Query 001460
Match_columns 1074
No_of_seqs 378 out of 1615
Neff 4.0
Searched_HMMs 46136
Date Fri Mar 29 01:22:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001460.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001460hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13508 Acetyltransf_7: Acety 98.9 1.1E-08 2.5E-13 89.8 10.8 77 913-994 3-79 (79)
2 PF00583 Acetyltransf_1: Acety 98.9 1.1E-08 2.4E-13 88.7 9.5 74 919-993 2-83 (83)
3 KOG1512 PHD Zn-finger protein 98.9 5.7E-10 1.2E-14 120.8 0.9 90 718-822 258-362 (381)
4 PF13673 Acetyltransf_10: Acet 98.8 2E-08 4.4E-13 92.2 10.4 74 913-992 44-117 (117)
5 COG1246 ArgA N-acetylglutamate 98.8 5.2E-09 1.1E-13 106.0 6.9 97 916-1014 43-143 (153)
6 KOG0956 PHD finger protein AF1 98.8 1.8E-09 3.8E-14 126.9 4.1 111 720-831 7-188 (900)
7 KOG1244 Predicted transcriptio 98.7 2.4E-09 5.1E-14 115.6 0.9 93 717-823 223-331 (336)
8 PRK07757 acetyltransferase; Pr 98.7 5.1E-08 1.1E-12 94.5 10.0 97 916-1015 44-143 (152)
9 PRK10314 putative acyltransfer 98.7 6E-08 1.3E-12 96.9 9.6 80 917-997 52-134 (153)
10 PTZ00330 acetyltransferase; Pr 98.6 1.1E-07 2.3E-12 91.0 8.1 83 914-997 53-141 (147)
11 PRK10146 aminoalkylphosphonic 98.5 2.5E-07 5.5E-12 88.1 8.6 81 915-996 49-137 (144)
12 PRK03624 putative acetyltransf 98.5 3.5E-07 7.5E-12 85.3 8.7 83 913-997 45-130 (140)
13 PLN02706 glucosamine 6-phospha 98.5 6.7E-07 1.4E-11 86.6 10.1 82 914-996 54-143 (150)
14 PF13527 Acetyltransf_9: Acety 98.5 1.3E-06 2.9E-11 81.9 10.8 112 869-995 9-127 (127)
15 PRK07922 N-acetylglutamate syn 98.4 7.8E-07 1.7E-11 90.1 9.6 80 915-997 47-127 (169)
16 TIGR01575 rimI ribosomal-prote 98.4 1.4E-06 2.9E-11 80.7 10.2 80 916-997 34-116 (131)
17 cd02169 Citrate_lyase_ligase C 98.4 6.5E-07 1.4E-11 99.4 9.2 76 915-996 8-83 (297)
18 PRK09491 rimI ribosomal-protei 98.4 2E-06 4.4E-11 83.1 10.2 85 911-997 38-125 (146)
19 KOG4443 Putative transcription 98.4 5.5E-08 1.2E-12 114.8 -1.0 115 650-800 36-180 (694)
20 COG5141 PHD zinc finger-contai 98.3 2.3E-07 5E-12 106.5 2.9 58 715-772 190-260 (669)
21 KOG4299 PHD Zn-finger protein 98.3 1.6E-07 3.5E-12 110.7 1.1 47 718-764 253-306 (613)
22 PLN02825 amino-acid N-acetyltr 98.3 2.2E-06 4.9E-11 101.4 10.3 82 915-998 409-491 (515)
23 KOG1244 Predicted transcriptio 98.3 1.4E-07 2.9E-12 102.3 0.2 77 648-761 245-329 (336)
24 TIGR03827 GNAT_ablB putative b 98.3 3E-06 6.5E-11 91.5 10.1 85 912-997 157-245 (266)
25 PRK10975 TDP-fucosamine acetyl 98.3 3.9E-06 8.4E-11 85.8 10.4 85 911-996 100-187 (194)
26 TIGR01890 N-Ac-Glu-synth amino 98.3 2.9E-06 6.3E-11 97.8 10.2 81 916-998 325-406 (429)
27 TIGR00124 cit_ly_ligase [citra 98.3 3.3E-06 7.2E-11 95.2 10.0 84 909-998 27-110 (332)
28 PRK05279 N-acetylglutamate syn 98.2 4.8E-06 1E-10 96.2 10.5 80 916-997 337-417 (441)
29 TIGR02382 wecD_rffC TDP-D-fuco 98.2 6.6E-06 1.4E-10 84.2 10.1 80 916-996 102-184 (191)
30 KOG1473 Nucleosome remodeling 98.2 1.9E-07 4.1E-12 114.7 -2.1 146 590-761 240-389 (1414)
31 KOG4443 Putative transcription 98.2 5.7E-07 1.2E-11 106.5 1.8 89 717-818 17-114 (694)
32 PRK12308 bifunctional arginino 98.2 6.1E-06 1.3E-10 99.4 10.3 81 915-998 505-585 (614)
33 PHA00673 acetyltransferase dom 98.1 1.2E-05 2.6E-10 82.1 9.8 84 913-997 55-146 (154)
34 PRK10140 putative acetyltransf 98.1 2E-05 4.4E-10 76.3 10.1 86 912-999 50-143 (162)
35 PRK09831 putative acyltransfer 98.0 1.3E-05 2.8E-10 78.3 8.0 73 915-998 55-127 (147)
36 PRK13688 hypothetical protein; 98.0 2.5E-05 5.5E-10 79.3 9.7 76 917-998 49-134 (156)
37 TIGR03448 mycothiol_MshD mycot 98.0 2.4E-05 5.2E-10 84.1 9.8 86 911-997 198-288 (292)
38 KOG0955 PHD finger protein BR1 98.0 4.6E-06 9.9E-11 104.5 4.0 59 715-773 216-287 (1051)
39 TIGR02406 ectoine_EctA L-2,4-d 97.9 4.5E-05 9.7E-10 76.3 9.9 83 913-996 39-127 (157)
40 KOG0954 PHD finger protein [Ge 97.9 2.9E-06 6.4E-11 101.4 1.6 87 715-801 268-365 (893)
41 cd04301 NAT_SF N-Acyltransfera 97.9 5E-05 1.1E-09 60.0 7.8 61 916-976 2-64 (65)
42 COG0456 RimI Acetyltransferase 97.9 5.3E-05 1.2E-09 74.6 9.0 76 923-999 72-156 (177)
43 TIGR03448 mycothiol_MshD mycot 97.9 6.3E-05 1.4E-09 81.0 10.1 82 913-997 46-128 (292)
44 KOG1512 PHD Zn-finger protein 97.9 4.9E-06 1.1E-10 91.0 1.5 75 647-758 277-357 (381)
45 PF00628 PHD: PHD-finger; Int 97.9 3.7E-06 8.1E-11 69.6 0.4 42 720-761 1-49 (51)
46 PF13420 Acetyltransf_4: Acety 97.8 0.00013 2.7E-09 70.8 10.9 76 920-997 58-139 (155)
47 smart00249 PHD PHD zinc finger 97.8 1.1E-05 2.4E-10 63.7 2.7 41 720-760 1-47 (47)
48 TIGR03103 trio_acet_GNAT GNAT- 97.8 6.7E-05 1.5E-09 89.6 10.4 86 911-997 121-217 (547)
49 KOG3139 N-acetyltransferase [G 97.8 5.9E-05 1.3E-09 77.5 7.8 81 924-1005 68-154 (165)
50 KOG0825 PHD Zn-finger protein 97.8 6.8E-06 1.5E-10 98.6 1.0 44 718-761 215-264 (1134)
51 PRK01346 hypothetical protein; 97.8 9.4E-05 2E-09 84.1 9.7 81 915-998 49-137 (411)
52 KOG1973 Chromatin remodeling p 97.7 1.3E-05 2.9E-10 88.2 1.9 42 719-761 222-266 (274)
53 KOG3396 Glucosamine-phosphate 97.7 0.00011 2.4E-09 73.9 7.8 84 913-997 53-144 (150)
54 PRK10514 putative acetyltransf 97.7 0.00016 3.4E-09 69.5 8.4 75 917-999 54-128 (145)
55 KOG4299 PHD Zn-finger protein 97.6 3.4E-05 7.3E-10 91.8 4.1 44 718-761 47-93 (613)
56 TIGR01686 FkbH FkbH-like domai 97.6 0.00019 4.1E-09 79.9 9.2 82 912-995 230-319 (320)
57 PRK10562 putative acetyltransf 97.6 0.00023 5E-09 69.1 8.5 76 915-997 50-125 (145)
58 KOG0383 Predicted helicase [Ge 97.6 1.7E-05 3.6E-10 96.4 0.5 50 714-763 43-94 (696)
59 PRK15130 spermidine N1-acetylt 97.6 0.00042 9.2E-09 69.9 10.3 82 914-997 58-145 (186)
60 PF08445 FR47: FR47-like prote 97.5 0.0004 8.7E-09 63.9 8.5 74 922-997 7-82 (86)
61 PHA01807 hypothetical protein 97.5 0.00025 5.5E-09 72.1 7.9 76 913-988 53-135 (153)
62 KOG4323 Polycomb-like PHD Zn-f 97.5 7.4E-05 1.6E-09 87.2 3.7 99 719-825 84-226 (464)
63 TIGR03585 PseH pseudaminic aci 97.4 0.0011 2.3E-08 64.3 10.4 79 916-997 54-138 (156)
64 PF15446 zf-PHD-like: PHD/FYVE 97.4 9.2E-05 2E-09 76.5 2.9 82 720-801 1-142 (175)
65 COG3393 Predicted acetyltransf 97.3 0.00062 1.3E-08 74.8 8.6 81 915-996 179-261 (268)
66 PF13523 Acetyltransf_8: Acety 97.3 0.0017 3.7E-08 63.3 10.6 87 910-997 45-141 (152)
67 TIGR01211 ELP3 histone acetylt 97.3 0.00055 1.2E-08 81.7 8.5 78 919-997 420-516 (522)
68 COG5034 TNG2 Chromatin remodel 97.3 0.00011 2.4E-09 79.8 2.2 45 716-761 219-268 (271)
69 PF13302 Acetyltransf_3: Acety 97.3 0.0018 4E-08 61.2 10.1 79 913-993 56-142 (142)
70 COG2153 ElaA Predicted acyltra 97.3 0.0007 1.5E-08 69.0 7.3 82 916-998 53-137 (155)
71 PRK10809 ribosomal-protein-S5- 97.2 0.0019 4.2E-08 65.7 9.5 82 913-996 77-165 (194)
72 PRK10151 ribosomal-protein-L7/ 97.0 0.0049 1.1E-07 61.9 10.2 80 916-997 70-155 (179)
73 PF13718 GNAT_acetyltr_2: GNAT 96.9 0.005 1.1E-07 65.5 10.0 98 911-1009 25-190 (196)
74 KOG0383 Predicted helicase [Ge 96.8 0.00098 2.1E-08 81.6 4.3 69 735-820 1-91 (696)
75 COG3153 Predicted acetyltransf 96.6 0.012 2.5E-07 61.7 9.5 140 864-1023 8-152 (171)
76 cd04718 BAH_plant_2 BAH, or Br 96.4 0.002 4.4E-08 65.7 2.8 31 739-769 1-33 (148)
77 PF08444 Gly_acyl_tr_C: Aralky 96.2 0.0084 1.8E-07 56.8 5.8 74 917-996 3-79 (89)
78 COG1247 Sortase and related ac 96.2 0.032 6.8E-07 58.4 10.4 110 910-1023 49-166 (169)
79 smart00249 PHD PHD zinc finger 96.0 0.0056 1.2E-07 48.3 2.9 34 781-817 12-45 (47)
80 PF12746 GNAT_acetyltran: GNAT 95.8 0.046 1E-06 60.7 10.1 76 919-996 171-246 (265)
81 PF00628 PHD: PHD-finger; Int 95.8 0.0021 4.6E-08 53.2 -0.4 38 781-821 12-49 (51)
82 KOG0957 PHD finger protein [Ge 95.8 0.0039 8.5E-08 73.0 1.4 50 719-768 120-191 (707)
83 PF12568 DUF3749: Acetyltransf 95.6 0.077 1.7E-06 53.4 9.7 80 912-996 39-124 (128)
84 KOG1245 Chromatin remodeling c 95.5 0.0031 6.8E-08 82.5 -0.6 45 717-761 1107-1156(1404)
85 COG0454 WecD Histone acetyltra 95.5 0.018 3.9E-07 47.6 4.1 44 943-992 87-130 (156)
86 KOG0825 PHD Zn-finger protein 95.4 0.0055 1.2E-07 74.8 0.9 52 758-823 214-266 (1134)
87 PF13831 PHD_2: PHD-finger; PD 95.3 0.0017 3.7E-08 51.8 -2.6 34 728-761 2-36 (36)
88 KOG1973 Chromatin remodeling p 95.2 0.0064 1.4E-07 67.4 0.5 35 781-822 230-267 (274)
89 KOG4323 Polycomb-like PHD Zn-f 95.1 0.0066 1.4E-07 71.4 0.6 43 719-761 169-222 (464)
90 KOG0957 PHD finger protein [Ge 95.1 0.0084 1.8E-07 70.4 1.2 44 718-761 544-596 (707)
91 COG3053 CitC Citrate lyase syn 95.0 0.079 1.7E-06 59.7 8.3 80 914-999 38-117 (352)
92 COG1444 Predicted P-loop ATPas 94.9 0.034 7.5E-07 69.1 5.7 59 938-998 532-592 (758)
93 KOG3216 Diamine acetyltransfer 94.8 0.17 3.7E-06 52.5 9.4 121 867-997 17-146 (163)
94 COG1670 RimL Acetyltransferase 94.4 0.24 5.1E-06 48.4 9.2 86 911-997 64-158 (187)
95 KOG3397 Acetyltransferases [Ge 94.4 0.066 1.4E-06 56.5 5.4 82 920-1003 64-147 (225)
96 PF14542 Acetyltransf_CG: GCN5 94.0 0.26 5.7E-06 45.1 7.9 57 917-974 3-59 (78)
97 KOG2488 Acetyltransferase (GNA 93.9 0.15 3.2E-06 54.5 6.9 84 913-997 93-182 (202)
98 COG2388 Predicted acetyltransf 93.5 0.28 6E-06 47.5 7.5 73 911-987 15-87 (99)
99 KOG4144 Arylalkylamine N-acety 93.0 0.083 1.8E-06 54.9 3.3 59 938-997 102-161 (190)
100 PF13480 Acetyltransf_6: Acety 92.5 0.73 1.6E-05 43.5 8.8 64 912-976 70-133 (142)
101 KOG3138 Predicted N-acetyltran 91.7 0.25 5.4E-06 52.6 5.1 60 937-997 89-152 (187)
102 COG4552 Eis Predicted acetyltr 89.3 0.58 1.2E-05 54.1 5.6 85 908-997 36-127 (389)
103 KOG3234 Acetyltransferase, (GN 89.2 0.37 8E-06 50.4 3.6 56 938-994 70-128 (173)
104 COG5034 TNG2 Chromatin remodel 87.7 0.26 5.5E-06 54.6 1.5 36 781-823 232-270 (271)
105 KOG3235 Subunit of the major N 85.5 2.7 5.8E-05 44.4 7.3 83 917-999 45-137 (193)
106 PF01429 MBD: Methyl-CpG bindi 83.9 1 2.2E-05 41.4 3.1 40 404-443 11-53 (77)
107 PF07227 DUF1423: Protein of u 83.4 0.93 2E-05 53.8 3.3 66 754-825 123-194 (446)
108 PF06852 DUF1248: Protein of u 83.2 5.8 0.00013 42.3 8.8 84 913-997 47-137 (181)
109 KOG0955 PHD finger protein BR1 82.7 0.7 1.5E-05 59.7 2.2 36 780-822 233-268 (1051)
110 KOG1245 Chromatin remodeling c 81.8 0.69 1.5E-05 61.6 1.7 50 762-825 1111-1160(1404)
111 COG1243 ELP3 Histone acetyltra 81.5 1.3 2.8E-05 52.9 3.6 63 930-996 446-508 (515)
112 cd01396 MeCP2_MBD MeCP2, MBD1, 80.6 2.2 4.7E-05 39.6 4.0 57 404-465 7-65 (77)
113 COG3981 Predicted acetyltransf 80.5 2.9 6.3E-05 44.4 5.3 68 913-982 70-142 (174)
114 KOG1081 Transcription factor N 77.8 1.8 3.8E-05 51.9 3.2 45 715-760 86-130 (463)
115 KOG0954 PHD finger protein [Ge 77.3 1.3 2.9E-05 54.9 2.1 47 762-822 274-320 (893)
116 TIGR03694 exosort_acyl putativ 76.9 15 0.00033 40.4 9.8 93 902-995 45-196 (241)
117 cd04264 DUF619-NAGS DUF619 dom 76.9 5.4 0.00012 38.7 5.6 52 913-966 10-63 (99)
118 PF01342 SAND: SAND domain; I 74.0 0.78 1.7E-05 43.0 -0.8 37 650-689 37-74 (82)
119 COG5141 PHD zinc finger-contai 73.5 1.4 3.1E-05 52.5 1.0 32 779-816 206-237 (669)
120 KOG0956 PHD finger protein AF1 73.1 1.3 2.9E-05 54.6 0.6 37 779-822 18-56 (900)
121 PF01233 NMT: Myristoyl-CoA:pr 72.5 19 0.00042 38.1 8.7 66 908-973 72-146 (162)
122 cd00122 MBD MeCP2, MBD1, MBD2, 71.8 5.9 0.00013 35.0 4.2 41 404-444 6-48 (62)
123 cd04718 BAH_plant_2 BAH, or Br 69.9 2 4.3E-05 44.6 0.9 26 792-822 1-26 (148)
124 smart00258 SAND SAND domain. 69.5 2.2 4.8E-05 39.5 1.1 40 649-689 22-65 (73)
125 KOG1473 Nucleosome remodeling 69.5 0.76 1.6E-05 59.1 -2.5 46 717-762 427-478 (1414)
126 KOG4628 Predicted E3 ubiquitin 68.1 3.5 7.5E-05 47.9 2.5 44 719-763 230-276 (348)
127 PF02474 NodA: Nodulation prot 66.6 8.1 0.00018 41.3 4.6 51 937-988 85-135 (196)
128 PF14446 Prok-RING_1: Prokaryo 65.1 3.1 6.7E-05 36.6 1.0 29 719-747 6-38 (54)
129 PF13832 zf-HC5HC2H_2: PHD-zin 63.8 3.9 8.4E-05 39.1 1.5 65 720-800 2-87 (110)
130 KOG0804 Cytoplasmic Zn-finger 61.9 2.8 6E-05 49.9 0.2 40 718-761 175-218 (493)
131 TIGR03019 pepcterm_femAB FemAB 60.8 28 0.0006 39.3 7.8 81 915-996 197-280 (330)
132 COG5628 Predicted acetyltransf 58.7 45 0.00097 34.2 7.9 84 915-1003 39-130 (143)
133 cd04265 DUF619-NAGS-U DUF619 d 57.7 15 0.00033 35.7 4.4 42 926-967 22-64 (99)
134 PF01853 MOZ_SAS: MOZ/SAS fami 57.0 26 0.00056 37.9 6.4 84 868-968 26-111 (188)
135 KOG1701 Focal adhesion adaptor 57.0 2.7 5.9E-05 49.7 -0.9 42 753-800 381-430 (468)
136 KOG1246 DNA-binding protein ju 52.5 17 0.00036 47.1 4.9 51 718-768 155-209 (904)
137 PRK13834 putative autoinducer 52.0 97 0.0021 33.5 9.8 93 902-995 42-163 (207)
138 PF14446 Prok-RING_1: Prokaryo 50.3 8.7 0.00019 33.9 1.3 34 759-800 5-38 (54)
139 PLN03238 probable histone acet 50.2 22 0.00049 40.6 4.8 30 939-968 157-186 (290)
140 PF13831 PHD_2: PHD-finger; PD 50.1 5.5 0.00012 32.1 0.1 31 782-817 3-33 (36)
141 PF11793 FANCL_C: FANCL C-term 48.6 7.8 0.00017 35.2 0.8 28 719-746 3-38 (70)
142 PF12861 zf-Apc11: Anaphase-pr 45.5 6.9 0.00015 37.3 -0.0 40 721-761 35-78 (85)
143 KOG2747 Histone acetyltransfer 44.1 19 0.00042 42.7 3.2 22 940-961 263-284 (396)
144 COG1107 Archaea-specific RecJ- 43.8 14 0.0003 45.7 2.0 36 717-761 67-102 (715)
145 PF07897 DUF1675: Protein of u 43.2 10 0.00023 43.1 0.9 40 640-679 237-283 (284)
146 PRK00756 acyltransferase NodA; 43.0 34 0.00074 36.7 4.5 37 936-973 84-120 (196)
147 PF10497 zf-4CXXC_R1: Zinc-fin 41.9 15 0.00033 36.0 1.7 35 735-769 35-80 (105)
148 KOG1829 Uncharacterized conser 41.8 16 0.00034 45.3 2.2 36 780-827 528-563 (580)
149 KOG1734 Predicted RING-contain 41.7 9.4 0.0002 43.2 0.3 50 698-747 203-263 (328)
150 PF13832 zf-HC5HC2H_2: PHD-zin 41.1 12 0.00026 35.8 0.9 30 718-747 55-87 (110)
151 PF13901 DUF4206: Domain of un 39.5 21 0.00046 38.4 2.5 37 718-761 152-196 (202)
152 KOG4135 Predicted phosphogluco 38.8 59 0.0013 34.5 5.4 58 938-996 108-169 (185)
153 PF12148 DUF3590: Protein of u 38.6 15 0.00032 35.2 1.0 31 608-643 55-85 (85)
154 KOG3612 PHD Zn-finger protein 37.2 23 0.0005 43.4 2.5 45 717-761 59-106 (588)
155 PLN03239 histone acetyltransfe 37.2 41 0.00089 39.5 4.4 28 939-966 215-242 (351)
156 PF05502 Dynactin_p62: Dynacti 36.8 24 0.00051 42.9 2.6 30 729-761 4-33 (483)
157 KOG3576 Ovo and related transc 36.3 12 0.00025 41.1 -0.1 63 728-799 115-189 (267)
158 PTZ00064 histone acetyltransfe 35.9 43 0.00092 41.1 4.4 27 939-965 386-412 (552)
159 PLN00104 MYST -like histone ac 35.4 35 0.00075 41.3 3.6 24 939-962 308-331 (450)
160 PF05301 Mec-17: Touch recepto 35.2 50 0.0011 33.6 4.1 62 945-1013 54-116 (120)
161 PF13639 zf-RING_2: Ring finge 33.3 3.6 7.7E-05 33.4 -3.5 40 719-761 1-44 (44)
162 PRK04023 DNA polymerase II lar 33.2 29 0.00062 45.5 2.6 34 717-761 625-658 (1121)
163 COG3818 Predicted acetyltransf 32.5 96 0.0021 32.4 5.6 51 948-998 95-149 (167)
164 PF13771 zf-HC5HC2H: PHD-like 32.2 20 0.00044 32.9 0.8 30 718-747 36-68 (90)
165 PF15446 zf-PHD-like: PHD/FYVE 31.9 30 0.00065 37.0 2.1 34 762-801 2-35 (175)
166 smart00391 MBD Methyl-CpG bind 30.9 67 0.0014 30.0 3.9 36 404-439 8-46 (77)
167 PF13880 Acetyltransf_13: ESCO 30.8 37 0.00079 31.5 2.2 26 940-965 8-33 (70)
168 KOG2535 RNA polymerase II elon 30.6 51 0.0011 38.8 3.7 65 927-995 479-545 (554)
169 smart00547 ZnF_RBZ Zinc finger 29.1 36 0.00077 24.9 1.5 9 753-761 1-9 (26)
170 PF04377 ATE_C: Arginine-tRNA- 28.6 2.3E+02 0.0049 29.0 7.6 60 915-975 41-100 (128)
171 PF07943 PBP5_C: Penicillin-bi 28.0 71 0.0015 29.1 3.6 28 920-947 61-88 (91)
172 PLN02400 cellulose synthase 27.7 59 0.0013 43.1 4.0 45 716-761 34-85 (1085)
173 PRK14852 hypothetical protein; 27.0 1.8E+02 0.0039 38.7 8.0 83 915-997 77-181 (989)
174 KOG1632 Uncharacterized PHD Zn 26.6 35 0.00077 39.8 1.7 60 782-845 74-135 (345)
175 KOG2779 N-myristoyl transferas 26.1 4.8E+02 0.01 31.4 10.4 93 905-997 126-241 (421)
176 PF00765 Autoind_synth: Autoin 25.9 3.6E+02 0.0079 28.8 8.9 93 902-996 34-154 (182)
177 COG5027 SAS2 Histone acetyltra 25.6 32 0.00069 40.4 1.1 25 936-960 261-285 (395)
178 PF00641 zf-RanBP: Zn-finger i 25.4 27 0.00059 26.6 0.3 10 752-761 2-11 (30)
179 COG0143 MetG Methionyl-tRNA sy 25.2 35 0.00076 42.3 1.4 36 753-799 125-171 (558)
180 PRK14559 putative protein seri 24.8 52 0.0011 41.5 2.8 41 720-760 3-47 (645)
181 KOG1080 Histone H3 (Lys4) meth 24.8 78 0.0017 41.9 4.3 55 719-773 574-641 (1005)
182 KOG2752 Uncharacterized conser 24.4 46 0.00099 38.7 2.0 22 780-801 145-167 (345)
183 cd00162 RING RING-finger (Real 23.0 21 0.00045 27.4 -0.7 40 721-761 2-42 (45)
184 PLN03086 PRLI-interacting fact 22.9 27 0.00059 43.3 -0.1 100 650-793 408-551 (567)
185 KOG0269 WD40 repeat-containing 22.3 36 0.00077 43.3 0.7 42 749-800 763-810 (839)
186 PF05687 DUF822: Plant protein 22.2 69 0.0015 33.6 2.6 24 395-434 47-70 (150)
187 PHA02929 N1R/p28-like protein; 22.1 37 0.0008 37.9 0.7 43 717-761 173-223 (238)
188 PRK10001 D-alanyl-D-alanine ca 22.1 1.6E+02 0.0036 35.1 6.0 46 920-966 346-391 (400)
189 PLN02638 cellulose synthase A 21.9 75 0.0016 42.2 3.4 56 716-772 15-82 (1079)
190 PF13901 DUF4206: Domain of un 21.4 45 0.00097 36.0 1.2 20 781-800 170-189 (202)
191 KOG1701 Focal adhesion adaptor 20.8 16 0.00035 43.6 -2.4 68 720-799 276-362 (468)
192 cd00716 creatine_kinase_like P 20.3 1.1E+02 0.0023 36.3 4.0 88 867-964 60-148 (357)
No 1
>PF13508 Acetyltransf_7: Acetyltransferase (GNAT) domain; PDB: 3EY5_A 3FRM_B 3D8P_B 3GY9_A 3GYA_A 3S6F_A 2Q7B_A 1CM0_B 1XEB_B 1Y7R_A ....
Probab=98.90 E-value=1.1e-08 Score=89.81 Aligned_cols=77 Identities=17% Similarity=0.242 Sum_probs=67.1
Q ss_pred ceEEEEeeCCeEEEEEEEEEecCeeEEeeeeeeeccccccChhHHHHHHHHHHHhhcCceEEEEcchhhhHHHhhhccCc
Q 001460 913 FYTAILERGDEIISAASIRFHGTQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAIAELMHTWTRVFGF 992 (1074)
Q Consensus 913 FYT~VLe~~devVsaAsiRV~G~~~AElPlvAT~~~yRrQGmgR~Lv~aIE~~L~~LgVe~LvlpA~~ea~~~Wt~kFGF 992 (1074)
-+.+|++.+++|||++.+.-.+ +.+.|..|||.|+||+||+|+.||+.+++.+.. ..+++-+.+.++++|+ ++||
T Consensus 3 ~~~~~~~~~~~ivG~~~~~~~~-~~~~i~~~~v~~~~rg~Gig~~ll~~~~~~~~~---~~i~l~~~~~~~~fY~-~~GF 77 (79)
T PF13508_consen 3 ERFFVAEDDGEIVGFIRLWPNE-DFAYIGYLAVDPEYRGKGIGSKLLNYLLEKAKS---KKIFLFTNPAAIKFYE-KLGF 77 (79)
T ss_dssp EEEEEEEETTEEEEEEEEEETT-TEEEEEEEEE-GGGTTSSHHHHHHHHHHHHHTC---SEEEEEEEHHHHHHHH-HTTE
T ss_pred cEEEEEEECCEEEEEEEEEEcC-CEEEEEEEEECHHHcCCCHHHHHHHHHHHHcCC---CcEEEEEcHHHHHHHH-HCcC
Confidence 4678899999999999997666 589999999999999999999999999888854 5567888899999999 6999
Q ss_pred EE
Q 001460 993 TS 994 (1074)
Q Consensus 993 ~~ 994 (1074)
++
T Consensus 78 ~~ 79 (79)
T PF13508_consen 78 EE 79 (79)
T ss_dssp EE
T ss_pred CC
Confidence 85
No 2
>PF00583 Acetyltransf_1: Acetyltransferase (GNAT) family; InterPro: IPR000182 The N-acetyltransferases (NAT) (EC 2.3.1.-) are enzymes that use acetyl coenzyme A (CoA) to transfer an acetyl group to a substrate, a reaction implicated in various functions from bacterial antibiotic resistance to mammalian circadian rhythm and chromatin remodeling. The Gcn5-related N-acetyltransferases (GNAT) catalyze the transfer of the acetyl from the CoA donor to a primary amine of the acceptor. The GNAT proteins share a domain composed of four conserved sequence motifs A-D [, ]. This GNAT domain is named after yeast GCN5 (from General Control Nonrepressed) and related histone acetyltransferases (HATs) like Hat1 and PCAF. HATs acetylate lysine residues of amino terminal histone tails, resulting in transcription activation. Another category of GNAT, the aminoglycoside N-acetyltransferases, confer antibiotic resistance by catalyzing the acetylation of amino groups in aminoglycoside antibiotics []. GNAT proteins can also have anabolic and catabolic functions in both prokaryotes and eukaryotes [, , , , ]. The acetyltransferase/GNAT domain forms a structurally conserved fold of 6 to 7 beta strands (B) and 4 helices (H) in the topology B1-H1-H2-B2-B3-B4-H3-B5-H4-B6, followed by a C-terminal strand which may be from the same monomer or contributed by another [, ]. Motifs D (B2-B3), A (B4-H3) and B (B5-H4) are collectively called the HAT core [, , ], while the N-terminal motif C (B1-H1) is less conserved. Some proteins known to contain a GNAT domain: Yeast GCN5 and Hat1, which are histone acetyltransferases (EC 2.3.1.48). Human PCAF, a histone acetyltransferase. Mammalian serotonin N-acetyltransferase (SNAT) or arylalkylamine NAT (AANAT), which acetylates serotonin into a circadian neurohormone that may participate in light-dark rhythms, and human mood and behavior. Mammalian glucosamine 6-phosphate N-acetyltransferase (GNA1) (EC 2.3.1.4). Escherichia coli rimI and rimJ, which acetylate the N-terminal alanine of ribosomal proteins S18 and S5, respectively (EC 2.3.1.128). Mycobacterium tuberculosis aminoglycoside 2'-N-acetyltransferase (aac), which acetylates the 2' hydroxyl or amino group of a broad spectrum of aminoglycoside antibiotics. Bacillus subtilis bltD and paiA, which acetylate spermine and spermidine. This entry represents the entire GNAT domain.; GO: 0008080 N-acetyltransferase activity, 0008152 metabolic process; PDB: 3T9Y_A 2R7H_B 2OZH_A 1Y9W_B 1VKC_B 2OH1_C 3R9E_B 3R9G_B 3R9F_A 3R96_A ....
Probab=98.87 E-value=1.1e-08 Score=88.74 Aligned_cols=74 Identities=20% Similarity=0.274 Sum_probs=67.8
Q ss_pred eeCCeEEEEEEEEEecC-----eeEEeeeeeeeccccccChhHHHHHHHHHHHhhcCceEEEEcchhh---hHHHhhhcc
Q 001460 919 ERGDEIISAASIRFHGT-----QLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAIAE---LMHTWTRVF 990 (1074)
Q Consensus 919 e~~devVsaAsiRV~G~-----~~AElPlvAT~~~yRrQGmgR~Lv~aIE~~L~~LgVe~LvlpA~~e---a~~~Wt~kF 990 (1074)
+.+|+||+++.+++... ..+.|-.++|.++||+||+|+.||+.+++.++..|+..|++...++ +..+|. ++
T Consensus 2 ~~~~~ivg~~~~~~~~~~~~~~~~~~i~~~~v~~~~r~~Gig~~L~~~~~~~~~~~g~~~i~~~~~~~n~~~~~~~~-k~ 80 (83)
T PF00583_consen 2 EEDGQIVGFASLRPPPEPFDHGNHAYIHRLAVDPEYRGQGIGSKLLQAAEEWARKRGIKRIYLDVSPDNPAARRFYE-KL 80 (83)
T ss_dssp EETTEEEEEEEEEEEETTTTTTTEEEEEEEEECGGGTTSSHHHHHHHHHHHHHHHTTESEEEEEEETTGHHHHHHHH-HT
T ss_pred cCCCEEEEEEEEEECCCccccCCEEEEEEEEEcHHHhhCCCchhhhhhhhhhHHhcCccEEEEEEeCCCHHHHHHHH-Hc
Confidence 57999999999999887 4999999999999999999999999999999999999999877765 559999 69
Q ss_pred CcE
Q 001460 991 GFT 993 (1074)
Q Consensus 991 GF~ 993 (1074)
||+
T Consensus 81 Gf~ 83 (83)
T PF00583_consen 81 GFE 83 (83)
T ss_dssp TEE
T ss_pred CCC
Confidence 996
No 3
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.85 E-value=5.7e-10 Score=120.78 Aligned_cols=90 Identities=22% Similarity=0.493 Sum_probs=72.0
Q ss_pred ccccccccCCC---------CcEecCCCCCcCCCCCCCCcC-----CCCCCCCCCCcc-ccccCCCCCCCCCCCCCCCcc
Q 001460 718 DDTCGICGDGG---------DLICCDGCPSTFHQSCLDIQM-----LPPGDWHCPNCT-CKFCGLAGEDDAEGDDTTTSA 782 (1074)
Q Consensus 718 dd~C~VCgdGG---------dLLcCD~CprafH~~CL~p~~-----vP~g~W~Cp~C~-C~~Cg~~~~d~~eed~~s~~~ 782 (1074)
...|.+|-++- .+|+|..|..++|++|+..+. +-...|.|..|. |.+|+.+....+
T Consensus 258 ~~~~~~~~~~~~~~~~~r~~S~I~C~~C~~~~HP~Ci~M~~elv~~~KTY~W~C~~C~lC~IC~~P~~E~E--------- 328 (381)
T KOG1512|consen 258 RNERKHFWDIQTNIIQSRRNSWIVCKPCATRPHPYCVAMIPELVGQYKTYFWKCSSCELCRICLGPVIESE--------- 328 (381)
T ss_pred hhhhhhhhcchhhhhhhhhccceeecccccCCCCcchhcCHHHHhHHhhcchhhcccHhhhccCCcccchh---------
Confidence 35788887643 399999999999999999642 445789999998 999998875433
Q ss_pred cccCCcchhhhhhhccccccccccCCCCCccceeCCcchh
Q 001460 783 LLPCAMCEKKYHKLCMQEMDALSDNLTGLVTSFCGRKCQE 822 (1074)
Q Consensus 783 Ll~CdQCer~YHv~CL~~~d~~p~~~~p~~~WFCs~~Cke 822 (1074)
+++||.|++.||..|..- ...|.+.|+|--.|..
T Consensus 329 ~~FCD~CDRG~HT~CVGL------~~lP~G~WICD~~C~~ 362 (381)
T KOG1512|consen 329 HLFCDVCDRGPHTLCVGL------QDLPRGEWICDMRCRE 362 (381)
T ss_pred eeccccccCCCCcccccc------ccccCccchhhhHHHH
Confidence 899999999999999873 2346799999665643
No 4
>PF13673 Acetyltransf_10: Acetyltransferase (GNAT) domain; PDB: 2FIW_A 1BOB_A 3FNC_B 3EXN_A.
Probab=98.84 E-value=2e-08 Score=92.21 Aligned_cols=74 Identities=23% Similarity=0.304 Sum_probs=65.5
Q ss_pred ceEEEEeeCCeEEEEEEEEEecCeeEEeeeeeeeccccccChhHHHHHHHHHHHhhcCceEEEEcchhhhHHHhhhccCc
Q 001460 913 FYTAILERGDEIISAASIRFHGTQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAIAELMHTWTRVFGF 992 (1074)
Q Consensus 913 FYT~VLe~~devVsaAsiRV~G~~~AElPlvAT~~~yRrQGmgR~Lv~aIE~~L~~LgVe~LvlpA~~ea~~~Wt~kFGF 992 (1074)
...+|++.+++||+.+.++ .-++|..+.|.|+|||+|+|++||+++++.++. |+..|++.+...+..+|. ++||
T Consensus 44 ~~~~v~~~~~~ivG~~~~~----~~~~i~~l~v~p~~r~~Gig~~Ll~~~~~~~~~-~~~~l~~~~~~~a~~~y~-~~GF 117 (117)
T PF13673_consen 44 HTIFVAEEGGEIVGFAWLE----PDGEISHLYVLPEYRGRGIGRALLDAAEKEAKD-GIRRLTVEANERARRFYR-KLGF 117 (117)
T ss_dssp CEEEEEEETTEEEEEEEEE----TCEEEEEEEE-GGGTTSSHHHHHHHHHHHHHTT-TCEEEEEEC-HHHHHHHH-HTT-
T ss_pred CEEEEEEECCEEEEEEEEc----CCCeEEEEEEChhhcCCcHHHHHHHHHHHHHHc-CCcEEEEEeCHHHHHHHH-hCCC
Confidence 5688899999999999986 345699999999999999999999999999988 999999999999999999 5998
No 5
>COG1246 ArgA N-acetylglutamate synthase and related acetyltransferases [Amino acid transport and metabolism]
Probab=98.83 E-value=5.2e-09 Score=105.99 Aligned_cols=97 Identities=21% Similarity=0.269 Sum_probs=81.0
Q ss_pred EEEeeCCeEEEEEEEE-EecCeeEEeeeeeeeccccccChhHHHHHHHHHHHhhcCceEEEEcchhhhHHHhhhccCcEE
Q 001460 916 AILERGDEIISAASIR-FHGTQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAIAELMHTWTRVFGFTS 994 (1074)
Q Consensus 916 ~VLe~~devVsaAsiR-V~G~~~AElPlvAT~~~yRrQGmgR~Lv~aIE~~L~~LgVe~LvlpA~~ea~~~Wt~kFGF~~ 994 (1074)
+|+|.+|.||+||.+. +.+.+++||.-||+.|+||++|+|..|+..|+..++.+|++++++-+. .+.+ |-.++||+.
T Consensus 43 ~i~E~~g~viGC~aL~~~~~~~~gE~~~laV~pd~r~~G~G~~Ll~~~~~~Ar~~gi~~lf~LTt-~~~~-~F~~~GF~~ 120 (153)
T COG1246 43 TIIERDGKVIGCAALHPVLEEDLGELRSLAVHPDYRGSGRGERLLERLLADARELGIKELFVLTT-RSPE-FFAERGFTR 120 (153)
T ss_pred eeeeeCCcEEEEEeecccCccCeeeEEEEEECHHhcCCCcHHHHHHHHHHHHHHcCCceeeeeec-ccHH-HHHHcCCeE
Confidence 3577899999999999 889999999999999999999999999999999999999999998876 3334 444799999
Q ss_pred ccHHH--HHhhhccc-eeeecCc
Q 001460 995 LEESL--KQEMRSLN-MLVFPGI 1014 (1074)
Q Consensus 995 m~~~~--k~~~~~~~-ll~FpGt 1014 (1074)
++.++ ...|..++ +..|+.+
T Consensus 121 vd~~~LP~~~~~~~~~~~~~~~~ 143 (153)
T COG1246 121 VDKDELPEEVWSSYNFCERRSKC 143 (153)
T ss_pred CccccCCHHHHHHHHhhhhhhhH
Confidence 99743 56666643 4466655
No 6
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=98.83 E-value=1.8e-09 Score=126.91 Aligned_cols=111 Identities=27% Similarity=0.693 Sum_probs=80.3
Q ss_pred ccccccCCC-----CcEecCC--CCCcCCCCCCCCcCCCCCCCCCCCcc---------ccccCCCCCCCCC---------
Q 001460 720 TCGICGDGG-----DLICCDG--CPSTFHQSCLDIQMLPPGDWHCPNCT---------CKFCGLAGEDDAE--------- 774 (1074)
Q Consensus 720 ~C~VCgdGG-----dLLcCD~--CprafH~~CL~p~~vP~g~W~Cp~C~---------C~~Cg~~~~d~~e--------- 774 (1074)
-|.||.|.. -|+.||+ |.-+.|+.|+++..||.|+|||..|. |.+|.-.++....
T Consensus 7 GCCVCSDErGWaeNPLVYCDG~nCsVAVHQaCYGIvqVPtGpWfCrKCesqeraarvrCeLCP~kdGALKkTDn~GWAHV 86 (900)
T KOG0956|consen 7 GCCVCSDERGWAENPLVYCDGHNCSVAVHQACYGIVQVPTGPWFCRKCESQERAARVRCELCPHKDGALKKTDNGGWAHV 86 (900)
T ss_pred ceeeecCcCCCccCceeeecCCCceeeeehhcceeEecCCCchhhhhhhhhhhhccceeecccCcccceecccCCCceEE
Confidence 588998742 3999996 99999999999999999999999996 7777533321110
Q ss_pred ------------------------------------------CCCCCCcccccCC--cchhhhhhhccccccccccCCCC
Q 001460 775 ------------------------------------------GDDTTTSALLPCA--MCEKKYHKLCMQEMDALSDNLTG 810 (1074)
Q Consensus 775 ------------------------------------------ed~~s~~~Ll~Cd--QCer~YHv~CL~~~d~~p~~~~p 810 (1074)
+.....+..|.|+ -|.+.||+.|.+....++++...
T Consensus 87 VCALYIPEVrFgNV~TMEPIiLq~VP~dRfnKtCYIC~E~GrpnkA~~GACMtCNKs~CkqaFHVTCAQ~~GLLCEE~gn 166 (900)
T KOG0956|consen 87 VCALYIPEVRFGNVHTMEPIILQDVPHDRFNKTCYICNEEGRPNKAAKGACMTCNKSGCKQAFHVTCAQRAGLLCEEEGN 166 (900)
T ss_pred EEEeeccceeecccccccceeeccCchhhhcceeeeecccCCccccccccceecccccchhhhhhhHhhhhccceecccc
Confidence 0011224467775 49999999999877666666422
Q ss_pred --CccceeCCcchhhHHHHHhHh
Q 001460 811 --LVTSFCGRKCQELSEHLQKYL 831 (1074)
Q Consensus 811 --~~~WFCs~~CkeI~e~LqklL 831 (1074)
.-.-|| .+|+.+|.+|.+--
T Consensus 167 ~~dNVKYC-GYCk~HfsKlkk~~ 188 (900)
T KOG0956|consen 167 ISDNVKYC-GYCKYHFSKLKKSP 188 (900)
T ss_pred ccccceec-hhHHHHHHHhhcCC
Confidence 234566 59999999887653
No 7
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription]
Probab=98.73 E-value=2.4e-09 Score=115.56 Aligned_cols=93 Identities=28% Similarity=0.694 Sum_probs=73.5
Q ss_pred cccccccccC----------CCCcEecCCCCCcCCCCCCCCc-----CCCCCCCCCCCcc-ccccCCCCCCCCCCCCCCC
Q 001460 717 NDDTCGICGD----------GGDLICCDGCPSTFHQSCLDIQ-----MLPPGDWHCPNCT-CKFCGLAGEDDAEGDDTTT 780 (1074)
Q Consensus 717 ndd~C~VCgd----------GGdLLcCD~CprafH~~CL~p~-----~vP~g~W~Cp~C~-C~~Cg~~~~d~~eed~~s~ 780 (1074)
+...|-.|-. +.+|+-|..|.++=|+.||... .|-...|+|..|+ |.+||....+
T Consensus 223 Pn~YCDFclgdsr~nkkt~~peelvscsdcgrsghpsclqft~nm~~avk~yrwqcieck~csicgtsend--------- 293 (336)
T KOG1244|consen 223 PNPYCDFCLGDSRENKKTGMPEELVSCSDCGRSGHPSCLQFTANMIAAVKTYRWQCIECKYCSICGTSEND--------- 293 (336)
T ss_pred CCcccceeccccccccccCCchhhcchhhcCCCCCcchhhhhHHHHHHHHhheeeeeecceeccccCcCCC---------
Confidence 3467888853 3469999999999999999753 3556889999998 8889876543
Q ss_pred cccccCCcchhhhhhhccccccccccCCCCCccceeCCcchhh
Q 001460 781 SALLPCAMCEKKYHKLCMQEMDALSDNLTGLVTSFCGRKCQEL 823 (1074)
Q Consensus 781 ~~Ll~CdQCer~YHv~CL~~~d~~p~~~~p~~~WFCs~~CkeI 823 (1074)
.++++|+-|++.||..||.+ |....|.+.|-| ..|.+.
T Consensus 294 dqllfcddcdrgyhmyclsp----pm~eppegswsc-~KOG~~ 331 (336)
T KOG1244|consen 294 DQLLFCDDCDRGYHMYCLSP----PMVEPPEGSWSC-HLCLEE 331 (336)
T ss_pred ceeEeecccCCceeeEecCC----CcCCCCCCchhH-HHHHHH
Confidence 46999999999999999986 455668899988 466543
No 8
>PRK07757 acetyltransferase; Provisional
Probab=98.73 E-value=5.1e-08 Score=94.52 Aligned_cols=97 Identities=21% Similarity=0.293 Sum_probs=83.6
Q ss_pred EEEeeCCeEEEEEEEEEecCeeEEeeeeeeeccccccChhHHHHHHHHHHHhhcCceEEEEcchhhhHHHhhhccCcEEc
Q 001460 916 AILERGDEIISAASIRFHGTQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAIAELMHTWTRVFGFTSL 995 (1074)
Q Consensus 916 ~VLe~~devVsaAsiRV~G~~~AElPlvAT~~~yRrQGmgR~Lv~aIE~~L~~LgVe~LvlpA~~ea~~~Wt~kFGF~~m 995 (1074)
+|+..++++|+.+.+.+.+...+++=.|+|.|+|||+|+|+.|+.++++.+...|+.++++-. .+..+|. ++||+++
T Consensus 44 ~i~~~~~~lvG~~~l~~~~~~~~~i~~v~V~p~~rg~Glg~~Ll~~l~~~a~~~g~~~i~~~~--~~~~~Y~-k~GF~~~ 120 (152)
T PRK07757 44 YVAEEEGEIVGCCALHILWEDLAEIRSLAVSEDYRGQGIGRMLVEACLEEARELGVKRVFALT--YQPEFFE-KLGFREV 120 (152)
T ss_pred EEEEECCEEEEEEEEEeccCCceEEEEEEECHHHcCCCHHHHHHHHHHHHHHhCCCCeEEEEe--CcHHHHH-HCCCEEc
Confidence 345678999999999998888899999999999999999999999999999999999987543 3467898 6999999
Q ss_pred cHH--HHHhhhc-cceeeecCcc
Q 001460 996 EES--LKQEMRS-LNMLVFPGID 1015 (1074)
Q Consensus 996 ~~~--~k~~~~~-~~ll~FpGt~ 1015 (1074)
... ....|.+ .-|+.||.|+
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~ 143 (152)
T PRK07757 121 DKEALPQKVWADCIKCPKFPNCD 143 (152)
T ss_pred ccccCChhHHhcCccCCCCCCcc
Confidence 873 3788887 5689999993
No 9
>PRK10314 putative acyltransferase; Provisional
Probab=98.70 E-value=6e-08 Score=96.91 Aligned_cols=80 Identities=16% Similarity=0.181 Sum_probs=70.0
Q ss_pred EEeeCCeEEEEEEEEEecC--eeEEeeeeeeeccccccChhHHHHHHHHHHHhhc-CceEEEEcchhhhHHHhhhccCcE
Q 001460 917 ILERGDEIISAASIRFHGT--QLAEMPFIGTRHIYRRQGMCRRLFCALESALCSL-KVEKLIIPAIAELMHTWTRVFGFT 993 (1074)
Q Consensus 917 VLe~~devVsaAsiRV~G~--~~AElPlvAT~~~yRrQGmgR~Lv~aIE~~L~~L-gVe~LvlpA~~ea~~~Wt~kFGF~ 993 (1074)
++..++++||+|.+...+. ..++|--|||.++|||||+|+.||.++++.++.. +...++|.|...++.||. +|||.
T Consensus 52 ~~~~~~~~vg~~r~~~~~~~~~~~~i~rv~V~~~~rG~GiG~~Lm~~~~~~~~~~~~~~~i~L~a~~~a~~fY~-k~GF~ 130 (153)
T PRK10314 52 LGWKNDELVAYARILKSDDDLEPVVIGRVIVSEALRGEKVGQQLMSKTLESCTRHWPDKPVYLGAQAHLQNFYQ-SFGFI 130 (153)
T ss_pred EEEECCEEEEEEEEecCCCCCCCEEEEEEEECHHHhCCCHHHHHHHHHHHHHHHHCCCCcEEEehHHHHHHHHH-HCCCE
Confidence 4456899999999876543 3588999999999999999999999999998875 788999999999999999 69999
Q ss_pred EccH
Q 001460 994 SLEE 997 (1074)
Q Consensus 994 ~m~~ 997 (1074)
++.+
T Consensus 131 ~~g~ 134 (153)
T PRK10314 131 PVTE 134 (153)
T ss_pred ECCC
Confidence 9986
No 10
>PTZ00330 acetyltransferase; Provisional
Probab=98.61 E-value=1.1e-07 Score=91.02 Aligned_cols=83 Identities=20% Similarity=0.286 Sum_probs=72.0
Q ss_pred eEEEEeeCCeEEEEEEEEEe------cCeeEEeeeeeeeccccccChhHHHHHHHHHHHhhcCceEEEEcchhhhHHHhh
Q 001460 914 YTAILERGDEIISAASIRFH------GTQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAIAELMHTWT 987 (1074)
Q Consensus 914 YT~VLe~~devVsaAsiRV~------G~~~AElPlvAT~~~yRrQGmgR~Lv~aIE~~L~~LgVe~LvlpA~~ea~~~Wt 987 (1074)
+.++.+.++++|+.+.+.+. +..+++|--+.+.++|||||+|+.||..+++.+...|+..|++.+...+..+|+
T Consensus 53 ~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~~~i~~~~V~~~~rg~Gig~~l~~~~~~~a~~~~~~~l~l~~n~~a~~~y~ 132 (147)
T PTZ00330 53 RVFVHSPTQRIVGTASLFVEPKFTRGGKCVGHIEDVVVDPSYRGQGLGRALISDLCEIARSSGCYKVILDCTEDMVAFYK 132 (147)
T ss_pred EEEEEeCCCEEEEEEEEEeccccccCCCceEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEecChHHHHHHH
Confidence 44555678999999988653 223577888999999999999999999999999999999999999999999999
Q ss_pred hccCcEEccH
Q 001460 988 RVFGFTSLEE 997 (1074)
Q Consensus 988 ~kFGF~~m~~ 997 (1074)
++||...+.
T Consensus 133 -k~GF~~~~~ 141 (147)
T PTZ00330 133 -KLGFRACER 141 (147)
T ss_pred -HCCCEEece
Confidence 699998875
No 11
>PRK10146 aminoalkylphosphonic acid N-acetyltransferase; Provisional
Probab=98.54 E-value=2.5e-07 Score=88.14 Aligned_cols=81 Identities=9% Similarity=0.039 Sum_probs=69.1
Q ss_pred EEEEeeCCeEEEEEEEEEec-----CeeEEeeeeeeeccccccChhHHHHHHHHHHHhhcCceEEEEcch---hhhHHHh
Q 001460 915 TAILERGDEIISAASIRFHG-----TQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAI---AELMHTW 986 (1074)
Q Consensus 915 T~VLe~~devVsaAsiRV~G-----~~~AElPlvAT~~~yRrQGmgR~Lv~aIE~~L~~LgVe~LvlpA~---~ea~~~W 986 (1074)
.+|++.++++||++.+.... ...++|--|+|.|+|||||+|+.||..+++.++..|+..+.|... ..|..||
T Consensus 49 ~~v~~~~~~ivG~~~~~~~~~~~~~~~~~~i~~l~v~p~~rg~GiG~~Ll~~~~~~a~~~~~~~i~l~~~~~n~~a~~fY 128 (144)
T PRK10146 49 YHLALLDGEVVGMIGLHLQFHLHHVNWIGEIQELVVMPQARGLNVGSKLLAWAEEEARQAGAEMTELSTNVKRHDAHRFY 128 (144)
T ss_pred EEEEEECCEEEEEEEEEecccccccchhheeheeEECHHHcCCCHHHHHHHHHHHHHHHcCCcEEEEecCCCchHHHHHH
Confidence 35677899999999987632 235788889999999999999999999999999999999998765 4799999
Q ss_pred hhccCcEEcc
Q 001460 987 TRVFGFTSLE 996 (1074)
Q Consensus 987 t~kFGF~~m~ 996 (1074)
. ++||....
T Consensus 129 ~-~~Gf~~~~ 137 (144)
T PRK10146 129 L-REGYEQSH 137 (144)
T ss_pred H-HcCCchhh
Confidence 9 69997654
No 12
>PRK03624 putative acetyltransferase; Provisional
Probab=98.52 E-value=3.5e-07 Score=85.32 Aligned_cols=83 Identities=16% Similarity=0.292 Sum_probs=69.5
Q ss_pred ceEEEEeeCCeEEEEEEEEEecCeeEEeeeeeeeccccccChhHHHHHHHHHHHhhcCceEEEEcch---hhhHHHhhhc
Q 001460 913 FYTAILERGDEIISAASIRFHGTQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAI---AELMHTWTRV 989 (1074)
Q Consensus 913 FYT~VLe~~devVsaAsiRV~G~~~AElPlvAT~~~yRrQGmgR~Lv~aIE~~L~~LgVe~LvlpA~---~ea~~~Wt~k 989 (1074)
.+.+|+..++++||.+.+...+ ..+.+..|+|.++|||||+|+.|+..+++.+..+|+..+++... +.++.+|. +
T Consensus 45 ~~~~v~~~~~~~vG~~~~~~~~-~~~~i~~i~v~p~~rg~Gig~~ll~~~~~~~~~~~~~~~~~~~~~~N~~~~~~y~-k 122 (140)
T PRK03624 45 SLFLVAEVGGEVVGTVMGGYDG-HRGWAYYLAVHPDFRGRGIGRALVARLEKKLIARGCPKINLQVREDNDAVLGFYE-A 122 (140)
T ss_pred ceEEEEEcCCcEEEEEEeeccC-CCceEEEEEECHHHhCCCHHHHHHHHHHHHHHHCCCCEEEEEEecCcHHHHHHHH-H
Confidence 3556777889999999887544 45778889999999999999999999999999999999877655 45889998 7
Q ss_pred cCcEEccH
Q 001460 990 FGFTSLEE 997 (1074)
Q Consensus 990 FGF~~m~~ 997 (1074)
+||+..+.
T Consensus 123 ~GF~~~~~ 130 (140)
T PRK03624 123 LGYEEQDR 130 (140)
T ss_pred cCCccccE
Confidence 99997653
No 13
>PLN02706 glucosamine 6-phosphate N-acetyltransferase
Probab=98.49 E-value=6.7e-07 Score=86.62 Aligned_cols=82 Identities=17% Similarity=0.235 Sum_probs=68.5
Q ss_pred eEEEEee--CCeEEEEEEEEEec------CeeEEeeeeeeeccccccChhHHHHHHHHHHHhhcCceEEEEcchhhhHHH
Q 001460 914 YTAILER--GDEIISAASIRFHG------TQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAIAELMHT 985 (1074)
Q Consensus 914 YT~VLe~--~devVsaAsiRV~G------~~~AElPlvAT~~~yRrQGmgR~Lv~aIE~~L~~LgVe~LvlpA~~ea~~~ 985 (1074)
|.+|.+. +++||+.+.+.+.. ..++.+--|++.++|||||+|+.|++++++.+..+|+++|++...++...+
T Consensus 54 ~~~~~~~~~~~~ivG~~~~~~~~~~~~~~~~~~~i~~i~V~~~~rg~GiG~~ll~~~~~~a~~~g~~~i~l~~~~~N~~~ 133 (150)
T PLN02706 54 LICVIEDAASGRIIATGSVFVERKFIRNCGKVGHIEDVVVDSAARGKGLGKKIIEALTEHARSAGCYKVILDCSEENKAF 133 (150)
T ss_pred EEEEEEeCCCCcEEEEEEEEEEeecccCCCcEEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEEeccccHHH
Confidence 4444454 68999999885432 245677779999999999999999999999999999999999998888999
Q ss_pred hhhccCcEEcc
Q 001460 986 WTRVFGFTSLE 996 (1074)
Q Consensus 986 Wt~kFGF~~m~ 996 (1074)
|. ++||....
T Consensus 134 y~-k~GF~~~g 143 (150)
T PLN02706 134 YE-KCGYVRKE 143 (150)
T ss_pred HH-HCcCEEeh
Confidence 99 69998753
No 14
>PF13527 Acetyltransf_9: Acetyltransferase (GNAT) domain; PDB: 3SXN_C 2I00_D 1M4D_B 1M44_A 1M4G_B 1M4I_A 2OZG_A 2HV2_F 3N7Z_A 3RYO_B ....
Probab=98.45 E-value=1.3e-06 Score=81.88 Aligned_cols=112 Identities=18% Similarity=0.175 Sum_probs=79.0
Q ss_pred hhhHHHhhhhcccccccccCCCCcccchhhhccCCCCcccccCcceEEEEeeCCeEEEEEEEEE-----ecC--eeEEee
Q 001460 869 KLAVALNVMDECFLPIVDRRSGINLIHNVLYNSGSNFNRLNYSGFYTAILERGDEIISAASIRF-----HGT--QLAEMP 941 (1074)
Q Consensus 869 KLAvALtIm~ECF~PIvD~rTGrDLIpdmVYn~GSnFkRldF~GFYT~VLe~~devVsaAsiRV-----~G~--~~AElP 941 (1074)
.......++.+||.+-.++. ..+-|. ..-+.--+++|...+++|||.+.+-- .|. .++-|=
T Consensus 9 d~~~i~~l~~~~F~~~~~~~------~~~~~~------~~~~~~~~~~~~~~~~~ivg~~~~~~~~~~~~g~~~~~~~i~ 76 (127)
T PF13527_consen 9 DFEQIIELFNEAFGDSESPP------EIWEYF------RNLYGPGRCVVAEDDGKIVGHVGLIPRRLSVGGKKFKAAYIG 76 (127)
T ss_dssp GHHHHHHHHHHHTTT-CHHH------HHHHHH------HHHHHTTEEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEEE
T ss_pred HHHHHHHHHHHHCCCCCCch------hhhhhh------hcccCcCcEEEEEECCEEEEEEEEEEEEEEECCEEEEEEEEE
Confidence 34445567788887554432 112220 00112236788888999999887633 354 579999
Q ss_pred eeeeeccccccChhHHHHHHHHHHHhhcCceEEEEcchhhhHHHhhhccCcEEc
Q 001460 942 FIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAIAELMHTWTRVFGFTSL 995 (1074)
Q Consensus 942 lvAT~~~yRrQGmgR~Lv~aIE~~L~~LgVe~LvlpA~~ea~~~Wt~kFGF~~m 995 (1074)
-|||.|+|||||+++.||.++++.++..|+..+++-+ ...++|. +|||..+
T Consensus 77 ~v~v~p~~R~~Gl~~~L~~~~~~~~~~~g~~~~~l~~--~~~~~Y~-~~G~~~~ 127 (127)
T PF13527_consen 77 DVAVDPEYRGRGLGRQLMRALLERARERGVPFIFLFP--SSPPFYR-RFGFEYA 127 (127)
T ss_dssp EEEE-GGGTTSSHHHHHHHHHHHHHHHTT-SEEEEE---SSHHHHH-HTTEEEE
T ss_pred EEEECHHHcCCCHHHHHHHHHHHHHHhCCCCEEEEec--CChhhhh-cCCCEEC
Confidence 9999999999999999999999999999999999877 4468998 6999864
No 15
>PRK07922 N-acetylglutamate synthase; Validated
Probab=98.44 E-value=7.8e-07 Score=90.09 Aligned_cols=80 Identities=14% Similarity=0.240 Sum_probs=70.4
Q ss_pred EEEEe-eCCeEEEEEEEEEecCeeEEeeeeeeeccccccChhHHHHHHHHHHHhhcCceEEEEcchhhhHHHhhhccCcE
Q 001460 915 TAILE-RGDEIISAASIRFHGTQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAIAELMHTWTRVFGFT 993 (1074)
Q Consensus 915 T~VLe-~~devVsaAsiRV~G~~~AElPlvAT~~~yRrQGmgR~Lv~aIE~~L~~LgVe~LvlpA~~ea~~~Wt~kFGF~ 993 (1074)
++|++ .++++|+.+.+.+.....++|-.+++.++|||+|+|+.||+++++.++..|+.+|++... +..+|+ ++||.
T Consensus 47 ~~va~~~~~~iiG~~~~~~~~~~~~~i~~l~V~p~~rgkGiG~~Ll~~~~~~a~~~g~~~l~~~~~--~~~fY~-k~GF~ 123 (169)
T PRK07922 47 FWVAEHLDGEVVGCGALHVMWEDLAEIRTVAVDPAARGRGVGHAIVERLLDVARELGLSRVFVLTF--EVEFFA-RHGFV 123 (169)
T ss_pred EEEEEecCCcEEEEEEEeecCCCceEEEEEEECHHHhCCCHHHHHHHHHHHHHHHcCCCEEEEEec--cHHHHH-HCCCE
Confidence 34666 889999999988777788999999999999999999999999999999999999987543 478999 69999
Q ss_pred EccH
Q 001460 994 SLEE 997 (1074)
Q Consensus 994 ~m~~ 997 (1074)
.+..
T Consensus 124 ~~~~ 127 (169)
T PRK07922 124 EIDG 127 (169)
T ss_pred ECcc
Confidence 9864
No 16
>TIGR01575 rimI ribosomal-protein-alanine acetyltransferase. Members of this model belong to the GCN5-related N-acetyltransferase (GNAT) superfamily. This model covers prokarotes and the archaea. The seed contains a characterized accession for Gram negative E. coli. An untraceable characterized accession (PIR|S66013) for Gram positive B. subtilis scores well (205.0) in the full alignment. Characterized members are lacking in the archaea. Noise cutoff (72.4) was set to exclude M. loti paralog of rimI. Trusted cutoff (80.0) was set at next highest scoring member in the mini-database.
Probab=98.44 E-value=1.4e-06 Score=80.68 Aligned_cols=80 Identities=16% Similarity=0.246 Sum_probs=68.2
Q ss_pred EEEeeCCeEEEEEEEEEecCeeEEeeeeeeeccccccChhHHHHHHHHHHHhhcCceEEEEc---chhhhHHHhhhccCc
Q 001460 916 AILERGDEIISAASIRFHGTQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIP---AIAELMHTWTRVFGF 992 (1074)
Q Consensus 916 ~VLe~~devVsaAsiRV~G~~~AElPlvAT~~~yRrQGmgR~Lv~aIE~~L~~LgVe~Lvlp---A~~ea~~~Wt~kFGF 992 (1074)
+++..++++||.+.+.... ....+-.++|.++|||||+|+.|+.++++.+...++..+++. +-..+..+|+ ++||
T Consensus 34 ~~~~~~~~~vg~~~~~~~~-~~~~i~~~~v~~~~rg~G~g~~ll~~~~~~~~~~~~~~i~~~~~~~n~~~~~~y~-~~Gf 111 (131)
T TIGR01575 34 LLARIGGKVVGYAGVQIVL-DEAHILNIAVKPEYQGQGIGRALLRELIDEAKGRGVNEIFLEVRVSNIAAQALYK-KLGF 111 (131)
T ss_pred EEEecCCeEEEEEEEEecC-CCeEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCeEEEEEecccHHHHHHHH-HcCC
Confidence 4455689999999987644 457788899999999999999999999999999999999984 4556889999 6999
Q ss_pred EEccH
Q 001460 993 TSLEE 997 (1074)
Q Consensus 993 ~~m~~ 997 (1074)
+.+..
T Consensus 112 ~~~~~ 116 (131)
T TIGR01575 112 NEIAI 116 (131)
T ss_pred Ccccc
Confidence 98764
No 17
>cd02169 Citrate_lyase_ligase Citrate lyase ligase. Citrate lyase ligase, also known as [Citrate (pro-3S)-lyase] ligase, is responsible for acetylation of the (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) prosthetic group of the gamma subunit of citrate lyase, converting the inactive thiol form of this enzyme to the active form. The acetylation of 1 molecule of deacetyl-citrate lyase to enzymatically active citrate lyase requires 6 molecules of ATP. The Adenylylyltranferase activity of the enzyme involves the formation of AMP and and pyrophosphate in the acetylation reaction.
Probab=98.42 E-value=6.5e-07 Score=99.39 Aligned_cols=76 Identities=17% Similarity=0.308 Sum_probs=68.5
Q ss_pred EEEEeeCCeEEEEEEEEEecCeeEEeeeeeeeccccccChhHHHHHHHHHHHhhcCceEEEEcchhhhHHHhhhccCcEE
Q 001460 915 TAILERGDEIISAASIRFHGTQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAIAELMHTWTRVFGFTS 994 (1074)
Q Consensus 915 T~VLe~~devVsaAsiRV~G~~~AElPlvAT~~~yRrQGmgR~Lv~aIE~~L~~LgVe~LvlpA~~ea~~~Wt~kFGF~~ 994 (1074)
.+|.+.+++||+++.+. + .+|..|||.|+|||||+|+.||+++++.++..|+.+++|.+...+..+|. ++||..
T Consensus 8 ~~v~~~~~~iVG~~~l~--~---~~I~~vaV~p~~Rg~GiG~~Ll~~l~~~a~~~g~~~i~L~t~~~~~~fYe-k~GF~~ 81 (297)
T cd02169 8 VGIFDDAGELIATGSIA--G---NVLKCVAVCPKYQGEGLALKIVSELINKAYEEGIFHLFLFTKPKNAKFFR-GLGFKE 81 (297)
T ss_pred EEEEEECCEEEEEEEec--c---CEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEEcccHHHHHH-HCCCEE
Confidence 34456779999999884 2 46889999999999999999999999999999999999999999999999 799998
Q ss_pred cc
Q 001460 995 LE 996 (1074)
Q Consensus 995 m~ 996 (1074)
+.
T Consensus 82 ~~ 83 (297)
T cd02169 82 LA 83 (297)
T ss_pred ec
Confidence 88
No 18
>PRK09491 rimI ribosomal-protein-alanine N-acetyltransferase; Provisional
Probab=98.37 E-value=2e-06 Score=83.12 Aligned_cols=85 Identities=20% Similarity=0.203 Sum_probs=71.1
Q ss_pred CcceEEEEeeCCeEEEEEEEEEecCeeEEeeeeeeeccccccChhHHHHHHHHHHHhhcCceEEEEcc---hhhhHHHhh
Q 001460 911 SGFYTAILERGDEIISAASIRFHGTQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPA---IAELMHTWT 987 (1074)
Q Consensus 911 ~GFYT~VLe~~devVsaAsiRV~G~~~AElPlvAT~~~yRrQGmgR~Lv~aIE~~L~~LgVe~LvlpA---~~ea~~~Wt 987 (1074)
.+|+..+++.++++|+.+.++.... .+++-.|++.++|||||+|+.|+..+++.+..+|+..+++.. -..+..+|.
T Consensus 38 ~~~~~~~~~~~~~~vG~~~~~~~~~-~~~~~~i~v~~~~rg~G~g~~ll~~~~~~~~~~~~~~~~~~~~~~N~~a~~~y~ 116 (146)
T PRK09491 38 ERYLNLKLTVNGQMAAFAITQVVLD-EATLFNIAVDPDYQRQGLGRALLEHLIDELEKRGVATLWLEVRASNAAAIALYE 116 (146)
T ss_pred cCceEEEEEECCeEEEEEEEEeecC-ceEEEEEEECHHHccCCHHHHHHHHHHHHHHHCCCcEEEEEEccCCHHHHHHHH
Confidence 4555566778899999999886654 466778899999999999999999999999999999988853 456889999
Q ss_pred hccCcEEccH
Q 001460 988 RVFGFTSLEE 997 (1074)
Q Consensus 988 ~kFGF~~m~~ 997 (1074)
++||..+..
T Consensus 117 -k~Gf~~~~~ 125 (146)
T PRK09491 117 -SLGFNEVTI 125 (146)
T ss_pred -HcCCEEeee
Confidence 699997764
No 19
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=98.37 E-value=5.5e-08 Score=114.85 Aligned_cols=115 Identities=23% Similarity=0.577 Sum_probs=79.8
Q ss_pred eeeCCCCceeecceeeeccCCccccCceeEeccCCcchhhhhHHhhhccccccccCCcccCCCCCCccccccccccCCC-
Q 001460 650 IHCGCCSKILTVSKFEIHAGSKLRQPFQNIYLDSGVSLLQCQIDAWNKLKESESIGFESVDVDGDDPNDDTCGICGDGG- 728 (1074)
Q Consensus 650 I~C~CC~kvfS~SeFE~HAG~k~r~Py~nI~L~~G~SLldCqI~aw~~q~~sEk~G~~~v~~d~dd~ndd~C~VCgdGG- 728 (1074)
..|.+|.+.+|+.+....+ ++.-|..||.++.| ..|..|+.+|
T Consensus 36 ~ac~~c~~~yH~~cvt~~~--------~~~~l~~gWrC~~c----------------------------rvCe~c~~~gD 79 (694)
T KOG4443|consen 36 LACSDCGQKYHPYCVTSWA--------QHAVLSGGWRCPSC----------------------------RVCEACGTTGD 79 (694)
T ss_pred hhhhhhcccCCcchhhHHH--------hHHHhcCCcccCCc----------------------------eeeeeccccCC
Confidence 4799999999888764311 12234456766655 3678887555
Q ss_pred --CcEecCCCCCcCCCCCCCCc--CCCCCCCCCCCcc-ccccCCCCCC-CC-----CCCCC------------------C
Q 001460 729 --DLICCDGCPSTFHQSCLDIQ--MLPPGDWHCPNCT-CKFCGLAGED-DA-----EGDDT------------------T 779 (1074)
Q Consensus 729 --dLLcCD~CprafH~~CL~p~--~vP~g~W~Cp~C~-C~~Cg~~~~d-~~-----eed~~------------------s 779 (1074)
.+++|+.|+.+||.+|..|+ .+|.+.|+|+.|. |..|...... .. ....+ .
T Consensus 80 ~~kf~~Ck~cDvsyh~yc~~P~~~~v~sg~~~ckk~~~c~qc~~~lpg~s~~~~~~~~~~~~c~s~~~cPvc~~~Y~~~e 159 (694)
T KOG4443|consen 80 PKKFLLCKRCDVSYHCYCQKPPNDKVPSGPWLCKKCTRCRQCDSTLPGLSLDLQEGYLQCAPCASLSYCPVCLIVYQDSE 159 (694)
T ss_pred cccccccccccccccccccCCccccccCcccccHHHHhhhhccccccccchhhhccCcccccccccccCchHHHhhhhcc
Confidence 49999999999999999996 4899999999996 7777643221 00 00000 0
Q ss_pred CcccccCCcchhhhhhhcccc
Q 001460 780 TSALLPCAMCEKKYHKLCMQE 800 (1074)
Q Consensus 780 ~~~Ll~CdQCer~YHv~CL~~ 800 (1074)
.-.++.|++|.+|-|..|..-
T Consensus 160 ~~~~~~c~~c~rwsh~~c~~~ 180 (694)
T KOG4443|consen 160 SLPMVCCSICQRWSHGGCDGI 180 (694)
T ss_pred chhhHHHHHhcccccCCCCcc
Confidence 123578899999999999663
No 20
>COG5141 PHD zinc finger-containing protein [General function prediction only]
Probab=98.33 E-value=2.3e-07 Score=106.50 Aligned_cols=58 Identities=41% Similarity=0.940 Sum_probs=49.1
Q ss_pred CccccccccccCCC-----CcEecCCCCCcCCCCCCCCcCCCCCCCCCCCcc--------ccccCCCCCCC
Q 001460 715 DPNDDTCGICGDGG-----DLICCDGCPSTFHQSCLDIQMLPPGDWHCPNCT--------CKFCGLAGEDD 772 (1074)
Q Consensus 715 d~ndd~C~VCgdGG-----dLLcCD~CprafH~~CL~p~~vP~g~W~Cp~C~--------C~~Cg~~~~d~ 772 (1074)
|.-++.|.+|.... -+++||+|.-+.|+.|.+++.+|+|.|+|..|. |.+|....+..
T Consensus 190 d~~d~~C~~c~~t~~eN~naiVfCdgC~i~VHq~CYGI~f~peG~WlCrkCi~~~~~i~~C~fCps~dGaF 260 (669)
T COG5141 190 DEFDDICTKCTSTHNENSNAIVFCDGCEICVHQSCYGIQFLPEGFWLCRKCIYGEYQIRCCSFCPSSDGAF 260 (669)
T ss_pred hhhhhhhHhccccccCCcceEEEecCcchhhhhhcccceecCcchhhhhhhcccccceeEEEeccCCCCce
Confidence 44577899997543 399999999999999999999999999999996 88997665543
No 21
>KOG4299 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.31 E-value=1.6e-07 Score=110.74 Aligned_cols=47 Identities=51% Similarity=1.363 Sum_probs=42.4
Q ss_pred ccccccccCCCCc---EecCCCCCcCCCCCCCCc----CCCCCCCCCCCccccc
Q 001460 718 DDTCGICGDGGDL---ICCDGCPSTFHQSCLDIQ----MLPPGDWHCPNCTCKF 764 (1074)
Q Consensus 718 dd~C~VCgdGGdL---LcCD~CprafH~~CL~p~----~vP~g~W~Cp~C~C~~ 764 (1074)
.++|..|+..|.. ||||+||.+||+.||+|| .+|.|.|+|+.|.|..
T Consensus 253 ~~fCsaCn~~~~F~~~i~CD~Cp~sFH~~CLePPl~~eniP~g~W~C~ec~~k~ 306 (613)
T KOG4299|consen 253 EDFCSACNGSGLFNDIICCDGCPRSFHQTCLEPPLEPENIPPGSWFCPECKIKS 306 (613)
T ss_pred HHHHHHhCCccccccceeecCCchHHHHhhcCCCCCcccCCCCccccCCCeeee
Confidence 5699999999876 999999999999999987 4899999999998654
No 22
>PLN02825 amino-acid N-acetyltransferase
Probab=98.30 E-value=2.2e-06 Score=101.35 Aligned_cols=82 Identities=23% Similarity=0.253 Sum_probs=71.9
Q ss_pred EEEEeeCCeEEEEEEEEEecC-eeEEeeeeeeeccccccChhHHHHHHHHHHHhhcCceEEEEcchhhhHHHhhhccCcE
Q 001460 915 TAILERGDEIISAASIRFHGT-QLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAIAELMHTWTRVFGFT 993 (1074)
Q Consensus 915 T~VLe~~devVsaAsiRV~G~-~~AElPlvAT~~~yRrQGmgR~Lv~aIE~~L~~LgVe~LvlpA~~ea~~~Wt~kFGF~ 993 (1074)
.+|++.+++||++|.+..+.. ..|||=-|||.|+|||+|+|+.||+++|+.++.+|+++|++-. ..+..+|. ++||.
T Consensus 409 f~V~e~Dg~IVG~aal~~~~~~~~aEI~~laV~P~yRGkGiG~~LL~~le~~Ar~~G~~~L~Llt-t~a~~fY~-k~GF~ 486 (515)
T PLN02825 409 FVVVEREGSIIACAALFPFFEEKCGEVAAIAVSPECRGQGQGDKLLDYIEKKAASLGLEKLFLLT-TRTADWFV-RRGFS 486 (515)
T ss_pred EEEEEECCEEEEEEEEEeecCCCcEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEe-CcHHHHHH-HCCCE
Confidence 457899999999999876643 6899999999999999999999999999999999999999866 45778888 69999
Q ss_pred EccHH
Q 001460 994 SLEES 998 (1074)
Q Consensus 994 ~m~~~ 998 (1074)
..+.+
T Consensus 487 ~~~~~ 491 (515)
T PLN02825 487 ECSIE 491 (515)
T ss_pred EeChh
Confidence 98753
No 23
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription]
Probab=98.30 E-value=1.4e-07 Score=102.33 Aligned_cols=77 Identities=31% Similarity=0.741 Sum_probs=57.5
Q ss_pred CCeeeCCCCceeecceeeeccCCcc---ccCceeEeccCCcchhhhhHHhhhccccccccCCcccCCCCCCccccccccc
Q 001460 648 DGIHCGCCSKILTVSKFEIHAGSKL---RQPFQNIYLDSGVSLLQCQIDAWNKLKESESIGFESVDVDGDDPNDDTCGIC 724 (1074)
Q Consensus 648 ~GI~C~CC~kvfS~SeFE~HAG~k~---r~Py~nI~L~~G~SLldCqI~aw~~q~~sEk~G~~~v~~d~dd~ndd~C~VC 724 (1074)
+-|.|+.|...=|||++..-|.+.. +.-|+.| +| ..|.+|
T Consensus 245 elvscsdcgrsghpsclqft~nm~~avk~yrwqci---------ec----------------------------k~csic 287 (336)
T KOG1244|consen 245 ELVSCSDCGRSGHPSCLQFTANMIAAVKTYRWQCI---------EC----------------------------KYCSIC 287 (336)
T ss_pred hhcchhhcCCCCCcchhhhhHHHHHHHHhheeeee---------ec----------------------------ceeccc
Confidence 4579999999999988755555431 1222222 33 368899
Q ss_pred cCCC---CcEecCCCCCcCCCCCCCCcC--CCCCCCCCCCcc
Q 001460 725 GDGG---DLICCDGCPSTFHQSCLDIQM--LPPGDWHCPNCT 761 (1074)
Q Consensus 725 gdGG---dLLcCD~CprafH~~CL~p~~--vP~g~W~Cp~C~ 761 (1074)
|... +||+||.|++.||++||.|++ .|+|.|.|..|.
T Consensus 288 gtsenddqllfcddcdrgyhmyclsppm~eppegswsc~KOG 329 (336)
T KOG1244|consen 288 GTSENDDQLLFCDDCDRGYHMYCLSPPMVEPPEGSWSCHLCL 329 (336)
T ss_pred cCcCCCceeEeecccCCceeeEecCCCcCCCCCCchhHHHHH
Confidence 8654 599999999999999999986 588999998774
No 24
>TIGR03827 GNAT_ablB putative beta-lysine N-acetyltransferase. Members of this protein family are GNAT family acetyltransferases, based on a seed alignment in which every member is associated with a lysine 2,3-aminomutase family protein, usually as the adjacent gene. This family includes AblB, the enzyme beta-lysine acetyltransferase that completes the two-step synthesis of the osmolyte (compatible solute) N-epsilon-acetyl-beta-lysine; all members of the family may have this function. Note that N-epsilon-acetyl-beta-lysine has been observed only in methanogenic archaea (e.g. Methanosarcina) but that this model, paired with TIGR03820, suggests a much broader distribution.
Probab=98.29 E-value=3e-06 Score=91.52 Aligned_cols=85 Identities=24% Similarity=0.235 Sum_probs=71.2
Q ss_pred cceEEEEeeCCeEEEEEEEEEe-cCeeEEeeeeeeeccccccChhHHHHHHHHHHHhhcCceEEEEcchhhh---HHHhh
Q 001460 912 GFYTAILERGDEIISAASIRFH-GTQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAIAEL---MHTWT 987 (1074)
Q Consensus 912 GFYT~VLe~~devVsaAsiRV~-G~~~AElPlvAT~~~yRrQGmgR~Lv~aIE~~L~~LgVe~LvlpA~~ea---~~~Wt 987 (1074)
+.+.++++.++++||++++.+. +...+||=-|||.|+|||||+|+.||..+++.+...|+..+++.+.... ..++.
T Consensus 157 ~~~~~v~~~~g~iVG~~~~~~~~~~~~~eI~~i~V~P~yRG~GiG~~Ll~~l~~~a~~~g~~~l~~~~~~~n~~a~~ly~ 236 (266)
T TIGR03827 157 NVVYFGVEDGGKIIALASAEMDPENGNAEMTDFATLPEYRGKGLAKILLAAMEKEMKEKGIRTAYTIARASSYGMNITFA 236 (266)
T ss_pred CcEEEEEEECCEEEEEEEEecCCCCCcEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCcEEEeehhhcchhHHHHHH
Confidence 4455677789999999998653 3357999999999999999999999999999999999999999887654 56787
Q ss_pred hccCcEEccH
Q 001460 988 RVFGFTSLEE 997 (1074)
Q Consensus 988 ~kFGF~~m~~ 997 (1074)
++||.....
T Consensus 237 -k~GF~~~G~ 245 (266)
T TIGR03827 237 -RLGYAYGGT 245 (266)
T ss_pred -HcCCccccE
Confidence 799997543
No 25
>PRK10975 TDP-fucosamine acetyltransferase; Provisional
Probab=98.28 E-value=3.9e-06 Score=85.79 Aligned_cols=85 Identities=11% Similarity=0.039 Sum_probs=71.3
Q ss_pred CcceEEEEeeCCeEEEEEEEEEecCeeEEeeeeeeeccccccChhHHHHHHHHHHHhhcCceEEEEcch---hhhHHHhh
Q 001460 911 SGFYTAILERGDEIISAASIRFHGTQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAI---AELMHTWT 987 (1074)
Q Consensus 911 ~GFYT~VLe~~devVsaAsiRV~G~~~AElPlvAT~~~yRrQGmgR~Lv~aIE~~L~~LgVe~LvlpA~---~ea~~~Wt 987 (1074)
..++.++.+.++++|+.+.+.......++|-.+++.++|||||+|+.|+..+++.+...|+.++++... ..+..+|.
T Consensus 100 ~~~~~v~~~~~g~~vG~~~l~~~~~~~~~i~~~~V~p~~rg~Gig~~Ll~~~~~~a~~~g~~~i~l~v~~~N~~a~~~ye 179 (194)
T PRK10975 100 DHQCLLLRDASGQIQGFVTLRELNDTDARIGLLAVFPGAQGRGIGARLMQAALNWCQARGLTRLRVATQMGNLAALRLYI 179 (194)
T ss_pred CCcEEEEEcCCCCEEEEEEEEecCCCceEEEEEEEChhhcCCCHHHHHHHHHHHHHHHcCCCEEEEEeCCCcHHHHHHHH
Confidence 334444555678999999998766667899999999999999999999999999999999999987644 46889998
Q ss_pred hccCcEEcc
Q 001460 988 RVFGFTSLE 996 (1074)
Q Consensus 988 ~kFGF~~m~ 996 (1074)
++||....
T Consensus 180 -k~Gf~~~~ 187 (194)
T PRK10975 180 -RSGANIES 187 (194)
T ss_pred -HCCCeEeE
Confidence 69999754
No 26
>TIGR01890 N-Ac-Glu-synth amino-acid N-acetyltransferase. This model represents a clade of amino-acid N-acetyltransferases acting mainly on glutamate in the first step of the "acetylated" ornithine biosynthesis pathway. For this reason it is also called N-acetylglutamate synthase. The enzyme may also act on aspartate.
Probab=98.27 E-value=2.9e-06 Score=97.80 Aligned_cols=81 Identities=20% Similarity=0.310 Sum_probs=71.1
Q ss_pred EEEeeCCeEEEEEEEEEec-CeeEEeeeeeeeccccccChhHHHHHHHHHHHhhcCceEEEEcchhhhHHHhhhccCcEE
Q 001460 916 AILERGDEIISAASIRFHG-TQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAIAELMHTWTRVFGFTS 994 (1074)
Q Consensus 916 ~VLe~~devVsaAsiRV~G-~~~AElPlvAT~~~yRrQGmgR~Lv~aIE~~L~~LgVe~LvlpA~~ea~~~Wt~kFGF~~ 994 (1074)
+|++.++++|+++.+..+. ...+||-.|+|.|+|||||+|+.||+++++.+.+.|+..|++-+. .+..||. ++||..
T Consensus 325 ~V~~~dg~iVG~~~~~~~~~~~~~~I~~l~V~p~~Rg~GiG~~Ll~~l~~~A~~~G~~~l~v~~~-~a~~fY~-k~GF~~ 402 (429)
T TIGR01890 325 SIIEHDGNIIGCAALYPYAEEDCGEMACLAVSPEYQDGGRGERLLAHIEDRARQMGISRLFVLTT-RTGHWFR-ERGFQT 402 (429)
T ss_pred EEEEECCEEEEEEEEEecCCCCeEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEeec-chHHHHH-HCCCEE
Confidence 3668899999999998774 368999999999999999999999999999999999999887654 4678998 699999
Q ss_pred ccHH
Q 001460 995 LEES 998 (1074)
Q Consensus 995 m~~~ 998 (1074)
+...
T Consensus 403 ~g~~ 406 (429)
T TIGR01890 403 ASVD 406 (429)
T ss_pred CChh
Confidence 9763
No 27
>TIGR00124 cit_ly_ligase [citrate (pro-3S)-lyase] ligase. ATP is cleaved to AMP and pyrophosphate during the reaction. The carboxyl end is homologous to a number of cytidyltransferases that also release pyrophosphate.
Probab=98.26 E-value=3.3e-06 Score=95.15 Aligned_cols=84 Identities=21% Similarity=0.269 Sum_probs=74.5
Q ss_pred ccCcceEEEEeeCCeEEEEEEEEEecCeeEEeeeeeeeccccccChhHHHHHHHHHHHhhcCceEEEEcchhhhHHHhhh
Q 001460 909 NYSGFYTAILERGDEIISAASIRFHGTQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAIAELMHTWTR 988 (1074)
Q Consensus 909 dF~GFYT~VLe~~devVsaAsiRV~G~~~AElPlvAT~~~yRrQGmgR~Lv~aIE~~L~~LgVe~LvlpA~~ea~~~Wt~ 988 (1074)
+..--|++++..+++||++|++ .|. .|.-|||.++|||+|+|+.||++|++.+...|+..++|.+.+....+|.
T Consensus 27 d~~~d~~vv~~~~~~lVg~g~l--~g~---~ik~vaV~~~~rG~Glg~~L~~~L~~~a~~~G~~~l~l~Tk~~~~~fy~- 100 (332)
T TIGR00124 27 DAPLEIFIAVYEDEEIIGCGGI--AGN---VIKCVAIDESLRGEGLALQLMTELENLAYELGRFHLFIFTKPEYAALFE- 100 (332)
T ss_pred cCCCCEEEEEEECCEEEEEEEE--ecC---EEEEEEEcHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEEECchHHHHHH-
Confidence 3344678888899999999997 452 4889999999999999999999999999999999999999999999998
Q ss_pred ccCcEEccHH
Q 001460 989 VFGFTSLEES 998 (1074)
Q Consensus 989 kFGF~~m~~~ 998 (1074)
++||..+...
T Consensus 101 klGF~~i~~~ 110 (332)
T TIGR00124 101 YCGFKTLAEA 110 (332)
T ss_pred HcCCEEeeee
Confidence 6999998853
No 28
>PRK05279 N-acetylglutamate synthase; Validated
Probab=98.22 E-value=4.8e-06 Score=96.19 Aligned_cols=80 Identities=23% Similarity=0.362 Sum_probs=70.3
Q ss_pred EEEeeCCeEEEEEEEEEec-CeeEEeeeeeeeccccccChhHHHHHHHHHHHhhcCceEEEEcchhhhHHHhhhccCcEE
Q 001460 916 AILERGDEIISAASIRFHG-TQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAIAELMHTWTRVFGFTS 994 (1074)
Q Consensus 916 ~VLe~~devVsaAsiRV~G-~~~AElPlvAT~~~yRrQGmgR~Lv~aIE~~L~~LgVe~LvlpA~~ea~~~Wt~kFGF~~ 994 (1074)
+|++.++++|+++.+..+. ...++|--|+|.|+|||||+|+.||+++++.++..|+..+++.+ ..+..||. +|||..
T Consensus 337 ~va~~dg~iVG~~~~~~~~~~~~~~I~~l~V~p~~Rg~GiG~~Ll~~l~~~a~~~g~~~l~l~~-~~a~~fY~-k~GF~~ 414 (441)
T PRK05279 337 TVIERDGLIIGCAALYPFPEEKMGEMACLAVHPDYRGSGRGERLLKRIEQRARQLGLKRLFVLT-TRTAHWFL-ERGFVP 414 (441)
T ss_pred EEEEECCEEEEEEEEEEcCCCCeEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEec-chHHHHHH-HCcCEE
Confidence 4677899999999887554 36799999999999999999999999999999999999998765 46889998 699999
Q ss_pred ccH
Q 001460 995 LEE 997 (1074)
Q Consensus 995 m~~ 997 (1074)
+..
T Consensus 415 ~g~ 417 (441)
T PRK05279 415 VDV 417 (441)
T ss_pred CCh
Confidence 976
No 29
>TIGR02382 wecD_rffC TDP-D-fucosamine acetyltransferase. This model represents the WecD protein (Formerly RffC) for the biosynthesis of enterobacterial common antigen (ECA), an outer leaflet, outer membrane glycolipid with a trisaccharide repeat unit. WecD is a member of the GNAT family of acetytransferases (pfam00583).
Probab=98.21 E-value=6.6e-06 Score=84.21 Aligned_cols=80 Identities=8% Similarity=0.033 Sum_probs=69.3
Q ss_pred EEEeeCCeEEEEEEEEEecCeeEEeeeeeeeccccccChhHHHHHHHHHHHhhcCceEEEEcch---hhhHHHhhhccCc
Q 001460 916 AILERGDEIISAASIRFHGTQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAI---AELMHTWTRVFGF 992 (1074)
Q Consensus 916 ~VLe~~devVsaAsiRV~G~~~AElPlvAT~~~yRrQGmgR~Lv~aIE~~L~~LgVe~LvlpA~---~ea~~~Wt~kFGF 992 (1074)
++++.++++||.+.+.......+++=.+++.++|||||+|+.|+.++++.+..+|+.+|++... ..++.+|. ++||
T Consensus 102 i~~~~~g~iiG~i~l~~~~~~~~~i~~l~V~p~~rGkG~G~~ll~~~~~~a~~~g~~~I~l~v~~~N~~A~~~Y~-klGF 180 (191)
T TIGR02382 102 ILRDASGDPRGYVTLRELNDTDARIGLLAVFPGAQSRGIGAELMQTALNWCYARGLTRLRVATQMGNTAALRLYI-RSGA 180 (191)
T ss_pred EEEccCCeEEEEEEEEecCCCceEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEEeCCCCHHHHHHHH-HcCC
Confidence 3456688999999998766567899999999999999999999999999999999999998754 45899999 7999
Q ss_pred EEcc
Q 001460 993 TSLE 996 (1074)
Q Consensus 993 ~~m~ 996 (1074)
+...
T Consensus 181 ~~~~ 184 (191)
T TIGR02382 181 NIES 184 (191)
T ss_pred cccc
Confidence 8654
No 30
>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription]
Probab=98.18 E-value=1.9e-07 Score=114.68 Aligned_cols=146 Identities=25% Similarity=0.523 Sum_probs=84.8
Q ss_pred eccCCCCCCCCCCCCccCCCcchh--hhhhhccCceeecceEEEeecccccceeeeeeecCCeeeCCCCceeecceeeec
Q 001460 590 IRNSNVGPNSETDGFVPYAGKLTL--LSWLIDSGTVQLSQKVQYMNRRRTKVMLEGWITRDGIHCGCCSKILTVSKFEIH 667 (1074)
Q Consensus 590 ~R~s~k~~~~~~~g~vP~~~kRTV--LSwLID~G~V~~~~kV~Y~n~~~~~~lL~G~it~~GI~C~CC~kvfS~SeFE~H 667 (1074)
.|..-++.+..++.|-|.+.+.++ .-+|||.-++++ +|+-|++.++-.=.---..| ..|-.|
T Consensus 240 LrA~lr~eD~~~Thfs~~d~KdsvnI~l~liD~lTWPe--------------vLrqY~ea~~~ad~~v~~~~--n~fv~~ 303 (1414)
T KOG1473|consen 240 LRALLREEDRLSTHFSPLDSKDSVNIDLYLIDTLTWPE--------------VLRQYFEADKHADGPVWDIF--NPFVVE 303 (1414)
T ss_pred HHHHhhhhhhcccccCccccccceeeeeehhccccHHH--------------HHHHHHHhccccCcchhhhh--cccccc
Confidence 566666778888999999999776 446788888753 34444444441000000001 122222
Q ss_pred cCCccccCceeEeccCCcchhhhhHHhhhccccccccCCcccCCCCCCccccccccccCCCCcEecCCCCCcCCCCCCCC
Q 001460 668 AGSKLRQPFQNIYLDSGVSLLQCQIDAWNKLKESESIGFESVDVDGDDPNDDTCGICGDGGDLICCDGCPSTFHQSCLDI 747 (1074)
Q Consensus 668 AG~k~r~Py~nI~L~~G~SLldCqI~aw~~q~~sEk~G~~~v~~d~dd~ndd~C~VCgdGGdLLcCD~CprafH~~CL~p 747 (1074)
-- .||.-| ++-.-++|.....+-.-..+. ..+..+++..-++.|.+|.+.|+++||..||+.||..|..+
T Consensus 304 ~e----Y~~~pv--~~klkILQ~L~Dq~l~~~s~R----~e~~se~~~~~ddhcrf~~d~~~~lc~Et~prvvhlEcv~h 373 (1414)
T KOG1473|consen 304 DE----YPYRPV--SNKLKILQFLCDQFLTVNSLR----DEIDSEGEIEYDDHCRFCHDLGDLLCCETCPRVVHLECVFH 373 (1414)
T ss_pred cc----ccccch--hhhHHHHHHHHHHHHHHHHHH----HHHhcccceeecccccccCcccceeecccCCceEEeeecCC
Confidence 11 122211 122233333222111000000 00122344456789999999999999999999999999998
Q ss_pred cC--CCCCCCCCCCcc
Q 001460 748 QM--LPPGDWHCPNCT 761 (1074)
Q Consensus 748 ~~--vP~g~W~Cp~C~ 761 (1074)
|. +|...|.|.-|.
T Consensus 374 P~~~~~s~~~e~evc~ 389 (1414)
T KOG1473|consen 374 PRFAVPSAFWECEVCN 389 (1414)
T ss_pred ccccCCCccchhhhhh
Confidence 74 889999999886
No 31
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=98.18 E-value=5.7e-07 Score=106.55 Aligned_cols=89 Identities=28% Similarity=0.824 Sum_probs=68.6
Q ss_pred cccccccccCCC-----CcEecCCCCCcCCCCCCCCcC---CCCCCCCCCCcc-ccccCCCCCCCCCCCCCCCcccccCC
Q 001460 717 NDDTCGICGDGG-----DLICCDGCPSTFHQSCLDIQM---LPPGDWHCPNCT-CKFCGLAGEDDAEGDDTTTSALLPCA 787 (1074)
Q Consensus 717 ndd~C~VCgdGG-----dLLcCD~CprafH~~CL~p~~---vP~g~W~Cp~C~-C~~Cg~~~~d~~eed~~s~~~Ll~Cd 787 (1074)
....|.+|+..| .|+.|..|...||.+|+.... +-.+.|.|+.|+ |..|+..+. ...+++|+
T Consensus 17 ~~~mc~l~~s~G~~~ag~m~ac~~c~~~yH~~cvt~~~~~~~l~~gWrC~~crvCe~c~~~gD---------~~kf~~Ck 87 (694)
T KOG4443|consen 17 VCLMCPLCGSSGKGRAGRLLACSDCGQKYHPYCVTSWAQHAVLSGGWRCPSCRVCEACGTTGD---------PKKFLLCK 87 (694)
T ss_pred hhhhhhhhccccccccCcchhhhhhcccCCcchhhHHHhHHHhcCCcccCCceeeeeccccCC---------cccccccc
Confidence 356888998655 499999999999999998532 223459999998 888984332 23579999
Q ss_pred cchhhhhhhccccccccccCCCCCccceeCC
Q 001460 788 MCEKKYHKLCMQEMDALSDNLTGLVTSFCGR 818 (1074)
Q Consensus 788 QCer~YHv~CL~~~d~~p~~~~p~~~WFCs~ 818 (1074)
.|+-.||.+|+.+ +....+.++|+|..
T Consensus 88 ~cDvsyh~yc~~P----~~~~v~sg~~~ckk 114 (694)
T KOG4443|consen 88 RCDVSYHCYCQKP----PNDKVPSGPWLCKK 114 (694)
T ss_pred cccccccccccCC----ccccccCcccccHH
Confidence 9999999999875 34455778999854
No 32
>PRK12308 bifunctional argininosuccinate lyase/N-acetylglutamate synthase; Provisional
Probab=98.17 E-value=6.1e-06 Score=99.39 Aligned_cols=81 Identities=21% Similarity=0.263 Sum_probs=71.9
Q ss_pred EEEEeeCCeEEEEEEEEEecCeeEEeeeeeeeccccccChhHHHHHHHHHHHhhcCceEEEEcchhhhHHHhhhccCcEE
Q 001460 915 TAILERGDEIISAASIRFHGTQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAIAELMHTWTRVFGFTS 994 (1074)
Q Consensus 915 T~VLe~~devVsaAsiRV~G~~~AElPlvAT~~~yRrQGmgR~Lv~aIE~~L~~LgVe~LvlpA~~ea~~~Wt~kFGF~~ 994 (1074)
.+|++.+++||+.+.+.+.....++|-.|+|.|+|||||+|+.||+.+++.++..|+..|++... +..||. +|||+.
T Consensus 505 ~~Va~~~g~IVG~~~l~~~~~~~~~I~~i~V~P~~rGkGIGk~Ll~~l~~~ak~~g~~~i~l~~~--a~~FYe-k~GF~~ 581 (614)
T PRK12308 505 FAVAEHHGEVTGCASLYIYDSGLAEIRSLGVEAGWQVQGQGSALVQYLVEKARQMAIKKVFVLTR--VPEFFM-KQGFSP 581 (614)
T ss_pred EEEEEECCEEEEEEEEEEcCCCeEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEeeC--cHHHHH-HCCCEE
Confidence 35778899999999998877678999999999999999999999999999999999999988653 568999 799998
Q ss_pred ccHH
Q 001460 995 LEES 998 (1074)
Q Consensus 995 m~~~ 998 (1074)
....
T Consensus 582 ~~~~ 585 (614)
T PRK12308 582 TSKS 585 (614)
T ss_pred CCcc
Confidence 8853
No 33
>PHA00673 acetyltransferase domain containing protein
Probab=98.13 E-value=1.2e-05 Score=82.15 Aligned_cols=84 Identities=18% Similarity=0.143 Sum_probs=72.7
Q ss_pred ceEEEEeeCCeEEEEEEEEEec------CeeEEeeeeeeeccccccChhHHHHHHHHHHHhhcCceEEEEcchhh--hHH
Q 001460 913 FYTAILERGDEIISAASIRFHG------TQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAIAE--LMH 984 (1074)
Q Consensus 913 FYT~VLe~~devVsaAsiRV~G------~~~AElPlvAT~~~yRrQGmgR~Lv~aIE~~L~~LgVe~LvlpA~~e--a~~ 984 (1074)
-..+|.+.+|+||+.+.+.+.. ...+.|=.|-|.+++||||+|+.||+.+++.++..|...|.|.|+|+ .+.
T Consensus 55 ~~llVa~~~g~vVG~~~l~~~p~l~~~~~~~~~Ie~l~V~~~~RGqGIG~~Ll~~A~~~Ar~~Gc~~lyis~~p~~~tv~ 134 (154)
T PHA00673 55 AHFLGVFRGEELVGFACLLVTPVPHFKGQLIGTTESIFVAAAHRPGGAGMALLRATEALARDLGATGLYVSGPTEGRLVQ 134 (154)
T ss_pred cEEEEEEECCEEEEEEEEEEecCCccCCccEEEEEEEEEChhccCCCHHHHHHHHHHHHHHHCCCCEEEEecCCCccchH
Confidence 3455667799999999887654 36778999999999999999999999999999999999999999986 899
Q ss_pred HhhhccCcEEccH
Q 001460 985 TWTRVFGFTSLEE 997 (1074)
Q Consensus 985 ~Wt~kFGF~~m~~ 997 (1074)
||. +.|+.....
T Consensus 135 fy~-~~g~~~~~~ 146 (154)
T PHA00673 135 LLP-AAGYRETNR 146 (154)
T ss_pred HHH-hCCchhhch
Confidence 999 599876543
No 34
>PRK10140 putative acetyltransferase YhhY; Provisional
Probab=98.08 E-value=2e-05 Score=76.27 Aligned_cols=86 Identities=13% Similarity=0.294 Sum_probs=68.8
Q ss_pred cceEEEEeeCCeEEEEEEEEEec----CeeEEeeeeeeeccccccChhHHHHHHHHHHHhh-cCceEEEEcch---hhhH
Q 001460 912 GFYTAILERGDEIISAASIRFHG----TQLAEMPFIGTRHIYRRQGMCRRLFCALESALCS-LKVEKLIIPAI---AELM 983 (1074)
Q Consensus 912 GFYT~VLe~~devVsaAsiRV~G----~~~AElPlvAT~~~yRrQGmgR~Lv~aIE~~L~~-LgVe~LvlpA~---~ea~ 983 (1074)
+.+++|++.++++|+.+.+.... ...+++- +++.++|||||+|+.|++.+++.+.. +|+.++++... ..++
T Consensus 50 ~~~~~v~~~~~~~vG~~~~~~~~~~~~~~~~~~~-~~v~p~~rg~Gig~~ll~~l~~~~~~~~~~~~i~l~v~~~N~~a~ 128 (162)
T PRK10140 50 GIKQLVACIDGDVVGHLTIDVQQRPRRSHVADFG-ICVDSRWKNRGVASALMREMIEMCDNWLRVDRIELTVFVDNAPAI 128 (162)
T ss_pred CcEEEEEEECCEEEEEEEEecccccccceEEEEE-EEECHHHcCCCHHHHHHHHHHHHHHhhCCccEEEEEEEcCCHHHH
Confidence 34667778899999999987531 2456664 89999999999999999999999888 79888776554 5678
Q ss_pred HHhhhccCcEEccHHH
Q 001460 984 HTWTRVFGFTSLEESL 999 (1074)
Q Consensus 984 ~~Wt~kFGF~~m~~~~ 999 (1074)
.++. ++||+......
T Consensus 129 ~~y~-k~GF~~~g~~~ 143 (162)
T PRK10140 129 KVYK-KYGFEIEGTGK 143 (162)
T ss_pred HHHH-HCCCEEEeecc
Confidence 8998 79999876543
No 35
>PRK09831 putative acyltransferase; Provisional
Probab=98.05 E-value=1.3e-05 Score=78.32 Aligned_cols=73 Identities=12% Similarity=0.164 Sum_probs=60.9
Q ss_pred EEEEeeCCeEEEEEEEEEecCeeEEeeeeeeeccccccChhHHHHHHHHHHHhhcCceEEEEcchhhhHHHhhhccCcEE
Q 001460 915 TAILERGDEIISAASIRFHGTQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAIAELMHTWTRVFGFTS 994 (1074)
Q Consensus 915 T~VLe~~devVsaAsiRV~G~~~AElPlvAT~~~yRrQGmgR~Lv~aIE~~L~~LgVe~LvlpA~~ea~~~Wt~kFGF~~ 994 (1074)
.+|+..++++|+.+.+.. +.+..++|.|+|||||+|+.||+++++.+.. |.+.+...++.+|. ++||..
T Consensus 55 ~~v~~~~~~iiG~~~~~~-----~~i~~~~v~p~~~g~GiG~~Ll~~~~~~~~~-----l~v~~~~~a~~~Y~-k~Gf~~ 123 (147)
T PRK09831 55 VRVAVINAQPVGFITCIE-----HYIDMLFVDPEYTRRGVASALLKPLIKSESE-----LTVDASITAKPFFE-RYGFQT 123 (147)
T ss_pred eEEEEECCEEEEEEEehh-----ceeeeEEECHHHcCCCHHHHHHHHHHHHhhh-----eEeecchhhHHHHH-HCCCEE
Confidence 446678999999988732 4577899999999999999999999998776 45567778999999 699999
Q ss_pred ccHH
Q 001460 995 LEES 998 (1074)
Q Consensus 995 m~~~ 998 (1074)
+...
T Consensus 124 ~g~~ 127 (147)
T PRK09831 124 VKQQ 127 (147)
T ss_pred eecc
Confidence 8763
No 36
>PRK13688 hypothetical protein; Provisional
Probab=98.02 E-value=2.5e-05 Score=79.29 Aligned_cols=76 Identities=18% Similarity=0.222 Sum_probs=59.0
Q ss_pred EEeeCCeEEEEEEEEEe----------cCeeEEeeeeeeeccccccChhHHHHHHHHHHHhhcCceEEEEcchhhhHHHh
Q 001460 917 ILERGDEIISAASIRFH----------GTQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAIAELMHTW 986 (1074)
Q Consensus 917 VLe~~devVsaAsiRV~----------G~~~AElPlvAT~~~yRrQGmgR~Lv~aIE~~L~~LgVe~LvlpA~~ea~~~W 986 (1074)
++..++++|+++.+... ..+.++|--|||.++|||||+|+.||+.+++ .++. +.+.+...+..||
T Consensus 49 ~~~~~~~~VG~~~l~~~dg~~~~~~~~~~~~~~L~~l~V~p~~rgkGiG~~Ll~~a~~----~~~~-~~~~~~~~a~~FY 123 (156)
T PRK13688 49 GIYYGDSLVARMSLYKKGGVEEPYFEDTQDYLELWKLEVLPKYQNRGYGEMLVDFAKS----FQLP-IKTIARNKSKDFW 123 (156)
T ss_pred EEEECCEEEEEEEEEecCCcccccccCCCCeEEEEEEEECHHHcCCCHHHHHHHHHHH----hCCe-EEEEeccchHHHH
Confidence 34568999998887542 1366899999999999999999999987654 3443 3445667789999
Q ss_pred hhccCcEEccHH
Q 001460 987 TRVFGFTSLEES 998 (1074)
Q Consensus 987 t~kFGF~~m~~~ 998 (1074)
. ++||..+...
T Consensus 124 ~-k~GF~~~~~~ 134 (156)
T PRK13688 124 L-KLGFTPVEYK 134 (156)
T ss_pred H-hCCCEEeEEe
Confidence 9 7999988753
No 37
>TIGR03448 mycothiol_MshD mycothiol biosynthesis acetyltransferase. Members of this family are MshD, the acetyltransferase that catalyzes the final step of mycothiol biosynthesis in various members of the Actinomyctes, Mycothiol replaces glutathione in these species.
Probab=98.00 E-value=2.4e-05 Score=84.13 Aligned_cols=86 Identities=17% Similarity=0.245 Sum_probs=68.4
Q ss_pred CcceEEEEeeCCeEEEEEEEEEecC--eeEEeeeeeeeccccccChhHHHHHHHHHHHhhcCceEEEEcch---hhhHHH
Q 001460 911 SGFYTAILERGDEIISAASIRFHGT--QLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAI---AELMHT 985 (1074)
Q Consensus 911 ~GFYT~VLe~~devVsaAsiRV~G~--~~AElPlvAT~~~yRrQGmgR~Lv~aIE~~L~~LgVe~LvlpA~---~ea~~~ 985 (1074)
.++|.++...++++|+.+.+.+... ..+++-.++|.++|||||+|+.|+.++++.+...|+..+++... ..++.+
T Consensus 198 ~~~~~a~~~~~~~~vG~~~~~~~~~~~~~~~i~~~~V~p~~rg~GiG~~ll~~~~~~~~~~g~~~v~l~v~~~N~~a~~~ 277 (292)
T TIGR03448 198 AGLFLAFDDAPGELLGFHWTKVHPDEPALGEVYVVGVDPAAQGRGLGDALTLIGLHHLAARGLPAVMLYVEADNEAAVRT 277 (292)
T ss_pred CceEEEEECCCCcEEEEEEEEecCCCCceeEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEEeCCCHHHHHH
Confidence 4555443323689999887766543 46788889999999999999999999999999999998777654 468999
Q ss_pred hhhccCcEEccH
Q 001460 986 WTRVFGFTSLEE 997 (1074)
Q Consensus 986 Wt~kFGF~~m~~ 997 (1074)
|. ++||+....
T Consensus 278 y~-k~GF~~~~~ 288 (292)
T TIGR03448 278 YE-KLGFTVAEV 288 (292)
T ss_pred HH-HcCCEEccc
Confidence 99 699998654
No 38
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=97.96 E-value=4.6e-06 Score=104.53 Aligned_cols=59 Identities=37% Similarity=0.916 Sum_probs=50.2
Q ss_pred CccccccccccCCC-----CcEecCCCCCcCCCCCCCCcCCCCCCCCCCCcc--------ccccCCCCCCCC
Q 001460 715 DPNDDTCGICGDGG-----DLICCDGCPSTFHQSCLDIQMLPPGDWHCPNCT--------CKFCGLAGEDDA 773 (1074)
Q Consensus 715 d~ndd~C~VCgdGG-----dLLcCD~CprafH~~CL~p~~vP~g~W~Cp~C~--------C~~Cg~~~~d~~ 773 (1074)
...|..|.||.++. ..++||.|.-++|++|.+.+.+|+|.|.|..|. |.+|...++++.
T Consensus 216 ~~~D~~C~iC~~~~~~n~n~ivfCD~Cnl~VHq~Cygi~~ipeg~WlCr~Cl~s~~~~v~c~~cp~~~gAFk 287 (1051)
T KOG0955|consen 216 LEEDAVCCICLDGECQNSNVIVFCDGCNLAVHQECYGIPFIPEGQWLCRRCLQSPQRPVRCLLCPSKGGAFK 287 (1051)
T ss_pred cCCCccceeecccccCCCceEEEcCCCcchhhhhccCCCCCCCCcEeehhhccCcCcccceEeccCCCCcce
Confidence 34577999998764 489999999999999999999999999999996 888876665543
No 39
>TIGR02406 ectoine_EctA L-2,4-diaminobutyric acid acetyltransferase. This enzyme family is the EctA of ectoine biosynthesis. Ectoine is a compatible solute, analagous to trehalose, betaines, etc., found often in halotolerant organisms. EctA is L-2,4-diaminobutyric acid acetyltransferase, also called DABA acetyltransferase.
Probab=97.95 E-value=4.5e-05 Score=76.25 Aligned_cols=83 Identities=17% Similarity=0.112 Sum_probs=65.9
Q ss_pred ceEEEEe-eCCeEEEEEEEEE--ecCeeEEeeeeeeeccccccChhHHHHHHHHHHHhhcCceEEEEcc---hhhhHHHh
Q 001460 913 FYTAILE-RGDEIISAASIRF--HGTQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPA---IAELMHTW 986 (1074)
Q Consensus 913 FYT~VLe-~~devVsaAsiRV--~G~~~AElPlvAT~~~yRrQGmgR~Lv~aIE~~L~~LgVe~LvlpA---~~ea~~~W 986 (1074)
.+++|.+ .++++|+.+.+.. ...+.+.+-.||+.++|||||+|+.|+..+++.+...++.+|.+.. -..+..+|
T Consensus 39 ~~~~v~~~~~~~ivG~~~~~~~~~~~~~~~i~~l~V~p~~rg~GiG~~L~~~l~~~a~~~~~~~i~~~v~~~N~~a~~ly 118 (157)
T TIGR02406 39 DTSIVAESEGGEIVGFVSGYLRPDRPDVLFVWQVAVDPRARGKGLARRLLEALLERVACERVRHLETTITPDNQASRALF 118 (157)
T ss_pred CcEEEEEcCCCeEEEEEEEEecCCCCCeEEEEEEEEChHhccCcHHHHHHHHHHHHHHhCCCCEEEEEEcCCCHHHHHHH
Confidence 3456666 5779999886533 2335678889999999999999999999999999998888877654 45678899
Q ss_pred hhccCcEEcc
Q 001460 987 TRVFGFTSLE 996 (1074)
Q Consensus 987 t~kFGF~~m~ 996 (1074)
+ +|||+...
T Consensus 119 ~-k~G~~~~~ 127 (157)
T TIGR02406 119 K-ALARRRGV 127 (157)
T ss_pred H-HhCcccCC
Confidence 8 69997643
No 40
>KOG0954 consensus PHD finger protein [General function prediction only]
Probab=97.94 E-value=2.9e-06 Score=101.38 Aligned_cols=87 Identities=28% Similarity=0.658 Sum_probs=66.4
Q ss_pred CccccccccccCC-----CCcEecCCCCCcCCCCCCCCcCCCCCCCCCCCcc------ccccCCCCCCCCCCCCCCCccc
Q 001460 715 DPNDDTCGICGDG-----GDLICCDGCPSTFHQSCLDIQMLPPGDWHCPNCT------CKFCGLAGEDDAEGDDTTTSAL 783 (1074)
Q Consensus 715 d~ndd~C~VCgdG-----GdLLcCD~CprafH~~CL~p~~vP~g~W~Cp~C~------C~~Cg~~~~d~~eed~~s~~~L 783 (1074)
.+++..|-||..+ .+|++||.|....|+.|.++..+|++.|.|..|. |.+|...++........+.+..
T Consensus 268 ~dedviCDvCrspD~e~~neMVfCd~Cn~cVHqaCyGIle~p~gpWlCr~Calg~~ppCvLCPkkGGamK~~~sgT~wAH 347 (893)
T KOG0954|consen 268 YDEDVICDVCRSPDSEEANEMVFCDKCNICVHQACYGILEVPEGPWLCRTCALGIEPPCVLCPKKGGAMKPTKSGTKWAH 347 (893)
T ss_pred ccccceeceecCCCccccceeEEeccchhHHHHhhhceeecCCCCeeehhccccCCCCeeeccccCCcccccCCCCeeeE
Confidence 3477889999765 4699999999999999999999999999999997 9999888776543333344556
Q ss_pred ccCCcchhhhhhhccccc
Q 001460 784 LPCAMCEKKYHKLCMQEM 801 (1074)
Q Consensus 784 l~CdQCer~YHv~CL~~~ 801 (1074)
+.|...--+.-+.|...+
T Consensus 348 vsCALwIPEVsie~~ekm 365 (893)
T KOG0954|consen 348 VSCALWIPEVSIECPEKM 365 (893)
T ss_pred eeeeeccceeeccCHhhc
Confidence 666665555556665544
No 41
>cd04301 NAT_SF N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate. NAT (N-Acyltransferase) is a large superfamily of enzymes that mostly catalyze the transfer of an acyl group to a substrate and are implicated in a variety of functions, ranging from bacterial antibiotic resistance to circadian rhythms in mammals. Members include GCN5-related N-Acetyltransferases (GNAT) such as Aminoglycoside N-acetyltransferases, Histone N-acetyltransferase (HAT) enzymes, and Serotonin N-acetyltransferase, which catalyze the transfer of an acetyl group to a substrate. The kinetic mechanism of most GNATs involves the ordered formation of a ternary complex: the reaction begins with Acetyl Coenzyme A (AcCoA) binding, followed by binding of substrate, then direct transfer of the acetyl group from AcCoA to the substrate, followed by product and subsequent CoA release. Other family members include Arginine/ornithine N-succinyltransfera
Probab=97.92 E-value=5e-05 Score=60.00 Aligned_cols=61 Identities=23% Similarity=0.245 Sum_probs=54.9
Q ss_pred EEEeeCCeEEEEEEEEEec--CeeEEeeeeeeeccccccChhHHHHHHHHHHHhhcCceEEEE
Q 001460 916 AILERGDEIISAASIRFHG--TQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLII 976 (1074)
Q Consensus 916 ~VLe~~devVsaAsiRV~G--~~~AElPlvAT~~~yRrQGmgR~Lv~aIE~~L~~LgVe~Lvl 976 (1074)
+++..++++|+.+.+.... ...++|-.++|.++||++|+++.|+..+.+.+...|.+++++
T Consensus 2 ~~~~~~~~~ig~~~~~~~~~~~~~~~l~~~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~v~~ 64 (65)
T cd04301 2 LVAEDDGEIVGFASLSPDGSGGDTAYIGDLAVLPEYRGKGIGSALLEAAEEEARERGAKRLRL 64 (65)
T ss_pred EEEecCCEEEEEEEEEecCCCCccEEEEEEEECHHHcCcCHHHHHHHHHHHHHHHcCCcEEEe
Confidence 4566789999999998766 478999999999999999999999999999999999999886
No 42
>COG0456 RimI Acetyltransferases [General function prediction only]
Probab=97.88 E-value=5.3e-05 Score=74.58 Aligned_cols=76 Identities=14% Similarity=0.258 Sum_probs=63.5
Q ss_pred eEEEEEEEE-EecCe----eEEeeeeeeeccccccChhHHHHHHHHHHHhhcCc-eEEEEcchh---hhHHHhhhccCcE
Q 001460 923 EIISAASIR-FHGTQ----LAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKV-EKLIIPAIA---ELMHTWTRVFGFT 993 (1074)
Q Consensus 923 evVsaAsiR-V~G~~----~AElPlvAT~~~yRrQGmgR~Lv~aIE~~L~~LgV-e~LvlpA~~---ea~~~Wt~kFGF~ 993 (1074)
++++....+ +.|.. .++|-.|||.|+|||||+|+.|++++++.+...+. +.++|-.+. .|+.+|. ++||.
T Consensus 72 ~~~G~~~~~~~~~~~~~~~~~~i~~iaV~p~~r~~Gig~~Ll~~~~~~~~~~~~~~~~~L~V~~~N~~Ai~lY~-~~GF~ 150 (177)
T COG0456 72 KVVGFLLVRVVDGRPSADHEGHIYNLAVDPEYRGRGIGRALLDEALERLRERGLADKIVLEVRESNEAAIGLYR-KLGFE 150 (177)
T ss_pred ceeEEEEEEEecCCccccCccEEEEEEEChHhhcCCHHHHHHHHHHHHHHhcCCCceEEEEEecCChHHHHHHH-HcCCE
Confidence 488888775 44432 78999999999999999999999999999999986 788887775 4889999 69999
Q ss_pred EccHHH
Q 001460 994 SLEESL 999 (1074)
Q Consensus 994 ~m~~~~ 999 (1074)
.+....
T Consensus 151 ~~~~~~ 156 (177)
T COG0456 151 VVKIRK 156 (177)
T ss_pred EEeeeh
Confidence 987533
No 43
>TIGR03448 mycothiol_MshD mycothiol biosynthesis acetyltransferase. Members of this family are MshD, the acetyltransferase that catalyzes the final step of mycothiol biosynthesis in various members of the Actinomyctes, Mycothiol replaces glutathione in these species.
Probab=97.87 E-value=6.3e-05 Score=80.97 Aligned_cols=82 Identities=16% Similarity=0.058 Sum_probs=65.7
Q ss_pred ceEEEEeeCCeEEEEEEEEEecCeeEEeeeeeeeccccccChhHHHHHHHHHHHhhcCceEEEEcch-hhhHHHhhhccC
Q 001460 913 FYTAILERGDEIISAASIRFHGTQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAI-AELMHTWTRVFG 991 (1074)
Q Consensus 913 FYT~VLe~~devVsaAsiRV~G~~~AElPlvAT~~~yRrQGmgR~Lv~aIE~~L~~LgVe~LvlpA~-~ea~~~Wt~kFG 991 (1074)
.+.+|...+++||+.+.+.......+++--|+|.|+|||||+|+.||+.+++.+. +.-.|++... ..|..||. ++|
T Consensus 46 ~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~l~V~p~~rg~GiG~~Ll~~~~~~~~--~~~~~~~~~~n~~a~~fy~-~~G 122 (292)
T TIGR03448 46 TRHLVAVDSDPIVGYANLVPARGTDPAMAELVVHPAHRRRGIGRALIRALLAKGG--GRLRVWAHGDLPAARALAS-RLG 122 (292)
T ss_pred ceEEEEEECCEEEEEEEEEcCCCCcceEEEEEECHhhcCCCHHHHHHHHHHHhcc--CceEEEEcCCCHHHHHHHH-HCC
Confidence 3456667889999999988765555778889999999999999999999999865 3345566543 57899999 699
Q ss_pred cEEccH
Q 001460 992 FTSLEE 997 (1074)
Q Consensus 992 F~~m~~ 997 (1074)
|..+..
T Consensus 123 f~~~~~ 128 (292)
T TIGR03448 123 LVPTRE 128 (292)
T ss_pred CEEccE
Confidence 988765
No 44
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.86 E-value=4.9e-06 Score=91.02 Aligned_cols=75 Identities=25% Similarity=0.501 Sum_probs=57.3
Q ss_pred cCCeeeCCCCceeecceeeec---cCCccccCceeEeccCCcchhhhhHHhhhccccccccCCcccCCCCCCcccccccc
Q 001460 647 RDGIHCGCCSKILTVSKFEIH---AGSKLRQPFQNIYLDSGVSLLQCQIDAWNKLKESESIGFESVDVDGDDPNDDTCGI 723 (1074)
Q Consensus 647 ~~GI~C~CC~kvfS~SeFE~H---AG~k~r~Py~nI~L~~G~SLldCqI~aw~~q~~sEk~G~~~v~~d~dd~ndd~C~V 723 (1074)
...|+|.-|....||++.+.. ++.-...| |++.+| ..|.+
T Consensus 277 ~S~I~C~~C~~~~HP~Ci~M~~elv~~~KTY~---------W~C~~C----------------------------~lC~I 319 (381)
T KOG1512|consen 277 NSWIVCKPCATRPHPYCVAMIPELVGQYKTYF---------WKCSSC----------------------------ELCRI 319 (381)
T ss_pred ccceeecccccCCCCcchhcCHHHHhHHhhcc---------hhhccc----------------------------Hhhhc
Confidence 456999999999999987543 22211222 222233 47999
Q ss_pred ccCCC---CcEecCCCCCcCCCCCCCCcCCCCCCCCCC
Q 001460 724 CGDGG---DLICCDGCPSTFHQSCLDIQMLPPGDWHCP 758 (1074)
Q Consensus 724 CgdGG---dLLcCD~CprafH~~CL~p~~vP~g~W~Cp 758 (1074)
|+.+. ++++||.|++.||.+|+++..+|.|.|.|.
T Consensus 320 C~~P~~E~E~~FCD~CDRG~HT~CVGL~~lP~G~WICD 357 (381)
T KOG1512|consen 320 CLGPVIESEHLFCDVCDRGPHTLCVGLQDLPRGEWICD 357 (381)
T ss_pred cCCcccchheeccccccCCCCccccccccccCccchhh
Confidence 98764 699999999999999999999999999996
No 45
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=97.86 E-value=3.7e-06 Score=69.55 Aligned_cols=42 Identities=48% Similarity=1.270 Sum_probs=34.8
Q ss_pred ccccccC---CCCcEecCCCCCcCCCCCCCCcC----CCCCCCCCCCcc
Q 001460 720 TCGICGD---GGDLICCDGCPSTFHQSCLDIQM----LPPGDWHCPNCT 761 (1074)
Q Consensus 720 ~C~VCgd---GGdLLcCD~CprafH~~CL~p~~----vP~g~W~Cp~C~ 761 (1074)
+|.+|+. .++||.|+.|..+||..|++++. .+.+.|+|+.|.
T Consensus 1 ~C~vC~~~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~ 49 (51)
T PF00628_consen 1 YCPVCGQSDDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCR 49 (51)
T ss_dssp EBTTTTSSCTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHH
T ss_pred eCcCCCCcCCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCc
Confidence 4788886 56799999999999999999863 344589999885
No 46
>PF13420 Acetyltransf_4: Acetyltransferase (GNAT) domain; PDB: 3DR8_A 3DR6_A 2AE6_B 2JLM_C 2J8R_A 1YVO_B 2J8M_A 2J8N_A 2BL1_A 3IWG_A ....
Probab=97.85 E-value=0.00013 Score=70.78 Aligned_cols=76 Identities=22% Similarity=0.321 Sum_probs=62.4
Q ss_pred eCCeEEEEEEEEEecC--eeEEeeeeeeeccccccChhHHHHHHHHHHH-hhcCceEEEEcch---hhhHHHhhhccCcE
Q 001460 920 RGDEIISAASIRFHGT--QLAEMPFIGTRHIYRRQGMCRRLFCALESAL-CSLKVEKLIIPAI---AELMHTWTRVFGFT 993 (1074)
Q Consensus 920 ~~devVsaAsiRV~G~--~~AElPlvAT~~~yRrQGmgR~Lv~aIE~~L-~~LgVe~LvlpA~---~ea~~~Wt~kFGF~ 993 (1074)
.+|++||.+.++-... ..|++=++- .++||++|+|+.|+..|++.+ ..+|+++|.+... ..++.+|+ ++||+
T Consensus 58 ~~g~iiG~~~~~~~~~~~~~~~~~~~v-~~~~~~~gig~~l~~~l~~~af~~~~~~~i~~~v~~~N~~~i~~~~-~~GF~ 135 (155)
T PF13420_consen 58 EDGKIIGYVSLRDIDPYNHTAELSIYV-SPDYRGKGIGRKLLDELIEYAFKELGIHKIYLEVFSSNEKAINFYK-KLGFE 135 (155)
T ss_dssp CTTEEEEEEEEEESSSGTTEEEEEEEE-EGGGTTSSHHHHHHHHHHHHH-HHTT-CEEEEEEETT-HHHHHHHH-HTTEE
T ss_pred cCCcEEEEEEEEeeeccCCEEEEeeEE-ChhHCCCcHHHHHHHHHHHHhhhccCeEEEEEEEecCCHHHHHHHH-hCCCE
Confidence 5999999999985443 577777444 499999999999999999999 9999999986544 46889999 69999
Q ss_pred EccH
Q 001460 994 SLEE 997 (1074)
Q Consensus 994 ~m~~ 997 (1074)
....
T Consensus 136 ~~g~ 139 (155)
T PF13420_consen 136 EEGE 139 (155)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8753
No 47
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.
Probab=97.83 E-value=6.7e-05 Score=89.63 Aligned_cols=86 Identities=13% Similarity=0.116 Sum_probs=68.5
Q ss_pred CcceEEEEee--CCeEEEEEEEEEe------cCeeEEeeeeeeeccccccChhHHHHHHHHHHHhhcCceEEEEcch---
Q 001460 911 SGFYTAILER--GDEIISAASIRFH------GTQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAI--- 979 (1074)
Q Consensus 911 ~GFYT~VLe~--~devVsaAsiRV~------G~~~AElPlvAT~~~yRrQGmgR~Lv~aIE~~L~~LgVe~LvlpA~--- 979 (1074)
.+++.+|++. +++||+.+..-.+ +...++|--|+|.++|||||+|+.||.++++.++..|+.+++|...
T Consensus 121 ~~~~~~vA~~~~~g~IVG~~~~~~~~~~~~d~~~~~~i~~l~V~P~~Rg~GIG~~Ll~~l~e~a~~~G~~~i~L~V~~~N 200 (547)
T TIGR03103 121 RAITYLVAEDEASGAIIGTVMGVDHRKAFNDPEHGSSLWCLAVDPQAAHPGVGEALVRALAEHFQSRGCAYMDLSVMHDN 200 (547)
T ss_pred CCceEEEEEECCCCeEEEEEEEEeccccccCCCCCeEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEEcCCC
Confidence 4455566664 6899999875322 2234788889999999999999999999999999999999876543
Q ss_pred hhhHHHhhhccCcEEccH
Q 001460 980 AELMHTWTRVFGFTSLEE 997 (1074)
Q Consensus 980 ~ea~~~Wt~kFGF~~m~~ 997 (1074)
..|+.||. ++||..++.
T Consensus 201 ~~Ai~fY~-klGf~~~~~ 217 (547)
T TIGR03103 201 EQAIALYE-KLGFRRIPV 217 (547)
T ss_pred HHHHHHHH-HCCCEEeeE
Confidence 67899998 699987753
No 49
>KOG3139 consensus N-acetyltransferase [General function prediction only]
Probab=97.79 E-value=5.9e-05 Score=77.51 Aligned_cols=81 Identities=12% Similarity=0.217 Sum_probs=67.6
Q ss_pred EEEEEEEEEecC---eeEEeeeeeeeccccccChhHHHHHHHHHHHhhcCceEEEEcchh---hhHHHhhhccCcEEccH
Q 001460 924 IISAASIRFHGT---QLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAIA---ELMHTWTRVFGFTSLEE 997 (1074)
Q Consensus 924 vVsaAsiRV~G~---~~AElPlvAT~~~yRrQGmgR~Lv~aIE~~L~~LgVe~LvlpA~~---ea~~~Wt~kFGF~~m~~ 997 (1074)
.|+|+.....-. .-++|-.+|+.++|||||+|.+|+..+.+.++..|+..+||..-. .|+.+|. +|||..+-.
T Consensus 68 ~VGai~ck~~~~r~~~rgyi~mLaV~~e~Rg~GIg~aLvr~aId~m~~~g~~eVvLeTe~~n~~A~~LY~-sLGF~r~~r 146 (165)
T KOG3139|consen 68 TVGAIVCKLDTHRNTLRGYIAMLAVDSEYRGQGIGKALVRKAIDAMRSRGYSEVVLETEVTNLSALRLYE-SLGFKRDKR 146 (165)
T ss_pred eEEEEEEeccccCCcceEEEEEEEechhhccccHHHHHHHHHHHHHHHCCCcEEEEeccccchHHHHHHH-hcCceEecc
Confidence 477666654333 358999999999999999999999999999999999999998875 6889999 599999877
Q ss_pred HHHHhhhc
Q 001460 998 SLKQEMRS 1005 (1074)
Q Consensus 998 ~~k~~~~~ 1005 (1074)
..+-.|..
T Consensus 147 ~~~YYlng 154 (165)
T KOG3139|consen 147 LFRYYLNG 154 (165)
T ss_pred eeEEEECC
Confidence 66666654
No 50
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.78 E-value=6.8e-06 Score=98.60 Aligned_cols=44 Identities=36% Similarity=0.966 Sum_probs=38.0
Q ss_pred ccccccccCCC---CcEecCCCCCc-CCCCCCCCcC--CCCCCCCCCCcc
Q 001460 718 DDTCGICGDGG---DLICCDGCPST-FHQSCLDIQM--LPPGDWHCPNCT 761 (1074)
Q Consensus 718 dd~C~VCgdGG---dLLcCD~Cpra-fH~~CL~p~~--vP~g~W~Cp~C~ 761 (1074)
..-|.+|.... -||+||.|..+ ||.+||+|+. +|.++|||+.|.
T Consensus 215 ~~~C~IC~~~DpEdVLLLCDsCN~~~YH~YCLDPdl~eiP~~eWYC~NC~ 264 (1134)
T KOG0825|consen 215 EVKCDICTVHDPEDVLLLCDSCNKVYYHVYCLDPDLSESPVNEWYCTNCS 264 (1134)
T ss_pred cccceeeccCChHHhheeecccccceeeccccCcccccccccceecCcch
Confidence 34699998544 39999999999 9999999975 899999999996
No 51
>PRK01346 hypothetical protein; Provisional
Probab=97.76 E-value=9.4e-05 Score=84.12 Aligned_cols=81 Identities=19% Similarity=0.138 Sum_probs=68.2
Q ss_pred EEEEeeCCeEEEEEEEEEe------cC--eeEEeeeeeeeccccccChhHHHHHHHHHHHhhcCceEEEEcchhhhHHHh
Q 001460 915 TAILERGDEIISAASIRFH------GT--QLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAIAELMHTW 986 (1074)
Q Consensus 915 T~VLe~~devVsaAsiRV~------G~--~~AElPlvAT~~~yRrQGmgR~Lv~aIE~~L~~LgVe~LvlpA~~ea~~~W 986 (1074)
++++..+++|||.+.+..+ |. ..+.|-.|||.|+|||||+|+.||..+++.++..|+..++|-+.. ..+|
T Consensus 49 ~~va~~~~~lvg~~~~~~~~~~~~~~~~~~~~~i~~v~V~P~~RgrGig~~Ll~~~l~~a~~~g~~~~~L~~~~--~~~Y 126 (411)
T PRK01346 49 TLGAFDGDEVVGTAGAFDLRLTVPGGAVLPAAGVTAVTVAPTHRRRGLLTALMREQLRRIRERGEPVAALTASE--GGIY 126 (411)
T ss_pred eEEEEECCEEEEEEEEeccccccCCCCccceeEEEEEEEChhhcCCCHHHHHHHHHHHHHHHCCCcEEEEECCc--hhhH
Confidence 4667789999999887532 32 578899999999999999999999999999999999988887665 3688
Q ss_pred hhccCcEEccHH
Q 001460 987 TRVFGFTSLEES 998 (1074)
Q Consensus 987 t~kFGF~~m~~~ 998 (1074)
. +|||......
T Consensus 127 ~-r~Gf~~~~~~ 137 (411)
T PRK01346 127 G-RFGYGPATYS 137 (411)
T ss_pred h-hCCCeeccce
Confidence 8 6999988763
No 52
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]
Probab=97.71 E-value=1.3e-05 Score=88.15 Aligned_cols=42 Identities=38% Similarity=1.009 Sum_probs=37.6
Q ss_pred cccccccCCCCcEecCC--CC-CcCCCCCCCCcCCCCCCCCCCCcc
Q 001460 719 DTCGICGDGGDLICCDG--CP-STFHQSCLDIQMLPPGDWHCPNCT 761 (1074)
Q Consensus 719 d~C~VCgdGGdLLcCD~--Cp-rafH~~CL~p~~vP~g~W~Cp~C~ 761 (1074)
.+|. |...|+|+-||. |+ .+||+.|+++...|.|.|||+.|.
T Consensus 222 C~Cn-qvsyg~Mi~CDn~~C~~eWFH~~CVGL~~~PkgkWyC~~C~ 266 (274)
T KOG1973|consen 222 CICN-QVSYGKMIGCDNPGCPIEWFHFTCVGLKTKPKGKWYCPRCK 266 (274)
T ss_pred EEec-ccccccccccCCCCCCcceEEEeccccccCCCCcccchhhh
Confidence 3555 667899999998 99 999999999999999999999886
No 53
>KOG3396 consensus Glucosamine-phosphate N-acetyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=97.69 E-value=0.00011 Score=73.92 Aligned_cols=84 Identities=18% Similarity=0.322 Sum_probs=73.1
Q ss_pred ceEEEEe--eCCeEEEEEEEEE-----ecC-eeEEeeeeeeeccccccChhHHHHHHHHHHHhhcCceEEEEcchhhhHH
Q 001460 913 FYTAILE--RGDEIISAASIRF-----HGT-QLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAIAELMH 984 (1074)
Q Consensus 913 FYT~VLe--~~devVsaAsiRV-----~G~-~~AElPlvAT~~~yRrQGmgR~Lv~aIE~~L~~LgVe~LvlpA~~ea~~ 984 (1074)
+|.+|+| ..++||++|+|-| ||- .-..|-=|++.++||||++|+.|+..+-.+..+||+=.+.|.-.++.++
T Consensus 53 Y~i~Vied~~s~~vigtatL~IE~KfIh~~g~rGhiEDVVV~~~~rgk~LGkllv~~Lv~l~k~lgcYKi~LdC~~~nv~ 132 (150)
T KOG3396|consen 53 YYIVVIEDKESEKVIGTATLFIERKFIHGCGSRGHIEDVVVDSEYRGKQLGKLLVETLVDLAKSLGCYKIILDCDPKNVK 132 (150)
T ss_pred EEEEEEEeCCcCeEEEEEEEEEehhhhhcccccCceeEEEeChhhhhhHHhHHHHHHHHHHHHhcCcEEEEEecchhhhh
Confidence 7888888 5579999999965 333 3345667899999999999999999999999999999999999999999
Q ss_pred HhhhccCcEEccH
Q 001460 985 TWTRVFGFTSLEE 997 (1074)
Q Consensus 985 ~Wt~kFGF~~m~~ 997 (1074)
||. +|||+.-..
T Consensus 133 FYe-KcG~s~~~~ 144 (150)
T KOG3396|consen 133 FYE-KCGYSNAGN 144 (150)
T ss_pred HHH-HcCccccch
Confidence 999 799997653
No 54
>PRK10514 putative acetyltransferase; Provisional
Probab=97.68 E-value=0.00016 Score=69.54 Aligned_cols=75 Identities=15% Similarity=0.086 Sum_probs=58.0
Q ss_pred EEeeCCeEEEEEEEEEecCeeEEeeeeeeeccccccChhHHHHHHHHHHHhhcCceEEEEcchhhhHHHhhhccCcEEcc
Q 001460 917 ILERGDEIISAASIRFHGTQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAIAELMHTWTRVFGFTSLE 996 (1074)
Q Consensus 917 VLe~~devVsaAsiRV~G~~~AElPlvAT~~~yRrQGmgR~Lv~aIE~~L~~LgVe~LvlpA~~ea~~~Wt~kFGF~~m~ 996 (1074)
+++.++++||.+.+. . .++-.+++.++|||||+|+.|++.+++.+.. +...+.+.-..+..+|. |+||+...
T Consensus 54 ~~~~~~~~iG~~~~~--~---~~~~~~~v~p~~rgkGig~~Ll~~~~~~~~~--i~~~v~~~N~~a~~~ye-k~Gf~~~~ 125 (145)
T PRK10514 54 AVDERDQPVGFMLLS--G---GHMEALFVDPDVRGCGVGRMLVEHALSLHPE--LTTDVNEQNEQAVGFYK-KMGFKVTG 125 (145)
T ss_pred EEecCCcEEEEEEEe--c---CcEeEEEECHHhccCCHHHHHHHHHHHhccc--cEEEeecCCHHHHHHHH-HCCCEEec
Confidence 445688999988764 2 3445799999999999999999999997543 44445556678999999 79999976
Q ss_pred HHH
Q 001460 997 ESL 999 (1074)
Q Consensus 997 ~~~ 999 (1074)
...
T Consensus 126 ~~~ 128 (145)
T PRK10514 126 RSE 128 (145)
T ss_pred ccc
Confidence 533
No 55
>KOG4299 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.65 E-value=3.4e-05 Score=91.76 Aligned_cols=44 Identities=41% Similarity=1.151 Sum_probs=37.8
Q ss_pred ccccccccCCCCcEecCCCCCcCCCCCCCCcC---CCCCCCCCCCcc
Q 001460 718 DDTCGICGDGGDLICCDGCPSTFHQSCLDIQM---LPPGDWHCPNCT 761 (1074)
Q Consensus 718 dd~C~VCgdGGdLLcCD~CprafH~~CL~p~~---vP~g~W~Cp~C~ 761 (1074)
-..|.+|..+|+++||+.|+.+||+.|.+++. .+.+.|-|..|.
T Consensus 47 ~ts~~~~~~~gn~~~~~~~~~s~h~~~~~~~~sp~~~~~~~~~~~~~ 93 (613)
T KOG4299|consen 47 ATSCGICKSGGNLLCCDHCPASFHLECDKPPLSPDLKGSEINCSRCP 93 (613)
T ss_pred hhhcchhhhcCCccccccCccccchhccCcccCcccccccccccCCC
Confidence 46799999999999999999999999999753 444678888885
No 56
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=97.61 E-value=0.00019 Score=79.89 Aligned_cols=82 Identities=11% Similarity=0.007 Sum_probs=69.1
Q ss_pred cceEEEEee---CCeEEEEEEEEEecCeeEEeeeeeeeccccccChhHHHHHHHHHHHhhcCceEEEEcch-----hhhH
Q 001460 912 GFYTAILER---GDEIISAASIRFHGTQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAI-----AELM 983 (1074)
Q Consensus 912 GFYT~VLe~---~devVsaAsiRV~G~~~AElPlvAT~~~yRrQGmgR~Lv~aIE~~L~~LgVe~LvlpA~-----~ea~ 983 (1074)
..|++.+.. ++.+||++.++..+ ..++|-.+++++.|||+|+|+.||.++++.++..|+..|++... ..|.
T Consensus 230 ~~~~~~~~d~~gd~givG~~~~~~~~-~~~~I~~l~vs~r~~grGig~~Ll~~l~~~a~~~G~~~i~l~v~~~~~N~~A~ 308 (320)
T TIGR01686 230 EIVTVSMSDRFGDSGIIGIFVFEKKE-GNLFIDDLCMSCRALGRGVETRMLRWLFEQALDLGNHNARLYYRRTERNMPFL 308 (320)
T ss_pred CEEEEEEEecCCCCceEEEEEEEecC-CcEEEEEEEEcHhHhcCcHHHHHHHHHHHHHHHcCCCeEEEEEeeCCCchHHH
Confidence 355666543 67899999987654 56899999999999999999999999999999999999988653 4689
Q ss_pred HHhhhccCcEEc
Q 001460 984 HTWTRVFGFTSL 995 (1074)
Q Consensus 984 ~~Wt~kFGF~~m 995 (1074)
.||. ++||...
T Consensus 309 ~fY~-~~GF~~~ 319 (320)
T TIGR01686 309 SFYE-QIGFEDE 319 (320)
T ss_pred HHHH-HcCCccC
Confidence 9999 6999853
No 57
>PRK10562 putative acetyltransferase; Provisional
Probab=97.60 E-value=0.00023 Score=69.11 Aligned_cols=76 Identities=12% Similarity=0.125 Sum_probs=58.7
Q ss_pred EEEEeeCCeEEEEEEEEEecCeeEEeeeeeeeccccccChhHHHHHHHHHHHhhcCceEEEEcchhhhHHHhhhccCcEE
Q 001460 915 TAILERGDEIISAASIRFHGTQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAIAELMHTWTRVFGFTS 994 (1074)
Q Consensus 915 T~VLe~~devVsaAsiRV~G~~~AElPlvAT~~~yRrQGmgR~Lv~aIE~~L~~LgVe~LvlpA~~ea~~~Wt~kFGF~~ 994 (1074)
.+|+..++++|+.+.+... ..+-.+++.++|||||+|+.||+.+++.+..+.+ .+...-..+..+|. ++||+.
T Consensus 50 ~~v~~~~~~~iG~~~~~~~----~~i~~~~v~~~~rg~G~g~~ll~~~~~~~~~~~~--~v~~~N~~s~~~y~-k~Gf~~ 122 (145)
T PRK10562 50 TWVWEEDGKLLGFVSVLEG----RFVGALFVAPKAVRRGIGKALMQHVQQRYPHLSL--EVYQKNQRAVNFYH-AQGFRI 122 (145)
T ss_pred EEEEEECCEEEEEEEEeec----cEEEEEEECHHHcCCCHHHHHHHHHHhhCCeEEE--EEEcCChHHHHHHH-HCCCEE
Confidence 3455677899999887422 4567799999999999999999999997654332 23345567899999 699999
Q ss_pred ccH
Q 001460 995 LEE 997 (1074)
Q Consensus 995 m~~ 997 (1074)
+..
T Consensus 123 ~~~ 125 (145)
T PRK10562 123 VDS 125 (145)
T ss_pred ccc
Confidence 875
No 58
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=97.59 E-value=1.7e-05 Score=96.45 Aligned_cols=50 Identities=48% Similarity=1.268 Sum_probs=43.1
Q ss_pred CCccccccccccCCCCcEecCCCCCcCCCCCCCCcC--CCCCCCCCCCcccc
Q 001460 714 DDPNDDTCGICGDGGDLICCDGCPSTFHQSCLDIQM--LPPGDWHCPNCTCK 763 (1074)
Q Consensus 714 dd~ndd~C~VCgdGGdLLcCD~CprafH~~CL~p~~--vP~g~W~Cp~C~C~ 763 (1074)
++.+...|.+|+++|++||||.|+.+||.+|++++. .|.++|.|+.|.|.
T Consensus 43 ~~~~~e~c~ic~~~g~~l~c~tC~~s~h~~cl~~pl~~~p~~~~~c~Rc~~p 94 (696)
T KOG0383|consen 43 DDAEQEACRICADGGELLWCDTCPASFHASCLGPPLTPQPNGEFICPRCFCP 94 (696)
T ss_pred chhhhhhhhhhcCCCcEEEeccccHHHHHHccCCCCCcCCccceeeeeeccC
Confidence 355678999999999999999999999999999864 56688999988643
No 59
>PRK15130 spermidine N1-acetyltransferase; Provisional
Probab=97.57 E-value=0.00042 Score=69.87 Aligned_cols=82 Identities=18% Similarity=0.148 Sum_probs=66.5
Q ss_pred eEEEEeeCCeEEEEEEEEEec--CeeEEeeeeeeeccccccChhHHHHHHHHHHHh-hcCceEEEEcch---hhhHHHhh
Q 001460 914 YTAILERGDEIISAASIRFHG--TQLAEMPFIGTRHIYRRQGMCRRLFCALESALC-SLKVEKLIIPAI---AELMHTWT 987 (1074)
Q Consensus 914 YT~VLe~~devVsaAsiRV~G--~~~AElPlvAT~~~yRrQGmgR~Lv~aIE~~L~-~LgVe~LvlpA~---~ea~~~Wt 987 (1074)
+.++++.++++||.+.+.... ...+++- +++.++|||+|+|+.|+.++.+.+. .+|+.+|++-.. ..++.+|.
T Consensus 58 ~~~~i~~~g~~iG~~~~~~~~~~~~~~~~~-~~v~~~~~g~G~g~~l~~~l~~~~~~~~~~~rv~~~v~~~N~~s~~~ye 136 (186)
T PRK15130 58 RRFVVECDGEKAGLVELVEINHVHRRAEFQ-IIISPEYQGKGLATRAAKLAMDYGFTVLNLYKLYLIVDKENEKAIHIYR 136 (186)
T ss_pred cEEEEEECCEEEEEEEEEeecCCCCeEEEE-EEECHHHcCCCHHHHHHHHHHHHHhhcCCceEEEEEEccCCHHHHHHHH
Confidence 455667899999999886543 2457774 8999999999999999999998775 699999988654 46889999
Q ss_pred hccCcEEccH
Q 001460 988 RVFGFTSLEE 997 (1074)
Q Consensus 988 ~kFGF~~m~~ 997 (1074)
++||+....
T Consensus 137 -k~GF~~~~~ 145 (186)
T PRK15130 137 -KLGFEVEGE 145 (186)
T ss_pred -HCCCEEEEE
Confidence 699998764
No 60
>PF08445 FR47: FR47-like protein; InterPro: IPR013653 Proteins in this entry have a conserved region similar to the C-terminal region of the Drosophila melanogaster (Fruit fly) hypothetical protein FR47 (Q9VR51 from SWISSPROT). This protein has been found to consist of two N-acyltransferase-like domains swapped with the C-terminal strands. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups; PDB: 1SQH_A 3EC4_B.
Probab=97.53 E-value=0.0004 Score=63.85 Aligned_cols=74 Identities=20% Similarity=0.260 Sum_probs=56.0
Q ss_pred CeEEEEEEEEEecCeeEEeeeeeeeccccccChhHHHHHHHHHHHhhcCceEEEEc-c-hhhhHHHhhhccCcEEccH
Q 001460 922 DEIISAASIRFHGTQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIP-A-IAELMHTWTRVFGFTSLEE 997 (1074)
Q Consensus 922 devVsaAsiRV~G~~~AElPlvAT~~~yRrQGmgR~Lv~aIE~~L~~LgVe~Lvlp-A-~~ea~~~Wt~kFGF~~m~~ 997 (1074)
++.++.++-.+.... ++|-.|.|.|+|||+|+|+.|+.+|.+.+..-|..-++.- + -..+..+++ ++||..+..
T Consensus 7 ~~~~~l~~~~~~~~~-g~i~~v~t~p~~RrrGlg~~lv~~l~~~~~~~g~~~~l~v~~~N~~s~~ly~-klGf~~~~~ 82 (86)
T PF08445_consen 7 GELVALVAWIIRSDD-GEIGGVYTLPEHRRRGLGSALVAALARELLERGKTPFLYVDADNEASIRLYE-KLGFREIEE 82 (86)
T ss_dssp TCCEEEEEEEEESCT-CCEEEEEE-GGGTTSSHHHHHHHHHHHHHHHTTSEEEEEEETT-HHHHHHHH-HCT-EEEEE
T ss_pred CCccceeeEeeeCCC-cEEEEEEECHHHcCCCHHHHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHH-HcCCEEEEE
Confidence 355666665555544 9999999999999999999999999999988887764432 2 346789999 699998753
No 61
>PHA01807 hypothetical protein
Probab=97.52 E-value=0.00025 Score=72.10 Aligned_cols=76 Identities=12% Similarity=0.119 Sum_probs=60.1
Q ss_pred ceEEEEeeCCeEEEEEEEEEecC----eeEEeeeeeeeccccccChhHHHHHHHHHHHhhcCceEEEEcchhh---hHHH
Q 001460 913 FYTAILERGDEIISAASIRFHGT----QLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAIAE---LMHT 985 (1074)
Q Consensus 913 FYT~VLe~~devVsaAsiRV~G~----~~AElPlvAT~~~yRrQGmgR~Lv~aIE~~L~~LgVe~LvlpA~~e---a~~~ 985 (1074)
.+.+|++.++++|+.+++..... .+.+|--|.|.|+|||+|+|+.||+++++.++..|+..|++-...+ |+.+
T Consensus 53 ~~~lva~~dg~lvG~~~l~~~~~~~~~~i~~l~~lYV~pe~RG~GiG~~Ll~~~~~~Ar~~G~~~l~l~v~~~n~~a~~~ 132 (153)
T PHA01807 53 RTELLVFRDGKLAGIAVLVFEDDPHVGPCLGVQWQYVLPEYRNAGVAREFLRELIRLAGEGNLPLIAFSHREGEGRYTIH 132 (153)
T ss_pred ceEEEEEECCEEEEEEEEEcCCCcceeeeccceeEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEecCCcHHHHHH
Confidence 34466778999999999864432 2233334689999999999999999999999999999998877654 6678
Q ss_pred hhh
Q 001460 986 WTR 988 (1074)
Q Consensus 986 Wt~ 988 (1074)
|..
T Consensus 133 y~~ 135 (153)
T PHA01807 133 YRR 135 (153)
T ss_pred HHh
Confidence 876
No 62
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=97.47 E-value=7.4e-05 Score=87.15 Aligned_cols=99 Identities=20% Similarity=0.421 Sum_probs=68.2
Q ss_pred cccccccC-----CCCcEecCCCCCcCCCCCCCCcCCCCCCCCCCCcc--------------------------------
Q 001460 719 DTCGICGD-----GGDLICCDGCPSTFHQSCLDIQMLPPGDWHCPNCT-------------------------------- 761 (1074)
Q Consensus 719 d~C~VCgd-----GGdLLcCD~CprafH~~CL~p~~vP~g~W~Cp~C~-------------------------------- 761 (1074)
..|.+|.. +.++..|+.|.++||+.|..+.....+.|.|..|.
T Consensus 84 ~~~nv~~s~~~~p~~e~~~~~r~~~~~~q~~~i~~~~~~~~~~~~~c~~~~~~~~g~a~K~g~~a~~~l~y~~~~l~wD~ 163 (464)
T KOG4323|consen 84 LNPNVLTSETVLPENEKVICGRCKSGYHQGCNIPRFPSLDIGESTECVFPIFSQEGGALKKGRLARPSLPYPEASLDWDS 163 (464)
T ss_pred cCCcccccccccCchhhhhhhhhccCcccccCccCcCcCCccccccccccccccccccccccccccccccCcccccccCc
Confidence 45677764 34588999999999999997765556778888765
Q ss_pred -------ccccCCCCCCCCCCCCCCCcccccCCcchhhhhhhccccccccccCCCCCccceeCCcchhhHH
Q 001460 762 -------CKFCGLAGEDDAEGDDTTTSALLPCAMCEKKYHKLCMQEMDALSDNLTGLVTSFCGRKCQELSE 825 (1074)
Q Consensus 762 -------C~~Cg~~~~d~~eed~~s~~~Ll~CdQCer~YHv~CL~~~d~~p~~~~p~~~WFCs~~CkeI~e 825 (1074)
|.+|+.... ...+.|++|+.|..+||..|..+.....+...+...|||. .|..-.+
T Consensus 164 ~~~~n~qc~vC~~g~~-------~~~NrmlqC~~C~~~fHq~Chqp~i~~~l~~D~~~~w~C~-~C~~~~~ 226 (464)
T KOG4323|consen 164 GHKVNLQCSVCYCGGP-------GAGNRMLQCDKCRQWYHQACHQPLIKDELAGDPFYEWFCD-VCNRGPK 226 (464)
T ss_pred cccccceeeeeecCCc-------CccceeeeecccccHHHHHhccCCCCHhhccCccceEeeh-hhccchh
Confidence 333432221 1224799999999999999988754333334467889996 5554333
No 63
>TIGR03585 PseH pseudaminic acid biosynthesis N-acetyl transferase. Sequences in this family are members of the pfam00583 (GNAT) superfamily of acetyltransferases and are proposed to perform a N-acetylation step in the process of pseudaminic acid biosynthesis in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci. Significantly, many genomes containing other components of this pathway lack this gene, indicating that some other N-acetyl transferases may be incolved and/or the step is optional, resulting in a non-acetylated pseudaminic acid variant sugar.
Probab=97.42 E-value=0.0011 Score=64.28 Aligned_cols=79 Identities=16% Similarity=0.081 Sum_probs=64.1
Q ss_pred EEEeeCCeEEEEEEEEEec--CeeEEeeeeeeeccccccChhHHHHHHHHHHHh-hcCceEEEEc---chhhhHHHhhhc
Q 001460 916 AILERGDEIISAASIRFHG--TQLAEMPFIGTRHIYRRQGMCRRLFCALESALC-SLKVEKLIIP---AIAELMHTWTRV 989 (1074)
Q Consensus 916 ~VLe~~devVsaAsiRV~G--~~~AElPlvAT~~~yRrQGmgR~Lv~aIE~~L~-~LgVe~Lvlp---A~~ea~~~Wt~k 989 (1074)
+++..++++|+.+.+.... ...+++-++ +.+.+| +|+|+.++.++++.+. .+++.+|++. .-..++.++. +
T Consensus 54 ~~~~~~g~~vG~~~~~~~~~~~~~~~~g~~-~~~~~~-~G~g~~~~~~~~~~a~~~~~~~~i~~~v~~~N~~s~~~y~-k 130 (156)
T TIGR03585 54 WIVCQESRPIGVISFTDINLVHKSAFWGIY-ANPFCK-PGVGSVLEEAALEYAFEHLGLHKLSLEVLEFNNKALKLYE-K 130 (156)
T ss_pred EEEEECCEEEEEEEEEecChhhCeEEEEEE-eChhhh-cCchHHHHHHHHHHHHhhCCeeEEEEEEeccCHHHHHHHH-H
Confidence 4456789999999997655 356777655 889999 9999999999999976 5899999865 4456888999 6
Q ss_pred cCcEEccH
Q 001460 990 FGFTSLEE 997 (1074)
Q Consensus 990 FGF~~m~~ 997 (1074)
+||+.+..
T Consensus 131 ~Gf~~~g~ 138 (156)
T TIGR03585 131 FGFEREGV 138 (156)
T ss_pred cCCeEeee
Confidence 99998774
No 64
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=97.40 E-value=9.2e-05 Score=76.46 Aligned_cols=82 Identities=29% Similarity=0.744 Sum_probs=57.3
Q ss_pred ccccccC------CCCcEecCCCCCcCCCCCCCCcC--------CCCCC--CCCCCcc---------------ccccCCC
Q 001460 720 TCGICGD------GGDLICCDGCPSTFHQSCLDIQM--------LPPGD--WHCPNCT---------------CKFCGLA 768 (1074)
Q Consensus 720 ~C~VCgd------GGdLLcCD~CprafH~~CL~p~~--------vP~g~--W~Cp~C~---------------C~~Cg~~ 768 (1074)
+|.+|+. -|.||+|-+|..+||..||++-. |-.+. .+|.+|. |..|...
T Consensus 1 ~C~~C~~~g~~~~kG~Lv~CQGCs~sYHk~CLG~Rs~ReHlVTKVg~d~FVLQCr~Cig~~~kKD~~aP~~~~C~~C~~~ 80 (175)
T PF15446_consen 1 TCDTCGYEGDDRNKGPLVYCQGCSSSYHKACLGPRSQREHLVTKVGDDDFVLQCRRCIGIAHKKDPRAPHHGMCQQCKKP 80 (175)
T ss_pred CcccccCCCCCccCCCeEEcCccChHHHhhhcCCccccceeeEEEcCCceEEechhhcChhhcccCCCCCCCcccccCCC
Confidence 4778853 24599999999999999999732 23333 5788886 8888765
Q ss_pred CCCCC-------------------CCCCC----------CCcccccCCcchhhhhhhccccc
Q 001460 769 GEDDA-------------------EGDDT----------TTSALLPCAMCEKKYHKLCMQEM 801 (1074)
Q Consensus 769 ~~d~~-------------------eed~~----------s~~~Ll~CdQCer~YHv~CL~~~ 801 (1074)
+.... ..|.. ..+.|+.|..|.++||...|++.
T Consensus 81 G~~c~pfr~r~T~kQEe~~ReeNgG~DPit~Vd~~lvnN~~nVLFRC~~C~RawH~~HLP~~ 142 (175)
T PF15446_consen 81 GPSCKPFRPRKTPKQEEKLREENGGVDPITPVDPELVNNPDNVLFRCTSCHRAWHFEHLPPP 142 (175)
T ss_pred CCCCcccCCCCCcHHHHHHHHHcCCCCCCccCCHHHccChhheEEecCCccceeehhhCCCC
Confidence 43211 01111 12468999999999999999864
No 65
>COG3393 Predicted acetyltransferase [General function prediction only]
Probab=97.34 E-value=0.00062 Score=74.84 Aligned_cols=81 Identities=21% Similarity=0.276 Sum_probs=67.0
Q ss_pred EEEEeeCCeEEEEEEEEEecCeeEEeeeeeeeccccccChhHHHHHHHHHHH-hhcCceEEEEcch-hhhHHHhhhccCc
Q 001460 915 TAILERGDEIISAASIRFHGTQLAEMPFIGTRHIYRRQGMCRRLFCALESAL-CSLKVEKLIIPAI-AELMHTWTRVFGF 992 (1074)
Q Consensus 915 T~VLe~~devVsaAsiRV~G~~~AElPlvAT~~~yRrQGmgR~Lv~aIE~~L-~~LgVe~LvlpA~-~ea~~~Wt~kFGF 992 (1074)
+..++.+|+||+.|...-++..+|+|-.|.|.|+|||+||..+||.++-..| .+=....|++.++ +.|-.+|. +.||
T Consensus 179 ~~f~~~d~~iVa~A~t~a~~~~~~~I~gV~T~peyR~kGyAt~lva~L~~~lL~eGk~~~L~~~~~N~~A~~iY~-riGF 257 (268)
T COG3393 179 TYFLEGDGKIVAKAETAAENPAYAQINGVYTHPEYRGKGYATALVATLAAKLLAEGKIPCLFVNSDNPVARRIYQ-RIGF 257 (268)
T ss_pred EEEEccCCcEEEeeeccccCCcceEEEEEEcCHHHccccHHHHHHHHHHHHHHhCCCeeEEEEecCCHHHHHHHH-HhCC
Confidence 4455667799999999999999999999999999999999999999986555 4445566777655 45778898 6999
Q ss_pred EEcc
Q 001460 993 TSLE 996 (1074)
Q Consensus 993 ~~m~ 996 (1074)
..+.
T Consensus 258 ~~~g 261 (268)
T COG3393 258 REIG 261 (268)
T ss_pred eecc
Confidence 9865
No 66
>PF13523 Acetyltransf_8: Acetyltransferase (GNAT) domain; PDB: 2VQY_A 2BUE_A 1V0C_A 1YK3_D 2PR8_A 2QIR_A 2PRB_A 2QML_A 2PC1_A.
Probab=97.32 E-value=0.0017 Score=63.34 Aligned_cols=87 Identities=18% Similarity=0.222 Sum_probs=68.2
Q ss_pred cCcceEEEEeeCCeEEEEEEEEE------ecCeeEEeeeeeeeccccccChhHHHHHHHHHHHhhc-CceEEEEcchh--
Q 001460 910 YSGFYTAILERGDEIISAASIRF------HGTQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSL-KVEKLIIPAIA-- 980 (1074)
Q Consensus 910 F~GFYT~VLe~~devVsaAsiRV------~G~~~AElPlvAT~~~yRrQGmgR~Lv~aIE~~L~~L-gVe~LvlpA~~-- 980 (1074)
-.+++.+|+..+|++|+.+.+.- .....+.+-.+++.++|||||+|+.++.++.+.+..- ++++|++...+
T Consensus 45 ~~~~~~~v~~~dg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~G~g~~~~~~~~~~~~~~~~~~~i~~~~~~~N 124 (152)
T PF13523_consen 45 DPGHHPYVAEDDGEPIGYFEIYWPDEDYDADDGDRGIHRLIVDPEYRGQGLGKAMLRALIEFLFEDPGVDRIVLDPHEDN 124 (152)
T ss_dssp TTTEEEEEEEETTEEEEEEEEEEGGGSS---TTEEEEEEEESTGGGTTSSHHHHHHHHHHHHHHTSTT--EEEEEEBTT-
T ss_pred cCCceEEEEEECCEEEEEEEEecccccccCCCCEEEEeeeeechhhcCCCHHHHHHHHHHHHHHhCCCCCEEEEecCcCC
Confidence 46778999999999999887742 1235677888999999999999999999988887765 89999998876
Q ss_pred -hhHHHhhhccCcEEccH
Q 001460 981 -ELMHTWTRVFGFTSLEE 997 (1074)
Q Consensus 981 -ea~~~Wt~kFGF~~m~~ 997 (1074)
-++.+++ ++||..+..
T Consensus 125 ~~~~~~~~-k~GF~~~g~ 141 (152)
T PF13523_consen 125 TRAIRLYE-KAGFRKVGE 141 (152)
T ss_dssp HHHHHHHH-HTT-EEEEE
T ss_pred HHHHHHHH-HcCCEEeeE
Confidence 4667777 799998754
No 67
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=97.32 E-value=0.00055 Score=81.73 Aligned_cols=78 Identities=18% Similarity=0.280 Sum_probs=65.4
Q ss_pred eeCCeEEEEEEEEEecCeeE-----------Eeeeeee--------eccccccChhHHHHHHHHHHHhhcCceEEEEcch
Q 001460 919 ERGDEIISAASIRFHGTQLA-----------EMPFIGT--------RHIYRRQGMCRRLFCALESALCSLKVEKLIIPAI 979 (1074)
Q Consensus 919 e~~devVsaAsiRV~G~~~A-----------ElPlvAT--------~~~yRrQGmgR~Lv~aIE~~L~~LgVe~LvlpA~ 979 (1074)
..++.+|+-..+|+...... ||-..++ .++||+||+|+.||+++|+.++..|+..|+|.+-
T Consensus 420 ~~~~~l~G~lrlr~~~~~~~~~~~~~~a~IrelhV~G~~~~~~~~~~~~~rg~GiG~~Ll~~ae~~Ar~~G~~~i~v~s~ 499 (522)
T TIGR01211 420 PKNDILIGFLRLRFPSEPAHRKEVDATALVRELHVYGSEVPIGERGDDEWQHRGYGRRLLEEAERIAAEEGSEKILVISG 499 (522)
T ss_pred CCCCeEEEEEEEecCcccccccccCCCceEEEEEEeeeeccccccCChhHhCcCHHHHHHHHHHHHHHHCCCCEEEEeeC
Confidence 45678999888887764322 5655555 5899999999999999999999999999999998
Q ss_pred hhhHHHhhhccCcEEccH
Q 001460 980 AELMHTWTRVFGFTSLEE 997 (1074)
Q Consensus 980 ~ea~~~Wt~kFGF~~m~~ 997 (1074)
..|..||. ++||....+
T Consensus 500 ~~A~~FY~-klGf~~~g~ 516 (522)
T TIGR01211 500 IGVREYYR-KLGYELDGP 516 (522)
T ss_pred chHHHHHH-HCCCEEEcc
Confidence 99999999 699987654
No 68
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
Probab=97.30 E-value=0.00011 Score=79.83 Aligned_cols=45 Identities=33% Similarity=1.012 Sum_probs=38.5
Q ss_pred ccccccccccC--CCCcEecCC--CC-CcCCCCCCCCcCCCCCCCCCCCcc
Q 001460 716 PNDDTCGICGD--GGDLICCDG--CP-STFHQSCLDIQMLPPGDWHCPNCT 761 (1074)
Q Consensus 716 ~ndd~C~VCgd--GGdLLcCD~--Cp-rafH~~CL~p~~vP~g~W~Cp~C~ 761 (1074)
.+..+| -|.. -|+|+-||+ |. .+||+.|+++...|.|.|||+.|+
T Consensus 219 ~e~lYC-fCqqvSyGqMVaCDn~nCkrEWFH~~CVGLk~pPKG~WYC~eCk 268 (271)
T COG5034 219 GEELYC-FCQQVSYGQMVACDNANCKREWFHLECVGLKEPPKGKWYCPECK 268 (271)
T ss_pred CceeEE-EecccccccceecCCCCCchhheeccccccCCCCCCcEeCHHhH
Confidence 345677 6875 479999996 98 599999999999999999999996
No 69
>PF13302 Acetyltransf_3: Acetyltransferase (GNAT) domain; PDB: 3TTH_C 3JUW_A 2ZXV_A 2Z0Z_A 2VI7_B 3EG7_F 1YRE_C 3IGR_B 3FBU_A 2FCK_A ....
Probab=97.29 E-value=0.0018 Score=61.25 Aligned_cols=79 Identities=20% Similarity=0.231 Sum_probs=60.9
Q ss_pred ceEEEEe--eCCeEEEEEEEEEe--cCeeEEeeeeeeeccccccChhHHHHHHHHHHH-hhcCceEEEEcchhh---hHH
Q 001460 913 FYTAILE--RGDEIISAASIRFH--GTQLAEMPFIGTRHIYRRQGMCRRLFCALESAL-CSLKVEKLIIPAIAE---LMH 984 (1074)
Q Consensus 913 FYT~VLe--~~devVsaAsiRV~--G~~~AElPlvAT~~~yRrQGmgR~Lv~aIE~~L-~~LgVe~LvlpA~~e---a~~ 984 (1074)
+|.+++. .++++||...++.. ....|||- +.+.++|||+|+|+.++..+.+.+ ..+|+.+|++...++ ++.
T Consensus 56 ~~~~~i~~~~~~~~iG~i~~~~~~~~~~~~eig-~~i~~~~~g~G~~~~~~~~~~~~~~~~~~~~~i~a~~~~~N~~s~~ 134 (142)
T PF13302_consen 56 YYYFAIEDKDDGEIIGFIGLYNIDKNNNWAEIG-YWIGPDYRGKGYGTEALKLLLDWAFEELGLHRIIATVMADNEASRR 134 (142)
T ss_dssp EEEEEEEETTTTEEEEEEEEEEEETTTTEEEEE-EEEEGGGTTSSHHHHHHHHHHHHHHHTSTSSEEEEEEETT-HHHHH
T ss_pred ceEEEEEeccCCceEEEeeeeecccCCCccccc-cchhHHHHhhhHHHHHHHHHHHHHHhcCCcEEEEEEECcCCHHHHH
Confidence 4444444 44589999998443 35889999 669999999999999999999999 799999998877664 455
Q ss_pred HhhhccCcE
Q 001460 985 TWTRVFGFT 993 (1074)
Q Consensus 985 ~Wt~kFGF~ 993 (1074)
+.. |+||.
T Consensus 135 ~~~-k~GF~ 142 (142)
T PF13302_consen 135 LLE-KLGFE 142 (142)
T ss_dssp HHH-HTT-E
T ss_pred HHH-HcCCC
Confidence 566 68885
No 70
>COG2153 ElaA Predicted acyltransferase [General function prediction only]
Probab=97.27 E-value=0.0007 Score=68.97 Aligned_cols=82 Identities=18% Similarity=0.177 Sum_probs=66.4
Q ss_pred EEEeeCCeEEEEEEEEEecCeeEE--eeeeeeeccccccChhHHHHHHHHHHHhhcC-ceEEEEcchhhhHHHhhhccCc
Q 001460 916 AILERGDEIISAASIRFHGTQLAE--MPFIGTRHIYRRQGMCRRLFCALESALCSLK-VEKLIIPAIAELMHTWTRVFGF 992 (1074)
Q Consensus 916 ~VLe~~devVsaAsiRV~G~~~AE--lPlvAT~~~yRrQGmgR~Lv~aIE~~L~~Lg-Ve~LvlpA~~ea~~~Wt~kFGF 992 (1074)
++.+.+|++|+.|.|---+....+ |=-|+|.+++||+|+|+.||....+.+.... =+-++|.|-.-+.+||. .|||
T Consensus 53 ~~~~~~g~LvAyaRLl~~~~~~~~~~iGRV~v~~~~RG~glG~~Lm~~AL~~~~~~~p~~~v~l~AQahLq~fYa-~~GF 131 (155)
T COG2153 53 LGWTPDGELVAYARLLPPGAEYEEVSIGRVIVSPAARGQGLGQQLMEKALETAGREWPDKPVYLGAQAHLQDFYA-SFGF 131 (155)
T ss_pred EEEcCCCeEEEEEecCCCCCCcCceeeeeEEECHhhhccchhHHHHHHHHHHHHhhCCCCCeEEehHHHHHHHHH-HhCc
Confidence 344458999998877555555555 6678999999999999999987777766665 56699999999999999 5999
Q ss_pred EEccHH
Q 001460 993 TSLEES 998 (1074)
Q Consensus 993 ~~m~~~ 998 (1074)
.++++.
T Consensus 132 v~~~e~ 137 (155)
T COG2153 132 VRVGEE 137 (155)
T ss_pred EEcCch
Confidence 999974
No 71
>PRK10809 ribosomal-protein-S5-alanine N-acetyltransferase; Provisional
Probab=97.17 E-value=0.0019 Score=65.67 Aligned_cols=82 Identities=11% Similarity=0.123 Sum_probs=64.3
Q ss_pred ceEEEEeeCCeEEEEEEEEEecC---eeEEeeeeeeeccccccChhHHHHHHHHHHHhh-cCceEEEEcchh---hhHHH
Q 001460 913 FYTAILERGDEIISAASIRFHGT---QLAEMPFIGTRHIYRRQGMCRRLFCALESALCS-LKVEKLIIPAIA---ELMHT 985 (1074)
Q Consensus 913 FYT~VLe~~devVsaAsiRV~G~---~~AElPlvAT~~~yRrQGmgR~Lv~aIE~~L~~-LgVe~LvlpA~~---ea~~~ 985 (1074)
+|.+++..++++|+.+.|..... ..|||= +.+.++|||||+++.++.++.+.+.. +|+.+|++...+ -+..+
T Consensus 77 ~~~i~~~~~~~~iG~i~l~~~~~~~~~~~eig-~~i~~~~~G~G~~~ea~~~ll~~~~~~l~l~~i~~~v~~~N~~S~~l 155 (194)
T PRK10809 77 YFALLDPDEKEIIGVANFSNVVRGSFHACYLG-YSLGQKWQGQGLMFEALQAAIRYMQRQQHMHRIMANYMPHNKRSGDL 155 (194)
T ss_pred EEEEEECCCCeEEEEEEEEeecCCCeeeEEEE-EEECHHHcCCCHHHHHHHHHHHHHHhcCCceEEEEEeeCCCHHHHHH
Confidence 45555556789999999875432 345654 56799999999999999999999865 899999988765 46778
Q ss_pred hhhccCcEEcc
Q 001460 986 WTRVFGFTSLE 996 (1074)
Q Consensus 986 Wt~kFGF~~m~ 996 (1074)
+. |+||....
T Consensus 156 ~e-k~Gf~~~g 165 (194)
T PRK10809 156 LA-RLGFEKEG 165 (194)
T ss_pred HH-HCCCcEEe
Confidence 88 79999654
No 72
>PRK10151 ribosomal-protein-L7/L12-serine acetyltransferase; Provisional
Probab=96.97 E-value=0.0049 Score=61.88 Aligned_cols=80 Identities=18% Similarity=0.121 Sum_probs=62.2
Q ss_pred EEEeeCCeEEEEEEEEEecC--eeEEeeeeeeeccccccChhHHHHHHHHHHHh-hcCceEEEEcchh---hhHHHhhhc
Q 001460 916 AILERGDEIISAASIRFHGT--QLAEMPFIGTRHIYRRQGMCRRLFCALESALC-SLKVEKLIIPAIA---ELMHTWTRV 989 (1074)
Q Consensus 916 ~VLe~~devVsaAsiRV~G~--~~AElPlvAT~~~yRrQGmgR~Lv~aIE~~L~-~LgVe~LvlpA~~---ea~~~Wt~k 989 (1074)
+++..++++|+.+.+..... ..||+=. .+.++|||||+++.++.++.+.+. .+|+++|++...+ .+..++. |
T Consensus 70 ~~i~~~~~~iG~~~l~~~~~~~~~~~ig~-~i~~~~~g~G~~tea~~~l~~~~~~~~~~~ri~~~v~~~N~~S~~v~e-k 147 (179)
T PRK10151 70 FMIFKEDELIGVLSFNRIEPLNKTAYIGY-WLDESHQGQGIISQALQALIHHYAQSGELRRFVIKCRVDNPASNQVAL-R 147 (179)
T ss_pred EEEEECCEEEEEEEEEeeccCCCceEEEE-EEChhhcCCcHHHHHHHHHHHHHHhhCCccEEEEEEcCCCHHHHHHHH-H
Confidence 33345899999999875432 5688854 689999999999999998888775 5789998876554 4667887 7
Q ss_pred cCcEEccH
Q 001460 990 FGFTSLEE 997 (1074)
Q Consensus 990 FGF~~m~~ 997 (1074)
+||+....
T Consensus 148 ~Gf~~~g~ 155 (179)
T PRK10151 148 NGFTLEGC 155 (179)
T ss_pred CCCEEEeE
Confidence 99997654
No 73
>PF13718 GNAT_acetyltr_2: GNAT acetyltransferase 2; PDB: 2ZPA_B.
Probab=96.91 E-value=0.005 Score=65.53 Aligned_cols=98 Identities=21% Similarity=0.260 Sum_probs=62.2
Q ss_pred CcceEEEEeeCC--eEEEEEEEEEecC-------------------------------------eeEEeeeeeeeccccc
Q 001460 911 SGFYTAILERGD--EIISAASIRFHGT-------------------------------------QLAEMPFIGTRHIYRR 951 (1074)
Q Consensus 911 ~GFYT~VLe~~d--evVsaAsiRV~G~-------------------------------------~~AElPlvAT~~~yRr 951 (1074)
-.+..+||...+ +||+|+-+-.-|. .-++|--|||.|++|+
T Consensus 25 P~h~l~~l~~~~~p~il~~~~v~~EG~l~~~l~~~i~~g~rRp~G~LiP~~L~~~~~~~~f~~l~g~RIvRIAvhP~~q~ 104 (196)
T PF13718_consen 25 PNHRLFVLLQPGDPDILGVAQVALEGGLSKELIEAILSGGRRPKGHLIPQTLAQHFGDPEFAQLSGARIVRIAVHPDLQR 104 (196)
T ss_dssp TTEEEEEEE-SS--SEEEEEEEEEEE---HHHHHHHHTTS---SS-HHHHHHHHHSS-TTGGGSEEEEEEEEEE-CCC-S
T ss_pred CcceeehhccCCCceEEEEEEEEecCCCCHHHHHHHHhCCCCCCCCCHHHHHHHHhCCHHHHhhcceeEEEEEEChhhhc
Confidence 345567777777 8998887755442 2356778999999999
Q ss_pred cChhHHHHHHHHHHH-------------------------hhcCceEEEEc--chhhhHHHhhhccCcEEccHH-HHHhh
Q 001460 952 QGMCRRLFCALESAL-------------------------CSLKVEKLIIP--AIAELMHTWTRVFGFTSLEES-LKQEM 1003 (1074)
Q Consensus 952 QGmgR~Lv~aIE~~L-------------------------~~LgVe~Lvlp--A~~ea~~~Wt~kFGF~~m~~~-~k~~~ 1003 (1074)
+|||+.|++.+++.+ ..-+|..|=.. +.++++.||+ +.||.++=-. .+...
T Consensus 105 ~G~Gs~lL~~l~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~vDylGtSFG~t~~Ll~FW~-k~gf~pv~l~~~~n~~ 183 (196)
T PF13718_consen 105 MGYGSRLLQQLEQYAEGKIPSLSEQDKEKLPPLLSKLSDRRPPGVDYLGTSFGATPELLKFWQ-KNGFVPVYLGQTRNEA 183 (196)
T ss_dssp SSHHHHHHHHHHHT-----------------------------S-SEEEEEEE--HHHHHHHH-CTT-EEEEE-SS--TT
T ss_pred CCHHHHHHHHHHHHHhhhcccccccccccccccccccccccccCCCEEEeccCCCHHHHHHHH-HCCcEEEEEecCcccc
Confidence 999999999999999 46677776443 5789999999 6999998743 34443
Q ss_pred h-cccee
Q 001460 1004 R-SLNML 1009 (1074)
Q Consensus 1004 ~-~~~ll 1009 (1074)
. +|.++
T Consensus 184 SGe~S~i 190 (196)
T PF13718_consen 184 SGEHSAI 190 (196)
T ss_dssp T---EEE
T ss_pred cCceeee
Confidence 3 35544
No 74
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=96.81 E-value=0.00098 Score=81.56 Aligned_cols=69 Identities=30% Similarity=0.772 Sum_probs=50.1
Q ss_pred CCCCcCCCCCCCCcC--CCCCCCCCCCcc--------------------ccccCCCCCCCCCCCCCCCcccccCCcchhh
Q 001460 735 GCPSTFHQSCLDIQM--LPPGDWHCPNCT--------------------CKFCGLAGEDDAEGDDTTTSALLPCAMCEKK 792 (1074)
Q Consensus 735 ~CprafH~~CL~p~~--vP~g~W~Cp~C~--------------------C~~Cg~~~~d~~eed~~s~~~Ll~CdQCer~ 792 (1074)
.|+++||..|++|.. -|+++|.|+.|. |.+|+.. +.++.|+.|..+
T Consensus 1 ~~~r~~~~~~~~p~~~~~~~~~~k~~~~e~~~~~~~~~~~~~~~~~~e~c~ic~~~------------g~~l~c~tC~~s 68 (696)
T KOG0383|consen 1 TCPRAYHRVCLDPKLKEEPEMDPKCPGCESSSAQVEAKDDDWDDAEQEACRICADG------------GELLWCDTCPAS 68 (696)
T ss_pred CCCcccCcCCCCcccccCCcCCccCcchhhcccccccccCCcchhhhhhhhhhcCC------------CcEEEeccccHH
Confidence 499999999999743 467999999885 4444322 347789999999
Q ss_pred hhhhccccccccccCCCCCccceeCCcc
Q 001460 793 YHKLCMQEMDALSDNLTGLVTSFCGRKC 820 (1074)
Q Consensus 793 YHv~CL~~~d~~p~~~~p~~~WFCs~~C 820 (1074)
||..|+... ....+...|.|. .|
T Consensus 69 ~h~~cl~~p----l~~~p~~~~~c~-Rc 91 (696)
T KOG0383|consen 69 FHASCLGPP----LTPQPNGEFICP-RC 91 (696)
T ss_pred HHHHccCCC----CCcCCccceeee-ee
Confidence 999999742 222233448887 66
No 75
>COG3153 Predicted acetyltransferase [General function prediction only]
Probab=96.57 E-value=0.012 Score=61.66 Aligned_cols=140 Identities=16% Similarity=0.145 Sum_probs=88.9
Q ss_pred cccchhhhHHHhhhhcccccccccCCCCcccchhhhccCCCCcccccCcceEEEEeeCCeEEEEEEEE---EecC--eeE
Q 001460 864 VECNSKLAVALNVMDECFLPIVDRRSGINLIHNVLYNSGSNFNRLNYSGFYTAILERGDEIISAASIR---FHGT--QLA 938 (1074)
Q Consensus 864 vEcnSKLAvALtIm~ECF~PIvD~rTGrDLIpdmVYn~GSnFkRldF~GFYT~VLe~~devVsaAsiR---V~G~--~~A 938 (1074)
+|+-...+....+.++.|.|-. ...++...--. + + |.---.+|-+.+++||+...+- +-|. .+.
T Consensus 8 ~e~~~d~~~i~~~~~~aF~~~~----e~~~v~~lR~~-~----~--~~~~LslVA~d~g~vvG~Il~s~v~~~g~~~~~~ 76 (171)
T COG3153 8 TETPADIPAIEALTREAFGPGR----EAKLVDKLREG-G----R--PDLTLSLVAEDDGEVVGHILFSPVTVGGEELGWL 76 (171)
T ss_pred ecChhhHHHHHHHHHHHhhcch----HHHHHHHHHhc-C----C--cccceeEEEeeCCEEEEEEEEeEEEecCcccceE
Confidence 3444445555567778888432 23334333210 1 1 1112355667889998865432 1122 344
Q ss_pred EeeeeeeeccccccChhHHHHHHHHHHHhhcCceEEEEcchhhhHHHhhhccCcEEccHHHHHhhhccceeeecCcceee
Q 001460 939 EMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAIAELMHTWTRVFGFTSLEESLKQEMRSLNMLVFPGIDMLQ 1018 (1074)
Q Consensus 939 ElPlvAT~~~yRrQGmgR~Lv~aIE~~L~~LgVe~LvlpA~~ea~~~Wt~kFGF~~m~~~~k~~~~~~~ll~FpGt~mLq 1018 (1074)
=|=-+|+.|+||+||+|++||.+.++.|+.+|...+++--.+. .| .+|||.+.....-. .... .|.+.+|.
T Consensus 77 ~LaPLaV~p~~qg~GIG~~Lvr~~le~a~~~G~~~v~vlGdp~---YY-~rfGF~~~~~~~l~----~p~~-~~~~~fl~ 147 (171)
T COG3153 77 GLAPLAVDPEYQGQGIGSALVREGLEALRLAGASAVVVLGDPT---YY-SRFGFEPAAGAKLY----APGP-VPDERFLA 147 (171)
T ss_pred EEEeEEEchhhcCCcHHHHHHHHHHHHHHHCCCCEEEEecCcc---cc-cccCcEEccccccc----cCCC-CCCceEEE
Confidence 4556799999999999999999999999999999999877654 55 58999998752110 1111 56777777
Q ss_pred ecccc
Q 001460 1019 KLLLE 1023 (1074)
Q Consensus 1019 K~L~~ 1023 (1074)
+.|..
T Consensus 148 ~~L~~ 152 (171)
T COG3153 148 LELGD 152 (171)
T ss_pred EEccC
Confidence 77753
No 76
>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=96.40 E-value=0.002 Score=65.74 Aligned_cols=31 Identities=39% Similarity=0.913 Sum_probs=25.5
Q ss_pred cCCCCCCCCc--CCCCCCCCCCCccccccCCCC
Q 001460 739 TFHQSCLDIQ--MLPPGDWHCPNCTCKFCGLAG 769 (1074)
Q Consensus 739 afH~~CL~p~--~vP~g~W~Cp~C~C~~Cg~~~ 769 (1074)
.||++||+|| .+|+|+|+||.|.....+...
T Consensus 1 g~H~~CL~Ppl~~~P~g~W~Cp~C~~~~~~~~~ 33 (148)
T cd04718 1 GFHLCCLRPPLKEVPEGDWICPFCEVEKSGQSA 33 (148)
T ss_pred CcccccCCCCCCCCCCCCcCCCCCcCCCCCCcc
Confidence 5999999987 489999999999876555443
No 77
>PF08444 Gly_acyl_tr_C: Aralkyl acyl-CoA:amino acid N-acyltransferase, C-terminal region; InterPro: IPR013652 This entry represents mammalian-specific glycine N-acyltransferase (also called aralkyl acyl-CoA:amino acid N-acyltransferase; 2.3.1.13 from EC). Mitochondrial acyltransferases catalyse the transfer of an acyl group from acyl-CoA to the N terminus of glycine to produce N-acylglycine. These enzymes can conjugate a multitude of substrates to form a variety of N-acylglycines. The CoA derivatives of a number of aliphatic and aromatic acids, but not phenylacetyl-CoA or (indol-3-yl)acetyl-CoA, can act as donor [, ].
Probab=96.25 E-value=0.0084 Score=56.78 Aligned_cols=74 Identities=20% Similarity=0.157 Sum_probs=57.3
Q ss_pred EEeeCCeEEEEEEEEEecCeeEEeeeeeeeccccccChhHHHHHHHHHHHhhcCceEEEEcchhh---hHHHhhhccCcE
Q 001460 917 ILERGDEIISAASIRFHGTQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAIAE---LMHTWTRVFGFT 993 (1074)
Q Consensus 917 VLe~~devVsaAsiRV~G~~~AElPlvAT~~~yRrQGmgR~Lv~aIE~~L~~LgVe~LvlpA~~e---a~~~Wt~kFGF~ 993 (1074)
||-..|.+||=... .+.+||+...|.|+|||||+.+.++....+.|..+|+.-. +..+++ ...+-. .+||.
T Consensus 3 llgpeG~PVSW~lm----dqtge~rmgyTlPeyR~~G~~~~v~~~~~~~L~~~g~P~Y-~hv~~~N~~~~r~~~-~lg~~ 76 (89)
T PF08444_consen 3 LLGPEGNPVSWSLM----DQTGEMRMGYTLPEYRGQGLMSQVMYHLAQYLHKLGFPFY-GHVDEDNEASQRLSK-SLGFI 76 (89)
T ss_pred ccCCCCCEeEEEEe----cccccccccccCHhHhcCCHHHHHHHHHHHHHHHCCCCeE-eehHhccHHHHHHHH-HCCCe
Confidence 56677889887665 4679999999999999999999999999999999999853 233322 223333 58888
Q ss_pred Ecc
Q 001460 994 SLE 996 (1074)
Q Consensus 994 ~m~ 996 (1074)
.|+
T Consensus 77 ~~p 79 (89)
T PF08444_consen 77 FMP 79 (89)
T ss_pred ecC
Confidence 776
No 78
>COG1247 Sortase and related acyltransferases [Cell envelope biogenesis, outer membrane]
Probab=96.22 E-value=0.032 Score=58.38 Aligned_cols=110 Identities=18% Similarity=0.190 Sum_probs=75.5
Q ss_pred cCcceEEEEeeC-CeEEEEEEEEEecC-----eeEEeeeeeeeccccccChhHHHHHHHHHHHhhcCceEEEEcchh--h
Q 001460 910 YSGFYTAILERG-DEIISAASIRFHGT-----QLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAIA--E 981 (1074)
Q Consensus 910 F~GFYT~VLe~~-devVsaAsiRV~G~-----~~AElPlvAT~~~yRrQGmgR~Lv~aIE~~L~~LgVe~LvlpA~~--e 981 (1074)
=.|||-+|++.+ ++|++-|++--|.. .++|.. |=+++++||+|+|+.|+.++...+..+||..++-.-.. .
T Consensus 49 ~~g~p~~V~~~~~g~v~G~a~~~~fr~r~ay~~tve~S-iYv~~~~~g~GiG~~Ll~~Li~~~~~~g~~~lva~I~~~n~ 127 (169)
T COG1247 49 RDGYPVVVAEEEDGKVLGYASAGPFRERPAYRHTVELS-IYLDPAARGKGLGKKLLQALITEARALGVRELVAGIESDNL 127 (169)
T ss_pred cCCceEEEEEcCCCeEEEEEEeeeccCccccceEEEEE-EEECcccccccHHHHHHHHHHHHHHhCCeEEEEEEEcCCCc
Confidence 357888888765 89999888766654 556654 45789999999999999999999999999887633222 2
Q ss_pred hHHHhhhccCcEEccHHHHHhhhccceeeecCcceeeecccc
Q 001460 982 LMHTWTRVFGFTSLEESLKQEMRSLNMLVFPGIDMLQKLLLE 1023 (1074)
Q Consensus 982 a~~~Wt~kFGF~~m~~~~k~~~~~~~ll~FpGt~mLqK~L~~ 1023 (1074)
+---.-.+|||...-....- ....=.|=.+.+||+.|.+
T Consensus 128 aSi~lh~~~GF~~~G~~~~v---g~k~g~wld~~~~~~~l~~ 166 (169)
T COG1247 128 ASIALHEKLGFEEVGTFPEV---GDKFGRWLDLVLMQLLLEE 166 (169)
T ss_pred HhHHHHHHCCCEEecccccc---ccccceEEeeeeeehhhcc
Confidence 22233338999988753221 1222334445667776643
No 79
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the PF12746 GNAT_acetyltran: GNAT acetyltransferase; PDB: 3G3S_B.
Probab=95.84 E-value=0.046 Score=60.70 Aligned_cols=76 Identities=18% Similarity=0.046 Sum_probs=55.5
Q ss_pred eeCCeEEEEEEEEEecCeeEEeeeeeeeccccccChhHHHHHHHHHHHhhcCceEEEEcchhhhHHHhhhccCcEEcc
Q 001460 919 ERGDEIISAASIRFHGTQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAIAELMHTWTRVFGFTSLE 996 (1074)
Q Consensus 919 e~~devVsaAsiRV~G~~~AElPlvAT~~~yRrQGmgR~Lv~aIE~~L~~LgVe~LvlpA~~ea~~~Wt~kFGF~~m~ 996 (1074)
..+++|||.|+-.......+||= |+|.++|||||+.+++..++...+..-|+--.|-.+-...+.+=. |+||+...
T Consensus 171 ~~~~~iVs~~~s~~~~~~~~EI~-I~T~~~yR~kGLA~~~aa~~I~~Cl~~~l~P~WDc~N~~S~~lA~-kLGf~~~~ 246 (265)
T PF12746_consen 171 LHDGEIVSGCSSYFVYENGIEID-IETHPEYRGKGLATAVAAAFILECLENGLYPSWDCHNLASIALAE-KLGFHFDF 246 (265)
T ss_dssp EETTEEEEEEEEEEEETTEEEEE-EEE-CCCTTSSHHHHHHHHHHHHHHHTT-EEE-EESSHHHHHHHH-HCT--EEE
T ss_pred EECCEEEEEEEEEEEECCEEEEE-EEECHHhhcCCHHHHHHHHHHHHHHHCCCCcCeeCCCHHHHHHHH-HcCCcccc
Confidence 36899999776666666778985 799999999999999999999999999999999654333333333 79998653
No 81
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=95.79 E-value=0.0021 Score=53.23 Aligned_cols=38 Identities=18% Similarity=0.619 Sum_probs=26.3
Q ss_pred cccccCCcchhhhhhhccccccccccCCCCCccceeCCcch
Q 001460 781 SALLPCAMCEKKYHKLCMQEMDALSDNLTGLVTSFCGRKCQ 821 (1074)
Q Consensus 781 ~~Ll~CdQCer~YHv~CL~~~d~~p~~~~p~~~WFCs~~Ck 821 (1074)
..++.|+.|.++||..|+........ .+...|+|+ .|.
T Consensus 12 ~~~i~C~~C~~~~H~~C~~~~~~~~~--~~~~~w~C~-~C~ 49 (51)
T PF00628_consen 12 GDMIQCDSCNRWYHQECVGPPEKAEE--IPSGDWYCP-NCR 49 (51)
T ss_dssp SSEEEBSTTSCEEETTTSTSSHSHHS--HHSSSBSSH-HHH
T ss_pred CCeEEcCCCChhhCcccCCCChhhcc--CCCCcEECc-CCc
Confidence 45899999999999999986432111 122389985 554
No 82
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=95.75 E-value=0.0039 Score=72.99 Aligned_cols=50 Identities=30% Similarity=0.951 Sum_probs=39.2
Q ss_pred ccccccc-----CCCCcEecCCCCCcCCCCCCCCc---CCCC-------CCCCCCCcc-------ccccCCC
Q 001460 719 DTCGICG-----DGGDLICCDGCPSTFHQSCLDIQ---MLPP-------GDWHCPNCT-------CKFCGLA 768 (1074)
Q Consensus 719 d~C~VCg-----dGGdLLcCD~CprafH~~CL~p~---~vP~-------g~W~Cp~C~-------C~~Cg~~ 768 (1074)
.+|.||- +.+++|-||.|+-..|-.|++.. ++|. ..|||..|. |.+|...
T Consensus 120 ~iCcVClg~rs~da~ei~qCd~CGi~VHEgCYGv~dn~si~s~~s~~stepWfCeaC~~Gvs~P~CElCPn~ 191 (707)
T KOG0957|consen 120 VICCVCLGQRSVDAGEILQCDKCGINVHEGCYGVLDNVSIPSGSSDCSTEPWFCEACLYGVSLPHCELCPNR 191 (707)
T ss_pred eEEEEeecCccccccceeeccccCceecccccccccccccCCCCccCCCCchhhhhHhcCCCCCccccCCCc
Confidence 3899995 45789999999999999999963 2332 469999997 6777533
No 83
>PF12568 DUF3749: Acetyltransferase (GNAT) domain; InterPro: IPR024612 This domain is found in uncharacterised proteins from Gammaproteobacteria, and is approximately 40 amino acids in length. It contains two completely conserved residues (D and I) that may be functionally important. Proteins having this domain are frequently annotated as acetyltransferases of the GNAT family; however there is little accompanying annotation to confirm this.; PDB: 2K5T_A.
Probab=95.64 E-value=0.077 Score=53.43 Aligned_cols=80 Identities=18% Similarity=0.342 Sum_probs=57.5
Q ss_pred cceEEEEeeCCeEEEEEEEEEecCeeEEeeeeeeeccccccChhHHHHHHHHHHHhhcCceEEEEcchh------hhHHH
Q 001460 912 GFYTAILERGDEIISAASIRFHGTQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAIA------ELMHT 985 (1074)
Q Consensus 912 GFYT~VLe~~devVsaAsiRV~G~~~AElPlvAT~~~yRrQGmgR~Lv~aIE~~L~~LgVe~LvlpA~~------ea~~~ 985 (1074)
-+|+ -+.|+.+++|+-+.+.|. .|+|--+.|++.-||.|+|..|++.+.+.+ -+|...++.+.. .++..
T Consensus 39 ~l~a--ArFNdRlLgAv~v~~~~~-~~~L~~l~VRevTRrRGVG~yLlee~~rq~--p~i~~w~l~~~~~~~~~~~~~~~ 113 (128)
T PF12568_consen 39 RLFA--ARFNDRLLGAVKVTISGQ-QAELSDLCVREVTRRRGVGLYLLEEVLRQL--PDIKHWWLADEGVEPQDRAVMAA 113 (128)
T ss_dssp EEEE--EEETTEEEEEEEEEEETT-EEEEEEEEE-TT-SSSSHHHHHHHHHHHHS---S--EEEE--TT-S--THHHHHH
T ss_pred eEEE--EEechheeeeEEEEEcCc-ceEEeeEEEeeccccccHHHHHHHHHHHHC--CCCcEEEEecCCCcccchHHHHH
Confidence 3444 468999999999999874 799999999999999999999999999998 677777776653 34444
Q ss_pred hhhccCcEEcc
Q 001460 986 WTRVFGFTSLE 996 (1074)
Q Consensus 986 Wt~kFGF~~m~ 996 (1074)
....+||+..+
T Consensus 114 Fm~a~GF~~~~ 124 (128)
T PF12568_consen 114 FMQACGFSAQS 124 (128)
T ss_dssp HHHHHT-EE-S
T ss_pred HHHHcCccccC
Confidence 44479997754
No 84
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=95.51 E-value=0.0031 Score=82.46 Aligned_cols=45 Identities=40% Similarity=1.056 Sum_probs=39.2
Q ss_pred cccccccccCCC---CcEecCCCCCcCCCCCCCC--cCCCCCCCCCCCcc
Q 001460 717 NDDTCGICGDGG---DLICCDGCPSTFHQSCLDI--QMLPPGDWHCPNCT 761 (1074)
Q Consensus 717 ndd~C~VCgdGG---dLLcCD~CprafH~~CL~p--~~vP~g~W~Cp~C~ 761 (1074)
....|.+|...+ +|+.|+.|...||.+|+.| ..+|.++|+|+.|+
T Consensus 1107 ~~~~c~~cr~k~~~~~m~lc~~c~~~~h~~C~rp~~~~~~~~dW~C~~c~ 1156 (1404)
T KOG1245|consen 1107 VNALCKVCRRKKQDEKMLLCDECLSGFHLFCLRPALSSVPPGDWMCPSCR 1156 (1404)
T ss_pred chhhhhhhhhcccchhhhhhHhhhhhHHHHhhhhhhccCCcCCccCCccc
Confidence 346899997654 4999999999999999997 46899999999998
No 85
>COG0454 WecD Histone acetyltransferase HPA2 and related acetyltransferases [Transcription / General function prediction only]
Probab=95.50 E-value=0.018 Score=47.57 Aligned_cols=44 Identities=16% Similarity=0.110 Sum_probs=39.0
Q ss_pred eeeeccccccChhHHHHHHHHHHHhhcCceEEEEcchhhhHHHhhhccCc
Q 001460 943 IGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAIAELMHTWTRVFGF 992 (1074)
Q Consensus 943 vAT~~~yRrQGmgR~Lv~aIE~~L~~LgVe~LvlpA~~ea~~~Wt~kFGF 992 (1074)
+++.++||+||+|+.|+.++++.+...|+. ....++.+|. .+||
T Consensus 87 l~v~~~~rg~Gig~~Ll~~~~~~~~~~g~~-----~~~~~~~~~~-~~~~ 130 (156)
T COG0454 87 LYVLPEYRGKGIGSALLEAALEWARKRGIS-----LNRLALEVYE-KNGF 130 (156)
T ss_pred EEecchhhccchHHHHHHHHHHHHHHcCce-----ehHHHHHHHH-hcCC
Confidence 999999999999999999999999998887 5566777888 5777
No 86
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=95.37 E-value=0.0055 Score=74.77 Aligned_cols=52 Identities=25% Similarity=0.666 Sum_probs=39.2
Q ss_pred CCccccccCCCCCCCCCCCCCCCcccccCCcchhh-hhhhccccccccccCCCCCccceeCCcchhh
Q 001460 758 PNCTCKFCGLAGEDDAEGDDTTTSALLPCAMCEKK-YHKLCMQEMDALSDNLTGLVTSFCGRKCQEL 823 (1074)
Q Consensus 758 p~C~C~~Cg~~~~d~~eed~~s~~~Ll~CdQCer~-YHv~CL~~~d~~p~~~~p~~~WFCs~~CkeI 823 (1074)
..|.|.+|+.+... ..|++|+.|... ||.+||.+ ++...+-..|||. .|..+
T Consensus 214 E~~~C~IC~~~DpE---------dVLLLCDsCN~~~YH~YCLDP----dl~eiP~~eWYC~-NC~dL 266 (1134)
T KOG0825|consen 214 EEVKCDICTVHDPE---------DVLLLCDSCNKVYYHVYCLDP----DLSESPVNEWYCT-NCSLL 266 (1134)
T ss_pred ccccceeeccCChH---------HhheeecccccceeeccccCc----ccccccccceecC-cchhh
Confidence 35789999877643 348999999988 99999985 3334566889995 88754
No 87
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A.
Probab=95.26 E-value=0.0017 Score=51.81 Aligned_cols=34 Identities=41% Similarity=1.089 Sum_probs=20.2
Q ss_pred CCcEecCCCCCcCCCCCCCCcCCCCC-CCCCCCcc
Q 001460 728 GDLICCDGCPSTFHQSCLDIQMLPPG-DWHCPNCT 761 (1074)
Q Consensus 728 GdLLcCD~CprafH~~CL~p~~vP~g-~W~Cp~C~ 761 (1074)
..||.|+.|.-++|..|.++..+|.+ +|+|..|.
T Consensus 2 n~ll~C~~C~v~VH~~CYGv~~~~~~~~W~C~~C~ 36 (36)
T PF13831_consen 2 NPLLFCDNCNVAVHQSCYGVSEVPDGDDWLCDRCE 36 (36)
T ss_dssp CEEEE-SSS--EEEHHHHT-SS--SS-----HHH-
T ss_pred CceEEeCCCCCcCChhhCCcccCCCCCcEECCcCC
Confidence 35899999999999999999888876 89998773
No 88
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]
Probab=95.16 E-value=0.0064 Score=67.39 Aligned_cols=35 Identities=17% Similarity=0.549 Sum_probs=27.1
Q ss_pred cccccCCc--ch-hhhhhhccccccccccCCCCCccceeCCcchh
Q 001460 781 SALLPCAM--CE-KKYHKLCMQEMDALSDNLTGLVTSFCGRKCQE 822 (1074)
Q Consensus 781 ~~Ll~CdQ--Ce-r~YHv~CL~~~d~~p~~~~p~~~WFCs~~Cke 822 (1074)
+.|+.||. |+ .|||..|+.- ...|.+.|||+ .|..
T Consensus 230 g~Mi~CDn~~C~~eWFH~~CVGL------~~~PkgkWyC~-~C~~ 267 (274)
T KOG1973|consen 230 GKMIGCDNPGCPIEWFHFTCVGL------KTKPKGKWYCP-RCKA 267 (274)
T ss_pred ccccccCCCCCCcceEEEecccc------ccCCCCcccch-hhhh
Confidence 46899987 99 9999999873 23466789998 6654
No 89
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=95.14 E-value=0.0066 Score=71.39 Aligned_cols=43 Identities=33% Similarity=0.858 Sum_probs=34.9
Q ss_pred cccccccCCC-----CcEecCCCCCcCCCCCCCCcC------CCCCCCCCCCcc
Q 001460 719 DTCGICGDGG-----DLICCDGCPSTFHQSCLDIQM------LPPGDWHCPNCT 761 (1074)
Q Consensus 719 d~C~VCgdGG-----dLLcCD~CprafH~~CL~p~~------vP~g~W~Cp~C~ 761 (1074)
..|.+|..++ .||.|+.|...||+.|..+.. -+...|||..|.
T Consensus 169 ~qc~vC~~g~~~~~NrmlqC~~C~~~fHq~Chqp~i~~~l~~D~~~~w~C~~C~ 222 (464)
T KOG4323|consen 169 LQCSVCYCGGPGAGNRMLQCDKCRQWYHQACHQPLIKDELAGDPFYEWFCDVCN 222 (464)
T ss_pred ceeeeeecCCcCccceeeeecccccHHHHHhccCCCCHhhccCccceEeehhhc
Confidence 4599997543 699999999999999998742 356789998885
No 90
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=95.08 E-value=0.0084 Score=70.39 Aligned_cols=44 Identities=39% Similarity=1.010 Sum_probs=36.3
Q ss_pred ccccccccCCCC---cEecCCCCCcCCCCCCCCcC--CCC----CCCCCCCcc
Q 001460 718 DDTCGICGDGGD---LICCDGCPSTFHQSCLDIQM--LPP----GDWHCPNCT 761 (1074)
Q Consensus 718 dd~C~VCgdGGd---LLcCD~CprafH~~CL~p~~--vP~----g~W~Cp~C~ 761 (1074)
...|++|...-+ |+.||.|...||+.||+||. +|. ..|+|..|.
T Consensus 544 ~ysCgiCkks~dQHll~~CDtC~lhYHlGCL~PPLTR~Pkk~kn~gWqCsECd 596 (707)
T KOG0957|consen 544 NYSCGICKKSTDQHLLTQCDTCHLHYHLGCLSPPLTRLPKKNKNFGWQCSECD 596 (707)
T ss_pred ceeeeeeccchhhHHHhhcchhhceeeccccCCccccCcccccCcceeecccc
Confidence 468999987654 89999999999999999974 454 459999883
No 91
>COG3053 CitC Citrate lyase synthetase [Energy production and conversion]
Probab=95.02 E-value=0.079 Score=59.67 Aligned_cols=80 Identities=20% Similarity=0.329 Sum_probs=71.7
Q ss_pred eEEEEeeCCeEEEEEEEEEecCeeEEeeeeeeeccccccChhHHHHHHHHHHHhhcCceEEEEcchhhhHHHhhhccCcE
Q 001460 914 YTAILERGDEIISAASIRFHGTQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAIAELMHTWTRVFGFT 993 (1074)
Q Consensus 914 YT~VLe~~devVsaAsiRV~G~~~AElPlvAT~~~yRrQGmgR~Lv~aIE~~L~~LgVe~LvlpA~~ea~~~Wt~kFGF~ 993 (1074)
.+++...+++||+|+++ .| --|.-|||++.+||-|.-=.|+.++-..+-++|.-.||+-.-++-..+... +||.
T Consensus 38 ~v~~~~~~~~iiacGsi--aG---nvikcvAvs~s~qGeGl~lkl~TeLin~ay~~g~~hLFiyTKp~~~~lFk~-~GF~ 111 (352)
T COG3053 38 FVAIYRDNEEIIACGSI--AG---NVIKCVAVSESLQGEGLALKLVTELINLAYERGRTHLFIYTKPEYAALFKQ-CGFS 111 (352)
T ss_pred EEEEEcCCCcEEEeccc--cc---ceeEEEEechhcccccHHHHHHHHHHHHHHHcCCceEEEEechhHHHHHHh-CCce
Confidence 46666778999999997 67 458999999999999999999999999999999999999999999999985 9999
Q ss_pred EccHHH
Q 001460 994 SLEESL 999 (1074)
Q Consensus 994 ~m~~~~ 999 (1074)
.+..-+
T Consensus 112 ~i~~~~ 117 (352)
T COG3053 112 EIASAE 117 (352)
T ss_pred EeeccC
Confidence 988643
No 92
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=94.88 E-value=0.034 Score=69.06 Aligned_cols=59 Identities=22% Similarity=0.262 Sum_probs=47.7
Q ss_pred EEeeeeeeeccccccChhHHHHHHHHHHHhhcCceEEEEc--chhhhHHHhhhccCcEEccHH
Q 001460 938 AEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIP--AIAELMHTWTRVFGFTSLEES 998 (1074)
Q Consensus 938 AElPlvAT~~~yRrQGmgR~Lv~aIE~~L~~LgVe~Lvlp--A~~ea~~~Wt~kFGF~~m~~~ 998 (1074)
++|-=|||.|++|++|+|++|++.|.+.+. -++..|-.. +.++++.||. +.||.+|=-.
T Consensus 532 ~RIvRIAvhPe~q~~GiGsrlL~~l~~~a~-~~~DwlgvsFG~t~~L~rFW~-rnGF~pVhls 592 (758)
T COG1444 532 WRIVRIAVHPELQRMGIGSRLLALLIEEAR-KGLDWLGVSFGYTEELLRFWL-RNGFVPVHLS 592 (758)
T ss_pred eeEEEEEeCHHHHhcCHHHHHHHHHHHHHh-cCCCEEeeccCCCHHHHHHHH-HcCeEEEEec
Confidence 555568999999999999999999999986 444444333 5789999999 6999998753
No 93
>KOG3216 consensus Diamine acetyltransferase [Amino acid transport and metabolism]
Probab=94.77 E-value=0.17 Score=52.52 Aligned_cols=121 Identities=17% Similarity=0.181 Sum_probs=84.7
Q ss_pred chhhhHHHhhhhcccccccccCCCCcccchhhhccCCCCcccccCcceEEEEee-CCeEEEEEEEEEe-----cCeeEEe
Q 001460 867 NSKLAVALNVMDECFLPIVDRRSGINLIHNVLYNSGSNFNRLNYSGFYTAILER-GDEIISAASIRFH-----GTQLAEM 940 (1074)
Q Consensus 867 nSKLAvALtIm~ECF~PIvD~rTGrDLIpdmVYn~GSnFkRldF~GFYT~VLe~-~devVsaAsiRV~-----G~~~AEl 940 (1074)
.-+|-.-|+.|+.+=+|.+-+.+ +|-.+- |..-.|.=.+.+.++. +.++|+-|.+..+ |.+.-=|
T Consensus 17 i~rLikela~Fek~~~~v~~te~--~l~~~~-------F~d~~~~~~~v~~ie~~~~~~aGf~~yf~~ystW~~k~~iYl 87 (163)
T KOG3216|consen 17 ILRLIKELAEFEKLEDQVEATEE--NLARDG-------FIDPPFKHWLVAAIETSGEVVAGFALYFNNYSTWLGKQGIYL 87 (163)
T ss_pred HHHHHHHHHHHHHhccchhhchh--hhhhhh-------ccCCCccEEEEEEEecCCCceeEEeeeecccccccccceEEE
Confidence 34555667777777777654333 221110 3334455556666665 8889998887643 3344455
Q ss_pred eeeeeeccccccChhHHHHHHHHHHHhhcCceEE---EEcchhhhHHHhhhccCcEEccH
Q 001460 941 PFIGTRHIYRRQGMCRRLFCALESALCSLKVEKL---IIPAIAELMHTWTRVFGFTSLEE 997 (1074)
Q Consensus 941 PlvAT~~~yRrQGmgR~Lv~aIE~~L~~LgVe~L---vlpA~~ea~~~Wt~kFGF~~m~~ 997 (1074)
-=+=++++|||+|+|+.|++.+-+.+..+|+.++ |+.--.-|+.+|+ +.|++.+..
T Consensus 88 eDlyV~e~yR~kG~Gs~Ll~~va~~A~~~G~~rv~w~vldwN~rAi~lY~-k~gaq~l~~ 146 (163)
T KOG3216|consen 88 EDLYVREQYRGKGIGSKLLKFVAEEADKLGTPRVEWVVLDWNHRAILLYE-KVGAQDLKE 146 (163)
T ss_pred EeeEecchhcccChHHHHHHHHHHHHHHcCCCcEEEEEeccchhHHHHHH-HhCccccce
Confidence 5677999999999999999999999999998774 5666678999999 588887765
No 94
>COG1670 RimL Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]
Probab=94.39 E-value=0.24 Score=48.39 Aligned_cols=86 Identities=19% Similarity=0.179 Sum_probs=64.7
Q ss_pred CcceEEEEeeCC--eEEEEEEEEEec----CeeEEeeeeeeeccccccChhHHHHHHHHHHHhh-cCceEEEEcchhhhH
Q 001460 911 SGFYTAILERGD--EIISAASIRFHG----TQLAEMPFIGTRHIYRRQGMCRRLFCALESALCS-LKVEKLIIPAIAELM 983 (1074)
Q Consensus 911 ~GFYT~VLe~~d--evVsaAsiRV~G----~~~AElPlvAT~~~yRrQGmgR~Lv~aIE~~L~~-LgVe~LvlpA~~ea~ 983 (1074)
.+.|.+++..++ ++|+...+.... ...+|+=..- .+.|+|||++...+.++.+.+-. +++.+|++-..+.-.
T Consensus 64 ~~~~~~~~~~~~~~~~iG~~~~~~~~~~~~~~~~~ig~~l-~~~~~g~G~~tea~~~~l~~~f~~~~l~ri~~~~~~~N~ 142 (187)
T COG1670 64 GGAFAIELKATGDGELIGVIGLSDIDRAANGDLAEIGYWL-DPEYWGKGYATEALRALLDYAFEELGLHRIEATVDPENE 142 (187)
T ss_pred CceEEEEEEeCCCCeEEEEEEEEEeccccccceEEEEEEE-ChHHhcCchHHHHHHHHHHHhhhhcCceEEEEEecCCCH
Confidence 455666666555 999999887544 4566665554 89999999999999999888666 999999987777644
Q ss_pred HHhhh--ccCcEEccH
Q 001460 984 HTWTR--VFGFTSLEE 997 (1074)
Q Consensus 984 ~~Wt~--kFGF~~m~~ 997 (1074)
..+.- ++||+....
T Consensus 143 ~S~rv~ek~Gf~~eg~ 158 (187)
T COG1670 143 ASIRVYEKLGFRLEGE 158 (187)
T ss_pred HHHHHHHHcCChhhhh
Confidence 43332 799987664
No 95
>KOG3397 consensus Acetyltransferases [General function prediction only]
Probab=94.36 E-value=0.066 Score=56.46 Aligned_cols=82 Identities=9% Similarity=0.129 Sum_probs=63.3
Q ss_pred eCCeEEEEEEEE-EecC-eeEEeeeeeeeccccccChhHHHHHHHHHHHhhcCceEEEEcchhhhHHHhhhccCcEEccH
Q 001460 920 RGDEIISAASIR-FHGT-QLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAIAELMHTWTRVFGFTSLEE 997 (1074)
Q Consensus 920 ~~devVsaAsiR-V~G~-~~AElPlvAT~~~yRrQGmgR~Lv~aIE~~L~~LgVe~LvlpA~~ea~~~Wt~kFGF~~m~~ 997 (1074)
-+++||+-+-+- |... +..-+-.|.+.-..||||+|++||+..|..++..|...+.|..+. -..||+ .+||+.-++
T Consensus 64 ~~~~VigH~rLS~i~n~~~al~VEsVVV~k~~RG~GFGk~lMk~~E~~~R~~gf~~~yLsT~D-Q~~FYe-~lGYe~c~P 141 (225)
T KOG3397|consen 64 ENDEVLGHSRLSHLPNRDHALWVESVVVKKDQRGLGFGKFLMKSTEKWMREKGFNEAYLSTDD-QCRFYE-SLGYEKCDP 141 (225)
T ss_pred cccceeeeeccccCCCCCceeEEEEEEEehhhccccHHHHHHHHHHHHHHHhhhhheeeeccc-chhhhh-hhcccccCc
Confidence 556777766553 3333 444566788889999999999999999999999999999987765 478999 499998877
Q ss_pred HHHHhh
Q 001460 998 SLKQEM 1003 (1074)
Q Consensus 998 ~~k~~~ 1003 (1074)
-+....
T Consensus 142 i~~~~~ 147 (225)
T KOG3397|consen 142 IVHSTT 147 (225)
T ss_pred eecccc
Confidence 444333
No 96
>PF14542 Acetyltransf_CG: GCN5-related N-acetyl-transferase; PDB: 2H5M_A 2Q44_A 1XMT_A 2Q4Y_A 2IL4_A 2EVN_A 1R57_A.
Probab=93.97 E-value=0.26 Score=45.08 Aligned_cols=57 Identities=16% Similarity=0.103 Sum_probs=47.5
Q ss_pred EEeeCCeEEEEEEEEEecCeeEEeeeeeeeccccccChhHHHHHHHHHHHhhcCceEE
Q 001460 917 ILERGDEIISAASIRFHGTQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKL 974 (1074)
Q Consensus 917 VLe~~devVsaAsiRV~G~~~AElPlvAT~~~yRrQGmgR~Lv~aIE~~L~~LgVe~L 974 (1074)
.|..+|+.++...++. ..++-.|--.-|.+++||||++..||+++.+.++.-|..-+
T Consensus 3 ~~~~~g~~~a~l~Y~~-~~~~~~i~hT~V~~~~rGqGia~~L~~~~l~~a~~~~~kv~ 59 (78)
T PF14542_consen 3 ELKDDGEEIAELTYRE-DGGVIVITHTEVPPELRGQGIAKKLVEAALDYARENGLKVV 59 (78)
T ss_dssp EEESSTTEEEEEEEEE-SSSEEEEEEEEE-CSSSTTTHHHHHHHHHHHHHHHTT-EEE
T ss_pred EEEECCEEEEEEEEEe-CCCEEEEEEEEECccccCCcHHHHHHHHHHHHHHHCCCEEE
Confidence 3566788999999987 55778888888999999999999999999999999887744
No 97
>KOG2488 consensus Acetyltransferase (GNAT) domain-containing protein [General function prediction only]
Probab=93.85 E-value=0.15 Score=54.51 Aligned_cols=84 Identities=19% Similarity=0.280 Sum_probs=64.6
Q ss_pred ceEEEEeeCCeEEEEEEEEEe---cCeeEEeeeeeeeccccccChhHHHHHHHHHHHhhcCceEEEE---cchhhhHHHh
Q 001460 913 FYTAILERGDEIISAASIRFH---GTQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLII---PAIAELMHTW 986 (1074)
Q Consensus 913 FYT~VLe~~devVsaAsiRV~---G~~~AElPlvAT~~~yRrQGmgR~Lv~aIE~~L~~LgVe~Lvl---pA~~ea~~~W 986 (1074)
-|.+..+...++|+-+++|.- |..++=.-=|-+-+.|||+|+|+.|++.+|.+..+.+.+.++| .+-.-+++|+
T Consensus 93 ~Yi~a~~~~~~~vgf~~Frf~vd~g~~vlYcyEvqv~~~yR~kGiGk~LL~~l~~~a~~~~~~kVmLTVf~~N~~al~Fy 172 (202)
T KOG2488|consen 93 RYICAWNNKSKLVGFTMFRFTVDTGDPVLYCYEVQVASAYRGKGIGKFLLDTLEKLADSRHMRKVMLTVFSENIRALGFY 172 (202)
T ss_pred eEEEEEcCCCceeeEEEEEEEcccCCeEEEEEEEeehhhhhccChHHHHHHHHHHHHHHHHhhhheeeeecccchhHHHH
Confidence 466666666689999999863 3344444445667789999999999999999998888886655 4455689999
Q ss_pred hhccCcEEccH
Q 001460 987 TRVFGFTSLEE 997 (1074)
Q Consensus 987 t~kFGF~~m~~ 997 (1074)
. .+||.+.+.
T Consensus 173 ~-~~gf~~~~~ 182 (202)
T KOG2488|consen 173 H-RLGFVVDEE 182 (202)
T ss_pred H-HcCcccCCC
Confidence 9 599988775
No 98
>COG2388 Predicted acetyltransferase [General function prediction only]
Probab=93.50 E-value=0.28 Score=47.49 Aligned_cols=73 Identities=22% Similarity=0.250 Sum_probs=60.2
Q ss_pred CcceEEEEeeCCeEEEEEEEEEecCeeEEeeeeeeeccccccChhHHHHHHHHHHHhhcCceEEEEcchhhhHHHhh
Q 001460 911 SGFYTAILERGDEIISAASIRFHGTQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAIAELMHTWT 987 (1074)
Q Consensus 911 ~GFYT~VLe~~devVsaAsiRV~G~~~AElPlvAT~~~yRrQGmgR~Lv~aIE~~L~~LgVe~LvlpA~~ea~~~Wt 987 (1074)
.++|+ +..+|+.|+.++..-.|.+..-|+=--|.+++||||+++.|+....+.++.-|.. ++|.-+-+...|.
T Consensus 15 ~~~y~--~~~~G~~~~e~~y~~~~~~~i~i~HT~V~d~lrGqGia~~L~~~al~~ar~~g~k--iiP~Csf~~a~~~ 87 (99)
T COG2388 15 NGRYV--LTDEGEVIGEATYYDRGENLIIIDHTYVPDELRGQGIAQKLVEKALEEAREAGLK--IIPLCSFAVATYF 87 (99)
T ss_pred ceEEE--EecCCcEEEEEEEecCCCCEEEEecCcCCHHHcCCcHHHHHHHHHHHHHHHcCCe--EcccchHHHHHHH
Confidence 56666 6788889999998888889999999999999999999999999999999999884 5566554444443
No 99
>KOG4144 consensus Arylalkylamine N-acetyltransferase [General function prediction only]
Probab=92.99 E-value=0.083 Score=54.89 Aligned_cols=59 Identities=17% Similarity=0.261 Sum_probs=50.0
Q ss_pred EEeeeeeeeccccccChhHHHHHH-HHHHHhhcCceEEEEcchhhhHHHhhhccCcEEccH
Q 001460 938 AEMPFIGTRHIYRRQGMCRRLFCA-LESALCSLKVEKLIIPAIAELMHTWTRVFGFTSLEE 997 (1074)
Q Consensus 938 AElPlvAT~~~yRrQGmgR~Lv~a-IE~~L~~LgVe~LvlpA~~ea~~~Wt~kFGF~~m~~ 997 (1074)
+-|-.+|+.++||.||++..|+.. |..+-.+-=|.+++|=+-..+++||. +|||..+.+
T Consensus 102 i~iHsl~Ihpa~rk~g~a~~Ll~~ylq~l~~q~i~~r~~Li~h~pLvPFYE-r~gFk~vgp 161 (190)
T KOG4144|consen 102 IHIHSLAIHPAFRKQGRAPILLWRYLQHLGSQPIVRRAALICHDPLVPFYE-RFGFKAVGP 161 (190)
T ss_pred eeEEEEEecHHHHhcCcchhHHHHHHHHhhcCccccceeeeecCCccchhH-hcCceeecc
Confidence 556678999999999999999887 55555556678899999999999999 599999987
No 100
>PF13480 Acetyltransf_6: Acetyltransferase (GNAT) domain
Probab=92.51 E-value=0.73 Score=43.54 Aligned_cols=64 Identities=17% Similarity=0.025 Sum_probs=56.0
Q ss_pred cceEEEEeeCCeEEEEEEEEEecCeeEEeeeeeeeccccccChhHHHHHHHHHHHhhcCceEEEE
Q 001460 912 GFYTAILERGDEIISAASIRFHGTQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLII 976 (1074)
Q Consensus 912 GFYT~VLe~~devVsaAsiRV~G~~~AElPlvAT~~~yRrQGmgR~Lv~aIE~~L~~LgVe~Lvl 976 (1074)
....++|..+|++||++..-+++ +.+..-++++.++|+..+.+..|+..+.+.+.+.|++.+=+
T Consensus 70 ~~~l~~~~~~g~~va~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~l~~~~i~~a~~~g~~~~d~ 133 (142)
T PF13480_consen 70 RLRLFVLYDGGEPVAFALGFRHG-GTLYYWYGGYDPEYRKYSPGRLLLWEAIRWAIERGLRYFDF 133 (142)
T ss_pred CEEEEEEEECCEEEEEEEEEEEC-CEEEEEEEEECHhhHhCCHHHHHHHHHHHHHHHCCCCEEEE
Confidence 35667778899999999876666 57889999999999999999999999999999999988764
No 101
>KOG3138 consensus Predicted N-acetyltransferase [General function prediction only]
Probab=91.66 E-value=0.25 Score=52.63 Aligned_cols=60 Identities=13% Similarity=0.246 Sum_probs=49.9
Q ss_pred eEEeeeeeeeccccccChhHHHHHHHHHHHhhcC-ceEEEE---cchhhhHHHhhhccCcEEccH
Q 001460 937 LAEMPFIGTRHIYRRQGMCRRLFCALESALCSLK-VEKLII---PAIAELMHTWTRVFGFTSLEE 997 (1074)
Q Consensus 937 ~AElPlvAT~~~yRrQGmgR~Lv~aIE~~L~~Lg-Ve~Lvl---pA~~ea~~~Wt~kFGF~~m~~ 997 (1074)
+.-+-.++|.+.||..|+|+.|++.+.+.....+ +.++.+ -+-.+|+.+|+ ++||..+..
T Consensus 89 ~~yi~~Lgvl~~yR~~gIGs~Ll~~~~~~~~~~~~~~~v~lHv~~~n~~ai~~Y~-~~gF~~~~~ 152 (187)
T KOG3138|consen 89 VIYILSLGVLPRYRNKGIGSKLLEFVKKYCSEAHQCRRVYLHVQAVNESAIEFYE-KRGFEIVER 152 (187)
T ss_pred eeEEEeecccHHHHhcchHHHHHHHHHHHHhcccccceEEEEEEeCCCcHHHHHH-hcCceEeec
Confidence 5778889999999999999999999999999998 444433 33357889999 699999864
No 102
>COG4552 Eis Predicted acetyltransferase involved in intracellular survival and related acetyltransferases [General function prediction only]
Probab=89.30 E-value=0.58 Score=54.14 Aligned_cols=85 Identities=16% Similarity=0.249 Sum_probs=62.1
Q ss_pred cccCcceEEEEeeCCeEEEEEEEE----EecC---eeEEeeeeeeeccccccChhHHHHHHHHHHHhhcCceEEEEcchh
Q 001460 908 LNYSGFYTAILERGDEIISAASIR----FHGT---QLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAIA 980 (1074)
Q Consensus 908 ldF~GFYT~VLe~~devVsaAsiR----V~G~---~~AElPlvAT~~~yRrQGmgR~Lv~aIE~~L~~LgVe~LvlpA~~ 980 (1074)
+++.++|. +..+.++++-..+- -+|. ..|-|-.||+-|+|||+|+-|.|+....+..+.-|+.-.+|-+..
T Consensus 36 l~~~n~~v--i~~nqkl~s~L~i~~f~~~f~~q~l~t~GIa~Vas~P~~R~~G~~~~Ll~~sLre~~~kG~p~s~L~P~s 113 (389)
T COG4552 36 LAEPNSYV--IYMNQKLASRLHIPPFIFWFGNQVLPTAGIAGVASAPTYRRRGALRALLAHSLREIARKGYPVSALHPFS 113 (389)
T ss_pred ccCCcceE--EeehhhhhhcccccchheeeCCeeeeccceEEEEechhhccCcHHHHHHHHHHHHHHHcCCeeEEeccCc
Confidence 44555553 44566665432221 1143 456778899999999999999999999999999999998876554
Q ss_pred hhHHHhhhccCcEEccH
Q 001460 981 ELMHTWTRVFGFTSLEE 997 (1074)
Q Consensus 981 ea~~~Wt~kFGF~~m~~ 997 (1074)
..+|. ||||..-+.
T Consensus 114 --~~iYr-KfGye~asn 127 (389)
T COG4552 114 --GGIYR-KFGYEYASN 127 (389)
T ss_pred --hhhHh-hccccccce
Confidence 56888 799987654
No 103
>KOG3234 consensus Acetyltransferase, (GNAT) family [General function prediction only]
Probab=89.17 E-value=0.37 Score=50.39 Aligned_cols=56 Identities=14% Similarity=0.204 Sum_probs=44.3
Q ss_pred EEeeeeeeeccccccChhHHHHHHHHHHHhhcCceE---EEEcchhhhHHHhhhccCcEE
Q 001460 938 AEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEK---LIIPAIAELMHTWTRVFGFTS 994 (1074)
Q Consensus 938 AElPlvAT~~~yRrQGmgR~Lv~aIE~~L~~LgVe~---LvlpA~~ea~~~Wt~kFGF~~ 994 (1074)
+-+--+++.|+||++|++..||+.||+....-+.=. +|.-.-.-|+.+|+ +|||++
T Consensus 70 ~HvTAltVap~~Rrl~la~~lm~~led~~d~~~a~fvDLfVr~sN~iAI~mYk-kLGY~~ 128 (173)
T KOG3234|consen 70 GHVTALTVAPDYRRLGLAAKLMDTLEDVSDVDNAYFVDLFVRVSNQIAIDMYK-KLGYSV 128 (173)
T ss_pred eEEEEEEechhHHHHHHHHHHHHHHHHHHHhhhhheeeeeeeccchhHHHHHH-hcCceE
Confidence 344557899999999999999999999988775444 44444456999999 699975
No 104
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
Probab=87.69 E-value=0.26 Score=54.58 Aligned_cols=36 Identities=17% Similarity=0.536 Sum_probs=27.7
Q ss_pred cccccCC--cch-hhhhhhccccccccccCCCCCccceeCCcchhh
Q 001460 781 SALLPCA--MCE-KKYHKLCMQEMDALSDNLTGLVTSFCGRKCQEL 823 (1074)
Q Consensus 781 ~~Ll~Cd--QCe-r~YHv~CL~~~d~~p~~~~p~~~WFCs~~CkeI 823 (1074)
+.|+-|| -|+ .|||..|+.- ...|.+.||| .+|+.+
T Consensus 232 GqMVaCDn~nCkrEWFH~~CVGL------k~pPKG~WYC-~eCk~~ 270 (271)
T COG5034 232 GQMVACDNANCKREWFHLECVGL------KEPPKGKWYC-PECKKA 270 (271)
T ss_pred ccceecCCCCCchhheecccccc------CCCCCCcEeC-HHhHhc
Confidence 4689997 588 6899999872 3457799999 689763
No 105
>KOG3235 consensus Subunit of the major N alpha-acetyltransferase [General function prediction only]
Probab=85.49 E-value=2.7 Score=44.38 Aligned_cols=83 Identities=13% Similarity=0.286 Sum_probs=62.4
Q ss_pred EEe-eCCeEEEEEEEEEecC-----eeEEeeeeeeeccccccChhHHHHHHHH-HHHhhcCceEEEEcchh---hhHHHh
Q 001460 917 ILE-RGDEIISAASIRFHGT-----QLAEMPFIGTRHIYRRQGMCRRLFCALE-SALCSLKVEKLIIPAIA---ELMHTW 986 (1074)
Q Consensus 917 VLe-~~devVsaAsiRV~G~-----~~AElPlvAT~~~yRrQGmgR~Lv~aIE-~~L~~LgVe~LvlpA~~---ea~~~W 986 (1074)
|.+ .+|.||+-.....+.. .-..|-.+|+.-.|||.|+++.||+.-. .++...+.+++-|-.+. .|+.+|
T Consensus 45 VA~D~~gkiVGYvlAkmee~p~~~~~hGhItSlaV~rs~RrlGla~kLm~qa~rAm~E~~~A~yvsLHVR~SNraAl~LY 124 (193)
T KOG3235|consen 45 VAEDENGKIVGYVLAKMEEDPDDEPPHGHITSLAVKRSYRRLGLAQKLMNQASRAMVEVYEAKYVSLHVRKSNRAALHLY 124 (193)
T ss_pred EEEcCCCcEEEEeeeehhhcccCCCCCCeeEEeeehhhHHHhhHHHHHHHHHHHHHHHhhcceEEEEeeecccHHHHHhh
Confidence 444 7789998776655441 1345778999999999999999998644 45556677777776664 689999
Q ss_pred hhccCcEEccHHH
Q 001460 987 TRVFGFTSLEESL 999 (1074)
Q Consensus 987 t~kFGF~~m~~~~ 999 (1074)
++.+||.+.+-+-
T Consensus 125 ~~tl~F~v~eve~ 137 (193)
T KOG3235|consen 125 KNTLGFVVCEVEP 137 (193)
T ss_pred hhccceEEeeccc
Confidence 9999999987543
No 106
>PF01429 MBD: Methyl-CpG binding domain; InterPro: IPR001739 Methylation at CpG dinucleotide, the most common DNA modification in eukaryotes, has been correlated with gene silencing associated with various phenomena such as genomic imprinting, transposon and chromosome X inactivation, differentiation, and cancer. Effects of DNA methylation are mediated through proteins which bind to symmetrically methylated CpGs. Such proteins contain a specific domain of ~70 residues, the methyl-CpG-binding domain (MBD), which is linked to additional domains associated with chromatin, such as the bromodomain, the AT hook motif,the SET domain, or the PHD finger. MBD-containing proteins appear to act as structural proteins, which recruit a variety of histone deacetylase (HDAC) complexes and chromatin remodelling factors, leading to chromatin compaction and, consequently, to transcriptional repression. The MBD of MeCP2, MBD1, MBD2, MBD4 and BAZ2 mediates binding to DNA, in case of MeCP2, MBD1 and MBD2 preferentially to methylated CpG. In case of human MBD3 and SETDB1 the MBD has been shown to mediate protein-protein interactions [, ]. The MBD folds into an alpha/beta sandwich structure comprising a layer of twisted beta sheet, backed by another layer formed by the alpha1 helix and a hairpin loop at the C terminus. These layers are both amphipathic, with the alpha1 helix and the beta sheet lying parallel and the hydrophobic faces tightly packed against each other. The beta sheet is composed of two long inner strands (beta2 and beta3) sandwiched by two shorter outer strands (beta1 and beta4) [].; GO: 0003677 DNA binding, 0005634 nucleus; PDB: 2KY8_A 1UB1_A 1D9N_A 1IG4_A 1QK9_A 3C2I_A.
Probab=83.85 E-value=1 Score=41.37 Aligned_cols=40 Identities=25% Similarity=0.414 Sum_probs=32.3
Q ss_pred HhcCeeeeeccCCC---CCcccceeeCCCCceeeehHHHHHHH
Q 001460 404 VEAGWTIDYRPRKN---RDYLDAVYINPTGTAYWSIIKAYDAL 443 (1074)
Q Consensus 404 ~~agw~id~rpr~~---r~y~d~vy~~p~g~~~wsi~~ay~~~ 443 (1074)
|-.||+...+.|.+ ..-.|..|++|.|+.+-|...-...|
T Consensus 11 Lp~GW~re~~~R~~g~~~~~~dv~Y~sP~Gk~~RS~~eV~~yL 53 (77)
T PF01429_consen 11 LPDGWKREVVVRKSGSSAGKKDVYYYSPCGKRFRSKKEVVRYL 53 (77)
T ss_dssp STTT-EEEEEESSSSTTTTSEEEEEEETTSEEESSHHHHHHHH
T ss_pred CCCCCEEEEEEecCCCcCCceEEEEECCCCCEEeCHHHHHHHH
Confidence 56799999998884 35799999999999999987765555
No 107
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=83.40 E-value=0.93 Score=53.75 Aligned_cols=66 Identities=23% Similarity=0.473 Sum_probs=42.9
Q ss_pred CCCCCCccccccCCCCCCCCCCCCCCCcccccCCcchhhhhhhcccccccc---ccCCC---CCccceeCCcchhhHH
Q 001460 754 DWHCPNCTCKFCGLAGEDDAEGDDTTTSALLPCAMCEKKYHKLCMQEMDAL---SDNLT---GLVTSFCGRKCQELSE 825 (1074)
Q Consensus 754 ~W~Cp~C~C~~Cg~~~~d~~eed~~s~~~Ll~CdQCer~YHv~CL~~~d~~---p~~~~---p~~~WFCs~~CkeI~e 825 (1074)
+=||..|.|.+|.+... . .+....+.|+.|.++.|..|--....+ +.... ...--|+|..|....+
T Consensus 123 ~gFC~~C~C~iC~kfD~--~----~n~~~Wi~Cd~CgH~cH~dCALr~~~i~~G~s~~g~~g~~d~~f~C~~C~~~se 194 (446)
T PF07227_consen 123 PGFCRRCMCCICSKFDD--N----KNTCSWIGCDVCGHWCHLDCALRHELIGTGPSVKGSIGTLDMQFHCRACGKTSE 194 (446)
T ss_pred CCccccCCccccCCccc--C----CCCeeEEeccCCCceehhhhhcccccccCCccCCCCCccCceEEEccCCCChhh
Confidence 35899999999987432 2 234557999999999999994432211 11111 1244677889986543
No 108
>PF06852 DUF1248: Protein of unknown function (DUF1248); InterPro: IPR009658 This entry represents a conserved region within a number of proteins of unknown function that seem to be specific to Caenorhabditis elegans. Note that some proteins in the entry contain more than one copy of this region.
Probab=83.22 E-value=5.8 Score=42.34 Aligned_cols=84 Identities=19% Similarity=0.325 Sum_probs=58.3
Q ss_pred ceEEEEeeCCeEEEEEEE-EEec------CeeEEeeeeeeeccccccChhHHHHHHHHHHHhhcCceEEEEcchhhhHHH
Q 001460 913 FYTAILERGDEIISAASI-RFHG------TQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAIAELMHT 985 (1074)
Q Consensus 913 FYT~VLe~~devVsaAsi-RV~G------~~~AElPlvAT~~~yRrQGmgR~Lv~aIE~~L~~LgVe~LvlpA~~ea~~~ 985 (1074)
||.++|.-.+.||+.+++ +.+. ..+-=+=+.=+.|+|||.|+++.+...+-+.+... =...++.+...+..+
T Consensus 47 l~~~~~KgT~~via~~~~~~~~~l~~~~d~pl~~~G~~w~~p~yRg~~~~kl~~~~~~~~~~~~-~~N~~~~~~~~~~~~ 125 (181)
T PF06852_consen 47 LVLTCLKGTDRVIATVHLIRFDPLNPSPDKPLQFIGFFWIDPEYRGKGIMKLQDDICMDELDSV-DDNSVAQGNVKMSNF 125 (181)
T ss_pred EEEEEEcCCCcEEEEEEEEEeccCCCCCCCCeEEEeeeeeCCcccCcchHHHHHHHHHHHhccC-CCceeeecCHHHHHH
Confidence 466666666778876665 3332 13555556668999999999974444444555553 344666788899999
Q ss_pred hhhccCcEEccH
Q 001460 986 WTRVFGFTSLEE 997 (1074)
Q Consensus 986 Wt~kFGF~~m~~ 997 (1074)
|..-|||..+..
T Consensus 126 w~k~~G~~~~~h 137 (181)
T PF06852_consen 126 WHKMFGFDDYGH 137 (181)
T ss_pred HHHHhCCCCCcc
Confidence 999999877766
No 109
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=82.73 E-value=0.7 Score=59.73 Aligned_cols=36 Identities=19% Similarity=0.514 Sum_probs=27.7
Q ss_pred CcccccCCcchhhhhhhccccccccccCCCCCccceeCCcchh
Q 001460 780 TSALLPCAMCEKKYHKLCMQEMDALSDNLTGLVTSFCGRKCQE 822 (1074)
Q Consensus 780 ~~~Ll~CdQCer~YHv~CL~~~d~~p~~~~p~~~WFCs~~Cke 822 (1074)
.+.+++||-|..++|+.|+.- + ..+++.|+| ..|..
T Consensus 233 ~n~ivfCD~Cnl~VHq~Cygi----~--~ipeg~WlC-r~Cl~ 268 (1051)
T KOG0955|consen 233 SNVIVFCDGCNLAVHQECYGI----P--FIPEGQWLC-RRCLQ 268 (1051)
T ss_pred CceEEEcCCCcchhhhhccCC----C--CCCCCcEee-hhhcc
Confidence 356899999999999999972 1 236789998 56643
No 110
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=81.79 E-value=0.69 Score=61.60 Aligned_cols=50 Identities=22% Similarity=0.549 Sum_probs=37.5
Q ss_pred ccccCCCCCCCCCCCCCCCcccccCCcchhhhhhhccccccccccCCCCCccceeCCcchhhHH
Q 001460 762 CKFCGLAGEDDAEGDDTTTSALLPCAMCEKKYHKLCMQEMDALSDNLTGLVTSFCGRKCQELSE 825 (1074)
Q Consensus 762 C~~Cg~~~~d~~eed~~s~~~Ll~CdQCer~YHv~CL~~~d~~p~~~~p~~~WFCs~~CkeI~e 825 (1074)
|..|.....+ ..++.|+.|..+||..|+.+. ....+.+.|+|+ .|..-..
T Consensus 1111 c~~cr~k~~~---------~~m~lc~~c~~~~h~~C~rp~----~~~~~~~dW~C~-~c~~e~~ 1160 (1404)
T KOG1245|consen 1111 CKVCRRKKQD---------EKMLLCDECLSGFHLFCLRPA----LSSVPPGDWMCP-SCRKEHR 1160 (1404)
T ss_pred hhhhhhcccc---------hhhhhhHhhhhhHHHHhhhhh----hccCCcCCccCC-ccchhhh
Confidence 7888766543 348999999999999999862 334566889996 7776554
No 111
>COG1243 ELP3 Histone acetyltransferase [Transcription / Chromatin structure and dynamics]
Probab=81.47 E-value=1.3 Score=52.87 Aligned_cols=63 Identities=14% Similarity=0.230 Sum_probs=50.2
Q ss_pred EEEecCeeEEeeeeeeeccccccChhHHHHHHHHHHHhhcCceEEEEcchhhhHHHhhhccCcEEcc
Q 001460 930 IRFHGTQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAIAELMHTWTRVFGFTSLE 996 (1074)
Q Consensus 930 iRV~G~~~AElPlvAT~~~yRrQGmgR~Lv~aIE~~L~~LgVe~LvlpA~~ea~~~Wt~kFGF~~m~ 996 (1074)
++|+|. ++|.=-....+|.||||+.||+..|+.++.-+.+++.+=+---+..-|. ||||...-
T Consensus 446 lhvyg~---~vpig~~~~~~QH~G~G~~L~~~AE~ia~ee~~~ki~viSgiG~ReYy~-k~GY~~~g 508 (515)
T COG1243 446 LHVYGS---EVPIGKREDEWQHRGYGRELLEEAERIAREEGAKKILVISGIGVREYYR-KLGYELDG 508 (515)
T ss_pred hhcccc---ccccccCcchhhcccHHHHHHHHHHHHHHhhccccEEEEecccHHHHHH-HhCccccC
Confidence 457774 3444333588999999999999999999999999987777777778888 79998654
No 112
>cd01396 MeCP2_MBD MeCP2, MBD1, MBD2, MBD3, and MBD4 are members of a protein family that share the methyl-CpG-binding domain (MBD). The MBD, consists of about 70 residues and is defined as the minimal region required for binding to methylated DNA by a methyl-CpG-binding protein which binds specifically to methylated DNA. The MBD can recognize a single symmetrically methylated CpG either as naked DNA or within chromatin. MeCP2, MBD1 and MBD2 (and likely MBD3) form complexes with histone deacetylase and are involved in histone deacetylase-dependent repression of transcription. MBD4 is an endonuclease that forms a complex with the DNA mismatch-repair protein MLH1.
Probab=80.64 E-value=2.2 Score=39.62 Aligned_cols=57 Identities=26% Similarity=0.499 Sum_probs=40.6
Q ss_pred HhcCeeeeeccCCC--CCcccceeeCCCCceeeehHHHHHHHHHHhccccccCCCCCCCCCCCC
Q 001460 404 VEAGWTIDYRPRKN--RDYLDAVYINPTGTAYWSIIKAYDALTKQLNDEEDEAKPSADGSPFTP 465 (1074)
Q Consensus 404 ~~agw~id~rpr~~--r~y~d~vy~~p~g~~~wsi~~ay~~~~~~~~~~~~~~k~~~~~~~~~~ 465 (1074)
|-.||+....+|++ .-..|..||+|.|+.+=|.... .+.|++.. ..-.....|.|++
T Consensus 7 lp~GW~r~~~~R~~gs~~k~DvyY~sP~Gkk~RS~~ev----~~yL~~~~-~~~~~~~~FdF~~ 65 (77)
T cd01396 7 LPPGWKRELVPRKSGSAGKFDVYYISPTGKKFRSKVEL----ARYLEKNG-PTSLDLSDFDFTV 65 (77)
T ss_pred CCCCCEEEEEEecCCCCCcceEEEECCCCCEEECHHHH----HHHHHhCC-CCCCcHhHcccCC
Confidence 56899999999998 8899999999999988776544 34444432 1223334566654
No 113
>COG3981 Predicted acetyltransferase [General function prediction only]
Probab=80.46 E-value=2.9 Score=44.37 Aligned_cols=68 Identities=16% Similarity=0.171 Sum_probs=54.7
Q ss_pred ceEEEEeeCCeEEEEEEEEEecCeeEEee-----eeeeeccccccChhHHHHHHHHHHHhhcCceEEEEcchhhh
Q 001460 913 FYTAILERGDEIISAASIRFHGTQLAEMP-----FIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAIAEL 982 (1074)
Q Consensus 913 FYT~VLe~~devVsaAsiRV~G~~~AElP-----lvAT~~~yRrQGmgR~Lv~aIE~~L~~LgVe~LvlpA~~ea 982 (1074)
.|-+|-+ ++++|+...||-.=. -..++ --+++|.-||+||++.++.-..+.++.||+..+.+.+..+-
T Consensus 70 ~y~~v~~-d~~ivG~i~lRh~Ln-~~ll~~gGHIGY~VrPseR~KGYA~emLkl~L~~ar~lgi~~Vlvtcd~dN 142 (174)
T COG3981 70 TYWAVDE-DGQIVGFINLRHQLN-DFLLEEGGHIGYSVRPSERRKGYAKEMLKLALEKARELGIKKVLVTCDKDN 142 (174)
T ss_pred eEEEEec-CCcEEEEEEeeeecc-hHHHhcCCcccceeChhhhccCHHHHHHHHHHHHHHHcCCCeEEEEeCCCC
Confidence 4555656 899999999995432 23333 24699999999999999999999999999999998887654
No 114
>KOG1081 consensus Transcription factor NSD1 and related SET domain proteins [Transcription]
Probab=77.84 E-value=1.8 Score=51.95 Aligned_cols=45 Identities=27% Similarity=0.605 Sum_probs=32.3
Q ss_pred CccccccccccCCCCcEecCCCCCcCCCCCCCCcCCCCCCCCCCCc
Q 001460 715 DPNDDTCGICGDGGDLICCDGCPSTFHQSCLDIQMLPPGDWHCPNC 760 (1074)
Q Consensus 715 d~ndd~C~VCgdGGdLLcCD~CprafH~~CL~p~~vP~g~W~Cp~C 760 (1074)
..+.++|.+|.++|.+++|+.|..++|-.|.... .|...|.|..|
T Consensus 86 ~~~~~~c~vc~~ggs~v~~~s~~~~~~r~c~~~~-~~~c~~~~~d~ 130 (463)
T KOG1081|consen 86 KIEPSECFVCFKGGSLVTCKSRIQAPHRKCKPAQ-LEKCSKRCTDC 130 (463)
T ss_pred CCCcchhccccCCCccceeccccccccccCcCcc-CcccccCCcce
Confidence 3456899999999999999987777777777542 34444544444
No 115
>KOG0954 consensus PHD finger protein [General function prediction only]
Probab=77.34 E-value=1.3 Score=54.92 Aligned_cols=47 Identities=17% Similarity=0.491 Sum_probs=32.5
Q ss_pred ccccCCCCCCCCCCCCCCCcccccCCcchhhhhhhccccccccccCCCCCccceeCCcchh
Q 001460 762 CKFCGLAGEDDAEGDDTTTSALLPCAMCEKKYHKLCMQEMDALSDNLTGLVTSFCGRKCQE 822 (1074)
Q Consensus 762 C~~Cg~~~~d~~eed~~s~~~Ll~CdQCer~YHv~CL~~~d~~p~~~~p~~~WFCs~~Cke 822 (1074)
|.+|..+..+. ...|++|+.|.-..|..|+.-. ..|.++|.|. .|..
T Consensus 274 CDvCrspD~e~-------~neMVfCd~Cn~cVHqaCyGIl------e~p~gpWlCr-~Cal 320 (893)
T KOG0954|consen 274 CDVCRSPDSEE-------ANEMVFCDKCNICVHQACYGIL------EVPEGPWLCR-TCAL 320 (893)
T ss_pred eceecCCCccc-------cceeEEeccchhHHHHhhhcee------ecCCCCeeeh-hccc
Confidence 55665554322 2469999999999999998732 2366899984 5543
No 116
>TIGR03694 exosort_acyl putative PEP-CTERM/exosortase system-associated acyltransferase. Members of this protein family are restricted to bacterial species with the PEP-CTERM/exosortase system predicted to act in exopolysaccharide-associated protein targeting. PSI-BLAST and CDD reveal relationships to the acyltransferase family that includes N-acyl-L-homoserine lactone synthetase. Several members of this family may be found in a single genome. These proteins likely contribute to chemical modifications in exopolysaccharide and biofilm structural material production.
Probab=76.94 E-value=15 Score=40.36 Aligned_cols=93 Identities=13% Similarity=0.199 Sum_probs=69.6
Q ss_pred CCCCcccccCcceEEEEe-eCCeEEEEEEEEEe------------------------------cCeeEEeeeeeeecccc
Q 001460 902 GSNFNRLNYSGFYTAILE-RGDEIISAASIRFH------------------------------GTQLAEMPFIGTRHIYR 950 (1074)
Q Consensus 902 GSnFkRldF~GFYT~VLe-~~devVsaAsiRV~------------------------------G~~~AElPlvAT~~~yR 950 (1074)
|-++..+|-.-.|.+|.. .++++||++-|--. +..++|+==+|+.++||
T Consensus 45 ~~E~D~~D~~~~h~l~~~~~~g~vvG~~RLl~t~~~~p~~~~p~e~~~~~~~~~~~~~~~~~~~~~i~E~SRf~V~~~~r 124 (241)
T TIGR03694 45 GLETDEYDAHSVHSLLRHRRTGTFVGCVRLVLPNSSDPDQPFPFEKHCSHSLDGLFLDPRRLPRSRIAEVSRLAVSKDFR 124 (241)
T ss_pred CCcCCCCCCCCcEEEEEECCCCCEEEEEEEeccccccccccccHHHHhccccchhhcCccccCCCceEEeehheECHhHh
Confidence 445666676666766664 45889887766421 13588888899999999
Q ss_pred cc--------C--------------------hhHHHHHHHHHHHhhcCceEEEEcchhhhHHHhhhccCcEEc
Q 001460 951 RQ--------G--------------------MCRRLFCALESALCSLKVEKLIIPAIAELMHTWTRVFGFTSL 995 (1074)
Q Consensus 951 rQ--------G--------------------mgR~Lv~aIE~~L~~LgVe~LvlpA~~ea~~~Wt~kFGF~~m 995 (1074)
+. | +...|+.++-+.....||++++.-+.+.+..++. ++||..-
T Consensus 125 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~a~~~Gi~~~~~v~~~~l~r~l~-r~G~~~~ 196 (241)
T TIGR03694 125 RRKGEKLKPSGVGVIETEAPFSESERRRFPHIPLGLYLGLIALSSANGITHWYAIMEPRLARLLS-RFGIQFR 196 (241)
T ss_pred CCcccccccccccccccccccchhhcccCchHHHHHHHHHHHHHHHCCCcEEEEEeCHHHHHHHH-HhCCceE
Confidence 74 2 3467999999999999999999888887777776 6887653
No 117
>cd04264 DUF619-NAGS DUF619 domain of various N-acetylglutamate Synthases of the fungal arginine-biosynthetic pathway and urea cycle found in humans and fish. DUF619-NAGS: This family includes the DUF619 domain of various N-acetylglutamate synthases (NAGS) of the urea cycle found in humans and fish, the DUF619 domain of the NAGS of the fungal arginine-biosynthetic pathway (FABP), as well as the DUF619 domain present in C-terminal of a NAG kinase-like domain in a limited number of predicted NAGSs found in bacteria and Dictyostelium. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate. NAGS is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Domain architecture of ureogenic and fungal NAGS consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. The DUF619 domain function has yet to be characterized.
Probab=76.91 E-value=5.4 Score=38.69 Aligned_cols=52 Identities=13% Similarity=0.218 Sum_probs=40.8
Q ss_pred ceEEEEeeCCeEEEEEEEEEec--CeeEEeeeeeeeccccccChhHHHHHHHHHHH
Q 001460 913 FYTAILERGDEIISAASIRFHG--TQLAEMPFIGTRHIYRRQGMCRRLFCALESAL 966 (1074)
Q Consensus 913 FYT~VLe~~devVsaAsiRV~G--~~~AElPlvAT~~~yRrQGmgR~Lv~aIE~~L 966 (1074)
.+++++ ++...+||.+.--+ ..++-|=.+|+.+..|++|+++.|+++|-+..
T Consensus 10 ~~~~y~--~e~y~~~aIvt~~~~~~~~~yLdKfaV~~~~~g~gvad~vf~~i~~d~ 63 (99)
T cd04264 10 LHAIYL--SEGYNAAAIVTYEGVNNGVPYLDKFAVSSSAQGEGTSDALWRRLRRDF 63 (99)
T ss_pred ceEEEE--eCCceEEEEEeccCCCCCceEEEEEEEchhhhhcChHHHHHHHHHhhC
Confidence 444443 45577777775433 48999999999999999999999999998773
No 118
>PF01342 SAND: SAND domain; InterPro: IPR000770 The SAND domain (named after Sp100, AIRE-1, NucP41/75, DEAF-1) is a conserved ~80 residue region found in a number of nuclear proteins, many of which function in chromatin-dependent transcriptional control. These include proteins linked to various human diseases, such as the Sp100 (Speckled protein 100 kDa), NUDR (Nuclear DEAF-1 related), GMEB (Glucocorticoid Modulatory Element Binding) proteins and AIRE-1 (Autoimmune regulator 1) proteins. Proteins containing the SAND domain have a modular structure; the SAND domain can be associated with a number of other modules, including the bromodomain, the PHD finger and the MYND finger. Because no SAND domain has been found in yeast, it is thought that the SAND domain could be restricted to animal phyla. Many SAND domain-containing proteins, including NUDR, DEAF-1 (Deformed epidermal autoregulatory factor-1) and GMEB, have been shown to bind DNA sequences specifically. The SAND domain has been proposed to mediate the DNA binding activity of these proteins [, ]. The resolution of the 3D structure of the SAND domain from Sp100b has revealed that it consists of a novel alpha/beta fold. The SAND domain adopts a compact fold consisting of a strongly twisted, five-stranded antiparallel beta-sheet with four alpha-helices packing against one side of the beta-sheet. The opposite side of the beta-sheet is solvent exposed. The beta-sheet and alpha-helical parts of the structure form two distinct regions. Multiple hydrophobic residues pack between these regions to form a structural core. A conserved KDWK sequence motif is found within the alpha-helical, positively charged surface patch. The DNA binding surface has been mapped to the alpha-helical region encompassing the KDWK motif [].; GO: 0003677 DNA binding, 0005634 nucleus; PDB: 1OQJ_B 1UFN_A 1H5P_A.
Probab=74.05 E-value=0.78 Score=42.97 Aligned_cols=37 Identities=30% Similarity=0.500 Sum_probs=28.0
Q ss_pred eeeCCCCceeecceeeeccCCccccCc-eeEeccCCcchhh
Q 001460 650 IHCGCCSKILTVSKFEIHAGSKLRQPF-QNIYLDSGVSLLQ 689 (1074)
Q Consensus 650 I~C~CC~kvfS~SeFE~HAG~k~r~Py-~nI~L~~G~SLld 689 (1074)
|.|. +.+|||++||.|+|....+.| .+|++ +|.+|-.
T Consensus 37 I~~~--g~~~TP~eFE~~~G~~~sK~WK~SIr~-~g~~L~~ 74 (82)
T PF01342_consen 37 IQCE--GRWFTPSEFERHGGKGSSKDWKRSIRC-GGEPLGK 74 (82)
T ss_dssp EEET--TEEE-HHHHHHHHTTCTCS-HHHHSEE-TTEEHHH
T ss_pred EeeC--CcEECHHHHHhhcCcccCCCCCccEEE-CCEEHHH
Confidence 4444 789999999999999988888 66766 7888764
No 119
>COG5141 PHD zinc finger-containing protein [General function prediction only]
Probab=73.52 E-value=1.4 Score=52.53 Aligned_cols=32 Identities=22% Similarity=0.330 Sum_probs=24.4
Q ss_pred CCcccccCCcchhhhhhhccccccccccCCCCCcccee
Q 001460 779 TTSALLPCAMCEKKYHKLCMQEMDALSDNLTGLVTSFC 816 (1074)
Q Consensus 779 s~~~Ll~CdQCer~YHv~CL~~~d~~p~~~~p~~~WFC 816 (1074)
+.+.+++|+-|+-..|+.|+.-. + .|++.|+|
T Consensus 206 N~naiVfCdgC~i~VHq~CYGI~-f-----~peG~WlC 237 (669)
T COG5141 206 NSNAIVFCDGCEICVHQSCYGIQ-F-----LPEGFWLC 237 (669)
T ss_pred CcceEEEecCcchhhhhhcccce-e-----cCcchhhh
Confidence 34679999999999999998731 1 25577886
No 120
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=73.13 E-value=1.3 Score=54.56 Aligned_cols=37 Identities=27% Similarity=0.597 Sum_probs=28.6
Q ss_pred CCcccccCC--cchhhhhhhccccccccccCCCCCccceeCCcchh
Q 001460 779 TTSALLPCA--MCEKKYHKLCMQEMDALSDNLTGLVTSFCGRKCQE 822 (1074)
Q Consensus 779 s~~~Ll~Cd--QCer~YHv~CL~~~d~~p~~~~p~~~WFCs~~Cke 822 (1074)
..+.+++|| -|.-+.|+.|+.-. ..|.++||| +.|..
T Consensus 18 aeNPLVYCDG~nCsVAVHQaCYGIv------qVPtGpWfC-rKCes 56 (900)
T KOG0956|consen 18 AENPLVYCDGHNCSVAVHQACYGIV------QVPTGPWFC-RKCES 56 (900)
T ss_pred ccCceeeecCCCceeeeehhcceeE------ecCCCchhh-hhhhh
Confidence 335799997 69999999998742 246799998 67754
No 121
>PF01233 NMT: Myristoyl-CoA:protein N-myristoyltransferase, N-terminal domain; InterPro: IPR022676 Myristoyl-CoA:protein N-myristoyltransferase (2.3.1.97 from EC) (Nmt) [] is the enzyme responsible for transferring a myristate group on the N-terminal glycine of a number of cellular eukaryotics and viral proteins. Nmt is a monomeric protein of about 50 to 60kDa whose sequence appears to be well conserved. The N and C-terminal domains of NMT are structurally similar, each adopting an acyl-CoA N-acyltransferase-like fold. This entry represents the N-terminal region. ; GO: 0004379 glycylpeptide N-tetradecanoyltransferase activity; PDB: 2P6G_B 2P6F_F 2P6E_A 1IIC_A 1IID_A 2NMT_A 4A33_A 3H5Z_A 4A2Z_A 2WSA_A ....
Probab=72.48 E-value=19 Score=38.06 Aligned_cols=66 Identities=11% Similarity=0.202 Sum_probs=52.3
Q ss_pred cccCcceEEEEee--CCeEEE-----EEEEEEecC--eeEEeeeeeeeccccccChhHHHHHHHHHHHhhcCceE
Q 001460 908 LNYSGFYTAILER--GDEIIS-----AASIRFHGT--QLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEK 973 (1074)
Q Consensus 908 ldF~GFYT~VLe~--~devVs-----aAsiRV~G~--~~AElPlvAT~~~yRrQGmgR~Lv~aIE~~L~~LgVe~ 973 (1074)
=.|.-.|.+-++. ++++|| -+.|||++. .++||=|+-+...+|.+++.=.|+.+|-+.+...||=.
T Consensus 72 Pg~~~~whiGVR~~~~~kLvgfIsaip~~irv~~~~~~~~eINFLCVhKklRskrlAPvLIkEItRRvn~~gI~q 146 (162)
T PF01233_consen 72 PGWKKEWHIGVRVKSSKKLVGFISAIPATIRVRDKVIKMVEINFLCVHKKLRSKRLAPVLIKEITRRVNLQGIWQ 146 (162)
T ss_dssp TT--GGGEEEEEETTTTEEEEEEEEEEEEEEETTEEEEEEEEEEEEE-GGGTTSSHHHHHHHHHHHHHHTTT--E
T ss_pred cCCccceEEEEEECCCCEEEEEEccceEEEEEeeeEeeeeeEEEEeecHhHhhcCCcHHHHHHHHHHhhhcCcee
Confidence 3456667777764 688888 568999888 89999999999999999999999999999988888644
No 122
>cd00122 MBD MeCP2, MBD1, MBD2, MBD3, MBD4, CLLD8-like, and BAZ2A-like proteins constitute a family of proteins that share the methyl-CpG-binding domain (MBD). The MBD consists of about 70 residues and is defined as the minimal region required for binding to methylated DNA by a methyl-CpG-binding protein which binds specifically to methylated DNA. The MBD can recognize a single symmetrically methylated CpG either as naked DNA or within chromatin. MeCP2, MBD1 and MBD2 (and likely MBD3) form complexes with histone deacetylase and are involved in histone deacetylase-dependent repression of transcription. MBD4 is an endonuclease that forms a complex with the DNA mismatch-repair protein MLH1. The MBDs present in putative chromatin remodelling subunit, BAZ2A, and putative histone methyltransferase, CLLD8, represent two phylogenetically distinct groups within the MBD protein family.
Probab=71.78 E-value=5.9 Score=34.97 Aligned_cols=41 Identities=24% Similarity=0.339 Sum_probs=33.6
Q ss_pred HhcCeeeeeccCCC--CCcccceeeCCCCceeeehHHHHHHHH
Q 001460 404 VEAGWTIDYRPRKN--RDYLDAVYINPTGTAYWSIIKAYDALT 444 (1074)
Q Consensus 404 ~~agw~id~rpr~~--r~y~d~vy~~p~g~~~wsi~~ay~~~~ 444 (1074)
+-.||+-..++|++ .-..|..|++|.|+..=|....-..|.
T Consensus 6 ~p~GW~R~~~~r~~g~~~k~dv~Y~sP~Gk~~Rs~~ev~~yL~ 48 (62)
T cd00122 6 LPPGWKRELVIRKSGSAGKGDVYYYSPCGKKLRSKPEVARYLE 48 (62)
T ss_pred CCCCeEEEEEEcCCCCCCcceEEEECCCCceecCHHHHHHHHH
Confidence 36799999999998 899999999999998877665444443
No 123
>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=69.92 E-value=2 Score=44.58 Aligned_cols=26 Identities=15% Similarity=0.309 Sum_probs=20.2
Q ss_pred hhhhhccccccccccCCCCCccceeCCcchh
Q 001460 792 KYHKLCMQEMDALSDNLTGLVTSFCGRKCQE 822 (1074)
Q Consensus 792 ~YHv~CL~~~d~~p~~~~p~~~WFCs~~Cke 822 (1074)
.||..||.+ |+...|.+.|+|+ .|..
T Consensus 1 g~H~~CL~P----pl~~~P~g~W~Cp-~C~~ 26 (148)
T cd04718 1 GFHLCCLRP----PLKEVPEGDWICP-FCEV 26 (148)
T ss_pred CcccccCCC----CCCCCCCCCcCCC-CCcC
Confidence 499999986 5566788999996 6653
No 124
>smart00258 SAND SAND domain.
Probab=69.52 E-value=2.2 Score=39.54 Aligned_cols=40 Identities=33% Similarity=0.522 Sum_probs=30.7
Q ss_pred CeeeCC--C-CceeecceeeeccCCccccCc-eeEeccCCcchhh
Q 001460 649 GIHCGC--C-SKILTVSKFEIHAGSKLRQPF-QNIYLDSGVSLLQ 689 (1074)
Q Consensus 649 GI~C~C--C-~kvfS~SeFE~HAG~k~r~Py-~nI~L~~G~SLld 689 (1074)
||.+.| | +++|||++||.+||....+.| .+|.. +|++|..
T Consensus 22 G~~~kCI~~~~~~~TP~eFe~~~g~~~~K~WK~sIR~-~g~~Lr~ 65 (73)
T smart00258 22 GISVKCIQYEDKWFTPKEFEIEGGKGKSKDWKRSIRC-GGSSLRT 65 (73)
T ss_pred CcccCCccCCCEEEChHHHHhhcCCcccCCcchheeE-CCccHHH
Confidence 555555 2 579999999999999888899 45544 6888864
No 125
>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription]
Probab=69.51 E-value=0.76 Score=59.09 Aligned_cols=46 Identities=26% Similarity=0.408 Sum_probs=40.5
Q ss_pred cccccccccCCCCcEecCC-CCCcCCC-CCCCC----cCCCCCCCCCCCccc
Q 001460 717 NDDTCGICGDGGDLICCDG-CPSTFHQ-SCLDI----QMLPPGDWHCPNCTC 762 (1074)
Q Consensus 717 ndd~C~VCgdGGdLLcCD~-CprafH~-~CL~p----~~vP~g~W~Cp~C~C 762 (1074)
+.+.|.+|+..+.++||++ ||..||+ .||+- ..++++.|+|+.|.-
T Consensus 427 i~rrl~Ie~~det~l~yysT~pqly~ll~cLd~~~~e~~L~d~i~~~~ee~~ 478 (1414)
T KOG1473|consen 427 ISRRLRIEGMDETLLWYYSTCPQLYHLLRCLDRTYVEMYLCDGIWERREEII 478 (1414)
T ss_pred eeeeeEEecCCCcEEEEecCcHHHHHHHHHhchHHHHHhhccchhhhHHHHH
Confidence 4568999999999999998 9999998 99993 248999999999973
No 126
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=68.15 E-value=3.5 Score=47.93 Aligned_cols=44 Identities=34% Similarity=0.736 Sum_probs=30.4
Q ss_pred cccccccC---CCCcEecCCCCCcCCCCCCCCcCCCCCCCCCCCcccc
Q 001460 719 DTCGICGD---GGDLICCDGCPSTFHQSCLDIQMLPPGDWHCPNCTCK 763 (1074)
Q Consensus 719 d~C~VCgd---GGdLLcCD~CprafH~~CL~p~~vP~g~W~Cp~C~C~ 763 (1074)
+.|.+|-+ .|+.|-==-|...||..|.++..... .=+||-|+|.
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~-r~~CPvCK~d 276 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQT-RTFCPVCKRD 276 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhc-CccCCCCCCc
Confidence 79999986 35533224578999999999864332 2358888763
No 127
>PF02474 NodA: Nodulation protein A (NodA); InterPro: IPR003484 Rhizobial nodulation (Nod) factors are signalling molecules secreted by root-nodulating rhizobia in response to flavanoids excreted by the host plant. They induce various symbiotic responses on the roots of the leguminous host plant at low concentrations, and are required for successful infection. Rhizobial Nod factors are lipo-chitooligosaccharides carrying various substituents which are important determinants of host specificity []. NodA is an N-acyl transferase which specifies the transfer of an acyl chain to the oligosaccharide backbone of Nod factor. Allelic variation of the nodA gene can contribute to the determination of host range [].; GO: 0016746 transferase activity, transferring acyl groups
Probab=66.61 E-value=8.1 Score=41.33 Aligned_cols=51 Identities=20% Similarity=0.159 Sum_probs=43.1
Q ss_pred eEEeeeeeeeccccccChhHHHHHHHHHHHhhcCceEEEEcchhhhHHHhhh
Q 001460 937 LAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAIAELMHTWTR 988 (1074)
Q Consensus 937 ~AElPlvAT~~~yRrQGmgR~Lv~aIE~~L~~LgVe~LvlpA~~ea~~~Wt~ 988 (1074)
+|||=|.|++++.+|.|++..+ .++--.|+.|||..-|--.+..+..-.++
T Consensus 85 VaElGLygVRpDLEGlGi~hs~-r~m~PvLq~LgVPF~FGtVR~al~~Hv~R 135 (196)
T PF02474_consen 85 VAELGLYGVRPDLEGLGISHSM-RVMYPVLQELGVPFGFGTVRHALRNHVER 135 (196)
T ss_pred EEEEEEEEeeccccccccchhh-hhhhhHHHhcCCCeecccchHHHHHHHHH
Confidence 6999999999999999999976 69999999999987776666666665553
No 128
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=65.05 E-value=3.1 Score=36.65 Aligned_cols=29 Identities=31% Similarity=1.049 Sum_probs=25.3
Q ss_pred cccccccC----CCCcEecCCCCCcCCCCCCCC
Q 001460 719 DTCGICGD----GGDLICCDGCPSTFHQSCLDI 747 (1074)
Q Consensus 719 d~C~VCgd----GGdLLcCD~CprafH~~CL~p 747 (1074)
..|.+|++ +++.+.|..|...||-.|...
T Consensus 6 ~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~ 38 (54)
T PF14446_consen 6 CKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK 38 (54)
T ss_pred ccChhhCCcccCCCCEEECCCCCCcccHHHHhh
Confidence 47999985 678999999999999999854
No 129
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=63.78 E-value=3.9 Score=39.12 Aligned_cols=65 Identities=25% Similarity=0.645 Sum_probs=41.3
Q ss_pred ccccccCCCCcEecCCCCCcCCCCCCCC-cC----------------CCCC--CCCCCCccccccCCCCCCCCCCCCCCC
Q 001460 720 TCGICGDGGDLICCDGCPSTFHQSCLDI-QM----------------LPPG--DWHCPNCTCKFCGLAGEDDAEGDDTTT 780 (1074)
Q Consensus 720 ~C~VCgdGGdLLcCD~CprafH~~CL~p-~~----------------vP~g--~W~Cp~C~C~~Cg~~~~d~~eed~~s~ 780 (1074)
.|.+|...|.++--..-....|..|.-. +. ++.. .+ .|.+|+...
T Consensus 2 ~C~lC~~~~Galk~t~~~~WvHv~Cal~~~~~~~~~~~~~~~v~~~~i~~~~~~~-----~C~iC~~~~----------- 65 (110)
T PF13832_consen 2 SCVLCPKRGGALKRTSDGQWVHVLCALWIPEVIFNNGESMEPVDISNIPPSRFKL-----KCSICGKSG----------- 65 (110)
T ss_pred ccEeCCCCCCcccCccCCcEEEeEccceeCccEEeechhcCcccceeecchhcCC-----cCcCCCCCC-----------
Confidence 4888876654444444578888888842 10 1111 22 256676542
Q ss_pred cccccCCc--chhhhhhhcccc
Q 001460 781 SALLPCAM--CEKKYHKLCMQE 800 (1074)
Q Consensus 781 ~~Ll~CdQ--Cer~YHv~CL~~ 800 (1074)
+..+.|.. |...||+.|...
T Consensus 66 G~~i~C~~~~C~~~fH~~CA~~ 87 (110)
T PF13832_consen 66 GACIKCSHPGCSTAFHPTCARK 87 (110)
T ss_pred ceeEEcCCCCCCcCCCHHHHHH
Confidence 24789988 999999999764
No 130
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=61.89 E-value=2.8 Score=49.90 Aligned_cols=40 Identities=35% Similarity=0.528 Sum_probs=26.9
Q ss_pred ccccccccCCC----CcEecCCCCCcCCCCCCCCcCCCCCCCCCCCcc
Q 001460 718 DDTCGICGDGG----DLICCDGCPSTFHQSCLDIQMLPPGDWHCPNCT 761 (1074)
Q Consensus 718 dd~C~VCgdGG----dLLcCD~CprafH~~CL~p~~vP~g~W~Cp~C~ 761 (1074)
-++|.||-..- ..|.--.|..+||-.|+... ++-.||-|+
T Consensus 175 LPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w----~~~scpvcR 218 (493)
T KOG0804|consen 175 LPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKW----WDSSCPVCR 218 (493)
T ss_pred CCCcchhHhhcCccccceeeeecccccchHHHhhc----ccCcChhhh
Confidence 46899997432 24555568999999999653 233466555
No 131
>TIGR03019 pepcterm_femAB FemAB-related protein, PEP-CTERM system-associated. Members of this protein family are found always as part of extended exopolysaccharide biosynthesis loci in bacteria. In nearly every case, these loci contain determinants for the processing of the PEP-CTERM proposed C-terminal protein sorting signal. This family shows remote, local sequence similarity to the FemAB protein family (see pfam02388), whose members
Probab=60.78 E-value=28 Score=39.28 Aligned_cols=81 Identities=10% Similarity=0.068 Sum_probs=60.5
Q ss_pred EEEEe-eCCeEEEEEEEEEecCeeEEeeeeeeeccccccChhHHHHHHHHHHHhhcCceEEEEcchhh--hHHHhhhccC
Q 001460 915 TAILE-RGDEIISAASIRFHGTQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAIAE--LMHTWTRVFG 991 (1074)
Q Consensus 915 T~VLe-~~devVsaAsiRV~G~~~AElPlvAT~~~yRrQGmgR~Lv~aIE~~L~~LgVe~LvlpA~~e--a~~~Wt~kFG 991 (1074)
.++++ .++++|+++.+..++. .+.....|+.++|+..+-.-.|+-++.+.+.+-|++.+=+=.... -+-.+..+||
T Consensus 197 l~~a~~~~g~~va~~l~~~~~~-~~~~~~~g~~~~~~~~~~~~lL~w~~i~~a~~~G~~~fDfG~s~~~~G~~~FK~~~G 275 (330)
T TIGR03019 197 VLTVRLGDGVVASAVLSFYFRD-EVLPYYAGGLREARDVAANDLMYWELMRRACERGLRVFDFGRSKRGTGPFKFKKNWG 275 (330)
T ss_pred EEEEEeCCCCEEEEEEEEEeCC-EEEEEeccChHHHHhhChHHHHHHHHHHHHHHCCCcEEEcCCCCCCCccHHHHhcCC
Confidence 34456 6889998888766654 455558889999999999999999999999999999988643322 2333555678
Q ss_pred cEEcc
Q 001460 992 FTSLE 996 (1074)
Q Consensus 992 F~~m~ 996 (1074)
|.+++
T Consensus 276 ~~~~~ 280 (330)
T TIGR03019 276 FEPQP 280 (330)
T ss_pred Ceecc
Confidence 87665
No 132
>COG5628 Predicted acetyltransferase [General function prediction only]
Probab=58.74 E-value=45 Score=34.21 Aligned_cols=84 Identities=18% Similarity=0.176 Sum_probs=55.7
Q ss_pred EEEEeeCCeEEEEEEE--EEecC-----eeEEeeeeeeeccccccChhHHHHHHHHHHHhhcCceEEEEcchhhhHHHhh
Q 001460 915 TAILERGDEIISAASI--RFHGT-----QLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAIAELMHTWT 987 (1074)
Q Consensus 915 T~VLe~~devVsaAsi--RV~G~-----~~AElPlvAT~~~yRrQGmgR~Lv~aIE~~L~~LgVe~LvlpA~~ea~~~Wt 987 (1074)
.+++..+|.+|+-|.+ ++|-. .++|+=.| ..||+.||||....+|-.+.+.+ -+-.+++--..|+++|.
T Consensus 39 ~~~~~~~~~~igf~l~L~~~~~~~~iD~~~~efFIi---~k~~~~GvGR~aaK~If~~~~g~-w~Va~i~EN~PA~~fwK 114 (143)
T COG5628 39 AWLFRIGGLPVGFALVLDLAHSPTPIDRAVAEFFIV---RKHRRRGVGRAAAKAIFGSAWGV-WQVATVRENTPARAFWK 114 (143)
T ss_pred eeEEEECCceeeeeeeecccCCCCcccccchheEee---ehhhccchhHHHHHHHHHHhhce-EEEEEeccCChhHHHHH
Confidence 4455678888887765 22222 45665444 47999999999999998874432 35567788889999999
Q ss_pred hccCcEE-ccHHHHHhh
Q 001460 988 RVFGFTS-LEESLKQEM 1003 (1074)
Q Consensus 988 ~kFGF~~-m~~~~k~~~ 1003 (1074)
. |-.+. +..++++..
T Consensus 115 ~-~~~t~~i~~E~r~d~ 130 (143)
T COG5628 115 R-VAETYPVVEEDRQDA 130 (143)
T ss_pred h-hhcccccchhhhhcc
Confidence 5 55543 333444433
No 133
>cd04265 DUF619-NAGS-U DUF619 domain of various N-acetylglutamate Synthases (NAGS) of the urea (U) cycle of humans and fish. This family includes the DUF619 domain of various N-acetylglutamate synthases (NAGS) of the urea cycle found in humans and fish, the DUF619 domain of the NAGS of the fungal arginine-biosynthetic pathway (FABP), as well as the DUF619 domain present in C-terminal of a NAG kinase-like domain in a limited number of predicted NAGSs found in bacteria and Dictyostelium. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate. NAGS is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Domain architecture of ureogenic and fungal NAGS consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. The DUF619 domain function has yet to be characterized.
Probab=57.68 E-value=15 Score=35.70 Aligned_cols=42 Identities=12% Similarity=0.093 Sum_probs=33.2
Q ss_pred EEEEEEEec-CeeEEeeeeeeeccccccChhHHHHHHHHHHHh
Q 001460 926 SAASIRFHG-TQLAEMPFIGTRHIYRRQGMCRRLFCALESALC 967 (1074)
Q Consensus 926 saAsiRV~G-~~~AElPlvAT~~~yRrQGmgR~Lv~aIE~~L~ 967 (1074)
+||.+.--. ..++-|=.+|+.+..|++|+++.|+++|-+...
T Consensus 22 ~~aivt~~~~~~~~yLdKfaV~~~~~g~gv~d~vf~~i~~d~~ 64 (99)
T cd04265 22 AAAIVTNEEVDGVPYLDKFAVSSSAQGEGTGEALWRRLRRDFP 64 (99)
T ss_pred EEEEEeccCCCCceEEEEEEEchhhhhcChHHHHHHHHHhhCC
Confidence 344443222 368999999999999999999999999988743
No 134
>PF01853 MOZ_SAS: MOZ/SAS family; InterPro: IPR002717 Moz is a monocytic leukemia Zn_finger protein and the SAS protein from Saccharomyces cerevisiae (Baker's yeast) is involved in silencing the Hmr locus. These proteins were reported to be homologous to acetyltransferases [] but this similarity is not supported by standard sequence analysis.; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3TO6_A 1MJA_A 1MJ9_A 3TO7_A 3TO9_A 1MJB_A 1FY7_A 2OZU_A 2RC4_A 2OU2_A ....
Probab=57.03 E-value=26 Score=37.89 Aligned_cols=84 Identities=20% Similarity=0.202 Sum_probs=46.7
Q ss_pred hhhhHHHhhhhcccccccccCCCCcccchhhhccCCCCcccccCcceEEEEeeCC--eEEEEEEEEEecCeeEEeeeeee
Q 001460 868 SKLAVALNVMDECFLPIVDRRSGINLIHNVLYNSGSNFNRLNYSGFYTAILERGD--EIISAASIRFHGTQLAEMPFIGT 945 (1074)
Q Consensus 868 SKLAvALtIm~ECF~PIvD~rTGrDLIpdmVYn~GSnFkRldF~GFYT~VLe~~d--evVsaAsiRV~G~~~AElPlvAT 945 (1074)
..-+..|.+|--+|. |..| +.|. .+.--||.+.-.+++ .+|+-=|---+..+---|--|-|
T Consensus 26 ~~yCqnLcLlaKLFL---d~Kt-------lyyd-------v~~F~FYVl~e~d~~g~h~vGyFSKEk~s~~~~NLsCIl~ 88 (188)
T PF01853_consen 26 KLYCQNLCLLAKLFL---DHKT-------LYYD-------VDPFLFYVLTEKDDDGFHIVGYFSKEKESWDNNNLSCILT 88 (188)
T ss_dssp HHHHHHHHHHHHTT----SSGC-------CTT--------STTEEEEEEEEEETTEEEEEEEEEEESS-TT-EEESEEEE
T ss_pred chHHHHHHHHHHHHh---hCeE-------EEee-------cCceEEEEEEEecCccceeEEEEEEEecccCCeeEeehhh
Confidence 445677777777776 4444 2332 233346665544443 24433332222222235667899
Q ss_pred eccccccChhHHHHHHHHHHHhh
Q 001460 946 RHIYRRQGMCRRLFCALESALCS 968 (1074)
Q Consensus 946 ~~~yRrQGmgR~Lv~aIE~~L~~ 968 (1074)
.|.||++|+|+.|++.-=.+.+.
T Consensus 89 lP~yQrkGyG~~LI~fSY~LSr~ 111 (188)
T PF01853_consen 89 LPPYQRKGYGRFLIDFSYELSRR 111 (188)
T ss_dssp -GGGTTSSHHHHHHHHHHHHHHH
T ss_pred cchhhhcchhhhhhhhHHHHhhc
Confidence 99999999999999875544443
No 135
>KOG1701 consensus Focal adhesion adaptor protein Paxillin and related LIM proteins [Signal transduction mechanisms]
Probab=56.99 E-value=2.7 Score=49.72 Aligned_cols=42 Identities=14% Similarity=0.346 Sum_probs=22.8
Q ss_pred CCCCCCCcc-------ccccCCCCCCCC-CCCCCCCcccccCCcchhhhhhhcccc
Q 001460 753 GDWHCPNCT-------CKFCGLAGEDDA-EGDDTTTSALLPCAMCEKKYHKLCMQE 800 (1074)
Q Consensus 753 g~W~Cp~C~-------C~~Cg~~~~d~~-eed~~s~~~Ll~CdQCer~YHv~CL~~ 800 (1074)
..-||..|- |.+|+.+---.. +++.+ .-..=+|-||+.|+.-
T Consensus 381 n~v~Cv~dfh~kfAPrCs~C~~PI~P~~G~~etv------Rvvamdr~fHv~CY~C 430 (468)
T KOG1701|consen 381 NNVYCVPDFHKKFAPRCSVCGNPILPRDGKDETV------RVVAMDRDFHVNCYKC 430 (468)
T ss_pred CceeeehhhhhhcCcchhhccCCccCCCCCcceE------EEEEccccccccceeh
Confidence 456776663 888886643211 11111 1112367899998763
No 136
>KOG1246 consensus DNA-binding protein jumonji/RBP2/SMCY, contains JmjC domain [General function prediction only]
Probab=52.48 E-value=17 Score=47.08 Aligned_cols=51 Identities=33% Similarity=0.897 Sum_probs=40.5
Q ss_pred ccccccccCCCC--cEecCCCCCcCCCCCCCCc--CCCCCCCCCCCccccccCCC
Q 001460 718 DDTCGICGDGGD--LICCDGCPSTFHQSCLDIQ--MLPPGDWHCPNCTCKFCGLA 768 (1074)
Q Consensus 718 dd~C~VCgdGGd--LLcCD~CprafH~~CL~p~--~vP~g~W~Cp~C~C~~Cg~~ 768 (1074)
...|..|..+.. ++.|+.|...||..|+.++ .+++++|.|+.|...-|...
T Consensus 155 ~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (904)
T KOG1246|consen 155 YPQCNTCSKGKEEKLLLCDSCDDSYHTYCLRPPLTRVPDGDWRCPKCIPTPESKP 209 (904)
T ss_pred chhhhccccCCCccceecccccCcccccccCCCCCcCCcCcccCCcccccccCCc
Confidence 357888986653 4499999999999999974 58899999999987655433
No 137
>PRK13834 putative autoinducer synthesis protein; Provisional
Probab=51.98 E-value=97 Score=33.54 Aligned_cols=93 Identities=8% Similarity=0.104 Sum_probs=66.9
Q ss_pred CCCCccccc-CcceEEEEeeCCeEEEEEEE----------E----Ee-------cCeeEEeeeeeeecccc---ccC---
Q 001460 902 GSNFNRLNY-SGFYTAILERGDEIISAASI----------R----FH-------GTQLAEMPFIGTRHIYR---RQG--- 953 (1074)
Q Consensus 902 GSnFkRldF-~GFYT~VLe~~devVsaAsi----------R----V~-------G~~~AElPlvAT~~~yR---rQG--- 953 (1074)
|-++..+|. .-.|.+.+..+++|||++-| . ++ ..++.|+==+|+.++++ +.+
T Consensus 42 g~E~D~yD~~~~~yll~~~~~g~vvG~~RLlptt~p~ml~~~fp~l~~~~~~~~~~~v~E~SRf~V~~~~~~~~~~~~~~ 121 (207)
T PRK13834 42 GEERDQFDDLKPTYILAISDSGRVAGCARLLPAIGPTMLAQVFPQLLPAGRLNAHPAMIESSRFCVDTALAEGRGGGQLH 121 (207)
T ss_pred CcCccCCCCCCCEEEEEEeCCCeEEEEEecccCCCcchhhhhcHHhcCCCCCCCCCCEEEEeeeEEcccccccccccccC
Confidence 455666663 44677777788899987644 0 11 24788998899988753 222
Q ss_pred -hhHHHHHHHHHHHhhcCceEEEEcchhhhHHHhhhccCcEEc
Q 001460 954 -MCRRLFCALESALCSLKVEKLIIPAIAELMHTWTRVFGFTSL 995 (1074)
Q Consensus 954 -mgR~Lv~aIE~~L~~LgVe~LvlpA~~ea~~~Wt~kFGF~~m 995 (1074)
+...|+.++-+.....|++.++.-..+..+.++. ++||..-
T Consensus 122 ~~~~~L~~~~~~~a~~~Gi~~~~~v~~~~~~r~l~-r~G~~~~ 163 (207)
T PRK13834 122 EATLTMFAGIIEWSMANGYTEIVTATDLRFERILA-RAGWPMQ 163 (207)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHH-HcCCCeE
Confidence 5578999999999999999999777776666665 6887653
No 138
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=50.34 E-value=8.7 Score=33.94 Aligned_cols=34 Identities=29% Similarity=0.849 Sum_probs=26.2
Q ss_pred CccccccCCCCCCCCCCCCCCCcccccCCcchhhhhhhcccc
Q 001460 759 NCTCKFCGLAGEDDAEGDDTTTSALLPCAMCEKKYHKLCMQE 800 (1074)
Q Consensus 759 ~C~C~~Cg~~~~d~~eed~~s~~~Ll~CdQCer~YHv~CL~~ 800 (1074)
.+.|..|+..-.+ ...++.|..|...||-.|...
T Consensus 5 ~~~C~~Cg~~~~~--------~dDiVvCp~CgapyHR~C~~~ 38 (54)
T PF14446_consen 5 GCKCPVCGKKFKD--------GDDIVVCPECGAPYHRDCWEK 38 (54)
T ss_pred CccChhhCCcccC--------CCCEEECCCCCCcccHHHHhh
Confidence 4568889876532 234799999999999999864
No 139
>PLN03238 probable histone acetyltransferase MYST; Provisional
Probab=50.22 E-value=22 Score=40.60 Aligned_cols=30 Identities=20% Similarity=0.131 Sum_probs=23.9
Q ss_pred EeeeeeeeccccccChhHHHHHHHHHHHhh
Q 001460 939 EMPFIGTRHIYRRQGMCRRLFCALESALCS 968 (1074)
Q Consensus 939 ElPlvAT~~~yRrQGmgR~Lv~aIE~~L~~ 968 (1074)
-|--|-|.|.||++|+|+.|++.-=++-+.
T Consensus 157 NLaCIltLPpyQrkGyG~~LI~fSYeLSr~ 186 (290)
T PLN03238 157 NLACILTLPPYQRKGYGKFLISFAYELSKR 186 (290)
T ss_pred cEEEEEecChhhhccHhHhHHHHHhHHhhc
Confidence 367889999999999999999865554433
No 140
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A.
Probab=50.14 E-value=5.5 Score=32.12 Aligned_cols=31 Identities=23% Similarity=0.443 Sum_probs=15.2
Q ss_pred ccccCCcchhhhhhhccccccccccCCCCCccceeC
Q 001460 782 ALLPCAMCEKKYHKLCMQEMDALSDNLTGLVTSFCG 817 (1074)
Q Consensus 782 ~Ll~CdQCer~YHv~CL~~~d~~p~~~~p~~~WFCs 817 (1074)
.++.|+.|.-..|..|+.-... .....|+|.
T Consensus 3 ~ll~C~~C~v~VH~~CYGv~~~-----~~~~~W~C~ 33 (36)
T PF13831_consen 3 PLLFCDNCNVAVHQSCYGVSEV-----PDGDDWLCD 33 (36)
T ss_dssp EEEE-SSS--EEEHHHHT-SS-------SS-----H
T ss_pred ceEEeCCCCCcCChhhCCcccC-----CCCCcEECC
Confidence 5899999999999999874211 122359983
No 141
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=48.59 E-value=7.8 Score=35.16 Aligned_cols=28 Identities=39% Similarity=0.916 Sum_probs=11.6
Q ss_pred cccccccCC----CC--cEecC--CCCCcCCCCCCC
Q 001460 719 DTCGICGDG----GD--LICCD--GCPSTFHQSCLD 746 (1074)
Q Consensus 719 d~C~VCgdG----Gd--LLcCD--~CprafH~~CL~ 746 (1074)
..|.||... ++ .+.|+ .|...||..||-
T Consensus 3 ~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~ 38 (70)
T PF11793_consen 3 LECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLS 38 (70)
T ss_dssp -S-SSS--SS-TT-----B--S-TT----B-SGGGH
T ss_pred CCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHH
Confidence 468888642 22 57898 899999999996
No 142
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=45.52 E-value=6.9 Score=37.35 Aligned_cols=40 Identities=30% Similarity=0.685 Sum_probs=24.1
Q ss_pred cccccCCCC---cEecCCCCCcCCCCCCCCcC-CCCCCCCCCCcc
Q 001460 721 CGICGDGGD---LICCDGCPSTFHQSCLDIQM-LPPGDWHCPNCT 761 (1074)
Q Consensus 721 C~VCgdGGd---LLcCD~CprafH~~CL~p~~-vP~g~W~Cp~C~ 761 (1074)
|..|.-+|+ ++++ .|...||..|+.... .+...=.||.|+
T Consensus 35 Cp~Ck~Pgd~Cplv~g-~C~H~FH~hCI~kWl~~~~~~~~CPmCR 78 (85)
T PF12861_consen 35 CPDCKFPGDDCPLVWG-KCSHNFHMHCILKWLSTQSSKGQCPMCR 78 (85)
T ss_pred CCCccCCCCCCceeec-cCccHHHHHHHHHHHccccCCCCCCCcC
Confidence 334444554 4444 499999999997421 122234788876
No 143
>KOG2747 consensus Histone acetyltransferase (MYST family) [Chromatin structure and dynamics]
Probab=44.07 E-value=19 Score=42.66 Aligned_cols=22 Identities=27% Similarity=0.280 Sum_probs=20.2
Q ss_pred eeeeeeeccccccChhHHHHHH
Q 001460 940 MPFIGTRHIYRRQGMCRRLFCA 961 (1074)
Q Consensus 940 lPlvAT~~~yRrQGmgR~Lv~a 961 (1074)
|--|=|.|.|||+|||+.|++.
T Consensus 263 laCILtLPpyQRkGYGklLIdF 284 (396)
T KOG2747|consen 263 LACILTLPPYQRKGYGKLLIDF 284 (396)
T ss_pred eeeeeecChhhhcccchhhhhh
Confidence 7789999999999999999874
No 144
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=43.78 E-value=14 Score=45.75 Aligned_cols=36 Identities=33% Similarity=0.743 Sum_probs=24.4
Q ss_pred cccccccccCCCCcEecCCCCCcCCCCCCCCcCCCCCCCCCCCcc
Q 001460 717 NDDTCGICGDGGDLICCDGCPSTFHQSCLDIQMLPPGDWHCPNCT 761 (1074)
Q Consensus 717 ndd~C~VCgdGGdLLcCD~CprafH~~CL~p~~vP~g~W~Cp~C~ 761 (1074)
--+.|..|+..|..+.|+.|+..++. ..+..|+.|.
T Consensus 67 v~~~c~~c~G~gkv~~c~~cG~~~~~---------~~~~lc~~c~ 102 (715)
T COG1107 67 VYDTCPECGGTGKVLTCDICGDIIVP---------WEEGLCPECR 102 (715)
T ss_pred EEeecccCCCceeEEeeccccceecC---------cccccChhHh
Confidence 34678888888888888888776653 1222677775
No 145
>PF07897 DUF1675: Protein of unknown function (DUF1675); InterPro: IPR012463 The members of this family are sequences derived from hypothetical plant proteins of unknown function. One member of this family (Q9SFV5 from SWISSPROT) is annotated as a putative RNA-binding protein, but no evidence was found to support this.
Probab=43.15 E-value=10 Score=43.10 Aligned_cols=40 Identities=33% Similarity=0.714 Sum_probs=32.2
Q ss_pred eeeeeeecCC------eeeCCCCceeecceeeeccCCc-cccCceeE
Q 001460 640 MLEGWITRDG------IHCGCCSKILTVSKFEIHAGSK-LRQPFQNI 679 (1074)
Q Consensus 640 lL~G~it~~G------I~C~CC~kvfS~SeFE~HAG~k-~r~Py~nI 679 (1074)
-++|+.++-+ |.|.|=...|+|.+|-.|||.. ...|..+|
T Consensus 237 ~i~g~ly~y~~~~~v~i~c~chg~~~~~~efv~h~~~~~~~~p~~hi 283 (284)
T PF07897_consen 237 RIEGFLYKYGKGEEVRIVCVCHGSFLSPAEFVKHAGGGDVANPLRHI 283 (284)
T ss_pred eeeEEEEEecCCCeEEEEEEecCCCCCHHHHHHhcCCCCcCCchhcc
Confidence 4677776652 8999999999999999999985 46777666
No 146
>PRK00756 acyltransferase NodA; Provisional
Probab=42.96 E-value=34 Score=36.65 Aligned_cols=37 Identities=24% Similarity=0.279 Sum_probs=33.4
Q ss_pred eeEEeeeeeeeccccccChhHHHHHHHHHHHhhcCceE
Q 001460 936 QLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEK 973 (1074)
Q Consensus 936 ~~AElPlvAT~~~yRrQGmgR~Lv~aIE~~L~~LgVe~ 973 (1074)
=+||+=|.|++|+..|+|++..+ .++--.|+.|||..
T Consensus 84 LVaElGLygVRpDLEGlGi~~S~-r~m~PvLq~LgVPF 120 (196)
T PRK00756 84 LVAELGLYGVRPDLEGLGIAHSI-RAMYPVLQELGVPF 120 (196)
T ss_pred eEEEeeeeeeccccccccchhhH-HHHHHHHHhcCCCe
Confidence 47999999999999999999877 69999999999963
No 147
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=41.87 E-value=15 Score=36.01 Aligned_cols=35 Identities=37% Similarity=1.079 Sum_probs=22.3
Q ss_pred CCCCcCCCCCCCC-------cCCCCCCCCCCCcc----ccccCCCC
Q 001460 735 GCPSTFHQSCLDI-------QMLPPGDWHCPNCT----CKFCGLAG 769 (1074)
Q Consensus 735 ~CprafH~~CL~p-------~~vP~g~W~Cp~C~----C~~Cg~~~ 769 (1074)
.|...|=..||-- +.+.+..|.||.|+ |.+|....
T Consensus 35 ~~~~~fC~~CL~~ryge~~~ev~~~~~W~CP~CrgiCnCs~Crrk~ 80 (105)
T PF10497_consen 35 GCRGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRGICNCSFCRRKR 80 (105)
T ss_pred cCcceehHhHHHHHHhhhHHHHhcCCceECCCCCCeeCCHhhhccC
Confidence 3355565566632 22456889999987 77776554
No 148
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=41.81 E-value=16 Score=45.27 Aligned_cols=36 Identities=25% Similarity=0.603 Sum_probs=26.1
Q ss_pred CcccccCCcchhhhhhhccccccccccCCCCCccceeCCcchhhHHHH
Q 001460 780 TSALLPCAMCEKKYHKLCMQEMDALSDNLTGLVTSFCGRKCQELSEHL 827 (1074)
Q Consensus 780 ~~~Ll~CdQCer~YHv~CL~~~d~~p~~~~p~~~WFCs~~CkeI~e~L 827 (1074)
......|..|...||..|+... --||..|..+..+-
T Consensus 528 ~~~~~rC~~C~avfH~~C~~r~------------s~~CPrC~R~q~r~ 563 (580)
T KOG1829|consen 528 TRNTRRCSTCLAVFHKKCLRRK------------SPCCPRCERRQKRA 563 (580)
T ss_pred cccceeHHHHHHHHHHHHHhcc------------CCCCCchHHHHHHh
Confidence 3456899999999999998852 12356887766543
No 149
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=41.72 E-value=9.4 Score=43.20 Aligned_cols=50 Identities=24% Similarity=0.419 Sum_probs=30.2
Q ss_pred cccccccCCcccCC-CCCCccccccccccCCC------C----cEecCCCCCcCCCCCCCC
Q 001460 698 LKESESIGFESVDV-DGDDPNDDTCGICGDGG------D----LICCDGCPSTFHQSCLDI 747 (1074)
Q Consensus 698 q~~sEk~G~~~v~~-d~dd~ndd~C~VCgdGG------d----LLcCD~CprafH~~CL~p 747 (1074)
..++...|+...+. .....++..|.+|+..= + -+.==.|...||..|..-
T Consensus 203 d~mAs~iGfYs~~glPtkhl~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrG 263 (328)
T KOG1734|consen 203 DYMASTIGFYSPSGLPTKHLSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRG 263 (328)
T ss_pred HHHHHHhcccCCCCCCCCCCCcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhh
Confidence 34555667754322 23456788999998521 1 111114899999999864
No 150
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=41.14 E-value=12 Score=35.80 Aligned_cols=30 Identities=40% Similarity=1.005 Sum_probs=25.7
Q ss_pred ccccccccC-CCCcEecCC--CCCcCCCCCCCC
Q 001460 718 DDTCGICGD-GGDLICCDG--CPSTFHQSCLDI 747 (1074)
Q Consensus 718 dd~C~VCgd-GGdLLcCD~--CprafH~~CL~p 747 (1074)
...|.+|+. .|-.+-|.. |..+||+.|.-.
T Consensus 55 ~~~C~iC~~~~G~~i~C~~~~C~~~fH~~CA~~ 87 (110)
T PF13832_consen 55 KLKCSICGKSGGACIKCSHPGCSTAFHPTCARK 87 (110)
T ss_pred CCcCcCCCCCCceeEEcCCCCCCcCCCHHHHHH
Confidence 568999998 577999997 999999999853
No 151
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=39.53 E-value=21 Score=38.42 Aligned_cols=37 Identities=35% Similarity=0.907 Sum_probs=27.9
Q ss_pred ccccccccCCC--------CcEecCCCCCcCCCCCCCCcCCCCCCCCCCCcc
Q 001460 718 DDTCGICGDGG--------DLICCDGCPSTFHQSCLDIQMLPPGDWHCPNCT 761 (1074)
Q Consensus 718 dd~C~VCgdGG--------dLLcCD~CprafH~~CL~p~~vP~g~W~Cp~C~ 761 (1074)
...|.+|.+.+ ....|..|...||..|... =.||.|.
T Consensus 152 GfiCe~C~~~~~IfPF~~~~~~~C~~C~~v~H~~C~~~-------~~CpkC~ 196 (202)
T PF13901_consen 152 GFICEICNSDDIIFPFQIDTTVRCPKCKSVFHKSCFRK-------KSCPKCA 196 (202)
T ss_pred CCCCccCCCCCCCCCCCCCCeeeCCcCccccchhhcCC-------CCCCCcH
Confidence 35788888653 3688999999999999963 1277774
No 152
>KOG4135 consensus Predicted phosphoglucosamine acetyltransferase [Carbohydrate transport and metabolism]
Probab=38.77 E-value=59 Score=34.46 Aligned_cols=58 Identities=19% Similarity=0.175 Sum_probs=39.4
Q ss_pred EEeeeeeeeccccccChhHHHHHHHHHHHhh-cCceEEEEcc---hhhhHHHhhhccCcEEcc
Q 001460 938 AEMPFIGTRHIYRRQGMCRRLFCALESALCS-LKVEKLIIPA---IAELMHTWTRVFGFTSLE 996 (1074)
Q Consensus 938 AElPlvAT~~~yRrQGmgR~Lv~aIE~~L~~-LgVe~LvlpA---~~ea~~~Wt~kFGF~~m~ 996 (1074)
+|+-+.-.-|..||+|+|+-.|.++.....+ |++.++.+-. -...+.+.. ||+|+.+-
T Consensus 108 gE~EvMIAEP~~RgKG~G~eav~~ml~y~~s~l~l~Ky~vkig~~nk~sl~lFk-k~~f~q~~ 169 (185)
T KOG4135|consen 108 GEVEVMIAEPRGRGKGIGTEAVRAMLAYAYSVLKLDKYEVKIGMDNKPSLRLFK-KFLFTQVF 169 (185)
T ss_pred eeEEEEEecccccCCCccHHHHHHHHHHHHHHhhhheEEEEecCCCchHHHHHH-Hhhheeee
Confidence 4444444568999999999999888887654 5666666554 234556666 68887653
No 153
>PF12148 DUF3590: Protein of unknown function (DUF3590); InterPro: IPR021991 This domain is found in eukaryotes, and is typically between 83 and 97 amino acids in length. It is found in association with PF00097 from PFAM, PF02182 from PFAM, PF00628 from PFAM, PF00240 from PFAM. There are two conserved sequence motifs: RAR and NYN. The domain is part of the protein NIRF which has zinc finger and ubiquitinating domains. The function of this domain is likely to be mainly structural, however this has not been confirmed. ; PDB: 3DB4_A 3ASK_A 3DB3_A 2L3R_A.
Probab=38.55 E-value=15 Score=35.24 Aligned_cols=31 Identities=19% Similarity=0.217 Sum_probs=18.3
Q ss_pred CCcchhhhhhhccCceeecceEEEeecccccceeee
Q 001460 608 AGKLTLLSWLIDSGTVQLSQKVQYMNRRRTKVMLEG 643 (1074)
Q Consensus 608 ~~kRTVLSwLID~G~V~~~~kV~Y~n~~~~~~lL~G 643 (1074)
+++||+|.| ..+..+.++|+||+.+++..+|
T Consensus 55 pRARt~l~w-----~~L~VG~~VMvNYN~d~P~erG 85 (85)
T PF12148_consen 55 PRARTILKW-----DELKVGQVVMVNYNVDEPKERG 85 (85)
T ss_dssp E---SBE-G-----GG--TT-EEEEEE-TTSTTS--
T ss_pred ceeeEeccH-----HhCCcccEEEEecCCCCcccCc
Confidence 578999999 7788899999999998887665
No 154
>KOG3612 consensus PHD Zn-finger protein [General function prediction only]
Probab=37.22 E-value=23 Score=43.44 Aligned_cols=45 Identities=22% Similarity=0.329 Sum_probs=37.6
Q ss_pred cccccccccCCCCcEecCCCCCcCCCCCCCCc-CCCC--CCCCCCCcc
Q 001460 717 NDDTCGICGDGGDLICCDGCPSTFHQSCLDIQ-MLPP--GDWHCPNCT 761 (1074)
Q Consensus 717 ndd~C~VCgdGGdLLcCD~CprafH~~CL~p~-~vP~--g~W~Cp~C~ 761 (1074)
.+..|+-|.-.|..+.|+.|-+.||..|+.+. ..+. ..|.|+.|.
T Consensus 59 ~d~~cfechlpg~vl~c~vc~Rs~h~~c~sp~~q~r~~s~p~~~p~p~ 106 (588)
T KOG3612|consen 59 IDPFCFECHLPGAVLKCIVCHRSFHENCQSPDPQKRNYSVPSDKPQPY 106 (588)
T ss_pred CCcccccccCCcceeeeehhhccccccccCcchhhccccccccCCccc
Confidence 45689999999999999999999999999873 3333 569999876
No 155
>PLN03239 histone acetyltransferase; Provisional
Probab=37.18 E-value=41 Score=39.49 Aligned_cols=28 Identities=21% Similarity=0.084 Sum_probs=23.0
Q ss_pred EeeeeeeeccccccChhHHHHHHHHHHH
Q 001460 939 EMPFIGTRHIYRRQGMCRRLFCALESAL 966 (1074)
Q Consensus 939 ElPlvAT~~~yRrQGmgR~Lv~aIE~~L 966 (1074)
-|--|-|.|.|||+|+|+.|++.-=++-
T Consensus 215 NLaCIltLPpyQrkGyG~lLI~fSYeLS 242 (351)
T PLN03239 215 NLACILTFPAHQRKGYGRFLIAFSYELS 242 (351)
T ss_pred ceEEEEecChhhhcchhhhhHhhhhHhh
Confidence 4778999999999999999998654443
No 156
>PF05502 Dynactin_p62: Dynactin p62 family; InterPro: IPR008603 Dynactin is a multi-subunit complex and a required cofactor for most, or all, o f the cellular processes powered by the microtubule-based motor cytoplasmic dyn ein. p62 binds directly to the Arp1 subunit of dynactin [, ].
Probab=36.83 E-value=24 Score=42.89 Aligned_cols=30 Identities=27% Similarity=0.764 Sum_probs=20.1
Q ss_pred CcEecCCCCCcCCCCCCCCcCCCCCCCCCCCcc
Q 001460 729 DLICCDGCPSTFHQSCLDIQMLPPGDWHCPNCT 761 (1074)
Q Consensus 729 dLLcCD~CprafH~~CL~p~~vP~g~W~Cp~C~ 761 (1074)
+|.+|..|..-=...|+..+ ...||||.|.
T Consensus 4 ~L~fC~~C~~irc~~c~~~E---i~~~yCp~CL 33 (483)
T PF05502_consen 4 ELYFCEHCHKIRCPRCVSEE---IDSYYCPNCL 33 (483)
T ss_pred cceecccccccCChhhcccc---cceeECcccc
Confidence 57788888766556666442 2468888885
No 157
>KOG3576 consensus Ovo and related transcription factors [Transcription]
Probab=36.25 E-value=12 Score=41.11 Aligned_cols=63 Identities=27% Similarity=0.585 Sum_probs=36.6
Q ss_pred CCcEecCCCCCcC--------CCCCCCCcCCCCCCCCCCCccccccCCCCCCCCC----CCCCCCcccccCCcchhhhhh
Q 001460 728 GDLICCDGCPSTF--------HQSCLDIQMLPPGDWHCPNCTCKFCGLAGEDDAE----GDDTTTSALLPCAMCEKKYHK 795 (1074)
Q Consensus 728 GdLLcCD~Cpraf--------H~~CL~p~~vP~g~W~Cp~C~C~~Cg~~~~d~~e----ed~~s~~~Ll~CdQCer~YHv 795 (1074)
++...|+.|.++| |+.|...- ....|.+||+.-.|.-+ ..+.+...-..|.+|+++|-+
T Consensus 115 ~d~ftCrvCgK~F~lQRmlnrh~kch~~v---------kr~lct~cgkgfndtfdlkrh~rthtgvrpykc~~c~kaftq 185 (267)
T KOG3576|consen 115 QDSFTCRVCGKKFGLQRMLNRHLKCHSDV---------KRHLCTFCGKGFNDTFDLKRHTRTHTGVRPYKCSLCEKAFTQ 185 (267)
T ss_pred CCeeeeehhhhhhhHHHHHHHHhhhccHH---------HHHHHhhccCcccchhhhhhhhccccCccccchhhhhHHHHh
Confidence 4566666666666 66666431 11236678765433210 111222345889999999999
Q ss_pred hccc
Q 001460 796 LCMQ 799 (1074)
Q Consensus 796 ~CL~ 799 (1074)
.|.-
T Consensus 186 rcsl 189 (267)
T KOG3576|consen 186 RCSL 189 (267)
T ss_pred hccH
Confidence 9943
No 158
>PTZ00064 histone acetyltransferase; Provisional
Probab=35.92 E-value=43 Score=41.07 Aligned_cols=27 Identities=22% Similarity=0.188 Sum_probs=22.5
Q ss_pred EeeeeeeeccccccChhHHHHHHHHHH
Q 001460 939 EMPFIGTRHIYRRQGMCRRLFCALESA 965 (1074)
Q Consensus 939 ElPlvAT~~~yRrQGmgR~Lv~aIE~~ 965 (1074)
-|--|-|.|.|||+|||+.|++.==.+
T Consensus 386 NLACILtLPpyQRKGYGklLIdfSYeL 412 (552)
T PTZ00064 386 NLACILTLPCYQRKGYGKLLVDLSYKL 412 (552)
T ss_pred ceEEEEecchhhhcchhhhhhhhhhhh
Confidence 467889999999999999999765444
No 159
>PLN00104 MYST -like histone acetyltransferase; Provisional
Probab=35.45 E-value=35 Score=41.28 Aligned_cols=24 Identities=25% Similarity=0.278 Sum_probs=21.0
Q ss_pred EeeeeeeeccccccChhHHHHHHH
Q 001460 939 EMPFIGTRHIYRRQGMCRRLFCAL 962 (1074)
Q Consensus 939 ElPlvAT~~~yRrQGmgR~Lv~aI 962 (1074)
-|--|-|.|.||++|||+.|++.-
T Consensus 308 NLaCIltlP~yQrkGyG~~LI~~S 331 (450)
T PLN00104 308 NLACILTLPPYQRKGYGKFLIAFS 331 (450)
T ss_pred ceEEEEecchhhhcchhheehhhe
Confidence 477889999999999999998753
No 160
>PF05301 Mec-17: Touch receptor neuron protein Mec-17; InterPro: IPR007965 Mec-17 is the protein product of one of the 18 genes required for the development and function of the touch receptor neuron for gentle touch. Mec-17 is specifically required for maintaining the differentiation of the touch receptor []. This family is conserved to higher eukaryotes.; GO: 0019799 tubulin N-acetyltransferase activity
Probab=35.16 E-value=50 Score=33.56 Aligned_cols=62 Identities=23% Similarity=0.362 Sum_probs=37.8
Q ss_pred eeccccccChhHHHHHHHHHHHhhcCceEEEEcchh-hhHHHhhhccCcEEccHHHHHhhhccceeeecC
Q 001460 945 TRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAIA-ELMHTWTRVFGFTSLEESLKQEMRSLNMLVFPG 1013 (1074)
Q Consensus 945 T~~~yRrQGmgR~Lv~aIE~~L~~LgVe~LvlpA~~-ea~~~Wt~kFGF~~m~~~~k~~~~~~~ll~FpG 1013 (1074)
+.+..||+|+|+.|++++.+.- .+....+-++-.. -+++|....+|.+.. .+...|.++|+|
T Consensus 54 Vhes~QR~G~Gk~LF~~ML~~e-~~~p~~~a~DrPS~Kll~Fl~Khy~L~~~------ipQ~NNFVVf~~ 116 (120)
T PF05301_consen 54 VHESRQRRGYGKRLFDHMLQEE-NVSPHQLAIDRPSPKLLSFLKKHYGLQRY------IPQSNNFVVFEG 116 (120)
T ss_pred EEeceeccCchHHHHHHHHHHc-CCCcccceecCCcHHHHHHHHHhcCCCcC------CCCCccEEEehH
Confidence 6678999999999999887752 2233344433332 345655555665443 233456777765
No 161
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=33.29 E-value=3.6 Score=33.39 Aligned_cols=40 Identities=33% Similarity=0.806 Sum_probs=24.3
Q ss_pred cccccccCC---C-CcEecCCCCCcCCCCCCCCcCCCCCCCCCCCcc
Q 001460 719 DTCGICGDG---G-DLICCDGCPSTFHQSCLDIQMLPPGDWHCPNCT 761 (1074)
Q Consensus 719 d~C~VCgdG---G-dLLcCD~CprafH~~CL~p~~vP~g~W~Cp~C~ 761 (1074)
|.|.+|.+. + .++... |...||..|+.....- .-.||.|+
T Consensus 1 d~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~~~~~--~~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFEDGEKVVKLP-CGHVFHRSCIKEWLKR--NNSCPVCR 44 (44)
T ss_dssp -CETTTTCBHHTTSCEEEET-TSEEEEHHHHHHHHHH--SSB-TTTH
T ss_pred CCCcCCChhhcCCCeEEEcc-CCCeeCHHHHHHHHHh--CCcCCccC
Confidence 468888752 3 344444 9999999999753211 13777774
No 162
>PRK04023 DNA polymerase II large subunit; Validated
Probab=33.18 E-value=29 Score=45.46 Aligned_cols=34 Identities=24% Similarity=0.607 Sum_probs=25.8
Q ss_pred cccccccccCCCCcEecCCCCCcCCCCCCCCcCCCCCCCCCCCcc
Q 001460 717 NDDTCGICGDGGDLICCDGCPSTFHQSCLDIQMLPPGDWHCPNCT 761 (1074)
Q Consensus 717 ndd~C~VCgdGGdLLcCD~CprafH~~CL~p~~vP~g~W~Cp~C~ 761 (1074)
....|..|+.......|..|... +...|+||.|.
T Consensus 625 g~RfCpsCG~~t~~frCP~CG~~-----------Te~i~fCP~CG 658 (1121)
T PRK04023 625 GRRKCPSCGKETFYRRCPFCGTH-----------TEPVYRCPRCG 658 (1121)
T ss_pred cCccCCCCCCcCCcccCCCCCCC-----------CCcceeCcccc
Confidence 45689999988877888888764 34458888885
No 163
>COG3818 Predicted acetyltransferase, GNAT superfamily [General function prediction only]
Probab=32.53 E-value=96 Score=32.37 Aligned_cols=51 Identities=18% Similarity=0.193 Sum_probs=41.0
Q ss_pred cccccChhHHHHHHHHHHHhhcCceEEEEcch----hhhHHHhhhccCcEEccHH
Q 001460 948 IYRRQGMCRRLFCALESALCSLKVEKLIIPAI----AELMHTWTRVFGFTSLEES 998 (1074)
Q Consensus 948 ~yRrQGmgR~Lv~aIE~~L~~LgVe~LvlpA~----~ea~~~Wt~kFGF~~m~~~ 998 (1074)
.-||.|++|+|.+-+-+.....|-.+|+|-.- .++-......|||+.+-..
T Consensus 95 ~aRGrG~aRalY~Dlf~~Ae~agy~~~tCEVn~DppnpasdaFHaalGF~eVG~a 149 (167)
T COG3818 95 RARGRGVARALYADLFSYAELAGYPYLTCEVNLDPPNPASDAFHAALGFHEVGQA 149 (167)
T ss_pred cccccchHHHHHHHHHHHHHhcCCceEEEEecCCCCChHHHHHhhhcCceEccce
Confidence 45899999999999999999999999987432 3455566668999998764
No 164
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=32.19 E-value=20 Score=32.89 Aligned_cols=30 Identities=33% Similarity=0.808 Sum_probs=25.9
Q ss_pred ccccccccCC-CCcEecCC--CCCcCCCCCCCC
Q 001460 718 DDTCGICGDG-GDLICCDG--CPSTFHQSCLDI 747 (1074)
Q Consensus 718 dd~C~VCgdG-GdLLcCD~--CprafH~~CL~p 747 (1074)
...|.+|+.. |-.+-|.. |...||..|.--
T Consensus 36 ~~~C~~C~~~~Ga~i~C~~~~C~~~fH~~CA~~ 68 (90)
T PF13771_consen 36 KLKCSICKKKGGACIGCSHPGCSRSFHVPCARK 68 (90)
T ss_pred CCCCcCCCCCCCeEEEEeCCCCCcEEChHHHcc
Confidence 4589999998 88888875 999999999854
No 165
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=31.92 E-value=30 Score=37.00 Aligned_cols=34 Identities=35% Similarity=0.904 Sum_probs=25.3
Q ss_pred ccccCCCCCCCCCCCCCCCcccccCCcchhhhhhhccccc
Q 001460 762 CKFCGLAGEDDAEGDDTTTSALLPCAMCEKKYHKLCMQEM 801 (1074)
Q Consensus 762 C~~Cg~~~~d~~eed~~s~~~Ll~CdQCer~YHv~CL~~~ 801 (1074)
|..|+..+.+ ...+.|++|.-|.-.||..||.+.
T Consensus 2 C~~C~~~g~~------~~kG~Lv~CQGCs~sYHk~CLG~R 35 (175)
T PF15446_consen 2 CDTCGYEGDD------RNKGPLVYCQGCSSSYHKACLGPR 35 (175)
T ss_pred cccccCCCCC------ccCCCeEEcCccChHHHhhhcCCc
Confidence 5667654432 234679999999999999999853
No 166
>smart00391 MBD Methyl-CpG binding domain. Methyl-CpG binding domain, also known as the TAM (TTF-IIP5, ARBP, MeCP1) domain
Probab=30.94 E-value=67 Score=29.98 Aligned_cols=36 Identities=28% Similarity=0.538 Sum_probs=28.5
Q ss_pred HhcCeeeeeccCCC---CCcccceeeCCCCceeeehHHH
Q 001460 404 VEAGWTIDYRPRKN---RDYLDAVYINPTGTAYWSIIKA 439 (1074)
Q Consensus 404 ~~agw~id~rpr~~---r~y~d~vy~~p~g~~~wsi~~a 439 (1074)
+-.||+=..+.|+. +.=.|.+|++|.|+..=|.-..
T Consensus 8 lp~GW~R~~~~r~~g~~~~~~dV~Y~sP~GkklRs~~ev 46 (77)
T smart00391 8 LPCGWRRETKQRKSGRSAGKFDVYYISPCGKKLRSKSEL 46 (77)
T ss_pred CCCCcEEEEEEecCCCCCCcccEEEECCCCCeeeCHHHH
Confidence 56799999988873 4568999999999988665443
No 167
>PF13880 Acetyltransf_13: ESCO1/2 acetyl-transferase
Probab=30.77 E-value=37 Score=31.48 Aligned_cols=26 Identities=27% Similarity=0.305 Sum_probs=21.8
Q ss_pred eeeeeeeccccccChhHHHHHHHHHH
Q 001460 940 MPFIGTRHIYRRQGMCRRLFCALESA 965 (1074)
Q Consensus 940 lPlvAT~~~yRrQGmgR~Lv~aIE~~ 965 (1074)
|.-|=|.+.+||||+.+.||+++-..
T Consensus 8 I~RIWV~~~~RR~GIAt~Lld~ar~~ 33 (70)
T PF13880_consen 8 ISRIWVSPSHRRKGIATRLLDAAREN 33 (70)
T ss_pred eEEEEeChhhhhhhHHHHHHHHHHHh
Confidence 34455789999999999999998876
No 168
>KOG2535 consensus RNA polymerase II elongator complex, subunit ELP3/histone acetyltransferase [Chromatin structure and dynamics; Transcription]
Probab=30.56 E-value=51 Score=38.85 Aligned_cols=65 Identities=12% Similarity=0.151 Sum_probs=42.3
Q ss_pred EEEEEEecCeeEEeeeeeee-ccccccChhHHHHHHHHHHHhh-cCceEEEEcchhhhHHHhhhccCcEEc
Q 001460 927 AASIRFHGTQLAEMPFIGTR-HIYRRQGMCRRLFCALESALCS-LKVEKLIIPAIAELMHTWTRVFGFTSL 995 (1074)
Q Consensus 927 aAsiRV~G~~~AElPlvAT~-~~yRrQGmgR~Lv~aIE~~L~~-LgVe~LvlpA~~ea~~~Wt~kFGF~~m 995 (1074)
+--++|+|. -+|+-+-. ..||.||||.+||++.|+.++. -|-.++-+=+--.....|. +|||..-
T Consensus 479 vRELHVYGs---~vpv~~rDp~KfQHQG~GtLLmeEAERIAr~EHgS~KiavISGVGtR~YY~-klGY~Ld 545 (554)
T KOG2535|consen 479 VRELHVYGS---VVPVHSRDPTKFQHQGFGTLLMEEAERIAREEHGSGKIAVISGVGTRNYYR-KLGYELD 545 (554)
T ss_pred heeeeecce---eeecccCCchhhhhcchhhHHHHHHHHHHHHhcCCCceEEEeccchHHHHH-hhCeeec
Confidence 344567773 33443333 3699999999999999999875 3445554444444555566 7999753
No 169
>smart00547 ZnF_RBZ Zinc finger domain. Zinc finger domain in Ran-binding proteins (RanBPs), and other proteins. In RanBPs, this domain binds RanGDP.
Probab=29.06 E-value=36 Score=24.89 Aligned_cols=9 Identities=78% Similarity=2.169 Sum_probs=7.3
Q ss_pred CCCCCCCcc
Q 001460 753 GDWHCPNCT 761 (1074)
Q Consensus 753 g~W~Cp~C~ 761 (1074)
++|.|+.|.
T Consensus 1 g~W~C~~C~ 9 (26)
T smart00547 1 GDWECPACT 9 (26)
T ss_pred CcccCCCCC
Confidence 579999885
No 170
>PF04377 ATE_C: Arginine-tRNA-protein transferase, C terminus; InterPro: IPR007472 Arginine-tRNA-protein transferase catalyses the post-translational conjugation of arginine to the N terminus of a protein. In eukaryotes, this functions as part of the N terminus rule pathway of protein degradation by conjugating a destabilising amino acid to the N-terminal aspartate or glutamate of a protein, targeting the protein for ubiquitin-dependent proteolysis. N-terminal cysteine is sometimes modified []. In Saccharomyces cerevisiae, Cys20, 23, 94 and/or 95 are thought to be important for activity []. Of these, only Cys 94 appears to be completely conserved in this family. This entry represents the C-terminal region of the enzyme arginine-tRNA-protein transferase, found in both eukaryotic and prokaryotic enzymes.; GO: 0004057 arginyltransferase activity, 0016598 protein arginylation
Probab=28.65 E-value=2.3e+02 Score=28.97 Aligned_cols=60 Identities=8% Similarity=-0.015 Sum_probs=47.7
Q ss_pred EEEEeeCCeEEEEEEEEEecCeeEEeeeeeeeccccccChhHHHHHHHHHHHhhcCceEEE
Q 001460 915 TAILERGDEIISAASIRFHGTQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLI 975 (1074)
Q Consensus 915 T~VLe~~devVsaAsiRV~G~~~AElPlvAT~~~yRrQGmgR~Lv~aIE~~L~~LgVe~Lv 975 (1074)
.+-...+|++|+||.+.+....+.-|-++= .|+|.....|...+-.-.+.++.+|.+.+.
T Consensus 41 ~~~~~~~~kLiav~v~D~l~~glSaVY~fy-DPd~~~~SlG~~~iL~eI~~a~~~~l~y~Y 100 (128)
T PF04377_consen 41 HLEYRLDGKLIAVAVVDILPDGLSAVYTFY-DPDYSKRSLGTYSILREIELARELGLPYYY 100 (128)
T ss_pred EEEEEeCCeEEEEEEeecccchhhheeeee-CCCccccCcHHHHHHHHHHHHHHcCCCEEe
Confidence 333448999999999998877666665543 578888888888777777888999999998
No 171
>PF07943 PBP5_C: Penicillin-binding protein 5, C-terminal domain; InterPro: IPR012907 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry contains proteins that are annotated as penicillin-binding protein 5 and 6. These belong to MEROPS peptidase family S11 (D-Ala-D-Ala carboxypeptidase A family, clan SE). Penicillin-binding protein 5 expressed by Escherichia coli functions as a D-alanyl-D-alanine carboxypeptidase. It is composed of two domains that are oriented at approximately right angles to each other. The N-terminal domain (IPR001967 from INTERPRO) is the catalytic domain. The C-terminal domain, this entry, is organised into a sandwich of two anti-parallel beta-sheets, and has a relatively hydrophobic surface as compared to the N-terminal domain. Its precise function is unknown; it may mediate interactions with other cell wall-synthesising enzymes, thus allowing the protein to be recruited to areas of active cell wall synthesis. It may also function as a linker domain that positions the active site in the catalytic domain closer to the peptidoglycan layer, to allow it to interact with cell wall peptides []. ; GO: 0009002 serine-type D-Ala-D-Ala carboxypeptidase activity, 0006508 proteolysis; PDB: 3A3J_A 3MFD_B 1XP4_D 3MZD_A 1NZU_A 1NJ4_A 1Z6F_A 3MZF_A 1NZO_A 3MZE_A ....
Probab=27.96 E-value=71 Score=29.13 Aligned_cols=28 Identities=11% Similarity=0.521 Sum_probs=24.1
Q ss_pred eCCeEEEEEEEEEecCeeEEeeeeeeec
Q 001460 920 RGDEIISAASIRFHGTQLAEMPFIGTRH 947 (1074)
Q Consensus 920 ~~devVsaAsiRV~G~~~AElPlvAT~~ 947 (1074)
.-|+.||.+.+.+-|..++++||+|...
T Consensus 61 ~kG~~vG~~~v~~~~~~i~~vpL~a~~~ 88 (91)
T PF07943_consen 61 KKGQVVGTLTVYLDGKLIGEVPLVASED 88 (91)
T ss_dssp GTTSEEEEEEEEETTEEEEEEEEEESS-
T ss_pred cCCCEEEEEEEEECCEEEEEEEEEECCc
Confidence 3479999999998899999999999864
No 172
>PLN02400 cellulose synthase
Probab=27.72 E-value=59 Score=43.15 Aligned_cols=45 Identities=31% Similarity=0.839 Sum_probs=34.3
Q ss_pred ccccccccccCC------C-CcEecCCCCCcCCCCCCCCcCCCCCCCCCCCcc
Q 001460 716 PNDDTCGICGDG------G-DLICCDGCPSTFHQSCLDIQMLPPGDWHCPNCT 761 (1074)
Q Consensus 716 ~ndd~C~VCgdG------G-dLLcCD~CprafH~~CL~p~~vP~g~W~Cp~C~ 761 (1074)
.+..+|.+|+|. | -.+-|..|.-..--.|+.- ..-+|.=.||.|+
T Consensus 34 ~~gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEY-ERkeGnq~CPQCk 85 (1085)
T PLN02400 34 LNGQICQICGDDVGVTETGDVFVACNECAFPVCRPCYEY-ERKDGTQCCPQCK 85 (1085)
T ss_pred cCCceeeecccccCcCCCCCEEEEEccCCCccccchhhe-ecccCCccCcccC
Confidence 356799999973 3 3889999987777777743 3567888999997
No 173
>PRK14852 hypothetical protein; Provisional
Probab=27.03 E-value=1.8e+02 Score=38.70 Aligned_cols=83 Identities=14% Similarity=0.179 Sum_probs=62.8
Q ss_pred EEEEeeCCeEEEEEEEEEe----------------------cCeeEEeeeeeeeccccccChhHHHHHHHHHHHhhcCce
Q 001460 915 TAILERGDEIISAASIRFH----------------------GTQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVE 972 (1074)
Q Consensus 915 T~VLe~~devVsaAsiRV~----------------------G~~~AElPlvAT~~~yRrQGmgR~Lv~aIE~~L~~LgVe 972 (1074)
++|+-..+++|+..++.+- |..++|+=-+|+.+..|.+=+--.|+..+-......++.
T Consensus 77 ~~i~k~~~~~l~T~t~~~ds~~~Gl~~D~lf~~eLd~lr~~Gr~v~EvtrLa~d~~~~~~~l~~~l~~~~~~y~~~~~~d 156 (989)
T PRK14852 77 VFIFKSYHDVLCTLTHIPDSGLFGLPMDTLYKPEVDALRAQGRNVVEVGALATQYSRRWTNLMVFLAKAMFQYSMMSEVD 156 (989)
T ss_pred EEEeccCCcEEEEEEEecCCcccCcCHHHHHHHHHHHHHHcCCeEEeeehheechhhcccchhHHHHHHHHHHHHHcCCC
Confidence 4555555666666665433 458999999999766665545556666665556678999
Q ss_pred EEEEcchhhhHHHhhhccCcEEccH
Q 001460 973 KLIIPAIAELMHTWTRVFGFTSLEE 997 (1074)
Q Consensus 973 ~LvlpA~~ea~~~Wt~kFGF~~m~~ 997 (1074)
.+++-..|.=..||++-|||+.+.+
T Consensus 157 d~~i~VnPkH~~FY~r~l~f~~ig~ 181 (989)
T PRK14852 157 DILVTVNPKHVKFYTDIFLFKPFGE 181 (989)
T ss_pred eEEEEECcchHHHHHHHhCCccccc
Confidence 9999999999999999999999964
No 174
>KOG1632 consensus Uncharacterized PHD Zn-finger protein [General function prediction only]
Probab=26.58 E-value=35 Score=39.79 Aligned_cols=60 Identities=20% Similarity=0.373 Sum_probs=39.6
Q ss_pred ccccCCcchhhhhhhc--cccccccccCCCCCccceeCCcchhhHHHHHhHhccccccccCcceee
Q 001460 782 ALLPCAMCEKKYHKLC--MQEMDALSDNLTGLVTSFCGRKCQELSEHLQKYLGVKHELEAGLSWSL 845 (1074)
Q Consensus 782 ~Ll~CdQCer~YHv~C--L~~~d~~p~~~~p~~~WFCs~~CkeI~e~LqklLgvk~eLEsg~SWtL 845 (1074)
.+..|+.|+.+||..| +.- .-.+..+...++| ..|......++..=+....+...++|.+
T Consensus 74 ~~~~cd~C~~~~~~ec~~v~~---~~~e~p~~~~~~c-~~c~~~~~~~~~~~~l~~~~~~~~~~~~ 135 (345)
T KOG1632|consen 74 LMEQCDLCEDWYHGECWEVGT---AEKEAPKEDPKVC-DECKEAQDGMSESDGLSCVCRQDDSELL 135 (345)
T ss_pred hhhccccccccccccccccCc---hhhcCCccccccc-cccchhhhhhhhhccceeeccccccccc
Confidence 4789999999999999 542 2223345578999 8999988777654333333334444443
No 175
>KOG2779 consensus N-myristoyl transferase [Lipid transport and metabolism]
Probab=26.11 E-value=4.8e+02 Score=31.37 Aligned_cols=93 Identities=14% Similarity=0.317 Sum_probs=70.2
Q ss_pred CcccccCcceEEEEeeCC--eEEE-----EEEEEEecC--eeEEeeeeeeeccccccChhHHHHHHHHHHHhhcCc----
Q 001460 905 FNRLNYSGFYTAILERGD--EIIS-----AASIRFHGT--QLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKV---- 971 (1074)
Q Consensus 905 FkRldF~GFYT~VLe~~d--evVs-----aAsiRV~G~--~~AElPlvAT~~~yRrQGmgR~Lv~aIE~~L~~LgV---- 971 (1074)
|..-++.-=|++.++... .+|+ -++|||.+. .+|||-|+-+.-.-|.+++.=.|+.+|-+...--||
T Consensus 126 l~~pg~~~~WHiGVRv~~s~kLVaFIsaiP~~irvrdk~vk~veINFLCVHKkLRSKRlaPvLIrEITRRvnl~gIfqA~ 205 (421)
T KOG2779|consen 126 LQPPGWKKEWHIGVRVKSSKKLVAFISAIPATIRVRDKVVKMVEINFLCVHKKLRSKRLAPVLIREITRRVNLEGIFQAA 205 (421)
T ss_pred hcCCCCccceEEEEEEecCCceEEEEeccccEEEEccceeeeeeEEEEEEehhhhccccccHHHHHHHHHhhhhhhhhHh
Confidence 344455566788877554 7777 368999998 899999999999999999999999998776544443
Q ss_pred --eEEEEcchhhhHHHhhhc--------cCcEEccH
Q 001460 972 --EKLIIPAIAELMHTWTRV--------FGFTSLEE 997 (1074)
Q Consensus 972 --e~LvlpA~~ea~~~Wt~k--------FGF~~m~~ 997 (1074)
--++||+.-+.-.-|.+. .||+.++.
T Consensus 206 yTaGvvLp~PVstcRY~HRsLNpkKL~dv~Fs~l~~ 241 (421)
T KOG2779|consen 206 YTAGVVLPKPVSTCRYWHRSLNPKKLIDVGFSHLSR 241 (421)
T ss_pred hhcceeeccccchhhhhhccCChhHeeEeccccccc
Confidence 336788777777777762 57777665
No 176
>PF00765 Autoind_synth: Autoinducer synthetase; InterPro: IPR001690 Bacterial species have many methods of controlling gene expression and cell growth. Regulation of gene expression in response to changes in cell density is termed quorum sensing [, ]. Quorum-sensing bacteria produce, release and respond to hormone-like molecules (autoinducers) that accumulate in the external environment as the cell population grows. Once a threshold of these molecules is reached, a signal transduction cascade is triggered that ultimately leads to behavioural changes in the bacterium []. Autoinducers are thus clearly important mediators of molecular communication. Conjugal transfer of Agrobacterium octopine-type Ti plasmids is activated by octopine, a metabolite released from plant tumours []. Octopine causes conjugal donors to secrete a pheromone, Agrobacterium autoinducer (AAI), and exogenous AAI further stimulates conjugation. The putative AAI synthase and an AAI-responsive transcriptional regulator have been found to be encoded by the Ti plasmid traI and traR genes, respectively. TraR and TraI are similar to the LuxR and LuxI regulatory proteins of Vibrio fischeri, and AAI is similar in structure to the diffusable V. fischeri autoinducer, the inducing ligand of LuxR. TraR activates target genes in the presence of AAI and also activates traR and traI themselves, creating two positive-feedback loops. TraR-AAI-mediated activation in wild-type Agrobacterium strains is enhanced by culturing on solid media, suggesting a possible role in cell density sensing []. Production of light by the marine bacterium V. fischeri and by recombinant hosts containing cloned lux genes is controlled by the density of the culture []. Density-dependent regulation of lux gene expression has been shown to require a locus consisting of the luxR and luxI genes. In these and other Gram-negative bacteria, N-(3-oxohexanoyl)-L-homoserine lactone (OHHL) acts as the autoinducer by binding to transcriptional regulatory proteins and activating them []. OHHL and related molecules, such as N-butanoyl- (BHL), N-hexanoyl- (HHL) and N-oxododecanoyl- (PAI) homoserine lactones, are produced by a family of proteins that share a high level of sequence similarity. Proteins which currently members of this family include: luxI from V. fischeri. ahyI and asaI from Aeromonas species, which synthesize BHL and whose targets are ahyR and asaR respectively. carI from Erwinia carotovora. The target of OHHL is carR which activates genes involved in the biosynthesis of carbapenem antibiotics. eagI from Enterobacter agglomerans. The target of OHHL is not yet known. esaI from Erwinia stewartii. expI from Erwinia carotovora. lasI from Pseudomonas aeruginosa, which synthesizes PAI and whose target is lasR which activates the transcription of the elastase gene. rhlI (or vsmI) from P. aeruginosa, which synthesizes BHL and HHL and whose target is rhlR. swrI from Serratia liquefaciens, which synthesizes BHL. yenI from Yersinia enterocolitica. ; GO: 0007165 signal transduction; PDB: 3P2H_A 3P2F_A 1KZF_A 1K4J_A 1RO5_A.
Probab=25.93 E-value=3.6e+02 Score=28.76 Aligned_cols=93 Identities=11% Similarity=0.122 Sum_probs=63.0
Q ss_pred CCCCcccc-cCcceEEEEeeCCeEEEEEEEEE--------------e-------cCeeEEeeeeeeeccccc------cC
Q 001460 902 GSNFNRLN-YSGFYTAILERGDEIISAASIRF--------------H-------GTQLAEMPFIGTRHIYRR------QG 953 (1074)
Q Consensus 902 GSnFkRld-F~GFYT~VLe~~devVsaAsiRV--------------~-------G~~~AElPlvAT~~~yRr------QG 953 (1074)
|-++..+| ..-.|.+++.. |+|+|++-|-= + +.++-|+==|++.++..+ --
T Consensus 34 g~E~DqyD~~~~~ylv~~~~-g~v~g~~RLlptt~p~ML~~~F~~ll~~~~~p~~~~vwE~SRf~v~~~~~~~~~~~~~~ 112 (182)
T PF00765_consen 34 GMEIDQYDDPDAVYLVALDD-GRVVGCARLLPTTGPYMLSDVFPHLLPDGPAPRSPDVWELSRFCVDPDRRRSRAGSRSP 112 (182)
T ss_dssp SEE--TTGCTT-EEEEEEET-TEEEEEEEEEETTS--HHHHCTGGGHTTS---SSTTEEEEEEEEE-HCCCHHCHSCC-T
T ss_pred CcEeeecCCCCCeEEEEEEC-CEEEEEeeeccCCCcchhhhHHHHHhCCCCCCCCCcceeeeEEEEcccccccccccccH
Confidence 44455555 45678877765 99998875531 1 136778877888777432 13
Q ss_pred hhHHHHHHHHHHHhhcCceEEEEcchhhhHHHhhhccCcEEcc
Q 001460 954 MCRRLFCALESALCSLKVEKLIIPAIAELMHTWTRVFGFTSLE 996 (1074)
Q Consensus 954 mgR~Lv~aIE~~L~~LgVe~LvlpA~~ea~~~Wt~kFGF~~m~ 996 (1074)
+...|+.++-+...+.|++.++.-+..-...++. ++||..-.
T Consensus 113 ~~~~L~~~~~e~a~~~gi~~~v~V~~~~~~r~l~-r~G~~~~~ 154 (182)
T PF00765_consen 113 VTMELLLGMVEFALSNGIRHIVGVVDPAMERILR-RAGWPVRR 154 (182)
T ss_dssp HHHHHHHHHHHHHHCTT-SEEEEEEEHHHHHHHH-HCT-EEEE
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEEEChHHHHHHH-HcCCceEE
Confidence 6789999999999999999999888777777777 58987643
No 177
>COG5027 SAS2 Histone acetyltransferase (MYST family) [Chromatin structure and dynamics]
Probab=25.61 E-value=32 Score=40.37 Aligned_cols=25 Identities=28% Similarity=0.243 Sum_probs=20.8
Q ss_pred eeEEeeeeeeeccccccChhHHHHH
Q 001460 936 QLAEMPFIGTRHIYRRQGMCRRLFC 960 (1074)
Q Consensus 936 ~~AElPlvAT~~~yRrQGmgR~Lv~ 960 (1074)
+---|--|-|.|.|||.|+|..|++
T Consensus 261 ~~yNLaCILtLP~yQRrGYG~lLId 285 (395)
T COG5027 261 QDYNLACILTLPPYQRRGYGKLLID 285 (395)
T ss_pred ccCceEEEEecChhHhcccceEeee
Confidence 3345778899999999999999975
No 178
>PF00641 zf-RanBP: Zn-finger in Ran binding protein and others; InterPro: IPR001876 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the zinc finger domain found in RanBP2 proteins. Ran is an evolutionary conserved member of the Ras superfamily that regulates all receptor-mediated transport between the nucleus and the cytoplasm. Ran binding protein 2 (RanBP2) is a 358kDa nucleoporin located on the cytoplasmic side of the nuclear pore complex which plays a role in nuclear protein import []. RanBP2 contains multiple zinc fingers which mediate binding to RanGDP []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9G_A 2EBR_A 2WX0_C 2WX1_C 2WWZ_C 3GJ6_B 2LK0_A 2LK1_A 3GJ5_B 3GJ8_B ....
Probab=25.36 E-value=27 Score=26.59 Aligned_cols=10 Identities=70% Similarity=1.982 Sum_probs=8.3
Q ss_pred CCCCCCCCcc
Q 001460 752 PGDWHCPNCT 761 (1074)
Q Consensus 752 ~g~W~Cp~C~ 761 (1074)
.|+|.|+.|.
T Consensus 2 ~g~W~C~~C~ 11 (30)
T PF00641_consen 2 EGDWKCPSCT 11 (30)
T ss_dssp SSSEEETTTT
T ss_pred CcCccCCCCc
Confidence 5789999886
No 179
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=25.20 E-value=35 Score=42.28 Aligned_cols=36 Identities=19% Similarity=0.506 Sum_probs=24.0
Q ss_pred CCCCCCCcc-----------ccccCCCCCCCCCCCCCCCcccccCCcchhhhhhhccc
Q 001460 753 GDWHCPNCT-----------CKFCGLAGEDDAEGDDTTTSALLPCAMCEKKYHKLCMQ 799 (1074)
Q Consensus 753 g~W~Cp~C~-----------C~~Cg~~~~d~~eed~~s~~~Ll~CdQCer~YHv~CL~ 799 (1074)
..|||+.|. |..|+...... -.|+.|++.|++.++.
T Consensus 125 ~~~Yc~~~e~fl~dr~v~g~cp~cg~~~arG-----------D~Ce~Cg~~~~P~~l~ 171 (558)
T COG0143 125 EGLYCVSCERFLPDRYVEGTCPKCGGEDARG-----------DQCENCGRTLDPTELI 171 (558)
T ss_pred eeeEcccccccccchheeccCCCcCccccCc-----------chhhhccCcCCchhcC
Confidence 347777775 66776332211 2699999999998864
No 180
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=24.84 E-value=52 Score=41.51 Aligned_cols=41 Identities=27% Similarity=0.740 Sum_probs=21.0
Q ss_pred ccccccCC--CCcEecCCCCCcCC-CCCCCC-cCCCCCCCCCCCc
Q 001460 720 TCGICGDG--GDLICCDGCPSTFH-QSCLDI-QMLPPGDWHCPNC 760 (1074)
Q Consensus 720 ~C~VCgdG--GdLLcCD~CprafH-~~CL~p-~~vP~g~W~Cp~C 760 (1074)
.|..|+.. ....+|..|..... ..|..- ..+|.+.=||+.|
T Consensus 3 ~Cp~Cg~~n~~~akFC~~CG~~l~~~~Cp~CG~~~~~~~~fC~~C 47 (645)
T PRK14559 3 ICPQCQFENPNNNRFCQKCGTSLTHKPCPQCGTEVPVDEAHCPNC 47 (645)
T ss_pred cCCCCCCcCCCCCccccccCCCCCCCcCCCCCCCCCccccccccc
Confidence 47777643 34667777766542 333332 1244444455544
No 181
>KOG1080 consensus Histone H3 (Lys4) methyltransferase complex, subunit SET1 and related methyltransferases [Chromatin structure and dynamics; Transcription]
Probab=24.83 E-value=78 Score=41.92 Aligned_cols=55 Identities=27% Similarity=0.750 Sum_probs=41.0
Q ss_pred cccccccCCC-----CcEecCCCCCcCCCCCCCCcCC-CCCCCCCCCcc-------ccccCCCCCCCC
Q 001460 719 DTCGICGDGG-----DLICCDGCPSTFHQSCLDIQML-PPGDWHCPNCT-------CKFCGLAGEDDA 773 (1074)
Q Consensus 719 d~C~VCgdGG-----dLLcCD~CprafH~~CL~p~~v-P~g~W~Cp~C~-------C~~Cg~~~~d~~ 773 (1074)
+.|.+|.+.. ..+.|+.|.+.-|..|++.... ....|.|..|. |..|-.+++...
T Consensus 574 ~~c~~~~~~~~~~~n~~~~~~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~g~al~ 641 (1005)
T KOG1080|consen 574 ERCAVCRDDEDWEKNVSIICDRCTRSVHSECYGNLKSYDGTSWVCDSCETLDIKRSCCLCPVKGGALK 641 (1005)
T ss_pred ccccccccccccccceeeeeccccccCCCcccccCCCCCCCcchhhccccccCCchhhhccccCcccC
Confidence 5799998643 3888999999999999997544 44579999997 445655554433
No 182
>KOG2752 consensus Uncharacterized conserved protein, contains N-recognin-type Zn-finger [General function prediction only]
Probab=24.40 E-value=46 Score=38.66 Aligned_cols=22 Identities=36% Similarity=0.880 Sum_probs=18.6
Q ss_pred CcccccCCcchhhhh-hhccccc
Q 001460 780 TSALLPCAMCEKKYH-KLCMQEM 801 (1074)
Q Consensus 780 ~~~Ll~CdQCer~YH-v~CL~~~ 801 (1074)
...|++|..|+-||| ..|++..
T Consensus 145 e~~m~QC~iCEDWFHce~c~~~~ 167 (345)
T KOG2752|consen 145 EGEMLQCVICEDWFHCEGCMQAK 167 (345)
T ss_pred cceeeeEEeccchhcccccCccc
Confidence 356899999999999 8998753
No 183
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=23.03 E-value=21 Score=27.36 Aligned_cols=40 Identities=30% Similarity=0.672 Sum_probs=25.5
Q ss_pred cccccCCC-CcEecCCCCCcCCCCCCCCcCCCCCCCCCCCcc
Q 001460 721 CGICGDGG-DLICCDGCPSTFHQSCLDIQMLPPGDWHCPNCT 761 (1074)
Q Consensus 721 C~VCgdGG-dLLcCD~CprafH~~CL~p~~vP~g~W~Cp~C~ 761 (1074)
|.+|.+.- +.+....|...||..|+.... ..+...||.|.
T Consensus 2 C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~-~~~~~~Cp~C~ 42 (45)
T cd00162 2 CPICLEEFREPVVLLPCGHVFCRSCIDKWL-KSGKNTCPLCR 42 (45)
T ss_pred CCcCchhhhCceEecCCCChhcHHHHHHHH-HhCcCCCCCCC
Confidence 77777654 444455688899999986421 11456677664
No 184
>PLN03086 PRLI-interacting factor K; Provisional
Probab=22.89 E-value=27 Score=43.26 Aligned_cols=100 Identities=23% Similarity=0.624 Sum_probs=0.0
Q ss_pred eeeCCCCceeecceeeeccCCccccCceeEeccCCcchhhhhHHhhhccccccccCCcccCCCCCCcccccccc--cc--
Q 001460 650 IHCGCCSKILTVSKFEIHAGSKLRQPFQNIYLDSGVSLLQCQIDAWNKLKESESIGFESVDVDGDDPNDDTCGI--CG-- 725 (1074)
Q Consensus 650 I~C~CC~kvfS~SeFE~HAG~k~r~Py~nI~L~~G~SLldCqI~aw~~q~~sEk~G~~~v~~d~dd~ndd~C~V--Cg-- 725 (1074)
+.|+.|...+....|+.|. ...+|.+| .|.. |+
T Consensus 408 V~C~NC~~~i~l~~l~lHe---~~C~r~~V----------------------------------------~Cp~~~Cg~v 444 (567)
T PLN03086 408 VECRNCKHYIPSRSIALHE---AYCSRHNV----------------------------------------VCPHDGCGIV 444 (567)
T ss_pred EECCCCCCccchhHHHHHH---hhCCCcce----------------------------------------eCCcccccce
Q ss_pred ----CCCCcEecCCCCCcCCCCCCCC-cCCCCCCCCCCCcc----------------------ccccCCCCC--------
Q 001460 726 ----DGGDLICCDGCPSTFHQSCLDI-QMLPPGDWHCPNCT----------------------CKFCGLAGE-------- 770 (1074)
Q Consensus 726 ----dGGdLLcCD~CprafH~~CL~p-~~vP~g~W~Cp~C~----------------------C~~Cg~~~~-------- 770 (1074)
+..+.+.|+.|+..|...=+.- ...-...-.|+ |. |.+|+....
T Consensus 445 ~~r~el~~H~~C~~Cgk~f~~s~LekH~~~~Hkpv~Cp-Cg~~~~R~~L~~H~~thCp~Kpi~C~fC~~~v~~g~~~~d~ 523 (567)
T PLN03086 445 LRVEEAKNHVHCEKCGQAFQQGEMEKHMKVFHEPLQCP-CGVVLEKEQMVQHQASTCPLRLITCRFCGDMVQAGGSAMDV 523 (567)
T ss_pred eeccccccCccCCCCCCccchHHHHHHHHhcCCCccCC-CCCCcchhHHHhhhhccCCCCceeCCCCCCccccCccccch
Q ss_pred -----CCCCCCCCCCcccccCCcchhhh
Q 001460 771 -----DDAEGDDTTTSALLPCAMCEKKY 793 (1074)
Q Consensus 771 -----d~~eed~~s~~~Ll~CdQCer~Y 793 (1074)
...+-...-......|+.|.+.+
T Consensus 524 ~d~~s~Lt~HE~~CG~rt~~C~~Cgk~V 551 (567)
T PLN03086 524 RDRLRGMSEHESICGSRTAPCDSCGRSV 551 (567)
T ss_pred hhhhhhHHHHHHhcCCcceEccccCCee
No 185
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=22.27 E-value=36 Score=43.33 Aligned_cols=42 Identities=24% Similarity=0.635 Sum_probs=31.8
Q ss_pred CCCCCCCCCCCcc------ccccCCCCCCCCCCCCCCCcccccCCcchhhhhhhcccc
Q 001460 749 MLPPGDWHCPNCT------CKFCGLAGEDDAEGDDTTTSALLPCAMCEKKYHKLCMQE 800 (1074)
Q Consensus 749 ~vP~g~W~Cp~C~------C~~Cg~~~~d~~eed~~s~~~Ll~CdQCer~YHv~CL~~ 800 (1074)
++-.+.|+|..|. |.+|+..-. +..+.|.+|++.=|..|+..
T Consensus 763 ~~~~~~~~c~rc~s~a~~~CtVC~~vi~----------G~~~~c~~C~H~gH~sh~~s 810 (839)
T KOG0269|consen 763 MVLTKLWQCDRCESRASAKCTVCDLVIR----------GVDVWCQVCGHGGHDSHLKS 810 (839)
T ss_pred cccccceeechHHHHhhcCceeecceee----------eeEeecccccccccHHHHHH
Confidence 3444459999996 888865432 34689999999999999875
No 186
>PF05687 DUF822: Plant protein of unknown function (DUF822); InterPro: IPR008540 This group of proteins contains members of the BZR1/LAT61 family of plant transcriptional repressors involved in controlling the response to Brassinosteroids (BRs). BRs are plant hormones that play essential roles in growth and development. BZR1 binds directly to DNA repressing the synthesis of genes involved in BR synthesis. Phosphorylation of BZR1 by BIN1 targets BZR1 to the 20S proteosome, while dephosphorylation leads to nuclear accumulation of BZR1 [].
Probab=22.15 E-value=69 Score=33.60 Aligned_cols=24 Identities=42% Similarity=0.872 Sum_probs=18.9
Q ss_pred HHHHHHHHHHhcCeeeeeccCCCCCcccceeeCCCCceee
Q 001460 395 LRERIRGMLVEAGWTIDYRPRKNRDYLDAVYINPTGTAYW 434 (1074)
Q Consensus 395 ~~~~i~~~l~~agw~id~rpr~~r~y~d~vy~~p~g~~~w 434 (1074)
+-|-++.+-.+|||+|+ |+||+|=
T Consensus 47 ~NeVLkALc~eAGw~Ve----------------~DGTtyr 70 (150)
T PF05687_consen 47 NNEVLKALCREAGWTVE----------------PDGTTYR 70 (150)
T ss_pred HHHHHHHHHHhCCEEEc----------------cCCCeec
Confidence 44667777789999864 8999986
No 187
>PHA02929 N1R/p28-like protein; Provisional
Probab=22.14 E-value=37 Score=37.89 Aligned_cols=43 Identities=28% Similarity=0.593 Sum_probs=26.9
Q ss_pred cccccccccCCCC--------cEecCCCCCcCCCCCCCCcCCCCCCCCCCCcc
Q 001460 717 NDDTCGICGDGGD--------LICCDGCPSTFHQSCLDIQMLPPGDWHCPNCT 761 (1074)
Q Consensus 717 ndd~C~VCgdGGd--------LLcCD~CprafH~~CL~p~~vP~g~W~Cp~C~ 761 (1074)
.+..|.+|.+.-. +..-..|...||..|+..... ..=.||.|+
T Consensus 173 ~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~--~~~tCPlCR 223 (238)
T PHA02929 173 KDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKK--EKNTCPVCR 223 (238)
T ss_pred CCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHh--cCCCCCCCC
Confidence 4678999987411 122346889999999975321 112577665
No 188
>PRK10001 D-alanyl-D-alanine carboxypeptidase fraction C; Provisional
Probab=22.12 E-value=1.6e+02 Score=35.13 Aligned_cols=46 Identities=11% Similarity=0.353 Sum_probs=38.7
Q ss_pred eCCeEEEEEEEEEecCeeEEeeeeeeeccccccChhHHHHHHHHHHH
Q 001460 920 RGDEIISAASIRFHGTQLAEMPFIGTRHIYRRQGMCRRLFCALESAL 966 (1074)
Q Consensus 920 ~~devVsaAsiRV~G~~~AElPlvAT~~~yRrQGmgR~Lv~aIE~~L 966 (1074)
..|+.|+-..|...|..++++|++|+.. ...-|+.+++...|...+
T Consensus 346 ~kG~~vG~~~i~~~g~~i~~v~lva~~~-v~~~~~~~~~~~~~~~~~ 391 (400)
T PRK10001 346 KKGQVVGTIDFQLNGKSIEQRPLIVMEN-VEEGGFFSRMWDFVMMKF 391 (400)
T ss_pred cCCCEEEEEEEEECCEEEEEEEeEECCc-ccccCHHHHHHHHHHHHH
Confidence 4578999999999999999999999855 577899999888877654
No 189
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=21.93 E-value=75 Score=42.20 Aligned_cols=56 Identities=29% Similarity=0.689 Sum_probs=39.5
Q ss_pred ccccccccccCC------CC-cEecCCCCCcCCCCCCCCcCCCCCCCCCCCcc-----ccccCCCCCCC
Q 001460 716 PNDDTCGICGDG------GD-LICCDGCPSTFHQSCLDIQMLPPGDWHCPNCT-----CKFCGLAGEDD 772 (1074)
Q Consensus 716 ~ndd~C~VCgdG------Gd-LLcCD~CprafH~~CL~p~~vP~g~W~Cp~C~-----C~~Cg~~~~d~ 772 (1074)
.+..+|.+|||. |+ .+-|..|.=..--.|+.- ...+|.=.||.|. ++-|....+|.
T Consensus 15 ~~~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEY-Er~eG~q~CPqCktrYkr~kgsprv~gDe 82 (1079)
T PLN02638 15 GGGQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEY-ERKDGNQSCPQCKTKYKRHKGSPAILGDE 82 (1079)
T ss_pred cCCceeeecccccCcCCCCCEEEEeccCCCccccchhhh-hhhcCCccCCccCCchhhhcCCCCcCccc
Confidence 356699999973 33 788999987777777743 3567888899997 55555555543
No 190
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=21.40 E-value=45 Score=35.97 Aligned_cols=20 Identities=25% Similarity=0.836 Sum_probs=17.1
Q ss_pred cccccCCcchhhhhhhcccc
Q 001460 781 SALLPCAMCEKKYHKLCMQE 800 (1074)
Q Consensus 781 ~~Ll~CdQCer~YHv~CL~~ 800 (1074)
.....|..|..-||..|...
T Consensus 170 ~~~~~C~~C~~v~H~~C~~~ 189 (202)
T PF13901_consen 170 DTTVRCPKCKSVFHKSCFRK 189 (202)
T ss_pred CCeeeCCcCccccchhhcCC
Confidence 35789999999999999873
No 191
>KOG1701 consensus Focal adhesion adaptor protein Paxillin and related LIM proteins [Signal transduction mechanisms]
Probab=20.82 E-value=16 Score=43.59 Aligned_cols=68 Identities=26% Similarity=0.533 Sum_probs=42.8
Q ss_pred ccccccCC--CCcEecCCCCCcCCCCCCCC---------cC--CCCCCCCCCCcc------ccccCCCCCCCCCCCCCCC
Q 001460 720 TCGICGDG--GDLICCDGCPSTFHQSCLDI---------QM--LPPGDWHCPNCT------CKFCGLAGEDDAEGDDTTT 780 (1074)
Q Consensus 720 ~C~VCgdG--GdLLcCD~CprafH~~CL~p---------~~--vP~g~W~Cp~C~------C~~Cg~~~~d~~eed~~s~ 780 (1074)
.|.-|+.+ |+-.-|..=++.||..|..- .. .-++.-||..|- |..|+...-+
T Consensus 276 iC~~C~K~V~g~~~ac~Am~~~fHv~CFtC~~C~r~L~Gq~FY~v~~k~~CE~cyq~tlekC~~Cg~~I~d--------- 346 (468)
T KOG1701|consen 276 ICAFCHKTVSGQGLAVEAMDQLFHVQCFTCRTCRRQLAGQSFYQVDGKPYCEGCYQDTLEKCNKCGEPIMD--------- 346 (468)
T ss_pred hhhhcCCcccCcchHHHHhhhhhcccceehHhhhhhhccccccccCCcccchHHHHHHHHHHhhhhhHHHH---------
Confidence 89999863 56666777788899888742 11 224556777773 7777654321
Q ss_pred cccccCCcchhhhhhhccc
Q 001460 781 SALLPCAMCEKKYHKLCMQ 799 (1074)
Q Consensus 781 ~~Ll~CdQCer~YHv~CL~ 799 (1074)
.+=..|.+.||..|..
T Consensus 347 ---~iLrA~GkayHp~CF~ 362 (468)
T KOG1701|consen 347 ---RILRALGKAYHPGCFT 362 (468)
T ss_pred ---HHHHhcccccCCCceE
Confidence 1113477889988854
No 192
>cd00716 creatine_kinase_like Phosphagen (guanidino) kinases such as creatine kinase and similar enzymes. Eukaryotic creatine kinase-like phosphagen (guanidino) kinases are enzymes that transphosphorylate a high energy phosphoguanidino compound, like phosphocreatine (PCr) in the case of creatine kinase (CK), which is used as an energy-storage and -transport metabolite, to ADP, thereby creating ATP. The substrate binding site is located in the cleft between the N and C-terminal domains, but most of the catalytic residues are found in the larger C-terminal domain. In higher eukaryotes, CKs are found as tissue-specific (muscle, brain), as well as compartment-specific (mitochondrial, cytosolic, and flagellar) isoforms. Mitochondrial and cytoplasmic CKs are dimeric or octameric, while the flagellar isoforms are trimers with three CD domains fused as a single protein chain. CKs are either coupled to glycolysis (cytosolic form) or oxidative phosphorylation (mitochondrial form). Besides CK, one
Probab=20.29 E-value=1.1e+02 Score=36.25 Aligned_cols=88 Identities=14% Similarity=0.178 Sum_probs=53.4
Q ss_pred chhhhHHHhhhhccccccccc-CCCCcccchhhhccCCCCcccccCcceEEEEeeCCeEEEEEEEEEecCeeEEeeeeee
Q 001460 867 NSKLAVALNVMDECFLPIVDR-RSGINLIHNVLYNSGSNFNRLNYSGFYTAILERGDEIISAASIRFHGTQLAEMPFIGT 945 (1074)
Q Consensus 867 nSKLAvALtIm~ECF~PIvD~-rTGrDLIpdmVYn~GSnFkRldF~GFYT~VLe~~devVsaAsiRV~G~~~AElPlvAT 945 (1074)
.+--+.+-.+|.+.|+|||+. +.|.+-.+.... +|+.-+..+ . ..++.+|=...||+ ++.++.+||-..
T Consensus 60 ~A~D~esY~~F~~lfdpvI~~~H~g~~~~~~h~~----d~~~~~l~~---~--~~d~~~VlSsRVRl-aRNl~g~~Fpp~ 129 (357)
T cd00716 60 VAGDEESYEVFKDLFDPVIDERHGGYKPTAKHPT----DLDPTKLKG---G--QFDPKYVLSSRVRT-GRSIRGFCLPPH 129 (357)
T ss_pred ecCCHHHHHHHHHHhHHHHHHHccCCCCCccccC----CCChhhcCC---C--CCCCCeEEEeEEEe-eeecCCCCCCcc
Confidence 345567889999999999876 344332211111 111111111 0 12345666677886 789999999888
Q ss_pred eccccccChhHHHHHHHHH
Q 001460 946 RHIYRRQGMCRRLFCALES 964 (1074)
Q Consensus 946 ~~~yRrQGmgR~Lv~aIE~ 964 (1074)
...-++.-+-+.+..+++.
T Consensus 130 ls~~er~~ve~~v~~al~~ 148 (357)
T cd00716 130 CSRAERREVEKIAVEALAS 148 (357)
T ss_pred CCHHHHHHHHHHHHHHHHh
Confidence 8888877666666666644
Done!