Query 001458
Match_columns 1074
No_of_seqs 606 out of 5547
Neff 9.3
Searched_HMMs 29240
Date Tue Mar 26 16:22:35 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001458.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_760-764//hhsearch_pdb/001458hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 1.0 1 1 363.7 22.0 296 2-311 134-473 (549)
2 3rgz_A Protein brassinosteroid 1.0 1 1 338.5 34.5 385 388-793 152-555 (768)
3 3sfz_A APAF-1, apoptotic pepti 1.0 1 1 337.0 18.9 296 2-309 130-452 (1249)
4 3rgz_A Protein brassinosteroid 1.0 1 1 333.9 30.8 153 545-697 395-549 (768)
5 3t6q_A CD180 antigen; protein- 1.0 1 1 319.3 37.1 486 338-855 34-574 (606)
6 1vt4_I APAF-1 related killer D 1.0 1 1 314.2 12.2 297 2-331 134-460 (1221)
7 3vq2_A TLR4, TOLL-like recepto 1.0 1 1 312.6 31.2 480 337-855 32-572 (606)
8 3j0a_A TOLL-like receptor 5; m 1.0 1 1 303.3 30.0 473 338-852 25-571 (844)
9 4eco_A Uncharacterized protein 1.0 1 1 298.6 26.9 419 337-787 81-598 (636)
10 1z6t_A APAF-1, apoptotic prote 1.0 1 1 295.7 17.3 317 2-335 130-497 (591)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=1.00 E-value=1 Score=363.71 Aligned_cols=296 Identities=17% Similarity=0.150 Sum_probs=241.1
Q ss_pred HHHHHHHHHHHCCC-CCCEEEEEEECCCCCCHHHHHHHHHH----HHCCCCCCEEEEEECHHHHCC--CCHHHHHHHHHH
Q ss_conf 16899999845189-99849999994698708999999998----841645512897501343325--995999999999
Q 001458 2 DSRCEKLRFLMDSG-SSDVRMIGICGMGGLGKTTIARVVYD----LISHEFEASGFLDNVREISSK--GGLVSLQRQLLS 74 (1074)
Q Consensus 2 ~~~~~~l~~ll~~~-~~~~~~v~I~G~gGiGKTtLA~~v~~----~~~~~F~~~~~~~~~~~~s~~--~~~~~l~~~ll~ 74 (1074)
+..+++|..+|..+ ..++++|+|+|||||||||||+++|+ ++..+|++++|+. ++.. ++...+++.++.
T Consensus 134 ~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~----vs~~~~~~~~~~~~~il~ 209 (549)
T 2a5y_B 134 EYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLK----DSGTAPKSTFDLFTDILL 209 (549)
T ss_dssp HHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEE----CCCCSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEE----ECCCCCCCHHHHHHHHHH
T ss_conf 1799999998725157896289998699998899999999840698746699579999----789878799999999999
Q ss_pred HHHCCCC-CCCCCC-----CCHHHHHHHHHCCC-EEEEEECCCCCHHHHHHHHCCCCCCCCCCEEEEEECCHHHHHHCC-
Q ss_conf 9940358-963451-----00089999541898-079998079996877787229888899987999939834453419-
Q 001458 75 QLLKLAD-NSIWNV-----FDGIDMLGSRLQRK-KVLLVIDDVVDVKQLQSLAGNREWFGSGSRIIITSRDEHLLKTHG- 146 (1074)
Q Consensus 75 ~l~~~~~-~~~~~~-----~~~~~~i~~~L~~k-r~LlVlDdv~~~~~l~~l~~~~~~~~~gs~iiiTTR~~~v~~~~~- 146 (1074)
++..... ....+. ......+++.|.++ |+||||||||+.+++ .+.. .+||+||||||++.++..++
T Consensus 210 ~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~~~-----~~gs~ilvTTR~~~v~~~~~~ 283 (549)
T 2a5y_B 210 MLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RWAQ-----ELRLRCLVTTRDVEISNAASQ 283 (549)
T ss_dssp HHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HHHH-----HTTCEEEEEESBGGGGGGCCS
T ss_pred HHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHH-CCCC-----CCCCEEEEECCCHHHHHHCCC
T ss_conf 9853755345555331469999999999976898489999799971441-5432-----699889997497799997088
Q ss_pred CCCEECCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHH-HHCCCCC
Q ss_conf 983222899996789999999520589997569999999999958990589999732089998899999998-7509995
Q 001458 147 VDEVYKPHGLNYDEALQLFNMKAFKTYQPLQECVQLSARIIRYAGGLPLALEVLGSFLSGRSVDEWRSTLER-LEIEPPS 225 (1074)
Q Consensus 147 ~~~~~~l~~l~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~l~~~L~~~~~~~w~~~l~~-l~~~~~~ 225 (1074)
...+|++++|+.++|++||.++||.... ...+.+++++|+++|+|+|||++++|+.|+.+. .+|...+.. +...+..
T Consensus 284 ~~~~~~l~~L~~~ea~~Lf~~~a~~~~~-~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~-w~~~~~l~~~l~~~~~~ 361 (549)
T 2a5y_B 284 TCEFIEVTSLEIDECYDFLEAYGMPMPV-GEKEEDVLNKTIELSSGNPATLMMFFKSCEPKT-FEKMAQLNNKLESRGLV 361 (549)
T ss_dssp CEEEEECCCCCHHHHHHHHHHTSCCCC---CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSS-HHHHHHHHHHHHHHCSS
T ss_pred CCEEEECCCCCHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCH-HHHHHHHHHHHHCCCHH
T ss_conf 9738989998989999999987448998-556899999999995998399999999844344-89998757876136477
Q ss_pred HHHHHHHHCCCCCCHHHHHHHE-----------EEECCCCCCCHHHHHHHHHHC--CCCCCC-----------CHHHHHC
Q ss_conf 2677886212467576562420-----------350145888988999985407--998631-----------0214201
Q 001458 226 EILDILQISFDGLQELEKKIFL-----------DIACFFKGNDRDYVTNFLEGC--GFHPVI-----------GIRVLIE 281 (1074)
Q Consensus 226 ~i~~~l~~sy~~L~~~~k~~fl-----------~~a~f~~~~~~~~~~~~~~~~--g~~~~~-----------~i~~L~~ 281 (1074)
.|..++++||+.|+...|.||+ |||+||+++..+ ++.|.++ ||.... .+..|++
T Consensus 362 ~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~--i~~w~a~~~G~i~~~~~~~~~~~~~~~l~~L~~ 439 (549)
T 2a5y_B 362 GVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP--VKLWSCVIPVDICSNEEEQLDDEVADRLKRLSK 439 (549)
T ss_dssp TTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE--HHHHHHHSCC-------CCCTHHHHHHHHHTTT
T ss_pred HHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHEEEECCCCEEE--EEEEEEECCCEECCCCCCCCHHHHHHHHHHHHH
T ss_conf 789897516202267999997526522336743235608997666--533110135500267789999999999999987
Q ss_pred CCCEEEE----CCEEEHHHHHHHHHHHHHHCCCC
Q ss_conf 3650872----89576179999999999621592
Q 001458 282 KCLITVH----NNTLWMHDLLQELGQQIVQRQSP 311 (1074)
Q Consensus 282 ~~Li~~~----~~~~~mHdli~~~~~~i~~~~~~ 311 (1074)
++|++.. ..+|.|||++|++|++++++++.
T Consensus 440 rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 440 RGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp BSSCSEEECSSSCEEECCHHHHHHHHTTSCTHHH
T ss_pred CCCEEEECCCCCEEEEECHHHHHHHHHHHHHHHH
T ss_conf 5883671479804999676999999999889899
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=338.48 Aligned_cols=385 Identities=22% Similarity=0.277 Sum_probs=167.0
Q ss_pred CCEEEEECCCCCCCCCCC----C-CCCCCEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 831999608999999988----7-88981099957678533233666888984998238989977999899988758970
Q 001458 388 RLRLLGWRGYPLKFLPSN----L-QMDKTIEIYMCYSRIGELWKGIKHLDKLKVMILSHSENLIRMPDFTGAPNLEKLIL 462 (1074)
Q Consensus 388 ~Lr~L~l~~~~l~~lp~~----~-~l~~L~~L~l~~s~i~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~l~~L~~L~L 462 (1074)
+|++|+++++.+...+.. + .+.+|++|+++++.+..... +..+++|++|++++|.....+|.+..+++|++|++
T Consensus 152 ~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~L 230 (768)
T 3rgz_A 152 SLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD-VSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDI 230 (768)
T ss_dssp TCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB-CTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEEC
T ss_pred CCCEEECCCCCCCCCCCHHHHHHCCCCCCCEEECCCCCCCCCCC-CCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEEC
T ss_conf 99989897983588587155664358988989897880346578-45478689898928827887711126999998979
Q ss_pred CCCCCCCCCCCCHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEECC------CCCCCCCCC-CCCCEEECCCCCCCCC
Q ss_conf 386565423700005887539965688899767841012546701167------676212379-8786995459989986
Q 001458 463 EGCTRLYEIHPSLLLHNKLIILNMKDCTSLITLPGKILMKSLEKLNLK------SLPTTISGL-KCLSTLDVSGDLKFRE 535 (1074)
Q Consensus 463 ~~c~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~l~------~l~~~~~~l-~~L~~L~L~~~~~~~~ 535 (1074)
++|.....++..+..+++|+.|++++|......|.. .+++|+.|++. .+|..+... ++|+.|++++|...+.
T Consensus 231 s~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~-~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~ 309 (768)
T 3rgz_A 231 SGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL-PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGA 309 (768)
T ss_dssp CSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC-CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEEC
T ss_pred CCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCC-CCCCCCEEECCCCCCCCCCCHHHHHHCCCCCEEECCCCCCCCC
T ss_conf 488587816577744888898989888665716724-3687898979178557725888884468688998968967784
Q ss_pred CCHHHHCCCCCCEEECCCCCCC-CCCHH-HHCCCCCCEEECCCCCCCCCCCCCCCCCC-CCCEEEECCCCCCCCCCHHHC
Q ss_conf 7221305887659983474785-57342-22179998996468888863462446988-898997008999974303215
Q 001458 536 FPEIVEHMEHLSELHLEGTAIR-GLPLS-IELLSGLVLLNLKNCRSLEILPVTVSNLK-CLRSLKLSGCSKLKKFPEIVR 612 (1074)
Q Consensus 536 ~p~~l~~l~~L~~L~L~~~~i~-~lp~~-l~~l~~L~~L~L~~~~~~~~l~~~l~~l~-~L~~L~Ls~~~~~~~~p~~l~ 612 (1074)
+|..+..+++|+.|+++++.+. .+|.. +..+++|+.|++++|......|..+..++ +|+.|++++|......|..+.
T Consensus 310 ~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~ 389 (768)
T 3rgz_A 310 VPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLC 389 (768)
T ss_dssp CCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTT
T ss_pred CCHHHHCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHHHHCCCCEEECCCCCCCCCCCHHHH
T ss_conf 23677558776677897885257379788724888878848478437623098986322771998627874787676665
Q ss_pred C--CCCCCEEECCCCCCC-CCCCCHHCCCCCCEEECCCCCCCCCCCCHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf 9--988878976797662-0271012048887763699989853530000259888997259768876752125999853
Q 001458 613 S--MKDLSELFLDGTSIK-EVPSSIELLTKLELLNLSDCKNLVRLPSSIIALKSLKTLNLSGCFKLENVPETLGQIESLE 689 (1074)
Q Consensus 613 ~--l~~L~~L~L~~~~l~-~lp~~~~~l~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~L~~c~~l~~~~~~l~~l~~L~ 689 (1074)
. +++|+.|++++|.+. .+|..+..+++|+.|++++|......|..+..+++|+.|++++|...+.+|..+..+++|+
T Consensus 390 ~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 469 (768)
T 3rgz_A 390 QNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLE 469 (768)
T ss_dssp CSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCC
T ss_pred HCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHCCCCCCE
T ss_conf 33247761898977846542487775689879898958846685467774499889898978815471897882877732
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCC-CC
Q ss_conf 99737988899887643332111122222458987899974588158998888887632478889994766898672-13
Q 001458 690 ELDISGTAVPHSTSWYSYIPINLMRKSVALKLPSLSGLCSLRKLNLTDCNLMEGALPSDIGNLCSLKELYLSKNSFV-SL 768 (1074)
Q Consensus 690 ~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~L~~c~~~~~~~p~~l~~l~~L~~L~L~~n~l~-~l 768 (1074)
.|++++|.+.... ...+.++++|+.|++++|.+.. .+|..++.+++|+.|+|++|.+. .+
T Consensus 470 ~L~L~~N~l~~~~------------------p~~l~~l~~L~~L~L~~N~l~~-~~p~~~~~l~~L~~L~L~~N~l~~~~ 530 (768)
T 3rgz_A 470 TLILDFNDLTGEI------------------PSGLSNCTNLNWISLSNNRLTG-EIPKWIGRLENLAILKLSNNSFSGNI 530 (768)
T ss_dssp EEECCSSCCCSCC------------------CGGGGGCTTCCEEECCSSCCCS-CCCGGGGGCTTCCEEECCSSCCEEEC
T ss_pred EEEECCCCCCCCC------------------CHHHHCCCCCCEEECCCCCCCC-CCCHHHHCCCCCCEEECCCCCCCCCC
T ss_conf 9990199513758------------------8788169989989753995189-68768856899998989789433748
Q ss_pred CCCCCCCCCCCEEECCCCCCCCCCC
Q ss_conf 8010024787886056884778688
Q 001458 769 PTSITHLSKLLNIELEDCKRLQSLP 793 (1074)
Q Consensus 769 p~~i~~l~~L~~L~L~~c~~L~~lp 793 (1074)
|..+..+++|+.|++++|+....+|
T Consensus 531 p~~l~~l~~L~~L~Ls~N~l~g~ip 555 (768)
T 3rgz_A 531 PAELGDCRSLIWLDLNTNLFNGTIP 555 (768)
T ss_dssp CGGGGGCTTCCEEECCSSEEESBCC
T ss_pred CHHHCCCCCCCEEECCCCCCCCCCC
T ss_conf 8777088989989898884688279
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=1.00 E-value=1 Score=337.05 Aligned_cols=296 Identities=19% Similarity=0.261 Sum_probs=234.9
Q ss_pred HHHHHHHHHHHCCCCCCEEEEEEECCCCCCHHHHHHHHHHH---HCCCCCCEEEEEECHHHHCCCCHHHHHHHHHHHHHC
Q ss_conf 16899999845189998499999946987089999999988---416455128975013433259959999999999940
Q 001458 2 DSRCEKLRFLMDSGSSDVRMIGICGMGGLGKTTIARVVYDL---ISHEFEASGFLDNVREISSKGGLVSLQRQLLSQLLK 78 (1074)
Q Consensus 2 ~~~~~~l~~ll~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~---~~~~F~~~~~~~~~~~~s~~~~~~~l~~~ll~~l~~ 78 (1074)
+..+++|..+|.....++++|+|+|||||||||||+++|++ ...+|...+|+.++.+.. ........+.++..+..
T Consensus 130 ~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~~~~~~l~~ 208 (1249)
T 3sfz_A 130 KKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQD-KSGLLMKLQNLCMRLDQ 208 (1249)
T ss_dssp HHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCC-HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHCCHHHHHHHCCCEEEEEEECCCC-CHHHHHHHHHHHHHHHH
T ss_conf 99999999998613588777999918988888999998607567886278817999978857-26799999999998655
Q ss_pred CCC---CCCCCCCCHHHHHHHHHCCC--EEEEEECCCCCHHHHHHHHCCCCCCCCCCEEEEEECCHHHHHH-CCCCCEEC
Q ss_conf 358---96345100089999541898--0799980799968777872298888999879999398344534-19983222
Q 001458 79 LAD---NSIWNVFDGIDMLGSRLQRK--KVLLVIDDVVDVKQLQSLAGNREWFGSGSRIIITSRDEHLLKT-HGVDEVYK 152 (1074)
Q Consensus 79 ~~~---~~~~~~~~~~~~i~~~L~~k--r~LlVlDdv~~~~~l~~l~~~~~~~~~gs~iiiTTR~~~v~~~-~~~~~~~~ 152 (1074)
... ....+.......++..+.++ |+||||||||+.++|+.+ ++||+||||||++.++.. .+....++
T Consensus 209 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~~~~~~~~~~~~~~~ 281 (1249)
T 3sfz_A 209 EESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDKSVTDSVMGPKHVVP 281 (1249)
T ss_dssp TCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESSTTTTTTCCSCBCCEE
T ss_pred HCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHH-------CCCCEEEEECCCHHHHHHHCCCCEEEE
T ss_conf 3033347887778999999999735678789999567997788763-------689789999277899876348843798
Q ss_pred CCC-CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHCCCC-------
Q ss_conf 899-996789999999520589997569999999999958990589999732089998899999998750999-------
Q 001458 153 PHG-LNYDEALQLFNMKAFKTYQPLQECVQLSARIIRYAGGLPLALEVLGSFLSGRSVDEWRSTLERLEIEPP------- 224 (1074)
Q Consensus 153 l~~-l~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~l~~~L~~~~~~~w~~~l~~l~~~~~------- 224 (1074)
+.. |+++||++||...++.. .+.+.+.+++|+++|+|+||||+++|+.|+.+. .+|+..+..+.....
T Consensus 282 ~~~~l~~~~a~~l~~~~~~~~---~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~~~l~~l~~~~~~~~~~~~ 357 (1249)
T 3sfz_A 282 VESGLGREKGLEILSLFVNMK---KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAYYLRQLQNKQFKRIRKSS 357 (1249)
T ss_dssp CCSSCCHHHHHHHHHHHHTSC---STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHHHHHHHHHSCCCCCSSCTT
T ss_pred ECCCCCHHHHHHHHHHHHCCC---HHHCCHHHHHHHHHHCCCHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHHHCCCCC
T ss_conf 258888788999999865798---134838899999984997799999999862480-5799999998650443034655
Q ss_pred ----CHHHHHHHHCCCCCCHHHHHHHEEEECCCCCC--CHHHHHHHHHHCCCCCCCCHHHHHCCCCEEEE-CC---EEEH
Q ss_conf ----52677886212467576562420350145888--98899998540799863102142013650872-89---5761
Q 001458 225 ----SEILDILQISFDGLQELEKKIFLDIACFFKGN--DRDYVTNFLEGCGFHPVIGIRVLIEKCLITVH-NN---TLWM 294 (1074)
Q Consensus 225 ----~~i~~~l~~sy~~L~~~~k~~fl~~a~f~~~~--~~~~~~~~~~~~g~~~~~~i~~L~~~~Li~~~-~~---~~~m 294 (1074)
..+..++++||+.|++++|.||+++|+||.++ ..+.++.+|.+.+...+..+..|++++|++.. ++ +|+|
T Consensus 358 ~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~~sl~~~~~~~~~~~~~~ 437 (1249)
T 3sfz_A 358 SYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLETEEVEDILQEFVNKSLLFCNRNGKSFCYYL 437 (1249)
T ss_dssp CTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSCEEEESSSSEEEEC
T ss_pred CCCHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCEECHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCCCEEEEE
T ss_conf 64467799999989986799999999972813799751899999885898889999999997446338963798118996
Q ss_pred HHHHHHHHHHHHHCC
Q ss_conf 799999999996215
Q 001458 295 HDLLQELGQQIVQRQ 309 (1074)
Q Consensus 295 Hdli~~~~~~i~~~~ 309 (1074)
|+++|+++++...++
T Consensus 438 h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 438 HDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp CHHHHHHHHHHTGGG
T ss_pred CHHHHHHHHHHHHHH
T ss_conf 689999987450678
No 4
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=333.89 Aligned_cols=153 Identities=29% Similarity=0.338 Sum_probs=57.8
Q ss_pred CCCEEECCCCCCC-CCCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCHHHCCCCCCCEEECC
Q ss_conf 7659983474785-573422217999899646888886346244698889899700899997430321599888789767
Q 001458 545 HLSELHLEGTAIR-GLPLSIELLSGLVLLNLKNCRSLEILPVTVSNLKCLRSLKLSGCSKLKKFPEIVRSMKDLSELFLD 623 (1074)
Q Consensus 545 ~L~~L~L~~~~i~-~lp~~l~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~L~ 623 (1074)
+|+.|++++|.+. .+|..+..+++|+.|++++|......|..+..+++|+.|++++|......|..+..+++|+.|+++
T Consensus 395 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 474 (768)
T 3rgz_A 395 TLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILD 474 (768)
T ss_dssp CCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECC
T ss_pred CCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHCCCCCCEEEEEC
T ss_conf 76189897784654248777568987989895884668546777449988989897881547189788287773299901
Q ss_pred CCCCC-CCCCCHHCCCCCCEEECCCCCCCCCCCCHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCC
Q ss_conf 97662-027101204888776369998985353000025988899725976887675212599985399737988
Q 001458 624 GTSIK-EVPSSIELLTKLELLNLSDCKNLVRLPSSIIALKSLKTLNLSGCFKLENVPETLGQIESLEELDISGTA 697 (1074)
Q Consensus 624 ~~~l~-~lp~~~~~l~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~L~~c~~l~~~~~~l~~l~~L~~L~L~~~~ 697 (1074)
+|.+. .+|..+..+++|+.|++++|.....+|.++..+++|+.|++++|...+.+|..++.+++|+.|++++|.
T Consensus 475 ~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 549 (768)
T 3rgz_A 475 FNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNL 549 (768)
T ss_dssp SSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSE
T ss_pred CCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCC
T ss_conf 995137588788169989989753995189687688568999989897894337488777088989989898884
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=1.00 E-value=1 Score=319.35 Aligned_cols=486 Identities=19% Similarity=0.216 Sum_probs=380.3
Q ss_pred CEEEEEECCCCCHHHHHCCCCHHHHHCCCCCCEEEECCCCCCC----CCCCCCCCCEEEEECCCCCCCC-CCCC-CCCCC
Q ss_conf 4899995078861124103596777089998669863822799----8322676831999608999999-9887-88981
Q 001458 338 LVEGIVLDNYHHENEVYLCASAKAFSKMTNLRLLKICNLQLPN----GLEYLSNRLRLLGWRGYPLKFL-PSNL-QMDKT 411 (1074)
Q Consensus 338 ~v~~i~l~~~~~~~~~~~~~~~~~f~~~~~Lr~L~l~~~~l~~----~~~~l~~~Lr~L~l~~~~l~~l-p~~~-~l~~L 411 (1074)
.++.+.+...... . +...+|.++++|++|+++++.+.. .+.. ..+|++|+++++.+..+ |..+ .+.+|
T Consensus 34 ~l~~L~Ls~n~i~---~--~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~-l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 107 (606)
T 3t6q_A 34 STECLEFSFNVLP---T--IQNTTFSRLINLTFLDLTRCQIYWIHEDTFQS-QHRLDTLVLTANPLIFMAETALSGPKAL 107 (606)
T ss_dssp TCCEEECTTCCCS---E--ECTTTSTTCTTCSEEECTTCCCCEECTTTTTT-CTTCCEEECTTCCCSEECTTTTSSCTTC
T ss_pred CCCEEECCCCCCC---C--CCHHHHCCCCCCEEEECCCCCCCEECHHHCCC-CCCCCEEECCCCCCCCCCHHHHCCCCCC
T ss_conf 6758981587347---1--79667256766528978898355248511368-4336764488985654586552344215
Q ss_pred EEEECCCCCCCCC-CCCCCCCCCCCEEECCCCCCCC-CCCCCCCCCCCCEEEECCCCCCCCCCCCHHCCCCCC--EEECC
Q ss_conf 0999576785332-3366688898499823898997-799989998875897038656542370000588753--99656
Q 001458 412 IEIYMCYSRIGEL-WKGIKHLDKLKVMILSHSENLI-RMPDFTGAPNLEKLILEGCTRLYEIHPSLLLHNKLI--ILNMK 487 (1074)
Q Consensus 412 ~~L~l~~s~i~~l-~~~~~~l~~L~~L~Ls~~~~~~-~~~~~~~l~~L~~L~L~~c~~l~~~~~~i~~l~~L~--~L~L~ 487 (1074)
++|+++++.+..+ +..+..+++|++|+++++.... ..+.+..+++|++|++++|......+..++.+++|+ .|+++
T Consensus 108 ~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~ 187 (606)
T 3t6q_A 108 KHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLN 187 (606)
T ss_dssp CEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECT
T ss_pred CEEECCCCCCCCCCCCHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHHHHCCCCEEEEECC
T ss_conf 37652126766578101223782238988798341147654568765687776568445549656332215640389667
Q ss_pred CCCCCCCCCCCCCCCCCCCEECCCCC--------------------------------CCCCCCC--CCCEEECCCCCCC
Q ss_conf 88899767841012546701167676--------------------------------2123798--7869954599899
Q 001458 488 DCTSLITLPGKILMKSLEKLNLKSLP--------------------------------TTISGLK--CLSTLDVSGDLKF 533 (1074)
Q Consensus 488 ~c~~l~~lp~~~~l~~L~~L~l~~l~--------------------------------~~~~~l~--~L~~L~L~~~~~~ 533 (1074)
+|......|..+....|+.+++.... ..+..+. .|+.|+++++...
T Consensus 188 ~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~ 267 (606)
T 3t6q_A 188 GNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFF 267 (606)
T ss_dssp TCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCS
T ss_pred CCCCCCCCHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCHHHEECHHHCCCCCCCCCHHHHCHHHCCCEEEEEEECCCCC
T ss_conf 98147548667300100135567726677776513356442200201102641226866743032075059994457658
Q ss_pred CCCCHHHHCCCCCCEEECCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCH-HHC
Q ss_conf 8672213058876599834747855734222179998996468888863462446988898997008999974303-215
Q 001458 534 REFPEIVEHMEHLSELHLEGTAIRGLPLSIELLSGLVLLNLKNCRSLEILPVTVSNLKCLRSLKLSGCSKLKKFPE-IVR 612 (1074)
Q Consensus 534 ~~~p~~l~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~Ls~~~~~~~~p~-~l~ 612 (1074)
...+..+..+++|+.|+++++.+..+|..+..+++|+.|++++|......+..+..+++|+.|++++|.....++. .+.
T Consensus 268 ~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 347 (606)
T 3t6q_A 268 NISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLE 347 (606)
T ss_dssp SCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTT
T ss_pred CCCHHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHH
T ss_conf 55777744566788895628826777821416546888977168768676023301576898889899744434624550
Q ss_pred CCCCCCEEECCCCCCCCC---CCCHHCCCCCCEEECCCCCCCCCCCCHHCCCCCCCEEECCCCCCCCCCCC-CCCCCCCC
Q ss_conf 998887897679766202---71012048887763699989853530000259888997259768876752-12599985
Q 001458 613 SMKDLSELFLDGTSIKEV---PSSIELLTKLELLNLSDCKNLVRLPSSIIALKSLKTLNLSGCFKLENVPE-TLGQIESL 688 (1074)
Q Consensus 613 ~l~~L~~L~L~~~~l~~l---p~~~~~l~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~L~~c~~l~~~~~-~l~~l~~L 688 (1074)
.+++|+.|++++|.+..+ +..+..+++|+.|++++|......+..+..+++|+.|++++|......+. .+..+++|
T Consensus 348 ~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 427 (606)
T 3t6q_A 348 NLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLL 427 (606)
T ss_dssp TCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTC
T ss_pred CCCCCCEEECCCCCCCCCCCCCHHCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCCHHHHCCCCC
T ss_conf 66758988788996664567522105678889898989967757888734774577687888867775652124176558
Q ss_pred CEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCC--CCCCCCCCCCCEEECCCCCCC
Q ss_conf 399737988899887643332111122222458987899974588158998888887--632478889994766898672
Q 001458 689 EELDISGTAVPHSTSWYSYIPINLMRKSVALKLPSLSGLCSLRKLNLTDCNLMEGAL--PSDIGNLCSLKELYLSKNSFV 766 (1074)
Q Consensus 689 ~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~L~~c~~~~~~~--p~~l~~l~~L~~L~L~~n~l~ 766 (1074)
+.|++++|.+.... ...+..+++|+.|++++|.+....+ +..+..+++|+.|++++|.+.
T Consensus 428 ~~L~l~~n~l~~~~------------------~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~ 489 (606)
T 3t6q_A 428 KVLNLSHSLLDISS------------------EQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLS 489 (606)
T ss_dssp CEEECTTCCCBTTC------------------TTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCC
T ss_pred CEEECCCCCCCCCC------------------HHHHHCCCCCCEEECCCCCCCCCCCCCCHHHCCCCCCCEEECCCCCCC
T ss_conf 88989898557768------------------778737887888989899888543454312404887668879999667
Q ss_pred CC-CCCCCCCCCCCEEECCCCCCCCCCCCC---CCCCCEEEECCCCCCCCCHHHHCCCCCCCCCCCCCCHHHHCCCCHHH
Q ss_conf 13-801002478788605688477868888---88842675137645420100010146754222200024330792248
Q 001458 767 SL-PTSITHLSKLLNIELEDCKRLQSLPQL---PPNIRQVRVNGCASLVTLLDALKLCKSDSTMIACLDSLKLLGNKSLA 842 (1074)
Q Consensus 767 ~l-p~~i~~l~~L~~L~L~~c~~L~~lp~l---p~~L~~L~i~~C~~L~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 842 (1074)
.+ |..+..+++|+.|++++|+.....|+. .++| .|++++| .++.++... +...+.++.+++.+|+..|
T Consensus 490 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N-~l~~~~~~~------~~~l~~L~~L~l~~N~~~c 561 (606)
T 3t6q_A 490 SIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASN-HISIILPSL------LPILSQQRTINLRQNPLDC 561 (606)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSS-CCCCCCGGG------HHHHHTSSEEECTTCCEEC
T ss_pred CCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCC-EEECCCC-CCCCCCHHH------CCCCCCCCEEECCCCCCCC
T ss_conf 0686463265678889898980686896684756651-8987689-414268766------2567787889677998616
Q ss_pred HHHHHHHHHHHCC
Q ss_conf 9999999975115
Q 001458 843 FSMLREYLEAVSN 855 (1074)
Q Consensus 843 ~~~l~~~~~~~~~ 855 (1074)
.|....+..|...
T Consensus 562 ~c~~~~~~~w~~~ 574 (606)
T 3t6q_A 562 TCSNIYFLEWYKE 574 (606)
T ss_dssp SGGGHHHHHHHHH
T ss_pred CCCCHHHHHHHHH
T ss_conf 6775789999973
No 6
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=1.00 E-value=1 Score=314.24 Aligned_cols=297 Identities=15% Similarity=0.161 Sum_probs=219.7
Q ss_pred HHHHHHHHHHHCCCCCCEEEEEEECCCCCCHHHHHHHHHH--HHCCCCCC-EEEEEECHHHHCCCCHHHHHHHHHHHHHC
Q ss_conf 1689999984518999849999994698708999999998--84164551-28975013433259959999999999940
Q 001458 2 DSRCEKLRFLMDSGSSDVRMIGICGMGGLGKTTIARVVYD--LISHEFEA-SGFLDNVREISSKGGLVSLQRQLLSQLLK 78 (1074)
Q Consensus 2 ~~~~~~l~~ll~~~~~~~~~v~I~G~gGiGKTtLA~~v~~--~~~~~F~~-~~~~~~~~~~s~~~~~~~l~~~ll~~l~~ 78 (1074)
+..+++|.++|.. .+++++|+|+||||+||||||+++|+ +++.+|+. ++|+. ++.......+...++..+..
T Consensus 134 e~eLeeL~elL~~-~d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVs----Vs~~~d~~~IL~~Ll~lL~~ 208 (1221)
T 1vt4_I 134 LQPYLKLRQALLE-LRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN----LKNCNSPETVLEMLQKLLYQ 208 (1221)
T ss_dssp HHHHHHHHHHHHH-CCSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEE----CCCSSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHC-CCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEE----ECCCCCHHHHHHHHHHHHHH
T ss_conf 8999999999743-589718999769996679999999971498874899389998----28999999999999999862
Q ss_pred CC---CCC-------CCCCCCHHHHHHHHH---CCCEEEEEECCCCCHHHHHHHHCCCCCCCCCCEEEEEECCHHHHHHC
Q ss_conf 35---896-------345100089999541---89807999807999687778722988889998799993983445341
Q 001458 79 LA---DNS-------IWNVFDGIDMLGSRL---QRKKVLLVIDDVVDVKQLQSLAGNREWFGSGSRIIITSRDEHLLKTH 145 (1074)
Q Consensus 79 ~~---~~~-------~~~~~~~~~~i~~~L---~~kr~LlVlDdv~~~~~l~~l~~~~~~~~~gs~iiiTTR~~~v~~~~ 145 (1074)
.. ... ..+.......+++.| .++|+||||||||+.++|+.+. +||+||||||++.++..+
T Consensus 209 i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~-------pGSRILVTTRd~~Va~~l 281 (1221)
T 1vt4_I 209 IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN-------LSCKILLTTRFKQVTDFL 281 (1221)
T ss_dssp HCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHH-------SSCCEEEECSCSHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHC-------CCEEEEEECCCHHHHHHC
T ss_conf 2721022001346799999999999999998504788799871868189998647-------982999944373799866
Q ss_pred CCCCEECCC------CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCC--CHHHHHHHHH
Q ss_conf 998322289------99967899999995205899975699999999999589905899997320899--9889999999
Q 001458 146 GVDEVYKPH------GLNYDEALQLFNMKAFKTYQPLQECVQLSARIIRYAGGLPLALEVLGSFLSGR--SVDEWRSTLE 217 (1074)
Q Consensus 146 ~~~~~~~l~------~l~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~l~~~L~~~--~~~~w~~~l~ 217 (1074)
.....|+++ +|+.+||++||+++. ... ..++..++ |+|+||||+++|+.|+++ +..+|+..
T Consensus 282 ~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~-g~~-----~eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW~~~-- 350 (1221)
T 1vt4_I 282 SAATTTHISLDHHSMTLTPDEVKSLLLKYL-DCR-----PQDLPREV---LTTNPRRLSIIAESIRDGLATWDNWKHV-- 350 (1221)
T ss_dssp HHHSSCEEEECSSSSCCCHHHHHHHHHHHH-CCC-----TTTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHHHHHC--
T ss_pred CCCEEEEECCCCCCCCCCHHHHHHHHHHHC-CCC-----HHHHHHHH---HCCCHHHHHHHHHHHHCCCCCHHHHHCC--
T ss_conf 897089946865568969999999999974-998-----89999999---6989999999999984889979998669--
Q ss_pred HHHCCCCCHHHHHHHHCCCCCCHHH-HHHHEEEECCCCCCC--HHHHHHHHHHCCC-CCCCCHHHHHCCCCEEEE--CCE
Q ss_conf 8750999526778862124675765-624203501458889--8899998540799-863102142013650872--895
Q 001458 218 RLEIEPPSEILDILQISFDGLQELE-KKIFLDIACFFKGND--RDYVTNFLEGCGF-HPVIGIRVLIEKCLITVH--NNT 291 (1074)
Q Consensus 218 ~l~~~~~~~i~~~l~~sy~~L~~~~-k~~fl~~a~f~~~~~--~~~~~~~~~~~g~-~~~~~i~~L~~~~Li~~~--~~~ 291 (1074)
....|..+++.||+.|++++ |.||+++|+||.++. .+.+..+|.+.|. .....++.|++++|++.. .++
T Consensus 351 -----~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeGeedAe~~L~eLvdRSLLq~d~~~~r 425 (1221)
T 1vt4_I 351 -----NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKEST 425 (1221)
T ss_dssp -----SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSCSHHHHHHHHHHHTSSSSSBCSSSSE
T ss_pred -----CHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCEEEECCCCE
T ss_conf -----861899999999984889999999999717799998779999987667788999999999996198898689998
Q ss_pred EEHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHC
Q ss_conf 7617999999999962159213474012568046899821
Q 001458 292 LWMHDLLQELGQQIVQRQSPEELGKRSRLWKEEEVCHVLT 331 (1074)
Q Consensus 292 ~~mHdli~~~~~~i~~~~~~~~~~~~~rl~~~~~~~~~l~ 331 (1074)
|+|||++++++... ...+..+.|+......+.++.
T Consensus 426 YrMHDLllELr~~~-----~e~~alHrRLvd~Y~~~~vf~ 460 (1221)
T 1vt4_I 426 ISIPSIYLELKVKL-----ENEYALHRSIVDHYNIPKTFD 460 (1221)
T ss_dssp EBCCCHHHHHHHHH-----SCCTTHHHHHHHHHHHHHHCC
T ss_pred EEEHHHHHHHHCCC-----CCHHHHHHHHHHHHHHHCCCC
T ss_conf 98609999985689-----859999999999998548588
No 7
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=1.00 E-value=1 Score=312.59 Aligned_cols=480 Identities=18% Similarity=0.155 Sum_probs=344.7
Q ss_pred CCEEEEEECCCCCHHHHHCCCCHHHHHCCCCCCEEEECCCCCCCC---CCCCCCCCEEEEECCCCCCCC-CCCC-CCCCC
Q ss_conf 548999950788611241035967770899986698638227998---322676831999608999999-9887-88981
Q 001458 337 ELVEGIVLDNYHHENEVYLCASAKAFSKMTNLRLLKICNLQLPNG---LEYLSNRLRLLGWRGYPLKFL-PSNL-QMDKT 411 (1074)
Q Consensus 337 ~~v~~i~l~~~~~~~~~~~~~~~~~f~~~~~Lr~L~l~~~~l~~~---~~~l~~~Lr~L~l~~~~l~~l-p~~~-~l~~L 411 (1074)
..++.+.+...... . +...+|.++++|+.|+++++.+..- ...-...|++|+++++.+..+ |..+ .+.+|
T Consensus 32 ~~l~~L~Ls~n~l~---~--~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L 106 (606)
T 3vq2_A 32 SSTKNIDLSFNPLK---I--LKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSL 106 (606)
T ss_dssp TTCCEEECTTSCCC---E--ECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTC
T ss_pred CCCCEEECCCCCCC---E--ECHHHCCCCCCCCEEECCCCCCCCCCHHHHHCHHHCCEEECCCCCCCCCCHHHCCCCCCC
T ss_conf 87678878889757---7--375455577667488688773664397773060106886787985630485220786537
Q ss_pred EEEECCCCCCCCCC-CCCCCCCCCCEEECCCCCCCC-CCCC-CCCCCCCCEEEECCCCCCCCCCCCHHCCCCCC----EE
Q ss_conf 09995767853323-366688898499823898997-7999-89998875897038656542370000588753----99
Q 001458 412 IEIYMCYSRIGELW-KGIKHLDKLKVMILSHSENLI-RMPD-FTGAPNLEKLILEGCTRLYEIHPSLLLHNKLI----IL 484 (1074)
Q Consensus 412 ~~L~l~~s~i~~l~-~~~~~l~~L~~L~Ls~~~~~~-~~~~-~~~l~~L~~L~L~~c~~l~~~~~~i~~l~~L~----~L 484 (1074)
++|+++++.+..++ ..+..+++|++|+++++.... .+|. +..+++|++|++++|......+..++.+.+|+ .|
T Consensus 107 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L 186 (606)
T 3vq2_A 107 ENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSL 186 (606)
T ss_dssp CEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEE
T ss_pred CEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCEECHHHHHHCCCCCEEECCCCCCEECCHHHHHHHHCCCCCCCEE
T ss_conf 88870377555445113489887798968788523253068673267777887668853105733412120342002430
Q ss_pred ECCCCCCCCCCCCC-CCCCCCCCEECCC-------CCCCCCCCCCCCEEEC-----------------------------
Q ss_conf 65688899767841-0125467011676-------7621237987869954-----------------------------
Q 001458 485 NMKDCTSLITLPGK-ILMKSLEKLNLKS-------LPTTISGLKCLSTLDV----------------------------- 527 (1074)
Q Consensus 485 ~L~~c~~l~~lp~~-~~l~~L~~L~l~~-------l~~~~~~l~~L~~L~L----------------------------- 527 (1074)
+++++.. ..++.. +...+|+.+++.. .+..+..++.|+.+.+
T Consensus 187 ~l~~n~l-~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~ 265 (606)
T 3vq2_A 187 DMSLNPI-DFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDE 265 (606)
T ss_dssp ECTTCCC-CEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEE
T ss_pred ECCCCCC-CEECCCCCCCCEEEEEECCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHH
T ss_conf 0468975-325711056760433524678561667788860266565231411110367741026817766665434745
Q ss_pred ----CCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCC
Q ss_conf ----5998998672213058876599834747855734222179998996468888863462446988898997008999
Q 001458 528 ----SGDLKFREFPEIVEHMEHLSELHLEGTAIRGLPLSIELLSGLVLLNLKNCRSLEILPVTVSNLKCLRSLKLSGCSK 603 (1074)
Q Consensus 528 ----~~~~~~~~~p~~l~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~Ls~~~~ 603 (1074)
..+...+.+|. +..+++|+.|+++++.+..+| .+..+++|+.|++.+|.. ..+| .+ .+++|+.|++++|..
T Consensus 266 l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~l~-~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~ 340 (606)
T 3vq2_A 266 FRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIKYLE-DVPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKG 340 (606)
T ss_dssp EEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCCCCC-CCCTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSS
T ss_pred EECCCCCCCCCCCCC-CCCCCCCCEEEECCCCCHHHH-HCCCCCCCCEEECCCCCC-CCCC-CC-CCCCCCEEECCCCCC
T ss_conf 012366555543222-354887898771476604435-433401177897646667-6546-67-887556445447868
Q ss_pred CCCCCHHHCCCCCCCEEECCCCCCCCC---CCCHHCCCCCCEEECCCCCCCCCCCCHHCCCCCCCEEECCCCCCCCCCC-
Q ss_conf 974303215998887897679766202---7101204888776369998985353000025988899725976887675-
Q 001458 604 LKKFPEIVRSMKDLSELFLDGTSIKEV---PSSIELLTKLELLNLSDCKNLVRLPSSIIALKSLKTLNLSGCFKLENVP- 679 (1074)
Q Consensus 604 ~~~~p~~l~~l~~L~~L~L~~~~l~~l---p~~~~~l~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~L~~c~~l~~~~- 679 (1074)
.... .+..+++|+.|++++|.+..+ +..+..+++|+.|++++|. +..+|..+..+++|+.|++++|......+
T Consensus 341 ~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 417 (606)
T 3vq2_A 341 SISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG-AIIMSANFMGLEELQHLDFQHSTLKRVTEF 417 (606)
T ss_dssp CEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCS-EEEECCCCTTCTTCCEEECTTSEEESTTTT
T ss_pred CCCH--HHCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCCEEECCCCC-CCCCHHHCCCCCCCCEEECCCCCCCCCCCH
T ss_conf 5310--0024898887977587368775201221467755486788995-300055406888889658988705875376
Q ss_pred CCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 21259998539973798889988764333211112222245898789997458815899888888763247888999476
Q 001458 680 ETLGQIESLEELDISGTAVPHSTSWYSYIPINLMRKSVALKLPSLSGLCSLRKLNLTDCNLMEGALPSDIGNLCSLKELY 759 (1074)
Q Consensus 680 ~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~L~~c~~~~~~~p~~l~~l~~L~~L~ 759 (1074)
..+..+++|+.|++++|.+.... ...+.++++|+.|++++|.+....+|..+..+++|+.|+
T Consensus 418 ~~~~~l~~L~~L~l~~n~l~~~~------------------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 479 (606)
T 3vq2_A 418 SAFLSLEKLLYLDISYTNTKIDF------------------DGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLD 479 (606)
T ss_dssp TTTTTCTTCCEEECTTSCCEECC------------------TTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEE
T ss_pred HHHHCCCCCCEEECCCCCCCCCC------------------HHHHCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCCEEE
T ss_conf 45646213788989689787433------------------555347787898989898379854677604578899898
Q ss_pred CCCCCCCCC-CCCCCCCCCCCEEECCCCCCCCCCCC---CCCCCCEEEECCCCCCCCCHHHHCCCCCCCCCCCCCCHHHH
Q ss_conf 689867213-80100247878860568847786888---88884267513764542010001014675422220002433
Q 001458 760 LSKNSFVSL-PTSITHLSKLLNIELEDCKRLQSLPQ---LPPNIRQVRVNGCASLVTLLDALKLCKSDSTMIACLDSLKL 835 (1074)
Q Consensus 760 L~~n~l~~l-p~~i~~l~~L~~L~L~~c~~L~~lp~---lp~~L~~L~i~~C~~L~~l~~~~~~~~~~~~~~~~l~~l~~ 835 (1074)
+++|.++.+ |..+..+++|+.|++++|+.....|. -.++|+.|++++|. ++.++... ......++.+++
T Consensus 480 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~p~~~------~~l~~~L~~l~l 552 (606)
T 3vq2_A 480 LSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNR-IETSKGIL------QHFPKSLAFFNL 552 (606)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSC-CCCEESCG------GGSCTTCCEEEC
T ss_pred CCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCCCEEECCCCC-CCCCCHHH------HHHCCCCCEEEC
T ss_conf 98885776486561546468989898995787487770688768988898983-76668767------521021748876
Q ss_pred CCCCHHHHHHHHHHHHHHCC
Q ss_conf 07922489999999975115
Q 001458 836 LGNKSLAFSMLREYLEAVSN 855 (1074)
Q Consensus 836 ~~~~~~~~~~l~~~~~~~~~ 855 (1074)
.+|+..|.+.+.++.+|...
T Consensus 553 ~~N~~~c~c~~~~~~~~l~~ 572 (606)
T 3vq2_A 553 TNNSVACICEHQKFLQWVKE 572 (606)
T ss_dssp CSCCCCCSSTTHHHHTTTTT
T ss_pred CCCCCCCCCCCHHHHHHHHC
T ss_conf 28986647764899999872
No 8
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=303.30 Aligned_cols=473 Identities=19% Similarity=0.210 Sum_probs=237.5
Q ss_pred CEEEEEECCCCCHHHHHCCCCHHHHHCCCCCCEEEECCCCCC-----CCCCCCCCCCEEEEECCCCCCCC-CCCC-CCCC
Q ss_conf 489999507886112410359677708999866986382279-----98322676831999608999999-9887-8898
Q 001458 338 LVEGIVLDNYHHENEVYLCASAKAFSKMTNLRLLKICNLQLP-----NGLEYLSNRLRLLGWRGYPLKFL-PSNL-QMDK 410 (1074)
Q Consensus 338 ~v~~i~l~~~~~~~~~~~~~~~~~f~~~~~Lr~L~l~~~~l~-----~~~~~l~~~Lr~L~l~~~~l~~l-p~~~-~l~~ 410 (1074)
.++.+.+...... . +...+|..+++|++|+++++... ..+..+ ..|++|+++++.+..+ |..| .+.+
T Consensus 25 ~l~~LdLs~N~i~---~--i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L-~~L~~L~Ls~N~l~~~~p~~~~~l~~ 98 (844)
T 3j0a_A 25 TTERLLLSFNYIR---T--VTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNL-PNLRILDLGSSKIYFLHPDAFQGLFH 98 (844)
T ss_dssp TCCEEEEESCCCC---E--ECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSC-TTCCEEECTTCCCCEECTTSSCSCSS
T ss_pred CCCEEECCCCCCC---C--CCHHHCCCCCCCEEEECCCCCCCCCCCHHHHCCC-CCCCEEECCCCCCCCCCHHHCCCCCC
T ss_conf 8688888778678---3--2966776621370886789977444197785378-77888879899585319767157866
Q ss_pred CEEEECCCCCCCC-CCCC--CCCCCCCCEEECCCCCCCCCCC--CCCCCCCCCEEEECCCCCCCCCCCCHHCC--CCCCE
Q ss_conf 1099957678533-2336--6688898499823898997799--98999887589703865654237000058--87539
Q 001458 411 TIEIYMCYSRIGE-LWKG--IKHLDKLKVMILSHSENLIRMP--DFTGAPNLEKLILEGCTRLYEIHPSLLLH--NKLII 483 (1074)
Q Consensus 411 L~~L~l~~s~i~~-l~~~--~~~l~~L~~L~Ls~~~~~~~~~--~~~~l~~L~~L~L~~c~~l~~~~~~i~~l--~~L~~ 483 (1074)
|++|+++++.+.. ++.. +..+++|+.|++++|......+ .|..+++|++|++++|......+..+..+ ++|+.
T Consensus 99 L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~ 178 (844)
T 3j0a_A 99 LFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSF 178 (844)
T ss_dssp CCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCC
T ss_pred CCEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHCCCCCEEECCCCCCCEECHHHCCCCCCCCCCE
T ss_conf 58701767889734046764556679998889878642325665576388989898989847766788753556775035
Q ss_pred EECCCCCCCCCCCCCC-CCC------CCCCEECCCC------CC------------------------------------
Q ss_conf 9656888997678410-125------4670116767------62------------------------------------
Q 001458 484 LNMKDCTSLITLPGKI-LMK------SLEKLNLKSL------PT------------------------------------ 514 (1074)
Q Consensus 484 L~L~~c~~l~~lp~~~-~l~------~L~~L~l~~l------~~------------------------------------ 514 (1074)
|++++|......|..+ .+. .|+.++++.- +.
T Consensus 179 L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~ 258 (844)
T 3j0a_A 179 FSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQN 258 (844)
T ss_dssp CEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGT
T ss_pred EECCCCCCCCCCCCCHHHCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCCCCCCCCHH
T ss_conf 78978866655455332237722357400796578868656778887642744100112121223466444566889855
Q ss_pred CCCC--CCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCC-CHHHHCCCCCCEEECCCCCCCCCCCCCCCCCC
Q ss_conf 1237--98786995459989986722130588765998347478557-34222179998996468888863462446988
Q 001458 515 TISG--LKCLSTLDVSGDLKFREFPEIVEHMEHLSELHLEGTAIRGL-PLSIELLSGLVLLNLKNCRSLEILPVTVSNLK 591 (1074)
Q Consensus 515 ~~~~--l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~i~~l-p~~l~~l~~L~~L~L~~~~~~~~l~~~l~~l~ 591 (1074)
.+.. .++|+.|++++|......+..+..+++|+.|++++|.+..+ |..+..+++|+.|++++|......+..+..++
T Consensus 259 ~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 338 (844)
T 3j0a_A 259 TFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLP 338 (844)
T ss_dssp TTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCT
T ss_pred HHHCCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCC
T ss_conf 65255547861898979945515863452589999998979818987968836888999898989978851878846899
Q ss_pred CCCEEEECCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCHHCCCCCCEEECCCCCCCCCCCCHHCCCCCCCEEECCC
Q ss_conf 89899700899997430321599888789767976620271012048887763699989853530000259888997259
Q 001458 592 CLRSLKLSGCSKLKKFPEIVRSMKDLSELFLDGTSIKEVPSSIELLTKLELLNLSDCKNLVRLPSSIIALKSLKTLNLSG 671 (1074)
Q Consensus 592 ~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~L~~ 671 (1074)
+|+.|++++|......+..+..+++|+.|++++|.+..++. +++|+.|.+++|... .+|.. ..+++.|++++
T Consensus 339 ~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~----~~~L~~L~l~~N~l~-~l~~~---~~~l~~L~ls~ 410 (844)
T 3j0a_A 339 KVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHF----IPSIPDIFLSGNKLV-TLPKI---NLTANLIHLSE 410 (844)
T ss_dssp TCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSS----CCSCSEEEEESCCCC-CCCCC---CTTCCEEECCS
T ss_pred CCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCC----CCCCCHHCCCCCCCC-CCCCC---CCCCCEEECCC
T ss_conf 99989898998776286661378889998898997786168----898232005899723-14554---55431221456
Q ss_pred CCCCCC-CCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCC----CCCC
Q ss_conf 768876-75212599985399737988899887643332111122222458987899974588158998888----8876
Q 001458 672 CFKLEN-VPETLGQIESLEELDISGTAVPHSTSWYSYIPINLMRKSVALKLPSLSGLCSLRKLNLTDCNLME----GALP 746 (1074)
Q Consensus 672 c~~l~~-~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~L~~c~~~~----~~~p 746 (1074)
|..... .+..+..+++|+.|++++|.+..... ...+..+++|+.|++++|.+.. +..+
T Consensus 411 N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~-----------------~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~ 473 (844)
T 3j0a_A 411 NRLENLDILYFLLRVPHLQILILNQNRFSSCSG-----------------DQTPSENPSLEQLFLGENMLQLAWETELCW 473 (844)
T ss_dssp CCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCS-----------------SSSSCSCTTCCBCEEESCCCSSSCCSCCCS
T ss_pred CCCCCCCHHHHHHCCCCCCEEECCCCCCCCCCC-----------------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCH
T ss_conf 753457556665127766666677871255554-----------------333566873100247777364410135535
Q ss_pred CCCCCCCCCCEEECCCCCCCCCCC-CCCCCCCCCEEECCCCCCCCCCCC--CCCCCCEEEECCCCCCCCCHHHHCCCCCC
Q ss_conf 324788899947668986721380-100247878860568847786888--88884267513764542010001014675
Q 001458 747 SDIGNLCSLKELYLSKNSFVSLPT-SITHLSKLLNIELEDCKRLQSLPQ--LPPNIRQVRVNGCASLVTLLDALKLCKSD 823 (1074)
Q Consensus 747 ~~l~~l~~L~~L~L~~n~l~~lp~-~i~~l~~L~~L~L~~c~~L~~lp~--lp~~L~~L~i~~C~~L~~l~~~~~~~~~~ 823 (1074)
..+..+++|+.|+|++|.++.+|. .+..+++|+.|+|++| .+..+|. ++++|+.|+++++ .++.++.
T Consensus 474 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~~~L~~L~Ls~N-~l~~~~~-------- 543 (844)
T 3j0a_A 474 DVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSN-RLTVLSHNDLPANLEILDISRN-QLLAPNP-------- 543 (844)
T ss_dssp SCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESC-CCSSCCCCCCCSCCCEEEEEEE-CCCCCCS--------
T ss_pred HHHCCCCCCCEEECCCCCCCCCCHHHCCCHHHHHEEECCCC-CCCCCCHHHHHCCCCEEECCCC-CCCCCCH--------
T ss_conf 55447553657778898565539557045012215699999-7874571011004558889888-4788896--------
Q ss_pred CCCCCCCCHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 42222000243307922489999999975
Q 001458 824 STMIACLDSLKLLGNKSLAFSMLREYLEA 852 (1074)
Q Consensus 824 ~~~~~~l~~l~~~~~~~~~~~~l~~~~~~ 852 (1074)
..+..++.+++.+|+..|.|.+..+..|
T Consensus 544 -~~~~~L~~l~l~~Np~~C~c~~~~f~~~ 571 (844)
T 3j0a_A 544 -DVFVSLSVLDITHNKFICECELSTFINW 571 (844)
T ss_dssp -CCCSSCCEEEEEEECCCCSSSCCSHHHH
T ss_pred -HHHCCCCEEEECCCCCCCCCCCHHHHHH
T ss_conf -6837768899319970253661899999
No 9
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=1.00 E-value=1 Score=298.65 Aligned_cols=419 Identities=14% Similarity=0.159 Sum_probs=208.3
Q ss_pred CCEEEEEECCCCCHHHHHCCCCHHHHHCCCCCCEEEECCCCCCCCC--C-----------CCCCCCEEEEECCCCCC-CC
Q ss_conf 5489999507886112410359677708999866986382279983--2-----------26768319996089999-99
Q 001458 337 ELVEGIVLDNYHHENEVYLCASAKAFSKMTNLRLLKICNLQLPNGL--E-----------YLSNRLRLLGWRGYPLK-FL 402 (1074)
Q Consensus 337 ~~v~~i~l~~~~~~~~~~~~~~~~~f~~~~~Lr~L~l~~~~l~~~~--~-----------~l~~~Lr~L~l~~~~l~-~l 402 (1074)
.+|.++.+...... ..+. .+|..+++|+.|+++++.+..+. . .....+| +++..+.+. ..
T Consensus 81 ~~V~~L~L~~~~l~----g~lp-~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~-l~l~~~~l~~~~ 154 (636)
T 4eco_A 81 GRVTGLSLEGFGAS----GRVP-DAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMR-MHYQKTFVDYDP 154 (636)
T ss_dssp CCEEEEECTTSCCE----EEEC-GGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHH-THHHHHHTCCCG
T ss_pred CCEEEEEECCCCCC----CCCC-HHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH-HHHHHHHHCCCC
T ss_conf 97889984276657----7288-57856845118987688512377433453235673388888887-657775541170
Q ss_pred CCCC--------------------CCCCCEEEE--CCCCCCCCCCCCCCCCCCCCEEECCCCCCCCC-------------
Q ss_conf 9887--------------------889810999--57678533233666888984998238989977-------------
Q 001458 403 PSNL--------------------QMDKTIEIY--MCYSRIGELWKGIKHLDKLKVMILSHSENLIR------------- 447 (1074)
Q Consensus 403 p~~~--------------------~l~~L~~L~--l~~s~i~~l~~~~~~l~~L~~L~Ls~~~~~~~------------- 447 (1074)
|..+ ....+..+. ...+++..+|..+..+++|++|+++++.....
T Consensus 155 ~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~ 234 (636)
T 4eco_A 155 REDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEY 234 (636)
T ss_dssp GGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHH
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCH
T ss_conf 66677887777642755465410133442130010136777507877725647878988688236642322122222100
Q ss_pred ----CC-CCC--CCCCCCEEEECCCCCCCCCCCCHHCCCCCCEEECCCCCCCC--CCCCCC-CC------CCCCCEECC-
Q ss_conf ----99-989--99887589703865654237000058875399656888997--678410-12------546701167-
Q 001458 448 ----MP-DFT--GAPNLEKLILEGCTRLYEIHPSLLLHNKLIILNMKDCTSLI--TLPGKI-LM------KSLEKLNLK- 510 (1074)
Q Consensus 448 ----~~-~~~--~l~~L~~L~L~~c~~l~~~~~~i~~l~~L~~L~L~~c~~l~--~lp~~~-~l------~~L~~L~l~- 510 (1074)
+| .+. .+++|++|++++|.....+|..++.+++|+.|++++|..+. .+|..+ .+ ++|+.|++.
T Consensus 235 ~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~ 314 (636)
T 4eco_A 235 AQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGY 314 (636)
T ss_dssp HHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCS
T ss_pred HCCCCCHHHHHCCCCCCCEEEECCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEECCC
T ss_conf 10248632200446878889804885776283888349997889784798876653357887543046578888898979
Q ss_pred ----CCCC--CCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCHHHHCCCC-CCEEECCCCCCCCCC
Q ss_conf ----6762--123798786995459989986722130588765998347478557342221799-989964688888634
Q 001458 511 ----SLPT--TISGLKCLSTLDVSGDLKFREFPEIVEHMEHLSELHLEGTAIRGLPLSIELLSG-LVLLNLKNCRSLEIL 583 (1074)
Q Consensus 511 ----~l~~--~~~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~i~~lp~~l~~l~~-L~~L~L~~~~~~~~l 583 (1074)
.+|. .+..+++|+.|++++|...+.+| .+..+++|+.|++++|.+..+|..+..+++ |+.|++++|... .+
T Consensus 315 n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~l 392 (636)
T 4eco_A 315 NNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YI 392 (636)
T ss_dssp SCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS-SC
T ss_pred CCCCCCCCHHHHCCCCCCCEEECCCCCCCCCHH-HHCCCCCCCEEECCCCCCCCCCHHHHHHCCCCCEEECCCCCCC-CC
T ss_conf 937766765554257888989690880705166-6478898898989899403033756510236868985298275-44
Q ss_pred CCCCCCCC--CCCEEEECCCCCCCCCCHHHC-------CCCCCCEEECCCCCCCCCCCCHH-CCCCCCEEECCCCCCCCC
Q ss_conf 62446988--898997008999974303215-------99888789767976620271012-048887763699989853
Q 001458 584 PVTVSNLK--CLRSLKLSGCSKLKKFPEIVR-------SMKDLSELFLDGTSIKEVPSSIE-LLTKLELLNLSDCKNLVR 653 (1074)
Q Consensus 584 ~~~l~~l~--~L~~L~Ls~~~~~~~~p~~l~-------~l~~L~~L~L~~~~l~~lp~~~~-~l~~L~~L~L~~~~~l~~ 653 (1074)
|..+..++ +|+.|++++|......|..+. .+++|+.|++++|.+..+|..+. .+++|+.|++++|... .
T Consensus 393 p~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~ 471 (636)
T 4eco_A 393 PNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-E 471 (636)
T ss_dssp CSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-B
T ss_pred CHHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCC-C
T ss_conf 665533345766889774885788652442002201125898888977279668678788715898898989799788-7
Q ss_pred CCCHHCCC--------CCCCEEECCCCCCCCCCCCCCC--CCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 53000025--------9888997259768876752125--9998539973798889988764333211112222245898
Q 001458 654 LPSSIIAL--------KSLKTLNLSGCFKLENVPETLG--QIESLEELDISGTAVPHSTSWYSYIPINLMRKSVALKLPS 723 (1074)
Q Consensus 654 l~~~~~~l--------~~L~~L~L~~c~~l~~~~~~l~--~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 723 (1074)
+|...... ++|+.|++++|... .+|..+. .+++|+.|++++|.+... ...
T Consensus 472 i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~i-------------------p~~ 531 (636)
T 4eco_A 472 IPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSKF-------------------PTQ 531 (636)
T ss_dssp CCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSSC-------------------CCG
T ss_pred CCHHHHCCCCCCCCCCCCCCEEECCCCCCC-CCCHHHHHCCCCCCCEEECCCCCCCCC-------------------CHH
T ss_conf 397884044001221477338989699388-168545344588769898989988776-------------------823
Q ss_pred CCCCCCCCEEECCC------CCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEECCCCC
Q ss_conf 78999745881589------98888887632478889994766898672138010024787886056884
Q 001458 724 LSGLCSLRKLNLTD------CNLMEGALPSDIGNLCSLKELYLSKNSFVSLPTSITHLSKLLNIELEDCK 787 (1074)
Q Consensus 724 l~~l~~L~~L~L~~------c~~~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~ 787 (1074)
+..+++|+.|++++ |.+. +.+|..+..+++|+.|+|++|.+..+|..+. ++|+.|++++|+
T Consensus 532 ~~~l~~L~~L~Ls~N~~ls~N~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~ 598 (636)
T 4eco_A 532 PLNSSTLKGFGIRNQRDAQGNRTL-REWPEGITLCPSLTQLQIGSNDIRKVNEKIT--PNISVLDIKDNP 598 (636)
T ss_dssp GGGCSSCCEEECCSCBCTTCCBCC-CCCCTTGGGCSSCCEEECCSSCCCBCCSCCC--TTCCEEECCSCT
T ss_pred HHCCCCCCEEECCCCCCCCCCCCC-CCCHHHHHCCCCCCEEECCCCCCCCCCHHHH--CCCCEEECCCCC
T ss_conf 530888787889888665667312-1273778569987889898994770597683--867899876998
No 10
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=1.00 E-value=1 Score=295.69 Aligned_cols=317 Identities=18% Similarity=0.228 Sum_probs=232.1
Q ss_pred HHHHHHHHHHHCCCCCCEEEEEEECCCCCCHHHHHHHHHHHH---CCCCC-CEEEEEECHHHHCCCCHHHHHHH---HHH
Q ss_conf 168999998451899984999999469870899999999884---16455-12897501343325995999999---999
Q 001458 2 DSRCEKLRFLMDSGSSDVRMIGICGMGGLGKTTIARVVYDLI---SHEFE-ASGFLDNVREISSKGGLVSLQRQ---LLS 74 (1074)
Q Consensus 2 ~~~~~~l~~ll~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~---~~~F~-~~~~~~~~~~~s~~~~~~~l~~~---ll~ 74 (1074)
+..+++|..++.....+.++|+|+||||+||||||++++++. ..+|+ .++|+. +... ....+... +..
T Consensus 130 ~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~-~~~~----~~~~~~~~l~~l~~ 204 (591)
T 1z6t_A 130 KKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVS-VGKQ----DKSGLLMKLQNLCT 204 (591)
T ss_dssp HHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEE-EESC----CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHCHHHHHHHCCCCEEEEE-CCCC----CHHHHHHHHHHHHH
T ss_conf 999999999986036888469997699898899999998355688852899659997-7877----66889999999999
Q ss_pred HHHCCC---CCCCCCCCCHHHHHHHHHCC--CEEEEEECCCCCHHHHHHHHCCCCCCCCCCEEEEEECCHHHHHHCCCCC
Q ss_conf 994035---89634510008999954189--8079998079996877787229888899987999939834453419983
Q 001458 75 QLLKLA---DNSIWNVFDGIDMLGSRLQR--KKVLLVIDDVVDVKQLQSLAGNREWFGSGSRIIITSRDEHLLKTHGVDE 149 (1074)
Q Consensus 75 ~l~~~~---~~~~~~~~~~~~~i~~~L~~--kr~LlVlDdv~~~~~l~~l~~~~~~~~~gs~iiiTTR~~~v~~~~~~~~ 149 (1074)
.+.... .....+.......+...+.+ +++||||||||+.++++. +++|++||||||++.++..+. ..
T Consensus 205 ~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~-------l~~~~~ilvTsR~~~~~~~~~-~~ 276 (591)
T 1z6t_A 205 RLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKA-------FDSQCQILLTTRDKSVTDSVM-GP 276 (591)
T ss_dssp HHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHT-------TCSSCEEEEEESCGGGGTTCC-SC
T ss_pred HHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHH-------HCCCCEEEEECCCCHHHHHCC-CC
T ss_conf 8503556556799889999999999970679986999858998799987-------637986999898817777348-98
Q ss_pred EECC---CCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHCCC---
Q ss_conf 2228---9999678999999952058999756999999999995899058999973208999889999999875099---
Q 001458 150 VYKP---HGLNYDEALQLFNMKAFKTYQPLQECVQLSARIIRYAGGLPLALEVLGSFLSGRSVDEWRSTLERLEIEP--- 223 (1074)
Q Consensus 150 ~~~l---~~l~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~l~~~L~~~~~~~w~~~l~~l~~~~--- 223 (1074)
.|++ ++|+.+||++||...++.. .....+.+.+|+++|+|+|||++++|+.++.+. .+|+..+..+....
T Consensus 277 ~~~v~~l~~L~~~ea~~L~~~~~~~~---~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~-~~w~~~l~~l~~~~~~~ 352 (591)
T 1z6t_A 277 KYVVPVESSLGKEKGLEILSLFVNMK---KADLPEQAHSIIKECKGSPLVVSLIGALLRDFP-NRWEYYLKQLQNKQFKR 352 (591)
T ss_dssp EEEEECCSSCCHHHHHHHHHHHHTSC---GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST-TCHHHHHHHHHSCCCCC
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCC---CCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHH
T ss_conf 26861588999899999999871898---310459999999995898379999999984484-35999999998868987
Q ss_pred --------CCHHHHHHHHCCCCCCHHHHHHHEEEECCCCCC--CHHHHHHHHHHCCCCCCCCHHHHHCCCCEEEEC----
Q ss_conf --------952677886212467576562420350145888--988999985407998631021420136508728----
Q 001458 224 --------PSEILDILQISFDGLQELEKKIFLDIACFFKGN--DRDYVTNFLEGCGFHPVIGIRVLIEKCLITVHN---- 289 (1074)
Q Consensus 224 --------~~~i~~~l~~sy~~L~~~~k~~fl~~a~f~~~~--~~~~~~~~~~~~g~~~~~~i~~L~~~~Li~~~~---- 289 (1074)
...+..++..||+.|+++.|.||+++|+||.++ ..+.+..+|...+......+..|++++|++...
T Consensus 353 ~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~~~~~~~~l~~L~~~~Ll~~~~~~~~ 432 (591)
T 1z6t_A 353 IRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDMETEEVEDILQEFVNKSLLFCDRNGKS 432 (591)
T ss_dssp SSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSSEEEEETTE
T ss_pred HHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCCC
T ss_conf 65114654378999999999868999999999745567998508999999966588999999999985958688548985
Q ss_pred CEEEHHHHHHHHHHHHHHCCC-------------------CCCCCCCCCCCCHHHHHHHHCCCCC
Q ss_conf 957617999999999962159-------------------2134740125680468998213978
Q 001458 290 NTLWMHDLLQELGQQIVQRQS-------------------PEELGKRSRLWKEEEVCHVLTESTG 335 (1074)
Q Consensus 290 ~~~~mHdli~~~~~~i~~~~~-------------------~~~~~~~~rl~~~~~~~~~l~~~~~ 335 (1074)
.+|.||+++|+++++....+. ...++.+.++|..+.+.|++..+..
T Consensus 433 ~~~~~H~lv~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~a~~~ 497 (591)
T 1z6t_A 433 FRYYLHDLQVDFLTEKNCSQLQDLHKKIITQFQRYHQPHTLSPDQEDCMYWYNFLAYHMASAKMH 497 (591)
T ss_dssp EEEECCHHHHHHHHHHTGGGHHHHHHHHHHHHTTTCCGGGCCTTSTTHHHHHHHHHHHHHHTTCH
T ss_pred CEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEHHHHHHHHHHCCCH
T ss_conf 67997689999998653568999999999999765377899887898775150389999966877
Done!