 (754)
T PRK15370 176 LKNNKTELRLKILGLTTIPACI-PEQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLT-SIPATL--PDTIQEMELS 249 (754)
T ss_pred cccCceEEEeCCCCcCcCCccc-ccCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccc-cCChhh--hccccEEECc
Confidence 3456788999999999999865 4689999999999999987654 58999999988754 4443 2 2467777777
Q ss_pred CcccccccCcchhcCCCccEEeccCC
Q 001458 464 GCTRLYEIHPSLLLHNKLIILNMKDC 489 (1074)
Q Consensus 464 ~~~~l~~~~~~i~~l~~L~~L~L~~~ 489 (1074)
+|... .+|..+. .+|+.|++++|
T Consensus 250 ~N~L~-~LP~~l~--s~L~~L~Ls~N 272 (754)
T PRK15370 250 INRIT-ELPERLP--SALQSLDLFHN 272 (754)
T ss_pred CCccC-cCChhHh--CCCCEEECcCC
Confidence 76543 5555443 35666666643
No 20
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.59 E-value=7.8e-17 Score=169.25 Aligned_cols=394 Identities=20% Similarity=0.195 Sum_probs=215.6
Q ss_pred ccCCCCccccCcCceEEEecCCCCCCCCCCC--CCCCceEEEcCcCCcccc-cccccCCCCCcEEEccCCCCCCCCCC--
Q 001458 376 LQLPNGLEYLSNRLRLLGWRGYPLKFLPSNL--QMDKTIEIYMCYSRIGEL-WKGIKHLDKLKVMILSHSENLIRMPD-- 450 (1074)
Q Consensus 376 ~~l~~~~~~l~~~L~~L~l~~~~l~~lp~~~--~~~~L~~L~L~~~~i~~l-~~~~~~l~~L~~L~Ls~~~~~~~~~~-- 450 (1074)
-.+.+-+..+|..-..+.+..|.|++||+.. .+++|+.|+|++|+|+.+ |..|+.++.|..|-+-++..++.+|.
T Consensus 56 ~GL~eVP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~ 135 (498)
T KOG4237|consen 56 KGLTEVPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGA 135 (498)
T ss_pred CCcccCcccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhH
Confidence 3455667778888899999999999999876 899999999999999998 68899999988877777444555553
Q ss_pred CCCCCCCcEEEecCcccccccCcchhcCCCccEEeccCCCCCCcCCc-cc-cccccCceecCcCc---------------
Q 001458 451 FTGAPNLEKLILEGCTRLYEIHPSLLLHNKLIILNMKDCTSLITLPG-KI-LMKSLEKLNLKSLP--------------- 513 (1074)
Q Consensus 451 ~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~~~~l~~lp~-~~-~l~~L~~L~l~~l~--------------- 513 (1074)
|.++..|+.|.+.-|...-.....+..+++|..|.+.++ .+..++. .+ .+.+++.+.+..-|
T Consensus 136 F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn-~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a 214 (498)
T KOG4237|consen 136 FGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDN-KIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLA 214 (498)
T ss_pred hhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccch-hhhhhccccccchhccchHhhhcCccccccccchhhhHHh
Confidence 999999999999888766666678888999999988874 3444444 22 45566666554322
Q ss_pred ---ccccCCCCCcEEeccCCCCCCcCchhhh-cCCCcc-EEEccCcCCccCc-hhhhcCCCCCEEeccCCCCCccccccc
Q 001458 514 ---TTISGLKCLSTLDVSGDLKFREFPEIVE-HMEHLS-ELHLEGTAIRGLP-LSIELLSGLVLLNLKNCRSLEILPVTV 587 (1074)
Q Consensus 514 ---~~l~~l~~L~~L~L~~~~~~~~~~~~l~-~l~~L~-~L~L~~~~i~~lp-~~~~~l~~L~~L~L~~~~~~~~l~~~l 587 (1074)
..++.........+.+..+...-+..+. .++.+. .+....+.....| ..|..+++|+.|+|++|.....-+.+|
T Consensus 215 ~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aF 294 (498)
T KOG4237|consen 215 MNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAF 294 (498)
T ss_pred hchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhh
Confidence 1122222211111111111111111000 000110 1111111111222 124555555566666555555555556
Q ss_pred cCCCCCCEEEecCCCCCCccchhhcCCCCCCEEEcCCCccccc-CcchhccCCCCEeecCCCCCC-----ccccchh---
Q 001458 588 SNLKCLRSLKLSGCSKLKKFPEIVRSMKDLSELFLDGTSIKEV-PSSIELLTKLELLNLSDCKNL-----VRLPSSI--- 658 (1074)
Q Consensus 588 ~~l~~L~~L~Ls~~~~~~~~p~~~~~l~~L~~L~L~~~~l~~l-p~~~~~l~~L~~L~L~~~~~l-----~~~~~~~--- 658 (1074)
.++..++.|.|..|+.-..-...|.++..|++|+|.+|+|+.+ |..|..+..|.+|+|-.|+.. .++.+++
T Consensus 295 e~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~ 374 (498)
T KOG4237|consen 295 EGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKK 374 (498)
T ss_pred cchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHHhhC
Confidence 6666666666665554444444555566666666666666543 344555556666665544321 1111111
Q ss_pred --------cccCCCCEEEccCCcCCC---cCcccccCCCCccEEEcCCCCCCCCCCcccccccccccccccccCCCCCCC
Q 001458 659 --------IALKSLKTLNLSGCFKLE---NVPETLGQIESLEELDISGTAVPHSTSWYSYIPINLMRKSVALKLPSLSGL 727 (1074)
Q Consensus 659 --------~~l~~L~~L~L~~c~~l~---~~p~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~~~~~~~~~l~~l~~l 727 (1074)
+....++.+.++....-. ..|+..+. +.-+.++-+.. .. ....-..+.....+|. +--
T Consensus 375 ~~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~------~~s~~cP~~c~-c~---~tVvRcSnk~lk~lp~-~iP 443 (498)
T KOG4237|consen 375 SVVGNPRCQSPGFVRQIPISDVAFGDFRCGGPEELGC------LTSSPCPPPCT-CL---DTVVRCSNKLLKLLPR-GIP 443 (498)
T ss_pred CCCCCCCCCCCchhccccchhccccccccCCccccCC------CCCCCCCCCcc-hh---hhhHhhcccchhhcCC-CCC
Confidence 112245555555432211 12221111 11111111100 00 0000000000001111 111
Q ss_pred CCccEEecCCCCCCCCCCccccCCCCCCCeEecCCCcCcccCc-cccccCCCCEeeccCC
Q 001458 728 CSLRKLNLTDCNLMEGALPSDIGNLCSLKELYLSKNSFVSLPT-SITHLSKLLNIELEDC 786 (1074)
Q Consensus 728 ~~L~~L~Ls~~~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~lp~-~i~~l~~L~~L~L~~c 786 (1074)
..-.+|.+.+|.+. .+|.. .+.+| .+++++|.+..+.. .+.++++|..|-|+.+
T Consensus 444 ~d~telyl~gn~~~--~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 444 VDVTELYLDGNAIT--SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred chhHHHhcccchhc--ccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence 24567888888885 47776 67888 89999999888754 4678888888888753
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.49 E-value=7.7e-16 Score=143.39 Aligned_cols=172 Identities=32% Similarity=0.557 Sum_probs=125.9
Q ss_pred CCCCCCEEEcCCCcccccCcchhccCCCCEeecCCCCCCccccchhcccCCCCEEEccCCcCCCcCcccccCCCCccEEE
Q 001458 613 SMKDLSELFLDGTSIKEVPSSIELLTKLELLNLSDCKNLVRLPSSIIALKSLKTLNLSGCFKLENVPETLGQIESLEELD 692 (1074)
Q Consensus 613 ~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~L~~c~~l~~~p~~l~~l~~L~~L~ 692 (1074)
++.+++.|.+++|.++.+|+.+..+.+|+.|++.+|. .+.+|.+++.++.|+.|+++-| .+..+|..|+.++.|+.||
T Consensus 31 ~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnq-ie~lp~~issl~klr~lnvgmn-rl~~lprgfgs~p~levld 108 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQ-IEELPTSISSLPKLRILNVGMN-RLNILPRGFGSFPALEVLD 108 (264)
T ss_pred chhhhhhhhcccCceeecCCcHHHhhhhhhhhcccch-hhhcChhhhhchhhhheecchh-hhhcCccccCCCchhhhhh
Confidence 3455566666666666666666666666666666654 4556666666666666666655 4556777777788888888
Q ss_pred cCCCCCCCCCCcccccccccccccccccCCC-CCCCCCccEEecCCCCCCCCCCccccCCCCCCCeEecCCCcCcccCcc
Q 001458 693 ISGTAVPHSTSWYSYIPINLMRKSVALKLPS-LSGLCSLRKLNLTDCNLMEGALPSDIGNLCSLKELYLSKNSFVSLPTS 771 (1074)
Q Consensus 693 L~~n~i~~~~~~~~~~~~~~~~~~~~~~l~~-l~~l~~L~~L~Ls~~~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~ 771 (1074)
++.|++... .+|. |-.+..|+-|.|++|.+ +.+|.+++.+++|+.|.+.+|.+.++|..
T Consensus 109 ltynnl~e~------------------~lpgnff~m~tlralyl~dndf--e~lp~dvg~lt~lqil~lrdndll~lpke 168 (264)
T KOG0617|consen 109 LTYNNLNEN------------------SLPGNFFYMTTLRALYLGDNDF--EILPPDVGKLTNLQILSLRDNDLLSLPKE 168 (264)
T ss_pred ccccccccc------------------cCCcchhHHHHHHHHHhcCCCc--ccCChhhhhhcceeEEeeccCchhhCcHH
Confidence 877776542 1343 56677889999999988 47999999999999999999999999999
Q ss_pred ccccCCCCEeeccCCcCCCcCCCCCCCcceEeecCcccc
Q 001458 772 ITHLSKLLNIELEDCKRLQSLPQLPPNIRQVRVNGCASL 810 (1074)
Q Consensus 772 i~~l~~L~~L~L~~c~~L~~lp~lp~sL~~L~i~~C~~L 810 (1074)
++.+..|++|.+.+++ + .-+||.|-.|++-+....
T Consensus 169 ig~lt~lrelhiqgnr-l---~vlppel~~l~l~~~k~v 203 (264)
T KOG0617|consen 169 IGDLTRLRELHIQGNR-L---TVLPPELANLDLVGNKQV 203 (264)
T ss_pred HHHHHHHHHHhcccce-e---eecChhhhhhhhhhhHHH
Confidence 9999999999999984 3 345666666666555433
No 22
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.47 E-value=1.6e-14 Score=162.78 Aligned_cols=41 Identities=22% Similarity=0.273 Sum_probs=17.6
Q ss_pred cCCCCCcEEeccCCCCCC----cCchhhhcCCCccEEEccCcCCc
Q 001458 517 SGLKCLSTLDVSGDLKFR----EFPEIVEHMEHLSELHLEGTAIR 557 (1074)
Q Consensus 517 ~~l~~L~~L~L~~~~~~~----~~~~~l~~l~~L~~L~L~~~~i~ 557 (1074)
..+.+|+.|++++|.... .++..+...++|++|+++++.+.
T Consensus 20 ~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~ 64 (319)
T cd00116 20 PKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETG 64 (319)
T ss_pred HHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccC
Confidence 334445555555444322 13333344444555555444443
No 23
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.45 E-value=2e-14 Score=161.98 Aligned_cols=239 Identities=25% Similarity=0.230 Sum_probs=125.2
Q ss_pred cCchhhhcCCCccEEEccCcCCcc-----CchhhhcCCCCCEEeccCCCCC------ccccccccCCCCCCEEEecCCCC
Q 001458 535 EFPEIVEHMEHLSELHLEGTAIRG-----LPLSIELLSGLVLLNLKNCRSL------EILPVTVSNLKCLRSLKLSGCSK 603 (1074)
Q Consensus 535 ~~~~~l~~l~~L~~L~L~~~~i~~-----lp~~~~~l~~L~~L~L~~~~~~------~~l~~~l~~l~~L~~L~Ls~~~~ 603 (1074)
.....+..+.+|+.|+++++.++. ++..+...++|++|+++++... ..++..+..+++|+.|++++|..
T Consensus 14 ~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 93 (319)
T cd00116 14 RATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNAL 93 (319)
T ss_pred chHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCC
Confidence 334455555666666666666633 4444555566666666665443 11233455566666666666665
Q ss_pred CCccchhhcCCCC---CCEEEcCCCccc-----ccCcchhcc-CCCCEeecCCCCCCc----cccchhcccCCCCEEEcc
Q 001458 604 LKKFPEIVRSMKD---LSELFLDGTSIK-----EVPSSIELL-TKLELLNLSDCKNLV----RLPSSIIALKSLKTLNLS 670 (1074)
Q Consensus 604 ~~~~p~~~~~l~~---L~~L~L~~~~l~-----~lp~~~~~l-~~L~~L~L~~~~~l~----~~~~~~~~l~~L~~L~L~ 670 (1074)
....+..+..+.+ |++|++++|.+. .+...+..+ ++|+.|++++|.... .++..+..+++|++|+++
T Consensus 94 ~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~ 173 (319)
T cd00116 94 GPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLA 173 (319)
T ss_pred ChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECc
Confidence 5444444433333 666666666554 122234444 666666666666442 223344455666666666
Q ss_pred CCcCCC----cCcccccCCCCccEEEcCCCCCCCCCCcccccccccccccccccCCCCCCCCCccEEecCCCCCCCCCCc
Q 001458 671 GCFKLE----NVPETLGQIESLEELDISGTAVPHSTSWYSYIPINLMRKSVALKLPSLSGLCSLRKLNLTDCNLMEGALP 746 (1074)
Q Consensus 671 ~c~~l~----~~p~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~~~~~~~p 746 (1074)
+|...+ .++..+..+++|+.|++++|.+..... ......+..+++|++|++++|.+....+.
T Consensus 174 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~--------------~~l~~~~~~~~~L~~L~ls~n~l~~~~~~ 239 (319)
T cd00116 174 NNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGA--------------SALAETLASLKSLEVLNLGDNNLTDAGAA 239 (319)
T ss_pred CCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHH--------------HHHHHHhcccCCCCEEecCCCcCchHHHH
Confidence 665442 223334455566666666665542110 00001134456666777776665431111
Q ss_pred cccC----CCCCCCeEecCCCcCc-----ccCccccccCCCCEeeccCCc
Q 001458 747 SDIG----NLCSLKELYLSKNSFV-----SLPTSITHLSKLLNIELEDCK 787 (1074)
Q Consensus 747 ~~l~----~l~~L~~L~Ls~n~l~-----~lp~~i~~l~~L~~L~L~~c~ 787 (1074)
.... ..+.|+.|++++|.++ .++..+..+++|+.+++++|+
T Consensus 240 ~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~ 289 (319)
T cd00116 240 ALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNK 289 (319)
T ss_pred HHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCC
Confidence 1111 2356677777766664 233444555666777776664
No 24
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.40 E-value=7e-15 Score=137.07 Aligned_cols=163 Identities=28% Similarity=0.428 Sum_probs=132.5
Q ss_pred cCCCCCcEEeccCCCCCCcCchhhhcCCCccEEEccCcCCccCchhhhcCCCCCEEeccCCCCCccccccccCCCCCCEE
Q 001458 517 SGLKCLSTLDVSGDLKFREFPEIVEHMEHLSELHLEGTAIRGLPLSIELLSGLVLLNLKNCRSLEILPVTVSNLKCLRSL 596 (1074)
Q Consensus 517 ~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L 596 (1074)
.++.+++.|.+++|. ...+|..+..+.+|+.|++.+|.|+++|.+++.+++|+.|++.-|+ +..+|..|+.+|.|+.|
T Consensus 30 f~~s~ITrLtLSHNK-l~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnr-l~~lprgfgs~p~levl 107 (264)
T KOG0617|consen 30 FNMSNITRLTLSHNK-LTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNR-LNILPRGFGSFPALEVL 107 (264)
T ss_pred cchhhhhhhhcccCc-eeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhh-hhcCccccCCCchhhhh
Confidence 344556667778884 4455666888999999999999999999999999999999998664 66788899999999999
Q ss_pred EecCCCCC-CccchhhcCCCCCCEEEcCCCcccccCcchhccCCCCEeecCCCCCCccccchhcccCCCCEEEccCCcCC
Q 001458 597 KLSGCSKL-KKFPEIVRSMKDLSELFLDGTSIKEVPSSIELLTKLELLNLSDCKNLVRLPSSIIALKSLKTLNLSGCFKL 675 (1074)
Q Consensus 597 ~Ls~~~~~-~~~p~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~L~~c~~l 675 (1074)
+|+.|+.. ..+|..|..|..|+.|.++.|.++.+|..++.+++|+.|.++.|. +-++|..++.+..|++|++.+|. +
T Consensus 108 dltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdnd-ll~lpkeig~lt~lrelhiqgnr-l 185 (264)
T KOG0617|consen 108 DLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDND-LLSLPKEIGDLTRLRELHIQGNR-L 185 (264)
T ss_pred hccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCc-hhhCcHHHHHHHHHHHHhcccce-e
Confidence 99988765 457888888899999999999999999999999999999999887 45678888888888888888874 4
Q ss_pred CcCccccc
Q 001458 676 ENVPETLG 683 (1074)
Q Consensus 676 ~~~p~~l~ 683 (1074)
..+|..++
T Consensus 186 ~vlppel~ 193 (264)
T KOG0617|consen 186 TVLPPELA 193 (264)
T ss_pred eecChhhh
Confidence 44554443
No 25
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.28 E-value=1.4e-10 Score=150.03 Aligned_cols=283 Identities=16% Similarity=0.159 Sum_probs=174.2
Q ss_pred HHHHHhhcCCCCCeEEEEEEccCCCcHHHHHHHHHHHhcccccceEEEeechhhh-ccCChHHHHHHHHHHHhcccCCc-
Q 001458 6 EKLRFLMDSGSSDVRMIGICGMGGLGKTTIARVVYDLISHEFEASGFLDNVREIS-SKGGLVSLQRQLLSQLLKLADNS- 83 (1074)
Q Consensus 6 ~~l~~lL~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s-~~~~~~~l~~~ll~~l~~~~~~~- 83 (1074)
.+|...|+. ....+++.|.|++|.||||++..+.+.. ..++|+. .. ...+...+...++..+.......
T Consensus 20 ~rl~~~l~~-~~~~~~~~v~apaG~GKTtl~~~~~~~~----~~~~w~~----l~~~d~~~~~f~~~l~~~l~~~~~~~~ 90 (903)
T PRK04841 20 ERLLAKLSG-ANNYRLVLVTSPAGYGKTTLISQWAAGK----NNLGWYS----LDESDNQPERFASYLIAALQQATNGHC 90 (903)
T ss_pred hHHHHHHhc-ccCCCeEEEECCCCCCHHHHHHHHHHhC----CCeEEEe----cCcccCCHHHHHHHHHHHHHHhcCccc
Confidence 456666663 3467899999999999999999988642 3578885 32 22344445555555542111110
Q ss_pred --c---------ccccchHHHHHhhhC--CCeEEEEEcCCCChH------HHHHHhcCCCCCCCCCEEEEEeCChhhhh-
Q 001458 84 --I---------WNVFDGIDMLGSRLQ--RKKVLLVIDDVVDVK------QLQSLAGNREWFGSGSRIIITSRDEHLLK- 143 (1074)
Q Consensus 84 --~---------~~~~~~~~~i~~~L~--~kr~LlVLDdv~~~~------~l~~l~~~~~~~~~gs~IiiTTR~~~v~~- 143 (1074)
. .+.......+...+. +++++|||||+...+ .+..+... ..++.++|||||...-..
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~---~~~~~~lv~~sR~~~~~~~ 167 (903)
T PRK04841 91 SKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRH---QPENLTLVVLSRNLPPLGI 167 (903)
T ss_pred chhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHh---CCCCeEEEEEeCCCCCCch
Confidence 0 111122233333333 578999999997643 34444433 346778889999842111
Q ss_pred -hc-CCCceecCC----CCChHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCCchHHHHHHhhcCCCCHHHHHHHHH
Q 001458 144 -TH-GVDEVYKPH----GLNYDEALQLFNMKAFKTYQPLQECVQLSARIIRYAGGLPLALEVLGSFLSGRSVDEWRSTLE 217 (1074)
Q Consensus 144 -~~-~~~~~~~l~----~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~g~~L~~~~~~~w~~~l~ 217 (1074)
.. ......++. +|+.+|+.++|....... . ..+...++.+.++|.|+++..++..+...... ......
T Consensus 168 ~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~--~---~~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~-~~~~~~ 241 (903)
T PRK04841 168 ANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSP--I---EAAESSRLCDDVEGWATALQLIALSARQNNSS-LHDSAR 241 (903)
T ss_pred HhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCC--C---CHHHHHHHHHHhCChHHHHHHHHHHHhhCCCc-hhhhhH
Confidence 11 112234555 899999999997654221 1 22446789999999999999988776543210 011112
Q ss_pred HHhcCCCchhHHHHhhc-cccCcHhhhhhheeeecccCCCCHHHHHHHhhhCCCCcccchhhhhcccceEE-e---CCeE
Q 001458 218 RLEIEPPSEILDILQIS-FDGLQELEKKIFLDIACFFKGNDRDYVTNFLEGCGFHPVIGIRVLIEKCLITV-H---NNTL 292 (1074)
Q Consensus 218 ~l~~~~~~~i~~~l~~s-y~~L~~~~k~~fl~~a~f~~~~~~~~l~~~~~~~g~~~~~~i~~L~~~sLi~~-~---~~~~ 292 (1074)
.+...+...+.+.+.-. ++.||+..++.++..|++. .+..+.+..+.... .....++.|.+.+++.. . ..+|
T Consensus 242 ~~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~-~~~~~l~~~l~~~~--~~~~~L~~l~~~~l~~~~~~~~~~~y 318 (903)
T PRK04841 242 RLAGINASHLSDYLVEEVLDNVDLETRHFLLRCSVLR-SMNDALIVRVTGEE--NGQMRLEELERQGLFIQRMDDSGEWF 318 (903)
T ss_pred hhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccc-cCCHHHHHHHcCCC--cHHHHHHHHHHCCCeeEeecCCCCEE
Confidence 22222234566654444 7899999999999999986 55555444443211 12456788889998653 2 2378
Q ss_pred ehHHHHHHHHHHHhhcc
Q 001458 293 WMHDLLQELGQQIVQRQ 309 (1074)
Q Consensus 293 ~mHdli~~~~~~i~~~~ 309 (1074)
..|++++++.+.....+
T Consensus 319 r~H~L~r~~l~~~l~~~ 335 (903)
T PRK04841 319 RYHPLFASFLRHRCQWE 335 (903)
T ss_pred ehhHHHHHHHHHHHHhc
Confidence 99999999998876443
No 26
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.15 E-value=5.4e-11 Score=146.63 Aligned_cols=106 Identities=19% Similarity=0.181 Sum_probs=53.2
Q ss_pred CCceEEecCccCCCCccccC-cCceEEEecCCC--CCCCCCCC--CCCCceEEEcCcC-CcccccccccCCCCCcEEEcc
Q 001458 367 NLRLLKICNLQLPNGLEYLS-NRLRLLGWRGYP--LKFLPSNL--QMDKTIEIYMCYS-RIGELWKGIKHLDKLKVMILS 440 (1074)
Q Consensus 367 ~Lr~L~l~~~~l~~~~~~l~-~~L~~L~l~~~~--l~~lp~~~--~~~~L~~L~L~~~-~i~~l~~~~~~l~~L~~L~Ls 440 (1074)
..|...+.++.+........ ..|+.|-+.+|. +..++..| .++.|+.|||++| .+.++|..++.|-+||+|+|+
T Consensus 524 ~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~ 603 (889)
T KOG4658|consen 524 SVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLS 603 (889)
T ss_pred heeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhccccc
Confidence 45666666666543222221 147777776664 55555433 4455555555532 334445555555555555444
Q ss_pred CCCCCCCCCCCCCCCCCcEEEecCcccccccCcchhcCCCccEEeccCCCCCCcCC
Q 001458 441 HSENLIRMPDFTGAPNLEKLILEGCTRLYEIHPSLLLHNKLIILNMKDCTSLITLP 496 (1074)
Q Consensus 441 ~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~~~~l~~lp 496 (1074)
++.+ ..+|.+++++++|.+|++..+..+..+|
T Consensus 604 ~t~I------------------------~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~ 635 (889)
T KOG4658|consen 604 DTGI------------------------SHLPSGLGNLKKLIYLNLEVTGRLESIP 635 (889)
T ss_pred CCCc------------------------cccchHHHHHHhhheecccccccccccc
Confidence 4433 3455555555555555555544444333
No 27
>PF05729 NACHT: NACHT domain
Probab=99.08 E-value=6.6e-10 Score=111.85 Aligned_cols=141 Identities=24% Similarity=0.301 Sum_probs=87.4
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHhcccc------cceEEEeechhhhccCChHHHHHHHHHHHhcccCCccccccchHHH
Q 001458 20 RMIGICGMGGLGKTTIARVVYDLISHEF------EASGFLDNVREISSKGGLVSLQRQLLSQLLKLADNSIWNVFDGIDM 93 (1074)
Q Consensus 20 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F------~~~~~~~~~~~~s~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~ 93 (1074)
|++.|.|.+|+||||+++.+++.+.... ...+| ...+..........+...+..+... ......+...
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~~~~~----~~~~~~~~~~- 74 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFF-FSLRDISDSNNSRSLADLLFDQLPE----SIAPIEELLQ- 74 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEE-EeehhhhhccccchHHHHHHHhhcc----chhhhHHHHH-
Confidence 6899999999999999999998765443 33333 3344443332222344444443211 1111111111
Q ss_pred HHhhhCCCeEEEEEcCCCChHH-------------HHHHhcCCCCCCCCCEEEEEeCChhh---hhhcCCCceecCCCCC
Q 001458 94 LGSRLQRKKVLLVIDDVVDVKQ-------------LQSLAGNREWFGSGSRIIITSRDEHL---LKTHGVDEVYKPHGLN 157 (1074)
Q Consensus 94 i~~~L~~kr~LlVLDdv~~~~~-------------l~~l~~~~~~~~~gs~IiiTTR~~~v---~~~~~~~~~~~l~~L~ 157 (1074)
.-.-+.++++||+|++|+... +..+... ...++.+||||+|.... .........+++.+|+
T Consensus 75 -~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~ 151 (166)
T PF05729_consen 75 -ELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQ--ALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFS 151 (166)
T ss_pred -HHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhh--ccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCC
Confidence 112257899999999987643 1222221 12578999999999765 3334445689999999
Q ss_pred hHHHHHHHHHhh
Q 001458 158 YDEALQLFNMKA 169 (1074)
Q Consensus 158 ~~ea~~Lf~~~a 169 (1074)
+++..+++.++.
T Consensus 152 ~~~~~~~~~~~f 163 (166)
T PF05729_consen 152 EEDIKQYLRKYF 163 (166)
T ss_pred HHHHHHHHHHHh
Confidence 999999997653
No 28
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.02 E-value=4.7e-11 Score=121.41 Aligned_cols=136 Identities=27% Similarity=0.345 Sum_probs=82.9
Q ss_pred hcCCCCCCEEEcCCCcccccCcchhccCCCCEeecCCCCCCccccchhcccCCCCEEEccCCcCCCcCcccccCCCCccE
Q 001458 611 VRSMKDLSELFLDGTSIKEVPSSIELLTKLELLNLSDCKNLVRLPSSIIALKSLKTLNLSGCFKLENVPETLGQIESLEE 690 (1074)
Q Consensus 611 ~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~L~~c~~l~~~p~~l~~l~~L~~ 690 (1074)
+.....|++|+|++|.|+.+..+..-.|+++.|+++.|.+...- .+..+++|+.|+|++|. +..+..+-..+.+.++
T Consensus 280 ~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~--nLa~L~~L~~LDLS~N~-Ls~~~Gwh~KLGNIKt 356 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQ--NLAELPQLQLLDLSGNL-LAECVGWHLKLGNIKT 356 (490)
T ss_pred cchHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeeh--hhhhcccceEeecccch-hHhhhhhHhhhcCEee
Confidence 33456788999999999999988888999999999988765442 25667777777777763 3333333344555566
Q ss_pred EEcCCCCCCCCCCcccccccccccccccccCCCCCCCCCccEEecCCCCCCCCCCccccCCCCCCCeEecCCCcCcccC
Q 001458 691 LDISGTAVPHSTSWYSYIPINLMRKSVALKLPSLSGLCSLRKLNLTDCNLMEGALPSDIGNLCSLKELYLSKNSFVSLP 769 (1074)
Q Consensus 691 L~L~~n~i~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~lp 769 (1074)
|.+++|.+.+ +..+..+-+|..||+++|++.+-.--..++.+|.|+.|.|.+|.+..+|
T Consensus 357 L~La~N~iE~--------------------LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 357 LKLAQNKIET--------------------LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSV 415 (490)
T ss_pred eehhhhhHhh--------------------hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccc
Confidence 6666665543 2224444555555555555533222334455555555555555544443
No 29
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.95 E-value=1.4e-10 Score=124.57 Aligned_cols=206 Identities=20% Similarity=0.224 Sum_probs=107.8
Q ss_pred hhcCCCccEEEccCcCCccCch--hhhcCCCCCEEeccCCCCCccc--cccccCCCCCCEEEecCCCCCCccchhhcCCC
Q 001458 540 VEHMEHLSELHLEGTAIRGLPL--SIELLSGLVLLNLKNCRSLEIL--PVTVSNLKCLRSLKLSGCSKLKKFPEIVRSMK 615 (1074)
Q Consensus 540 l~~l~~L~~L~L~~~~i~~lp~--~~~~l~~L~~L~L~~~~~~~~l--~~~l~~l~~L~~L~Ls~~~~~~~~p~~~~~l~ 615 (1074)
-+++++|+...|.++.+...+. ....+++++.|+|+.|-..... -.....||+|+.|+|+.|
T Consensus 117 Qsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~N-------------- 182 (505)
T KOG3207|consen 117 QSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSN-------------- 182 (505)
T ss_pred hhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccc--------------
Confidence 3456677777777777666553 3455566666666655433221 112334455555555544
Q ss_pred CCCEEEcCCCcccccCcc--hhccCCCCEeecCCCCCCc-cccchhcccCCCCEEEccCCcCCCcCcccccCCCCccEEE
Q 001458 616 DLSELFLDGTSIKEVPSS--IELLTKLELLNLSDCKNLV-RLPSSIIALKSLKTLNLSGCFKLENVPETLGQIESLEELD 692 (1074)
Q Consensus 616 ~L~~L~L~~~~l~~lp~~--~~~l~~L~~L~L~~~~~l~-~~~~~~~~l~~L~~L~L~~c~~l~~~p~~l~~l~~L~~L~ 692 (1074)
.+...-++ -..++.|+.|.|+.|.... .+......+|+|+.|++..|...........-+..|++|+
T Consensus 183 ----------rl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~Ld 252 (505)
T KOG3207|consen 183 ----------RLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELD 252 (505)
T ss_pred ----------cccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhcc
Confidence 33321111 1234455555555554331 1222333455555555555532222222233445566666
Q ss_pred cCCCCCCCCCCcccccccccccccccccCCCCCCCCCccEEecCCCCCCCCCCccc-----cCCCCCCCeEecCCCcCcc
Q 001458 693 ISGTAVPHSTSWYSYIPINLMRKSVALKLPSLSGLCSLRKLNLTDCNLMEGALPSD-----IGNLCSLKELYLSKNSFVS 767 (1074)
Q Consensus 693 L~~n~i~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~~~~~~~p~~-----l~~l~~L~~L~Ls~n~l~~ 767 (1074)
|++|++.++.. .+....++.|+.|+++.|.+.+-.+|+. ...+++|+.|+++.|++..
T Consensus 253 Ls~N~li~~~~-----------------~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~ 315 (505)
T KOG3207|consen 253 LSNNNLIDFDQ-----------------GYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRD 315 (505)
T ss_pred ccCCccccccc-----------------ccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCcccc
Confidence 66666544321 2335567777777777777766555554 4567788888888887764
Q ss_pred cCc--cccccCCCCEeeccCC
Q 001458 768 LPT--SITHLSKLLNIELEDC 786 (1074)
Q Consensus 768 lp~--~i~~l~~L~~L~L~~c 786 (1074)
.+. .+..+++|+.|.+..+
T Consensus 316 w~sl~~l~~l~nlk~l~~~~n 336 (505)
T KOG3207|consen 316 WRSLNHLRTLENLKHLRITLN 336 (505)
T ss_pred ccccchhhccchhhhhhcccc
Confidence 442 3555666666665443
No 30
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.95 E-value=3e-08 Score=115.02 Aligned_cols=237 Identities=19% Similarity=0.178 Sum_probs=138.0
Q ss_pred hhHHHHHHHhhcCC--CCCeEEEEEEccCCCcHHHHHHHHHHHhccccc--ceEEEeechhhhccCChHHHHHHHHHHHh
Q 001458 2 DSRCEKLRFLMDSG--SSDVRMIGICGMGGLGKTTIARVVYDLISHEFE--ASGFLDNVREISSKGGLVSLQRQLLSQLL 77 (1074)
Q Consensus 2 ~~~~~~l~~lL~~~--~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~--~~~~~~~~~~~s~~~~~~~l~~~ll~~l~ 77 (1074)
|.++++|...+... ....+.+.|+|++|+||||+++.+++....... ..+++. + ....+...+..+++.++.
T Consensus 36 e~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in-~---~~~~~~~~~~~~i~~~l~ 111 (394)
T PRK00411 36 EEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYIN-C---QIDRTRYAIFSEIARQLF 111 (394)
T ss_pred HHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEE-C---CcCCCHHHHHHHHHHHhc
Confidence 45677777777432 233456789999999999999999997755442 233443 2 222345677788888865
Q ss_pred cccC-CccccccchHHHHHhhhC--CCeEEEEEcCCCChH------HHHHHhcCCCCCCCCCE--EEEEeCChhhhhhcC
Q 001458 78 KLAD-NSIWNVFDGIDMLGSRLQ--RKKVLLVIDDVVDVK------QLQSLAGNREWFGSGSR--IIITSRDEHLLKTHG 146 (1074)
Q Consensus 78 ~~~~-~~~~~~~~~~~~i~~~L~--~kr~LlVLDdv~~~~------~l~~l~~~~~~~~~gs~--IiiTTR~~~v~~~~~ 146 (1074)
.... ....+..+....+.+.++ +++++||||+++... .+..+...... .++++ ||.++++..+.....
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~-~~~~~v~vI~i~~~~~~~~~l~ 190 (394)
T PRK00411 112 GHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEE-YPGARIGVIGISSDLTFLYILD 190 (394)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhc-cCCCeEEEEEEECCcchhhhcC
Confidence 4221 112234455666666665 456899999998754 24444332221 13333 666766654332211
Q ss_pred -------CCceecCCCCChHHHHHHHHHhhhcC---CCCChh-HHHHHHHHHHHhCCCchHHHHHHhhc-----CC---C
Q 001458 147 -------VDEVYKPHGLNYDEALQLFNMKAFKT---YQPLQE-CVQLSARIIRYAGGLPLALEVLGSFL-----SG---R 207 (1074)
Q Consensus 147 -------~~~~~~l~~L~~~ea~~Lf~~~a~~~---~~~~~~-~~~~~~~i~~~~~GlPLal~~~g~~L-----~~---~ 207 (1074)
....+.+++++.++..+++..++-.. ....++ .+.+++......|..+.|+.++-... .+ -
T Consensus 191 ~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~~~~~I 270 (394)
T PRK00411 191 PRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAEREGSRKV 270 (394)
T ss_pred HHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCCCc
Confidence 12467899999999999998776322 122222 22233333222344667766654321 11 2
Q ss_pred CHHHHHHHHHHHhcCCCchhHHHHhhccccCcHhhhhhheeee
Q 001458 208 SVDEWRSTLERLEIEPPSEILDILQISFDGLQELEKKIFLDIA 250 (1074)
Q Consensus 208 ~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~a 250 (1074)
+.+.++.+++... .....-.+..||.++|..+.-++
T Consensus 271 ~~~~v~~a~~~~~-------~~~~~~~~~~L~~~~k~~L~ai~ 306 (394)
T PRK00411 271 TEEDVRKAYEKSE-------IVHLSEVLRTLPLHEKLLLRAIV 306 (394)
T ss_pred CHHHHHHHHHHHH-------HHHHHHHHhcCCHHHHHHHHHHH
Confidence 5667777776652 22334457889998887765444
No 31
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=2.8e-10 Score=122.33 Aligned_cols=229 Identities=21% Similarity=0.212 Sum_probs=138.8
Q ss_pred cCceecCcCcccccCCCCCcEEeccCCCCCCcCc-hhhhcCCCccEEEccCcCCccC---chhhhcCCCCCEEeccCCCC
Q 001458 504 LEKLNLKSLPTTISGLKCLSTLDVSGDLKFREFP-EIVEHMEHLSELHLEGTAIRGL---PLSIELLSGLVLLNLKNCRS 579 (1074)
Q Consensus 504 L~~L~l~~l~~~l~~l~~L~~L~L~~~~~~~~~~-~~l~~l~~L~~L~L~~~~i~~l---p~~~~~l~~L~~L~L~~~~~ 579 (1074)
.+.+.+..+-+.-+++..|+...|.++....... .....+++++.|+|++|-+... -.....+++|+.|+|+.|+.
T Consensus 105 vE~iGfDki~akQsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl 184 (505)
T KOG3207|consen 105 VEFIGFDKIAAKQSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRL 184 (505)
T ss_pred eEEecHHHHHHHhhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccc
Confidence 3444444555556788899999998775433221 4678999999999999988773 34567899999999999986
Q ss_pred Ccccccc-ccCCCCCCEEEecCCCCCCccchhhcCCCCCCEEEcCCCcccccCcchhccCCCCEeecCCCCCCccccchh
Q 001458 580 LEILPVT-VSNLKCLRSLKLSGCSKLKKFPEIVRSMKDLSELFLDGTSIKEVPSSIELLTKLELLNLSDCKNLVRLPSSI 658 (1074)
Q Consensus 580 ~~~l~~~-l~~l~~L~~L~Ls~~~~~~~~p~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~~l~~~~~~~ 658 (1074)
....... -..+++|+.|.|++|..... ++......+|+|+.|+|..|..........
T Consensus 185 ~~~~~s~~~~~l~~lK~L~l~~CGls~k----------------------~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~ 242 (505)
T KOG3207|consen 185 SNFISSNTTLLLSHLKQLVLNSCGLSWK----------------------DVQWILLTFPSLEVLYLEANEIILIKATST 242 (505)
T ss_pred cCCccccchhhhhhhheEEeccCCCCHH----------------------HHHHHHHhCCcHHHhhhhcccccceecchh
Confidence 5433221 11345555555555543211 223334445556666665554332222233
Q ss_pred cccCCCCEEEccCCcCCCcC-cccccCCCCccEEEcCCCCCCCCCCcccccccccccccccccCCCCCCCCCccEEecCC
Q 001458 659 IALKSLKTLNLSGCFKLENV-PETLGQIESLEELDISGTAVPHSTSWYSYIPINLMRKSVALKLPSLSGLCSLRKLNLTD 737 (1074)
Q Consensus 659 ~~l~~L~~L~L~~c~~l~~~-p~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~ 737 (1074)
..+..|++|+|++|.....- ....+.++.|+.|.++.|.+++..... ...+.....+++|+.|+++.
T Consensus 243 ~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d------------~~s~~kt~~f~kL~~L~i~~ 310 (505)
T KOG3207|consen 243 KILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPD------------VESLDKTHTFPKLEYLNISE 310 (505)
T ss_pred hhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCC------------ccchhhhcccccceeeeccc
Confidence 34556666666666544321 234567777777777777776542100 00011135678899999999
Q ss_pred CCCCCCCCccccCCCCCCCeEecCCCcCc
Q 001458 738 CNLMEGALPSDIGNLCSLKELYLSKNSFV 766 (1074)
Q Consensus 738 ~~~~~~~~p~~l~~l~~L~~L~Ls~n~l~ 766 (1074)
|++.+-..-..+..+++|+.|.+..|.+.
T Consensus 311 N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 311 NNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred Cccccccccchhhccchhhhhhccccccc
Confidence 98865333344556778888888777665
No 32
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.90 E-value=5.8e-08 Score=106.25 Aligned_cols=178 Identities=18% Similarity=0.151 Sum_probs=106.6
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhcccccceEEEeechhhhccCChHHHHHHHHHHHhcccCCccccccchHHHHHhh-
Q 001458 19 VRMIGICGMGGLGKTTIARVVYDLISHEFEASGFLDNVREISSKGGLVSLQRQLLSQLLKLADNSIWNVFDGIDMLGSR- 97 (1074)
Q Consensus 19 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~- 97 (1074)
..++.|+|++|+||||+|+.+++.....=...+++. ....+..++...+...+...... .+.......+.+.
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~-----~~~~~~~~~l~~i~~~lG~~~~~--~~~~~~~~~l~~~l 115 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLV-----NTRVDAEDLLRMVAADFGLETEG--RDKAALLRELEDFL 115 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeee-----CCCCCHHHHHHHHHHHcCCCCCC--CCHHHHHHHHHHHH
Confidence 457899999999999999999987652211122322 12234556677777664322111 1111222233322
Q ss_pred ----hCCCeEEEEEcCCCChH--HHHHHhcCC---CCCCCCCEEEEEeCChhhhhhc----------CCCceecCCCCCh
Q 001458 98 ----LQRKKVLLVIDDVVDVK--QLQSLAGNR---EWFGSGSRIIITSRDEHLLKTH----------GVDEVYKPHGLNY 158 (1074)
Q Consensus 98 ----L~~kr~LlVLDdv~~~~--~l~~l~~~~---~~~~~gs~IiiTTR~~~v~~~~----------~~~~~~~l~~L~~ 158 (1074)
..+++.++|+||++... .++.+.... ........|++|.... +.... .....+++++++.
T Consensus 116 ~~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~~ 194 (269)
T TIGR03015 116 IEQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLDR 194 (269)
T ss_pred HHHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCCH
Confidence 25788999999998754 344443221 1112233556666543 21111 1134678999999
Q ss_pred HHHHHHHHHhhhcCCC--CChhHHHHHHHHHHHhCCCchHHHHHHhhc
Q 001458 159 DEALQLFNMKAFKTYQ--PLQECVQLSARIIRYAGGLPLALEVLGSFL 204 (1074)
Q Consensus 159 ~ea~~Lf~~~a~~~~~--~~~~~~~~~~~i~~~~~GlPLal~~~g~~L 204 (1074)
+|..+++...+..... ...-..+..+.|++.++|.|..|..++..+
T Consensus 195 ~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 195 EETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 9999999876532211 111234678899999999999999888765
No 33
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.83 E-value=7.1e-10 Score=116.30 Aligned_cols=188 Identities=23% Similarity=0.231 Sum_probs=128.1
Q ss_pred cccCCCCCCEEEecCCCCCCccc----hhhcCCCCCCEEEcCCCcccccC--------------cchhccCCCCEeecCC
Q 001458 586 TVSNLKCLRSLKLSGCSKLKKFP----EIVRSMKDLSELFLDGTSIKEVP--------------SSIELLTKLELLNLSD 647 (1074)
Q Consensus 586 ~l~~l~~L~~L~Ls~~~~~~~~p----~~~~~l~~L~~L~L~~~~l~~lp--------------~~~~~l~~L~~L~L~~ 647 (1074)
.+..++.|++|+||+|-.....+ +.+.++..|++|.|.+|.+.... .-+..-++|+++...+
T Consensus 87 aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~r 166 (382)
T KOG1909|consen 87 ALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGR 166 (382)
T ss_pred HHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeec
Confidence 34556677777777766544433 34556777888888888765221 1234457888888888
Q ss_pred CCCCcc----ccchhcccCCCCEEEccCCcCCCc----CcccccCCCCccEEEcCCCCCCCCCCcccccccccccccccc
Q 001458 648 CKNLVR----LPSSIIALKSLKTLNLSGCFKLEN----VPETLGQIESLEELDISGTAVPHSTSWYSYIPINLMRKSVAL 719 (1074)
Q Consensus 648 ~~~l~~----~~~~~~~l~~L~~L~L~~c~~l~~----~p~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~~~~~~~~ 719 (1074)
|+.-.. +-..+...+.|+.+.+..|.+... +...+..+++|+.|||..|-++...+.. .
T Consensus 167 Nrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~-----------L-- 233 (382)
T KOG1909|consen 167 NRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVA-----------L-- 233 (382)
T ss_pred cccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHH-----------H--
Confidence 774322 234566678999999988866432 3456788999999999998776533210 0
Q ss_pred cCCCCCCCCCccEEecCCCCCCCCCCc---ccc-CCCCCCCeEecCCCcCc-----ccCccccccCCCCEeeccCCc
Q 001458 720 KLPSLSGLCSLRKLNLTDCNLMEGALP---SDI-GNLCSLKELYLSKNSFV-----SLPTSITHLSKLLNIELEDCK 787 (1074)
Q Consensus 720 ~l~~l~~l~~L~~L~Ls~~~~~~~~~p---~~l-~~l~~L~~L~Ls~n~l~-----~lp~~i~~l~~L~~L~L~~c~ 787 (1074)
-..++.+++|+.|++++|.+....-- ..+ ...++|+.|.+.+|.++ .+-.++...+.|+.|+|++|+
T Consensus 234 -akaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 234 -AKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred -HHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 01256678999999999998763321 122 34789999999999887 344566778999999999985
No 34
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.83 E-value=2.8e-07 Score=105.72 Aligned_cols=238 Identities=19% Similarity=0.156 Sum_probs=134.8
Q ss_pred hhHHHHHHHhhcC--CCCCeEEEEEEccCCCcHHHHHHHHHHHhccccc------ceEEEeechhhhccCChHHHHHHHH
Q 001458 2 DSRCEKLRFLMDS--GSSDVRMIGICGMGGLGKTTIARVVYDLISHEFE------ASGFLDNVREISSKGGLVSLQRQLL 73 (1074)
Q Consensus 2 ~~~~~~l~~lL~~--~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~------~~~~~~~~~~~s~~~~~~~l~~~ll 73 (1074)
|.++++|...+.. .......+.|+|++|+|||++|+++++.+..... ..+|+. + ....+...+..+++
T Consensus 21 e~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in-~---~~~~~~~~~~~~i~ 96 (365)
T TIGR02928 21 DEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVN-C---QILDTLYQVLVELA 96 (365)
T ss_pred HHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEE-C---CCCCCHHHHHHHHH
Confidence 4567777777753 1223457899999999999999999986643322 233443 2 22334567778888
Q ss_pred HHHhc--ccCC-ccccccchHHHHHhhhC--CCeEEEEEcCCCChH-----HHHHHhcCCCC-CC--CCCEEEEEeCChh
Q 001458 74 SQLLK--LADN-SIWNVFDGIDMLGSRLQ--RKKVLLVIDDVVDVK-----QLQSLAGNREW-FG--SGSRIIITSRDEH 140 (1074)
Q Consensus 74 ~~l~~--~~~~-~~~~~~~~~~~i~~~L~--~kr~LlVLDdv~~~~-----~l~~l~~~~~~-~~--~gs~IiiTTR~~~ 140 (1074)
.++.. .... ...+..+....+.+.+. +++++||||+++... .+..+.....+ .. ....+|.+|++..
T Consensus 97 ~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~n~~~ 176 (365)
T TIGR02928 97 NQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGISNDLK 176 (365)
T ss_pred HHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEECCcc
Confidence 88642 1111 11122333455555553 567999999998872 13333322111 11 2334555555443
Q ss_pred hhhhcC-------CCceecCCCCChHHHHHHHHHhhh---cCCCCChhHHHHHHHHHHHhCCCchH-HHHHHhhc-----
Q 001458 141 LLKTHG-------VDEVYKPHGLNYDEALQLFNMKAF---KTYQPLQECVQLSARIIRYAGGLPLA-LEVLGSFL----- 204 (1074)
Q Consensus 141 v~~~~~-------~~~~~~l~~L~~~ea~~Lf~~~a~---~~~~~~~~~~~~~~~i~~~~~GlPLa-l~~~g~~L----- 204 (1074)
...... ....+.+++.+.++..+++..++- ......++..+.+.+++....|.|-. +.++-...
T Consensus 177 ~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~~a~~ 256 (365)
T TIGR02928 177 FRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAGEIAER 256 (365)
T ss_pred hHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 221110 124678999999999999998763 22222334445556677777888843 33322111
Q ss_pred CC---CCHHHHHHHHHHHhcCCCchhHHHHhhccccCcHhhhhhheeee
Q 001458 205 SG---RSVDEWRSTLERLEIEPPSEILDILQISFDGLQELEKKIFLDIA 250 (1074)
Q Consensus 205 ~~---~~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~a 250 (1074)
.+ .+.+..+.+.+.+. .....-+..+||.++|.++..++
T Consensus 257 ~~~~~it~~~v~~a~~~~~-------~~~~~~~i~~l~~~~~~~l~ai~ 298 (365)
T TIGR02928 257 EGAERVTEDHVEKAQEKIE-------KDRLLELIRGLPTHSKLVLLAIA 298 (365)
T ss_pred cCCCCCCHHHHHHHHHHHH-------HHHHHHHHHcCCHHHHHHHHHHH
Confidence 11 34556666666542 22334456788888887666554
No 35
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.77 E-value=3.2e-08 Score=105.88 Aligned_cols=193 Identities=23% Similarity=0.251 Sum_probs=97.5
Q ss_pred hhHHHHHHHhhcCCCCCeEEEEEEccCCCcHHHHHHHHHHHhcccccceEEEeechhhhccCChHHH------HHHHHHH
Q 001458 2 DSRCEKLRFLMDSGSSDVRMIGICGMGGLGKTTIARVVYDLISHEFEASGFLDNVREISSKGGLVSL------QRQLLSQ 75 (1074)
Q Consensus 2 ~~~~~~l~~lL~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l------~~~ll~~ 75 (1074)
+.++++|.+++..+ ..+.+.|+|+.|+|||+|++.+.+.....-..++|+........ ...... .+.+...
T Consensus 5 ~~el~~l~~~l~~~--~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~-~~~~~~~~~~~~~~~l~~~ 81 (234)
T PF01637_consen 5 EKELEKLKELLESG--PSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNE-SSLRSFIEETSLADELSEA 81 (234)
T ss_dssp HHHHHHHHHCHHH----SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHH-HHHHHHHHHHHHHCHCHHH
T ss_pred HHHHHHHHHHHHhh--cCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhh-hHHHHHHHHHHHHHHHHHH
Confidence 35667777777633 35678999999999999999999977443334455442221110 001111 1111122
Q ss_pred HhcccC---------CccccccchHHHHHhhhC--CCeEEEEEcCCCChH-H----------HHHHhcCCCCCCCCCEEE
Q 001458 76 LLKLAD---------NSIWNVFDGIDMLGSRLQ--RKKVLLVIDDVVDVK-Q----------LQSLAGNREWFGSGSRII 133 (1074)
Q Consensus 76 l~~~~~---------~~~~~~~~~~~~i~~~L~--~kr~LlVLDdv~~~~-~----------l~~l~~~~~~~~~gs~Ii 133 (1074)
+..... ............+.+.+. +++++||+||++... . +..+..... ....-.+|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~v 160 (234)
T PF01637_consen 82 LGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLL-SQQNVSIV 160 (234)
T ss_dssp HHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH-----TTEEEE
T ss_pred HhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhcc-ccCCceEE
Confidence 211110 011222333444444443 345999999997766 1 222222211 12334455
Q ss_pred EEeCChhhhhh--------cCCCceecCCCCChHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCCchHHHH
Q 001458 134 ITSRDEHLLKT--------HGVDEVYKPHGLNYDEALQLFNMKAFKTYQPLQECVQLSARIIRYAGGLPLALEV 199 (1074)
Q Consensus 134 iTTR~~~v~~~--------~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~ 199 (1074)
+++....+... .+....+.+++|+.+++++++...+-.. ..-+...+..++|+..++|+|..|..
T Consensus 161 ~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 161 ITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL-IKLPFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp EEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC-------HHHHHHHHHHHTT-HHHHHH
T ss_pred EECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh-hcccCCHHHHHHHHHHhCCCHHHHhc
Confidence 56555444333 2333459999999999999998865333 11112345568999999999998764
No 36
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.77 E-value=6.4e-10 Score=123.11 Aligned_cols=77 Identities=21% Similarity=0.355 Sum_probs=54.3
Q ss_pred CccEEecCCCCCCCCCCccccCCCCCCCeEecCCCcCcccCccc---cccCCCCEeeccCCcCCCcCCCCCCCcceEeec
Q 001458 729 SLRKLNLTDCNLMEGALPSDIGNLCSLKELYLSKNSFVSLPTSI---THLSKLLNIELEDCKRLQSLPQLPPNIRQVRVN 805 (1074)
Q Consensus 729 ~L~~L~Ls~~~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~i---~~l~~L~~L~L~~c~~L~~lp~lp~sL~~L~i~ 805 (1074)
.|.+||++.|+++ .+|..|..+..|++|-|.+|.+++=|..| +...-.++|++.-|. -..-+.++..++-....
T Consensus 212 pLi~lDfScNkis--~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~q-~~~a~~~~t~~RP~~~~ 288 (722)
T KOG0532|consen 212 PLIRLDFSCNKIS--YLPVDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQACQ-SGGALDLYTTLRPRHFS 288 (722)
T ss_pred ceeeeecccCcee--ecchhhhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhcc-ccCCcccccccCCcccC
Confidence 4778888888886 58889999999999999999999888766 345556888888884 22223344444444444
Q ss_pred Ccc
Q 001458 806 GCA 808 (1074)
Q Consensus 806 ~C~ 808 (1074)
.|.
T Consensus 289 ~c~ 291 (722)
T KOG0532|consen 289 SCH 291 (722)
T ss_pred Ccc
Confidence 453
No 37
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.77 E-value=8.1e-08 Score=107.11 Aligned_cols=257 Identities=16% Similarity=0.124 Sum_probs=135.2
Q ss_pred hHHHHHHHhhcCC---CCCeEEEEEEccCCCcHHHHHHHHHHHhcccccceEEEeechhhhccCChHHHHHHHHHHHhcc
Q 001458 3 SRCEKLRFLMDSG---SSDVRMIGICGMGGLGKTTIARVVYDLISHEFEASGFLDNVREISSKGGLVSLQRQLLSQLLKL 79 (1074)
Q Consensus 3 ~~~~~l~~lL~~~---~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~ll~~l~~~ 79 (1074)
..+++|..++... ....+.+.++|++|+|||+||+.+++.....+. +.. . ........+. ..+..+. .
T Consensus 11 ~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~---~~~-~---~~~~~~~~l~-~~l~~~~-~ 81 (305)
T TIGR00635 11 KVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGVNLK---ITS-G---PALEKPGDLA-AILTNLE-E 81 (305)
T ss_pred HHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEE---Eec-c---chhcCchhHH-HHHHhcc-c
Confidence 3455666666531 223556889999999999999999997754331 111 0 0001111111 1122210 0
Q ss_pred cCC----cccc-ccchHHHHHhhhCCCeEEEEEcCCCChHHHHHHhcCCCCCCCCCEEEEEeCChhhhhhc--CCCceec
Q 001458 80 ADN----SIWN-VFDGIDMLGSRLQRKKVLLVIDDVVDVKQLQSLAGNREWFGSGSRIIITSRDEHLLKTH--GVDEVYK 152 (1074)
Q Consensus 80 ~~~----~~~~-~~~~~~~i~~~L~~kr~LlVLDdv~~~~~l~~l~~~~~~~~~gs~IiiTTR~~~v~~~~--~~~~~~~ 152 (1074)
... +... ..+..+.+...+.+.+..+|+|+..+..++... ..+.+-|..|||...+.... .....++
T Consensus 82 ~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~------~~~~~li~~t~~~~~l~~~l~sR~~~~~~ 155 (305)
T TIGR00635 82 GDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLD------LPPFTLVGATTRAGMLTSPLRDRFGIILR 155 (305)
T ss_pred CCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeec------CCCeEEEEecCCccccCHHHHhhcceEEE
Confidence 000 0000 001122233344444445555554443333221 12345566677765443321 1234679
Q ss_pred CCCCChHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCCchHHHHHHhhcC------C---CCHHHHHHHHHHHhcCC
Q 001458 153 PHGLNYDEALQLFNMKAFKTYQPLQECVQLSARIIRYAGGLPLALEVLGSFLS------G---RSVDEWRSTLERLEIEP 223 (1074)
Q Consensus 153 l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~g~~L~------~---~~~~~w~~~l~~l~~~~ 223 (1074)
+++++.++..+++.+.+...... -..+....|++.|+|.|-.+..++..+. + .+.+..+.
T Consensus 156 l~~l~~~e~~~il~~~~~~~~~~--~~~~al~~ia~~~~G~pR~~~~ll~~~~~~a~~~~~~~it~~~v~~--------- 224 (305)
T TIGR00635 156 LEFYTVEELAEIVSRSAGLLNVE--IEPEAALEIARRSRGTPRIANRLLRRVRDFAQVRGQKIINRDIALK--------- 224 (305)
T ss_pred eCCCCHHHHHHHHHHHHHHhCCC--cCHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHcCCCCcCHHHHHH---------
Confidence 99999999999999887533221 1235677899999999966544443211 0 11112222
Q ss_pred CchhHHHHhhccccCcHhhhhhhe-eeecccCC-CCHHHHHHHhhhCCCCcccchh-hhhcccceEEe
Q 001458 224 PSEILDILQISFDGLQELEKKIFL-DIACFFKG-NDRDYVTNFLEGCGFHPVIGIR-VLIEKCLITVH 288 (1074)
Q Consensus 224 ~~~i~~~l~~sy~~L~~~~k~~fl-~~a~f~~~-~~~~~l~~~~~~~g~~~~~~i~-~L~~~sLi~~~ 288 (1074)
....+...|.+++..++..+. .++.+..+ ...+.+...+..........++ .|++++||...
T Consensus 225 ---~l~~l~~~~~~l~~~~~~~L~al~~~~~~~~~~~~~ia~~lg~~~~~~~~~~e~~Li~~~li~~~ 289 (305)
T TIGR00635 225 ---ALEMLMIDELGLDEIDRKLLSVLIEQFQGGPVGLKTLAAALGEDADTIEDVYEPYLLQIGFLQRT 289 (305)
T ss_pred ---HHHHhCCCCCCCCHHHHHHHHHHHHHhCCCcccHHHHHHHhCCCcchHHHhhhHHHHHcCCcccC
Confidence 222356678899988877665 33545432 3445555555444333344466 69999999644
No 38
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.74 E-value=2.5e-09 Score=109.10 Aligned_cols=224 Identities=20% Similarity=0.215 Sum_probs=133.6
Q ss_pred CchhhhcCCCccEEEccCcCCc---------cCchhhhcCCCCCEEeccCCCCCccccccccCCCCCCEEEecCCCCCCc
Q 001458 536 FPEIVEHMEHLSELHLEGTAIR---------GLPLSIELLSGLVLLNLKNCRSLEILPVTVSNLKCLRSLKLSGCSKLKK 606 (1074)
Q Consensus 536 ~~~~l~~l~~L~~L~L~~~~i~---------~lp~~~~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~Ls~~~~~~~ 606 (1074)
+...+..+.+|.+|.++++.-. .+|..+.-+.+|+.+.++.|.-..... ....-|.|+++.+...... .
T Consensus 174 ~~hildf~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~~i~~-~~~~kptl~t~~v~~s~~~-~ 251 (490)
T KOG1259|consen 174 FSHVLDFCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTENIVD-IELLKPTLQTICVHNTTIQ-D 251 (490)
T ss_pred hHHHHHhhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccchhheec-eeecCchhheeeeeccccc-c
Confidence 4455667788999988775321 144444555666666666554222111 1112244455544432111 0
Q ss_pred cchhhcCCCCCCEEEcCCCccc--ccCcchhccCCCCEeecCCCCCCccccchhcccCCCCEEEccCCcCCCcCcccccC
Q 001458 607 FPEIVRSMKDLSELFLDGTSIK--EVPSSIELLTKLELLNLSDCKNLVRLPSSIIALKSLKTLNLSGCFKLENVPETLGQ 684 (1074)
Q Consensus 607 ~p~~~~~l~~L~~L~L~~~~l~--~lp~~~~~l~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~L~~c~~l~~~p~~l~~ 684 (1074)
.| .+-.+..+..+..+.-... .+-..+...+.|+.|+|++|.+ ..+..++.-.|.++.|+++.|.....- .+..
T Consensus 252 ~~-~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I-~~iDESvKL~Pkir~L~lS~N~i~~v~--nLa~ 327 (490)
T KOG1259|consen 252 VP-SLLPETILADPSGSEPSTSNGSALVSADTWQELTELDLSGNLI-TQIDESVKLAPKLRRLILSQNRIRTVQ--NLAE 327 (490)
T ss_pred cc-cccchhhhcCccCCCCCccCCceEEecchHhhhhhccccccch-hhhhhhhhhccceeEEeccccceeeeh--hhhh
Confidence 00 0000111111111100000 0111234457888999998874 445566777888999999998765433 2778
Q ss_pred CCCccEEEcCCCCCCCCCCcccccccccccccccccCCCCCCCCCccEEecCCCCCCCCCCccccCCCCCCCeEecCCCc
Q 001458 685 IESLEELDISGTAVPHSTSWYSYIPINLMRKSVALKLPSLSGLCSLRKLNLTDCNLMEGALPSDIGNLCSLKELYLSKNS 764 (1074)
Q Consensus 685 l~~L~~L~L~~n~i~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~~~~~~~p~~l~~l~~L~~L~Ls~n~ 764 (1074)
+++|+.||+++|.++...+|. ..+-+.+.|.|++|.+- --+.++.+-+|..|++++|+
T Consensus 328 L~~L~~LDLS~N~Ls~~~Gwh-------------------~KLGNIKtL~La~N~iE---~LSGL~KLYSLvnLDl~~N~ 385 (490)
T KOG1259|consen 328 LPQLQLLDLSGNLLAECVGWH-------------------LKLGNIKTLKLAQNKIE---TLSGLRKLYSLVNLDLSSNQ 385 (490)
T ss_pred cccceEeecccchhHhhhhhH-------------------hhhcCEeeeehhhhhHh---hhhhhHhhhhheeccccccc
Confidence 889999999998887655442 24557888889888773 33467778889999999998
Q ss_pred CcccC--ccccccCCCCEeeccCCc
Q 001458 765 FVSLP--TSITHLSKLLNIELEDCK 787 (1074)
Q Consensus 765 l~~lp--~~i~~l~~L~~L~L~~c~ 787 (1074)
+..+. .+|++||.|+.|.|.+||
T Consensus 386 Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 386 IEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred hhhHHHhcccccccHHHHHhhcCCC
Confidence 88663 478899999999998886
No 39
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.72 E-value=1.3e-08 Score=118.20 Aligned_cols=119 Identities=19% Similarity=0.208 Sum_probs=78.6
Q ss_pred eEEecCccCCCCccccC--cCceEEEecCCCCCCCCCCCCCC--CceEEEcCcCCcccccccccCCCCCcEEEccCCCCC
Q 001458 370 LLKICNLQLPNGLEYLS--NRLRLLGWRGYPLKFLPSNLQMD--KTIEIYMCYSRIGELWKGIKHLDKLKVMILSHSENL 445 (1074)
Q Consensus 370 ~L~l~~~~l~~~~~~l~--~~L~~L~l~~~~l~~lp~~~~~~--~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~~~~~ 445 (1074)
.|....+.+........ ..++.|++.++++..+|...... +|.+|++++|++.++|..+..+++|+.|++++|++.
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~ 176 (394)
T COG4886 97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLS 176 (394)
T ss_pred eeeccccccccCchhhhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhh
Confidence 45666665533322222 35778888888888888777543 788888888888888777788888888888888755
Q ss_pred CCCCCCCCCCCCcEEEecCcccccccCcchhcCCCccEEeccCC
Q 001458 446 IRMPDFTGAPNLEKLILEGCTRLYEIHPSLLLHNKLIILNMKDC 489 (1074)
Q Consensus 446 ~~~~~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~~ 489 (1074)
...+.....++|+.|++++|. ...+|..+..+..|+.|.++++
T Consensus 177 ~l~~~~~~~~~L~~L~ls~N~-i~~l~~~~~~~~~L~~l~~~~N 219 (394)
T COG4886 177 DLPKLLSNLSNLNNLDLSGNK-ISDLPPEIELLSALEELDLSNN 219 (394)
T ss_pred hhhhhhhhhhhhhheeccCCc-cccCchhhhhhhhhhhhhhcCC
Confidence 444444477777777777754 4445555555555666666654
No 40
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.71 E-value=6.2e-10 Score=123.21 Aligned_cols=177 Identities=31% Similarity=0.452 Sum_probs=137.0
Q ss_pred CccchhhcCCCCCCEEEcCCCcccccCcchhccCCCCEeecCCCCCCccccchhcccCCCCEEEccCCcCCCcCcccccC
Q 001458 605 KKFPEIVRSMKDLSELFLDGTSIKEVPSSIELLTKLELLNLSDCKNLVRLPSSIIALKSLKTLNLSGCFKLENVPETLGQ 684 (1074)
Q Consensus 605 ~~~p~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~L~~c~~l~~~p~~l~~ 684 (1074)
..+|..+..+..|+.+.+..|.+..+|..+..+..|.+|+|+.|. +..+|..++.|| |+.|-+++| +++.+|+.++.
T Consensus 88 ~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~Nq-lS~lp~~lC~lp-Lkvli~sNN-kl~~lp~~ig~ 164 (722)
T KOG0532|consen 88 SELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQ-LSHLPDGLCDLP-LKVLIVSNN-KLTSLPEEIGL 164 (722)
T ss_pred ccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccch-hhcCChhhhcCc-ceeEEEecC-ccccCCccccc
Confidence 445666666667777777777788888888888888888887776 345566666555 777777776 67778888888
Q ss_pred CCCccEEEcCCCCCCCCCCcccccccccccccccccCCCCCCCCCccEEecCCCCCCCCCCccccCCCCCCCeEecCCCc
Q 001458 685 IESLEELDISGTAVPHSTSWYSYIPINLMRKSVALKLPSLSGLCSLRKLNLTDCNLMEGALPSDIGNLCSLKELYLSKNS 764 (1074)
Q Consensus 685 l~~L~~L~L~~n~i~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~~~~~~~p~~l~~l~~L~~L~Ls~n~ 764 (1074)
+..|..|+.+.|.+... .+.++++.+|+.|++..|++. .+|..+.. -.|..||+++|+
T Consensus 165 ~~tl~~ld~s~nei~sl-------------------psql~~l~slr~l~vrRn~l~--~lp~El~~-LpLi~lDfScNk 222 (722)
T KOG0532|consen 165 LPTLAHLDVSKNEIQSL-------------------PSQLGYLTSLRDLNVRRNHLE--DLPEELCS-LPLIRLDFSCNK 222 (722)
T ss_pred chhHHHhhhhhhhhhhc-------------------hHHhhhHHHHHHHHHhhhhhh--hCCHHHhC-CceeeeecccCc
Confidence 88899999988887652 233788999999999999996 48888874 468999999999
Q ss_pred CcccCccccccCCCCEeeccCCcCCCcCCC------CCCCcceEeecCc
Q 001458 765 FVSLPTSITHLSKLLNIELEDCKRLQSLPQ------LPPNIRQVRVNGC 807 (1074)
Q Consensus 765 l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~------lp~sL~~L~i~~C 807 (1074)
+..||.++.++..|++|-|.+|+ |++=|. .-.=.|+|++.-|
T Consensus 223 is~iPv~fr~m~~Lq~l~LenNP-LqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 223 ISYLPVDFRKMRHLQVLQLENNP-LQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred eeecchhhhhhhhheeeeeccCC-CCCChHHHHhccceeeeeeecchhc
Confidence 99999999999999999998886 565552 1233577888877
No 41
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.70 E-value=3.4e-08 Score=110.84 Aligned_cols=264 Identities=17% Similarity=0.112 Sum_probs=132.5
Q ss_pred hHHHHHHHhhcC---CCCCeEEEEEEccCCCcHHHHHHHHHHHhcccccceEEEeechhhhccCChHHHHHHHHHHHhcc
Q 001458 3 SRCEKLRFLMDS---GSSDVRMIGICGMGGLGKTTIARVVYDLISHEFEASGFLDNVREISSKGGLVSLQRQLLSQLLKL 79 (1074)
Q Consensus 3 ~~~~~l~~lL~~---~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~ll~~l~~~ 79 (1074)
..++.+..++.. .....+.+.|+|++|+||||+|+.+++.....+. +.. ..... . ......++..+. .
T Consensus 32 ~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~---~~~-~~~~~---~-~~~l~~~l~~l~-~ 102 (328)
T PRK00080 32 KVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVNIR---ITS-GPALE---K-PGDLAAILTNLE-E 102 (328)
T ss_pred HHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCCeE---EEe-ccccc---C-hHHHHHHHHhcc-c
Confidence 345556555543 1223567889999999999999999998764332 111 00000 0 111112222210 0
Q ss_pred cCC----ccccc-cchHHHHHhhhCCCeEEEEEcCCCChHHHHHHhcCCCCCCCCCEEEEEeCChhhhhhc--CCCceec
Q 001458 80 ADN----SIWNV-FDGIDMLGSRLQRKKVLLVIDDVVDVKQLQSLAGNREWFGSGSRIIITSRDEHLLKTH--GVDEVYK 152 (1074)
Q Consensus 80 ~~~----~~~~~-~~~~~~i~~~L~~kr~LlVLDdv~~~~~l~~l~~~~~~~~~gs~IiiTTR~~~v~~~~--~~~~~~~ 152 (1074)
... +.... ....+.+...+.+.+..+|+|+..+..++... ..+.+-|..|||...+.... .....++
T Consensus 103 ~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~------l~~~~li~at~~~~~l~~~L~sRf~~~~~ 176 (328)
T PRK00080 103 GDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLD------LPPFTLIGATTRAGLLTSPLRDRFGIVQR 176 (328)
T ss_pred CCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeec------CCCceEEeecCCcccCCHHHHHhcCeeee
Confidence 000 00000 00111122222233333333333222211110 12334555677755443321 1134689
Q ss_pred CCCCChHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCCchHHHHHHhhcCCCCHHHHHHHHH--HHhcCCCchhHHH
Q 001458 153 PHGLNYDEALQLFNMKAFKTYQPLQECVQLSARIIRYAGGLPLALEVLGSFLSGRSVDEWRSTLE--RLEIEPPSEILDI 230 (1074)
Q Consensus 153 l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~g~~L~~~~~~~w~~~l~--~l~~~~~~~i~~~ 230 (1074)
++.++.++..+++.+.+...... -..+.+..|++.|+|.|-.+..+...+ ..|...-. .+...........
T Consensus 177 l~~~~~~e~~~il~~~~~~~~~~--~~~~~~~~ia~~~~G~pR~a~~~l~~~-----~~~a~~~~~~~I~~~~v~~~l~~ 249 (328)
T PRK00080 177 LEFYTVEELEKIVKRSARILGVE--IDEEGALEIARRSRGTPRIANRLLRRV-----RDFAQVKGDGVITKEIADKALDM 249 (328)
T ss_pred cCCCCHHHHHHHHHHHHHHcCCC--cCHHHHHHHHHHcCCCchHHHHHHHHH-----HHHHHHcCCCCCCHHHHHHHHHH
Confidence 99999999999999887543222 223568899999999996444443321 11211100 0000001223345
Q ss_pred HhhccccCcHhhhhhhe-eeecccCC-CCHHHHHHHhhhCCCCcccchh-hhhcccceEEe
Q 001458 231 LQISFDGLQELEKKIFL-DIACFFKG-NDRDYVTNFLEGCGFHPVIGIR-VLIEKCLITVH 288 (1074)
Q Consensus 231 l~~sy~~L~~~~k~~fl-~~a~f~~~-~~~~~l~~~~~~~g~~~~~~i~-~L~~~sLi~~~ 288 (1074)
+...+.+|++..+..+. .+..|..+ ...+.+...+.......+..++ .|++.+||+..
T Consensus 250 ~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~a~~lg~~~~~~~~~~e~~Li~~~li~~~ 310 (328)
T PRK00080 250 LGVDELGLDEMDRKYLRTIIEKFGGGPVGLDTLAAALGEERDTIEDVYEPYLIQQGFIQRT 310 (328)
T ss_pred hCCCcCCCCHHHHHHHHHHHHHcCCCceeHHHHHHHHCCCcchHHHHhhHHHHHcCCcccC
Confidence 67778899988888775 44555544 3556665555444333344555 78888888654
No 42
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.66 E-value=8.3e-07 Score=104.27 Aligned_cols=283 Identities=20% Similarity=0.209 Sum_probs=172.6
Q ss_pred HHHHhhcCCCCCeEEEEEEccCCCcHHHHHHHHHHHhcccccceEEEeechhhh-ccCChHHHHHHHHHHHhcccCCc--
Q 001458 7 KLRFLMDSGSSDVRMIGICGMGGLGKTTIARVVYDLISHEFEASGFLDNVREIS-SKGGLVSLQRQLLSQLLKLADNS-- 83 (1074)
Q Consensus 7 ~l~~lL~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s-~~~~~~~l~~~ll~~l~~~~~~~-- 83 (1074)
+|...|.. ..+.|.+.|..++|.|||||+-+...+ ...-..+.|+. .. ...+.......++..+.......
T Consensus 26 rL~~~L~~-~~~~RL~li~APAGfGKttl~aq~~~~-~~~~~~v~Wls----lde~dndp~rF~~yLi~al~~~~p~~~~ 99 (894)
T COG2909 26 RLLDRLRR-ANDYRLILISAPAGFGKTTLLAQWREL-AADGAAVAWLS----LDESDNDPARFLSYLIAALQQATPTLGD 99 (894)
T ss_pred HHHHHHhc-CCCceEEEEeCCCCCcHHHHHHHHHHh-cCcccceeEee----cCCccCCHHHHHHHHHHHHHHhCccccH
Confidence 44555553 356899999999999999999999873 34445678886 33 23466677777777764322111
Q ss_pred ----------cccccchHHHHHhhhC--CCeEEEEEcCCCChH------HHHHHhcCCCCCCCCCEEEEEeCChh---hh
Q 001458 84 ----------IWNVFDGIDMLGSRLQ--RKKVLLVIDDVVDVK------QLQSLAGNREWFGSGSRIIITSRDEH---LL 142 (1074)
Q Consensus 84 ----------~~~~~~~~~~i~~~L~--~kr~LlVLDdv~~~~------~l~~l~~~~~~~~~gs~IiiTTR~~~---v~ 142 (1074)
..+.......+...+. .++..+||||..-.. .++.+.... .++-.+|||||.+- ++
T Consensus 100 ~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~---P~~l~lvv~SR~rP~l~la 176 (894)
T COG2909 100 EAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHA---PENLTLVVTSRSRPQLGLA 176 (894)
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhC---CCCeEEEEEeccCCCCccc
Confidence 1122223344444443 368999999975433 355555443 47889999999863 22
Q ss_pred hhcCCCceecCC----CCChHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCCchHHHHHHhhcCC-CCHHHHHHHHH
Q 001458 143 KTHGVDEVYKPH----GLNYDEALQLFNMKAFKTYQPLQECVQLSARIIRYAGGLPLALEVLGSFLSG-RSVDEWRSTLE 217 (1074)
Q Consensus 143 ~~~~~~~~~~l~----~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~g~~L~~-~~~~~w~~~l~ 217 (1074)
..--.+...++. .|+.+|+-++|...... +-...-++.+.++.+|.+-|+..++=.+++ .+.+.--..+.
T Consensus 177 ~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l-----~Ld~~~~~~L~~~teGW~~al~L~aLa~~~~~~~~q~~~~Ls 251 (894)
T COG2909 177 RLRLRDELLEIGSEELRFDTEEAAAFLNDRGSL-----PLDAADLKALYDRTEGWAAALQLIALALRNNTSAEQSLRGLS 251 (894)
T ss_pred ceeehhhHHhcChHhhcCChHHHHHHHHHcCCC-----CCChHHHHHHHhhcccHHHHHHHHHHHccCCCcHHHHhhhcc
Confidence 111112233443 58999999999876511 112234678999999999999999887773 33322221111
Q ss_pred HHhcCCCchhHH-HHhhccccCcHhhhhhheeeecccCCCCHHHHHHHhhhCCCCcccchhhhhcccceEEe----CCeE
Q 001458 218 RLEIEPPSEILD-ILQISFDGLQELEKKIFLDIACFFKGNDRDYVTNFLEGCGFHPVIGIRVLIEKCLITVH----NNTL 292 (1074)
Q Consensus 218 ~l~~~~~~~i~~-~l~~sy~~L~~~~k~~fl~~a~f~~~~~~~~l~~~~~~~g~~~~~~i~~L~~~sLi~~~----~~~~ 292 (1074)
-. .+.|.+ ...-=+|.||++.|..++-+|++..- . +.+...+.+.+ ....-++.|.+++|+-.. +++|
T Consensus 252 G~----~~~l~dYL~eeVld~Lp~~l~~FLl~~svl~~f-~-~eL~~~Ltg~~-ng~amLe~L~~~gLFl~~Ldd~~~Wf 324 (894)
T COG2909 252 GA----ASHLSDYLVEEVLDRLPPELRDFLLQTSVLSRF-N-DELCNALTGEE-NGQAMLEELERRGLFLQRLDDEGQWF 324 (894)
T ss_pred ch----HHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHHh-h-HHHHHHHhcCC-cHHHHHHHHHhCCCceeeecCCCcee
Confidence 00 111111 11222588999999998888887421 1 12222222111 112236788888876543 6799
Q ss_pred ehHHHHHHHHHHHhhccC
Q 001458 293 WMHDLLQELGQQIVQRQS 310 (1074)
Q Consensus 293 ~mHdli~~~~~~i~~~~~ 310 (1074)
..|.++.|+-+.-.+.+.
T Consensus 325 ryH~LFaeFL~~r~~~~~ 342 (894)
T COG2909 325 RYHHLFAEFLRQRLQREL 342 (894)
T ss_pred ehhHHHHHHHHhhhcccc
Confidence 999999999988777653
No 43
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.65 E-value=3.9e-08 Score=114.17 Aligned_cols=196 Identities=27% Similarity=0.277 Sum_probs=118.5
Q ss_pred EEEecCCCC-CCCCCCCCCCCceEEEcCcCCcccccccccCCC-CCcEEEccCCCCCCCCCCCCCCCCCcEEEecCcccc
Q 001458 391 LLGWRGYPL-KFLPSNLQMDKTIEIYMCYSRIGELWKGIKHLD-KLKVMILSHSENLIRMPDFTGAPNLEKLILEGCTRL 468 (1074)
Q Consensus 391 ~L~l~~~~l-~~lp~~~~~~~L~~L~L~~~~i~~l~~~~~~l~-~L~~L~Ls~~~~~~~~~~~~~l~~L~~L~L~~~~~l 468 (1074)
.+....+.+ ..+........+..|++.++.+.+++.....+. +|+.|++++|++......+..+++|+.|+++.|. +
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~-l 175 (394)
T COG4886 97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFND-L 175 (394)
T ss_pred eeeccccccccCchhhhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCch-h
Confidence 466677766 334434466788888888888888888777775 8888888888755544567778888888888765 4
Q ss_pred cccCcchhcCCCccEEeccCCCCCCcCCccccccccCceecCcCcccccCCCCCcEEeccCCCCCCcCchhhhcCCCccE
Q 001458 469 YEIHPSLLLHNKLIILNMKDCTSLITLPGKILMKSLEKLNLKSLPTTISGLKCLSTLDVSGDLKFREFPEIVEHMEHLSE 548 (1074)
Q Consensus 469 ~~~~~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~ 548 (1074)
..++...+.++.|+.|+++++ .+..+|.. +..+..|++|.+++|. ....+..+.++.++..
T Consensus 176 ~~l~~~~~~~~~L~~L~ls~N-~i~~l~~~-----------------~~~~~~L~~l~~~~N~-~~~~~~~~~~~~~l~~ 236 (394)
T COG4886 176 SDLPKLLSNLSNLNNLDLSGN-KISDLPPE-----------------IELLSALEELDLSNNS-IIELLSSLSNLKNLSG 236 (394)
T ss_pred hhhhhhhhhhhhhhheeccCC-ccccCchh-----------------hhhhhhhhhhhhcCCc-ceecchhhhhcccccc
Confidence 455555556677777777764 23333332 2223334444445553 2233344555566666
Q ss_pred EEccCcCCccCchhhhcCCCCCEEeccCCCCCccccccccCCCCCCEEEecCCCCCCccc
Q 001458 549 LHLEGTAIRGLPLSIELLSGLVLLNLKNCRSLEILPVTVSNLKCLRSLKLSGCSKLKKFP 608 (1074)
Q Consensus 549 L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~Ls~~~~~~~~p 608 (1074)
|.+.+|.+..++..++.+++++.|++++|......+ ++.+.+|+.|+++++......+
T Consensus 237 l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 237 LELSNNKLEDLPESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred cccCCceeeeccchhccccccceecccccccccccc--ccccCccCEEeccCccccccch
Confidence 666666666655555666666666666655444333 5555555555555554444433
No 44
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.64 E-value=3.6e-07 Score=98.55 Aligned_cols=151 Identities=19% Similarity=0.280 Sum_probs=96.9
Q ss_pred CCCeEEEEEEccCCCcHHHHHHHHHHHhcccccceEEEeechhhhccCChHHHHHHHHHHHhcccCCccccccchHHHHH
Q 001458 16 SSDVRMIGICGMGGLGKTTIARVVYDLISHEFEASGFLDNVREISSKGGLVSLQRQLLSQLLKLADNSIWNVFDGIDMLG 95 (1074)
Q Consensus 16 ~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~ 95 (1074)
.+.+.-..+||++|+||||||+.++......|...- ....++.++.+.+ +. .-+
T Consensus 45 ~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~s--------Av~~gvkdlr~i~-e~-----------------a~~ 98 (436)
T COG2256 45 AGHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALS--------AVTSGVKDLREII-EE-----------------ARK 98 (436)
T ss_pred cCCCceeEEECCCCCCHHHHHHHHHHhhCCceEEec--------cccccHHHHHHHH-HH-----------------HHH
Confidence 345666789999999999999999998777765321 1123444433322 22 112
Q ss_pred hhhCCCeEEEEEcCCCC--hHHHHHHhcCCCCCCCCCEEEEE--eCChhh---hhhcCCCceecCCCCChHHHHHHHHHh
Q 001458 96 SRLQRKKVLLVIDDVVD--VKQLQSLAGNREWFGSGSRIIIT--SRDEHL---LKTHGVDEVYKPHGLNYDEALQLFNMK 168 (1074)
Q Consensus 96 ~~L~~kr~LlVLDdv~~--~~~l~~l~~~~~~~~~gs~IiiT--TR~~~v---~~~~~~~~~~~l~~L~~~ea~~Lf~~~ 168 (1074)
.+..++|++|++|.|.. ..|-+.+++.. -.|.-|+|- |-+... ........++++++|+.+|-.+++.+.
T Consensus 99 ~~~~gr~tiLflDEIHRfnK~QQD~lLp~v---E~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~~di~~~l~ra 175 (436)
T COG2256 99 NRLLGRRTILFLDEIHRFNKAQQDALLPHV---ENGTIILIGATTENPSFELNPALLSRARVFELKPLSSEDIKKLLKRA 175 (436)
T ss_pred HHhcCCceEEEEehhhhcChhhhhhhhhhh---cCCeEEEEeccCCCCCeeecHHHhhhhheeeeecCCHHHHHHHHHHH
Confidence 34458999999999964 45777777765 478877774 444321 112234568999999999999999884
Q ss_pred hhcCCCCCh-----hHHHHHHHHHHHhCCCch
Q 001458 169 AFKTYQPLQ-----ECVQLSARIIRYAGGLPL 195 (1074)
Q Consensus 169 a~~~~~~~~-----~~~~~~~~i~~~~~GlPL 195 (1074)
+-.....-. -.++....+++.++|---
T Consensus 176 ~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R 207 (436)
T COG2256 176 LLDEERGLGGQIIVLDEEALDYLVRLSNGDAR 207 (436)
T ss_pred HhhhhcCCCcccccCCHHHHHHHHHhcCchHH
Confidence 422211111 123456678888888653
No 45
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.61 E-value=2.9e-08 Score=107.73 Aligned_cols=279 Identities=21% Similarity=0.252 Sum_probs=182.5
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHHHhcccccceEEEeechhhhccCChHHHHHHHHHHHhcccCCccccccchHHHHHhh
Q 001458 18 DVRMIGICGMGGLGKTTIARVVYDLISHEFEASGFLDNVREISSKGGLVSLQRQLLSQLLKLADNSIWNVFDGIDMLGSR 97 (1074)
Q Consensus 18 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~ 97 (1074)
..|.|.++|.|||||||+|-.+.. +...|....++.+.+.++...-+. -.+...+. -...+-+.....+..+
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~-~~~~~~~~v~~vdl~pitD~~~v~---~~~ag~~g----l~~~~g~~~~~~~~~~ 84 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH-AASEYADGVAFVDLAPITDPALVF---PTLAGALG----LHVQPGDSAVDTLVRR 84 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh-HhhhcccceeeeeccccCchhHhH---HHHHhhcc----cccccchHHHHHHHHH
Confidence 468899999999999999999999 889999888887776665432221 11111111 1111112234566777
Q ss_pred hCCCeEEEEEcCCCChHH-HHHHhcCCCCCCCCCEEEEEeCChhhhhhcCCCceecCCCCChH-HHHHHHHHhhhcCC--
Q 001458 98 LQRKKVLLVIDDVVDVKQ-LQSLAGNREWFGSGSRIIITSRDEHLLKTHGVDEVYKPHGLNYD-EALQLFNMKAFKTY-- 173 (1074)
Q Consensus 98 L~~kr~LlVLDdv~~~~~-l~~l~~~~~~~~~gs~IiiTTR~~~v~~~~~~~~~~~l~~L~~~-ea~~Lf~~~a~~~~-- 173 (1074)
..++|.++|+||-.+..+ -..+...+....+.-+|+.|+|+.- .+..+..+.++.|+.. ++.++|...+....
T Consensus 85 ~~~rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~---l~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~ 161 (414)
T COG3903 85 IGDRRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAI---LVAGEVHRRVPSLSLFDEAIELFVCRAVLVALS 161 (414)
T ss_pred HhhhhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhh---cccccccccCCccccCCchhHHHHHHHHHhccc
Confidence 888999999999877643 2333333333346667888988743 2334567788888765 79999987663211
Q ss_pred -CCChhHHHHHHHHHHHhCCCchHHHHHHhhcCCCCHHHHHHHHH----HHhcC------CCchhHHHHhhccccCcHhh
Q 001458 174 -QPLQECVQLSARIIRYAGGLPLALEVLGSFLSGRSVDEWRSTLE----RLEIE------PPSEILDILQISFDGLQELE 242 (1074)
Q Consensus 174 -~~~~~~~~~~~~i~~~~~GlPLal~~~g~~L~~~~~~~w~~~l~----~l~~~------~~~~i~~~l~~sy~~L~~~~ 242 (1074)
.-.........+|.+..+|.|++|...++..+....++--+.+. .+... ........+.+||.-|...+
T Consensus 162 f~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtgwe 241 (414)
T COG3903 162 FWLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTGWE 241 (414)
T ss_pred eeecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhhHH
Confidence 11223345678899999999999999999988766554433332 22221 22456778999999999999
Q ss_pred hhhheeeecccCCCCHHHHHHHhhhCCCC---c----ccchhhhhcccceEEe----CCeEehHHHHHHHHHHHhhcc
Q 001458 243 KKIFLDIACFFKGNDRDYVTNFLEGCGFH---P----VIGIRVLIEKCLITVH----NNTLWMHDLLQELGQQIVQRQ 309 (1074)
Q Consensus 243 k~~fl~~a~f~~~~~~~~l~~~~~~~g~~---~----~~~i~~L~~~sLi~~~----~~~~~mHdli~~~~~~i~~~~ 309 (1074)
+-.|-.++.|..+++.+-. .+.+.|-. + -..+..+++++++... .-.++.-+-.+.|+.+...+.
T Consensus 242 ~~~~~rLa~~~g~f~~~l~--~~~a~g~~~~~~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~YalaeL~r~ 317 (414)
T COG3903 242 RALFGRLAVFVGGFDLGLA--LAVAAGADVDVPRYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRRYALAELHRS 317 (414)
T ss_pred HHHhcchhhhhhhhcccHH--HHHhcCCccccchHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999888876522 22222221 2 2235567888887654 224566666666766665443
No 46
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.60 E-value=4.1e-08 Score=97.33 Aligned_cols=105 Identities=25% Similarity=0.349 Sum_probs=23.9
Q ss_pred CCCccEEEccCcCCccCchhhh-cCCCCCEEeccCCCCCccccccccCCCCCCEEEecCCCCCCccchhhcCCCCCCEEE
Q 001458 543 MEHLSELHLEGTAIRGLPLSIE-LLSGLVLLNLKNCRSLEILPVTVSNLKCLRSLKLSGCSKLKKFPEIVRSMKDLSELF 621 (1074)
Q Consensus 543 l~~L~~L~L~~~~i~~lp~~~~-~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~Ls~~~~~~~~p~~~~~l~~L~~L~ 621 (1074)
...+++|+|+++.|+.+.. ++ .+.+|+.|++++|.....- .+..++.|++|++++|......+.....+++|++|+
T Consensus 18 ~~~~~~L~L~~n~I~~Ie~-L~~~l~~L~~L~Ls~N~I~~l~--~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 18 PVKLRELNLRGNQISTIEN-LGATLDKLEVLDLSNNQITKLE--GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELY 94 (175)
T ss_dssp ------------------S---TT-TT--EEE-TTS--S--T--T----TT--EEE--SS---S-CHHHHHH-TT--EEE
T ss_pred ccccccccccccccccccc-hhhhhcCCCEEECCCCCCcccc--CccChhhhhhcccCCCCCCccccchHHhCCcCCEEE
Confidence 3356667777776666542 33 3555666666665544321 244455555555555544332221112355555555
Q ss_pred cCCCcccccCc--chhccCCCCEeecCCCCC
Q 001458 622 LDGTSIKEVPS--SIELLTKLELLNLSDCKN 650 (1074)
Q Consensus 622 L~~~~l~~lp~--~~~~l~~L~~L~L~~~~~ 650 (1074)
+++|.|..+.. .+..+++|+.|+|.+|+.
T Consensus 95 L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv 125 (175)
T PF14580_consen 95 LSNNKISDLNELEPLSSLPKLRVLSLEGNPV 125 (175)
T ss_dssp -TTS---SCCCCGGGGG-TT--EEE-TT-GG
T ss_pred CcCCcCCChHHhHHHHcCCCcceeeccCCcc
Confidence 55555543322 234445555555555543
No 47
>PRK06893 DNA replication initiation factor; Validated
Probab=98.60 E-value=3.6e-07 Score=96.64 Aligned_cols=148 Identities=14% Similarity=0.173 Sum_probs=90.6
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhcccccceEEEeechhhhccCChHHHHHHHHHHHhcccCCccccccchHHHHHhhh
Q 001458 19 VRMIGICGMGGLGKTTIARVVYDLISHEFEASGFLDNVREISSKGGLVSLQRQLLSQLLKLADNSIWNVFDGIDMLGSRL 98 (1074)
Q Consensus 19 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L 98 (1074)
.+.+.|||+.|+|||+||+++++....+...+.|+. .... ..... .+.+.+
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~----~~~~---~~~~~----------------------~~~~~~ 89 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIP----LSKS---QYFSP----------------------AVLENL 89 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEee----HHHh---hhhhH----------------------HHHhhc
Confidence 356899999999999999999998766556667765 1100 00000 111122
Q ss_pred CCCeEEEEEcCCCCh---HHHHH-HhcCCCC-CCCCCEEEEEeCCh----------hhhhhcCCCceecCCCCChHHHHH
Q 001458 99 QRKKVLLVIDDVVDV---KQLQS-LAGNREW-FGSGSRIIITSRDE----------HLLKTHGVDEVYKPHGLNYDEALQ 163 (1074)
Q Consensus 99 ~~kr~LlVLDdv~~~---~~l~~-l~~~~~~-~~~gs~IiiTTR~~----------~v~~~~~~~~~~~l~~L~~~ea~~ 163 (1074)
+ +.-+|||||++.. .+|+. +....+. ...|.++||+|.+. .+...++....++++++++++.++
T Consensus 90 ~-~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~ 168 (229)
T PRK06893 90 E-QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKII 168 (229)
T ss_pred c-cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHH
Confidence 2 2348999999864 33432 2111111 12466665555442 455555556689999999999999
Q ss_pred HHHHhhhcCCCCChhHHHHHHHHHHHhCCCchHHH
Q 001458 164 LFNMKAFKTYQPLQECVQLSARIIRYAGGLPLALE 198 (1074)
Q Consensus 164 Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~ 198 (1074)
++.++++...-.. -.++..-|++.+.|..-++.
T Consensus 169 iL~~~a~~~~l~l--~~~v~~~L~~~~~~d~r~l~ 201 (229)
T PRK06893 169 VLQRNAYQRGIEL--SDEVANFLLKRLDRDMHTLF 201 (229)
T ss_pred HHHHHHHHcCCCC--CHHHHHHHHHhccCCHHHHH
Confidence 9999887443211 23456667777776655443
No 48
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.58 E-value=4.4e-08 Score=97.11 Aligned_cols=126 Identities=20% Similarity=0.248 Sum_probs=46.9
Q ss_pred hCCCCCceEEecCccCCC--CccccCcCceEEEecCCCCCCCCCCCCCCCceEEEcCcCCcccccccc-cCCCCCcEEEc
Q 001458 363 SKMTNLRLLKICNLQLPN--GLEYLSNRLRLLGWRGYPLKFLPSNLQMDKTIEIYMCYSRIGELWKGI-KHLDKLKVMIL 439 (1074)
Q Consensus 363 ~~l~~Lr~L~l~~~~l~~--~~~~l~~~L~~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~l~~~~-~~l~~L~~L~L 439 (1074)
.+..++|.|++.++.++. ++.....+|+.|++++|.++.++..-.+.+|++|++++|+|+.+..++ ..+++|+.|++
T Consensus 16 ~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L 95 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYL 95 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-
T ss_pred ccccccccccccccccccccchhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchHHhCCcCCEEEC
Confidence 344567888888888763 444334578888888888888876668888888888888888886555 36788888888
Q ss_pred cCCCCCC--CCCCCCCCCCCcEEEecCcccccccC---cchhcCCCccEEeccC
Q 001458 440 SHSENLI--RMPDFTGAPNLEKLILEGCTRLYEIH---PSLLLHNKLIILNMKD 488 (1074)
Q Consensus 440 s~~~~~~--~~~~~~~l~~L~~L~L~~~~~l~~~~---~~i~~l~~L~~L~L~~ 488 (1074)
++|++.. .+..+..+++|++|+|.+|+....-. ..+..+++|+.||-..
T Consensus 96 ~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 96 SNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred cCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEE
Confidence 8886532 22336677888888888877543311 2345566666666543
No 49
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.58 E-value=1.3e-08 Score=106.91 Aligned_cols=239 Identities=22% Similarity=0.197 Sum_probs=122.5
Q ss_pred CCCceEEEcCcCCccc-----ccccccCCCCCcEEEccCCC---CCCCCC--------CCCCCCCCcEEEecCccccccc
Q 001458 408 MDKTIEIYMCYSRIGE-----LWKGIKHLDKLKVMILSHSE---NLIRMP--------DFTGAPNLEKLILEGCTRLYEI 471 (1074)
Q Consensus 408 ~~~L~~L~L~~~~i~~-----l~~~~~~l~~L~~L~Ls~~~---~~~~~~--------~~~~l~~L~~L~L~~~~~l~~~ 471 (1074)
+..+..++|++|.++. +.+.+.+.+.|+..++|+-- ....+| .+.+.|+|++|+|+.|..-..-
T Consensus 29 ~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g 108 (382)
T KOG1909|consen 29 MDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKG 108 (382)
T ss_pred cCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccc
Confidence 3344455555554432 23344555556666555431 111222 1344556666666665543333
Q ss_pred Cc----chhcCCCccEEeccCCCCCCcCCccccccccCceecCcCcccccCCCCCcEEeccCCCCCC----cCchhhhcC
Q 001458 472 HP----SLLLHNKLIILNMKDCTSLITLPGKILMKSLEKLNLKSLPTTISGLKCLSTLDVSGDLKFR----EFPEIVEHM 543 (1074)
Q Consensus 472 ~~----~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~l~~~l~~l~~L~~L~L~~~~~~~----~~~~~l~~l 543 (1074)
++ -+.++..|++|.|.+|-. .......--..|..|. .......-+.|+++....|.... .+...+...
T Consensus 109 ~~~l~~ll~s~~~L~eL~L~N~Gl-g~~ag~~l~~al~~l~---~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~ 184 (382)
T KOG1909|consen 109 IRGLEELLSSCTDLEELYLNNCGL-GPEAGGRLGRALFELA---VNKKAASKPKLRVFICGRNRLENGGATALAEAFQSH 184 (382)
T ss_pred hHHHHHHHHhccCHHHHhhhcCCC-ChhHHHHHHHHHHHHH---HHhccCCCcceEEEEeeccccccccHHHHHHHHHhc
Confidence 32 234456666666666532 1111110001111111 11223445567777777775544 233456677
Q ss_pred CCccEEEccCcCCcc-----CchhhhcCCCCCEEeccCCCCCcc----ccccccCCCCCCEEEecCCCCCCccch----h
Q 001458 544 EHLSELHLEGTAIRG-----LPLSIELLSGLVLLNLKNCRSLEI----LPVTVSNLKCLRSLKLSGCSKLKKFPE----I 610 (1074)
Q Consensus 544 ~~L~~L~L~~~~i~~-----lp~~~~~l~~L~~L~L~~~~~~~~----l~~~l~~l~~L~~L~Ls~~~~~~~~p~----~ 610 (1074)
+.|+.+.+..|.|.. +...+..+++|+.|+|++|..... +...+..+++|+.|++++|.....-.. .
T Consensus 185 ~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~a 264 (382)
T KOG1909|consen 185 PTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDA 264 (382)
T ss_pred cccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHH
Confidence 788888888887765 334567778888888887765543 333455667777777777755433221 1
Q ss_pred -hcCCCCCCEEEcCCCcccc-----cCcchhccCCCCEeecCCCCC
Q 001458 611 -VRSMKDLSELFLDGTSIKE-----VPSSIELLTKLELLNLSDCKN 650 (1074)
Q Consensus 611 -~~~l~~L~~L~L~~~~l~~-----lp~~~~~l~~L~~L~L~~~~~ 650 (1074)
-...++|+.|.+.+|.|+. +...+...+.|..|+|++|..
T Consensus 265 l~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 265 LKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 1234566666666665542 222233455555666655553
No 50
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.56 E-value=3e-07 Score=101.92 Aligned_cols=161 Identities=24% Similarity=0.430 Sum_probs=90.3
Q ss_pred hcCCCCCCEEEcCCCcccccCcchhccCCCCEeecCCCCCCccccchhcccCCCCEEEccCCcCCCcCcccccCCCCccE
Q 001458 611 VRSMKDLSELFLDGTSIKEVPSSIELLTKLELLNLSDCKNLVRLPSSIIALKSLKTLNLSGCFKLENVPETLGQIESLEE 690 (1074)
Q Consensus 611 ~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~L~~c~~l~~~p~~l~~l~~L~~ 690 (1074)
+..+.+++.|++++|.++.+|. -.++|+.|.+++|..+..+|..+ .++|+.|++++|..+..+|. +|+.
T Consensus 48 ~~~~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~------sLe~ 116 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE------SVRS 116 (426)
T ss_pred HHHhcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc------ccce
Confidence 3445677777777777777772 23468888888888877777654 35888888888876666664 4666
Q ss_pred EEcCCCCCCCCCCcccccccccccccccccCCCCCCCCCccEEecCCCCC-CCCCCccccCCCCCCCeEecCCCcCcccC
Q 001458 691 LDISGTAVPHSTSWYSYIPINLMRKSVALKLPSLSGLCSLRKLNLTDCNL-MEGALPSDIGNLCSLKELYLSKNSFVSLP 769 (1074)
Q Consensus 691 L~L~~n~i~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~~-~~~~~p~~l~~l~~L~~L~Ls~n~l~~lp 769 (1074)
|++.++....... +| ++|+.|.+.+++. ....+|.. -.++|+.|++++|....+|
T Consensus 117 L~L~~n~~~~L~~-----------------LP-----ssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i~LP 172 (426)
T PRK15386 117 LEIKGSATDSIKN-----------------VP-----NGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNIILP 172 (426)
T ss_pred EEeCCCCCccccc-----------------Cc-----chHhheeccccccccccccccc--cCCcccEEEecCCCcccCc
Confidence 6665544322110 22 2566666644321 11111111 1146666666666655555
Q ss_pred ccccccCCCCEeeccCCc--CCC-cCCCCCCCcceEeecCccc
Q 001458 770 TSITHLSKLLNIELEDCK--RLQ-SLPQLPPNIRQVRVNGCAS 809 (1074)
Q Consensus 770 ~~i~~l~~L~~L~L~~c~--~L~-~lp~lp~sL~~L~i~~C~~ 809 (1074)
..+. .+|+.|+++.+. .+. ..+.+|+++ .|.+.+|-+
T Consensus 173 ~~LP--~SLk~L~ls~n~~~sLeI~~~sLP~nl-~L~f~n~lk 212 (426)
T PRK15386 173 EKLP--ESLQSITLHIEQKTTWNISFEGFPDGL-DIDLQNSVL 212 (426)
T ss_pred cccc--ccCcEEEecccccccccCccccccccc-Eechhhhcc
Confidence 4433 466666665432 111 112355666 666666643
No 51
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.51 E-value=2e-06 Score=91.32 Aligned_cols=164 Identities=18% Similarity=0.203 Sum_probs=95.5
Q ss_pred HHHHHHHhhcCCCCCeEEEEEEccCCCcHHHHHHHHHHHhcccccceEEEeechhhhccCChHHHHHHHHHHHhcccCCc
Q 001458 4 RCEKLRFLMDSGSSDVRMIGICGMGGLGKTTIARVVYDLISHEFEASGFLDNVREISSKGGLVSLQRQLLSQLLKLADNS 83 (1074)
Q Consensus 4 ~~~~l~~lL~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~ll~~l~~~~~~~ 83 (1074)
-++++..++.. ...+.|.|+|+.|+|||++|+.+++..........|+. +...... ...++
T Consensus 25 ~~~~l~~~~~~--~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~-~~~~~~~------~~~~~---------- 85 (226)
T TIGR03420 25 LLAALRQLAAG--KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLP-LAELAQA------DPEVL---------- 85 (226)
T ss_pred HHHHHHHHHhc--CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEe-HHHHHHh------HHHHH----------
Confidence 46677776542 33567899999999999999999987654444445554 2211100 00111
Q ss_pred cccccchHHHHHhhhCCCeEEEEEcCCCChH---H-HHHHhcCCCC-CCCCCEEEEEeCChh---------hhhhcCCCc
Q 001458 84 IWNVFDGIDMLGSRLQRKKVLLVIDDVVDVK---Q-LQSLAGNREW-FGSGSRIIITSRDEH---------LLKTHGVDE 149 (1074)
Q Consensus 84 ~~~~~~~~~~i~~~L~~kr~LlVLDdv~~~~---~-l~~l~~~~~~-~~~gs~IiiTTR~~~---------v~~~~~~~~ 149 (1074)
+.+.+ .-+||+||++... . .+.+...... ...+.+||+||+... +...+....
T Consensus 86 ------------~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~~~ 152 (226)
T TIGR03420 86 ------------EGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWGL 152 (226)
T ss_pred ------------hhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhcCe
Confidence 11222 2389999997653 1 2233222111 123457899887532 222222245
Q ss_pred eecCCCCChHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCCchHHHHHH
Q 001458 150 VYKPHGLNYDEALQLFNMKAFKTYQPLQECVQLSARIIRYAGGLPLALEVLG 201 (1074)
Q Consensus 150 ~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~g 201 (1074)
.+++++++.++...++...+-+..-. --.+....+++.+.|.|..+.-+-
T Consensus 153 ~i~l~~l~~~e~~~~l~~~~~~~~~~--~~~~~l~~L~~~~~gn~r~L~~~l 202 (226)
T TIGR03420 153 VFQLPPLSDEEKIAALQSRAARRGLQ--LPDEVADYLLRHGSRDMGSLMALL 202 (226)
T ss_pred eEecCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHhccCCHHHHHHHH
Confidence 78999999999999987755322111 122455677777888887766553
No 52
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.51 E-value=7.3e-07 Score=111.03 Aligned_cols=206 Identities=16% Similarity=0.187 Sum_probs=128.4
Q ss_pred CCeEEEEEcCCCChHH-----HHHHhcCCC---CCCCCCEEEEEeCCh--hhhhhcCCCceecCCCCChHHHHHHHHHhh
Q 001458 100 RKKVLLVIDDVVDVKQ-----LQSLAGNRE---WFGSGSRIIITSRDE--HLLKTHGVDEVYKPHGLNYDEALQLFNMKA 169 (1074)
Q Consensus 100 ~kr~LlVLDdv~~~~~-----l~~l~~~~~---~~~~gs~IiiTTR~~--~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a 169 (1074)
.++.++|+||+.-.+. ++.++.... ....-.-.+.|.+.. .+...-.....+.+.+|+..+..++.....
T Consensus 153 ~~plVi~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l 232 (849)
T COG3899 153 EHPLVIVLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATL 232 (849)
T ss_pred cCCeEEEEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHh
Confidence 4699999999954332 444443322 000112233344443 111222334689999999999999998766
Q ss_pred hcCCCCChhHHHHHHHHHHHhCCCchHHHHHHhhcCCC-------CHHHHHHHHHHHhcCC-CchhHHHHhhccccCcHh
Q 001458 170 FKTYQPLQECVQLSARIIRYAGGLPLALEVLGSFLSGR-------SVDEWRSTLERLEIEP-PSEILDILQISFDGLQEL 241 (1074)
Q Consensus 170 ~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~g~~L~~~-------~~~~w~~~l~~l~~~~-~~~i~~~l~~sy~~L~~~ 241 (1074)
.... ....+....|+++..|+|+.+..+-..+... ....|..-...+.... .+.+.+.+..-.+.||+.
T Consensus 233 ~~~~---~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~~~~~~~vv~~l~~rl~kL~~~ 309 (849)
T COG3899 233 GCTK---LLPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGILATTDAVVEFLAARLQKLPGT 309 (849)
T ss_pred CCcc---cccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCCchhhHHHHHHHHHHHhcCCHH
Confidence 3322 2234567899999999999999998887652 3345554444433221 133566788899999999
Q ss_pred hhhhheeeecccCCCCHHHHHHHhhhCCCCcccchhhhhcccceEEe---------CC---eEehHHHHHHHHHHHhhc
Q 001458 242 EKKIFLDIACFFKGNDRDYVTNFLEGCGFHPVIGIRVLIEKCLITVH---------NN---TLWMHDLLQELGQQIVQR 308 (1074)
Q Consensus 242 ~k~~fl~~a~f~~~~~~~~l~~~~~~~g~~~~~~i~~L~~~sLi~~~---------~~---~~~mHdli~~~~~~i~~~ 308 (1074)
.+++.-..||+...++.+.+..++..........+-.....++|-.. .. +-..||.+|+.+-....+
T Consensus 310 t~~Vl~~AA~iG~~F~l~~La~l~~~~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~~vqqaaY~~i~~ 388 (849)
T COG3899 310 TREVLKAAACIGNRFDLDTLAALAEDSPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLHDRVQQAAYNLIPE 388 (849)
T ss_pred HHHHHHHHHHhCccCCHHHHHHHHhhchHHHHHHHHHHhHhhceeccccccccccccchhhHHhhHHHHHHHHhccCch
Confidence 99999999999999988887777765433332222222223333321 11 337899999988665443
No 53
>PF13173 AAA_14: AAA domain
Probab=98.45 E-value=3.1e-07 Score=87.56 Aligned_cols=119 Identities=19% Similarity=0.223 Sum_probs=76.3
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHhcccccceEEEeechhhhccCChHHHHHHHHHHHhcccCCccccccchHHHHHhhhC
Q 001458 20 RMIGICGMGGLGKTTIARVVYDLISHEFEASGFLDNVREISSKGGLVSLQRQLLSQLLKLADNSIWNVFDGIDMLGSRLQ 99 (1074)
Q Consensus 20 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~ 99 (1074)
+++.|.|+-|+||||+++++++... .-...+|+. ..... . .. .. . . +..+.+.+...
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~-~~~~~~yi~-~~~~~------~-~~-~~-~-----------~-~~~~~~~~~~~ 59 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL-PPENILYIN-FDDPR------D-RR-LA-D-----------P-DLLEYFLELIK 59 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc-ccccceeec-cCCHH------H-HH-Hh-h-----------h-hhHHHHHHhhc
Confidence 6899999999999999999998765 223445543 11100 0 00 00 0 0 01233333334
Q ss_pred CCeEEEEEcCCCChHHHHHHhcCCCCCCCCCEEEEEeCChhhhhh------cCCCceecCCCCChHHH
Q 001458 100 RKKVLLVIDDVVDVKQLQSLAGNREWFGSGSRIIITSRDEHLLKT------HGVDEVYKPHGLNYDEA 161 (1074)
Q Consensus 100 ~kr~LlVLDdv~~~~~l~~l~~~~~~~~~gs~IiiTTR~~~v~~~------~~~~~~~~l~~L~~~ea 161 (1074)
.++.+||||+|....+|......+...++..+||+|+........ .|....+++.+|+..|-
T Consensus 60 ~~~~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 60 PGKKYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred cCCcEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 477899999999988887776655544567899999998665532 12234678888887763
No 54
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.37 E-value=1.1e-06 Score=84.50 Aligned_cols=113 Identities=21% Similarity=0.249 Sum_probs=73.4
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhccc-----ccceEEEeechhhhccCChHHHHHHHHHHHhcccCCccccccchHHH
Q 001458 19 VRMIGICGMGGLGKTTIARVVYDLISHE-----FEASGFLDNVREISSKGGLVSLQRQLLSQLLKLADNSIWNVFDGIDM 93 (1074)
Q Consensus 19 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~-----F~~~~~~~~~~~~s~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~ 93 (1074)
-+++.|+|.+|+|||++++.+++..... -..++|+. .........+..+++.++...... ..+..+..+.
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~i~~~l~~~~~~-~~~~~~l~~~ 78 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVN----CPSSRTPRDFAQEILEALGLPLKS-RQTSDELRSL 78 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEE----HHHHSSHHHHHHHHHHHHT-SSSS-TS-HHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEE----eCCCCCHHHHHHHHHHHhCccccc-cCCHHHHHHH
Confidence 4689999999999999999999866442 23344554 333447788899999887544333 2344555566
Q ss_pred HHhhhCCCe-EEEEEcCCCCh-H--HHHHHhcCCCCCCCCCEEEEEeCC
Q 001458 94 LGSRLQRKK-VLLVIDDVVDV-K--QLQSLAGNREWFGSGSRIIITSRD 138 (1074)
Q Consensus 94 i~~~L~~kr-~LlVLDdv~~~-~--~l~~l~~~~~~~~~gs~IiiTTR~ 138 (1074)
+.+.+...+ .+||+|+++.. . .++.+....+ ..+.+||+..++
T Consensus 79 ~~~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 79 LIDALDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HHHHHHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 777666554 59999999877 3 3555543333 567788888776
No 55
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.29 E-value=7e-06 Score=95.09 Aligned_cols=162 Identities=21% Similarity=0.277 Sum_probs=95.3
Q ss_pred HHHhhcCCCCCeEEEEEEccCCCcHHHHHHHHHHHhcccccceEEEeechhhhccCChHHHHHHHHHHHhcccCCccccc
Q 001458 8 LRFLMDSGSSDVRMIGICGMGGLGKTTIARVVYDLISHEFEASGFLDNVREISSKGGLVSLQRQLLSQLLKLADNSIWNV 87 (1074)
Q Consensus 8 l~~lL~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~ll~~l~~~~~~~~~~~ 87 (1074)
+..++. ....+.+.++|++|+||||+|+.+++.....|.. +.. ...+..+ .++++....
T Consensus 27 L~~~i~--~~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~---l~a-----~~~~~~~-ir~ii~~~~---------- 85 (413)
T PRK13342 27 LRRMIE--AGRLSSMILWGPPGTGKTTLARIIAGATDAPFEA---LSA-----VTSGVKD-LREVIEEAR---------- 85 (413)
T ss_pred HHHHHH--cCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEE---Eec-----ccccHHH-HHHHHHHHH----------
Confidence 555564 3345678889999999999999999977655422 111 0112221 122222210
Q ss_pred cchHHHHHhhhCCCeEEEEEcCCCCh--HHHHHHhcCCCCCCCCCEEEEE--eCChh--hhh-hcCCCceecCCCCChHH
Q 001458 88 FDGIDMLGSRLQRKKVLLVIDDVVDV--KQLQSLAGNREWFGSGSRIIIT--SRDEH--LLK-THGVDEVYKPHGLNYDE 160 (1074)
Q Consensus 88 ~~~~~~i~~~L~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~gs~IiiT--TR~~~--v~~-~~~~~~~~~l~~L~~~e 160 (1074)
.....+++.+|++|+++.. .+.+.+..... .|..++|. |.+.. +.. .......+.+++++.++
T Consensus 86 -------~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le---~~~iilI~att~n~~~~l~~aL~SR~~~~~~~~ls~e~ 155 (413)
T PRK13342 86 -------QRRSAGRRTILFIDEIHRFNKAQQDALLPHVE---DGTITLIGATTENPSFEVNPALLSRAQVFELKPLSEED 155 (413)
T ss_pred -------HhhhcCCceEEEEechhhhCHHHHHHHHHHhh---cCcEEEEEeCCCChhhhccHHHhccceeeEeCCCCHHH
Confidence 0111457889999999865 35556555433 35555553 33321 111 11223578999999999
Q ss_pred HHHHHHHhhhcCCCCC-hhHHHHHHHHHHHhCCCchHHHHH
Q 001458 161 ALQLFNMKAFKTYQPL-QECVQLSARIIRYAGGLPLALEVL 200 (1074)
Q Consensus 161 a~~Lf~~~a~~~~~~~-~~~~~~~~~i~~~~~GlPLal~~~ 200 (1074)
..+++.+.+....... .-..+....++++++|.+..+.-+
T Consensus 156 i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~ 196 (413)
T PRK13342 156 IEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNL 196 (413)
T ss_pred HHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHH
Confidence 9999987653211111 122456778899999998765433
No 56
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.26 E-value=3.7e-06 Score=93.45 Aligned_cols=134 Identities=21% Similarity=0.386 Sum_probs=94.5
Q ss_pred hhccCCCCEeecCCCCCCccccchhcccCCCCEEEccCCcCCCcCcccccCCCCccEEEcCCC-CCCCCCCccccccccc
Q 001458 634 IELLTKLELLNLSDCKNLVRLPSSIIALKSLKTLNLSGCFKLENVPETLGQIESLEELDISGT-AVPHSTSWYSYIPINL 712 (1074)
Q Consensus 634 ~~~l~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~L~~c~~l~~~p~~l~~l~~L~~L~L~~n-~i~~~~~~~~~~~~~~ 712 (1074)
+..+.+++.|++++| .+..+|. -.++|++|.+++|..+..+|..+ .++|+.|++++| .+..
T Consensus 48 ~~~~~~l~~L~Is~c-~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~s------------ 109 (426)
T PRK15386 48 IEEARASGRLYIKDC-DIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISG------------ 109 (426)
T ss_pred HHHhcCCCEEEeCCC-CCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccc------------
Confidence 455789999999999 5677772 34579999999999998888765 368999999987 3322
Q ss_pred ccccccccCCCCCCCCCccEEecCCCCCCC-CCCccccCCCCCCCeEecCCCcCc---ccCcccccc-CCCCEeeccCCc
Q 001458 713 MRKSVALKLPSLSGLCSLRKLNLTDCNLME-GALPSDIGNLCSLKELYLSKNSFV---SLPTSITHL-SKLLNIELEDCK 787 (1074)
Q Consensus 713 ~~~~~~~~l~~l~~l~~L~~L~Ls~~~~~~-~~~p~~l~~l~~L~~L~Ls~n~l~---~lp~~i~~l-~~L~~L~L~~c~ 787 (1074)
+| ++|+.|+++++.... ..+| ++|+.|.+.+++.. .+|. .| ++|+.|++++|.
T Consensus 110 --------LP-----~sLe~L~L~~n~~~~L~~LP------ssLk~L~I~~~n~~~~~~lp~---~LPsSLk~L~Is~c~ 167 (426)
T PRK15386 110 --------LP-----ESVRSLEIKGSATDSIKNVP------NGLTSLSINSYNPENQARIDN---LISPSLKTLSLTGCS 167 (426)
T ss_pred --------cc-----cccceEEeCCCCCcccccCc------chHhheecccccccccccccc---ccCCcccEEEecCCC
Confidence 22 368888887654321 1233 46778888654321 2221 22 689999999998
Q ss_pred CCCcCCCCCCCcceEeecCc
Q 001458 788 RLQSLPQLPPNIRQVRVNGC 807 (1074)
Q Consensus 788 ~L~~lp~lp~sL~~L~i~~C 807 (1074)
.+..-+.+|.+|+.|.++.+
T Consensus 168 ~i~LP~~LP~SLk~L~ls~n 187 (426)
T PRK15386 168 NIILPEKLPESLQSITLHIE 187 (426)
T ss_pred cccCcccccccCcEEEeccc
Confidence 77544459999999998764
No 57
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.25 E-value=2.4e-05 Score=92.88 Aligned_cols=232 Identities=16% Similarity=0.122 Sum_probs=118.2
Q ss_pred hhHHHHHHHhhcC---CCCCeEEEEEEccCCCcHHHHHHHHHHHhcc-----ccc--ceEEEeechhhhccCChHHHHHH
Q 001458 2 DSRCEKLRFLMDS---GSSDVRMIGICGMGGLGKTTIARVVYDLISH-----EFE--ASGFLDNVREISSKGGLVSLQRQ 71 (1074)
Q Consensus 2 ~~~~~~l~~lL~~---~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~-----~F~--~~~~~~~~~~~s~~~~~~~l~~~ 71 (1074)
|.++++|...|.. ++....++.|+|++|.|||++++.|.+.+.. ... ..+++. +. .......+...
T Consensus 761 EeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYIN-Cm---~Lstp~sIYqv 836 (1164)
T PTZ00112 761 EKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEIN-GM---NVVHPNAAYQV 836 (1164)
T ss_pred HHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEe-CC---ccCCHHHHHHH
Confidence 4566677666653 2223467789999999999999999876532 112 123333 21 12344566667
Q ss_pred HHHHHhcccCCccccccchHHHHHhhhC---CCeEEEEEcCCCChH--HHHHHhcCCCCC-CCCCEEEE--EeCChh---
Q 001458 72 LLSQLLKLADNSIWNVFDGIDMLGSRLQ---RKKVLLVIDDVVDVK--QLQSLAGNREWF-GSGSRIII--TSRDEH--- 140 (1074)
Q Consensus 72 ll~~l~~~~~~~~~~~~~~~~~i~~~L~---~kr~LlVLDdv~~~~--~l~~l~~~~~~~-~~gs~Iii--TTR~~~--- 140 (1074)
|..++............+....+.+.+. +...+||||+|+... +-+.|...+.|. ..+++|+| +|.+-.
T Consensus 837 I~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNdlDLpe 916 (1164)
T PTZ00112 837 LYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNTMDLPE 916 (1164)
T ss_pred HHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCchhcch
Confidence 7777644332222233334455555442 223689999998653 112222111121 24566554 333311
Q ss_pred -----hhhhcCCCceecCCCCChHHHHHHHHHhhhcCC-CCChh-HHHHHHHHHHHhCC-CchHHHHHHhhcC--C---C
Q 001458 141 -----LLKTHGVDEVYKPHGLNYDEALQLFNMKAFKTY-QPLQE-CVQLSARIIRYAGG-LPLALEVLGSFLS--G---R 207 (1074)
Q Consensus 141 -----v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~-~~~~~-~~~~~~~i~~~~~G-lPLal~~~g~~L~--~---~ 207 (1074)
+...++ ...+..++.+.++-.+++..++-... ...++ .+-+|+.++ ...| .=.||.++-.+.. + .
T Consensus 917 rLdPRLRSRLg-~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVA-q~SGDARKALDILRrAgEikegskV 994 (1164)
T PTZ00112 917 RLIPRCRSRLA-FGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVA-NVSGDIRKALQICRKAFENKRGQKI 994 (1164)
T ss_pred hhhhhhhhccc-cccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhh-hcCCHHHHHHHHHHHHHhhcCCCcc
Confidence 222222 22366799999999999998875321 12222 333333333 3333 3345444433221 1 2
Q ss_pred CHHHHHHHHHHHhcCCCchhHHHHhhccccCcHhhhhhh
Q 001458 208 SVDEWRSTLERLEIEPPSEILDILQISFDGLQELEKKIF 246 (1074)
Q Consensus 208 ~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~f 246 (1074)
..+.-+.+...+...+ +..+ ...||.++|-.+
T Consensus 995 T~eHVrkAleeiE~sr---I~e~----IktLPlHqKLVL 1026 (1164)
T PTZ00112 995 VPRDITEATNQLFDSP---LTNA----INYLPWPFKMFL 1026 (1164)
T ss_pred CHHHHHHHHHHHHhhh---HHHH----HHcCCHHHHHHH
Confidence 3344555554443222 2222 356777766544
No 58
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.25 E-value=7.8e-08 Score=103.36 Aligned_cols=230 Identities=22% Similarity=0.322 Sum_probs=110.7
Q ss_pred cCCCCCEEeccCCCCCcccc--ccccCCCCCCEEEecCCCCCCc--cchhhcCCCCCCEEEcCCCcc---cccCcchhcc
Q 001458 565 LLSGLVLLNLKNCRSLEILP--VTVSNLKCLRSLKLSGCSKLKK--FPEIVRSMKDLSELFLDGTSI---KEVPSSIELL 637 (1074)
Q Consensus 565 ~l~~L~~L~L~~~~~~~~l~--~~l~~l~~L~~L~Ls~~~~~~~--~p~~~~~l~~L~~L~L~~~~l---~~lp~~~~~l 637 (1074)
.+++|++|++..|..++... .....+++|++|++++|..... +.....++..++.+.+.||.= +.+-..-...
T Consensus 188 ~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~ 267 (483)
T KOG4341|consen 188 YCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYC 267 (483)
T ss_pred hcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccC
Confidence 44555555555554433221 1123456666666666654322 223344445555555554411 1111112233
Q ss_pred CCCCEeecCCCCCCcccc--chhcccCCCCEEEccCCcCCCcCcc--cccCCCCccEEEcCCCCCCCCCCcccccccccc
Q 001458 638 TKLELLNLSDCKNLVRLP--SSIIALKSLKTLNLSGCFKLENVPE--TLGQIESLEELDISGTAVPHSTSWYSYIPINLM 713 (1074)
Q Consensus 638 ~~L~~L~L~~~~~l~~~~--~~~~~l~~L~~L~L~~c~~l~~~p~--~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~~ 713 (1074)
.-+..+++..|..++... ..-..+..|+.|..++|...+..+- --.+..+|+.|.++++.--....+
T Consensus 268 ~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~f--------- 338 (483)
T KOG4341|consen 268 LEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGF--------- 338 (483)
T ss_pred hHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhh---------
Confidence 444555555554443321 1223455666666666655443221 123456666666666542110000
Q ss_pred cccccccCCCCCCCCCccEEecCCCCCCCCC-CccccCCCCCCCeEecCCCcCc------ccCccccccCCCCEeeccCC
Q 001458 714 RKSVALKLPSLSGLCSLRKLNLTDCNLMEGA-LPSDIGNLCSLKELYLSKNSFV------SLPTSITHLSKLLNIELEDC 786 (1074)
Q Consensus 714 ~~~~~~~l~~l~~l~~L~~L~Ls~~~~~~~~-~p~~l~~l~~L~~L~Ls~n~l~------~lp~~i~~l~~L~~L~L~~c 786 (1074)
.+--.+.+.|+.+++..|....+. +...-.+++.|+.|.|++|... .+..+-..+..|+.|.+++|
T Consensus 339 -------t~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~ 411 (483)
T KOG4341|consen 339 -------TMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNC 411 (483)
T ss_pred -------hhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCC
Confidence 011245667777777777654322 3333346677777777776432 22333355667777788887
Q ss_pred cCCCcCC----CCCCCcceEeecCcccc
Q 001458 787 KRLQSLP----QLPPNIRQVRVNGCASL 810 (1074)
Q Consensus 787 ~~L~~lp----~lp~sL~~L~i~~C~~L 810 (1074)
+.+..-. ...++|+.+++.+|...
T Consensus 412 p~i~d~~Le~l~~c~~Leri~l~~~q~v 439 (483)
T KOG4341|consen 412 PLITDATLEHLSICRNLERIELIDCQDV 439 (483)
T ss_pred CCchHHHHHHHhhCcccceeeeechhhh
Confidence 7654321 12245555555555433
No 59
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.22 E-value=1.3e-05 Score=78.60 Aligned_cols=120 Identities=16% Similarity=0.149 Sum_probs=65.4
Q ss_pred hhHHHHHHHhhcCCCCCeEEEEEEccCCCcHHHHHHHHHHHhcccccceEEEeechhhhccCChHHHHHHHHHHHhcccC
Q 001458 2 DSRCEKLRFLMDSGSSDVRMIGICGMGGLGKTTIARVVYDLISHEFEASGFLDNVREISSKGGLVSLQRQLLSQLLKLAD 81 (1074)
Q Consensus 2 ~~~~~~l~~lL~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~ll~~l~~~~~ 81 (1074)
+..++++...+.. ...+.+.|+|.+|+||||+|+++++.+...-..++++. ..+..... ...... .. .
T Consensus 4 ~~~~~~i~~~~~~--~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~-~~~~~~~~---~~~~~~-~~-~---- 71 (151)
T cd00009 4 EEAIEALREALEL--PPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLN-ASDLLEGL---VVAELF-GH-F---- 71 (151)
T ss_pred HHHHHHHHHHHhC--CCCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEe-hhhhhhhh---HHHHHh-hh-h----
Confidence 3456666666653 23467899999999999999999997753323334443 22111110 000000 00 0
Q ss_pred CccccccchHHHHHhhhCCCeEEEEEcCCCCh--H---HHHHHhcCCCCC---CCCCEEEEEeCChh
Q 001458 82 NSIWNVFDGIDMLGSRLQRKKVLLVIDDVVDV--K---QLQSLAGNREWF---GSGSRIIITSRDEH 140 (1074)
Q Consensus 82 ~~~~~~~~~~~~i~~~L~~kr~LlVLDdv~~~--~---~l~~l~~~~~~~---~~gs~IiiTTR~~~ 140 (1074)
............++.++|+||++.. . .+..+....... ..+.+||+||.+..
T Consensus 72 -------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 -------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred -------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 0011112223456789999999864 2 233333332221 46788999888753
No 60
>PLN03150 hypothetical protein; Provisional
Probab=98.19 E-value=3.3e-06 Score=102.81 Aligned_cols=105 Identities=29% Similarity=0.392 Sum_probs=50.5
Q ss_pred CCEEEecCCCCCCccchhhcCCCCCCEEEcCCCccc-ccCcchhccCCCCEeecCCCCCCccccchhcccCCCCEEEccC
Q 001458 593 LRSLKLSGCSKLKKFPEIVRSMKDLSELFLDGTSIK-EVPSSIELLTKLELLNLSDCKNLVRLPSSIIALKSLKTLNLSG 671 (1074)
Q Consensus 593 L~~L~Ls~~~~~~~~p~~~~~l~~L~~L~L~~~~l~-~lp~~~~~l~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~L~~ 671 (1074)
++.|+|++|.....+|..+..+++|+.|+|++|.+. .+|..+..+++|+.|+|++|.....+|..+..+++|+.|+|++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 334444444444444444444444444444444443 3444444555555555555544444555555555555555555
Q ss_pred CcCCCcCcccccCC-CCccEEEcCCCC
Q 001458 672 CFKLENVPETLGQI-ESLEELDISGTA 697 (1074)
Q Consensus 672 c~~l~~~p~~l~~l-~~L~~L~L~~n~ 697 (1074)
|...+.+|..++.+ .++..+++.+|.
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCc
Confidence 55555555444432 234455555543
No 61
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.19 E-value=1.2e-07 Score=97.26 Aligned_cols=174 Identities=28% Similarity=0.359 Sum_probs=107.6
Q ss_pred CcEEeccCCCCCC-cCchhhhcCCCccEEEccCcCCcc-CchhhhcCCCCCEEeccCCCCCcccc--ccccCCCCCCEEE
Q 001458 522 LSTLDVSGDLKFR-EFPEIVEHMEHLSELHLEGTAIRG-LPLSIELLSGLVLLNLKNCRSLEILP--VTVSNLKCLRSLK 597 (1074)
Q Consensus 522 L~~L~L~~~~~~~-~~~~~l~~l~~L~~L~L~~~~i~~-lp~~~~~l~~L~~L~L~~~~~~~~l~--~~l~~l~~L~~L~ 597 (1074)
|+.|||++..+.. .+-..+..+.+|+.|.|.|+.+.+ +...+..-.+|+.|+|+.|....... .-+.+++.|..|+
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LN 266 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELN 266 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcC
Confidence 4555555443322 333455666677777777776665 44556666677777777766554322 2255677777777
Q ss_pred ecCCCCCCccch-hhcC-CCCCCEEEcCCCc----ccccCcchhccCCCCEeecCCCCCCcc-ccchhcccCCCCEEEcc
Q 001458 598 LSGCSKLKKFPE-IVRS-MKDLSELFLDGTS----IKEVPSSIELLTKLELLNLSDCKNLVR-LPSSIIALKSLKTLNLS 670 (1074)
Q Consensus 598 Ls~~~~~~~~p~-~~~~-l~~L~~L~L~~~~----l~~lp~~~~~l~~L~~L~L~~~~~l~~-~~~~~~~l~~L~~L~L~ 670 (1074)
|++|......-. .+.. -++|+.|+++|+. ...+..-...+|+|..|+|++|..++. .-..+..++.|++|.++
T Consensus 267 lsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSls 346 (419)
T KOG2120|consen 267 LSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLS 346 (419)
T ss_pred chHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehh
Confidence 777765443211 1111 2467777777762 223333356788888888888865544 33456678888999998
Q ss_pred CCcCCCcCcc---cccCCCCccEEEcCCCC
Q 001458 671 GCFKLENVPE---TLGQIESLEELDISGTA 697 (1074)
Q Consensus 671 ~c~~l~~~p~---~l~~l~~L~~L~L~~n~ 697 (1074)
.|..+ +|+ .+...++|.+|++.|+-
T Consensus 347 RCY~i--~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 347 RCYDI--IPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred hhcCC--ChHHeeeeccCcceEEEEecccc
Confidence 88643 333 36778889999988764
No 62
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.18 E-value=1.2e-05 Score=91.63 Aligned_cols=148 Identities=16% Similarity=0.210 Sum_probs=84.0
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhcccccceEEEeechhhhccCChHHHHHHHHHHHhcccCCccccccchHHHHHhh-
Q 001458 19 VRMIGICGMGGLGKTTIARVVYDLISHEFEASGFLDNVREISSKGGLVSLQRQLLSQLLKLADNSIWNVFDGIDMLGSR- 97 (1074)
Q Consensus 19 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~- 97 (1074)
.+-|.++|++|+|||++|+++++.....|-... ...+....... .......+.+.
T Consensus 156 p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~-------------~~~l~~~~~g~-----------~~~~i~~~f~~a 211 (364)
T TIGR01242 156 PKGVLLYGPPGTGKTLLAKAVAHETNATFIRVV-------------GSELVRKYIGE-----------GARLVREIFELA 211 (364)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhCCCCEEecc-------------hHHHHHHhhhH-----------HHHHHHHHHHHH
Confidence 456899999999999999999997765542111 00111111000 00001111111
Q ss_pred hCCCeEEEEEcCCCChH----------------HHHHHhcCCCCC--CCCCEEEEEeCChh-----hhhhcCCCceecCC
Q 001458 98 LQRKKVLLVIDDVVDVK----------------QLQSLAGNREWF--GSGSRIIITSRDEH-----LLKTHGVDEVYKPH 154 (1074)
Q Consensus 98 L~~kr~LlVLDdv~~~~----------------~l~~l~~~~~~~--~~gs~IiiTTR~~~-----v~~~~~~~~~~~l~ 154 (1074)
-...+.+|++|+++... .+..+......+ ..+.+||.||.... +......+..++++
T Consensus 212 ~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~ 291 (364)
T TIGR01242 212 KEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVP 291 (364)
T ss_pred HhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhCChhhcCcccCceEEEeC
Confidence 12356799999997641 122333222211 24667888887533 22212235678999
Q ss_pred CCChHHHHHHHHHhhhcCCCCC-hhHHHHHHHHHHHhCCCc
Q 001458 155 GLNYDEALQLFNMKAFKTYQPL-QECVQLSARIIRYAGGLP 194 (1074)
Q Consensus 155 ~L~~~ea~~Lf~~~a~~~~~~~-~~~~~~~~~i~~~~~GlP 194 (1074)
..+.++..++|..++.+..... .+ ...+++.+.|..
T Consensus 292 ~P~~~~r~~Il~~~~~~~~l~~~~~----~~~la~~t~g~s 328 (364)
T TIGR01242 292 LPDFEGRLEILKIHTRKMKLAEDVD----LEAIAKMTEGAS 328 (364)
T ss_pred CcCHHHHHHHHHHHHhcCCCCccCC----HHHHHHHcCCCC
Confidence 9999999999998875543222 22 345667777765
No 63
>PRK08727 hypothetical protein; Validated
Probab=98.17 E-value=1.5e-05 Score=84.55 Aligned_cols=145 Identities=13% Similarity=0.082 Sum_probs=85.8
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHhcccccceEEEeechhhhccCChHHHHHHHHHHHhcccCCccccccchHHHHHhhhC
Q 001458 20 RMIGICGMGGLGKTTIARVVYDLISHEFEASGFLDNVREISSKGGLVSLQRQLLSQLLKLADNSIWNVFDGIDMLGSRLQ 99 (1074)
Q Consensus 20 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~ 99 (1074)
..+.|+|..|+|||.||+++++....+...+.|+. .. +....+.. +.+.+
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~----~~------~~~~~~~~-------------------~~~~l- 91 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLP----LQ------AAAGRLRD-------------------ALEAL- 91 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEe----HH------HhhhhHHH-------------------HHHHH-
Confidence 45999999999999999999987766655666765 11 11111111 11112
Q ss_pred CCeEEEEEcCCCChH---HHH-HHhcCCCC-CCCCCEEEEEeCCh---------hhhhhcCCCceecCCCCChHHHHHHH
Q 001458 100 RKKVLLVIDDVVDVK---QLQ-SLAGNREW-FGSGSRIIITSRDE---------HLLKTHGVDEVYKPHGLNYDEALQLF 165 (1074)
Q Consensus 100 ~kr~LlVLDdv~~~~---~l~-~l~~~~~~-~~~gs~IiiTTR~~---------~v~~~~~~~~~~~l~~L~~~ea~~Lf 165 (1074)
.+.-+|||||++... +++ .+...... ...|..||+|++.. .+...+.....+++++++.++-.+++
T Consensus 92 ~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL 171 (233)
T PRK08727 92 EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVL 171 (233)
T ss_pred hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHH
Confidence 123489999997442 222 22211110 13567799999852 22223333558899999999999999
Q ss_pred HHhhhcCCCCChhHHHHHHHHHHHhCCCchH
Q 001458 166 NMKAFKTYQPLQECVQLSARIIRYAGGLPLA 196 (1074)
Q Consensus 166 ~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLa 196 (1074)
.+++....-. -..+...-+++.+.|-.-+
T Consensus 172 ~~~a~~~~l~--l~~e~~~~La~~~~rd~r~ 200 (233)
T PRK08727 172 RERAQRRGLA--LDEAAIDWLLTHGERELAG 200 (233)
T ss_pred HHHHHHcCCC--CCHHHHHHHHHhCCCCHHH
Confidence 9877543211 1224455666666654433
No 64
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.17 E-value=2.6e-05 Score=82.56 Aligned_cols=134 Identities=19% Similarity=0.290 Sum_probs=85.1
Q ss_pred HHHhhcCCCCCeEEEEEEccCCCcHHHHHHHHHHHhcccccceEEEeechhhhccCChHHHHHHHHHHHhcccCCccccc
Q 001458 8 LRFLMDSGSSDVRMIGICGMGGLGKTTIARVVYDLISHEFEASGFLDNVREISSKGGLVSLQRQLLSQLLKLADNSIWNV 87 (1074)
Q Consensus 8 l~~lL~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~ll~~l~~~~~~~~~~~ 87 (1074)
|.+++. ++...-+.+||++|+||||||+.++..-+.+= ..|+. .|....-..-.++++++-
T Consensus 153 lrs~ie--q~~ipSmIlWGppG~GKTtlArlia~tsk~~S--yrfve----lSAt~a~t~dvR~ife~a----------- 213 (554)
T KOG2028|consen 153 LRSLIE--QNRIPSMILWGPPGTGKTTLARLIASTSKKHS--YRFVE----LSATNAKTNDVRDIFEQA----------- 213 (554)
T ss_pred HHHHHH--cCCCCceEEecCCCCchHHHHHHHHhhcCCCc--eEEEE----EeccccchHHHHHHHHHH-----------
Confidence 444443 45677789999999999999999998554431 34554 333322222334444441
Q ss_pred cchHHHHHhhhCCCeEEEEEcCCCC--hHHHHHHhcCCCCCCCCCEEEE--EeCChhh---hhhcCCCceecCCCCChHH
Q 001458 88 FDGIDMLGSRLQRKKVLLVIDDVVD--VKQLQSLAGNREWFGSGSRIII--TSRDEHL---LKTHGVDEVYKPHGLNYDE 160 (1074)
Q Consensus 88 ~~~~~~i~~~L~~kr~LlVLDdv~~--~~~l~~l~~~~~~~~~gs~Iii--TTR~~~v---~~~~~~~~~~~l~~L~~~e 160 (1074)
.-...+.+||.+|++|.|.. ..|-+.+++.. ..|+.++| ||.+... ........++.++.|+.++
T Consensus 214 -----q~~~~l~krkTilFiDEiHRFNksQQD~fLP~V---E~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~ 285 (554)
T KOG2028|consen 214 -----QNEKSLTKRKTILFIDEIHRFNKSQQDTFLPHV---ENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNA 285 (554)
T ss_pred -----HHHHhhhcceeEEEeHHhhhhhhhhhhccccee---ccCceEEEecccCCCccchhHHHHhccceeEeccCCHHH
Confidence 11234567899999999964 44566666553 47887776 4554321 1222345688999999999
Q ss_pred HHHHHHHh
Q 001458 161 ALQLFNMK 168 (1074)
Q Consensus 161 a~~Lf~~~ 168 (1074)
-..++.+.
T Consensus 286 v~~iL~ra 293 (554)
T KOG2028|consen 286 VVTILMRA 293 (554)
T ss_pred HHHHHHHH
Confidence 98888873
No 65
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.16 E-value=1.5e-07 Score=101.18 Aligned_cols=262 Identities=21% Similarity=0.255 Sum_probs=173.4
Q ss_pred cccCCCCCcEEeccCCCCCCc--CchhhhcCCCccEEEccC-cCCccC--chhhhcCCCCCEEeccCCCCCcc--ccccc
Q 001458 515 TISGLKCLSTLDVSGDLKFRE--FPEIVEHMEHLSELHLEG-TAIRGL--PLSIELLSGLVLLNLKNCRSLEI--LPVTV 587 (1074)
Q Consensus 515 ~l~~l~~L~~L~L~~~~~~~~--~~~~l~~l~~L~~L~L~~-~~i~~l--p~~~~~l~~L~~L~L~~~~~~~~--l~~~l 587 (1074)
....+++++.|.+.+|..+.. +...-..++.|++|++.. ..+++. ..-...+++|++|+++.|..... +....
T Consensus 159 ~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~ 238 (483)
T KOG4341|consen 159 FASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQ 238 (483)
T ss_pred HhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHh
Confidence 345677777777788865442 223445778899999988 555552 22345788999999999876544 22335
Q ss_pred cCCCCCCEEEecCCCCCCc--cchhhcCCCCCCEEEcCCC-cccccC--cchhccCCCCEeecCCCCCCcccc--chhcc
Q 001458 588 SNLKCLRSLKLSGCSKLKK--FPEIVRSMKDLSELFLDGT-SIKEVP--SSIELLTKLELLNLSDCKNLVRLP--SSIIA 660 (1074)
Q Consensus 588 ~~l~~L~~L~Ls~~~~~~~--~p~~~~~l~~L~~L~L~~~-~l~~lp--~~~~~l~~L~~L~L~~~~~l~~~~--~~~~~ 660 (1074)
.+++.|+.+.+.||...+. +-..-..+..+..+++..| .++... ..-..+..|+.|..++|......+ .-..+
T Consensus 239 rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~ 318 (483)
T KOG4341|consen 239 RGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQH 318 (483)
T ss_pred ccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcC
Confidence 5777788888888865432 2222234555667776666 333221 122457789999999998755433 23456
Q ss_pred cCCCCEEEccCCcCCCcCcc--cccCCCCccEEEcCCCCCCCCCCcccccccccccccccccCCC-CCCCCCccEEecCC
Q 001458 661 LKSLKTLNLSGCFKLENVPE--TLGQIESLEELDISGTAVPHSTSWYSYIPINLMRKSVALKLPS-LSGLCSLRKLNLTD 737 (1074)
Q Consensus 661 l~~L~~L~L~~c~~l~~~p~--~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~~~~~~~~~l~~-l~~l~~L~~L~Ls~ 737 (1074)
.++|+.|.+++|+..+..-- .-.+.+.|+.+++.++....... +.+ -.+++.|+.|.++.
T Consensus 319 ~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~t-----------------L~sls~~C~~lr~lslsh 381 (483)
T KOG4341|consen 319 CHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGT-----------------LASLSRNCPRLRVLSLSH 381 (483)
T ss_pred CCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhh-----------------HhhhccCCchhccCChhh
Confidence 78999999999987655431 12567789999988875533221 111 35788999999999
Q ss_pred CCCCCCCC----ccccCCCCCCCeEecCCCcCc--ccCccccccCCCCEeeccCCcCCCcCC
Q 001458 738 CNLMEGAL----PSDIGNLCSLKELYLSKNSFV--SLPTSITHLSKLLNIELEDCKRLQSLP 793 (1074)
Q Consensus 738 ~~~~~~~~----p~~l~~l~~L~~L~Ls~n~l~--~lp~~i~~l~~L~~L~L~~c~~L~~lp 793 (1074)
|...++.- ...-..+..|+.|.|+++..+ ..-+.+..+++|+.+++-+|.....-+
T Consensus 382 ce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~ 443 (483)
T KOG4341|consen 382 CELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEA 443 (483)
T ss_pred hhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhh
Confidence 98765431 122245678999999999765 334456788999999999997665443
No 66
>PLN03150 hypothetical protein; Provisional
Probab=98.15 E-value=4.2e-06 Score=101.85 Aligned_cols=108 Identities=28% Similarity=0.324 Sum_probs=76.3
Q ss_pred CCEEeccCCCCCccccccccCCCCCCEEEecCCCCCCccchhhcCCCCCCEEEcCCCccc-ccCcchhccCCCCEeecCC
Q 001458 569 LVLLNLKNCRSLEILPVTVSNLKCLRSLKLSGCSKLKKFPEIVRSMKDLSELFLDGTSIK-EVPSSIELLTKLELLNLSD 647 (1074)
Q Consensus 569 L~~L~L~~~~~~~~l~~~l~~l~~L~~L~Ls~~~~~~~~p~~~~~l~~L~~L~L~~~~l~-~lp~~~~~l~~L~~L~L~~ 647 (1074)
++.|+|++|.....+|..++.+++|+.|+|++|.....+|..+..+++|+.|+|++|.+. .+|..++.+++|+.|+|++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 566777777777777777777777777777777776777777777777777777777776 5677777777777777777
Q ss_pred CCCCccccchhccc-CCCCEEEccCCcCCC
Q 001458 648 CKNLVRLPSSIIAL-KSLKTLNLSGCFKLE 676 (1074)
Q Consensus 648 ~~~l~~~~~~~~~l-~~L~~L~L~~c~~l~ 676 (1074)
|.....+|..+... .++..+++.+|..+.
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc 529 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNAGLC 529 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCcccc
Confidence 77766777666543 356667777665443
No 67
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.13 E-value=4.3e-07 Score=105.57 Aligned_cols=195 Identities=28% Similarity=0.352 Sum_probs=97.9
Q ss_pred hhcCCCccEEEccCcCCccCchhhhcCCCCCEEeccCCCCCccccccccCCCCCCEEEecCCCCCCccchhhcCCCCCCE
Q 001458 540 VEHMEHLSELHLEGTAIRGLPLSIELLSGLVLLNLKNCRSLEILPVTVSNLKCLRSLKLSGCSKLKKFPEIVRSMKDLSE 619 (1074)
Q Consensus 540 l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~Ls~~~~~~~~p~~~~~l~~L~~ 619 (1074)
+..+++|+.|++.+|.|..+...+..+++|++|++++|.+...-+ +..++.|+.|++++
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~------------------- 149 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSG------------------- 149 (414)
T ss_pred cccccceeeeeccccchhhcccchhhhhcchheeccccccccccc--hhhccchhhheecc-------------------
Confidence 455666666666666666655445555555555555555443332 33333344444444
Q ss_pred EEcCCCcccccCcchhccCCCCEeecCCCCCCcccc-chhcccCCCCEEEccCCcCCCcCcccccCCCCccEEEcCCCCC
Q 001458 620 LFLDGTSIKEVPSSIELLTKLELLNLSDCKNLVRLP-SSIIALKSLKTLNLSGCFKLENVPETLGQIESLEELDISGTAV 698 (1074)
Q Consensus 620 L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~~l~~~~-~~~~~l~~L~~L~L~~c~~l~~~p~~l~~l~~L~~L~L~~n~i 698 (1074)
|.|..+.. +..+++|+.+++++|.....-+ . ...+.+|+.+.+.+|..... +.+..+..+..+++..|.+
T Consensus 150 -----N~i~~~~~-~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i 220 (414)
T KOG0531|consen 150 -----NLISDISG-LESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNKI 220 (414)
T ss_pred -----CcchhccC-CccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc--cchHHHHHHHHhhcccccc
Confidence 44443322 2224444444554444332222 1 23445555555555533221 1222333333445555555
Q ss_pred CCCCCcccccccccccccccccCCCCCCCC--CccEEecCCCCCCCCCCccccCCCCCCCeEecCCCcCcccCccccccC
Q 001458 699 PHSTSWYSYIPINLMRKSVALKLPSLSGLC--SLRKLNLTDCNLMEGALPSDIGNLCSLKELYLSKNSFVSLPTSITHLS 776 (1074)
Q Consensus 699 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~--~L~~L~Ls~~~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~i~~l~ 776 (1074)
....+ +..+. +|+.++++++++.. .+..+..+..+..|++.+|.+..+. .+...+
T Consensus 221 ~~~~~--------------------l~~~~~~~L~~l~l~~n~i~~--~~~~~~~~~~l~~l~~~~n~~~~~~-~~~~~~ 277 (414)
T KOG0531|consen 221 SKLEG--------------------LNELVMLHLRELYLSGNRISR--SPEGLENLKNLPVLDLSSNRISNLE-GLERLP 277 (414)
T ss_pred eeccC--------------------cccchhHHHHHHhcccCcccc--ccccccccccccccchhhccccccc-cccccc
Confidence 43211 12222 37777777777743 3355666777778888777766543 344555
Q ss_pred CCCEeeccCCc
Q 001458 777 KLLNIELEDCK 787 (1074)
Q Consensus 777 ~L~~L~L~~c~ 787 (1074)
.+..+...+++
T Consensus 278 ~~~~~~~~~~~ 288 (414)
T KOG0531|consen 278 KLSELWLNDNK 288 (414)
T ss_pred hHHHhccCcch
Confidence 55555555554
No 68
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.12 E-value=1.8e-05 Score=92.69 Aligned_cols=178 Identities=16% Similarity=0.093 Sum_probs=99.3
Q ss_pred HHHHHHhhcCCCCCeEEEEEEccCCCcHHHHHHHHHHHhc--ccccceEEEeech-hhhcc--CChHHHHHHHHHHHhcc
Q 001458 5 CEKLRFLMDSGSSDVRMIGICGMGGLGKTTIARVVYDLIS--HEFEASGFLDNVR-EISSK--GGLVSLQRQLLSQLLKL 79 (1074)
Q Consensus 5 ~~~l~~lL~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~--~~F~~~~~~~~~~-~~s~~--~~~~~l~~~ll~~l~~~ 79 (1074)
++.|...+..+ .-.+.+.++|+.|+||||+|+.+++.+. +.+...|+.+... .+... .++..+ ..
T Consensus 23 ~~~L~~~i~~~-~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~dv~el---------~~ 92 (504)
T PRK14963 23 KEVLLAALRQG-RLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPDVLEI---------DA 92 (504)
T ss_pred HHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCceEEe---------cc
Confidence 44556666532 2356789999999999999999998763 2233344433111 00000 000000 00
Q ss_pred cCCccccccchHHHHHhh-----hCCCeEEEEEcCCCChH--HHHHHhcCCCCCCCCCEEEEEeCC-hhhhhhc-CCCce
Q 001458 80 ADNSIWNVFDGIDMLGSR-----LQRKKVLLVIDDVVDVK--QLQSLAGNREWFGSGSRIIITSRD-EHLLKTH-GVDEV 150 (1074)
Q Consensus 80 ~~~~~~~~~~~~~~i~~~-----L~~kr~LlVLDdv~~~~--~l~~l~~~~~~~~~gs~IiiTTR~-~~v~~~~-~~~~~ 150 (1074)
. ..... +.+..+.+. ..+++-++|+|+++... .++.+...+....+...+|++|.. +.+.... .....
T Consensus 93 ~--~~~~v-d~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~SRc~~ 169 (504)
T PRK14963 93 A--SNNSV-EDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSRTQH 169 (504)
T ss_pred c--ccCCH-HHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhcceEE
Confidence 0 00001 111112221 22456689999998653 466665554433455566666544 3333322 23458
Q ss_pred ecCCCCChHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCCchHH
Q 001458 151 YKPHGLNYDEALQLFNMKAFKTYQPLQECVQLSARIIRYAGGLPLAL 197 (1074)
Q Consensus 151 ~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal 197 (1074)
+++.+++.++..+.+.+.+-+..... ..+....|++.++|.+--+
T Consensus 170 ~~f~~ls~~el~~~L~~i~~~egi~i--~~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 170 FRFRRLTEEEIAGKLRRLLEAEGREA--EPEALQLVARLADGAMRDA 214 (504)
T ss_pred EEecCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHH
Confidence 99999999999999988775433221 2345778999999988543
No 69
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.12 E-value=6.9e-05 Score=76.87 Aligned_cols=160 Identities=18% Similarity=0.173 Sum_probs=94.0
Q ss_pred HHHHhhcCCCCCeEEEEEEccCCCcHHHHHHHHHHHhccc---------------------ccceEEEeechhhhccCCh
Q 001458 7 KLRFLMDSGSSDVRMIGICGMGGLGKTTIARVVYDLISHE---------------------FEASGFLDNVREISSKGGL 65 (1074)
Q Consensus 7 ~l~~lL~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~---------------------F~~~~~~~~~~~~s~~~~~ 65 (1074)
.+...+..+ .-.+.+.++|+.|+||||+|+.+.+.+... +....++.. .....+.
T Consensus 3 ~l~~~i~~~-~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~---~~~~~~~ 78 (188)
T TIGR00678 3 QLKRALEKG-RLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEP---EGQSIKV 78 (188)
T ss_pred HHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEecc---ccCcCCH
Confidence 455556532 124778999999999999999999876431 111111110 0000111
Q ss_pred HHHHHHHHHHHhcccCCccccccchHHHHHhhhCCCeEEEEEcCCCChH--HHHHHhcCCCCCCCCCEEEEEeCCh-hhh
Q 001458 66 VSLQRQLLSQLLKLADNSIWNVFDGIDMLGSRLQRKKVLLVIDDVVDVK--QLQSLAGNREWFGSGSRIIITSRDE-HLL 142 (1074)
Q Consensus 66 ~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~~kr~LlVLDdv~~~~--~l~~l~~~~~~~~~gs~IiiTTR~~-~v~ 142 (1074)
+..++++..+. .....+.+-++|+|+++... ..+.+...+..-.+.+.+|++|++. .+.
T Consensus 79 -~~i~~i~~~~~-----------------~~~~~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~ 140 (188)
T TIGR00678 79 -DQVRELVEFLS-----------------RTPQESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLL 140 (188)
T ss_pred -HHHHHHHHHHc-----------------cCcccCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCh
Confidence 11111222110 00113456689999998754 3555655554445677788777653 332
Q ss_pred hhc-CCCceecCCCCChHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCCchH
Q 001458 143 KTH-GVDEVYKPHGLNYDEALQLFNMKAFKTYQPLQECVQLSARIIRYAGGLPLA 196 (1074)
Q Consensus 143 ~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLa 196 (1074)
... .....+++.+++.++..+.+.++. .. .+.+..+++.++|.|..
T Consensus 141 ~~i~sr~~~~~~~~~~~~~~~~~l~~~g-----i~---~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 141 PTIRSRCQVLPFPPLSEEALLQWLIRQG-----IS---EEAAELLLALAGGSPGA 187 (188)
T ss_pred HHHHhhcEEeeCCCCCHHHHHHHHHHcC-----CC---HHHHHHHHHHcCCCccc
Confidence 222 234589999999999998887761 11 35678999999998853
No 70
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.11 E-value=3.8e-07 Score=106.02 Aligned_cols=173 Identities=32% Similarity=0.359 Sum_probs=124.1
Q ss_pred ccCCCCCCEEEecCCCCCCccchhhcCCCCCCEEEcCCCcccccCcchhccCCCCEeecCCCCCCccccchhcccCCCCE
Q 001458 587 VSNLKCLRSLKLSGCSKLKKFPEIVRSMKDLSELFLDGTSIKEVPSSIELLTKLELLNLSDCKNLVRLPSSIIALKSLKT 666 (1074)
Q Consensus 587 l~~l~~L~~L~Ls~~~~~~~~p~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~~l~~~~~~~~~l~~L~~ 666 (1074)
+..+++|+.|++.+|..... ...+..+++|+.|++++|.|+.+.. +..++.|+.|++++|.+... ..+..+++|+.
T Consensus 91 l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i~~-l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~ 166 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKLEG-LSTLTLLKELNLSGNLISDI--SGLESLKSLKL 166 (414)
T ss_pred cccccceeeeeccccchhhc-ccchhhhhcchheeccccccccccc-hhhccchhhheeccCcchhc--cCCccchhhhc
Confidence 44555556666655543322 2225668899999999999988854 67788899999999986543 33445899999
Q ss_pred EEccCCcCCCcCc-ccccCCCCccEEEcCCCCCCCCCCcccccccccccccccccCCCCCCCCCccEEecCCCCCCCCCC
Q 001458 667 LNLSGCFKLENVP-ETLGQIESLEELDISGTAVPHSTSWYSYIPINLMRKSVALKLPSLSGLCSLRKLNLTDCNLMEGAL 745 (1074)
Q Consensus 667 L~L~~c~~l~~~p-~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~~~~~~~ 745 (1074)
+++++|.....-+ . +..+.+|+.+++.+|.+..... +..+..+..+++.+|.+..
T Consensus 167 l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~~--------------------~~~~~~l~~~~l~~n~i~~--- 222 (414)
T KOG0531|consen 167 LDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIEG--------------------LDLLKKLVLLSLLDNKISK--- 222 (414)
T ss_pred ccCCcchhhhhhhhh-hhhccchHHHhccCCchhcccc--------------------hHHHHHHHHhhccccccee---
Confidence 9999997665444 3 5788999999999998866432 2333445555777777743
Q ss_pred ccccCCCCC--CCeEecCCCcCcccCccccccCCCCEeeccCCc
Q 001458 746 PSDIGNLCS--LKELYLSKNSFVSLPTSITHLSKLLNIELEDCK 787 (1074)
Q Consensus 746 p~~l~~l~~--L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~ 787 (1074)
-..+..+.. |+.+++++|.+..++..+..+..+..|++.+++
T Consensus 223 ~~~l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~ 266 (414)
T KOG0531|consen 223 LEGLNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNR 266 (414)
T ss_pred ccCcccchhHHHHHHhcccCccccccccccccccccccchhhcc
Confidence 122333444 899999999999988888999999999998774
No 71
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.09 E-value=1.3e-07 Score=107.72 Aligned_cols=130 Identities=29% Similarity=0.304 Sum_probs=96.3
Q ss_pred CCCEEEcCCCcccccCcchhccCCCCEeecCCCCCCccccchhcccCCCCEEEccCCcCCCcCccc-ccCCCCccEEEcC
Q 001458 616 DLSELFLDGTSIKEVPSSIELLTKLELLNLSDCKNLVRLPSSIIALKSLKTLNLSGCFKLENVPET-LGQIESLEELDIS 694 (1074)
Q Consensus 616 ~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~L~~c~~l~~~p~~-l~~l~~L~~L~L~ 694 (1074)
.|.+.+.+.|.+..+..++.-++.|+.|+|+.|+....- .+..++.|++|+|+.|. +..+|.. ...+. |..|.++
T Consensus 165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~-L~~vp~l~~~gc~-L~~L~lr 240 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNC-LRHVPQLSMVGCK-LQLLNLR 240 (1096)
T ss_pred hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccch-hccccccchhhhh-heeeeec
Confidence 567777788888888888888899999999988755432 56778888888888884 3444432 23333 8888888
Q ss_pred CCCCCCCCCcccccccccccccccccCCCCCCCCCccEEecCCCCCCCCCCccccCCCCCCCeEecCCCcCcccC
Q 001458 695 GTAVPHSTSWYSYIPINLMRKSVALKLPSLSGLCSLRKLNLTDCNLMEGALPSDIGNLCSLKELYLSKNSFVSLP 769 (1074)
Q Consensus 695 ~n~i~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~lp 769 (1074)
+|.++. +..+.+|.+|+.||+++|-+.+..--..++.|.+|+.|+|.||.+-.-|
T Consensus 241 nN~l~t--------------------L~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p 295 (1096)
T KOG1859|consen 241 NNALTT--------------------LRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAP 295 (1096)
T ss_pred ccHHHh--------------------hhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCH
Confidence 887765 4456788899999999988766444455677888999999999776444
No 72
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.08 E-value=2.7e-07 Score=94.75 Aligned_cols=178 Identities=25% Similarity=0.238 Sum_probs=127.1
Q ss_pred CCccEEEccCcCCcc--CchhhhcCCCCCEEeccCCCCCccccccccCCCCCCEEEecCCCCCCcc--chhhcCCCCCCE
Q 001458 544 EHLSELHLEGTAIRG--LPLSIELLSGLVLLNLKNCRSLEILPVTVSNLKCLRSLKLSGCSKLKKF--PEIVRSMKDLSE 619 (1074)
Q Consensus 544 ~~L~~L~L~~~~i~~--lp~~~~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~Ls~~~~~~~~--p~~~~~l~~L~~ 619 (1074)
..|++|+|++..|+. +...+..+.+|+.|.|.++.....+-..+.+-.+|+.|+|+.|+..... .-.+.+++.|..
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 469999999998876 5555778899999999999888888888889999999999999876653 345778899999
Q ss_pred EEcCCCcccc--cCcch-hccCCCCEeecCCCCCCc---cccchhcccCCCCEEEccCCcCCCc-CcccccCCCCccEEE
Q 001458 620 LFLDGTSIKE--VPSSI-ELLTKLELLNLSDCKNLV---RLPSSIIALKSLKTLNLSGCFKLEN-VPETLGQIESLEELD 692 (1074)
Q Consensus 620 L~L~~~~l~~--lp~~~-~~l~~L~~L~L~~~~~l~---~~~~~~~~l~~L~~L~L~~c~~l~~-~p~~l~~l~~L~~L~ 692 (1074)
|+++.|.+.. +...+ .--++|+.|+|++|...- .+..-...+|+|.+|+|++|..+.. ....+-.++.|++|.
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lS 344 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLS 344 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeee
Confidence 9999986542 11111 123678889999885321 1222234688999999999876654 334567788888888
Q ss_pred cCCCCCCCCCCcccccccccccccccccCCCCCCCCCccEEecCCC
Q 001458 693 ISGTAVPHSTSWYSYIPINLMRKSVALKLPSLSGLCSLRKLNLTDC 738 (1074)
Q Consensus 693 L~~n~i~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~ 738 (1074)
++.|..-... .+-.+...|+|.+|++.+|
T Consensus 345 lsRCY~i~p~-----------------~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 345 LSRCYDIIPE-----------------TLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hhhhcCCChH-----------------HeeeeccCcceEEEEeccc
Confidence 8887532100 1223566777777777765
No 73
>PRK09087 hypothetical protein; Validated
Probab=98.08 E-value=4.4e-05 Score=80.22 Aligned_cols=137 Identities=13% Similarity=0.046 Sum_probs=82.6
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhcccccceEEEeechhhhccCChHHHHHHHHHHHhcccCCccccccchHHHHHhhh
Q 001458 19 VRMIGICGMGGLGKTTIARVVYDLISHEFEASGFLDNVREISSKGGLVSLQRQLLSQLLKLADNSIWNVFDGIDMLGSRL 98 (1074)
Q Consensus 19 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L 98 (1074)
.+.+.|||..|+|||+|++++++... ..|+.. ..+..+++..+
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~-----~~~i~~----------~~~~~~~~~~~---------------------- 86 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSD-----ALLIHP----------NEIGSDAANAA---------------------- 86 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcC-----CEEecH----------HHcchHHHHhh----------------------
Confidence 35689999999999999999887532 224431 01111111111
Q ss_pred CCCeEEEEEcCCCCh----HHHHHHhcCCCCCCCCCEEEEEeCC---------hhhhhhcCCCceecCCCCChHHHHHHH
Q 001458 99 QRKKVLLVIDDVVDV----KQLQSLAGNREWFGSGSRIIITSRD---------EHLLKTHGVDEVYKPHGLNYDEALQLF 165 (1074)
Q Consensus 99 ~~kr~LlVLDdv~~~----~~l~~l~~~~~~~~~gs~IiiTTR~---------~~v~~~~~~~~~~~l~~L~~~ea~~Lf 165 (1074)
.+ -+|++||++.. +.+-.+.... ...|..||+|++. +.+...+.....++++++++++-.+++
T Consensus 87 ~~--~~l~iDDi~~~~~~~~~lf~l~n~~--~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL 162 (226)
T PRK09087 87 AE--GPVLIEDIDAGGFDETGLFHLINSV--RQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVI 162 (226)
T ss_pred hc--CeEEEECCCCCCCCHHHHHHHHHHH--HhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHH
Confidence 11 27888999643 2222222111 1357789999874 234444455678999999999999999
Q ss_pred HHhhhcCCCCChhHHHHHHHHHHHhCCCchHHH
Q 001458 166 NMKAFKTYQPLQECVQLSARIIRYAGGLPLALE 198 (1074)
Q Consensus 166 ~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~ 198 (1074)
.+++-...-. --+++..-|++.+.|..-++.
T Consensus 163 ~~~~~~~~~~--l~~ev~~~La~~~~r~~~~l~ 193 (226)
T PRK09087 163 FKLFADRQLY--VDPHVVYYLVSRMERSLFAAQ 193 (226)
T ss_pred HHHHHHcCCC--CCHHHHHHHHHHhhhhHHHHH
Confidence 9887432211 123455666676666665554
No 74
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.08 E-value=0.00015 Score=82.36 Aligned_cols=179 Identities=15% Similarity=0.103 Sum_probs=96.3
Q ss_pred HHHHHHhhcCCCCCeEEEEEEccCCCcHHHHHHHHHHHhcccccceEEEeechhhhccCChHHHHHHHHHH----Hhccc
Q 001458 5 CEKLRFLMDSGSSDVRMIGICGMGGLGKTTIARVVYDLISHEFEASGFLDNVREISSKGGLVSLQRQLLSQ----LLKLA 80 (1074)
Q Consensus 5 ~~~l~~lL~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~ll~~----l~~~~ 80 (1074)
++.+...+..+ .-.+.+.++|+.|+||||+|+.+++.+........ ...+.-....++... +....
T Consensus 25 ~~~l~~~~~~~-~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~---------~pc~~c~~c~~~~~~~~~d~~~~~ 94 (363)
T PRK14961 25 VTAISNGLSLG-RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITS---------NPCRKCIICKEIEKGLCLDLIEID 94 (363)
T ss_pred HHHHHHHHHcC-CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCC---------CCCCCCHHHHHHhcCCCCceEEec
Confidence 44555555532 23577899999999999999999987642111000 000000000000000 00000
Q ss_pred CCccccccchHHHHHhhh-----CCCeEEEEEcCCCChH--HHHHHhcCCCCCCCCCEEEEEeCCh-hhhhh-cCCCcee
Q 001458 81 DNSIWNVFDGIDMLGSRL-----QRKKVLLVIDDVVDVK--QLQSLAGNREWFGSGSRIIITSRDE-HLLKT-HGVDEVY 151 (1074)
Q Consensus 81 ~~~~~~~~~~~~~i~~~L-----~~kr~LlVLDdv~~~~--~l~~l~~~~~~~~~gs~IiiTTR~~-~v~~~-~~~~~~~ 151 (1074)
......++ .+..+.+.+ .+++-++|+|+++... .++.+........+..++|++|.+. .+... .+....+
T Consensus 95 ~~~~~~v~-~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~tI~SRc~~~ 173 (363)
T PRK14961 95 AASRTKVE-EMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKTILSRCLQF 173 (363)
T ss_pred ccccCCHH-HHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhHHHHhhceEE
Confidence 00000000 011111111 2455689999998775 3556665544445667777777653 33332 2234689
Q ss_pred cCCCCChHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCCchH
Q 001458 152 KPHGLNYDEALQLFNMKAFKTYQPLQECVQLSARIIRYAGGLPLA 196 (1074)
Q Consensus 152 ~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLa 196 (1074)
++++++.++..+.+...+-...... ..+.+..|++.++|.|-.
T Consensus 174 ~~~~l~~~el~~~L~~~~~~~g~~i--~~~al~~ia~~s~G~~R~ 216 (363)
T PRK14961 174 KLKIISEEKIFNFLKYILIKESIDT--DEYALKLIAYHAHGSMRD 216 (363)
T ss_pred eCCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHH
Confidence 9999999999998887664432111 224567788899998854
No 75
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.07 E-value=5.5e-05 Score=85.81 Aligned_cols=188 Identities=18% Similarity=0.116 Sum_probs=94.8
Q ss_pred hHHHHHHHhhcCCCCCeEEEEEEccCCCcHHHHHHHHHHHhcccc-cc-eEEEeechhhhccCChHHHHH--HHHHHHhc
Q 001458 3 SRCEKLRFLMDSGSSDVRMIGICGMGGLGKTTIARVVYDLISHEF-EA-SGFLDNVREISSKGGLVSLQR--QLLSQLLK 78 (1074)
Q Consensus 3 ~~~~~l~~lL~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F-~~-~~~~~~~~~~s~~~~~~~l~~--~ll~~l~~ 78 (1074)
..++++..++.. +..+.+.++|+.|+||||+|+++++.+...- .. .+++. +...... ....+.. .....+..
T Consensus 22 ~~~~~L~~~~~~--~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~-~~~~~~~-~~~~~~~~~~~~~~~~~ 97 (337)
T PRK12402 22 EVVERLSRAVDS--PNLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFN-VADFFDQ-GKKYLVEDPRFAHFLGT 97 (337)
T ss_pred HHHHHHHHHHhC--CCCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEec-hhhhhhc-chhhhhcCcchhhhhhh
Confidence 345666666653 3344578999999999999999998764332 22 23332 2111100 0000000 00000000
Q ss_pred ccCCccccccchHHHH-Hh---h--hCCCeEEEEEcCCCChH--HHHHHhcCCCCCCCCCEEEEEeCC-hhhhhhc-CCC
Q 001458 79 LADNSIWNVFDGIDML-GS---R--LQRKKVLLVIDDVVDVK--QLQSLAGNREWFGSGSRIIITSRD-EHLLKTH-GVD 148 (1074)
Q Consensus 79 ~~~~~~~~~~~~~~~i-~~---~--L~~kr~LlVLDdv~~~~--~l~~l~~~~~~~~~gs~IiiTTR~-~~v~~~~-~~~ 148 (1074)
...... ...+....+ +. . +...+-+||+||++... ..+.+........+..++|+||.. ..+.... ...
T Consensus 98 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~~~~~L~sr~ 176 (337)
T PRK12402 98 DKRIRS-SKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKLIPPIRSRC 176 (337)
T ss_pred hhhhcc-chHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhhCchhhcCCc
Confidence 000000 000111111 11 1 11334589999998653 233333322223456778887754 2222222 223
Q ss_pred ceecCCCCChHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCCchHH
Q 001458 149 EVYKPHGLNYDEALQLFNMKAFKTYQPLQECVQLSARIIRYAGGLPLAL 197 (1074)
Q Consensus 149 ~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal 197 (1074)
..+++.+++.++..+++...+-..... -..+....++++++|.+-.+
T Consensus 177 ~~v~~~~~~~~~~~~~l~~~~~~~~~~--~~~~al~~l~~~~~gdlr~l 223 (337)
T PRK12402 177 LPLFFRAPTDDELVDVLESIAEAEGVD--YDDDGLELIAYYAGGDLRKA 223 (337)
T ss_pred eEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHH
Confidence 568889999999999988866433221 12356777888888876544
No 76
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.07 E-value=5e-05 Score=80.60 Aligned_cols=148 Identities=16% Similarity=0.184 Sum_probs=85.6
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhcccccceEEEeechhhhccCChHHHHHHHHHHHhcccCCccccccchHHHHHhhh
Q 001458 19 VRMIGICGMGGLGKTTIARVVYDLISHEFEASGFLDNVREISSKGGLVSLQRQLLSQLLKLADNSIWNVFDGIDMLGSRL 98 (1074)
Q Consensus 19 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L 98 (1074)
.+.+.|+|+.|+|||+||+++++....+-..+.|+. ..... ... ..+.+.+
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~----~~~~~---~~~----------------------~~~~~~~ 95 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVP----LDKRA---WFV----------------------PEVLEGM 95 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE----HHHHh---hhh----------------------HHHHHHh
Confidence 357899999999999999999987655444455654 11100 000 0111111
Q ss_pred CCCeEEEEEcCCCCh---HHHHHHh-cCCCC-CCCC-CEEEEEeCCh---------hhhhhcCCCceecCCCCChHHHHH
Q 001458 99 QRKKVLLVIDDVVDV---KQLQSLA-GNREW-FGSG-SRIIITSRDE---------HLLKTHGVDEVYKPHGLNYDEALQ 163 (1074)
Q Consensus 99 ~~kr~LlVLDdv~~~---~~l~~l~-~~~~~-~~~g-s~IiiTTR~~---------~v~~~~~~~~~~~l~~L~~~ea~~ 163 (1074)
.+ --+||+||++.. .+|+... ..+.. ...| .++|+||+.. .+...+....+++++++++++-.+
T Consensus 96 ~~-~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~ 174 (235)
T PRK08084 96 EQ-LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQ 174 (235)
T ss_pred hh-CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHH
Confidence 11 137899999754 2333221 11110 0133 4799998753 233334445689999999999999
Q ss_pred HHHHhhhcCCCCChhHHHHHHHHHHHhCCCchHHH
Q 001458 164 LFNMKAFKTYQPLQECVQLSARIIRYAGGLPLALE 198 (1074)
Q Consensus 164 Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~ 198 (1074)
++.++|....- .--+++..-+++.+.|..-++.
T Consensus 175 ~l~~~a~~~~~--~l~~~v~~~L~~~~~~d~r~l~ 207 (235)
T PRK08084 175 ALQLRARLRGF--ELPEDVGRFLLKRLDREMRTLF 207 (235)
T ss_pred HHHHHHHHcCC--CCCHHHHHHHHHhhcCCHHHHH
Confidence 99876643221 1123456667777776554443
No 77
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.05 E-value=0.00013 Score=86.74 Aligned_cols=170 Identities=18% Similarity=0.152 Sum_probs=98.0
Q ss_pred HHHHHHhhcCCCCCeEEEEEEccCCCcHHHHHHHHHHHhccc---------------------ccceEEEeechhhhccC
Q 001458 5 CEKLRFLMDSGSSDVRMIGICGMGGLGKTTIARVVYDLISHE---------------------FEASGFLDNVREISSKG 63 (1074)
Q Consensus 5 ~~~l~~lL~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~---------------------F~~~~~~~~~~~~s~~~ 63 (1074)
++.|...+..+ .-.+.+.++|..|+||||+|+.+.+.+... |...+.++ .+...
T Consensus 25 v~~L~~aL~~g-RL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~DviEID----Aas~r 99 (830)
T PRK07003 25 VRALTHALDGG-RLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDYVEMD----AASNR 99 (830)
T ss_pred HHHHHHHHhcC-CCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceEEEec----ccccc
Confidence 45666666533 225677899999999999999999865321 11111111 00011
Q ss_pred ChHHHHHHHHHHHhcccCCccccccchHHHHHhhhCCCeEEEEEcCCCChHH--HHHHhcCCCCCCCCCEEEEEeCChh-
Q 001458 64 GLVSLQRQLLSQLLKLADNSIWNVFDGIDMLGSRLQRKKVLLVIDDVVDVKQ--LQSLAGNREWFGSGSRIIITSRDEH- 140 (1074)
Q Consensus 64 ~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~~kr~LlVLDdv~~~~~--l~~l~~~~~~~~~gs~IiiTTR~~~- 140 (1074)
++.+ .+++++... ..-..++.-++|||+++.+.. ++.|+..+....+..++|+||++.+
T Consensus 100 gVDd-IReLIe~a~-----------------~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~K 161 (830)
T PRK07003 100 GVDE-MAALLERAV-----------------YAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQK 161 (830)
T ss_pred cHHH-HHHHHHHHH-----------------hccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhh
Confidence 1111 111111100 001123555888999987753 5666554433346788888888754
Q ss_pred hhhh-cCCCceecCCCCChHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCCc-hHHHH
Q 001458 141 LLKT-HGVDEVYKPHGLNYDEALQLFNMKAFKTYQPLQECVQLSARIIRYAGGLP-LALEV 199 (1074)
Q Consensus 141 v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlP-Lal~~ 199 (1074)
+... ......+.++.++.++..+.+.+.+-...-. -..+....|++.++|.. -|+..
T Consensus 162 Ip~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~--id~eAL~lIA~~A~GsmRdALsL 220 (830)
T PRK07003 162 IPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERIA--FEPQALRLLARAAQGSMRDALSL 220 (830)
T ss_pred ccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHH
Confidence 3322 2234689999999999999998876432211 12355678888998865 34444
No 78
>PLN03025 replication factor C subunit; Provisional
Probab=98.03 E-value=8.8e-05 Score=82.94 Aligned_cols=169 Identities=14% Similarity=0.145 Sum_probs=93.4
Q ss_pred HHHHHHhhcCCCCCeEEEEEEccCCCcHHHHHHHHHHHhc-ccccceEEEeechhhhccCChHHHHHHHHHHHhcccCCc
Q 001458 5 CEKLRFLMDSGSSDVRMIGICGMGGLGKTTIARVVYDLIS-HEFEASGFLDNVREISSKGGLVSLQRQLLSQLLKLADNS 83 (1074)
Q Consensus 5 ~~~l~~lL~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~-~~F~~~~~~~~~~~~s~~~~~~~l~~~ll~~l~~~~~~~ 83 (1074)
++.|..++.. ++.+-+.++|++|+||||+|+.+++.+. ..|...+.--+ .+...+... .++++........ .
T Consensus 22 ~~~L~~~~~~--~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln---~sd~~~~~~-vr~~i~~~~~~~~-~ 94 (319)
T PLN03025 22 VSRLQVIARD--GNMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELN---ASDDRGIDV-VRNKIKMFAQKKV-T 94 (319)
T ss_pred HHHHHHHHhc--CCCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeec---ccccccHHH-HHHHHHHHHhccc-c
Confidence 4556666553 2334467999999999999999998763 33332211110 122223222 2222222111000 0
Q ss_pred cccccchHHHHHhhhCCCeEEEEEcCCCChH--HHHHHhcCCCCCCCCCEEEEEeCCh-hhhhhc-CCCceecCCCCChH
Q 001458 84 IWNVFDGIDMLGSRLQRKKVLLVIDDVVDVK--QLQSLAGNREWFGSGSRIIITSRDE-HLLKTH-GVDEVYKPHGLNYD 159 (1074)
Q Consensus 84 ~~~~~~~~~~i~~~L~~kr~LlVLDdv~~~~--~l~~l~~~~~~~~~gs~IiiTTR~~-~v~~~~-~~~~~~~l~~L~~~ 159 (1074)
.-.++.-++|||+++... +-+.+.......++.+++|+++... .+.... .....+++++++++
T Consensus 95 -------------~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i~f~~l~~~ 161 (319)
T PLN03025 95 -------------LPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQ 161 (319)
T ss_pred -------------CCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhcccCCCCCHH
Confidence 002346689999998763 2333333333335667888777543 222211 12347899999999
Q ss_pred HHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCCch
Q 001458 160 EALQLFNMKAFKTYQPLQECVQLSARIIRYAGGLPL 195 (1074)
Q Consensus 160 ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPL 195 (1074)
+..+.+...+-.....-+ .+....+++.++|..-
T Consensus 162 ~l~~~L~~i~~~egi~i~--~~~l~~i~~~~~gDlR 195 (319)
T PLN03025 162 EILGRLMKVVEAEKVPYV--PEGLEAIIFTADGDMR 195 (319)
T ss_pred HHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCHH
Confidence 999988877744322111 2456788888888663
No 79
>PRK04195 replication factor C large subunit; Provisional
Probab=98.03 E-value=9.1e-05 Score=87.65 Aligned_cols=169 Identities=16% Similarity=0.138 Sum_probs=96.6
Q ss_pred hHHHHHHHhhcCCC--CCeEEEEEEccCCCcHHHHHHHHHHHhcccccceEEEeechhhhccCChHHHHHHHHHHHhccc
Q 001458 3 SRCEKLRFLMDSGS--SDVRMIGICGMGGLGKTTIARVVYDLISHEFEASGFLDNVREISSKGGLVSLQRQLLSQLLKLA 80 (1074)
Q Consensus 3 ~~~~~l~~lL~~~~--~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~ll~~l~~~~ 80 (1074)
..+++|..|+.... ...+.+.|+|++|+||||+|+++++.+. |+. +.+. .+.... .....+++......
T Consensus 21 ~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~--~~~-ieln----asd~r~-~~~i~~~i~~~~~~- 91 (482)
T PRK04195 21 KAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYG--WEV-IELN----ASDQRT-ADVIERVAGEAATS- 91 (482)
T ss_pred HHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcC--CCE-EEEc----cccccc-HHHHHHHHHHhhcc-
Confidence 44567777775421 2267899999999999999999999764 221 2222 121111 12222222221110
Q ss_pred CCccccccchHHHHHhhhCCCeEEEEEcCCCChH------HHHHHhcCCCCCCCCCEEEEEeCChh-hhh-h-cCCCcee
Q 001458 81 DNSIWNVFDGIDMLGSRLQRKKVLLVIDDVVDVK------QLQSLAGNREWFGSGSRIIITSRDEH-LLK-T-HGVDEVY 151 (1074)
Q Consensus 81 ~~~~~~~~~~~~~i~~~L~~kr~LlVLDdv~~~~------~l~~l~~~~~~~~~gs~IiiTTR~~~-v~~-~-~~~~~~~ 151 (1074)
......++-+||+|+++... .++.+..... ..+..||+|+.+.. ... . -.....+
T Consensus 92 --------------~sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~--~~~~~iIli~n~~~~~~~k~Lrsr~~~I 155 (482)
T PRK04195 92 --------------GSLFGARRKLILLDEVDGIHGNEDRGGARAILELIK--KAKQPIILTANDPYDPSLRELRNACLMI 155 (482)
T ss_pred --------------CcccCCCCeEEEEecCcccccccchhHHHHHHHHHH--cCCCCEEEeccCccccchhhHhccceEE
Confidence 00111367899999998753 2444433222 23455666665432 111 1 1234578
Q ss_pred cCCCCChHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCCchHHH
Q 001458 152 KPHGLNYDEALQLFNMKAFKTYQPLQECVQLSARIIRYAGGLPLALE 198 (1074)
Q Consensus 152 ~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~ 198 (1074)
++..++.++....+...+....... ..+....|++.++|..-.+.
T Consensus 156 ~f~~~~~~~i~~~L~~i~~~egi~i--~~eaL~~Ia~~s~GDlR~ai 200 (482)
T PRK04195 156 EFKRLSTRSIVPVLKRICRKEGIEC--DDEALKEIAERSGGDLRSAI 200 (482)
T ss_pred EecCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHH
Confidence 8999999999888887764432221 13567788889988765543
No 80
>PRK05642 DNA replication initiation factor; Validated
Probab=98.01 E-value=8.5e-05 Score=78.78 Aligned_cols=147 Identities=18% Similarity=0.209 Sum_probs=86.0
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHhcccccceEEEeechhhhccCChHHHHHHHHHHHhcccCCccccccchHHHHHhhhC
Q 001458 20 RMIGICGMGGLGKTTIARVVYDLISHEFEASGFLDNVREISSKGGLVSLQRQLLSQLLKLADNSIWNVFDGIDMLGSRLQ 99 (1074)
Q Consensus 20 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~ 99 (1074)
..+.|||..|+|||.||+++++.+..+-..++|+.. . ++.. . ...+.+.++
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~-~---------~~~~----~---------------~~~~~~~~~ 96 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPL-A---------ELLD----R---------------GPELLDNLE 96 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeH-H---------HHHh----h---------------hHHHHHhhh
Confidence 578999999999999999999876554455666651 1 1111 0 012223333
Q ss_pred CCeEEEEEcCCCCh---HHHHH-HhcCCCC-CCCCCEEEEEeCChh---------hhhhcCCCceecCCCCChHHHHHHH
Q 001458 100 RKKVLLVIDDVVDV---KQLQS-LAGNREW-FGSGSRIIITSRDEH---------LLKTHGVDEVYKPHGLNYDEALQLF 165 (1074)
Q Consensus 100 ~kr~LlVLDdv~~~---~~l~~-l~~~~~~-~~~gs~IiiTTR~~~---------v~~~~~~~~~~~l~~L~~~ea~~Lf 165 (1074)
+-. +||+||++.. .+|+. +....+. ...|.+||+|++... +...++....++++++++++-.+++
T Consensus 97 ~~d-~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il 175 (234)
T PRK05642 97 QYE-LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRAL 175 (234)
T ss_pred hCC-EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHH
Confidence 222 6788999633 23332 2222211 135678899887532 1122233457899999999999999
Q ss_pred HHhhhcCCCCChhHHHHHHHHHHHhCCCchHHH
Q 001458 166 NMKAFKTYQPLQECVQLSARIIRYAGGLPLALE 198 (1074)
Q Consensus 166 ~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~ 198 (1074)
..++....-.. -.++..-+++.+.|..-++.
T Consensus 176 ~~ka~~~~~~l--~~ev~~~L~~~~~~d~r~l~ 206 (234)
T PRK05642 176 QLRASRRGLHL--TDEVGHFILTRGTRSMSALF 206 (234)
T ss_pred HHHHHHcCCCC--CHHHHHHHHHhcCCCHHHHH
Confidence 87664432111 13555666666666554433
No 81
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.01 E-value=5.9e-05 Score=91.91 Aligned_cols=156 Identities=21% Similarity=0.292 Sum_probs=88.6
Q ss_pred HHHHhhcCCCCCeEEEEEEccCCCcHHHHHHHHHHHhcccccceEEEeechhhhccCChHHHHHHHHHHHhcccCCcccc
Q 001458 7 KLRFLMDSGSSDVRMIGICGMGGLGKTTIARVVYDLISHEFEASGFLDNVREISSKGGLVSLQRQLLSQLLKLADNSIWN 86 (1074)
Q Consensus 7 ~l~~lL~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~ll~~l~~~~~~~~~~ 86 (1074)
.+...+.. +....+.++|++|+||||+|+.+++.....|. .+.. . ..++.++ ++++.
T Consensus 42 ~L~~~i~~--~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~---~lna---~--~~~i~di-r~~i~------------ 98 (725)
T PRK13341 42 LLRRAIKA--DRVGSLILYGPPGVGKTTLARIIANHTRAHFS---SLNA---V--LAGVKDL-RAEVD------------ 98 (725)
T ss_pred HHHHHHhc--CCCceEEEECCCCCCHHHHHHHHHHHhcCcce---eehh---h--hhhhHHH-HHHHH------------
Confidence 34555542 34556789999999999999999997765552 1211 0 1111111 11111
Q ss_pred ccchHHHHHhhh--CCCeEEEEEcCCCCh--HHHHHHhcCCCCCCCCCEEEEEe--CChh--hhhh-cCCCceecCCCCC
Q 001458 87 VFDGIDMLGSRL--QRKKVLLVIDDVVDV--KQLQSLAGNREWFGSGSRIIITS--RDEH--LLKT-HGVDEVYKPHGLN 157 (1074)
Q Consensus 87 ~~~~~~~i~~~L--~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~gs~IiiTT--R~~~--v~~~-~~~~~~~~l~~L~ 157 (1074)
...+.+ .+++.+|||||++.. .+.+.+.... ..|+.++|++ .+.. +... ......+.+++++
T Consensus 99 ------~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~l---E~g~IiLI~aTTenp~~~l~~aL~SR~~v~~l~pLs 169 (725)
T PRK13341 99 ------RAKERLERHGKRTILFIDEVHRFNKAQQDALLPWV---ENGTITLIGATTENPYFEVNKALVSRSRLFRLKSLS 169 (725)
T ss_pred ------HHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHh---cCceEEEEEecCCChHhhhhhHhhccccceecCCCC
Confidence 111111 246789999999754 4566666543 3466666643 3321 2111 1124578999999
Q ss_pred hHHHHHHHHHhhhcC-----CCCChhHHHHHHHHHHHhCCCc
Q 001458 158 YDEALQLFNMKAFKT-----YQPLQECVQLSARIIRYAGGLP 194 (1074)
Q Consensus 158 ~~ea~~Lf~~~a~~~-----~~~~~~~~~~~~~i~~~~~GlP 194 (1074)
.++...++.+.+-.. .....-..+....|++++.|.-
T Consensus 170 ~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~ 211 (725)
T PRK13341 170 DEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDA 211 (725)
T ss_pred HHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCH
Confidence 999999998765310 1111112345677788888764
No 82
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.99 E-value=2.5e-06 Score=87.75 Aligned_cols=88 Identities=24% Similarity=0.293 Sum_probs=46.4
Q ss_pred hcCCCccEEEccCcCCccCc---hhhhcCCCCCEEeccCCCCCccccccccCCCCCCEEEecCCCCC-CccchhhcCCCC
Q 001458 541 EHMEHLSELHLEGTAIRGLP---LSIELLSGLVLLNLKNCRSLEILPVTVSNLKCLRSLKLSGCSKL-KKFPEIVRSMKD 616 (1074)
Q Consensus 541 ~~l~~L~~L~L~~~~i~~lp---~~~~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~Ls~~~~~-~~~p~~~~~l~~ 616 (1074)
...+.++.|+|.+|.|.+.. ..+.+++.|+.|+|+.|.....+..--..+.+|+.|.|.|.... ......+..+|.
T Consensus 68 ~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~ 147 (418)
T KOG2982|consen 68 SSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPK 147 (418)
T ss_pred HHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchh
Confidence 45567777777777776633 33456666666666666544332211134456666666554321 122233444555
Q ss_pred CCEEEcCCCccc
Q 001458 617 LSELFLDGTSIK 628 (1074)
Q Consensus 617 L~~L~L~~~~l~ 628 (1074)
+++|.++.|++.
T Consensus 148 vtelHmS~N~~r 159 (418)
T KOG2982|consen 148 VTELHMSDNSLR 159 (418)
T ss_pred hhhhhhccchhh
Confidence 555555555433
No 83
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.97 E-value=0.00011 Score=77.04 Aligned_cols=154 Identities=19% Similarity=0.173 Sum_probs=87.0
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHHHhccccc--ceEEEeechhhhccCChHHHHHHHHHHHhcccCCccccccchHHHHH
Q 001458 18 DVRMIGICGMGGLGKTTIARVVYDLISHEFE--ASGFLDNVREISSKGGLVSLQRQLLSQLLKLADNSIWNVFDGIDMLG 95 (1074)
Q Consensus 18 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~--~~~~~~~~~~~s~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~ 95 (1074)
....+.|||..|+|||.|.+++++.+..... .++|+. ..+..+.+...+-. .....++
T Consensus 33 ~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~----------~~~f~~~~~~~~~~----------~~~~~~~ 92 (219)
T PF00308_consen 33 RYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS----------AEEFIREFADALRD----------GEIEEFK 92 (219)
T ss_dssp SSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE----------HHHHHHHHHHHHHT----------TSHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeec----------HHHHHHHHHHHHHc----------ccchhhh
Confidence 3445789999999999999999998765433 344553 22344444444321 1235566
Q ss_pred hhhCCCeEEEEEcCCCChHH---HH-HHhcCCC-CCCCCCEEEEEeCCh---------hhhhhcCCCceecCCCCChHHH
Q 001458 96 SRLQRKKVLLVIDDVVDVKQ---LQ-SLAGNRE-WFGSGSRIIITSRDE---------HLLKTHGVDEVYKPHGLNYDEA 161 (1074)
Q Consensus 96 ~~L~~kr~LlVLDdv~~~~~---l~-~l~~~~~-~~~~gs~IiiTTR~~---------~v~~~~~~~~~~~l~~L~~~ea 161 (1074)
+.++. -=+|++||++.... |+ .+....+ ....|-+||+|++.. ++...+...-.++++++++++.
T Consensus 93 ~~~~~-~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r 171 (219)
T PF00308_consen 93 DRLRS-ADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDR 171 (219)
T ss_dssp HHHCT-SSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHH
T ss_pred hhhhc-CCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHH
Confidence 66664 34678999976421 21 2211111 113577899999652 2223334455899999999999
Q ss_pred HHHHHHhhhcCCCCChhHHHHHHHHHHHhCCCc
Q 001458 162 LQLFNMKAFKTYQPLQECVQLSARIIRYAGGLP 194 (1074)
Q Consensus 162 ~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlP 194 (1074)
.+++.++|-...-. --++++.-+++.+.+..
T Consensus 172 ~~il~~~a~~~~~~--l~~~v~~~l~~~~~~~~ 202 (219)
T PF00308_consen 172 RRILQKKAKERGIE--LPEEVIEYLARRFRRDV 202 (219)
T ss_dssp HHHHHHHHHHTT----S-HHHHHHHHHHTTSSH
T ss_pred HHHHHHHHHHhCCC--CcHHHHHHHHHhhcCCH
Confidence 99999887543222 12244555555554433
No 84
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.96 E-value=0.00018 Score=87.23 Aligned_cols=175 Identities=18% Similarity=0.124 Sum_probs=99.8
Q ss_pred HHHHHHhhcCCCCCeEEEEEEccCCCcHHHHHHHHHHHhccc-c-c-ceEEEee-chhhh-------------ccCChHH
Q 001458 5 CEKLRFLMDSGSSDVRMIGICGMGGLGKTTIARVVYDLISHE-F-E-ASGFLDN-VREIS-------------SKGGLVS 67 (1074)
Q Consensus 5 ~~~l~~lL~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-F-~-~~~~~~~-~~~~s-------------~~~~~~~ 67 (1074)
++.|...+..+ .=.+.+.++|+.|+||||+|+.+++.+... . . ..|..+. +..+. ...++..
T Consensus 25 v~~LknaI~~~-rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~DviEidAas~~kVDd 103 (944)
T PRK14949 25 LHALTNALTQQ-RLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLIEVDAASRTKVDD 103 (944)
T ss_pred HHHHHHHHHhC-CCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEEEeccccccCHHH
Confidence 34455666532 224667899999999999999999876432 1 0 0111110 00000 0011111
Q ss_pred HHHHHHHHHhcccCCccccccchHHHHHhhhCCCeEEEEEcCCCCh--HHHHHHhcCCCCCCCCCEEEEEeCCh-hhhhh
Q 001458 68 LQRQLLSQLLKLADNSIWNVFDGIDMLGSRLQRKKVLLVIDDVVDV--KQLQSLAGNREWFGSGSRIIITSRDE-HLLKT 144 (1074)
Q Consensus 68 l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~gs~IiiTTR~~-~v~~~ 144 (1074)
.+++...+. .....+++-++|||+++.+ ...+.|+..+.......++|++|.+. .+...
T Consensus 104 -IReLie~v~-----------------~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~kLl~T 165 (944)
T PRK14949 104 -TRELLDNVQ-----------------YRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVT 165 (944)
T ss_pred -HHHHHHHHH-----------------hhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchhchHH
Confidence 122222210 0112467789999999876 35666655544334567777766553 34333
Q ss_pred -cCCCceecCCCCChHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCCch-HHHHH
Q 001458 145 -HGVDEVYKPHGLNYDEALQLFNMKAFKTYQPLQECVQLSARIIRYAGGLPL-ALEVL 200 (1074)
Q Consensus 145 -~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPL-al~~~ 200 (1074)
......|++++++.++..+.+.+.+-... ..-..+....|++.++|.|- |+..+
T Consensus 166 IlSRCq~f~fkpLs~eEI~~~L~~il~~Eg--I~~edeAL~lIA~~S~Gd~R~ALnLL 221 (944)
T PRK14949 166 VLSRCLQFNLKSLTQDEIGTQLNHILTQEQ--LPFEAEALTLLAKAANGSMRDALSLT 221 (944)
T ss_pred HHHhheEEeCCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 22346899999999999999987653321 11223567789999999885 44333
No 85
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.96 E-value=5.6e-06 Score=87.64 Aligned_cols=94 Identities=14% Similarity=0.089 Sum_probs=60.6
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhcc-cccceEEEeechhhhccCChHHHHHHHHHHHhcccCCcc-----ccccchHH
Q 001458 19 VRMIGICGMGGLGKTTIARVVYDLISH-EFEASGFLDNVREISSKGGLVSLQRQLLSQLLKLADNSI-----WNVFDGID 92 (1074)
Q Consensus 19 ~~vv~I~G~gGiGKTtLA~~v~~~~~~-~F~~~~~~~~~~~~s~~~~~~~l~~~ll~~l~~~~~~~~-----~~~~~~~~ 92 (1074)
-..++|.|++|+|||||++++|+.+.. +|+..+|+..+.+ +..++.++++++...+.-..-... .-......
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~e--r~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~ 93 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDE--RPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLE 93 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccC--CCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHH
Confidence 356899999999999999999997654 6898999875432 225788888888433322111111 01112222
Q ss_pred HHHhh-hCCCeEEEEEcCCCChH
Q 001458 93 MLGSR-LQRKKVLLVIDDVVDVK 114 (1074)
Q Consensus 93 ~i~~~-L~~kr~LlVLDdv~~~~ 114 (1074)
..+.. -.++++++++|++....
T Consensus 94 ~a~~~~~~G~~vll~iDei~r~a 116 (249)
T cd01128 94 KAKRLVEHGKDVVILLDSITRLA 116 (249)
T ss_pred HHHHHHHCCCCEEEEEECHHHhh
Confidence 22222 34799999999997654
No 86
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.96 E-value=1.1e-05 Score=88.89 Aligned_cols=94 Identities=14% Similarity=0.093 Sum_probs=61.7
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHhcc-cccceEEEeechhhhccCChHHHHHHHHHHHhcccCCcccc-----ccchHHH
Q 001458 20 RMIGICGMGGLGKTTIARVVYDLISH-EFEASGFLDNVREISSKGGLVSLQRQLLSQLLKLADNSIWN-----VFDGIDM 93 (1074)
Q Consensus 20 ~vv~I~G~gGiGKTtLA~~v~~~~~~-~F~~~~~~~~~~~~s~~~~~~~l~~~ll~~l~~~~~~~~~~-----~~~~~~~ 93 (1074)
+-.+|+|++|+||||||+++|+.+.. +|+..+|+..+++. ...+.++++++...+.......... ....++.
T Consensus 170 QR~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER--~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~ 247 (416)
T PRK09376 170 QRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDER--PEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEK 247 (416)
T ss_pred ceEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCc--hhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHH
Confidence 34789999999999999999997654 79999999866552 2367788888864333222111111 1111222
Q ss_pred HHhh-hCCCeEEEEEcCCCChHH
Q 001458 94 LGSR-LQRKKVLLVIDDVVDVKQ 115 (1074)
Q Consensus 94 i~~~-L~~kr~LlVLDdv~~~~~ 115 (1074)
.+.. -.+++++|++|++.....
T Consensus 248 Ae~~~e~G~dVlL~iDsItR~ar 270 (416)
T PRK09376 248 AKRLVEHGKDVVILLDSITRLAR 270 (416)
T ss_pred HHHHHHcCCCEEEEEEChHHHHH
Confidence 2222 367999999999976543
No 87
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.95 E-value=0.00028 Score=83.03 Aligned_cols=167 Identities=20% Similarity=0.134 Sum_probs=96.1
Q ss_pred HHHHHHhhcCCCCCeEEEEEEccCCCcHHHHHHHHHHHhcccc---------------------cceEEEeechhhhccC
Q 001458 5 CEKLRFLMDSGSSDVRMIGICGMGGLGKTTIARVVYDLISHEF---------------------EASGFLDNVREISSKG 63 (1074)
Q Consensus 5 ~~~l~~lL~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F---------------------~~~~~~~~~~~~s~~~ 63 (1074)
++.|..++..+ .-.+.+.++|+.|+||||+|+.+++.+.... ...+.+. .+...
T Consensus 24 v~~L~~aI~~g-rl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDviEID----AAs~~ 98 (702)
T PRK14960 24 SRALSSALERG-RLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDLIEID----AASRT 98 (702)
T ss_pred HHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCceEEec----ccccC
Confidence 45566666533 2257889999999999999999998653211 1111111 00011
Q ss_pred ChHHHHHHHHHHHhcccCCccccccchHHHHHhhhCCCeEEEEEcCCCChH--HHHHHhcCCCCCCCCCEEEEEeCChh-
Q 001458 64 GLVSLQRQLLSQLLKLADNSIWNVFDGIDMLGSRLQRKKVLLVIDDVVDVK--QLQSLAGNREWFGSGSRIIITSRDEH- 140 (1074)
Q Consensus 64 ~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~~kr~LlVLDdv~~~~--~l~~l~~~~~~~~~gs~IiiTTR~~~- 140 (1074)
++.++ ++++.... ..-..+++-++|+|+|+... ....+...+..-.++.++|++|.+.+
T Consensus 99 ~VddI-Reli~~~~-----------------y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~k 160 (702)
T PRK14960 99 KVEDT-RELLDNVP-----------------YAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQK 160 (702)
T ss_pred CHHHH-HHHHHHHh-----------------hhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHh
Confidence 11111 11111100 01113566789999998763 45555544433345678888887643
Q ss_pred hhhh-cCCCceecCCCCChHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCCchH
Q 001458 141 LLKT-HGVDEVYKPHGLNYDEALQLFNMKAFKTYQPLQECVQLSARIIRYAGGLPLA 196 (1074)
Q Consensus 141 v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLa 196 (1074)
+... ......+++++++.++..+.+.+.+-+.... -..+....|++.++|.+-.
T Consensus 161 Ip~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~--id~eAL~~IA~~S~GdLRd 215 (702)
T PRK14960 161 LPITVISRCLQFTLRPLAVDEITKHLGAILEKEQIA--ADQDAIWQIAESAQGSLRD 215 (702)
T ss_pred hhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHH
Confidence 2211 2334688999999999999888776433221 1234567788899987744
No 88
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.93 E-value=0.00023 Score=82.71 Aligned_cols=163 Identities=14% Similarity=0.148 Sum_probs=97.9
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHhcccc--cceEEEeechhhhccCChHHHHHHHHHHHhcccCCccccccchHHHHHhh
Q 001458 20 RMIGICGMGGLGKTTIARVVYDLISHEF--EASGFLDNVREISSKGGLVSLQRQLLSQLLKLADNSIWNVFDGIDMLGSR 97 (1074)
Q Consensus 20 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F--~~~~~~~~~~~~s~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~ 97 (1074)
.-+.|+|..|.|||+|++++++.+.... ..++|+. ..++...+...+... .+..+.+++.
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~----------~~~f~~~~~~~l~~~--------~~~~~~~~~~ 203 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMS----------GDEFARKAVDILQKT--------HKEIEQFKNE 203 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE----------HHHHHHHHHHHHHHh--------hhHHHHHHHH
Confidence 4589999999999999999999665332 2334443 234445555443210 0123445555
Q ss_pred hCCCeEEEEEcCCCChH---H-HHHHhcCCCC-CCCCCEEEEEeCCh---------hhhhhcCCCceecCCCCChHHHHH
Q 001458 98 LQRKKVLLVIDDVVDVK---Q-LQSLAGNREW-FGSGSRIIITSRDE---------HLLKTHGVDEVYKPHGLNYDEALQ 163 (1074)
Q Consensus 98 L~~kr~LlVLDdv~~~~---~-l~~l~~~~~~-~~~gs~IiiTTR~~---------~v~~~~~~~~~~~l~~L~~~ea~~ 163 (1074)
++. .-+||+||+.... . .+.+...+.. ...|..||+|+... .+...+...-.+++++++.++..+
T Consensus 204 ~~~-~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~ 282 (450)
T PRK14087 204 ICQ-NDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATA 282 (450)
T ss_pred hcc-CCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHH
Confidence 543 4478899996542 1 2233222111 13455788886532 222333344578899999999999
Q ss_pred HHHHhhhcCCCCChhHHHHHHHHHHHhCCCchHHHHHH
Q 001458 164 LFNMKAFKTYQPLQECVQLSARIIRYAGGLPLALEVLG 201 (1074)
Q Consensus 164 Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~g 201 (1074)
++.+++-.......-.+++..-|++.++|.|-.+.-+.
T Consensus 283 iL~~~~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL 320 (450)
T PRK14087 283 IIKKEIKNQNIKQEVTEEAINFISNYYSDDVRKIKGSV 320 (450)
T ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHccCCCHHHHHHHH
Confidence 99988743221111234677889999999987665544
No 89
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=97.92 E-value=0.00012 Score=77.55 Aligned_cols=161 Identities=16% Similarity=0.130 Sum_probs=87.6
Q ss_pred HHHHHhhcCCCCCeEEEEEEccCCCcHHHHHHHHHHHhcccccceEEEeechhhhccCChHHHHHHHHHHHhcccCCccc
Q 001458 6 EKLRFLMDSGSSDVRMIGICGMGGLGKTTIARVVYDLISHEFEASGFLDNVREISSKGGLVSLQRQLLSQLLKLADNSIW 85 (1074)
Q Consensus 6 ~~l~~lL~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~ll~~l~~~~~~~~~ 85 (1074)
..+..+.. +....+.+.|+|..|+|||+||+++++.....-....++.. ... .. .+
T Consensus 30 ~~l~~~~~-~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~-~~~---------~~----~~--------- 85 (227)
T PRK08903 30 ARLRELAA-GPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDA-ASP---------LL----AF--------- 85 (227)
T ss_pred HHHHHHHh-ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeh-HHh---------HH----HH---------
Confidence 34444443 22234678999999999999999999865333223344431 110 00 00
Q ss_pred cccchHHHHHhhhCCCeEEEEEcCCCChH--HHHHHhcCCCC-CCCCC-EEEEEeCChhhhh--------hcCCCceecC
Q 001458 86 NVFDGIDMLGSRLQRKKVLLVIDDVVDVK--QLQSLAGNREW-FGSGS-RIIITSRDEHLLK--------THGVDEVYKP 153 (1074)
Q Consensus 86 ~~~~~~~~i~~~L~~kr~LlVLDdv~~~~--~l~~l~~~~~~-~~~gs-~IiiTTR~~~v~~--------~~~~~~~~~l 153 (1074)
.. ....-+||+||++... +.+.+...... ...|. .||+|++...... .+.....+++
T Consensus 86 ----------~~-~~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l 154 (227)
T PRK08903 86 ----------DF-DPEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYEL 154 (227)
T ss_pred ----------hh-cccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEe
Confidence 01 1223478899997542 22223222111 12344 3666666432111 2222357899
Q ss_pred CCCChHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCCchHHHHHHhh
Q 001458 154 HGLNYDEALQLFNMKAFKTYQPLQECVQLSARIIRYAGGLPLALEVLGSF 203 (1074)
Q Consensus 154 ~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~g~~ 203 (1074)
+++++++-.+++.+.+-...-. --.+....+++...|.+..++.+-..
T Consensus 155 ~pl~~~~~~~~l~~~~~~~~v~--l~~~al~~L~~~~~gn~~~l~~~l~~ 202 (227)
T PRK08903 155 KPLSDADKIAALKAAAAERGLQ--LADEVPDYLLTHFRRDMPSLMALLDA 202 (227)
T ss_pred cCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHhccCCHHHHHHHHHH
Confidence 9999988777776544221111 12346667777888888887666543
No 90
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.92 E-value=9.2e-06 Score=65.94 Aligned_cols=58 Identities=31% Similarity=0.415 Sum_probs=35.0
Q ss_pred CCCCEEEcCCCcccccCc-chhccCCCCEeecCCCCCCccccchhcccCCCCEEEccCC
Q 001458 615 KDLSELFLDGTSIKEVPS-SIELLTKLELLNLSDCKNLVRLPSSIIALKSLKTLNLSGC 672 (1074)
Q Consensus 615 ~~L~~L~L~~~~l~~lp~-~~~~l~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~L~~c 672 (1074)
++|++|++++|.++.+|. .+..+++|++|++++|......+..|..+++|++|++++|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 356677777777776664 4566666666666666554444445555555555555555
No 91
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.92 E-value=9.5e-06 Score=65.85 Aligned_cols=34 Identities=29% Similarity=0.425 Sum_probs=14.1
Q ss_pred CccEEEccCcCCccCch-hhhcCCCCCEEeccCCC
Q 001458 545 HLSELHLEGTAIRGLPL-SIELLSGLVLLNLKNCR 578 (1074)
Q Consensus 545 ~L~~L~L~~~~i~~lp~-~~~~l~~L~~L~L~~~~ 578 (1074)
+|++|++++|.++.+|. .+..+++|++|++++|.
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~ 36 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNN 36 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCc
Confidence 34444444444444442 23333333333333333
No 92
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.91 E-value=0.00026 Score=83.05 Aligned_cols=185 Identities=12% Similarity=0.091 Sum_probs=96.8
Q ss_pred HHHHHHhhcCCCCCeEEEEEEccCCCcHHHHHHHHHHHhccccc-ceEEEeechhhhccCChHHHHHHHHH----HHhcc
Q 001458 5 CEKLRFLMDSGSSDVRMIGICGMGGLGKTTIARVVYDLISHEFE-ASGFLDNVREISSKGGLVSLQRQLLS----QLLKL 79 (1074)
Q Consensus 5 ~~~l~~lL~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~-~~~~~~~~~~~s~~~~~~~l~~~ll~----~l~~~ 79 (1074)
++.|...+..+ .-.+.+.++|..|+||||+|+.+++.+...=. ..--+ .+...+.-...+.+.. .++..
T Consensus 25 v~~L~~al~~g-RLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~-----~~~PCG~C~sC~~I~aG~hpDviEI 98 (700)
T PRK12323 25 VRALTHALEQQ-RLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGI-----TAQPCGQCRACTEIDAGRFVDYIEM 98 (700)
T ss_pred HHHHHHHHHhC-CCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccC-----CCCCCcccHHHHHHHcCCCCcceEe
Confidence 44566666532 22567899999999999999999986532100 00000 0000000000001000 00000
Q ss_pred cCCccccccchHHHHHh----hhCCCeEEEEEcCCCChH--HHHHHhcCCCCCCCCCEEEEEeCC-hhhhhhc-CCCcee
Q 001458 80 ADNSIWNVFDGIDMLGS----RLQRKKVLLVIDDVVDVK--QLQSLAGNREWFGSGSRIIITSRD-EHLLKTH-GVDEVY 151 (1074)
Q Consensus 80 ~~~~~~~~~~~~~~i~~----~L~~kr~LlVLDdv~~~~--~l~~l~~~~~~~~~gs~IiiTTR~-~~v~~~~-~~~~~~ 151 (1074)
.......+++..+.+.. -..++.-++|+|+++.+. ..+.|+..+..-.++.++|++|.+ ..+.... .....+
T Consensus 99 dAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLlpTIrSRCq~f 178 (700)
T PRK12323 99 DAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQF 178 (700)
T ss_pred cccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhhhHHHHHHHhc
Confidence 00000011111111111 113456689999998764 466666555433456676666655 4444332 224578
Q ss_pred cCCCCChHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCCchHH
Q 001458 152 KPHGLNYDEALQLFNMKAFKTYQPLQECVQLSARIIRYAGGLPLAL 197 (1074)
Q Consensus 152 ~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal 197 (1074)
.++.++.++..+.+.+.+-..... ...+..+.|++.++|.|.-.
T Consensus 179 ~f~~ls~eei~~~L~~Il~~Egi~--~d~eAL~~IA~~A~Gs~RdA 222 (700)
T PRK12323 179 NLKQMPPGHIVSHLDAILGEEGIA--HEVNALRLLAQAAQGSMRDA 222 (700)
T ss_pred ccCCCChHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHH
Confidence 999999999999888766332211 12245678899999988643
No 93
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=97.91 E-value=0.00038 Score=77.63 Aligned_cols=168 Identities=17% Similarity=0.196 Sum_probs=97.8
Q ss_pred HHHHHHhhcCCCCCeEEEEEEccCCCcHHHHHHHHHHHhcc------cccceEEEeechhhhccCChHHHHHHHHHHHhc
Q 001458 5 CEKLRFLMDSGSSDVRMIGICGMGGLGKTTIARVVYDLISH------EFEASGFLDNVREISSKGGLVSLQRQLLSQLLK 78 (1074)
Q Consensus 5 ~~~l~~lL~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~------~F~~~~~~~~~~~~s~~~~~~~l~~~ll~~l~~ 78 (1074)
++++...+..+ .-.+...++|+.|+||||+|+++++.+-. +.+...|.. . ......+.+ .+++...+..
T Consensus 13 ~~~l~~~~~~~-~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~-~--~~~~i~v~~-ir~~~~~~~~ 87 (313)
T PRK05564 13 KNRIKNSIIKN-RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKP-I--NKKSIGVDD-IRNIIEEVNK 87 (313)
T ss_pred HHHHHHHHHcC-CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecc-c--cCCCCCHHH-HHHHHHHHhc
Confidence 45566666532 23567899999999999999999986522 223222221 0 011122222 2222222110
Q ss_pred ccCCccccccchHHHHHhhhCCCeEEEEEcCCCC--hHHHHHHhcCCCCCCCCCEEEEEeCChh-hhhh-cCCCceecCC
Q 001458 79 LADNSIWNVFDGIDMLGSRLQRKKVLLVIDDVVD--VKQLQSLAGNREWFGSGSRIIITSRDEH-LLKT-HGVDEVYKPH 154 (1074)
Q Consensus 79 ~~~~~~~~~~~~~~~i~~~L~~kr~LlVLDdv~~--~~~l~~l~~~~~~~~~gs~IiiTTR~~~-v~~~-~~~~~~~~l~ 154 (1074)
.-..+++-++|+|+++. ...++.+...+..-.+++.+|++|.+.+ +... ......+++.
T Consensus 88 -----------------~p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc~~~~~~ 150 (313)
T PRK05564 88 -----------------KPYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQIYKLN 150 (313)
T ss_pred -----------------CcccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhceeeeCC
Confidence 01123444556666654 4557777766555567889998887653 2222 1234688999
Q ss_pred CCChHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCCchHHHHH
Q 001458 155 GLNYDEALQLFNMKAFKTYQPLQECVQLSARIIRYAGGLPLALEVL 200 (1074)
Q Consensus 155 ~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~ 200 (1074)
+++.++....+.... .. .. .+.+..++.+++|.|..+...
T Consensus 151 ~~~~~~~~~~l~~~~-~~--~~---~~~~~~l~~~~~g~~~~a~~~ 190 (313)
T PRK05564 151 RLSKEEIEKFISYKY-ND--IK---EEEKKSAIAFSDGIPGKVEKF 190 (313)
T ss_pred CcCHHHHHHHHHHHh-cC--CC---HHHHHHHHHHcCCCHHHHHHH
Confidence 999999988776543 11 11 233667899999998765443
No 94
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.90 E-value=0.00025 Score=83.35 Aligned_cols=170 Identities=18% Similarity=0.148 Sum_probs=95.9
Q ss_pred HHHHHHhhcCCCCCeEEEEEEccCCCcHHHHHHHHHHHhccc---------------------ccceEEEeechhhhccC
Q 001458 5 CEKLRFLMDSGSSDVRMIGICGMGGLGKTTIARVVYDLISHE---------------------FEASGFLDNVREISSKG 63 (1074)
Q Consensus 5 ~~~l~~lL~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~---------------------F~~~~~~~~~~~~s~~~ 63 (1074)
++.|...+..+ .-.+.+.++|+.|+||||+|+.+++.+... |.....+. .....
T Consensus 25 v~~L~~~i~~~-rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlieid----aas~~ 99 (546)
T PRK14957 25 LNSLVHALETQ-KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEID----AASRT 99 (546)
T ss_pred HHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEee----ccccc
Confidence 44566666532 224668899999999999999999865321 11111111 00111
Q ss_pred ChHHHHHHHHHHHhcccCCccccccchHHHHHh-hhCCCeEEEEEcCCCChH--HHHHHhcCCCCCCCCCEEEEEeCCh-
Q 001458 64 GLVSLQRQLLSQLLKLADNSIWNVFDGIDMLGS-RLQRKKVLLVIDDVVDVK--QLQSLAGNREWFGSGSRIIITSRDE- 139 (1074)
Q Consensus 64 ~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~-~L~~kr~LlVLDdv~~~~--~l~~l~~~~~~~~~gs~IiiTTR~~- 139 (1074)
++.++ ++++.. +.. -..+++-++|+|+++... ..+.|...+....+...+|++|.+.
T Consensus 100 gvd~i-r~ii~~------------------~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~Ttd~~ 160 (546)
T PRK14957 100 GVEET-KEILDN------------------IQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYH 160 (546)
T ss_pred CHHHH-HHHHHH------------------HHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEECChh
Confidence 22111 122211 111 123566799999998654 4556655544334566666555553
Q ss_pred hhhhh-cCCCceecCCCCChHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCCch-HHHHH
Q 001458 140 HLLKT-HGVDEVYKPHGLNYDEALQLFNMKAFKTYQPLQECVQLSARIIRYAGGLPL-ALEVL 200 (1074)
Q Consensus 140 ~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPL-al~~~ 200 (1074)
.+... ......+++++++.++..+.+.+.+-.... .-..+....|++.++|.+- |+..+
T Consensus 161 kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi--~~e~~Al~~Ia~~s~GdlR~alnlL 221 (546)
T PRK14957 161 KIPVTILSRCIQLHLKHISQADIKDQLKIILAKENI--NSDEQSLEYIAYHAKGSLRDALSLL 221 (546)
T ss_pred hhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 34433 223468999999999988888765533221 1123455678888888663 44444
No 95
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=97.89 E-value=0.0003 Score=79.06 Aligned_cols=183 Identities=16% Similarity=0.194 Sum_probs=110.2
Q ss_pred hhHHHHHHHhhcCC--CCCeEEEEEEccCCCcHHHHHHHHHHHhcccccc--eEEEeechhhhccCChHHHHHHHHHHHh
Q 001458 2 DSRCEKLRFLMDSG--SSDVRMIGICGMGGLGKTTIARVVYDLISHEFEA--SGFLDNVREISSKGGLVSLQRQLLSQLL 77 (1074)
Q Consensus 2 ~~~~~~l~~lL~~~--~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~--~~~~~~~~~~s~~~~~~~l~~~ll~~l~ 77 (1074)
|++++++...|..- .....-+.|+|..|+|||+.++.+++++...... ++++. + ....+..++..+++.++.
T Consensus 23 e~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yIN-c---~~~~t~~~i~~~i~~~~~ 98 (366)
T COG1474 23 EEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYIN-C---LELRTPYQVLSKILNKLG 98 (366)
T ss_pred HHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEe-e---eeCCCHHHHHHHHHHHcC
Confidence 45666666665431 1122338999999999999999999987665433 35554 3 234466778888888865
Q ss_pred cccCCccccccchHHHHHhhhC--CCeEEEEEcCCCChHH-----HHHHhcCCCCCCCCCEEE--EEeCChhhhh-----
Q 001458 78 KLADNSIWNVFDGIDMLGSRLQ--RKKVLLVIDDVVDVKQ-----LQSLAGNREWFGSGSRII--ITSRDEHLLK----- 143 (1074)
Q Consensus 78 ~~~~~~~~~~~~~~~~i~~~L~--~kr~LlVLDdv~~~~~-----l~~l~~~~~~~~~gs~Ii--iTTR~~~v~~----- 143 (1074)
... .......+....+.+.+. ++.++||||+++.... +-.|....... .++|+ ..+-+-....
T Consensus 99 ~~p-~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~--~~~v~vi~i~n~~~~~~~ld~r 175 (366)
T COG1474 99 KVP-LTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGEN--KVKVSIIAVSNDDKFLDYLDPR 175 (366)
T ss_pred CCC-CCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhcccc--ceeEEEEEEeccHHHHHHhhhh
Confidence 222 222444455666666665 4789999999987543 22332222211 45443 3444433222
Q ss_pred ---hcCCCceecCCCCChHHHHHHHHHhh---hcCCCCChhHHHHHHHHHHHhCC
Q 001458 144 ---THGVDEVYKPHGLNYDEALQLFNMKA---FKTYQPLQECVQLSARIIRYAGG 192 (1074)
Q Consensus 144 ---~~~~~~~~~l~~L~~~ea~~Lf~~~a---~~~~~~~~~~~~~~~~i~~~~~G 192 (1074)
..+.. .+..++-+.+|-.+.+..++ |......++..+++..++...+|
T Consensus 176 v~s~l~~~-~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~G 229 (366)
T COG1474 176 VKSSLGPS-EIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESG 229 (366)
T ss_pred hhhccCcc-eeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCc
Confidence 22323 36677888888888888765 44444555556666666666665
No 96
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.87 E-value=0.00012 Score=83.82 Aligned_cols=180 Identities=16% Similarity=0.085 Sum_probs=95.6
Q ss_pred HHHHHHhhcCCCCCeEEEEEEccCCCcHHHHHHHHHHHhccccc---ceEEEeechhhhccCChHHHHHHHHHHHhcc--
Q 001458 5 CEKLRFLMDSGSSDVRMIGICGMGGLGKTTIARVVYDLISHEFE---ASGFLDNVREISSKGGLVSLQRQLLSQLLKL-- 79 (1074)
Q Consensus 5 ~~~l~~lL~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~---~~~~~~~~~~~s~~~~~~~l~~~ll~~l~~~-- 79 (1074)
+..|..++..+. -.+.+.++|+.|+||||+|+.+++.+...-. ..|..+.. -..+.......+..-
T Consensus 27 v~~L~~~i~~~r-i~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~s--------C~~i~~g~~~dviEIda 97 (484)
T PRK14956 27 IGALQNALKSGK-IGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTS--------CLEITKGISSDVLEIDA 97 (484)
T ss_pred HHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcH--------HHHHHccCCccceeech
Confidence 445666665332 2356899999999999999999986543210 01111100 000000000000000
Q ss_pred -cCCccccccchHHHHHh-hhCCCeEEEEEcCCCChH--HHHHHhcCCCCCCCCCEEEEEeCC-hhhhhhc-CCCceecC
Q 001458 80 -ADNSIWNVFDGIDMLGS-RLQRKKVLLVIDDVVDVK--QLQSLAGNREWFGSGSRIIITSRD-EHLLKTH-GVDEVYKP 153 (1074)
Q Consensus 80 -~~~~~~~~~~~~~~i~~-~L~~kr~LlVLDdv~~~~--~l~~l~~~~~~~~~gs~IiiTTR~-~~v~~~~-~~~~~~~l 153 (1074)
......++.+..+.+.. ...++.-++|+|+++... .++.|+..+..-.....+|.+|.+ ..+.... .....|.+
T Consensus 98 as~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~SRCq~~~f 177 (484)
T PRK14956 98 ASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETILSRCQDFIF 177 (484)
T ss_pred hhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHHhhhheeee
Confidence 00001111111111111 123566789999998754 467766554432345555555554 4443332 23457999
Q ss_pred CCCChHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCCch
Q 001458 154 HGLNYDEALQLFNMKAFKTYQPLQECVQLSARIIRYAGGLPL 195 (1074)
Q Consensus 154 ~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPL 195 (1074)
.+++.++..+.+.+.+-.... .-..+....|++.++|.+-
T Consensus 178 ~~ls~~~i~~~L~~i~~~Egi--~~e~eAL~~Ia~~S~Gd~R 217 (484)
T PRK14956 178 KKVPLSVLQDYSEKLCKIENV--QYDQEGLFWIAKKGDGSVR 217 (484)
T ss_pred cCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCChHH
Confidence 999999998888877643221 1123467789999999873
No 97
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=97.82 E-value=0.00015 Score=73.70 Aligned_cols=147 Identities=20% Similarity=0.180 Sum_probs=77.1
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHHHHhcccccceEEEeechhhhccCChHHHHHHHHHHHhcccCCccccccchHHHHHh
Q 001458 17 SDVRMIGICGMGGLGKTTIARVVYDLISHEFEASGFLDNVREISSKGGLVSLQRQLLSQLLKLADNSIWNVFDGIDMLGS 96 (1074)
Q Consensus 17 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~ 96 (1074)
+...-+.+||++|+||||||+.+++.....|.. +.. ..-....++. .. ..
T Consensus 48 ~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~---~sg----~~i~k~~dl~----------------------~i-l~ 97 (233)
T PF05496_consen 48 EALDHMLFYGPPGLGKTTLARIIANELGVNFKI---TSG----PAIEKAGDLA----------------------AI-LT 97 (233)
T ss_dssp S---EEEEESSTTSSHHHHHHHHHHHCT--EEE---EEC----CC--SCHHHH----------------------HH-HH
T ss_pred CCcceEEEECCCccchhHHHHHHHhccCCCeEe---ccc----hhhhhHHHHH----------------------HH-HH
Confidence 346678999999999999999999988777642 210 0000111111 11 11
Q ss_pred hhCCCeEEEEEcCCCChH--HHHHHhcCCCC--------CCCCC-----------EEEEEeCChhhhhhcCC--CceecC
Q 001458 97 RLQRKKVLLVIDDVVDVK--QLQSLAGNREW--------FGSGS-----------RIIITSRDEHLLKTHGV--DEVYKP 153 (1074)
Q Consensus 97 ~L~~kr~LlVLDdv~~~~--~l~~l~~~~~~--------~~~gs-----------~IiiTTR~~~v~~~~~~--~~~~~l 153 (1074)
.++ ++-+|++|+++... +-+.|.+.... .++++ -|=-|||...+...+.. .-..++
T Consensus 98 ~l~-~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligATTr~g~ls~pLrdRFgi~~~l 176 (233)
T PF05496_consen 98 NLK-EGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATTRAGLLSSPLRDRFGIVLRL 176 (233)
T ss_dssp T---TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEESSGCCTSHCCCTTSSEEEE-
T ss_pred hcC-CCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeeeccccccchhHHhhcceecch
Confidence 222 45578889998653 33333322111 12333 23357776444332221 234578
Q ss_pred CCCChHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCCchH
Q 001458 154 HGLNYDEALQLFNMKAFKTYQPLQECVQLSARIIRYAGGLPLA 196 (1074)
Q Consensus 154 ~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLa 196 (1074)
+..+.+|-.++..+.|-.-.- +-..+.+.+|++++.|.|--
T Consensus 177 ~~Y~~~el~~Iv~r~a~~l~i--~i~~~~~~~Ia~rsrGtPRi 217 (233)
T PF05496_consen 177 EFYSEEELAKIVKRSARILNI--EIDEDAAEEIARRSRGTPRI 217 (233)
T ss_dssp ---THHHHHHHHHHCCHCTT---EE-HHHHHHHHHCTTTSHHH
T ss_pred hcCCHHHHHHHHHHHHHHhCC--CcCHHHHHHHHHhcCCChHH
Confidence 999999999999887743322 22346788999999999954
No 98
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=97.82 E-value=0.0013 Score=74.17 Aligned_cols=96 Identities=14% Similarity=0.048 Sum_probs=61.6
Q ss_pred CCeEEEEEcCCCChH--HHHHHhcCCCCCCCCCEEEEEeCCh-hhhhhc-CCCceecCCCCChHHHHHHHHHhhhcCCCC
Q 001458 100 RKKVLLVIDDVVDVK--QLQSLAGNREWFGSGSRIIITSRDE-HLLKTH-GVDEVYKPHGLNYDEALQLFNMKAFKTYQP 175 (1074)
Q Consensus 100 ~kr~LlVLDdv~~~~--~l~~l~~~~~~~~~gs~IiiTTR~~-~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~ 175 (1074)
+.+.++|+|+++... ....|...+..-.++..+|++|.+. .+.... .....+.+.+++.++..+++...... .
T Consensus 140 ~~~kVviIDead~m~~~aanaLLK~LEepp~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~---~ 216 (365)
T PRK07471 140 GGWRVVIVDTADEMNANAANALLKVLEEPPARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPD---L 216 (365)
T ss_pred CCCEEEEEechHhcCHHHHHHHHHHHhcCCCCeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhccc---C
Confidence 456789999998654 3444443332223566677777664 343332 33568999999999999999876411 1
Q ss_pred ChhHHHHHHHHHHHhCCCchHHHHHH
Q 001458 176 LQECVQLSARIIRYAGGLPLALEVLG 201 (1074)
Q Consensus 176 ~~~~~~~~~~i~~~~~GlPLal~~~g 201 (1074)
.+ +....+++.++|.|+....+.
T Consensus 217 ~~---~~~~~l~~~s~Gsp~~Al~ll 239 (365)
T PRK07471 217 PD---DPRAALAALAEGSVGRALRLA 239 (365)
T ss_pred CH---HHHHHHHHHcCCCHHHHHHHh
Confidence 11 112678999999998665543
No 99
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=97.81 E-value=0.00055 Score=77.79 Aligned_cols=169 Identities=12% Similarity=0.053 Sum_probs=95.3
Q ss_pred HHHHHHHhhcCCCC--------CeEEEEEEccCCCcHHHHHHHHHHHhcccc--------------------cceEEEee
Q 001458 4 RCEKLRFLMDSGSS--------DVRMIGICGMGGLGKTTIARVVYDLISHEF--------------------EASGFLDN 55 (1074)
Q Consensus 4 ~~~~l~~lL~~~~~--------~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F--------------------~~~~~~~~ 55 (1074)
-++.|...+..+.+ -.+.+.++|+.|+||||+|+.++..+-... +...++..
T Consensus 13 ~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~hpD~~~i~~ 92 (394)
T PRK07940 13 VVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTHPDVRVVAP 92 (394)
T ss_pred HHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEecc
Confidence 34556666654321 357789999999999999999998653221 11111110
Q ss_pred chhhhccCChHHHHHHHHHHHhcccCCccccccchHHHHHhhhCCCeEEEEEcCCCChH--HHHHHhcCCCCCCCCCEEE
Q 001458 56 VREISSKGGLVSLQRQLLSQLLKLADNSIWNVFDGIDMLGSRLQRKKVLLVIDDVVDVK--QLQSLAGNREWFGSGSRII 133 (1074)
Q Consensus 56 ~~~~s~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~~kr~LlVLDdv~~~~--~l~~l~~~~~~~~~gs~Ii 133 (1074)
.....++.++ +++.+.+.. .-..+++-++|+|+++... ....+...+....++..+|
T Consensus 93 ---~~~~i~i~~i-R~l~~~~~~-----------------~p~~~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fI 151 (394)
T PRK07940 93 ---EGLSIGVDEV-RELVTIAAR-----------------RPSTGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWL 151 (394)
T ss_pred ---ccccCCHHHH-HHHHHHHHh-----------------CcccCCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEE
Confidence 0000111111 112211100 0112345577889998764 2344444333334567677
Q ss_pred EEeCCh-hhhhhc-CCCceecCCCCChHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCCchHHHHH
Q 001458 134 ITSRDE-HLLKTH-GVDEVYKPHGLNYDEALQLFNMKAFKTYQPLQECVQLSARIIRYAGGLPLALEVL 200 (1074)
Q Consensus 134 iTTR~~-~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~ 200 (1074)
++|.+. .+.... .....+.++.++.++..+.+.... + .. .+.+..+++.++|.|.....+
T Consensus 152 L~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~-~---~~---~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 152 LCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRD-G---VD---PETARRAARASQGHIGRARRL 213 (394)
T ss_pred EEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhc-C---CC---HHHHHHHHHHcCCCHHHHHHH
Confidence 766663 444332 234689999999999998887442 1 11 244678899999999765444
No 100
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=97.79 E-value=0.00056 Score=79.96 Aligned_cols=96 Identities=16% Similarity=0.134 Sum_probs=62.2
Q ss_pred CCCeEEEEEcCCCCh--HHHHHHhcCCCCCCCCCEEEEEe-CChhhhhhc-CCCceecCCCCChHHHHHHHHHhhhcCCC
Q 001458 99 QRKKVLLVIDDVVDV--KQLQSLAGNREWFGSGSRIIITS-RDEHLLKTH-GVDEVYKPHGLNYDEALQLFNMKAFKTYQ 174 (1074)
Q Consensus 99 ~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~gs~IiiTT-R~~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~ 174 (1074)
.+++-++|+|+++.. .+++.|...+....+.+.+|++| +.+.+.... .....+++++++.++..+.+.+.+-....
T Consensus 126 ~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi 205 (507)
T PRK06645 126 QGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENL 205 (507)
T ss_pred cCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 356778999999875 34666665444334566666544 444454433 23457899999999999999888754332
Q ss_pred CChhHHHHHHHHHHHhCCCchH
Q 001458 175 PLQECVQLSARIIRYAGGLPLA 196 (1074)
Q Consensus 175 ~~~~~~~~~~~i~~~~~GlPLa 196 (1074)
.. ..+....|++.++|.+--
T Consensus 206 ~i--e~eAL~~Ia~~s~GslR~ 225 (507)
T PRK06645 206 KT--DIEALRIIAYKSEGSARD 225 (507)
T ss_pred CC--CHHHHHHHHHHcCCCHHH
Confidence 11 124456788889987733
No 101
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=97.78 E-value=0.00045 Score=82.14 Aligned_cols=170 Identities=18% Similarity=0.130 Sum_probs=93.2
Q ss_pred HHHHHHhhcCCCCCeEEEEEEccCCCcHHHHHHHHHHHhcccccc---eEEEe-echhh-------------hccCChHH
Q 001458 5 CEKLRFLMDSGSSDVRMIGICGMGGLGKTTIARVVYDLISHEFEA---SGFLD-NVREI-------------SSKGGLVS 67 (1074)
Q Consensus 5 ~~~l~~lL~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~---~~~~~-~~~~~-------------s~~~~~~~ 67 (1074)
++.|..++..+ .-.+.+.++|+.|+||||+|+.+++.+...-.. .|-.+ .++.+ +...++.
T Consensus 25 v~~L~~ai~~~-rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~DvlEidaAs~~gVd- 102 (709)
T PRK08691 25 VKALQNALDEG-RLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDLLEIDAASNTGID- 102 (709)
T ss_pred HHHHHHHHHcC-CCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccceEEEeccccCCHH-
Confidence 45666666632 225678999999999999999998864321100 00000 00000 0011111
Q ss_pred HHHHHHHHHhcccCCccccccchHHHHHh-hhCCCeEEEEEcCCCChHH--HHHHhcCCCCCCCCCEEEEEeCChh-hhh
Q 001458 68 LQRQLLSQLLKLADNSIWNVFDGIDMLGS-RLQRKKVLLVIDDVVDVKQ--LQSLAGNREWFGSGSRIIITSRDEH-LLK 143 (1074)
Q Consensus 68 l~~~ll~~l~~~~~~~~~~~~~~~~~i~~-~L~~kr~LlVLDdv~~~~~--l~~l~~~~~~~~~gs~IiiTTR~~~-v~~ 143 (1074)
..++++.. ... -..+++-++|+|+++.... ...|+..+..-....++|++|.+.+ +..
T Consensus 103 ~IRelle~------------------a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~~ 164 (709)
T PRK08691 103 NIREVLEN------------------AQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPV 164 (709)
T ss_pred HHHHHHHH------------------HHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccch
Confidence 11111111 000 0124667899999987643 4444433322235667777776543 322
Q ss_pred h-cCCCceecCCCCChHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCCchH
Q 001458 144 T-HGVDEVYKPHGLNYDEALQLFNMKAFKTYQPLQECVQLSARIIRYAGGLPLA 196 (1074)
Q Consensus 144 ~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLa 196 (1074)
. .+....++++.++.++..+.+.+.+-+.... -..+....|++.++|.+.-
T Consensus 165 TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~--id~eAL~~Ia~~A~GslRd 216 (709)
T PRK08691 165 TVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIA--YEPPALQLLGRAAAGSMRD 216 (709)
T ss_pred HHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCC--cCHHHHHHHHHHhCCCHHH
Confidence 2 1223468888999999999888766433221 1234577899999998744
No 102
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.78 E-value=0.00026 Score=81.11 Aligned_cols=165 Identities=15% Similarity=0.196 Sum_probs=88.3
Q ss_pred hhHHHHHHHhhcC-----------CCCCeEEEEEEccCCCcHHHHHHHHHHHhcccccceEEEeechhhhccCChHHHHH
Q 001458 2 DSRCEKLRFLMDS-----------GSSDVRMIGICGMGGLGKTTIARVVYDLISHEFEASGFLDNVREISSKGGLVSLQR 70 (1074)
Q Consensus 2 ~~~~~~l~~lL~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~ 70 (1074)
+..++++.+.+.. +-...+-|.++|++|+|||++|+++++.....|-. +. ..+
T Consensus 137 ~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~---v~-~~~------------ 200 (389)
T PRK03992 137 EEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIR---VV-GSE------------ 200 (389)
T ss_pred HHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEE---ee-hHH------------
Confidence 4556666665421 11235668999999999999999999976544321 11 111
Q ss_pred HHHHHHhcccCCccccccchHHHHHhh-hCCCeEEEEEcCCCChH------------H----HHHHhcCCCCC--CCCCE
Q 001458 71 QLLSQLLKLADNSIWNVFDGIDMLGSR-LQRKKVLLVIDDVVDVK------------Q----LQSLAGNREWF--GSGSR 131 (1074)
Q Consensus 71 ~ll~~l~~~~~~~~~~~~~~~~~i~~~-L~~kr~LlVLDdv~~~~------------~----l~~l~~~~~~~--~~gs~ 131 (1074)
+.....+. .......+-+. -...+.+|+||+++... . +..+......+ ..+.+
T Consensus 201 -l~~~~~g~-------~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~ 272 (389)
T PRK03992 201 -LVQKFIGE-------GARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVK 272 (389)
T ss_pred -HhHhhccc-------hHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEE
Confidence 11110000 00011111111 12456789999998641 1 22222222211 23556
Q ss_pred EEEEeCChhhhhh-c----CCCceecCCCCChHHHHHHHHHhhhcCCCC-ChhHHHHHHHHHHHhCCCc
Q 001458 132 IIITSRDEHLLKT-H----GVDEVYKPHGLNYDEALQLFNMKAFKTYQP-LQECVQLSARIIRYAGGLP 194 (1074)
Q Consensus 132 IiiTTR~~~v~~~-~----~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~-~~~~~~~~~~i~~~~~GlP 194 (1074)
||.||........ . ..+..++++..+.++..++|..++.+...+ ..++ ..+++.+.|.-
T Consensus 273 VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~----~~la~~t~g~s 337 (389)
T PRK03992 273 IIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDL----EELAELTEGAS 337 (389)
T ss_pred EEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCH----HHHHHHcCCCC
Confidence 7777765432221 1 235678999999999999999877543222 1222 34556666644
No 103
>PRK06620 hypothetical protein; Validated
Probab=97.78 E-value=0.00017 Score=75.03 Aligned_cols=131 Identities=13% Similarity=0.003 Sum_probs=74.0
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHhcccccceEEEeechhhhccCChHHHHHHHHHHHhcccCCccccccchHHHHHhhhC
Q 001458 20 RMIGICGMGGLGKTTIARVVYDLISHEFEASGFLDNVREISSKGGLVSLQRQLLSQLLKLADNSIWNVFDGIDMLGSRLQ 99 (1074)
Q Consensus 20 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~ 99 (1074)
+.+.|||++|+|||+||+++.+.... .++... .. . . +.+
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~-----~~~~~~------~~----~----~---------------------~~~- 83 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNA-----YIIKDI------FF----N----E---------------------EIL- 83 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCC-----EEcchh------hh----c----h---------------------hHH-
Confidence 66899999999999999998765421 222100 00 0 0 011
Q ss_pred CCeEEEEEcCCCChHHHHHHhcCCC-CCCCCCEEEEEeCChh-------hhhhcCCCceecCCCCChHHHHHHHHHhhhc
Q 001458 100 RKKVLLVIDDVVDVKQLQSLAGNRE-WFGSGSRIIITSRDEH-------LLKTHGVDEVYKPHGLNYDEALQLFNMKAFK 171 (1074)
Q Consensus 100 ~kr~LlVLDdv~~~~~l~~l~~~~~-~~~~gs~IiiTTR~~~-------v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~ 171 (1074)
+..-++++||++...+. .+...++ ....|..||+|++... +...+...-.++++++++++..+++.+.+..
T Consensus 84 ~~~d~lliDdi~~~~~~-~lf~l~N~~~e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~ 162 (214)
T PRK06620 84 EKYNAFIIEDIENWQEP-ALLHIFNIINEKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSI 162 (214)
T ss_pred hcCCEEEEeccccchHH-HHHHHHHHHHhcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHH
Confidence 12346889999865431 2211111 0135678999987532 2222333457899999999988888776642
Q ss_pred CCCCChhHHHHHHHHHHHhCCCc
Q 001458 172 TYQPLQECVQLSARIIRYAGGLP 194 (1074)
Q Consensus 172 ~~~~~~~~~~~~~~i~~~~~GlP 194 (1074)
..- .--+++..-|++++.|.-
T Consensus 163 ~~l--~l~~ev~~~L~~~~~~d~ 183 (214)
T PRK06620 163 SSV--TISRQIIDFLLVNLPREY 183 (214)
T ss_pred cCC--CCCHHHHHHHHHHccCCH
Confidence 211 111244555555555543
No 104
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=97.78 E-value=0.00064 Score=76.43 Aligned_cols=171 Identities=16% Similarity=0.177 Sum_probs=93.5
Q ss_pred HHHHHHHhhcCCCCCeEEEEEEccCCCcHHHHHHHHHHHhcccccceEEEeechhhhccCChHHHHHHHHHHHhcccCCc
Q 001458 4 RCEKLRFLMDSGSSDVRMIGICGMGGLGKTTIARVVYDLISHEFEASGFLDNVREISSKGGLVSLQRQLLSQLLKLADNS 83 (1074)
Q Consensus 4 ~~~~l~~lL~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~ll~~l~~~~~~~ 83 (1074)
-++.+..++.. ...+.+.++|..|+||||+|+.+++..........++. +. .+...+.. ...+.+..+.....
T Consensus 25 ~~~~l~~~i~~--~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~-~~-~~~~~~~~-~~~~~i~~~~~~~~-- 97 (319)
T PRK00440 25 IVERLKSYVKE--KNMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLE-LN-ASDERGID-VIRNKIKEFARTAP-- 97 (319)
T ss_pred HHHHHHHHHhC--CCCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEE-ec-cccccchH-HHHHHHHHHHhcCC--
Confidence 45566666653 23445799999999999999999987643221111221 00 11111111 11122222111000
Q ss_pred cccccchHHHHHhhhCCCeEEEEEcCCCChH--HHHHHhcCCCCCCCCCEEEEEeCCh-hhhhh-cCCCceecCCCCChH
Q 001458 84 IWNVFDGIDMLGSRLQRKKVLLVIDDVVDVK--QLQSLAGNREWFGSGSRIIITSRDE-HLLKT-HGVDEVYKPHGLNYD 159 (1074)
Q Consensus 84 ~~~~~~~~~~i~~~L~~kr~LlVLDdv~~~~--~l~~l~~~~~~~~~gs~IiiTTR~~-~v~~~-~~~~~~~~l~~L~~~ 159 (1074)
.....+-+||+|+++... ..+.+........+.+++|+++... .+... ......+++++++.+
T Consensus 98 -------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~l~~~ 164 (319)
T PRK00440 98 -------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAVFRFSPLKKE 164 (319)
T ss_pred -------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhheeeeCCCCHH
Confidence 001235689999997653 2344443333344567777777432 22111 112336889999999
Q ss_pred HHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCCchH
Q 001458 160 EALQLFNMKAFKTYQPLQECVQLSARIIRYAGGLPLA 196 (1074)
Q Consensus 160 ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLa 196 (1074)
+....+...+-.....- ..+....+++.++|.+--
T Consensus 165 ei~~~l~~~~~~~~~~i--~~~al~~l~~~~~gd~r~ 199 (319)
T PRK00440 165 AVAERLRYIAENEGIEI--TDDALEAIYYVSEGDMRK 199 (319)
T ss_pred HHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHH
Confidence 99888887774433211 234567788889988754
No 105
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.78 E-value=0.00055 Score=79.75 Aligned_cols=101 Identities=17% Similarity=0.084 Sum_probs=60.9
Q ss_pred CCeEEEEEcCCCChH--HHHHHhcCCCCCCCCCEEEEEeCC-hhhhhhc-CCCceecCCCCChHHHHHHHHHhhhcCCCC
Q 001458 100 RKKVLLVIDDVVDVK--QLQSLAGNREWFGSGSRIIITSRD-EHLLKTH-GVDEVYKPHGLNYDEALQLFNMKAFKTYQP 175 (1074)
Q Consensus 100 ~kr~LlVLDdv~~~~--~l~~l~~~~~~~~~gs~IiiTTR~-~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~ 175 (1074)
+++-++|+|+++... +.+.+........+...+|++|.+ ..+.... .....+++.+++.++....+...+......
T Consensus 116 ~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~ 195 (472)
T PRK14962 116 GKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIE 195 (472)
T ss_pred CCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCC
Confidence 466799999998763 355555444332334444445443 3343322 234578999999999988888776433221
Q ss_pred ChhHHHHHHHHHHHhCCC-chHHHHHHh
Q 001458 176 LQECVQLSARIIRYAGGL-PLALEVLGS 202 (1074)
Q Consensus 176 ~~~~~~~~~~i~~~~~Gl-PLal~~~g~ 202 (1074)
- ..+....|+++++|. +.|+..+..
T Consensus 196 i--~~eal~~Ia~~s~GdlR~aln~Le~ 221 (472)
T PRK14962 196 I--DREALSFIAKRASGGLRDALTMLEQ 221 (472)
T ss_pred C--CHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 1 134566788877664 566655544
No 106
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=97.77 E-value=0.00055 Score=78.26 Aligned_cols=173 Identities=18% Similarity=0.160 Sum_probs=98.3
Q ss_pred hHHHHHHHhhcCCCCCeEEEEEEccCCCcHHHHHHHHHHHhccc----ccc-----------------eEEEeechhhhc
Q 001458 3 SRCEKLRFLMDSGSSDVRMIGICGMGGLGKTTIARVVYDLISHE----FEA-----------------SGFLDNVREISS 61 (1074)
Q Consensus 3 ~~~~~l~~lL~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~----F~~-----------------~~~~~~~~~~s~ 61 (1074)
.-++.+...+..+ .-.+.+.++|+.|+||||+|+.++..+... +.. ..++.. ..
T Consensus 21 ~~~~~l~~~~~~~-~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~~~~~~----~~ 95 (355)
T TIGR02397 21 HIVQTLKNAIKNG-RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDVIEIDA----AS 95 (355)
T ss_pred HHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEeec----cc
Confidence 3456666666533 224678899999999999999999865321 110 111110 00
Q ss_pred cCChHHHHHHHHHHHhcccCCccccccchHHHHHhhhCCCeEEEEEcCCCCh--HHHHHHhcCCCCCCCCCEEEEEeCCh
Q 001458 62 KGGLVSLQRQLLSQLLKLADNSIWNVFDGIDMLGSRLQRKKVLLVIDDVVDV--KQLQSLAGNREWFGSGSRIIITSRDE 139 (1074)
Q Consensus 62 ~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~gs~IiiTTR~~ 139 (1074)
..+. +..+++...+.. .-..+++-++|+|+++.. .....+........+.+.+|++|.+.
T Consensus 96 ~~~~-~~~~~l~~~~~~-----------------~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl~~~~~ 157 (355)
T TIGR02397 96 NNGV-DDIREILDNVKY-----------------APSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILATTEP 157 (355)
T ss_pred cCCH-HHHHHHHHHHhc-----------------CcccCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEEEeCCH
Confidence 0011 111122222100 012245558889999766 34555555444334567777777554
Q ss_pred h-hhhhc-CCCceecCCCCChHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCCchHHHHH
Q 001458 140 H-LLKTH-GVDEVYKPHGLNYDEALQLFNMKAFKTYQPLQECVQLSARIIRYAGGLPLALEVL 200 (1074)
Q Consensus 140 ~-v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~ 200 (1074)
+ +.... .....+++++++.++..+.+...+-......+ .+.+..+++.++|.|..+...
T Consensus 158 ~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~i~--~~a~~~l~~~~~g~~~~a~~~ 218 (355)
T TIGR02397 158 HKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKIE--DEALELIARAADGSLRDALSL 218 (355)
T ss_pred HHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCChHHHHHH
Confidence 3 33222 22357888999999998888877643322111 356778889999988665443
No 107
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.76 E-value=7.6e-07 Score=101.68 Aligned_cols=122 Identities=24% Similarity=0.166 Sum_probs=52.8
Q ss_pred EEEccCcCCccCchhhhcCCCCCEEeccCCCCCccccccccCCCCCCEEEecCCCCCCccchhhcCCCCCCEEEcCCCcc
Q 001458 548 ELHLEGTAIRGLPLSIELLSGLVLLNLKNCRSLEILPVTVSNLKCLRSLKLSGCSKLKKFPEIVRSMKDLSELFLDGTSI 627 (1074)
Q Consensus 548 ~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~Ls~~~~~~~~p~~~~~l~~L~~L~L~~~~l 627 (1074)
..+.++|.+..+..++.-++.|+.|+|++|+....- .+..++.|++|||+.|... .+|..-..-..|..|.+.+|.+
T Consensus 168 ~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lrnN~l 244 (1096)
T KOG1859|consen 168 TASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLRNNAL 244 (1096)
T ss_pred hhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhc-cccccchhhhhheeeeecccHH
Confidence 333444444444444444444444444444433222 3344444444444443321 2221111111255555666555
Q ss_pred cccCcchhccCCCCEeecCCCCCCcc-ccchhcccCCCCEEEccCCc
Q 001458 628 KEVPSSIELLTKLELLNLSDCKNLVR-LPSSIIALKSLKTLNLSGCF 673 (1074)
Q Consensus 628 ~~lp~~~~~l~~L~~L~L~~~~~l~~-~~~~~~~l~~L~~L~L~~c~ 673 (1074)
+.+. .+.++.+|+.|++++|-+... --..+..+..|+.|+|.||+
T Consensus 245 ~tL~-gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 245 TTLR-GIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred Hhhh-hHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 5543 245555666666655543221 11223344555555555554
No 108
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.76 E-value=9.3e-05 Score=75.76 Aligned_cols=45 Identities=31% Similarity=0.501 Sum_probs=31.3
Q ss_pred hhHHHHHHHhhcC-CCCCeEEEEEEccCCCcHHHHHHHHHHHhccc
Q 001458 2 DSRCEKLRFLMDS-GSSDVRMIGICGMGGLGKTTIARVVYDLISHE 46 (1074)
Q Consensus 2 ~~~~~~l~~lL~~-~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 46 (1074)
+.+++++...++. .....+.+.|+|.+|+|||+|+++++.++...
T Consensus 6 ~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 6 EEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 4677888888853 33457999999999999999999999977666
No 109
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.76 E-value=0.0005 Score=79.74 Aligned_cols=155 Identities=16% Similarity=0.134 Sum_probs=88.7
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhccccc--ceEEEeechhhhccCChHHHHHHHHHHHhcccCCccccccchHHHHHh
Q 001458 19 VRMIGICGMGGLGKTTIARVVYDLISHEFE--ASGFLDNVREISSKGGLVSLQRQLLSQLLKLADNSIWNVFDGIDMLGS 96 (1074)
Q Consensus 19 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~--~~~~~~~~~~~s~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~ 96 (1074)
...+.|+|..|+|||+||+++++.+..+.. .++|+. ..++..++...+... ....+.+
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~----------~~~~~~~~~~~~~~~----------~~~~~~~ 195 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVS----------SEKFTNDFVNALRNN----------KMEEFKE 195 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEE----------HHHHHHHHHHHHHcC----------CHHHHHH
Confidence 346899999999999999999998765542 234443 122333444443211 1233444
Q ss_pred hhCCCeEEEEEcCCCChH---H-HHHHhcCCCC-CCCCCEEEEEeCC-hh--------hhhhcCCCceecCCCCChHHHH
Q 001458 97 RLQRKKVLLVIDDVVDVK---Q-LQSLAGNREW-FGSGSRIIITSRD-EH--------LLKTHGVDEVYKPHGLNYDEAL 162 (1074)
Q Consensus 97 ~L~~kr~LlVLDdv~~~~---~-l~~l~~~~~~-~~~gs~IiiTTR~-~~--------v~~~~~~~~~~~l~~L~~~ea~ 162 (1074)
.+++ .-+|||||++... . .+.+...+.. ...|..||||+.. .. +...+.....+++++.+.++..
T Consensus 196 ~~~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~ 274 (405)
T TIGR00362 196 KYRS-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRL 274 (405)
T ss_pred HHHh-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHH
Confidence 4443 3378899997532 1 1222221111 1245567787753 22 2222233346899999999999
Q ss_pred HHHHHhhhcCCCCChhHHHHHHHHHHHhCCCchH
Q 001458 163 QLFNMKAFKTYQPLQECVQLSARIIRYAGGLPLA 196 (1074)
Q Consensus 163 ~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLa 196 (1074)
+++...+-.....- ..++...|++.+.|..-.
T Consensus 275 ~il~~~~~~~~~~l--~~e~l~~ia~~~~~~~r~ 306 (405)
T TIGR00362 275 AILQKKAEEEGLEL--PDEVLEFIAKNIRSNVRE 306 (405)
T ss_pred HHHHHHHHHcCCCC--CHHHHHHHHHhcCCCHHH
Confidence 99998875432211 235566677777776543
No 110
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.74 E-value=8.3e-06 Score=84.04 Aligned_cols=229 Identities=18% Similarity=0.153 Sum_probs=118.0
Q ss_pred ccEEEccCcCCccCch--hh-hcCCCCCEEeccCCCCCcc--ccccccCCCCCCEEEecCCCCCCccchhhcCCCCCCEE
Q 001458 546 LSELHLEGTAIRGLPL--SI-ELLSGLVLLNLKNCRSLEI--LPVTVSNLKCLRSLKLSGCSKLKKFPEIVRSMKDLSEL 620 (1074)
Q Consensus 546 L~~L~L~~~~i~~lp~--~~-~~l~~L~~L~L~~~~~~~~--l~~~l~~l~~L~~L~Ls~~~~~~~~p~~~~~l~~L~~L 620 (1074)
++.|.+.++.|...-. .+ ...+.++.++|.+|.+..- +...+.++|.|++|+|+.|+....+...-....+|+.|
T Consensus 47 ~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~l 126 (418)
T KOG2982|consen 47 LELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVL 126 (418)
T ss_pred hhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEE
Confidence 3444555555544221 12 3456677777777665432 22335567777777777665543332221234566666
Q ss_pred EcCCCccc--ccCcchhccCCCCEeecCCCCCCccccchhcccCCCCEEEccCCcCCCcCcccccCCCCccEEEcCCCCC
Q 001458 621 FLDGTSIK--EVPSSIELLTKLELLNLSDCKNLVRLPSSIIALKSLKTLNLSGCFKLENVPETLGQIESLEELDISGTAV 698 (1074)
Q Consensus 621 ~L~~~~l~--~lp~~~~~l~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~L~~c~~l~~~p~~l~~l~~L~~L~L~~n~i 698 (1074)
.|.++.+. ...+.+..+|.++.|+++.|... .+++..+.... --+.+.+|...+|..
T Consensus 127 VLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~r--------------q~n~Dd~c~e~-------~s~~v~tlh~~~c~~ 185 (418)
T KOG2982|consen 127 VLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLR--------------QLNLDDNCIED-------WSTEVLTLHQLPCLE 185 (418)
T ss_pred EEcCCCCChhhhhhhhhcchhhhhhhhccchhh--------------hhccccccccc-------cchhhhhhhcCCcHH
Confidence 66666443 44445555666666666555311 11111110000 001122222222211
Q ss_pred CCCCCcccccccccccccccccCCCCCCCCCccEEecCCCCCCCCCCccccCCCCCCCeEecCCCcCcccC--ccccccC
Q 001458 699 PHSTSWYSYIPINLMRKSVALKLPSLSGLCSLRKLNLTDCNLMEGALPSDIGNLCSLKELYLSKNSFVSLP--TSITHLS 776 (1074)
Q Consensus 699 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~lp--~~i~~l~ 776 (1074)
..+.. .+. --.-+|++..+-+..|++.+..-......++.+.-|+|+.|++.+.. ..+..++
T Consensus 186 ~~w~~----------~~~------l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~ 249 (418)
T KOG2982|consen 186 QLWLN----------KNK------LSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFP 249 (418)
T ss_pred HHHHH----------HHh------HHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCc
Confidence 00000 000 01235677777777887765455556677788888999999887553 3467889
Q ss_pred CCCEeeccCCcCCCcCCCCCCCcceEeecCccccccc
Q 001458 777 KLLNIELEDCKRLQSLPQLPPNIRQVRVNGCASLVTL 813 (1074)
Q Consensus 777 ~L~~L~L~~c~~L~~lp~lp~sL~~L~i~~C~~L~~l 813 (1074)
.|..|.++++|....+..- -=++|-|...++++-+
T Consensus 250 ~l~dlRv~~~Pl~d~l~~~--err~llIaRL~~v~vL 284 (418)
T KOG2982|consen 250 QLVDLRVSENPLSDPLRGG--ERRFLLIARLTKVQVL 284 (418)
T ss_pred hhheeeccCCcccccccCC--cceEEEEeeccceEEe
Confidence 9999999999877766541 1133444444444443
No 111
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.72 E-value=0.00098 Score=78.57 Aligned_cols=168 Identities=18% Similarity=0.118 Sum_probs=94.3
Q ss_pred HHHHHHhhcCCCCCeEEEEEEccCCCcHHHHHHHHHHHhccc---------------------ccceEEEeechhhhccC
Q 001458 5 CEKLRFLMDSGSSDVRMIGICGMGGLGKTTIARVVYDLISHE---------------------FEASGFLDNVREISSKG 63 (1074)
Q Consensus 5 ~~~l~~lL~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~---------------------F~~~~~~~~~~~~s~~~ 63 (1074)
++.|...+..+ .-.+.+.++|+.|+||||+|+.+++.+-.. |.....+. .+...
T Consensus 25 ~~~L~~~~~~~-~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~eid----aas~~ 99 (509)
T PRK14958 25 VRALSNALDQQ-YLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLFEVD----AASRT 99 (509)
T ss_pred HHHHHHHHHhC-CCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEEEEc----ccccC
Confidence 45666666532 224667899999999999999999855321 11122221 11112
Q ss_pred ChHHHHHHHHHHHhcccCCccccccchHHHHHhhhCCCeEEEEEcCCCChH--HHHHHhcCCCCCCCCCEEEEEeCCh-h
Q 001458 64 GLVSLQRQLLSQLLKLADNSIWNVFDGIDMLGSRLQRKKVLLVIDDVVDVK--QLQSLAGNREWFGSGSRIIITSRDE-H 140 (1074)
Q Consensus 64 ~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~~kr~LlVLDdv~~~~--~l~~l~~~~~~~~~gs~IiiTTR~~-~ 140 (1074)
++.++ ++++..+.. .-..++.-++|+|+|+... ..+.+...+....+..++|++|.+. .
T Consensus 100 ~v~~i-R~l~~~~~~-----------------~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlattd~~k 161 (509)
T PRK14958 100 KVEDT-RELLDNIPY-----------------APTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHK 161 (509)
T ss_pred CHHHH-HHHHHHHhh-----------------ccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEECChHh
Confidence 22222 222222110 0113455678899998753 4555554443334667777766553 3
Q ss_pred hhhhc-CCCceecCCCCChHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCCchHH
Q 001458 141 LLKTH-GVDEVYKPHGLNYDEALQLFNMKAFKTYQPLQECVQLSARIIRYAGGLPLAL 197 (1074)
Q Consensus 141 v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal 197 (1074)
+.... .....++++.++.++..+.+.+.+-...... ..+....|++.++|.+--+
T Consensus 162 l~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~~--~~~al~~ia~~s~GslR~a 217 (509)
T PRK14958 162 LPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEF--ENAALDLLARAANGSVRDA 217 (509)
T ss_pred chHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCcHHHH
Confidence 33221 2235788999999988777766553322211 1234667888888877443
No 112
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=97.68 E-value=0.00081 Score=80.40 Aligned_cols=180 Identities=18% Similarity=0.143 Sum_probs=95.3
Q ss_pred HHHHHHhhcCCCCCeEEEEEEccCCCcHHHHHHHHHHHhcccccceEEEeechhhhccCChHHHHHHHHHH----Hh--c
Q 001458 5 CEKLRFLMDSGSSDVRMIGICGMGGLGKTTIARVVYDLISHEFEASGFLDNVREISSKGGLVSLQRQLLSQ----LL--K 78 (1074)
Q Consensus 5 ~~~l~~lL~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~ll~~----l~--~ 78 (1074)
++.|...+..+ .-.+.+.++|+.|+||||+|+.+++.+-..... . ....+.-...+++... +. .
T Consensus 25 v~~L~~~l~~~-rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~----~-----~~pCg~C~~C~~i~~g~~~D~ieid 94 (647)
T PRK07994 25 LTALANALDLG-RLHHAYLFSGTRGVGKTTIARLLAKGLNCETGI----T-----ATPCGECDNCREIEQGRFVDLIEID 94 (647)
T ss_pred HHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHhhhhccCC----C-----CCCCCCCHHHHHHHcCCCCCceeec
Confidence 44555556532 224667899999999999999999865332100 0 0000000111111100 00 0
Q ss_pred cc-CCccccccchHHHHH-hhhCCCeEEEEEcCCCChH--HHHHHhcCCCCCCCCCEEEEEeCC-hhhhhh-cCCCceec
Q 001458 79 LA-DNSIWNVFDGIDMLG-SRLQRKKVLLVIDDVVDVK--QLQSLAGNREWFGSGSRIIITSRD-EHLLKT-HGVDEVYK 152 (1074)
Q Consensus 79 ~~-~~~~~~~~~~~~~i~-~~L~~kr~LlVLDdv~~~~--~l~~l~~~~~~~~~gs~IiiTTR~-~~v~~~-~~~~~~~~ 152 (1074)
.. .....++.+.++.+. .-..+++-++|+|+++.+. ..+.|+..+..-.+..++|++|.+ ..+... ......|.
T Consensus 95 aas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~TI~SRC~~~~ 174 (647)
T PRK07994 95 AASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFH 174 (647)
T ss_pred ccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccchHHHhhheEee
Confidence 00 000011111111111 1124567789999998754 455555443333456666666655 444333 22356899
Q ss_pred CCCCChHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCCchH
Q 001458 153 PHGLNYDEALQLFNMKAFKTYQPLQECVQLSARIIRYAGGLPLA 196 (1074)
Q Consensus 153 l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLa 196 (1074)
++.++.++..+.+.+.+-..... ...+....|++.++|.+--
T Consensus 175 f~~Ls~~ei~~~L~~il~~e~i~--~e~~aL~~Ia~~s~Gs~R~ 216 (647)
T PRK07994 175 LKALDVEQIRQQLEHILQAEQIP--FEPRALQLLARAADGSMRD 216 (647)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHH
Confidence 99999999999998765322211 1234567889999998754
No 113
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.66 E-value=0.0014 Score=78.31 Aligned_cols=178 Identities=16% Similarity=0.126 Sum_probs=95.0
Q ss_pred HHHHHHhhcCCCCCeEEEEEEccCCCcHHHHHHHHHHHhccc--c--cceEEEeechhhhccCChHHHHHHHHHH----H
Q 001458 5 CEKLRFLMDSGSSDVRMIGICGMGGLGKTTIARVVYDLISHE--F--EASGFLDNVREISSKGGLVSLQRQLLSQ----L 76 (1074)
Q Consensus 5 ~~~l~~lL~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~--F--~~~~~~~~~~~~s~~~~~~~l~~~ll~~----l 76 (1074)
++.|..++..+ .-.+.+.++|+.|+||||+|+.+++.+-.. . .+... ...+.-...+.+-.. +
T Consensus 25 v~~L~~~l~~~-rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~--------~pCg~C~~C~~i~~g~h~D~ 95 (618)
T PRK14951 25 VQALTNALTQQ-RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITA--------TPCGVCQACRDIDSGRFVDY 95 (618)
T ss_pred HHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCC--------CCCCccHHHHHHHcCCCCce
Confidence 45566666533 235778999999999999999998765311 0 00000 000000111111000 0
Q ss_pred hcccCCccccccchHHHHHhhh--------CCCeEEEEEcCCCChH--HHHHHhcCCCCCCCCCEEEEEeCC-hhhhhh-
Q 001458 77 LKLADNSIWNVFDGIDMLGSRL--------QRKKVLLVIDDVVDVK--QLQSLAGNREWFGSGSRIIITSRD-EHLLKT- 144 (1074)
Q Consensus 77 ~~~~~~~~~~~~~~~~~i~~~L--------~~kr~LlVLDdv~~~~--~l~~l~~~~~~~~~gs~IiiTTR~-~~v~~~- 144 (1074)
...... ...+++.+++.+ .++.-++|||+|+... ..+.+...+..-....++|++|.+ ..+...
T Consensus 96 ~eldaa----s~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~kil~TI 171 (618)
T PRK14951 96 TELDAA----SNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPVTV 171 (618)
T ss_pred eecCcc----cccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhhhHHH
Confidence 000000 001111121111 2345688999998754 455665544433455667766654 344332
Q ss_pred cCCCceecCCCCChHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCCchHH
Q 001458 145 HGVDEVYKPHGLNYDEALQLFNMKAFKTYQPLQECVQLSARIIRYAGGLPLAL 197 (1074)
Q Consensus 145 ~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal 197 (1074)
......++++.++.++..+.+.+.+-+..... ..+....|++.++|.+--+
T Consensus 172 lSRc~~~~f~~Ls~eei~~~L~~i~~~egi~i--e~~AL~~La~~s~GslR~a 222 (618)
T PRK14951 172 LSRCLQFNLRPMAPETVLEHLTQVLAAENVPA--EPQALRLLARAARGSMRDA 222 (618)
T ss_pred HHhceeeecCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHH
Confidence 23346899999999999999887764332221 1245677888888877443
No 114
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.66 E-value=0.0016 Score=77.16 Aligned_cols=187 Identities=15% Similarity=0.116 Sum_probs=98.0
Q ss_pred HHHHHHhhcCCCCCeEEEEEEccCCCcHHHHHHHHHHHhcccccceEEEeechhhhccCChHHHHHHHHHHH----hccc
Q 001458 5 CEKLRFLMDSGSSDVRMIGICGMGGLGKTTIARVVYDLISHEFEASGFLDNVREISSKGGLVSLQRQLLSQL----LKLA 80 (1074)
Q Consensus 5 ~~~l~~lL~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~ll~~l----~~~~ 80 (1074)
++.|...+..+ .-.+.+.++|+.|+||||+|+.+++.+-......- ...+.-...+.+.... ....
T Consensus 25 ~~~L~~ai~~~-ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~---------~pCg~C~sC~~i~~g~hpDv~eId 94 (624)
T PRK14959 25 KAILSRAAQEN-RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTG---------EPCNTCEQCRKVTQGMHVDVVEID 94 (624)
T ss_pred HHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCC---------CCCcccHHHHHHhcCCCCceEEEe
Confidence 34455555422 22577889999999999999999986632110000 0000000011111000 0000
Q ss_pred CCccccccchHHHHHhh-----hCCCeEEEEEcCCCCh--HHHHHHhcCCCCCCCCCEEEEEeCC-hhhhhhc-CCCcee
Q 001458 81 DNSIWNVFDGIDMLGSR-----LQRKKVLLVIDDVVDV--KQLQSLAGNREWFGSGSRIIITSRD-EHLLKTH-GVDEVY 151 (1074)
Q Consensus 81 ~~~~~~~~~~~~~i~~~-----L~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~gs~IiiTTR~-~~v~~~~-~~~~~~ 151 (1074)
......++ .++.+.+. ..+++-++|+|+++.. +..+.|...+..-.+...+|++|.+ ..+.... .....+
T Consensus 95 ~a~~~~Id-~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll~TI~SRcq~i 173 (624)
T PRK14959 95 GASNRGID-DAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVTIVSRCQHF 173 (624)
T ss_pred cccccCHH-HHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhhHHHHhhhhcc
Confidence 00000000 01111111 2356678999999876 3455555544322345566666655 4444332 223578
Q ss_pred cCCCCChHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCCc-hHHHHHHhhc
Q 001458 152 KPHGLNYDEALQLFNMKAFKTYQPLQECVQLSARIIRYAGGLP-LALEVLGSFL 204 (1074)
Q Consensus 152 ~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlP-Lal~~~g~~L 204 (1074)
+++.++.++..+.+...+...... -..+.+..|++.++|.+ -|+..+...+
T Consensus 174 ~F~pLs~~eL~~~L~~il~~egi~--id~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 174 TFTRLSEAGLEAHLTKVLGREGVD--YDPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred ccCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 999999999998888766443221 12345777888999865 6776665443
No 115
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.66 E-value=5.2e-05 Score=84.05 Aligned_cols=93 Identities=14% Similarity=0.110 Sum_probs=62.1
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHhccc-ccceEEEeechhhhccCChHHHHHHHHHHHhcccCCccccc-----cchHHH
Q 001458 20 RMIGICGMGGLGKTTIARVVYDLISHE-FEASGFLDNVREISSKGGLVSLQRQLLSQLLKLADNSIWNV-----FDGIDM 93 (1074)
Q Consensus 20 ~vv~I~G~gGiGKTtLA~~v~~~~~~~-F~~~~~~~~~~~~s~~~~~~~l~~~ll~~l~~~~~~~~~~~-----~~~~~~ 93 (1074)
+.++|+|++|.||||||+.+++.+... |+..+|+..+++ +...+.++++.++..+....-...... ....+.
T Consensus 169 q~~~IvG~~g~GKTtL~~~i~~~I~~nhfdv~v~VlLIgE--R~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e~ 246 (415)
T TIGR00767 169 QRGLIVAPPKAGKTVLLQKIAQAITRNHPEVELIVLLIDE--RPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIEK 246 (415)
T ss_pred CEEEEECCCCCChhHHHHHHHHhhcccCCceEEEEEEcCC--CCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHHH
Confidence 458999999999999999999987655 998999885433 235788888888655433222211111 111122
Q ss_pred HHh-hhCCCeEEEEEcCCCChH
Q 001458 94 LGS-RLQRKKVLLVIDDVVDVK 114 (1074)
Q Consensus 94 i~~-~L~~kr~LlVLDdv~~~~ 114 (1074)
.+. +-.+++++|++|++....
T Consensus 247 Ae~~~~~GkdVVLlIDEitR~a 268 (415)
T TIGR00767 247 AKRLVEHKKDVVILLDSITRLA 268 (415)
T ss_pred HHHHHHcCCCeEEEEEChhHHH
Confidence 222 235799999999997654
No 116
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.64 E-value=0.00059 Score=79.32 Aligned_cols=156 Identities=15% Similarity=0.118 Sum_probs=89.5
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhccccc--ceEEEeechhhhccCChHHHHHHHHHHHhcccCCccccccchHHHHHh
Q 001458 19 VRMIGICGMGGLGKTTIARVVYDLISHEFE--ASGFLDNVREISSKGGLVSLQRQLLSQLLKLADNSIWNVFDGIDMLGS 96 (1074)
Q Consensus 19 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~--~~~~~~~~~~~s~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~ 96 (1074)
..-+.|||..|+|||+||+++++.+..... .+.|+. ..++..++...+... ....+++
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~----------~~~f~~~~~~~~~~~----------~~~~f~~ 189 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT----------SEKFLNDLVDSMKEG----------KLNEFRE 189 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE----------HHHHHHHHHHHHhcc----------cHHHHHH
Confidence 345899999999999999999998765543 344443 123344444443110 1233444
Q ss_pred hhCCCeEEEEEcCCCChH---HH-HHHhcCCC-CCCCCCEEEEEeC-Chhh--------hhhcCCCceecCCCCChHHHH
Q 001458 97 RLQRKKVLLVIDDVVDVK---QL-QSLAGNRE-WFGSGSRIIITSR-DEHL--------LKTHGVDEVYKPHGLNYDEAL 162 (1074)
Q Consensus 97 ~L~~kr~LlVLDdv~~~~---~l-~~l~~~~~-~~~~gs~IiiTTR-~~~v--------~~~~~~~~~~~l~~L~~~ea~ 162 (1074)
.++.+.-+||+||++... .. +.+...+. ....|..||+||. +..- ...+.....+++++.+.+.-.
T Consensus 190 ~~~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~ 269 (440)
T PRK14088 190 KYRKKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRK 269 (440)
T ss_pred HHHhcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHH
Confidence 444445589999997431 11 12211111 0123557888874 3221 112233457889999999999
Q ss_pred HHHHHhhhcCCCCChhHHHHHHHHHHHhCCCchH
Q 001458 163 QLFNMKAFKTYQPLQECVQLSARIIRYAGGLPLA 196 (1074)
Q Consensus 163 ~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLa 196 (1074)
+++.+++-.....- -.++..-|++.+.|.--.
T Consensus 270 ~IL~~~~~~~~~~l--~~ev~~~Ia~~~~~~~R~ 301 (440)
T PRK14088 270 KIARKMLEIEHGEL--PEEVLNFVAENVDDNLRR 301 (440)
T ss_pred HHHHHHHHhcCCCC--CHHHHHHHHhccccCHHH
Confidence 99988874322211 134566677776665433
No 117
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=97.63 E-value=0.0015 Score=77.10 Aligned_cols=98 Identities=18% Similarity=0.123 Sum_probs=57.7
Q ss_pred eEEEEEcCCCCh--HHHHHHhcCCCCCCCCCEEEEEeCC-hhhhhh-cCCCceecCCCCChHHHHHHHHHhhhcCCCCCh
Q 001458 102 KVLLVIDDVVDV--KQLQSLAGNREWFGSGSRIIITSRD-EHLLKT-HGVDEVYKPHGLNYDEALQLFNMKAFKTYQPLQ 177 (1074)
Q Consensus 102 r~LlVLDdv~~~--~~l~~l~~~~~~~~~gs~IiiTTR~-~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~ 177 (1074)
+-++|+|+++.. .....|...+..-.+...+|++|.. ..+... ......+++.+++.++....+...+-......
T Consensus 120 ~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~I- 198 (605)
T PRK05896 120 YKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPLTIISRCQRYNFKKLNNSELQELLKSIAKKEKIKI- 198 (605)
T ss_pred cEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhHHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCCCC-
Confidence 335999999875 3345554433222345556555543 344332 22345789999999999988887664322111
Q ss_pred hHHHHHHHHHHHhCCCch-HHHHHH
Q 001458 178 ECVQLSARIIRYAGGLPL-ALEVLG 201 (1074)
Q Consensus 178 ~~~~~~~~i~~~~~GlPL-al~~~g 201 (1074)
..+.+..+++.++|.+- |+..+-
T Consensus 199 -s~eal~~La~lS~GdlR~AlnlLe 222 (605)
T PRK05896 199 -EDNAIDKIADLADGSLRDGLSILD 222 (605)
T ss_pred -CHHHHHHHHHHcCCcHHHHHHHHH
Confidence 12446778888988653 444443
No 118
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.63 E-value=0.00079 Score=79.93 Aligned_cols=166 Identities=16% Similarity=0.099 Sum_probs=92.4
Q ss_pred HHHHHHhhcCCCCCeEEEEEEccCCCcHHHHHHHHHHHhcccc---------------------cceEEEeechhhhccC
Q 001458 5 CEKLRFLMDSGSSDVRMIGICGMGGLGKTTIARVVYDLISHEF---------------------EASGFLDNVREISSKG 63 (1074)
Q Consensus 5 ~~~l~~lL~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F---------------------~~~~~~~~~~~~s~~~ 63 (1074)
++.|..++..+ .-.+.+.++|+.|+||||+|+.+++.+.... ...+++. .+...
T Consensus 25 ~~~L~~~i~~~-~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~ei~----~~~~~ 99 (527)
T PRK14969 25 VRALTNALEQQ-RLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLIEVD----AASNT 99 (527)
T ss_pred HHHHHHHHHcC-CCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceeEee----ccccC
Confidence 34555556532 2246778999999999999999998653211 1111111 00011
Q ss_pred ChHHHHHHHHHHHhcccCCccccccchHHHHHhhhCCCeEEEEEcCCCChHH--HHHHhcCCCCCCCCCEEEEEeCCh-h
Q 001458 64 GLVSLQRQLLSQLLKLADNSIWNVFDGIDMLGSRLQRKKVLLVIDDVVDVKQ--LQSLAGNREWFGSGSRIIITSRDE-H 140 (1074)
Q Consensus 64 ~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~~kr~LlVLDdv~~~~~--l~~l~~~~~~~~~gs~IiiTTR~~-~ 140 (1074)
++.+ .++++.... ..-..+++-++|+|+++.... .+.+...+..-.....+|++|.+. .
T Consensus 100 ~vd~-ir~l~~~~~-----------------~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~d~~k 161 (527)
T PRK14969 100 QVDA-MRELLDNAQ-----------------YAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQK 161 (527)
T ss_pred CHHH-HHHHHHHHh-----------------hCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeCChhh
Confidence 1111 112222110 001135667899999987643 555554443334566677666553 3
Q ss_pred hhhh-cCCCceecCCCCChHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCCch
Q 001458 141 LLKT-HGVDEVYKPHGLNYDEALQLFNMKAFKTYQPLQECVQLSARIIRYAGGLPL 195 (1074)
Q Consensus 141 v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPL 195 (1074)
+... ......++++.++.++..+.+.+.+-..... ...+....|++.++|.+-
T Consensus 162 il~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi~--~~~~al~~la~~s~Gslr 215 (527)
T PRK14969 162 IPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIP--FDATALQLLARAAAGSMR 215 (527)
T ss_pred CchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHH
Confidence 3322 1123578999999999988887765332211 123455778888999774
No 119
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=97.63 E-value=0.00084 Score=75.24 Aligned_cols=182 Identities=17% Similarity=0.129 Sum_probs=96.7
Q ss_pred HHHHHhhcCCCCCeEEEEEEccCCCcHHHHHHHHHHHhccc----ccceEEEeechhhhccCChHHHHHHHHHH------
Q 001458 6 EKLRFLMDSGSSDVRMIGICGMGGLGKTTIARVVYDLISHE----FEASGFLDNVREISSKGGLVSLQRQLLSQ------ 75 (1074)
Q Consensus 6 ~~l~~lL~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~----F~~~~~~~~~~~~s~~~~~~~l~~~ll~~------ 75 (1074)
+.+...+..+ .-.+.+.|+|+.|+||||+|+.+++.+-.. +....... ..+--...+.+...
T Consensus 33 ~~L~~a~~~g-rl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~-------~~~~c~~c~~i~~~~hPdl~ 104 (351)
T PRK09112 33 AFLAQAYREG-KLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLAD-------PDPASPVWRQIAQGAHPNLL 104 (351)
T ss_pred HHHHHHHHcC-CCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCC-------CCCCCHHHHHHHcCCCCCEE
Confidence 4445555432 235679999999999999999999866431 11110000 00011112222111
Q ss_pred -Hhc---ccCC---ccccccchHHHHHhhh-----CCCeEEEEEcCCCChH--HHHHHhcCCCCCCCCCEEE-EEeCChh
Q 001458 76 -LLK---LADN---SIWNVFDGIDMLGSRL-----QRKKVLLVIDDVVDVK--QLQSLAGNREWFGSGSRII-ITSRDEH 140 (1074)
Q Consensus 76 -l~~---~~~~---~~~~~~~~~~~i~~~L-----~~kr~LlVLDdv~~~~--~l~~l~~~~~~~~~gs~Ii-iTTR~~~ 140 (1074)
+.. .... ..-.+ +.+..+.+.+ .+++-++|+|+++.+. ..+.+...+..-.++..+| +|++...
T Consensus 105 ~l~~~~~~~~~~~~~~I~v-d~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~fiLit~~~~~ 183 (351)
T PRK09112 105 HITRPFDEKTGKFKTAITV-DEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALFILISHSSGR 183 (351)
T ss_pred EeecccccccccccccCCH-HHHHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceEEEEECChhh
Confidence 000 0000 00011 1122333333 2466789999998764 2444443332223445544 4444444
Q ss_pred hhhhc-CCCceecCCCCChHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCCchHHHHH
Q 001458 141 LLKTH-GVDEVYKPHGLNYDEALQLFNMKAFKTYQPLQECVQLSARIIRYAGGLPLALEVL 200 (1074)
Q Consensus 141 v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~ 200 (1074)
+.... .....+.+.+++.++..+++...+.... -..+....+++.++|.|.....+
T Consensus 184 llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~~----~~~~~~~~i~~~s~G~pr~Al~l 240 (351)
T PRK09112 184 LLPTIRSRCQPISLKPLDDDELKKALSHLGSSQG----SDGEITEALLQRSKGSVRKALLL 240 (351)
T ss_pred ccHHHHhhccEEEecCCCHHHHHHHHHHhhcccC----CCHHHHHHHHHHcCCCHHHHHHH
Confidence 43332 2245899999999999999987432211 11344678999999999865544
No 120
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.63 E-value=0.0015 Score=75.84 Aligned_cols=167 Identities=16% Similarity=0.120 Sum_probs=95.4
Q ss_pred HHHHHHhhcCCCCCeEEEEEEccCCCcHHHHHHHHHHHhccc---------------------ccceEEEeechhhhccC
Q 001458 5 CEKLRFLMDSGSSDVRMIGICGMGGLGKTTIARVVYDLISHE---------------------FEASGFLDNVREISSKG 63 (1074)
Q Consensus 5 ~~~l~~lL~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~---------------------F~~~~~~~~~~~~s~~~ 63 (1074)
++.|...+..+ .-.+.+.++|+.|+||||+|+.+++.+-.. +..++.++ .+...
T Consensus 22 v~~L~~a~~~~-ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~eid----aas~~ 96 (491)
T PRK14964 22 VRILRNAFTLN-KIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIEID----AASNT 96 (491)
T ss_pred HHHHHHHHHcC-CCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEEEe----cccCC
Confidence 34444455422 124678999999999999999998754211 11122222 11112
Q ss_pred ChHHHHHHHHHHHhcccCCccccccchHHHHHhhhCCCeEEEEEcCCCChH--HHHHHhcCCCCCCCCCEEEEEeCC-hh
Q 001458 64 GLVSLQRQLLSQLLKLADNSIWNVFDGIDMLGSRLQRKKVLLVIDDVVDVK--QLQSLAGNREWFGSGSRIIITSRD-EH 140 (1074)
Q Consensus 64 ~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~~kr~LlVLDdv~~~~--~l~~l~~~~~~~~~gs~IiiTTR~-~~ 140 (1074)
++.++ ++++...-. .-..+++-++|+|+++... ..+.|...+..-.+..++|++|.+ +.
T Consensus 97 ~vddI-R~Iie~~~~-----------------~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatte~~K 158 (491)
T PRK14964 97 SVDDI-KVILENSCY-----------------LPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEVKK 158 (491)
T ss_pred CHHHH-HHHHHHHHh-----------------ccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeCChHH
Confidence 22221 122222100 0112456689999997653 355555444433466777766644 44
Q ss_pred hhhhc-CCCceecCCCCChHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCCchH
Q 001458 141 LLKTH-GVDEVYKPHGLNYDEALQLFNMKAFKTYQPLQECVQLSARIIRYAGGLPLA 196 (1074)
Q Consensus 141 v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLa 196 (1074)
+.... .....++++.++.++..+.+.+.+-+..... ..+....|++.++|.+-.
T Consensus 159 l~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~i--~~eAL~lIa~~s~GslR~ 213 (491)
T PRK14964 159 IPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIEH--DEESLKLIAENSSGSMRN 213 (491)
T ss_pred HHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHH
Confidence 43332 2345789999999999999988775433221 224566788888887743
No 121
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.61 E-value=0.00036 Score=79.96 Aligned_cols=147 Identities=15% Similarity=0.198 Sum_probs=80.8
Q ss_pred hhHHHHHHHhhcC-----------CCCCeEEEEEEccCCCcHHHHHHHHHHHhcccccceEEEeechhhhccCChHHHHH
Q 001458 2 DSRCEKLRFLMDS-----------GSSDVRMIGICGMGGLGKTTIARVVYDLISHEFEASGFLDNVREISSKGGLVSLQR 70 (1074)
Q Consensus 2 ~~~~~~l~~lL~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~ 70 (1074)
+..++++.+.+.. +-...+-|.++|++|.|||++|+++++.....|-. +.. + .+.
T Consensus 189 ~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~---V~~----s------eL~- 254 (438)
T PTZ00361 189 EQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLR---VVG----S------ELI- 254 (438)
T ss_pred HHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEE---Eec----c------hhh-
Confidence 4556666665531 11234568899999999999999999987655421 110 0 000
Q ss_pred HHHHHHhcccCCccccccchHHHHHhhhCCCeEEEEEcCCCChH----------------HHHHHhcCCCCC--CCCCEE
Q 001458 71 QLLSQLLKLADNSIWNVFDGIDMLGSRLQRKKVLLVIDDVVDVK----------------QLQSLAGNREWF--GSGSRI 132 (1074)
Q Consensus 71 ~ll~~l~~~~~~~~~~~~~~~~~i~~~L~~kr~LlVLDdv~~~~----------------~l~~l~~~~~~~--~~gs~I 132 (1074)
...... ........+.....+.+.+|+||+++..- .+-.+....+.+ ..+.+|
T Consensus 255 ---~k~~Ge------~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~V 325 (438)
T PTZ00361 255 ---QKYLGD------GPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKV 325 (438)
T ss_pred ---hhhcch------HHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEE
Confidence 000000 00000111111223467888999975321 111222222211 235678
Q ss_pred EEEeCChhhhhh-----cCCCceecCCCCChHHHHHHHHHhhhc
Q 001458 133 IITSRDEHLLKT-----HGVDEVYKPHGLNYDEALQLFNMKAFK 171 (1074)
Q Consensus 133 iiTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~a~~ 171 (1074)
|.||.....+.. ...+..+++...+.++..++|..++.+
T Consensus 326 I~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k 369 (438)
T PTZ00361 326 IMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSK 369 (438)
T ss_pred EEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhc
Confidence 888876443322 123567899999999999999987644
No 122
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.61 E-value=0.00074 Score=79.33 Aligned_cols=155 Identities=14% Similarity=0.124 Sum_probs=89.7
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhcccccc--eEEEeechhhhccCChHHHHHHHHHHHhcccCCccccccchHHHHHh
Q 001458 19 VRMIGICGMGGLGKTTIARVVYDLISHEFEA--SGFLDNVREISSKGGLVSLQRQLLSQLLKLADNSIWNVFDGIDMLGS 96 (1074)
Q Consensus 19 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~--~~~~~~~~~~s~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~ 96 (1074)
..-+.|+|..|+|||+||+++++.+..++.. +.|+. ..++..++...+.. .....+.+
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~----------~~~~~~~~~~~~~~----------~~~~~~~~ 207 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVT----------SEKFTNDFVNALRN----------NTMEEFKE 207 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEE----------HHHHHHHHHHHHHc----------CcHHHHHH
Confidence 3568999999999999999999988766532 33443 12223333333211 01234444
Q ss_pred hhCCCeEEEEEcCCCChH----HHHHHhcCCC-CCCCCCEEEEEeCCh--h-------hhhhcCCCceecCCCCChHHHH
Q 001458 97 RLQRKKVLLVIDDVVDVK----QLQSLAGNRE-WFGSGSRIIITSRDE--H-------LLKTHGVDEVYKPHGLNYDEAL 162 (1074)
Q Consensus 97 ~L~~kr~LlVLDdv~~~~----~l~~l~~~~~-~~~~gs~IiiTTR~~--~-------v~~~~~~~~~~~l~~L~~~ea~ 162 (1074)
.++ +.-+|||||++... ..+.+...+. ....|..|||||... . +...+.....+++++.+.++..
T Consensus 208 ~~~-~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~ 286 (450)
T PRK00149 208 KYR-SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRI 286 (450)
T ss_pred HHh-cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHH
Confidence 554 34488899996531 1122222111 012355678877542 1 2223333457899999999999
Q ss_pred HHHHHhhhcCCCCChhHHHHHHHHHHHhCCCchH
Q 001458 163 QLFNMKAFKTYQPLQECVQLSARIIRYAGGLPLA 196 (1074)
Q Consensus 163 ~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLa 196 (1074)
+++..++-..... --.++..-|++.+.|..-.
T Consensus 287 ~il~~~~~~~~~~--l~~e~l~~ia~~~~~~~R~ 318 (450)
T PRK00149 287 AILKKKAEEEGID--LPDEVLEFIAKNITSNVRE 318 (450)
T ss_pred HHHHHHHHHcCCC--CCHHHHHHHHcCcCCCHHH
Confidence 9999887542211 1224566677777776543
No 123
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.60 E-value=0.0031 Score=75.14 Aligned_cols=176 Identities=20% Similarity=0.166 Sum_probs=96.6
Q ss_pred HHHHHHhhcCCCCCeEEEEEEccCCCcHHHHHHHHHHHhcccc--c-ceEEEe-echhhh---------------ccCCh
Q 001458 5 CEKLRFLMDSGSSDVRMIGICGMGGLGKTTIARVVYDLISHEF--E-ASGFLD-NVREIS---------------SKGGL 65 (1074)
Q Consensus 5 ~~~l~~lL~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F--~-~~~~~~-~~~~~s---------------~~~~~ 65 (1074)
++.|...+..+ .-.+.+.++|+.|+||||+|+.+++.+.... . ..|=.+ .++.+. ...++
T Consensus 22 ~~~L~~~i~~~-r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~~~~~dvieidaas~~gv 100 (584)
T PRK14952 22 TEPLSSALDAG-RINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGPGSIDVVELDAASHGGV 100 (584)
T ss_pred HHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcccCCCceEEEeccccccCH
Confidence 45566666532 2256689999999999999999998654211 0 000000 000000 00111
Q ss_pred HHHHHHHHHHHhcccCCccccccchHHHHHh-hhCCCeEEEEEcCCCChH--HHHHHhcCCCCCCCCCEEEEEeCC-hhh
Q 001458 66 VSLQRQLLSQLLKLADNSIWNVFDGIDMLGS-RLQRKKVLLVIDDVVDVK--QLQSLAGNREWFGSGSRIIITSRD-EHL 141 (1074)
Q Consensus 66 ~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~-~L~~kr~LlVLDdv~~~~--~l~~l~~~~~~~~~gs~IiiTTR~-~~v 141 (1074)
.++ +++.. .+.. -..+++-++|+|+++... ..+.|+..+....+...+|++|.+ ..+
T Consensus 101 d~i-Rel~~------------------~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kl 161 (584)
T PRK14952 101 DDT-RELRD------------------RAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKV 161 (584)
T ss_pred HHH-HHHHH------------------HHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhh
Confidence 111 11111 1111 112455688999998653 455555544444456666665544 444
Q ss_pred hhh-cCCCceecCCCCChHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCCch-HHHHHHh
Q 001458 142 LKT-HGVDEVYKPHGLNYDEALQLFNMKAFKTYQPLQECVQLSARIIRYAGGLPL-ALEVLGS 202 (1074)
Q Consensus 142 ~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPL-al~~~g~ 202 (1074)
... ......|++..++.++..+.+.+.+-...... ..+....|++.++|.+- |+..+-.
T Consensus 162 l~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~i--~~~al~~Ia~~s~GdlR~aln~Ldq 222 (584)
T PRK14952 162 LPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVVV--DDAVYPLVIRAGGGSPRDTLSVLDQ 222 (584)
T ss_pred HHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 433 22346899999999999888887664332211 12456678888898774 4444433
No 124
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.60 E-value=1.5e-05 Score=81.18 Aligned_cols=232 Identities=23% Similarity=0.207 Sum_probs=134.9
Q ss_pred hhcCCCccEEEccCcCCcc-----CchhhhcCCCCCEEeccCCCCC----------ccccccccCCCCCCEEEecCCCCC
Q 001458 540 VEHMEHLSELHLEGTAIRG-----LPLSIELLSGLVLLNLKNCRSL----------EILPVTVSNLKCLRSLKLSGCSKL 604 (1074)
Q Consensus 540 l~~l~~L~~L~L~~~~i~~-----lp~~~~~l~~L~~L~L~~~~~~----------~~l~~~l~~l~~L~~L~Ls~~~~~ 604 (1074)
+..+..+..++|+||.|.. +...+.+-.+|+..+++.-... ..+...+.+||.|+..+||.|...
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg 105 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG 105 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence 3445555566666655544 3333444555555555543211 112234667888888888888776
Q ss_pred Cccch----hhcCCCCCCEEEcCCCcccccCc-----c---------hhccCCCCEeecCCCCCCccccc-----hhccc
Q 001458 605 KKFPE----IVRSMKDLSELFLDGTSIKEVPS-----S---------IELLTKLELLNLSDCKNLVRLPS-----SIIAL 661 (1074)
Q Consensus 605 ~~~p~----~~~~l~~L~~L~L~~~~l~~lp~-----~---------~~~l~~L~~L~L~~~~~l~~~~~-----~~~~l 661 (1074)
...|+ .+..-+.|++|.+++|.+..+.. . ...-|.|++.....|+.- ..+. .+..-
T Consensus 106 ~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle-ngs~~~~a~~l~sh 184 (388)
T COG5238 106 SEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE-NGSKELSAALLESH 184 (388)
T ss_pred cccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc-cCcHHHHHHHHHhh
Confidence 65554 45566788899998887764321 1 233477888888877642 2221 12223
Q ss_pred CCCCEEEccCCcCCCc-----CcccccCCCCccEEEcCCCCCCCCCCcccccccccccccccccCCCCCCCCCccEEecC
Q 001458 662 KSLKTLNLSGCFKLEN-----VPETLGQIESLEELDISGTAVPHSTSWYSYIPINLMRKSVALKLPSLSGLCSLRKLNLT 736 (1074)
Q Consensus 662 ~~L~~L~L~~c~~l~~-----~p~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls 736 (1074)
.+|+++.+..|.+-.. +...+..+.+|+.|||..|-++...+..- . ..+..++.|+.|.+.
T Consensus 185 ~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~L-----------a---~al~~W~~lrEL~ln 250 (388)
T COG5238 185 ENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYL-----------A---DALCEWNLLRELRLN 250 (388)
T ss_pred cCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHH-----------H---HHhcccchhhhcccc
Confidence 5788888888755432 12234567889999998887765332110 0 013445668888898
Q ss_pred CCCCCCCCCccccC-----CCCCCCeEecCCCcCc-------ccCccc-cccCCCCEeeccCC
Q 001458 737 DCNLMEGALPSDIG-----NLCSLKELYLSKNSFV-------SLPTSI-THLSKLLNIELEDC 786 (1074)
Q Consensus 737 ~~~~~~~~~p~~l~-----~l~~L~~L~Ls~n~l~-------~lp~~i-~~l~~L~~L~L~~c 786 (1074)
+|-++.......+. ..++|+.|...+|.+. ++|.-. ..+|-|..|.+.+|
T Consensus 251 DClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngN 313 (388)
T COG5238 251 DCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGN 313 (388)
T ss_pred chhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccC
Confidence 88776543333322 3577888888877433 233222 34566666666655
No 125
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.59 E-value=0.00089 Score=77.61 Aligned_cols=131 Identities=15% Similarity=0.125 Sum_probs=77.6
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHhcccccceEEEeechhhhccCChHHHHHHHHHHHhcccCCccccccchHHHHHhhhC
Q 001458 20 RMIGICGMGGLGKTTIARVVYDLISHEFEASGFLDNVREISSKGGLVSLQRQLLSQLLKLADNSIWNVFDGIDMLGSRLQ 99 (1074)
Q Consensus 20 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~ 99 (1074)
.-+.|+|+.|+|||+||+++++.+......++|+. ...+..++...+.. ...+..+..++
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~----------~~~f~~~~~~~l~~----------~~~~~f~~~~~ 201 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVR----------SELFTEHLVSAIRS----------GEMQRFRQFYR 201 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEee----------HHHHHHHHHHHHhc----------chHHHHHHHcc
Confidence 46789999999999999999998765444455554 12333344443211 01233444444
Q ss_pred CCeEEEEEcCCCChHH----HHHHhcCCCC-CCCCCEEEEEeCC-h--------hhhhhcCCCceecCCCCChHHHHHHH
Q 001458 100 RKKVLLVIDDVVDVKQ----LQSLAGNREW-FGSGSRIIITSRD-E--------HLLKTHGVDEVYKPHGLNYDEALQLF 165 (1074)
Q Consensus 100 ~kr~LlVLDdv~~~~~----l~~l~~~~~~-~~~gs~IiiTTR~-~--------~v~~~~~~~~~~~l~~L~~~ea~~Lf 165 (1074)
. .-+|++||++.... .+.+...++. ...|..||+||.. . .+...+.....+++.+++.++..+++
T Consensus 202 ~-~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL 280 (445)
T PRK12422 202 N-VDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFL 280 (445)
T ss_pred c-CCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHH
Confidence 3 34788899865421 1122111110 1245678888754 2 22222333467899999999999999
Q ss_pred HHhhhc
Q 001458 166 NMKAFK 171 (1074)
Q Consensus 166 ~~~a~~ 171 (1074)
.+++-.
T Consensus 281 ~~k~~~ 286 (445)
T PRK12422 281 ERKAEA 286 (445)
T ss_pred HHHHHH
Confidence 887743
No 126
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.58 E-value=0.00046 Score=79.43 Aligned_cols=185 Identities=16% Similarity=0.115 Sum_probs=94.7
Q ss_pred HHHHHHhhcCCCCCeEEEEEEccCCCcHHHHHHHHHHHhccc--ccceEEEeechhhhccCChHHHHHHHHHHH----hc
Q 001458 5 CEKLRFLMDSGSSDVRMIGICGMGGLGKTTIARVVYDLISHE--FEASGFLDNVREISSKGGLVSLQRQLLSQL----LK 78 (1074)
Q Consensus 5 ~~~l~~lL~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~--F~~~~~~~~~~~~s~~~~~~~l~~~ll~~l----~~ 78 (1074)
++.|...+..+ .-.+.+.++|+.|+||||+|+.+++.+... ....-|.... ....+.-...+++.... ..
T Consensus 25 ~~~L~~~~~~~-~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~---~~~c~~c~~c~~~~~~~~~n~~~ 100 (397)
T PRK14955 25 TRTIQNSLRMG-RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEV---TEPCGECESCRDFDAGTSLNISE 100 (397)
T ss_pred HHHHHHHHHhC-CcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccC---CCCCCCCHHHHHHhcCCCCCeEe
Confidence 34556666532 224568899999999999999999876431 1110011000 00000000111111000 00
Q ss_pred ccCCccccccchHHHHHhhh-----CCCeEEEEEcCCCChH--HHHHHhcCCCCCCCCCEEEEEeC-Chhhhhhc-CCCc
Q 001458 79 LADNSIWNVFDGIDMLGSRL-----QRKKVLLVIDDVVDVK--QLQSLAGNREWFGSGSRIIITSR-DEHLLKTH-GVDE 149 (1074)
Q Consensus 79 ~~~~~~~~~~~~~~~i~~~L-----~~kr~LlVLDdv~~~~--~l~~l~~~~~~~~~gs~IiiTTR-~~~v~~~~-~~~~ 149 (1074)
.........+ .+..+.+.+ .+++-++|+|+++... +++.+...+....+.+.+|++|. .+.+.... ....
T Consensus 101 ~~~~~~~~id-~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl~~tl~sR~~ 179 (397)
T PRK14955 101 FDAASNNSVD-DIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIPATIASRCQ 179 (397)
T ss_pred ecccccCCHH-HHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHhHHHHHHHHH
Confidence 0000000011 111222222 2456688999998654 45666554443345677666654 34443322 1234
Q ss_pred eecCCCCChHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCCchH
Q 001458 150 VYKPHGLNYDEALQLFNMKAFKTYQPLQECVQLSARIIRYAGGLPLA 196 (1074)
Q Consensus 150 ~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLa 196 (1074)
.+++++++.++..+.+...+-.... .-..+.+..+++.++|.+--
T Consensus 180 ~v~f~~l~~~ei~~~l~~~~~~~g~--~i~~~al~~l~~~s~g~lr~ 224 (397)
T PRK14955 180 RFNFKRIPLEEIQQQLQGICEAEGI--SVDADALQLIGRKAQGSMRD 224 (397)
T ss_pred HhhcCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHH
Confidence 6889999999988888776532211 11235677899999997743
No 127
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.57 E-value=0.0014 Score=76.37 Aligned_cols=136 Identities=16% Similarity=0.205 Sum_probs=73.6
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhcccc-----cceEEEeechhhhccCChHHHHHHHHHHHhcccCCccccccchHHH
Q 001458 19 VRMIGICGMGGLGKTTIARVVYDLISHEF-----EASGFLDNVREISSKGGLVSLQRQLLSQLLKLADNSIWNVFDGIDM 93 (1074)
Q Consensus 19 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F-----~~~~~~~~~~~~s~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~ 93 (1074)
.+-|.++|++|.|||++|+++++.+...+ ....|+. +... + ++.+..... ........+.
T Consensus 216 p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~-v~~~-------e----Ll~kyvGet---e~~ir~iF~~ 280 (512)
T TIGR03689 216 PKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLN-IKGP-------E----LLNKYVGET---ERQIRLIFQR 280 (512)
T ss_pred CcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEe-ccch-------h----hcccccchH---HHHHHHHHHH
Confidence 45689999999999999999999775542 2233442 2110 0 010000000 0000011112
Q ss_pred HHhh-hCCCeEEEEEcCCCChH---------H-----HHHHhcCCCCC--CCCCEEEEEeCChhhhh-hc----CCCcee
Q 001458 94 LGSR-LQRKKVLLVIDDVVDVK---------Q-----LQSLAGNREWF--GSGSRIIITSRDEHLLK-TH----GVDEVY 151 (1074)
Q Consensus 94 i~~~-L~~kr~LlVLDdv~~~~---------~-----l~~l~~~~~~~--~~gs~IiiTTR~~~v~~-~~----~~~~~~ 151 (1074)
.++. -.+++++|++|+++..- + +..+....+.. ..+..||.||...+... .. ..+..+
T Consensus 281 Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I 360 (512)
T TIGR03689 281 AREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESLDNVIVIGASNREDMIDPAILRPGRLDVKI 360 (512)
T ss_pred HHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccCCceEEEeccCChhhCCHhhcCccccceEE
Confidence 2221 13478999999997531 1 22333222211 13445555665443322 11 235578
Q ss_pred cCCCCChHHHHHHHHHhh
Q 001458 152 KPHGLNYDEALQLFNMKA 169 (1074)
Q Consensus 152 ~l~~L~~~ea~~Lf~~~a 169 (1074)
+++..+.+++.++|..+.
T Consensus 361 ~~~~Pd~e~r~~Il~~~l 378 (512)
T TIGR03689 361 RIERPDAEAAADIFSKYL 378 (512)
T ss_pred EeCCCCHHHHHHHHHHHh
Confidence 999999999999999876
No 128
>PF14516 AAA_35: AAA-like domain
Probab=97.56 E-value=0.0072 Score=67.74 Aligned_cols=180 Identities=15% Similarity=0.235 Sum_probs=101.7
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHhcccccceEEEeechhhhc--cCChHHHHHHHHHHHhcccCCc----------cccc
Q 001458 20 RMIGICGMGGLGKTTIARVVYDLISHEFEASGFLDNVREISS--KGGLVSLQRQLLSQLLKLADNS----------IWNV 87 (1074)
Q Consensus 20 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~--~~~~~~l~~~ll~~l~~~~~~~----------~~~~ 87 (1074)
..+.|.|+-.+|||+|...+.+.....=-.++++ ++..... ..+..+..+.+...+...-... ....
T Consensus 32 ~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~i-d~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~ 110 (331)
T PF14516_consen 32 SYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYI-DLQQLGSAIFSDLEQFLRWFCEEISRQLKLDEKLDEYWDEEIGSK 110 (331)
T ss_pred CEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEE-EeecCCCcccCCHHHHHHHHHHHHHHHcCCChhHHHHHHHhcCCh
Confidence 5789999999999999999998775442233344 3433322 2345555555554443222111 1111
Q ss_pred cchHHHHHhhh---CCCeEEEEEcCCCChHHH----HHHhcCC-CCCC-------CCC-E-EEEEe-CChhhhhh----c
Q 001458 88 FDGIDMLGSRL---QRKKVLLVIDDVVDVKQL----QSLAGNR-EWFG-------SGS-R-IIITS-RDEHLLKT----H 145 (1074)
Q Consensus 88 ~~~~~~i~~~L---~~kr~LlVLDdv~~~~~l----~~l~~~~-~~~~-------~gs-~-IiiTT-R~~~v~~~----~ 145 (1074)
......+.+.+ .+++++|++|+||..-.. ..+.+.+ .|.. ... + |++.+ +....... .
T Consensus 111 ~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~~~~~L~li~~~~t~~~~~~~~~~SPF 190 (331)
T PF14516_consen 111 ISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNPIWQKLRLILAGSTEDYIILDINQSPF 190 (331)
T ss_pred hhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCcccceEEEEEecCcccccccCCCCCCc
Confidence 12223343332 258999999999864321 1111110 0111 111 1 22222 21111111 1
Q ss_pred CCCceecCCCCChHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCCchHHHHHHhhcCC
Q 001458 146 GVDEVYKPHGLNYDEALQLFNMKAFKTYQPLQECVQLSARIIRYAGGLPLALEVLGSFLSG 206 (1074)
Q Consensus 146 ~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~g~~L~~ 206 (1074)
.+...+++++++.+|..+|...+... .. ....+++...++|+|--+..++..+..
T Consensus 191 NIg~~i~L~~Ft~~ev~~L~~~~~~~--~~----~~~~~~l~~~tgGhP~Lv~~~~~~l~~ 245 (331)
T PF14516_consen 191 NIGQPIELPDFTPEEVQELAQRYGLE--FS----QEQLEQLMDWTGGHPYLVQKACYLLVE 245 (331)
T ss_pred ccccceeCCCCCHHHHHHHHHhhhcc--CC----HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 33457899999999999999876422 11 122889999999999999999988865
No 129
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.53 E-value=0.00046 Score=74.75 Aligned_cols=131 Identities=15% Similarity=0.167 Sum_probs=68.5
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHHHhccc--ccceEEEeechhhhccCChHHHHHHHHHHHhcccCCccccccchHHHHH
Q 001458 18 DVRMIGICGMGGLGKTTIARVVYDLISHE--FEASGFLDNVREISSKGGLVSLQRQLLSQLLKLADNSIWNVFDGIDMLG 95 (1074)
Q Consensus 18 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~--F~~~~~~~~~~~~s~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~ 95 (1074)
...-+.++|++|+||||+|+.+++.+... -....++. + +. .+ +....... ....++
T Consensus 41 ~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~-~---~~----~~----l~~~~~g~----------~~~~~~ 98 (261)
T TIGR02881 41 QVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIE-V---ER----AD----LVGEYIGH----------TAQKTR 98 (261)
T ss_pred CcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEE-e---cH----HH----hhhhhccc----------hHHHHH
Confidence 35568899999999999999999864321 11112221 1 10 01 11111100 011111
Q ss_pred hhhCC-CeEEEEEcCCCCh----------HHHHHHhcCCCCCCCCCEEEEEeCChhhhh------hc--CCCceecCCCC
Q 001458 96 SRLQR-KKVLLVIDDVVDV----------KQLQSLAGNREWFGSGSRIIITSRDEHLLK------TH--GVDEVYKPHGL 156 (1074)
Q Consensus 96 ~~L~~-kr~LlVLDdv~~~----------~~l~~l~~~~~~~~~gs~IiiTTR~~~v~~------~~--~~~~~~~l~~L 156 (1074)
+.++. ..-+|++|+++.. ++++.+..........-.+|+++....... .. .....++++.+
T Consensus 99 ~~~~~a~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~~~~~~~~p~L~sRf~~~i~f~~~ 178 (261)
T TIGR02881 99 EVIKKALGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEMDYFLSLNPGLRSRFPISIDFPDY 178 (261)
T ss_pred HHHHhccCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcchhHHHHhcChHHHhccceEEEECCC
Confidence 11111 1248899999753 345555554433333335556654432211 11 11346788999
Q ss_pred ChHHHHHHHHHhhh
Q 001458 157 NYDEALQLFNMKAF 170 (1074)
Q Consensus 157 ~~~ea~~Lf~~~a~ 170 (1074)
+.++-.+++.+.+-
T Consensus 179 ~~~el~~Il~~~~~ 192 (261)
T TIGR02881 179 TVEELMEIAERMVK 192 (261)
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999987764
No 130
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.52 E-value=0.0029 Score=78.46 Aligned_cols=171 Identities=18% Similarity=0.139 Sum_probs=93.0
Q ss_pred HHHHHHhhcCCCCCeEEEEEEccCCCcHHHHHHHHHHHhccccc--c-eEEEe-echhhh---------------ccCCh
Q 001458 5 CEKLRFLMDSGSSDVRMIGICGMGGLGKTTIARVVYDLISHEFE--A-SGFLD-NVREIS---------------SKGGL 65 (1074)
Q Consensus 5 ~~~l~~lL~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~--~-~~~~~-~~~~~s---------------~~~~~ 65 (1074)
++.|...+..+ .-.+.+.++|+.|+||||+|+.+++.+..... . .|=.+ .++.+. ...++
T Consensus 24 ~~~L~~~i~~~-ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~dv~eidaas~~~V 102 (824)
T PRK07764 24 TEPLSTALDSG-RINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSLDVTEIDAASHGGV 102 (824)
T ss_pred HHHHHHHHHhC-CCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCCcEEEecccccCCH
Confidence 44566666532 22467899999999999999999986632110 0 00000 000000 00111
Q ss_pred HHHHHHHHHHHhcccCCccccccchHHHHHhhhCCCeEEEEEcCCCChH--HHHHHhcCCCCCCCCCEEEEEeCC-hhhh
Q 001458 66 VSLQRQLLSQLLKLADNSIWNVFDGIDMLGSRLQRKKVLLVIDDVVDVK--QLQSLAGNREWFGSGSRIIITSRD-EHLL 142 (1074)
Q Consensus 66 ~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~~kr~LlVLDdv~~~~--~l~~l~~~~~~~~~gs~IiiTTR~-~~v~ 142 (1074)
.++ +++...+ ...-..+++-++|||+++.+. ..+.|+..+..-...+.+|++|.+ ..+.
T Consensus 103 d~i-R~l~~~~-----------------~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~kLl 164 (824)
T PRK07764 103 DDA-RELRERA-----------------FFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDKVI 164 (824)
T ss_pred HHH-HHHHHHH-----------------HhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhh
Confidence 111 1111110 001123455578899998764 355555444433456666766644 3444
Q ss_pred hhc-CCCceecCCCCChHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCCchH
Q 001458 143 KTH-GVDEVYKPHGLNYDEALQLFNMKAFKTYQPLQECVQLSARIIRYAGGLPLA 196 (1074)
Q Consensus 143 ~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLa 196 (1074)
... .....|++..++.++..+++.+.+-..... ...+....|++.++|.+..
T Consensus 165 ~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~--id~eal~lLa~~sgGdlR~ 217 (824)
T PRK07764 165 GTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVP--VEPGVLPLVIRAGGGSVRD 217 (824)
T ss_pred HHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHH
Confidence 432 234689999999999888887755322211 1223456788888987743
No 131
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.52 E-value=0.0014 Score=75.10 Aligned_cols=167 Identities=17% Similarity=0.179 Sum_probs=91.7
Q ss_pred HHHHHHhhcCCCCCeEEEEEEccCCCcHHHHHHHHHHHhccc--------ccceEEEeechhhhccCChHHHHHHHHHHH
Q 001458 5 CEKLRFLMDSGSSDVRMIGICGMGGLGKTTIARVVYDLISHE--------FEASGFLDNVREISSKGGLVSLQRQLLSQL 76 (1074)
Q Consensus 5 ~~~l~~lL~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~--------F~~~~~~~~~~~~s~~~~~~~l~~~ll~~l 76 (1074)
++.+...+..+ .-.+.+.++|+.|+||||+|+.+++.+... |...++-. . .....+..+ .++++..+
T Consensus 26 ~~~l~~~i~~~-~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l--~-~~~~~~~~~-i~~l~~~~ 100 (367)
T PRK14970 26 TNTLLNAIENN-HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFEL--D-AASNNSVDD-IRNLIDQV 100 (367)
T ss_pred HHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEe--c-cccCCCHHH-HHHHHHHH
Confidence 45566666532 224688999999999999999998866431 22211110 0 001111111 11222221
Q ss_pred hcccCCccccccchHHHHHhhhCCCeEEEEEcCCCChH--HHHHHhcCCCCCCCCCEEEEEeCC-hhhhhh-cCCCceec
Q 001458 77 LKLADNSIWNVFDGIDMLGSRLQRKKVLLVIDDVVDVK--QLQSLAGNREWFGSGSRIIITSRD-EHLLKT-HGVDEVYK 152 (1074)
Q Consensus 77 ~~~~~~~~~~~~~~~~~i~~~L~~kr~LlVLDdv~~~~--~l~~l~~~~~~~~~gs~IiiTTR~-~~v~~~-~~~~~~~~ 152 (1074)
.. ....+++-++|+|+++... .++.+........+...+|++|.. +.+... ......++
T Consensus 101 ~~-----------------~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l~sr~~~v~ 163 (367)
T PRK14970 101 RI-----------------PPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSRCQIFD 163 (367)
T ss_pred hh-----------------ccccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHHHhcceeEe
Confidence 00 0112345579999997653 355554333222344566665533 333222 22234789
Q ss_pred CCCCChHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCCch
Q 001458 153 PHGLNYDEALQLFNMKAFKTYQPLQECVQLSARIIRYAGGLPL 195 (1074)
Q Consensus 153 l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPL 195 (1074)
+++++.++....+...+......- ..+.+..+++.++|.+-
T Consensus 164 ~~~~~~~~l~~~l~~~~~~~g~~i--~~~al~~l~~~~~gdlr 204 (367)
T PRK14970 164 FKRITIKDIKEHLAGIAVKEGIKF--EDDALHIIAQKADGALR 204 (367)
T ss_pred cCCccHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHhCCCCHH
Confidence 999999999988887775433211 12566778888888664
No 132
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.50 E-value=0.0016 Score=72.99 Aligned_cols=138 Identities=17% Similarity=0.240 Sum_probs=73.9
Q ss_pred HHHHHHHhhcCCCCCeEEEEEEccCCCcHHHHHHHHHHHhcccccceEEEeechhhhccCChHHHHHHHHHHHhcccCCc
Q 001458 4 RCEKLRFLMDSGSSDVRMIGICGMGGLGKTTIARVVYDLISHEFEASGFLDNVREISSKGGLVSLQRQLLSQLLKLADNS 83 (1074)
Q Consensus 4 ~~~~l~~lL~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~ll~~l~~~~~~~ 83 (1074)
-.+.+..++..+ .-..++.++|++|+||||+|+++++.....| .++. . +. .....+ ++.+......
T Consensus 29 ~~~~l~~~~~~~-~~~~~lll~G~~G~GKT~la~~l~~~~~~~~---~~i~-~---~~-~~~~~i-~~~l~~~~~~---- 94 (316)
T PHA02544 29 DKETFKSIVKKG-RIPNMLLHSPSPGTGKTTVAKALCNEVGAEV---LFVN-G---SD-CRIDFV-RNRLTRFAST---- 94 (316)
T ss_pred HHHHHHHHHhcC-CCCeEEEeeCcCCCCHHHHHHHHHHHhCccc---eEec-c---Cc-ccHHHH-HHHHHHHHHh----
Confidence 345666666532 2356788899999999999999998764322 2222 1 11 112211 1111111100
Q ss_pred cccccchHHHHHhhhCCCeEEEEEcCCCCh---HHHHHHhcCCCCCCCCCEEEEEeCChh-hhhh-cCCCceecCCCCCh
Q 001458 84 IWNVFDGIDMLGSRLQRKKVLLVIDDVVDV---KQLQSLAGNREWFGSGSRIIITSRDEH-LLKT-HGVDEVYKPHGLNY 158 (1074)
Q Consensus 84 ~~~~~~~~~~i~~~L~~kr~LlVLDdv~~~---~~l~~l~~~~~~~~~gs~IiiTTR~~~-v~~~-~~~~~~~~l~~L~~ 158 (1074)
..+.+.+-+||+||++.. +..+.+.........+.++|+||.... +... ......+.++..+.
T Consensus 95 ------------~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~~~i~~~~p~~ 162 (316)
T PHA02544 95 ------------VSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCRVIDFGVPTK 162 (316)
T ss_pred ------------hcccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhceEEEeCCCCH
Confidence 001134457889999866 222333322233346788999887543 1111 11223567777777
Q ss_pred HHHHHHHHH
Q 001458 159 DEALQLFNM 167 (1074)
Q Consensus 159 ~ea~~Lf~~ 167 (1074)
++..+++..
T Consensus 163 ~~~~~il~~ 171 (316)
T PHA02544 163 EEQIEMMKQ 171 (316)
T ss_pred HHHHHHHHH
Confidence 777766654
No 133
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.50 E-value=0.0012 Score=75.54 Aligned_cols=119 Identities=22% Similarity=0.217 Sum_probs=77.8
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhcccccceEEEeechhhhccCChHHHHHHHHHHHhcccCCccccccchHHHHHhhhCC
Q 001458 21 MIGICGMGGLGKTTIARVVYDLISHEFEASGFLDNVREISSKGGLVSLQRQLLSQLLKLADNSIWNVFDGIDMLGSRLQR 100 (1074)
Q Consensus 21 vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~~ 100 (1074)
++.|.|+-++||||+++.+....... .+++...........+ .+.+... ..+...
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~---~iy~~~~d~~~~~~~l----~d~~~~~---------------~~~~~~--- 93 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEE---IIYINFDDLRLDRIEL----LDLLRAY---------------IELKER--- 93 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcc---eEEEEecchhcchhhH----HHHHHHH---------------HHhhcc---
Confidence 99999999999999997777655444 4444322111111111 1112211 111111
Q ss_pred CeEEEEEcCCCChHHHHHHhcCCCCCCCCCEEEEEeCChhhhhh------cCCCceecCCCCChHHHHHHH
Q 001458 101 KKVLLVIDDVVDVKQLQSLAGNREWFGSGSRIIITSRDEHLLKT------HGVDEVYKPHGLNYDEALQLF 165 (1074)
Q Consensus 101 kr~LlVLDdv~~~~~l~~l~~~~~~~~~gs~IiiTTR~~~v~~~------~~~~~~~~l~~L~~~ea~~Lf 165 (1074)
++..++||.|.....|+.....+...++. +|+||+-+..+... .|....+++.+|+..|-..+-
T Consensus 94 ~~~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~~ 163 (398)
T COG1373 94 EKSYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKLK 163 (398)
T ss_pred CCceEEEecccCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhhc
Confidence 88999999999999999888776655666 89998887543322 244568899999999887643
No 134
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.49 E-value=0.0036 Score=75.15 Aligned_cols=184 Identities=17% Similarity=0.111 Sum_probs=92.8
Q ss_pred HHHHHHhhcCCCCCeEEEEEEccCCCcHHHHHHHHHHHhccc--ccceEEEeechhhhccCChHHHHHHHHHHHh---cc
Q 001458 5 CEKLRFLMDSGSSDVRMIGICGMGGLGKTTIARVVYDLISHE--FEASGFLDNVREISSKGGLVSLQRQLLSQLL---KL 79 (1074)
Q Consensus 5 ~~~l~~lL~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~--F~~~~~~~~~~~~s~~~~~~~l~~~ll~~l~---~~ 79 (1074)
++.|...+..+ .-.+.+.++|+.|+||||+|+.+++.+-.. .+...|..++. ...+.-...+.+...-. ..
T Consensus 25 ~~~L~~~i~~~-ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~---~~Cg~C~sC~~~~~g~~~n~~~ 100 (620)
T PRK14954 25 THTIQNSLRMD-RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVT---EPCGECESCRDFDAGTSLNISE 100 (620)
T ss_pred HHHHHHHHHcC-CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccC---CCCccCHHHHHHhccCCCCeEE
Confidence 44566656522 224668999999999999999999866321 11111111000 00000011111110000 00
Q ss_pred cCC-ccccccchHHHHHhhh-----CCCeEEEEEcCCCChH--HHHHHhcCCCCCCCCCEEEEEeC-Chhhhhh-cCCCc
Q 001458 80 ADN-SIWNVFDGIDMLGSRL-----QRKKVLLVIDDVVDVK--QLQSLAGNREWFGSGSRIIITSR-DEHLLKT-HGVDE 149 (1074)
Q Consensus 80 ~~~-~~~~~~~~~~~i~~~L-----~~kr~LlVLDdv~~~~--~l~~l~~~~~~~~~gs~IiiTTR-~~~v~~~-~~~~~ 149 (1074)
-+. ....+++ +..+.+.+ .+++-++|+|+++... ..+.|...+..-.+.+.+|++|. ...+... .....
T Consensus 101 ~d~~s~~~vd~-Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kLl~TI~SRc~ 179 (620)
T PRK14954 101 FDAASNNSVDD-IRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKIPATIASRCQ 179 (620)
T ss_pred ecccccCCHHH-HHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHHHhhce
Confidence 000 0000111 11222222 2445578999998764 35555544333234556555554 3444433 23356
Q ss_pred eecCCCCChHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCCch
Q 001458 150 VYKPHGLNYDEALQLFNMKAFKTYQPLQECVQLSARIIRYAGGLPL 195 (1074)
Q Consensus 150 ~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPL 195 (1074)
.+++..++.++....+.+.+-..... -..+.+..+++.++|..-
T Consensus 180 ~vef~~l~~~ei~~~L~~i~~~egi~--I~~eal~~La~~s~Gdlr 223 (620)
T PRK14954 180 RFNFKRIPLDEIQSQLQMICRAEGIQ--IDADALQLIARKAQGSMR 223 (620)
T ss_pred EEecCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHhCCCHH
Confidence 89999999999888887655332211 123456788999999554
No 135
>PRK08116 hypothetical protein; Validated
Probab=97.49 E-value=0.00033 Score=75.61 Aligned_cols=101 Identities=17% Similarity=0.162 Sum_probs=57.1
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHhcccccceEEEeechhhhccCChHHHHHHHHHHHhcccCCccccccchHHHHHhhhC
Q 001458 20 RMIGICGMGGLGKTTIARVVYDLISHEFEASGFLDNVREISSKGGLVSLQRQLLSQLLKLADNSIWNVFDGIDMLGSRLQ 99 (1074)
Q Consensus 20 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~ 99 (1074)
+.+.++|..|+|||.||.++++.+..+...++|+. ..++...+....... .......+.+.+.
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~----------~~~ll~~i~~~~~~~-------~~~~~~~~~~~l~ 177 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVN----------FPQLLNRIKSTYKSS-------GKEDENEIIRSLV 177 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE----------HHHHHHHHHHHHhcc-------ccccHHHHHHHhc
Confidence 45899999999999999999998765544455553 223333433332110 1111233445555
Q ss_pred CCeEEEEEcCCC--ChHHH--HHHhcCCC-CCCCCCEEEEEeCC
Q 001458 100 RKKVLLVIDDVV--DVKQL--QSLAGNRE-WFGSGSRIIITSRD 138 (1074)
Q Consensus 100 ~kr~LlVLDdv~--~~~~l--~~l~~~~~-~~~~gs~IiiTTR~ 138 (1074)
+-. ||||||+. ...+| +.+....+ ....|..+||||..
T Consensus 178 ~~d-lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~ 220 (268)
T PRK08116 178 NAD-LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNL 220 (268)
T ss_pred CCC-EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 444 89999993 22222 22221111 11356679999875
No 136
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.48 E-value=0.001 Score=63.57 Aligned_cols=23 Identities=39% Similarity=0.544 Sum_probs=21.2
Q ss_pred EEEEccCCCcHHHHHHHHHHHhc
Q 001458 22 IGICGMGGLGKTTIARVVYDLIS 44 (1074)
Q Consensus 22 v~I~G~gGiGKTtLA~~v~~~~~ 44 (1074)
|.|+|+.|+||||+|+.+++...
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~ 23 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG 23 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT
T ss_pred CEEECcCCCCeeHHHHHHHhhcc
Confidence 57999999999999999999875
No 137
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.48 E-value=8.9e-05 Score=55.12 Aligned_cols=33 Identities=33% Similarity=0.566 Sum_probs=16.7
Q ss_pred CCCeEecCCCcCcccCccccccCCCCEeeccCC
Q 001458 754 SLKELYLSKNSFVSLPTSITHLSKLLNIELEDC 786 (1074)
Q Consensus 754 ~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c 786 (1074)
+|++|+|++|+++.+|..+.+|++|+.|++++|
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N 34 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNN 34 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCC
Confidence 455555555555555544555555555555555
No 138
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.47 E-value=0.00029 Score=68.22 Aligned_cols=35 Identities=31% Similarity=0.356 Sum_probs=27.3
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHhcccccceEEEe
Q 001458 20 RMIGICGMGGLGKTTIARVVYDLISHEFEASGFLD 54 (1074)
Q Consensus 20 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 54 (1074)
+.+.|+|++|+||||+|++++..........+++.
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~ 37 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYID 37 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEEC
Confidence 47899999999999999999987765543344443
No 139
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=97.46 E-value=0.0022 Score=76.78 Aligned_cols=184 Identities=18% Similarity=0.120 Sum_probs=96.4
Q ss_pred HHHHHHHhhcCCCCCeEEEEEEccCCCcHHHHHHHHHHHhcccccce---EEEeechhhhccCChHHHHHHHHHHH----
Q 001458 4 RCEKLRFLMDSGSSDVRMIGICGMGGLGKTTIARVVYDLISHEFEAS---GFLDNVREISSKGGLVSLQRQLLSQL---- 76 (1074)
Q Consensus 4 ~~~~l~~lL~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~---~~~~~~~~~s~~~~~~~l~~~ll~~l---- 76 (1074)
-++.|...+..+ .-.+.+.++|+.|+||||+|+.+++.+....... .-+. ..+.-.-.+.+....
T Consensus 32 ~v~~L~~~~~~g-ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~-------~cg~c~~C~~i~~g~h~Dv 103 (598)
T PRK09111 32 MVRTLTNAFETG-RIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTID-------LCGVGEHCQAIMEGRHVDV 103 (598)
T ss_pred HHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccc-------cCcccHHHHHHhcCCCCce
Confidence 345566666533 2256789999999999999999998664322100 0000 000000111111100
Q ss_pred hcccCCccccccchHHHHHhhh-----CCCeEEEEEcCCCChH--HHHHHhcCCCCCCCCCEEEEEe-CChhhhhhc-CC
Q 001458 77 LKLADNSIWNVFDGIDMLGSRL-----QRKKVLLVIDDVVDVK--QLQSLAGNREWFGSGSRIIITS-RDEHLLKTH-GV 147 (1074)
Q Consensus 77 ~~~~~~~~~~~~~~~~~i~~~L-----~~kr~LlVLDdv~~~~--~l~~l~~~~~~~~~gs~IiiTT-R~~~v~~~~-~~ 147 (1074)
..........+++ +..+.+.+ .+++-++|+|+++... ..+.|...+..-.+.+.+|++| ....+.... ..
T Consensus 104 ~e~~a~s~~gvd~-IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~kll~tI~SR 182 (598)
T PRK09111 104 LEMDAASHTGVDD-IREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKVPVTVLSR 182 (598)
T ss_pred EEecccccCCHHH-HHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhhhhHHHHhh
Confidence 0000000001111 11111111 2345578999997664 3555554443334567776655 334444332 23
Q ss_pred CceecCCCCChHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCCchHHH
Q 001458 148 DEVYKPHGLNYDEALQLFNMKAFKTYQPLQECVQLSARIIRYAGGLPLALE 198 (1074)
Q Consensus 148 ~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~ 198 (1074)
...++++.++.++....+.+.+-+..... ..+....|++.++|.+.-+.
T Consensus 183 cq~~~f~~l~~~el~~~L~~i~~kegi~i--~~eAl~lIa~~a~Gdlr~al 231 (598)
T PRK09111 183 CQRFDLRRIEADVLAAHLSRIAAKEGVEV--EDEALALIARAAEGSVRDGL 231 (598)
T ss_pred eeEEEecCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHH
Confidence 45789999999999999988764332211 12556788999999875443
No 140
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.44 E-value=0.0024 Score=70.94 Aligned_cols=94 Identities=19% Similarity=0.190 Sum_probs=58.8
Q ss_pred CCeEEEEEcCCCChH--HHHHHhcCCCCCCCCCEEEEEeCCh-hhhhhc-CCCceecCCCCChHHHHHHHHHhhhcCCCC
Q 001458 100 RKKVLLVIDDVVDVK--QLQSLAGNREWFGSGSRIIITSRDE-HLLKTH-GVDEVYKPHGLNYDEALQLFNMKAFKTYQP 175 (1074)
Q Consensus 100 ~kr~LlVLDdv~~~~--~l~~l~~~~~~~~~gs~IiiTTR~~-~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~ 175 (1074)
+.|++ |+|+++.+. ....+...+.--.+++.+|+||.+. .++... .....+.+.+++.+++.+.+.... .. ..
T Consensus 106 ~~kv~-iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~-~~-~~ 182 (328)
T PRK05707 106 GRKVV-LIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQAL-PE-SD 182 (328)
T ss_pred CCeEE-EECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhc-cc-CC
Confidence 34555 679998754 3444443332223567777777664 444332 334678999999999999987653 11 11
Q ss_pred ChhHHHHHHHHHHHhCCCchHHHHH
Q 001458 176 LQECVQLSARIIRYAGGLPLALEVL 200 (1074)
Q Consensus 176 ~~~~~~~~~~i~~~~~GlPLal~~~ 200 (1074)
.+.+..++..++|.|+....+
T Consensus 183 ----~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 183 ----ERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred ----hHHHHHHHHHcCCCHHHHHHH
Confidence 233457789999999765544
No 141
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.43 E-value=0.0057 Score=74.02 Aligned_cols=183 Identities=17% Similarity=0.110 Sum_probs=96.8
Q ss_pred HHHHHHhhcCCCCCeEEEEEEccCCCcHHHHHHHHHHHhcccccceEEEeechhhhccCChHHHHHHHHHHHh----ccc
Q 001458 5 CEKLRFLMDSGSSDVRMIGICGMGGLGKTTIARVVYDLISHEFEASGFLDNVREISSKGGLVSLQRQLLSQLL----KLA 80 (1074)
Q Consensus 5 ~~~l~~lL~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~ll~~l~----~~~ 80 (1074)
++.|...+..+ .-.+.+.++|+.|+||||+|+.+++.+.......-+ ...+.-...+.+..... ...
T Consensus 25 ~~~L~~~i~~~-~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~--------~~c~~c~~c~~i~~~~~~d~~~i~ 95 (585)
T PRK14950 25 VQTLRNAIAEG-RVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKG--------RPCGTCEMCRAIAEGSAVDVIEMD 95 (585)
T ss_pred HHHHHHHHHhC-CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCC--------CCCccCHHHHHHhcCCCCeEEEEe
Confidence 44566666533 224677899999999999999999866321110000 00001111112111100 000
Q ss_pred CCccccccchHHHHHhhh-----CCCeEEEEEcCCCCh--HHHHHHhcCCCCCCCCCEEEEEeCC-hhhhhhc-CCCcee
Q 001458 81 DNSIWNVFDGIDMLGSRL-----QRKKVLLVIDDVVDV--KQLQSLAGNREWFGSGSRIIITSRD-EHLLKTH-GVDEVY 151 (1074)
Q Consensus 81 ~~~~~~~~~~~~~i~~~L-----~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~gs~IiiTTR~-~~v~~~~-~~~~~~ 151 (1074)
.......++ +..+.+.+ .+++-++|+|+++.. +..+.|...+..-.+...+|++|.+ ..+.... .....+
T Consensus 96 ~~~~~~vd~-ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll~tI~SR~~~i 174 (585)
T PRK14950 96 AASHTSVDD-AREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPATILSRCQRF 174 (585)
T ss_pred ccccCCHHH-HHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhhHHHHhcccee
Confidence 000011111 11122211 245668999999765 3456665444333456677766654 3333321 223578
Q ss_pred cCCCCChHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCCchHHHH
Q 001458 152 KPHGLNYDEALQLFNMKAFKTYQPLQECVQLSARIIRYAGGLPLALEV 199 (1074)
Q Consensus 152 ~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~ 199 (1074)
+++.++.++....+.+.+....... ..+.+..+++.++|.+..+..
T Consensus 175 ~f~~l~~~el~~~L~~~a~~egl~i--~~eal~~La~~s~Gdlr~al~ 220 (585)
T PRK14950 175 DFHRHSVADMAAHLRKIAAAEGINL--EPGALEAIARAATGSMRDAEN 220 (585)
T ss_pred eCCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHHH
Confidence 8999999999988887764432211 125577889999998865443
No 142
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.42 E-value=0.002 Score=70.37 Aligned_cols=129 Identities=15% Similarity=0.143 Sum_probs=69.7
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhccc--ccceEEEeechhhhccCChHHHHHHHHHHHhcccCCccccccchHHHHHhhh
Q 001458 21 MIGICGMGGLGKTTIARVVYDLISHE--FEASGFLDNVREISSKGGLVSLQRQLLSQLLKLADNSIWNVFDGIDMLGSRL 98 (1074)
Q Consensus 21 vv~I~G~gGiGKTtLA~~v~~~~~~~--F~~~~~~~~~~~~s~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L 98 (1074)
-|.++|++|+||||+|+.+++.+... .....|+. ++. . +++..+.... .......+.+ .
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~----v~~----~----~l~~~~~g~~------~~~~~~~~~~-a 120 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVS----VTR----D----DLVGQYIGHT------APKTKEILKR-A 120 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEE----ecH----H----HHhHhhcccc------hHHHHHHHHH-c
Confidence 58899999999999999988755322 11112332 110 1 1222221111 0011112222 2
Q ss_pred CCCeEEEEEcCCCCh-----------HHHHHHhcCCCCCCCCCEEEEEeCChhhhhhc--------CCCceecCCCCChH
Q 001458 99 QRKKVLLVIDDVVDV-----------KQLQSLAGNREWFGSGSRIIITSRDEHLLKTH--------GVDEVYKPHGLNYD 159 (1074)
Q Consensus 99 ~~kr~LlVLDdv~~~-----------~~l~~l~~~~~~~~~gs~IiiTTR~~~v~~~~--------~~~~~~~l~~L~~~ 159 (1074)
..-+|+||+++.. +..+.+.........+-+||+++......... .....+++++++.+
T Consensus 121 --~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~e 198 (284)
T TIGR02880 121 --MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEA 198 (284)
T ss_pred --cCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHH
Confidence 2358889999743 12344444333333556777776543221111 11357899999999
Q ss_pred HHHHHHHHhhh
Q 001458 160 EALQLFNMKAF 170 (1074)
Q Consensus 160 ea~~Lf~~~a~ 170 (1074)
|-.+++...+-
T Consensus 199 dl~~I~~~~l~ 209 (284)
T TIGR02880 199 ELLVIAGLMLK 209 (284)
T ss_pred HHHHHHHHHHH
Confidence 99999987763
No 143
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.38 E-value=0.0056 Score=71.83 Aligned_cols=172 Identities=15% Similarity=0.125 Sum_probs=96.0
Q ss_pred HHHHHHhhcCCCCCeEEEEEEccCCCcHHHHHHHHHHHhcc-cccc--eEEEe-echh-------------hhccCChHH
Q 001458 5 CEKLRFLMDSGSSDVRMIGICGMGGLGKTTIARVVYDLISH-EFEA--SGFLD-NVRE-------------ISSKGGLVS 67 (1074)
Q Consensus 5 ~~~l~~lL~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~-~F~~--~~~~~-~~~~-------------~s~~~~~~~ 67 (1074)
++.|...+..+ .-.++..++|+.|+||||+|+.+++.+-. .... .|..+ .++. .+...++.+
T Consensus 23 ~~~L~~~I~~g-rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv~eldaas~~gId~ 101 (535)
T PRK08451 23 SKTLSLALDNN-RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDIIEMDAASNRGIDD 101 (535)
T ss_pred HHHHHHHHHcC-CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeEEEeccccccCHHH
Confidence 45666666533 23567789999999999999999986531 1000 01110 0000 000111221
Q ss_pred HHHHHHHHHhcccCCccccccchHHHHHhhhCCCeEEEEEcCCCChH--HHHHHhcCCCCCCCCCEEEEEeCCh-hhhhh
Q 001458 68 LQRQLLSQLLKLADNSIWNVFDGIDMLGSRLQRKKVLLVIDDVVDVK--QLQSLAGNREWFGSGSRIIITSRDE-HLLKT 144 (1074)
Q Consensus 68 l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~~kr~LlVLDdv~~~~--~l~~l~~~~~~~~~gs~IiiTTR~~-~v~~~ 144 (1074)
+.. ++.... ..-..+++-++|+|+++... ..+.|+..+....+.+++|++|.+. .+...
T Consensus 102 IRe-lie~~~-----------------~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~~kL~~t 163 (535)
T PRK08451 102 IRE-LIEQTK-----------------YKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLPAT 163 (535)
T ss_pred HHH-HHHHHh-----------------hCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECChhhCchH
Confidence 111 111100 00012456688999998764 3555554444335677878777764 22222
Q ss_pred -cCCCceecCCCCChHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCCchHH
Q 001458 145 -HGVDEVYKPHGLNYDEALQLFNMKAFKTYQPLQECVQLSARIIRYAGGLPLAL 197 (1074)
Q Consensus 145 -~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal 197 (1074)
......+++.+++.++..+.+.+.+-...... ..+.+..|++.++|.+--+
T Consensus 164 I~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~i--~~~Al~~Ia~~s~GdlR~a 215 (535)
T PRK08451 164 ILSRTQHFRFKQIPQNSIISHLKTILEKEGVSY--EPEALEILARSGNGSLRDT 215 (535)
T ss_pred HHhhceeEEcCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCcHHHH
Confidence 12245889999999999988877664332211 2356778899999988443
No 144
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.37 E-value=0.0023 Score=72.96 Aligned_cols=152 Identities=16% Similarity=0.145 Sum_probs=82.3
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHHHhcccccceEEEeechhhhccCChHHHHHHHHHHHhcccCCccccccchHHHHHhh
Q 001458 18 DVRMIGICGMGGLGKTTIARVVYDLISHEFEASGFLDNVREISSKGGLVSLQRQLLSQLLKLADNSIWNVFDGIDMLGSR 97 (1074)
Q Consensus 18 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~ 97 (1074)
..+-|.++|++|.|||++|+++++.....|-. +. .+ . +.....+.. .....+.+...
T Consensus 178 ~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~---i~----~s------~----l~~k~~ge~------~~~lr~lf~~A 234 (398)
T PTZ00454 178 PPRGVLLYGPPGTGKTMLAKAVAHHTTATFIR---VV----GS------E----FVQKYLGEG------PRMVRDVFRLA 234 (398)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhcCCCEEE---Ee----hH------H----HHHHhcchh------HHHHHHHHHHH
Confidence 35779999999999999999999876544321 11 00 1 111110000 00001111222
Q ss_pred hCCCeEEEEEcCCCChH----------------HHHHHhcCCCCC--CCCCEEEEEeCChhhhhh-----cCCCceecCC
Q 001458 98 LQRKKVLLVIDDVVDVK----------------QLQSLAGNREWF--GSGSRIIITSRDEHLLKT-----HGVDEVYKPH 154 (1074)
Q Consensus 98 L~~kr~LlVLDdv~~~~----------------~l~~l~~~~~~~--~~gs~IiiTTR~~~v~~~-----~~~~~~~~l~ 154 (1074)
....+.+|++|+++..- .+..+....+.+ ..+..||.||........ ...+..++++
T Consensus 235 ~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~ 314 (398)
T PTZ00454 235 RENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFP 314 (398)
T ss_pred HhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhCCHHHcCCCcccEEEEeC
Confidence 23567899999987431 122222222211 245678888875433221 1235678999
Q ss_pred CCChHHHHHHHHHhhhcCCC-CChhHHHHHHHHHHHhCCCchH
Q 001458 155 GLNYDEALQLFNMKAFKTYQ-PLQECVQLSARIIRYAGGLPLA 196 (1074)
Q Consensus 155 ~L~~~ea~~Lf~~~a~~~~~-~~~~~~~~~~~i~~~~~GlPLa 196 (1074)
..+.++..++|..+.-+... ..-++ .++++.+.|..-|
T Consensus 315 ~P~~~~R~~Il~~~~~~~~l~~dvd~----~~la~~t~g~sga 353 (398)
T PTZ00454 315 LPDRRQKRLIFQTITSKMNLSEEVDL----EDFVSRPEKISAA 353 (398)
T ss_pred CcCHHHHHHHHHHHHhcCCCCcccCH----HHHHHHcCCCCHH
Confidence 99999999999876533221 12222 3456666666544
No 145
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.36 E-value=0.002 Score=69.67 Aligned_cols=160 Identities=19% Similarity=0.236 Sum_probs=93.9
Q ss_pred hhHHHHHHHhhcCCCCC-eEEEEEEccCCCcHHHHHHHHHHHhcccccceEEEeechhhhccCChHHHHHHHHHHHh-cc
Q 001458 2 DSRCEKLRFLMDSGSSD-VRMIGICGMGGLGKTTIARVVYDLISHEFEASGFLDNVREISSKGGLVSLQRQLLSQLL-KL 79 (1074)
Q Consensus 2 ~~~~~~l~~lL~~~~~~-~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~ll~~l~-~~ 79 (1074)
|+++..+.+++...+.. ...|.|+|-+|.|||.+.+++.+...- ..+|+. .-+......+.++|+.+.. ..
T Consensus 12 e~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~---~~vw~n----~~ecft~~~lle~IL~~~~~~d 84 (438)
T KOG2543|consen 12 ESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNL---ENVWLN----CVECFTYAILLEKILNKSQLAD 84 (438)
T ss_pred HHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcCC---cceeee----hHHhccHHHHHHHHHHHhccCC
Confidence 56788899998765443 456699999999999999999987632 346776 3345666777788887763 11
Q ss_pred cCCcc-----ccccchHHHHHh--hhC--CCeEEEEEcCCCChHHHHHH-----hcCCCCCCCCCEEEEEeCCh---hhh
Q 001458 80 ADNSI-----WNVFDGIDMLGS--RLQ--RKKVLLVIDDVVDVKQLQSL-----AGNREWFGSGSRIIITSRDE---HLL 142 (1074)
Q Consensus 80 ~~~~~-----~~~~~~~~~i~~--~L~--~kr~LlVLDdv~~~~~l~~l-----~~~~~~~~~gs~IiiTTR~~---~v~ 142 (1074)
.+... .+..+-+..+++ ... ++.++||||+++...+.+.. ............+|+++-.. .-.
T Consensus 85 ~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils~~~~e~~y~ 164 (438)
T KOG2543|consen 85 KDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILSAPSCEKQYL 164 (438)
T ss_pred CchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEEeccccHHHhh
Confidence 11111 111112222222 222 46899999999887653322 11111111223445554432 222
Q ss_pred hhcCCC--ceecCCCCChHHHHHHHHHh
Q 001458 143 KTHGVD--EVYKPHGLNYDEALQLFNMK 168 (1074)
Q Consensus 143 ~~~~~~--~~~~l~~L~~~ea~~Lf~~~ 168 (1074)
..+|.. .++..+.-+.+|-.+++.+.
T Consensus 165 ~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 165 INTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred cccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 223433 24567788889998888654
No 146
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.32 E-value=0.0097 Score=69.87 Aligned_cols=178 Identities=14% Similarity=0.088 Sum_probs=92.4
Q ss_pred HHHHHHhhcCCCCCeEEEEEEccCCCcHHHHHHHHHHHhccc---c--cceEEEeechhhhcc--CChHHHHHHHHHHHh
Q 001458 5 CEKLRFLMDSGSSDVRMIGICGMGGLGKTTIARVVYDLISHE---F--EASGFLDNVREISSK--GGLVSLQRQLLSQLL 77 (1074)
Q Consensus 5 ~~~l~~lL~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~---F--~~~~~~~~~~~~s~~--~~~~~l~~~ll~~l~ 77 (1074)
++.|...+..+ .-.+...++|+.|+||||+|+.++..+... . ++.. -.++..+... .++.
T Consensus 25 ~~~L~~~i~~~-~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~-c~nc~~i~~g~~~d~~----------- 91 (486)
T PRK14953 25 VRILKNAVKLQ-RVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGK-CENCVEIDKGSFPDLI----------- 91 (486)
T ss_pred HHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCc-cHHHHHHhcCCCCcEE-----------
Confidence 45566666532 235667889999999999999999865311 0 0100 0011111000 0000
Q ss_pred cccCCccccccchHHHHHhh-----hCCCeEEEEEcCCCChH--HHHHHhcCCCCCCCCCEEEEEeCC-hhhhhh-cCCC
Q 001458 78 KLADNSIWNVFDGIDMLGSR-----LQRKKVLLVIDDVVDVK--QLQSLAGNREWFGSGSRIIITSRD-EHLLKT-HGVD 148 (1074)
Q Consensus 78 ~~~~~~~~~~~~~~~~i~~~-----L~~kr~LlVLDdv~~~~--~l~~l~~~~~~~~~gs~IiiTTR~-~~v~~~-~~~~ 148 (1074)
..........+ .++.+.+. ..+++-++|+|+++... ..+.+...+....+...+|++|.+ ..+... ....
T Consensus 92 eidaas~~gvd-~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~tt~~~kl~~tI~SRc 170 (486)
T PRK14953 92 EIDAASNRGID-DIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTEYDKIPPTILSRC 170 (486)
T ss_pred EEeCccCCCHH-HHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEECCHHHHHHHHHHhc
Confidence 00000000000 01122221 13566799999998653 355555444433445666665543 333322 1223
Q ss_pred ceecCCCCChHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCCchHHH
Q 001458 149 EVYKPHGLNYDEALQLFNMKAFKTYQPLQECVQLSARIIRYAGGLPLALE 198 (1074)
Q Consensus 149 ~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~ 198 (1074)
..+.+.+++.++....+...+-..... -..+.+..+++.++|.+-.+.
T Consensus 171 ~~i~f~~ls~~el~~~L~~i~k~egi~--id~~al~~La~~s~G~lr~al 218 (486)
T PRK14953 171 QRFIFSKPTKEQIKEYLKRICNEEKIE--YEEKALDLLAQASEGGMRDAA 218 (486)
T ss_pred eEEEcCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHH
Confidence 578999999999888888766432211 122456678888888765443
No 147
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.32 E-value=0.0055 Score=72.42 Aligned_cols=131 Identities=13% Similarity=0.224 Sum_probs=79.0
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHhcccc--cceEEEeechhhhccCChHHHHHHHHHHHhcccCCccccccchHHHHHhh
Q 001458 20 RMIGICGMGGLGKTTIARVVYDLISHEF--EASGFLDNVREISSKGGLVSLQRQLLSQLLKLADNSIWNVFDGIDMLGSR 97 (1074)
Q Consensus 20 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F--~~~~~~~~~~~~s~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~ 97 (1074)
..+.|||..|.|||.|++++++.....+ ..+.|+. ..++..++...+.. .....++++
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yit----------aeef~~el~~al~~----------~~~~~f~~~ 374 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVS----------SEEFTNEFINSIRD----------GKGDSFRRR 374 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee----------HHHHHHHHHHHHHh----------ccHHHHHHH
Confidence 3489999999999999999999775543 2334543 22333444433211 012334444
Q ss_pred hCCCeEEEEEcCCCChH---HH-HHHhcCCC-CCCCCCEEEEEeCCh---------hhhhhcCCCceecCCCCChHHHHH
Q 001458 98 LQRKKVLLVIDDVVDVK---QL-QSLAGNRE-WFGSGSRIIITSRDE---------HLLKTHGVDEVYKPHGLNYDEALQ 163 (1074)
Q Consensus 98 L~~kr~LlVLDdv~~~~---~l-~~l~~~~~-~~~~gs~IiiTTR~~---------~v~~~~~~~~~~~l~~L~~~ea~~ 163 (1074)
+++- =+|||||++... .+ +.+...++ ....|..|||||+.. .+...+...-+++++..+.+.-.+
T Consensus 375 y~~~-DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~a 453 (617)
T PRK14086 375 YREM-DILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIA 453 (617)
T ss_pred hhcC-CEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHH
Confidence 4433 478889996542 11 12211111 113466788888752 233334455688999999999999
Q ss_pred HHHHhhhc
Q 001458 164 LFNMKAFK 171 (1074)
Q Consensus 164 Lf~~~a~~ 171 (1074)
++.+++-.
T Consensus 454 IL~kka~~ 461 (617)
T PRK14086 454 ILRKKAVQ 461 (617)
T ss_pred HHHHHHHh
Confidence 99988744
No 148
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.30 E-value=0.00094 Score=70.05 Aligned_cols=168 Identities=15% Similarity=0.165 Sum_probs=97.5
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHHHHhc--ccccceEEEeechhhhccCChHHHHHHH--HHHHhcccCCccccccchHH
Q 001458 17 SDVRMIGICGMGGLGKTTIARVVYDLIS--HEFEASGFLDNVREISSKGGLVSLQRQL--LSQLLKLADNSIWNVFDGID 92 (1074)
Q Consensus 17 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~--~~F~~~~~~~~~~~~s~~~~~~~l~~~l--l~~l~~~~~~~~~~~~~~~~ 92 (1074)
.+......+|++|.|||+-|++++..+- +-|.+++-=.| +|...|..-+...+ ..++.....
T Consensus 55 ~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~ln---aSderGisvvr~Kik~fakl~~~~~----------- 120 (346)
T KOG0989|consen 55 RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELN---ASDERGISVVREKIKNFAKLTVLLK----------- 120 (346)
T ss_pred cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhc---ccccccccchhhhhcCHHHHhhccc-----------
Confidence 4567789999999999999999987553 34544432111 22222222111110 111100000
Q ss_pred HHHhhhCCCe-EEEEEcCCCChH--HHHHHhcCCCCCCCCCEEEEEeCC-hhhhhhc-CCCceecCCCCChHHHHHHHHH
Q 001458 93 MLGSRLQRKK-VLLVIDDVVDVK--QLQSLAGNREWFGSGSRIIITSRD-EHLLKTH-GVDEVYKPHGLNYDEALQLFNM 167 (1074)
Q Consensus 93 ~i~~~L~~kr-~LlVLDdv~~~~--~l~~l~~~~~~~~~gs~IiiTTR~-~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~ 167 (1074)
..... ..++ =.+|||+++.+. .|..+......+...+|.|..+.. ..+.... .....|..++|.+++...-+..
T Consensus 121 ~~~~~-~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~SRC~KfrFk~L~d~~iv~rL~~ 199 (346)
T KOG0989|consen 121 RSDGY-PCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVSRCQKFRFKKLKDEDIVDRLEK 199 (346)
T ss_pred cccCC-CCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHhhHHHhcCCCcchHHHHHHHHH
Confidence 00000 0122 478899999875 488887776666777777665554 3322221 2234789999999999999988
Q ss_pred hhhcCCCCChhHHHHHHHHHHHhCCC-chHHHHHH
Q 001458 168 KAFKTYQPLQECVQLSARIIRYAGGL-PLALEVLG 201 (1074)
Q Consensus 168 ~a~~~~~~~~~~~~~~~~i~~~~~Gl-PLal~~~g 201 (1074)
.|-+..-+.+ .+..+.|+++++|- --|+.++-
T Consensus 200 Ia~~E~v~~d--~~al~~I~~~S~GdLR~Ait~Lq 232 (346)
T KOG0989|consen 200 IASKEGVDID--DDALKLIAKISDGDLRRAITTLQ 232 (346)
T ss_pred HHHHhCCCCC--HHHHHHHHHHcCCcHHHHHHHHH
Confidence 8855443322 35677889999884 34444443
No 149
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.30 E-value=0.0028 Score=76.84 Aligned_cols=111 Identities=16% Similarity=0.000 Sum_probs=56.5
Q ss_pred HHHHHhhhCCCeEEEEEcCCCChH--HHHHHhcCCCCCCCCCEEEE--EeCChhh-hhhc-CCCceecCCCCChHHHHHH
Q 001458 91 IDMLGSRLQRKKVLLVIDDVVDVK--QLQSLAGNREWFGSGSRIII--TSRDEHL-LKTH-GVDEVYKPHGLNYDEALQL 164 (1074)
Q Consensus 91 ~~~i~~~L~~kr~LlVLDdv~~~~--~l~~l~~~~~~~~~gs~Iii--TTR~~~v-~~~~-~~~~~~~l~~L~~~ea~~L 164 (1074)
+..+.+.+.++++.++-|+.|..+ .|+.+...+....+...|+| ||++... .... .....+.+.+++.+|.+++
T Consensus 282 Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~I 361 (615)
T TIGR02903 282 QNKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALI 361 (615)
T ss_pred HHHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHH
Confidence 445555555666666655444322 24444333332234444555 5665431 1111 1223667889999999999
Q ss_pred HHHhhhcCCCCChhHHHHHHHHHHHhCCCchHHHHHHhh
Q 001458 165 FNMKAFKTYQPLQECVQLSARIIRYAGGLPLALEVLGSF 203 (1074)
Q Consensus 165 f~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~g~~ 203 (1074)
+.+.+-.....- -.++...|.+++..-+-|+..++..
T Consensus 362 l~~~a~~~~v~l--s~eal~~L~~ys~~gRraln~L~~~ 398 (615)
T TIGR02903 362 VLNAAEKINVHL--AAGVEELIARYTIEGRKAVNILADV 398 (615)
T ss_pred HHHHHHHcCCCC--CHHHHHHHHHCCCcHHHHHHHHHHH
Confidence 998764321111 1234455555554445555555433
No 150
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.29 E-value=0.0044 Score=74.73 Aligned_cols=180 Identities=17% Similarity=0.147 Sum_probs=94.5
Q ss_pred HHHHHHhhcCCCCCeEEEEEEccCCCcHHHHHHHHHHHhcccccceEEEeechhhhc----cCChHHHHHHHHHHHhccc
Q 001458 5 CEKLRFLMDSGSSDVRMIGICGMGGLGKTTIARVVYDLISHEFEASGFLDNVREISS----KGGLVSLQRQLLSQLLKLA 80 (1074)
Q Consensus 5 ~~~l~~lL~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~----~~~~~~l~~~ll~~l~~~~ 80 (1074)
++.|...+..+ .-.+.+.++|+.|+||||+|+.+++.+-..-....+- .+..... ..++ ....
T Consensus 27 v~~L~~aI~~~-rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~-pC~~C~~~~~~~~Dv-----------ieid 93 (725)
T PRK07133 27 VQTLKNIIKSN-KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLE-PCQECIENVNNSLDI-----------IEMD 93 (725)
T ss_pred HHHHHHHHHcC-CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCC-chhHHHHhhcCCCcE-----------EEEe
Confidence 45566666533 2356778999999999999999998653210000000 0000000 0000 0000
Q ss_pred CCccccccchHHHHHhhh-----CCCeEEEEEcCCCChH--HHHHHhcCCCCCCCCCEEEEEe-CChhhhhh-cCCCcee
Q 001458 81 DNSIWNVFDGIDMLGSRL-----QRKKVLLVIDDVVDVK--QLQSLAGNREWFGSGSRIIITS-RDEHLLKT-HGVDEVY 151 (1074)
Q Consensus 81 ~~~~~~~~~~~~~i~~~L-----~~kr~LlVLDdv~~~~--~l~~l~~~~~~~~~gs~IiiTT-R~~~v~~~-~~~~~~~ 151 (1074)
....... +.++.+.+.+ .+++-++|+|+++... .+..|+..+..-.+...+|++| +...+... ......+
T Consensus 94 aasn~~v-d~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~TI~SRcq~i 172 (725)
T PRK07133 94 AASNNGV-DEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLTILSRVQRF 172 (725)
T ss_pred ccccCCH-HHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhHHHHhhceeE
Confidence 0000001 0111222222 2466688999997653 4556655443333455555554 44445433 2334589
Q ss_pred cCCCCChHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCCch-HHHHH
Q 001458 152 KPHGLNYDEALQLFNMKAFKTYQPLQECVQLSARIIRYAGGLPL-ALEVL 200 (1074)
Q Consensus 152 ~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPL-al~~~ 200 (1074)
++.+++.++..+.+...+-...... ..+.+..+++.++|.+- |+..+
T Consensus 173 eF~~L~~eeI~~~L~~il~kegI~i--d~eAl~~LA~lS~GslR~AlslL 220 (725)
T PRK07133 173 NFRRISEDEIVSRLEFILEKENISY--EKNALKLIAKLSSGSLRDALSIA 220 (725)
T ss_pred EccCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHHHHH
Confidence 9999999999988887653322111 12456788899988664 44443
No 151
>CHL00181 cbbX CbbX; Provisional
Probab=97.28 E-value=0.006 Score=66.63 Aligned_cols=131 Identities=17% Similarity=0.172 Sum_probs=71.4
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHhccc-c-cceEEEeechhhhccCChHHHHHHHHHHHhcccCCccccccchHHHHHhh
Q 001458 20 RMIGICGMGGLGKTTIARVVYDLISHE-F-EASGFLDNVREISSKGGLVSLQRQLLSQLLKLADNSIWNVFDGIDMLGSR 97 (1074)
Q Consensus 20 ~vv~I~G~gGiGKTtLA~~v~~~~~~~-F-~~~~~~~~~~~~s~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~ 97 (1074)
..+.++|++|+||||+|+.+++..... + ...-|+. ++ .. .+........ .......+..
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~----v~----~~----~l~~~~~g~~------~~~~~~~l~~- 120 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLT----VT----RD----DLVGQYIGHT------APKTKEVLKK- 120 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEE----ec----HH----HHHHHHhccc------hHHHHHHHHH-
Confidence 347899999999999999998854221 1 1111222 11 11 1222221111 0011112222
Q ss_pred hCCCeEEEEEcCCCCh-----------HHHHHHhcCCCCCCCCCEEEEEeCChhhhhhc--------CCCceecCCCCCh
Q 001458 98 LQRKKVLLVIDDVVDV-----------KQLQSLAGNREWFGSGSRIIITSRDEHLLKTH--------GVDEVYKPHGLNY 158 (1074)
Q Consensus 98 L~~kr~LlVLDdv~~~-----------~~l~~l~~~~~~~~~gs~IiiTTR~~~v~~~~--------~~~~~~~l~~L~~ 158 (1074)
. ..-+|++|+++.. +..+.+.........+.+||+++....+.... .....+++++++.
T Consensus 121 a--~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~ 198 (287)
T CHL00181 121 A--MGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTP 198 (287)
T ss_pred c--cCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCH
Confidence 1 2248899999753 23444444333334556777777654332111 1245789999999
Q ss_pred HHHHHHHHHhhhc
Q 001458 159 DEALQLFNMKAFK 171 (1074)
Q Consensus 159 ~ea~~Lf~~~a~~ 171 (1074)
+|..+++...+-+
T Consensus 199 ~el~~I~~~~l~~ 211 (287)
T CHL00181 199 EELLQIAKIMLEE 211 (287)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999887643
No 152
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.28 E-value=0.003 Score=67.81 Aligned_cols=164 Identities=16% Similarity=0.280 Sum_probs=97.8
Q ss_pred hhHHHHHHHhhcC-----------CCCCeEEEEEEccCCCcHHHHHHHHHHHhcccccceEEEeechhhhccCChHHHHH
Q 001458 2 DSRCEKLRFLMDS-----------GSSDVRMIGICGMGGLGKTTIARVVYDLISHEFEASGFLDNVREISSKGGLVSLQR 70 (1074)
Q Consensus 2 ~~~~~~l~~lL~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~ 70 (1074)
|..+++|++.... +-+-.+=|.+||++|.|||-||++|+++....| +..+. .
T Consensus 157 ~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtF-----Irvvg------------S 219 (406)
T COG1222 157 DEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATF-----IRVVG------------S 219 (406)
T ss_pred HHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceE-----EEecc------------H
Confidence 4566666665432 222355689999999999999999999876554 33221 1
Q ss_pred HHHHHHhcccCCccccccchHHHHHhhh----CCCeEEEEEcCCCChH--------------H--HHHHhcCCCCCC--C
Q 001458 71 QLLSQLLKLADNSIWNVFDGIDMLGSRL----QRKKVLLVIDDVVDVK--------------Q--LQSLAGNREWFG--S 128 (1074)
Q Consensus 71 ~ll~~l~~~~~~~~~~~~~~~~~i~~~L----~~kr~LlVLDdv~~~~--------------~--l~~l~~~~~~~~--~ 128 (1074)
++.++..+ ++..++++.. ......|++|.+|... | +-+|+..++-|. .
T Consensus 220 ElVqKYiG----------EGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~ 289 (406)
T COG1222 220 ELVQKYIG----------EGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRG 289 (406)
T ss_pred HHHHHHhc----------cchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCC
Confidence 23333222 2334444333 2467899999987431 1 333444444443 3
Q ss_pred CCEEEEEeCChhhh-----hhcCCCceecCCCCChHHHHHHHHHhhhcCCC-CChhHHHHHHHHHHHhCCCchH
Q 001458 129 GSRIIITSRDEHLL-----KTHGVDEVYKPHGLNYDEALQLFNMKAFKTYQ-PLQECVQLSARIIRYAGGLPLA 196 (1074)
Q Consensus 129 gs~IiiTTR~~~v~-----~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~-~~~~~~~~~~~i~~~~~GlPLa 196 (1074)
.-+||..|.-.+++ .--..+..++++.-+.+.-.++|.-|+-+-.- ..-+++ .+++.+.|.-=|
T Consensus 290 nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e----~la~~~~g~sGA 359 (406)
T COG1222 290 NVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLE----LLARLTEGFSGA 359 (406)
T ss_pred CeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHH----HHHHhcCCCchH
Confidence 45888877654433 22244778999988888888999888755332 222333 466667766544
No 153
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.28 E-value=0.004 Score=75.19 Aligned_cols=183 Identities=16% Similarity=0.099 Sum_probs=94.5
Q ss_pred HHHHHHHhhcCCCCCeEEEEEEccCCCcHHHHHHHHHHHhcccc-cceEEEeechhhhccCChHHHHHHHHHHHhccc-C
Q 001458 4 RCEKLRFLMDSGSSDVRMIGICGMGGLGKTTIARVVYDLISHEF-EASGFLDNVREISSKGGLVSLQRQLLSQLLKLA-D 81 (1074)
Q Consensus 4 ~~~~l~~lL~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F-~~~~~~~~~~~~s~~~~~~~l~~~ll~~l~~~~-~ 81 (1074)
-++.|..++..+. -.+.+.++|+.|+||||+|+.+++.+.... .... ....+.-+..+.+.......- .
T Consensus 24 i~~~L~~~l~~~r-l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~--------~~~Cg~C~~C~~i~~g~h~D~~e 94 (620)
T PRK14948 24 IATTLKNALISNR-IAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPT--------PEPCGKCELCRAIAAGNALDVIE 94 (620)
T ss_pred HHHHHHHHHHcCC-CCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCC--------CCCCcccHHHHHHhcCCCccEEE
Confidence 3455666665332 246678999999999999999998664321 1000 000011111111111100000 0
Q ss_pred CccccccchHHHHHh---hh-----CCCeEEEEEcCCCChH--HHHHHhcCCCCCCCCCEEEEEeCC-hhhhhhc-CCCc
Q 001458 82 NSIWNVFDGIDMLGS---RL-----QRKKVLLVIDDVVDVK--QLQSLAGNREWFGSGSRIIITSRD-EHLLKTH-GVDE 149 (1074)
Q Consensus 82 ~~~~~~~~~~~~i~~---~L-----~~kr~LlVLDdv~~~~--~l~~l~~~~~~~~~gs~IiiTTR~-~~v~~~~-~~~~ 149 (1074)
.. .....+++.+++ .+ .+++-++|+|+++.+. ..+.|...+..-.....+|++|.+ ..+.... ....
T Consensus 95 i~-~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llpTIrSRc~ 173 (620)
T PRK14948 95 ID-AASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTIISRCQ 173 (620)
T ss_pred Ee-ccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhHHHHhhee
Confidence 00 000011111111 11 2455688999998763 455555444322344555555544 3343332 2345
Q ss_pred eecCCCCChHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCCchHHH
Q 001458 150 VYKPHGLNYDEALQLFNMKAFKTYQPLQECVQLSARIIRYAGGLPLALE 198 (1074)
Q Consensus 150 ~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~ 198 (1074)
.+++..++.++....+.+.+-...... ..+.+..++++++|.+..+.
T Consensus 174 ~~~f~~l~~~ei~~~L~~ia~kegi~i--s~~al~~La~~s~G~lr~A~ 220 (620)
T PRK14948 174 RFDFRRIPLEAMVQHLSEIAEKESIEI--EPEALTLVAQRSQGGLRDAE 220 (620)
T ss_pred EEEecCCCHHHHHHHHHHHHHHhCCCC--CHHHHHHHHHHcCCCHHHHH
Confidence 788889999998888887664322111 12457788899999875443
No 154
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.27 E-value=0.00026 Score=52.66 Aligned_cols=40 Identities=30% Similarity=0.538 Sum_probs=34.2
Q ss_pred CCccEEecCCCCCCCCCCccccCCCCCCCeEecCCCcCcccC
Q 001458 728 CSLRKLNLTDCNLMEGALPSDIGNLCSLKELYLSKNSFVSLP 769 (1074)
Q Consensus 728 ~~L~~L~Ls~~~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~lp 769 (1074)
++|++|++++|++. .+|..++.|++|+.|++++|+++.+|
T Consensus 1 ~~L~~L~l~~N~i~--~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQIT--DLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-S--SHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCCCCc--ccCchHhCCCCCCEEEecCCCCCCCc
Confidence 47999999999997 48878999999999999999998775
No 155
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.23 E-value=0.002 Score=72.29 Aligned_cols=160 Identities=18% Similarity=0.172 Sum_probs=93.9
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhcccccceEEEeechhhhccCChHHHHHHHHHHHhcccCCccccccchHHHHHhhh
Q 001458 19 VRMIGICGMGGLGKTTIARVVYDLISHEFEASGFLDNVREISSKGGLVSLQRQLLSQLLKLADNSIWNVFDGIDMLGSRL 98 (1074)
Q Consensus 19 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L 98 (1074)
...+.|||..|.|||-|++++.+......+...++. + .......++...+.. ..++..++..
T Consensus 113 ~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y----~----~se~f~~~~v~a~~~----------~~~~~Fk~~y 174 (408)
T COG0593 113 YNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVY----L----TSEDFTNDFVKALRD----------NEMEKFKEKY 174 (408)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEe----c----cHHHHHHHHHHHHHh----------hhHHHHHHhh
Confidence 567999999999999999999998877776443332 1 112233334433321 2345666666
Q ss_pred CCCeEEEEEcCCCChHH----HHHHhcCCC-CCCCCCEEEEEeCC---------hhhhhhcCCCceecCCCCChHHHHHH
Q 001458 99 QRKKVLLVIDDVVDVKQ----LQSLAGNRE-WFGSGSRIIITSRD---------EHLLKTHGVDEVYKPHGLNYDEALQL 164 (1074)
Q Consensus 99 ~~kr~LlVLDdv~~~~~----l~~l~~~~~-~~~~gs~IiiTTR~---------~~v~~~~~~~~~~~l~~L~~~ea~~L 164 (1074)
.-=++++||++-... -+++...+. ....|-.||+|++. .++...++..-++++.+++.+....+
T Consensus 175 --~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~ai 252 (408)
T COG0593 175 --SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAI 252 (408)
T ss_pred --ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHH
Confidence 334788999864321 112211111 12345589999864 23334445567899999999999999
Q ss_pred HHHhhhcCC-C-CChhHHHHHHHHHHHhCCCchHHH
Q 001458 165 FNMKAFKTY-Q-PLQECVQLSARIIRYAGGLPLALE 198 (1074)
Q Consensus 165 f~~~a~~~~-~-~~~~~~~~~~~i~~~~~GlPLal~ 198 (1074)
+.+++-... . +.+-..-+++++-+-.+-+.-|+.
T Consensus 253 L~kka~~~~~~i~~ev~~~la~~~~~nvReLegaL~ 288 (408)
T COG0593 253 LRKKAEDRGIEIPDEVLEFLAKRLDRNVRELEGALN 288 (408)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHhhccHHHHHHHHH
Confidence 998764332 2 333334444444443333444443
No 156
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.20 E-value=0.015 Score=67.76 Aligned_cols=184 Identities=17% Similarity=0.149 Sum_probs=94.2
Q ss_pred HHHHHHHhhcCCCCCeEEEEEEccCCCcHHHHHHHHHHHhcccc---c-ceEEE-eechhhhccCChHHHHHHHHHHHhc
Q 001458 4 RCEKLRFLMDSGSSDVRMIGICGMGGLGKTTIARVVYDLISHEF---E-ASGFL-DNVREISSKGGLVSLQRQLLSQLLK 78 (1074)
Q Consensus 4 ~~~~l~~lL~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F---~-~~~~~-~~~~~~s~~~~~~~l~~~ll~~l~~ 78 (1074)
-++.|...+..+ .-.+.+.++|+.|+||||+|+.+++.+...= + ..|-. .++++........ +..
T Consensus 25 ~v~~L~~~i~~~-~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d---------~~~ 94 (451)
T PRK06305 25 VVAVLKNALRFN-RAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD---------VLE 94 (451)
T ss_pred HHHHHHHHHHcC-CCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc---------eEE
Confidence 345666666533 1246788999999999999999998653210 0 00000 0011111000000 000
Q ss_pred ccCCccccccchHHHHHhh-----hCCCeEEEEEcCCCChH--HHHHHhcCCCCCCCCCEEEEEeCC-hhhhhh-cCCCc
Q 001458 79 LADNSIWNVFDGIDMLGSR-----LQRKKVLLVIDDVVDVK--QLQSLAGNREWFGSGSRIIITSRD-EHLLKT-HGVDE 149 (1074)
Q Consensus 79 ~~~~~~~~~~~~~~~i~~~-----L~~kr~LlVLDdv~~~~--~l~~l~~~~~~~~~gs~IiiTTR~-~~v~~~-~~~~~ 149 (1074)
.........++ +..+.+. ..+++-++|+|+++... ..+.|......-.+...+|++|.. +.+... .....
T Consensus 95 i~g~~~~gid~-ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il~t~~~~kl~~tI~sRc~ 173 (451)
T PRK06305 95 IDGASHRGIED-IRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTEIHKIPGTILSRCQ 173 (451)
T ss_pred eeccccCCHHH-HHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEEEeCChHhcchHHHHhce
Confidence 00000000001 1111111 12456688999997653 344444433333356667766643 333332 22345
Q ss_pred eecCCCCChHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCCc-hHHHHH
Q 001458 150 VYKPHGLNYDEALQLFNMKAFKTYQPLQECVQLSARIIRYAGGLP-LALEVL 200 (1074)
Q Consensus 150 ~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlP-Lal~~~ 200 (1074)
.++++.+++++..+.+.+.+-+.... -..+.+..++++++|.+ .|+..+
T Consensus 174 ~v~f~~l~~~el~~~L~~~~~~eg~~--i~~~al~~L~~~s~gdlr~a~~~L 223 (451)
T PRK06305 174 KMHLKRIPEETIIDKLALIAKQEGIE--TSREALLPIARAAQGSLRDAESLY 223 (451)
T ss_pred EEeCCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 78999999999988888765332211 12345778889999866 344443
No 157
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.19 E-value=0.00065 Score=66.90 Aligned_cols=81 Identities=21% Similarity=0.263 Sum_probs=44.5
Q ss_pred CCCCEEeccCCCCCccccccccCCCCCCEEEecCCCCCCccchhhcCCCCCCEEEcCCCcccccCc--chhccCCCCEee
Q 001458 567 SGLVLLNLKNCRSLEILPVTVSNLKCLRSLKLSGCSKLKKFPEIVRSMKDLSELFLDGTSIKEVPS--SIELLTKLELLN 644 (1074)
Q Consensus 567 ~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~Ls~~~~~~~~p~~~~~l~~L~~L~L~~~~l~~lp~--~~~~l~~L~~L~ 644 (1074)
.+...++|++|...... .|..++.|.+|.+++|.+...-|..-.-+++|+.|.+.+|+|.++.. .+..+|+|++|.
T Consensus 42 d~~d~iDLtdNdl~~l~--~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLD--NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred cccceecccccchhhcc--cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 34555555555433221 24456666666666666655555555555666666666666654432 234455566665
Q ss_pred cCCCC
Q 001458 645 LSDCK 649 (1074)
Q Consensus 645 L~~~~ 649 (1074)
+-+|+
T Consensus 120 ll~Np 124 (233)
T KOG1644|consen 120 LLGNP 124 (233)
T ss_pred ecCCc
Confidence 55554
No 158
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.18 E-value=0.00019 Score=87.22 Aligned_cols=19 Identities=37% Similarity=0.590 Sum_probs=9.4
Q ss_pred ccCCCCccEEEcCCCCCCC
Q 001458 682 LGQIESLEELDISGTAVPH 700 (1074)
Q Consensus 682 l~~l~~L~~L~L~~n~i~~ 700 (1074)
..++++|..||+++++++.
T Consensus 169 c~sFpNL~sLDIS~TnI~n 187 (699)
T KOG3665|consen 169 CASFPNLRSLDISGTNISN 187 (699)
T ss_pred hhccCccceeecCCCCccC
Confidence 3444555555555555443
No 159
>CHL00176 ftsH cell division protein; Validated
Probab=97.18 E-value=0.011 Score=71.48 Aligned_cols=149 Identities=17% Similarity=0.205 Sum_probs=81.7
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhcccccceEEEeechhhhccCChHHHHHHHHHHHhcccCCccccccchHHHHHhhh
Q 001458 19 VRMIGICGMGGLGKTTIARVVYDLISHEFEASGFLDNVREISSKGGLVSLQRQLLSQLLKLADNSIWNVFDGIDMLGSRL 98 (1074)
Q Consensus 19 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L 98 (1074)
.+-|.++|++|.|||++|++++......| +. ++. .++.... ... ........+....
T Consensus 216 p~gVLL~GPpGTGKT~LAralA~e~~~p~-----i~----is~----s~f~~~~----~g~------~~~~vr~lF~~A~ 272 (638)
T CHL00176 216 PKGVLLVGPPGTGKTLLAKAIAGEAEVPF-----FS----ISG----SEFVEMF----VGV------GAARVRDLFKKAK 272 (638)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCe-----ee----ccH----HHHHHHh----hhh------hHHHHHHHHHHHh
Confidence 45689999999999999999998653322 21 110 0010000 000 0001122233334
Q ss_pred CCCeEEEEEcCCCChH----------------HHHHHhcCCCCC--CCCCEEEEEeCChhhhhh-c----CCCceecCCC
Q 001458 99 QRKKVLLVIDDVVDVK----------------QLQSLAGNREWF--GSGSRIIITSRDEHLLKT-H----GVDEVYKPHG 155 (1074)
Q Consensus 99 ~~kr~LlVLDdv~~~~----------------~l~~l~~~~~~~--~~gs~IiiTTR~~~v~~~-~----~~~~~~~l~~ 155 (1074)
...+.+|++||+|... .+..+....+.+ ..+-.||.||...+.... . ..+..+.+..
T Consensus 273 ~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~l 352 (638)
T CHL00176 273 ENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDILDAALLRPGRFDRQITVSL 352 (638)
T ss_pred cCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhhhhhhhccccCceEEEECC
Confidence 5677899999997541 133343332222 245566767765433221 1 2346788888
Q ss_pred CChHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCC
Q 001458 156 LNYDEALQLFNMKAFKTYQPLQECVQLSARIIRYAGGL 193 (1074)
Q Consensus 156 L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~Gl 193 (1074)
.+.++..++++.++-..... .......+++.+.|.
T Consensus 353 Pd~~~R~~IL~~~l~~~~~~---~d~~l~~lA~~t~G~ 387 (638)
T CHL00176 353 PDREGRLDILKVHARNKKLS---PDVSLELIARRTPGF 387 (638)
T ss_pred CCHHHHHHHHHHHHhhcccc---hhHHHHHHHhcCCCC
Confidence 99999999998877432111 112344566666663
No 160
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.16 E-value=0.0003 Score=85.52 Aligned_cols=111 Identities=28% Similarity=0.334 Sum_probs=80.9
Q ss_pred CCCCCCEEEecCCCCC-CccchhhcCCCCCCEEEcCCCcccccCcchhccCCCCEeecCCCCCCc-cccchhcccCCCCE
Q 001458 589 NLKCLRSLKLSGCSKL-KKFPEIVRSMKDLSELFLDGTSIKEVPSSIELLTKLELLNLSDCKNLV-RLPSSIIALKSLKT 666 (1074)
Q Consensus 589 ~l~~L~~L~Ls~~~~~-~~~p~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~~l~-~~~~~~~~l~~L~~ 666 (1074)
.||+|+.|.+++-... ..+.....++++|..||+++++++.+ ..++.+++|+.|.+.+-.... ..-..+.++++|+.
T Consensus 146 ~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~v 224 (699)
T KOG3665|consen 146 MLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRV 224 (699)
T ss_pred hCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCe
Confidence 4788888888775442 33556677889999999999998888 778899999999888765443 22235668999999
Q ss_pred EEccCCcCCCcC--c----ccccCCCCccEEEcCCCCCCC
Q 001458 667 LNLSGCFKLENV--P----ETLGQIESLEELDISGTAVPH 700 (1074)
Q Consensus 667 L~L~~c~~l~~~--p----~~l~~l~~L~~L~L~~n~i~~ 700 (1074)
||+|.-...... . +.-..+|+|+.||.+|+.+..
T Consensus 225 LDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 225 LDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE 264 (699)
T ss_pred eeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence 999986554332 1 223458899999999887644
No 161
>PTZ00202 tuzin; Provisional
Probab=97.13 E-value=0.0027 Score=70.63 Aligned_cols=150 Identities=16% Similarity=0.176 Sum_probs=89.1
Q ss_pred hhHHHHHHHhhcCCC-CCeEEEEEEccCCCcHHHHHHHHHHHhcccccceEEEeechhhhccCChHHHHHHHHHHHhccc
Q 001458 2 DSRCEKLRFLMDSGS-SDVRMIGICGMGGLGKTTIARVVYDLISHEFEASGFLDNVREISSKGGLVSLQRQLLSQLLKLA 80 (1074)
Q Consensus 2 ~~~~~~l~~lL~~~~-~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~ll~~l~~~~ 80 (1074)
+.++.+|...|...+ ...+++.|.|++|+|||||++.+..... ...++.|.+ +..++++.++.++....
T Consensus 268 eaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~----~~qL~vNpr------g~eElLr~LL~ALGV~p 337 (550)
T PTZ00202 268 EAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG----MPAVFVDVR------GTEDTLRSVVKALGVPN 337 (550)
T ss_pred HHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC----ceEEEECCC------CHHHHHHHHHHHcCCCC
Confidence 456777888886433 3467999999999999999999997654 235554332 56888899998875422
Q ss_pred CCccccccchHHHHHhhh------CCCeEEEEEc--CCCChHH----HHHHhcCCCCCCCCCEEEEEeCChhhhhh---c
Q 001458 81 DNSIWNVFDGIDMLGSRL------QRKKVLLVID--DVVDVKQ----LQSLAGNREWFGSGSRIIITSRDEHLLKT---H 145 (1074)
Q Consensus 81 ~~~~~~~~~~~~~i~~~L------~~kr~LlVLD--dv~~~~~----l~~l~~~~~~~~~gs~IiiTTR~~~v~~~---~ 145 (1074)
. ....+....|.+.+ ++++.+||+- +-.+..- .-.|+.. ..-|.|++----+.+-.. .
T Consensus 338 ~---~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l~rvyne~v~la~d----rr~ch~v~evpleslt~~~~~l 410 (550)
T PTZ00202 338 V---EACGDLLDFISEACRRAKKMNGETPLLVLKLREGSSLQRVYNEVVALACD----RRLCHVVIEVPLESLTIANTLL 410 (550)
T ss_pred c---ccHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcHHHHHHHHHHHHcc----chhheeeeeehHhhcchhcccC
Confidence 1 11123334444333 2566666653 2222221 1122211 244566654433332111 1
Q ss_pred CCCceecCCCCChHHHHHHHHHh
Q 001458 146 GVDEVYKPHGLNYDEALQLFNMK 168 (1074)
Q Consensus 146 ~~~~~~~l~~L~~~ea~~Lf~~~ 168 (1074)
..-..|-++.++.++|.++-.+.
T Consensus 411 prldf~~vp~fsr~qaf~y~~h~ 433 (550)
T PTZ00202 411 PRLDFYLVPNFSRSQAFAYTQHA 433 (550)
T ss_pred ccceeEecCCCCHHHHHHHHhhc
Confidence 22457999999999998877654
No 162
>PRK12377 putative replication protein; Provisional
Probab=97.12 E-value=0.0018 Score=68.62 Aligned_cols=36 Identities=14% Similarity=0.122 Sum_probs=29.5
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhcccccceEEEe
Q 001458 19 VRMIGICGMGGLGKTTIARVVYDLISHEFEASGFLD 54 (1074)
Q Consensus 19 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 54 (1074)
...+.++|..|+|||+||.++++.+..+...+.|+.
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~ 136 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVT 136 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEE
Confidence 356899999999999999999998776655566654
No 163
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.12 E-value=0.011 Score=63.41 Aligned_cols=186 Identities=17% Similarity=0.101 Sum_probs=108.5
Q ss_pred HHHHHHHhhcCCC-CCeEEEEEEccCCCcHHHHHHHHHHHhcccccc------eEEEeechhhhccCChHHHHHHHHHHH
Q 001458 4 RCEKLRFLMDSGS-SDVRMIGICGMGGLGKTTIARVVYDLISHEFEA------SGFLDNVREISSKGGLVSLQRQLLSQL 76 (1074)
Q Consensus 4 ~~~~l~~lL~~~~-~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~------~~~~~~~~~~s~~~~~~~l~~~ll~~l 76 (1074)
-+++|+.++.... ...+-+.|+|.+|+|||++++++.......++. ++.+. ....++...+...|+.++
T Consensus 45 ~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq----~P~~p~~~~~Y~~IL~~l 120 (302)
T PF05621_consen 45 ALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQ----MPPEPDERRFYSAILEAL 120 (302)
T ss_pred HHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEe----cCCCCChHHHHHHHHHHh
Confidence 4677888887543 335668999999999999999999755443332 23333 556788899999999997
Q ss_pred hcccCCccccccchHHHHHhhhCC-CeEEEEEcCCCChH------H------HHHHhcCCCCCCCCCEEEEEeCChhhhh
Q 001458 77 LKLADNSIWNVFDGIDMLGSRLQR-KKVLLVIDDVVDVK------Q------LQSLAGNREWFGSGSRIIITSRDEHLLK 143 (1074)
Q Consensus 77 ~~~~~~~~~~~~~~~~~i~~~L~~-kr~LlVLDdv~~~~------~------l~~l~~~~~~~~~gs~IiiTTR~~~v~~ 143 (1074)
...... .....+....+...|+. +-=+||+|++.+.- | ++.|... -.=+-|.|-|++-.-+-
T Consensus 121 gaP~~~-~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~Ne----L~ipiV~vGt~~A~~al 195 (302)
T PF05621_consen 121 GAPYRP-RDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNE----LQIPIVGVGTREAYRAL 195 (302)
T ss_pred CcccCC-CCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhc----cCCCeEEeccHHHHHHh
Confidence 544322 23444444455555554 33478899997641 1 2222222 23455667676532111
Q ss_pred hc-----CCCceecCCCCChH-HHHHHHHHhh--hcCCC-CChhHHHHHHHHHHHhCCCchHHH
Q 001458 144 TH-----GVDEVYKPHGLNYD-EALQLFNMKA--FKTYQ-PLQECVQLSARIIRYAGGLPLALE 198 (1074)
Q Consensus 144 ~~-----~~~~~~~l~~L~~~-ea~~Lf~~~a--~~~~~-~~~~~~~~~~~i~~~~~GlPLal~ 198 (1074)
.. ....++.++....+ |...|+.... +.-.. ..-...+++..|...++|+.--+.
T Consensus 196 ~~D~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~ 259 (302)
T PF05621_consen 196 RTDPQLASRFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGELS 259 (302)
T ss_pred ccCHHHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHH
Confidence 11 11235566666654 4444443221 11111 112346789999999999874443
No 164
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=97.11 E-value=0.012 Score=64.45 Aligned_cols=31 Identities=26% Similarity=0.350 Sum_probs=26.9
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHHHHhcccc
Q 001458 17 SDVRMIGICGMGGLGKTTIARVVYDLISHEF 47 (1074)
Q Consensus 17 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F 47 (1074)
.-++.++|||++|.|||.+|+++++...-.|
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg~~~ 176 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMGIEP 176 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcCCCe
Confidence 4478999999999999999999999876553
No 165
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.10 E-value=0.022 Score=59.04 Aligned_cols=29 Identities=14% Similarity=0.299 Sum_probs=24.3
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhcccc
Q 001458 19 VRMIGICGMGGLGKTTIARVVYDLISHEF 47 (1074)
Q Consensus 19 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F 47 (1074)
..-|-+||..|.|||++++++.+.+..+-
T Consensus 52 annvLL~G~rGtGKSSlVkall~~y~~~G 80 (249)
T PF05673_consen 52 ANNVLLWGARGTGKSSLVKALLNEYADQG 80 (249)
T ss_pred CcceEEecCCCCCHHHHHHHHHHHHhhcC
Confidence 44567899999999999999999876553
No 166
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.09 E-value=0.00027 Score=72.26 Aligned_cols=190 Identities=21% Similarity=0.241 Sum_probs=98.8
Q ss_pred CCCceEEEcCcCCccc-----ccccccCCCCCcEEEccCCCCC-----------CCCCCCCCCCCCcEEEecCccccccc
Q 001458 408 MDKTIEIYMCYSRIGE-----LWKGIKHLDKLKVMILSHSENL-----------IRMPDFTGAPNLEKLILEGCTRLYEI 471 (1074)
Q Consensus 408 ~~~L~~L~L~~~~i~~-----l~~~~~~l~~L~~L~Ls~~~~~-----------~~~~~~~~l~~L~~L~L~~~~~l~~~ 471 (1074)
+..+++++|++|.|++ +.+.+.+-++|+..++++-..- ...+.+.++|+|+..+|+.|......
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 4556667777776653 3445666677777777654211 11233566777777777777665555
Q ss_pred Ccc----hhcCCCccEEeccCCCCCCcCCccccccccCceecCcCcccccCCCCCcEEeccCCCCCCcC----chhhhcC
Q 001458 472 HPS----LLLHNKLIILNMKDCTSLITLPGKILMKSLEKLNLKSLPTTISGLKCLSTLDVSGDLKFREF----PEIVEHM 543 (1074)
Q Consensus 472 ~~~----i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~l~~~l~~l~~L~~L~L~~~~~~~~~----~~~l~~l 543 (1074)
|+. +.+.+.|.+|.+++|. +..+.+.---+.|.+|.. ......-|.|++.....|...... ...+...
T Consensus 109 ~e~L~d~is~~t~l~HL~l~NnG-lGp~aG~rigkal~~la~---nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh 184 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNNG-LGPIAGGRIGKALFHLAY---NKKAADKPKLEVVICGRNRLENGSKELSAALLESH 184 (388)
T ss_pred chHHHHHHhcCCCceeEEeecCC-CCccchhHHHHHHHHHHH---HhhhccCCCceEEEeccchhccCcHHHHHHHHHhh
Confidence 533 4556777778777753 332222110111111110 112334455666666665443221 1234444
Q ss_pred CCccEEEccCcCCccC------chhhhcCCCCCEEeccCCCCCcc----ccccccCCCCCCEEEecCC
Q 001458 544 EHLSELHLEGTAIRGL------PLSIELLSGLVLLNLKNCRSLEI----LPVTVSNLKCLRSLKLSGC 601 (1074)
Q Consensus 544 ~~L~~L~L~~~~i~~l------p~~~~~l~~L~~L~L~~~~~~~~----l~~~l~~l~~L~~L~Ls~~ 601 (1074)
.+|+.+.+..|.|..- -..+..+.+|+.|+|++|..+.. +...+...+.|+.|.+..|
T Consensus 185 ~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDC 252 (388)
T COG5238 185 ENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDC 252 (388)
T ss_pred cCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccch
Confidence 6777888877777641 12345566777777776654432 1222333444555555554
No 167
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.09 E-value=0.023 Score=67.87 Aligned_cols=181 Identities=13% Similarity=0.101 Sum_probs=96.4
Q ss_pred HHHHHHhhcCCCCCeEEEEEEccCCCcHHHHHHHHHHHhccc-----ccceEEEeechhhhccC--ChHHHHHHHHHHHh
Q 001458 5 CEKLRFLMDSGSSDVRMIGICGMGGLGKTTIARVVYDLISHE-----FEASGFLDNVREISSKG--GLVSLQRQLLSQLL 77 (1074)
Q Consensus 5 ~~~l~~lL~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-----F~~~~~~~~~~~~s~~~--~~~~l~~~ll~~l~ 77 (1074)
++.|...+..+ .-.+.+.++|+.|+||||+|+.+++.+-.. +.+. ...+++.+.... ++..+ .
T Consensus 25 v~~L~~~i~~~-~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~-~C~~C~~i~~~~~~dv~~i--------d 94 (563)
T PRK06647 25 VETLKHSIESN-KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCG-ECSSCKSIDNDNSLDVIEI--------D 94 (563)
T ss_pred HHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCc-cchHHHHHHcCCCCCeEEe--------c
Confidence 45666766533 235678999999999999999999865321 1110 000111111100 00000 0
Q ss_pred cccCCccccccchHHHHHh-hhCCCeEEEEEcCCCChH--HHHHHhcCCCCCCCCCEEEEEeCC-hhhhhhc-CCCceec
Q 001458 78 KLADNSIWNVFDGIDMLGS-RLQRKKVLLVIDDVVDVK--QLQSLAGNREWFGSGSRIIITSRD-EHLLKTH-GVDEVYK 152 (1074)
Q Consensus 78 ~~~~~~~~~~~~~~~~i~~-~L~~kr~LlVLDdv~~~~--~l~~l~~~~~~~~~gs~IiiTTR~-~~v~~~~-~~~~~~~ 152 (1074)
........++.+..+.+.. -..+++-++|+|+++... +++.|...+..-.+...+|++|.+ ..+.... .....++
T Consensus 95 gas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~~tI~SRc~~~~ 174 (563)
T PRK06647 95 GASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPATIKSRCQHFN 174 (563)
T ss_pred CcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhHHHHHHhceEEE
Confidence 0000000011111111111 123466688999998764 466666555433456666666644 3443322 2244689
Q ss_pred CCCCChHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCCchHH
Q 001458 153 PHGLNYDEALQLFNMKAFKTYQPLQECVQLSARIIRYAGGLPLAL 197 (1074)
Q Consensus 153 l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal 197 (1074)
.+.++.++..+.+.+.+....... ..+.+..|++.++|.+-.+
T Consensus 175 f~~l~~~el~~~L~~i~~~egi~i--d~eAl~lLa~~s~GdlR~a 217 (563)
T PRK06647 175 FRLLSLEKIYNMLKKVCLEDQIKY--EDEALKWIAYKSTGSVRDA 217 (563)
T ss_pred ecCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHH
Confidence 999999999888887764433221 2355677888899977443
No 168
>PRK08181 transposase; Validated
Probab=97.08 E-value=0.0013 Score=70.49 Aligned_cols=35 Identities=17% Similarity=0.042 Sum_probs=27.9
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHhcccccceEEEe
Q 001458 20 RMIGICGMGGLGKTTIARVVYDLISHEFEASGFLD 54 (1074)
Q Consensus 20 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 54 (1074)
.-+.++|++|+|||.||.++.+....+...+.|+.
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~ 141 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTR 141 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeee
Confidence 34899999999999999999987665544556654
No 169
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.08 E-value=0.027 Score=68.15 Aligned_cols=166 Identities=19% Similarity=0.194 Sum_probs=92.6
Q ss_pred HHHHHHhhcCCCCCeEEEEEEccCCCcHHHHHHHHHHHhccc-----------------------ccceEEEeechhhhc
Q 001458 5 CEKLRFLMDSGSSDVRMIGICGMGGLGKTTIARVVYDLISHE-----------------------FEASGFLDNVREISS 61 (1074)
Q Consensus 5 ~~~l~~lL~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-----------------------F~~~~~~~~~~~~s~ 61 (1074)
++.|...+..+ .-.+.+.++|+.|+||||+|+.++..+... |+.. .+. ...
T Consensus 26 ~~~L~~~i~~~-~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~~-~ld----~~~ 99 (614)
T PRK14971 26 TTTLKNAIATN-KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNIH-ELD----AAS 99 (614)
T ss_pred HHHHHHHHHcC-CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCceE-Eec----ccc
Confidence 44555666532 225678999999999999999999865311 1111 010 000
Q ss_pred cCChHHHHHHHHHHHhcccCCccccccchHHHHHhhhCCCeEEEEEcCCCChH--HHHHHhcCCCCCCCCCEEEEEe-CC
Q 001458 62 KGGLVSLQRQLLSQLLKLADNSIWNVFDGIDMLGSRLQRKKVLLVIDDVVDVK--QLQSLAGNREWFGSGSRIIITS-RD 138 (1074)
Q Consensus 62 ~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~~kr~LlVLDdv~~~~--~l~~l~~~~~~~~~gs~IiiTT-R~ 138 (1074)
..++.++ ++++.++.. .-..+++=++|+|+++... ..+.|...+..-...+.+|++| +.
T Consensus 100 ~~~vd~I-r~li~~~~~-----------------~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~tt~~ 161 (614)
T PRK14971 100 NNSVDDI-RNLIEQVRI-----------------PPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEK 161 (614)
T ss_pred cCCHHHH-HHHHHHHhh-----------------CcccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEEeCCc
Confidence 1111111 111111100 0012345578999998764 3555554443334566666555 44
Q ss_pred hhhhhhc-CCCceecCCCCChHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCCchH
Q 001458 139 EHLLKTH-GVDEVYKPHGLNYDEALQLFNMKAFKTYQPLQECVQLSARIIRYAGGLPLA 196 (1074)
Q Consensus 139 ~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLa 196 (1074)
..+.... .....+++++++.++....+.+.+-...... ..+.+..|++.++|..--
T Consensus 162 ~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~i--~~~al~~La~~s~gdlr~ 218 (614)
T PRK14971 162 HKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGITA--EPEALNVIAQKADGGMRD 218 (614)
T ss_pred hhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHH
Confidence 4444332 3346799999999999988887664332211 124567888888886643
No 170
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.08 E-value=0.00095 Score=73.91 Aligned_cols=35 Identities=14% Similarity=0.141 Sum_probs=29.0
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHhcccccceEEEe
Q 001458 20 RMIGICGMGGLGKTTIARVVYDLISHEFEASGFLD 54 (1074)
Q Consensus 20 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 54 (1074)
.-+.++|..|+|||.||.++++.+..+-..++|+.
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t 218 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRT 218 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEE
Confidence 66999999999999999999997765545566665
No 171
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.07 E-value=0.0055 Score=76.99 Aligned_cols=141 Identities=13% Similarity=0.112 Sum_probs=75.9
Q ss_pred hHHHHHHHhhcCCCCCeEEEEEEccCCCcHHHHHHHHHHHhcccc------cceEEEeechhhhcc----CChHHHHHHH
Q 001458 3 SRCEKLRFLMDSGSSDVRMIGICGMGGLGKTTIARVVYDLISHEF------EASGFLDNVREISSK----GGLVSLQRQL 72 (1074)
Q Consensus 3 ~~~~~l~~lL~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F------~~~~~~~~~~~~s~~----~~~~~l~~~l 72 (1074)
.++.++...|.... ..-+.++|.+|+||||+|+.+++++.... ...+|..+....... ..+..-.+++
T Consensus 194 ~ei~~~i~~l~r~~--~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~ag~~~~ge~e~~lk~i 271 (852)
T TIGR03345 194 DEIRQMIDILLRRR--QNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQAGASVKGEFENRLKSV 271 (852)
T ss_pred HHHHHHHHHHhcCC--cCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhcccccchHHHHHHHHH
Confidence 44566666555332 22356999999999999999999875432 122332222211100 0111111112
Q ss_pred HHHHhcccCCccccccchHHHHHhhhCCCeEEEEEcCCCChH-------HHH---HHhcCCCCCCCC-CEEEEEeCChhh
Q 001458 73 LSQLLKLADNSIWNVFDGIDMLGSRLQRKKVLLVIDDVVDVK-------QLQ---SLAGNREWFGSG-SRIIITSRDEHL 141 (1074)
Q Consensus 73 l~~l~~~~~~~~~~~~~~~~~i~~~L~~kr~LlVLDdv~~~~-------~l~---~l~~~~~~~~~g-s~IiiTTR~~~v 141 (1074)
+.. +++ .+++++|++|+++... +.+ .+.+.+ ..| -++|-||...+.
T Consensus 272 i~e------------------~~~--~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l---~~G~l~~IgaTT~~e~ 328 (852)
T TIGR03345 272 IDE------------------VKA--SPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPAL---ARGELRTIAATTWAEY 328 (852)
T ss_pred HHH------------------HHh--cCCCeEEEEeChHHhccCCCccccccHHHHhhHHh---hCCCeEEEEecCHHHH
Confidence 211 111 2468999999986542 111 233332 234 456666654322
Q ss_pred hhh-------cCCCceecCCCCChHHHHHHHHHh
Q 001458 142 LKT-------HGVDEVYKPHGLNYDEALQLFNMK 168 (1074)
Q Consensus 142 ~~~-------~~~~~~~~l~~L~~~ea~~Lf~~~ 168 (1074)
... ......+.++.++.+++.+++...
T Consensus 329 ~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~ 362 (852)
T TIGR03345 329 KKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGL 362 (852)
T ss_pred hhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHH
Confidence 111 122358999999999999997543
No 172
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.04 E-value=0.0091 Score=60.02 Aligned_cols=79 Identities=16% Similarity=0.226 Sum_probs=46.6
Q ss_pred CCCeEEEEEEccCCCcHHHHHHHHHHHhcc-cccce-EEEeechhhhccCChHHHHHHHHHHHhcccCCccccccchHHH
Q 001458 16 SSDVRMIGICGMGGLGKTTIARVVYDLISH-EFEAS-GFLDNVREISSKGGLVSLQRQLLSQLLKLADNSIWNVFDGIDM 93 (1074)
Q Consensus 16 ~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~-~F~~~-~~~~~~~~~s~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~ 93 (1074)
+.+++-+.|.||+|+||||-+..+++..-+ .+... .=+. .|...++.-+..+|-.-...
T Consensus 45 ~gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELN----ASdeRGIDvVRn~IK~FAQ~--------------- 105 (333)
T KOG0991|consen 45 EGNMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELN----ASDERGIDVVRNKIKMFAQK--------------- 105 (333)
T ss_pred cCCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhcc----CccccccHHHHHHHHHHHHh---------------
Confidence 456777899999999999999999986532 33222 2122 33344444443333222100
Q ss_pred HHhhh-CCCeEEEEEcCCCChH
Q 001458 94 LGSRL-QRKKVLLVIDDVVDVK 114 (1074)
Q Consensus 94 i~~~L-~~kr~LlVLDdv~~~~ 114 (1074)
+-.| .++.-.+|||..|++.
T Consensus 106 -kv~lp~grhKIiILDEADSMT 126 (333)
T KOG0991|consen 106 -KVTLPPGRHKIIILDEADSMT 126 (333)
T ss_pred -hccCCCCceeEEEeeccchhh
Confidence 0011 2455689999999875
No 173
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.04 E-value=0.0014 Score=69.23 Aligned_cols=36 Identities=14% Similarity=0.178 Sum_probs=28.8
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhcccccceEEEe
Q 001458 19 VRMIGICGMGGLGKTTIARVVYDLISHEFEASGFLD 54 (1074)
Q Consensus 19 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 54 (1074)
...+.++|.+|+|||+||.++++.+..+-..++++.
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it 134 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIIT 134 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 457899999999999999999997765545555553
No 174
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.99 E-value=0.011 Score=66.43 Aligned_cols=132 Identities=16% Similarity=0.199 Sum_probs=79.0
Q ss_pred CCCCeEEEEEEccCCCcHHHHHHHHHHHhcccccceEEEeechhhhccCChHHHHHHHHHHHhcccCCccccccchHHHH
Q 001458 15 GSSDVRMIGICGMGGLGKTTIARVVYDLISHEFEASGFLDNVREISSKGGLVSLQRQLLSQLLKLADNSIWNVFDGIDML 94 (1074)
Q Consensus 15 ~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i 94 (1074)
+......|.+.|++|.|||+||.+++. ...|+.+-.+. ...--++.+-.+ ........
T Consensus 534 ~~s~lvSvLl~Gp~~sGKTaLAA~iA~--~S~FPFvKiiS----pe~miG~sEsaK----------------c~~i~k~F 591 (744)
T KOG0741|consen 534 ERSPLVSVLLEGPPGSGKTALAAKIAL--SSDFPFVKIIS----PEDMIGLSESAK----------------CAHIKKIF 591 (744)
T ss_pred ccCcceEEEEecCCCCChHHHHHHHHh--hcCCCeEEEeC----hHHccCccHHHH----------------HHHHHHHH
Confidence 344567789999999999999999986 56787655433 000111111110 00011222
Q ss_pred HhhhCCCeEEEEEcCCCChHHHHHHhcCC------------CCC-CCCCE--EEEEeCChhhhhhcCC----CceecCCC
Q 001458 95 GSRLQRKKVLLVIDDVVDVKQLQSLAGNR------------EWF-GSGSR--IIITSRDEHLLKTHGV----DEVYKPHG 155 (1074)
Q Consensus 95 ~~~L~~kr~LlVLDdv~~~~~l~~l~~~~------------~~~-~~gs~--IiiTTR~~~v~~~~~~----~~~~~l~~ 155 (1074)
.+.-+..=-.||+||++..-+|-.+.+.+ ... .+|-| |+-||..+.++..|+. ...|.|+.
T Consensus 592 ~DAYkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpn 671 (744)
T KOG0741|consen 592 EDAYKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPN 671 (744)
T ss_pred HHhhcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCc
Confidence 33345566789999998776554333221 111 23444 4456777888888865 35788998
Q ss_pred CCh-HHHHHHHHHh
Q 001458 156 LNY-DEALQLFNMK 168 (1074)
Q Consensus 156 L~~-~ea~~Lf~~~ 168 (1074)
+.. ++..+.++..
T Consensus 672 l~~~~~~~~vl~~~ 685 (744)
T KOG0741|consen 672 LTTGEQLLEVLEEL 685 (744)
T ss_pred cCchHHHHHHHHHc
Confidence 887 6777777654
No 175
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=96.97 E-value=0.015 Score=64.23 Aligned_cols=184 Identities=14% Similarity=0.084 Sum_probs=95.8
Q ss_pred HHHHHHhhcCCCCCeEEEEEEccCCCcHHHHHHHHHHHhcc---------------cccceEEEeechhhhccCChHHHH
Q 001458 5 CEKLRFLMDSGSSDVRMIGICGMGGLGKTTIARVVYDLISH---------------EFEASGFLDNVREISSKGGLVSLQ 69 (1074)
Q Consensus 5 ~~~l~~lL~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~---------------~F~~~~~~~~~~~~s~~~~~~~l~ 69 (1074)
.+.+...+..+ .-.+...++|+.|+||+++|.++++.+-. .++...|+...... .... +.
T Consensus 13 ~~~L~~~i~~~-rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~-~g~~---~~ 87 (314)
T PRK07399 13 IELLTAAIKQN-RIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQH-QGKL---IT 87 (314)
T ss_pred HHHHHHHHHhC-CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccc-cccc---cc
Confidence 34555555432 12478999999999999999999986522 12233343311000 0000 00
Q ss_pred HHHHHHHh-cccCCccccccchHHHHHhhh-----CCCeEEEEEcCCCChHH--HHHHhcCCCCCCCCCEEEEEe-CChh
Q 001458 70 RQLLSQLL-KLADNSIWNVFDGIDMLGSRL-----QRKKVLLVIDDVVDVKQ--LQSLAGNREWFGSGSRIIITS-RDEH 140 (1074)
Q Consensus 70 ~~ll~~l~-~~~~~~~~~~~~~~~~i~~~L-----~~kr~LlVLDdv~~~~~--l~~l~~~~~~~~~gs~IiiTT-R~~~ 140 (1074)
..-+.... .......-.+ +.++.+.+.+ .+++-++|+|+++.+.. ...|+..+.--+ .+.+|++| +...
T Consensus 88 ~~~~~~~~~~~~~~~~I~i-d~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~fILi~~~~~~ 165 (314)
T PRK07399 88 ASEAEEAGLKRKAPPQIRL-EQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGTLILIAPSPES 165 (314)
T ss_pred hhhhhhccccccccccCcH-HHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeEEEEECChHh
Confidence 00000100 0000000001 1122333333 24567888999987643 344443322112 34555555 4455
Q ss_pred hhhhc-CCCceecCCCCChHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCCchHHHHH
Q 001458 141 LLKTH-GVDEVYKPHGLNYDEALQLFNMKAFKTYQPLQECVQLSARIIRYAGGLPLALEVL 200 (1074)
Q Consensus 141 v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~ 200 (1074)
+.... .....+.+.++++++..+.+......... . .....++..++|.|..+..+
T Consensus 166 Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~~--~---~~~~~l~~~a~Gs~~~al~~ 221 (314)
T PRK07399 166 LLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEIL--N---INFPELLALAQGSPGAAIAN 221 (314)
T ss_pred CcHHHHhhceEEecCCCCHHHHHHHHHHhhccccc--h---hHHHHHHHHcCCCHHHHHHH
Confidence 55443 33568999999999999999876521111 1 11357899999999765443
No 176
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.96 E-value=0.0098 Score=64.36 Aligned_cols=39 Identities=26% Similarity=0.253 Sum_probs=27.1
Q ss_pred HHHHHHhhcCCCCCeEEEEEEccCCCcHHHHHHHHHHHhcccc
Q 001458 5 CEKLRFLMDSGSSDVRMIGICGMGGLGKTTIARVVYDLISHEF 47 (1074)
Q Consensus 5 ~~~l~~lL~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F 47 (1074)
++++...+..+ +-|.++|++|+|||++|+++++.....|
T Consensus 11 ~~~~l~~l~~g----~~vLL~G~~GtGKT~lA~~la~~lg~~~ 49 (262)
T TIGR02640 11 TSRALRYLKSG----YPVHLRGPAGTGKTTLAMHVARKRDRPV 49 (262)
T ss_pred HHHHHHHHhcC----CeEEEEcCCCCCHHHHHHHHHHHhCCCE
Confidence 34444444432 3467899999999999999998664433
No 177
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=96.96 E-value=0.021 Score=63.00 Aligned_cols=182 Identities=15% Similarity=0.093 Sum_probs=94.1
Q ss_pred HHHHHHhhcCCCCCeEEEEEEccCCCcHHHHHHHHHHHhcccccceEEEeec-hhh--hccCChHHHHHHHHHHHhcccC
Q 001458 5 CEKLRFLMDSGSSDVRMIGICGMGGLGKTTIARVVYDLISHEFEASGFLDNV-REI--SSKGGLVSLQRQLLSQLLKLAD 81 (1074)
Q Consensus 5 ~~~l~~lL~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~-~~~--s~~~~~~~l~~~ll~~l~~~~~ 81 (1074)
.+++...+..+ .-.+.+.++|+.|+||+|+|..+++.+-..-...+--+.+ +-+ ...+++..+. . ..+..
T Consensus 13 ~~~l~~~~~~~-rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~-----~-~p~~~ 85 (319)
T PRK08769 13 YDQTVAALDAG-RLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVS-----F-IPNRT 85 (319)
T ss_pred HHHHHHHHHcC-CcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEe-----c-CCCcc
Confidence 45555555422 2356789999999999999999998553211000000000 000 0000100000 0 00000
Q ss_pred CccccccchHHHHH---hhh-----CCCeEEEEEcCCCChHH--HHHHhcCCCCCCCCCEEEEEeCC-hhhhhhc-CCCc
Q 001458 82 NSIWNVFDGIDMLG---SRL-----QRKKVLLVIDDVVDVKQ--LQSLAGNREWFGSGSRIIITSRD-EHLLKTH-GVDE 149 (1074)
Q Consensus 82 ~~~~~~~~~~~~i~---~~L-----~~kr~LlVLDdv~~~~~--l~~l~~~~~~~~~gs~IiiTTR~-~~v~~~~-~~~~ 149 (1074)
.......-.++.|+ +.+ .+++-++|+|+++.+.. -..|+..+.--.+++.+|++|.. ..++... ....
T Consensus 86 ~~k~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq 165 (319)
T PRK08769 86 GDKLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQ 165 (319)
T ss_pred cccccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhhe
Confidence 00000011123332 222 24566889999987642 33333322222467777777765 4455443 3346
Q ss_pred eecCCCCChHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCCchHHHHHH
Q 001458 150 VYKPHGLNYDEALQLFNMKAFKTYQPLQECVQLSARIIRYAGGLPLALEVLG 201 (1074)
Q Consensus 150 ~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~g 201 (1074)
.+.+..++.+++.+.+.... .+ ...+..++..++|.|+....+.
T Consensus 166 ~i~~~~~~~~~~~~~L~~~~----~~----~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 166 RLEFKLPPAHEALAWLLAQG----VS----ERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred EeeCCCcCHHHHHHHHHHcC----CC----hHHHHHHHHHcCCCHHHHHHHh
Confidence 78999999999998886531 11 1225678999999998765543
No 178
>PRK09183 transposase/IS protein; Provisional
Probab=96.96 E-value=0.0021 Score=69.11 Aligned_cols=34 Identities=24% Similarity=0.144 Sum_probs=25.3
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHhcccccceEEE
Q 001458 20 RMIGICGMGGLGKTTIARVVYDLISHEFEASGFL 53 (1074)
Q Consensus 20 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 53 (1074)
..|.|+|+.|+|||+||.++.+....+-..+.|+
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~ 136 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFT 136 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 4688999999999999999987644333334444
No 179
>PRK06526 transposase; Provisional
Probab=96.94 E-value=0.0012 Score=70.51 Aligned_cols=28 Identities=21% Similarity=0.091 Sum_probs=23.3
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhccc
Q 001458 19 VRMIGICGMGGLGKTTIARVVYDLISHE 46 (1074)
Q Consensus 19 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 46 (1074)
.+-|.|+|++|+|||+||.++.+....+
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~ 125 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQA 125 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHC
Confidence 3458999999999999999998865443
No 180
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=96.93 E-value=0.014 Score=69.48 Aligned_cols=150 Identities=16% Similarity=0.191 Sum_probs=78.5
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhcccccceEEEeechhhhccCChHHHHHHHHHHHhcccCCccccccchHHHHHhhh
Q 001458 19 VRMIGICGMGGLGKTTIARVVYDLISHEFEASGFLDNVREISSKGGLVSLQRQLLSQLLKLADNSIWNVFDGIDMLGSRL 98 (1074)
Q Consensus 19 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L 98 (1074)
.+-+.++|++|.|||++|+++++...-.| +. ++ ..++. ...... ........+....
T Consensus 88 ~~giLL~GppGtGKT~la~alA~~~~~~~-----~~----i~----~~~~~----~~~~g~------~~~~l~~~f~~a~ 144 (495)
T TIGR01241 88 PKGVLLVGPPGTGKTLLAKAVAGEAGVPF-----FS----IS----GSDFV----EMFVGV------GASRVRDLFEQAK 144 (495)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHcCCCe-----ee----cc----HHHHH----HHHhcc------cHHHHHHHHHHHH
Confidence 44588999999999999999998653332 11 11 00111 110000 0001112222223
Q ss_pred CCCeEEEEEcCCCChH----------------HHHHHhcCCCCC--CCCCEEEEEeCChhh-----hhhcCCCceecCCC
Q 001458 99 QRKKVLLVIDDVVDVK----------------QLQSLAGNREWF--GSGSRIIITSRDEHL-----LKTHGVDEVYKPHG 155 (1074)
Q Consensus 99 ~~kr~LlVLDdv~~~~----------------~l~~l~~~~~~~--~~gs~IiiTTR~~~v-----~~~~~~~~~~~l~~ 155 (1074)
...+.+|++|+++... .+..+....+.+ ..+-.||.||..... ......+..+.++.
T Consensus 145 ~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~ 224 (495)
T TIGR01241 145 KNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDL 224 (495)
T ss_pred hcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCChhhcCHHHhcCCcceEEEEcCC
Confidence 3466899999996531 122232222211 234455666655332 11112456789999
Q ss_pred CChHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCCc
Q 001458 156 LNYDEALQLFNMKAFKTYQPLQECVQLSARIIRYAGGLP 194 (1074)
Q Consensus 156 L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlP 194 (1074)
.+.++..++|..+.-...... + .....+++.+.|.-
T Consensus 225 Pd~~~R~~il~~~l~~~~~~~-~--~~l~~la~~t~G~s 260 (495)
T TIGR01241 225 PDIKGREEILKVHAKNKKLAP-D--VDLKAVARRTPGFS 260 (495)
T ss_pred CCHHHHHHHHHHHHhcCCCCc-c--hhHHHHHHhCCCCC
Confidence 999999999987764322211 1 11336777777744
No 181
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.93 E-value=0.014 Score=70.30 Aligned_cols=174 Identities=17% Similarity=0.178 Sum_probs=91.8
Q ss_pred HHHHHHhhcCCCCCeEEEEEEccCCCcHHHHHHHHHHHhccc-c-c-ceEEEe-echhhhc-------------cCChHH
Q 001458 5 CEKLRFLMDSGSSDVRMIGICGMGGLGKTTIARVVYDLISHE-F-E-ASGFLD-NVREISS-------------KGGLVS 67 (1074)
Q Consensus 5 ~~~l~~lL~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-F-~-~~~~~~-~~~~~s~-------------~~~~~~ 67 (1074)
++.|...+..+ .-.+.+.++|+.|+||||+|+.+++.+... . . ..|-.+ .++++.. ..++.+
T Consensus 25 ~~~L~~~i~~~-~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g~~~d~~eid~~s~~~v~~ 103 (576)
T PRK14965 25 SRTLQNAIDTG-RVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEGRSVDVFEIDGASNTGVDD 103 (576)
T ss_pred HHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcCCCCCeeeeeccCccCHHH
Confidence 35556666532 224677899999999999999999865321 0 0 000000 0011100 011111
Q ss_pred HHHHHHHHHhcccCCccccccchHHHHHh-hhCCCeEEEEEcCCCChH--HHHHHhcCCCCCCCCCEEEEEeCC-hhhhh
Q 001458 68 LQRQLLSQLLKLADNSIWNVFDGIDMLGS-RLQRKKVLLVIDDVVDVK--QLQSLAGNREWFGSGSRIIITSRD-EHLLK 143 (1074)
Q Consensus 68 l~~~ll~~l~~~~~~~~~~~~~~~~~i~~-~L~~kr~LlVLDdv~~~~--~l~~l~~~~~~~~~gs~IiiTTR~-~~v~~ 143 (1074)
+ +++... +.. -..+++-++|+|+++... ..+.|...+..-.+...+|++|.+ ..+..
T Consensus 104 i-r~l~~~------------------~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~~ 164 (576)
T PRK14965 104 I-RELREN------------------VKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPI 164 (576)
T ss_pred H-HHHHHH------------------HHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhhH
Confidence 1 111111 110 012345578899998764 345555433333456666655544 44443
Q ss_pred hc-CCCceecCCCCChHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCCc-hHHHHH
Q 001458 144 TH-GVDEVYKPHGLNYDEALQLFNMKAFKTYQPLQECVQLSARIIRYAGGLP-LALEVL 200 (1074)
Q Consensus 144 ~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlP-Lal~~~ 200 (1074)
.. .....++++.++.++....+...+-...... ..+....+++.++|.. .|+..+
T Consensus 165 tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~i--~~~al~~la~~a~G~lr~al~~L 221 (576)
T PRK14965 165 TILSRCQRFDFRRIPLQKIVDRLRYIADQEGISI--SDAALALVARKGDGSMRDSLSTL 221 (576)
T ss_pred HHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCCC--CHHHHHHHHHHcCCCHHHHHHHH
Confidence 32 2345788999999998888876553322111 1245667888888865 444444
No 182
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.89 E-value=0.0031 Score=66.77 Aligned_cols=50 Identities=24% Similarity=0.282 Sum_probs=39.5
Q ss_pred HHHHHHhhcCCCCCeEEEEEEccCCCcHHHHHHHHHHHhcccccceEEEe
Q 001458 5 CEKLRFLMDSGSSDVRMIGICGMGGLGKTTIARVVYDLISHEFEASGFLD 54 (1074)
Q Consensus 5 ~~~l~~lL~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 54 (1074)
+..|..+|..+-..-.++.|+|.+|+||||+|.+++......-..++|++
T Consensus 9 i~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~ 58 (225)
T PRK09361 9 CKMLDELLGGGFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYID 58 (225)
T ss_pred cHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 45677777655455679999999999999999999986655566778876
No 183
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.89 E-value=0.0069 Score=75.57 Aligned_cols=145 Identities=14% Similarity=0.121 Sum_probs=77.3
Q ss_pred hhHHHHHHHhhcCCCCCeEEEEEEccCCCcHHHHHHHHHHHhccc-----c-cceEEEeechhhhccCChHHHHHHHHHH
Q 001458 2 DSRCEKLRFLMDSGSSDVRMIGICGMGGLGKTTIARVVYDLISHE-----F-EASGFLDNVREISSKGGLVSLQRQLLSQ 75 (1074)
Q Consensus 2 ~~~~~~l~~lL~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-----F-~~~~~~~~~~~~s~~~~~~~l~~~ll~~ 75 (1074)
+.+++++...|.... ..=+.++|++|+|||++|+.+++++... + ...+|..+........
T Consensus 188 ~~ei~~~~~~L~~~~--~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l~a~~------------ 253 (731)
T TIGR02639 188 EDELERTIQVLCRRK--KNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGSLLAGT------------ 253 (731)
T ss_pred HHHHHHHHHHHhcCC--CCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHHHhhhc------------
Confidence 345666666665432 2235799999999999999999977432 1 2334433221111000
Q ss_pred HhcccCCccccccchHHHHHhhh-CCCeEEEEEcCCCChH-----------HHHHHhcCCCCCCCCC-EEEEEeCChhhh
Q 001458 76 LLKLADNSIWNVFDGIDMLGSRL-QRKKVLLVIDDVVDVK-----------QLQSLAGNREWFGSGS-RIIITSRDEHLL 142 (1074)
Q Consensus 76 l~~~~~~~~~~~~~~~~~i~~~L-~~kr~LlVLDdv~~~~-----------~l~~l~~~~~~~~~gs-~IiiTTR~~~v~ 142 (1074)
....+.++.+..+.+.+ +.++.+|++|+++..- .-+.+.+.+ ..|- ++|-+|..++..
T Consensus 254 ------~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l---~~g~i~~IgaTt~~e~~ 324 (731)
T TIGR02639 254 ------KYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPAL---SSGKLRCIGSTTYEEYK 324 (731)
T ss_pred ------cccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHH---hCCCeEEEEecCHHHHH
Confidence 00011222223333333 2357899999987431 122233332 2343 455444432211
Q ss_pred hh-------cCCCceecCCCCChHHHHHHHHHhh
Q 001458 143 KT-------HGVDEVYKPHGLNYDEALQLFNMKA 169 (1074)
Q Consensus 143 ~~-------~~~~~~~~l~~L~~~ea~~Lf~~~a 169 (1074)
.. ...-..++++.++.++..+++....
T Consensus 325 ~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 325 NHFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred HHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 11 1123478999999999999998654
No 184
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.89 E-value=0.0018 Score=63.86 Aligned_cols=105 Identities=17% Similarity=0.189 Sum_probs=64.2
Q ss_pred ccCcCceEEEecCCCCCCCCCCCCCCCceEEEcCcCCcccccccccC-CCCCcEEEccCCCCC--CCCCCCCCCCCCcEE
Q 001458 384 YLSNRLRLLGWRGYPLKFLPSNLQMDKTIEIYMCYSRIGELWKGIKH-LDKLKVMILSHSENL--IRMPDFTGAPNLEKL 460 (1074)
Q Consensus 384 ~l~~~L~~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~l~~~~~~-l~~L~~L~Ls~~~~~--~~~~~~~~l~~L~~L 460 (1074)
........+++++|.+..++..-.+..|..|.+.+|+|+.+-..+.. +++|+.|.|.+|.+. ..+..+..+|.|++|
T Consensus 39 ~~~d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 39 ATLDQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYL 118 (233)
T ss_pred ccccccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCcccee
Confidence 33345666777777777776655777777777777777777554443 456777777776533 223336667777777
Q ss_pred EecCcccccccC---cchhcCCCccEEeccC
Q 001458 461 ILEGCTRLYEIH---PSLLLHNKLIILNMKD 488 (1074)
Q Consensus 461 ~L~~~~~l~~~~---~~i~~l~~L~~L~L~~ 488 (1074)
.+-+|.....-. -.+..+++|+.|++.+
T Consensus 119 tll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 119 TLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred eecCCchhcccCceeEEEEecCcceEeehhh
Confidence 777765433221 2344556666666554
No 185
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.88 E-value=0.0014 Score=68.41 Aligned_cols=34 Identities=26% Similarity=0.437 Sum_probs=29.5
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhcccccceEEEe
Q 001458 21 MIGICGMGGLGKTTIARVVYDLISHEFEASGFLD 54 (1074)
Q Consensus 21 vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 54 (1074)
-++|+|..|.||||+++.+.....+.|..++.+.
T Consensus 15 r~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t 48 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLIT 48 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEe
Confidence 4689999999999999999999999997666554
No 186
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.87 E-value=0.0055 Score=73.44 Aligned_cols=42 Identities=19% Similarity=0.371 Sum_probs=32.6
Q ss_pred hHHHHHHHhhcCC---CCCeEEEEEEccCCCcHHHHHHHHHHHhc
Q 001458 3 SRCEKLRFLMDSG---SSDVRMIGICGMGGLGKTTIARVVYDLIS 44 (1074)
Q Consensus 3 ~~~~~l~~lL~~~---~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 44 (1074)
..++++..++... ....++++|+|++|.||||+|+.++..+.
T Consensus 91 ~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~ 135 (637)
T TIGR00602 91 KKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELG 135 (637)
T ss_pred HHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4567778777643 23357899999999999999999998654
No 187
>PRK08118 topology modulation protein; Reviewed
Probab=96.85 E-value=0.00081 Score=67.16 Aligned_cols=32 Identities=34% Similarity=0.524 Sum_probs=25.7
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhc---ccccceEE
Q 001458 21 MIGICGMGGLGKTTIARVVYDLIS---HEFEASGF 52 (1074)
Q Consensus 21 vv~I~G~gGiGKTtLA~~v~~~~~---~~F~~~~~ 52 (1074)
-|.|+|++|.||||||+++++... -+|+..+|
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 489999999999999999998764 33555554
No 188
>PRK06921 hypothetical protein; Provisional
Probab=96.84 E-value=0.0019 Score=69.73 Aligned_cols=36 Identities=17% Similarity=0.184 Sum_probs=29.3
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhccc-ccceEEEe
Q 001458 19 VRMIGICGMGGLGKTTIARVVYDLISHE-FEASGFLD 54 (1074)
Q Consensus 19 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~-F~~~~~~~ 54 (1074)
..-+.++|..|+|||.||.++++.+..+ -..++|+.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~ 153 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFP 153 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEE
Confidence 4568999999999999999999987665 44556665
No 189
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=96.84 E-value=0.048 Score=56.38 Aligned_cols=177 Identities=18% Similarity=0.195 Sum_probs=101.6
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHHHhcccccceEEEeechhhhccCChHHHHHHHHHHHhcccCCccccccchHHHHHhh
Q 001458 18 DVRMIGICGMGGLGKTTIARVVYDLISHEFEASGFLDNVREISSKGGLVSLQRQLLSQLLKLADNSIWNVFDGIDMLGSR 97 (1074)
Q Consensus 18 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~ 97 (1074)
+-+++.++|.-|.|||+++|++.......=-..+.+. ........+...++.++.. .+.+......+.+.+.
T Consensus 50 ~qg~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~-----~~~~s~~~~~~ai~~~l~~---~p~~~~~~~~e~~~~~ 121 (269)
T COG3267 50 GQGILAVTGEVGSGKTVLRRALLASLNEDQVAVVVID-----KPTLSDATLLEAIVADLES---QPKVNVNAVLEQIDRE 121 (269)
T ss_pred CCceEEEEecCCCchhHHHHHHHHhcCCCceEEEEec-----CcchhHHHHHHHHHHHhcc---CccchhHHHHHHHHHH
Confidence 3468999999999999999966654332211222222 2234556777777777644 2223333333333333
Q ss_pred h-----CCCe-EEEEEcCCCCh--HHHHHHh---cCCCCCCCCCEEEEEeCCh-------hhhhhc--CCCceecCCCCC
Q 001458 98 L-----QRKK-VLLVIDDVVDV--KQLQSLA---GNREWFGSGSRIIITSRDE-------HLLKTH--GVDEVYKPHGLN 157 (1074)
Q Consensus 98 L-----~~kr-~LlVLDdv~~~--~~l~~l~---~~~~~~~~gs~IiiTTR~~-------~v~~~~--~~~~~~~l~~L~ 157 (1074)
| +++| +.+++|+.... ++++.+. ..-..+..--+|+..-..+ .+.... .+.-.|++.+++
T Consensus 122 L~al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~ 201 (269)
T COG3267 122 LAALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLT 201 (269)
T ss_pred HHHHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcC
Confidence 3 4677 99999998654 2344332 2211111112344433221 111111 112239999999
Q ss_pred hHHHHHHHHHhhhcCCCCChh-HHHHHHHHHHHhCCCchHHHHHHh
Q 001458 158 YDEALQLFNMKAFKTYQPLQE-CVQLSARIIRYAGGLPLALEVLGS 202 (1074)
Q Consensus 158 ~~ea~~Lf~~~a~~~~~~~~~-~~~~~~~i~~~~~GlPLal~~~g~ 202 (1074)
.++...++.++.-+...+.+- ..+....|.....|.|.+|-.++.
T Consensus 202 ~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~ 247 (269)
T COG3267 202 EAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLAT 247 (269)
T ss_pred hHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHH
Confidence 999999998876544333222 234566788899999999887764
No 190
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=96.82 E-value=0.049 Score=65.37 Aligned_cols=180 Identities=15% Similarity=0.099 Sum_probs=91.5
Q ss_pred HHHHHHhhcCCCCCeEEEEEEccCCCcHHHHHHHHHHHhcccccceEEEeechhhhccCChHHHHHHHHHHHhc---ccC
Q 001458 5 CEKLRFLMDSGSSDVRMIGICGMGGLGKTTIARVVYDLISHEFEASGFLDNVREISSKGGLVSLQRQLLSQLLK---LAD 81 (1074)
Q Consensus 5 ~~~l~~lL~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~ll~~l~~---~~~ 81 (1074)
++.|...+..+ .-.+.+.++|+.|+||||+|+.+++.+-..-.... ...+.-...+.+...... .-+
T Consensus 25 ~~~L~~~i~~~-~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~---------~pC~~C~~C~~i~~g~~~dv~eid 94 (559)
T PRK05563 25 TKTLKNAIKQG-KISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDG---------EPCNECEICKAITNGSLMDVIEID 94 (559)
T ss_pred HHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC---------CCCCccHHHHHHhcCCCCCeEEee
Confidence 45566666543 23567788999999999999999986532100000 000000011111100000 000
Q ss_pred CccccccchHHHHHhh-----hCCCeEEEEEcCCCChH--HHHHHhcCCCCCCCCCEEEEEe-CChhhhhhc-CCCceec
Q 001458 82 NSIWNVFDGIDMLGSR-----LQRKKVLLVIDDVVDVK--QLQSLAGNREWFGSGSRIIITS-RDEHLLKTH-GVDEVYK 152 (1074)
Q Consensus 82 ~~~~~~~~~~~~i~~~-----L~~kr~LlVLDdv~~~~--~l~~l~~~~~~~~~gs~IiiTT-R~~~v~~~~-~~~~~~~ 152 (1074)
.......+.+..+.+. ..+++-++|+|+++... .+..|...+..-.+...+|++| ....+.... .....++
T Consensus 95 aas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~~tI~SRc~~~~ 174 (559)
T PRK05563 95 AASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPATILSRCQRFD 174 (559)
T ss_pred ccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCcHHHHhHheEEe
Confidence 0000000111222222 23456688999998663 4555654433223445555555 433333322 2245688
Q ss_pred CCCCChHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCCchH
Q 001458 153 PHGLNYDEALQLFNMKAFKTYQPLQECVQLSARIIRYAGGLPLA 196 (1074)
Q Consensus 153 l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLa 196 (1074)
...++.++..+.+.+.+-+..... ..+.+..|++.++|.+..
T Consensus 175 f~~~~~~ei~~~L~~i~~~egi~i--~~~al~~ia~~s~G~~R~ 216 (559)
T PRK05563 175 FKRISVEDIVERLKYILDKEGIEY--EDEALRLIARAAEGGMRD 216 (559)
T ss_pred cCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHH
Confidence 999999998888887664332211 124566788888887653
No 191
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.81 E-value=0.008 Score=63.48 Aligned_cols=80 Identities=20% Similarity=0.370 Sum_probs=48.9
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHh----cccccceEEEeechhhhccCChHHHHHHHHHHHhcccCCccccccchHHHH
Q 001458 19 VRMIGICGMGGLGKTTIARVVYDLI----SHEFEASGFLDNVREISSKGGLVSLQRQLLSQLLKLADNSIWNVFDGIDML 94 (1074)
Q Consensus 19 ~~vv~I~G~gGiGKTtLA~~v~~~~----~~~F~~~~~~~~~~~~s~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i 94 (1074)
-|+|.++|++|.|||+|.++++++. .++|.....+. ++. ..++++.+.+... .+....+.|
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liE----ins--------hsLFSKWFsESgK---lV~kmF~kI 241 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIE----INS--------HSLFSKWFSESGK---LVAKMFQKI 241 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEE----Eeh--------hHHHHHHHhhhhh---HHHHHHHHH
Confidence 5889999999999999999999854 45666665554 111 1233333322221 222334455
Q ss_pred HhhhCCCe--EEEEEcCCCCh
Q 001458 95 GSRLQRKK--VLLVIDDVVDV 113 (1074)
Q Consensus 95 ~~~L~~kr--~LlVLDdv~~~ 113 (1074)
.+.+..+. +.+.+|.|+..
T Consensus 242 ~ELv~d~~~lVfvLIDEVESL 262 (423)
T KOG0744|consen 242 QELVEDRGNLVFVLIDEVESL 262 (423)
T ss_pred HHHHhCCCcEEEEEeHHHHHH
Confidence 55555544 66778998654
No 192
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=96.77 E-value=0.1 Score=57.56 Aligned_cols=176 Identities=13% Similarity=0.094 Sum_probs=92.9
Q ss_pred HHHHHHhhcCCCCCeEEEEEEccCCCcHHHHHHHHHHHhcccc--cceEEE-eechhhh--ccCChHHHHHHHHHHHhcc
Q 001458 5 CEKLRFLMDSGSSDVRMIGICGMGGLGKTTIARVVYDLISHEF--EASGFL-DNVREIS--SKGGLVSLQRQLLSQLLKL 79 (1074)
Q Consensus 5 ~~~l~~lL~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F--~~~~~~-~~~~~~s--~~~~~~~l~~~ll~~l~~~ 79 (1074)
-+++...+..+ .-.+.+-+.|+.|+||+++|+.++..+-..= ...|=. ..++.+. ..+++..+ ...
T Consensus 12 ~~~l~~~~~~~-rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i--------~p~ 82 (319)
T PRK06090 12 WQNWKAGLDAG-RIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVI--------KPE 82 (319)
T ss_pred HHHHHHHHHcC-CcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEE--------ecC
Confidence 34555555432 2357889999999999999999998542110 000000 0000000 00111000 000
Q ss_pred cCCccccccchHHHHHhhh-----CCCeEEEEEcCCCChH--HHHHHhcCCCCCCCCCEEEEEeCC-hhhhhhc-CCCce
Q 001458 80 ADNSIWNVFDGIDMLGSRL-----QRKKVLLVIDDVVDVK--QLQSLAGNREWFGSGSRIIITSRD-EHLLKTH-GVDEV 150 (1074)
Q Consensus 80 ~~~~~~~~~~~~~~i~~~L-----~~kr~LlVLDdv~~~~--~l~~l~~~~~~~~~gs~IiiTTR~-~~v~~~~-~~~~~ 150 (1074)
.....-.+++ ++.+.+.+ .+++=++|+|+++.+. ....+...+.--.+++.+|++|.+ ..++.+. .....
T Consensus 83 ~~~~~I~vdq-iR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq~ 161 (319)
T PRK06090 83 KEGKSITVEQ-IRQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQ 161 (319)
T ss_pred cCCCcCCHHH-HHHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhccee
Confidence 0000001111 11222222 2344578889998764 344444333322466777766655 4555543 33568
Q ss_pred ecCCCCChHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCCchHHHHH
Q 001458 151 YKPHGLNYDEALQLFNMKAFKTYQPLQECVQLSARIIRYAGGLPLALEVL 200 (1074)
Q Consensus 151 ~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~ 200 (1074)
+.+.+++.+++.+.+.... .. ....+++.++|.|+....+
T Consensus 162 ~~~~~~~~~~~~~~L~~~~-----~~-----~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 162 WVVTPPSTAQAMQWLKGQG-----IT-----VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred EeCCCCCHHHHHHHHHHcC-----Cc-----hHHHHHHHcCCCHHHHHHH
Confidence 8999999999999886542 11 1346789999999876555
No 193
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.73 E-value=0.011 Score=74.58 Aligned_cols=145 Identities=11% Similarity=0.059 Sum_probs=75.3
Q ss_pred hhHHHHHHHhhcCCCCCeEEEEEEccCCCcHHHHHHHHHHHhcccc------cceEEEeechhhhccCChHHHHHHHHHH
Q 001458 2 DSRCEKLRFLMDSGSSDVRMIGICGMGGLGKTTIARVVYDLISHEF------EASGFLDNVREISSKGGLVSLQRQLLSQ 75 (1074)
Q Consensus 2 ~~~~~~l~~lL~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F------~~~~~~~~~~~~s~~~~~~~l~~~ll~~ 75 (1074)
+.++.++...|.... ..-+.++|.+|+||||+|+.++.++.... ...+|..+.........
T Consensus 184 ~~ei~~~i~iL~r~~--~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l~ag~~----------- 250 (857)
T PRK10865 184 DEEIRRTIQVLQRRT--KNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAK----------- 250 (857)
T ss_pred HHHHHHHHHHHhcCC--cCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhhhhccc-----------
Confidence 345666777665432 23456999999999999999999875421 22333332221110000
Q ss_pred HhcccCCccccccchHHHHHhhh--CCCeEEEEEcCCCChH---------HHHH-HhcCCCCCCCC-CEEEEEeCChhhh
Q 001458 76 LLKLADNSIWNVFDGIDMLGSRL--QRKKVLLVIDDVVDVK---------QLQS-LAGNREWFGSG-SRIIITSRDEHLL 142 (1074)
Q Consensus 76 l~~~~~~~~~~~~~~~~~i~~~L--~~kr~LlVLDdv~~~~---------~l~~-l~~~~~~~~~g-s~IiiTTR~~~v~ 142 (1074)
.....++....+-+.+ .+++++|++|+++... +... +.+.+ ..| -++|-||......
T Consensus 251 -------~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l---~~g~l~~IgaTt~~e~r 320 (857)
T PRK10865 251 -------YRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPAL---ARGELHCVGATTLDEYR 320 (857)
T ss_pred -------hhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchh---hcCCCeEEEcCCCHHHH
Confidence 0011111112221111 2468999999987653 1222 22222 233 3555555443321
Q ss_pred hh-------cCCCceecCCCCChHHHHHHHHHhh
Q 001458 143 KT-------HGVDEVYKPHGLNYDEALQLFNMKA 169 (1074)
Q Consensus 143 ~~-------~~~~~~~~l~~L~~~ea~~Lf~~~a 169 (1074)
.. ......+.+...+.++..+++....
T Consensus 321 ~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~ 354 (857)
T PRK10865 321 QYIEKDAALERRFQKVFVAEPSVEDTIAILRGLK 354 (857)
T ss_pred HHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHh
Confidence 11 1122356677778999999886543
No 194
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=96.72 E-value=0.0043 Score=70.35 Aligned_cols=48 Identities=21% Similarity=0.233 Sum_probs=33.9
Q ss_pred hHHHHHHHhhcCCCCCeEEEEEEccCCCcHHHHHHHHHHHhcc--cccceEEEe
Q 001458 3 SRCEKLRFLMDSGSSDVRMIGICGMGGLGKTTIARVVYDLISH--EFEASGFLD 54 (1074)
Q Consensus 3 ~~~~~l~~lL~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~--~F~~~~~~~ 54 (1074)
..++.+...|..+ +.|.++|++|+|||++|+++++.+.. .|..+.|+.
T Consensus 182 ~~le~l~~~L~~~----~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~Vt 231 (459)
T PRK11331 182 TTIETILKRLTIK----KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQ 231 (459)
T ss_pred HHHHHHHHHHhcC----CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEe
Confidence 3455555555532 45788999999999999999987643 455555555
No 195
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.71 E-value=0.04 Score=62.04 Aligned_cols=42 Identities=19% Similarity=0.369 Sum_probs=34.3
Q ss_pred HHHHHHhhcCCC-CCeEEEEEEccCCCcHHHHHHHHHHHhccc
Q 001458 5 CEKLRFLMDSGS-SDVRMIGICGMGGLGKTTIARVVYDLISHE 46 (1074)
Q Consensus 5 ~~~l~~lL~~~~-~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 46 (1074)
.+.|.+.+...+ ++..+|||.|.-|.||||+.+.+.+.+...
T Consensus 5 a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~ 47 (325)
T PF07693_consen 5 AKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEELKED 47 (325)
T ss_pred HHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 456667776543 668899999999999999999999887766
No 196
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.68 E-value=0.0094 Score=75.32 Aligned_cols=144 Identities=13% Similarity=0.121 Sum_probs=76.5
Q ss_pred hhHHHHHHHhhcCCCCCeEEEEEEccCCCcHHHHHHHHHHHhccc-----c-cceEEEeechhhhccCChHHHHHHHHHH
Q 001458 2 DSRCEKLRFLMDSGSSDVRMIGICGMGGLGKTTIARVVYDLISHE-----F-EASGFLDNVREISSKGGLVSLQRQLLSQ 75 (1074)
Q Consensus 2 ~~~~~~l~~lL~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-----F-~~~~~~~~~~~~s~~~~~~~l~~~ll~~ 75 (1074)
+.+++++...|.... ..-+.++|++|+|||++|+.++.++... . ...+|..+.......
T Consensus 185 ~~ei~~~~~~L~r~~--~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~l~ag------------- 249 (821)
T CHL00095 185 EKEIERVIQILGRRT--KNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGLLLAG------------- 249 (821)
T ss_pred HHHHHHHHHHHcccc--cCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHHHhcc-------------
Confidence 467777888776432 2234699999999999999999876421 1 133443322111100
Q ss_pred HhcccCCccccccchHHHHHhhh-CCCeEEEEEcCCCChH---------HHHHHhcCCCCCCCC-CEEEEEeCChhhhhh
Q 001458 76 LLKLADNSIWNVFDGIDMLGSRL-QRKKVLLVIDDVVDVK---------QLQSLAGNREWFGSG-SRIIITSRDEHLLKT 144 (1074)
Q Consensus 76 l~~~~~~~~~~~~~~~~~i~~~L-~~kr~LlVLDdv~~~~---------~l~~l~~~~~~~~~g-s~IiiTTR~~~v~~~ 144 (1074)
. ....+.++.+..+-+.+ ..++++|++|+++... +...+..+ ....| -++|-+|........
T Consensus 250 ----~-~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp--~l~rg~l~~IgaTt~~ey~~~ 322 (821)
T CHL00095 250 ----T-KYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKP--ALARGELQCIGATTLDEYRKH 322 (821)
T ss_pred ----C-CCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHH--HHhCCCcEEEEeCCHHHHHHH
Confidence 0 00111222222222222 2467999999986432 11222211 11233 455655555433211
Q ss_pred -------cCCCceecCCCCChHHHHHHHHH
Q 001458 145 -------HGVDEVYKPHGLNYDEALQLFNM 167 (1074)
Q Consensus 145 -------~~~~~~~~l~~L~~~ea~~Lf~~ 167 (1074)
.....++.++..+.++...++..
T Consensus 323 ie~D~aL~rRf~~I~v~ep~~~e~~aILr~ 352 (821)
T CHL00095 323 IEKDPALERRFQPVYVGEPSVEETIEILFG 352 (821)
T ss_pred HhcCHHHHhcceEEecCCCCHHHHHHHHHH
Confidence 12234678888999998888864
No 197
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.68 E-value=0.0028 Score=67.55 Aligned_cols=52 Identities=21% Similarity=0.269 Sum_probs=38.8
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHhcccccceEEEeechhhhccCChHHHHHHHH
Q 001458 20 RMIGICGMGGLGKTTIARVVYDLISHEFEASGFLDNVREISSKGGLVSLQRQLL 73 (1074)
Q Consensus 20 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~ll 73 (1074)
+-++|.|..|+||||||+.+++.++.+|+..+++.-+.+-. ..+.++.+++.
T Consensus 70 Qr~~If~~~G~GKTtLa~~i~~~i~~~~~~~~V~~~iGer~--~Ev~e~~~~~~ 121 (274)
T cd01133 70 GKIGLFGGAGVGKTVLIMELINNIAKAHGGYSVFAGVGERT--REGNDLYHEMK 121 (274)
T ss_pred CEEEEecCCCCChhHHHHHHHHHHHhcCCCEEEEEEeccCc--HHHHHHHHHHH
Confidence 35799999999999999999999988888888877554432 23444444444
No 198
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.68 E-value=0.0021 Score=64.82 Aligned_cols=36 Identities=19% Similarity=0.148 Sum_probs=26.3
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhcccccceEEEe
Q 001458 19 VRMIGICGMGGLGKTTIARVVYDLISHEFEASGFLD 54 (1074)
Q Consensus 19 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 54 (1074)
.+-+.++|..|+|||.||.++.+....+=..+.|+.
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~ 82 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFIT 82 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEE
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEee
Confidence 356999999999999999999986654444456664
No 199
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.66 E-value=0.012 Score=74.65 Aligned_cols=145 Identities=11% Similarity=0.074 Sum_probs=76.7
Q ss_pred hhHHHHHHHhhcCCCCCeEEEEEEccCCCcHHHHHHHHHHHhcccc------cceEEEeechhhhccCChHHHHHHHHHH
Q 001458 2 DSRCEKLRFLMDSGSSDVRMIGICGMGGLGKTTIARVVYDLISHEF------EASGFLDNVREISSKGGLVSLQRQLLSQ 75 (1074)
Q Consensus 2 ~~~~~~l~~lL~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F------~~~~~~~~~~~~s~~~~~~~l~~~ll~~ 75 (1074)
+.++.++...|.... -.-+.++|.+|+|||++|+.++.++...+ ...+|..++... +..
T Consensus 179 ~~ei~~~~~~l~r~~--~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~l-------------~a~ 243 (852)
T TIGR03346 179 DEEIRRTIQVLSRRT--KNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGAL-------------IAG 243 (852)
T ss_pred HHHHHHHHHHHhcCC--CCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHHH-------------hhc
Confidence 345667777665432 23346899999999999999999875432 223333222111 000
Q ss_pred HhcccCCccccccchHHHHHhhh--CCCeEEEEEcCCCChH----------HHHHHhcCCCCCCCC-CEEEEEeCChhhh
Q 001458 76 LLKLADNSIWNVFDGIDMLGSRL--QRKKVLLVIDDVVDVK----------QLQSLAGNREWFGSG-SRIIITSRDEHLL 142 (1074)
Q Consensus 76 l~~~~~~~~~~~~~~~~~i~~~L--~~kr~LlVLDdv~~~~----------~l~~l~~~~~~~~~g-s~IiiTTR~~~v~ 142 (1074)
. ....+.+.....+.+.+ .+++.+|++|+++... ..+.+.+.. ..| -++|-+|......
T Consensus 244 ----~-~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l---~~g~i~~IgaTt~~e~r 315 (852)
T TIGR03346 244 ----A-KYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPAL---ARGELHCIGATTLDEYR 315 (852)
T ss_pred ----c-hhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhh---hcCceEEEEeCcHHHHH
Confidence 0 00011111222222222 2468999999997542 122222222 233 3455455443321
Q ss_pred hh-------cCCCceecCCCCChHHHHHHHHHhh
Q 001458 143 KT-------HGVDEVYKPHGLNYDEALQLFNMKA 169 (1074)
Q Consensus 143 ~~-------~~~~~~~~l~~L~~~ea~~Lf~~~a 169 (1074)
.. ......+.++..+.++..+++....
T Consensus 316 ~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 316 KYIEKDAALERRFQPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred HHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHH
Confidence 11 1123467899999999999887653
No 200
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=96.64 E-value=0.085 Score=58.30 Aligned_cols=175 Identities=13% Similarity=0.096 Sum_probs=93.1
Q ss_pred HHHHHHhhcCCCCCeEEEEEEccCCCcHHHHHHHHHHHhccc--cc-ceEEEe-echhhh--ccCChHHHHHHHHHHHhc
Q 001458 5 CEKLRFLMDSGSSDVRMIGICGMGGLGKTTIARVVYDLISHE--FE-ASGFLD-NVREIS--SKGGLVSLQRQLLSQLLK 78 (1074)
Q Consensus 5 ~~~l~~lL~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~--F~-~~~~~~-~~~~~s--~~~~~~~l~~~ll~~l~~ 78 (1074)
-+++...+..+ .-.+...+.|+.|+||+|+|++++..+-.. .. ..|=.+ .++.+. ..+++..+ .
T Consensus 11 ~~~l~~~~~~~-rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i---------~ 80 (325)
T PRK06871 11 YQQITQAFQQG-LGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHIL---------E 80 (325)
T ss_pred HHHHHHHHHcC-CcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEE---------c
Confidence 34555555532 225778899999999999999999855221 10 001000 000000 00111000 0
Q ss_pred ccCCccccccchHHHHHhhh-----CCCeEEEEEcCCCChHH--HHHHhcCCCCCCCCCEEEEEeCC-hhhhhhc-CCCc
Q 001458 79 LADNSIWNVFDGIDMLGSRL-----QRKKVLLVIDDVVDVKQ--LQSLAGNREWFGSGSRIIITSRD-EHLLKTH-GVDE 149 (1074)
Q Consensus 79 ~~~~~~~~~~~~~~~i~~~L-----~~kr~LlVLDdv~~~~~--l~~l~~~~~~~~~gs~IiiTTR~-~~v~~~~-~~~~ 149 (1074)
..+...-.++ .++.+.+.+ .+++=++|+|+++.+.. ...|+..+.--.+++.+|++|.+ ..++... ....
T Consensus 81 p~~~~~I~id-~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~ 159 (325)
T PRK06871 81 PIDNKDIGVD-QVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQ 159 (325)
T ss_pred cccCCCCCHH-HHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhce
Confidence 0000000111 112222222 24556788999987653 34444333222466777777765 4555443 3356
Q ss_pred eecCCCCChHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCCchHH
Q 001458 150 VYKPHGLNYDEALQLFNMKAFKTYQPLQECVQLSARIIRYAGGLPLAL 197 (1074)
Q Consensus 150 ~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal 197 (1074)
.+.+.+++.+++.+.+...+. ... ..+..+++.++|.|+..
T Consensus 160 ~~~~~~~~~~~~~~~L~~~~~----~~~---~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 160 TWLIHPPEEQQALDWLQAQSS----AEI---SEILTALRINYGRPLLA 200 (325)
T ss_pred EEeCCCCCHHHHHHHHHHHhc----cCh---HHHHHHHHHcCCCHHHH
Confidence 899999999999998887641 111 12556788999999643
No 201
>PRK10536 hypothetical protein; Provisional
Probab=96.63 E-value=0.0059 Score=64.06 Aligned_cols=117 Identities=13% Similarity=0.172 Sum_probs=61.0
Q ss_pred EEEEEEccCCCcHHHHHHHHHHH-h-cccccceEEEeechhhhc-----cCChHHHHHHHHHHHhcccCCccccccchHH
Q 001458 20 RMIGICGMGGLGKTTIARVVYDL-I-SHEFEASGFLDNVREISS-----KGGLVSLQRQLLSQLLKLADNSIWNVFDGID 92 (1074)
Q Consensus 20 ~vv~I~G~gGiGKTtLA~~v~~~-~-~~~F~~~~~~~~~~~~s~-----~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~ 92 (1074)
.+|.+.|.+|.|||+||.+++.. + .+.|+..+.....-+... ..++.+-..-.+..+...-..-. .......
T Consensus 75 ~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ge~LGfLPG~~~eK~~p~~~pi~D~L~~~~-~~~~~~~ 153 (262)
T PRK10536 75 QLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFLPGDIAEKFAPYFRPVYDVLVRRL-GASFMQY 153 (262)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCchhhhCcCCCCHHHHHHHHHHHHHHHHHHHh-ChHHHHH
Confidence 48999999999999999999873 3 455555444322111111 11222222222222111000000 0000000
Q ss_pred HH-----------HhhhCCCe---EEEEEcCCCCh--HHHHHHhcCCCCCCCCCEEEEEeCChh
Q 001458 93 ML-----------GSRLQRKK---VLLVIDDVVDV--KQLQSLAGNREWFGSGSRIIITSRDEH 140 (1074)
Q Consensus 93 ~i-----------~~~L~~kr---~LlVLDdv~~~--~~l~~l~~~~~~~~~gs~IiiTTR~~~ 140 (1074)
.+ -..++++. -+||+|++.+. .+...+... .+.+|+||+|--..+
T Consensus 154 ~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~~~~k~~ltR---~g~~sk~v~~GD~~Q 214 (262)
T PRK10536 154 CLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTAAQMKMFLTR---LGENVTVIVNGDITQ 214 (262)
T ss_pred HHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCHHHHHHHHhh---cCCCCEEEEeCChhh
Confidence 11 13455655 49999999765 455555543 479999999865543
No 202
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.61 E-value=0.00041 Score=82.99 Aligned_cols=35 Identities=29% Similarity=0.397 Sum_probs=20.9
Q ss_pred CCCCcEEeccCCCCCCc--CchhhhcCCCccEEEccC
Q 001458 519 LKCLSTLDVSGDLKFRE--FPEIVEHMEHLSELHLEG 553 (1074)
Q Consensus 519 l~~L~~L~L~~~~~~~~--~~~~l~~l~~L~~L~L~~ 553 (1074)
++.|+.|.+.++..... +-.....+++|+.|++++
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 223 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSG 223 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccC
Confidence 45666666666655444 334556666777777665
No 203
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.61 E-value=0.0042 Score=65.42 Aligned_cols=51 Identities=24% Similarity=0.315 Sum_probs=40.0
Q ss_pred HHHHHHHhhcCCCCCeEEEEEEccCCCcHHHHHHHHHHHhcccccceEEEe
Q 001458 4 RCEKLRFLMDSGSSDVRMIGICGMGGLGKTTIARVVYDLISHEFEASGFLD 54 (1074)
Q Consensus 4 ~~~~l~~lL~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 54 (1074)
-+..|..+|..+-..-+++.|.|.+|+||||+|.+++.....+-..++|++
T Consensus 4 Gi~~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~ 54 (218)
T cd01394 4 GCKGLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYID 54 (218)
T ss_pred chhHHHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 456788888755455689999999999999999999987655545667775
No 204
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.61 E-value=0.0043 Score=61.75 Aligned_cols=34 Identities=29% Similarity=0.277 Sum_probs=27.1
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhcccccceEEEe
Q 001458 21 MIGICGMGGLGKTTIARVVYDLISHEFEASGFLD 54 (1074)
Q Consensus 21 vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 54 (1074)
++.|+|.+|.||||+|+.++.....+-..++|+.
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~ 34 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVD 34 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEE
Confidence 4789999999999999999987665445556654
No 205
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=96.60 E-value=0.19 Score=56.51 Aligned_cols=105 Identities=15% Similarity=0.081 Sum_probs=67.1
Q ss_pred CeEEEEEcCCCCh-----------HHHHHHhcCCCCCCCCCEEEEEeCChhh----hhhc--CCCceecCCCCChHHHHH
Q 001458 101 KKVLLVIDDVVDV-----------KQLQSLAGNREWFGSGSRIIITSRDEHL----LKTH--GVDEVYKPHGLNYDEALQ 163 (1074)
Q Consensus 101 kr~LlVLDdv~~~-----------~~l~~l~~~~~~~~~gs~IiiTTR~~~v----~~~~--~~~~~~~l~~L~~~ea~~ 163 (1074)
+|=+||+|++... .+|...+.. .+=..||++|-|... ...+ .+.+.+.+...+.+.|.+
T Consensus 148 ~~PVVVIdnF~~k~~~~~~iy~~laeWAa~Lv~----~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~ 223 (431)
T PF10443_consen 148 RRPVVVIDNFLHKAEENDFIYDKLAEWAASLVQ----NNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQ 223 (431)
T ss_pred cCCEEEEcchhccCcccchHHHHHHHHHHHHHh----cCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHH
Confidence 3678999998542 234433322 356789999988543 3333 345678999999999999
Q ss_pred HHHHhhhcCCCC-------------C-----hhHHHHHHHHHHHhCCCchHHHHHHhhcCC-CCH
Q 001458 164 LFNMKAFKTYQP-------------L-----QECVQLSARIIRYAGGLPLALEVLGSFLSG-RSV 209 (1074)
Q Consensus 164 Lf~~~a~~~~~~-------------~-----~~~~~~~~~i~~~~~GlPLal~~~g~~L~~-~~~ 209 (1074)
+...+.-..... . .....-....++..||=-.=+..+++.++. .++
T Consensus 224 yV~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p 288 (431)
T PF10443_consen 224 YVLSQLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESP 288 (431)
T ss_pred HHHHHhcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCH
Confidence 998876432110 0 123344556777788877778888777764 443
No 206
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=96.59 E-value=0.051 Score=60.71 Aligned_cols=162 Identities=16% Similarity=0.204 Sum_probs=95.1
Q ss_pred hHHHHHHHhhcC--CCCCeEEEEEEccCCCcHHHHHHHHHHHhcccccc--eEEEeechhhhccCChHHHHHHHHHHHhc
Q 001458 3 SRCEKLRFLMDS--GSSDVRMIGICGMGGLGKTTIARVVYDLISHEFEA--SGFLDNVREISSKGGLVSLQRQLLSQLLK 78 (1074)
Q Consensus 3 ~~~~~l~~lL~~--~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~--~~~~~~~~~~s~~~~~~~l~~~ll~~l~~ 78 (1074)
.++..+.+++.. +.+...-+-|.|-+|.|||.+...++.+....... ++++. + .+ -.....+...|...+..
T Consensus 157 ~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~in-c--~s-l~~~~aiF~kI~~~~~q 232 (529)
T KOG2227|consen 157 LEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYIN-C--TS-LTEASAIFKKIFSSLLQ 232 (529)
T ss_pred HHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEe-e--cc-ccchHHHHHHHHHHHHH
Confidence 455556666542 34456778999999999999999999876554433 34443 1 11 13445677777777644
Q ss_pred ccCCccccccchHHHHHhhhCCC--eEEEEEcCCCChHH--HHHHhcCCCCC-CCCCEEEEEeCC------hhhhhhc--
Q 001458 79 LADNSIWNVFDGIDMLGSRLQRK--KVLLVIDDVVDVKQ--LQSLAGNREWF-GSGSRIIITSRD------EHLLKTH-- 145 (1074)
Q Consensus 79 ~~~~~~~~~~~~~~~i~~~L~~k--r~LlVLDdv~~~~~--l~~l~~~~~~~-~~gs~IiiTTR~------~~v~~~~-- 145 (1074)
........ .+....+.....+. -+|+|||.+|.... -..+...+.|- -+++|+|+.--- ...+...
T Consensus 233 ~~~s~~~~-~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR~LprL~~ 311 (529)
T KOG2227|consen 233 DLVSPGTG-MQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDRFLPRLNL 311 (529)
T ss_pred HhcCCchh-HHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHHHhhhhhh
Confidence 43333322 33345555555553 48999999987642 11222222222 267776654321 1111111
Q ss_pred ---CCCceecCCCCChHHHHHHHHHhh
Q 001458 146 ---GVDEVYKPHGLNYDEALQLFNMKA 169 (1074)
Q Consensus 146 ---~~~~~~~l~~L~~~ea~~Lf~~~a 169 (1074)
-....+..++-+.++-.++|..+.
T Consensus 312 ~~~~~P~~l~F~PYTk~qI~~Il~~rl 338 (529)
T KOG2227|consen 312 DLTIKPKLLVFPPYTKDQIVEILQQRL 338 (529)
T ss_pred ccCCCCceeeecCCCHHHHHHHHHHHH
Confidence 123467778889999999998876
No 207
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.57 E-value=0.0018 Score=60.88 Aligned_cols=23 Identities=35% Similarity=0.508 Sum_probs=21.6
Q ss_pred EEEEEccCCCcHHHHHHHHHHHh
Q 001458 21 MIGICGMGGLGKTTIARVVYDLI 43 (1074)
Q Consensus 21 vv~I~G~gGiGKTtLA~~v~~~~ 43 (1074)
+|+|.|++|+||||+|+++++++
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999876
No 208
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=96.56 E-value=0.065 Score=60.04 Aligned_cols=152 Identities=16% Similarity=0.100 Sum_probs=78.1
Q ss_pred HHHHHHhhcCCCCCeEEEEEEccCCCcHHHHHHHHHHHhccc--ccce-EEE-eechhhhc--cCChHHHHHHHHHHHhc
Q 001458 5 CEKLRFLMDSGSSDVRMIGICGMGGLGKTTIARVVYDLISHE--FEAS-GFL-DNVREISS--KGGLVSLQRQLLSQLLK 78 (1074)
Q Consensus 5 ~~~l~~lL~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~--F~~~-~~~-~~~~~~s~--~~~~~~l~~~ll~~l~~ 78 (1074)
++.+...+..+ .-.+...++|+.|+||||+|+.+++.+-.. .... |=. ..++.+.. .+++..+
T Consensus 15 ~~~L~~~~~~~-~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~i---------- 83 (329)
T PRK08058 15 VKMLQNSIAKN-RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLV---------- 83 (329)
T ss_pred HHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEe----------
Confidence 44555655422 225778999999999999999998865321 1000 000 00000000 0000000
Q ss_pred ccCCccccccchHHHHHhh-----hCCCeEEEEEcCCCChHH--HHHHhcCCCCCCCCCEEEEEeCCh-hhhhhc-CCCc
Q 001458 79 LADNSIWNVFDGIDMLGSR-----LQRKKVLLVIDDVVDVKQ--LQSLAGNREWFGSGSRIIITSRDE-HLLKTH-GVDE 149 (1074)
Q Consensus 79 ~~~~~~~~~~~~~~~i~~~-----L~~kr~LlVLDdv~~~~~--l~~l~~~~~~~~~gs~IiiTTR~~-~v~~~~-~~~~ 149 (1074)
..+.....+++ +..+.+. ..+++=++|+|+++.... .+.|...+..-.+++.+|++|.+. .+.... ....
T Consensus 84 ~~~~~~i~id~-ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll~TIrSRc~ 162 (329)
T PRK08058 84 APDGQSIKKDQ-IRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQILPTILSRCQ 162 (329)
T ss_pred ccccccCCHHH-HHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCcHHHHhhce
Confidence 00000000111 1111111 224455688999976643 444544443334677778777663 344332 3356
Q ss_pred eecCCCCChHHHHHHHHHh
Q 001458 150 VYKPHGLNYDEALQLFNMK 168 (1074)
Q Consensus 150 ~~~l~~L~~~ea~~Lf~~~ 168 (1074)
.+++++++.++..+.+...
T Consensus 163 ~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 163 VVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred eeeCCCCCHHHHHHHHHHc
Confidence 8999999999998888653
No 209
>PHA00729 NTP-binding motif containing protein
Probab=96.56 E-value=0.0096 Score=61.46 Aligned_cols=27 Identities=33% Similarity=0.180 Sum_probs=23.4
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHHHhc
Q 001458 18 DVRMIGICGMGGLGKTTIARVVYDLIS 44 (1074)
Q Consensus 18 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 44 (1074)
+...|.|.|.+|+||||||.++++++.
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 445789999999999999999998753
No 210
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=96.55 E-value=0.047 Score=60.96 Aligned_cols=178 Identities=13% Similarity=0.065 Sum_probs=93.4
Q ss_pred HHHHHHHhhcCCCCCeEEEEEEccCCCcHHHHHHHHHHHhccc--cc-ceEEEe-echhhh--ccCChHHHHHHHHHHHh
Q 001458 4 RCEKLRFLMDSGSSDVRMIGICGMGGLGKTTIARVVYDLISHE--FE-ASGFLD-NVREIS--SKGGLVSLQRQLLSQLL 77 (1074)
Q Consensus 4 ~~~~l~~lL~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~--F~-~~~~~~-~~~~~s--~~~~~~~l~~~ll~~l~ 77 (1074)
.-+++...+..+ .-.+...+.|+.|+||+|+|.+++..+-.. -. ..|=.+ .++.+. ..+++..+ .
T Consensus 10 ~~~~l~~~~~~~-rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i--------~ 80 (334)
T PRK07993 10 DYEQLVGSYQAG-RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTL--------T 80 (334)
T ss_pred HHHHHHHHHHcC-CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEE--------e
Confidence 345566666532 236788999999999999999999855211 00 000000 000000 00111000 0
Q ss_pred cccCCccccccchHHHHHhhh-----CCCeEEEEEcCCCChHH--HHHHhcCCCCCCCCCEEEEEeCC-hhhhhhc-CCC
Q 001458 78 KLADNSIWNVFDGIDMLGSRL-----QRKKVLLVIDDVVDVKQ--LQSLAGNREWFGSGSRIIITSRD-EHLLKTH-GVD 148 (1074)
Q Consensus 78 ~~~~~~~~~~~~~~~~i~~~L-----~~kr~LlVLDdv~~~~~--l~~l~~~~~~~~~gs~IiiTTR~-~~v~~~~-~~~ 148 (1074)
.+.....-.++ .++.+.+.+ .+++=++|+|+++.+.. -..|+..+.--.+++.+|++|.+ ..++.+. ...
T Consensus 81 p~~~~~~I~id-qiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRC 159 (334)
T PRK07993 81 PEKGKSSLGVD-AVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRC 159 (334)
T ss_pred cccccccCCHH-HHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcc
Confidence 00000000111 112222222 24666888999987643 33443332222466777766665 4555443 334
Q ss_pred ceecCCCCChHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCCchHHH
Q 001458 149 EVYKPHGLNYDEALQLFNMKAFKTYQPLQECVQLSARIIRYAGGLPLALE 198 (1074)
Q Consensus 149 ~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~ 198 (1074)
..+.+.+++.+++.+.+.... ... .+.+..+++.++|.|....
T Consensus 160 q~~~~~~~~~~~~~~~L~~~~----~~~---~~~a~~~~~la~G~~~~Al 202 (334)
T PRK07993 160 RLHYLAPPPEQYALTWLSREV----TMS---QDALLAALRLSAGAPGAAL 202 (334)
T ss_pred ccccCCCCCHHHHHHHHHHcc----CCC---HHHHHHHHHHcCCCHHHHH
Confidence 578999999999998886542 111 1236678999999996443
No 211
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.52 E-value=0.0067 Score=64.73 Aligned_cols=50 Identities=20% Similarity=0.228 Sum_probs=36.4
Q ss_pred HHHHHHhhcCCCCCeEEEEEEccCCCcHHHHHHHHHHHhccc------ccceEEEe
Q 001458 5 CEKLRFLMDSGSSDVRMIGICGMGGLGKTTIARVVYDLISHE------FEASGFLD 54 (1074)
Q Consensus 5 ~~~l~~lL~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~------F~~~~~~~ 54 (1074)
+..|..+|..+-..-.++.|+|.+|.||||+|.+++...... -..++|++
T Consensus 5 ~~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~ 60 (235)
T cd01123 5 SKALDELLGGGIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYID 60 (235)
T ss_pred chhhHhhccCCCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEe
Confidence 345667776544456899999999999999999997543221 35778876
No 212
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.52 E-value=0.0003 Score=64.65 Aligned_cols=81 Identities=26% Similarity=0.254 Sum_probs=39.0
Q ss_pred CCCCCEEEecCCCCCCccchhh-cCCCCCCEEEcCCCcccccCcchhccCCCCEeecCCCCCCccccchhcccCCCCEEE
Q 001458 590 LKCLRSLKLSGCSKLKKFPEIV-RSMKDLSELFLDGTSIKEVPSSIELLTKLELLNLSDCKNLVRLPSSIIALKSLKTLN 668 (1074)
Q Consensus 590 l~~L~~L~Ls~~~~~~~~p~~~-~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~ 668 (1074)
...|+..+|++|.. +.+|..| ..++.++.|++++|.|.++|..+..++.|+.|+++.|+.. ..|..+..+.+|-.|+
T Consensus 52 ~~el~~i~ls~N~f-k~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Ld 129 (177)
T KOG4579|consen 52 GYELTKISLSDNGF-KKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLD 129 (177)
T ss_pred CceEEEEecccchh-hhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhc
Confidence 33444444444432 2333322 2344566666666666666666666666666666665532 2233333344444444
Q ss_pred ccCC
Q 001458 669 LSGC 672 (1074)
Q Consensus 669 L~~c 672 (1074)
..+|
T Consensus 130 s~~n 133 (177)
T KOG4579|consen 130 SPEN 133 (177)
T ss_pred CCCC
Confidence 4433
No 213
>PRK04296 thymidine kinase; Provisional
Probab=96.51 E-value=0.0037 Score=63.95 Aligned_cols=112 Identities=16% Similarity=0.041 Sum_probs=61.0
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHhcccccceEEEeechhhhccCChHHHHHHHHHHHhcccC-CccccccchHHHHHhhh
Q 001458 20 RMIGICGMGGLGKTTIARVVYDLISHEFEASGFLDNVREISSKGGLVSLQRQLLSQLLKLAD-NSIWNVFDGIDMLGSRL 98 (1074)
Q Consensus 20 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~ll~~l~~~~~-~~~~~~~~~~~~i~~~L 98 (1074)
.++.|+|..|.||||+|..++.+...+-..+.++.- ......+.. .+.+++..... .......+....+++ .
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~--~~d~~~~~~----~i~~~lg~~~~~~~~~~~~~~~~~~~~-~ 75 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKP--AIDDRYGEG----KVVSRIGLSREAIPVSSDTDIFELIEE-E 75 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEec--cccccccCC----cEecCCCCcccceEeCChHHHHHHHHh-h
Confidence 478899999999999999999887655444444420 001111111 12222110000 001122333344444 2
Q ss_pred CCCeEEEEEcCCCCh--HHHHHHhcCCCCCCCCCEEEEEeCChh
Q 001458 99 QRKKVLLVIDDVVDV--KQLQSLAGNREWFGSGSRIIITSRDEH 140 (1074)
Q Consensus 99 ~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~gs~IiiTTR~~~ 140 (1074)
.++.-+||+|.+.-. +|+..+.... ...|..||+|.++..
T Consensus 76 ~~~~dvviIDEaq~l~~~~v~~l~~~l--~~~g~~vi~tgl~~~ 117 (190)
T PRK04296 76 GEKIDCVLIDEAQFLDKEQVVQLAEVL--DDLGIPVICYGLDTD 117 (190)
T ss_pred CCCCCEEEEEccccCCHHHHHHHHHHH--HHcCCeEEEEecCcc
Confidence 335568999998543 4444444332 147889999999843
No 214
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.50 E-value=0.0027 Score=60.33 Aligned_cols=38 Identities=32% Similarity=0.508 Sum_probs=29.1
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHhccc-ccceEE-Eeech
Q 001458 20 RMIGICGMGGLGKTTIARVVYDLISHE-FEASGF-LDNVR 57 (1074)
Q Consensus 20 ~vv~I~G~gGiGKTtLA~~v~~~~~~~-F~~~~~-~~~~~ 57 (1074)
.-|+|.||+|+||||+++.+++.++.. |...-| ...+|
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR 45 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVR 45 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeee
Confidence 458999999999999999999987665 654444 34443
No 215
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.48 E-value=0.0005 Score=82.28 Aligned_cols=58 Identities=34% Similarity=0.500 Sum_probs=26.7
Q ss_pred CCCCCEEeccCCCCC--ccccccccCCCCCCEEEecCCCCCCc--cchhhcCCCCCCEEEcC
Q 001458 566 LSGLVLLNLKNCRSL--EILPVTVSNLKCLRSLKLSGCSKLKK--FPEIVRSMKDLSELFLD 623 (1074)
Q Consensus 566 l~~L~~L~L~~~~~~--~~l~~~l~~l~~L~~L~Ls~~~~~~~--~p~~~~~l~~L~~L~L~ 623 (1074)
+++|+.|.+.+|... ..+-.....+++|++|++++|..... +.....++++|+.|.+.
T Consensus 268 c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~ 329 (482)
T KOG1947|consen 268 CPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLL 329 (482)
T ss_pred CCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhh
Confidence 445555555544421 11122233456666666666655422 22334445555554433
No 216
>PRK04132 replication factor C small subunit; Provisional
Probab=96.47 E-value=0.039 Score=68.20 Aligned_cols=149 Identities=14% Similarity=0.100 Sum_probs=89.6
Q ss_pred cCCCcHHHHHHHHHHHhc-ccccc-eEEEeechhhhccCChHHHHHHHHHHHhcccCCccccccchHHHHHhhhCCCeEE
Q 001458 27 MGGLGKTTIARVVYDLIS-HEFEA-SGFLDNVREISSKGGLVSLQRQLLSQLLKLADNSIWNVFDGIDMLGSRLQRKKVL 104 (1074)
Q Consensus 27 ~gGiGKTtLA~~v~~~~~-~~F~~-~~~~~~~~~~s~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~~kr~L 104 (1074)
|.|+||||+|.++++.+- +.+.. ...+. .+...+...+. +++......... -..+.-+
T Consensus 574 Ph~lGKTT~A~ala~~l~g~~~~~~~lElN----ASd~rgid~IR-~iIk~~a~~~~~---------------~~~~~KV 633 (846)
T PRK04132 574 PTVLHNTTAALALARELFGENWRHNFLELN----ASDERGINVIR-EKVKEFARTKPI---------------GGASFKI 633 (846)
T ss_pred CCcccHHHHHHHHHHhhhcccccCeEEEEe----CCCcccHHHHH-HHHHHHHhcCCc---------------CCCCCEE
Confidence 789999999999999762 22322 23333 23333444333 333332211100 0124579
Q ss_pred EEEcCCCChH--HHHHHhcCCCCCCCCCEEEEEeCCh-hhhhhc-CCCceecCCCCChHHHHHHHHHhhhcCCCCChhHH
Q 001458 105 LVIDDVVDVK--QLQSLAGNREWFGSGSRIIITSRDE-HLLKTH-GVDEVYKPHGLNYDEALQLFNMKAFKTYQPLQECV 180 (1074)
Q Consensus 105 lVLDdv~~~~--~l~~l~~~~~~~~~gs~IiiTTR~~-~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~ 180 (1074)
+|+|+++.+. +...|...........++|++|.+. .+.... .....+++++++.++-.+.+.+.+-...-.. ..
T Consensus 634 vIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~i--~~ 711 (846)
T PRK04132 634 IFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLEL--TE 711 (846)
T ss_pred EEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCCC--CH
Confidence 9999999875 4555555544445677777777664 333332 2356899999999999888877664322111 13
Q ss_pred HHHHHHHHHhCCCchHH
Q 001458 181 QLSARIIRYAGGLPLAL 197 (1074)
Q Consensus 181 ~~~~~i~~~~~GlPLal 197 (1074)
+....|++.++|.+-.+
T Consensus 712 e~L~~Ia~~s~GDlR~A 728 (846)
T PRK04132 712 EGLQAILYIAEGDMRRA 728 (846)
T ss_pred HHHHHHHHHcCCCHHHH
Confidence 46778999999988443
No 217
>CHL00195 ycf46 Ycf46; Provisional
Probab=96.43 E-value=0.021 Score=66.89 Aligned_cols=151 Identities=17% Similarity=0.141 Sum_probs=78.0
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHHHhcccccceEEEeechhhhcc-CC-hHHHHHHHHHHHhcccCCccccccchHHHHH
Q 001458 18 DVRMIGICGMGGLGKTTIARVVYDLISHEFEASGFLDNVREISSK-GG-LVSLQRQLLSQLLKLADNSIWNVFDGIDMLG 95 (1074)
Q Consensus 18 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~-~~-~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~ 95 (1074)
..+-|.++|++|.|||.+|+++++...-.| +-.+....... .+ .....++ .++
T Consensus 258 ~pkGILL~GPpGTGKTllAkaiA~e~~~~~----~~l~~~~l~~~~vGese~~l~~---------------------~f~ 312 (489)
T CHL00195 258 TPRGLLLVGIQGTGKSLTAKAIANDWQLPL----LRLDVGKLFGGIVGESESRMRQ---------------------MIR 312 (489)
T ss_pred CCceEEEECCCCCcHHHHHHHHHHHhCCCE----EEEEhHHhcccccChHHHHHHH---------------------HHH
Confidence 356789999999999999999998765332 11111111000 00 0011111 111
Q ss_pred hhhCCCeEEEEEcCCCChHH--------------HHHHhcCCCCCCCCCEEEEEeCChh-h----hhhcCCCceecCCCC
Q 001458 96 SRLQRKKVLLVIDDVVDVKQ--------------LQSLAGNREWFGSGSRIIITSRDEH-L----LKTHGVDEVYKPHGL 156 (1074)
Q Consensus 96 ~~L~~kr~LlVLDdv~~~~~--------------l~~l~~~~~~~~~gs~IiiTTR~~~-v----~~~~~~~~~~~l~~L 156 (1074)
..-...+.+|++|++|..-. +..+.........+--||.||.... + ......+..+.++..
T Consensus 313 ~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP 392 (489)
T CHL00195 313 IAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATANNIDLLPLEILRKGRFDEIFFLDLP 392 (489)
T ss_pred HHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEecCChhhCCHHHhCCCcCCeEEEeCCc
Confidence 11124678999999974310 1111111111123334556775543 2 121234567889999
Q ss_pred ChHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCCc
Q 001458 157 NYDEALQLFNMKAFKTYQPLQECVQLSARIIRYAGGLP 194 (1074)
Q Consensus 157 ~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlP 194 (1074)
+.++..++|..+.-+....... ......+++.+.|.-
T Consensus 393 ~~~eR~~Il~~~l~~~~~~~~~-~~dl~~La~~T~GfS 429 (489)
T CHL00195 393 SLEEREKIFKIHLQKFRPKSWK-KYDIKKLSKLSNKFS 429 (489)
T ss_pred CHHHHHHHHHHHHhhcCCCccc-ccCHHHHHhhcCCCC
Confidence 9999999998876442211000 111345556666654
No 218
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.41 E-value=0.0055 Score=62.78 Aligned_cols=36 Identities=19% Similarity=0.299 Sum_probs=27.0
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhcccccceEEEe
Q 001458 19 VRMIGICGMGGLGKTTIARVVYDLISHEFEASGFLD 54 (1074)
Q Consensus 19 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 54 (1074)
+++|.++|+.|+||||.+-+++.+.+.+-..+.+++
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis 36 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALIS 36 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEE
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeec
Confidence 378999999999999999999987665533444444
No 219
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.40 E-value=0.0074 Score=63.05 Aligned_cols=45 Identities=22% Similarity=0.267 Sum_probs=35.5
Q ss_pred HhhcCCCCCeEEEEEEccCCCcHHHHHHHHHHHhcccccceEEEe
Q 001458 10 FLMDSGSSDVRMIGICGMGGLGKTTIARVVYDLISHEFEASGFLD 54 (1074)
Q Consensus 10 ~lL~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 54 (1074)
++|..+-..-+++-|+|.+|.|||++|.+++.....+-..++|++
T Consensus 3 ~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~ 47 (209)
T TIGR02237 3 ELLGGGVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYID 47 (209)
T ss_pred hhhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 445544445689999999999999999999887655667788886
No 220
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.36 E-value=0.017 Score=61.14 Aligned_cols=50 Identities=22% Similarity=0.185 Sum_probs=38.3
Q ss_pred HHHHHHhhcCCCCCeEEEEEEccCCCcHHHHHHHHHHHhcccc------cceEEEe
Q 001458 5 CEKLRFLMDSGSSDVRMIGICGMGGLGKTTIARVVYDLISHEF------EASGFLD 54 (1074)
Q Consensus 5 ~~~l~~lL~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F------~~~~~~~ 54 (1074)
++.|..+|..+-..-.++.|+|.+|.|||++|..++......- ..++|+.
T Consensus 5 ~~~lD~~l~GG~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~ 60 (226)
T cd01393 5 SKALDELLGGGIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYID 60 (226)
T ss_pred cHHHHHHhCCCCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEe
Confidence 4567777865545567999999999999999999987654444 5567776
No 221
>PRK06762 hypothetical protein; Provisional
Probab=96.35 E-value=0.014 Score=58.43 Aligned_cols=25 Identities=40% Similarity=0.521 Sum_probs=22.9
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHh
Q 001458 19 VRMIGICGMGGLGKTTIARVVYDLI 43 (1074)
Q Consensus 19 ~~vv~I~G~gGiGKTtLA~~v~~~~ 43 (1074)
.++|.|.|+.|.||||+|++++++.
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999999876
No 222
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.34 E-value=0.012 Score=65.37 Aligned_cols=93 Identities=13% Similarity=0.116 Sum_probs=54.0
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhccccc-ceEEEeechhhhccCChHHHHHHHHHHHhcccCCccc----cccchHHHHH
Q 001458 21 MIGICGMGGLGKTTIARVVYDLISHEFE-ASGFLDNVREISSKGGLVSLQRQLLSQLLKLADNSIW----NVFDGIDMLG 95 (1074)
Q Consensus 21 vv~I~G~gGiGKTtLA~~v~~~~~~~F~-~~~~~~~~~~~s~~~~~~~l~~~ll~~l~~~~~~~~~----~~~~~~~~i~ 95 (1074)
-++|+|..|+|||||++.+++.+..+.+ ..+++.-+. .+...+.++.+.+...+......... ........+-
T Consensus 135 R~LIvG~pGtGKTTLl~~la~~i~~~~~dv~~vv~lIg--ER~~EV~df~~~i~~~Vvast~de~~~~~~~v~~~~~~~A 212 (380)
T PRK12608 135 RGLIVAPPRAGKTVLLQQIAAAVAANHPEVHLMVLLID--ERPEEVTDMRRSVKGEVYASTFDRPPDEHIRVAELVLERA 212 (380)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEEec--CCCCCHHHHHHHHhhhEEeecCCCCHHHHHHHHHHHHHHH
Confidence 4599999999999999999998766543 322332222 22346677777776654332211111 0110111111
Q ss_pred hhh--CCCeEEEEEcCCCChHH
Q 001458 96 SRL--QRKKVLLVIDDVVDVKQ 115 (1074)
Q Consensus 96 ~~L--~~kr~LlVLDdv~~~~~ 115 (1074)
+++ ++++++||+|++....+
T Consensus 213 e~f~~~GkdVVLvlDsltr~A~ 234 (380)
T PRK12608 213 KRLVEQGKDVVILLDSLTRLAR 234 (380)
T ss_pred HHHHHcCCCEEEEEeCcHHHHH
Confidence 112 57999999999876543
No 223
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=96.34 E-value=0.019 Score=59.99 Aligned_cols=142 Identities=20% Similarity=0.229 Sum_probs=78.9
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhcccccceEEEeechhhhccCChHHHHHHHHHHHhcccCCccccccchHHHHHhhh
Q 001458 19 VRMIGICGMGGLGKTTIARVVYDLISHEFEASGFLDNVREISSKGGLVSLQRQLLSQLLKLADNSIWNVFDGIDMLGSRL 98 (1074)
Q Consensus 19 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L 98 (1074)
.--|.++|++|.||||||.-+++.+...+... + .+ ..+-..+++.- -.-|
T Consensus 52 lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~t---------s-Gp-~leK~gDlaai-------------------Lt~L 101 (332)
T COG2255 52 LDHVLLFGPPGLGKTTLAHIIANELGVNLKIT---------S-GP-ALEKPGDLAAI-------------------LTNL 101 (332)
T ss_pred cCeEEeeCCCCCcHHHHHHHHHHHhcCCeEec---------c-cc-cccChhhHHHH-------------------HhcC
Confidence 55789999999999999999999876554321 1 00 00001111111 1112
Q ss_pred CCCeEEEEEcCCCChHH-HHHHh-cCCCC--------CCCCCEEE-----------EEeCChhhhh----hcCCCceecC
Q 001458 99 QRKKVLLVIDDVVDVKQ-LQSLA-GNREW--------FGSGSRII-----------ITSRDEHLLK----THGVDEVYKP 153 (1074)
Q Consensus 99 ~~kr~LlVLDdv~~~~~-l~~l~-~~~~~--------~~~gs~Ii-----------iTTR~~~v~~----~~~~~~~~~l 153 (1074)
+.. =++++|.+....- .++++ +...+ .|+++|.| -|||.-.+.. ..|. +.++
T Consensus 102 e~~-DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGATTr~G~lt~PLrdRFGi--~~rl 178 (332)
T COG2255 102 EEG-DVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGATTRAGMLTNPLRDRFGI--IQRL 178 (332)
T ss_pred CcC-CeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEeeeccccccccchhHHhcCC--eeee
Confidence 222 2455677765421 22221 11111 14555533 5788644322 2333 5677
Q ss_pred CCCChHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCCch
Q 001458 154 HGLNYDEALQLFNMKAFKTYQPLQECVQLSARIIRYAGGLPL 195 (1074)
Q Consensus 154 ~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPL 195 (1074)
+--+.+|-.++..+.|-.-.- +-..+-+.+|+++..|-|-
T Consensus 179 efY~~~eL~~Iv~r~a~~l~i--~i~~~~a~eIA~rSRGTPR 218 (332)
T COG2255 179 EFYTVEELEEIVKRSAKILGI--EIDEEAALEIARRSRGTPR 218 (332)
T ss_pred ecCCHHHHHHHHHHHHHHhCC--CCChHHHHHHHHhccCCcH
Confidence 777888888888887732111 1223567899999999994
No 224
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.33 E-value=0.0004 Score=63.82 Aligned_cols=104 Identities=22% Similarity=0.306 Sum_probs=59.2
Q ss_pred CCcEEeccCCCCC--CcCchhhhcCCCccEEEccCcCCccCchhhhc-CCCCCEEeccCCCCCccccccccCCCCCCEEE
Q 001458 521 CLSTLDVSGDLKF--REFPEIVEHMEHLSELHLEGTAIRGLPLSIEL-LSGLVLLNLKNCRSLEILPVTVSNLKCLRSLK 597 (1074)
Q Consensus 521 ~L~~L~L~~~~~~--~~~~~~l~~l~~L~~L~L~~~~i~~lp~~~~~-l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~ 597 (1074)
.+..++|+.|.+. ...+..+....+|+..+|++|.++++|..+.. ++.++.|+|.+|.
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~ne------------------- 88 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNE------------------- 88 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhh-------------------
Confidence 3556677777443 12233345556777778888888888776543 3455566665543
Q ss_pred ecCCCCCCccchhhcCCCCCCEEEcCCCcccccCcchhccCCCCEeecCCCC
Q 001458 598 LSGCSKLKKFPEIVRSMKDLSELFLDGTSIKEVPSSIELLTKLELLNLSDCK 649 (1074)
Q Consensus 598 Ls~~~~~~~~p~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~ 649 (1074)
+..+|..+..++.|+.|+++.|.+...|..+..+.+|-.|+..+|.
T Consensus 89 ------isdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~na 134 (177)
T KOG4579|consen 89 ------ISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPENA 134 (177)
T ss_pred ------hhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCCCCc
Confidence 2334444555555555555555555555555555555555555544
No 225
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.32 E-value=0.24 Score=55.29 Aligned_cols=91 Identities=18% Similarity=0.169 Sum_probs=57.6
Q ss_pred CCeEEEEEcCCCChH--HHHHHhcCCCCCCCCCEEEEEeCC-hhhhhhc-CCCceecCCCCChHHHHHHHHHhhhcCCCC
Q 001458 100 RKKVLLVIDDVVDVK--QLQSLAGNREWFGSGSRIIITSRD-EHLLKTH-GVDEVYKPHGLNYDEALQLFNMKAFKTYQP 175 (1074)
Q Consensus 100 ~kr~LlVLDdv~~~~--~l~~l~~~~~~~~~gs~IiiTTR~-~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~ 175 (1074)
+++=++|+|+++.+. ....|+..+.--.+++.+|++|.+ ..++.+. .....+.+.+++.++..+.+.... .+
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~----~~ 206 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG----VA 206 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC----CC
Confidence 345578889998764 344444433333467766655554 5555443 335688999999999999987652 11
Q ss_pred ChhHHHHHHHHHHHhCCCchHHHHH
Q 001458 176 LQECVQLSARIIRYAGGLPLALEVL 200 (1074)
Q Consensus 176 ~~~~~~~~~~i~~~~~GlPLal~~~ 200 (1074)
+ ...++..++|.|+....+
T Consensus 207 -~-----~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 207 -D-----ADALLAEAGGAPLAALAL 225 (342)
T ss_pred -h-----HHHHHHHcCCCHHHHHHH
Confidence 1 123577889999755444
No 226
>PRK07261 topology modulation protein; Provisional
Probab=96.32 E-value=0.013 Score=58.89 Aligned_cols=23 Identities=39% Similarity=0.544 Sum_probs=20.6
Q ss_pred EEEEEccCCCcHHHHHHHHHHHh
Q 001458 21 MIGICGMGGLGKTTIARVVYDLI 43 (1074)
Q Consensus 21 vv~I~G~gGiGKTtLA~~v~~~~ 43 (1074)
.|+|+|++|+||||||+++....
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 48999999999999999998754
No 227
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.27 E-value=0.0031 Score=61.09 Aligned_cols=23 Identities=39% Similarity=0.561 Sum_probs=21.2
Q ss_pred EEEEccCCCcHHHHHHHHHHHhc
Q 001458 22 IGICGMGGLGKTTIARVVYDLIS 44 (1074)
Q Consensus 22 v~I~G~gGiGKTtLA~~v~~~~~ 44 (1074)
|.++|.+|+|||+||+++++...
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~ 24 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLG 24 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhh
Confidence 67999999999999999999873
No 228
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.26 E-value=0.029 Score=63.18 Aligned_cols=133 Identities=19% Similarity=0.122 Sum_probs=71.7
Q ss_pred HHHHHHHhhcCCCCCeEEEEEEccCCCcHHHHHHHHHHHhcccc---------------------cceEEEeechhhhcc
Q 001458 4 RCEKLRFLMDSGSSDVRMIGICGMGGLGKTTIARVVYDLISHEF---------------------EASGFLDNVREISSK 62 (1074)
Q Consensus 4 ~~~~l~~lL~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F---------------------~~~~~~~~~~~~s~~ 62 (1074)
.+.++..+........+.+-++|+.|+||||+|.++++.+.... +....+. .+..
T Consensus 9 ~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~----~s~~ 84 (325)
T COG0470 9 AVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELN----PSDL 84 (325)
T ss_pred HHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEec----cccc
Confidence 34555555553333355699999999999999999998765322 1222222 1111
Q ss_pred CC---hHHHHHHHHHHHhcccCCccccccchHHHHHhhhCCCeEEEEEcCCCChHH--HHHHhcCCCCCCCCCEEEEEeC
Q 001458 63 GG---LVSLQRQLLSQLLKLADNSIWNVFDGIDMLGSRLQRKKVLLVIDDVVDVKQ--LQSLAGNREWFGSGSRIIITSR 137 (1074)
Q Consensus 63 ~~---~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~~kr~LlVLDdv~~~~~--l~~l~~~~~~~~~gs~IiiTTR 137 (1074)
.. ..+..+++.+..... ...+++-++|+|+++.+.. -..+.....-.....++|++|.
T Consensus 85 ~~~~i~~~~vr~~~~~~~~~-----------------~~~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~~n 147 (325)
T COG0470 85 RKIDIIVEQVRELAEFLSES-----------------PLEGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILITN 147 (325)
T ss_pred CCCcchHHHHHHHHHHhccC-----------------CCCCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEEcC
Confidence 11 122222222221100 0035678899999998753 3444433333357788888887
Q ss_pred C-hhhhhhc-CCCceecCCCCC
Q 001458 138 D-EHLLKTH-GVDEVYKPHGLN 157 (1074)
Q Consensus 138 ~-~~v~~~~-~~~~~~~l~~L~ 157 (1074)
+ ..+.... .....+++++.+
T Consensus 148 ~~~~il~tI~SRc~~i~f~~~~ 169 (325)
T COG0470 148 DPSKILPTIRSRCQRIRFKPPS 169 (325)
T ss_pred ChhhccchhhhcceeeecCCch
Confidence 4 3343322 223455666533
No 229
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.23 E-value=0.0088 Score=58.37 Aligned_cols=118 Identities=15% Similarity=0.149 Sum_probs=59.4
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHhcccccceEEEeechhhhccCChHHHHHHHHHHHh--ccc-------CCc---cccc
Q 001458 20 RMIGICGMGGLGKTTIARVVYDLISHEFEASGFLDNVREISSKGGLVSLQRQLLSQLL--KLA-------DNS---IWNV 87 (1074)
Q Consensus 20 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~ll~~l~--~~~-------~~~---~~~~ 87 (1074)
.+|-|++-.|.||||+|..++-+...+=-.+.++.=++.. ...+-....+.+ ..+. ... ... ....
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~-~~~gE~~~l~~l-~~v~~~~~g~~~~~~~~~~~~~~~~a 80 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGG-WKYGELKALERL-PNIEIHRMGRGFFWTTENDEEDIAAA 80 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCC-CccCHHHHHHhC-CCcEEEECCCCCccCCCChHHHHHHH
Confidence 3678888889999999999987665554444554322211 111222222222 0000 000 000 0011
Q ss_pred cchHHHHHhhhCC-CeEEEEEcCCCChH-----HHHHHhcCCCCCCCCCEEEEEeCCh
Q 001458 88 FDGIDMLGSRLQR-KKVLLVIDDVVDVK-----QLQSLAGNREWFGSGSRIIITSRDE 139 (1074)
Q Consensus 88 ~~~~~~i~~~L~~-kr~LlVLDdv~~~~-----~l~~l~~~~~~~~~gs~IiiTTR~~ 139 (1074)
.++.+..++.+.. +-=|||||++...- +.+.+...+....++.-||+|.|+.
T Consensus 81 ~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~ 138 (159)
T cd00561 81 AEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNA 138 (159)
T ss_pred HHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCC
Confidence 1223344455544 34599999985431 1222222222234678899999984
No 230
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.21 E-value=0.032 Score=56.42 Aligned_cols=36 Identities=36% Similarity=0.593 Sum_probs=31.6
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhcccccceEEEe
Q 001458 19 VRMIGICGMGGLGKTTIARVVYDLISHEFEASGFLD 54 (1074)
Q Consensus 19 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 54 (1074)
..+|.+.|+.|.||||+|++++++....+...+++.
T Consensus 7 ~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~ 42 (176)
T PRK05541 7 GYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLD 42 (176)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEe
Confidence 468999999999999999999999887777777764
No 231
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.19 E-value=0.0041 Score=64.23 Aligned_cols=88 Identities=23% Similarity=0.258 Sum_probs=59.8
Q ss_pred CCCCCCCccEEecCCC--CCCCCCCccccCCCCCCCeEecCCCcCcccC--ccccccCCCCEeeccCCcCCCcCC-----
Q 001458 723 SLSGLCSLRKLNLTDC--NLMEGALPSDIGNLCSLKELYLSKNSFVSLP--TSITHLSKLLNIELEDCKRLQSLP----- 793 (1074)
Q Consensus 723 ~l~~l~~L~~L~Ls~~--~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~lp--~~i~~l~~L~~L~L~~c~~L~~lp----- 793 (1074)
.+..+++|++|.++.| .... .++.....+++|++|+|++|.+..+. ..+..+.+|..|++.+|+-.+.-.
T Consensus 60 ~~P~Lp~LkkL~lsdn~~~~~~-~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~v 138 (260)
T KOG2739|consen 60 NFPKLPKLKKLELSDNYRRVSG-GLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKV 138 (260)
T ss_pred cCCCcchhhhhcccCCcccccc-cceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHH
Confidence 3556788999999998 4443 44444556699999999999877421 145678888899999987554111
Q ss_pred -CCCCCcceEeecCccccc
Q 001458 794 -QLPPNIRQVRVNGCASLV 811 (1074)
Q Consensus 794 -~lp~sL~~L~i~~C~~L~ 811 (1074)
.+-++|+.|+-.++..-+
T Consensus 139 f~ll~~L~~LD~~dv~~~E 157 (260)
T KOG2739|consen 139 FLLLPSLKYLDGCDVDGEE 157 (260)
T ss_pred HHHhhhhccccccccCCcc
Confidence 245777777766665433
No 232
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=96.17 E-value=0.14 Score=56.92 Aligned_cols=85 Identities=16% Similarity=0.144 Sum_probs=47.7
Q ss_pred CeEEEEEcCCCChH--HHHHHhcCCCCCCCCCEEEEEeCCh-hhhhhc-CCCceecCCCCChHHHHHHHHHhhhcCCCCC
Q 001458 101 KKVLLVIDDVVDVK--QLQSLAGNREWFGSGSRIIITSRDE-HLLKTH-GVDEVYKPHGLNYDEALQLFNMKAFKTYQPL 176 (1074)
Q Consensus 101 kr~LlVLDdv~~~~--~l~~l~~~~~~~~~gs~IiiTTR~~-~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~ 176 (1074)
+|++ |+|+++..+ .-..+...+....++..+|++|.+. .+.... .....+.+.+++.+++.+.+.... . .
T Consensus 114 ~kV~-iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~~---~-~- 187 (325)
T PRK08699 114 LRVI-LIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRERG---V-A- 187 (325)
T ss_pred ceEE-EEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhcC---C-C-
Confidence 4454 568887653 2222222221113456677777764 344332 234578999999999998886542 1 1
Q ss_pred hhHHHHHHHHHHHhCCCchH
Q 001458 177 QECVQLSARIIRYAGGLPLA 196 (1074)
Q Consensus 177 ~~~~~~~~~i~~~~~GlPLa 196 (1074)
... ..+..++|-|+.
T Consensus 188 ~~~-----~~l~~~~g~p~~ 202 (325)
T PRK08699 188 EPE-----ERLAFHSGAPLF 202 (325)
T ss_pred cHH-----HHHHHhCCChhh
Confidence 111 123568898864
No 233
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.17 E-value=0.052 Score=68.08 Aligned_cols=150 Identities=16% Similarity=0.131 Sum_probs=75.9
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhcccccceEEEeechhhhcc-CC-hHHHHHHHHHHHhcccCCccccccchHHHHHh
Q 001458 19 VRMIGICGMGGLGKTTIARVVYDLISHEFEASGFLDNVREISSK-GG-LVSLQRQLLSQLLKLADNSIWNVFDGIDMLGS 96 (1074)
Q Consensus 19 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~-~~-~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~ 96 (1074)
.+-|.++|++|.||||+|+++++.....| +.+. ..+.... .+ ..... ...+..
T Consensus 212 ~~giLL~GppGtGKT~laraia~~~~~~~---i~i~-~~~i~~~~~g~~~~~l---------------------~~lf~~ 266 (733)
T TIGR01243 212 PKGVLLYGPPGTGKTLLAKAVANEAGAYF---ISIN-GPEIMSKYYGESEERL---------------------REIFKE 266 (733)
T ss_pred CceEEEECCCCCChHHHHHHHHHHhCCeE---EEEe-cHHHhcccccHHHHHH---------------------HHHHHH
Confidence 46789999999999999999998765443 1221 1111111 00 00111 111222
Q ss_pred hhCCCeEEEEEcCCCChH-------------HHHHHhcCCCCC-CCCCEEEE-EeCChh-hhhhc----CCCceecCCCC
Q 001458 97 RLQRKKVLLVIDDVVDVK-------------QLQSLAGNREWF-GSGSRIII-TSRDEH-LLKTH----GVDEVYKPHGL 156 (1074)
Q Consensus 97 ~L~~kr~LlVLDdv~~~~-------------~l~~l~~~~~~~-~~gs~Iii-TTR~~~-v~~~~----~~~~~~~l~~L 156 (1074)
.......+|++|+++... ....+....... ..+..++| ||.... +.... ..+..+.+...
T Consensus 267 a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vivI~atn~~~~ld~al~r~gRfd~~i~i~~P 346 (733)
T TIGR01243 267 AEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIVIGATNRPDALDPALRRPGRFDREIVIRVP 346 (733)
T ss_pred HHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEEEeecCChhhcCHHHhCchhccEEEEeCCc
Confidence 223456789999986431 122222222111 23444454 444322 21111 12446778888
Q ss_pred ChHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCCchH
Q 001458 157 NYDEALQLFNMKAFKTYQPLQECVQLSARIIRYAGGLPLA 196 (1074)
Q Consensus 157 ~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLa 196 (1074)
+.++..+++..+.-... ..+ ......+++.+.|..-|
T Consensus 347 ~~~~R~~Il~~~~~~~~-l~~--d~~l~~la~~t~G~~ga 383 (733)
T TIGR01243 347 DKRARKEILKVHTRNMP-LAE--DVDLDKLAEVTHGFVGA 383 (733)
T ss_pred CHHHHHHHHHHHhcCCC-Ccc--ccCHHHHHHhCCCCCHH
Confidence 88888888885542211 111 11245677777776543
No 234
>PRK07667 uridine kinase; Provisional
Probab=96.13 E-value=0.0097 Score=61.12 Aligned_cols=41 Identities=22% Similarity=0.322 Sum_probs=32.3
Q ss_pred HHHHHHhhcCCCCCeEEEEEEccCCCcHHHHHHHHHHHhcc
Q 001458 5 CEKLRFLMDSGSSDVRMIGICGMGGLGKTTIARVVYDLISH 45 (1074)
Q Consensus 5 ~~~l~~lL~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 45 (1074)
++.+...+........+|||.|.+|.||||+|+.+...+..
T Consensus 3 ~~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l~~ 43 (193)
T PRK07667 3 TNELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENMKQ 43 (193)
T ss_pred HHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 44555666554556689999999999999999999987654
No 235
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=96.13 E-value=0.034 Score=65.42 Aligned_cols=136 Identities=18% Similarity=0.285 Sum_probs=75.8
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHHHhcccccceEEEeechhhhccCChHHHHHHHHHHHhcccCCccccccch-HHHHHh
Q 001458 18 DVRMIGICGMGGLGKTTIARVVYDLISHEFEASGFLDNVREISSKGGLVSLQRQLLSQLLKLADNSIWNVFDG-IDMLGS 96 (1074)
Q Consensus 18 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~-~~~i~~ 96 (1074)
+-.+++++|++|||||.||+.+++.....|-.... --+|..++-.| -...-+...+-. ++.+ .
T Consensus 349 kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sL-GGvrDEAEIRG--------------HRRTYIGamPGrIiQ~m-k 412 (782)
T COG0466 349 KGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISL-GGVRDEAEIRG--------------HRRTYIGAMPGKIIQGM-K 412 (782)
T ss_pred CCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEec-CccccHHHhcc--------------ccccccccCChHHHHHH-H
Confidence 34799999999999999999999988887754332 11221111000 000111111111 1111 2
Q ss_pred hhCCCeEEEEEcCCCChHH----------HHHHhcCCC-CCC--------CCCEEE-EEeCCh-h-h-hhhcCCCceecC
Q 001458 97 RLQRKKVLLVIDDVVDVKQ----------LQSLAGNRE-WFG--------SGSRII-ITSRDE-H-L-LKTHGVDEVYKP 153 (1074)
Q Consensus 97 ~L~~kr~LlVLDdv~~~~~----------l~~l~~~~~-~~~--------~gs~Ii-iTTR~~-~-v-~~~~~~~~~~~l 153 (1074)
..+.+.=+++||.+|.+.. +|.|-+..+ .|. -=|.|+ |||-+. + + +..+...+++++
T Consensus 413 ka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTANsl~tIP~PLlDRMEiI~l 492 (782)
T COG0466 413 KAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATANSLDTIPAPLLDRMEVIRL 492 (782)
T ss_pred HhCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheEEEeecCccccCChHHhcceeeeee
Confidence 2345677899999986531 333332211 111 124444 455442 1 2 223345678999
Q ss_pred CCCChHHHHHHHHHhh
Q 001458 154 HGLNYDEALQLFNMKA 169 (1074)
Q Consensus 154 ~~L~~~ea~~Lf~~~a 169 (1074)
.+-+++|-+++-++|.
T Consensus 493 sgYt~~EKl~IAk~~L 508 (782)
T COG0466 493 SGYTEDEKLEIAKRHL 508 (782)
T ss_pred cCCChHHHHHHHHHhc
Confidence 9999999998888775
No 236
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.08 E-value=0.064 Score=67.26 Aligned_cols=148 Identities=14% Similarity=0.143 Sum_probs=78.6
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhcccccceEEEeechhhhccCChHHHHHHHHHHHhcccCCccccccchHHHHH-hh
Q 001458 19 VRMIGICGMGGLGKTTIARVVYDLISHEFEASGFLDNVREISSKGGLVSLQRQLLSQLLKLADNSIWNVFDGIDMLG-SR 97 (1074)
Q Consensus 19 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~-~~ 97 (1074)
.+-|.++|++|.|||++|+++++.....|- .+. .. +++....+ ..+..+..+- ..
T Consensus 487 ~~giLL~GppGtGKT~lakalA~e~~~~fi---~v~-~~-------------~l~~~~vG-------ese~~i~~~f~~A 542 (733)
T TIGR01243 487 PKGVLLFGPPGTGKTLLAKAVATESGANFI---AVR-GP-------------EILSKWVG-------ESEKAIREIFRKA 542 (733)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhcCCCEE---EEe-hH-------------HHhhcccC-------cHHHHHHHHHHHH
Confidence 456889999999999999999997654431 111 10 11111110 0001111111 11
Q ss_pred hCCCeEEEEEcCCCChH--------------HHHHHhcCCCCC--CCCCEEEEEeCChhhhhh-c----CCCceecCCCC
Q 001458 98 LQRKKVLLVIDDVVDVK--------------QLQSLAGNREWF--GSGSRIIITSRDEHLLKT-H----GVDEVYKPHGL 156 (1074)
Q Consensus 98 L~~kr~LlVLDdv~~~~--------------~l~~l~~~~~~~--~~gs~IiiTTR~~~v~~~-~----~~~~~~~l~~L 156 (1074)
-+..+.+|++|+++... ....++...+.. ..+-.||.||...+.+.. . ..+..+.++..
T Consensus 543 ~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~P 622 (733)
T TIGR01243 543 RQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDILDPALLRPGRFDRLILVPPP 622 (733)
T ss_pred HhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCc
Confidence 23456899999986431 122333322211 234455666655443221 1 23567889999
Q ss_pred ChHHHHHHHHHhhhcCCC-CChhHHHHHHHHHHHhCCCc
Q 001458 157 NYDEALQLFNMKAFKTYQ-PLQECVQLSARIIRYAGGLP 194 (1074)
Q Consensus 157 ~~~ea~~Lf~~~a~~~~~-~~~~~~~~~~~i~~~~~GlP 194 (1074)
+.++..++|..+.-+... +..+ ...+++.+.|.-
T Consensus 623 d~~~R~~i~~~~~~~~~~~~~~~----l~~la~~t~g~s 657 (733)
T TIGR01243 623 DEEARKEIFKIHTRSMPLAEDVD----LEELAEMTEGYT 657 (733)
T ss_pred CHHHHHHHHHHHhcCCCCCccCC----HHHHHHHcCCCC
Confidence 999999999766532221 1122 234556666654
No 237
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.06 E-value=0.0024 Score=65.88 Aligned_cols=61 Identities=23% Similarity=0.195 Sum_probs=28.8
Q ss_pred CCccEEecCCCCCCCCCCccccCCCCCCCeEecCCCcCcccCc----cccccCCCCEeeccCCcC
Q 001458 728 CSLRKLNLTDCNLMEGALPSDIGNLCSLKELYLSKNSFVSLPT----SITHLSKLLNIELEDCKR 788 (1074)
Q Consensus 728 ~~L~~L~Ls~~~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~lp~----~i~~l~~L~~L~L~~c~~ 788 (1074)
|+|++|++++|.+..-.--..+..+.+|..|++.+|..+.+-. .+.-+++|+.|+-.++..
T Consensus 91 P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~~ 155 (260)
T KOG2739|consen 91 PNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVDG 155 (260)
T ss_pred CceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccccccCC
Confidence 4444444444444210011112334455555555554443311 245567777777666543
No 238
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.04 E-value=0.041 Score=67.91 Aligned_cols=145 Identities=17% Similarity=0.148 Sum_probs=76.1
Q ss_pred hhHHHHHHHhhcCCCCCeEEEEEEccCCCcHHHHHHHHHHHhccc-----c-cceEEEeechhhhccCChHHHHHHHHHH
Q 001458 2 DSRCEKLRFLMDSGSSDVRMIGICGMGGLGKTTIARVVYDLISHE-----F-EASGFLDNVREISSKGGLVSLQRQLLSQ 75 (1074)
Q Consensus 2 ~~~~~~l~~lL~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-----F-~~~~~~~~~~~~s~~~~~~~l~~~ll~~ 75 (1074)
+.+++++...|..... .-+.++|.+|+|||++|+.+++++... + ...+|..+. . .++.
T Consensus 192 ~~ei~~~i~iL~r~~~--~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~---------~----~lla- 255 (758)
T PRK11034 192 EKELERAIQVLCRRRK--NNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDI---------G----SLLA- 255 (758)
T ss_pred CHHHHHHHHHHhccCC--CCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccH---------H----HHhc-
Confidence 4567777777764322 234689999999999999999865322 1 222232111 0 1110
Q ss_pred HhcccCCccccccchHHHHHhhh-CCCeEEEEEcCCCCh----------HHHHH-HhcCCCCCCCC-CEEEEEeCChhhh
Q 001458 76 LLKLADNSIWNVFDGIDMLGSRL-QRKKVLLVIDDVVDV----------KQLQS-LAGNREWFGSG-SRIIITSRDEHLL 142 (1074)
Q Consensus 76 l~~~~~~~~~~~~~~~~~i~~~L-~~kr~LlVLDdv~~~----------~~l~~-l~~~~~~~~~g-s~IiiTTR~~~v~ 142 (1074)
+ .....+.++....+.+.+ +.++.+|++|+++.. .+... +.+.+ ..| -+||-+|...+..
T Consensus 256 --G--~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L---~~g~i~vIgATt~~E~~ 328 (758)
T PRK11034 256 --G--TKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLL---SSGKIRVIGSTTYQEFS 328 (758)
T ss_pred --c--cchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHH---hCCCeEEEecCChHHHH
Confidence 0 000112222223332323 345689999999743 12222 22222 233 3444444433321
Q ss_pred hh-------cCCCceecCCCCChHHHHHHHHHhh
Q 001458 143 KT-------HGVDEVYKPHGLNYDEALQLFNMKA 169 (1074)
Q Consensus 143 ~~-------~~~~~~~~l~~L~~~ea~~Lf~~~a 169 (1074)
.. ...-..+.++.++.+++.+++....
T Consensus 329 ~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 329 NIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred HHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 11 1123478999999999999998654
No 239
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.04 E-value=0.048 Score=63.50 Aligned_cols=132 Identities=17% Similarity=0.189 Sum_probs=74.4
Q ss_pred CCCeEEEEEEccCCCcHHHHHHHHHHHhcccccceEEEeechh-hhcc-CChHHHHHHHHHHHhcccCCccccccchHHH
Q 001458 16 SSDVRMIGICGMGGLGKTTIARVVYDLISHEFEASGFLDNVRE-ISSK-GGLVSLQRQLLSQLLKLADNSIWNVFDGIDM 93 (1074)
Q Consensus 16 ~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~-~s~~-~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~ 93 (1074)
-+-.+=|..+|++|.||||+|+++++.-+-.|-.+- -.+ .+.. ..-++..++++++.
T Consensus 465 i~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvk----gpEL~sk~vGeSEr~ir~iF~kA----------------- 523 (693)
T KOG0730|consen 465 ISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVK----GPELFSKYVGESERAIREVFRKA----------------- 523 (693)
T ss_pred CCCCceEEEECCCCcchHHHHHHHhhhhcCCeeecc----CHHHHHHhcCchHHHHHHHHHHH-----------------
Confidence 344677899999999999999999997665553220 000 0000 11122233333321
Q ss_pred HHhhhCCCeEEEEEcCCCChH-------------HHHHHhcCCCCCCCCCEEEE---EeCChhhhhh-c---CCCceecC
Q 001458 94 LGSRLQRKKVLLVIDDVVDVK-------------QLQSLAGNREWFGSGSRIII---TSRDEHLLKT-H---GVDEVYKP 153 (1074)
Q Consensus 94 i~~~L~~kr~LlVLDdv~~~~-------------~l~~l~~~~~~~~~gs~Iii---TTR~~~v~~~-~---~~~~~~~l 153 (1074)
=+--..+|.||.+|... -+..|+...+-......|+| |.|...+-.. + ..+..+-+
T Consensus 524 ----R~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyV 599 (693)
T KOG0730|consen 524 ----RQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPALLRPGRLDRIIYV 599 (693)
T ss_pred ----hhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEeccCChhhcCHHHcCCcccceeEee
Confidence 01234788888876432 14444444443333333443 3344433222 2 24677888
Q ss_pred CCCChHHHHHHHHHhhhcC
Q 001458 154 HGLNYDEALQLFNMKAFKT 172 (1074)
Q Consensus 154 ~~L~~~ea~~Lf~~~a~~~ 172 (1074)
+.-+.+...++|+.++-+-
T Consensus 600 plPD~~aR~~Ilk~~~kkm 618 (693)
T KOG0730|consen 600 PLPDLEARLEILKQCAKKM 618 (693)
T ss_pred cCccHHHHHHHHHHHHhcC
Confidence 8888888999999988543
No 240
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.03 E-value=0.048 Score=60.77 Aligned_cols=37 Identities=27% Similarity=0.384 Sum_probs=27.9
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHHHhcccccceEEEe
Q 001458 18 DVRMIGICGMGGLGKTTIARVVYDLISHEFEASGFLD 54 (1074)
Q Consensus 18 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 54 (1074)
+.++|+++|++|+||||++..++..+..+-..+.++.
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~ 276 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFIT 276 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEe
Confidence 4689999999999999999999876654323344443
No 241
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.03 E-value=0.03 Score=57.19 Aligned_cols=117 Identities=18% Similarity=0.303 Sum_probs=54.0
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHH--hcccccceEEEeechhhhccCCh--HHHHHHH---HHHHhcccCCccccccchH
Q 001458 19 VRMIGICGMGGLGKTTIARVVYDL--ISHEFEASGFLDNVREISSKGGL--VSLQRQL---LSQLLKLADNSIWNVFDGI 91 (1074)
Q Consensus 19 ~~vv~I~G~gGiGKTtLA~~v~~~--~~~~F~~~~~~~~~~~~s~~~~~--~~l~~~l---l~~l~~~~~~~~~~~~~~~ 91 (1074)
..+|.+.|++|.|||.||.+.+-+ ..+.|+..++....-++.+.-+. -++.+++ +..+...-..- .. .+..
T Consensus 19 ~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~~~p~~d~l~~~-~~-~~~~ 96 (205)
T PF02562_consen 19 NDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKMEPYLRPIYDALEEL-FG-KEKL 96 (205)
T ss_dssp -SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS---------TTTHHHHHHHTTT-S--TTCH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHHHHHHHHHHHHHHHHH-hC-hHhH
Confidence 458999999999999999988853 24778888777644322221111 1111111 11110000000 00 1111
Q ss_pred HHHH----------hhhCCC---eEEEEEcCCCCh--HHHHHHhcCCCCCCCCCEEEEEeCChh
Q 001458 92 DMLG----------SRLQRK---KVLLVIDDVVDV--KQLQSLAGNREWFGSGSRIIITSRDEH 140 (1074)
Q Consensus 92 ~~i~----------~~L~~k---r~LlVLDdv~~~--~~l~~l~~~~~~~~~gs~IiiTTR~~~ 140 (1074)
+.+. ..++++ ..+||+|++.+. +++..+... .|.||+||++--..+
T Consensus 97 ~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~ilTR---~g~~skii~~GD~~Q 157 (205)
T PF02562_consen 97 EELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMILTR---IGEGSKIIITGDPSQ 157 (205)
T ss_dssp HHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHTT---B-TT-EEEEEE----
T ss_pred HHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHHcc---cCCCcEEEEecCcee
Confidence 2211 244553 469999999765 477777655 479999999966543
No 242
>PRK06696 uridine kinase; Validated
Probab=96.01 E-value=0.011 Score=62.26 Aligned_cols=44 Identities=20% Similarity=0.169 Sum_probs=33.5
Q ss_pred hHHHHHHHhhcC-CCCCeEEEEEEccCCCcHHHHHHHHHHHhccc
Q 001458 3 SRCEKLRFLMDS-GSSDVRMIGICGMGGLGKTTIARVVYDLISHE 46 (1074)
Q Consensus 3 ~~~~~l~~lL~~-~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 46 (1074)
..+++|...+.. ......+|+|.|.+|.||||+|+++++.+...
T Consensus 5 ~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~ 49 (223)
T PRK06696 5 QLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIKKR 49 (223)
T ss_pred HHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 345566555543 34568899999999999999999999877543
No 243
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.01 E-value=0.023 Score=56.55 Aligned_cols=80 Identities=15% Similarity=0.147 Sum_probs=47.7
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhcccccceEEEeechhhhccCChHHHHHHHHHHHhcccCCccccccchHHHHHhhhCC
Q 001458 21 MIGICGMGGLGKTTIARVVYDLISHEFEASGFLDNVREISSKGGLVSLQRQLLSQLLKLADNSIWNVFDGIDMLGSRLQR 100 (1074)
Q Consensus 21 vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~~ 100 (1074)
++.|.|..|.|||++|.++... .....+|+. .....+ .++++.+.+.. ... ...+...+....+.+.+..
T Consensus 1 ~~li~G~~~sGKS~~a~~~~~~---~~~~~~y~a----t~~~~d-~em~~rI~~H~-~~R-~~~w~t~E~~~~l~~~l~~ 70 (169)
T cd00544 1 IILVTGGARSGKSRFAERLAAE---LGGPVTYIA----TAEAFD-DEMAERIARHR-KRR-PAHWRTIETPRDLVSALKE 70 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHHh---cCCCeEEEE----ccCcCC-HHHHHHHHHHH-HhC-CCCceEeecHHHHHHHHHh
Confidence 3679999999999999999865 234566775 222233 34555554432 222 3334444554555555532
Q ss_pred --CeEEEEEcCC
Q 001458 101 --KKVLLVIDDV 110 (1074)
Q Consensus 101 --kr~LlVLDdv 110 (1074)
+.-.+++|.+
T Consensus 71 ~~~~~~VLIDcl 82 (169)
T cd00544 71 LDPGDVVLIDCL 82 (169)
T ss_pred cCCCCEEEEEcH
Confidence 2337899996
No 244
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=96.01 E-value=0.02 Score=64.67 Aligned_cols=50 Identities=22% Similarity=0.229 Sum_probs=38.2
Q ss_pred HHHHHHhhcCCCCCeEEEEEEccCCCcHHHHHHHHHHHhcccccceEEEe
Q 001458 5 CEKLRFLMDSGSSDVRMIGICGMGGLGKTTIARVVYDLISHEFEASGFLD 54 (1074)
Q Consensus 5 ~~~l~~lL~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 54 (1074)
+.++.++|..+-..-.++.|.|.+|+|||||+.+++......-..++|+.
T Consensus 68 i~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs 117 (372)
T cd01121 68 IEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVS 117 (372)
T ss_pred CHHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 45677777644444578999999999999999999987765545667765
No 245
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.01 E-value=0.017 Score=67.26 Aligned_cols=73 Identities=22% Similarity=0.323 Sum_probs=47.4
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHhcccccc-eEEEeechhhhccCChHHHHHHHHHHHhcccCCccccccchHHHHHhhh
Q 001458 20 RMIGICGMGGLGKTTIARVVYDLISHEFEA-SGFLDNVREISSKGGLVSLQRQLLSQLLKLADNSIWNVFDGIDMLGSRL 98 (1074)
Q Consensus 20 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~-~~~~~~~~~~s~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L 98 (1074)
.-|-|.|..|+|||+||+++++.+...-.+ +.+++ +... ....+..+|+.+..- +-+.+
T Consensus 432 ~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~-Cs~l-~~~~~e~iQk~l~~v------------------fse~~ 491 (952)
T KOG0735|consen 432 GNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVS-CSTL-DGSSLEKIQKFLNNV------------------FSEAL 491 (952)
T ss_pred ccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEe-chhc-cchhHHHHHHHHHHH------------------HHHHH
Confidence 358899999999999999999976543222 23333 2222 223355555554333 33455
Q ss_pred CCCeEEEEEcCCCC
Q 001458 99 QRKKVLLVIDDVVD 112 (1074)
Q Consensus 99 ~~kr~LlVLDdv~~ 112 (1074)
...+-+|||||++-
T Consensus 492 ~~~PSiIvLDdld~ 505 (952)
T KOG0735|consen 492 WYAPSIIVLDDLDC 505 (952)
T ss_pred hhCCcEEEEcchhh
Confidence 67889999999964
No 246
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=95.99 E-value=0.05 Score=55.46 Aligned_cols=29 Identities=17% Similarity=0.277 Sum_probs=25.9
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhcccccc
Q 001458 21 MIGICGMGGLGKTTIARVVYDLISHEFEA 49 (1074)
Q Consensus 21 vv~I~G~gGiGKTtLA~~v~~~~~~~F~~ 49 (1074)
-|.+||--|+||+.|++++.+.+.++.-.
T Consensus 87 nVLLwGaRGtGKSSLVKA~~~e~~~~glr 115 (287)
T COG2607 87 NVLLWGARGTGKSSLVKALLNEYADEGLR 115 (287)
T ss_pred ceEEecCCCCChHHHHHHHHHHHHhcCCe
Confidence 47899999999999999999998887665
No 247
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=95.98 E-value=0.057 Score=66.16 Aligned_cols=129 Identities=15% Similarity=0.170 Sum_probs=70.4
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHhcccccceEEEeechhhhccCChHHHHHHHHHHHhcccCCccccccchHHHHHhhhC
Q 001458 20 RMIGICGMGGLGKTTIARVVYDLISHEFEASGFLDNVREISSKGGLVSLQRQLLSQLLKLADNSIWNVFDGIDMLGSRLQ 99 (1074)
Q Consensus 20 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~ 99 (1074)
+-|.++|++|.||||+|+.+++.....|- .+. .. ++.. ..... ........+.....
T Consensus 186 ~gill~G~~G~GKt~~~~~~a~~~~~~f~---~is-~~---------~~~~----~~~g~------~~~~~~~~f~~a~~ 242 (644)
T PRK10733 186 KGVLMVGPPGTGKTLLAKAIAGEAKVPFF---TIS-GS---------DFVE----MFVGV------GASRVRDMFEQAKK 242 (644)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHcCCCEE---EEe-hH---------HhHH----hhhcc------cHHHHHHHHHHHHh
Confidence 34899999999999999999987654431 111 10 0000 00000 00001111222223
Q ss_pred CCeEEEEEcCCCChH----------------HHHHHhcCCCCCC--CCCEEEEEeCChhhhhh-c----CCCceecCCCC
Q 001458 100 RKKVLLVIDDVVDVK----------------QLQSLAGNREWFG--SGSRIIITSRDEHLLKT-H----GVDEVYKPHGL 156 (1074)
Q Consensus 100 ~kr~LlVLDdv~~~~----------------~l~~l~~~~~~~~--~gs~IiiTTR~~~v~~~-~----~~~~~~~l~~L 156 (1074)
..+.+|++|++|... .+..+....+-+. .+..||.||...+.+.. . ..+..+.+...
T Consensus 243 ~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~P 322 (644)
T PRK10733 243 AAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLP 322 (644)
T ss_pred cCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCC
Confidence 467899999987641 1233332222222 34445557766543222 1 23567888888
Q ss_pred ChHHHHHHHHHhhhc
Q 001458 157 NYDEALQLFNMKAFK 171 (1074)
Q Consensus 157 ~~~ea~~Lf~~~a~~ 171 (1074)
+.++..+++..+.-+
T Consensus 323 d~~~R~~Il~~~~~~ 337 (644)
T PRK10733 323 DVRGREQILKVHMRR 337 (644)
T ss_pred CHHHHHHHHHHHhhc
Confidence 988899998877643
No 248
>PRK08939 primosomal protein DnaI; Reviewed
Probab=95.94 E-value=0.014 Score=64.24 Aligned_cols=36 Identities=19% Similarity=0.265 Sum_probs=28.9
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhcccccceEEEe
Q 001458 19 VRMIGICGMGGLGKTTIARVVYDLISHEFEASGFLD 54 (1074)
Q Consensus 19 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 54 (1074)
.+-+.++|..|+|||.||.++++....+-..+.|+.
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~ 191 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLH 191 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 456899999999999999999998765544455654
No 249
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=95.92 E-value=0.079 Score=66.64 Aligned_cols=29 Identities=21% Similarity=0.511 Sum_probs=25.1
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhcccc
Q 001458 19 VRMIGICGMGGLGKTTIARVVYDLISHEF 47 (1074)
Q Consensus 19 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F 47 (1074)
.+++.++|++|+|||++|+.+++.....|
T Consensus 347 ~~~lll~GppG~GKT~lAk~iA~~l~~~~ 375 (775)
T TIGR00763 347 GPILCLVGPPGVGKTSLGKSIAKALNRKF 375 (775)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhcCCe
Confidence 45789999999999999999999876554
No 250
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.90 E-value=0.021 Score=55.40 Aligned_cols=24 Identities=33% Similarity=0.618 Sum_probs=21.3
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhc
Q 001458 21 MIGICGMGGLGKTTIARVVYDLIS 44 (1074)
Q Consensus 21 vv~I~G~gGiGKTtLA~~v~~~~~ 44 (1074)
+|.+.|++|.||||+|+.+.....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC
Confidence 588999999999999999987554
No 251
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=95.84 E-value=0.032 Score=57.59 Aligned_cols=109 Identities=15% Similarity=0.234 Sum_probs=62.7
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhcccccceEE-EeechhhhccCChHHHHHHHHHHHhcccCCccccccchHHHHHhhhC
Q 001458 21 MIGICGMGGLGKTTIARVVYDLISHEFEASGF-LDNVREISSKGGLVSLQRQLLSQLLKLADNSIWNVFDGIDMLGSRLQ 99 (1074)
Q Consensus 21 vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~-~~~~~~~s~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~ 99 (1074)
+|.|.|+.|.||||+++++...+.......++ +.+-.+.... .. ..+..+ ... ..+.....+.++..|+
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~-~~----~~~i~q----~~v-g~~~~~~~~~i~~aLr 72 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHE-SK----RSLINQ----REV-GLDTLSFENALKAALR 72 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCcccccc-Cc----cceeee----ccc-CCCccCHHHHHHHHhc
Confidence 68999999999999999988877654444433 3221111100 00 001100 000 1112234556777777
Q ss_pred CCeEEEEEcCCCChHHHHHHhcCCCCCCCCCEEEEEeCChhhh
Q 001458 100 RKKVLLVIDDVVDVKQLQSLAGNREWFGSGSRIIITSRDEHLL 142 (1074)
Q Consensus 100 ~kr~LlVLDdv~~~~~l~~l~~~~~~~~~gs~IiiTTR~~~v~ 142 (1074)
...=.+++|++.+.+.+....... ..|..|+.|+-...+.
T Consensus 73 ~~pd~ii~gEird~e~~~~~l~~a---~~G~~v~~t~Ha~~~~ 112 (198)
T cd01131 73 QDPDVILVGEMRDLETIRLALTAA---ETGHLVMSTLHTNSAA 112 (198)
T ss_pred CCcCEEEEcCCCCHHHHHHHHHHH---HcCCEEEEEecCCcHH
Confidence 777899999998877665544321 2466677777655443
No 252
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.82 E-value=0.061 Score=60.92 Aligned_cols=27 Identities=26% Similarity=0.357 Sum_probs=23.7
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHHHhc
Q 001458 18 DVRMIGICGMGGLGKTTIARVVYDLIS 44 (1074)
Q Consensus 18 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 44 (1074)
..++|.++|+.|+||||.+..++..+.
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~ 199 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYG 199 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 367999999999999999999987654
No 253
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=95.79 E-value=0.042 Score=56.50 Aligned_cols=116 Identities=21% Similarity=0.212 Sum_probs=58.0
Q ss_pred HHHHHHHhhcCCCCCeEEEEEEccCCCcHHHHHHHHHHHhcccccceEEEeechhhhccCChHHHHHHHHHHHhcccCCc
Q 001458 4 RCEKLRFLMDSGSSDVRMIGICGMGGLGKTTIARVVYDLISHEFEASGFLDNVREISSKGGLVSLQRQLLSQLLKLADNS 83 (1074)
Q Consensus 4 ~~~~l~~lL~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~ll~~l~~~~~~~ 83 (1074)
..+-+...+.. +-+++.|.|.+|.||||+++.+...+...=..++++. ... .....+-.... ..
T Consensus 6 Q~~a~~~~l~~---~~~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~a-----pT~----~Aa~~L~~~~~----~~ 69 (196)
T PF13604_consen 6 QREAVRAILTS---GDRVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLA-----PTN----KAAKELREKTG----IE 69 (196)
T ss_dssp HHHHHHHHHHC---TCSEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEE-----SSH----HHHHHHHHHHT----S-
T ss_pred HHHHHHHHHhc---CCeEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEEC-----CcH----HHHHHHHHhhC----cc
Confidence 44555566653 2367889999999999999999886655433334433 111 11222222211 00
Q ss_pred cccccchHHHHHhhh---------CCCeEEEEEcCCCCh--HHHHHHhcCCCCCCCCCEEEEEeCChh
Q 001458 84 IWNVFDGIDMLGSRL---------QRKKVLLVIDDVVDV--KQLQSLAGNREWFGSGSRIIITSRDEH 140 (1074)
Q Consensus 84 ~~~~~~~~~~i~~~L---------~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~gs~IiiTTR~~~ 140 (1074)
. ......+...- ..++-+||+|++.-. .++..+..... ..|++||+.-=..+
T Consensus 70 a---~Ti~~~l~~~~~~~~~~~~~~~~~~vliVDEasmv~~~~~~~ll~~~~--~~~~klilvGD~~Q 132 (196)
T PF13604_consen 70 A---QTIHSFLYRIPNGDDEGRPELPKKDVLIVDEASMVDSRQLARLLRLAK--KSGAKLILVGDPNQ 132 (196)
T ss_dssp E---EEHHHHTTEECCEECCSSCC-TSTSEEEESSGGG-BHHHHHHHHHHS---T-T-EEEEEE-TTS
T ss_pred h---hhHHHHHhcCCcccccccccCCcccEEEEecccccCHHHHHHHHHHHH--hcCCEEEEECCcch
Confidence 0 00001111000 233459999998654 45666655433 25788888765544
No 254
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=95.79 E-value=0.033 Score=59.33 Aligned_cols=50 Identities=12% Similarity=0.116 Sum_probs=38.4
Q ss_pred HHHHHHhhcCCCCCeEEEEEEccCCCcHHHHHHHHHHHhcccccceEEEe
Q 001458 5 CEKLRFLMDSGSSDVRMIGICGMGGLGKTTIARVVYDLISHEFEASGFLD 54 (1074)
Q Consensus 5 ~~~l~~lL~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 54 (1074)
++.|.++|..+=..-.++.|.|.+|.|||++|.++......+-+.++|+.
T Consensus 7 i~~LD~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs 56 (237)
T TIGR03877 7 IPGMDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVA 56 (237)
T ss_pred cHhHHHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEE
Confidence 56677888755556689999999999999999987764434556777775
No 255
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=95.78 E-value=0.071 Score=52.94 Aligned_cols=40 Identities=28% Similarity=0.280 Sum_probs=29.2
Q ss_pred hHHHHHHHhhcCCCCCeEEEEEEccCCCcHHHHHHHHHHHh
Q 001458 3 SRCEKLRFLMDSGSSDVRMIGICGMGGLGKTTIARVVYDLI 43 (1074)
Q Consensus 3 ~~~~~l~~lL~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 43 (1074)
.-++.|..++..+ .-.+.+.++|+.|+||+|+|+++++.+
T Consensus 4 ~~~~~L~~~~~~~-~l~ha~L~~G~~g~gk~~~a~~~a~~l 43 (162)
T PF13177_consen 4 EIIELLKNLIKSG-RLPHALLFHGPSGSGKKTLALAFARAL 43 (162)
T ss_dssp HHHHHHHHHHHCT-C--SEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC-CcceeEEEECCCCCCHHHHHHHHHHHH
Confidence 3456666666532 225678999999999999999999854
No 256
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=95.78 E-value=0.028 Score=59.87 Aligned_cols=50 Identities=18% Similarity=0.097 Sum_probs=36.6
Q ss_pred HHHHHHhhcCCCCCeEEEEEEccCCCcHHHHHHHHHHHhcccccceEEEe
Q 001458 5 CEKLRFLMDSGSSDVRMIGICGMGGLGKTTIARVVYDLISHEFEASGFLD 54 (1074)
Q Consensus 5 ~~~l~~lL~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 54 (1074)
+..|..+|..+-..-.++.|+|.+|.||||+|.++......+=..++|+.
T Consensus 11 i~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~ 60 (234)
T PRK06067 11 NEELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVIT 60 (234)
T ss_pred CHHHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEE
Confidence 35567777655455678999999999999999999654333445666765
No 257
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=95.78 E-value=0.022 Score=62.60 Aligned_cols=49 Identities=27% Similarity=0.273 Sum_probs=36.7
Q ss_pred HHHHHhhc-CCCCCeEEEEEEccCCCcHHHHHHHHHHHhcccccceEEEe
Q 001458 6 EKLRFLMD-SGSSDVRMIGICGMGGLGKTTIARVVYDLISHEFEASGFLD 54 (1074)
Q Consensus 6 ~~l~~lL~-~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 54 (1074)
..|..+|. .+-..-+++-|+|++|+||||||..++......-..++|++
T Consensus 41 ~~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId 90 (325)
T cd00983 41 LSLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFID 90 (325)
T ss_pred HHHHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEC
Confidence 35666665 33344678999999999999999998876655556677776
No 258
>PRK08233 hypothetical protein; Provisional
Probab=95.77 E-value=0.027 Score=57.32 Aligned_cols=26 Identities=27% Similarity=0.450 Sum_probs=23.3
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhc
Q 001458 19 VRMIGICGMGGLGKTTIARVVYDLIS 44 (1074)
Q Consensus 19 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 44 (1074)
..+|+|.|.+|.||||+|+.++..+.
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 47899999999999999999998664
No 259
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=95.76 E-value=0.0068 Score=56.08 Aligned_cols=30 Identities=27% Similarity=0.443 Sum_probs=21.8
Q ss_pred EEEEccCCCcHHHHHHHHHHHhcccccceE
Q 001458 22 IGICGMGGLGKTTIARVVYDLISHEFEASG 51 (1074)
Q Consensus 22 v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~ 51 (1074)
|-|+|.+|+||||+|++++..+...|..+-
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~~f~RIq 31 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGLSFKRIQ 31 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT--EEEEE
T ss_pred EeeECCCccHHHHHHHHHHHHcCCceeEEE
Confidence 679999999999999999999988886543
No 260
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=95.75 E-value=0.016 Score=59.12 Aligned_cols=31 Identities=39% Similarity=0.548 Sum_probs=27.6
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHHHHhcccc
Q 001458 17 SDVRMIGICGMGGLGKTTIARVVYDLISHEF 47 (1074)
Q Consensus 17 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F 47 (1074)
..+.+|||.|.+|.||||+|+++++.+....
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~~~ 36 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLGVEK 36 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhCcCc
Confidence 4578999999999999999999999887663
No 261
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=95.74 E-value=0.024 Score=59.79 Aligned_cols=121 Identities=17% Similarity=0.210 Sum_probs=69.2
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhcccccceEEEeechhhhccCChHHHHHHHHHHHhcccCCccccccchHHHHHhhh
Q 001458 19 VRMIGICGMGGLGKTTIARVVYDLISHEFEASGFLDNVREISSKGGLVSLQRQLLSQLLKLADNSIWNVFDGIDMLGSRL 98 (1074)
Q Consensus 19 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L 98 (1074)
...++|||++|.|||-+|++|+..+.-.|-... .+ ++.++ ...+....|+++.
T Consensus 166 Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~-------ss----------~lv~k----------yiGEsaRlIRemf 218 (388)
T KOG0651|consen 166 PKGLLLYGPPGTGKTLLARAVAATMGVNFLKVV-------SS----------ALVDK----------YIGESARLIRDMF 218 (388)
T ss_pred CceeEEeCCCCCchhHHHHHHHHhcCCceEEee-------Hh----------hhhhh----------hcccHHHHHHHHH
Confidence 568999999999999999999998866653211 01 11111 1112233444433
Q ss_pred C----CCeEEEEEcCCCChH----------------HHHHHhcCCCCC--CCCCEEEEEeCChhhhhhc-----CCCcee
Q 001458 99 Q----RKKVLLVIDDVVDVK----------------QLQSLAGNREWF--GSGSRIIITSRDEHLLKTH-----GVDEVY 151 (1074)
Q Consensus 99 ~----~kr~LlVLDdv~~~~----------------~l~~l~~~~~~~--~~gs~IiiTTR~~~v~~~~-----~~~~~~ 151 (1074)
+ ..++.|.+||+|-.. .+-+|+...+-+ -...++|+||.+.+.+... ..+..|
T Consensus 219 ~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~ImatNrpdtLdpaLlRpGRldrk~ 298 (388)
T KOG0651|consen 219 RYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKTIMATNRPDTLDPALLRPGRLDRKV 298 (388)
T ss_pred HHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhcccccEEEecCCccccchhhcCCcccccee
Confidence 2 245888999986421 144444433322 2456899999886654321 235567
Q ss_pred cCCCCChHHHHHHHH
Q 001458 152 KPHGLNYDEALQLFN 166 (1074)
Q Consensus 152 ~l~~L~~~ea~~Lf~ 166 (1074)
+.+-.++..-...++
T Consensus 299 ~iPlpne~~r~~I~K 313 (388)
T KOG0651|consen 299 EIPLPNEQARLGILK 313 (388)
T ss_pred ccCCcchhhceeeEe
Confidence 777444444444333
No 262
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.69 E-value=0.0086 Score=56.90 Aligned_cols=22 Identities=50% Similarity=0.782 Sum_probs=20.5
Q ss_pred EEEEccCCCcHHHHHHHHHHHh
Q 001458 22 IGICGMGGLGKTTIARVVYDLI 43 (1074)
Q Consensus 22 v~I~G~gGiGKTtLA~~v~~~~ 43 (1074)
|+|.|+.|+||||+|+++.++.
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999875
No 263
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=95.67 E-value=0.028 Score=60.21 Aligned_cols=36 Identities=19% Similarity=0.178 Sum_probs=28.3
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhcccccceEEEe
Q 001458 19 VRMIGICGMGGLGKTTIARVVYDLISHEFEASGFLD 54 (1074)
Q Consensus 19 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 54 (1074)
..-+.++|.+|+|||.||.++.+++...--.+.|+.
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~ 140 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFIT 140 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEE
Confidence 345899999999999999999998874434455554
No 264
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.66 E-value=0.032 Score=65.45 Aligned_cols=75 Identities=24% Similarity=0.373 Sum_probs=48.9
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHHHHhcccccceEEEeechhhhccCChHHHHHHHHHHHhcccCCccccccchHHHHHh
Q 001458 17 SDVRMIGICGMGGLGKTTIARVVYDLISHEFEASGFLDNVREISSKGGLVSLQRQLLSQLLKLADNSIWNVFDGIDMLGS 96 (1074)
Q Consensus 17 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~ 96 (1074)
..-+|.-++|++|+||||||..+++.-. |. ++=+. .|.......+-+.|...+... .
T Consensus 324 P~kKilLL~GppGlGKTTLAHViAkqaG--Ys-VvEIN----ASDeRt~~~v~~kI~~avq~~----------------s 380 (877)
T KOG1969|consen 324 PPKKILLLCGPPGLGKTTLAHVIAKQAG--YS-VVEIN----ASDERTAPMVKEKIENAVQNH----------------S 380 (877)
T ss_pred CccceEEeecCCCCChhHHHHHHHHhcC--ce-EEEec----ccccccHHHHHHHHHHHHhhc----------------c
Confidence 4568999999999999999999998543 21 11122 344555555555555554321 1
Q ss_pred hh--CCCeEEEEEcCCCChH
Q 001458 97 RL--QRKKVLLVIDDVVDVK 114 (1074)
Q Consensus 97 ~L--~~kr~LlVLDdv~~~~ 114 (1074)
.| .+++.-||+|.+|...
T Consensus 381 ~l~adsrP~CLViDEIDGa~ 400 (877)
T KOG1969|consen 381 VLDADSRPVCLVIDEIDGAP 400 (877)
T ss_pred ccccCCCcceEEEecccCCc
Confidence 22 2578889999998643
No 265
>PRK09354 recA recombinase A; Provisional
Probab=95.66 E-value=0.024 Score=62.71 Aligned_cols=49 Identities=24% Similarity=0.290 Sum_probs=37.6
Q ss_pred HHHHHhhc-CCCCCeEEEEEEccCCCcHHHHHHHHHHHhcccccceEEEe
Q 001458 6 EKLRFLMD-SGSSDVRMIGICGMGGLGKTTIARVVYDLISHEFEASGFLD 54 (1074)
Q Consensus 6 ~~l~~lL~-~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 54 (1074)
..|..+|. .+-..-+++-|+|++|.||||||..++......-..++|++
T Consensus 46 ~~LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId 95 (349)
T PRK09354 46 LALDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFID 95 (349)
T ss_pred HHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEC
Confidence 45666776 34345679999999999999999998876655556778876
No 266
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=95.57 E-value=0.068 Score=66.58 Aligned_cols=30 Identities=17% Similarity=0.422 Sum_probs=25.4
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHHHhcccc
Q 001458 18 DVRMIGICGMGGLGKTTIARVVYDLISHEF 47 (1074)
Q Consensus 18 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F 47 (1074)
...++.++|++|+||||+|+.++......|
T Consensus 348 ~g~~i~l~GppG~GKTtl~~~ia~~l~~~~ 377 (784)
T PRK10787 348 KGPILCLVGPPGVGKTSLGQSIAKATGRKY 377 (784)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 346799999999999999999998766554
No 267
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.57 E-value=0.12 Score=59.69 Aligned_cols=46 Identities=24% Similarity=0.275 Sum_probs=32.4
Q ss_pred ChhHHHHHHHhhcC----------CCCCeEEEEEEccCCCcHHHHHHHHHHHhccc
Q 001458 1 MDSRCEKLRFLMDS----------GSSDVRMIGICGMGGLGKTTIARVVYDLISHE 46 (1074)
Q Consensus 1 ~~~~~~~l~~lL~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 46 (1074)
||..+.+|.+++.. +-.-.|=|.++|++|.|||.||++++....--
T Consensus 195 ~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vP 250 (802)
T KOG0733|consen 195 LDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVP 250 (802)
T ss_pred hHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCc
Confidence 34556666665542 11224668999999999999999999876543
No 268
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.52 E-value=0.14 Score=57.44 Aligned_cols=153 Identities=17% Similarity=0.157 Sum_probs=80.4
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhcccccceEEEeechhhhccCChHHHHHHHHHHHhcccCCccccccchHHHHHhhh
Q 001458 19 VRMIGICGMGGLGKTTIARVVYDLISHEFEASGFLDNVREISSKGGLVSLQRQLLSQLLKLADNSIWNVFDGIDMLGSRL 98 (1074)
Q Consensus 19 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L 98 (1074)
-|=-.++|++|.|||++..++++.. +.-++.-+..++. +-.+ ++.++..
T Consensus 235 KRGYLLYGPPGTGKSS~IaAmAn~L----~ydIydLeLt~v~---~n~d-Lr~LL~~----------------------- 283 (457)
T KOG0743|consen 235 KRGYLLYGPPGTGKSSFIAAMANYL----NYDIYDLELTEVK---LDSD-LRHLLLA----------------------- 283 (457)
T ss_pred hccceeeCCCCCCHHHHHHHHHhhc----CCceEEeeecccc---CcHH-HHHHHHh-----------------------
Confidence 3445789999999999999999854 2334433222221 1112 3333333
Q ss_pred CCCeEEEEEcCCCChHH--------------------HHHHhcCCC--CCCC-CCEEE-EEeCChhhh-----hhcCCCc
Q 001458 99 QRKKVLLVIDDVVDVKQ--------------------LQSLAGNRE--WFGS-GSRII-ITSRDEHLL-----KTHGVDE 149 (1074)
Q Consensus 99 ~~kr~LlVLDdv~~~~~--------------------l~~l~~~~~--~~~~-gs~Ii-iTTR~~~v~-----~~~~~~~ 149 (1074)
...|-+||+.|+|-.-+ +..|+...+ |... +-||| .||...+-+ ..-..+.
T Consensus 284 t~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDm 363 (457)
T KOG0743|consen 284 TPNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDM 363 (457)
T ss_pred CCCCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCccee
Confidence 12445666666653211 222332222 3333 34655 566654322 2112344
Q ss_pred eecCCCCChHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCCchHHHHHHh-hcCCC
Q 001458 150 VYKPHGLNYDEALQLFNMKAFKTYQPLQECVQLSARIIRYAGGLPLALEVLGS-FLSGR 207 (1074)
Q Consensus 150 ~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~g~-~L~~~ 207 (1074)
.+.+.-=+.+.-..||+++..... + ..++.+|.+...|.-+.=..++. ++..+
T Consensus 364 hI~mgyCtf~~fK~La~nYL~~~~-~----h~L~~eie~l~~~~~~tPA~V~e~lm~~~ 417 (457)
T KOG0743|consen 364 HIYMGYCTFEAFKTLASNYLGIEE-D----HRLFDEIERLIEETEVTPAQVAEELMKNK 417 (457)
T ss_pred EEEcCCCCHHHHHHHHHHhcCCCC-C----cchhHHHHHHhhcCccCHHHHHHHHhhcc
Confidence 667777788888888887763322 2 23455566666666555444444 44444
No 269
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.51 E-value=0.08 Score=61.03 Aligned_cols=29 Identities=28% Similarity=0.373 Sum_probs=25.3
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHHHhccc
Q 001458 18 DVRMIGICGMGGLGKTTIARVVYDLISHE 46 (1074)
Q Consensus 18 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 46 (1074)
...+|.++|.+|+||||+|..++..+..+
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~ 122 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKK 122 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHc
Confidence 46899999999999999999999876654
No 270
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=95.50 E-value=0.062 Score=58.02 Aligned_cols=101 Identities=16% Similarity=0.137 Sum_probs=60.7
Q ss_pred HHHHHHHhhcCCCCCeEEEEEEccCCCcHHHHHHHHHHHhcccccceEEEeechhhhccCChHHHHHHHHHHHhcccCCc
Q 001458 4 RCEKLRFLMDSGSSDVRMIGICGMGGLGKTTIARVVYDLISHEFEASGFLDNVREISSKGGLVSLQRQLLSQLLKLADNS 83 (1074)
Q Consensus 4 ~~~~l~~lL~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~ll~~l~~~~~~~ 83 (1074)
.++.++.++... -.+|.|.|..|.||||+++++.+.+...-..++.+.+..|... .+.. ++ . ..
T Consensus 68 ~~~~l~~~~~~~---~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~-~~~~--------q~-~---v~ 131 (264)
T cd01129 68 NLEIFRKLLEKP---HGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQI-PGIN--------QV-Q---VN 131 (264)
T ss_pred HHHHHHHHHhcC---CCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecC-CCce--------EE-E---eC
Confidence 445555665422 2479999999999999999998876542233445554333221 1110 00 0 00
Q ss_pred cccccchHHHHHhhhCCCeEEEEEcCCCChHHHHHHh
Q 001458 84 IWNVFDGIDMLGSRLQRKKVLLVIDDVVDVKQLQSLA 120 (1074)
Q Consensus 84 ~~~~~~~~~~i~~~L~~kr~LlVLDdv~~~~~l~~l~ 120 (1074)
...-....+.++..|+...=.|+++++.+.+....+.
T Consensus 132 ~~~~~~~~~~l~~~lR~~PD~i~vgEiR~~e~a~~~~ 168 (264)
T cd01129 132 EKAGLTFARGLRAILRQDPDIIMVGEIRDAETAEIAV 168 (264)
T ss_pred CcCCcCHHHHHHHHhccCCCEEEeccCCCHHHHHHHH
Confidence 0011134567788888888899999999887655443
No 271
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=95.49 E-value=0.073 Score=54.20 Aligned_cols=23 Identities=22% Similarity=0.252 Sum_probs=21.2
Q ss_pred EEEEEccCCCcHHHHHHHHHHHh
Q 001458 21 MIGICGMGGLGKTTIARVVYDLI 43 (1074)
Q Consensus 21 vv~I~G~gGiGKTtLA~~v~~~~ 43 (1074)
+|.|.|++|+||||+|+.+++++
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999876
No 272
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=95.48 E-value=0.033 Score=61.12 Aligned_cols=49 Identities=27% Similarity=0.306 Sum_probs=36.5
Q ss_pred HHHHHhhc-CCCCCeEEEEEEccCCCcHHHHHHHHHHHhcccccceEEEe
Q 001458 6 EKLRFLMD-SGSSDVRMIGICGMGGLGKTTIARVVYDLISHEFEASGFLD 54 (1074)
Q Consensus 6 ~~l~~lL~-~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 54 (1074)
..|..+|. .+-..-+++-|+|++|+||||||..++......-..++|++
T Consensus 41 ~~LD~~Lg~GGlp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId 90 (321)
T TIGR02012 41 LSLDLALGVGGLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFID 90 (321)
T ss_pred HHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEc
Confidence 45666665 34345689999999999999999998876655555667775
No 273
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=95.47 E-value=0.053 Score=58.40 Aligned_cols=118 Identities=14% Similarity=0.110 Sum_probs=64.3
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHHHHhcccccceEEEeechhhhccCChHHHHHHHHHHHhcccCCc-------cccccc
Q 001458 17 SDVRMIGICGMGGLGKTTIARVVYDLISHEFEASGFLDNVREISSKGGLVSLQRQLLSQLLKLADNS-------IWNVFD 89 (1074)
Q Consensus 17 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~ll~~l~~~~~~~-------~~~~~~ 89 (1074)
.+.+-++|+|..|.|||||++.++..+... .+.+++...+ +... +-..++........... ..+...
T Consensus 109 ~~~~~~~i~g~~g~GKttl~~~l~~~~~~~-~G~i~~~g~~-v~~~----d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k 182 (270)
T TIGR02858 109 NRVLNTLIISPPQCGKTTLLRDLARILSTG-ISQLGLRGKK-VGIV----DERSEIAGCVNGVPQHDVGIRTDVLDGCPK 182 (270)
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHhCccCCC-CceEEECCEE-eecc----hhHHHHHHHhcccccccccccccccccchH
Confidence 345789999999999999999999866543 2333332110 1000 00112221111000000 011111
Q ss_pred hHHHHHhhhCCCeEEEEEcCCCChHHHHHHhcCCCCCCCCCEEEEEeCChhhhh
Q 001458 90 GIDMLGSRLQRKKVLLVIDDVVDVKQLQSLAGNREWFGSGSRIIITSRDEHLLK 143 (1074)
Q Consensus 90 ~~~~i~~~L~~kr~LlVLDdv~~~~~l~~l~~~~~~~~~gs~IiiTTR~~~v~~ 143 (1074)
...+..-.....+=++|+|.+...+.+..+..... .|..||+||-+..+..
T Consensus 183 ~~~~~~~i~~~~P~villDE~~~~e~~~~l~~~~~---~G~~vI~ttH~~~~~~ 233 (270)
T TIGR02858 183 AEGMMMLIRSMSPDVIVVDEIGREEDVEALLEALH---AGVSIIATAHGRDVED 233 (270)
T ss_pred HHHHHHHHHhCCCCEEEEeCCCcHHHHHHHHHHHh---CCCEEEEEechhHHHH
Confidence 11111122224778999999988887777765542 5788999998766533
No 274
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.46 E-value=0.013 Score=60.45 Aligned_cols=26 Identities=38% Similarity=0.710 Sum_probs=23.3
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhccc
Q 001458 21 MIGICGMGGLGKTTIARVVYDLISHE 46 (1074)
Q Consensus 21 vv~I~G~gGiGKTtLA~~v~~~~~~~ 46 (1074)
||||.|.+|.||||+|+++...+...
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~ 26 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKR 26 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTC
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCcc
Confidence 69999999999999999999977643
No 275
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=95.45 E-value=0.018 Score=55.91 Aligned_cols=35 Identities=31% Similarity=0.320 Sum_probs=29.8
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHhcccccceEEEe
Q 001458 20 RMIGICGMGGLGKTTIARVVYDLISHEFEASGFLD 54 (1074)
Q Consensus 20 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 54 (1074)
.+|-|.|.+|.||||||+++.+++...-..+.+++
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LD 37 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERRLFARGIKVYLLD 37 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEec
Confidence 58999999999999999999999887766666665
No 276
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.45 E-value=0.038 Score=53.68 Aligned_cols=34 Identities=24% Similarity=0.339 Sum_probs=25.5
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHhcccccceEEEe
Q 001458 20 RMIGICGMGGLGKTTIARVVYDLISHEFEASGFLD 54 (1074)
Q Consensus 20 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 54 (1074)
.+++|.|..|.|||||++.+..... ...+.+++.
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~~-~~~G~i~~~ 60 (144)
T cd03221 27 DRIGLVGRNGAGKSTLLKLIAGELE-PDEGIVTWG 60 (144)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCCC-CCceEEEEC
Confidence 5799999999999999999986432 224445543
No 277
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.44 E-value=0.052 Score=59.33 Aligned_cols=28 Identities=25% Similarity=0.274 Sum_probs=24.1
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHHHhcc
Q 001458 18 DVRMIGICGMGGLGKTTIARVVYDLISH 45 (1074)
Q Consensus 18 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 45 (1074)
..++|+|+|++|+||||++..++.....
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~ 220 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVL 220 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3579999999999999999999886643
No 278
>PRK08356 hypothetical protein; Provisional
Probab=95.41 E-value=0.084 Score=54.37 Aligned_cols=21 Identities=33% Similarity=0.542 Sum_probs=19.4
Q ss_pred EEEEEEccCCCcHHHHHHHHH
Q 001458 20 RMIGICGMGGLGKTTIARVVY 40 (1074)
Q Consensus 20 ~vv~I~G~gGiGKTtLA~~v~ 40 (1074)
.+|+|.|++|.||||+|+.+.
T Consensus 6 ~~i~~~G~~gsGK~t~a~~l~ 26 (195)
T PRK08356 6 MIVGVVGKIAAGKTTVAKFFE 26 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 578999999999999999994
No 279
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=95.40 E-value=0.094 Score=61.87 Aligned_cols=49 Identities=31% Similarity=0.544 Sum_probs=37.9
Q ss_pred hHHHHHHHhhcC---CCCCeEEEEEEccCCCcHHHHHHHHHHHhcccccceEEE
Q 001458 3 SRCEKLRFLMDS---GSSDVRMIGICGMGGLGKTTIARVVYDLISHEFEASGFL 53 (1074)
Q Consensus 3 ~~~~~l~~lL~~---~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 53 (1074)
..+++++.||.. +....+++.+.|++|.||||.++.+++... |+..-|.
T Consensus 26 kKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg--~~v~Ew~ 77 (519)
T PF03215_consen 26 KKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELG--FEVQEWI 77 (519)
T ss_pred HHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhC--CeeEEec
Confidence 468899999974 233467999999999999999999998753 4444454
No 280
>PRK10865 protein disaggregation chaperone; Provisional
Probab=95.40 E-value=0.09 Score=66.54 Aligned_cols=25 Identities=20% Similarity=0.361 Sum_probs=22.2
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHhc
Q 001458 20 RMIGICGMGGLGKTTIARVVYDLIS 44 (1074)
Q Consensus 20 ~vv~I~G~gGiGKTtLA~~v~~~~~ 44 (1074)
.++.++|+.|+|||++|+++++...
T Consensus 599 ~~~Lf~Gp~G~GKT~lA~aLa~~l~ 623 (857)
T PRK10865 599 GSFLFLGPTGVGKTELCKALANFMF 623 (857)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhh
Confidence 4788999999999999999998654
No 281
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=95.36 E-value=0.11 Score=60.86 Aligned_cols=34 Identities=29% Similarity=0.523 Sum_probs=28.7
Q ss_pred CCCCeEEEEEEccCCCcHHHHHHHHHHHhccccc
Q 001458 15 GSSDVRMIGICGMGGLGKTTIARVVYDLISHEFE 48 (1074)
Q Consensus 15 ~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~ 48 (1074)
++.+-++++.+|++|||||.+|+.++......|-
T Consensus 434 gs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFf 467 (906)
T KOG2004|consen 434 GSVQGKILCFVGPPGVGKTSIAKSIARALNRKFF 467 (906)
T ss_pred ccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceE
Confidence 3445689999999999999999999998776664
No 282
>PRK14974 cell division protein FtsY; Provisional
Probab=95.32 E-value=0.16 Score=56.56 Aligned_cols=29 Identities=24% Similarity=0.303 Sum_probs=24.7
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHHHhccc
Q 001458 18 DVRMIGICGMGGLGKTTIARVVYDLISHE 46 (1074)
Q Consensus 18 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 46 (1074)
..++|+++|+.|+||||++..++..+..+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~ 167 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKN 167 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 36899999999999999999998766543
No 283
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.29 E-value=0.029 Score=55.65 Aligned_cols=31 Identities=29% Similarity=0.343 Sum_probs=24.9
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHhcccccce
Q 001458 20 RMIGICGMGGLGKTTIARVVYDLISHEFEAS 50 (1074)
Q Consensus 20 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~ 50 (1074)
+.|.+.|.+|+||||+|++++...++.-..+
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~i~~v 32 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQEIWRV 32 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHhhhhc
Confidence 4678999999999999999998666554333
No 284
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=95.27 E-value=0.073 Score=64.51 Aligned_cols=94 Identities=17% Similarity=0.222 Sum_probs=55.4
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhcccccceEEEeechhhhccCChHHHHHHHHHHHhcccCCccccccchHHHHHhhh
Q 001458 19 VRMIGICGMGGLGKTTIARVVYDLISHEFEASGFLDNVREISSKGGLVSLQRQLLSQLLKLADNSIWNVFDGIDMLGSRL 98 (1074)
Q Consensus 19 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L 98 (1074)
+......|+.|||||-||++++..+-+.=+..+-++ ..|.. -+.-.+.+.+....-.. .++ --.+-+..
T Consensus 521 igsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~D-MSEy~--------EkHsVSrLIGaPPGYVG-yee-GG~LTEaV 589 (786)
T COG0542 521 IGSFLFLGPTGVGKTELAKALAEALFGDEQALIRID-MSEYM--------EKHSVSRLIGAPPGYVG-YEE-GGQLTEAV 589 (786)
T ss_pred ceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeec-hHHHH--------HHHHHHHHhCCCCCCce-ecc-ccchhHhh
Confidence 567788999999999999999986643223334343 22222 23334555544333222 222 23456666
Q ss_pred CCCeE-EEEEcCCCChH--HHHHHhcCC
Q 001458 99 QRKKV-LLVIDDVVDVK--QLQSLAGNR 123 (1074)
Q Consensus 99 ~~kr~-LlVLDdv~~~~--~l~~l~~~~ 123 (1074)
++++| +|.||+|+... -++-+...+
T Consensus 590 Rr~PySViLlDEIEKAHpdV~nilLQVl 617 (786)
T COG0542 590 RRKPYSVILLDEIEKAHPDVFNLLLQVL 617 (786)
T ss_pred hcCCCeEEEechhhhcCHHHHHHHHHHh
Confidence 77877 77899997643 344444443
No 285
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.24 E-value=0.42 Score=57.79 Aligned_cols=165 Identities=15% Similarity=0.220 Sum_probs=95.5
Q ss_pred hHHHHHHHhhcCC-------CCCeEEEEEEccCCCcHHHHHHHHHHHhcccccceEEEeechhhhccCChHHHHHHHHHH
Q 001458 3 SRCEKLRFLMDSG-------SSDVRMIGICGMGGLGKTTIARVVYDLISHEFEASGFLDNVREISSKGGLVSLQRQLLSQ 75 (1074)
Q Consensus 3 ~~~~~l~~lL~~~-------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~ll~~ 75 (1074)
.+++++...|... ..=+|=|-++|++|.|||-||++++-.-. +=|+. ++.. +.++.
T Consensus 321 ~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAg-----VPF~s----vSGS--------EFvE~ 383 (774)
T KOG0731|consen 321 EELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAG-----VPFFS----VSGS--------EFVEM 383 (774)
T ss_pred HHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccC-----Cceee----echH--------HHHHH
Confidence 4566666666532 22256689999999999999999986432 22332 1110 11111
Q ss_pred HhcccCCccccccchHHHHHhhh----CCCeEEEEEcCCCCh-----------------HHHHHHhcCCCCCCCCCEEEE
Q 001458 76 LLKLADNSIWNVFDGIDMLGSRL----QRKKVLLVIDDVVDV-----------------KQLQSLAGNREWFGSGSRIII 134 (1074)
Q Consensus 76 l~~~~~~~~~~~~~~~~~i~~~L----~~kr~LlVLDdv~~~-----------------~~l~~l~~~~~~~~~gs~Iii 134 (1074)
... .+..++++.. ...+..|.+|++|.. ..+..+....+-|..+..|||
T Consensus 384 ~~g----------~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~ 453 (774)
T KOG0731|consen 384 FVG----------VGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIV 453 (774)
T ss_pred hcc----------cchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEE
Confidence 100 0112222222 235577888877532 126677766665555553443
Q ss_pred --EeCChhhhhh-----cCCCceecCCCCChHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCCchH
Q 001458 135 --TSRDEHLLKT-----HGVDEVYKPHGLNYDEALQLFNMKAFKTYQPLQECVQLSARIIRYAGGLPLA 196 (1074)
Q Consensus 135 --TTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLa 196 (1074)
+|+..+++.. -..+..+.+..-+.....++|..|+-+.... .+..++++ ++....|.+=|
T Consensus 454 ~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~-~e~~dl~~-~a~~t~gf~ga 520 (774)
T KOG0731|consen 454 LAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLD-DEDVDLSK-LASLTPGFSGA 520 (774)
T ss_pred EeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCC-cchhhHHH-HHhcCCCCcHH
Confidence 3443333322 1335678888889999999999998554433 34556666 88888888855
No 286
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=95.23 E-value=0.18 Score=52.02 Aligned_cols=127 Identities=19% Similarity=0.229 Sum_probs=74.4
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHHHhcccccceEEEeechhhhccCChHHHHHHHHHHHhcccCCccccccchHHHHHhh
Q 001458 18 DVRMIGICGMGGLGKTTIARVVYDLISHEFEASGFLDNVREISSKGGLVSLQRQLLSQLLKLADNSIWNVFDGIDMLGSR 97 (1074)
Q Consensus 18 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~ 97 (1074)
..+-|..+|++|.|||-+|+++++...--| +. +- ..+++.. .+.++..+|++.
T Consensus 150 APknVLFyGppGTGKTm~Akalane~kvp~-----l~----vk--------at~liGe----------hVGdgar~Ihel 202 (368)
T COG1223 150 APKNVLFYGPPGTGKTMMAKALANEAKVPL-----LL----VK--------ATELIGE----------HVGDGARRIHEL 202 (368)
T ss_pred CcceeEEECCCCccHHHHHHHHhcccCCce-----EE----ec--------hHHHHHH----------HhhhHHHHHHHH
Confidence 478899999999999999999998654332 21 00 0112222 122233344332
Q ss_pred h----CCCeEEEEEcCCCChH--------------HHHHHhcCCCC--CCCCCEEEEEeCChhhhhhc---CCCceecCC
Q 001458 98 L----QRKKVLLVIDDVVDVK--------------QLQSLAGNREW--FGSGSRIIITSRDEHLLKTH---GVDEVYKPH 154 (1074)
Q Consensus 98 L----~~kr~LlVLDdv~~~~--------------~l~~l~~~~~~--~~~gs~IiiTTR~~~v~~~~---~~~~~~~l~ 154 (1074)
. +.-.+.+.+|.+|-.. -..+|+..++- .+.|-.-|-.|....++... .-..-++..
T Consensus 203 y~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaaTN~p~~LD~aiRsRFEeEIEF~ 282 (368)
T COG1223 203 YERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAATNRPELLDPAIRSRFEEEIEFK 282 (368)
T ss_pred HHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEeecCChhhcCHHHHhhhhheeeee
Confidence 2 2357899999987532 24445444432 23455555556554443321 123456667
Q ss_pred CCChHHHHHHHHHhhhc
Q 001458 155 GLNYDEALQLFNMKAFK 171 (1074)
Q Consensus 155 ~L~~~ea~~Lf~~~a~~ 171 (1074)
--+++|-.+++..++-+
T Consensus 283 LP~~eEr~~ile~y~k~ 299 (368)
T COG1223 283 LPNDEERLEILEYYAKK 299 (368)
T ss_pred CCChHHHHHHHHHHHHh
Confidence 77889999999888743
No 287
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=95.22 E-value=0.033 Score=55.63 Aligned_cols=81 Identities=11% Similarity=0.062 Sum_probs=45.1
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhcccccceEEEeechhhhccCChHHHHHHHHHHHhcccCCcccccc---chHHHHHhh
Q 001458 21 MIGICGMGGLGKTTIARVVYDLISHEFEASGFLDNVREISSKGGLVSLQRQLLSQLLKLADNSIWNVF---DGIDMLGSR 97 (1074)
Q Consensus 21 vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~ll~~l~~~~~~~~~~~~---~~~~~i~~~ 97 (1074)
++.|.|.+|.||||+|..+..+... ...|+. .....-.+.++.+-...... ......++ +....+...
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~---~~~~ia-----t~~~~~~e~~~ri~~h~~~R-~~~w~t~E~~~~l~~~i~~~ 73 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGL---QVLYIA-----TAQPFDDEMAARIAHHRQRR-PAHWQTVEEPLDLAELLRAD 73 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCC---CcEeCc-----CCCCChHHHHHHHHHHHhcC-CCCCeEecccccHHHHHHhh
Confidence 5899999999999999999876432 234443 11233345666665553322 22222222 222333332
Q ss_pred hCCCeEEEEEcCCC
Q 001458 98 LQRKKVLLVIDDVV 111 (1074)
Q Consensus 98 L~~kr~LlVLDdv~ 111 (1074)
..+ .-++++|.+.
T Consensus 74 ~~~-~~~VlID~Lt 86 (170)
T PRK05800 74 AAP-GRCVLVDCLT 86 (170)
T ss_pred cCC-CCEEEehhHH
Confidence 332 3368889863
No 288
>PRK04040 adenylate kinase; Provisional
Probab=95.22 E-value=0.02 Score=58.33 Aligned_cols=25 Identities=24% Similarity=0.542 Sum_probs=23.1
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHhc
Q 001458 20 RMIGICGMGGLGKTTIARVVYDLIS 44 (1074)
Q Consensus 20 ~vv~I~G~gGiGKTtLA~~v~~~~~ 44 (1074)
.+|+|+|++|.||||+|+.+.+++.
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 5899999999999999999999874
No 289
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=95.22 E-value=0.054 Score=60.47 Aligned_cols=49 Identities=20% Similarity=0.234 Sum_probs=34.1
Q ss_pred HHHHHhhcCCCCCeEEEEEEccCCCcHHHHHHHHHHHhcccc------cceEEEe
Q 001458 6 EKLRFLMDSGSSDVRMIGICGMGGLGKTTIARVVYDLISHEF------EASGFLD 54 (1074)
Q Consensus 6 ~~l~~lL~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F------~~~~~~~ 54 (1074)
..+..+|..+-..-.++-|+|.+|+|||++|.+++....... ..++|++
T Consensus 89 ~~lD~~l~GGi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~ 143 (317)
T PRK04301 89 KELDELLGGGIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYID 143 (317)
T ss_pred HHHHHHhcCCccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEe
Confidence 345555654434467889999999999999999986542211 3677776
No 290
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.19 E-value=0.0019 Score=66.61 Aligned_cols=100 Identities=24% Similarity=0.198 Sum_probs=65.5
Q ss_pred CCCCCEEEecCCCCCCccchhhcCCCCCCEEEcCCCcccccCcchhccCCCCEeecCCCCCCccc-cchhcccCCCCEEE
Q 001458 590 LKCLRSLKLSGCSKLKKFPEIVRSMKDLSELFLDGTSIKEVPSSIELLTKLELLNLSDCKNLVRL-PSSIIALKSLKTLN 668 (1074)
Q Consensus 590 l~~L~~L~Ls~~~~~~~~p~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~~l~~~-~~~~~~l~~L~~L~ 668 (1074)
+.+.+.|+..||..... .....|+.|+.|.|+-|.|+.+. .+..+++|+.|+|..|.+...- -.-+.++|+|+.|.
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence 44556666666654322 34556788888888888888774 3677888888888877643211 13355778888888
Q ss_pred ccCCcCCCcCcc-----cccCCCCccEEE
Q 001458 669 LSGCFKLENVPE-----TLGQIESLEELD 692 (1074)
Q Consensus 669 L~~c~~l~~~p~-----~l~~l~~L~~L~ 692 (1074)
|..|+-.+.-+. .+.-+++|++||
T Consensus 95 L~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 95 LDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hccCCcccccchhHHHHHHHHcccchhcc
Confidence 888776655442 356677777776
No 291
>PRK11823 DNA repair protein RadA; Provisional
Probab=95.14 E-value=0.061 Score=62.68 Aligned_cols=50 Identities=18% Similarity=0.182 Sum_probs=37.9
Q ss_pred HHHHHHhhcCCCCCeEEEEEEccCCCcHHHHHHHHHHHhcccccceEEEe
Q 001458 5 CEKLRFLMDSGSSDVRMIGICGMGGLGKTTIARVVYDLISHEFEASGFLD 54 (1074)
Q Consensus 5 ~~~l~~lL~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 54 (1074)
++++.++|..+-..-.++.|.|.+|+|||||+.+++.....+-..++|+.
T Consensus 66 i~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs 115 (446)
T PRK11823 66 IGELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVS 115 (446)
T ss_pred cHHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 56677777654444568999999999999999999987654444567765
No 292
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.13 E-value=0.081 Score=53.18 Aligned_cols=34 Identities=24% Similarity=0.433 Sum_probs=25.6
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHhcccccceEEEe
Q 001458 20 RMIGICGMGGLGKTTIARVVYDLISHEFEASGFLD 54 (1074)
Q Consensus 20 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 54 (1074)
.+++|.|..|.|||||++.++.... ...+.+++.
T Consensus 29 ~~~~l~G~nGsGKstLl~~i~G~~~-~~~G~i~~~ 62 (171)
T cd03228 29 EKVAIVGPSGSGKSTLLKLLLRLYD-PTSGEILID 62 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCC-CCCCEEEEC
Confidence 4789999999999999999987443 234445443
No 293
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=95.12 E-value=0.4 Score=48.94 Aligned_cols=141 Identities=18% Similarity=0.336 Sum_probs=81.4
Q ss_pred hhHHHHHHHhhcC-----------CCCCeEEEEEEccCCCcHHHHHHHHHHHhcccccceEEEeechhhhccCChHHHHH
Q 001458 2 DSRCEKLRFLMDS-----------GSSDVRMIGICGMGGLGKTTIARVVYDLISHEFEASGFLDNVREISSKGGLVSLQR 70 (1074)
Q Consensus 2 ~~~~~~l~~lL~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~ 70 (1074)
|..++++++.++. +-...+=|.++|++|.|||-||++||+.- .+.|+. +| +.+-+|+
T Consensus 153 d~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht-----~c~fir----vs---gselvqk 220 (404)
T KOG0728|consen 153 DKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHT-----DCTFIR----VS---GSELVQK 220 (404)
T ss_pred HHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhc-----ceEEEE----ec---hHHHHHH
Confidence 4566666665542 22345678999999999999999999743 233333 22 1111222
Q ss_pred HHHHHHhcccCCccccccchHHHHHhhh----CCCeEEEEEcCCCChH--------------H--HHHHhcCCCCC--CC
Q 001458 71 QLLSQLLKLADNSIWNVFDGIDMLGSRL----QRKKVLLVIDDVVDVK--------------Q--LQSLAGNREWF--GS 128 (1074)
Q Consensus 71 ~ll~~l~~~~~~~~~~~~~~~~~i~~~L----~~kr~LlVLDdv~~~~--------------~--l~~l~~~~~~~--~~ 128 (1074)
-| + ++..++++.. ..-+-.|+.|.+|... | .-+++..++-| .+
T Consensus 221 ~i-----g----------egsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatk 285 (404)
T KOG0728|consen 221 YI-----G----------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATK 285 (404)
T ss_pred Hh-----h----------hhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhcccccccc
Confidence 11 1 1223333322 2356788888887531 1 11222333322 35
Q ss_pred CCEEEEEeCChhhhh-----hcCCCceecCCCCChHHHHHHHHHhh
Q 001458 129 GSRIIITSRDEHLLK-----THGVDEVYKPHGLNYDEALQLFNMKA 169 (1074)
Q Consensus 129 gs~IiiTTR~~~v~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~a 169 (1074)
.-+||..|..-+++. .-..+..++.++-+++...++++-+.
T Consensus 286 nikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihs 331 (404)
T KOG0728|consen 286 NIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHS 331 (404)
T ss_pred ceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhh
Confidence 678888776544433 22456778999999888888887665
No 294
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=95.12 E-value=0.05 Score=54.62 Aligned_cols=119 Identities=14% Similarity=0.047 Sum_probs=60.9
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhcccccceEEEeechhhhccCChHHHHHHHHHHHh--c-ccC------C---cccc
Q 001458 19 VRMIGICGMGGLGKTTIARVVYDLISHEFEASGFLDNVREISSKGGLVSLQRQLLSQLL--K-LAD------N---SIWN 86 (1074)
Q Consensus 19 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~ll~~l~--~-~~~------~---~~~~ 86 (1074)
...|-|+|-.|-||||.|..++-+...+=-.+.++.=.+... ..+=....+.+- .+. . ... . ....
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~~-~~GE~~~l~~l~-~v~~~~~g~~~~~~~~~~~e~~~~ 99 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGAW-STGERNLLEFGG-GVEFHVMGTGFTWETQDRERDIAA 99 (191)
T ss_pred CCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCC-ccCHHHHHhcCC-CcEEEECCCCCcccCCCcHHHHHH
Confidence 467899999999999999999876544433343333222110 112122222210 000 0 000 0 0011
Q ss_pred ccchHHHHHhhhCC-CeEEEEEcCCCChH-----HHHHHhcCCCCCCCCCEEEEEeCCh
Q 001458 87 VFDGIDMLGSRLQR-KKVLLVIDDVVDVK-----QLQSLAGNREWFGSGSRIIITSRDE 139 (1074)
Q Consensus 87 ~~~~~~~i~~~L~~-kr~LlVLDdv~~~~-----~l~~l~~~~~~~~~gs~IiiTTR~~ 139 (1074)
..++.+..++.+.. +-=|||||.+...- +.+.+...+....++..||+|-|+.
T Consensus 100 ~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~ 158 (191)
T PRK05986 100 AREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGA 158 (191)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCC
Confidence 12233444555544 44599999985432 1233332222235778999999984
No 295
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=95.12 E-value=0.022 Score=56.91 Aligned_cols=36 Identities=22% Similarity=0.266 Sum_probs=27.9
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhc-ccccceEEEe
Q 001458 19 VRMIGICGMGGLGKTTIARVVYDLIS-HEFEASGFLD 54 (1074)
Q Consensus 19 ~~vv~I~G~gGiGKTtLA~~v~~~~~-~~F~~~~~~~ 54 (1074)
..++.+.|+.|+|||.+|+++++.+. +.....+-++
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d 39 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRID 39 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEE
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHh
Confidence 35688999999999999999999876 4544444443
No 296
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.11 E-value=0.16 Score=58.69 Aligned_cols=36 Identities=17% Similarity=0.207 Sum_probs=27.1
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhc--ccccceEEEe
Q 001458 19 VRMIGICGMGGLGKTTIARVVYDLIS--HEFEASGFLD 54 (1074)
Q Consensus 19 ~~vv~I~G~gGiGKTtLA~~v~~~~~--~~F~~~~~~~ 54 (1074)
-++++++|++|+||||++..++.... ..-..+.++.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~ 258 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALIT 258 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 36899999999999999999987654 3333455554
No 297
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.08 E-value=0.11 Score=56.21 Aligned_cols=38 Identities=18% Similarity=0.241 Sum_probs=29.1
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHHHHhcccccceEEEe
Q 001458 17 SDVRMIGICGMGGLGKTTIARVVYDLISHEFEASGFLD 54 (1074)
Q Consensus 17 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 54 (1074)
...++|+++|++|+||||+|..++..+...-..+.+++
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~ 107 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAA 107 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEe
Confidence 34689999999999999999999987655533444443
No 298
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.08 E-value=0.07 Score=53.65 Aligned_cols=23 Identities=35% Similarity=0.424 Sum_probs=20.9
Q ss_pred EEEEEccCCCcHHHHHHHHHHHh
Q 001458 21 MIGICGMGGLGKTTIARVVYDLI 43 (1074)
Q Consensus 21 vv~I~G~gGiGKTtLA~~v~~~~ 43 (1074)
-|.|.|.+|.||||+|+.+++++
T Consensus 2 riiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999999974
No 299
>PRK03839 putative kinase; Provisional
Probab=95.06 E-value=0.019 Score=58.35 Aligned_cols=25 Identities=32% Similarity=0.640 Sum_probs=22.2
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhcc
Q 001458 21 MIGICGMGGLGKTTIARVVYDLISH 45 (1074)
Q Consensus 21 vv~I~G~gGiGKTtLA~~v~~~~~~ 45 (1074)
.|.|.|++|.||||+|++++++..-
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~ 26 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGY 26 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4889999999999999999998743
No 300
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.06 E-value=0.095 Score=53.52 Aligned_cols=34 Identities=24% Similarity=0.086 Sum_probs=26.4
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhcccccceEEEe
Q 001458 21 MIGICGMGGLGKTTIARVVYDLISHEFEASGFLD 54 (1074)
Q Consensus 21 vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 54 (1074)
++.|.|.+|+|||++|.+++......=..++|+.
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s 34 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLARGEPGLYVT 34 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 3689999999999999998875544445667764
No 301
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.06 E-value=0.057 Score=53.96 Aligned_cols=24 Identities=29% Similarity=0.415 Sum_probs=21.4
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHh
Q 001458 20 RMIGICGMGGLGKTTIARVVYDLI 43 (1074)
Q Consensus 20 ~vv~I~G~gGiGKTtLA~~v~~~~ 43 (1074)
.+++|.|..|.|||||++.++...
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~G~~ 51 (166)
T cd03223 28 DRLLITGPSGTGKSSLFRALAGLW 51 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 479999999999999999998643
No 302
>PRK04328 hypothetical protein; Provisional
Probab=95.05 E-value=0.074 Score=57.02 Aligned_cols=50 Identities=12% Similarity=0.102 Sum_probs=37.1
Q ss_pred HHHHHHhhcCCCCCeEEEEEEccCCCcHHHHHHHHHHHhcccccceEEEe
Q 001458 5 CEKLRFLMDSGSSDVRMIGICGMGGLGKTTIARVVYDLISHEFEASGFLD 54 (1074)
Q Consensus 5 ~~~l~~lL~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 54 (1074)
++.|.++|..+-..-.++.|.|.+|.|||+||.++...-..+-+.++|+.
T Consensus 9 i~~LD~lL~GGip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis 58 (249)
T PRK04328 9 IPGMDEILYGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVA 58 (249)
T ss_pred chhHHHHhcCCCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE
Confidence 45677777654444578999999999999999997765444456677765
No 303
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=95.05 E-value=0.098 Score=51.15 Aligned_cols=24 Identities=38% Similarity=0.596 Sum_probs=21.5
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhc
Q 001458 21 MIGICGMGGLGKTTIARVVYDLIS 44 (1074)
Q Consensus 21 vv~I~G~gGiGKTtLA~~v~~~~~ 44 (1074)
+|.|.|.+|.||||+|+.+.....
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~ 24 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLF 24 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999998664
No 304
>PTZ00301 uridine kinase; Provisional
Probab=95.04 E-value=0.02 Score=59.26 Aligned_cols=29 Identities=24% Similarity=0.473 Sum_probs=24.6
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhcccc
Q 001458 19 VRMIGICGMGGLGKTTIARVVYDLISHEF 47 (1074)
Q Consensus 19 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F 47 (1074)
..+|||.|.+|.||||||+.+.+++...+
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~~~~ 31 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELMAHC 31 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHHhhc
Confidence 46899999999999999999988764433
No 305
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=95.03 E-value=0.095 Score=56.35 Aligned_cols=26 Identities=27% Similarity=0.540 Sum_probs=22.3
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhccc
Q 001458 21 MIGICGMGGLGKTTIARVVYDLISHE 46 (1074)
Q Consensus 21 vv~I~G~gGiGKTtLA~~v~~~~~~~ 46 (1074)
+|.+.|++|.||||+|+++.+.....
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~~ 26 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSEK 26 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 37899999999999999999876543
No 306
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.03 E-value=0.022 Score=59.48 Aligned_cols=27 Identities=41% Similarity=0.688 Sum_probs=24.4
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHHHHh
Q 001458 17 SDVRMIGICGMGGLGKTTIARVVYDLI 43 (1074)
Q Consensus 17 ~~~~vv~I~G~gGiGKTtLA~~v~~~~ 43 (1074)
....+|+|.|.+|+||||||+.++..+
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 356799999999999999999999876
No 307
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.02 E-value=0.02 Score=47.58 Aligned_cols=23 Identities=35% Similarity=0.614 Sum_probs=21.1
Q ss_pred EEEEEccCCCcHHHHHHHHHHHh
Q 001458 21 MIGICGMGGLGKTTIARVVYDLI 43 (1074)
Q Consensus 21 vv~I~G~gGiGKTtLA~~v~~~~ 43 (1074)
+|+|.|..|.||||+|+++.+.+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999875
No 308
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.01 E-value=0.098 Score=59.66 Aligned_cols=41 Identities=17% Similarity=0.343 Sum_probs=34.3
Q ss_pred hHHHHHHHhhc-----CCCCCeEEEEEEccCCCcHHHHHHHHHHHh
Q 001458 3 SRCEKLRFLMD-----SGSSDVRMIGICGMGGLGKTTIARVVYDLI 43 (1074)
Q Consensus 3 ~~~~~l~~lL~-----~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 43 (1074)
..+++++.||. ...-+.+|+.|.|++|.||||.++.+....
T Consensus 89 kKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskel 134 (634)
T KOG1970|consen 89 KKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKEL 134 (634)
T ss_pred HhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhh
Confidence 46788999988 344567899999999999999999998754
No 309
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=94.99 E-value=0.015 Score=53.32 Aligned_cols=26 Identities=31% Similarity=0.438 Sum_probs=21.8
Q ss_pred EEEEccCCCcHHHHHHHHHHHhcccc
Q 001458 22 IGICGMGGLGKTTIARVVYDLISHEF 47 (1074)
Q Consensus 22 v~I~G~gGiGKTtLA~~v~~~~~~~F 47 (1074)
|-|+|.+|+|||++|+.++..+.+.+
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~ 26 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHI 26 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 46899999999999999988665443
No 310
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=94.99 E-value=0.073 Score=57.64 Aligned_cols=25 Identities=28% Similarity=0.492 Sum_probs=21.7
Q ss_pred CCCeEEEEEEccCCCcHHHHHHHHH
Q 001458 16 SSDVRMIGICGMGGLGKTTIARVVY 40 (1074)
Q Consensus 16 ~~~~~vv~I~G~gGiGKTtLA~~v~ 40 (1074)
.+++..|.+.|.+|.|||-||-+..
T Consensus 242 d~dI~lV~L~G~AGtGKTlLALaAg 266 (436)
T COG1875 242 DDDIDLVSLGGKAGTGKTLLALAAG 266 (436)
T ss_pred CCCCCeEEeeccCCccHhHHHHHHH
Confidence 3678999999999999999997654
No 311
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=94.98 E-value=0.02 Score=57.60 Aligned_cols=26 Identities=35% Similarity=0.484 Sum_probs=23.8
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhc
Q 001458 19 VRMIGICGMGGLGKTTIARVVYDLIS 44 (1074)
Q Consensus 19 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 44 (1074)
..+|+|-||=|+||||||+.++++..
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~ 29 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLG 29 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhC
Confidence 36899999999999999999999876
No 312
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=94.98 E-value=0.071 Score=62.21 Aligned_cols=50 Identities=20% Similarity=0.209 Sum_probs=37.3
Q ss_pred HHHHHHhhcCCCCCeEEEEEEccCCCcHHHHHHHHHHHhcccccceEEEe
Q 001458 5 CEKLRFLMDSGSSDVRMIGICGMGGLGKTTIARVVYDLISHEFEASGFLD 54 (1074)
Q Consensus 5 ~~~l~~lL~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 54 (1074)
+++|.++|..+-..-.++.|.|.+|+|||||+.+++......-..++|+.
T Consensus 80 i~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs 129 (454)
T TIGR00416 80 FGELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVS 129 (454)
T ss_pred cHHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE
Confidence 45677777644444578999999999999999999876654434566765
No 313
>PRK00625 shikimate kinase; Provisional
Probab=94.95 E-value=0.021 Score=57.21 Aligned_cols=24 Identities=29% Similarity=0.636 Sum_probs=21.7
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhc
Q 001458 21 MIGICGMGGLGKTTIARVVYDLIS 44 (1074)
Q Consensus 21 vv~I~G~gGiGKTtLA~~v~~~~~ 44 (1074)
.|.++||.|+||||+|+.++++..
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~ 25 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLS 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 388999999999999999998764
No 314
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.95 E-value=0.13 Score=58.32 Aligned_cols=141 Identities=18% Similarity=0.178 Sum_probs=78.1
Q ss_pred hHHHHHHHhhcCC-------CCCeEEEEEEccCCCcHHHHHHHHHHHhcccccceEEEeechhhhccCChHHHHHHHHHH
Q 001458 3 SRCEKLRFLMDSG-------SSDVRMIGICGMGGLGKTTIARVVYDLISHEFEASGFLDNVREISSKGGLVSLQRQLLSQ 75 (1074)
Q Consensus 3 ~~~~~l~~lL~~~-------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~ll~~ 75 (1074)
.++|++.+.|... ..=.+=|.++|++|.|||-|||+++-...- -+|.. + ...+. ++
T Consensus 314 ~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~V----PFF~~-----s-GSEFd----Em--- 376 (752)
T KOG0734|consen 314 QELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGV----PFFYA-----S-GSEFD----EM--- 376 (752)
T ss_pred HHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCC----CeEec-----c-ccchh----hh---
Confidence 4677777777642 112566899999999999999999854321 12221 1 00000 00
Q ss_pred HhcccCCccccccchHHHHHhhh----CCCeEEEEEcCCCChH-------------HHHHHhcCCCCCCCCCEEEE--Ee
Q 001458 76 LLKLADNSIWNVFDGIDMLGSRL----QRKKVLLVIDDVVDVK-------------QLQSLAGNREWFGSGSRIII--TS 136 (1074)
Q Consensus 76 l~~~~~~~~~~~~~~~~~i~~~L----~~kr~LlVLDdv~~~~-------------~l~~l~~~~~~~~~gs~Iii--TT 136 (1074)
-+..+..++++.. +.-++.|++|.+|... .+..++...+-|.+..-||| .|
T Consensus 377 ----------~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIvigAT 446 (752)
T KOG0734|consen 377 ----------FVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVIGAT 446 (752)
T ss_pred ----------hhcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCceEEEecc
Confidence 0112233444333 3456999999987531 26666666666655544444 33
Q ss_pred CChhhh-hhc---C-CCceecCCCCChHHHHHHHHHhhh
Q 001458 137 RDEHLL-KTH---G-VDEVYKPHGLNYDEALQLFNMKAF 170 (1074)
Q Consensus 137 R~~~v~-~~~---~-~~~~~~l~~L~~~ea~~Lf~~~a~ 170 (1074)
...+.+ ... | -+..+.|+.-+..--.++|.++.-
T Consensus 447 Nfpe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ 485 (752)
T KOG0734|consen 447 NFPEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLS 485 (752)
T ss_pred CChhhhhHHhcCCCccceeEecCCCCcccHHHHHHHHHh
Confidence 333322 222 2 244566666666666777776653
No 315
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=94.95 E-value=0.1 Score=53.00 Aligned_cols=118 Identities=22% Similarity=0.302 Sum_probs=59.7
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHhcccccceEEEeechhhhccCChHHHH------HHHHHHHhcc--cCCccccccchH
Q 001458 20 RMIGICGMGGLGKTTIARVVYDLISHEFEASGFLDNVREISSKGGLVSLQ------RQLLSQLLKL--ADNSIWNVFDGI 91 (1074)
Q Consensus 20 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~------~~ll~~l~~~--~~~~~~~~~~~~ 91 (1074)
.+++|.|..|.|||||++.++.... ...+.+++.... +. ........ -+++..+.-. .+........+.
T Consensus 26 ~~~~l~G~nGsGKStLl~~i~G~~~-~~~G~v~~~g~~-~~-~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~G~ 102 (180)
T cd03214 26 EIVGILGPNGAGKSTLLKTLAGLLK-PSSGEILLDGKD-LA-SLSPKELARKIAYVPQALELLGLAHLADRPFNELSGGE 102 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC-CCCcEEEECCEE-CC-cCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCHHH
Confidence 4799999999999999999987443 244555554211 11 00111111 1122222110 011122222222
Q ss_pred ---HHHHhhhCCCeEEEEEcCCCCh---H---HHHHHhcCCCCCCC-CCEEEEEeCChhhh
Q 001458 92 ---DMLGSRLQRKKVLLVIDDVVDV---K---QLQSLAGNREWFGS-GSRIIITSRDEHLL 142 (1074)
Q Consensus 92 ---~~i~~~L~~kr~LlVLDdv~~~---~---~l~~l~~~~~~~~~-gs~IiiTTR~~~v~ 142 (1074)
-.+-..+-..+-++++|+.... + .+..+..... .. |..||++|.+....
T Consensus 103 ~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~--~~~~~tiii~sh~~~~~ 161 (180)
T cd03214 103 RQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLA--RERGKTVVMVLHDLNLA 161 (180)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHH--HhcCCEEEEEeCCHHHH
Confidence 2234455567788999996431 2 2222222211 22 67889999886654
No 316
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=94.93 E-value=0.059 Score=59.54 Aligned_cols=50 Identities=14% Similarity=0.217 Sum_probs=34.5
Q ss_pred HHHHHHhhcCCCCCeEEEEEEccCCCcHHHHHHHHHHHh--c----ccccceEEEe
Q 001458 5 CEKLRFLMDSGSSDVRMIGICGMGGLGKTTIARVVYDLI--S----HEFEASGFLD 54 (1074)
Q Consensus 5 ~~~l~~lL~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~--~----~~F~~~~~~~ 54 (1074)
++.|..+|..+-..-+++-|+|.+|+||||||.+++-.. . ..=..++|++
T Consensus 82 ~~~LD~lLgGGi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYId 137 (313)
T TIGR02238 82 SQALDGILGGGIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYID 137 (313)
T ss_pred CHHHHHHhCCCCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEE
Confidence 345667776444456788999999999999998876422 1 1223567776
No 317
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=94.92 E-value=0.028 Score=58.50 Aligned_cols=28 Identities=43% Similarity=0.677 Sum_probs=24.4
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHHHHhc
Q 001458 17 SDVRMIGICGMGGLGKTTIARVVYDLIS 44 (1074)
Q Consensus 17 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 44 (1074)
....+|+|.|++|.||||||+.++....
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3458999999999999999999998654
No 318
>PRK10867 signal recognition particle protein; Provisional
Probab=94.87 E-value=0.2 Score=57.58 Aligned_cols=28 Identities=29% Similarity=0.419 Sum_probs=24.1
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhccc
Q 001458 19 VRMIGICGMGGLGKTTIARVVYDLISHE 46 (1074)
Q Consensus 19 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 46 (1074)
..+|.++|.+|+||||+|..++..+..+
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~l~~~ 127 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKYLKKK 127 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHh
Confidence 6899999999999999998888766544
No 319
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=94.85 E-value=0.096 Score=57.88 Aligned_cols=49 Identities=22% Similarity=0.239 Sum_probs=38.0
Q ss_pred HHHHHHhhcCCCCCeEEEEEEccCCCcHHHHHHHHHHHhcccccceEEEe
Q 001458 5 CEKLRFLMDSGSSDVRMIGICGMGGLGKTTIARVVYDLISHEFEASGFLD 54 (1074)
Q Consensus 5 ~~~l~~lL~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 54 (1074)
+.++.+.|..+--.-.+|.|-|-+|||||||.-+++.++..+- .+.|+.
T Consensus 79 ~~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVs 127 (456)
T COG1066 79 IEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVS 127 (456)
T ss_pred hHHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEe
Confidence 4566676653322346899999999999999999999988776 777765
No 320
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=94.84 E-value=0.091 Score=51.56 Aligned_cols=20 Identities=35% Similarity=0.321 Sum_probs=18.6
Q ss_pred EEccCCCcHHHHHHHHHHHh
Q 001458 24 ICGMGGLGKTTIARVVYDLI 43 (1074)
Q Consensus 24 I~G~gGiGKTtLA~~v~~~~ 43 (1074)
|.|++|.||||+|+.+++++
T Consensus 1 i~G~PgsGK~t~~~~la~~~ 20 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRY 20 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhc
Confidence 68999999999999999875
No 321
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=94.84 E-value=0.065 Score=57.48 Aligned_cols=47 Identities=26% Similarity=0.265 Sum_probs=36.7
Q ss_pred HHHhhcCCCCCeEEEEEEccCCCcHHHHHHHHHHHhcccccceEEEe
Q 001458 8 LRFLMDSGSSDVRMIGICGMGGLGKTTIARVVYDLISHEFEASGFLD 54 (1074)
Q Consensus 8 l~~lL~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 54 (1074)
|..+|..+-..-+++=|+|+.|.||||+|.+++-.....-..++|++
T Consensus 49 LD~~LGGGl~~g~ItEiyG~~gsGKT~lal~~~~~aq~~g~~a~fID 95 (279)
T COG0468 49 LDEALGGGLPRGRITEIYGPESSGKTTLALQLVANAQKPGGKAAFID 95 (279)
T ss_pred HHHHhcCCcccceEEEEecCCCcchhhHHHHHHHHhhcCCCeEEEEe
Confidence 44455433345689999999999999999999876666666889987
No 322
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=94.81 E-value=0.13 Score=51.70 Aligned_cols=26 Identities=31% Similarity=0.455 Sum_probs=23.0
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhccc
Q 001458 21 MIGICGMGGLGKTTIARVVYDLISHE 46 (1074)
Q Consensus 21 vv~I~G~gGiGKTtLA~~v~~~~~~~ 46 (1074)
++.+.|++|.||||+++.++..+...
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~ 27 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKK 27 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 67899999999999999999877655
No 323
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=94.80 E-value=0.12 Score=65.11 Aligned_cols=27 Identities=26% Similarity=0.402 Sum_probs=23.2
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhcc
Q 001458 19 VRMIGICGMGGLGKTTIARVVYDLISH 45 (1074)
Q Consensus 19 ~~vv~I~G~gGiGKTtLA~~v~~~~~~ 45 (1074)
..++.++|+.|+|||.+|+++++.+.+
T Consensus 596 ~~~~lf~Gp~GvGKT~lA~~La~~l~~ 622 (852)
T TIGR03345 596 LGVFLLVGPSGVGKTETALALAELLYG 622 (852)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHhC
Confidence 457899999999999999999987643
No 324
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=94.80 E-value=0.035 Score=61.42 Aligned_cols=42 Identities=17% Similarity=0.278 Sum_probs=31.5
Q ss_pred hhHHHHHHHhhcC---C-CCCeEEEEEEccCCCcHHHHHHHHHHHh
Q 001458 2 DSRCEKLRFLMDS---G-SSDVRMIGICGMGGLGKTTIARVVYDLI 43 (1074)
Q Consensus 2 ~~~~~~l~~lL~~---~-~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 43 (1074)
+..++++...+.. + ...-++++++|++|.||||||+++++.+
T Consensus 57 ~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l 102 (361)
T smart00763 57 EEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGL 102 (361)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4556666665543 1 2346889999999999999999999855
No 325
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=94.80 E-value=0.12 Score=51.44 Aligned_cols=22 Identities=32% Similarity=0.412 Sum_probs=19.4
Q ss_pred EEEEEccCCCcHHHHHHHHHHH
Q 001458 21 MIGICGMGGLGKTTIARVVYDL 42 (1074)
Q Consensus 21 vv~I~G~gGiGKTtLA~~v~~~ 42 (1074)
-|.|+|..|.||+.+|+.+++.
T Consensus 24 pVlI~GE~GtGK~~lA~~IH~~ 45 (168)
T PF00158_consen 24 PVLITGETGTGKELLARAIHNN 45 (168)
T ss_dssp -EEEECSTTSSHHHHHHHHHHC
T ss_pred CEEEEcCCCCcHHHHHHHHHHh
Confidence 4679999999999999999983
No 326
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.70 E-value=0.1 Score=58.62 Aligned_cols=36 Identities=22% Similarity=0.289 Sum_probs=27.6
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhcccc--cceEEEe
Q 001458 19 VRMIGICGMGGLGKTTIARVVYDLISHEF--EASGFLD 54 (1074)
Q Consensus 19 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F--~~~~~~~ 54 (1074)
-.+++++|+.|+||||++.+++.+...++ ..+.++.
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit 174 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLT 174 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEe
Confidence 46899999999999999999998764443 3444443
No 327
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=94.69 E-value=0.14 Score=51.95 Aligned_cols=24 Identities=25% Similarity=0.447 Sum_probs=21.4
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHh
Q 001458 20 RMIGICGMGGLGKTTIARVVYDLI 43 (1074)
Q Consensus 20 ~vv~I~G~gGiGKTtLA~~v~~~~ 43 (1074)
.+++|.|..|.|||||++.++-..
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 29 EKIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhccC
Confidence 479999999999999999998643
No 328
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=94.66 E-value=0.044 Score=58.05 Aligned_cols=31 Identities=29% Similarity=0.560 Sum_probs=26.6
Q ss_pred CCCeEEEEEEccCCCcHHHHHHHHHHHhccc
Q 001458 16 SSDVRMIGICGMGGLGKTTIARVVYDLISHE 46 (1074)
Q Consensus 16 ~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 46 (1074)
.....+|||.|+.|.|||||++.+...++..
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~ 60 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEALLQQD 60 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 4568899999999999999999999866543
No 329
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.65 E-value=0.18 Score=56.16 Aligned_cols=37 Identities=27% Similarity=0.389 Sum_probs=28.4
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHHHhcccccceEEEe
Q 001458 18 DVRMIGICGMGGLGKTTIARVVYDLISHEFEASGFLD 54 (1074)
Q Consensus 18 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 54 (1074)
..++|+++|+.|+||||++..++.....+-..+.+++
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lIt 241 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFIT 241 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 4689999999999999999999876544333455554
No 330
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=94.63 E-value=0.058 Score=57.94 Aligned_cols=49 Identities=20% Similarity=0.215 Sum_probs=32.8
Q ss_pred HHHHHhhcCCCCCeEEEEEEccCCCcHHHHHHHHHHHhc------ccccceEEEe
Q 001458 6 EKLRFLMDSGSSDVRMIGICGMGGLGKTTIARVVYDLIS------HEFEASGFLD 54 (1074)
Q Consensus 6 ~~l~~lL~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~------~~F~~~~~~~ 54 (1074)
+.|..+|..+-..-.+.=|+|.+|+|||+||..++-... +.=..++|++
T Consensus 25 ~~lD~~L~GGi~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyid 79 (256)
T PF08423_consen 25 KSLDELLGGGIPTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYID 79 (256)
T ss_dssp HHHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEE
T ss_pred HHHHHhhCCCCCCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEe
Confidence 456677753322345889999999999999998874332 1123467776
No 331
>PRK00131 aroK shikimate kinase; Reviewed
Probab=94.62 E-value=0.028 Score=56.65 Aligned_cols=26 Identities=31% Similarity=0.412 Sum_probs=23.3
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhc
Q 001458 19 VRMIGICGMGGLGKTTIARVVYDLIS 44 (1074)
Q Consensus 19 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 44 (1074)
...|.|+|++|.||||+|++++++..
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l~ 29 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRLG 29 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhC
Confidence 35799999999999999999999874
No 332
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=94.60 E-value=0.18 Score=54.95 Aligned_cols=52 Identities=25% Similarity=0.201 Sum_probs=35.4
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhccc-ccceEEEeechhhhccCChHHHHHHHHHHH
Q 001458 19 VRMIGICGMGGLGKTTIARVVYDLISHE-FEASGFLDNVREISSKGGLVSLQRQLLSQL 76 (1074)
Q Consensus 19 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~-F~~~~~~~~~~~~s~~~~~~~l~~~ll~~l 76 (1074)
-.++.|.|.+|+||||+|.+++.....+ -..++|+. -.....++...+...+
T Consensus 30 g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS------~E~~~~~~~~r~~~~~ 82 (271)
T cd01122 30 GELIILTAGTGVGKTTFLREYALDLITQHGVRVGTIS------LEEPVVRTARRLLGQY 82 (271)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEE------cccCHHHHHHHHHHHH
Confidence 4578999999999999999998765443 34566664 1223455566655543
No 333
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.59 E-value=0.079 Score=53.30 Aligned_cols=24 Identities=38% Similarity=0.657 Sum_probs=21.3
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHh
Q 001458 20 RMIGICGMGGLGKTTIARVVYDLI 43 (1074)
Q Consensus 20 ~vv~I~G~gGiGKTtLA~~v~~~~ 43 (1074)
.+++|.|..|.|||||++.++...
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcCC
Confidence 479999999999999999998643
No 334
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=94.59 E-value=0.34 Score=50.56 Aligned_cols=197 Identities=16% Similarity=0.194 Sum_probs=105.2
Q ss_pred HHHHhhcCCCCCeEEEEEEccCCCcHHHHHHHHHHHhcc------cccceEEEeechh------hhccC-----------
Q 001458 7 KLRFLMDSGSSDVRMIGICGMGGLGKTTIARVVYDLISH------EFEASGFLDNVRE------ISSKG----------- 63 (1074)
Q Consensus 7 ~l~~lL~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~------~F~~~~~~~~~~~------~s~~~----------- 63 (1074)
+++++.. ..+..-..++|+.|.||-|.+.++.+.+-+ +-+...|...... ++..+
T Consensus 24 ~Lksl~~--~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHlEitPSDaG~ 101 (351)
T KOG2035|consen 24 LLKSLSS--TGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHLEITPSDAGN 101 (351)
T ss_pred HHHHhcc--cCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceEEeChhhcCc
Confidence 3444443 345677889999999999999988875422 2223334332111 11110
Q ss_pred ChHHHHHHHHHHHhcccCCccccccchHHHHHhhhCCCeE-EEEEcCCCChH--HHHHHhcCCCCCCCCCEEEEEeCCh-
Q 001458 64 GLVSLQRQLLSQLLKLADNSIWNVFDGIDMLGSRLQRKKV-LLVIDDVVDVK--QLQSLAGNREWFGSGSRIIITSRDE- 139 (1074)
Q Consensus 64 ~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~~kr~-LlVLDdv~~~~--~l~~l~~~~~~~~~gs~IiiTTR~~- 139 (1074)
.-.-+.++++.++......+ .. ..|.| ++|+-.+|+.. .-.++..........+|+|+...+-
T Consensus 102 ~DRvViQellKevAQt~qie------------~~-~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~~RlIl~cns~S 168 (351)
T KOG2035|consen 102 YDRVVIQELLKEVAQTQQIE------------TQ-GQRPFKVVVINEADELTRDAQHALRRTMEKYSSNCRLILVCNSTS 168 (351)
T ss_pred ccHHHHHHHHHHHHhhcchh------------hc-cccceEEEEEechHhhhHHHHHHHHHHHHHHhcCceEEEEecCcc
Confidence 11223334444432211111 11 12233 56677776643 2223332222234567887754431
Q ss_pred hh-hhhcCCCceecCCCCChHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCCc-hHHHHHHhh-c------CC---C
Q 001458 140 HL-LKTHGVDEVYKPHGLNYDEALQLFNMKAFKTYQPLQECVQLSARIIRYAGGLP-LALEVLGSF-L------SG---R 207 (1074)
Q Consensus 140 ~v-~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlP-Lal~~~g~~-L------~~---~ 207 (1074)
.+ ...-...-.+.+.+.+++|-...++..+-+..-.-+ .+++.+|+++++|+- -||-++-.. + .. .
T Consensus 169 riIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp--~~~l~rIa~kS~~nLRrAllmlE~~~~~n~~~~a~~~~i 246 (351)
T KOG2035|consen 169 RIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLP--KELLKRIAEKSNRNLRRALLMLEAVRVNNEPFTANSQVI 246 (351)
T ss_pred cchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccCc--HHHHHHHHHHhcccHHHHHHHHHHHHhccccccccCCCC
Confidence 12 111122346789999999999999987755443333 578999999999964 333333211 1 11 2
Q ss_pred CHHHHHHHHHHHh
Q 001458 208 SVDEWRSTLERLE 220 (1074)
Q Consensus 208 ~~~~w~~~l~~l~ 220 (1074)
...+|+-.+....
T Consensus 247 ~~~dWe~~i~e~a 259 (351)
T KOG2035|consen 247 PKPDWEIYIQEIA 259 (351)
T ss_pred CCccHHHHHHHHH
Confidence 4568999888754
No 335
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=94.58 E-value=0.03 Score=57.28 Aligned_cols=26 Identities=27% Similarity=0.321 Sum_probs=23.5
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHHHh
Q 001458 18 DVRMIGICGMGGLGKTTIARVVYDLI 43 (1074)
Q Consensus 18 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 43 (1074)
++.+|+|.|++|+||||+|+.+++..
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 46799999999999999999999765
No 336
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=94.57 E-value=0.13 Score=65.37 Aligned_cols=28 Identities=21% Similarity=0.428 Sum_probs=23.5
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhccc
Q 001458 19 VRMIGICGMGGLGKTTIARVVYDLISHE 46 (1074)
Q Consensus 19 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 46 (1074)
..++.+.|+.|+|||++|+.++......
T Consensus 595 ~~~~Lf~Gp~GvGKt~lA~~La~~l~~~ 622 (852)
T TIGR03346 595 IGSFLFLGPTGVGKTELAKALAEFLFDD 622 (852)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhcCC
Confidence 3567899999999999999999866443
No 337
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=94.55 E-value=0.2 Score=58.43 Aligned_cols=91 Identities=16% Similarity=0.111 Sum_probs=55.5
Q ss_pred CCeEEEEEcCCCCh--HHHHHHhcCCCCCCCCCEEEEEeCChh-hhhh-cCCCceecCCCCChHHHHHHHHHhhhcCCCC
Q 001458 100 RKKVLLVIDDVVDV--KQLQSLAGNREWFGSGSRIIITSRDEH-LLKT-HGVDEVYKPHGLNYDEALQLFNMKAFKTYQP 175 (1074)
Q Consensus 100 ~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~gs~IiiTTR~~~-v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~ 175 (1074)
+|-=+.|+|.|+-. ..+..|+..+.--.+.-..|..|++.+ +... ......|..+.++.++-...+...+-...-.
T Consensus 118 ~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~ 197 (515)
T COG2812 118 GRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPNTILSRCQRFDFKRLDLEEIAKHLAAILDKEGIN 197 (515)
T ss_pred ccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCchhhhhccccccccCCCHHHHHHHHHHHHHhcCCc
Confidence 45557889999754 347777655443345666677777643 3333 2345689999999998888887666332221
Q ss_pred ChhHHHHHHHHHHHhCC
Q 001458 176 LQECVQLSARIIRYAGG 192 (1074)
Q Consensus 176 ~~~~~~~~~~i~~~~~G 192 (1074)
...+...-|++..+|
T Consensus 198 --~e~~aL~~ia~~a~G 212 (515)
T COG2812 198 --IEEDALSLIARAAEG 212 (515)
T ss_pred --cCHHHHHHHHHHcCC
Confidence 122344455555555
No 338
>PRK13947 shikimate kinase; Provisional
Probab=94.55 E-value=0.029 Score=56.44 Aligned_cols=27 Identities=37% Similarity=0.498 Sum_probs=23.2
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhcccc
Q 001458 21 MIGICGMGGLGKTTIARVVYDLISHEF 47 (1074)
Q Consensus 21 vv~I~G~gGiGKTtLA~~v~~~~~~~F 47 (1074)
-|.|+|++|+||||+|+.+++++.-.|
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~ 29 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGF 29 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCE
Confidence 389999999999999999999875443
No 339
>PRK06547 hypothetical protein; Provisional
Probab=94.53 E-value=0.038 Score=55.35 Aligned_cols=27 Identities=30% Similarity=0.298 Sum_probs=24.2
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHHHHh
Q 001458 17 SDVRMIGICGMGGLGKTTIARVVYDLI 43 (1074)
Q Consensus 17 ~~~~vv~I~G~gGiGKTtLA~~v~~~~ 43 (1074)
....+|+|.|+.|.||||+|+.+++..
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 457899999999999999999999864
No 340
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=94.52 E-value=0.077 Score=52.50 Aligned_cols=116 Identities=15% Similarity=0.054 Sum_probs=59.1
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHhcccccceEEEeechhhhccCChHHHHHHHHHHHhcccC-------Cc---cccccc
Q 001458 20 RMIGICGMGGLGKTTIARVVYDLISHEFEASGFLDNVREISSKGGLVSLQRQLLSQLLKLAD-------NS---IWNVFD 89 (1074)
Q Consensus 20 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~ll~~l~~~~~-------~~---~~~~~~ 89 (1074)
.+|-|++-.|.||||.|..++-+...+=-.++++.=.+.. ...+-....+.+.-.+..... .. .....+
T Consensus 6 Gli~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQFlKg~-~~~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~ 84 (173)
T TIGR00708 6 GIIIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQFIKGA-WPNGERAAFEPHGVEFQVMGTGFTWETQNREADTAIAKA 84 (173)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCC-cccChHHHHHhcCcEEEECCCCCeecCCCcHHHHHHHHH
Confidence 4778888899999999999987654443334332211111 011222222221000000000 00 011222
Q ss_pred hHHHHHhhhCCCe-EEEEEcCCCCh--------HHHHHHhcCCCCCCCCCEEEEEeCCh
Q 001458 90 GIDMLGSRLQRKK-VLLVIDDVVDV--------KQLQSLAGNREWFGSGSRIIITSRDE 139 (1074)
Q Consensus 90 ~~~~i~~~L~~kr-~LlVLDdv~~~--------~~l~~l~~~~~~~~~gs~IiiTTR~~ 139 (1074)
+.+..++.+...+ =|||||.+... +++-.+... ..++.-||+|-|+.
T Consensus 85 ~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~---rp~~~evVlTGR~~ 140 (173)
T TIGR00708 85 AWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQE---RPGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHh---CCCCCEEEEECCCC
Confidence 3444555565544 59999998532 233333332 34678999999984
No 341
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=94.52 E-value=0.036 Score=56.55 Aligned_cols=93 Identities=20% Similarity=0.231 Sum_probs=51.8
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHhcccccceEEEeechhhhccCChHHHHHHHHHHHhc-ccCCccccccchHHHHHhhh
Q 001458 20 RMIGICGMGGLGKTTIARVVYDLISHEFEASGFLDNVREISSKGGLVSLQRQLLSQLLK-LADNSIWNVFDGIDMLGSRL 98 (1074)
Q Consensus 20 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~ll~~l~~-~~~~~~~~~~~~~~~i~~~L 98 (1074)
..++|.|..|.||||+++.+...+... ...+.+.+..+...... ... ++.. .............+.++..+
T Consensus 26 ~~i~I~G~tGSGKTTll~aL~~~i~~~-~~~i~ied~~E~~~~~~------~~~-~~~~~~~~~~~~~~~~~~~~l~~~l 97 (186)
T cd01130 26 KNILISGGTGSGKTTLLNALLAFIPPD-ERIITIEDTAELQLPHP------NWV-RLVTRPGNVEGSGEVTMADLLRSAL 97 (186)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcCCC-CCEEEECCccccCCCCC------CEE-EEEEecCCCCCCCccCHHHHHHHHh
Confidence 579999999999999999998866533 23344443322211000 000 0000 00000111223345666677
Q ss_pred CCCeEEEEEcCCCChHHHHHHh
Q 001458 99 QRKKVLLVIDDVVDVKQLQSLA 120 (1074)
Q Consensus 99 ~~kr~LlVLDdv~~~~~l~~l~ 120 (1074)
+..+=.+|++.+.+.+.++.+.
T Consensus 98 R~~pd~i~igEir~~ea~~~~~ 119 (186)
T cd01130 98 RMRPDRIIVGEVRGGEALDLLQ 119 (186)
T ss_pred ccCCCEEEEEccCcHHHHHHHH
Confidence 7777888899988877665443
No 342
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=94.51 E-value=0.82 Score=50.61 Aligned_cols=48 Identities=17% Similarity=0.117 Sum_probs=32.4
Q ss_pred eecCCCCChHHHHHHHHHhhhcCCCCC-hhHHHHHHHHHHHhCCCchHH
Q 001458 150 VYKPHGLNYDEALQLFNMKAFKTYQPL-QECVQLSARIIRYAGGLPLAL 197 (1074)
Q Consensus 150 ~~~l~~L~~~ea~~Lf~~~a~~~~~~~-~~~~~~~~~i~~~~~GlPLal 197 (1074)
+++|++++.+|+..++..++-.+--.. ...+...+++.-..+|+|--+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHh
Confidence 679999999999999988764432221 223344555666668988544
No 343
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.50 E-value=0.0018 Score=66.76 Aligned_cols=79 Identities=18% Similarity=0.191 Sum_probs=42.7
Q ss_pred CCCCceEEecCccCCC-CccccCcCceEEEecCCCCCCCCCCCCCCCceEEEcCcCCccccc--ccccCCCCCcEEEccC
Q 001458 365 MTNLRLLKICNLQLPN-GLEYLSNRLRLLGWRGYPLKFLPSNLQMDKTIEIYMCYSRIGELW--KGIKHLDKLKVMILSH 441 (1074)
Q Consensus 365 l~~Lr~L~l~~~~l~~-~~~~l~~~L~~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~l~--~~~~~l~~L~~L~Ls~ 441 (1074)
+.+.+.|++.++.+.+ .+..-...|.+|.|+-|.++++.+....++|.+|+|+.|.|..+- .-++++++|+.|-|..
T Consensus 18 l~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~E 97 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDE 97 (388)
T ss_pred HHHhhhhcccCCCccHHHHHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhcc
Confidence 3344555555555544 222223456666666666666655556666666666666665553 2245555555555555
Q ss_pred CC
Q 001458 442 SE 443 (1074)
Q Consensus 442 ~~ 443 (1074)
|.
T Consensus 98 NP 99 (388)
T KOG2123|consen 98 NP 99 (388)
T ss_pred CC
Confidence 43
No 344
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=94.48 E-value=0.032 Score=60.39 Aligned_cols=24 Identities=25% Similarity=0.419 Sum_probs=20.8
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHh
Q 001458 20 RMIGICGMGGLGKTTIARVVYDLI 43 (1074)
Q Consensus 20 ~vv~I~G~gGiGKTtLA~~v~~~~ 43 (1074)
+-|.++|+.|+|||++++......
T Consensus 34 ~pvLl~G~~GtGKT~li~~~l~~l 57 (272)
T PF12775_consen 34 RPVLLVGPSGTGKTSLIQNFLSSL 57 (272)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHCS
T ss_pred CcEEEECCCCCchhHHHHhhhccC
Confidence 567999999999999999988654
No 345
>PTZ00088 adenylate kinase 1; Provisional
Probab=94.46 E-value=0.13 Score=54.00 Aligned_cols=22 Identities=32% Similarity=0.442 Sum_probs=20.7
Q ss_pred EEEEccCCCcHHHHHHHHHHHh
Q 001458 22 IGICGMGGLGKTTIARVVYDLI 43 (1074)
Q Consensus 22 v~I~G~gGiGKTtLA~~v~~~~ 43 (1074)
|.|.|++|+||||+|+.+++++
T Consensus 9 Ivl~G~PGsGK~T~a~~La~~~ 30 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSKKE 30 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8999999999999999999875
No 346
>COG5635 Predicted NTPase (NACHT family) [Signal transduction mechanisms]
Probab=94.46 E-value=0.29 Score=62.12 Aligned_cols=191 Identities=17% Similarity=0.131 Sum_probs=95.1
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhcc-c---ccceEEEe--echhhhccCChH-HHHHHHHHHHhcccCCccccccchHHH
Q 001458 21 MIGICGMGGLGKTTIARVVYDLISH-E---FEASGFLD--NVREISSKGGLV-SLQRQLLSQLLKLADNSIWNVFDGIDM 93 (1074)
Q Consensus 21 vv~I~G~gGiGKTtLA~~v~~~~~~-~---F~~~~~~~--~~~~~s~~~~~~-~l~~~ll~~l~~~~~~~~~~~~~~~~~ 93 (1074)
-+.|+|-+|.||||+.+.++-.... . =+..+|+. ..... ...... .+..-+...+ .... ...+....
T Consensus 224 ~~~Ilg~pGsGKTtfl~~lA~~~~~~~~~~~~vpi~~~l~~~~~~-~~~~~q~~~~~~l~~~~-~~~~----~~~~~~~~ 297 (824)
T COG5635 224 KLLILGAPGSGKTTFLQRLALWLAQRTLEPEDVPIFLLLNAFALA-RKFEKQLSLIDYLAEEL-FSQG----IAKQLIEA 297 (824)
T ss_pred heeeecCCCCCceehHHHHHHHhccCcCCcccCceeeechhHHHh-hhhHhhccHHHHHHHHH-hccC----CcchhhHH
Confidence 5899999999999999998853321 1 12223322 11111 111111 2222222221 1111 11111122
Q ss_pred HHhhhCCCeEEEEEcCCCChHH---------HHHHhcCCCCCCCCCEEEEEeCChhhhhhcCCCceecCCCCChHHHHHH
Q 001458 94 LGSRLQRKKVLLVIDDVVDVKQ---------LQSLAGNREWFGSGSRIIITSRDEHLLKTHGVDEVYKPHGLNYDEALQL 164 (1074)
Q Consensus 94 i~~~L~~kr~LlVLDdv~~~~~---------l~~l~~~~~~~~~gs~IiiTTR~~~v~~~~~~~~~~~l~~L~~~ea~~L 164 (1074)
..+.++..++++++|++|+... +..+.+. -+.+.||+|+|....-.....-..+++..+.++.-...
T Consensus 298 ~~e~l~~g~~llLlDGlDe~~~~~~~~~~~~i~~f~~~----~~~~~~iltcR~~~~~~~~~~f~~~ei~~~~~~~i~~~ 373 (824)
T COG5635 298 HQELLKTGKLLLLLDGLDELEPKNQRALIREINKFLQE----YPDAQVLLTCRPDTYKEEFKGFAVFEIYKFLDLQINQF 373 (824)
T ss_pred HHHHHhccchhhHhhccchhhhhhHHHHHHHHHHHhhh----ccCCeEEEEeccchhhhhhhhhhhccchhhhHHHHHHH
Confidence 2578888999999999988642 2333332 36899999999864433322233445555554433322
Q ss_pred HH--------HhhhcCCCCC-hhHH-HH---HHHHHHHhCCCchHHHHHHhhcC------CCCHHHHHHHHHHHhc
Q 001458 165 FN--------MKAFKTYQPL-QECV-QL---SARIIRYAGGLPLALEVLGSFLS------GRSVDEWRSTLERLEI 221 (1074)
Q Consensus 165 f~--------~~a~~~~~~~-~~~~-~~---~~~i~~~~~GlPLal~~~g~~L~------~~~~~~w~~~l~~l~~ 221 (1074)
.. ...++..... ..+. .+ ..+-++.....|++|.+.+..-. ....+-++.+++.+-.
T Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ik~l~~~p~~L~l~c~~~~~~~~lP~~~~~ly~~~~~~~~~ 449 (824)
T COG5635 374 ILYQWLDAFIEDWFGDSRLLAKKLLERLKLPENRRIKELALTPLLLALECLIWQAQGDLPESRAELYEQAVDALLG 449 (824)
T ss_pred HHHHHHHHHHHhhhcccchhhHHHHHHhcchhhHHHHHhccCHHHHHHHHHhhhHHhhCCCCcHHHHHHHHHHHHh
Confidence 21 1111111111 0111 11 12333444778999988874433 2455667777776543
No 347
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=94.44 E-value=0.23 Score=59.39 Aligned_cols=131 Identities=16% Similarity=0.174 Sum_probs=74.1
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHHHHhcccccceEEEeechhhhccCChHHHHHHHHHHHhcccCCccccccchH-HHHH
Q 001458 17 SDVRMIGICGMGGLGKTTIARVVYDLISHEFEASGFLDNVREISSKGGLVSLQRQLLSQLLKLADNSIWNVFDGI-DMLG 95 (1074)
Q Consensus 17 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~-~~i~ 95 (1074)
...+.|-++|++|.|||.||+++++.....|-.+..- .++.+..++ .+..+ ....
T Consensus 274 ~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~-----------------~l~sk~vGe-------sek~ir~~F~ 329 (494)
T COG0464 274 RPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGS-----------------ELLSKWVGE-------SEKNIRELFE 329 (494)
T ss_pred CCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCH-----------------HHhccccch-------HHHHHHHHHH
Confidence 3456899999999999999999999666555432211 111111110 01111 1122
Q ss_pred hhhCCCeEEEEEcCCCChHH-------------HHHHhcCCCCCCCCC--EEEEEeCChhhhhh-----cCCCceecCCC
Q 001458 96 SRLQRKKVLLVIDDVVDVKQ-------------LQSLAGNREWFGSGS--RIIITSRDEHLLKT-----HGVDEVYKPHG 155 (1074)
Q Consensus 96 ~~L~~kr~LlVLDdv~~~~~-------------l~~l~~~~~~~~~gs--~IiiTTR~~~v~~~-----~~~~~~~~l~~ 155 (1074)
...+.....|++|.++.... ...++...+.....+ .||-||-....... -.-+..+.+..
T Consensus 330 ~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~ 409 (494)
T COG0464 330 KARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPL 409 (494)
T ss_pred HHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCC
Confidence 22246789999999975421 222322222122333 34444433332221 12356889999
Q ss_pred CChHHHHHHHHHhhhc
Q 001458 156 LNYDEALQLFNMKAFK 171 (1074)
Q Consensus 156 L~~~ea~~Lf~~~a~~ 171 (1074)
-+.++..+.|..+.-.
T Consensus 410 pd~~~r~~i~~~~~~~ 425 (494)
T COG0464 410 PDLEERLEIFKIHLRD 425 (494)
T ss_pred CCHHHHHHHHHHHhcc
Confidence 9999999999988743
No 348
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=94.41 E-value=0.055 Score=59.50 Aligned_cols=35 Identities=29% Similarity=0.361 Sum_probs=28.0
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhcccccceEEE
Q 001458 19 VRMIGICGMGGLGKTTIARVVYDLISHEFEASGFL 53 (1074)
Q Consensus 19 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 53 (1074)
.|++.+.|.|||||||+|-+.+-........+.-+
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlv 36 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLV 36 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHcCCcEEEE
Confidence 58999999999999999999887666665544444
No 349
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=94.39 E-value=0.093 Score=56.57 Aligned_cols=26 Identities=31% Similarity=0.496 Sum_probs=20.4
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHhcc
Q 001458 20 RMIGICGMGGLGKTTIARVVYDLISH 45 (1074)
Q Consensus 20 ~vv~I~G~gGiGKTtLA~~v~~~~~~ 45 (1074)
..|.|.|.+|.||||+|+++...+..
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~ 27 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEE 27 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHh
Confidence 46899999999999999999986654
No 350
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.35 E-value=0.24 Score=56.10 Aligned_cols=25 Identities=24% Similarity=0.204 Sum_probs=22.2
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHh
Q 001458 19 VRMIGICGMGGLGKTTIARVVYDLI 43 (1074)
Q Consensus 19 ~~vv~I~G~gGiGKTtLA~~v~~~~ 43 (1074)
.++++++|++|+||||+|..++...
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998754
No 351
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=94.30 E-value=0.1 Score=58.11 Aligned_cols=49 Identities=18% Similarity=0.176 Sum_probs=33.8
Q ss_pred HHHHHhhcCCCCCeEEEEEEccCCCcHHHHHHHHHHHh--c----ccccceEEEe
Q 001458 6 EKLRFLMDSGSSDVRMIGICGMGGLGKTTIARVVYDLI--S----HEFEASGFLD 54 (1074)
Q Consensus 6 ~~l~~lL~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~--~----~~F~~~~~~~ 54 (1074)
+.|..+|..+-..-+++-|+|.+|+|||+|+..++-.. . ..-..++|++
T Consensus 113 ~~LD~lLgGGi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyId 167 (344)
T PLN03187 113 QALDELLGGGIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYID 167 (344)
T ss_pred HhHHhhcCCCCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEE
Confidence 45666676443445788999999999999999886322 1 1124567776
No 352
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=94.29 E-value=0.06 Score=50.88 Aligned_cols=40 Identities=18% Similarity=0.110 Sum_probs=28.2
Q ss_pred HHHHHHHhhcCCCCCeEEEEEEccCCCcHHHHHHHHHHHh
Q 001458 4 RCEKLRFLMDSGSSDVRMIGICGMGGLGKTTIARVVYDLI 43 (1074)
Q Consensus 4 ~~~~l~~lL~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 43 (1074)
+.+++-..+...-..-.+|.+.|.-|.||||+++.+++.+
T Consensus 7 ~t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 7 AMDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred HHHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3444444443322233589999999999999999999865
No 353
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=94.27 E-value=0.039 Score=55.73 Aligned_cols=26 Identities=31% Similarity=0.528 Sum_probs=23.0
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHhcc
Q 001458 20 RMIGICGMGGLGKTTIARVVYDLISH 45 (1074)
Q Consensus 20 ~vv~I~G~gGiGKTtLA~~v~~~~~~ 45 (1074)
++|.+.|++|.||||+|+++.+....
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~~ 28 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAE 28 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCC
Confidence 58999999999999999999887543
No 354
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=94.21 E-value=0.21 Score=51.40 Aligned_cols=21 Identities=29% Similarity=0.425 Sum_probs=19.6
Q ss_pred EEEEEccCCCcHHHHHHHHHH
Q 001458 21 MIGICGMGGLGKTTIARVVYD 41 (1074)
Q Consensus 21 vv~I~G~gGiGKTtLA~~v~~ 41 (1074)
+++|+|..|.|||||+++++-
T Consensus 24 ~~~i~G~nGsGKStll~al~~ 44 (197)
T cd03278 24 LTAIVGPNGSGKSNIIDAIRW 44 (197)
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 789999999999999999874
No 355
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=94.19 E-value=0.19 Score=49.13 Aligned_cols=23 Identities=26% Similarity=0.603 Sum_probs=20.5
Q ss_pred EEEEEccCCCcHHHHHHHHHHHh
Q 001458 21 MIGICGMGGLGKTTIARVVYDLI 43 (1074)
Q Consensus 21 vv~I~G~gGiGKTtLA~~v~~~~ 43 (1074)
+|.|.|++|+||||+|+.+.+..
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 47899999999999999998863
No 356
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.19 E-value=0.44 Score=58.29 Aligned_cols=25 Identities=24% Similarity=0.313 Sum_probs=22.6
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHh
Q 001458 19 VRMIGICGMGGLGKTTIARVVYDLI 43 (1074)
Q Consensus 19 ~~vv~I~G~gGiGKTtLA~~v~~~~ 43 (1074)
-++|+++|+.|+||||++.+++..+
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~ 209 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARC 209 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhH
Confidence 4799999999999999999998765
No 357
>CHL00095 clpC Clp protease ATP binding subunit
Probab=94.17 E-value=0.22 Score=63.13 Aligned_cols=27 Identities=19% Similarity=0.317 Sum_probs=22.6
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhcc
Q 001458 19 VRMIGICGMGGLGKTTIARVVYDLISH 45 (1074)
Q Consensus 19 ~~vv~I~G~gGiGKTtLA~~v~~~~~~ 45 (1074)
...+.++|+.|+|||+||+.+++.+-.
T Consensus 539 ~~~~lf~Gp~GvGKt~lA~~LA~~l~~ 565 (821)
T CHL00095 539 IASFLFSGPTGVGKTELTKALASYFFG 565 (821)
T ss_pred ceEEEEECCCCCcHHHHHHHHHHHhcC
Confidence 345678999999999999999987643
No 358
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=94.10 E-value=0.19 Score=62.83 Aligned_cols=26 Identities=27% Similarity=0.418 Sum_probs=22.7
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhc
Q 001458 19 VRMIGICGMGGLGKTTIARVVYDLIS 44 (1074)
Q Consensus 19 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 44 (1074)
..++.++|+.|+|||+||+.+++...
T Consensus 484 ~~~~lf~Gp~GvGKT~lA~~la~~l~ 509 (731)
T TIGR02639 484 VGSFLFTGPTGVGKTELAKQLAEALG 509 (731)
T ss_pred ceeEEEECCCCccHHHHHHHHHHHhc
Confidence 34678999999999999999998774
No 359
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=94.10 E-value=0.12 Score=51.92 Aligned_cols=34 Identities=32% Similarity=0.487 Sum_probs=25.4
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHhcccccceEEEe
Q 001458 20 RMIGICGMGGLGKTTIARVVYDLISHEFEASGFLD 54 (1074)
Q Consensus 20 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 54 (1074)
.+++|.|..|.|||||++.++.... ...+.+++.
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~~-~~~G~i~~~ 62 (173)
T cd03246 29 ESLAIIGPSGSGKSTLARLILGLLR-PTSGRVRLD 62 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhccC-CCCCeEEEC
Confidence 4799999999999999999986432 234444443
No 360
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=94.10 E-value=0.053 Score=54.83 Aligned_cols=25 Identities=36% Similarity=0.603 Sum_probs=22.4
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhcc
Q 001458 21 MIGICGMGGLGKTTIARVVYDLISH 45 (1074)
Q Consensus 21 vv~I~G~gGiGKTtLA~~v~~~~~~ 45 (1074)
+|+|.|..|.||||+|+.+...+..
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~ 25 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRV 25 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5899999999999999999987653
No 361
>PRK00889 adenylylsulfate kinase; Provisional
Probab=94.10 E-value=0.066 Score=54.05 Aligned_cols=27 Identities=33% Similarity=0.471 Sum_probs=23.8
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhcc
Q 001458 19 VRMIGICGMGGLGKTTIARVVYDLISH 45 (1074)
Q Consensus 19 ~~vv~I~G~gGiGKTtLA~~v~~~~~~ 45 (1074)
..+|+|.|++|.||||+|++++.....
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~l~~ 30 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEKLRE 30 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 468999999999999999999987643
No 362
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=94.09 E-value=0.28 Score=52.71 Aligned_cols=146 Identities=19% Similarity=0.165 Sum_probs=73.3
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHhcccccceEEEeechhhhc--cCChHHHHHHHHHHHhcccCCccccccchHHHHHhh
Q 001458 20 RMIGICGMGGLGKTTIARVVYDLISHEFEASGFLDNVREISS--KGGLVSLQRQLLSQLLKLADNSIWNVFDGIDMLGSR 97 (1074)
Q Consensus 20 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~--~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~ 97 (1074)
.-|.|+|+.|.|||+|......+ ...|.-.+.+......-. +-.+..+.+++-.++.. ......+..+....+-..
T Consensus 50 nsviiigprgsgkT~li~~~Ls~-~q~~~E~~l~v~Lng~~~~dk~al~~I~rql~~e~~~-~~k~~gsfte~l~~lL~~ 127 (408)
T KOG2228|consen 50 NSVIIIGPRGSGKTILIDTRLSD-IQENGENFLLVRLNGELQTDKIALKGITRQLALELNR-IVKSFGSFTENLSKLLEA 127 (408)
T ss_pred CceEEEccCCCCceEeeHHHHhh-HHhcCCeEEEEEECccchhhHHHHHHHHHHHHHHHhh-hheeecccchhHHHHHHH
Confidence 45789999999999998776654 233333333332211111 11223333343333211 122234455555666655
Q ss_pred hCC------CeEEEEEcCCCChH----H--HHHHhcC-CCCCCCCCEEEEEeCCh-------hhhhhcCCCceecCCCCC
Q 001458 98 LQR------KKVLLVIDDVVDVK----Q--LQSLAGN-REWFGSGSRIIITSRDE-------HLLKTHGVDEVYKPHGLN 157 (1074)
Q Consensus 98 L~~------kr~LlVLDdv~~~~----~--l~~l~~~-~~~~~~gs~IiiTTR~~-------~v~~~~~~~~~~~l~~L~ 157 (1074)
|+. -+|.+|+|.+|-.. | +-.+... .....|-+-|-+|||-. .|-.......++-++.++
T Consensus 128 L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttrld~lE~LEKRVKSRFshr~I~m~~~~~ 207 (408)
T KOG2228|consen 128 LKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTRLDILELLEKRVKSRFSHRVIFMLPSLP 207 (408)
T ss_pred HhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeeccccHHHHHHHHHHhhcccceeeccCCCC
Confidence 543 36999999887432 2 2222221 11234677788999962 222222223344455555
Q ss_pred hHHHHHHHHH
Q 001458 158 YDEALQLFNM 167 (1074)
Q Consensus 158 ~~ea~~Lf~~ 167 (1074)
-+|-..+++.
T Consensus 208 l~~yv~l~r~ 217 (408)
T KOG2228|consen 208 LGDYVDLYRK 217 (408)
T ss_pred hHHHHHHHHH
Confidence 5554444443
No 363
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=94.09 E-value=0.19 Score=56.02 Aligned_cols=49 Identities=20% Similarity=0.219 Sum_probs=34.2
Q ss_pred HHHHHhhcCCCCCeEEEEEEccCCCcHHHHHHHHHHHhcc------cccceEEEe
Q 001458 6 EKLRFLMDSGSSDVRMIGICGMGGLGKTTIARVVYDLISH------EFEASGFLD 54 (1074)
Q Consensus 6 ~~l~~lL~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~------~F~~~~~~~ 54 (1074)
..+..+|..+-..-+++-|+|.+|+||||+|.+++..... .=..++|++
T Consensus 82 ~~lD~~l~GGi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~ 136 (310)
T TIGR02236 82 KELDELLGGGIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYID 136 (310)
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEE
Confidence 3455666544344678899999999999999999865431 112677876
No 364
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=94.08 E-value=0.079 Score=58.80 Aligned_cols=108 Identities=20% Similarity=0.190 Sum_probs=61.1
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhcccccceEEEeechhhhccC-ChHHHHHHHHHHHhcccCCccccccchHHHHHhh
Q 001458 19 VRMIGICGMGGLGKTTIARVVYDLISHEFEASGFLDNVREISSKG-GLVSLQRQLLSQLLKLADNSIWNVFDGIDMLGSR 97 (1074)
Q Consensus 19 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~-~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~ 97 (1074)
-..++|.|..|.||||+++++...+.... ..+.+.+..+..-.. .... +...............+.+...
T Consensus 144 ~~~ili~G~tGsGKTTll~al~~~~~~~~-~iv~ied~~El~~~~~~~~~--------l~~~~~~~~~~~~~~~~~l~~~ 214 (308)
T TIGR02788 144 RKNIIISGGTGSGKTTFLKSLVDEIPKDE-RIITIEDTREIFLPHPNYVH--------LFYSKGGQGLAKVTPKDLLQSC 214 (308)
T ss_pred CCEEEEECCCCCCHHHHHHHHHccCCccc-cEEEEcCccccCCCCCCEEE--------EEecCCCCCcCccCHHHHHHHH
Confidence 36899999999999999999987664432 344454444432111 0000 0000000111112334566777
Q ss_pred hCCCeEEEEEcCCCChHHHHHHhcCCCCCCCCCE-EEEEeCCh
Q 001458 98 LQRKKVLLVIDDVVDVKQLQSLAGNREWFGSGSR-IIITSRDE 139 (1074)
Q Consensus 98 L~~kr~LlVLDdv~~~~~l~~l~~~~~~~~~gs~-IiiTTR~~ 139 (1074)
|+...=.+|+|.+-..+.++.+... . .|.. ++.|+-..
T Consensus 215 Lr~~pd~ii~gE~r~~e~~~~l~a~-~---~g~~~~i~T~Ha~ 253 (308)
T TIGR02788 215 LRMRPDRIILGELRGDEAFDFIRAV-N---TGHPGSITTLHAG 253 (308)
T ss_pred hcCCCCeEEEeccCCHHHHHHHHHH-h---cCCCeEEEEEeCC
Confidence 8888888999999987666544433 1 2332 45665543
No 365
>PTZ00035 Rad51 protein; Provisional
Probab=94.05 E-value=0.2 Score=56.13 Aligned_cols=38 Identities=18% Similarity=0.214 Sum_probs=29.7
Q ss_pred HHHHHHhhcCCCCCeEEEEEEccCCCcHHHHHHHHHHH
Q 001458 5 CEKLRFLMDSGSSDVRMIGICGMGGLGKTTIARVVYDL 42 (1074)
Q Consensus 5 ~~~l~~lL~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 42 (1074)
++.|..+|..+-..-.++.|+|..|.|||||+..++-.
T Consensus 104 ~~~LD~lLgGGi~~G~iteI~G~~GsGKT~l~~~l~~~ 141 (337)
T PTZ00035 104 STQLDKLLGGGIETGSITELFGEFRTGKTQLCHTLCVT 141 (337)
T ss_pred cHHHHHHhCCCCCCCeEEEEECCCCCchhHHHHHHHHH
Confidence 35567777654445688999999999999999988753
No 366
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=94.04 E-value=0.05 Score=52.46 Aligned_cols=24 Identities=29% Similarity=0.354 Sum_probs=20.5
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHh
Q 001458 20 RMIGICGMGGLGKTTIARVVYDLI 43 (1074)
Q Consensus 20 ~vv~I~G~gGiGKTtLA~~v~~~~ 43 (1074)
..|.|+|..|+||+++|+.++..-
T Consensus 22 ~pvli~GE~GtGK~~~A~~lh~~~ 45 (138)
T PF14532_consen 22 SPVLITGEPGTGKSLLARALHRYS 45 (138)
T ss_dssp S-EEEECCTTSSHHHHHHCCHHTT
T ss_pred CcEEEEcCCCCCHHHHHHHHHhhc
Confidence 457999999999999999998843
No 367
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=94.03 E-value=0.33 Score=48.02 Aligned_cols=54 Identities=11% Similarity=0.171 Sum_probs=34.4
Q ss_pred HHHhhhCCCeEEEEEcC----CCChHHHHHHhcCCCCCCCCCEEEEEeCChhhhhhcC
Q 001458 93 MLGSRLQRKKVLLVIDD----VVDVKQLQSLAGNREWFGSGSRIIITSRDEHLLKTHG 146 (1074)
Q Consensus 93 ~i~~~L~~kr~LlVLDd----v~~~~~l~~l~~~~~~~~~gs~IiiTTR~~~v~~~~~ 146 (1074)
.|-+.+-+++-+++=|. +|....|+-+.-.-.-...|..||++|-|.++.+.+.
T Consensus 147 aIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~ 204 (223)
T COG2884 147 AIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMR 204 (223)
T ss_pred HHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhcc
Confidence 34455567888888886 4444444433211111247999999999999887764
No 368
>PRK03846 adenylylsulfate kinase; Provisional
Probab=94.02 E-value=0.073 Score=54.97 Aligned_cols=38 Identities=21% Similarity=0.279 Sum_probs=29.1
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHHHHhcccccceEEEe
Q 001458 17 SDVRMIGICGMGGLGKTTIARVVYDLISHEFEASGFLD 54 (1074)
Q Consensus 17 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 54 (1074)
....+|+|.|++|.||||||+.+.......-...+++.
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld 59 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLD 59 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEc
Confidence 34679999999999999999999987644333345553
No 369
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=94.01 E-value=0.22 Score=57.28 Aligned_cols=26 Identities=27% Similarity=0.339 Sum_probs=23.2
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhc
Q 001458 19 VRMIGICGMGGLGKTTIARVVYDLIS 44 (1074)
Q Consensus 19 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 44 (1074)
..++.++|.+|+||||+|..++....
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~~l~ 124 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAYYLK 124 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 67999999999999999999987654
No 370
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=93.94 E-value=0.1 Score=56.83 Aligned_cols=116 Identities=20% Similarity=0.228 Sum_probs=65.9
Q ss_pred HHHHHhhcCCCCCeEEEEEEccCCCcHHHHHHHHHHHhcccccceEEEeechhhhccCChHHHHHHHHHHHhcccCCcc-
Q 001458 6 EKLRFLMDSGSSDVRMIGICGMGGLGKTTIARVVYDLISHEFEASGFLDNVREISSKGGLVSLQRQLLSQLLKLADNSI- 84 (1074)
Q Consensus 6 ~~l~~lL~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~ll~~l~~~~~~~~- 84 (1074)
+++.++|...-..-..|.|.|..|.||||+++++...+...-...+-+.+..|..-.. . .......
T Consensus 114 ~~~~~~l~~~v~~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~~l~~-~------------~~~~~~~~ 180 (270)
T PF00437_consen 114 EEIAEFLRSAVRGRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPELRLPG-P------------NQIQIQTR 180 (270)
T ss_dssp HHHHHHHHHCHHTTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S--SC-S------------SEEEEEEE
T ss_pred HHHHHHHhhccccceEEEEECCCccccchHHHHHhhhccccccceEEeccccceeecc-c------------ceEEEEee
Confidence 3444555432123478999999999999999999987766523334444433321110 0 0000000
Q ss_pred ccccchHHHHHhhhCCCeEEEEEcCCCChHHHHHHhcCCCCCCCCCEE-EEEeCC
Q 001458 85 WNVFDGIDMLGSRLQRKKVLLVIDDVVDVKQLQSLAGNREWFGSGSRI-IITSRD 138 (1074)
Q Consensus 85 ~~~~~~~~~i~~~L~~kr~LlVLDdv~~~~~l~~l~~~~~~~~~gs~I-iiTTR~ 138 (1074)
.+.....+.++..|+...=.+|++.+.+.+..+.+... ..|..+ +-|.-.
T Consensus 181 ~~~~~~~~~l~~~LR~~pD~iiigEiR~~e~~~~~~a~----~tGh~~~~tT~Ha 231 (270)
T PF00437_consen 181 RDEISYEDLLKSALRQDPDVIIIGEIRDPEAAEAIQAA----NTGHLGSLTTLHA 231 (270)
T ss_dssp TTTBSHHHHHHHHTTS--SEEEESCE-SCHHHHHHHHH----HTT-EEEEEEEE-
T ss_pred cCcccHHHHHHHHhcCCCCcccccccCCHhHHHHHHhh----ccCCceeeeeeec
Confidence 23445567788888888889999999988877764433 357777 444443
No 371
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=93.92 E-value=0.17 Score=59.98 Aligned_cols=51 Identities=18% Similarity=0.149 Sum_probs=40.5
Q ss_pred HHHHHHHhhcCCCCCeEEEEEEccCCCcHHHHHHHHHHHhcccccceEEEe
Q 001458 4 RCEKLRFLMDSGSSDVRMIGICGMGGLGKTTIARVVYDLISHEFEASGFLD 54 (1074)
Q Consensus 4 ~~~~l~~lL~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 54 (1074)
-+++|.++|..+-..-.++.|.|.+|+||||||.+++.....+-+.++|+.
T Consensus 248 Gi~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s 298 (484)
T TIGR02655 248 GVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFA 298 (484)
T ss_pred ChHhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 356788888765555678999999999999999999987666656677764
No 372
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=93.92 E-value=0.12 Score=53.05 Aligned_cols=31 Identities=29% Similarity=0.357 Sum_probs=25.6
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhcccccceEEEe
Q 001458 19 VRMIGICGMGGLGKTTIARVVYDLISHEFEASGFLD 54 (1074)
Q Consensus 19 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 54 (1074)
.+=|.++|++|.|||-+|++|+|+-. .||+.
T Consensus 211 pkgvllygppgtgktl~aravanrtd-----acfir 241 (435)
T KOG0729|consen 211 PKGVLLYGPPGTGKTLCARAVANRTD-----ACFIR 241 (435)
T ss_pred CCceEEeCCCCCchhHHHHHHhcccC-----ceEEe
Confidence 55688999999999999999999753 45555
No 373
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=93.90 E-value=0.042 Score=52.85 Aligned_cols=27 Identities=26% Similarity=0.562 Sum_probs=22.6
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhcccc
Q 001458 21 MIGICGMGGLGKTTIARVVYDLISHEF 47 (1074)
Q Consensus 21 vv~I~G~gGiGKTtLA~~v~~~~~~~F 47 (1074)
+|+|+|+.|+||||||+.++......|
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~~~~ 27 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFDPNF 27 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCCccc
Confidence 378999999999999999998654443
No 374
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=93.89 E-value=0.11 Score=54.45 Aligned_cols=40 Identities=23% Similarity=0.331 Sum_probs=28.2
Q ss_pred HHHHhhcCCCCCeEEEEEEccCCCcHHHHHHHHHHHhccc
Q 001458 7 KLRFLMDSGSSDVRMIGICGMGGLGKTTIARVVYDLISHE 46 (1074)
Q Consensus 7 ~l~~lL~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 46 (1074)
++.+.+.....+..+|||.|++|+|||||.-++...+..+
T Consensus 17 ~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~ 56 (266)
T PF03308_consen 17 ELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRER 56 (266)
T ss_dssp HHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhc
Confidence 3333333344567899999999999999999998866544
No 375
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=93.89 E-value=0.14 Score=56.69 Aligned_cols=36 Identities=22% Similarity=0.242 Sum_probs=28.7
Q ss_pred HHHHHhhcCCCCCeEEEEEEccCCCcHHHHHHHHHH
Q 001458 6 EKLRFLMDSGSSDVRMIGICGMGGLGKTTIARVVYD 41 (1074)
Q Consensus 6 ~~l~~lL~~~~~~~~vv~I~G~gGiGKTtLA~~v~~ 41 (1074)
+.|..+|..+-..-.++.|+|.+|+||||||..++.
T Consensus 83 ~~lD~ll~gGi~~g~i~~i~G~~g~GKT~l~~~~~~ 118 (316)
T TIGR02239 83 KELDKLLGGGIETGSITEIFGEFRTGKTQLCHTLAV 118 (316)
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCcCHHHHHHHH
Confidence 456666765444568899999999999999998875
No 376
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=93.88 E-value=0.17 Score=53.21 Aligned_cols=123 Identities=18% Similarity=0.204 Sum_probs=66.8
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHhcccccceEEEee--chhhhccCChHHHHHHHHHHHhccc------CCccccccchH
Q 001458 20 RMIGICGMGGLGKTTIARVVYDLISHEFEASGFLDN--VREISSKGGLVSLQRQLLSQLLKLA------DNSIWNVFDGI 91 (1074)
Q Consensus 20 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~--~~~~s~~~~~~~l~~~ll~~l~~~~------~~~~~~~~~~~ 91 (1074)
.++||+|..|.||||+|+.+..-..... +.+++.. +...+ .....+...+++..+.... .-+...-+...
T Consensus 40 e~~glVGESG~GKSTlgr~i~~L~~pt~-G~i~f~g~~i~~~~-~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQR 117 (268)
T COG4608 40 ETLGLVGESGCGKSTLGRLILGLEEPTS-GEILFEGKDITKLS-KEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQR 117 (268)
T ss_pred CEEEEEecCCCCHHHHHHHHHcCcCCCC-ceEEEcCcchhhcc-hhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhh
Confidence 4799999999999999999997554333 3333331 11111 1122333444444432111 11111111222
Q ss_pred HHHHhhhCCCeEEEEEcCCCCh------HHHHHHhcCCCCCCCCCEEEEEeCChhhhhhc
Q 001458 92 DMLGSRLQRKKVLLVIDDVVDV------KQLQSLAGNREWFGSGSRIIITSRDEHLLKTH 145 (1074)
Q Consensus 92 ~~i~~~L~~kr~LlVLDdv~~~------~~l~~l~~~~~~~~~gs~IiiTTR~~~v~~~~ 145 (1074)
-.|.+.|.-+.-++|.|..... .|.-.+...+. ...|-..+..|-|-.++..+
T Consensus 118 i~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq-~~~~lt~lFIsHDL~vv~~i 176 (268)
T COG4608 118 IGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQ-EELGLTYLFISHDLSVVRYI 176 (268)
T ss_pred HHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHH-HHhCCeEEEEEEEHHhhhhh
Confidence 3456777788999999996443 22222222211 12567788888887766654
No 377
>PRK13949 shikimate kinase; Provisional
Probab=93.87 E-value=0.049 Score=54.49 Aligned_cols=24 Identities=29% Similarity=0.401 Sum_probs=21.8
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhc
Q 001458 21 MIGICGMGGLGKTTIARVVYDLIS 44 (1074)
Q Consensus 21 vv~I~G~gGiGKTtLA~~v~~~~~ 44 (1074)
-|.|+|+.|.||||+|+.+++...
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELG 26 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 489999999999999999998764
No 378
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=93.87 E-value=0.022 Score=35.16 Aligned_cols=21 Identities=38% Similarity=0.578 Sum_probs=13.0
Q ss_pred CCCeEecCCCcCcccCccccc
Q 001458 754 SLKELYLSKNSFVSLPTSITH 774 (1074)
Q Consensus 754 ~L~~L~Ls~n~l~~lp~~i~~ 774 (1074)
+|++|+|++|+++.+|.++.+
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 356667777766666665443
No 379
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=93.86 E-value=0.54 Score=54.48 Aligned_cols=127 Identities=17% Similarity=0.267 Sum_probs=73.6
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHhcccccceEEEeechhhhccCChHHHHHHHHHHHhcccCCccccccchHHHHHhhh-
Q 001458 20 RMIGICGMGGLGKTTIARVVYDLISHEFEASGFLDNVREISSKGGLVSLQRQLLSQLLKLADNSIWNVFDGIDMLGSRL- 98 (1074)
Q Consensus 20 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L- 98 (1074)
.=|.+||++|.|||-||++|+|.-+-.| +. ++ + .+ ++....++. +..+..+-.+-
T Consensus 546 sGvLL~GPPGCGKTLlAKAVANEag~NF-----is-VK------G-PE----LlNkYVGES-------ErAVR~vFqRAR 601 (802)
T KOG0733|consen 546 SGVLLCGPPGCGKTLLAKAVANEAGANF-----IS-VK------G-PE----LLNKYVGES-------ERAVRQVFQRAR 601 (802)
T ss_pred CceEEeCCCCccHHHHHHHHhhhccCce-----Ee-ec------C-HH----HHHHHhhhH-------HHHHHHHHHHhh
Confidence 4478999999999999999999776655 22 11 1 12 222222111 11122222222
Q ss_pred CCCeEEEEEcCCCChH-------------HHHHHhcCCCCC--CCCCEEEEEeCChhhhh-h----cCCCceecCCCCCh
Q 001458 99 QRKKVLLVIDDVVDVK-------------QLQSLAGNREWF--GSGSRIIITSRDEHLLK-T----HGVDEVYKPHGLNY 158 (1074)
Q Consensus 99 ~~kr~LlVLDdv~~~~-------------~l~~l~~~~~~~--~~gs~IiiTTR~~~v~~-~----~~~~~~~~l~~L~~ 158 (1074)
..-.++|++|.+|... -+..|+..++-. ..|--||-.|.-.++.. . -..+...-|..-+.
T Consensus 602 ~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~ 681 (802)
T KOG0733|consen 602 ASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNA 681 (802)
T ss_pred cCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCH
Confidence 2467999999997531 244444444322 24555555554333322 1 12356778888889
Q ss_pred HHHHHHHHHhhh
Q 001458 159 DEALQLFNMKAF 170 (1074)
Q Consensus 159 ~ea~~Lf~~~a~ 170 (1074)
+|-.++++..+-
T Consensus 682 ~eR~~ILK~~tk 693 (802)
T KOG0733|consen 682 EERVAILKTITK 693 (802)
T ss_pred HHHHHHHHHHhc
Confidence 999999988774
No 380
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=93.86 E-value=0.042 Score=55.59 Aligned_cols=23 Identities=35% Similarity=0.748 Sum_probs=21.3
Q ss_pred EEEEEccCCCcHHHHHHHHHHHh
Q 001458 21 MIGICGMGGLGKTTIARVVYDLI 43 (1074)
Q Consensus 21 vv~I~G~gGiGKTtLA~~v~~~~ 43 (1074)
+|+|.|.+|.||||+|+.++...
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999875
No 381
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=93.85 E-value=0.24 Score=54.85 Aligned_cols=29 Identities=24% Similarity=0.297 Sum_probs=25.5
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHHHhccc
Q 001458 18 DVRMIGICGMGGLGKTTIARVVYDLISHE 46 (1074)
Q Consensus 18 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 46 (1074)
...+|+++|++|+||||++..++..++..
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~ 141 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQ 141 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc
Confidence 46899999999999999999999876654
No 382
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=93.80 E-value=0.41 Score=51.04 Aligned_cols=24 Identities=21% Similarity=0.372 Sum_probs=20.5
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhc
Q 001458 21 MIGICGMGGLGKTTIARVVYDLIS 44 (1074)
Q Consensus 21 vv~I~G~gGiGKTtLA~~v~~~~~ 44 (1074)
+..|+|+||+||||||..++-.+.
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va 26 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMA 26 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHh
Confidence 457899999999999999987543
No 383
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=93.80 E-value=0.043 Score=57.51 Aligned_cols=24 Identities=50% Similarity=0.754 Sum_probs=21.9
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhc
Q 001458 21 MIGICGMGGLGKTTIARVVYDLIS 44 (1074)
Q Consensus 21 vv~I~G~gGiGKTtLA~~v~~~~~ 44 (1074)
+|||.|..|.||||+|+.+...+.
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~ 24 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLS 24 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHh
Confidence 589999999999999999998764
No 384
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=93.76 E-value=0.12 Score=51.52 Aligned_cols=34 Identities=21% Similarity=0.364 Sum_probs=25.9
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHhcccccceEEEe
Q 001458 20 RMIGICGMGGLGKTTIARVVYDLISHEFEASGFLD 54 (1074)
Q Consensus 20 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 54 (1074)
.+++|.|..|.|||||.+.++-... ...+.+++.
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G~~~-~~~G~v~~~ 60 (163)
T cd03216 27 EVHALLGENGAGKSTLMKILSGLYK-PDSGEILVD 60 (163)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC-CCCeEEEEC
Confidence 4799999999999999999986442 234555554
No 385
>PRK06217 hypothetical protein; Validated
Probab=93.76 E-value=0.05 Score=55.38 Aligned_cols=24 Identities=29% Similarity=0.461 Sum_probs=21.7
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhc
Q 001458 21 MIGICGMGGLGKTTIARVVYDLIS 44 (1074)
Q Consensus 21 vv~I~G~gGiGKTtLA~~v~~~~~ 44 (1074)
.|.|.|++|.||||+|+++.++..
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~ 26 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLD 26 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 489999999999999999998753
No 386
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=93.75 E-value=0.14 Score=57.10 Aligned_cols=49 Identities=16% Similarity=0.201 Sum_probs=33.9
Q ss_pred HHHHHhhcCCCCCeEEEEEEccCCCcHHHHHHHHHHHhc------ccccceEEEe
Q 001458 6 EKLRFLMDSGSSDVRMIGICGMGGLGKTTIARVVYDLIS------HEFEASGFLD 54 (1074)
Q Consensus 6 ~~l~~lL~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~------~~F~~~~~~~ 54 (1074)
..|..+|..+-..-.++-|+|.+|+|||++|..++-... ..-..++|++
T Consensus 110 ~~LD~lL~GG~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyId 164 (342)
T PLN03186 110 RELDKILEGGIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYID 164 (342)
T ss_pred HHHHHhhcCCCcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEE
Confidence 456666664444567889999999999999998874321 1112577876
No 387
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=93.75 E-value=0.05 Score=53.03 Aligned_cols=24 Identities=33% Similarity=0.584 Sum_probs=21.6
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhc
Q 001458 21 MIGICGMGGLGKTTIARVVYDLIS 44 (1074)
Q Consensus 21 vv~I~G~gGiGKTtLA~~v~~~~~ 44 (1074)
+|.|.|+.|.||||+|+++..+..
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~ 24 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLG 24 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999998753
No 388
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=93.74 E-value=0.1 Score=51.89 Aligned_cols=29 Identities=21% Similarity=0.406 Sum_probs=25.2
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHHHHhcc
Q 001458 17 SDVRMIGICGMGGLGKTTIARVVYDLISH 45 (1074)
Q Consensus 17 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 45 (1074)
....+++|+|..|.|||||++.+......
T Consensus 4 ~~~~ii~ivG~sgsGKTTLi~~li~~l~~ 32 (173)
T PRK10751 4 TMIPLLAIAAWSGTGKTTLLKKLIPALCA 32 (173)
T ss_pred CCceEEEEECCCCChHHHHHHHHHHHHhh
Confidence 35679999999999999999999987654
No 389
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=93.72 E-value=0.055 Score=51.76 Aligned_cols=27 Identities=37% Similarity=0.604 Sum_probs=23.4
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhcccc
Q 001458 21 MIGICGMGGLGKTTIARVVYDLISHEF 47 (1074)
Q Consensus 21 vv~I~G~gGiGKTtLA~~v~~~~~~~F 47 (1074)
+|.|.|++|.||||+|+.+++...-.|
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~~ 28 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLKL 28 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCce
Confidence 689999999999999999999775443
No 390
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=93.71 E-value=0.044 Score=56.63 Aligned_cols=23 Identities=43% Similarity=0.735 Sum_probs=21.2
Q ss_pred EEEEEccCCCcHHHHHHHHHHHh
Q 001458 21 MIGICGMGGLGKTTIARVVYDLI 43 (1074)
Q Consensus 21 vv~I~G~gGiGKTtLA~~v~~~~ 43 (1074)
+|||.|..|.||||+|+.+...+
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998865
No 391
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=93.69 E-value=0.28 Score=53.93 Aligned_cols=88 Identities=20% Similarity=0.337 Sum_probs=55.4
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHhccc--ccceEEEeechhhhcc-CChHHHHHHHHHHHhcccCCccccccchHHHHHh
Q 001458 20 RMIGICGMGGLGKTTIARVVYDLISHE--FEASGFLDNVREISSK-GGLVSLQRQLLSQLLKLADNSIWNVFDGIDMLGS 96 (1074)
Q Consensus 20 ~vv~I~G~gGiGKTtLA~~v~~~~~~~--F~~~~~~~~~~~~s~~-~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~ 96 (1074)
+.|.|.|..|.||||+++++.+.+... -+.++-+.+..|..-. .+... +. ... ......+.++.
T Consensus 133 ~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~v~---------~~-~~~---~~~~~~~~l~~ 199 (299)
T TIGR02782 133 KNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNVVQ---------LR-TSD---DAISMTRLLKA 199 (299)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCEEE---------EE-ecC---CCCCHHHHHHH
Confidence 457899999999999999999877543 2344555555443211 01000 00 000 11144567788
Q ss_pred hhCCCeEEEEEcCCCChHHHHHHh
Q 001458 97 RLQRKKVLLVIDDVVDVKQLQSLA 120 (1074)
Q Consensus 97 ~L~~kr~LlVLDdv~~~~~l~~l~ 120 (1074)
.|+...=-||++.+...+.++.+.
T Consensus 200 aLR~~pD~iivGEiR~~ea~~~l~ 223 (299)
T TIGR02782 200 TLRLRPDRIIVGEVRGGEALDLLK 223 (299)
T ss_pred HhcCCCCEEEEeccCCHHHHHHHH
Confidence 888888888999998887766543
No 392
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=93.67 E-value=0.3 Score=54.54 Aligned_cols=36 Identities=22% Similarity=0.299 Sum_probs=25.4
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhc--ccccceEEEe
Q 001458 19 VRMIGICGMGGLGKTTIARVVYDLIS--HEFEASGFLD 54 (1074)
Q Consensus 19 ~~vv~I~G~gGiGKTtLA~~v~~~~~--~~F~~~~~~~ 54 (1074)
-++|.++|+.|+||||-..+++.++. ..=..+.++.
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiIT 240 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIIT 240 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEE
Confidence 68999999999999986666665543 3334445544
No 393
>PRK13948 shikimate kinase; Provisional
Probab=93.67 E-value=0.054 Score=54.65 Aligned_cols=29 Identities=21% Similarity=0.333 Sum_probs=24.8
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHHHhccc
Q 001458 18 DVRMIGICGMGGLGKTTIARVVYDLISHE 46 (1074)
Q Consensus 18 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 46 (1074)
..+.|.++||.|.||||+++.++++....
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~lg~~ 37 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRALMLH 37 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 35779999999999999999999877543
No 394
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.67 E-value=0.15 Score=59.19 Aligned_cols=27 Identities=26% Similarity=0.295 Sum_probs=23.4
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhcc
Q 001458 19 VRMIGICGMGGLGKTTIARVVYDLISH 45 (1074)
Q Consensus 19 ~~vv~I~G~gGiGKTtLA~~v~~~~~~ 45 (1074)
..+|+|+|.+|+||||++..++..+..
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la~ 376 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFAA 376 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 478999999999999999999876543
No 395
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=93.64 E-value=0.076 Score=52.92 Aligned_cols=24 Identities=38% Similarity=0.512 Sum_probs=20.6
Q ss_pred EEEEccCCCcHHHHHHHHHHHhcc
Q 001458 22 IGICGMGGLGKTTIARVVYDLISH 45 (1074)
Q Consensus 22 v~I~G~gGiGKTtLA~~v~~~~~~ 45 (1074)
|.|.|..|+|||||++.+++.++.
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~ 25 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKK 25 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhhc
Confidence 689999999999999999987743
No 396
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=93.64 E-value=0.36 Score=49.75 Aligned_cols=23 Identities=30% Similarity=0.167 Sum_probs=21.1
Q ss_pred EEEEEEccCCCcHHHHHHHHHHH
Q 001458 20 RMIGICGMGGLGKTTIARVVYDL 42 (1074)
Q Consensus 20 ~vv~I~G~gGiGKTtLA~~v~~~ 42 (1074)
++++|.|+.|.|||||++.+.-.
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~ 48 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVN 48 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHH
Confidence 79999999999999999999753
No 397
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=93.60 E-value=0.069 Score=58.88 Aligned_cols=34 Identities=26% Similarity=0.387 Sum_probs=25.8
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHhcccccceEEE
Q 001458 20 RMIGICGMGGLGKTTIARVVYDLISHEFEASGFL 53 (1074)
Q Consensus 20 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 53 (1074)
|++.+.|-||+||||+|-+.+-....+=..+.-+
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~~G~rtLlv 35 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALARRGKRTLLV 35 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEE
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhhCCCCeeEe
Confidence 6899999999999999998887665543444444
No 398
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=93.59 E-value=0.15 Score=55.20 Aligned_cols=49 Identities=22% Similarity=0.169 Sum_probs=40.6
Q ss_pred HHHHHhhcCCCCCeEEEEEEccCCCcHHHHHHHHHHHhcccccceEEEe
Q 001458 6 EKLRFLMDSGSSDVRMIGICGMGGLGKTTIARVVYDLISHEFEASGFLD 54 (1074)
Q Consensus 6 ~~l~~lL~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 54 (1074)
+.|.+++..+-..-+++.|+|.+|.|||++|.++..+.....+.++|+.
T Consensus 10 ~glD~~l~GG~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs 58 (260)
T COG0467 10 PGLDEILGGGLPRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVS 58 (260)
T ss_pred cchHHHhcCCCcCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEE
Confidence 3456667655556789999999999999999999998888888899976
No 399
>PRK13946 shikimate kinase; Provisional
Probab=93.58 E-value=0.057 Score=55.02 Aligned_cols=26 Identities=27% Similarity=0.539 Sum_probs=23.2
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhc
Q 001458 19 VRMIGICGMGGLGKTTIARVVYDLIS 44 (1074)
Q Consensus 19 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 44 (1074)
.+.|++.|+.|.||||+|+.++++..
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~Lg 35 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATMLG 35 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 35799999999999999999999874
No 400
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=93.56 E-value=0.053 Score=52.67 Aligned_cols=20 Identities=40% Similarity=0.775 Sum_probs=18.8
Q ss_pred EEEEEccCCCcHHHHHHHHH
Q 001458 21 MIGICGMGGLGKTTIARVVY 40 (1074)
Q Consensus 21 vv~I~G~gGiGKTtLA~~v~ 40 (1074)
.|+|.|.+|+||||+|+.+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999997
No 401
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=93.56 E-value=0.059 Score=54.63 Aligned_cols=25 Identities=28% Similarity=0.438 Sum_probs=22.2
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHhc
Q 001458 20 RMIGICGMGGLGKTTIARVVYDLIS 44 (1074)
Q Consensus 20 ~vv~I~G~gGiGKTtLA~~v~~~~~ 44 (1074)
++++|.|+.|+||||+|+.+.....
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999988654
No 402
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=93.56 E-value=0.061 Score=52.93 Aligned_cols=23 Identities=39% Similarity=0.612 Sum_probs=21.0
Q ss_pred EEEEccCCCcHHHHHHHHHHHhc
Q 001458 22 IGICGMGGLGKTTIARVVYDLIS 44 (1074)
Q Consensus 22 v~I~G~gGiGKTtLA~~v~~~~~ 44 (1074)
|.|+|++|.||||+|+.++....
T Consensus 2 i~l~G~~GsGKstla~~la~~l~ 24 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALG 24 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhC
Confidence 78999999999999999998763
No 403
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=93.52 E-value=0.21 Score=56.30 Aligned_cols=106 Identities=16% Similarity=0.227 Sum_probs=62.2
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHhcccccceEEE-eechhhhccCChHHHHHHHHHHHhcccCCccccccchHHHHHhhh
Q 001458 20 RMIGICGMGGLGKTTIARVVYDLISHEFEASGFL-DNVREISSKGGLVSLQRQLLSQLLKLADNSIWNVFDGIDMLGSRL 98 (1074)
Q Consensus 20 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~-~~~~~~s~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L 98 (1074)
.+|.|.|+.|.||||+++++.+.+.......++. .+..+...... ..+ ....... .+.....+.++..|
T Consensus 123 g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~~~-----~~~----i~q~evg-~~~~~~~~~l~~~l 192 (343)
T TIGR01420 123 GLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHRNK-----RSL----INQREVG-LDTLSFANALRAAL 192 (343)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhccCc-----cce----EEccccC-CCCcCHHHHHHHhh
Confidence 5799999999999999999998776555444443 32212110000 000 0000111 11223456678888
Q ss_pred CCCeEEEEEcCCCChHHHHHHhcCCCCCCCCCEEEEEeCC
Q 001458 99 QRKKVLLVIDDVVDVKQLQSLAGNREWFGSGSRIIITSRD 138 (1074)
Q Consensus 99 ~~kr~LlVLDdv~~~~~l~~l~~~~~~~~~gs~IiiTTR~ 138 (1074)
+...=.|++|.+.+.+.+....... ..|..|+.|+-.
T Consensus 193 r~~pd~i~vgEird~~~~~~~l~aa---~tGh~v~~T~Ha 229 (343)
T TIGR01420 193 REDPDVILIGEMRDLETVELALTAA---ETGHLVFGTLHT 229 (343)
T ss_pred ccCCCEEEEeCCCCHHHHHHHHHHH---HcCCcEEEEEcC
Confidence 8899999999998877665433321 245555555544
No 404
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=93.45 E-value=0.076 Score=54.04 Aligned_cols=35 Identities=26% Similarity=0.301 Sum_probs=29.8
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhcccccceEEE
Q 001458 19 VRMIGICGMGGLGKTTIARVVYDLISHEFEASGFL 53 (1074)
Q Consensus 19 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 53 (1074)
.|+|.|+|+.|+|||||++++.......|...+..
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~ 36 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVSH 36 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcccccccceee
Confidence 47899999999999999999999988888654443
No 405
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=93.45 E-value=0.28 Score=46.43 Aligned_cols=13 Identities=38% Similarity=0.508 Sum_probs=4.9
Q ss_pred ccCCCCCCEEEec
Q 001458 587 VSNLKCLRSLKLS 599 (1074)
Q Consensus 587 l~~l~~L~~L~Ls 599 (1074)
+..+++|+.+.+.
T Consensus 54 F~~~~~l~~i~~~ 66 (129)
T PF13306_consen 54 FSNCKSLESITFP 66 (129)
T ss_dssp TTT-TT-EEEEET
T ss_pred eeccccccccccc
Confidence 3444444444443
No 406
>PRK13975 thymidylate kinase; Provisional
Probab=93.44 E-value=0.071 Score=54.97 Aligned_cols=26 Identities=31% Similarity=0.509 Sum_probs=23.7
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHhcc
Q 001458 20 RMIGICGMGGLGKTTIARVVYDLISH 45 (1074)
Q Consensus 20 ~vv~I~G~gGiGKTtLA~~v~~~~~~ 45 (1074)
.+|+|.|+.|+||||+|+.+++++..
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~~ 28 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLNA 28 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 57999999999999999999998764
No 407
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=93.44 E-value=0.14 Score=55.14 Aligned_cols=37 Identities=14% Similarity=0.170 Sum_probs=30.4
Q ss_pred CCCeEEEEEEccCCCcHHHHHHHHHHHhcccccceEE
Q 001458 16 SSDVRMIGICGMGGLGKTTIARVVYDLISHEFEASGF 52 (1074)
Q Consensus 16 ~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~ 52 (1074)
..++.+|.|.|..|.|||||+..+.+.+.......+.
T Consensus 101 ~~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~~~VI 137 (290)
T PRK10463 101 ARKQLVLNLVSSPGSGKTTLLTETLMRLKDSVPCAVI 137 (290)
T ss_pred hcCCeEEEEECCCCCCHHHHHHHHHHHhccCCCEEEE
Confidence 4568999999999999999999999988766544333
No 408
>PRK13768 GTPase; Provisional
Probab=93.42 E-value=0.094 Score=56.32 Aligned_cols=35 Identities=20% Similarity=0.333 Sum_probs=26.2
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhcccccceEEE
Q 001458 19 VRMIGICGMGGLGKTTIARVVYDLISHEFEASGFL 53 (1074)
Q Consensus 19 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 53 (1074)
..+++|+|+||+||||+|..+....+.+-..++.+
T Consensus 2 ~~~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i 36 (253)
T PRK13768 2 MYIVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIV 36 (253)
T ss_pred cEEEEEECCCCccHHHHHHHHHHHHHhcCCceEEE
Confidence 36789999999999999999987665443333333
No 409
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=93.41 E-value=0.28 Score=46.46 Aligned_cols=83 Identities=13% Similarity=0.140 Sum_probs=36.5
Q ss_pred cChHHHhCCCCCceEEecCc--cCCCCccccCcCceEEEecCCCCCCCCCCC--CCCCceEEEcCcCCccccc-ccccCC
Q 001458 357 ASAKAFSKMTNLRLLKICNL--QLPNGLEYLSNRLRLLGWRGYPLKFLPSNL--QMDKTIEIYMCYSRIGELW-KGIKHL 431 (1074)
Q Consensus 357 ~~~~~f~~l~~Lr~L~l~~~--~l~~~~~~l~~~L~~L~l~~~~l~~lp~~~--~~~~L~~L~L~~~~i~~l~-~~~~~l 431 (1074)
+...+|.++++|+.+.+.+. .+....+.....|+.+.+.++ +..++... ....++.+.+.. .+..++ ..+..+
T Consensus 3 i~~~~F~~~~~l~~i~~~~~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~ 80 (129)
T PF13306_consen 3 IGNNAFYNCSNLESITFPNTIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNC 80 (129)
T ss_dssp E-TTTTTT-TT--EEEETST--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-
T ss_pred ECHHHHhCCCCCCEEEECCCeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccc
Confidence 55677888888888887642 123333444445666666553 55554433 333455555543 333333 234445
Q ss_pred CCCcEEEccC
Q 001458 432 DKLKVMILSH 441 (1074)
Q Consensus 432 ~~L~~L~Ls~ 441 (1074)
++|+.+++..
T Consensus 81 ~~l~~i~~~~ 90 (129)
T PF13306_consen 81 TNLKNIDIPS 90 (129)
T ss_dssp TTECEEEETT
T ss_pred ccccccccCc
Confidence 5555555543
No 410
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=93.41 E-value=0.4 Score=54.85 Aligned_cols=28 Identities=25% Similarity=0.307 Sum_probs=24.2
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhccc
Q 001458 19 VRMIGICGMGGLGKTTIARVVYDLISHE 46 (1074)
Q Consensus 19 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 46 (1074)
..+|.++|..|+||||+|..++..++.+
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~ 127 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRK 127 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 6899999999999999999998765443
No 411
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=93.40 E-value=0.27 Score=51.21 Aligned_cols=23 Identities=22% Similarity=0.203 Sum_probs=21.0
Q ss_pred eEEEEEEccCCCcHHHHHHHHHH
Q 001458 19 VRMIGICGMGGLGKTTIARVVYD 41 (1074)
Q Consensus 19 ~~vv~I~G~gGiGKTtLA~~v~~ 41 (1074)
.+++.|+|+.|.||||+.+.+..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 48899999999999999999874
No 412
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=93.39 E-value=0.15 Score=57.53 Aligned_cols=102 Identities=20% Similarity=0.322 Sum_probs=57.6
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHHHhcccccceEEEeechhhhccCChHHHHHHHHHHHhcccCCccccccchHHHHHhh
Q 001458 18 DVRMIGICGMGGLGKTTIARVVYDLISHEFEASGFLDNVREISSKGGLVSLQRQLLSQLLKLADNSIWNVFDGIDMLGSR 97 (1074)
Q Consensus 18 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~ 97 (1074)
.++=+-|||.-|.|||-|.-.+|+.+...=...+.++ +...++-+.+.... ...+.+..+-+.
T Consensus 61 ~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh------------~Fm~~vh~~l~~~~-----~~~~~l~~va~~ 123 (362)
T PF03969_consen 61 PPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFH------------EFMLDVHSRLHQLR-----GQDDPLPQVADE 123 (362)
T ss_pred CCceEEEECCCCCchhHHHHHHHHhCCcccccccccc------------HHHHHHHHHHHHHh-----CCCccHHHHHHH
Confidence 3677899999999999999999986543211111111 11222222221111 223345666677
Q ss_pred hCCCeEEEEEcCC--CChHH---HHHHhcCCCCCCCCCEEEEEeCCh
Q 001458 98 LQRKKVLLVIDDV--VDVKQ---LQSLAGNREWFGSGSRIIITSRDE 139 (1074)
Q Consensus 98 L~~kr~LlVLDdv--~~~~~---l~~l~~~~~~~~~gs~IiiTTR~~ 139 (1074)
+.++..||.+|.+ .+..+ +..+...+ +..|. |+|+|.+.
T Consensus 124 l~~~~~lLcfDEF~V~DiaDAmil~rLf~~l--~~~gv-vlVaTSN~ 167 (362)
T PF03969_consen 124 LAKESRLLCFDEFQVTDIADAMILKRLFEAL--FKRGV-VLVATSNR 167 (362)
T ss_pred HHhcCCEEEEeeeeccchhHHHHHHHHHHHH--HHCCC-EEEecCCC
Confidence 7788889999995 44443 44444332 24555 55555543
No 413
>PRK14526 adenylate kinase; Provisional
Probab=93.33 E-value=0.23 Score=51.58 Aligned_cols=22 Identities=32% Similarity=0.480 Sum_probs=19.9
Q ss_pred EEEEccCCCcHHHHHHHHHHHh
Q 001458 22 IGICGMGGLGKTTIARVVYDLI 43 (1074)
Q Consensus 22 v~I~G~gGiGKTtLA~~v~~~~ 43 (1074)
|+|.|++|.||||+|+.++..+
T Consensus 3 i~l~G~pGsGKsT~a~~La~~~ 24 (211)
T PRK14526 3 LVFLGPPGSGKGTIAKILSNEL 24 (211)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6799999999999999998764
No 414
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=93.33 E-value=0.094 Score=50.49 Aligned_cols=35 Identities=17% Similarity=0.327 Sum_probs=25.9
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHhccc-ccceEEEe
Q 001458 20 RMIGICGMGGLGKTTIARVVYDLISHE-FEASGFLD 54 (1074)
Q Consensus 20 ~vv~I~G~gGiGKTtLA~~v~~~~~~~-F~~~~~~~ 54 (1074)
++|.|+|..|+|||||++.+.+....+ +...++.+
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~ik~ 36 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRRGYRVAVIKH 36 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHcCCceEEEEE
Confidence 479999999999999999999977644 44333443
No 415
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=93.33 E-value=0.071 Score=53.58 Aligned_cols=25 Identities=36% Similarity=0.458 Sum_probs=22.2
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHhc
Q 001458 20 RMIGICGMGGLGKTTIARVVYDLIS 44 (1074)
Q Consensus 20 ~vv~I~G~gGiGKTtLA~~v~~~~~ 44 (1074)
+.|+|+|+.|.||||+|+.+++...
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~l~ 29 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHHcC
Confidence 4589999999999999999998754
No 416
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.32 E-value=0.22 Score=50.75 Aligned_cols=60 Identities=17% Similarity=0.168 Sum_probs=38.6
Q ss_pred HHHHHhhhCCCeEEEEEcCCCChHHHHHHh---cCCC-CCCCCCEEEEEeCChhhhhhcCCCce
Q 001458 91 IDMLGSRLQRKKVLLVIDDVVDVKQLQSLA---GNRE-WFGSGSRIIITSRDEHLLKTHGVDEV 150 (1074)
Q Consensus 91 ~~~i~~~L~~kr~LlVLDdv~~~~~l~~l~---~~~~-~~~~gs~IiiTTR~~~v~~~~~~~~~ 150 (1074)
...|.+.+--++-+.|||..|+--+++++. .... ...+|+.++|.|-.++++.....+..
T Consensus 152 R~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~v 215 (251)
T COG0396 152 RNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKV 215 (251)
T ss_pred HHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEE
Confidence 445555566678899999998754443332 1111 12468888888888888888765544
No 417
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=93.29 E-value=0.24 Score=61.65 Aligned_cols=180 Identities=16% Similarity=0.158 Sum_probs=85.5
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHH-hcccccceEEEee--------chhhhccCChHHHHHHHHHHHhcccCCccccccc
Q 001458 19 VRMIGICGMGGLGKTTIARVVYDL-ISHEFEASGFLDN--------VREISSKGGLVSLQRQLLSQLLKLADNSIWNVFD 89 (1074)
Q Consensus 19 ~~vv~I~G~gGiGKTtLA~~v~~~-~~~~F~~~~~~~~--------~~~~s~~~~~~~l~~~ll~~l~~~~~~~~~~~~~ 89 (1074)
.++++|.|+.|.||||+.+.+.-. +-. ..++++.. +..+....+..+ .+... ......
T Consensus 322 ~~~liItGpNg~GKSTlLK~i~~~~l~a--q~G~~Vpa~~~~~~~~~d~i~~~i~~~~---si~~~--------LStfS~ 388 (771)
T TIGR01069 322 KRVLAITGPNTGGKTVTLKTLGLLALMF--QSGIPIPANEHSEIPYFEEIFADIGDEQ---SIEQN--------LSTFSG 388 (771)
T ss_pred ceEEEEECCCCCCchHHHHHHHHHHHHH--HhCCCccCCccccccchhheeeecChHh---HHhhh--------hhHHHH
Confidence 478999999999999999998753 110 01111110 000000001111 11111 011111
Q ss_pred hHHHHHhhhC--CCeEEEEEcCCCCh---HHHHHH----hcCCCCCCCCCEEEEEeCChhhhhhcCCC---ceecCCCCC
Q 001458 90 GIDMLGSRLQ--RKKVLLVIDDVVDV---KQLQSL----AGNREWFGSGSRIIITSRDEHLLKTHGVD---EVYKPHGLN 157 (1074)
Q Consensus 90 ~~~~i~~~L~--~kr~LlVLDdv~~~---~~l~~l----~~~~~~~~~gs~IiiTTR~~~v~~~~~~~---~~~~l~~L~ 157 (1074)
....+...+. ..+-|+++|..... ..-..+ ...+ ...|+.+|+||-+..+....... ..+.+. ++
T Consensus 389 ~m~~~~~il~~~~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l--~~~g~~viitTH~~eL~~~~~~~~~v~~~~~~-~d 465 (771)
T TIGR01069 389 HMKNISAILSKTTENSLVLFDELGAGTDPDEGSALAISILEYL--LKQNAQVLITTHYKELKALMYNNEGVENASVL-FD 465 (771)
T ss_pred HHHHHHHHHHhcCCCcEEEecCCCCCCCHHHHHHHHHHHHHHH--HhcCCEEEEECChHHHHHHhcCCCCeEEeEEE-Ec
Confidence 2222333333 47899999998542 222222 2221 13588999999997764332111 111111 11
Q ss_pred hHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCCchHHHHHHhhcCCCCHHHHHHHHHHHhc
Q 001458 158 YDEALQLFNMKAFKTYQPLQECVQLSARIIRYAGGLPLALEVLGSFLSGRSVDEWRSTLERLEI 221 (1074)
Q Consensus 158 ~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~g~~L~~~~~~~w~~~l~~l~~ 221 (1074)
.+ .+. |..+...+ .+.. .-|-+|++++ |+|-.+.--|..+.+....+++..++++..
T Consensus 466 ~~-~l~-p~Ykl~~G-~~g~---S~a~~iA~~~-Glp~~ii~~A~~~~~~~~~~~~~li~~L~~ 522 (771)
T TIGR01069 466 EE-TLS-PTYKLLKG-IPGE---SYAFEIAQRY-GIPHFIIEQAKTFYGEFKEEINVLIEKLSA 522 (771)
T ss_pred CC-CCc-eEEEECCC-CCCC---cHHHHHHHHh-CcCHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 11 000 11111111 1111 2355666665 788888888877766555566666666543
No 418
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=93.27 E-value=0.32 Score=60.24 Aligned_cols=26 Identities=23% Similarity=0.327 Sum_probs=22.9
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhc
Q 001458 19 VRMIGICGMGGLGKTTIARVVYDLIS 44 (1074)
Q Consensus 19 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 44 (1074)
...+.++|+.|+|||++|+.++....
T Consensus 488 ~~~~Lf~GP~GvGKT~lAk~LA~~l~ 513 (758)
T PRK11034 488 VGSFLFAGPTGVGKTEVTVQLSKALG 513 (758)
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhC
Confidence 45789999999999999999998774
No 419
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=93.21 E-value=0.075 Score=52.20 Aligned_cols=27 Identities=33% Similarity=0.502 Sum_probs=23.7
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhcccc
Q 001458 21 MIGICGMGGLGKTTIARVVYDLISHEF 47 (1074)
Q Consensus 21 vv~I~G~gGiGKTtLA~~v~~~~~~~F 47 (1074)
-|.++||.|.||||+.+++++...-.|
T Consensus 4 ~IvLiG~mGaGKSTIGr~LAk~L~~~F 30 (172)
T COG0703 4 NIVLIGFMGAGKSTIGRALAKALNLPF 30 (172)
T ss_pred cEEEEcCCCCCHhHHHHHHHHHcCCCc
Confidence 488999999999999999998776555
No 420
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=93.20 E-value=1.5 Score=48.15 Aligned_cols=169 Identities=11% Similarity=0.018 Sum_probs=91.3
Q ss_pred HHHHHHHhhcCCCCCeEEEEEEccCCCcHHHHHHHHHHHhccc---------cc-ceEEEeechhhhccCChHHHHHHHH
Q 001458 4 RCEKLRFLMDSGSSDVRMIGICGMGGLGKTTIARVVYDLISHE---------FE-ASGFLDNVREISSKGGLVSLQRQLL 73 (1074)
Q Consensus 4 ~~~~l~~lL~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~---------F~-~~~~~~~~~~~s~~~~~~~l~~~ll 73 (1074)
-++.++..+..+ .-.++.-++|..|+||+++|+++.+.+-.. .+ ...+++ ..+ ....+.++. ++.
T Consensus 4 ~~~~l~~~i~~~-~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d-~~g--~~i~vd~Ir-~l~ 78 (299)
T PRK07132 4 WIKFLDNSATQN-KISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFD-IFD--KDLSKSEFL-SAI 78 (299)
T ss_pred HHHHHHHHHHhC-CCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEec-cCC--CcCCHHHHH-HHH
Confidence 345555555422 225777899999999999999999876211 11 111111 000 111111111 122
Q ss_pred HHHhcccCCccccccchHHHHHhhhCCCeEEEEEcCCCChHH--HHHHhcCCCCCCCCCEEEEEe-CChhhhhh-cCCCc
Q 001458 74 SQLLKLADNSIWNVFDGIDMLGSRLQRKKVLLVIDDVVDVKQ--LQSLAGNREWFGSGSRIIITS-RDEHLLKT-HGVDE 149 (1074)
Q Consensus 74 ~~l~~~~~~~~~~~~~~~~~i~~~L~~kr~LlVLDdv~~~~~--l~~l~~~~~~~~~gs~IiiTT-R~~~v~~~-~~~~~ 149 (1074)
..+... ..-.+++=++|+|+++...+ ...+...+..-++++.+|++| ..+.+... .....
T Consensus 79 ~~~~~~----------------~~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~ 142 (299)
T PRK07132 79 NKLYFS----------------SFVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQ 142 (299)
T ss_pred HHhccC----------------CcccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeE
Confidence 221000 00014667788899877643 444444333334677777655 44555544 33456
Q ss_pred eecCCCCChHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCCchHHHHHH
Q 001458 150 VYKPHGLNYDEALQLFNMKAFKTYQPLQECVQLSARIIRYAGGLPLALEVLG 201 (1074)
Q Consensus 150 ~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~g 201 (1074)
.+++.++++++..+.+.... ..+ +.+..++..++|.=-|+..+.
T Consensus 143 ~~~f~~l~~~~l~~~l~~~~-----~~~---~~a~~~a~~~~~~~~a~~~~~ 186 (299)
T PRK07132 143 VFNVKEPDQQKILAKLLSKN-----KEK---EYNWFYAYIFSNFEQAEKYIN 186 (299)
T ss_pred EEECCCCCHHHHHHHHHHcC-----CCh---hHHHHHHHHcCCHHHHHHHHh
Confidence 89999999999988776541 111 235556666666334555543
No 421
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=93.18 E-value=0.091 Score=54.41 Aligned_cols=32 Identities=25% Similarity=0.318 Sum_probs=26.7
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHHHHhccccc
Q 001458 17 SDVRMIGICGMGGLGKTTIARVVYDLISHEFE 48 (1074)
Q Consensus 17 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~ 48 (1074)
+...+|.++||+|.||||..+.++..+..++.
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ 48 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSHLHAKKT 48 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHHHhhccC
Confidence 34668899999999999999999987766654
No 422
>CHL00206 ycf2 Ycf2; Provisional
Probab=93.18 E-value=1.1 Score=59.19 Aligned_cols=25 Identities=20% Similarity=0.215 Sum_probs=22.1
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHh
Q 001458 19 VRMIGICGMGGLGKTTIARVVYDLI 43 (1074)
Q Consensus 19 ~~vv~I~G~gGiGKTtLA~~v~~~~ 43 (1074)
.+=|.++|++|.|||.||+++|...
T Consensus 1630 PKGILLiGPPGTGKTlLAKALA~es 1654 (2281)
T CHL00206 1630 SRGILVIGSIGTGRSYLVKYLATNS 1654 (2281)
T ss_pred CCceEEECCCCCCHHHHHHHHHHhc
Confidence 4568899999999999999999854
No 423
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=93.17 E-value=0.16 Score=53.83 Aligned_cols=50 Identities=18% Similarity=0.170 Sum_probs=36.9
Q ss_pred HHHHHHhhcCCCCCeEEEEEEccCCCcHHHHHHHHHHHhcccccceEEEe
Q 001458 5 CEKLRFLMDSGSSDVRMIGICGMGGLGKTTIARVVYDLISHEFEASGFLD 54 (1074)
Q Consensus 5 ~~~l~~lL~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 54 (1074)
++.|.+++..+=..-.++.|.|.+|.||||+|.+++.....+-+.++|+.
T Consensus 6 i~~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is 55 (229)
T TIGR03881 6 VEGLDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVT 55 (229)
T ss_pred hhhHHHhhcCCCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEE
Confidence 56677777544445578999999999999999987754434455677775
No 424
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=93.17 E-value=0.28 Score=57.76 Aligned_cols=125 Identities=14% Similarity=0.190 Sum_probs=73.1
Q ss_pred hHHHHHHHhhcC--CC-CCeEEEEEEccCCCcHHHHHHHHHHHhc--------ccccceEEEeechhhhccCChHHHHHH
Q 001458 3 SRCEKLRFLMDS--GS-SDVRMIGICGMGGLGKTTIARVVYDLIS--------HEFEASGFLDNVREISSKGGLVSLQRQ 71 (1074)
Q Consensus 3 ~~~~~l~~lL~~--~~-~~~~vv~I~G~gGiGKTtLA~~v~~~~~--------~~F~~~~~~~~~~~~s~~~~~~~l~~~ 71 (1074)
.+.++|...+.. .. ..-..+-|.|.+|.|||..+..|.+.+. ..|++ +.+... .-....++...
T Consensus 403 ~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~y-veINgm----~l~~~~~~Y~~ 477 (767)
T KOG1514|consen 403 NEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDY-VEINGL----RLASPREIYEK 477 (767)
T ss_pred HHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccE-EEEcce----eecCHHHHHHH
Confidence 455666666543 12 3345899999999999999999998442 23443 223322 12345666777
Q ss_pred HHHHHhcccCCccccccchHHHHHhhhC-----CCeEEEEEcCCCChHH--HHHHhcCCCCC-CCCCEEEEEe
Q 001458 72 LLSQLLKLADNSIWNVFDGIDMLGSRLQ-----RKKVLLVIDDVVDVKQ--LQSLAGNREWF-GSGSRIIITS 136 (1074)
Q Consensus 72 ll~~l~~~~~~~~~~~~~~~~~i~~~L~-----~kr~LlVLDdv~~~~~--l~~l~~~~~~~-~~gs~IiiTT 136 (1074)
|+.++-... ..+...++.+..+.. .+..+|++|++|.+-. -+-+-..++|- .++|+++|.+
T Consensus 478 I~~~lsg~~----~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~ 546 (767)
T KOG1514|consen 478 IWEALSGER----VTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIA 546 (767)
T ss_pred HHHhcccCc----ccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEE
Confidence 777654332 233444555555554 3568888999876532 12222233443 4788877654
No 425
>PRK01184 hypothetical protein; Provisional
Probab=93.17 E-value=0.23 Score=50.52 Aligned_cols=22 Identities=32% Similarity=0.665 Sum_probs=18.4
Q ss_pred EEEEEEccCCCcHHHHHHHHHHH
Q 001458 20 RMIGICGMGGLGKTTIARVVYDL 42 (1074)
Q Consensus 20 ~vv~I~G~gGiGKTtLA~~v~~~ 42 (1074)
.+|+|.|+.|.||||+|+ ++.+
T Consensus 2 ~~i~l~G~~GsGKsT~a~-~~~~ 23 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSK-IARE 23 (184)
T ss_pred cEEEEECCCCCCHHHHHH-HHHH
Confidence 479999999999999997 4443
No 426
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=93.12 E-value=0.085 Score=54.07 Aligned_cols=25 Identities=28% Similarity=0.333 Sum_probs=22.7
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHh
Q 001458 19 VRMIGICGMGGLGKTTIARVVYDLI 43 (1074)
Q Consensus 19 ~~vv~I~G~gGiGKTtLA~~v~~~~ 43 (1074)
..+|.|.|++|+||||+|+.++++.
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999999874
No 427
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.10 E-value=0.19 Score=49.72 Aligned_cols=114 Identities=20% Similarity=0.252 Sum_probs=58.7
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHhcccccceEEEeechhhhccCChHHHHHHHHHHHhcccCCccccccchHHHHHhhhC
Q 001458 20 RMIGICGMGGLGKTTIARVVYDLISHEFEASGFLDNVREISSKGGLVSLQRQLLSQLLKLADNSIWNVFDGIDMLGSRLQ 99 (1074)
Q Consensus 20 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~ 99 (1074)
.+++|.|..|.|||||++.+...+. ...+.+++.... ... ..... ....+.-... ...-+...-.+-..+.
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~~-~~~G~i~~~~~~-~~~-~~~~~----~~~~i~~~~q--lS~G~~~r~~l~~~l~ 96 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLLK-PTSGEILIDGKD-IAK-LPLEE----LRRRIGYVPQ--LSGGQRQRVALARALL 96 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC-CCccEEEECCEE-ccc-CCHHH----HHhceEEEee--CCHHHHHHHHHHHHHh
Confidence 5899999999999999999987543 345556654221 100 00011 1111100000 0001111222444555
Q ss_pred CCeEEEEEcCCCCh---H---HHHHHhcCCCCCCCCCEEEEEeCChhhhhh
Q 001458 100 RKKVLLVIDDVVDV---K---QLQSLAGNREWFGSGSRIIITSRDEHLLKT 144 (1074)
Q Consensus 100 ~kr~LlVLDdv~~~---~---~l~~l~~~~~~~~~gs~IiiTTR~~~v~~~ 144 (1074)
...=++++|+.... . .+..+..... ..+..||++|-+...+..
T Consensus 97 ~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~--~~~~tii~~sh~~~~~~~ 145 (157)
T cd00267 97 LNPDLLLLDEPTSGLDPASRERLLELLRELA--EEGRTVIIVTHDPELAEL 145 (157)
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHH--HCCCEEEEEeCCHHHHHH
Confidence 56788999997532 2 2222222211 235778999888765554
No 428
>PRK05439 pantothenate kinase; Provisional
Probab=93.07 E-value=0.15 Score=55.93 Aligned_cols=28 Identities=39% Similarity=0.535 Sum_probs=24.6
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHHHHhc
Q 001458 17 SDVRMIGICGMGGLGKTTIARVVYDLIS 44 (1074)
Q Consensus 17 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 44 (1074)
....+|||.|.+|+||||+|+.+.....
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l~ 111 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALLS 111 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4578999999999999999999988654
No 429
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=93.06 E-value=0.09 Score=57.50 Aligned_cols=27 Identities=33% Similarity=0.589 Sum_probs=22.8
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHhccc
Q 001458 20 RMIGICGMGGLGKTTIARVVYDLISHE 46 (1074)
Q Consensus 20 ~vv~I~G~gGiGKTtLA~~v~~~~~~~ 46 (1074)
|+|+|+|-||+||||+|..++.....+
T Consensus 1 ~~ia~~gKGGVGKTT~a~nLA~~La~~ 27 (275)
T TIGR01287 1 RQIAIYGKGGIGKSTTTQNIAAALAEM 27 (275)
T ss_pred CeeEEeCCCcCcHHHHHHHHHHHHHHC
Confidence 578999999999999999998765543
No 430
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=93.04 E-value=0.1 Score=51.57 Aligned_cols=25 Identities=24% Similarity=0.403 Sum_probs=22.7
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHh
Q 001458 19 VRMIGICGMGGLGKTTIARVVYDLI 43 (1074)
Q Consensus 19 ~~vv~I~G~gGiGKTtLA~~v~~~~ 43 (1074)
-.++.|.|+.|+|||||+++++++.
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 3688999999999999999999876
No 431
>PRK14738 gmk guanylate kinase; Provisional
Probab=93.03 E-value=0.069 Score=55.44 Aligned_cols=28 Identities=18% Similarity=0.318 Sum_probs=24.0
Q ss_pred CCCCeEEEEEEccCCCcHHHHHHHHHHH
Q 001458 15 GSSDVRMIGICGMGGLGKTTIARVVYDL 42 (1074)
Q Consensus 15 ~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 42 (1074)
+....++|.|.|++|+|||||++.+.+.
T Consensus 9 ~~~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 9 KPAKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 4456789999999999999999999754
No 432
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=92.98 E-value=0.15 Score=55.40 Aligned_cols=28 Identities=36% Similarity=0.483 Sum_probs=23.8
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHHHHhc
Q 001458 17 SDVRMIGICGMGGLGKTTIARVVYDLIS 44 (1074)
Q Consensus 17 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 44 (1074)
+...+|||.|..|+||||+|+.+...+.
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~ 87 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALLS 87 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4578999999999999999998876554
No 433
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=92.95 E-value=0.2 Score=55.63 Aligned_cols=23 Identities=30% Similarity=0.589 Sum_probs=20.7
Q ss_pred EEEEccCCCcHHHHHHHHHHHhc
Q 001458 22 IGICGMGGLGKTTIARVVYDLIS 44 (1074)
Q Consensus 22 v~I~G~gGiGKTtLA~~v~~~~~ 44 (1074)
+++.|+.|.||||+|+.+.+.+.
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l~ 24 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATLR 24 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHHH
Confidence 57899999999999999998764
No 434
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=92.93 E-value=0.072 Score=54.08 Aligned_cols=24 Identities=29% Similarity=0.498 Sum_probs=21.7
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHh
Q 001458 20 RMIGICGMGGLGKTTIARVVYDLI 43 (1074)
Q Consensus 20 ~vv~I~G~gGiGKTtLA~~v~~~~ 43 (1074)
++|+|+|+.|.||||||+.++...
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 579999999999999999999854
No 435
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=92.93 E-value=0.24 Score=54.41 Aligned_cols=98 Identities=18% Similarity=0.136 Sum_probs=52.6
Q ss_pred HHHHhhcC-CCCCeEEEEEEccCCCcHHHHHHHHHHHhcccccceEEEeechhhhccCChHHHHHHHHHHHhcccC----
Q 001458 7 KLRFLMDS-GSSDVRMIGICGMGGLGKTTIARVVYDLISHEFEASGFLDNVREISSKGGLVSLQRQLLSQLLKLAD---- 81 (1074)
Q Consensus 7 ~l~~lL~~-~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~ll~~l~~~~~---- 81 (1074)
.|...|.. +-..-+++-|+|..|+||||||..+.......-..++|++.- ...+ ...+..+.-..+
T Consensus 40 ~LD~aLg~GG~p~G~ivEi~G~~ssGKttLaL~~ia~~q~~g~~~a~ID~e----~~ld-----~~~a~~lGvdl~rllv 110 (322)
T PF00154_consen 40 ALDYALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKQGGICAFIDAE----HALD-----PEYAESLGVDLDRLLV 110 (322)
T ss_dssp HHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTT-EEEEEESS----S--------HHHHHHTT--GGGEEE
T ss_pred ccchhhccCccccCceEEEeCCCCCchhhhHHHHHHhhhcccceeEEecCc----ccch-----hhHHHhcCccccceEE
Confidence 34445542 212357899999999999999999988776666667888721 1111 122222211110
Q ss_pred CccccccchHHHHHhhhCC-CeEEEEEcCCCCh
Q 001458 82 NSIWNVFDGIDMLGSRLQR-KKVLLVIDDVVDV 113 (1074)
Q Consensus 82 ~~~~~~~~~~~~i~~~L~~-kr~LlVLDdv~~~ 113 (1074)
..+...++....+...++. .--++|+|-|...
T Consensus 111 ~~P~~~E~al~~~e~lirsg~~~lVVvDSv~al 143 (322)
T PF00154_consen 111 VQPDTGEQALWIAEQLIRSGAVDLVVVDSVAAL 143 (322)
T ss_dssp EE-SSHHHHHHHHHHHHHTTSESEEEEE-CTT-
T ss_pred ecCCcHHHHHHHHHHHhhcccccEEEEecCccc
Confidence 0112233444444444443 4468999998654
No 436
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.93 E-value=0.52 Score=49.63 Aligned_cols=28 Identities=29% Similarity=0.287 Sum_probs=24.0
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhccc
Q 001458 19 VRMIGICGMGGLGKTTIARVVYDLISHE 46 (1074)
Q Consensus 19 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 46 (1074)
-|-|.++|++|.||+.||++|+......
T Consensus 166 wrgiLLyGPPGTGKSYLAKAVATEAnST 193 (439)
T KOG0739|consen 166 WRGILLYGPPGTGKSYLAKAVATEANST 193 (439)
T ss_pred ceeEEEeCCCCCcHHHHHHHHHhhcCCc
Confidence 5789999999999999999999765433
No 437
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=92.90 E-value=0.17 Score=53.73 Aligned_cols=47 Identities=21% Similarity=0.307 Sum_probs=34.7
Q ss_pred HHHHhhcCCCCCeEEEEEEccCCCcHHHHHHHHHHHhcccccceEEE
Q 001458 7 KLRFLMDSGSSDVRMIGICGMGGLGKTTIARVVYDLISHEFEASGFL 53 (1074)
Q Consensus 7 ~l~~lL~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 53 (1074)
++...+.....+..+|||.|.+|+||+||.-++-..+..+=..+..+
T Consensus 39 ~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVl 85 (323)
T COG1703 39 ELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVL 85 (323)
T ss_pred HHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEE
Confidence 45555555566788999999999999999999987665544444433
No 438
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=92.88 E-value=0.35 Score=50.43 Aligned_cols=22 Identities=27% Similarity=0.321 Sum_probs=20.1
Q ss_pred EEEEccCCCcHHHHHHHHHHHh
Q 001458 22 IGICGMGGLGKTTIARVVYDLI 43 (1074)
Q Consensus 22 v~I~G~gGiGKTtLA~~v~~~~ 43 (1074)
|.|.|++|.||||+|+.++.++
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~ 23 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKY 23 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 6899999999999999998765
No 439
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=92.85 E-value=0.16 Score=51.88 Aligned_cols=26 Identities=42% Similarity=0.654 Sum_probs=21.7
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhccc
Q 001458 21 MIGICGMGGLGKTTIARVVYDLISHE 46 (1074)
Q Consensus 21 vv~I~G~gGiGKTtLA~~v~~~~~~~ 46 (1074)
.|+|+|-||+||||+|..++.++..+
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~ 27 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSK 27 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhc
Confidence 58999999999999999977665444
No 440
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=92.84 E-value=0.08 Score=54.68 Aligned_cols=23 Identities=26% Similarity=0.163 Sum_probs=20.8
Q ss_pred eEEEEEEccCCCcHHHHHHHHHH
Q 001458 19 VRMIGICGMGGLGKTTIARVVYD 41 (1074)
Q Consensus 19 ~~vv~I~G~gGiGKTtLA~~v~~ 41 (1074)
.++++|.|+.|.||||+.+.+.-
T Consensus 29 ~~~~~l~G~n~~GKstll~~i~~ 51 (204)
T cd03282 29 SRFHIITGPNMSGKSTYLKQIAL 51 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 47899999999999999998874
No 441
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=92.78 E-value=0.22 Score=57.02 Aligned_cols=23 Identities=30% Similarity=0.492 Sum_probs=20.3
Q ss_pred EEEEEEccCCCcHHHHHHHHHHH
Q 001458 20 RMIGICGMGGLGKTTIARVVYDL 42 (1074)
Q Consensus 20 ~vv~I~G~gGiGKTtLA~~v~~~ 42 (1074)
..++|+|..|.|||||++.+...
T Consensus 166 qri~I~G~SGsGKTTLL~~Ia~l 188 (450)
T PRK06002 166 QRIGIFAGSGVGKSTLLAMLARA 188 (450)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999988753
No 442
>PLN02318 phosphoribulokinase/uridine kinase
Probab=92.78 E-value=0.12 Score=60.44 Aligned_cols=32 Identities=22% Similarity=0.549 Sum_probs=26.5
Q ss_pred hcCCCCCeEEEEEEccCCCcHHHHHHHHHHHh
Q 001458 12 MDSGSSDVRMIGICGMGGLGKTTIARVVYDLI 43 (1074)
Q Consensus 12 L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 43 (1074)
+....+++.+|||.|..|.||||||+.+...+
T Consensus 58 L~~~~~~riIIGIaGpSGSGKTTLAk~LaglL 89 (656)
T PLN02318 58 LAQKNDGIILVGVAGPSGAGKTVFTEKVLNFM 89 (656)
T ss_pred HHhcCCCeEEEEEECCCCCcHHHHHHHHHhhC
Confidence 33344568899999999999999999998764
No 443
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=92.77 E-value=0.093 Score=52.75 Aligned_cols=24 Identities=25% Similarity=0.380 Sum_probs=21.6
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhc
Q 001458 21 MIGICGMGGLGKTTIARVVYDLIS 44 (1074)
Q Consensus 21 vv~I~G~gGiGKTtLA~~v~~~~~ 44 (1074)
.|.|+|+.|.||||+|+.++++..
T Consensus 4 ~i~~~G~~GsGKst~~~~la~~lg 27 (171)
T PRK03731 4 PLFLVGARGCGKTTVGMALAQALG 27 (171)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 578899999999999999998764
No 444
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=92.77 E-value=0.074 Score=52.99 Aligned_cols=22 Identities=32% Similarity=0.508 Sum_probs=20.0
Q ss_pred EEEEccCCCcHHHHHHHHHHHh
Q 001458 22 IGICGMGGLGKTTIARVVYDLI 43 (1074)
Q Consensus 22 v~I~G~gGiGKTtLA~~v~~~~ 43 (1074)
|+|+|+.|.||||+|+++.+..
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 4789999999999999999876
No 445
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=92.76 E-value=0.12 Score=50.88 Aligned_cols=26 Identities=23% Similarity=0.341 Sum_probs=23.2
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhccc
Q 001458 21 MIGICGMGGLGKTTIARVVYDLISHE 46 (1074)
Q Consensus 21 vv~I~G~gGiGKTtLA~~v~~~~~~~ 46 (1074)
|++|+|+.|+||||++.++...++.+
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~~ 26 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKAR 26 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 58999999999999999999977654
No 446
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=92.75 E-value=0.24 Score=51.24 Aligned_cols=23 Identities=26% Similarity=0.495 Sum_probs=21.1
Q ss_pred EEEEEEccCCCcHHHHHHHHHHH
Q 001458 20 RMIGICGMGGLGKTTIARVVYDL 42 (1074)
Q Consensus 20 ~vv~I~G~gGiGKTtLA~~v~~~ 42 (1074)
.+++|.|..|.|||||++.++..
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 27 EVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999864
No 447
>PRK14529 adenylate kinase; Provisional
Probab=92.72 E-value=0.41 Score=49.89 Aligned_cols=89 Identities=22% Similarity=0.219 Sum_probs=47.3
Q ss_pred EEEEccCCCcHHHHHHHHHHHhcccc-cceEEEeechh-hhccCChHHHHHHHHHHHhcccCCccccccchHHHHHhhhC
Q 001458 22 IGICGMGGLGKTTIARVVYDLISHEF-EASGFLDNVRE-ISSKGGLVSLQRQLLSQLLKLADNSIWNVFDGIDMLGSRLQ 99 (1074)
Q Consensus 22 v~I~G~gGiGKTtLA~~v~~~~~~~F-~~~~~~~~~~~-~s~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~ 99 (1074)
|.|.|++|.||||+|+.++.++.-.+ ...-.+ ++ +.....+....++++.+ ......+-....+.+++.
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~~~~~is~gdll---r~~i~~~t~lg~~i~~~i~~------G~lvpdei~~~lv~~~l~ 73 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKYDLAHIESGAIF---REHIGGGTELGKKAKEYIDR------GDLVPDDITIPMILETLK 73 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCcccchhh---hhhccCCChHHHHHHHHHhc------cCcchHHHHHHHHHHHHh
Confidence 78899999999999999998764322 111111 11 11112222223333322 122222233556666664
Q ss_pred CC-eEEEEEcCCC-ChHHHHHH
Q 001458 100 RK-KVLLVIDDVV-DVKQLQSL 119 (1074)
Q Consensus 100 ~k-r~LlVLDdv~-~~~~l~~l 119 (1074)
+. .-=+|||++- +.+|.+.|
T Consensus 74 ~~~~~g~iLDGfPRt~~Qa~~l 95 (223)
T PRK14529 74 QDGKNGWLLDGFPRNKVQAEKL 95 (223)
T ss_pred ccCCCcEEEeCCCCCHHHHHHH
Confidence 32 3458999984 45555444
No 448
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=92.71 E-value=0.22 Score=57.39 Aligned_cols=93 Identities=19% Similarity=0.177 Sum_probs=49.5
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHhcccccceEEEeechhhhccCChHHHHHHHHHHHhcccCCc---ccccc--------
Q 001458 20 RMIGICGMGGLGKTTIARVVYDLISHEFEASGFLDNVREISSKGGLVSLQRQLLSQLLKLADNS---IWNVF-------- 88 (1074)
Q Consensus 20 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~ll~~l~~~~~~~---~~~~~-------- 88 (1074)
+-++|.|.+|+|||||+..++.........++.+.-+.+- ...+.++.++++..-......- ..+..
T Consensus 145 QR~gIfa~~GvGKt~Ll~~i~~~~~~~~~~v~V~~liGER--~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a~ 222 (463)
T PRK09280 145 GKIGLFGGAGVGKTVLIQELINNIAKEHGGYSVFAGVGER--TREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRVA 222 (463)
T ss_pred CEEEeecCCCCChhHHHHHHHHHHHhcCCCEEEEEEeccC--cHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHH
Confidence 3589999999999999999987654433333333333322 2234445555443211000000 00100
Q ss_pred chHHHHHhhh---CCCeEEEEEcCCCChH
Q 001458 89 DGIDMLGSRL---QRKKVLLVIDDVVDVK 114 (1074)
Q Consensus 89 ~~~~~i~~~L---~~kr~LlVLDdv~~~~ 114 (1074)
...-.+-+.+ +++++||++|++....
T Consensus 223 ~~a~tiAEyfrd~~G~~VLll~DslTR~A 251 (463)
T PRK09280 223 LTGLTMAEYFRDVEGQDVLLFIDNIFRFT 251 (463)
T ss_pred HHHHHHHHHHHHhcCCceEEEecchHHHH
Confidence 0011223333 6799999999996654
No 449
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=92.71 E-value=0.095 Score=49.29 Aligned_cols=23 Identities=30% Similarity=0.388 Sum_probs=20.4
Q ss_pred EEEEEccCCCcHHHHHHHHHHHh
Q 001458 21 MIGICGMGGLGKTTIARVVYDLI 43 (1074)
Q Consensus 21 vv~I~G~gGiGKTtLA~~v~~~~ 43 (1074)
=|.|.|.+|+||||+|.+++...
T Consensus 9 NILvtGTPG~GKstl~~~lae~~ 31 (176)
T KOG3347|consen 9 NILVTGTPGTGKSTLAERLAEKT 31 (176)
T ss_pred CEEEeCCCCCCchhHHHHHHHHh
Confidence 47899999999999999999643
No 450
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=92.70 E-value=0.56 Score=49.96 Aligned_cols=131 Identities=18% Similarity=0.222 Sum_probs=78.2
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhcccccceEEEeechhhhccCChHHHHHHHHHHHhcccCCccccccchHHHHHhhh
Q 001458 19 VRMIGICGMGGLGKTTIARVVYDLISHEFEASGFLDNVREISSKGGLVSLQRQLLSQLLKLADNSIWNVFDGIDMLGSRL 98 (1074)
Q Consensus 19 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L 98 (1074)
-+.+.|+|+.|+|||+-++.+++... ..|+. +.+..+....++..+....+.... ..+.+....+..++
T Consensus 94 g~l~~vyg~~g~gKt~a~~~y~~s~p-----~~~l~---~~~p~~~a~~~i~~i~~~~~~~~~---~~~~d~~~~~~~~l 162 (297)
T COG2842 94 GSLVVVYGYAGLGKTQAAKNYAPSNP-----NALLI---EADPSYTALVLILIICAAAFGATD---GTINDLTERLMIRL 162 (297)
T ss_pred CceEEEeccccchhHHHHHhhcccCc-----cceee---cCChhhHHHHHHHHHHHHHhcccc---hhHHHHHHHHHHHH
Confidence 45899999999999999999987542 22332 134445555566666555544333 34556677777888
Q ss_pred CCCeEEEEEcCCCCh--HHHHHHhcCCCCCCCCCEEEEEeCChhhhhhcCCCceecCCCCChHHHHHHHHHhhhcC
Q 001458 99 QRKKVLLVIDDVVDV--KQLQSLAGNREWFGSGSRIIITSRDEHLLKTHGVDEVYKPHGLNYDEALQLFNMKAFKT 172 (1074)
Q Consensus 99 ~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~gs~IiiTTR~~~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~ 172 (1074)
++..-+++.|+.+.. +.++.+....+ ..|.-++..--++ ....-.=+..+..++|.+..++.
T Consensus 163 ~~~~~~iivDEA~~L~~~ale~lr~i~d--~~Gi~~vLvG~pr----------L~~~l~~~~~~~~rl~srv~v~~ 226 (297)
T COG2842 163 RDTVRLIIVDEADRLPYRALEELRRIHD--KTGIGVVLVGMPR----------LFKVLRRPEDELSRLYSRVRVGK 226 (297)
T ss_pred ccCcceeeeehhhccChHHHHHHHHHHH--hhCceEEEecChH----------HHhccccchHHHHHHHHHhhhHh
Confidence 888899999998764 34555544433 2333333222221 11111223456777777777653
No 451
>PRK14530 adenylate kinase; Provisional
Probab=92.67 E-value=0.095 Score=54.93 Aligned_cols=23 Identities=26% Similarity=0.254 Sum_probs=21.2
Q ss_pred EEEEEccCCCcHHHHHHHHHHHh
Q 001458 21 MIGICGMGGLGKTTIARVVYDLI 43 (1074)
Q Consensus 21 vv~I~G~gGiGKTtLA~~v~~~~ 43 (1074)
.|+|.|++|.||||+|+.++.++
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999876
No 452
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=92.65 E-value=0.41 Score=48.88 Aligned_cols=22 Identities=23% Similarity=0.249 Sum_probs=19.5
Q ss_pred EEEEEEccCCCcHHHHHHHHHH
Q 001458 20 RMIGICGMGGLGKTTIARVVYD 41 (1074)
Q Consensus 20 ~vv~I~G~gGiGKTtLA~~v~~ 41 (1074)
--|+|.|.+|+|||||++.+.+
T Consensus 7 ~KivviG~~~vGKTsll~~~~~ 28 (189)
T cd04121 7 LKFLLVGDSDVGKGEILASLQD 28 (189)
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 4478999999999999999876
No 453
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=92.65 E-value=0.15 Score=47.20 Aligned_cols=32 Identities=34% Similarity=0.488 Sum_probs=24.9
Q ss_pred EEEEccCCCcHHHHHHHHHHHhcccccceEEE
Q 001458 22 IGICGMGGLGKTTIARVVYDLISHEFEASGFL 53 (1074)
Q Consensus 22 v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 53 (1074)
|++.|.||+||||+|..++..+..+-..+..+
T Consensus 2 i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~i 33 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARYLAEKGKPVLAI 33 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 78999999999999999998775543334333
No 454
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=92.63 E-value=0.16 Score=52.55 Aligned_cols=25 Identities=32% Similarity=0.505 Sum_probs=22.0
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHhc
Q 001458 20 RMIGICGMGGLGKTTIARVVYDLIS 44 (1074)
Q Consensus 20 ~vv~I~G~gGiGKTtLA~~v~~~~~ 44 (1074)
.-++|.|.+|+|||+|+..+.+...
T Consensus 16 qr~~I~g~~g~GKt~Ll~~i~~~~~ 40 (215)
T PF00006_consen 16 QRIGIFGGAGVGKTVLLQEIANNQD 40 (215)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHCT
T ss_pred CEEEEEcCcccccchhhHHHHhccc
Confidence 3479999999999999999998664
No 455
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=92.60 E-value=0.26 Score=58.33 Aligned_cols=54 Identities=17% Similarity=0.319 Sum_probs=35.3
Q ss_pred hhhCCCeEEEEEcCCCC------hHHHHHHhcCCCCCCCCCEEEEEeCChhhhhhcCCCceecCCC
Q 001458 96 SRLQRKKVLLVIDDVVD------VKQLQSLAGNREWFGSGSRIIITSRDEHLLKTHGVDEVYKPHG 155 (1074)
Q Consensus 96 ~~L~~kr~LlVLDdv~~------~~~l~~l~~~~~~~~~gs~IiiTTR~~~v~~~~~~~~~~~l~~ 155 (1074)
..+-.+.=+||||.-.+ .++++.....+ +|+ ||+.|-|+....... ..++.+++
T Consensus 452 ~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f----~Gt-vl~VSHDr~Fl~~va-~~i~~~~~ 511 (530)
T COG0488 452 KLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF----EGT-VLLVSHDRYFLDRVA-TRIWLVED 511 (530)
T ss_pred HHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC----CCe-EEEEeCCHHHHHhhc-ceEEEEcC
Confidence 44456788999998543 34455544443 344 888899998877765 45666654
No 456
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=92.59 E-value=0.13 Score=45.72 Aligned_cols=25 Identities=36% Similarity=0.599 Sum_probs=22.0
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhcc
Q 001458 21 MIGICGMGGLGKTTIARVVYDLISH 45 (1074)
Q Consensus 21 vv~I~G~gGiGKTtLA~~v~~~~~~ 45 (1074)
++.+.|.+|+||||+|..++..++.
T Consensus 1 ~~~~~g~~G~Gktt~~~~l~~~l~~ 25 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAAALAK 25 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4789999999999999999987754
No 457
>PRK15453 phosphoribulokinase; Provisional
Probab=92.57 E-value=0.16 Score=54.13 Aligned_cols=29 Identities=24% Similarity=0.468 Sum_probs=24.6
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHHHHhcc
Q 001458 17 SDVRMIGICGMGGLGKTTIARVVYDLISH 45 (1074)
Q Consensus 17 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 45 (1074)
....+|+|.|-+|.||||+|+++++.++.
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~if~~ 31 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEKIFRR 31 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 34579999999999999999999976643
No 458
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=92.55 E-value=0.13 Score=53.82 Aligned_cols=27 Identities=33% Similarity=0.583 Sum_probs=22.7
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHhccc
Q 001458 20 RMIGICGMGGLGKTTIARVVYDLISHE 46 (1074)
Q Consensus 20 ~vv~I~G~gGiGKTtLA~~v~~~~~~~ 46 (1074)
|+|+|.|-||+||||+|..++..+...
T Consensus 1 ~~iav~gKGGvGKTt~~~nLA~~la~~ 27 (212)
T cd02117 1 RQIAIYGKGGIGKSTTSQNLSAALAEM 27 (212)
T ss_pred CEEEEECCCcCcHHHHHHHHHHHHHHC
Confidence 578999999999999999888766543
No 459
>PRK06761 hypothetical protein; Provisional
Probab=92.55 E-value=0.14 Score=55.14 Aligned_cols=27 Identities=37% Similarity=0.708 Sum_probs=24.2
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHhccc
Q 001458 20 RMIGICGMGGLGKTTIARVVYDLISHE 46 (1074)
Q Consensus 20 ~vv~I~G~gGiGKTtLA~~v~~~~~~~ 46 (1074)
++|.|.|++|.||||+|+.+++.....
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L~~~ 30 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDILSQN 30 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCcC
Confidence 589999999999999999999987654
No 460
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=92.54 E-value=0.17 Score=54.52 Aligned_cols=37 Identities=16% Similarity=0.176 Sum_probs=29.1
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHHHhcccccceEEEe
Q 001458 18 DVRMIGICGMGGLGKTTIARVVYDLISHEFEASGFLD 54 (1074)
Q Consensus 18 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 54 (1074)
.-.++.|.|.+|.||||+|.+++.....+=+.++|+.
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis 71 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVT 71 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEE
Confidence 4578999999999999999998765444445677776
No 461
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=92.53 E-value=0.1 Score=53.07 Aligned_cols=30 Identities=33% Similarity=0.465 Sum_probs=25.1
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhccccc
Q 001458 19 VRMIGICGMGGLGKTTIARVVYDLISHEFE 48 (1074)
Q Consensus 19 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~ 48 (1074)
.++|.|+|+.|+|||||+.++.......|.
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~~~~~~~~ 31 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQEIPDAFE 31 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhcCCcceE
Confidence 368999999999999999999887644443
No 462
>PRK04182 cytidylate kinase; Provisional
Probab=92.52 E-value=0.11 Score=52.72 Aligned_cols=24 Identities=42% Similarity=0.650 Sum_probs=21.9
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhc
Q 001458 21 MIGICGMGGLGKTTIARVVYDLIS 44 (1074)
Q Consensus 21 vv~I~G~gGiGKTtLA~~v~~~~~ 44 (1074)
+|+|.|+.|.||||+|++++++..
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg 25 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 689999999999999999998764
No 463
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=92.52 E-value=0.43 Score=48.54 Aligned_cols=27 Identities=30% Similarity=0.417 Sum_probs=23.8
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHHHhc
Q 001458 18 DVRMIGICGMGGLGKTTIARVVYDLIS 44 (1074)
Q Consensus 18 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 44 (1074)
...+|+|.|.+|.||||+|+.+.....
T Consensus 17 ~~~~i~i~G~~GsGKstla~~l~~~l~ 43 (184)
T TIGR00455 17 RGVVIWLTGLSGSGKSTIANALEKKLE 43 (184)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 346999999999999999999998664
No 464
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=92.50 E-value=0.09 Score=53.65 Aligned_cols=25 Identities=20% Similarity=0.336 Sum_probs=21.8
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHhc
Q 001458 20 RMIGICGMGGLGKTTIARVVYDLIS 44 (1074)
Q Consensus 20 ~vv~I~G~gGiGKTtLA~~v~~~~~ 44 (1074)
.+|+|+|+.|.|||||++.++....
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~~ 27 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQREQ 27 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCC
Confidence 4789999999999999999987543
No 465
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=92.48 E-value=0.14 Score=55.30 Aligned_cols=34 Identities=26% Similarity=0.386 Sum_probs=28.9
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHhcccccceEEEe
Q 001458 20 RMIGICGMGGLGKTTIARVVYDLISHEFEASGFLD 54 (1074)
Q Consensus 20 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 54 (1074)
++|+|+|.+|.|||||+..+...++.+. .++.+.
T Consensus 2 ~~i~i~G~~gSGKTTLi~~Li~~L~~~G-~V~~IK 35 (274)
T PRK14493 2 KVLSIVGYKATGKTTLVERLVDRLSGRG-RVGTVK 35 (274)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhCC-CEEEEE
Confidence 5799999999999999999999887776 455554
No 466
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=92.48 E-value=0.055 Score=55.17 Aligned_cols=21 Identities=33% Similarity=0.175 Sum_probs=18.9
Q ss_pred EEEEEccCCCcHHHHHHHHHH
Q 001458 21 MIGICGMGGLGKTTIARVVYD 41 (1074)
Q Consensus 21 vv~I~G~gGiGKTtLA~~v~~ 41 (1074)
|+.|.|..|.||||+.+.+.-
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~ 21 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGL 21 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHH
Confidence 478999999999999999983
No 467
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=92.47 E-value=0.49 Score=45.05 Aligned_cols=34 Identities=18% Similarity=-0.018 Sum_probs=25.0
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhcc--cccceEEEe
Q 001458 21 MIGICGMGGLGKTTIARVVYDLISH--EFEASGFLD 54 (1074)
Q Consensus 21 vv~I~G~gGiGKTtLA~~v~~~~~~--~F~~~~~~~ 54 (1074)
.+.|.|..|.|||+.+..++..... .....+++.
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~~~~~~~~~lv~~ 37 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLA 37 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHHhcccCCCEEEEc
Confidence 4689999999999999988875433 344555554
No 468
>PF13245 AAA_19: Part of AAA domain
Probab=92.45 E-value=0.22 Score=42.10 Aligned_cols=24 Identities=33% Similarity=0.501 Sum_probs=17.6
Q ss_pred EEEEEEccCCCcHHH-HHHHHHHHh
Q 001458 20 RMIGICGMGGLGKTT-IARVVYDLI 43 (1074)
Q Consensus 20 ~vv~I~G~gGiGKTt-LA~~v~~~~ 43 (1074)
+++.|.|.+|.|||+ ++..+.+-+
T Consensus 11 ~~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 11 PLFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 578889999999994 445554444
No 469
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=92.45 E-value=0.63 Score=54.21 Aligned_cols=26 Identities=23% Similarity=0.254 Sum_probs=23.2
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhc
Q 001458 19 VRMIGICGMGGLGKTTIARVVYDLIS 44 (1074)
Q Consensus 19 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 44 (1074)
.+|++++|+.|+||||++.+++..+.
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~ 281 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCV 281 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHH
Confidence 47999999999999999999997653
No 470
>COG4240 Predicted kinase [General function prediction only]
Probab=92.45 E-value=0.66 Score=47.04 Aligned_cols=39 Identities=26% Similarity=0.436 Sum_probs=30.6
Q ss_pred CCCeEEEEEEccCCCcHHHHHHHHHHHhcccc-cceEEEe
Q 001458 16 SSDVRMIGICGMGGLGKTTIARVVYDLISHEF-EASGFLD 54 (1074)
Q Consensus 16 ~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F-~~~~~~~ 54 (1074)
.+..-++||.|+-|.||||+|..+++...... +.+..+.
T Consensus 47 ~grPli~gisGpQGSGKStls~~i~~~L~~kg~ert~~lS 86 (300)
T COG4240 47 RGRPLIVGISGPQGSGKSTLSALIVRLLAAKGLERTATLS 86 (300)
T ss_pred cCCceEEEeecCCCCchhhHHHHHHHHHHHhcccceEEee
Confidence 34578999999999999999999998766555 4555443
No 471
>PLN02348 phosphoribulokinase
Probab=92.43 E-value=0.16 Score=56.97 Aligned_cols=30 Identities=23% Similarity=0.408 Sum_probs=26.1
Q ss_pred CCCeEEEEEEccCCCcHHHHHHHHHHHhcc
Q 001458 16 SSDVRMIGICGMGGLGKTTIARVVYDLISH 45 (1074)
Q Consensus 16 ~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 45 (1074)
.+...+|||.|.+|.||||+|+.+.+.+..
T Consensus 46 ~~~p~IIGIaG~SGSGKSTfA~~L~~~Lg~ 75 (395)
T PLN02348 46 DDGTVVIGLAADSGCGKSTFMRRLTSVFGG 75 (395)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 356789999999999999999999987653
No 472
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=92.43 E-value=0.14 Score=56.11 Aligned_cols=34 Identities=21% Similarity=0.285 Sum_probs=25.7
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHhcccccceEEE
Q 001458 20 RMIGICGMGGLGKTTIARVVYDLISHEFEASGFL 53 (1074)
Q Consensus 20 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 53 (1074)
++|+|+|-||+||||+|..++.....+-..+.-+
T Consensus 2 ~~i~~~gKGGVGKTT~a~nLA~~La~~G~rVLli 35 (279)
T PRK13230 2 RKFCFYGKGGIGKSTTVCNIAAALAESGKKVLVV 35 (279)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHhCCCEEEEE
Confidence 5788999999999999999988665443334434
No 473
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=92.41 E-value=0.24 Score=51.01 Aligned_cols=25 Identities=28% Similarity=0.484 Sum_probs=22.6
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhcc
Q 001458 21 MIGICGMGGLGKTTIARVVYDLISH 45 (1074)
Q Consensus 21 vv~I~G~gGiGKTtLA~~v~~~~~~ 45 (1074)
+|+|.|+.|+||||+|+.+++.+..
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~l~~ 26 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERLEA 26 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6899999999999999999987754
No 474
>PRK00300 gmk guanylate kinase; Provisional
Probab=92.40 E-value=0.098 Score=54.39 Aligned_cols=25 Identities=24% Similarity=0.387 Sum_probs=22.6
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHh
Q 001458 19 VRMIGICGMGGLGKTTIARVVYDLI 43 (1074)
Q Consensus 19 ~~vv~I~G~gGiGKTtLA~~v~~~~ 43 (1074)
-.+|+|+|+.|.||||||+.++...
T Consensus 5 g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3689999999999999999999864
No 475
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=92.40 E-value=0.57 Score=50.08 Aligned_cols=61 Identities=23% Similarity=0.212 Sum_probs=39.3
Q ss_pred HHHhhcCCCCCeEEEEEEccCCCcHHHHHHHHHHHhccc-ccceEEEeechhhhccCChHHHHHHHHHH
Q 001458 8 LRFLMDSGSSDVRMIGICGMGGLGKTTIARVVYDLISHE-FEASGFLDNVREISSKGGLVSLQRQLLSQ 75 (1074)
Q Consensus 8 l~~lL~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-F~~~~~~~~~~~~s~~~~~~~l~~~ll~~ 75 (1074)
|..++. +-..-.++.|.|.+|.||||+|.+++.....+ =..++|+. -.....++.+.++..
T Consensus 3 LD~~~~-Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s------~E~~~~~~~~r~~~~ 64 (242)
T cd00984 3 LDNLTG-GLQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFS------LEMSKEQLLQRLLAS 64 (242)
T ss_pred hhhhhc-CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEe------CCCCHHHHHHHHHHH
Confidence 344443 33344789999999999999999988755443 34556654 233445566666544
No 476
>PRK05922 type III secretion system ATPase; Validated
Probab=92.37 E-value=0.27 Score=56.31 Aligned_cols=24 Identities=21% Similarity=0.326 Sum_probs=20.8
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHh
Q 001458 20 RMIGICGMGGLGKTTIARVVYDLI 43 (1074)
Q Consensus 20 ~vv~I~G~gGiGKTtLA~~v~~~~ 43 (1074)
..++|.|..|+|||||++.+....
T Consensus 158 qrigI~G~nG~GKSTLL~~Ia~~~ 181 (434)
T PRK05922 158 QRIGVFSEPGSGKSSLLSTIAKGS 181 (434)
T ss_pred cEEEEECCCCCChHHHHHHHhccC
Confidence 358999999999999999998643
No 477
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=92.37 E-value=0.51 Score=53.99 Aligned_cols=24 Identities=25% Similarity=0.278 Sum_probs=21.8
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHH
Q 001458 19 VRMIGICGMGGLGKTTIARVVYDL 42 (1074)
Q Consensus 19 ~~vv~I~G~gGiGKTtLA~~v~~~ 42 (1074)
-.+|+++|+.|+||||++..++.+
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~ 214 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAAR 214 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 579999999999999999999874
No 478
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=92.37 E-value=0.19 Score=49.06 Aligned_cols=37 Identities=24% Similarity=0.238 Sum_probs=29.1
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHHHHhcccccceEEE
Q 001458 17 SDVRMIGICGMGGLGKTTIARVVYDLISHEFEASGFL 53 (1074)
Q Consensus 17 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 53 (1074)
....||-+.|.+|.||||+|.+++++...+--.+..+
T Consensus 21 ~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~L 57 (197)
T COG0529 21 QKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLL 57 (197)
T ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEe
Confidence 3457899999999999999999999876655444333
No 479
>PF00142 Fer4_NifH: 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family; InterPro: IPR000392 This entry represents members of the NifH/BchL/ChlL family. Nitrogen fixing bacteria possess a nitrogenase enzyme complex that catalyses the reduction of molecular nitrogen to ammonia [, , ]. The nitrogenase enzyme complex consists of two components: Component I is nitrogenase MoFe protein or dinitrogenase, which contains 2 molecules each of 2 non-identical subunits. Component II is nitrogenase Fe protein or dinitrogenase reductase, which is a homodimer. The monomer is encoded by the nifH gene []. Component II has 2 ATP-binding domains and one 4Fe-4S cluster per homodimer: it supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component I for the reduction of molecular nitrogen to ammonia []. There are a number of conserved regions in the sequence of these proteins: in the N-terminal section there is an ATP-binding site motif 'A' (P-loop) IPR001687 from INTERPRO and in the central section there are two conserved cysteines which have been shown, in nifH, to be the ligands of the 4Fe-4S cluster. Protochlorophyllide reductase is involved in light-independent chlorophyll biosynthesis. The light-independent reaction uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This enzyme complex is composed of three subunits: ChlL, ChlN and ChlB. ChlL is present as a homodimer, and binds one 4Fe-4S cluster per dimer. The conserved domains, including the ATP-binding motif and the Fe-S binding motif found in the three subunits, are similar to those in nitrogenases []. ; GO: 0005524 ATP binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1CP2_A 2AFI_F 1N2C_F 1FP6_C 2AFK_G 1M34_M 1XD8_A 1NIP_A 1M1Y_N 1G21_H ....
Probab=92.37 E-value=0.16 Score=53.34 Aligned_cols=34 Identities=29% Similarity=0.362 Sum_probs=25.5
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHhcccccceEEE
Q 001458 20 RMIGICGMGGLGKTTIARVVYDLISHEFEASGFL 53 (1074)
Q Consensus 20 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 53 (1074)
|.|+|+|-|||||||.|..+...+...-..+.-+
T Consensus 1 r~IAiYGKGGIGKST~~~Nlsaala~~G~kVl~i 34 (273)
T PF00142_consen 1 RKIAIYGKGGIGKSTTASNLSAALAEMGKKVLQI 34 (273)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEE
T ss_pred CeEEEEcCCCcccChhhhHHHHHHHhccceeeEe
Confidence 5689999999999999999887665554444444
No 480
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=92.36 E-value=0.27 Score=52.03 Aligned_cols=38 Identities=16% Similarity=0.285 Sum_probs=29.1
Q ss_pred HHHHHhhcCC-CCCeEEEEEEccCCCcHHHHHHHHHHHh
Q 001458 6 EKLRFLMDSG-SSDVRMIGICGMGGLGKTTIARVVYDLI 43 (1074)
Q Consensus 6 ~~l~~lL~~~-~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 43 (1074)
..|+.-+..+ ..+.-+++.+|..|+||.-.|+.+++..
T Consensus 96 ~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~ 134 (344)
T KOG2170|consen 96 NALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENL 134 (344)
T ss_pred HHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHH
Confidence 3445555443 4568899999999999999999999743
No 481
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=92.36 E-value=0.26 Score=56.92 Aligned_cols=92 Identities=22% Similarity=0.153 Sum_probs=49.0
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHhccc-ccceEEEeechhhhccCChHHHHHHHHHHHhcccCCc---cccccc------
Q 001458 20 RMIGICGMGGLGKTTIARVVYDLISHE-FEASGFLDNVREISSKGGLVSLQRQLLSQLLKLADNS---IWNVFD------ 89 (1074)
Q Consensus 20 ~vv~I~G~gGiGKTtLA~~v~~~~~~~-F~~~~~~~~~~~~s~~~~~~~l~~~ll~~l~~~~~~~---~~~~~~------ 89 (1074)
+-++|.|.+|+|||||+.++++....+ -+.++|. -+.+- ...+.++.+++...-......- ..+..-
T Consensus 144 QR~gIfa~~G~GKt~Ll~~~~~~~~~~~~dv~V~~-liGER--~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a 220 (461)
T PRK12597 144 GKTGLFGGAGVGKTVLMMELIFNISKQHSGSSVFA-GVGER--SREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRV 220 (461)
T ss_pred CEEEeecCCCCChhHHHHHHHHHHHhhCCCEEEEE-cCCcc--hHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHH
Confidence 358999999999999999998866533 3444443 23221 2234444444443211000000 001100
Q ss_pred --hHHHHHhhh---CCCeEEEEEcCCCChH
Q 001458 90 --GIDMLGSRL---QRKKVLLVIDDVVDVK 114 (1074)
Q Consensus 90 --~~~~i~~~L---~~kr~LlVLDdv~~~~ 114 (1074)
..-.+-+.+ +++++|+++|++-...
T Consensus 221 ~~~a~tiAEyfrd~~G~~VLl~~DslTR~A 250 (461)
T PRK12597 221 VLTGLTIAEYLRDEEKEDVLLFIDNIFRFV 250 (461)
T ss_pred HHHHHHHHHHHHHhcCCceEEEeccchHHH
Confidence 011122333 3799999999996543
No 482
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=92.33 E-value=0.28 Score=51.03 Aligned_cols=30 Identities=20% Similarity=0.315 Sum_probs=26.2
Q ss_pred CCCeEEEEEEccCCCcHHHHHHHHHHHhcc
Q 001458 16 SSDVRMIGICGMGGLGKTTIARVVYDLISH 45 (1074)
Q Consensus 16 ~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 45 (1074)
..++++|+++|..|.|||||..++.+....
T Consensus 19 ~~~~~~i~~~G~~gsGKTTli~~l~~~~~~ 48 (207)
T TIGR00073 19 KHGLVVLNFMSSPGSGKTTLIEKLIDNLKD 48 (207)
T ss_pred hcCcEEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 457999999999999999999999886543
No 483
>PRK13236 nitrogenase reductase; Reviewed
Probab=92.32 E-value=0.17 Score=55.77 Aligned_cols=30 Identities=27% Similarity=0.551 Sum_probs=25.2
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHHHHhccc
Q 001458 17 SDVRMIGICGMGGLGKTTIARVVYDLISHE 46 (1074)
Q Consensus 17 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 46 (1074)
.+.|+|.+.|-||+||||+|..++..+..+
T Consensus 4 ~~~~~~~~~GKGGVGKTt~a~NLA~~La~~ 33 (296)
T PRK13236 4 ENIRQIAFYGKGGIGKSTTSQNTLAAMAEM 33 (296)
T ss_pred cCceEEEEECCCcCCHHHHHHHHHHHHHHC
Confidence 457999999999999999999888755444
No 484
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.31 E-value=0.079 Score=30.34 Aligned_cols=16 Identities=50% Similarity=0.731 Sum_probs=6.2
Q ss_pred CCCeEecCCCcCcccC
Q 001458 754 SLKELYLSKNSFVSLP 769 (1074)
Q Consensus 754 ~L~~L~Ls~n~l~~lp 769 (1074)
+|+.|+|++|+++.+|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4555555555554443
No 485
>PRK14737 gmk guanylate kinase; Provisional
Probab=92.29 E-value=0.12 Score=52.57 Aligned_cols=26 Identities=23% Similarity=0.355 Sum_probs=23.2
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHHHh
Q 001458 18 DVRMIGICGMGGLGKTTIARVVYDLI 43 (1074)
Q Consensus 18 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 43 (1074)
..++|.|.|++|+|||||++++..+.
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 35789999999999999999998764
No 486
>PLN02459 probable adenylate kinase
Probab=92.26 E-value=0.52 Score=50.10 Aligned_cols=91 Identities=25% Similarity=0.267 Sum_probs=47.5
Q ss_pred EEEEccCCCcHHHHHHHHHHHhcccccceEEEeechh-hhccCChHHHHHHHHHHHhcccCCccccccchHHHHHhhhCC
Q 001458 22 IGICGMGGLGKTTIARVVYDLISHEFEASGFLDNVRE-ISSKGGLVSLQRQLLSQLLKLADNSIWNVFDGIDMLGSRLQR 100 (1074)
Q Consensus 22 v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~-~s~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~~ 100 (1074)
|.|.|++|.||||+|+.+++++. |....-=.-+|+ +.....+....+.++.+ ......+-....+++++..
T Consensus 32 ii~~G~PGsGK~T~a~~la~~~~--~~~is~gdllR~ei~~~t~lg~~i~~~~~~------G~lVPdeiv~~ll~~~l~~ 103 (261)
T PLN02459 32 WVFLGCPGVGKGTYASRLSKLLG--VPHIATGDLVREEIKSSGPLGAQLKEIVNQ------GKLVPDEIIFSLLSKRLEA 103 (261)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC--CcEEeCcHHHHHHHhccchhHHHHHHHHHc------CCccCHHHHHHHHHHHHhc
Confidence 67789999999999999998653 221111001111 11111222222222221 1222223345666676643
Q ss_pred ----CeEEEEEcCC-CChHHHHHHh
Q 001458 101 ----KKVLLVIDDV-VDVKQLQSLA 120 (1074)
Q Consensus 101 ----kr~LlVLDdv-~~~~~l~~l~ 120 (1074)
.+--+|||++ -+..|.+.|.
T Consensus 104 ~~~~~~~g~iLDGFPRt~~Qa~~Le 128 (261)
T PLN02459 104 GEEEGESGFILDGFPRTVRQAEILE 128 (261)
T ss_pred ccccCCceEEEeCCCCCHHHHHHHH
Confidence 2456899998 4556666654
No 487
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=92.25 E-value=0.15 Score=59.44 Aligned_cols=44 Identities=18% Similarity=0.280 Sum_probs=32.5
Q ss_pred ChhHHHHHHHhh----cCCCCCeEEEEEEccCCCcHHHHHHHHHHHhc
Q 001458 1 MDSRCEKLRFLM----DSGSSDVRMIGICGMGGLGKTTIARVVYDLIS 44 (1074)
Q Consensus 1 ~~~~~~~l~~lL----~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 44 (1074)
|+..++++.+.| ......-+++.++|++|+||||||+.+++...
T Consensus 81 lee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le 128 (644)
T PRK15455 81 MEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLME 128 (644)
T ss_pred cHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHH
Confidence 345566666655 22234468999999999999999999998553
No 488
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=92.19 E-value=0.29 Score=54.31 Aligned_cols=31 Identities=26% Similarity=0.430 Sum_probs=26.3
Q ss_pred CCCeEEEEEEccCCCcHHHHHHHHHHHhccc
Q 001458 16 SSDVRMIGICGMGGLGKTTIARVVYDLISHE 46 (1074)
Q Consensus 16 ~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 46 (1074)
.....+|+|.|.+|+|||||+..+...+...
T Consensus 53 ~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~ 83 (332)
T PRK09435 53 TGNALRIGITGVPGVGKSTFIEALGMHLIEQ 83 (332)
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 4567899999999999999999998866543
No 489
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=92.11 E-value=0.29 Score=56.15 Aligned_cols=93 Identities=20% Similarity=0.201 Sum_probs=49.9
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHhcccccceEEEeechhhhccCChHHHHHHHHHHHhcccCC---ccccccc-------
Q 001458 20 RMIGICGMGGLGKTTIARVVYDLISHEFEASGFLDNVREISSKGGLVSLQRQLLSQLLKLADN---SIWNVFD------- 89 (1074)
Q Consensus 20 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~ll~~l~~~~~~---~~~~~~~------- 89 (1074)
+-++|.|.+|+|||||+..++.........++.+.-+.+- ...+.++.+++...-...... ...+..-
T Consensus 144 Qr~~If~~~G~GKt~L~~~~~~~~~~~~~~v~V~alIGER--~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~~a~ 221 (461)
T TIGR01039 144 GKIGLFGGAGVGKTVLIQELINNIAKEHGGYSVFAGVGER--TREGNDLYHEMKESGVIDKTALVYGQMNEPPGARMRVA 221 (461)
T ss_pred CEEEeecCCCCChHHHHHHHHHHHHhcCCCeEEEEEecCC--chHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHH
Confidence 4589999999999999999987654333334333334332 233445555554321000000 0001100
Q ss_pred -hHHHHHhhh---CCCeEEEEEcCCCChH
Q 001458 90 -GIDMLGSRL---QRKKVLLVIDDVVDVK 114 (1074)
Q Consensus 90 -~~~~i~~~L---~~kr~LlVLDdv~~~~ 114 (1074)
..-.+-+.+ +++++|+|+||+....
T Consensus 222 ~~a~tiAEyfrd~~G~~VLll~DslTR~A 250 (461)
T TIGR01039 222 LTGLTMAEYFRDEQGQDVLLFIDNIFRFT 250 (461)
T ss_pred HHHHHHHHHHHHhcCCeeEEEecchhHHH
Confidence 011122333 5689999999997654
No 490
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=92.10 E-value=0.85 Score=54.06 Aligned_cols=151 Identities=18% Similarity=0.213 Sum_probs=78.3
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhcccccceEEEeechhhhccCChHHHHHHHHHHHhcccCCccccccchHHHHHhhh
Q 001458 19 VRMIGICGMGGLGKTTIARVVYDLISHEFEASGFLDNVREISSKGGLVSLQRQLLSQLLKLADNSIWNVFDGIDMLGSRL 98 (1074)
Q Consensus 19 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L 98 (1074)
++=|.++|++|.|||.||++++....--|-. .|.. +. .+...+. ......+...+..
T Consensus 183 PkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~---------iSGS-~F-------VemfVGv------GAsRVRdLF~qAk 239 (596)
T COG0465 183 PKGVLLVGPPGTGKTLLAKAVAGEAGVPFFS---------ISGS-DF-------VEMFVGV------GASRVRDLFEQAK 239 (596)
T ss_pred ccceeEecCCCCCcHHHHHHHhcccCCCcee---------ccch-hh-------hhhhcCC------CcHHHHHHHHHhh
Confidence 5668999999999999999999754333211 1100 00 0000000 0001112223333
Q ss_pred CCCeEEEEEcCCCCh---------------H-HHHHHhcCCCCCCCCCEEEE--EeCChhhhh-----hcCCCceecCCC
Q 001458 99 QRKKVLLVIDDVVDV---------------K-QLQSLAGNREWFGSGSRIII--TSRDEHLLK-----THGVDEVYKPHG 155 (1074)
Q Consensus 99 ~~kr~LlVLDdv~~~---------------~-~l~~l~~~~~~~~~gs~Iii--TTR~~~v~~-----~~~~~~~~~l~~ 155 (1074)
++-+..|++|.+|.. + .+..+....+-|+.+.-||| .|--.+|+. .-.-+..+.++.
T Consensus 240 k~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~ 319 (596)
T COG0465 240 KNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIAATNRPDVLDPALLRPGRFDRQILVEL 319 (596)
T ss_pred ccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCceEEEecCCCcccchHhhcCCCCcceeeecCC
Confidence 455688888887642 2 26666666666664333333 232233332 123355677777
Q ss_pred CChHHHHHHHHHhhhcCCCC-ChhHHHHHHHHHHHhCCCchH
Q 001458 156 LNYDEALQLFNMKAFKTYQP-LQECVQLSARIIRYAGGLPLA 196 (1074)
Q Consensus 156 L~~~ea~~Lf~~~a~~~~~~-~~~~~~~~~~i~~~~~GlPLa 196 (1074)
.+-....+.++-|+-...-. .-++. .|++.+-|.-.|
T Consensus 320 PDi~gRe~IlkvH~~~~~l~~~Vdl~----~iAr~tpGfsGA 357 (596)
T COG0465 320 PDIKGREQILKVHAKNKPLAEDVDLK----KIARGTPGFSGA 357 (596)
T ss_pred cchhhHHHHHHHHhhcCCCCCcCCHH----HHhhhCCCcccc
Confidence 77777778887666332221 11222 266666665544
No 491
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=92.07 E-value=0.71 Score=47.31 Aligned_cols=25 Identities=32% Similarity=0.376 Sum_probs=21.9
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHhc
Q 001458 20 RMIGICGMGGLGKTTIARVVYDLIS 44 (1074)
Q Consensus 20 ~vv~I~G~gGiGKTtLA~~v~~~~~ 44 (1074)
.++.|.|.+|+||||++..++..+.
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~ 57 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALA 57 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 3789999999999999999987654
No 492
>PRK14527 adenylate kinase; Provisional
Probab=92.05 E-value=0.14 Score=52.55 Aligned_cols=26 Identities=23% Similarity=0.249 Sum_probs=23.2
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHHHh
Q 001458 18 DVRMIGICGMGGLGKTTIARVVYDLI 43 (1074)
Q Consensus 18 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 43 (1074)
...+|.|.|++|.||||+|+.++++.
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~ 30 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQEL 30 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998765
No 493
>PLN02200 adenylate kinase family protein
Probab=92.04 E-value=0.14 Score=54.12 Aligned_cols=26 Identities=19% Similarity=0.158 Sum_probs=23.0
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHHHh
Q 001458 18 DVRMIGICGMGGLGKTTIARVVYDLI 43 (1074)
Q Consensus 18 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 43 (1074)
...+|.|.|++|.||||+|+.++++.
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~~~ 67 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVETF 67 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999998765
No 494
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=92.04 E-value=0.16 Score=55.52 Aligned_cols=34 Identities=29% Similarity=0.393 Sum_probs=25.0
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHhcccccceEEE
Q 001458 20 RMIGICGMGGLGKTTIARVVYDLISHEFEASGFL 53 (1074)
Q Consensus 20 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 53 (1074)
++|+|+|-||+||||+|..++..+..+=..+..+
T Consensus 2 ~~iav~gKGGVGKTT~a~nLA~~La~~G~rVllv 35 (273)
T PRK13232 2 RQIAIYGKGGIGKSTTTQNLTAALSTMGNKILLV 35 (273)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHhhCCCeEEE
Confidence 5788889999999999999987665433333333
No 495
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=91.99 E-value=0.15 Score=52.55 Aligned_cols=22 Identities=41% Similarity=0.726 Sum_probs=20.2
Q ss_pred EEEEEEccCCCcHHHHHHHHHH
Q 001458 20 RMIGICGMGGLGKTTIARVVYD 41 (1074)
Q Consensus 20 ~vv~I~G~gGiGKTtLA~~v~~ 41 (1074)
-++||+|..|.||||||+.++-
T Consensus 34 e~lgivGeSGsGKSTL~r~l~G 55 (252)
T COG1124 34 ETLGIVGESGSGKSTLARLLAG 55 (252)
T ss_pred CEEEEEcCCCCCHHHHHHHHhc
Confidence 3799999999999999999984
No 496
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=91.99 E-value=0.37 Score=53.13 Aligned_cols=53 Identities=19% Similarity=0.308 Sum_probs=34.2
Q ss_pred HHHHhhhCCCeEEEEEcCCCCh----H------HHHHHhcCCCCCCCCCEEEEEeCChhhhhhcCCCc
Q 001458 92 DMLGSRLQRKKVLLVIDDVVDV----K------QLQSLAGNREWFGSGSRIIITSRDEHLLKTHGVDE 149 (1074)
Q Consensus 92 ~~i~~~L~~kr~LlVLDdv~~~----~------~l~~l~~~~~~~~~gs~IiiTTR~~~v~~~~~~~~ 149 (1074)
..|-..+..+.-+++.|.+... . .+..++.. .|+.+++.|+.+++.+.+..+.
T Consensus 516 ~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkiselaRe-----~giTlivvThrpEv~~AL~PD~ 578 (593)
T COG2401 516 AKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELARE-----AGITLIVVTHRPEVGNALRPDT 578 (593)
T ss_pred HHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHHHHH-----hCCeEEEEecCHHHHhccCCce
Confidence 3455666777788899987432 1 23333322 5788888888888887775554
No 497
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=91.97 E-value=0.16 Score=53.75 Aligned_cols=49 Identities=14% Similarity=0.142 Sum_probs=32.1
Q ss_pred HHHHHhhcCCCCCeEEEEEEccCCCcHHHHHHHHHHHhcccccceEEEe
Q 001458 6 EKLRFLMDSGSSDVRMIGICGMGGLGKTTIARVVYDLISHEFEASGFLD 54 (1074)
Q Consensus 6 ~~l~~lL~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 54 (1074)
+.+.+.+..+-..-.++.|.|..|.||||+|.+++.....+-..++|+.
T Consensus 11 ~~ld~~l~ggi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~ 59 (230)
T PRK08533 11 DELHKRLGGGIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVS 59 (230)
T ss_pred eeeehhhCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEe
Confidence 3445555543344568999999999999998776654422324556654
No 498
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=91.93 E-value=0.28 Score=51.93 Aligned_cols=36 Identities=25% Similarity=0.274 Sum_probs=23.8
Q ss_pred HHHHHHHhhcCCCCCeEEEEEEccCCCcHHHHHHHHHHHh
Q 001458 4 RCEKLRFLMDSGSSDVRMIGICGMGGLGKTTIARVVYDLI 43 (1074)
Q Consensus 4 ~~~~l~~lL~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 43 (1074)
..+-+...+... .+..|+|++|.||||++..+...+
T Consensus 6 Q~~Ai~~~~~~~----~~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 6 QREAIQSALSSN----GITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp HHHHHHHHCTSS----E-EEEE-STTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCC----CCEEEECCCCCChHHHHHHHHHHh
Confidence 344555555422 278999999999998777777655
No 499
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=91.92 E-value=0.21 Score=49.17 Aligned_cols=27 Identities=33% Similarity=0.570 Sum_probs=24.1
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHhccc
Q 001458 20 RMIGICGMGGLGKTTIARVVYDLISHE 46 (1074)
Q Consensus 20 ~vv~I~G~gGiGKTtLA~~v~~~~~~~ 46 (1074)
++++|+|..|.|||||+..+......+
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~l~~~ 28 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPALSAR 28 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 589999999999999999999877554
No 500
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=91.92 E-value=0.14 Score=51.33 Aligned_cols=23 Identities=39% Similarity=0.663 Sum_probs=21.3
Q ss_pred EEEEEccCCCcHHHHHHHHHHHh
Q 001458 21 MIGICGMGGLGKTTIARVVYDLI 43 (1074)
Q Consensus 21 vv~I~G~gGiGKTtLA~~v~~~~ 43 (1074)
+|+|.|+.|.||||+|+.+.++.
T Consensus 2 iI~i~G~~GSGKstia~~la~~l 24 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKL 24 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 68999999999999999998865
Done!