Query 001460
Match_columns 1074
No_of_seqs 342 out of 1615
Neff 4.0
Searched_HMMs 29240
Date Tue Mar 26 17:20:15 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001460.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_760-764//hhsearch_pdb/001460hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ask_A E3 ubiquitin-protein li 1.0 1 1 142.1 6.5 135 608-761 65-223 (226)
2 2ysm_A Myeloid/lymphoid or mix 1.0 1 1 128.1 7.0 94 715-822 4-103 (111)
3 2kwj_A Zinc finger protein DPF 1.0 1 1 127.1 3.0 93 719-825 2-110 (114)
4 4gne_A Histone-lysine N-methyl 1.0 1 1 126.3 4.9 91 712-819 9-101 (107)
5 3v43_A Histone acetyltransfera 1.0 1 1 120.6 2.8 92 717-821 4-110 (112)
6 2lbm_A Transcriptional regulat 1.0 1 1 105.7 2.6 100 642-763 9-117 (142)
7 3u5n_A E3 ubiquitin-protein li 1.0 1 1 104.4 3.9 50 713-762 2-53 (207)
8 3o36_A Transcription intermedi 1.0 1 1 101.5 4.5 48 716-763 2-51 (184)
9 2ro1_A Transcription intermedi 1.0 1 1 94.3 4.5 47 717-763 1-49 (189)
10 1fp0_A KAP-1 corepressor; PHD 1.0 1 1 94.0 5.2 49 714-762 21-71 (88)
No 1
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=1.00 E-value=1 Score=142.14 Aligned_cols=135 Identities=26% Similarity=0.459 Sum_probs=90.2
Q ss_pred CCCCHHHHHHHCCCCEEECCEEEEEECCCCCCEEEEEEECCCEEECCCCCEEECCEEEECCCCCCCCCCEEEECCCCCCH
Q ss_conf 77511345442038200046499740456530112156239902077783220210233148754567524761698440
Q 001460 608 AGKLTLLSWLIDSGTVQLSQKVQYMNRRRTKVMLEGWITRDGIHCGCCSKILTVSKFEIHAGSKLRQPFQNIYLDSGVSL 687 (1074)
Q Consensus 608 ~~kRTVLSwLID~G~v~~~~kV~Y~n~~~~~~lLeG~it~~GI~C~CC~kvfS~SeFE~HAG~k~rkPy~nI~L~~G~SL 687 (1074)
+++|+.+.| .-+..+.++|+|++...+..+|+|+.+-| .......+.++++++|+|+ |.+|
T Consensus 65 prar~~~~~-----~~l~~g~~vm~nyn~~~~~~~G~~y~~~I-------------~~~~~~r~~~~~~a~i~l~-g~sl 125 (226)
T 3ask_A 65 ARARTIIKW-----QDLEVGQVVMLNYNPDNPKERGFWYDAEI-------------SRKRETRTARELYANVVLG-DDSL 125 (226)
T ss_dssp ECCCCBCCG-----GGCCTTCEEEEEECTTSTTSCCEEEEEEE-------------EEEEECSSCEEEEEEEECS-SSEE
T ss_pred CCCCCCCCC-----CCCCCCCEEEEECCCCCCCCCCCEEEHHH-------------HHHHHCCCCCCEEEEEEEC-CCCC
T ss_conf 130024780-----01564729998346688553673542554-------------3134023312224688766-8754
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCC--CCC----------------CCCCCCCCC---CCCCEECCCCCCCCCCCCCC
Q ss_conf 134477420022222369865677888--866----------------642321167---89727408999967899787
Q 001460 688 LQCQIDAWNKLKESESIGFESVDVDGD--DPN----------------DDTCGICGD---GGDLICCDGCPSTFHQSCLD 746 (1074)
Q Consensus 688 leC~I~aw~~q~~sEk~G~~~V~~dgd--d~n----------------dd~C~VCgd---GGeLLcCD~CprafH~~CL~ 746 (1074)
.+|++.+.++.+.+|..+..+...+.. ..+ +..|.+|+. +++||+||+|+++||++||+
T Consensus 126 ~~c~i~f~~e~~~ie~~~~~~~~~~~~~~r~~~~~C~~c~~~~~w~C~~c~C~vC~~~~~~~~lL~CD~C~~~yH~~CL~ 205 (226)
T 3ask_A 126 NDCRIIFVDEVFKIERPGEGSPMVDNPMRRKSGPSCKHCKDDVNRLCRVCACHLCGGRQDPDKQLMCDECDMAFHIYCLD 205 (226)
T ss_dssp EEEEESCTTCCBCCCCSSSSCCCCSCCCCCCCSCCCTTTTTCTTSCCTTTSCSSSCCCCC--CCEECSSSCCEECSCC--
T ss_pred CCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCEEECCCCCCCEECCCCC
T ss_conf 34157873143321133555333346333457864432357867766888886889979998768838999410075678
Q ss_pred CC--CCCCC-CCCCCCCC
Q ss_conf 76--78999-97788964
Q 001460 747 IQ--MLPPG-DWHCPNCT 761 (1074)
Q Consensus 747 l~--~vP~g-~W~Cp~C~ 761 (1074)
|+ .+|.| +|+|+.|.
T Consensus 206 PPL~~vP~G~~W~Cp~C~ 223 (226)
T 3ask_A 206 PPLSSVPSEDEWYCPECR 223 (226)
T ss_dssp CCCCSCCSSSCCCCGGGC
T ss_pred CCCCCCCCCCCCCCCCCC
T ss_conf 874569899887893874
No 2
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=128.08 Aligned_cols=94 Identities=35% Similarity=0.892 Sum_probs=77.4
Q ss_pred CCCCCCCCCCCCCCCC---EECCCCCCCCCCCCCCCCC--CCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 8666423211678972---7408999967899787767--899997788964-333689899998898898865103775
Q 001460 715 DPNDDTCGICGDGGDL---ICCDGCPSTFHQSCLDIQM--LPPGDWHCPNCT-CKFCGLAGEDDAEGDDTTTSALLPCAM 788 (1074)
Q Consensus 715 d~ndd~C~VCgdGGeL---LcCD~CprafH~~CL~l~~--vP~g~W~Cp~C~-C~~Cg~~~~ds~eed~~s~~~Ll~CdQ 788 (1074)
..|++.|.+|+++|++ |+|+.|+++||+.|++++. ++.+.|+|+.|. |.+|+....+ ..++.|++
T Consensus 4 ~~~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~~C~~C~~~~~~---------~~ll~Cd~ 74 (111)
T 2ysm_A 4 GSSGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECKVCQNCKQSGED---------SKMLVCDT 74 (111)
T ss_dssp CCCCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTCCCTTTCCCSCC---------TTEEECSS
T ss_pred CCCCCCCCCCCCCCCCCCCEECCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---------CCEEECCC
T ss_conf 899799957899888758859999997739677088655445668658767826234765898---------77658999
Q ss_pred CHHHHHHHCCCCCCCCCCCCCCCCCCEECCCCHH
Q ss_conf 3366431000001222237799736040775553
Q 001460 789 CEKKYHKLCMQEMDALSDNLTGLVTSFCGRKCQE 822 (1074)
Q Consensus 789 Cer~YHv~CL~~~d~l~~e~~p~~~WFCs~~Cke 822 (1074)
|+++||..|+.+ ++...|.+.|||. .|..
T Consensus 75 C~~~yH~~Cl~p----pl~~~P~g~W~C~-~C~~ 103 (111)
T 2ysm_A 75 CDKGYHTFCLQP----VMKSVPTNGWKCK-NCRI 103 (111)
T ss_dssp SCCEEEGGGSSS----CCSSCCSSCCCCH-HHHC
T ss_pred CCCHHHHHHCCC----CCCCCCCCCCCCC-CCCC
T ss_conf 980886986587----6566889882992-8827
No 3
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=1.00 E-value=1 Score=127.06 Aligned_cols=93 Identities=28% Similarity=0.711 Sum_probs=74.7
Q ss_pred CCCCCCCC----------CCCCEECCCCCCCCCCCCCCCC-----CCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 42321167----------8972740899996789978776-----789999778896-4333689899998898898865
Q 001460 719 DTCGICGD----------GGDLICCDGCPSTFHQSCLDIQ-----MLPPGDWHCPNC-TCKFCGLAGEDDAEGDDTTTSA 782 (1074)
Q Consensus 719 d~C~VCgd----------GGeLLcCD~CprafH~~CL~l~-----~vP~g~W~Cp~C-~C~~Cg~~~~ds~eed~~s~~~ 782 (1074)
+.|.+|.. +++||+|+.|+++||+.||+++ .+|.+.|+|+.| .|.+|+....+ ..
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~~C~~C~~~~~~---------~~ 72 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIECKSCILCGTSEND---------DQ 72 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCCHHHHHHHHHTTCCCGGGCCCTTTTCCTTT---------TT
T ss_pred CCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCHHHCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC---------CC
T ss_conf 808658897534446799999869298998323213878466431168775175662733756346888---------74
Q ss_pred CCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCEECCCCHHHHH
Q ss_conf 1037753366431000001222237799736040775553599
Q 001460 783 LLPCAMCEKKYHKLCMQEMDALSDNLTGLVTSFCGRKCQELSE 825 (1074)
Q Consensus 783 Ll~CdQCer~YHv~CL~~~d~l~~e~~p~~~WFCs~~CkeI~e 825 (1074)
++.|+.|+++||+.|+.+ ++...|.+.|||. .|...+.
T Consensus 73 ll~Cd~C~~~yH~~Cl~p----pl~~~P~g~W~C~-~C~~~~~ 110 (114)
T 2kwj_A 73 LLFCDDCDRGYHMYCLNP----PVAEPPEGSWSCH-LCWELLK 110 (114)
T ss_dssp EEECSSSCCEEETTTSSS----CCSSCCSSCCCCH-HHHHHHH
T ss_pred EEECCCCCCCCCCCCCCC----CCCCCCCCCEECC-CCCCHHH
T ss_conf 577489894102504598----7467889781992-4103442
No 4
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=1.00 E-value=1 Score=126.31 Aligned_cols=91 Identities=31% Similarity=0.752 Sum_probs=77.2
Q ss_pred CCCCCCCCCCCCCCCCCCCEECC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 88886664232116789727408--9999678997877678999977889643336898999988988988651037753
Q 001460 712 DGDDPNDDTCGICGDGGDLICCD--GCPSTFHQSCLDIQMLPPGDWHCPNCTCKFCGLAGEDDAEGDDTTTSALLPCAMC 789 (1074)
Q Consensus 712 dgdd~ndd~C~VCgdGGeLLcCD--~CprafH~~CL~l~~vP~g~W~Cp~C~C~~Cg~~~~ds~eed~~s~~~Ll~CdQC 789 (1074)
++...++++|.+|+++|+||+|| .||++||+.||++..+|.|+|+|+.|.|..|+... .+.|..|
T Consensus 9 ~~~~~~~~~C~~C~~~G~ll~CD~~~Cp~~fH~~Cl~L~~~P~g~W~Cp~c~C~~C~k~~-------------~~~C~~C 75 (107)
T 4gne_A 9 EPKQMHEDYCFQCGDGGELVMCDKKDCPKAYHLLCLNLTQPPYGKWECPWHQCDECSSAA-------------VSFCEFC 75 (107)
T ss_dssp -CCCSSCSSCTTTCCCSEEEECCSTTCCCEECTGGGTCSSCCSSCCCCGGGBCTTTCSBC-------------CEECSSS
T ss_pred CCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCC-------------CCCCCCC
T ss_conf 886889799984799784757799999926522518687579988889899988177989-------------8674778
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCEECCC
Q ss_conf 366431000001222237799736040775
Q 001460 790 EKKYHKLCMQEMDALSDNLTGLVTSFCGRK 819 (1074)
Q Consensus 790 er~YHv~CL~~~d~l~~e~~p~~~WFCs~~ 819 (1074)
...||..|+.... ...+...|+|+..
T Consensus 76 p~sfC~~c~~g~l----~~~~~~~~~c~~~ 101 (107)
T 4gne_A 76 PHSFCKDHEKGAL----VPSALEGRLCCSE 101 (107)
T ss_dssp SCEECTTTCTTSC----EECTTTTCEECTT
T ss_pred CCCHHHHCCCCCC----EECCCCCCEECCC
T ss_conf 7101121158731----1027889666677
No 5
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=1.00 E-value=1 Score=120.58 Aligned_cols=92 Identities=26% Similarity=0.643 Sum_probs=73.5
Q ss_pred CCCCCCCCCC---------CCCCEECCCCCCCCCCCCCCCC-----CCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCC
Q ss_conf 6642321167---------8972740899996789978776-----789999778896-433368989999889889886
Q 001460 717 NDDTCGICGD---------GGDLICCDGCPSTFHQSCLDIQ-----MLPPGDWHCPNC-TCKFCGLAGEDDAEGDDTTTS 781 (1074)
Q Consensus 717 ndd~C~VCgd---------GGeLLcCD~CprafH~~CL~l~-----~vP~g~W~Cp~C-~C~~Cg~~~~ds~eed~~s~~ 781 (1074)
+.+.|.+|.. +++||.|+.|+++||++||++. .++.+.|+|+.| .|.+|+..+.+. .
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~~C~vC~~~~~~~--------~ 75 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECKTCSSCRDQGKNA--------D 75 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTCCBTTTCCCCCTT--------C
T ss_pred CCCCCCCCCCCHHHCCCCCCHHCEEHHHCCCCCCCCHHCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC--------C
T ss_conf 67613103893342768991116375344998897035388899987542465301177544666868885--------6
Q ss_pred CCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCEECCCCH
Q ss_conf 5103775336643100000122223779973604077555
Q 001460 782 ALLPCAMCEKKYHKLCMQEMDALSDNLTGLVTSFCGRKCQ 821 (1074)
Q Consensus 782 ~Ll~CdQCer~YHv~CL~~~d~l~~e~~p~~~WFCs~~Ck 821 (1074)
.++.|+.|+++||..|+.+ ++...|.+.|||. .|+
T Consensus 76 ~ll~Cd~C~~~yH~~Cl~p----~l~~~P~~~W~C~-~C~ 110 (112)
T 3v43_A 76 NMLFCDSCDRGFHMECCDP----PLTRMPKGMWICQ-ICR 110 (112)
T ss_dssp CCEECTTTCCEECGGGCSS----CCSSCCSSCCCCT-TTS
T ss_pred CEEECCCCCCEEECCCCCC----CCCCCCCCCEECC-CCC
T ss_conf 5687489989156635899----9898999885797-878
No 6
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=1.00 E-value=1 Score=105.73 Aligned_cols=100 Identities=24% Similarity=0.570 Sum_probs=68.7
Q ss_pred EEEEECCCEEECCCCCEEECCEEEECCCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 21562399020777832202102331487545675247616984401344774200222223698656778888666423
Q 001460 642 EGWITRDGIHCGCCSKILTVSKFEIHAGSKLRQPFQNIYLDSGVSLLQCQIDAWNKLKESESIGFESVDVDGDDPNDDTC 721 (1074)
Q Consensus 642 eG~it~~GI~C~CC~kvfS~SeFE~HAG~k~rkPy~nI~L~~G~SLleC~I~aw~~q~~sEk~G~~~V~~dgdd~ndd~C 721 (1074)
+|.. ++|.|.+|...++++++ ......|+..+.+ ...|....... ++. .+++.++++|
T Consensus 9 ~~~~--~~i~Ct~Cg~~~~~~q~----~~~~~HPll~v~~-----C~~C~~~y~~~-------~~~----~d~Dg~~d~C 66 (142)
T 2lbm_A 9 DGLH--GIVSCTACGQQVNHFQK----DSIYRHPSLQVLI-----CKNCFKYYMSD-------DIS----RDSDGMDEQC 66 (142)
T ss_dssp SSCC--CCCBCTTTCSBSTTTCS----SSEEEETTTTEEE-----EHHHHHHHHHS-------CCC----BCTTSCBCSC
T ss_pred CCCC--CCCEECCCCCCCCCCCC----CCHHCCCCCCCCC-----CHHHHHHHHCC-------CCE----ECCCCCCCEE
T ss_conf 6775--79885489986565456----6321298756642-----47789887237-------813----1688887800
Q ss_pred CCCCCCCCCEECCCCCCCCCCCCCCCCC---------CCCCCCCCCCCCCC
Q ss_conf 2116789727408999967899787767---------89999778896433
Q 001460 722 GICGDGGDLICCDGCPSTFHQSCLDIQM---------LPPGDWHCPNCTCK 763 (1074)
Q Consensus 722 ~VCgdGGeLLcCD~CprafH~~CL~l~~---------vP~g~W~Cp~C~C~ 763 (1074)
.+|++||+|+|||.||++||..|+.++. .|.++|+|+.|.+.
T Consensus 67 ~vC~~GG~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~~ 117 (142)
T 2lbm_A 67 RWCAEGGNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHPE 117 (142)
T ss_dssp SSSCCCSSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCCC
T ss_pred CCCCCCCCEEECCCCCCEEEHHHCCCCCCHHHHHHCCCCCCCCEEECCCCC
T ss_conf 003999847868998973127454888873666542468999882126685
No 7
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=1.00 E-value=1 Score=104.39 Aligned_cols=50 Identities=48% Similarity=1.242 Sum_probs=44.9
Q ss_pred CCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCC--CCCCCCCCCCCCCC
Q ss_conf 888666423211678972740899996789978776--78999977889643
Q 001460 713 GDDPNDDTCGICGDGGDLICCDGCPSTFHQSCLDIQ--MLPPGDWHCPNCTC 762 (1074)
Q Consensus 713 gdd~ndd~C~VCgdGGeLLcCD~CprafH~~CL~l~--~vP~g~W~Cp~C~C 762 (1074)
.++.+++.|.+|+++|+||+||+|+++||+.|++|+ .+|.|+|+|+.|.-
T Consensus 2 ~~d~~~~~C~~C~~~g~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~ 53 (207)
T 3u5n_A 2 DDDPNEDWCAVCQNGGDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRD 53 (207)
T ss_dssp -CCSSCSSBTTTCCCEEEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSC
T ss_pred CCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCEEECCEEC
T ss_conf 8788889898889999367769999843871589998888998878684268
No 8
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=1.00 E-value=1 Score=101.45 Aligned_cols=48 Identities=44% Similarity=1.185 Sum_probs=43.5
Q ss_pred CCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCC
Q ss_conf 666423211678972740899996789978776--789999778896433
Q 001460 716 PNDDTCGICGDGGDLICCDGCPSTFHQSCLDIQ--MLPPGDWHCPNCTCK 763 (1074)
Q Consensus 716 ~ndd~C~VCgdGGeLLcCD~CprafH~~CL~l~--~vP~g~W~Cp~C~C~ 763 (1074)
+|++.|.+|+++|+||+||+|+++||+.|+.|+ .+|.++|+|+.|...
T Consensus 2 ~~~~~C~~C~~~g~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~ 51 (184)
T 3o36_A 2 PNEDWCAVCQNGGELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDL 51 (184)
T ss_dssp CSCSSCTTTCCCSSCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCS
T ss_pred CCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCC
T ss_conf 99995411799990566299995308113689878799988789255686
No 9
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=94.33 Aligned_cols=47 Identities=30% Similarity=0.810 Sum_probs=42.5
Q ss_pred CCCCCCCCCCCCCCEECCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCC
Q ss_conf 66423211678972740899996789978776--789999778896433
Q 001460 717 NDDTCGICGDGGDLICCDGCPSTFHQSCLDIQ--MLPPGDWHCPNCTCK 763 (1074)
Q Consensus 717 ndd~C~VCgdGGeLLcCD~CprafH~~CL~l~--~vP~g~W~Cp~C~C~ 763 (1074)
+++.|.+|+++|+||+||+|+++||+.|+.|+ .+|.|+|+|+.|...
T Consensus 1 s~~~C~~C~~~g~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 1 SATICRVCQKPGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 49 (189)
T ss_dssp CCCCBTTTCCCSSCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCS
T ss_pred CCCCCCCCCCCCCEEECCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 9882764799994568999983331022898756689987889270477
No 10
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=1.00 E-value=1 Score=93.96 Aligned_cols=49 Identities=31% Similarity=0.792 Sum_probs=44.4
Q ss_pred CCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCC--CCCCCCCCCCCCCC
Q ss_conf 88666423211678972740899996789978776--78999977889643
Q 001460 714 DDPNDDTCGICGDGGDLICCDGCPSTFHQSCLDIQ--MLPPGDWHCPNCTC 762 (1074)
Q Consensus 714 dd~ndd~C~VCgdGGeLLcCD~CprafH~~CL~l~--~vP~g~W~Cp~C~C 762 (1074)
.+.+++.|.+|+++|+||+||.|+++||++|+.|+ .+|.++|+|+.|..
T Consensus 21 ~d~n~~~C~vC~~~g~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~ 71 (88)
T 1fp0_A 21 LDDSATICRVCQKPGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHV 71 (88)
T ss_dssp SSSSSSCCSSSCSSSCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCC
T ss_pred CCCCCCCCCCCCCCCCEEECCCCCCCEECCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 388998183769999778899999724163289897878699767726448
Done!