BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001462
(1074 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 116 bits (290), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 74/245 (30%), Positives = 121/245 (49%), Gaps = 6/245 (2%)
Query: 3 KRGYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVD 62
+ G LQ HS++V ++ + + + DD+ V LW L +L G SS V
Sbjct: 291 RNGQLLQTLTGHSSSVWGVAFSPDG-QTIASASDDKTVKLWNR-NGQHLQTLTGHSSSVW 348
Query: 63 SVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDT 122
VAF + + + +KLW+ ++++TLTGH S+ V F P G+ AS D
Sbjct: 349 GVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDK 407
Query: 123 NLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKF 182
+K+W+ R + T GH+ + + F+PD + + S D VK+W+ G+LL
Sbjct: 408 TVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRN-GQLLQTLTG 465
Query: 183 HEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLF 242
H +R + F P +A+ S D+TVK W+ +L+ + + V + F PDG+T+
Sbjct: 466 HSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIA 524
Query: 243 SGFDD 247
S DD
Sbjct: 525 SASDD 529
Score = 115 bits (287), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 73/245 (29%), Positives = 120/245 (48%), Gaps = 6/245 (2%)
Query: 3 KRGYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVD 62
+ G LQ HS++V ++ + + + DD+ V LW L +L G SS V
Sbjct: 168 RNGQLLQTLTGHSSSVWGVAFSPDG-QTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVR 225
Query: 63 SVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDT 122
VAF + + + +KLW+ ++++TLTGH S+ V F P G+ AS D
Sbjct: 226 GVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDK 284
Query: 123 NLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKF 182
+K+W+ R + T GH+ + + F+PDG+ + S D VK+W+ G+ L
Sbjct: 285 TVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQHLQTLTG 342
Query: 183 HEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLF 242
H + + F P +A+ S D+TVK W+ +L+ + + V + F PDG+T+
Sbjct: 343 HSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIA 401
Query: 243 SGFDD 247
S DD
Sbjct: 402 SASDD 406
Score = 113 bits (283), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 72/235 (30%), Positives = 118/235 (50%), Gaps = 6/235 (2%)
Query: 13 AHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVL 72
AHS++V ++ + + + DD+ V LW L +L G SS V VAF
Sbjct: 14 AHSSSVRGVAFSPDG-QTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQT 71
Query: 73 VLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKK 132
+ + + +KLW+ ++++TLTGH S+ V F P G+ AS D +K+W+ R
Sbjct: 72 IASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNG 129
Query: 133 GCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDF 192
+ T GH+ + + F+PDG+ + S D VK+W+ G+LL H + + F
Sbjct: 130 QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAF 188
Query: 193 HPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGFDD 247
P +A+ S D+TVK W+ +L+ + + V + F PDG+T+ S DD
Sbjct: 189 SPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDD 242
Score = 106 bits (265), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 64/210 (30%), Positives = 106/210 (50%), Gaps = 5/210 (2%)
Query: 3 KRGYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVD 62
+ G LQ HS++V ++ + + + DD+ V LW L +L G SS V
Sbjct: 373 RNGQLLQTLTGHSSSVRGVAFSPDG-QTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVW 430
Query: 63 SVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDT 122
VAF + + + + +KLW+ ++++TLTGH S+ V F P G+ AS D
Sbjct: 431 GVAFSPDDQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDK 489
Query: 123 NLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKF 182
+K+W+ R + T GH+ + + F+PDG+ + S D VK+W+ G+LL
Sbjct: 490 TVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTG 547
Query: 183 HEGHIRSIDFHPLEFLLATGSADRTVKFWD 212
H + + F P +A+ S+D+TVK W+
Sbjct: 548 HSSSVWGVAFSPDGQTIASASSDKTVKLWN 577
Score = 88.6 bits (218), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 77/152 (50%), Gaps = 3/152 (1%)
Query: 96 LTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGR 155
L H S+ V F P G+ AS D +K+W+ R + T GH+ + + F+PDG+
Sbjct: 12 LEAHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQ 70
Query: 156 WVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLET 215
+ S D VK+W+ G+LL H +R + F P +A+ S D+TVK W+
Sbjct: 71 TIASASDDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RN 128
Query: 216 FELIGSTRPEVTGVHAITFHPDGRTLFSGFDD 247
+L+ + + V + F PDG+T+ S DD
Sbjct: 129 GQLLQTLTGHSSSVWGVAFSPDGQTIASASDD 160
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 105 bits (262), Expect = 1e-22, Method: Composition-based stats.
Identities = 60/213 (28%), Positives = 109/213 (51%), Gaps = 7/213 (3%)
Query: 5 GYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSV 64
G L+ HS V C + ++ +++G D+ V +W + L +L S PV +V
Sbjct: 100 GKCLKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV 158
Query: 65 AFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSN-CTAVEFHPFGEFFASGCMDTN 123
F+ L+++ + G+ ++WD + ++TL + + V+F P G++ + +D
Sbjct: 159 HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT 218
Query: 124 LKIWDIRKKGCIHTYKGHTRGINTI--RFT-PDGRWVVSGGFDNVVKVWDLTAGKLLHDF 180
LK+WD K C+ TY GH I F+ G+W+VSG DN+V +W+L +++
Sbjct: 219 LKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL 278
Query: 181 KFHEGHIRSIDFHPLEFLLATGSA--DRTVKFW 211
+ H + S HP E ++A+ + D+T+K W
Sbjct: 279 QGHTDVVISTACHPTENIIASAALENDKTIKLW 311
Score = 103 bits (256), Expect = 6e-22, Method: Composition-based stats.
Identities = 66/250 (26%), Positives = 111/250 (44%), Gaps = 12/250 (4%)
Query: 53 SLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFG 112
+L G + V SV F + A ++ +IK+W + K +T++GHK + V +
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 113 EFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLT 172
S D LKIWD+ C+ T KGH+ + F P +VSG FD V++WD+
Sbjct: 81 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 140
Query: 173 AGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFE----LIGSTRPEVTG 228
GK L H + ++ F+ L+ + S D + WD + + LI P V+
Sbjct: 141 TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 200
Query: 229 VHAITFHPDGRTLFSG-FDDNLKVYSWEPVICHDSV----DMGWSTLGDLCINDGKLLGC 283
V F P+G+ + + D+ LK++ + C + + + + + GK +
Sbjct: 201 V---KFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 257
Query: 284 SFYRNSVGIW 293
N V IW
Sbjct: 258 GSEDNLVYIW 267
Score = 97.1 bits (240), Expect = 4e-20, Method: Composition-based stats.
Identities = 57/226 (25%), Positives = 107/226 (47%), Gaps = 6/226 (2%)
Query: 30 FLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEE 89
L++ DD+ + +W + L +L G S+ V F+ L+++G+ +++WD++
Sbjct: 82 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 141
Query: 90 SKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTY-KGHTRGINTI 148
K ++TL H +AV F+ G S D +IWD C+ T ++ +
Sbjct: 142 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFV 201
Query: 149 RFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFL----LATGSA 204
+F+P+G+++++ DN +K+WD + GK L + H+ I F + +GS
Sbjct: 202 KFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI-FANFSVTGGKWIVSGSE 260
Query: 205 DRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGFDDNLK 250
D V W+L+T E++ + V + HP + S +N K
Sbjct: 261 DNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDK 306
Score = 95.5 bits (236), Expect = 1e-19, Method: Composition-based stats.
Identities = 61/260 (23%), Positives = 117/260 (45%), Gaps = 13/260 (5%)
Query: 3 KRGYKLQ-EFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPV 61
K Y L+ H+ V+ + +L D+ + +W ++ G +
Sbjct: 13 KPNYALKFTLAGHTKAVSSVKFSPNG-EWLAASSADKLIKIWGAYDGKFEKTISGHKLGI 71
Query: 62 DSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMD 121
VA+ S L+++ + +K+WD+ K ++TL GH + F+P SG D
Sbjct: 72 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 131
Query: 122 TNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFK 181
+++IWD++ C+ T H+ ++ + F DG +VS +D + ++WD +G+ L
Sbjct: 132 ESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI 191
Query: 182 FHEG-HIRSIDFHPLEFLLATGSADRTVKFWD------LETFELIGSTRPEVTGVHAITF 234
+ + + F P + + D T+K WD L+T+ + + + ++T
Sbjct: 192 DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVT- 250
Query: 235 HPDGRTLFSGFDDNLKVYSW 254
G+ + SG +DNL VY W
Sbjct: 251 --GGKWIVSGSEDNL-VYIW 267
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 105 bits (261), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 60/213 (28%), Positives = 109/213 (51%), Gaps = 7/213 (3%)
Query: 5 GYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSV 64
G L+ HS V C + ++ +++G D+ V +W + L +L S PV +V
Sbjct: 119 GKCLKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV 177
Query: 65 AFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSN-CTAVEFHPFGEFFASGCMDTN 123
F+ L+++ + G+ ++WD + ++TL + + V+F P G++ + +D
Sbjct: 178 HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT 237
Query: 124 LKIWDIRKKGCIHTYKGHTRGINTI--RFT-PDGRWVVSGGFDNVVKVWDLTAGKLLHDF 180
LK+WD K C+ TY GH I F+ G+W+VSG DN+V +W+L +++
Sbjct: 238 LKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL 297
Query: 181 KFHEGHIRSIDFHPLEFLLATGSA--DRTVKFW 211
+ H + S HP E ++A+ + D+T+K W
Sbjct: 298 QGHTDVVISTACHPTENIIASAALENDKTIKLW 330
Score = 100 bits (250), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 65/251 (25%), Positives = 111/251 (44%), Gaps = 12/251 (4%)
Query: 52 MSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPF 111
+L G + V SV F + + ++ +IK+W + K +T++GHK + V +
Sbjct: 39 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 98
Query: 112 GEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDL 171
S D LKIWD+ C+ T KGH+ + F P +VSG FD V++WD+
Sbjct: 99 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 158
Query: 172 TAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFE----LIGSTRPEVT 227
GK L H + ++ F+ L+ + S D + WD + + LI P V+
Sbjct: 159 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS 218
Query: 228 GVHAITFHPDGRTLFSG-FDDNLKVYSWEPVICHDSV----DMGWSTLGDLCINDGKLLG 282
V F P+G+ + + D+ LK++ + C + + + + + GK +
Sbjct: 219 FVK---FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV 275
Query: 283 CSFYRNSVGIW 293
N V IW
Sbjct: 276 SGSEDNLVYIW 286
Score = 97.1 bits (240), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 55/230 (23%), Positives = 106/230 (46%), Gaps = 5/230 (2%)
Query: 29 RFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLE 88
+L + D+ + +W ++ G + VA+ S L+++ + +K+WD+
Sbjct: 58 EWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVS 117
Query: 89 ESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTI 148
K ++TL GH + F+P SG D +++IWD++ C+ T H+ ++ +
Sbjct: 118 SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV 177
Query: 149 RFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEG-HIRSIDFHPLEFLLATGSADRT 207
F DG +VS +D + ++WD +G+ L + + + F P + + D T
Sbjct: 178 HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT 237
Query: 208 VKFWDLETFELIGST---RPEVTGVHAITFHPDGRTLFSGFDDNLKVYSW 254
+K WD + + + + E + A G+ + SG +DNL VY W
Sbjct: 238 LKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNL-VYIW 286
Score = 96.3 bits (238), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 54/212 (25%), Positives = 102/212 (48%), Gaps = 6/212 (2%)
Query: 30 FLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEE 89
L++ DD+ + +W + L +L G S+ V F+ L+++G+ +++WD++
Sbjct: 101 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 160
Query: 90 SKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTY-KGHTRGINTI 148
K ++TL H +AV F+ G S D +IWD C+ T ++ +
Sbjct: 161 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFV 220
Query: 149 RFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEF----LLATGSA 204
+F+P+G+++++ DN +K+WD + GK L + H+ I F + +GS
Sbjct: 221 KFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI-FANFSVTGGKWIVSGSE 279
Query: 205 DRTVKFWDLETFELIGSTRPEVTGVHAITFHP 236
D V W+L+T E++ + V + HP
Sbjct: 280 DNLVYIWNLQTKEIVQKLQGHTDVVISTACHP 311
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 105 bits (261), Expect = 2e-22, Method: Composition-based stats.
Identities = 60/213 (28%), Positives = 109/213 (51%), Gaps = 7/213 (3%)
Query: 5 GYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSV 64
G L+ HS V C + ++ +++G D+ V +W + L +L S PV +V
Sbjct: 96 GKCLKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV 154
Query: 65 AFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSN-CTAVEFHPFGEFFASGCMDTN 123
F+ L+++ + G+ ++WD + ++TL + + V+F P G++ + +D
Sbjct: 155 HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT 214
Query: 124 LKIWDIRKKGCIHTYKGHTRGINTI--RFT-PDGRWVVSGGFDNVVKVWDLTAGKLLHDF 180
LK+WD K C+ TY GH I F+ G+W+VSG DN+V +W+L +++
Sbjct: 215 LKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL 274
Query: 181 KFHEGHIRSIDFHPLEFLLATGSA--DRTVKFW 211
+ H + S HP E ++A+ + D+T+K W
Sbjct: 275 QGHTDVVISTACHPTENIIASAALENDKTIKLW 307
Score = 101 bits (252), Expect = 2e-21, Method: Composition-based stats.
Identities = 65/250 (26%), Positives = 111/250 (44%), Gaps = 12/250 (4%)
Query: 53 SLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFG 112
+L G + V SV F + + ++ +IK+W + K +T++GHK + V +
Sbjct: 17 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 76
Query: 113 EFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLT 172
S D LKIWD+ C+ T KGH+ + F P +VSG FD V++WD+
Sbjct: 77 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 136
Query: 173 AGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFE----LIGSTRPEVTG 228
GK L H + ++ F+ L+ + S D + WD + + LI P V+
Sbjct: 137 TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 196
Query: 229 VHAITFHPDGRTLFSG-FDDNLKVYSWEPVICHDSV----DMGWSTLGDLCINDGKLLGC 283
V F P+G+ + + D+ LK++ + C + + + + + GK +
Sbjct: 197 V---KFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 253
Query: 284 SFYRNSVGIW 293
N V IW
Sbjct: 254 GSEDNLVYIW 263
Score = 96.7 bits (239), Expect = 6e-20, Method: Composition-based stats.
Identities = 57/226 (25%), Positives = 107/226 (47%), Gaps = 6/226 (2%)
Query: 30 FLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEE 89
L++ DD+ + +W + L +L G S+ V F+ L+++G+ +++WD++
Sbjct: 78 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 137
Query: 90 SKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTY-KGHTRGINTI 148
K ++TL H +AV F+ G S D +IWD C+ T ++ +
Sbjct: 138 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFV 197
Query: 149 RFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFL----LATGSA 204
+F+P+G+++++ DN +K+WD + GK L + H+ I F + +GS
Sbjct: 198 KFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI-FANFSVTGGKWIVSGSE 256
Query: 205 DRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGFDDNLK 250
D V W+L+T E++ + V + HP + S +N K
Sbjct: 257 DNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDK 302
Score = 95.9 bits (237), Expect = 1e-19, Method: Composition-based stats.
Identities = 61/260 (23%), Positives = 118/260 (45%), Gaps = 13/260 (5%)
Query: 3 KRGYKLQ-EFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPV 61
K Y L+ H+ V+ + +L + D+ + +W ++ G +
Sbjct: 9 KPNYALKFTLAGHTKAVSSVKFSPNG-EWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 67
Query: 62 DSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMD 121
VA+ S L+++ + +K+WD+ K ++TL GH + F+P SG D
Sbjct: 68 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 127
Query: 122 TNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFK 181
+++IWD++ C+ T H+ ++ + F DG +VS +D + ++WD +G+ L
Sbjct: 128 ESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI 187
Query: 182 FHEG-HIRSIDFHPLEFLLATGSADRTVKFWD------LETFELIGSTRPEVTGVHAITF 234
+ + + F P + + D T+K WD L+T+ + + + ++T
Sbjct: 188 DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVT- 246
Query: 235 HPDGRTLFSGFDDNLKVYSW 254
G+ + SG +DNL VY W
Sbjct: 247 --GGKWIVSGSEDNL-VYIW 263
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 105 bits (261), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 60/213 (28%), Positives = 109/213 (51%), Gaps = 7/213 (3%)
Query: 5 GYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSV 64
G L+ HS V C + ++ +++G D+ V +W + L +L S PV +V
Sbjct: 121 GKCLKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV 179
Query: 65 AFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSN-CTAVEFHPFGEFFASGCMDTN 123
F+ L+++ + G+ ++WD + ++TL + + V+F P G++ + +D
Sbjct: 180 HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT 239
Query: 124 LKIWDIRKKGCIHTYKGHTRGINTI--RFT-PDGRWVVSGGFDNVVKVWDLTAGKLLHDF 180
LK+WD K C+ TY GH I F+ G+W+VSG DN+V +W+L +++
Sbjct: 240 LKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL 299
Query: 181 KFHEGHIRSIDFHPLEFLLATGSA--DRTVKFW 211
+ H + S HP E ++A+ + D+T+K W
Sbjct: 300 QGHTDVVISTACHPTENIIASAALENDKTIKLW 332
Score = 100 bits (249), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 65/251 (25%), Positives = 111/251 (44%), Gaps = 12/251 (4%)
Query: 52 MSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPF 111
+L G + V SV F + + ++ +IK+W + K +T++GHK + V +
Sbjct: 41 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 100
Query: 112 GEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDL 171
S D LKIWD+ C+ T KGH+ + F P +VSG FD V++WD+
Sbjct: 101 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 160
Query: 172 TAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFE----LIGSTRPEVT 227
GK L H + ++ F+ L+ + S D + WD + + LI P V+
Sbjct: 161 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS 220
Query: 228 GVHAITFHPDGRTLFSG-FDDNLKVYSWEPVICHDSV----DMGWSTLGDLCINDGKLLG 282
V F P+G+ + + D+ LK++ + C + + + + + GK +
Sbjct: 221 FVK---FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV 277
Query: 283 CSFYRNSVGIW 293
N V IW
Sbjct: 278 SGSEDNLVYIW 288
Score = 96.7 bits (239), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 55/230 (23%), Positives = 106/230 (46%), Gaps = 5/230 (2%)
Query: 29 RFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLE 88
+L + D+ + +W ++ G + VA+ S L+++ + +K+WD+
Sbjct: 60 EWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVS 119
Query: 89 ESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTI 148
K ++TL GH + F+P SG D +++IWD++ C+ T H+ ++ +
Sbjct: 120 SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV 179
Query: 149 RFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEG-HIRSIDFHPLEFLLATGSADRT 207
F DG +VS +D + ++WD +G+ L + + + F P + + D T
Sbjct: 180 HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT 239
Query: 208 VKFWDLETFELIGST---RPEVTGVHAITFHPDGRTLFSGFDDNLKVYSW 254
+K WD + + + + E + A G+ + SG +DNL VY W
Sbjct: 240 LKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNL-VYIW 288
Score = 95.9 bits (237), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 54/212 (25%), Positives = 102/212 (48%), Gaps = 6/212 (2%)
Query: 30 FLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEE 89
L++ DD+ + +W + L +L G S+ V F+ L+++G+ +++WD++
Sbjct: 103 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 162
Query: 90 SKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTY-KGHTRGINTI 148
K ++TL H +AV F+ G S D +IWD C+ T ++ +
Sbjct: 163 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFV 222
Query: 149 RFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEF----LLATGSA 204
+F+P+G+++++ DN +K+WD + GK L + H+ I F + +GS
Sbjct: 223 KFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI-FANFSVTGGKWIVSGSE 281
Query: 205 DRTVKFWDLETFELIGSTRPEVTGVHAITFHP 236
D V W+L+T E++ + V + HP
Sbjct: 282 DNLVYIWNLQTKEIVQKLQGHTDVVISTACHP 313
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 105 bits (261), Expect = 2e-22, Method: Composition-based stats.
Identities = 60/213 (28%), Positives = 110/213 (51%), Gaps = 7/213 (3%)
Query: 5 GYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSV 64
G L+ HS V C + ++ +++G D+ V +W + L +L S PV +V
Sbjct: 100 GKCLKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAV 158
Query: 65 AFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSN-CTAVEFHPFGEFFASGCMDTN 123
F+ L+++ + G+ ++WD + ++TL + + V+F P G++ + +D +
Sbjct: 159 HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDND 218
Query: 124 LKIWDIRKKGCIHTYKGHTRGINTI--RFT-PDGRWVVSGGFDNVVKVWDLTAGKLLHDF 180
LK+WD K C+ TY GH I F+ G+W+VSG DN+V +W+L +++
Sbjct: 219 LKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKL 278
Query: 181 KFHEGHIRSIDFHPLEFLLATGSA--DRTVKFW 211
+ H + S HP E ++A+ + D+T+K W
Sbjct: 279 QGHTDVVISTACHPTENIIASAALENDKTIKLW 311
Score = 100 bits (249), Expect = 4e-21, Method: Composition-based stats.
Identities = 69/258 (26%), Positives = 116/258 (44%), Gaps = 14/258 (5%)
Query: 47 KPT-ALM-SLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCT 104
KP ALM +L G + V SV F + + ++ +IK+W + K +T++GHK +
Sbjct: 13 KPNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS 72
Query: 105 AVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDN 164
V + S D LKIWD+ C+ T KGH+ + F P +VSG FD
Sbjct: 73 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 132
Query: 165 VVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFE----LIG 220
V++WD+ G L H + ++ F+ L+ + S D + WD + + LI
Sbjct: 133 SVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 192
Query: 221 STRPEVTGVHAITFHPDGRTLFSG-FDDNLKVYSWEPVICHDSV----DMGWSTLGDLCI 275
P V+ V F P+G+ + + D++LK++ + C + + + + +
Sbjct: 193 DDNPPVSFV---KFSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGHKNEKYCIFANFSV 249
Query: 276 NDGKLLGCSFYRNSVGIW 293
GK + N V IW
Sbjct: 250 TGGKWIVSGSEDNMVYIW 267
Score = 92.8 bits (229), Expect = 9e-19, Method: Composition-based stats.
Identities = 56/226 (24%), Positives = 106/226 (46%), Gaps = 6/226 (2%)
Query: 30 FLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEE 89
L++ DD+ + +W + L +L G S+ V F+ L+++G+ +++WD++
Sbjct: 82 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 141
Query: 90 SKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTY-KGHTRGINTI 148
++TL H +AV F+ G S D +IWD C+ T ++ +
Sbjct: 142 GMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFV 201
Query: 149 RFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFL----LATGSA 204
+F+P+G+++++ DN +K+WD + GK L + H+ I F + +GS
Sbjct: 202 KFSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGHKNEKYCI-FANFSVTGGKWIVSGSE 260
Query: 205 DRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGFDDNLK 250
D V W+L+T E++ + V + HP + S +N K
Sbjct: 261 DNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDK 306
Score = 91.3 bits (225), Expect = 3e-18, Method: Composition-based stats.
Identities = 54/232 (23%), Positives = 108/232 (46%), Gaps = 11/232 (4%)
Query: 30 FLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEE 89
+L + D+ + +W ++ G + VA+ S L+++ + +K+WD+
Sbjct: 40 WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSS 99
Query: 90 SKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIR 149
K ++TL GH + F+P SG D +++IWD++ C+ T H+ ++ +
Sbjct: 100 GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVH 159
Query: 150 FTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEG-HIRSIDFHPLEFLLATGSADRTV 208
F DG +VS +D + ++WD +G+ L + + + F P + + D +
Sbjct: 160 FNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDL 219
Query: 209 KFWD------LETFELIGSTRPEVTGVHAITFHPDGRTLFSGFDDNLKVYSW 254
K WD L+T+ + + + ++T G+ + SG +DN+ VY W
Sbjct: 220 KLWDYSKGKCLKTYTGHKNEKYCIFANFSVT---GGKWIVSGSEDNM-VYIW 267
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 104 bits (260), Expect = 2e-22, Method: Composition-based stats.
Identities = 60/213 (28%), Positives = 109/213 (51%), Gaps = 7/213 (3%)
Query: 5 GYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSV 64
G L+ HS V C + ++ +++G D+ V +W + L +L S PV +V
Sbjct: 114 GKCLKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV 172
Query: 65 AFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSN-CTAVEFHPFGEFFASGCMDTN 123
F+ L+++ + G+ ++WD + ++TL + + V+F P G++ + +D
Sbjct: 173 HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT 232
Query: 124 LKIWDIRKKGCIHTYKGHTRGINTI--RFT-PDGRWVVSGGFDNVVKVWDLTAGKLLHDF 180
LK+WD K C+ TY GH I F+ G+W+VSG DN+V +W+L +++
Sbjct: 233 LKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL 292
Query: 181 KFHEGHIRSIDFHPLEFLLATGSA--DRTVKFW 211
+ H + S HP E ++A+ + D+T+K W
Sbjct: 293 QGHTDVVISTACHPTENIIASAALENDKTIKLW 325
Score = 101 bits (251), Expect = 2e-21, Method: Composition-based stats.
Identities = 65/250 (26%), Positives = 111/250 (44%), Gaps = 12/250 (4%)
Query: 53 SLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFG 112
+L G + V SV F + + ++ +IK+W + K +T++GHK + V +
Sbjct: 35 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 94
Query: 113 EFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLT 172
S D LKIWD+ C+ T KGH+ + F P +VSG FD V++WD+
Sbjct: 95 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 154
Query: 173 AGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFE----LIGSTRPEVTG 228
GK L H + ++ F+ L+ + S D + WD + + LI P V+
Sbjct: 155 TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 214
Query: 229 VHAITFHPDGRTLFSG-FDDNLKVYSWEPVICHDSV----DMGWSTLGDLCINDGKLLGC 283
V F P+G+ + + D+ LK++ + C + + + + + GK +
Sbjct: 215 V---KFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 271
Query: 284 SFYRNSVGIW 293
N V IW
Sbjct: 272 GSEDNLVYIW 281
Score = 96.3 bits (238), Expect = 7e-20, Method: Composition-based stats.
Identities = 57/226 (25%), Positives = 107/226 (47%), Gaps = 6/226 (2%)
Query: 30 FLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEE 89
L++ DD+ + +W + L +L G S+ V F+ L+++G+ +++WD++
Sbjct: 96 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 155
Query: 90 SKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTY-KGHTRGINTI 148
K ++TL H +AV F+ G S D +IWD C+ T ++ +
Sbjct: 156 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFV 215
Query: 149 RFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFL----LATGSA 204
+F+P+G+++++ DN +K+WD + GK L + H+ I F + +GS
Sbjct: 216 KFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI-FANFSVTGGKWIVSGSE 274
Query: 205 DRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGFDDNLK 250
D V W+L+T E++ + V + HP + S +N K
Sbjct: 275 DNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDK 320
Score = 95.5 bits (236), Expect = 2e-19, Method: Composition-based stats.
Identities = 61/260 (23%), Positives = 118/260 (45%), Gaps = 13/260 (5%)
Query: 3 KRGYKLQ-EFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPV 61
K Y L+ H+ V+ + +L + D+ + +W ++ G +
Sbjct: 27 KPNYALKFTLAGHTKAVSSVKFSPNG-EWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 85
Query: 62 DSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMD 121
VA+ S L+++ + +K+WD+ K ++TL GH + F+P SG D
Sbjct: 86 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 145
Query: 122 TNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFK 181
+++IWD++ C+ T H+ ++ + F DG +VS +D + ++WD +G+ L
Sbjct: 146 ESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI 205
Query: 182 FHEG-HIRSIDFHPLEFLLATGSADRTVKFWD------LETFELIGSTRPEVTGVHAITF 234
+ + + F P + + D T+K WD L+T+ + + + ++T
Sbjct: 206 DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVT- 264
Query: 235 HPDGRTLFSGFDDNLKVYSW 254
G+ + SG +DNL VY W
Sbjct: 265 --GGKWIVSGSEDNL-VYIW 281
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 104 bits (260), Expect = 2e-22, Method: Composition-based stats.
Identities = 60/213 (28%), Positives = 109/213 (51%), Gaps = 7/213 (3%)
Query: 5 GYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSV 64
G L+ HS V C + ++ +++G D+ V +W + L +L S PV +V
Sbjct: 93 GKCLKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV 151
Query: 65 AFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSN-CTAVEFHPFGEFFASGCMDTN 123
F+ L+++ + G+ ++WD + ++TL + + V+F P G++ + +D
Sbjct: 152 HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT 211
Query: 124 LKIWDIRKKGCIHTYKGHTRGINTI--RFT-PDGRWVVSGGFDNVVKVWDLTAGKLLHDF 180
LK+WD K C+ TY GH I F+ G+W+VSG DN+V +W+L +++
Sbjct: 212 LKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL 271
Query: 181 KFHEGHIRSIDFHPLEFLLATGSA--DRTVKFW 211
+ H + S HP E ++A+ + D+T+K W
Sbjct: 272 QGHTDVVISTACHPTENIIASAALENDKTIKLW 304
Score = 101 bits (251), Expect = 3e-21, Method: Composition-based stats.
Identities = 65/250 (26%), Positives = 111/250 (44%), Gaps = 12/250 (4%)
Query: 53 SLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFG 112
+L G + V SV F + + ++ +IK+W + K +T++GHK + V +
Sbjct: 14 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 73
Query: 113 EFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLT 172
S D LKIWD+ C+ T KGH+ + F P +VSG FD V++WD+
Sbjct: 74 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 133
Query: 173 AGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFE----LIGSTRPEVTG 228
GK L H + ++ F+ L+ + S D + WD + + LI P V+
Sbjct: 134 TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 193
Query: 229 VHAITFHPDGRTLFSG-FDDNLKVYSWEPVICHDSV----DMGWSTLGDLCINDGKLLGC 283
V F P+G+ + + D+ LK++ + C + + + + + GK +
Sbjct: 194 V---KFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 250
Query: 284 SFYRNSVGIW 293
N V IW
Sbjct: 251 GSEDNLVYIW 260
Score = 96.3 bits (238), Expect = 8e-20, Method: Composition-based stats.
Identities = 57/226 (25%), Positives = 107/226 (47%), Gaps = 6/226 (2%)
Query: 30 FLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEE 89
L++ DD+ + +W + L +L G S+ V F+ L+++G+ +++WD++
Sbjct: 75 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 134
Query: 90 SKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTY-KGHTRGINTI 148
K ++TL H +AV F+ G S D +IWD C+ T ++ +
Sbjct: 135 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFV 194
Query: 149 RFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFL----LATGSA 204
+F+P+G+++++ DN +K+WD + GK L + H+ I F + +GS
Sbjct: 195 KFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI-FANFSVTGGKWIVSGSE 253
Query: 205 DRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGFDDNLK 250
D V W+L+T E++ + V + HP + S +N K
Sbjct: 254 DNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDK 299
Score = 95.1 bits (235), Expect = 2e-19, Method: Composition-based stats.
Identities = 61/260 (23%), Positives = 118/260 (45%), Gaps = 13/260 (5%)
Query: 3 KRGYKLQ-EFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPV 61
K Y L+ H+ V+ + +L + D+ + +W ++ G +
Sbjct: 6 KPNYALKFTLAGHTKAVSSVKFSPNG-EWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 64
Query: 62 DSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMD 121
VA+ S L+++ + +K+WD+ K ++TL GH + F+P SG D
Sbjct: 65 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 124
Query: 122 TNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFK 181
+++IWD++ C+ T H+ ++ + F DG +VS +D + ++WD +G+ L
Sbjct: 125 ESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI 184
Query: 182 FHEG-HIRSIDFHPLEFLLATGSADRTVKFWD------LETFELIGSTRPEVTGVHAITF 234
+ + + F P + + D T+K WD L+T+ + + + ++T
Sbjct: 185 DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVT- 243
Query: 235 HPDGRTLFSGFDDNLKVYSW 254
G+ + SG +DNL VY W
Sbjct: 244 --GGKWIVSGSEDNL-VYIW 260
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 104 bits (260), Expect = 2e-22, Method: Composition-based stats.
Identities = 60/213 (28%), Positives = 109/213 (51%), Gaps = 7/213 (3%)
Query: 5 GYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSV 64
G L+ HS V C + ++ +++G D+ V +W + L +L S PV +V
Sbjct: 102 GKCLKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV 160
Query: 65 AFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSN-CTAVEFHPFGEFFASGCMDTN 123
F+ L+++ + G+ ++WD + ++TL + + V+F P G++ + +D
Sbjct: 161 HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT 220
Query: 124 LKIWDIRKKGCIHTYKGHTRGINTI--RFT-PDGRWVVSGGFDNVVKVWDLTAGKLLHDF 180
LK+WD K C+ TY GH I F+ G+W+VSG DN+V +W+L +++
Sbjct: 221 LKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL 280
Query: 181 KFHEGHIRSIDFHPLEFLLATGSA--DRTVKFW 211
+ H + S HP E ++A+ + D+T+K W
Sbjct: 281 QGHTDVVISTACHPTENIIASAALENDKTIKLW 313
Score = 101 bits (251), Expect = 2e-21, Method: Composition-based stats.
Identities = 65/250 (26%), Positives = 111/250 (44%), Gaps = 12/250 (4%)
Query: 53 SLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFG 112
+L G + V SV F + + ++ +IK+W + K +T++GHK + V +
Sbjct: 23 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 82
Query: 113 EFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLT 172
S D LKIWD+ C+ T KGH+ + F P +VSG FD V++WD+
Sbjct: 83 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 142
Query: 173 AGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFE----LIGSTRPEVTG 228
GK L H + ++ F+ L+ + S D + WD + + LI P V+
Sbjct: 143 TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 202
Query: 229 VHAITFHPDGRTLFSG-FDDNLKVYSWEPVICHDSV----DMGWSTLGDLCINDGKLLGC 283
V F P+G+ + + D+ LK++ + C + + + + + GK +
Sbjct: 203 V---KFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 259
Query: 284 SFYRNSVGIW 293
N V IW
Sbjct: 260 GSEDNLVYIW 269
Score = 96.3 bits (238), Expect = 8e-20, Method: Composition-based stats.
Identities = 57/226 (25%), Positives = 107/226 (47%), Gaps = 6/226 (2%)
Query: 30 FLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEE 89
L++ DD+ + +W + L +L G S+ V F+ L+++G+ +++WD++
Sbjct: 84 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 143
Query: 90 SKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTY-KGHTRGINTI 148
K ++TL H +AV F+ G S D +IWD C+ T ++ +
Sbjct: 144 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFV 203
Query: 149 RFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFL----LATGSA 204
+F+P+G+++++ DN +K+WD + GK L + H+ I F + +GS
Sbjct: 204 KFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI-FANFSVTGGKWIVSGSE 262
Query: 205 DRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGFDDNLK 250
D V W+L+T E++ + V + HP + S +N K
Sbjct: 263 DNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDK 308
Score = 95.1 bits (235), Expect = 2e-19, Method: Composition-based stats.
Identities = 61/260 (23%), Positives = 118/260 (45%), Gaps = 13/260 (5%)
Query: 3 KRGYKLQ-EFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPV 61
K Y L+ H+ V+ + +L + D+ + +W ++ G +
Sbjct: 15 KPNYALKFTLAGHTKAVSSVKFSPNG-EWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 73
Query: 62 DSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMD 121
VA+ S L+++ + +K+WD+ K ++TL GH + F+P SG D
Sbjct: 74 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 133
Query: 122 TNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFK 181
+++IWD++ C+ T H+ ++ + F DG +VS +D + ++WD +G+ L
Sbjct: 134 ESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI 193
Query: 182 FHEG-HIRSIDFHPLEFLLATGSADRTVKFWD------LETFELIGSTRPEVTGVHAITF 234
+ + + F P + + D T+K WD L+T+ + + + ++T
Sbjct: 194 DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVT- 252
Query: 235 HPDGRTLFSGFDDNLKVYSW 254
G+ + SG +DNL VY W
Sbjct: 253 --GGKWIVSGSEDNL-VYIW 269
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 104 bits (260), Expect = 2e-22, Method: Composition-based stats.
Identities = 60/213 (28%), Positives = 109/213 (51%), Gaps = 7/213 (3%)
Query: 5 GYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSV 64
G L+ HS V C + ++ +++G D+ V +W + L +L S PV +V
Sbjct: 97 GKCLKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV 155
Query: 65 AFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSN-CTAVEFHPFGEFFASGCMDTN 123
F+ L+++ + G+ ++WD + ++TL + + V+F P G++ + +D
Sbjct: 156 HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT 215
Query: 124 LKIWDIRKKGCIHTYKGHTRGINTI--RFT-PDGRWVVSGGFDNVVKVWDLTAGKLLHDF 180
LK+WD K C+ TY GH I F+ G+W+VSG DN+V +W+L +++
Sbjct: 216 LKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL 275
Query: 181 KFHEGHIRSIDFHPLEFLLATGSA--DRTVKFW 211
+ H + S HP E ++A+ + D+T+K W
Sbjct: 276 QGHTDVVISTACHPTENIIASAALENDKTIKLW 308
Score = 101 bits (251), Expect = 3e-21, Method: Composition-based stats.
Identities = 65/250 (26%), Positives = 111/250 (44%), Gaps = 12/250 (4%)
Query: 53 SLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFG 112
+L G + V SV F + + ++ +IK+W + K +T++GHK + V +
Sbjct: 18 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 77
Query: 113 EFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLT 172
S D LKIWD+ C+ T KGH+ + F P +VSG FD V++WD+
Sbjct: 78 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 137
Query: 173 AGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFE----LIGSTRPEVTG 228
GK L H + ++ F+ L+ + S D + WD + + LI P V+
Sbjct: 138 TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 197
Query: 229 VHAITFHPDGRTLFSG-FDDNLKVYSWEPVICHDSV----DMGWSTLGDLCINDGKLLGC 283
V F P+G+ + + D+ LK++ + C + + + + + GK +
Sbjct: 198 V---KFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 254
Query: 284 SFYRNSVGIW 293
N V IW
Sbjct: 255 GSEDNLVYIW 264
Score = 96.3 bits (238), Expect = 8e-20, Method: Composition-based stats.
Identities = 57/226 (25%), Positives = 107/226 (47%), Gaps = 6/226 (2%)
Query: 30 FLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEE 89
L++ DD+ + +W + L +L G S+ V F+ L+++G+ +++WD++
Sbjct: 79 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 138
Query: 90 SKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTY-KGHTRGINTI 148
K ++TL H +AV F+ G S D +IWD C+ T ++ +
Sbjct: 139 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFV 198
Query: 149 RFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFL----LATGSA 204
+F+P+G+++++ DN +K+WD + GK L + H+ I F + +GS
Sbjct: 199 KFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI-FANFSVTGGKWIVSGSE 257
Query: 205 DRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGFDDNLK 250
D V W+L+T E++ + V + HP + S +N K
Sbjct: 258 DNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDK 303
Score = 95.1 bits (235), Expect = 2e-19, Method: Composition-based stats.
Identities = 61/260 (23%), Positives = 118/260 (45%), Gaps = 13/260 (5%)
Query: 3 KRGYKLQ-EFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPV 61
K Y L+ H+ V+ + +L + D+ + +W ++ G +
Sbjct: 10 KPNYALKFTLAGHTKAVSSVKFSPNG-EWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 68
Query: 62 DSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMD 121
VA+ S L+++ + +K+WD+ K ++TL GH + F+P SG D
Sbjct: 69 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 128
Query: 122 TNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFK 181
+++IWD++ C+ T H+ ++ + F DG +VS +D + ++WD +G+ L
Sbjct: 129 ESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI 188
Query: 182 FHEG-HIRSIDFHPLEFLLATGSADRTVKFWD------LETFELIGSTRPEVTGVHAITF 234
+ + + F P + + D T+K WD L+T+ + + + ++T
Sbjct: 189 DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVT- 247
Query: 235 HPDGRTLFSGFDDNLKVYSW 254
G+ + SG +DNL VY W
Sbjct: 248 --GGKWIVSGSEDNL-VYIW 264
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 104 bits (260), Expect = 2e-22, Method: Composition-based stats.
Identities = 60/213 (28%), Positives = 109/213 (51%), Gaps = 7/213 (3%)
Query: 5 GYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSV 64
G L+ HS V C + ++ +++G D+ V +W + L +L S PV +V
Sbjct: 103 GKCLKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV 161
Query: 65 AFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSN-CTAVEFHPFGEFFASGCMDTN 123
F+ L+++ + G+ ++WD + ++TL + + V+F P G++ + +D
Sbjct: 162 HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT 221
Query: 124 LKIWDIRKKGCIHTYKGHTRGINTI--RFT-PDGRWVVSGGFDNVVKVWDLTAGKLLHDF 180
LK+WD K C+ TY GH I F+ G+W+VSG DN+V +W+L +++
Sbjct: 222 LKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL 281
Query: 181 KFHEGHIRSIDFHPLEFLLATGSA--DRTVKFW 211
+ H + S HP E ++A+ + D+T+K W
Sbjct: 282 QGHTDVVISTACHPTENIIASAALENDKTIKLW 314
Score = 101 bits (251), Expect = 2e-21, Method: Composition-based stats.
Identities = 65/250 (26%), Positives = 111/250 (44%), Gaps = 12/250 (4%)
Query: 53 SLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFG 112
+L G + V SV F + + ++ +IK+W + K +T++GHK + V +
Sbjct: 24 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 83
Query: 113 EFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLT 172
S D LKIWD+ C+ T KGH+ + F P +VSG FD V++WD+
Sbjct: 84 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 143
Query: 173 AGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFE----LIGSTRPEVTG 228
GK L H + ++ F+ L+ + S D + WD + + LI P V+
Sbjct: 144 TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 203
Query: 229 VHAITFHPDGRTLFSG-FDDNLKVYSWEPVICHDSV----DMGWSTLGDLCINDGKLLGC 283
V F P+G+ + + D+ LK++ + C + + + + + GK +
Sbjct: 204 V---KFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 260
Query: 284 SFYRNSVGIW 293
N V IW
Sbjct: 261 GSEDNLVYIW 270
Score = 96.3 bits (238), Expect = 8e-20, Method: Composition-based stats.
Identities = 57/226 (25%), Positives = 107/226 (47%), Gaps = 6/226 (2%)
Query: 30 FLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEE 89
L++ DD+ + +W + L +L G S+ V F+ L+++G+ +++WD++
Sbjct: 85 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 144
Query: 90 SKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTY-KGHTRGINTI 148
K ++TL H +AV F+ G S D +IWD C+ T ++ +
Sbjct: 145 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFV 204
Query: 149 RFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFL----LATGSA 204
+F+P+G+++++ DN +K+WD + GK L + H+ I F + +GS
Sbjct: 205 KFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI-FANFSVTGGKWIVSGSE 263
Query: 205 DRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGFDDNLK 250
D V W+L+T E++ + V + HP + S +N K
Sbjct: 264 DNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDK 309
Score = 95.1 bits (235), Expect = 2e-19, Method: Composition-based stats.
Identities = 61/260 (23%), Positives = 118/260 (45%), Gaps = 13/260 (5%)
Query: 3 KRGYKLQ-EFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPV 61
K Y L+ H+ V+ + +L + D+ + +W ++ G +
Sbjct: 16 KPNYALKFTLAGHTKAVSSVKFSPNG-EWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 74
Query: 62 DSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMD 121
VA+ S L+++ + +K+WD+ K ++TL GH + F+P SG D
Sbjct: 75 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 134
Query: 122 TNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFK 181
+++IWD++ C+ T H+ ++ + F DG +VS +D + ++WD +G+ L
Sbjct: 135 ESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI 194
Query: 182 FHEG-HIRSIDFHPLEFLLATGSADRTVKFWD------LETFELIGSTRPEVTGVHAITF 234
+ + + F P + + D T+K WD L+T+ + + + ++T
Sbjct: 195 DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVT- 253
Query: 235 HPDGRTLFSGFDDNLKVYSW 254
G+ + SG +DNL VY W
Sbjct: 254 --GGKWIVSGSEDNL-VYIW 270
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 104 bits (260), Expect = 2e-22, Method: Composition-based stats.
Identities = 60/213 (28%), Positives = 109/213 (51%), Gaps = 7/213 (3%)
Query: 5 GYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSV 64
G L+ HS V C + ++ +++G D+ V +W + L +L S PV +V
Sbjct: 103 GKCLKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV 161
Query: 65 AFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSN-CTAVEFHPFGEFFASGCMDTN 123
F+ L+++ + G+ ++WD + ++TL + + V+F P G++ + +D
Sbjct: 162 HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT 221
Query: 124 LKIWDIRKKGCIHTYKGHTRGINTI--RFT-PDGRWVVSGGFDNVVKVWDLTAGKLLHDF 180
LK+WD K C+ TY GH I F+ G+W+VSG DN+V +W+L +++
Sbjct: 222 LKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL 281
Query: 181 KFHEGHIRSIDFHPLEFLLATGSA--DRTVKFW 211
+ H + S HP E ++A+ + D+T+K W
Sbjct: 282 QGHTDVVISTACHPTENIIASAALENDKTIKLW 314
Score = 101 bits (251), Expect = 3e-21, Method: Composition-based stats.
Identities = 65/250 (26%), Positives = 111/250 (44%), Gaps = 12/250 (4%)
Query: 53 SLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFG 112
+L G + V SV F + + ++ +IK+W + K +T++GHK + V +
Sbjct: 24 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 83
Query: 113 EFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLT 172
S D LKIWD+ C+ T KGH+ + F P +VSG FD V++WD+
Sbjct: 84 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 143
Query: 173 AGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFE----LIGSTRPEVTG 228
GK L H + ++ F+ L+ + S D + WD + + LI P V+
Sbjct: 144 TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 203
Query: 229 VHAITFHPDGRTLFSG-FDDNLKVYSWEPVICHDSV----DMGWSTLGDLCINDGKLLGC 283
V F P+G+ + + D+ LK++ + C + + + + + GK +
Sbjct: 204 V---KFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 260
Query: 284 SFYRNSVGIW 293
N V IW
Sbjct: 261 GSEDNLVYIW 270
Score = 96.3 bits (238), Expect = 8e-20, Method: Composition-based stats.
Identities = 57/226 (25%), Positives = 107/226 (47%), Gaps = 6/226 (2%)
Query: 30 FLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEE 89
L++ DD+ + +W + L +L G S+ V F+ L+++G+ +++WD++
Sbjct: 85 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 144
Query: 90 SKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTY-KGHTRGINTI 148
K ++TL H +AV F+ G S D +IWD C+ T ++ +
Sbjct: 145 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFV 204
Query: 149 RFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFL----LATGSA 204
+F+P+G+++++ DN +K+WD + GK L + H+ I F + +GS
Sbjct: 205 KFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI-FANFSVTGGKWIVSGSE 263
Query: 205 DRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGFDDNLK 250
D V W+L+T E++ + V + HP + S +N K
Sbjct: 264 DNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDK 309
Score = 95.1 bits (235), Expect = 2e-19, Method: Composition-based stats.
Identities = 61/260 (23%), Positives = 118/260 (45%), Gaps = 13/260 (5%)
Query: 3 KRGYKLQ-EFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPV 61
K Y L+ H+ V+ + +L + D+ + +W ++ G +
Sbjct: 16 KPNYALKFTLAGHTKAVSSVKFSPNG-EWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 74
Query: 62 DSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMD 121
VA+ S L+++ + +K+WD+ K ++TL GH + F+P SG D
Sbjct: 75 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 134
Query: 122 TNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFK 181
+++IWD++ C+ T H+ ++ + F DG +VS +D + ++WD +G+ L
Sbjct: 135 ESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI 194
Query: 182 FHEG-HIRSIDFHPLEFLLATGSADRTVKFWD------LETFELIGSTRPEVTGVHAITF 234
+ + + F P + + D T+K WD L+T+ + + + ++T
Sbjct: 195 DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVT- 253
Query: 235 HPDGRTLFSGFDDNLKVYSW 254
G+ + SG +DNL VY W
Sbjct: 254 --GGKWIVSGSEDNL-VYIW 270
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 104 bits (260), Expect = 3e-22, Method: Composition-based stats.
Identities = 60/213 (28%), Positives = 109/213 (51%), Gaps = 7/213 (3%)
Query: 5 GYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSV 64
G L+ HS V C + ++ +++G D+ V +W + L +L S PV +V
Sbjct: 97 GKCLKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV 155
Query: 65 AFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSN-CTAVEFHPFGEFFASGCMDTN 123
F+ L+++ + G+ ++WD + ++TL + + V+F P G++ + +D
Sbjct: 156 HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT 215
Query: 124 LKIWDIRKKGCIHTYKGHTRGINTI--RFT-PDGRWVVSGGFDNVVKVWDLTAGKLLHDF 180
LK+WD K C+ TY GH I F+ G+W+VSG DN+V +W+L +++
Sbjct: 216 LKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL 275
Query: 181 KFHEGHIRSIDFHPLEFLLATGSA--DRTVKFW 211
+ H + S HP E ++A+ + D+T+K W
Sbjct: 276 QGHTDVVISTACHPTENIIASAALENDKTIKLW 308
Score = 101 bits (251), Expect = 2e-21, Method: Composition-based stats.
Identities = 65/250 (26%), Positives = 111/250 (44%), Gaps = 12/250 (4%)
Query: 53 SLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFG 112
+L G + V SV F + + ++ +IK+W + K +T++GHK + V +
Sbjct: 18 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 77
Query: 113 EFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLT 172
S D LKIWD+ C+ T KGH+ + F P +VSG FD V++WD+
Sbjct: 78 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 137
Query: 173 AGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFE----LIGSTRPEVTG 228
GK L H + ++ F+ L+ + S D + WD + + LI P V+
Sbjct: 138 TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 197
Query: 229 VHAITFHPDGRTLFSG-FDDNLKVYSWEPVICHDSV----DMGWSTLGDLCINDGKLLGC 283
V F P+G+ + + D+ LK++ + C + + + + + GK +
Sbjct: 198 V---KFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 254
Query: 284 SFYRNSVGIW 293
N V IW
Sbjct: 255 GSEDNLVYIW 264
Score = 96.3 bits (238), Expect = 8e-20, Method: Composition-based stats.
Identities = 57/226 (25%), Positives = 107/226 (47%), Gaps = 6/226 (2%)
Query: 30 FLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEE 89
L++ DD+ + +W + L +L G S+ V F+ L+++G+ +++WD++
Sbjct: 79 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 138
Query: 90 SKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTY-KGHTRGINTI 148
K ++TL H +AV F+ G S D +IWD C+ T ++ +
Sbjct: 139 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFV 198
Query: 149 RFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFL----LATGSA 204
+F+P+G+++++ DN +K+WD + GK L + H+ I F + +GS
Sbjct: 199 KFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI-FANFSVTGGKWIVSGSE 257
Query: 205 DRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGFDDNLK 250
D V W+L+T E++ + V + HP + S +N K
Sbjct: 258 DNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDK 303
Score = 95.1 bits (235), Expect = 2e-19, Method: Composition-based stats.
Identities = 61/260 (23%), Positives = 118/260 (45%), Gaps = 13/260 (5%)
Query: 3 KRGYKLQ-EFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPV 61
K Y L+ H+ V+ + +L + D+ + +W ++ G +
Sbjct: 10 KPNYALKFTLAGHTKAVSSVKFSPNG-EWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 68
Query: 62 DSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMD 121
VA+ S L+++ + +K+WD+ K ++TL GH + F+P SG D
Sbjct: 69 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 128
Query: 122 TNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFK 181
+++IWD++ C+ T H+ ++ + F DG +VS +D + ++WD +G+ L
Sbjct: 129 ESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI 188
Query: 182 FHEG-HIRSIDFHPLEFLLATGSADRTVKFWD------LETFELIGSTRPEVTGVHAITF 234
+ + + F P + + D T+K WD L+T+ + + + ++T
Sbjct: 189 DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVT- 247
Query: 235 HPDGRTLFSGFDDNLKVYSW 254
G+ + SG +DNL VY W
Sbjct: 248 --GGKWIVSGSEDNL-VYIW 264
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 104 bits (260), Expect = 3e-22, Method: Composition-based stats.
Identities = 60/213 (28%), Positives = 109/213 (51%), Gaps = 7/213 (3%)
Query: 5 GYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSV 64
G L+ HS V C + ++ +++G D+ V +W + L +L S PV +V
Sbjct: 98 GKCLKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV 156
Query: 65 AFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSN-CTAVEFHPFGEFFASGCMDTN 123
F+ L+++ + G+ ++WD + ++TL + + V+F P G++ + +D
Sbjct: 157 HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT 216
Query: 124 LKIWDIRKKGCIHTYKGHTRGINTI--RFT-PDGRWVVSGGFDNVVKVWDLTAGKLLHDF 180
LK+WD K C+ TY GH I F+ G+W+VSG DN+V +W+L +++
Sbjct: 217 LKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL 276
Query: 181 KFHEGHIRSIDFHPLEFLLATGSA--DRTVKFW 211
+ H + S HP E ++A+ + D+T+K W
Sbjct: 277 QGHTDVVISTACHPTENIIASAALENDKTIKLW 309
Score = 101 bits (251), Expect = 2e-21, Method: Composition-based stats.
Identities = 65/250 (26%), Positives = 111/250 (44%), Gaps = 12/250 (4%)
Query: 53 SLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFG 112
+L G + V SV F + + ++ +IK+W + K +T++GHK + V +
Sbjct: 19 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 78
Query: 113 EFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLT 172
S D LKIWD+ C+ T KGH+ + F P +VSG FD V++WD+
Sbjct: 79 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 138
Query: 173 AGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFE----LIGSTRPEVTG 228
GK L H + ++ F+ L+ + S D + WD + + LI P V+
Sbjct: 139 TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 198
Query: 229 VHAITFHPDGRTLFSG-FDDNLKVYSWEPVICHDSV----DMGWSTLGDLCINDGKLLGC 283
V F P+G+ + + D+ LK++ + C + + + + + GK +
Sbjct: 199 V---KFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 255
Query: 284 SFYRNSVGIW 293
N V IW
Sbjct: 256 GSEDNLVYIW 265
Score = 96.3 bits (238), Expect = 8e-20, Method: Composition-based stats.
Identities = 57/226 (25%), Positives = 107/226 (47%), Gaps = 6/226 (2%)
Query: 30 FLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEE 89
L++ DD+ + +W + L +L G S+ V F+ L+++G+ +++WD++
Sbjct: 80 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 139
Query: 90 SKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTY-KGHTRGINTI 148
K ++TL H +AV F+ G S D +IWD C+ T ++ +
Sbjct: 140 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFV 199
Query: 149 RFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFL----LATGSA 204
+F+P+G+++++ DN +K+WD + GK L + H+ I F + +GS
Sbjct: 200 KFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI-FANFSVTGGKWIVSGSE 258
Query: 205 DRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGFDDNLK 250
D V W+L+T E++ + V + HP + S +N K
Sbjct: 259 DNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDK 304
Score = 95.1 bits (235), Expect = 2e-19, Method: Composition-based stats.
Identities = 61/260 (23%), Positives = 118/260 (45%), Gaps = 13/260 (5%)
Query: 3 KRGYKLQ-EFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPV 61
K Y L+ H+ V+ + +L + D+ + +W ++ G +
Sbjct: 11 KPNYALKFTLAGHTKAVSSVKFSPNG-EWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 69
Query: 62 DSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMD 121
VA+ S L+++ + +K+WD+ K ++TL GH + F+P SG D
Sbjct: 70 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 129
Query: 122 TNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFK 181
+++IWD++ C+ T H+ ++ + F DG +VS +D + ++WD +G+ L
Sbjct: 130 ESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI 189
Query: 182 FHEG-HIRSIDFHPLEFLLATGSADRTVKFWD------LETFELIGSTRPEVTGVHAITF 234
+ + + F P + + D T+K WD L+T+ + + + ++T
Sbjct: 190 DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVT- 248
Query: 235 HPDGRTLFSGFDDNLKVYSW 254
G+ + SG +DNL VY W
Sbjct: 249 --GGKWIVSGSEDNL-VYIW 265
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 104 bits (259), Expect = 3e-22, Method: Composition-based stats.
Identities = 60/213 (28%), Positives = 109/213 (51%), Gaps = 7/213 (3%)
Query: 5 GYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSV 64
G L+ HS V C + ++ +++G D+ V +W + L +L S PV +V
Sbjct: 103 GKCLKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV 161
Query: 65 AFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSN-CTAVEFHPFGEFFASGCMDTN 123
F+ L+++ + G+ ++WD + ++TL + + V+F P G++ + +D
Sbjct: 162 HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT 221
Query: 124 LKIWDIRKKGCIHTYKGHTRGINTI--RFT-PDGRWVVSGGFDNVVKVWDLTAGKLLHDF 180
LK+WD K C+ TY GH I F+ G+W+VSG DN+V +W+L +++
Sbjct: 222 LKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL 281
Query: 181 KFHEGHIRSIDFHPLEFLLATGSA--DRTVKFW 211
+ H + S HP E ++A+ + D+T+K W
Sbjct: 282 QGHTDVVISTACHPTENIIASAALENDKTIKLW 314
Score = 101 bits (251), Expect = 3e-21, Method: Composition-based stats.
Identities = 65/250 (26%), Positives = 111/250 (44%), Gaps = 12/250 (4%)
Query: 53 SLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFG 112
+L G + V SV F + + ++ +IK+W + K +T++GHK + V +
Sbjct: 24 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 83
Query: 113 EFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLT 172
S D LKIWD+ C+ T KGH+ + F P +VSG FD V++WD+
Sbjct: 84 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 143
Query: 173 AGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFE----LIGSTRPEVTG 228
GK L H + ++ F+ L+ + S D + WD + + LI P V+
Sbjct: 144 TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 203
Query: 229 VHAITFHPDGRTLFSG-FDDNLKVYSWEPVICHDSV----DMGWSTLGDLCINDGKLLGC 283
V F P+G+ + + D+ LK++ + C + + + + + GK +
Sbjct: 204 V---KFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 260
Query: 284 SFYRNSVGIW 293
N V IW
Sbjct: 261 GSEDNLVYIW 270
Score = 96.3 bits (238), Expect = 9e-20, Method: Composition-based stats.
Identities = 57/226 (25%), Positives = 107/226 (47%), Gaps = 6/226 (2%)
Query: 30 FLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEE 89
L++ DD+ + +W + L +L G S+ V F+ L+++G+ +++WD++
Sbjct: 85 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 144
Query: 90 SKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTY-KGHTRGINTI 148
K ++TL H +AV F+ G S D +IWD C+ T ++ +
Sbjct: 145 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFV 204
Query: 149 RFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFL----LATGSA 204
+F+P+G+++++ DN +K+WD + GK L + H+ I F + +GS
Sbjct: 205 KFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI-FANFSVTGGKWIVSGSE 263
Query: 205 DRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGFDDNLK 250
D V W+L+T E++ + V + HP + S +N K
Sbjct: 264 DNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDK 309
Score = 95.1 bits (235), Expect = 2e-19, Method: Composition-based stats.
Identities = 61/260 (23%), Positives = 118/260 (45%), Gaps = 13/260 (5%)
Query: 3 KRGYKLQ-EFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPV 61
K Y L+ H+ V+ + +L + D+ + +W ++ G +
Sbjct: 16 KPNYALKFTLAGHTKAVSSVKFSPNG-EWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 74
Query: 62 DSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMD 121
VA+ S L+++ + +K+WD+ K ++TL GH + F+P SG D
Sbjct: 75 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 134
Query: 122 TNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFK 181
+++IWD++ C+ T H+ ++ + F DG +VS +D + ++WD +G+ L
Sbjct: 135 ESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI 194
Query: 182 FHEG-HIRSIDFHPLEFLLATGSADRTVKFWD------LETFELIGSTRPEVTGVHAITF 234
+ + + F P + + D T+K WD L+T+ + + + ++T
Sbjct: 195 DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVT- 253
Query: 235 HPDGRTLFSGFDDNLKVYSW 254
G+ + SG +DNL VY W
Sbjct: 254 --GGKWIVSGSEDNL-VYIW 270
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 104 bits (259), Expect = 3e-22, Method: Composition-based stats.
Identities = 60/213 (28%), Positives = 109/213 (51%), Gaps = 7/213 (3%)
Query: 5 GYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSV 64
G L+ HS V C + ++ +++G D+ V +W + L +L S PV +V
Sbjct: 100 GKCLKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAV 158
Query: 65 AFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSN-CTAVEFHPFGEFFASGCMDTN 123
F+ L+++ + G+ ++WD + ++TL + + V+F P G++ + +D
Sbjct: 159 HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT 218
Query: 124 LKIWDIRKKGCIHTYKGHTRGINTI--RFT-PDGRWVVSGGFDNVVKVWDLTAGKLLHDF 180
LK+WD K C+ TY GH I F+ G+W+VSG DN+V +W+L +++
Sbjct: 219 LKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKL 278
Query: 181 KFHEGHIRSIDFHPLEFLLATGSA--DRTVKFW 211
+ H + S HP E ++A+ + D+T+K W
Sbjct: 279 QGHTDVVISTACHPTENIIASAALENDKTIKLW 311
Score = 100 bits (248), Expect = 6e-21, Method: Composition-based stats.
Identities = 69/258 (26%), Positives = 115/258 (44%), Gaps = 14/258 (5%)
Query: 47 KPT-ALM-SLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCT 104
KP ALM +L G + V SV F + + ++ +IK+W + K +T++GHK +
Sbjct: 13 KPNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS 72
Query: 105 AVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDN 164
V + S D LKIWD+ C+ T KGH+ + F P +VSG FD
Sbjct: 73 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 132
Query: 165 VVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFE----LIG 220
V++WD+ G L H + ++ F+ L+ + S D + WD + + LI
Sbjct: 133 SVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 192
Query: 221 STRPEVTGVHAITFHPDGRTLFSG-FDDNLKVYSWEPVICHDSV----DMGWSTLGDLCI 275
P V+ V F P+G+ + + D+ LK++ + C + + + + +
Sbjct: 193 DDNPPVSFV---KFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSV 249
Query: 276 NDGKLLGCSFYRNSVGIW 293
GK + N V IW
Sbjct: 250 TGGKWIVSGSEDNMVYIW 267
Score = 94.0 bits (232), Expect = 4e-19, Method: Composition-based stats.
Identities = 56/226 (24%), Positives = 106/226 (46%), Gaps = 6/226 (2%)
Query: 30 FLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEE 89
L++ DD+ + +W + L +L G S+ V F+ L+++G+ +++WD++
Sbjct: 82 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 141
Query: 90 SKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTY-KGHTRGINTI 148
++TL H +AV F+ G S D +IWD C+ T ++ +
Sbjct: 142 GMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFV 201
Query: 149 RFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFL----LATGSA 204
+F+P+G+++++ DN +K+WD + GK L + H+ I F + +GS
Sbjct: 202 KFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI-FANFSVTGGKWIVSGSE 260
Query: 205 DRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGFDDNLK 250
D V W+L+T E++ + V + HP + S +N K
Sbjct: 261 DNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDK 306
Score = 93.6 bits (231), Expect = 5e-19, Method: Composition-based stats.
Identities = 55/232 (23%), Positives = 109/232 (46%), Gaps = 11/232 (4%)
Query: 30 FLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEE 89
+L + D+ + +W ++ G + VA+ S L+++ + +K+WD+
Sbjct: 40 WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSS 99
Query: 90 SKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIR 149
K ++TL GH + F+P SG D +++IWD++ C+ T H+ ++ +
Sbjct: 100 GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVH 159
Query: 150 FTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEG-HIRSIDFHPLEFLLATGSADRTV 208
F DG +VS +D + ++WD +G+ L + + + F P + + D T+
Sbjct: 160 FNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTL 219
Query: 209 KFWD------LETFELIGSTRPEVTGVHAITFHPDGRTLFSGFDDNLKVYSW 254
K WD L+T+ + + + ++T G+ + SG +DN+ VY W
Sbjct: 220 KLWDYSKGKCLKTYTGHKNEKYCIFANFSVT---GGKWIVSGSEDNM-VYIW 267
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 103 bits (256), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 65/223 (29%), Positives = 111/223 (49%), Gaps = 23/223 (10%)
Query: 31 LITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEES 90
+++G DD + +W+ L +L G + V S + ++++G++ +K+W+ E
Sbjct: 132 IVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQM--RDNIIISGSTDRTLKVWNAETG 189
Query: 91 KMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRF 150
+ + TL GH S + H + SG D L++WDI C+H GH + +++
Sbjct: 190 ECIHTLYGHTSTVRCMHLHE--KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY 247
Query: 151 TPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKF 210
DGR VVSG +D +VKVWD LH + H + S+ F + + +GS D +++
Sbjct: 248 --DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIH--VVSGSLDTSIRV 303
Query: 211 WDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGFD--DNLKV 251
WD+ET I H +T H ++L SG + DN+ V
Sbjct: 304 WDVETGNCI----------HTLTGH---QSLTSGMELKDNILV 333
Score = 102 bits (254), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 66/221 (29%), Positives = 112/221 (50%), Gaps = 14/221 (6%)
Query: 2 AKRGYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPV 61
A+ G + H++ V C+ + +K +++G D + +W I L L G + V
Sbjct: 186 AETGECIHTLYGHTSTVRCMHLHEKR---VVSGSRDATLRVWDIETGQCLHVLMGHVAAV 242
Query: 62 DSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMD 121
V +D V+ +GA ++K+WD E + TL GH + +++F G SG +D
Sbjct: 243 RCVQYDGRRVV--SGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFD--GIHVVSGSLD 298
Query: 122 TNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFK 181
T++++WD+ CIHT GH + + + +VSG D+ VK+WD+ G+ L +
Sbjct: 299 TSIRVWDVETGNCIHTLTGHQSLTSGMELKDNI--LVSGNADSTVKIWDIKTGQCLQTLQ 356
Query: 182 F---HEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELI 219
H+ + + F+ F++ T S D TVK WDL+T E I
Sbjct: 357 GPNKHQSAVTCLQFNK-NFVI-TSSDDGTVKLWDLKTGEFI 395
Score = 98.6 bits (244), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 61/218 (27%), Positives = 109/218 (50%), Gaps = 11/218 (5%)
Query: 2 AKRGYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPV 61
A G L+ V H+ V + +I+G D+ + +W + +L G +S V
Sbjct: 146 AVTGKCLRTLVGHTGGVWSSQMRDN---IIISGSTDRTLKVWNAETGECIHTLYGHTSTV 202
Query: 62 DSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMD 121
+ E V++G+ +++WD+E + + L GH + V++ G SG D
Sbjct: 203 RCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYD--GRRVVSGAYD 258
Query: 122 TNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFK 181
+K+WD + C+HT +GHT + +++F DG VVSG D ++VWD+ G +H
Sbjct: 259 FMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLT 316
Query: 182 FHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELI 219
H+ ++ + +L +G+AD TVK WD++T + +
Sbjct: 317 GHQSLTSGMELK--DNILVSGNADSTVKIWDIKTGQCL 352
Score = 83.2 bits (204), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 90/179 (50%), Gaps = 12/179 (6%)
Query: 5 GYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSV 64
G L + H A V C+ R +++G D V +W T L +L G ++ V S+
Sbjct: 229 GQCLHVLMGHVAAVRCVQYDG---RRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSL 285
Query: 65 AFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNL 124
FD + V++G+ I++WD+E + TLTGH+S + +E SG D+ +
Sbjct: 286 QFDG--IHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD--NILVSGNADSTV 341
Query: 125 KIWDIRKKGCIHTYKG---HTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDF 180
KIWDI+ C+ T +G H + ++F + +V++ D VK+WDL G+ + +
Sbjct: 342 KIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKN--FVITSSDDGTVKLWDLKTGEFIRNL 398
Score = 75.1 bits (183), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 84/174 (48%), Gaps = 12/174 (6%)
Query: 85 WDLEESKMVRTLTGHKSNC-TAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTR 143
W E K + L GH + T ++F G SG D LK+W C+ T GHT
Sbjct: 103 WRRGELKSPKVLKGHDDHVITCLQF--CGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTG 160
Query: 144 GINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGS 203
G+ + + + ++SG D +KVW+ G+ +H H +R + H E + +GS
Sbjct: 161 GVWSSQMRDNI--IISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGS 216
Query: 204 ADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSG-FDDNLKVYSWEP 256
D T++ WD+ET + + V V + + DGR + SG +D +KV W+P
Sbjct: 217 RDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKV--WDP 266
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 65/140 (46%), Gaps = 7/140 (5%)
Query: 120 MDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHD 179
+DTN + +++ + + H I ++F G +VSG DN +KVW GK L
Sbjct: 99 IDTNWRRGELKSPKVLKGHDDHV--ITCLQFC--GNRIVSGSDDNTLKVWSAVTGKCLRT 154
Query: 180 FKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGR 239
H G + S + ++ +GS DRT+K W+ ET E I + + V + H + R
Sbjct: 155 LVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH-EKR 211
Query: 240 TLFSGFDDNLKVYSWEPVIC 259
+ D L+V+ E C
Sbjct: 212 VVSGSRDATLRVWDIETGQC 231
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 102 bits (253), Expect = 1e-21, Method: Composition-based stats.
Identities = 59/213 (27%), Positives = 109/213 (51%), Gaps = 7/213 (3%)
Query: 5 GYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSV 64
G L+ HS V C + ++ +++G D+ V +W + L +L S PV +V
Sbjct: 100 GKCLKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV 158
Query: 65 AFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSN-CTAVEFHPFGEFFASGCMDTN 123
F+ L+++ + G+ ++WD + ++TL + + V+F P G++ + +D
Sbjct: 159 HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT 218
Query: 124 LKIWDIRKKGCIHTYKGHTRGINTI--RFT-PDGRWVVSGGFDNVVKVWDLTAGKLLHDF 180
LK+WD K C+ TY GH I F+ G+W+VSG DN+V +W+L +++
Sbjct: 219 LKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL 278
Query: 181 KFHEGHIRSIDFHPLEFLLATGSA--DRTVKFW 211
+ H + S HP E ++A+ + D+T+K +
Sbjct: 279 QGHTDVVISTACHPTENIIASAALENDKTIKLY 311
Score = 102 bits (253), Expect = 1e-21, Method: Composition-based stats.
Identities = 65/250 (26%), Positives = 111/250 (44%), Gaps = 12/250 (4%)
Query: 53 SLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFG 112
+L G + V SV F + + ++ +IK+W + K +T++GHK + V +
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 113 EFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLT 172
S D LKIWD+ C+ T KGH+ + F P +VSG FD V++WD+
Sbjct: 81 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 140
Query: 173 AGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFE----LIGSTRPEVTG 228
GK L H + ++ F+ L+ + S D + WD + + LI P V+
Sbjct: 141 TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 200
Query: 229 VHAITFHPDGRTLFSG-FDDNLKVYSWEPVICHDSV----DMGWSTLGDLCINDGKLLGC 283
V F P+G+ + + D+ LK++ + C + + + + + GK +
Sbjct: 201 V---KFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 257
Query: 284 SFYRNSVGIW 293
N V IW
Sbjct: 258 GSEDNLVYIW 267
Score = 97.4 bits (241), Expect = 4e-20, Method: Composition-based stats.
Identities = 58/231 (25%), Positives = 109/231 (47%), Gaps = 9/231 (3%)
Query: 30 FLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEE 89
L++ DD+ + +W + L +L G S+ V F+ L+++G+ +++WD++
Sbjct: 82 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 141
Query: 90 SKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTY-KGHTRGINTI 148
K ++TL H +AV F+ G S D +IWD C+ T ++ +
Sbjct: 142 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFV 201
Query: 149 RFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFL----LATGSA 204
+F+P+G+++++ DN +K+WD + GK L + H+ I F + +GS
Sbjct: 202 KFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI-FANFSVTGGKWIVSGSE 260
Query: 205 DRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGF---DDNLKVY 252
D V W+L+T E++ + V + HP + S D +K+Y
Sbjct: 261 DNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLY 311
Score = 96.3 bits (238), Expect = 9e-20, Method: Composition-based stats.
Identities = 61/260 (23%), Positives = 118/260 (45%), Gaps = 13/260 (5%)
Query: 3 KRGYKLQ-EFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPV 61
K Y L+ H+ V+ + +L + D+ + +W ++ G +
Sbjct: 13 KPNYALKFTLAGHTKAVSSVKFSPNG-EWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 71
Query: 62 DSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMD 121
VA+ S L+++ + +K+WD+ K ++TL GH + F+P SG D
Sbjct: 72 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 131
Query: 122 TNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFK 181
+++IWD++ C+ T H+ ++ + F DG +VS +D + ++WD +G+ L
Sbjct: 132 ESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI 191
Query: 182 FHEG-HIRSIDFHPLEFLLATGSADRTVKFWD------LETFELIGSTRPEVTGVHAITF 234
+ + + F P + + D T+K WD L+T+ + + + ++T
Sbjct: 192 DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVT- 250
Query: 235 HPDGRTLFSGFDDNLKVYSW 254
G+ + SG +DNL VY W
Sbjct: 251 --GGKWIVSGSEDNL-VYIW 267
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 102 bits (253), Expect = 1e-21, Method: Composition-based stats.
Identities = 65/250 (26%), Positives = 111/250 (44%), Gaps = 12/250 (4%)
Query: 53 SLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFG 112
+L G + V SV F + + ++ +IK+W + K +T++GHK + V +
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 113 EFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLT 172
S D LKIWD+ C+ T KGH+ + F P +VSG FD V++WD+
Sbjct: 81 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 140
Query: 173 AGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFE----LIGSTRPEVTG 228
GK L H + ++ F+ L+ + S D + WD + + LI P V+
Sbjct: 141 TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 200
Query: 229 VHAITFHPDGRTLFSG-FDDNLKVYSWEPVICHDSV----DMGWSTLGDLCINDGKLLGC 283
V F P+G+ + + D+ LK++ + C + + + + + GK +
Sbjct: 201 V---KFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 257
Query: 284 SFYRNSVGIW 293
N V IW
Sbjct: 258 GSEDNLVYIW 267
Score = 101 bits (252), Expect = 2e-21, Method: Composition-based stats.
Identities = 59/213 (27%), Positives = 109/213 (51%), Gaps = 7/213 (3%)
Query: 5 GYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSV 64
G L+ HS V C + ++ +++G D+ V +W + L +L S PV +V
Sbjct: 100 GKCLKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV 158
Query: 65 AFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSN-CTAVEFHPFGEFFASGCMDTN 123
F+ L+++ + G+ ++WD + ++TL + + V+F P G++ + +D
Sbjct: 159 HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT 218
Query: 124 LKIWDIRKKGCIHTYKGHTRGINTI--RFT-PDGRWVVSGGFDNVVKVWDLTAGKLLHDF 180
LK+WD K C+ TY GH I F+ G+W+VSG DN+V +W+L +++
Sbjct: 219 LKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL 278
Query: 181 KFHEGHIRSIDFHPLEFLLATGSA--DRTVKFW 211
+ H + S HP E ++A+ + D+T+K +
Sbjct: 279 QGHTDVVISTACHPTENIIASAALENDKTIKLF 311
Score = 97.1 bits (240), Expect = 5e-20, Method: Composition-based stats.
Identities = 57/226 (25%), Positives = 107/226 (47%), Gaps = 6/226 (2%)
Query: 30 FLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEE 89
L++ DD+ + +W + L +L G S+ V F+ L+++G+ +++WD++
Sbjct: 82 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 141
Query: 90 SKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTY-KGHTRGINTI 148
K ++TL H +AV F+ G S D +IWD C+ T ++ +
Sbjct: 142 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFV 201
Query: 149 RFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFL----LATGSA 204
+F+P+G+++++ DN +K+WD + GK L + H+ I F + +GS
Sbjct: 202 KFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI-FANFSVTGGKWIVSGSE 260
Query: 205 DRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGFDDNLK 250
D V W+L+T E++ + V + HP + S +N K
Sbjct: 261 DNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDK 306
Score = 96.3 bits (238), Expect = 9e-20, Method: Composition-based stats.
Identities = 61/260 (23%), Positives = 118/260 (45%), Gaps = 13/260 (5%)
Query: 3 KRGYKLQ-EFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPV 61
K Y L+ H+ V+ + +L + D+ + +W ++ G +
Sbjct: 13 KPNYALKFTLAGHTKAVSSVKFSPNG-EWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 71
Query: 62 DSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMD 121
VA+ S L+++ + +K+WD+ K ++TL GH + F+P SG D
Sbjct: 72 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 131
Query: 122 TNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFK 181
+++IWD++ C+ T H+ ++ + F DG +VS +D + ++WD +G+ L
Sbjct: 132 ESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI 191
Query: 182 FHEG-HIRSIDFHPLEFLLATGSADRTVKFWD------LETFELIGSTRPEVTGVHAITF 234
+ + + F P + + D T+K WD L+T+ + + + ++T
Sbjct: 192 DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVT- 250
Query: 235 HPDGRTLFSGFDDNLKVYSW 254
G+ + SG +DNL VY W
Sbjct: 251 --GGKWIVSGSEDNL-VYIW 267
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 101 bits (251), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 61/256 (23%), Positives = 116/256 (45%), Gaps = 23/256 (8%)
Query: 31 LITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEES 90
+++ +D + +W +L G + V ++FD + L+ + ++ IKLWD +
Sbjct: 123 MVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGF 182
Query: 91 KMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRF 150
+ +RT+ GH N ++V P G+ S D +K+W+++ C+ T+ GH + +R
Sbjct: 183 ECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRP 242
Query: 151 TPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLE-------------- 196
DG + S D V+VW + + + + H + I + P
Sbjct: 243 NQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETK 302
Query: 197 -------FLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGFDDN- 248
FLL+ GS D+T+K WD+ T + + V + FH G+ + S DD
Sbjct: 303 KSGKPGPFLLS-GSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKT 361
Query: 249 LKVYSWEPVICHDSVD 264
L+V+ ++ C +++
Sbjct: 362 LRVWDYKNKRCMKTLN 377
Score = 99.4 bits (246), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 92/193 (47%)
Query: 45 IGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCT 104
I +P +L G SPV V F ++++ + IK+WD E RTL GH +
Sbjct: 95 IPRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQ 154
Query: 105 AVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDN 164
+ F G+ AS D +K+WD + CI T GH ++++ P+G +VS D
Sbjct: 155 DISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDK 214
Query: 165 VVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRP 224
+K+W++ G + F H +R + + L+A+ S D+TV+ W + T E R
Sbjct: 215 TIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELRE 274
Query: 225 EVTGVHAITFHPD 237
V I++ P+
Sbjct: 275 HRHVVECISWAPE 287
Score = 77.8 bits (190), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 48/220 (21%), Positives = 91/220 (41%), Gaps = 21/220 (9%)
Query: 13 AHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVL 72
H NV+ +SI +++ D+ + +W + + + G V V + L
Sbjct: 190 GHDHNVSSVSIMPNG-DHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTL 248
Query: 73 VLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPF--------------------G 112
+ + ++ +++W + + L H+ + + P G
Sbjct: 249 IASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPG 308
Query: 113 EFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLT 172
F SG D +K+WD+ C+ T GH + + F G++++S D ++VWD
Sbjct: 309 PFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYK 368
Query: 173 AGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWD 212
+ + HE + S+DFH + TGS D+TVK W+
Sbjct: 369 NKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 408
Score = 75.9 bits (185), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/261 (21%), Positives = 108/261 (41%), Gaps = 22/261 (8%)
Query: 13 AHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVL 72
H+ +V IS + L + D + LW + ++ G V SV+
Sbjct: 148 GHTDSVQDISFDHSG-KLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDH 206
Query: 73 VLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKK 132
+++ + IK+W+++ V+T TGH+ V + G AS D +++W + K
Sbjct: 207 IVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATK 266
Query: 133 GCIHTYKGHTRGINTIRFTPD--------------------GRWVVSGGFDNVVKVWDLT 172
C + H + I + P+ G +++SG D +K+WD++
Sbjct: 267 ECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVS 326
Query: 173 AGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAI 232
G L H+ +R + FH + + + D+T++ WD + + + V ++
Sbjct: 327 TGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSL 386
Query: 233 TFHPDGRTLFSG-FDDNLKVY 252
FH + +G D +KV+
Sbjct: 387 DFHKTAPYVVTGSVDQTVKVW 407
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 72/159 (45%), Gaps = 1/159 (0%)
Query: 96 LTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGR 155
L+GH+S T V FHP S D +K+WD T KGHT + I F G+
Sbjct: 104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGK 163
Query: 156 WVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLET 215
+ S D +K+WD + + H+ ++ S+ P + + S D+T+K W+++T
Sbjct: 164 LLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQT 223
Query: 216 FELIGSTRPEVTGVHAITFHPDGRTLFSGFDDNLKVYSW 254
+ + V + + DG TL + ++ V W
Sbjct: 224 GYCVKTFTGHREWVRMVRPNQDG-TLIASCSNDQTVRVW 261
Score = 69.7 bits (169), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 55/101 (54%)
Query: 30 FLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEE 89
FL++G D+ + +W + LM+L G + V V F S +L+ A +++WD +
Sbjct: 310 FLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKN 369
Query: 90 SKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIR 130
+ ++TL H+ T+++FH + +G +D +K+W+ R
Sbjct: 370 KRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410
Score = 58.2 bits (139), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 53/120 (44%), Gaps = 1/120 (0%)
Query: 136 HTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPL 195
+ GH + + F P +VS D +KVWD G K H ++ I F
Sbjct: 102 YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHS 161
Query: 196 EFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGFDDNLKVYSWE 255
LLA+ SAD T+K WD + FE I + V +++ P+G + S D + WE
Sbjct: 162 GKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDK-TIKMWE 220
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 100 bits (249), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 57/201 (28%), Positives = 101/201 (50%), Gaps = 6/201 (2%)
Query: 56 GLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFF 115
G S+ V VA + ++ + ++LW+L+ + GH + +V F P
Sbjct: 65 GHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQI 124
Query: 116 ASGCMDTNLKIWDIRKKGCIHTYK--GHTRGINTIRFTP--DGRWVVSGGFDNVVKVWDL 171
SG D L++W+++ + C+HT HT ++ +RF+P D +VSGG+DN+VKVWDL
Sbjct: 125 VSGGRDNALRVWNVKGE-CMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDL 183
Query: 172 TAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHA 231
G+L+ D K H ++ S+ P L A+ D + WDL E + S ++
Sbjct: 184 ATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEAL-SEMAAGAPINQ 242
Query: 232 ITFHPDGRTLFSGFDDNLKVY 252
I F P+ + + + ++++
Sbjct: 243 ICFSPNRYWMCAATEKGIRIF 263
Score = 89.4 bits (220), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 65/248 (26%), Positives = 112/248 (45%), Gaps = 15/248 (6%)
Query: 13 AHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVL 72
HSA V+ +++ F ++ D + LW + G + V SVAF
Sbjct: 65 GHSAFVSDVALSNNG-NFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQ 123
Query: 73 VLAGASTGVIKLWDLEESKMVRTLT--GHKSNCTAVEFHPF--GEFFASGCMDTNLKIWD 128
+++G +++W+++ M TL+ H + V F P SG D +K+WD
Sbjct: 124 IVSGGRDNALRVWNVKGECM-HTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWD 182
Query: 129 IRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIR 188
+ + KGHT + ++ +PDG S D V ++WDLT G+ L + I
Sbjct: 183 LATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSEMA-AGAPIN 241
Query: 189 SIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTG-------VHAITFHPDGRTL 241
I F P + + + ++ ++ +DLE ++I PE G +I + DG TL
Sbjct: 242 QICFSPNRYWMCAAT-EKGIRIFDLENKDIIVELAPEHQGSKKIVPECVSIAWSADGSTL 300
Query: 242 FSGFDDNL 249
+SG+ DN+
Sbjct: 301 YSGYTDNV 308
Score = 86.7 bits (213), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 82/160 (51%), Gaps = 5/160 (3%)
Query: 94 RTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPD 153
R L GH + + V G F S D +L++W+++ C + + GHT+ + ++ F+PD
Sbjct: 61 RRLEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPD 120
Query: 154 GRWVVSGGFDNVVKVWDLTAGKLLHDFK--FHEGHIRSIDFHP-LEF-LLATGSADRTVK 209
R +VSGG DN ++VW++ G+ +H H + + F P L+ ++ +G D VK
Sbjct: 121 NRQIVSGGRDNALRVWNVK-GECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVK 179
Query: 210 FWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGFDDNL 249
WDL T L+ + V ++T PDG S D +
Sbjct: 180 VWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGV 219
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/168 (22%), Positives = 73/168 (43%), Gaps = 10/168 (5%)
Query: 13 AHSANVNCISIGKKA-CRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEV 71
AH+ V+C+ +++GG D V +W + + L G ++ V SV
Sbjct: 150 AHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGS 209
Query: 72 LVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRK 131
L + GV +LWDL + + + + + + F P ++ + ++I+D+
Sbjct: 210 LCASSDKDGVARLWDLTKGEALSEMAA-GAPINQICFSP-NRYWMCAATEKGIRIFDLEN 267
Query: 132 KGCIHTYKGHTRG-------INTIRFTPDGRWVVSGGFDNVVKVWDLT 172
K I +G +I ++ DG + SG DNV++VW ++
Sbjct: 268 KDIIVELAPEHQGSKKIVPECVSIAWSADGSTLYSGYTDNVIRVWGVS 315
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 90.5 bits (223), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 90/182 (49%), Gaps = 9/182 (4%)
Query: 61 VDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCM 120
+ SV F + GA +I++WD+E K+V L GH+ + ++++ P G+ SG
Sbjct: 126 IRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSG 185
Query: 121 DTNLKIWDIRKKGCIHTYKGHTRGINTIRFTP-DGRWVVSGGFDNVVKVWDLTAGKLLHD 179
D ++IWD+R C T G+ T+ +P DG+++ +G D V+VWD G L+
Sbjct: 186 DRTVRIWDLRTGQCSLTLSIED-GVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVER 244
Query: 180 FKF-------HEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAI 232
H+ + S+ F + +GS DR+VK W+L+ ++ +G +
Sbjct: 245 LDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEV 304
Query: 233 TF 234
T+
Sbjct: 305 TY 306
Score = 83.2 bits (204), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 84/157 (53%), Gaps = 10/157 (6%)
Query: 105 AVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDN 164
+V F P G+F A+G D ++IWDI + + +GH + I ++ + P G +VSG D
Sbjct: 128 SVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDR 187
Query: 165 VVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEF-LLATGSADRTVKFWDLET---FELIG 220
V++WDL G+ +G + ++ P + +A GS DR V+ WD ET E +
Sbjct: 188 TVRIWDLRTGQCSLTLSIEDG-VTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLD 246
Query: 221 STRPEVTG----VHAITFHPDGRTLFSG-FDDNLKVY 252
S TG V+++ F DG+++ SG D ++K++
Sbjct: 247 SENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLW 283
Score = 76.3 bits (186), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 52/204 (25%), Positives = 95/204 (46%), Gaps = 21/204 (10%)
Query: 29 RFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLE 88
+FL TG +D+ + +W I +M L G + S+ + + +++G+ +++WDL
Sbjct: 136 KFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLR 195
Query: 89 ESKMVRTLTGHKSNCTAVEFHPF-GEFFASGCMDTNLKIWDIRKKGCI-------HTYKG 140
+ TL+ + T V P G++ A+G +D +++WD + + G
Sbjct: 196 TGQCSLTLS-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTG 254
Query: 141 HTRGINTIRFTPDGRWVVSGGFDNVVKVWDL------------TAGKLLHDFKFHEGHIR 188
H + ++ FT DG+ VVSG D VK+W+L +G + H+ +
Sbjct: 255 HKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVL 314
Query: 189 SIDFHPLEFLLATGSADRTVKFWD 212
S+ + + +GS DR V FWD
Sbjct: 315 SVATTQNDEYILSGSKDRGVLFWD 338
Score = 70.9 bits (172), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 84/177 (47%), Gaps = 22/177 (12%)
Query: 99 HKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRG-------------- 144
H S V+F GE+ A+GC T +++ + + +
Sbjct: 63 HTSVVCCVKFSNDGEYLATGCNKTT-QVYRVSDGSLVARLSDDSAANKDPENLNTSSSPS 121
Query: 145 ----INTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLA 200
I ++ F+PDG+++ +G D ++++WD+ K++ + HE I S+D+ P L
Sbjct: 122 SDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLV 181
Query: 201 TGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHP-DGRTLFSG-FDDNLKVYSWE 255
+GS DRTV+ WDL T + + E GV + P DG+ + +G D ++V+ E
Sbjct: 182 SGSGDRTVRIWDLRTGQCSLTLSIE-DGVTTVAVSPGDGKYIAAGSLDRAVRVWDSE 237
Score = 66.6 bits (161), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 90/207 (43%), Gaps = 27/207 (13%)
Query: 31 LITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAE-VLVLAGASTGVIKLWDLEE 89
L++G D+ V +W + ++L + V +VA + + AG+ +++WD E
Sbjct: 180 LVSGSGDRTVRIWDLRTGQCSLTL-SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSET 238
Query: 90 SKMVRTL-------TGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKG--------- 133
+V L TGHK + +V F G+ SG +D ++K+W+++
Sbjct: 239 GFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPN 298
Query: 134 ---CIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSI 190
C TY GH + ++ T + +++SG D V WD +G L + H + S+
Sbjct: 299 SGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISV 358
Query: 191 ------DFHPLEFLLATGSADRTVKFW 211
P + ATGS D + W
Sbjct: 359 AVANGSSLGPEYNVFATGSGDCKARIW 385
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 39/180 (21%), Positives = 80/180 (44%), Gaps = 23/180 (12%)
Query: 135 IHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEG--------- 185
+H HT + ++F+ DG ++ +G + +V+ ++ G L+
Sbjct: 57 LHKSLDHTSVVCCVKFSNDGEYLATG-CNKTTQVYRVSDGSLVARLSDDSAANKDPENLN 115
Query: 186 ---------HIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHP 236
+IRS+ F P LATG+ DR ++ WD+E +++ + ++++ + P
Sbjct: 116 TSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFP 175
Query: 237 DGRTLFSGFDD-NLKVYSWEPVICH--DSVDMGWSTLGDLCINDGKLLGCSFYRNSVGIW 293
G L SG D ++++ C S++ G +T+ + DGK + +V +W
Sbjct: 176 SGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVA-VSPGDGKYIAAGSLDRAVRVW 234
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 89.7 bits (221), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 63/239 (26%), Positives = 113/239 (47%), Gaps = 9/239 (3%)
Query: 24 GKKACR--FLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGV 81
GK R ++I G DD ++ ++ ++ + S+A + VL+G+
Sbjct: 61 GKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLT 120
Query: 82 IKLWDLEESKMV-RTLTGHKSNCTAVEFHPFG-EFFASGCMDTNLKIWDIRKKGCIHTYK 139
+KLW+ E + + +T GH+ V F+P FASGC+D +K+W + + T
Sbjct: 121 VKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLT 180
Query: 140 -GHTRGINTIRFTP--DGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLE 196
G RG+N + + P D ++++ D +K+WD + + H ++ FHP
Sbjct: 181 TGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTL 240
Query: 197 FLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLF--SGFDDNLKVYS 253
++ +GS D T+K W+ T+++ + + I HP GR + SGFD+ V S
Sbjct: 241 PIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLS 299
Score = 75.1 bits (183), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/223 (25%), Positives = 100/223 (44%), Gaps = 10/223 (4%)
Query: 39 KVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTG 98
+V LW + S+ +PV + F + + ++ G+ I++++ + V
Sbjct: 36 RVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEA 95
Query: 99 HKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCI-HTYKGHTRGINTIRFTP-DGRW 156
H ++ HP + SG D +K+W+ + T++GH + + F P D
Sbjct: 96 HPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPST 155
Query: 157 VVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRS---IDFHPL--EFLLATGSADRTVKFW 211
SG D VKVW L G+ +F G R +D++PL + + T S D T+K W
Sbjct: 156 FASGCLDRTVKVWSL--GQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIW 213
Query: 212 DLETFELIGSTRPEVTGVHAITFHPDGRTLFSGFDDN-LKVYS 253
D +T + + ++ V FHP + SG +D LK+++
Sbjct: 214 DYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 95/214 (44%), Gaps = 18/214 (8%)
Query: 58 SSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFAS 117
S V + F E VL +G ++LW+ E VR++ ++ A +F +
Sbjct: 13 SDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIV 72
Query: 118 GCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLL 177
G D +++++ + ++ H I +I P +V+SG D VK+W+ L
Sbjct: 73 GSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWAL 132
Query: 178 HD-FKFHEGHIRSIDFHPLE-FLLATGSADRTVKFWDLETFELIGSTRPEVT-------G 228
F+ HE + + F+P + A+G DRTVK W L G + P T G
Sbjct: 133 EQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL------GQSTPNFTLTTGQERG 186
Query: 229 VHAITFH--PDGRTLFSGFDD-NLKVYSWEPVIC 259
V+ + ++ PD + + DD +K++ ++ C
Sbjct: 187 VNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSC 220
Score = 58.2 bits (139), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 56/123 (45%), Gaps = 3/123 (2%)
Query: 9 QEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSL-CGLSSPVDSVAFD 67
Q F H V C++ K +G D+ V +W++G+ T +L G V+ V +
Sbjct: 134 QTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYY 193
Query: 68 SA--EVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLK 125
+ ++ + IK+WD + V TL GH SN + FHP SG D LK
Sbjct: 194 PLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLK 253
Query: 126 IWD 128
IW+
Sbjct: 254 IWN 256
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 76/163 (46%), Gaps = 3/163 (1%)
Query: 94 RTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPD 153
+T + ++FHP + + +++W+ + + + + + +F
Sbjct: 7 KTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIAR 66
Query: 154 GRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDL 213
W++ G D ++V++ G+ + DF+ H +IRSI HP + + +GS D TVK W+
Sbjct: 67 KNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNW 126
Query: 214 E-TFELIGSTRPEVTGVHAITFHP-DGRTLFSG-FDDNLKVYS 253
E + L + V + F+P D T SG D +KV+S
Sbjct: 127 ENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWS 169
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 89.7 bits (221), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 63/239 (26%), Positives = 113/239 (47%), Gaps = 9/239 (3%)
Query: 24 GKKACR--FLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGV 81
GK R ++I G DD ++ ++ ++ + S+A + VL+G+
Sbjct: 61 GKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLT 120
Query: 82 IKLWDLEESKMV-RTLTGHKSNCTAVEFHPFG-EFFASGCMDTNLKIWDIRKKGCIHTYK 139
+KLW+ E + + +T GH+ V F+P FASGC+D +K+W + + T
Sbjct: 121 VKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLT 180
Query: 140 -GHTRGINTIRFTP--DGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLE 196
G RG+N + + P D ++++ D +K+WD + + H ++ FHP
Sbjct: 181 TGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTL 240
Query: 197 FLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLF--SGFDDNLKVYS 253
++ +GS D T+K W+ T+++ + + I HP GR + SGFD+ V S
Sbjct: 241 PIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLS 299
Score = 75.1 bits (183), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/223 (25%), Positives = 100/223 (44%), Gaps = 10/223 (4%)
Query: 39 KVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTG 98
+V LW + S+ +PV + F + + ++ G+ I++++ + V
Sbjct: 36 RVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEA 95
Query: 99 HKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCI-HTYKGHTRGINTIRFTP-DGRW 156
H ++ HP + SG D +K+W+ + T++GH + + F P D
Sbjct: 96 HPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPST 155
Query: 157 VVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRS---IDFHPL--EFLLATGSADRTVKFW 211
SG D VKVW L G+ +F G R +D++PL + + T S D T+K W
Sbjct: 156 FASGCLDRTVKVWSL--GQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIW 213
Query: 212 DLETFELIGSTRPEVTGVHAITFHPDGRTLFSGFDDN-LKVYS 253
D +T + + ++ V FHP + SG +D LK+++
Sbjct: 214 DYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 95/214 (44%), Gaps = 18/214 (8%)
Query: 58 SSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFAS 117
S V + F E VL +G ++LW+ E VR++ ++ A +F +
Sbjct: 13 SDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIV 72
Query: 118 GCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLL 177
G D +++++ + ++ H I +I P +V+SG D VK+W+ L
Sbjct: 73 GSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWAL 132
Query: 178 HD-FKFHEGHIRSIDFHPLE-FLLATGSADRTVKFWDLETFELIGSTRPEVT-------G 228
F+ HE + + F+P + A+G DRTVK W L G + P T G
Sbjct: 133 EQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL------GQSTPNFTLTTGQERG 186
Query: 229 VHAITFH--PDGRTLFSGFDD-NLKVYSWEPVIC 259
V+ + ++ PD + + DD +K++ ++ C
Sbjct: 187 VNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSC 220
Score = 58.2 bits (139), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 56/123 (45%), Gaps = 3/123 (2%)
Query: 9 QEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSL-CGLSSPVDSVAFD 67
Q F H V C++ K +G D+ V +W++G+ T +L G V+ V +
Sbjct: 134 QTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYY 193
Query: 68 SA--EVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLK 125
+ ++ + IK+WD + V TL GH SN + FHP SG D LK
Sbjct: 194 PLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLK 253
Query: 126 IWD 128
IW+
Sbjct: 254 IWN 256
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 76/163 (46%), Gaps = 3/163 (1%)
Query: 94 RTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPD 153
+T + ++FHP + + +++W+ + + + + + +F
Sbjct: 7 KTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIAR 66
Query: 154 GRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDL 213
W++ G D ++V++ G+ + DF+ H +IRSI HP + + +GS D TVK W+
Sbjct: 67 KNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNW 126
Query: 214 E-TFELIGSTRPEVTGVHAITFHP-DGRTLFSG-FDDNLKVYS 253
E + L + V + F+P D T SG D +KV+S
Sbjct: 127 ENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWS 169
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 89.7 bits (221), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 66/245 (26%), Positives = 111/245 (45%), Gaps = 26/245 (10%)
Query: 29 RFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWD-L 87
+F ++G D ++ LW + + G + V SVAF +++ + IKLW+ L
Sbjct: 443 QFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTL 502
Query: 88 EESKMVRTL--TGHKSNCTAVEFHP--FGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTR 143
E K + GH+ + V F P S D +K+W++ T GHT
Sbjct: 503 GECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTG 562
Query: 144 GINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGS 203
++T+ +PDG SGG D VV +WDL GK L+ + + I ++ F P + L +
Sbjct: 563 YVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANS-VIHALCFSPNRYWLCAAT 621
Query: 204 ADRTVKFWDLETFELI-------------------GSTRPEVTGVHAITFHPDGRTLFSG 244
+ +K WDLE+ ++ +T+ +V ++ + DG TLFSG
Sbjct: 622 -EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSG 680
Query: 245 FDDNL 249
+ D +
Sbjct: 681 YTDGV 685
Score = 89.4 bits (220), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 67/254 (26%), Positives = 112/254 (44%), Gaps = 13/254 (5%)
Query: 13 AHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKP-----TALMSLCGLSSPVDSVAFD 67
AH+ V I+ +++ D+ + LW + K A L G S V+ V
Sbjct: 380 AHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLS 439
Query: 68 SAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIW 127
S L+G+ G ++LWDL R GH + +V F S D +K+W
Sbjct: 440 SDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLW 499
Query: 128 DIRKKGCIHTY----KGHTRGINTIRFTPDGRW--VVSGGFDNVVKVWDLTAGKLLHDFK 181
+ + C +T +GH ++ +RF+P+ +VS +D VKVW+L+ KL
Sbjct: 500 NTLGE-CKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLA 558
Query: 182 FHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTL 241
H G++ ++ P L A+G D V WDL + + S +HA+ F P+ L
Sbjct: 559 GHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSV-IHALCFSPNRYWL 617
Query: 242 FSGFDDNLKVYSWE 255
+ + +K++ E
Sbjct: 618 CAATEHGIKIWDLE 631
Score = 75.5 bits (184), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 66/249 (26%), Positives = 107/249 (42%), Gaps = 33/249 (13%)
Query: 66 FDSAEVLVLAGASTGVIKLWDLEESKMV-----RTLTGHKSNCTAVEFHPFGEFFASGCM 120
D+A+++V A +I LW L + R LTGH V G+F SG
Sbjct: 392 IDNADIIVSASRDKSII-LWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSW 450
Query: 121 DTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDF 180
D L++WD+ + GHT+ + ++ F+ D R +VS D +K+W+ T G+ +
Sbjct: 451 DGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWN-TLGECKYTI 509
Query: 181 -KFHEGH---IRSIDFHP--LEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITF 234
+ EGH + + F P L+ + + S D+TVK W+L +L + V +
Sbjct: 510 SEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAV 569
Query: 235 HPDGRTLFSGFDDNL----------KVYSWEPVICHDSVDMGWSTLGDLCINDGKLLGCS 284
PDG SG D + K+YS E S + LC + + C+
Sbjct: 570 SPDGSLCASGGKDGVVLLWDLAEGKKLYSLEAN----------SVIHALCFSPNRYWLCA 619
Query: 285 FYRNSVGIW 293
+ + IW
Sbjct: 620 ATEHGIKIW 628
Score = 50.1 bits (118), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 73/179 (40%), Gaps = 22/179 (12%)
Query: 13 AHSANVNCISIGKKACR-FLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEV 71
H V+C+ + +++ D+ V +W + +L G + V +VA
Sbjct: 515 GHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGS 574
Query: 72 LVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRK 131
L +G GV+ LWDL E K + +L + S A+ F P ++ + +KIWD+
Sbjct: 575 LCASGGKDGVVLLWDLAEGKKLYSLEAN-SVIHALCFSP-NRYWLCAATEHGIKIWDLES 632
Query: 132 KGCIHTYKGHTRG-------------------INTIRFTPDGRWVVSGGFDNVVKVWDL 171
K + K + ++ ++ DG + SG D V++VW +
Sbjct: 633 KSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGI 691
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 89.0 bits (219), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 66/244 (27%), Positives = 116/244 (47%), Gaps = 13/244 (5%)
Query: 3 KRGYKLQEFVAHSANVNCISIG---KKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSS 59
+ G ++ AH + ++ G K+ ++TG D V +W +
Sbjct: 20 QYGILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGH 79
Query: 60 PVDSVAFDSAEVLVLAGAST--GVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFAS 117
+ V+ D + L +A +S+ I+LWDLE K ++++ + + F P ++ A+
Sbjct: 80 QLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLAT 139
Query: 118 GCMDTNLKIWDIR--KKGCIHTYKGHTRG--INTIRFTPDGRWVVSGGFDNVVKVWDLTA 173
G + I+ + KK Y TRG I +I ++PDG+++ SG D ++ ++D+
Sbjct: 140 GTHVGKVNIFGVESGKK----EYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIAT 195
Query: 174 GKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAIT 233
GKLLH + H IRS+ F P LL T S D +K +D++ L G+ + V +
Sbjct: 196 GKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVA 255
Query: 234 FHPD 237
F PD
Sbjct: 256 FCPD 259
Score = 69.3 bits (168), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 76/142 (53%)
Query: 29 RFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLE 88
++L +G D +N++ I L +L G + P+ S+ F L++ + G IK++D++
Sbjct: 177 KYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQ 236
Query: 89 ESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTI 148
+ + TL+GH S V F P F S D ++K+WD+ + C+HT+ H + +
Sbjct: 237 HANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGV 296
Query: 149 RFTPDGRWVVSGGFDNVVKVWD 170
++ +G +VS G D + ++D
Sbjct: 297 KYNGNGSKIVSVGDDQEIHIYD 318
Score = 57.4 bits (137), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 75/164 (45%)
Query: 29 RFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLE 88
++L TG KVN++ + SL + S+A+ + +GA G+I ++D+
Sbjct: 135 QYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIA 194
Query: 89 ESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTI 148
K++ TL GH ++ F P + + D +KI+D++ T GH + +
Sbjct: 195 TGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNV 254
Query: 149 RFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDF 192
F PD VS D VKVWD+ +H F H+ + + +
Sbjct: 255 AFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKY 298
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 88.6 bits (218), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 69/261 (26%), Positives = 122/261 (46%), Gaps = 13/261 (4%)
Query: 21 ISIGKKACR--FLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGAS 78
+ GK R ++I G DD ++ ++ ++ + S+A + VL+G+
Sbjct: 58 VRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSD 117
Query: 79 TGVIKLWDLEES-KMVRTLTGHKSNCTAVEFHPFG-EFFASGCMDTNLKIWDIRKKGCIH 136
+KLW+ E + + +T GH+ V F+P FASGC+D +K+W + +
Sbjct: 118 DLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNF 177
Query: 137 TYK-GHTRGINTIRFTP--DGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFH 193
T G RG+N + + P D ++++ D +K+WD + + H ++ FH
Sbjct: 178 TLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFH 237
Query: 194 PLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLF--SGFDDNLKV 251
P ++ +GS D T+K W+ T+++ + + I HP GR + SGFD+ V
Sbjct: 238 PTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTV 297
Query: 252 YSW---EPVICHDSV-DMGWS 268
S EP + D V + WS
Sbjct: 298 LSLGNDEPTLSLDPVGKLVWS 318
Score = 72.0 bits (175), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/223 (24%), Positives = 100/223 (44%), Gaps = 10/223 (4%)
Query: 39 KVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTG 98
+V +W + S+ +PV + F + + ++ G+ I++++ + V
Sbjct: 36 RVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEA 95
Query: 99 HKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCI-HTYKGHTRGINTIRFTP-DGRW 156
H ++ HP + SG D +K+W+ + T++GH + + F P D
Sbjct: 96 HPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPST 155
Query: 157 VVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRS---IDFHPL--EFLLATGSADRTVKFW 211
SG D VKVW L G+ +F G R +D++PL + + T S D T+K W
Sbjct: 156 FASGCLDRTVKVWSL--GQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIW 213
Query: 212 DLETFELIGSTRPEVTGVHAITFHPDGRTLFSGFDDN-LKVYS 253
D +T + + ++ V FHP + SG +D LK+++
Sbjct: 214 DYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 76/163 (46%), Gaps = 3/163 (1%)
Query: 94 RTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPD 153
+T + ++FHP + + ++IW+ + + + + + +F
Sbjct: 7 KTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIAR 66
Query: 154 GRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDL 213
W++ G D ++V++ G+ + DF+ H +IRSI HP + + +GS D TVK W+
Sbjct: 67 KNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNW 126
Query: 214 E-TFELIGSTRPEVTGVHAITFHP-DGRTLFSG-FDDNLKVYS 253
E + L + V + F+P D T SG D +KV+S
Sbjct: 127 ENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWS 169
Score = 56.6 bits (135), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 52/214 (24%), Positives = 95/214 (44%), Gaps = 18/214 (8%)
Query: 58 SSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFAS 117
S V + F E VL +G +++W+ E VR++ ++ A +F +
Sbjct: 13 SDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIV 72
Query: 118 GCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLL 177
G D +++++ + ++ H I +I P +V+SG D VK+W+ L
Sbjct: 73 GSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWAL 132
Query: 178 HD-FKFHEGHIRSIDFHPLE-FLLATGSADRTVKFWDLETFELIGSTRPEVT-------G 228
F+ HE + + F+P + A+G DRTVK W L G + P T G
Sbjct: 133 EQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL------GQSTPNFTLTTGQERG 186
Query: 229 VHAITFH--PDGRTLFSGFDD-NLKVYSWEPVIC 259
V+ + ++ PD + + DD +K++ ++ C
Sbjct: 187 VNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSC 220
Score = 56.2 bits (134), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 71/173 (41%), Gaps = 30/173 (17%)
Query: 9 QEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSL-CGLSSPVDSVAFD 67
Q F H V C++ K +G D+ V +W++G+ T +L G V+ V +
Sbjct: 134 QTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYY 193
Query: 68 SA--EVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLK 125
+ ++ + IK+WD + V TL GH SN + FHP SG D LK
Sbjct: 194 PLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLK 253
Query: 126 IWD-------------IRKKGCIHTYKGHTRGINTIRFTPDGRW-VVSGGFDN 164
IW+ + + CI T+ P GR ++ GFDN
Sbjct: 254 IWNSSTYKVEKTLNVGLERSWCIATH-------------PTGRKNYIASGFDN 293
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 87.8 bits (216), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 71/268 (26%), Positives = 123/268 (45%), Gaps = 19/268 (7%)
Query: 24 GKKACR--FLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGV 81
GK R ++I G DD ++ ++ ++ + S+A + VL+G+
Sbjct: 61 GKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLT 120
Query: 82 IKLWDLEES-KMVRTLTGHKSNCTAVEFHPFG-EFFASGCMDTNLKIWDIRKKGCIHTYK 139
+KLW+ E + + +T GH+ V F+P FASGC+D +K+W + + T
Sbjct: 121 VKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLT 180
Query: 140 -GHTRGINTIRFTP--DGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLE 196
G RG+N + + P D ++++ D +K+WD + + H ++ FHP
Sbjct: 181 TGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTL 240
Query: 197 FLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLF--SGFDDNLKVYSW 254
++ +GS D T+K W+ T+++ + + I HP GR + SGFD+ V S
Sbjct: 241 PIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSL 300
Query: 255 ---EPVICHDSVDMGWSTLGDLCINDGK 279
EP + D V G L + GK
Sbjct: 301 GNDEPTLSLDPV-------GKLVWSGGK 321
Score = 72.4 bits (176), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/223 (25%), Positives = 100/223 (44%), Gaps = 10/223 (4%)
Query: 39 KVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTG 98
+V LW + S+ +PV + F + + ++ G+ I++++ + V
Sbjct: 36 RVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEA 95
Query: 99 HKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCI-HTYKGHTRGINTIRFTP-DGRW 156
H ++ HP + SG D +K+W+ + T++GH + + F P D
Sbjct: 96 HPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPST 155
Query: 157 VVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRS---IDFHPL--EFLLATGSADRTVKFW 211
SG D VKVW L G+ +F G R +D++PL + + T S D T+K W
Sbjct: 156 FASGCLDRTVKVWSL--GQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIW 213
Query: 212 DLETFELIGSTRPEVTGVHAITFHPDGRTLFSGFDDN-LKVYS 253
D +T + + ++ V FHP + SG +D LK+++
Sbjct: 214 DYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
Score = 57.0 bits (136), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 95/214 (44%), Gaps = 18/214 (8%)
Query: 58 SSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFAS 117
S V + F E VL +G ++LW+ E VR++ ++ A +F +
Sbjct: 13 SDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIV 72
Query: 118 GCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLL 177
G D +++++ + ++ H I +I P +V+SG D VK+W+ L
Sbjct: 73 GSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWAL 132
Query: 178 HD-FKFHEGHIRSIDFHPLE-FLLATGSADRTVKFWDLETFELIGSTRPEVT-------G 228
F+ HE + + F+P + A+G DRTVK W L G + P T G
Sbjct: 133 EQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL------GQSTPNFTLTTGQERG 186
Query: 229 VHAITFH--PDGRTLFSGFDD-NLKVYSWEPVIC 259
V+ + ++ PD + + DD +K++ ++ C
Sbjct: 187 VNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSC 220
Score = 56.2 bits (134), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 56/123 (45%), Gaps = 3/123 (2%)
Query: 9 QEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSL-CGLSSPVDSVAFD 67
Q F H V C++ K +G D+ V +W++G+ T +L G V+ V +
Sbjct: 134 QTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYY 193
Query: 68 SA--EVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLK 125
+ ++ + IK+WD + V TL GH SN + FHP SG D LK
Sbjct: 194 PLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLK 253
Query: 126 IWD 128
IW+
Sbjct: 254 IWN 256
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 76/163 (46%), Gaps = 3/163 (1%)
Query: 94 RTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPD 153
+T + ++FHP + + +++W+ + + + + + +F
Sbjct: 7 KTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIAR 66
Query: 154 GRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDL 213
W++ G D ++V++ G+ + DF+ H +IRSI HP + + +GS D TVK W+
Sbjct: 67 KNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNW 126
Query: 214 E-TFELIGSTRPEVTGVHAITFHP-DGRTLFSG-FDDNLKVYS 253
E + L + V + F+P D T SG D +KV+S
Sbjct: 127 ENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWS 169
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 87.4 bits (215), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 69/262 (26%), Positives = 119/262 (45%), Gaps = 20/262 (7%)
Query: 3 KRGYKLQEFVAHSANV-NCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPV 61
K G ++ F HS V +C A + ++ D+ + LW + G S V
Sbjct: 53 KFGVPVRSFKGHSHIVQDCTLTADGA--YALSASWDKTLRLWDVATGETYQRFVGHKSDV 110
Query: 62 DSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEF------F 115
SV D ++++G+ IK+W ++ + + TL GH + V P +
Sbjct: 111 MSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTI 169
Query: 116 ASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGK 175
S D +K W++ + + GH INT+ +PDG + S G D + +W+L A K
Sbjct: 170 ISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKK 229
Query: 176 LLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGV------ 229
++ + + S+ F P + LA +A +K + L+ L+ RPE G
Sbjct: 230 AMYTLSAQD-EVFSLAFSPNRYWLAAATA-TGIKVFSLDPQYLVDDLRPEFAGYSKAAEP 287
Query: 230 HAIT--FHPDGRTLFSGFDDNL 249
HA++ + DG+TLF+G+ DN+
Sbjct: 288 HAVSLAWSADGQTLFAGYTDNV 309
Score = 58.2 bits (139), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/219 (21%), Positives = 87/219 (39%), Gaps = 56/219 (25%)
Query: 5 GYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSV 64
G Q FV H ++V + I KKA +I+G D+ + +W I K L +L G + V V
Sbjct: 97 GETYQRFVGHKSDVMSVDIDKKAS-MIISGSRDKTIKVWTI-KGQCLATLLGHNDWVSQV 154
Query: 65 AF------DSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASG 118
D V +++ + ++K W+L + ++ GH SN + P G AS
Sbjct: 155 RVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASA 214
Query: 119 CMDTNLKIWDIRKKGCIHT----------------------------------------- 137
D + +W++ K ++T
Sbjct: 215 GKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDL 274
Query: 138 ---YKGHTRGIN----TIRFTPDGRWVVSGGFDNVVKVW 169
+ G+++ ++ ++ DG+ + +G DNV++VW
Sbjct: 275 RPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVW 313
Score = 56.2 bits (134), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 61/127 (48%), Gaps = 8/127 (6%)
Query: 95 TLTGHKSNCTAVEFHPFGE--FFASGCMDTNLKIW----DIRKKGC-IHTYKGHTRGINT 147
TL GH T++ G+ S D L W D +K G + ++KGH+ +
Sbjct: 12 TLEGHNGWVTSLATSA-GQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQD 70
Query: 148 IRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRT 207
T DG + +S +D +++WD+ G+ F H+ + S+D ++ +GS D+T
Sbjct: 71 CTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKT 130
Query: 208 VKFWDLE 214
+K W ++
Sbjct: 131 IKVWTIK 137
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 87.4 bits (215), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 69/262 (26%), Positives = 119/262 (45%), Gaps = 20/262 (7%)
Query: 3 KRGYKLQEFVAHSANV-NCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPV 61
K G ++ F HS V +C A + ++ D+ + LW + G S V
Sbjct: 53 KFGVPVRSFKGHSHIVQDCTLTADGA--YALSASWDKTLRLWDVATGETYQRFVGHKSDV 110
Query: 62 DSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEF------F 115
SV D ++++G+ IK+W ++ + + TL GH + V P +
Sbjct: 111 MSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTI 169
Query: 116 ASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGK 175
S D +K W++ + + GH INT+ +PDG + S G D + +W+L A K
Sbjct: 170 ISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKK 229
Query: 176 LLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGV------ 229
++ + + S+ F P + LA +A +K + L+ L+ RPE G
Sbjct: 230 AMYTLSAQD-EVFSLAFSPNRYWLAAATA-TGIKVFSLDPQYLVDDLRPEFAGYSAAAEP 287
Query: 230 HAIT--FHPDGRTLFSGFDDNL 249
HA++ + DG+TLF+G+ DN+
Sbjct: 288 HAVSLAWSADGQTLFAGYTDNV 309
Score = 56.6 bits (135), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 47/219 (21%), Positives = 86/219 (39%), Gaps = 56/219 (25%)
Query: 5 GYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSV 64
G Q FV H ++V + I KKA +I+G D+ + +W I K L +L G + V V
Sbjct: 97 GETYQRFVGHKSDVMSVDIDKKAS-MIISGSRDKTIKVWTI-KGQCLATLLGHNDWVSQV 154
Query: 65 AF------DSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASG 118
D V +++ + ++K W+L + ++ GH SN + P G AS
Sbjct: 155 RVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASA 214
Query: 119 CMDTNLKIWDIRKKGCIHT----------------------------------------- 137
D + +W++ K ++T
Sbjct: 215 GKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDL 274
Query: 138 ---YKGHTRGIN----TIRFTPDGRWVVSGGFDNVVKVW 169
+ G++ ++ ++ DG+ + +G DNV++VW
Sbjct: 275 RPEFAGYSAAAEPHAVSLAWSADGQTLFAGYTDNVIRVW 313
Score = 56.2 bits (134), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 61/127 (48%), Gaps = 8/127 (6%)
Query: 95 TLTGHKSNCTAVEFHPFGE--FFASGCMDTNLKIW----DIRKKGC-IHTYKGHTRGINT 147
TL GH T++ G+ S D L W D +K G + ++KGH+ +
Sbjct: 12 TLEGHNGWVTSLATSA-GQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQD 70
Query: 148 IRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRT 207
T DG + +S +D +++WD+ G+ F H+ + S+D ++ +GS D+T
Sbjct: 71 CTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKT 130
Query: 208 VKFWDLE 214
+K W ++
Sbjct: 131 IKVWTIK 137
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 87.0 bits (214), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 69/262 (26%), Positives = 119/262 (45%), Gaps = 20/262 (7%)
Query: 3 KRGYKLQEFVAHSANV-NCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPV 61
K G ++ F HS V +C A + ++ D+ + LW + G S V
Sbjct: 53 KFGVPVRSFKGHSHIVQDCTLTADGA--YALSASWDKTLRLWDVATGETYQRFVGHKSDV 110
Query: 62 DSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEF------F 115
SV D ++++G+ IK+W ++ + + TL GH + V P +
Sbjct: 111 MSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTI 169
Query: 116 ASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGK 175
S D +K W++ + + GH INT+ +PDG + S G D + +W+L A K
Sbjct: 170 ISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKK 229
Query: 176 LLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGV------ 229
++ + + S+ F P + LA +A +K + L+ L+ RPE G
Sbjct: 230 AMYTLSAQD-EVFSLAFSPNRYWLAAATA-TGIKVFSLDPQYLVDDLRPEFAGYSKAAEP 287
Query: 230 HAIT--FHPDGRTLFSGFDDNL 249
HA++ + DG+TLF+G+ DN+
Sbjct: 288 HAVSLAWSADGQTLFAGYTDNV 309
Score = 58.2 bits (139), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/219 (21%), Positives = 87/219 (39%), Gaps = 56/219 (25%)
Query: 5 GYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSV 64
G Q FV H ++V + I KKA +I+G D+ + +W I K L +L G + V V
Sbjct: 97 GETYQRFVGHKSDVMSVDIDKKAS-MIISGSRDKTIKVWTI-KGQCLATLLGHNDWVSQV 154
Query: 65 AF------DSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASG 118
D V +++ + ++K W+L + ++ GH SN + P G AS
Sbjct: 155 RVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASA 214
Query: 119 CMDTNLKIWDIRKKGCIHT----------------------------------------- 137
D + +W++ K ++T
Sbjct: 215 GKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDL 274
Query: 138 ---YKGHTRGIN----TIRFTPDGRWVVSGGFDNVVKVW 169
+ G+++ ++ ++ DG+ + +G DNV++VW
Sbjct: 275 RPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVW 313
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 61/127 (48%), Gaps = 8/127 (6%)
Query: 95 TLTGHKSNCTAVEFHPFGE--FFASGCMDTNLKIW----DIRKKGC-IHTYKGHTRGINT 147
TL GH T++ G+ S D L W D +K G + ++KGH+ +
Sbjct: 12 TLEGHNGWVTSLATSA-GQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQD 70
Query: 148 IRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRT 207
T DG + +S +D +++WD+ G+ F H+ + S+D ++ +GS D+T
Sbjct: 71 CTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKT 130
Query: 208 VKFWDLE 214
+K W ++
Sbjct: 131 IKVWTIK 137
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 87.0 bits (214), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 69/262 (26%), Positives = 119/262 (45%), Gaps = 20/262 (7%)
Query: 3 KRGYKLQEFVAHSANV-NCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPV 61
K G ++ F HS V +C A + ++ D+ + LW + G S V
Sbjct: 53 KFGVPVRSFKGHSHIVQDCTLTADGA--YALSASWDKTLRLWDVATGETYQRFVGHKSDV 110
Query: 62 DSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEF------F 115
SV D ++++G+ IK+W ++ + + TL GH + V P +
Sbjct: 111 MSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTI 169
Query: 116 ASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGK 175
S D +K W++ + + GH INT+ +PDG + S G D + +W+L A K
Sbjct: 170 ISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKK 229
Query: 176 LLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGV------ 229
++ + + S+ F P + LA +A +K + L+ L+ RPE G
Sbjct: 230 AMYTLSAQD-EVFSLAFSPNRYWLAAATA-TGIKVFSLDPQYLVDDLRPEFAGYSKAAEP 287
Query: 230 HAIT--FHPDGRTLFSGFDDNL 249
HA++ + DG+TLF+G+ DN+
Sbjct: 288 HAVSLAWSADGQTLFAGYTDNV 309
Score = 58.2 bits (139), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/219 (21%), Positives = 87/219 (39%), Gaps = 56/219 (25%)
Query: 5 GYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSV 64
G Q FV H ++V + I KKA +I+G D+ + +W I K L +L G + V V
Sbjct: 97 GETYQRFVGHKSDVMSVDIDKKAS-MIISGSRDKTIKVWTI-KGQCLATLLGHNDWVSQV 154
Query: 65 AF------DSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASG 118
D V +++ + ++K W+L + ++ GH SN + P G AS
Sbjct: 155 RVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASA 214
Query: 119 CMDTNLKIWDIRKKGCIHT----------------------------------------- 137
D + +W++ K ++T
Sbjct: 215 GKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDL 274
Query: 138 ---YKGHTRGIN----TIRFTPDGRWVVSGGFDNVVKVW 169
+ G+++ ++ ++ DG+ + +G DNV++VW
Sbjct: 275 RPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVW 313
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 61/127 (48%), Gaps = 8/127 (6%)
Query: 95 TLTGHKSNCTAVEFHPFGE--FFASGCMDTNLKIW----DIRKKGC-IHTYKGHTRGINT 147
TL GH T++ G+ S D L W D +K G + ++KGH+ +
Sbjct: 12 TLEGHNGWVTSLATSA-GQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQD 70
Query: 148 IRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRT 207
T DG + +S +D +++WD+ G+ F H+ + S+D ++ +GS D+T
Sbjct: 71 CTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKT 130
Query: 208 VKFWDLE 214
+K W ++
Sbjct: 131 IKVWTIK 137
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 86.7 bits (213), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 69/262 (26%), Positives = 119/262 (45%), Gaps = 20/262 (7%)
Query: 3 KRGYKLQEFVAHSANV-NCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPV 61
K G ++ F HS V +C A + ++ D+ + LW + G S V
Sbjct: 47 KFGVPVRSFKGHSHIVQDCTLTADGA--YALSASWDKTLRLWDVATGETYQRFVGHKSDV 104
Query: 62 DSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEF------F 115
SV D ++++G+ IK+W ++ + + TL GH + V P +
Sbjct: 105 MSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTI 163
Query: 116 ASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGK 175
S D +K W++ + + GH INT+ +PDG + S G D + +W+L A K
Sbjct: 164 ISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKK 223
Query: 176 LLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGV------ 229
++ + + S+ F P + LA +A +K + L+ L+ RPE G
Sbjct: 224 AMYTLSAQD-EVFSLAFSPNRYWLAAATA-TGIKVFSLDPQYLVDDLRPEFAGYSKAAEP 281
Query: 230 HAIT--FHPDGRTLFSGFDDNL 249
HA++ + DG+TLF+G+ DN+
Sbjct: 282 HAVSLAWSADGQTLFAGYTDNV 303
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/219 (21%), Positives = 87/219 (39%), Gaps = 56/219 (25%)
Query: 5 GYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSV 64
G Q FV H ++V + I KKA +I+G D+ + +W I K L +L G + V V
Sbjct: 91 GETYQRFVGHKSDVMSVDIDKKAS-MIISGSRDKTIKVWTI-KGQCLATLLGHNDWVSQV 148
Query: 65 AF------DSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASG 118
D V +++ + ++K W+L + ++ GH SN + P G AS
Sbjct: 149 RVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASA 208
Query: 119 CMDTNLKIWDIRKKGCIHT----------------------------------------- 137
D + +W++ K ++T
Sbjct: 209 GKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDL 268
Query: 138 ---YKGHTRGIN----TIRFTPDGRWVVSGGFDNVVKVW 169
+ G+++ ++ ++ DG+ + +G DNV++VW
Sbjct: 269 RPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVW 307
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 61/127 (48%), Gaps = 8/127 (6%)
Query: 95 TLTGHKSNCTAVEFHPFGE--FFASGCMDTNLKIW----DIRKKGC-IHTYKGHTRGINT 147
TL GH T++ G+ S D L W D +K G + ++KGH+ +
Sbjct: 6 TLEGHNGWVTSLATSA-GQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQD 64
Query: 148 IRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRT 207
T DG + +S +D +++WD+ G+ F H+ + S+D ++ +GS D+T
Sbjct: 65 CTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKT 124
Query: 208 VKFWDLE 214
+K W ++
Sbjct: 125 IKVWTIK 131
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 85.9 bits (211), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 69/262 (26%), Positives = 117/262 (44%), Gaps = 20/262 (7%)
Query: 3 KRGYKLQEFVAHSANV-NCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPV 61
K G ++ F HS V +C A + ++ D+ + LW + G S V
Sbjct: 53 KFGVPVRSFKGHSHIVQDCTLTADGA--YALSASWDKTLRLWDVATGETYQRFVGHKSDV 110
Query: 62 DSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEF------F 115
SV D +++G+ IK+W ++ + + TL GH + V P +
Sbjct: 111 XSVDIDKKASXIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTI 169
Query: 116 ASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGK 175
S D +K W++ + + GH INT+ +PDG + S G D + +W+L A K
Sbjct: 170 ISAGNDKXVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKK 229
Query: 176 LLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGV------ 229
+ + + S+ F P + LA +A +K + L+ L+ RPE G
Sbjct: 230 AXYTLSAQD-EVFSLAFSPNRYWLAAATA-TGIKVFSLDPQYLVDDLRPEFAGYSKAAEP 287
Query: 230 HAIT--FHPDGRTLFSGFDDNL 249
HA++ + DG+TLF+G+ DN+
Sbjct: 288 HAVSLAWSADGQTLFAGYTDNV 309
Score = 56.6 bits (135), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 47/219 (21%), Positives = 85/219 (38%), Gaps = 56/219 (25%)
Query: 5 GYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSV 64
G Q FV H ++V + I KKA +I+G D+ + +W I K L +L G + V V
Sbjct: 97 GETYQRFVGHKSDVXSVDIDKKASX-IISGSRDKTIKVWTI-KGQCLATLLGHNDWVSQV 154
Query: 65 AF------DSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASG 118
D V +++ + +K W+L + ++ GH SN + P G AS
Sbjct: 155 RVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASA 214
Query: 119 CMDTNLKIWDIRKKGCIHT----------------------------------------- 137
D + +W++ K +T
Sbjct: 215 GKDGEIXLWNLAAKKAXYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDL 274
Query: 138 ---YKGHTRGIN----TIRFTPDGRWVVSGGFDNVVKVW 169
+ G+++ ++ ++ DG+ + +G DNV++VW
Sbjct: 275 RPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVW 313
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 60/127 (47%), Gaps = 8/127 (6%)
Query: 95 TLTGHKSNCTAVEFHPFGE--FFASGCMDTNLKIW----DIRKKGC-IHTYKGHTRGINT 147
TL GH T++ G+ S D L W D +K G + ++KGH+ +
Sbjct: 12 TLEGHNGWVTSLATSA-GQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQD 70
Query: 148 IRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRT 207
T DG + +S +D +++WD+ G+ F H+ + S+D + +GS D+T
Sbjct: 71 CTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRDKT 130
Query: 208 VKFWDLE 214
+K W ++
Sbjct: 131 IKVWTIK 137
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 85.5 bits (210), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 69/279 (24%), Positives = 115/279 (41%), Gaps = 37/279 (13%)
Query: 2 AKRGYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPV 61
A+ G KL + AH V C + ++ T D+KV +W + + S V
Sbjct: 644 AETGEKLLDIKAHEDEVLCCAFSSDD-SYIATCSADKKVKIWDSATGKLVHTYDEHSEQV 702
Query: 62 DSVAF--DSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGC 119
+ F S +L+ G++ +KLWDL + + T+ GH ++ F P E AS
Sbjct: 703 NCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCS 762
Query: 120 MDTNLKIWDIRKKGCIHTYKGHTRGINTIRF--------------------TPDGRWVVS 159
D L++WD+R + IN RF + DG ++
Sbjct: 763 ADGTLRLWDVRS-------ANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIV 815
Query: 160 GGFDNVVKVWDLTAGKLLHDFKFHEGH---IRSIDFHPLEFLLATGSADRTVKFWDLETF 216
N V ++D+ LL + H GH I+ DF P + L + V+ W++++
Sbjct: 816 AA-KNKVLLFDIHTSGLLAE--IHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSR 872
Query: 217 ELIGSTRPEVTGVHAITFHPDGRTLFSGFDDNLKVYSWE 255
+ R ++ VH + F PDG + + DD + WE
Sbjct: 873 LKVADCRGHLSWVHGVMFSPDGSSFLTASDDQ-TIRVWE 910
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/207 (26%), Positives = 93/207 (44%), Gaps = 12/207 (5%)
Query: 48 PTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVE 107
P A +S C LS ++ VAF G G IK+ +L +++ + GHK ++
Sbjct: 960 PEAQVSCCCLSPHLEYVAF---------GDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQ 1010
Query: 108 FHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVK 167
F G+ S D+ +++W+ + + + H + R D R ++S FD VK
Sbjct: 1011 FTADGKTLISSSEDSVIQVWNWQTGDYVFL-QAHQETVKDFRLLQDSR-LLSWSFDGTVK 1068
Query: 168 VWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVT 227
VW++ G++ DF H+G + S ++ SAD+T K W + + +
Sbjct: 1069 VWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNG 1128
Query: 228 GVHAITFHPDGRTLFSGFDDNLKVYSW 254
V F DG L +G DDN ++ W
Sbjct: 1129 CVRCSAFSLDGILLATG-DDNGEIRIW 1154
Score = 57.4 bits (137), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 81/188 (43%), Gaps = 13/188 (6%)
Query: 73 VLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKK 132
+L+ + G +K+W++ ++ R T H+ + F+S D KIW
Sbjct: 1058 LLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLL 1117
Query: 133 GCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDF---------KFH 183
+H KGH + F+ DG + +G + +++W+++ G+LLH H
Sbjct: 1118 SPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATH 1177
Query: 184 EGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFS 243
G + + F P L SA +K+W++ T + + T + I PD RT +
Sbjct: 1178 GGWVTDVCFSPDSKTLV--SAGGYLKWWNVATGDSSQTFYTNGTNLKKIHVSPDFRTYVT 1235
Query: 244 GFDDNLKV 251
DNL +
Sbjct: 1236 V--DNLGI 1241
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 75/195 (38%), Gaps = 8/195 (4%)
Query: 56 GLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTG-----HKSNCTAVEFHP 110
GL P S + A++ TG + L + K ++ L+ H F
Sbjct: 567 GLCEPETSEVYRQAKLQAKQEGDTGRLYL-EWINKKTIKNLSRLVVRPHTDAVYHACFSQ 625
Query: 111 FGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWD 170
G+ AS D L+++ + K H + F+ D ++ + D VK+WD
Sbjct: 626 DGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWD 685
Query: 171 LTAGKLLHDFKFHEGHIRSIDF--HPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTG 228
GKL+H + H + F LLATGS D +K WDL E +
Sbjct: 686 SATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNS 745
Query: 229 VHAITFHPDGRTLFS 243
V+ F PD L S
Sbjct: 746 VNHCRFSPDDELLAS 760
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 85.5 bits (210), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 69/279 (24%), Positives = 115/279 (41%), Gaps = 37/279 (13%)
Query: 2 AKRGYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPV 61
A+ G KL + AH V C + ++ T D+KV +W + + S V
Sbjct: 651 AETGEKLLDIKAHEDEVLCCAFSSDD-SYIATCSADKKVKIWDSATGKLVHTYDEHSEQV 709
Query: 62 DSVAF--DSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGC 119
+ F S +L+ G++ +KLWDL + + T+ GH ++ F P E AS
Sbjct: 710 NCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCS 769
Query: 120 MDTNLKIWDIRKKGCIHTYKGHTRGINTIRF--------------------TPDGRWVVS 159
D L++WD+R + IN RF + DG ++
Sbjct: 770 ADGTLRLWDVRS-------ANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIV 822
Query: 160 GGFDNVVKVWDLTAGKLLHDFKFHEGH---IRSIDFHPLEFLLATGSADRTVKFWDLETF 216
N V ++D+ LL + H GH I+ DF P + L + V+ W++++
Sbjct: 823 AA-KNKVLLFDIHTSGLLAE--IHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSR 879
Query: 217 ELIGSTRPEVTGVHAITFHPDGRTLFSGFDDNLKVYSWE 255
+ R ++ VH + F PDG + + DD + WE
Sbjct: 880 LKVADCRGHLSWVHGVMFSPDGSSFLTASDDQ-TIRVWE 917
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/207 (26%), Positives = 93/207 (44%), Gaps = 12/207 (5%)
Query: 48 PTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVE 107
P A +S C LS ++ VAF G G IK+ +L +++ + GHK ++
Sbjct: 967 PEAQVSCCCLSPHLEYVAF---------GDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQ 1017
Query: 108 FHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVK 167
F G+ S D+ +++W+ + + + H + R D R ++S FD VK
Sbjct: 1018 FTADGKTLISSSEDSVIQVWNWQTGDYVFL-QAHQETVKDFRLLQDSR-LLSWSFDGTVK 1075
Query: 168 VWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVT 227
VW++ G++ DF H+G + S ++ SAD+T K W + + +
Sbjct: 1076 VWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNG 1135
Query: 228 GVHAITFHPDGRTLFSGFDDNLKVYSW 254
V F DG L +G DDN ++ W
Sbjct: 1136 CVRCSAFSLDGILLATG-DDNGEIRIW 1161
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 81/188 (43%), Gaps = 13/188 (6%)
Query: 73 VLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKK 132
+L+ + G +K+W++ ++ R T H+ + F+S D KIW
Sbjct: 1065 LLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLL 1124
Query: 133 GCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDF---------KFH 183
+H KGH + F+ DG + +G + +++W+++ G+LLH H
Sbjct: 1125 SPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATH 1184
Query: 184 EGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFS 243
G + + F P L SA +K+W++ T + + T + I PD RT +
Sbjct: 1185 GGWVTDVCFSPDSKTLV--SAGGYLKWWNVATGDSSQTFYTNGTNLKKIHVSPDFRTYVT 1242
Query: 244 GFDDNLKV 251
DNL +
Sbjct: 1243 V--DNLGI 1248
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 75/195 (38%), Gaps = 8/195 (4%)
Query: 56 GLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTG-----HKSNCTAVEFHP 110
GL P S + A++ TG + L + K ++ L+ H F
Sbjct: 574 GLCEPETSEVYRQAKLQAKQEGDTGRLYL-EWINKKTIKNLSRLVVRPHTDAVYHACFSQ 632
Query: 111 FGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWD 170
G+ AS D L+++ + K H + F+ D ++ + D VK+WD
Sbjct: 633 DGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWD 692
Query: 171 LTAGKLLHDFKFHEGHIRSIDF--HPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTG 228
GKL+H + H + F LLATGS D +K WDL E +
Sbjct: 693 SATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNS 752
Query: 229 VHAITFHPDGRTLFS 243
V+ F PD L S
Sbjct: 753 VNHCRFSPDDELLAS 767
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 85.1 bits (209), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/219 (26%), Positives = 113/219 (51%), Gaps = 15/219 (6%)
Query: 37 DQKVNLWAIGKPTALMSLCGLSSP---VDSVAFDSAEVLVLAGASTGVIKLWDLEESKMV 93
D V LW+ ++ L + P + SVA+ + G S+ ++LWD+++ K +
Sbjct: 135 DNSVYLWS-ASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRL 193
Query: 94 RTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIR-KKGCIHTYKGHTRGINTIRFTP 152
R +T H + ++ ++ + +SG ++ D+R + + T GH++ + +R+ P
Sbjct: 194 RNMTSHSARVGSLSWNSY--ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP 251
Query: 153 DGRWVVSGGFDNVVKVWDLTAGKL----LHDFKFHEGHIRSIDFHPLEF-LLAT--GSAD 205
DGR + SGG DN+V VW G+ L F H+G ++++ + P + +LAT G++D
Sbjct: 252 DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSD 311
Query: 206 RTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSG 244
R ++ W++ + + + + V +I + P + L SG
Sbjct: 312 RHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKELISG 349
Score = 52.8 bits (125), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 63/149 (42%), Gaps = 8/149 (5%)
Query: 29 RFLITGGDDQKVNLW----AIGKPTALMSLCGLSSPVDSVAFDSAEVLVLA---GASTGV 81
R L +GG+D VN+W G L + V +VA+ + VLA G S
Sbjct: 254 RHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRH 313
Query: 82 IKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFAS-GCMDTNLKIWDIRKKGCIHTYKG 140
I++W++ + + H C+ + + E + G L IW + KG
Sbjct: 314 IRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKG 373
Query: 141 HTRGINTIRFTPDGRWVVSGGFDNVVKVW 169
HT + ++ +PDG V S D +++W
Sbjct: 374 HTSRVLSLTMSPDGATVASAAADETLRLW 402
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/252 (21%), Positives = 102/252 (40%), Gaps = 57/252 (22%)
Query: 26 KACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLW 85
K +L G +V LW + + L ++ S+ V S++++S ++ +G+ +G I
Sbjct: 168 KEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNS--YILSSGSRSGHIHHH 225
Query: 86 DLEESKM-VRTLTGHKSNCTAVEFHPFGEFFASG-------------------------- 118
D+ ++ V TL+GH + + P G ASG
Sbjct: 226 DVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQ 285
Query: 119 ----------C-------------MDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGR 155
C D +++IW++ C+ H++ + +I ++P +
Sbjct: 286 HQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQ-VCSILWSPHYK 344
Query: 156 WVVSG-GF-DNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDL 213
++SG GF N + +W + + K H + S+ P +A+ +AD T++ W
Sbjct: 345 ELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW-- 402
Query: 214 ETFELIGSTRPE 225
FEL + R E
Sbjct: 403 RCFELDPARRRE 414
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 65/137 (47%), Gaps = 13/137 (9%)
Query: 120 MDTNLKIWDIRKKGCIHTYKGHTRG--INTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLL 177
+D ++ +W + + G I+++ + +G ++ G V++WD+ K L
Sbjct: 134 LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRL 193
Query: 178 HDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFE-----LIGSTRPEVTGVHAI 232
+ H + S+ ++ ++L++GS + D+ E L G ++ EV G +
Sbjct: 194 RNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQ-EVCG---L 247
Query: 233 TFHPDGRTLFSGFDDNL 249
+ PDGR L SG +DNL
Sbjct: 248 RWAPDGRHLASGGNDNL 264
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 85.1 bits (209), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/219 (26%), Positives = 113/219 (51%), Gaps = 15/219 (6%)
Query: 37 DQKVNLWAIGKPTALMSLCGLSSP---VDSVAFDSAEVLVLAGASTGVIKLWDLEESKMV 93
D V LW+ ++ L + P + SVA+ + G S+ ++LWD+++ K +
Sbjct: 124 DNSVYLWS-ASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRL 182
Query: 94 RTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIR-KKGCIHTYKGHTRGINTIRFTP 152
R +T H + ++ ++ + +SG ++ D+R + + T GH++ + +R+ P
Sbjct: 183 RNMTSHSARVGSLSWNSY--ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP 240
Query: 153 DGRWVVSGGFDNVVKVWDLTAGKL----LHDFKFHEGHIRSIDFHPLEF-LLAT--GSAD 205
DGR + SGG DN+V VW G+ L F H+G ++++ + P + +LAT G++D
Sbjct: 241 DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSD 300
Query: 206 RTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSG 244
R ++ W++ + + + + V +I + P + L SG
Sbjct: 301 RHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKELISG 338
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 63/149 (42%), Gaps = 8/149 (5%)
Query: 29 RFLITGGDDQKVNLW----AIGKPTALMSLCGLSSPVDSVAFDSAEVLVLA---GASTGV 81
R L +GG+D VN+W G L + V +VA+ + VLA G S
Sbjct: 243 RHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRH 302
Query: 82 IKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFAS-GCMDTNLKIWDIRKKGCIHTYKG 140
I++W++ + + H C+ + + E + G L IW + KG
Sbjct: 303 IRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKG 362
Query: 141 HTRGINTIRFTPDGRWVVSGGFDNVVKVW 169
HT + ++ +PDG V S D +++W
Sbjct: 363 HTSRVLSLTMSPDGATVASAAADETLRLW 391
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 53/252 (21%), Positives = 102/252 (40%), Gaps = 57/252 (22%)
Query: 26 KACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLW 85
K +L G +V LW + + L ++ S+ V S++++S ++ +G+ +G I
Sbjct: 157 KEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNS--YILSSGSRSGHIHHH 214
Query: 86 DLEESKM-VRTLTGHKSNCTAVEFHPFGEFFASG-------------------------- 118
D+ ++ V TL+GH + + P G ASG
Sbjct: 215 DVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQ 274
Query: 119 ----------C-------------MDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGR 155
C D +++IW++ C+ H++ + +I ++P +
Sbjct: 275 HQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQ-VCSILWSPHYK 333
Query: 156 WVVSG-GF-DNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDL 213
++SG GF N + +W + + K H + S+ P +A+ +AD T++ W
Sbjct: 334 ELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW-- 391
Query: 214 ETFELIGSTRPE 225
FEL + R E
Sbjct: 392 RCFELDPARRRE 403
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 65/137 (47%), Gaps = 13/137 (9%)
Query: 120 MDTNLKIWDIRKKGCIHTYKGHTRG--INTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLL 177
+D ++ +W + + G I+++ + +G ++ G V++WD+ K L
Sbjct: 123 LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRL 182
Query: 178 HDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFE-----LIGSTRPEVTGVHAI 232
+ H + S+ ++ ++L++GS + D+ E L G ++ EV G +
Sbjct: 183 RNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQ-EVCG---L 236
Query: 233 TFHPDGRTLFSGFDDNL 249
+ PDGR L SG +DNL
Sbjct: 237 RWAPDGRHLASGGNDNL 253
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 84.7 bits (208), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 55/203 (27%), Positives = 98/203 (48%), Gaps = 15/203 (7%)
Query: 61 VDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHP--FGEFFASG 118
+ + +F ++++ +L + G LWD+E +++++ GH ++ ++ P G F SG
Sbjct: 157 LSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSG 216
Query: 119 CMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLH 178
D +WD+R C+ ++ H +N++R+ P G SG D +++DL A + +
Sbjct: 217 GCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVA 276
Query: 179 DFKFHEGHI---RSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTG----VHA 231
+ E I S+DF LL G D T+ WD+ L GS + G V
Sbjct: 277 IYS-KESIIFGASSVDFSLSGRLLFAGYNDYTINVWDV----LKGSRVSILFGHENRVST 331
Query: 232 ITFHPDGRTLFSG-FDDNLKVYS 253
+ PDG SG +D L+V++
Sbjct: 332 LRVSPDGTAFCSGSWDHTLRVWA 354
Score = 72.4 bits (176), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/195 (24%), Positives = 89/195 (45%), Gaps = 10/195 (5%)
Query: 27 ACRF------LITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEV--LVLAGAS 78
AC F ++T D LW + L S G + V + +E ++G
Sbjct: 159 ACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGC 218
Query: 79 TGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIR--KKGCIH 136
+WD+ + V+ H+S+ +V ++P G+ FASG D +++D+R ++ I+
Sbjct: 219 DKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIY 278
Query: 137 TYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLE 196
+ + G +++ F+ GR + +G D + VWD+ G + HE + ++ P
Sbjct: 279 SKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDG 338
Query: 197 FLLATGSADRTVKFW 211
+GS D T++ W
Sbjct: 339 TAFCSGSWDHTLRVW 353
Score = 67.0 bits (162), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 78/168 (46%), Gaps = 3/168 (1%)
Query: 5 GYKLQEFVAHSANVNCISIG-KKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDS 63
G LQ F H A+V C+ + + ++GG D+K +W + + + S V+S
Sbjct: 186 GQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNS 245
Query: 64 VAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHK--SNCTAVEFHPFGEFFASGCMD 121
V + + +G+ +L+DL + V + ++V+F G +G D
Sbjct: 246 VRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYND 305
Query: 122 TNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVW 169
+ +WD+ K + GH ++T+R +PDG SG +D+ ++VW
Sbjct: 306 YTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 353
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/270 (20%), Positives = 94/270 (34%), Gaps = 80/270 (29%)
Query: 91 KMVRTLTGHKSN---------------------------------------CT---AVEF 108
K RTL GH + CT A +
Sbjct: 55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAY 114
Query: 109 HPFGEFFASGCMDTNLKIWDI----------RKKGCIHTYKGHTRGINTIRFTPDGRWVV 158
P G A G +D ++ + +KK + HT ++ FT ++
Sbjct: 115 APSGCAIACGGLDNKCSVYPLTFDKNENMAAKKK----SVAMHTNYLSACSFTNSDMQIL 170
Query: 159 SGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEF--LLATGSADRTVKFWDLETF 216
+ D +WD+ +G+LL F H + +D P E +G D+ WD+ +
Sbjct: 171 TASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSG 230
Query: 217 ELIGSTRPEVTGVHAITFHPDGRTLFSGFDD------------NLKVYSWEPVIC-HDSV 263
+ + + + V+++ ++P G SG DD + +YS E +I SV
Sbjct: 231 QCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSV 290
Query: 264 DMGWSTLGDLCINDGKLLGCSFYRNSVGIW 293
D S G+LL + ++ +W
Sbjct: 291 DFSLS---------GRLLFAGYNDYTINVW 311
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 84.3 bits (207), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 68/265 (25%), Positives = 112/265 (42%), Gaps = 21/265 (7%)
Query: 11 FVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAE 70
H+ +V C+ + R +ITG D V +W + L +L V + F++
Sbjct: 169 LTGHTGSVLCLQYDE---RVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNG- 224
Query: 71 VLVLAGASTGVIKLWDLE---ESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIW 127
+++ + I +WD+ + + R L GH++ V+F ++ S D +K+W
Sbjct: 225 -MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--KYIVSASGDRTIKVW 281
Query: 128 DIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHI 187
+ + T GH RGI +++ R VVSG DN +++WD+ G L + HE +
Sbjct: 282 NTSTCEFVRTLNGHKRGIACLQYRD--RLVVSGSSDNTIRLWDIECGACLRVLEGHEELV 339
Query: 188 RSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGFDD 247
R I F + +G+ D +K WDL + P T GR FD+
Sbjct: 340 RCIRFDNKR--IVSGAYDGKIKVWDL--VAALDPRAPAGTLCLRTLVEHSGRVFRLQFDE 395
Query: 248 NLKVYSWEPVICHDSVDMGWSTLGD 272
V S HD + W L D
Sbjct: 396 FQIVSS-----SHDDTILIWDFLND 415
Score = 60.5 bits (145), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 80/179 (44%), Gaps = 11/179 (6%)
Query: 73 VLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKK 132
+++G IK+WD + R LTGH + +++ +G D+ +++WD+
Sbjct: 146 IVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDE--RVIITGSSDSTVRVWDVNTG 203
Query: 133 GCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDL---TAGKLLHDFKFHEGHIRS 189
++T H + +RF +G +V+ D + VWD+ T L H +
Sbjct: 204 EMLNTLIHHCEAVLHLRFN-NGM-MVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNV 261
Query: 190 IDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGFDDN 248
+DF + + + S DRT+K W+ T E + + G+ + + R + SG DN
Sbjct: 262 VDFD--DKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRD--RLVVSGSSDN 316
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 59/118 (50%), Gaps = 5/118 (4%)
Query: 135 IHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHP 194
IH ++G+ +++ D + +VSG DN +K+WD + H G + + +
Sbjct: 126 IHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYD- 182
Query: 195 LEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGFDDNLKVY 252
E ++ TGS+D TV+ WD+ T E++ + V + F+ +G + D ++ V+
Sbjct: 183 -ERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFN-NGMMVTCSKDRSIAVW 238
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 81.3 bits (199), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 57/219 (26%), Positives = 113/219 (51%), Gaps = 15/219 (6%)
Query: 37 DQKVNLWAIGKPTALMSLCGLSSP---VDSVAFDSAEVLVLAGASTGVIKLWDLEESKMV 93
D V LW+ ++ L + P + SVA+ + G S+ ++LWD+++ K +
Sbjct: 44 DNSVYLWS-ASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRL 102
Query: 94 RTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIR-KKGCIHTYKGHTRGINTIRFTP 152
R +T H + ++ ++ + +SG ++ D+R + + T GH++ + +R+ P
Sbjct: 103 RNMTSHSARVGSLSWNSY--ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP 160
Query: 153 DGRWVVSGGFDNVVKVWDLTAGKL----LHDFKFHEGHIRSIDFHPLEF-LLAT--GSAD 205
DGR + SGG DN+V VW G+ L F H+G ++++ + P + +LAT G++D
Sbjct: 161 DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSD 220
Query: 206 RTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSG 244
R ++ W++ + + + + V +I + P + L SG
Sbjct: 221 RHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKELISG 258
Score = 50.1 bits (118), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 63/149 (42%), Gaps = 8/149 (5%)
Query: 29 RFLITGGDDQKVNLW----AIGKPTALMSLCGLSSPVDSVAFDSAEVLVLA---GASTGV 81
R L +GG+D VN+W G L + V +VA+ + VLA G S
Sbjct: 163 RHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRH 222
Query: 82 IKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFAS-GCMDTNLKIWDIRKKGCIHTYKG 140
I++W++ + + H C+ + + E + G L IW + KG
Sbjct: 223 IRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKG 282
Query: 141 HTRGINTIRFTPDGRWVVSGGFDNVVKVW 169
HT + ++ +PDG V S D +++W
Sbjct: 283 HTSRVLSLTMSPDGATVASAAADETLRLW 311
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 63/131 (48%), Gaps = 8/131 (6%)
Query: 93 VRTLTGHKSNCTAVEFHPFGEFF---ASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIR 149
++T T H+ AV + P+ G D +++IW++ C+ H++ + +I
Sbjct: 189 LQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQ-VCSIL 247
Query: 150 FTPDGRWVVSG-GF-DNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRT 207
++P + ++SG GF N + +W + + K H + S+ P +A+ +AD T
Sbjct: 248 WSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADET 307
Query: 208 VKFWDLETFEL 218
++ W FEL
Sbjct: 308 LRLW--RCFEL 316
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 56/110 (50%), Gaps = 11/110 (10%)
Query: 145 INTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSA 204
I+++ + +G ++ G V++WD+ K L + H + S+ ++ ++L++GS
Sbjct: 70 ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN--SYILSSGSR 127
Query: 205 DRTVKFWDLETFE-----LIGSTRPEVTGVHAITFHPDGRTLFSGFDDNL 249
+ D+ E L G ++ EV G + + PDGR L SG +DNL
Sbjct: 128 SGHIHHHDVRVAEHHVATLSGHSQ-EVCG---LRWAPDGRHLASGGNDNL 173
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 80.5 bits (197), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 60/216 (27%), Positives = 100/216 (46%), Gaps = 8/216 (3%)
Query: 53 SLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFG 112
+L G S V V S L+G+ G ++LWDL R GH + +V F
Sbjct: 58 ALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDN 117
Query: 113 EFFASGCMDTNLKIWDIRKKGCIHTYK--GHTRGINTIRFTPDGR--WVVSGGFDNVVKV 168
SG D +K+W+ C +T + H+ ++ +RF+P+ +VS G+D +VKV
Sbjct: 118 RQIVSGSRDKTIKLWNTLGV-CKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKV 176
Query: 169 WDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDL-ETFELIGSTRPEVT 227
W+L KL + H G++ ++ P L A+G D WDL E L ++
Sbjct: 177 WNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDI- 235
Query: 228 GVHAITFHPDGRTLFSGFDDNLKVYSWEPVICHDSV 263
++A+ F P+ L + ++K++ E I D +
Sbjct: 236 -INALCFSPNRYWLCAATGPSIKIWDLEGKIIVDEL 270
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 81/184 (44%), Gaps = 8/184 (4%)
Query: 72 LVLAGASTGVIKLWDLEESKM-----VRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKI 126
++L+ + I +W L + R L GH + V G+F SG D L++
Sbjct: 30 MILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRL 89
Query: 127 WDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWD-LTAGKLLHDFKFHEG 185
WD+ + GHT+ + ++ F+ D R +VSG D +K+W+ L K + H
Sbjct: 90 WDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSE 149
Query: 186 HIRSIDFHPLEF--LLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFS 243
+ + F P ++ + D+ VK W+L +L + ++ +T PDG S
Sbjct: 150 WVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCAS 209
Query: 244 GFDD 247
G D
Sbjct: 210 GGKD 213
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 80/179 (44%), Gaps = 13/179 (7%)
Query: 6 YKLQEFVAHSANVNCISIGKKACR-FLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSV 64
Y +Q+ +HS V+C+ + +++ G D+ V +W + + G + +++V
Sbjct: 140 YTVQD-ESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTV 198
Query: 65 AFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNL 124
L +G G LWDL E K + TL G A+ F P ++ ++
Sbjct: 199 TVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDI-INALCFSP-NRYWLCAATGPSI 256
Query: 125 KIWDIRKKGCIHTYKGHTRGINT---------IRFTPDGRWVVSGGFDNVVKVWDLTAG 174
KIWD+ K + K ++ + ++ DG+ + +G DN+V+VW +T G
Sbjct: 257 KIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIG 315
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 80.5 bits (197), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 93/212 (43%), Gaps = 16/212 (7%)
Query: 9 QEFVAHSANVNCISIGKKACRFL-----ITGGDDQKVNLWAIGKPTALMSLCGLSSPVDS 63
+E H+ ++C CRFL +T D LW I + G + V S
Sbjct: 137 RELAGHTGYLSC-------CRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMS 189
Query: 64 VAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTN 123
++ L ++GA KLWD+ E +T TGH+S+ A+ F P G FA+G D
Sbjct: 190 LSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDAT 249
Query: 124 LKIWDIRKKGCIHTYKGHTR---GINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDF 180
+++D+R + TY H GI ++ F+ GR +++G D VWD
Sbjct: 250 CRLFDLRADQELMTYS-HDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVL 308
Query: 181 KFHEGHIRSIDFHPLEFLLATGSADRTVKFWD 212
H+ + + +ATGS D +K W+
Sbjct: 309 AGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 72.4 bits (176), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 85/191 (44%), Gaps = 7/191 (3%)
Query: 66 FDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLK 125
D +++ +G +T LWD+E + T TGH + ++ P F SG D + K
Sbjct: 152 LDDNQIVTSSGDTT--CALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAK 209
Query: 126 IWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEG 185
+WD+R+ C T+ GH IN I F P+G +G D +++DL A + L + H+
Sbjct: 210 LWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYS-HDN 268
Query: 186 ---HIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLF 242
I S+ F LL G D WD + G V + DG +
Sbjct: 269 IICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVA 328
Query: 243 SG-FDDNLKVY 252
+G +D LK++
Sbjct: 329 TGSWDSFLKIW 339
Score = 70.5 bits (171), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 91/208 (43%), Gaps = 25/208 (12%)
Query: 72 LVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIR- 130
L+++ + G + +WD + V + S + P G + A G +D I++++
Sbjct: 69 LLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKT 128
Query: 131 KKGCIHTYK---GHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHI 187
++G + + GHT ++ RF D + V S G D +WD+ G+ F H G +
Sbjct: 129 REGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG-DTTCALWDIETGQQTTTFTGHTGDV 187
Query: 188 RSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTG----VHAITFHPDGRTLFS 243
S+ P L +G+ D + K WD+ G R TG ++AI F P+G +
Sbjct: 188 MSLSLAPDTRLFVSGACDASAKLWDVRE----GMCRQTFTGHESDINAICFFPNGNAFAT 243
Query: 244 GFDD------------NLKVYSWEPVIC 259
G DD L YS + +IC
Sbjct: 244 GSDDATCRLFDLRADQELMTYSHDNIIC 271
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 80.5 bits (197), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 93/212 (43%), Gaps = 16/212 (7%)
Query: 9 QEFVAHSANVNCISIGKKACRFL-----ITGGDDQKVNLWAIGKPTALMSLCGLSSPVDS 63
+E H+ ++C CRFL +T D LW I + G + V S
Sbjct: 137 RELAGHTGYLSC-------CRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMS 189
Query: 64 VAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTN 123
++ L ++GA KLWD+ E +T TGH+S+ A+ F P G FA+G D
Sbjct: 190 LSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDAT 249
Query: 124 LKIWDIRKKGCIHTYKGHTR---GINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDF 180
+++D+R + TY H GI ++ F+ GR +++G D VWD
Sbjct: 250 CRLFDLRADQELMTYS-HDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVL 308
Query: 181 KFHEGHIRSIDFHPLEFLLATGSADRTVKFWD 212
H+ + + +ATGS D +K W+
Sbjct: 309 AGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 72.4 bits (176), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 85/191 (44%), Gaps = 7/191 (3%)
Query: 66 FDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLK 125
D +++ +G +T LWD+E + T TGH + ++ P F SG D + K
Sbjct: 152 LDDNQIVTSSGDTT--CALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAK 209
Query: 126 IWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEG 185
+WD+R+ C T+ GH IN I F P+G +G D +++DL A + L + H+
Sbjct: 210 LWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYS-HDN 268
Query: 186 ---HIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLF 242
I S+ F LL G D WD + G V + DG +
Sbjct: 269 IICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVA 328
Query: 243 SG-FDDNLKVY 252
+G +D LK++
Sbjct: 329 TGSWDSFLKIW 339
Score = 70.5 bits (171), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 91/208 (43%), Gaps = 25/208 (12%)
Query: 72 LVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIR- 130
L+++ + G + +WD + V + S + P G + A G +D I++++
Sbjct: 69 LLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKT 128
Query: 131 KKGCIHTYK---GHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHI 187
++G + + GHT ++ RF D + V S G D +WD+ G+ F H G +
Sbjct: 129 REGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG-DTTCALWDIETGQQTTTFTGHTGDV 187
Query: 188 RSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTG----VHAITFHPDGRTLFS 243
S+ P L +G+ D + K WD+ G R TG ++AI F P+G +
Sbjct: 188 MSLSLAPDTRLFVSGACDASAKLWDVRE----GMCRQTFTGHESDINAICFFPNGNAFAT 243
Query: 244 GFDD------------NLKVYSWEPVIC 259
G DD L YS + +IC
Sbjct: 244 GSDDATCRLFDLRADQELMTYSHDNIIC 271
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 80.5 bits (197), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 93/212 (43%), Gaps = 16/212 (7%)
Query: 9 QEFVAHSANVNCISIGKKACRFL-----ITGGDDQKVNLWAIGKPTALMSLCGLSSPVDS 63
+E H+ ++C CRFL +T D LW I + G + V S
Sbjct: 137 RELAGHTGYLSC-------CRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMS 189
Query: 64 VAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTN 123
++ L ++GA KLWD+ E +T TGH+S+ A+ F P G FA+G D
Sbjct: 190 LSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDAT 249
Query: 124 LKIWDIRKKGCIHTYKGHTR---GINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDF 180
+++D+R + TY H GI ++ F+ GR +++G D VWD
Sbjct: 250 CRLFDLRADQELMTYS-HDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVL 308
Query: 181 KFHEGHIRSIDFHPLEFLLATGSADRTVKFWD 212
H+ + + +ATGS D +K W+
Sbjct: 309 AGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 85/191 (44%), Gaps = 7/191 (3%)
Query: 66 FDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLK 125
D +++ +G +T LWD+E + T TGH + ++ P F SG D + K
Sbjct: 152 LDDNQIVTSSGDTT--CALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAK 209
Query: 126 IWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEG 185
+WD+R+ C T+ GH IN I F P+G +G D +++DL A + L + H+
Sbjct: 210 LWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYS-HDN 268
Query: 186 ---HIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLF 242
I S+ F LL G D WD + G V + DG +
Sbjct: 269 IICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVA 328
Query: 243 SG-FDDNLKVY 252
+G +D LK++
Sbjct: 329 TGSWDSFLKIW 339
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/208 (26%), Positives = 91/208 (43%), Gaps = 25/208 (12%)
Query: 72 LVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIR- 130
L+L+ + G + +WD + V + S + P G + A G +D I++++
Sbjct: 69 LLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKT 128
Query: 131 KKGCIHTYK---GHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHI 187
++G + + GHT ++ RF D + V S G D +WD+ G+ F H G +
Sbjct: 129 REGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG-DTTCALWDIETGQQTTTFTGHTGDV 187
Query: 188 RSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTG----VHAITFHPDGRTLFS 243
S+ P L +G+ D + K WD+ G R TG ++AI F P+G +
Sbjct: 188 MSLSLAPDTRLFVSGACDASAKLWDVRE----GMCRQTFTGHESDINAICFFPNGNAFAT 243
Query: 244 GFDD------------NLKVYSWEPVIC 259
G DD L YS + +IC
Sbjct: 244 GSDDATCRLFDLRADQELMTYSHDNIIC 271
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 80.5 bits (197), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 93/212 (43%), Gaps = 16/212 (7%)
Query: 9 QEFVAHSANVNCISIGKKACRFL-----ITGGDDQKVNLWAIGKPTALMSLCGLSSPVDS 63
+E H+ ++C CRFL +T D LW I + G + V S
Sbjct: 137 RELAGHTGYLSC-------CRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMS 189
Query: 64 VAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTN 123
++ L ++GA KLWD+ E +T TGH+S+ A+ F P G FA+G D
Sbjct: 190 LSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDAT 249
Query: 124 LKIWDIRKKGCIHTYKGHTR---GINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDF 180
+++D+R + TY H GI ++ F+ GR +++G D VWD
Sbjct: 250 CRLFDLRADQELMTYS-HDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVL 308
Query: 181 KFHEGHIRSIDFHPLEFLLATGSADRTVKFWD 212
H+ + + +ATGS D +K W+
Sbjct: 309 AGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 72.4 bits (176), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 85/191 (44%), Gaps = 7/191 (3%)
Query: 66 FDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLK 125
D +++ +G +T LWD+E + T TGH + ++ P F SG D + K
Sbjct: 152 LDDNQIVTSSGDTT--CALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAK 209
Query: 126 IWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEG 185
+WD+R+ C T+ GH IN I F P+G +G D +++DL A + L + H+
Sbjct: 210 LWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYS-HDN 268
Query: 186 ---HIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLF 242
I S+ F LL G D WD + G V + DG +
Sbjct: 269 IICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVA 328
Query: 243 SG-FDDNLKVY 252
+G +D LK++
Sbjct: 329 TGSWDSFLKIW 339
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/208 (26%), Positives = 91/208 (43%), Gaps = 25/208 (12%)
Query: 72 LVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIR- 130
L+L+ + G + +WD + V + S + P G + A G +D I++++
Sbjct: 69 LLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKT 128
Query: 131 KKGCIHTYK---GHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHI 187
++G + + GHT ++ RF D + V S G D +WD+ G+ F H G +
Sbjct: 129 REGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG-DTTCALWDIETGQQTTTFTGHTGDV 187
Query: 188 RSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTG----VHAITFHPDGRTLFS 243
S+ P L +G+ D + K WD+ G R TG ++AI F P+G +
Sbjct: 188 MSLSLAPDTRLFVSGACDASAKLWDVRE----GMCRQTFTGHESDINAICFFPNGNAFAT 243
Query: 244 GFDD------------NLKVYSWEPVIC 259
G DD L YS + +IC
Sbjct: 244 GSDDATCRLFDLRADQELMTYSHDNIIC 271
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 80.1 bits (196), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 60/216 (27%), Positives = 100/216 (46%), Gaps = 8/216 (3%)
Query: 53 SLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFG 112
+L G S V V S L+G+ G ++LWDL R GH + +V F
Sbjct: 81 ALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDN 140
Query: 113 EFFASGCMDTNLKIWDIRKKGCIHTYK--GHTRGINTIRFTPDGR--WVVSGGFDNVVKV 168
SG D +K+W+ C +T + H+ ++ +RF+P+ +VS G+D +VKV
Sbjct: 141 RQIVSGSRDKTIKLWNTLGV-CKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKV 199
Query: 169 WDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDL-ETFELIGSTRPEVT 227
W+L KL + H G++ ++ P L A+G D WDL E L ++
Sbjct: 200 WNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDI- 258
Query: 228 GVHAITFHPDGRTLFSGFDDNLKVYSWEPVICHDSV 263
++A+ F P+ L + ++K++ E I D +
Sbjct: 259 -INALCFSPNRYWLCAATGPSIKIWDLEGKIIVDEL 293
Score = 64.7 bits (156), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 81/184 (44%), Gaps = 8/184 (4%)
Query: 72 LVLAGASTGVIKLWDLEESKM-----VRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKI 126
++L+ + I +W L + R L GH + V G+F SG D L++
Sbjct: 53 MILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRL 112
Query: 127 WDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWD-LTAGKLLHDFKFHEG 185
WD+ + GHT+ + ++ F+ D R +VSG D +K+W+ L K + H
Sbjct: 113 WDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSE 172
Query: 186 HIRSIDFHPLEF--LLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFS 243
+ + F P ++ + D+ VK W+L +L + ++ +T PDG S
Sbjct: 173 WVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCAS 232
Query: 244 GFDD 247
G D
Sbjct: 233 GGKD 236
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 80/179 (44%), Gaps = 13/179 (7%)
Query: 6 YKLQEFVAHSANVNCISIGKKACR-FLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSV 64
Y +Q+ +HS V+C+ + +++ G D+ V +W + + G + +++V
Sbjct: 163 YTVQD-ESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTV 221
Query: 65 AFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNL 124
L +G G LWDL E K + TL G A+ F P ++ ++
Sbjct: 222 TVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDI-INALCFSP-NRYWLCAATGPSI 279
Query: 125 KIWDIRKKGCIHTYKGHTRGINT---------IRFTPDGRWVVSGGFDNVVKVWDLTAG 174
KIWD+ K + K ++ + ++ DG+ + +G DN+V+VW +T G
Sbjct: 280 KIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIG 338
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 80.1 bits (196), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 93/212 (43%), Gaps = 16/212 (7%)
Query: 9 QEFVAHSANVNCISIGKKACRFL-----ITGGDDQKVNLWAIGKPTALMSLCGLSSPVDS 63
+E H+ ++C CRFL +T D LW I + G + V S
Sbjct: 148 RELAGHTGYLSC-------CRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMS 200
Query: 64 VAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTN 123
++ L ++GA KLWD+ E +T TGH+S+ A+ F P G FA+G D
Sbjct: 201 LSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDAT 260
Query: 124 LKIWDIRKKGCIHTYKGHTR---GINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDF 180
+++D+R + TY H GI ++ F+ GR +++G D VWD
Sbjct: 261 CRLFDLRADQELMTYS-HDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVL 319
Query: 181 KFHEGHIRSIDFHPLEFLLATGSADRTVKFWD 212
H+ + + +ATGS D +K W+
Sbjct: 320 AGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 351
Score = 72.4 bits (176), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 85/191 (44%), Gaps = 7/191 (3%)
Query: 66 FDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLK 125
D +++ +G +T LWD+E + T TGH + ++ P F SG D + K
Sbjct: 163 LDDNQIVTSSGDTT--CALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAK 220
Query: 126 IWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEG 185
+WD+R+ C T+ GH IN I F P+G +G D +++DL A + L + H+
Sbjct: 221 LWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYS-HDN 279
Query: 186 ---HIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLF 242
I S+ F LL G D WD + G V + DG +
Sbjct: 280 IICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVA 339
Query: 243 SG-FDDNLKVY 252
+G +D LK++
Sbjct: 340 TGSWDSFLKIW 350
Score = 70.5 bits (171), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 91/208 (43%), Gaps = 25/208 (12%)
Query: 72 LVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIR- 130
L+++ + G + +WD + V + S + P G + A G +D I++++
Sbjct: 80 LLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKT 139
Query: 131 KKGCIHTYK---GHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHI 187
++G + + GHT ++ RF D + V S G D +WD+ G+ F H G +
Sbjct: 140 REGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG-DTTCALWDIETGQQTTTFTGHTGDV 198
Query: 188 RSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTG----VHAITFHPDGRTLFS 243
S+ P L +G+ D + K WD+ G R TG ++AI F P+G +
Sbjct: 199 MSLSLAPDTRLFVSGACDASAKLWDVRE----GMCRQTFTGHESDINAICFFPNGNAFAT 254
Query: 244 GFDD------------NLKVYSWEPVIC 259
G DD L YS + +IC
Sbjct: 255 GSDDATCRLFDLRADQELMTYSHDNIIC 282
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 77.0 bits (188), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 63/289 (21%), Positives = 107/289 (37%), Gaps = 59/289 (20%)
Query: 35 GDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVR 94
G D+ + ++ L+ + V AF + + + + +K+W+ ++V
Sbjct: 640 GADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRFIATCSVDKKVKIWNSMTGELVH 699
Query: 95 TLTGH--KSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTP 152
T H + NC A+G D LK+WD+ +K C +T GHT +N RF+P
Sbjct: 700 TYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLNQKECRNTMFGHTNSVNHCRFSP 759
Query: 153 DGRWVVSGGFDNVVKVWDLTAGK------------------------------------- 175
D + + S D +K+WD T+
Sbjct: 760 DDKLLASCSADGTLKLWDATSANERKSINVKQFFLNLEDPQEDMEVIVKCCSWSADGARI 819
Query: 176 --------LLHDF-------KFHEGH---IRSIDFHPLEFLLATGSADRTVKFWDLETFE 217
L D + H GH I+ DF P L + V+ W+ ++
Sbjct: 820 MVAAKNKIFLFDIHTSGLLGEIHTGHHSTIQYCDFSPQNHLAVVALSQYCVELWNTDSRS 879
Query: 218 LIGSTRPEVTGVHAITFHPDGRTLFSGFDDNLKVYSWE-PVICHDSVDM 265
+ R ++ VH + F PDG + + DD + WE +C +S M
Sbjct: 880 KVADCRGHLSWVHGVMFSPDGSSFLTSSDDQ-TIRLWETKKVCKNSAVM 927
Score = 75.5 bits (184), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 76/304 (25%), Positives = 120/304 (39%), Gaps = 61/304 (20%)
Query: 31 LITGGDDQKVNLW---AIGKPTALMSLCGLSSPVDSVAFDSAEVLVLA------------ 75
+T DDQ + LW + K +A+M L VD V F EV+VLA
Sbjct: 903 FLTSSDDQTIRLWETKKVCKNSAVM----LKQEVD-VVFQENEVMVLAVDHIRRLQLING 957
Query: 76 ---------------------------GASTGVIKLWDLEESKMVRTLTGHKSNCTAVEF 108
G G I++ +L +++ ++ HK ++F
Sbjct: 958 RTGQIDYLTEAQVSCCCLSPHLQYIAFGDENGAIEILELVNNRIFQSRFQHKKTVWHIQF 1017
Query: 109 HPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKV 168
+ S D +++W+ + CI +GH + R + R ++S FD VKV
Sbjct: 1018 TADEKTLISSSDDAEIQVWNWQLDKCIFL-RGHQETVKDFRLLKNSR-LLSWSFDGTVKV 1075
Query: 169 WDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTG 228
W++ G DF H+G + S D ++ SAD+T K W + + R
Sbjct: 1076 WNIITGNKEKDFVCHQGTVLSCDISHDATKFSSTSADKTAKIWSFDLLLPLHELRGHNGC 1135
Query: 229 VHAITFHPDGRTLFSGFDDNLKVYSWEPV------ICHDSVDMGWSTLG----DLCIN-D 277
V F D L +G DDN ++ W +C + G +T G DLC + D
Sbjct: 1136 VRCSAFSVDSTLLATG-DDNGEIRIWNVSNGELLHLCAPLSEEGAATHGGWVTDLCFSPD 1194
Query: 278 GKLL 281
GK+L
Sbjct: 1195 GKML 1198
Score = 58.2 bits (139), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 66/150 (44%), Gaps = 7/150 (4%)
Query: 108 FHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVK 167
F G+ AS D L+++ + K H + F+ D R++ + D VK
Sbjct: 629 FSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRFIATCSVDKKVK 688
Query: 168 VWDLTAGKLLHDFKFHEGHIRSIDF----HPLEFLLATGSADRTVKFWDLETFELIGSTR 223
+W+ G+L+H + H + F H L LLATGS+D +K WDL E +
Sbjct: 689 IWNSMTGELVHTYDEHSEQVNCCHFTNSSHHL--LLATGSSDCFLKLWDLNQKECRNTMF 746
Query: 224 PEVTGVHAITFHPDGRTLFS-GFDDNLKVY 252
V+ F PD + L S D LK++
Sbjct: 747 GHTNSVNHCRFSPDDKLLASCSADGTLKLW 776
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/229 (21%), Positives = 92/229 (40%), Gaps = 14/229 (6%)
Query: 31 LITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEES 90
LI+ DD ++ +W + L G V L L+ + G +K+W++
Sbjct: 1024 LISSSDDAEIQVWNWQLDKCIF-LRGHQETVKDFRLLKNSRL-LSWSFDGTVKVWNIITG 1081
Query: 91 KMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRF 150
+ H+ + + F+S D KIW +H +GH + F
Sbjct: 1082 NKEKDFVCHQGTVLSCDISHDATKFSSTSADKTAKIWSFDLLLPLHELRGHNGCVRCSAF 1141
Query: 151 TPDGRWVVSGGFDNVVKVWDLTAGKLLH--------DFKFHEGHIRSIDFHPLEFLLATG 202
+ D + +G + +++W+++ G+LLH H G + + F P +L
Sbjct: 1142 SVDSTLLATGDDNGEIRIWNVSNGELLHLCAPLSEEGAATHGGWVTDLCFSPDGKMLI-- 1199
Query: 203 SADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGFDDNLKV 251
SA +K+W++ T E + T + I PD +T + DNL +
Sbjct: 1200 SAGGYIKWWNVVTGESSQTFYTNGTNLKKIHVSPDFKTYVTV--DNLGI 1246
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 44/94 (46%)
Query: 141 HTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLA 200
HT + F+ DG+ + S G D ++V+ G+ L + K HE + F + +A
Sbjct: 620 HTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRFIA 679
Query: 201 TGSADRTVKFWDLETFELIGSTRPEVTGVHAITF 234
T S D+ VK W+ T EL+ + V+ F
Sbjct: 680 TCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHF 713
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 76.6 bits (187), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 69/267 (25%), Positives = 110/267 (41%), Gaps = 50/267 (18%)
Query: 14 HSANVNCISIGKKAC--------RFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSV- 64
H+ +N ++ G+ C R + TGG V +W I P G SPV +
Sbjct: 41 HARQINTLNHGEVVCAVTISNPTRHVYTGGKG-CVKVWDISHP-------GNKSPVSQLD 92
Query: 65 ------AFDSAEVL-----VLAGASTGVIKLWDLEES--KMVRTLTGHKSNCTAVEFHPF 111
S ++L ++ G + +WDL ++ LT C A+ P
Sbjct: 93 CLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPD 152
Query: 112 GEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDL 171
+ S C D N+ +WD+ + + ++GHT G + I + DG + +GG DN V+ WDL
Sbjct: 153 SKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDL 212
Query: 172 TAGKLL--HDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGV 229
G+ L HDF I S+ + P LA G V E++ +P+ +
Sbjct: 213 REGRQLQQHDFT---SQIFSLGYCPTGEWLAVGMESSNV--------EVLHVNKPDKYQL 261
Query: 230 H-------AITFHPDGRTLFSGFDDNL 249
H ++ F G+ S DNL
Sbjct: 262 HLHESCVLSLKFAYCGKWFVSTGKDNL 288
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/225 (20%), Positives = 84/225 (37%), Gaps = 43/225 (19%)
Query: 31 LITGGDDQKVNLWAIGKPTALMS--LCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLE 88
LI GG+ +++W + PT + L + ++A + + S G I +WDL
Sbjct: 112 LIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLH 171
Query: 89 ESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKK---------------- 132
+VR GH + ++ G +G +D ++ WD+R+
Sbjct: 172 NQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLG 231
Query: 133 GC-----------------IHTYKG-------HTRGINTIRFTPDGRWVVSGGFDNVVKV 168
C +H K H + +++F G+W VS G DN++
Sbjct: 232 YCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNA 291
Query: 169 WDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDL 213
W G + K + S D + + TGS D+ +++
Sbjct: 292 WRTPYGASIFQSK-ESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/178 (21%), Positives = 69/178 (38%), Gaps = 18/178 (10%)
Query: 89 ESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKG---------CIHTYK 139
++ + TL + C +P + G +K+WDI G C++
Sbjct: 41 HARQINTLNHGEVVCAVTISNPTRHVYTGG--KGCVKVWDISHPGNKSPVSQLDCLN--- 95
Query: 140 GHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAG--KLLHDFKFHEGHIRSIDFHPLEF 197
I + + PDG ++ GG + + +WDL A ++ + ++ P
Sbjct: 96 -RDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSK 154
Query: 198 LLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGFDDNLKVYSWE 255
+ + +D + WDL L+ + G I DG L++G DN V SW+
Sbjct: 155 VCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDN-TVRSWD 211
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 73.9 bits (180), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 70/280 (25%), Positives = 126/280 (45%), Gaps = 43/280 (15%)
Query: 9 QEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDS 68
+ H+ V+ +++ ++ C F I+ D+ + LW + T G S V SVAF
Sbjct: 70 KALTGHNHFVSDLALSQENC-FAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSP 128
Query: 69 AEVLVLAGASTGVIKLWD-LEESKMVRTLTGHKSNC-----------TAVEFHPFGEFFA 116
+L+ + IKLW+ L E K + S+ +A + PF +FA
Sbjct: 129 DNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFA 188
Query: 117 SGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKL 176
S D LK+W+ + +T+K H +N + +P+G+++ +GG D + +WD+ L
Sbjct: 189 SVGWDGRLKVWNTNFQ-IRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDIL--NL 245
Query: 177 LH-DFKFHEGH-IRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHA--- 231
+ +F G I I F+P +A G+ D+ VK F L+ ++ V + A
Sbjct: 246 TYPQREFDAGSTINQIAFNPKLQWVAVGT-DQGVK-----IFNLMTQSKAPVCTIEAEPI 299
Query: 232 ---------------ITFHPDGRTLFSGFDDN-LKVYSWE 255
+ ++ G+ LF+GF D ++ +S+E
Sbjct: 300 TKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFE 339
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/208 (20%), Positives = 89/208 (42%), Gaps = 31/208 (14%)
Query: 72 LVLAGASTGVIKLWDLEESKM-------VRTLTGHKSNCTAVEFHPFGEFFASGCMDTNL 124
++++G+ + +W L E + + LTGH + + F S D L
Sbjct: 41 VLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTL 100
Query: 125 KIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKF-- 182
++WD+R + GH + ++ F+PD R ++S G + +K+W+ +L + KF
Sbjct: 101 RLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWN-----ILGECKFSS 155
Query: 183 -----HEGHIRSIDF----------HPLEFLLATGSADRTVKFWDLETFELIGSTRPEVT 227
H + + + P A+ D +K W+ F++ + + +
Sbjct: 156 AEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHES 214
Query: 228 GVHAITFHPDGRTLFSGFDDNLKVYSWE 255
V+ ++ P+G+ + +G D K+ W+
Sbjct: 215 NVNHLSISPNGKYIATGGKDK-KLLIWD 241
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 72.0 bits (175), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/210 (29%), Positives = 90/210 (42%), Gaps = 24/210 (11%)
Query: 73 VLAGASTGVIKLWDL----EESKMV---RTLTGHKSNCTAVEFHPFGE-FFASGCMDTNL 124
+L+ + I LWD+ +E +++ TGH + V +H E F S D L
Sbjct: 197 LLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKL 256
Query: 125 KIWDIRKKGCI---HTYKGHTRGINTIRFTPDGRWVVS-GGFDNVVKVWDLTAGKL-LHD 179
IWD R HT HT +N + F P ++++ G D V +WDL KL LH
Sbjct: 257 MIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHS 316
Query: 180 FKFHEGHIRSIDFHPL-EFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDG 238
F+ H+ I + + P E +LA+ DR + WDL ST G + F G
Sbjct: 317 FESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGG 376
Query: 239 RTLFSGFDDNLKVYSWEP----VICHDSVD 264
T + +SW P +IC S D
Sbjct: 377 HTA------KISDFSWNPNEPWIICSVSED 400
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 72/173 (41%), Gaps = 16/173 (9%)
Query: 96 LTGHKSNCTAVEFHP-FGEFFASGCMDTNLKIWDI-------RKKGCIHTYKGHTRGINT 147
L GH+ + ++P + S D + +WDI R + + GHT +
Sbjct: 177 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVED 236
Query: 148 IRFTPDGRWVV-SGGFDNVVKVWDL---TAGKLLHDFKFHEGHIRSIDFHPL-EFLLATG 202
+ + + S D + +WD K H H + + F+P EF+LATG
Sbjct: 237 VAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATG 296
Query: 203 SADRTVKFWDLETFEL-IGSTRPEVTGVHAITFHPDGRTLF--SGFDDNLKVY 252
SAD+TV WDL +L + S + + + P T+ SG D L V+
Sbjct: 297 SADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVW 349
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 63/176 (35%), Gaps = 59/176 (33%)
Query: 13 AHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVL 72
AH+A VNC+S + L TG D+ V L
Sbjct: 275 AHTAEVNCLSFNPYSEFILATGSADKTVAL------------------------------ 304
Query: 73 VLAGASTGVIKLWDLEESKM-VRTLTGHKSNCTAVEFHPFGE-FFASGCMDTNLKIWDIR 130
WDL K+ + + HK V++ P E AS D L +WD+
Sbjct: 305 ------------WDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLS 352
Query: 131 KKG--------------CIHTYKGHTRGINTIRFTPDGRWVV-SGGFDNVVKVWDL 171
K G + + GHT I+ + P+ W++ S DN+++VW +
Sbjct: 353 KIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQM 408
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 72.0 bits (175), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/210 (29%), Positives = 90/210 (42%), Gaps = 24/210 (11%)
Query: 73 VLAGASTGVIKLWDL----EESKMV---RTLTGHKSNCTAVEFHPFGE-FFASGCMDTNL 124
+L+ + I LWD+ +E +++ TGH + V +H E F S D L
Sbjct: 199 LLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKL 258
Query: 125 KIWDIRKKGCI---HTYKGHTRGINTIRFTPDGRWVVS-GGFDNVVKVWDLTAGKL-LHD 179
IWD R HT HT +N + F P ++++ G D V +WDL KL LH
Sbjct: 259 MIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHS 318
Query: 180 FKFHEGHIRSIDFHPL-EFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDG 238
F+ H+ I + + P E +LA+ DR + WDL ST G + F G
Sbjct: 319 FESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGG 378
Query: 239 RTLFSGFDDNLKVYSWEP----VICHDSVD 264
T + +SW P +IC S D
Sbjct: 379 HTA------KISDFSWNPNEPWIICSVSED 402
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 72/173 (41%), Gaps = 16/173 (9%)
Query: 96 LTGHKSNCTAVEFHP-FGEFFASGCMDTNLKIWDI-------RKKGCIHTYKGHTRGINT 147
L GH+ + ++P + S D + +WDI R + + GHT +
Sbjct: 179 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVED 238
Query: 148 IRFTPDGRWVV-SGGFDNVVKVWDL---TAGKLLHDFKFHEGHIRSIDFHPL-EFLLATG 202
+ + + S D + +WD K H H + + F+P EF+LATG
Sbjct: 239 VAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATG 298
Query: 203 SADRTVKFWDLETFEL-IGSTRPEVTGVHAITFHPDGRTLF--SGFDDNLKVY 252
SAD+TV WDL +L + S + + + P T+ SG D L V+
Sbjct: 299 SADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVW 351
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 63/176 (35%), Gaps = 59/176 (33%)
Query: 13 AHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVL 72
AH+A VNC+S + L TG D+ V L
Sbjct: 277 AHTAEVNCLSFNPYSEFILATGSADKTVAL------------------------------ 306
Query: 73 VLAGASTGVIKLWDLEESKM-VRTLTGHKSNCTAVEFHPFGE-FFASGCMDTNLKIWDIR 130
WDL K+ + + HK V++ P E AS D L +WD+
Sbjct: 307 ------------WDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLS 354
Query: 131 KKG--------------CIHTYKGHTRGINTIRFTPDGRWVV-SGGFDNVVKVWDL 171
K G + + GHT I+ + P+ W++ S DN+++VW +
Sbjct: 355 KIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQM 410
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 71.2 bits (173), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 51/215 (23%), Positives = 94/215 (43%), Gaps = 28/215 (13%)
Query: 30 FLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEE 89
++ITG DD+ + ++ L+ L G V ++ + +LV +G++ +++WD+++
Sbjct: 134 YVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILV-SGSTDRTVRVWDIKK 192
Query: 90 SKMVRTLTGHKSNCTAVEFHPFG--EFFASGCMDTNLKIWDIRKKGCI------HTY--- 138
GH S ++ + ++ +G D L +W + K+ + H Y
Sbjct: 193 GCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLV 252
Query: 139 --------------KGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHE 184
+GH + T+ + G VVSG +DN + VWD+ K L+ H
Sbjct: 253 FHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHT 310
Query: 185 GHIRSIDFHPLEFLLATGSADRTVKFWDLETFELI 219
I S + + S D T++ WDLE EL+
Sbjct: 311 DRIYSTIYDHERKRCISASMDTTIRIWDLENGELM 345
Score = 70.9 bits (172), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 61/255 (23%), Positives = 111/255 (43%), Gaps = 31/255 (12%)
Query: 3 KRGYKLQEFVAHSANVNCISIGK-KACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPV 61
K+G F H++ V C+ I + K ++++TG D +++W + K + S+
Sbjct: 191 KKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKES---SVPDHGEEH 247
Query: 62 DS-VAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCM 120
D + F + E E V L GH ++ V H G SG
Sbjct: 248 DYPLVFHTPE-----------------ENPYFVGVLRGHMASVRTVSGH--GNIVVSGSY 288
Query: 121 DTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDF 180
D L +WD+ + C++ GHT I + + + + +S D +++WDL G+L++
Sbjct: 289 DNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTL 348
Query: 181 KFHEGHIRSIDFHPL-EFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAI-TFHPDG 238
+GH + L + L + +AD +++ WD + S T + AI TF+
Sbjct: 349 ---QGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHH--TNLSAITTFYVSD 403
Query: 239 RTLFSGFDDNLKVYS 253
L SG ++ +Y+
Sbjct: 404 NILVSGSENQFNIYN 418
Score = 63.2 bits (152), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 48/210 (22%), Positives = 96/210 (45%), Gaps = 31/210 (14%)
Query: 73 VLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKK 132
V+ GA +I+++D K + L+GH A+++ G SG D +++WDI+K
Sbjct: 135 VITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKY-AHGGILVSGSTDRTVRVWDIKKG 193
Query: 133 GCIHTYKGH---TRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLL------HDF--K 181
C H ++GH R ++ + + + +++V+G DN + VW L + HD+
Sbjct: 194 CCTHVFEGHNSTVRCLDIVEY-KNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLV 252
Query: 182 FH------------EGH---IRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEV 226
FH GH +R++ H ++ +GS D T+ WD+ + +
Sbjct: 253 FHTPEENPYFVGVLRGHMASVRTVSGHG--NIVVSGSYDNTLIVWDVAQMKCLYILSGHT 310
Query: 227 TGVHAITF-HPDGRTLFSGFDDNLKVYSWE 255
+++ + H R + + D ++++ E
Sbjct: 311 DRIYSTIYDHERKRCISASMDTTIRIWDLE 340
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/166 (21%), Positives = 72/166 (43%), Gaps = 7/166 (4%)
Query: 13 AHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVL 72
H A+V +S +++G D + +W + + L L G + + S +D
Sbjct: 268 GHMASVRTVS---GHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKR 324
Query: 73 VLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKK 132
++ + I++WDLE +++ TL GH + + +F S D +++ WD
Sbjct: 325 CISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSD--KFLVSAAADGSIRGWDANDY 382
Query: 133 GCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLH 178
+Y T + D ++ G +N +++L +GKL+H
Sbjct: 383 SRKFSYHHTNLSAITTFYVSDN--ILVSGSENQFNIYNLRSGKLVH 426
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 45/79 (56%), Gaps = 4/79 (5%)
Query: 137 TYKGH-TRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPL 195
T +GH T I ++F + +V++G D +++V+D K L H+G + ++ +
Sbjct: 116 TLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKY-AH 172
Query: 196 EFLLATGSADRTVKFWDLE 214
+L +GS DRTV+ WD++
Sbjct: 173 GGILVSGSTDRTVRVWDIK 191
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 71.2 bits (173), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 51/214 (23%), Positives = 93/214 (43%), Gaps = 28/214 (13%)
Query: 30 FLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEE 89
++ITG DD+ + ++ L+ L G V ++ + +LV +G++ +++WD+++
Sbjct: 134 YVITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILV-SGSTDRTVRVWDIKK 192
Query: 90 SKMVRTLTGHKSNCTAVEFHPFG--EFFASGCMDTNLKIWDIRKKGCI------HTY--- 138
GH S ++ + ++ +G D L +W + K+ + H Y
Sbjct: 193 GCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLV 252
Query: 139 --------------KGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHE 184
+GH + T+ + G VVSG +DN + VWD+ K L+ H
Sbjct: 253 FHTPEENPYFVGVLRGHXASVRTV--SGHGNIVVSGSYDNTLIVWDVAQXKCLYILSGHT 310
Query: 185 GHIRSIDFHPLEFLLATGSADRTVKFWDLETFEL 218
I S + + S D T++ WDLE EL
Sbjct: 311 DRIYSTIYDHERKRCISASXDTTIRIWDLENGEL 344
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 61/255 (23%), Positives = 110/255 (43%), Gaps = 31/255 (12%)
Query: 3 KRGYKLQEFVAHSANVNCISIGK-KACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPV 61
K+G F H++ V C+ I + K ++++TG D +++W + K + S+
Sbjct: 191 KKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKES---SVPDHGEEH 247
Query: 62 DS-VAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCM 120
D + F + E E V L GH ++ V H G SG
Sbjct: 248 DYPLVFHTPE-----------------ENPYFVGVLRGHXASVRTVSGH--GNIVVSGSY 288
Query: 121 DTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDF 180
D L +WD+ + C++ GHT I + + + + +S D +++WDL G+L +
Sbjct: 289 DNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCISASXDTTIRIWDLENGELXYTL 348
Query: 181 KFHEGHIRSIDFHPL-EFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAI-TFHPDG 238
+GH + L + L + +AD +++ WD + S T + AI TF+
Sbjct: 349 ---QGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHH--TNLSAITTFYVSD 403
Query: 239 RTLFSGFDDNLKVYS 253
L SG ++ +Y+
Sbjct: 404 NILVSGSENQFNIYN 418
Score = 60.8 bits (146), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 48/210 (22%), Positives = 95/210 (45%), Gaps = 31/210 (14%)
Query: 73 VLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKK 132
V+ GA I+++D K + L+GH A+++ G SG D +++WDI+K
Sbjct: 135 VITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKY-AHGGILVSGSTDRTVRVWDIKKG 193
Query: 133 GCIHTYKGH---TRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLL------HDF--K 181
C H ++GH R ++ + + + +++V+G DN + VW L + HD+
Sbjct: 194 CCTHVFEGHNSTVRCLDIVEY-KNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLV 252
Query: 182 FH------------EGH---IRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEV 226
FH GH +R++ H ++ +GS D T+ WD+ + +
Sbjct: 253 FHTPEENPYFVGVLRGHXASVRTVSGHG--NIVVSGSYDNTLIVWDVAQXKCLYILSGHT 310
Query: 227 TGVHAITF-HPDGRTLFSGFDDNLKVYSWE 255
+++ + H R + + D ++++ E
Sbjct: 311 DRIYSTIYDHERKRCISASXDTTIRIWDLE 340
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/166 (21%), Positives = 71/166 (42%), Gaps = 7/166 (4%)
Query: 13 AHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVL 72
H A+V +S +++G D + +W + + L L G + + S +D
Sbjct: 268 GHXASVRTVS---GHGNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKR 324
Query: 73 VLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKK 132
++ + I++WDLE ++ TL GH + + +F S D +++ WD
Sbjct: 325 CISASXDTTIRIWDLENGELXYTLQGHTALVGLLRLSD--KFLVSAAADGSIRGWDANDY 382
Query: 133 GCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLH 178
+Y T + D ++ G +N +++L +GKL+H
Sbjct: 383 SRKFSYHHTNLSAITTFYVSDN--ILVSGSENQFNIYNLRSGKLVH 426
Score = 38.9 bits (89), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 44/79 (55%), Gaps = 4/79 (5%)
Query: 137 TYKGH-TRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPL 195
T +GH T I ++F + +V++G D ++V+D K L H+G + ++ +
Sbjct: 116 TLRGHXTSVITCLQF--EDNYVITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKY-AH 172
Query: 196 EFLLATGSADRTVKFWDLE 214
+L +GS DRTV+ WD++
Sbjct: 173 GGILVSGSTDRTVRVWDIK 191
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 71.2 bits (173), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 62/211 (29%), Positives = 90/211 (42%), Gaps = 24/211 (11%)
Query: 72 LVLAGASTGVIKLWDL----EESKMV---RTLTGHKSNCTAVEFHPFGE-FFASGCMDTN 123
+L+ + I LWD+ +E +++ TGH + V +H E F S D
Sbjct: 200 YLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQK 259
Query: 124 LKIWDIRKKGCI---HTYKGHTRGINTIRFTPDGRWVVS-GGFDNVVKVWDLTAGKL-LH 178
L IWD R HT HT +N + F P ++++ G D V +WDL KL LH
Sbjct: 260 LMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLH 319
Query: 179 DFKFHEGHIRSIDFHPL-EFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPD 237
F+ H+ I + + P E +LA+ DR + WDL ST G + F
Sbjct: 320 SFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHG 379
Query: 238 GRTLFSGFDDNLKVYSWEP----VICHDSVD 264
G T + +SW P +IC S D
Sbjct: 380 GHTA------KISDFSWNPNEPWIICSVSED 404
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 72/173 (41%), Gaps = 16/173 (9%)
Query: 96 LTGHKSNCTAVEFHP-FGEFFASGCMDTNLKIWDI-------RKKGCIHTYKGHTRGINT 147
L GH+ + ++P + S D + +WDI R + + GHT +
Sbjct: 181 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVED 240
Query: 148 IRFTPDGRWVV-SGGFDNVVKVWDL---TAGKLLHDFKFHEGHIRSIDFHPL-EFLLATG 202
+ + + S D + +WD K H H + + F+P EF+LATG
Sbjct: 241 VAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATG 300
Query: 203 SADRTVKFWDLETFEL-IGSTRPEVTGVHAITFHPDGRTLF--SGFDDNLKVY 252
SAD+TV WDL +L + S + + + P T+ SG D L V+
Sbjct: 301 SADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVW 353
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 63/176 (35%), Gaps = 59/176 (33%)
Query: 13 AHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVL 72
AH+A VNC+S + L TG D+ V L
Sbjct: 279 AHTAEVNCLSFNPYSEFILATGSADKTVAL------------------------------ 308
Query: 73 VLAGASTGVIKLWDLEESKM-VRTLTGHKSNCTAVEFHPFGE-FFASGCMDTNLKIWDIR 130
WDL K+ + + HK V++ P E AS D L +WD+
Sbjct: 309 ------------WDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLS 356
Query: 131 KKG--------------CIHTYKGHTRGINTIRFTPDGRWVV-SGGFDNVVKVWDL 171
K G + + GHT I+ + P+ W++ S DN+++VW +
Sbjct: 357 KIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQM 412
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 70.5 bits (171), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 63/210 (30%), Positives = 89/210 (42%), Gaps = 24/210 (11%)
Query: 73 VLAGASTGVIKLWDL----EESKMVRT---LTGHKSNCTAVEFHPFGE-FFASGCMDTNL 124
+L+ + I LWD+ +E K+V TGH + V +H E F S D L
Sbjct: 193 LLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKL 252
Query: 125 KIWDIRKKGCI---HTYKGHTRGINTIRFTPDGRWVVS-GGFDNVVKVWDLTAGKL-LHD 179
IWD R H+ HT +N + F P ++++ G D V +WDL KL LH
Sbjct: 253 MIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHS 312
Query: 180 FKFHEGHIRSIDFHPL-EFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDG 238
F+ H+ I + + P E +LA+ DR + WDL S G + F G
Sbjct: 313 FESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGG 372
Query: 239 RTLFSGFDDNLKVYSWEP----VICHDSVD 264
T + +SW P VIC S D
Sbjct: 373 HTA------KISDFSWNPNEPWVICSVSED 396
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 63/176 (35%), Gaps = 59/176 (33%)
Query: 13 AHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVL 72
AH+A VNC+S + L TG D+ V L
Sbjct: 271 AHTAEVNCLSFNPYSEFILATGSADKTVAL------------------------------ 300
Query: 73 VLAGASTGVIKLWDLEESKM-VRTLTGHKSNCTAVEFHPFGE-FFASGCMDTNLKIWDIR 130
WDL K+ + + HK V++ P E AS D L +WD+
Sbjct: 301 ------------WDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLS 348
Query: 131 KKG--------------CIHTYKGHTRGINTIRFTPDGRWVV-SGGFDNVVKVWDL 171
K G + + GHT I+ + P+ WV+ S DN+++VW +
Sbjct: 349 KIGEEQSPEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVWQM 404
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 67.0 bits (162), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 65/257 (25%), Positives = 119/257 (46%), Gaps = 18/257 (7%)
Query: 58 SSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKS--NCTAVEFHPFGEFF 115
S+ V SV + + G G++ ++D+E +RT+ GH++ C + H
Sbjct: 134 STYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWNRHVLSSGS 193
Query: 116 ASGCMDTNLKIWDIR-KKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAG 174
SG + + D+R I T +GH+ + + + DG + SGG DNVV++WD +
Sbjct: 194 RSGAIHHH----DVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSS 249
Query: 175 KLLHDFKFHEGHIRSIDFHPLEF-LLAT--GSADRTVKFWDLETFELIGSTRPEVTGVHA 231
H ++++ + P + LLAT G+ D+ + FW+ T + +T + V +
Sbjct: 250 IPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARV-NTVDAGSQVTS 308
Query: 232 ITFHPDGRTLFS--GF-DDNLKVYSWEPVICHDSVDM---GWSTLGDLCINDGKLLGCSF 285
+ + P + + S GF D+NL ++S+ VD+ L DG++L +
Sbjct: 309 LIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAA 368
Query: 286 YRNSVGIW-VADVSHVE 301
++ W V D HV+
Sbjct: 369 SDENLKFWRVYDGDHVK 385
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/220 (24%), Positives = 99/220 (45%), Gaps = 26/220 (11%)
Query: 7 KLQEFVAHSANVNCISIGKKACRFLITGGD--------DQKVNLWAIGKPTALMSLCGLS 58
KL+ H A V C+S R +++ G D ++ IG +L G S
Sbjct: 168 KLRTMAGHQARVGCLSWN----RHVLSSGSRSGAIHHHDVRIANHQIG------TLQGHS 217
Query: 59 SPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPF-GEFFAS 117
S V +A+ S + + +G + V+++WD S T T H + AV + P+ A+
Sbjct: 218 SEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLAT 277
Query: 118 --GCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSG-GF-DNVVKVWDLTA 173
G MD + W+ ++T ++ + ++ ++P + ++S GF DN + +W ++
Sbjct: 278 GGGTMDKQIHFWNAATGARVNTVDAGSQ-VTSLIWSPHSKEIMSTHGFPDNNLSIWSYSS 336
Query: 174 GKLLH--DFKFHEGHIRSIDFHPLEFLLATGSADRTVKFW 211
L D H+ + P +L+T ++D +KFW
Sbjct: 337 SGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFW 376
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 67.0 bits (162), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 62/210 (29%), Positives = 88/210 (41%), Gaps = 24/210 (11%)
Query: 73 VLAGASTGVIKLWDL----EESKMVRT---LTGHKSNCTAVEFHPFGE-FFASGCMDTNL 124
+L+ + + LWD+ +E K+V TGH + V +H E F S D L
Sbjct: 195 LLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKL 254
Query: 125 KIWDIRKKGCI---HTYKGHTRGINTIRFTPDGRWVVS-GGFDNVVKVWDLTAGKL-LHD 179
IWD R H HT +N + F P ++++ G D V +WDL KL LH
Sbjct: 255 XIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHT 314
Query: 180 FKFHEGHIRSIDFHPL-EFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDG 238
F+ H+ I + + P E +LA+ DR + WDL S G + F G
Sbjct: 315 FESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGG 374
Query: 239 RTLFSGFDDNLKVYSWEP----VICHDSVD 264
T + +SW P VIC S D
Sbjct: 375 HTA------KISDFSWNPNEPWVICSVSED 398
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 60/174 (34%), Gaps = 59/174 (33%)
Query: 13 AHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVL 72
AH+A VNC+S + L TG D+ V L
Sbjct: 273 AHTAEVNCLSFNPYSEFILATGSADKTVAL------------------------------ 302
Query: 73 VLAGASTGVIKLWDLEESKM-VRTLTGHKSNCTAVEFHPFGE-FFASGCMDTNLKIWDIR 130
WDL K+ + T HK V + P E AS D L +WD+
Sbjct: 303 ------------WDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLS 350
Query: 131 KKG--------------CIHTYKGHTRGINTIRFTPDGRWVV-SGGFDNVVKVW 169
K G + + GHT I+ + P+ WV+ S DN+ ++W
Sbjct: 351 KIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIXQIW 404
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 66.6 bits (161), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 62/210 (29%), Positives = 88/210 (41%), Gaps = 24/210 (11%)
Query: 73 VLAGASTGVIKLWDL----EESKMVRT---LTGHKSNCTAVEFHPFGE-FFASGCMDTNL 124
+L+ + + LWD+ +E K+V TGH + V +H E F S D L
Sbjct: 195 LLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKL 254
Query: 125 KIWDIRKKGCI---HTYKGHTRGINTIRFTPDGRWVVS-GGFDNVVKVWDLTAGKL-LHD 179
IWD R H HT +N + F P ++++ G D V +WDL KL LH
Sbjct: 255 MIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHT 314
Query: 180 FKFHEGHIRSIDFHPL-EFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDG 238
F+ H+ I + + P E +LA+ DR + WDL S G + F G
Sbjct: 315 FESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGG 374
Query: 239 RTLFSGFDDNLKVYSWEP----VICHDSVD 264
T + +SW P VIC S D
Sbjct: 375 HTA------KISDFSWNPNEPWVICSVSED 398
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 62/176 (35%), Gaps = 59/176 (33%)
Query: 13 AHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVL 72
AH+A VNC+S + L TG D+ V L
Sbjct: 273 AHTAEVNCLSFNPYSEFILATGSADKTVAL------------------------------ 302
Query: 73 VLAGASTGVIKLWDLEESKM-VRTLTGHKSNCTAVEFHPFGE-FFASGCMDTNLKIWDIR 130
WDL K+ + T HK V + P E AS D L +WD+
Sbjct: 303 ------------WDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLS 350
Query: 131 KKG--------------CIHTYKGHTRGINTIRFTPDGRWVV-SGGFDNVVKVWDL 171
K G + + GHT I+ + P+ WV+ S DN++++W +
Sbjct: 351 KIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQM 406
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 74/165 (44%), Gaps = 17/165 (10%)
Query: 101 SNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIH---TYKGHTRGINTIRFTPDGRWV 157
S C + ++P G AS D ++IW I +GH R + + ++P G ++
Sbjct: 17 SRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYL 76
Query: 158 VSGGFDNVVKVWDLTAGKLLHDFKF------HEGHIRSIDFHPLEFLLATGSADRTVKFW 211
S FD +W K DF+ HE ++S+ + P LLAT S D++V W
Sbjct: 77 ASASFDATTCIWK----KNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVW 132
Query: 212 DL---ETFELIGSTRPEVTGVHAITFHPDGRTLFSG-FDDNLKVY 252
++ + +E + V + +HP L S +DD +K+Y
Sbjct: 133 EVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLY 177
Score = 56.2 bits (134), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 87/195 (44%), Gaps = 16/195 (8%)
Query: 30 FLITGGDDQKVNLWAI-GKPTALMSLC--GLSSPVDSVAFDSAEVLVLAGASTGVIKLW- 85
L + G D+++ +W G S+ G V VA+ + + + +W
Sbjct: 30 LLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWK 89
Query: 86 -DLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKG---CIHTYKGH 141
+ ++ + V TL GH++ +V + P G A+ D ++ +W++ ++ C+ H
Sbjct: 90 KNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSH 149
Query: 142 TRGINTIRFTPDGRWVVSGGFDNVVKVW-----DLTAGKLLHDFKFHEGHIRSIDFHPLE 196
T+ + + + P + S +D+ VK++ D L + HE + S+ F P
Sbjct: 150 TQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATL---EGHESTVWSLAFDPSG 206
Query: 197 FLLATGSADRTVKFW 211
LA+ S DRTV+ W
Sbjct: 207 QRLASCSDDRTVRIW 221
Score = 31.6 bits (70), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 13 AHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTAL 51
AHS +VNC++ K L + DD +V W +P L
Sbjct: 301 AHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGL 339
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 64.7 bits (156), Expect = 3e-10, Method: Composition-based stats.
Identities = 50/203 (24%), Positives = 90/203 (44%), Gaps = 25/203 (12%)
Query: 31 LITGGDDQKVNLWAIGKP----TALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWD 86
L TG D+K+ L ++ ++ + SVA+ L+ AG+ + +W
Sbjct: 27 LATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWA 86
Query: 87 LEES-------KMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKG----CI 135
EES ++ + GH++ V + G + A+ D ++ IW+ + G CI
Sbjct: 87 KEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECI 146
Query: 136 HTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVW-----DLTAGKLLHDFKFHEGHIRSI 190
+ H++ + + + P + S +D+ V++W D +L+ HEG + S
Sbjct: 147 SVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNG---HEGTVWSS 203
Query: 191 DFHPLE--FLLATGSADRTVKFW 211
DF E F L +GS D TV+ W
Sbjct: 204 DFDKTEGVFRLCSGSDDSTVRVW 226
Score = 54.7 bits (130), Expect = 3e-07, Method: Composition-based stats.
Identities = 37/163 (22%), Positives = 77/163 (47%), Gaps = 17/163 (10%)
Query: 65 AFDSAEVLVLAGASTGVIKLWDL--EESKMVRTL--TGHKSNCTAVEFHPFGEFFASGCM 120
+FD ++ ++ G++ IKL + ++ ++ L T HK +V + P A+G
Sbjct: 19 SFDFSQGILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSF 78
Query: 121 DTNLKIWDIRKKGCIHTYK--------GHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLT 172
D+ + IW +++ T++ GH + + ++ DG ++ + D V +W+
Sbjct: 79 DSTVSIW-AKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETD 137
Query: 173 AG----KLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFW 211
+ + + H ++ + +HP E LLA+ S D TV+ W
Sbjct: 138 ESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIW 180
Score = 35.0 bits (79), Expect = 0.24, Method: Composition-based stats.
Identities = 39/136 (28%), Positives = 49/136 (36%), Gaps = 34/136 (25%)
Query: 166 VKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPE 225
VK D T +L D H+ IRS+ + P LLA GS D TV W E + R
Sbjct: 41 VKYDDFTLIDVL-DETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEE----SADR-- 93
Query: 226 VTGVHAITFHPDGRTLFSGFDDNLKVYSWEPVICHDSVDMGWSTLGDLCINDGKLLGCSF 285
TF D + G ++ +K +W NDG L
Sbjct: 94 -------TFEMDLLAIIEGHENEVKGVAWS--------------------NDGYYLATCS 126
Query: 286 YRNSVGIWVADVSHVE 301
SV IW D S E
Sbjct: 127 RDKSVWIWETDESGEE 142
Score = 33.5 bits (75), Expect = 0.74, Method: Composition-based stats.
Identities = 48/209 (22%), Positives = 89/209 (42%), Gaps = 26/209 (12%)
Query: 30 FLITGGDDQKVNLWAI---GKPTALMS-LCGLSSPVDSVAFDSAEVLVLAGASTGVIKLW 85
+L T D+ V +W G+ +S L S V V + +E L+ + + +++W
Sbjct: 121 YLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIW 180
Query: 86 -DLEES-KMVRTLTGHKSNCTAVEFHPFGEFF--ASGCMDTNLKIW--------DIRKKG 133
D ++ + V L GH+ + +F F SG D+ +++W D ++
Sbjct: 181 KDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWV 240
Query: 134 CIHTYKG-HTRGINTIRFTPDGRWVVSGGFDNVVKV-------WDLTAGKLLHDFKFHEG 185
C H R + + + +G + S G D V+ V W + A + L +
Sbjct: 241 CEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEIN 299
Query: 186 HIRSIDFHPLEFLLATGSADRTVKFWDLE 214
++ ++ + + +LATG D V FW LE
Sbjct: 300 VVKWLELNG-KTILATGGDDGIVNFWSLE 327
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 48/203 (23%), Positives = 90/203 (44%), Gaps = 19/203 (9%)
Query: 70 EVLVLAGASTGVIKLWDLEESKMVRTL-----TGHKSNCTAVEFHPF-GEFFASGCMDTN 123
E ++ G+ LWD+ + + +GH ++ ++ + F SG DT
Sbjct: 170 ETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTT 229
Query: 124 LKIWDIRKKG-CIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKF 182
+++WD+R + TY GH IN+++F PDG+ +G D +++D+ G L +
Sbjct: 230 VRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNR 289
Query: 183 HEGH-------IRSIDFHPLEFLLATGSADRTVKFWDLETFELI---GSTRPEVTG-VHA 231
+ S+ F LL G ++ WD E++ G+ + G +
Sbjct: 290 EPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISC 349
Query: 232 ITFHPDGRTLFSG-FDDNLKVYS 253
+ DG L +G +D NLK+++
Sbjct: 350 LGLSSDGSALCTGSWDKNLKIWA 372
Score = 58.2 bits (139), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 56/239 (23%), Positives = 105/239 (43%), Gaps = 30/239 (12%)
Query: 48 PTALM---SLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCT 104
PT L+ +L G S V S+ + + +++ + G + +W+ S+ + H
Sbjct: 53 PTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVM 112
Query: 105 AVEFHPFGEFFASGCMDTNLKIWDIRKKG-------CIHTYKGHTRGINTIRFTPDGRW- 156
F P G+ A G +D+ I+++ + GH ++ ++ PD
Sbjct: 113 ECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETR 172
Query: 157 VVSGGFDNVVKVWDLTAGKLLHDF--KFHEGH---IRSIDFHPLEF-LLATGSADRTVKF 210
+++G D +WD+T G+ + F +F GH + S+ + L + +GS D TV+
Sbjct: 173 LITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRL 232
Query: 211 WDLE-TFELIGSTRPEVTGVHAITFHPDGRTLFSGFDDN------------LKVYSWEP 256
WDL T + + ++++ F PDG+ +G DD L+VY+ EP
Sbjct: 233 WDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREP 291
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 47/211 (22%), Positives = 77/211 (36%), Gaps = 54/211 (25%)
Query: 13 AHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVL 72
H+A+V +SI I+G D V L
Sbjct: 203 GHTADVLSLSINSLNANMFISGSCDTTVRL------------------------------ 232
Query: 73 VLAGASTGVIKLWDLE-ESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRK 131
WDL S+ VRT GH+ + +V+F P G+ F +G D +++D+R
Sbjct: 233 ------------WDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRT 280
Query: 132 KGCIHTYK-------GHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDF---- 180
+ Y + ++ F+ GR + +G + VWD +++ +
Sbjct: 281 GHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQ 340
Query: 181 KFHEGHIRSIDFHPLEFLLATGSADRTVKFW 211
HEG I + L TGS D+ +K W
Sbjct: 341 NSHEGRISCLGLSSDGSALCTGSWDKNLKIW 371
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 60.1 bits (144), Expect = 6e-09, Method: Composition-based stats.
Identities = 56/231 (24%), Positives = 101/231 (43%), Gaps = 13/231 (5%)
Query: 30 FLITGGDDQKVN---LWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWD 86
L+ GG D +N L+A L +L G V S++F +V++G+ K+W
Sbjct: 73 LLLFGGKDTXINGVPLFATSGEDPLYTLIGHQGNVCSLSFQDG--VVISGSWDKTAKVW- 129
Query: 87 LEESKMVRTLTGHKSNCTAVEFHPFGEF-FASGCMDTNLKIWDIRKKGCIHTYKG-HTRG 144
+E +V L H ++ + F E F + D +K+W K I T+ G H
Sbjct: 130 -KEGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQNDK--VIKTFSGIHNDV 186
Query: 145 INTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSA 204
+ + DG ++ S D ++K+ D G +L ++ HE + I P +++ G
Sbjct: 187 VRHLAVVDDGHFI-SCSNDGLIKLVDXHTGDVLRTYEGHESFVYCIKLLPNGDIVSCGE- 244
Query: 205 DRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGFDDNLKVYSWE 255
DRTV+ W E L + ++ +G + D+ ++++S E
Sbjct: 245 DRTVRIWSKENGSLKQVITLPAISIWSVDCXSNGDIIVGSSDNLVRIFSQE 295
Score = 35.8 bits (81), Expect = 0.15, Method: Composition-based stats.
Identities = 36/167 (21%), Positives = 71/167 (42%), Gaps = 4/167 (2%)
Query: 3 KRGYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVD 62
K G + AH+A+V + + +T D+ + LW K + + G+ + V
Sbjct: 130 KEGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQNDK--VIKTFSGIHNDVV 187
Query: 63 SVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDT 122
+ ++ ++ G+IKL D ++RT GH+S ++ P G+ + G D
Sbjct: 188 RHLAVVDDGHFISCSNDGLIKLVDXHTGDVLRTYEGHESFVYCIKLLPNGDIVSCG-EDR 246
Query: 123 NLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVW 169
++IW I ++ +G +V G DN+V+++
Sbjct: 247 TVRIWSKENGSLKQVITLPAISIWSVDCXSNGDIIV-GSSDNLVRIF 292
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 56.6 bits (135), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 54/122 (44%), Gaps = 3/122 (2%)
Query: 62 DSVAFDSAEVLV---LAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASG 118
D A D+A++ + + G + G IK+ D + H S T ++F P GE S
Sbjct: 95 DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISS 154
Query: 119 CMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLH 178
D LKIW ++ T GH + I GR V+S D +++W+ G +H
Sbjct: 155 SQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIH 214
Query: 179 DF 180
F
Sbjct: 215 TF 216
Score = 38.1 bits (87), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 28/127 (22%), Positives = 52/127 (40%), Gaps = 25/127 (19%)
Query: 66 FDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLK 125
F S E L+ + + +K+W +++ RTL GH++ T + G S +D ++
Sbjct: 145 FPSGEALI-SSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIR 203
Query: 126 IWDIRKKGCIHTYK----------------GHTRGI--------NTIRFTPDGRWVVSGG 161
+W+ IHT+ G R + N + F G++V++G
Sbjct: 204 LWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGH 263
Query: 162 FDNVVKV 168
V+ V
Sbjct: 264 VSGVITV 270
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 56.6 bits (135), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 54/122 (44%), Gaps = 3/122 (2%)
Query: 62 DSVAFDSAEVLV---LAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASG 118
D A D+A++ + + G + G IK+ D + H S T ++F P GE S
Sbjct: 98 DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISS 157
Query: 119 CMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLH 178
D LKIW ++ T GH + I GR V+S D +++W+ G +H
Sbjct: 158 SQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIH 217
Query: 179 DF 180
F
Sbjct: 218 TF 219
Score = 38.1 bits (87), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 28/127 (22%), Positives = 52/127 (40%), Gaps = 25/127 (19%)
Query: 66 FDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLK 125
F S E L+ + + +K+W +++ RTL GH++ T + G S +D ++
Sbjct: 148 FPSGEALI-SSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIR 206
Query: 126 IWDIRKKGCIHTYK----------------GHTRGI--------NTIRFTPDGRWVVSGG 161
+W+ IHT+ G R + N + F G++V++G
Sbjct: 207 LWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGH 266
Query: 162 FDNVVKV 168
V+ V
Sbjct: 267 VSGVITV 273
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/213 (22%), Positives = 90/213 (42%), Gaps = 29/213 (13%)
Query: 71 VLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHP-FGEFFASGCMDTNLKIWDI 129
LV G ++L DL+ L GH+ AV + P + A+ D+ +K+WD+
Sbjct: 157 CLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDV 216
Query: 130 RK-KGCIHTYK---------------GHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTA 173
R+ GC+ T H +N + FT DG +++ G DN +++W+ +
Sbjct: 217 RRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSN 276
Query: 174 GKLLHDFKFHEGHIRSIDFHPLEFLLATGSADR--------TVKFWDLETFELIGSTRPE 225
G+ + + G + + L+F ++ G + T+ + + + E I +
Sbjct: 277 GE---NTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGH 333
Query: 226 VTGVHAITFHPDGRTLFSGFDDNLKVYSWEPVI 258
V F + + L+SG D + +W P +
Sbjct: 334 YKTVDCCVFQSNFQELYSGSRD-CNILAWVPSL 365
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 70/163 (42%), Gaps = 27/163 (16%)
Query: 73 VLAGASTGVIKLWDLEESKMVRTLTG-------------HKSNCTAVEFHPFGE-FFASG 118
+L+G S GVI L+DLE S T H+ + V+++P F S
Sbjct: 59 MLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSS 118
Query: 119 CMDTNLKIWD---IRKKGCIH----TYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDL 171
D LK+WD ++ + Y H ++T V G V++ DL
Sbjct: 119 SFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCL-----VAVGTRGPKVQLCDL 173
Query: 172 TAGKLLHDFKFHEGHIRSIDFHP-LEFLLATGSADRTVKFWDL 213
+G H + H I ++ + P +++LAT SAD VK WD+
Sbjct: 174 KSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDV 216
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 48/92 (52%), Gaps = 15/92 (16%)
Query: 141 HTRGINTIRFTP-DGRWVVSGGFDNVVKVWDL--TAGKLLHDFK-----------FHEGH 186
H GINT+ P +GR+++SGG D V+ ++DL ++ + + K H
Sbjct: 42 HGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYS 101
Query: 187 IRSIDFHPLEF-LLATGSADRTVKFWDLETFE 217
+ ++ ++P + + + S D+T+K WD T +
Sbjct: 102 VETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQ 133
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 93/196 (47%), Gaps = 21/196 (10%)
Query: 73 VLAGASTGVIKLWDL---EESKMVRTLTGHKSNCTAVEFHPFG--EFFASGCMDTNLKIW 127
V G+ G I LW+ ++ ++ + G + T ++F+P +F+AS M+ ++
Sbjct: 135 VAVGSKGGDIMLWNFGIKDKPTFIKGI-GAGGSITGLKFNPLNTNQFYASS-MEGTTRLQ 192
Query: 128 DIRKKGCIHTYKGHTRGIN----TIRFTPDGRWVVSGGFDNVVKVWDLTA-GKLLHDFKF 182
D KG I + IN ++ + R VV+G DNV V L GK L + +
Sbjct: 193 DF--KGNILRVFASSDTINIWFCSLDVSASSRMVVTG--DNVGNVILLNMDGKELWNLRM 248
Query: 183 HEGHIRSIDFHPL-EFLLATGSADRTVKFWDLETFELIGS---TRPEVTGVHAITFHPDG 238
H+ + + +P ++ LAT S D+TVK WDL S + P V+A F PDG
Sbjct: 249 HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDG 308
Query: 239 -RTLFSGFDDNLKVYS 253
R L + ++VYS
Sbjct: 309 ARLLTTDQKSEIRVYS 324
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 93/196 (47%), Gaps = 21/196 (10%)
Query: 73 VLAGASTGVIKLWDL---EESKMVRTLTGHKSNCTAVEFHPFG--EFFASGCMDTNLKIW 127
V G+ G I LW+ ++ ++ + G + T ++F+P +F+AS M+ ++
Sbjct: 136 VAVGSKGGDIMLWNFGIKDKPTFIKGI-GAGGSITGLKFNPLNTNQFYASS-MEGTTRLQ 193
Query: 128 DIRKKGCIHTYKGHTRGIN----TIRFTPDGRWVVSGGFDNVVKVWDLTA-GKLLHDFKF 182
D KG I + IN ++ + R VV+G DNV V L GK L + +
Sbjct: 194 DF--KGNILRVFASSDTINIWFCSLDVSASSRMVVTG--DNVGNVILLNMDGKELWNLRM 249
Query: 183 HEGHIRSIDFHPL-EFLLATGSADRTVKFWDLETFELIGS---TRPEVTGVHAITFHPDG 238
H+ + + +P ++ LAT S D+TVK WDL S + P V+A F PDG
Sbjct: 250 HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDG 309
Query: 239 -RTLFSGFDDNLKVYS 253
R L + ++VYS
Sbjct: 310 ARLLTTDQKSEIRVYS 325
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 54.3 bits (129), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 93/196 (47%), Gaps = 21/196 (10%)
Query: 73 VLAGASTGVIKLWDL---EESKMVRTLTGHKSNCTAVEFHPFG--EFFASGCMDTNLKIW 127
V G+ G I LW+ ++ ++ + G + T ++F+P +F+AS M+ ++
Sbjct: 135 VAVGSKGGDIMLWNFGIKDKPTFIKGI-GAGGSITGLKFNPLNTNQFYASS-MEGTTRLQ 192
Query: 128 DIRKKGCIHTYKGHTRGIN----TIRFTPDGRWVVSGGFDNVVKVWDLTA-GKLLHDFKF 182
D KG I + IN ++ + R VV+G DNV V L GK L + +
Sbjct: 193 DF--KGNILRVFASSDTINIWFCSLDVSASSRMVVTG--DNVGNVILLNMDGKELWNLRM 248
Query: 183 HEGHIRSIDFHPL-EFLLATGSADRTVKFWDLETFELIGS---TRPEVTGVHAITFHPDG 238
H+ + + +P ++ LAT S D+TVK WDL S + P V+A F PDG
Sbjct: 249 HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDG 308
Query: 239 -RTLFSGFDDNLKVYS 253
R L + ++VYS
Sbjct: 309 ARLLTTDQKSEIRVYS 324
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 94/196 (47%), Gaps = 23/196 (11%)
Query: 8 LQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGK----PTALMSLC-GLS-SPV 61
+ F HS++V + K L +GG++ ++ +W + K P+ L G S S V
Sbjct: 106 MARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSV 165
Query: 62 D---SVAFDSAEVLVLAGA-STGVIKLWDLEESKMVRTL------TGHKSNCTAVEFHPF 111
D S+A++ + V A A S+ +WDL+ K V L +G K + VE+HP
Sbjct: 166 DEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPK 225
Query: 112 GE---FFASGC-MDTNLKIWDIRKKGC-IHTY-KGHTRGINTIRFT-PDGRWVVSGGFDN 164
A+G D ++ IWD+R + T +GH +GI ++ + D ++S G DN
Sbjct: 226 NSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDN 285
Query: 165 VVKVWDLTAGKLLHDF 180
V +W+ + + L F
Sbjct: 286 TVLLWNPESAEQLSQF 301
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 62/220 (28%), Positives = 93/220 (42%), Gaps = 26/220 (11%)
Query: 58 SSPVDSVAFDSAEVLVLA-GASTGVIKLWDL----EESKMVRTLTGHKSNCTAVEF---- 108
SS V +V F++ + VLA G + G I +WD+ E LT +S + E
Sbjct: 113 SSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLA 172
Query: 109 --HPFGEFFASGCMDTNLKIWDIR-KKGCIH-TYKGHTRGI----NTIRFTPDG--RWVV 158
FAS IWD++ KK IH +Y GI + + + P R
Sbjct: 173 WNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVAT 232
Query: 159 SGGFDN--VVKVWDL-TAGKLLHDF-KFHEGHIRSIDF-HPLEFLLATGSADRTVKFWDL 213
+ G DN + +WDL A L + H+ I S+D+ H E LL + D TV W+
Sbjct: 233 ATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNP 292
Query: 214 ETFELIGSTRPEVTGVHAITFHPDGRTLF--SGFDDNLKV 251
E+ E + F P+ LF + FD+ ++V
Sbjct: 293 ESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEV 332
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 53.9 bits (128), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 71/171 (41%), Gaps = 31/171 (18%)
Query: 140 GHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLL 199
GH R + +++ +G + S D+ VW G+ L H G I SID
Sbjct: 30 GHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYC 89
Query: 200 ATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGFDDNLK------VY- 252
TGSAD ++K WD+ + + + + V V + F P G + D+ +K +Y
Sbjct: 90 VTGSADYSIKLWDVSNGQCVATWKSPVP-VKRVEFSPCGNYFLAILDNVMKNPGSINIYE 148
Query: 253 -------------SWEP---VICHDSVD----MGWSTLGDLCI---NDGKL 280
S EP +I H+ +D GWST G I DGK+
Sbjct: 149 IERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKI 199
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 59/127 (46%), Gaps = 2/127 (1%)
Query: 41 NLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHK 100
NL+ G + L G P+ V ++ L+ + + +W + + TL GH
Sbjct: 15 NLYFQGSHMKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHT 74
Query: 101 SNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSG 160
+++ F ++ +G D ++K+WD+ C+ T+K + + F+P G + ++
Sbjct: 75 GTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWKSPVP-VKRVEFSPCGNYFLA- 132
Query: 161 GFDNVVK 167
DNV+K
Sbjct: 133 ILDNVMK 139
Score = 37.0 bits (84), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 45/213 (21%), Positives = 84/213 (39%), Gaps = 28/213 (13%)
Query: 30 FLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEE 89
L + D ++W L +L G + + S+ D + G++ IKLWD+
Sbjct: 46 LLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSN 105
Query: 90 SKMVRTLTGHKSNCTA--VEFHPFGEFFASGCMDTNLK------IWDIRKKGCIH----- 136
+ V T KS VEF P G +F + +D +K I++I + H
Sbjct: 106 GQCVATW---KSPVPVKRVEFSPCGNYFLA-ILDNVMKNPGSINIYEIERDSATHELTKV 161
Query: 137 ---------TYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAG-KLLHDFKFHEGH 186
T++G ++ G+++++G D + +D++ + + HE
Sbjct: 162 SEEPIHKIITHEG-LDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKS 220
Query: 187 IRSIDFHPLEFLLATGSADRTVKFWDLETFELI 219
I + F P T S D D+ T +++
Sbjct: 221 ISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVL 253
Score = 29.6 bits (65), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 30/136 (22%), Positives = 62/136 (45%), Gaps = 15/136 (11%)
Query: 40 VNLWAIGKPTALMSLCGLSS-PVDSV----AFDSAEV--------LVLAGASTGVIKLWD 86
+N++ I + +A L +S P+ + D+A V ++AG G I +D
Sbjct: 144 INIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYD 203
Query: 87 LEES-KMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGI 145
+ + + V ++ H+ + + ++F P +F + DTN + D+ + Y+ +
Sbjct: 204 VSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYETDCP-L 262
Query: 146 NTIRFTPDGRWVVSGG 161
NT TP +++ GG
Sbjct: 263 NTAVITPLKEFIILGG 278
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 87/193 (45%), Gaps = 16/193 (8%)
Query: 40 VNLWAIGKPTALM--SLCGLSSPVDSVAFDSAEVLVLAGAST----GVIKLWDLEESKMV 93
V +W + T ++ ++ S PV +++DS + A G + L+D S
Sbjct: 83 VRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSN-- 140
Query: 94 RTLTGHKSNCTAVEFHPFGEF-FASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTP 152
LTG +V+F P F SG D + I++ T+ HT+ ++++R+ P
Sbjct: 141 GNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNP 200
Query: 153 DGRWVVSGGFDNVVKVWDLTAGKLLHDFK-------FHEGHIRSIDFHPLEFLLATGSAD 205
DG S G D + +++ G F+ H G + + + P +A+ SAD
Sbjct: 201 DGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASAD 260
Query: 206 RTVKFWDLETFEL 218
+T+K W++ T ++
Sbjct: 261 KTIKIWNVATLKV 273
Score = 37.7 bits (86), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 71/169 (42%), Gaps = 18/169 (10%)
Query: 96 LTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRK-----KGCIHTYKGHTRGIN---- 146
T H T + P G + ASG + N++IWD + K I + G + I+
Sbjct: 55 YTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSE 114
Query: 147 TIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLE-FLLATGSAD 205
+ R G G + V+ G + + S+DF P F + +GS D
Sbjct: 115 SKRIAAVGE-----GRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDD 169
Query: 206 RTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFS--GFDDNLKVY 252
TV ++ F+ + VH++ ++PDG +LF+ G D + +Y
Sbjct: 170 NTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDG-SLFASTGGDGTIVLY 217
Score = 29.6 bits (65), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 36/172 (20%), Positives = 75/172 (43%), Gaps = 15/172 (8%)
Query: 91 KMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGC--IHTYKGHTRGINTI 148
K+ + S+C A+ +F A G D+ + ++ + + T H I ++
Sbjct: 441 KLTEVPISYNSSCVALSNDK--QFVAVGGQDSKVHVYKLSGASVSEVKTIV-HPAEITSV 497
Query: 149 RFTPDGRWVVSGGFDNVVKVWDLTAG---KLLH--DFKFHEGHIRSIDFHPLEFLLATGS 203
F+ +G ++V+ D KV + +L H + FH + + + P LATGS
Sbjct: 498 AFSNNGAFLVAT--DQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGS 555
Query: 204 ADRTVKFWDLET---FELIGSTRPEVTGVHAITFHPDGRTLFSGFDDNLKVY 252
D +V W++ +I ++ V+++ + + + +G D N+K +
Sbjct: 556 LDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFW 607
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 83/192 (43%), Gaps = 30/192 (15%)
Query: 72 LVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGE-FFASGCMDTNLKIWDIR 130
LVL TG + K V + GH + + + P + ASG D + +W+I
Sbjct: 60 LVLPLGKTGRV-------DKNVPLVXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIP 112
Query: 131 KKGCIH-------TYKGHTRGINTIRFTPDGRWVV-SGGFDNVVKVWDLTAGKLLHDF-- 180
G + T +GHT+ + + + P + V+ S G DNV+ VWD+ G +
Sbjct: 113 DGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGP 172
Query: 181 KFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIG-------STRPEVTGVHAIT 233
H I S+D+ L+ T D+ V+ + ++ TRP VHA+
Sbjct: 173 DVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRP----VHAV- 227
Query: 234 FHPDGRTLFSGF 245
F +G+ L +GF
Sbjct: 228 FVSEGKILTTGF 239
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 83/192 (43%), Gaps = 30/192 (15%)
Query: 72 LVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGE-FFASGCMDTNLKIWDIR 130
LVL TG + K V + GH + + + P + ASG D + +W+I
Sbjct: 60 LVLPLGKTGRV-------DKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIP 112
Query: 131 KKGCIH-------TYKGHTRGINTIRFTPDGRWVV-SGGFDNVVKVWDLTAGKLLHDF-- 180
G + T +GHT+ + + + P + V+ S G DNV+ VWD+ G +
Sbjct: 113 DGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGP 172
Query: 181 KFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIG-------STRPEVTGVHAIT 233
H I S+D+ L+ T D+ V+ + ++ TRP VHA+
Sbjct: 173 DVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRP----VHAV- 227
Query: 234 FHPDGRTLFSGF 245
F +G+ L +GF
Sbjct: 228 FVSEGKILTTGF 239
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 54/105 (51%), Gaps = 5/105 (4%)
Query: 112 GEFFASGCMDTNLKIWDIRKKG--CIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVW 169
G F +G +++ W+++ G + HT + + ++ DG V + D K+W
Sbjct: 54 GNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMW 113
Query: 170 DLTAGKLLHDFKFHEGHIRSIDF--HPLEFLLATGSADRTVKFWD 212
DL++ + + + H+ +++I + P + TGS D+T+KFWD
Sbjct: 114 DLSSNQAIQIAQ-HDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWD 157
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 57/116 (49%), Gaps = 9/116 (7%)
Query: 145 INTIRFTPD---GRWVVSGGFDNVVKVWDLT-AGKLLHDFK-FHEGHIRSIDFHPLEFLL 199
I + F+P G ++++G + N V+ W++ +G+ + + H G + + + +
Sbjct: 42 IGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKV 101
Query: 200 ATGSADRTVKFWDLETFELIGSTRPE--VTGVHAITFHPDGRTLFSG-FDDNLKVY 252
T S D+T K WDL + + I + + V +H I P+ + +G +D LK +
Sbjct: 102 FTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIK-APNYSCVMTGSWDKTLKFW 156
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 77/167 (46%), Gaps = 13/167 (7%)
Query: 58 SSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTL-TGHKSNCTAVEFHPFGEFFA 116
S+P V ++ E++ + G I L+ + + VRT+ S AV F E
Sbjct: 150 SAPCTGVVCNNPEIVTVG--EDGRINLFRADHKEAVRTIDNADSSTLHAVTFLRTPEILT 207
Query: 117 SGCMDTNLKIWDIRKKGC----IHTYKGHTRGINTIRFTPDGRWVVS-GGFDNVVKVWDL 171
+ LKIWD R++G I + G ++ + P+ + VV+ GG D ++ +WD+
Sbjct: 208 VNSIG-QLKIWDFRQQGNEPSQILSLTGDRVPLHCVDRHPNQQHVVATGGQDGMLSIWDV 266
Query: 172 TAGKL-LHDFKFHEGHIRSIDFHPL--EFLLATGSADRTVKFWDLET 215
G + + K HE + + FHP E L T S D ++ WD T
Sbjct: 267 RQGTMPVSLLKAHEAEMWEVHFHPSNPEHLF-TCSEDGSLWHWDAST 312
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/189 (20%), Positives = 78/189 (41%), Gaps = 12/189 (6%)
Query: 73 VLAGASTGVIKLWDLEE------SKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKI 126
+L + +G ++LW+L+E SK + H + V G SG D +K+
Sbjct: 96 ILVASDSGAVELWELDENETLIVSKFCK--YEHDDIVSTVSVLSSGTQAVSGSKDICIKV 153
Query: 127 WDIRKKGCIHTYKGHTRGINTIRFTPDGRWV-VSGGFDNVVKVWDLTAGKLLHDFKFHE- 184
WD+ ++ + +Y+ H + + +P V +S DN + +WD K
Sbjct: 154 WDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAP 213
Query: 185 GHI-RSIDFHPLEF-LLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLF 242
G++ S+ +HP + + G + TV D ++ + S+ V + F P
Sbjct: 214 GYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFL 273
Query: 243 SGFDDNLKV 251
+ ++ +
Sbjct: 274 ASLSEDCSL 282
Score = 34.7 bits (78), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 54/127 (42%), Gaps = 8/127 (6%)
Query: 8 LQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSP---VDSV 64
L + AH+A V C++ ++ +D ++ LW P + G S+P S+
Sbjct: 162 LSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQI-GCSAPGYLPTSL 220
Query: 65 AF--DSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFG-EFFASGCMD 121
A+ +EV V G G + L D + + V + H T + F P F AS D
Sbjct: 221 AWHPQQSEVFVF-GDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSED 279
Query: 122 TNLKIWD 128
+L + D
Sbjct: 280 CSLAVLD 286
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 30/140 (21%), Positives = 55/140 (39%), Gaps = 11/140 (7%)
Query: 126 IWDIRKKGCIHTYKGH-TRGINTIRFTPDGRWVVSGGF-----DNVVKVWDLTAGKLLHD 179
+W + K C +G + G+ T D WV G V++W+L + L
Sbjct: 60 LW-LFKDPCAAPNEGFCSAGVQTEAGVADLTWVGERGILVASDSGAVELWELDENETLIV 118
Query: 180 FKF----HEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFH 235
KF H+ + ++ +GS D +K WDL ++ S R V +
Sbjct: 119 SKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAAS 178
Query: 236 PDGRTLFSGFDDNLKVYSWE 255
P ++F ++ ++ W+
Sbjct: 179 PHKDSVFLSCSEDNRILLWD 198
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 47/94 (50%), Gaps = 4/94 (4%)
Query: 134 CIHTYKGHTRGINTIRFTP-DGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGH---IRS 189
CI Y GH IN ++F P D ++S D+ +++W++ L+ F EGH + S
Sbjct: 143 CIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLS 202
Query: 190 IDFHPLEFLLATGSADRTVKFWDLETFELIGSTR 223
D+ L + + D ++K W + + ++ + +
Sbjct: 203 ADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIK 236
Score = 39.7 bits (91), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/131 (22%), Positives = 64/131 (48%), Gaps = 11/131 (8%)
Query: 68 SAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFG-EFFASGCMDTNLKI 126
S +L +AG S G+I++ + + ++ GH + ++FHP S D L++
Sbjct: 120 SHPLLAVAG-SRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRL 178
Query: 127 WDIRKKGCIHTY---KGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFH 183
W+I+ + + +GH + + + G ++S G D+ +K+W + + ++++ K
Sbjct: 179 WNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIK-- 236
Query: 184 EGHIRSIDFHP 194
S D++P
Sbjct: 237 ----ESYDYNP 243
>pdb|3DWL|C Chain C, Crystal Structure Of Fission Yeast Arp2/3 Complex Lacking
The Arp2 Subunit
pdb|3DWL|H Chain H, Crystal Structure Of Fission Yeast Arp2/3 Complex Lacking
The Arp2 Subunit
Length = 377
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 53/229 (23%), Positives = 85/229 (37%), Gaps = 41/229 (17%)
Query: 57 LSSPVDSVAFDSAEVLVLAGASTGVIKLW--DLEESKMVRTLTGHKSNCTAVEFHPFGEF 114
L P AF+S + +T ++L+ D K RT + H T V++ P
Sbjct: 10 LPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNR 69
Query: 115 FASGCMDTNLKIWDIRKKGCIHTYKGH------TRGINTIRFTPDGRWVVSGGFDNVVKV 168
+ D N +++ R G T+K R +R++P+ G V+ V
Sbjct: 70 IVTCSQDRNAYVYEKRPDG---TWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISV 126
Query: 169 --------WDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRT------------- 207
W ++ H + I S+D+HP LLA G ADR
Sbjct: 127 CYFEQENDWWVSK----HLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDA 182
Query: 208 ---VKFWDLET-FELIGSTRPEVTGVHAITFHPDGRTL-FSGFDDNLKV 251
W F + + P VHA+ F P G L ++G D ++ +
Sbjct: 183 KPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGHDSSVTI 231
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 47/94 (50%), Gaps = 4/94 (4%)
Query: 134 CIHTYKGHTRGINTIRFTP-DGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGH---IRS 189
CI Y GH IN ++F P D ++S D+ +++W++ L+ F EGH + S
Sbjct: 106 CIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLS 165
Query: 190 IDFHPLEFLLATGSADRTVKFWDLETFELIGSTR 223
D+ L + + D ++K W + + ++ + +
Sbjct: 166 ADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIK 199
Score = 38.1 bits (87), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 29/131 (22%), Positives = 64/131 (48%), Gaps = 11/131 (8%)
Query: 68 SAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFG-EFFASGCMDTNLKI 126
S +L +AG S G+I++ + + ++ GH + ++FHP S D L++
Sbjct: 83 SHPLLAVAG-SRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRL 141
Query: 127 WDIRKKGCIHTY---KGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFH 183
W+I+ + + +GH + + + G ++S G D+ +K+W + + ++++ K
Sbjct: 142 WNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIK-- 199
Query: 184 EGHIRSIDFHP 194
S D++P
Sbjct: 200 ----ESYDYNP 206
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 47/94 (50%), Gaps = 4/94 (4%)
Query: 134 CIHTYKGHTRGINTIRFTP-DGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGH---IRS 189
CI Y GH IN ++F P D ++S D+ +++W++ L+ F EGH + S
Sbjct: 107 CIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLS 166
Query: 190 IDFHPLEFLLATGSADRTVKFWDLETFELIGSTR 223
D+ L + + D ++K W + + ++ + +
Sbjct: 167 ADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIK 200
Score = 38.1 bits (87), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 29/131 (22%), Positives = 64/131 (48%), Gaps = 11/131 (8%)
Query: 68 SAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFG-EFFASGCMDTNLKI 126
S +L +AG S G+I++ + + ++ GH + ++FHP S D L++
Sbjct: 84 SHPLLAVAG-SRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRL 142
Query: 127 WDIRKKGCIHTY---KGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFH 183
W+I+ + + +GH + + + G ++S G D+ +K+W + + ++++ K
Sbjct: 143 WNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIK-- 200
Query: 184 EGHIRSIDFHP 194
S D++P
Sbjct: 201 ----ESYDYNP 207
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 47/94 (50%), Gaps = 4/94 (4%)
Query: 134 CIHTYKGHTRGINTIRFTP-DGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGH---IRS 189
CI Y GH IN ++F P D ++S D+ +++W++ L+ F EGH + S
Sbjct: 102 CIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLS 161
Query: 190 IDFHPLEFLLATGSADRTVKFWDLETFELIGSTR 223
D+ L + + D ++K W + + ++ + +
Sbjct: 162 ADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIK 195
Score = 38.5 bits (88), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 29/131 (22%), Positives = 64/131 (48%), Gaps = 11/131 (8%)
Query: 68 SAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFG-EFFASGCMDTNLKI 126
S +L +AG S G+I++ + + ++ GH + ++FHP S D L++
Sbjct: 79 SHPLLAVAG-SRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRL 137
Query: 127 WDIRKKGCIHTY---KGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFH 183
W+I+ + + +GH + + + G ++S G D+ +K+W + + ++++ K
Sbjct: 138 WNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIK-- 195
Query: 184 EGHIRSIDFHP 194
S D++P
Sbjct: 196 ----ESYDYNP 202
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 47/94 (50%), Gaps = 4/94 (4%)
Query: 134 CIHTYKGHTRGINTIRFTP-DGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGH---IRS 189
CI Y GH IN ++F P D ++S D+ +++W++ L+ F EGH + S
Sbjct: 106 CIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLS 165
Query: 190 IDFHPLEFLLATGSADRTVKFWDLETFELIGSTR 223
D+ L + + D ++K W + + ++ + +
Sbjct: 166 ADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIK 199
Score = 38.1 bits (87), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 29/131 (22%), Positives = 64/131 (48%), Gaps = 11/131 (8%)
Query: 68 SAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFG-EFFASGCMDTNLKI 126
S +L +AG S G+I++ + + ++ GH + ++FHP S D L++
Sbjct: 83 SHPLLAVAG-SRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRL 141
Query: 127 WDIRKKGCIHTY---KGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFH 183
W+I+ + + +GH + + + G ++S G D+ +K+W + + ++++ K
Sbjct: 142 WNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIK-- 199
Query: 184 EGHIRSIDFHP 194
S D++P
Sbjct: 200 ----ESYDYNP 206
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 43/98 (43%), Gaps = 1/98 (1%)
Query: 80 GVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYK 139
G I ++ + E L GH + +EF+ + S D L+IW + +
Sbjct: 227 GAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFY 286
Query: 140 GHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLL 177
GH++ I + + D + V+S D V++W L LL
Sbjct: 287 GHSQSIVSASWVGDDK-VISCSMDGSVRLWSLKQNTLL 323
Score = 33.9 bits (76), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 16/82 (19%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Query: 103 CTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGF 162
T + + G +G + L++W+ + ++ H I ++++ DG ++S
Sbjct: 111 VTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDV 169
Query: 163 DNVVKVWDLTAGKLLHDFKFHE 184
+NV +W++ +G ++ F+ E
Sbjct: 170 ENVTILWNVISGTVMQHFELKE 191
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 29/144 (20%), Positives = 59/144 (40%), Gaps = 4/144 (2%)
Query: 29 RFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLE 88
+F+I G + ++ I + T L G P+ + F+ L+L+ + G +++W
Sbjct: 219 KFVIPG-PKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGG 277
Query: 89 ESKMVRTLTGHKSNCTAVEFHPFGEFFASGC-MDTNLKIWDIRKKGCIHTYKGHTRGINT 147
GH + + + G+ C MD ++++W +++ + I
Sbjct: 278 NGNSQNCFYGHSQSIVSASW--VGDDKVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFA 335
Query: 148 IRFTPDGRWVVSGGFDNVVKVWDL 171
R + DG+ D V V+DL
Sbjct: 336 GRISQDGQKYAVAFMDGQVNVYDL 359
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 34/157 (21%), Positives = 67/157 (42%), Gaps = 23/157 (14%)
Query: 73 VLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKK 132
++ G G ++LW+ + ++ L H++ +V+++ G S ++ +W++
Sbjct: 123 IVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISG 181
Query: 133 GCIHTYKGHTRG---INTIRFTPDG------RWV-----VSGGFDNVVKVWDLT----AG 174
+ ++ G IN + DG WV V G + V+ +T G
Sbjct: 182 TVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTG 241
Query: 175 KLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFW 211
KL+ H G I ++F+ LL + S D T++ W
Sbjct: 242 KLIG----HHGPISVLEFNDTNKLLLSASDDGTLRIW 274
Score = 30.4 bits (67), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 47/243 (19%), Positives = 101/243 (41%), Gaps = 29/243 (11%)
Query: 31 LITGGDDQKVNLWAIGKPTALMSLCGLS-SPVDSVAFDSAEVLVLAGASTGVIKLWDLEE 89
++TG ++ ++ LW K AL+++ +P+ SV ++ +++ V LW++
Sbjct: 123 IVTGVENGELRLW--NKTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVIS 180
Query: 90 SKMVRTLTGHKSNCTAV--EFHPFGEFFASGCMDTNLKIWDIRK------KGCIHTYK-- 139
+++ ++ +++ E H G + +++ D K KG I Y+
Sbjct: 181 GTVMQHFELKETGGSSINAENHS-----GDGSLGVDVEWVDDDKFVIPGPKGAIFVYQIT 235
Query: 140 ---------GHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSI 190
GH I+ + F + ++S D +++W G + F H I S
Sbjct: 236 EKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSA 295
Query: 191 DFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGF-DDNL 249
+ + +++ S D +V+ W L+ L+ + + + A DG+ F D +
Sbjct: 296 SWVGDDKVISC-SMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQV 354
Query: 250 KVY 252
VY
Sbjct: 355 NVY 357
>pdb|4A08|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Duplex (
Purine At D-1 Position) At 3.0 A Resolution (Cpd 1)
pdb|4A09|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 15 Bp Cpd-Duplex
(Purine At D-1 Position) At 3.1 A Resolution (Cpd 2)
pdb|4A0A|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.6 A Resolution (Cpd 3)
pdb|4A0B|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0B|D Chain D, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0K|D Chain D, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|B Chain B, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|D Chain D, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 382
Score = 39.7 bits (91), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 80/180 (44%), Gaps = 24/180 (13%)
Query: 99 HKSNCTAVEFHPFGEFF-ASGCMDTNLKIWDIRKKGCIHTYKG---HTRGINTIRFTP-D 153
HK+ T EF+P ++ A+ +D +K+WD+R ++Y H + +N F P D
Sbjct: 202 HKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTD 261
Query: 154 GRWVVSGGFDNVVKV-----WDLTAGKLLHDFKFHEGHIRSID--FHPLEFLLATGSA-- 204
+++ N ++V W ++H + + H+ I +HP+ L+ G
Sbjct: 262 STKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQ-HLTPIKATWHPMYDLIVAGRYPD 320
Query: 205 -------DRTVKFWDLETFELIGSTR-PEVTGVHAIT-FHPDGRTLFSGFDDNLKVYSWE 255
RT+ +D + L+ R P G+ ++ F P G L SG N+ +++ E
Sbjct: 321 DQLLLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGMGFNILIWNRE 380
Score = 35.8 bits (81), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 6/79 (7%)
Query: 181 KFHEGHIRSIDFHP-LEFLLATGSADRTVKFWDLETFELIGST---RPEVTGVHAITFHP 236
K H+ + +F+P ++L+AT S D TVK WDL + S P V+A F+P
Sbjct: 200 KLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNP 259
Query: 237 DGRTLFSGFD--DNLKVYS 253
T D + ++VYS
Sbjct: 260 TDSTKLLTTDQRNEIRVYS 278
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 38.9 bits (89), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 50/211 (23%), Positives = 87/211 (41%), Gaps = 30/211 (14%)
Query: 31 LITGGDDQKVNLWAI-GKPTALM-SLCGLSSPVDSVAFDSAEV-LVLAGAST-GVIKLWD 86
L T D+ + ++ + G+ L+ +L G PV V + + +LA S G + +W
Sbjct: 24 LATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWK 83
Query: 87 LEESKM--VRTLTGHKSNCTAVEF--HPFGEFFASGCMDTNLKIWDIRKKGCIH--TYKG 140
E + + H ++ +V++ H +G D + + + ++ G
Sbjct: 84 EENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDA 143
Query: 141 HTRGINTIRFTP-----DG--------RWVVSGGFDNVVKVW----DLTAGKLLHDFKFH 183
H G+N+ + P DG R V+GG DN+VK+W D L + H
Sbjct: 144 HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGH 203
Query: 184 EGHIRSIDFHPLEFL---LATGSADRTVKFW 211
+R + + P L LA+ S DRT W
Sbjct: 204 SDWVRDVAWSPTVLLRSYLASVSQDRTCIIW 234
>pdb|3EI1|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4
Photoproduct Containing Dna-Duplex
pdb|3EI2|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Abasic Site
Containing Dna-Duplex
pdb|3EI3|B Chain B, Structure Of The Hsddb1-Drddb2 Complex
Length = 383
Score = 38.9 bits (89), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 80/178 (44%), Gaps = 24/178 (13%)
Query: 99 HKSNCTAVEFHPFGEFF-ASGCMDTNLKIWDIRKKGCIHTYKG---HTRGINTIRFTP-D 153
HK+ T EF+P ++ A+ +D +K+WD+R ++Y H + +N F P D
Sbjct: 203 HKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTD 262
Query: 154 GRWVVSGGFDNVVKV-----WDLTAGKLLHDFKFHEGHIRSID--FHPLEFLLATG---- 202
+++ N ++V W ++H + + H+ I +HP+ L+ G
Sbjct: 263 STKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQ-HLTPIKATWHPMYDLIVAGRYPD 321
Query: 203 -----SADRTVKFWDLETFELIGSTR-PEVTGVHAIT-FHPDGRTLFSGFDDNLKVYS 253
+ RT+ +D + L+ R P G+ ++ F P G L SG N+ +++
Sbjct: 322 DQLLLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGMGFNILIWN 379
Score = 35.4 bits (80), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 6/79 (7%)
Query: 181 KFHEGHIRSIDFHP-LEFLLATGSADRTVKFWDLETFELIGST---RPEVTGVHAITFHP 236
K H+ + +F+P ++L+AT S D TVK WDL + S P V+A F+P
Sbjct: 201 KLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNP 260
Query: 237 DGRTLFSGFD--DNLKVYS 253
T D + ++VYS
Sbjct: 261 TDSTKLLTTDQRNEIRVYS 279
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 37.7 bits (86), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 45/187 (24%), Positives = 75/187 (40%), Gaps = 28/187 (14%)
Query: 53 SLCGLSSPVDSVAFDSAEV-LVLAGAST-GVIKLWDLEESKM--VRTLTGHKSNCTAVEF 108
+L G PV V + + +LA S G + +W E + + H ++ +V++
Sbjct: 50 TLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQW 109
Query: 109 --HPFGEFFASGCMDTNLKIWDIRKKGCIH--TYKGHTRGINTIRFTP-----DG----- 154
H +G D + + + ++ G H G+N+ + P DG
Sbjct: 110 APHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGT 169
Query: 155 ---RWVVSGGFDNVVKVW----DLTAGKLLHDFKFHEGHIRSIDFHPLEFL---LATGSA 204
R V+GG DN+VK+W D L + H +R + + P L LA+ S
Sbjct: 170 KESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQ 229
Query: 205 DRTVKFW 211
DRT W
Sbjct: 230 DRTCIIW 236
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 37.7 bits (86), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 45/187 (24%), Positives = 75/187 (40%), Gaps = 28/187 (14%)
Query: 53 SLCGLSSPVDSVAFDSAEV-LVLAGAST-GVIKLWDLEESKM--VRTLTGHKSNCTAVEF 108
+L G PV V + + +LA S G + +W E + + H ++ +V++
Sbjct: 48 TLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQW 107
Query: 109 --HPFGEFFASGCMDTNLKIWDIRKKGCIH--TYKGHTRGINTIRFTP-----DG----- 154
H +G D + + + ++ G H G+N+ + P DG
Sbjct: 108 APHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGT 167
Query: 155 ---RWVVSGGFDNVVKVW----DLTAGKLLHDFKFHEGHIRSIDFHPLEFL---LATGSA 204
R V+GG DN+VK+W D L + H +R + + P L LA+ S
Sbjct: 168 KESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQ 227
Query: 205 DRTVKFW 211
DRT W
Sbjct: 228 DRTCIIW 234
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 37.4 bits (85), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 60/138 (43%), Gaps = 13/138 (9%)
Query: 124 LKIWDIRKKGCIHTYK----GHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHD 179
+++W+I +K + K H + T+ DG VSGG D VKVWDL+ +L
Sbjct: 117 VELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKS 176
Query: 180 FKFHEGHIRSIDFHPLE--FLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAI----T 233
+ H + + P + L+ G R + WD T + +TR + I T
Sbjct: 177 YNAHSSEVNCVAACPGKDTIFLSCGEDGR-ILLWD--TRKPKPATRIDFCASDTIPTSVT 233
Query: 234 FHPDGRTLFSGFDDNLKV 251
+HP+ F+ D+ V
Sbjct: 234 WHPEKDDTFACGDETGNV 251
Score = 34.3 bits (77), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 54/125 (43%), Gaps = 4/125 (3%)
Query: 8 LQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIG--KPTALMSLCGLSSPVDSVA 65
L+ + AHS+ VNC++ ++ G+D ++ LW KP + C + SV
Sbjct: 174 LKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVT 233
Query: 66 FDSAEVLVLA-GASTGVIKLWDLEESKMVRTLTGHKSNCTAVEF-HPFGEFFASGCMDTN 123
+ + A G TG + L +++ +T H N T + + + F AS D
Sbjct: 234 WHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCT 293
Query: 124 LKIWD 128
+ + D
Sbjct: 294 VAVLD 298
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 24/106 (22%), Positives = 45/106 (42%), Gaps = 5/106 (4%)
Query: 31 LITGGDDQKVNLWAIGKPTALM----SLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWD 86
++ D V LW I + +L+ + V +++ S ++G +K+WD
Sbjct: 108 ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWD 167
Query: 87 LEESKMVRTLTGHKSNCTAVEFHPFGE-FFASGCMDTNLKIWDIRK 131
L + ++++ H S V P + F S D + +WD RK
Sbjct: 168 LSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRK 213
Score = 29.6 bits (65), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 26/123 (21%), Positives = 50/123 (40%), Gaps = 9/123 (7%)
Query: 142 TRGINTIRFTPDGRWVVSGGF-----DNVVKVWDLTAGKLLHDFKF----HEGHIRSIDF 192
T G+ T D WV G V++W++ + L KF H+ ++++
Sbjct: 88 TAGVQTEAGVTDVAWVSEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSV 147
Query: 193 HPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGFDDNLKVY 252
+G D +VK WDL ++ S + V+ + P T+F ++ ++
Sbjct: 148 FSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRIL 207
Query: 253 SWE 255
W+
Sbjct: 208 LWD 210
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 37.4 bits (85), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 44/187 (23%), Positives = 75/187 (40%), Gaps = 28/187 (14%)
Query: 53 SLCGLSSPVDSVAFDSAEV-LVLAGAST-GVIKLWDLEESKM--VRTLTGHKSNCTAVEF 108
+L G PV V + + +LA S G + +W E + + H ++ +V++
Sbjct: 48 TLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQW 107
Query: 109 --HPFGEFFASGCMDTNLKIWDIRKKGCIH--TYKGHTRGINTIRFTP-----DG----- 154
H +G D + + + ++ G H G+N+ + P DG
Sbjct: 108 APHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGT 167
Query: 155 ---RWVVSGGFDNVVKVW----DLTAGKLLHDFKFHEGHIRSIDFHPLEFL---LATGSA 204
R V+GG DN+VK+W D L + H +R + + P L +A+ S
Sbjct: 168 KESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQ 227
Query: 205 DRTVKFW 211
DRT W
Sbjct: 228 DRTCIIW 234
>pdb|3GRE|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Vps15 Wd
Repeat Domain
Length = 437
Score = 36.2 bits (82), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 5/83 (6%)
Query: 61 VDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLT-GHKSNCTAVEFHPF----GEFF 115
V S+ D +++ G + G+I +WD+ + ++R+ + G + T VE F
Sbjct: 217 VSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIV 276
Query: 116 ASGCMDTNLKIWDIRKKGCIHTY 138
G T L IW+ K C + +
Sbjct: 277 VGGSSKTFLTIWNFVKGHCQYAF 299
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 36.2 bits (82), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 57/123 (46%), Gaps = 17/123 (13%)
Query: 64 VAFDSAEVLVLAGASTGVIKLWDLEESKMVRT--LTGHKSNCTAVEFHPFG--------- 112
++ +E + AG G I L+DL+ S+ V+T S A+ + P
Sbjct: 494 ISISPSETYIAAGDVXGKILLYDLQ-SREVKTSRWAFRTSKINAISWKPAEKGANEEEIE 552
Query: 113 -EFFASGCMDTNLKIWDIRK-KGCIHTYKGHTRGINTIRF-TPDGRWVVSGGFDNVVKVW 169
+ A+G +DTN+ I+ +++ I H G+N + + TP +VS G D +K W
Sbjct: 553 EDLVATGSLDTNIFIYSVKRPXKIIKALNAHKDGVNNLLWETPST--LVSSGADACIKRW 610
Query: 170 DLT 172
++
Sbjct: 611 NVV 613
Score = 34.7 bits (78), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 60/149 (40%), Gaps = 16/149 (10%)
Query: 30 FLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAF-----DSAEVLVLAGASTGVIKL 84
F+IT G D+K++ + L + PV F DS + + +T I++
Sbjct: 221 FVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADAT--IRV 278
Query: 85 WDLEESKMVRTLTGHKSNC----TAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKG 140
WD+ SK V+ T K V G S +D L +++ + T G
Sbjct: 279 WDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRII-SLSLDGTLNFYELGHDEVLKTISG 337
Query: 141 HTRGINTIRFTPDGRWVVSGGFDNVVKVW 169
H +GI + P ++SG +D + W
Sbjct: 338 HNKGITALTVNP----LISGSYDGRIXEW 362
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 36.2 bits (82), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 57/123 (46%), Gaps = 17/123 (13%)
Query: 64 VAFDSAEVLVLAGASTGVIKLWDLEESKMVRT--LTGHKSNCTAVEFHPFG--------- 112
++ +E + AG G I L+DL+ S+ V+T S A+ + P
Sbjct: 494 ISISPSETYIAAGDVMGKILLYDLQ-SREVKTSRWAFRTSKINAISWKPAEKGANEEEIE 552
Query: 113 -EFFASGCMDTNLKIWDIRK-KGCIHTYKGHTRGINTIRF-TPDGRWVVSGGFDNVVKVW 169
+ A+G +DTN+ I+ +++ I H G+N + + TP +VS G D +K W
Sbjct: 553 EDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST--LVSSGADACIKRW 610
Query: 170 DLT 172
++
Sbjct: 611 NVV 613
Score = 34.3 bits (77), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 60/149 (40%), Gaps = 16/149 (10%)
Query: 30 FLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAF-----DSAEVLVLAGASTGVIKL 84
F+IT G D+K++ + L + PV F DS + + +T I++
Sbjct: 221 FVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADAT--IRV 278
Query: 85 WDLEESKMVRTLTGHKSNC----TAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKG 140
WD+ SK V+ T K V G S +D L +++ + T G
Sbjct: 279 WDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRII-SLSLDGTLNFYELGHDEVLKTISG 337
Query: 141 HTRGINTIRFTPDGRWVVSGGFDNVVKVW 169
H +GI + P ++SG +D + W
Sbjct: 338 HNKGITALTVNP----LISGSYDGRIMEW 362
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 35.4 bits (80), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 44/187 (23%), Positives = 74/187 (39%), Gaps = 28/187 (14%)
Query: 53 SLCGLSSPVDSVAFDSAEV-LVLAGAST-GVIKLWDLEESKM--VRTLTGHKSNCTAVEF 108
+L G PV V + + +LA S G + +W E + + H ++ +V++
Sbjct: 48 TLTGHEGPVWRVDWAHPKFGTILASCSYDGKVXIWKEENGRWSQIAVHAVHSASVNSVQW 107
Query: 109 --HPFGEFFASGCMDTNLKIWDIRKKGCIH--TYKGHTRGINTIRFTP-----DG----- 154
H +G D + + + ++ G H G+N+ + P DG
Sbjct: 108 APHEYGPXLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGT 167
Query: 155 ---RWVVSGGFDNVVKVW----DLTAGKLLHDFKFHEGHIRSIDFHPLEFL---LATGSA 204
R V+GG DN+VK+W D L + H +R + + P L A+ S
Sbjct: 168 KESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYXASVSQ 227
Query: 205 DRTVKFW 211
DRT W
Sbjct: 228 DRTCIIW 234
>pdb|3F3P|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|I Chain I, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|J Chain J, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
Length = 351
Score = 34.3 bits (77), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 42/79 (53%), Gaps = 6/79 (7%)
Query: 140 GHTRGINTIRFTPDGRWVVSGGFDNVVKVW----DLTAGKLLHDFKFHEGHIRSIDFHPL 195
GH ++ + + GR V + D +KV+ D + +L ++ H+ I +ID+
Sbjct: 9 GHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASP 68
Query: 196 EF--LLATGSADRTVKFWD 212
E+ ++A+ S D+TVK W+
Sbjct: 69 EYGRIIASASYDKTVKLWE 87
>pdb|3EWE|A Chain A, Crystal Structure Of The Nup85SEH1 COMPLEX
pdb|3EWE|C Chain C, Crystal Structure Of The Nup85SEH1 COMPLEX
Length = 349
Score = 34.3 bits (77), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 42/79 (53%), Gaps = 6/79 (7%)
Query: 140 GHTRGINTIRFTPDGRWVVSGGFDNVVKVW----DLTAGKLLHDFKFHEGHIRSIDFHPL 195
GH ++ + + GR V + D +KV+ D + +L ++ H+ I +ID+
Sbjct: 7 GHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASP 66
Query: 196 EF--LLATGSADRTVKFWD 212
E+ ++A+ S D+TVK W+
Sbjct: 67 EYGRIIASASYDKTVKLWE 85
>pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3G|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
Length = 351
Score = 34.3 bits (77), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 42/79 (53%), Gaps = 6/79 (7%)
Query: 140 GHTRGINTIRFTPDGRWVVSGGFDNVVKVW----DLTAGKLLHDFKFHEGHIRSIDFHPL 195
GH ++ + + GR V + D +KV+ D + +L ++ H+ I +ID+
Sbjct: 9 GHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASP 68
Query: 196 EF--LLATGSADRTVKFWD 212
E+ ++A+ S D+TVK W+
Sbjct: 69 EYGRIIASASYDKTVKLWE 87
>pdb|1YFQ|A Chain A, High Resolution S. Cerevisiae Bub3 Mitotic Checkpoint
Protein
Length = 342
Score = 34.3 bits (77), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Query: 145 INTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDF-KFHEGHIRSIDFHPLEFLLATGS 203
+N+I F+P +++ + G D ++ W+L K + +F KF+E + I + +L +
Sbjct: 254 VNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACS--DNILCLAT 311
Query: 204 ADRTVK 209
+D T K
Sbjct: 312 SDDTFK 317
Score = 29.6 bits (65), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 11/40 (27%), Positives = 20/40 (50%)
Query: 57 LSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTL 96
L+ PV+S+ F + S G+I W+L+ K ++
Sbjct: 250 LAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNF 289
>pdb|2I3S|A Chain A, Bub3 Complex With Bub1 Glebs Motif
pdb|2I3S|C Chain C, Bub3 Complex With Bub1 Glebs Motif
pdb|2I3S|E Chain E, Bub3 Complex With Bub1 Glebs Motif
Length = 349
Score = 33.9 bits (76), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Query: 145 INTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDF-KFHEGHIRSIDFHPLEFLLATGS 203
+N+I F+P +++ + G D ++ W+L K + +F KF+E + I + +L +
Sbjct: 254 VNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACS--DNILCLAT 311
Query: 204 ADRTVK 209
+D T K
Sbjct: 312 SDDTFK 317
>pdb|2I3T|A Chain A, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
pdb|2I3T|C Chain C, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
pdb|2I3T|E Chain E, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
pdb|2I3T|G Chain G, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
Length = 341
Score = 33.9 bits (76), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Query: 145 INTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDF-KFHEGHIRSIDFHPLEFLLATGS 203
+N+I F+P +++ + G D ++ W+L K + +F KF+E + I + +L +
Sbjct: 254 VNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACS--DNILCLAT 311
Query: 204 ADRTVK 209
+D T K
Sbjct: 312 SDDTFK 317
>pdb|1U4C|A Chain A, Structure Of Spindle Checkpoint Protein Bub3
pdb|1U4C|B Chain B, Structure Of Spindle Checkpoint Protein Bub3
Length = 349
Score = 33.5 bits (75), Expect = 0.61, Method: Composition-based stats.
Identities = 18/66 (27%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Query: 145 INTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDF-KFHEGHIRSIDFHPLEFLLATGS 203
+N+I F+P +++ + G D ++ W+L K + +F KF+E + I + +L +
Sbjct: 254 VNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACS--DNILCLAT 311
Query: 204 ADRTVK 209
+D T K
Sbjct: 312 SDDTFK 317
Score = 30.0 bits (66), Expect = 7.4, Method: Composition-based stats.
Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 2/79 (2%)
Query: 20 CISI-GKKACRFLITGGDD-QKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGA 77
C SI G+ A F GDD +A + L+ PV+S+ F +
Sbjct: 211 CSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAG 270
Query: 78 STGVIKLWDLEESKMVRTL 96
S G+I W+L+ K ++
Sbjct: 271 SDGIISCWNLQTRKKIKNF 289
>pdb|3PQH|A Chain A, Crystal Structure Of The C-Terminal Fragment Of The
Bacteriophage Phi92 Membrane-Piercing Protein Gp138
pdb|3PQH|B Chain B, Crystal Structure Of The C-Terminal Fragment Of The
Bacteriophage Phi92 Membrane-Piercing Protein Gp138
Length = 127
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 132 KGCIHTYKGHTRGINTIRFTPDGRWVVSGGF 162
+G TYKG T +N + TPDGR SGG
Sbjct: 70 QGGTMTYKGGTVNLNGLTITPDGRMTDSGGI 100
>pdb|3PQI|A Chain A, Crystal Structure Of The Bacteriophage Phi92
Membrane-Piercing Protein Gp138
Length = 247
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 132 KGCIHTYKGHTRGINTIRFTPDGRWVVSGGF 162
+G TYKG T +N + TPDGR SGG
Sbjct: 190 QGGTMTYKGGTVNLNGLTITPDGRMTDSGGI 220
>pdb|2QAR|C Chain C, Structure Of The 2tel Crystallization Module Fused To T4
Lysozyme With A Helical Linker.
pdb|2QAR|F Chain F, Structure Of The 2tel Crystallization Module Fused To T4
Lysozyme With A Helical Linker
Length = 163
Score = 31.6 bits (70), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 8/92 (8%)
Query: 473 ESESLNSKKSDLDSAVDPNVKTRFVSSDGARKSCEEKDCHIKTITGEIENIFSPQKPPKQ 532
+S SLN+ KS+LD A+ N + + C++ D ++ I + + + P
Sbjct: 36 KSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFCQDVDAAVRGI------LRNAKLKPVY 89
Query: 533 EDGDKSRDCSKITNSVKFVNGVAVVPGRTRSL 564
+ D R C+ I ++ F G V G T SL
Sbjct: 90 DSLDCVRRCALI--NMVFQMGETGVAGFTNSL 119
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 30.8 bits (68), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 53/122 (43%), Gaps = 8/122 (6%)
Query: 97 TGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKG--CIHTYKGHTRGINTIRFTP-- 152
T H+ + +G A+ D ++KI+D+R G I +GH + + +
Sbjct: 10 TSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPM 69
Query: 153 DGRWVVSGGFDNVVKVWDLTAGKL--LHDFKFHEGHIRSIDFHPLEF--LLATGSADRTV 208
G + S +D V +W G H+ H+ + S+ + P ++ +LA GS+D +
Sbjct: 70 YGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAI 129
Query: 209 KF 210
Sbjct: 130 SL 131
>pdb|1L24|A Chain A, Enhanced Protein Thermostability From Site-directed
Mutations That Decrease The Entropy Of Unfolding
Length = 164
Score = 30.0 bits (66), Expect = 7.4, Method: Composition-based stats.
Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 8/92 (8%)
Query: 473 ESESLNSKKSDLDSAVDPNVKTRFVSSDGARKSCEEKDCHIKTITGEIENIFSPQKPPKQ 532
+S SLN+ KS+LD A+ N + + ++ D ++ I + +P+ P
Sbjct: 35 KSPSLNAAKSELDKAIGRNCNGVITKDEAEKLFNQDVDAAVRGI------LRNPKLKPVY 88
Query: 533 EDGDKSRDCSKITNSVKFVNGVAVVPGRTRSL 564
+ D R C+ I ++ F G V G T SL
Sbjct: 89 DSLDAVRRCALI--NMVFQMGETGVAGFTNSL 118
>pdb|3LDV|A Chain A, 1.77 Angstrom Resolution Crystal Structure Of Orotidine
5'- Phosphate Decarboxylase From Vibrio Cholerae O1
Biovar Eltor Str. N16961
pdb|3LDV|B Chain B, 1.77 Angstrom Resolution Crystal Structure Of Orotidine
5'- Phosphate Decarboxylase From Vibrio Cholerae O1
Biovar Eltor Str. N16961
pdb|3UWQ|A Chain A, 1.80 Angstrom Resolution Crystal Structure Of Orotidine
5'-Phosphate Decarboxylase From Vibrio Cholerae O1
Biovar Eltor Str. N16961 In Complex With
Uridine-5'-Monophosphate (Ump)
pdb|3UWQ|B Chain B, 1.80 Angstrom Resolution Crystal Structure Of Orotidine
5'-Phosphate Decarboxylase From Vibrio Cholerae O1
Biovar Eltor Str. N16961 In Complex With
Uridine-5'-Monophosphate (Ump)
Length = 255
Score = 29.6 bits (65), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 3/83 (3%)
Query: 596 QAADVTPQTTLSSNEDHVANVTSQTRLNGNEYQAATAPQQTRLSSNID-PVANVTPQTLP 654
++AD+ LS+ +DHV + + T+ G + +A + + L ++ VTP P
Sbjct: 147 ESADLQGIGILSAPQDHVLRLATLTKNAGLDGVVCSAQEASLLKQHLGREFKLVTPGIRP 206
Query: 655 SGNE--DQAANVTPQTRPSSNED 675
+G+E DQ +TP +S D
Sbjct: 207 AGSEQGDQRRIMTPAQAIASGSD 229
>pdb|3C8Q|A Chain A, Contribution Of All 20 Amino Acids At Site 96 To The
Stability And Structure Of T4 Lysozyme
Length = 164
Score = 29.6 bits (65), Expect = 9.4, Method: Composition-based stats.
Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 8/92 (8%)
Query: 473 ESESLNSKKSDLDSAVDPNVKTRFVSSDGARKSCEEKDCHIKTITGEIENIFSPQKPPKQ 532
+S SLN+ KS+LD A+ N + + ++ D ++ I + + + P
Sbjct: 35 KSPSLNAAKSELDKAIGRNCNGVITKDEAEKLFNQDVDAAVRGI------LRNAKLKPVY 88
Query: 533 EDGDKSRDCSKITNSVKFVNGVAVVPGRTRSL 564
+ D RDC+ I ++ F G V G T SL
Sbjct: 89 DSLDAVRDCALI--NMVFQMGETGVAGFTNSL 118
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.129 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,815,355
Number of Sequences: 62578
Number of extensions: 1281390
Number of successful extensions: 3512
Number of sequences better than 100.0: 121
Number of HSP's better than 100.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 41
Number of HSP's that attempted gapping in prelim test: 2485
Number of HSP's gapped (non-prelim): 443
length of query: 1074
length of database: 14,973,337
effective HSP length: 109
effective length of query: 965
effective length of database: 8,152,335
effective search space: 7867003275
effective search space used: 7867003275
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 57 (26.6 bits)