BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001462
(1074 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8H0T9|KTNB1_ARATH Katanin p80 WD40 repeat-containing subunit B1 homolog
OS=Arabidopsis thaliana GN=At5g23430 PE=2 SV=3
Length = 837
Score = 498 bits (1281), Expect = e-139, Method: Compositional matrix adjust.
Identities = 216/304 (71%), Positives = 260/304 (85%)
Query: 3 KRGYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVD 62
KR YKLQEFVAHSA VNC+ IG+K+ R L+TGG+D KVNLWAIGKP A++SL G SS +D
Sbjct: 4 KRAYKLQEFVAHSAAVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLYGHSSGID 63
Query: 63 SVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDT 122
SV FD++EVLV AGA++G IKLWDLEE+K+VRTLTGH+SNC +V+FHPFGEFFASG +DT
Sbjct: 64 SVTFDASEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDT 123
Query: 123 NLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKF 182
NLKIWDIRKKGCIHTYKGHTRG+N +RFTPDGRWVVSGG DN+VKVWDLTAGKLL +FK
Sbjct: 124 NLKIWDIRKKGCIHTYKGHTRGVNVLRFTPDGRWVVSGGEDNIVKVWDLTAGKLLTEFKS 183
Query: 183 HEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLF 242
HEG I+S+DFHP EFLLATGSADRTVKFWDLETFELIGS PE GV ++F+PDG+T+
Sbjct: 184 HEGQIQSLDFHPHEFLLATGSADRTVKFWDLETFELIGSGGPETAGVRCLSFNPDGKTVL 243
Query: 243 SGFDDNLKVYSWEPVICHDSVDMGWSTLGDLCINDGKLLGCSFYRNSVGIWVADVSHVEP 302
G ++LK++SWEP+ CHD VD+GWS L D+ +++GKLLGCS+ ++ VG+WV D+S EP
Sbjct: 244 CGLQESLKIFSWEPIRCHDGVDVGWSRLSDMNVHEGKLLGCSYNQSCVGVWVVDLSRTEP 303
Query: 303 YGVG 306
G
Sbjct: 304 CMAG 307
Score = 159 bits (402), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 93/182 (51%), Positives = 131/182 (71%), Gaps = 2/182 (1%)
Query: 892 PQISGRDTPVANEGEAVESLMETHDIFISTLRSRLTKLQVVRHFWERNDIKGGINALRKL 951
P G D+P +E VE +M H+ F+S+++SRL KLQVVR +WERND+K I ++ K+
Sbjct: 655 PVEQGIDSP--SEENIVEDIMGKHNQFVSSMQSRLAKLQVVRRYWERNDVKNSIGSIEKM 712
Query: 952 PDHSVQADVMSVLMEKMEILNLDLFLCLLPMLMGLLDSKMERHASISLEMLLKLVVVFGP 1011
D++V ADV+ ++ E+ EIL LD LLP+L LL S M++H S+SL++LLKLV ++G
Sbjct: 713 ADNAVTADVLGIITERNEILTLDNCTSLLPLLTALLGSGMDQHLSVSLDLLLKLVRLYGS 772
Query: 1012 MIHSTLSAPPAVGVDLHAEQRRECCNRCFMQLQKIQKILPILERRGGLLAKCAHELNLVL 1071
I+S+LSAP +VGVD+ AEQR E +RCF++L+K++ LP L RRGGL+AK ELNL
Sbjct: 773 PIYSSLSAPASVGVDIEAEQRIERYSRCFVELEKVKACLPSLARRGGLVAKSVLELNLAF 832
Query: 1072 QE 1073
QE
Sbjct: 833 QE 834
>sp|O61585|KTNB1_STRPU Katanin p80 WD40 repeat-containing subunit B1 OS=Strongylocentrotus
purpuratus GN=KATNB1 PE=1 SV=1
Length = 690
Score = 380 bits (975), Expect = e-104, Method: Compositional matrix adjust.
Identities = 163/308 (52%), Positives = 230/308 (74%), Gaps = 1/308 (0%)
Query: 3 KRGYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVD 62
KR +KLQE VAHS+NVNC+++G + R ++TGG+D+KVNLWA+GK ++SL G +SPVD
Sbjct: 4 KRAWKLQELVAHSSNVNCLALGPMSGRVMVTGGEDKKVNLWAVGKQNCIISLSGHTSPVD 63
Query: 63 SVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDT 122
SV F+S+E LV+AG+ +G +K++DLE +K+VRTLTGH+++ ++FHPFGEF ASG DT
Sbjct: 64 SVKFNSSEELVVAGSQSGTMKIYDLEPAKIVRTLTGHRNSIRCMDFHPFGEFVASGSTDT 123
Query: 123 NLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKF 182
N+K+WD+R+KGCI+TYKGH+ +N I+F+PDG+W+V+ D +K+WDLT GKL +FK
Sbjct: 124 NVKLWDVRRKGCIYTYKGHSDQVNMIKFSPDGKWLVTASEDTTIKLWDLTMGKLFQEFKN 183
Query: 183 HEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLF 242
H G + I+FHP EFLLA+GS+DRTV+FWDLETF+L+ ST P + V +I+FHPDG LF
Sbjct: 184 HTGGVTGIEFHPNEFLLASGSSDRTVQFWDLETFQLVSSTSPGASAVRSISFHPDGSYLF 243
Query: 243 SGFDDNLKVYSWEPVICHDSVDMGWSTLGDLCINDGKLLGCSFYRNSVGIWVADVSHVEP 302
D L + WEP+ C D+ +GW + D I +L+G SF +V ++VAD+S +
Sbjct: 244 CSSQDMLHAFGWEPIRCFDTFSVGWGKVADTVIASTQLIGASFNATNVSVYVADLSRMST 303
Query: 303 YGVGAPEP 310
G+ A EP
Sbjct: 304 TGI-AQEP 310
Score = 90.9 bits (224), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 91/182 (50%), Gaps = 1/182 (0%)
Query: 892 PQISGRDTPVANEGEAVESLMETHDIFISTLRSRLTKLQVVRHFWERNDIKGGINALRKL 951
P+++ + ++ E +E L + HD L SR L VVR W D K + ++ +
Sbjct: 508 PRVNAPASRKQSDSERIEGLRKGHDSMCQVLSSRHRNLDVVRAIWTAGDAKTSVESVVNM 567
Query: 952 PDHSVQADVMSVLMEKMEILNLDLFLCLLPMLMGLLDSKMERHASISLEMLLKLVVVFGP 1011
D ++ D++++++ K + NLD+ + +LP L LL SK E + S L ++ F
Sbjct: 568 KDQAILVDILNIMLLKKSLWNLDMCVVVLPRLKELLSSKYENYVHTSCACLKLILKNFTS 627
Query: 1012 MIHSTLSAPPAVGVDLHAEQRRECCNRCFMQLQKIQKILPILERRGGLLAKCAHELNLVL 1071
+ + + PP+ G+D+ E+R C++C+ L + + + G L EL+L+L
Sbjct: 628 LFNQNIKCPPS-GIDITREERYNKCSKCYSYLIATRGYVEEKQHVSGKLGSSFRELHLLL 686
Query: 1072 QE 1073
+
Sbjct: 687 DQ 688
>sp|Q9BVA0|KTNB1_HUMAN Katanin p80 WD40 repeat-containing subunit B1 OS=Homo sapiens
GN=KATNB1 PE=1 SV=1
Length = 655
Score = 347 bits (890), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 148/312 (47%), Positives = 224/312 (71%)
Query: 1 MAKRGYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSP 60
+ K +KLQE VAH++NV+ + +GK + R L TGGDD +VNLW+I KP +MSL G +SP
Sbjct: 6 VTKTAWKLQEIVAHASNVSSLVLGKASGRLLATGGDDCRVNLWSINKPNCIMSLTGHTSP 65
Query: 61 VDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCM 120
V+SV ++ E L++AG+ +G I++WDLE +K++RTL GHK+N +++FHP+GEF ASG
Sbjct: 66 VESVRLNTPEELIVAGSQSGSIRVWDLEAAKILRTLMGHKANICSLDFHPYGEFVASGSQ 125
Query: 121 DTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDF 180
DTN+K+WDIR+KGC+ Y+GH++ + +RF+PDG+W+ S D+ VK+WDLTAGK++ +F
Sbjct: 126 DTNIKLWDIRRKGCVFRYRGHSQAVRCLRFSPDGKWLASAADDHTVKLWDLTAGKMMSEF 185
Query: 181 KFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRT 240
H G + ++FHP E+LLA+GS+DRT++FWDLE F+++ E V ++ F+PDG
Sbjct: 186 PGHTGPVNVVEFHPNEYLLASGSSDRTIRFWDLEKFQVVSCIEGEPGPVRSVLFNPDGCC 245
Query: 241 LFSGFDDNLKVYSWEPVICHDSVDMGWSTLGDLCINDGKLLGCSFYRNSVGIWVADVSHV 300
L+SG D+L+VY WEP C D V + W + DL I + +L+G +F +++V +V D++ V
Sbjct: 246 LYSGCQDSLRVYGWEPERCFDVVLVNWGKVADLAICNDQLIGVAFSQSNVSSYVVDLTRV 305
Query: 301 EPYGVGAPEPDQ 312
G A +P Q
Sbjct: 306 TRTGTVARDPVQ 317
Score = 90.9 bits (224), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 59/207 (28%), Positives = 95/207 (45%), Gaps = 20/207 (9%)
Query: 885 TSTPKGEPQI--SGRDTPVANEG------------------EAVESLMETHDIFISTLRS 924
T PK EP I + R+ P+ + +A+ + + HD L S
Sbjct: 445 TPAPKAEPAIIPATRNEPIGLKASDFLPAVKIPQQAELVDEDAMSQIRKGHDTMCVVLTS 504
Query: 925 RLTKLQVVRHFWERNDIKGGINALRKLPDHSVQADVMSVLMEKMEILNLDLFLCLLPMLM 984
R L VR W DIK +++ + D SV D+++++ +K + LDL +LP +
Sbjct: 505 RHKNLDTVRAVWTMGDIKTSVDSAVAINDLSVVVDLLNIVNQKASLWKLDLCTTVLPQIE 564
Query: 985 GLLDSKMERHASISLEMLLKLVVVFGPMIHSTLSAPPAVGVDLHAEQRRECCNRCFMQLQ 1044
LL SK E + L ++ F P+I L+APP+VGVD+ E+R C C+ QL+
Sbjct: 565 KLLQSKYESYVQTGCTSLKLILQRFLPLITDMLAAPPSVGVDISREERLHKCRLCYKQLK 624
Query: 1045 KIQKILPILERRGGLLAKCAHELNLVL 1071
I ++ G EL+L++
Sbjct: 625 SISGLVKSKSGLSGRHGSTFRELHLLM 651
>sp|Q6NVM2|KTNB1_XENTR Katanin p80 WD40 repeat-containing subunit B1 OS=Xenopus tropicalis
GN=katnb1 PE=2 SV=1
Length = 655
Score = 347 bits (889), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 149/308 (48%), Positives = 222/308 (72%)
Query: 3 KRGYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVD 62
K +KLQE VAH ++V+ + +GK + R + TGGDD +VNLW++ KP +MSL G ++PV+
Sbjct: 8 KTTWKLQEIVAHGSSVSSVVLGKSSGRLVATGGDDCRVNLWSVNKPNCIMSLTGHTTPVE 67
Query: 63 SVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDT 122
SV F++AE L++AG+ +G +++WDLE +K++RTL GHK+N +++FHP+G+F ASG +DT
Sbjct: 68 SVRFNNAEELIVAGSQSGSLRVWDLEAAKILRTLMGHKANVCSLDFHPYGDFVASGSLDT 127
Query: 123 NLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKF 182
N+K+WD+R+KGC+ YKGHT+ + +RF+PDG+W+ S D+ VK+WDLTAGK++ +
Sbjct: 128 NIKLWDVRRKGCVFRYKGHTQAVRCLRFSPDGKWLASASDDHSVKLWDLTAGKMMAELSE 187
Query: 183 HEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLF 242
H+G + I+FHP E+LLA+GSADRTV+FWDLE F+LIG T E V AI F DG +F
Sbjct: 188 HKGPVNIIEFHPNEYLLASGSADRTVRFWDLEKFQLIGCTEGETIPVRAILFSSDGGCIF 247
Query: 243 SGFDDNLKVYSWEPVICHDSVDMGWSTLGDLCINDGKLLGCSFYRNSVGIWVADVSHVEP 302
G D L+VY WEP C D+V +GW + DL I + +L+G S ++++ +V D++ V+
Sbjct: 248 CGGRDALRVYGWEPDQCFDTVPVGWGKVCDLAICNKQLIGVSSAQSTISSFVVDLTRVKM 307
Query: 303 YGVGAPEP 310
G P
Sbjct: 308 TGCAPQGP 315
Score = 100 bits (249), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 56/169 (33%), Positives = 91/169 (53%), Gaps = 6/169 (3%)
Query: 906 EAVESLMETHDIFISTLRSRLTKLQVVRHFWERNDIKGGINALRKLPDHSVQADVMSVLM 965
EAV + + HD L SR+ L VR W DIK I++ + D SV D+++++
Sbjct: 486 EAVSQIRKGHDTMCMVLTSRMRNLDTVRAVWSSGDIKTSIDSAVAINDLSVVVDLLNIIN 545
Query: 966 EKMEILNLDLFLCLLPMLMGLLDSKMERH---ASISLEMLLKLVVVFGPMIHSTLSAPPA 1022
+K + LDL L +LP + +L SK E + ISL+++L+ F P+I L+APP+
Sbjct: 546 QKASLWKLDLCLTVLPQIEKMLQSKYESYVQTGCISLKLILQR---FLPLITDILAAPPS 602
Query: 1023 VGVDLHAEQRRECCNRCFMQLQKIQKILPILERRGGLLAKCAHELNLVL 1071
VGVD+ E+R C C+ QL+ + ++ + G EL+L++
Sbjct: 603 VGVDISREERLSKCKLCYKQLRILSPLVKSKASQSGRYGSAFRELHLLM 651
>sp|Q4V7Y7|KTNB1_XENLA Katanin p80 WD40 repeat-containing subunit B1 OS=Xenopus laevis
GN=katnb1 PE=1 SV=1
Length = 655
Score = 345 bits (885), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 148/322 (45%), Positives = 228/322 (70%), Gaps = 3/322 (0%)
Query: 3 KRGYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVD 62
K +KLQE VAH +V+ + +G+ + R + TGGDD +V+LW++ KP +MSL G ++PV+
Sbjct: 8 KTTWKLQEIVAHGCSVSSVVLGRSSGRLVATGGDDCRVHLWSVNKPNCIMSLTGHTTPVE 67
Query: 63 SVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDT 122
SV F+++E L++AG+ +G +++WDLE +K++RTL GHK+N ++++FHP+GEF ASG +DT
Sbjct: 68 SVRFNNSEELIVAGSQSGSLRIWDLEAAKILRTLMGHKANVSSLDFHPYGEFVASGSLDT 127
Query: 123 NLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKF 182
N+K+WD+R+KGC+ YKGHT+ + +RF+PDG+W+ S D+ VK+WDLTAGK++ +
Sbjct: 128 NIKLWDVRRKGCVFRYKGHTQAVRCLRFSPDGKWLASASDDHSVKLWDLTAGKMMAELSE 187
Query: 183 HEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLF 242
H+G + I+FHP E+LLA+GSADRTV+FWDLE F+L+G T E V AI F DG +F
Sbjct: 188 HKGPVNIIEFHPNEYLLASGSADRTVRFWDLEKFQLVGCTEGETIPVRAILFSNDGGCIF 247
Query: 243 SGFDDNLKVYSWEPVICHDSVDMGWSTLGDLCINDGKLLGCSFYRNSVGIWVADVSHVEP 302
G D+L+VY WEP C D+V +GW + DL I + +L+G S ++++ +V D++ V+
Sbjct: 248 CGGKDSLRVYGWEPDQCFDTVPVGWGKVSDLAICNNQLIGVSSAQSNISSFVVDLTRVKM 307
Query: 303 YGVGAPEPDQSICTEVKFNPPG 324
G P + E+ + P
Sbjct: 308 TGCA---PQGPVPAEIPISQPA 326
Score = 99.8 bits (247), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 91/169 (53%), Gaps = 6/169 (3%)
Query: 906 EAVESLMETHDIFISTLRSRLTKLQVVRHFWERNDIKGGINALRKLPDHSVQADVMSVLM 965
EAV + + HD L SR+ L VR W DIK I++ + D SV D+++++
Sbjct: 486 EAVSQIRKGHDTMCMVLTSRMRNLDTVRAVWSSGDIKTSIDSAVAINDLSVVVDLLNIIN 545
Query: 966 EKMEILNLDLFLCLLPMLMGLLDSKMERH---ASISLEMLLKLVVVFGPMIHSTLSAPPA 1022
+K + LDL + +LP + +L SK E + ISL+++L+ F P+I L+APP+
Sbjct: 546 QKASLWKLDLCMTVLPQIEKMLQSKYESYVQTGCISLKLILQR---FLPLITDILAAPPS 602
Query: 1023 VGVDLHAEQRRECCNRCFMQLQKIQKILPILERRGGLLAKCAHELNLVL 1071
VGVD+ E+R C C+ QL+ + ++ + G EL+L++
Sbjct: 603 VGVDISREERLSKCKLCYKQLRILSPLVKSKASQSGRYGSAFRELHLLM 651
>sp|Q5ZIU8|KTNB1_CHICK Katanin p80 WD40 repeat-containing subunit B1 OS=Gallus gallus
GN=KATNB1 PE=2 SV=2
Length = 657
Score = 343 bits (879), Expect = 6e-93, Method: Compositional matrix adjust.
Identities = 143/304 (47%), Positives = 215/304 (70%)
Query: 1 MAKRGYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSP 60
+ K +KLQE VAHS+NV+ + +GK R L TGGDD +VN+W++ KP +MSL G ++P
Sbjct: 6 VTKTAWKLQEIVAHSSNVSSLVLGKSTGRLLATGGDDCRVNVWSVNKPNCVMSLTGHTTP 65
Query: 61 VDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCM 120
++S+ + E L++AG+ +G I++WDLE +K++RTL GHK+N +++FHP+G F ASG +
Sbjct: 66 IESLQISAKEELIVAGSQSGSIRVWDLEAAKILRTLLGHKANICSLDFHPYGSFVASGSL 125
Query: 121 DTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDF 180
DT++K+WD+R+KGCI YK HT+ + +RF+PDG+W+ S D+ VK+WDLTAGK++ +F
Sbjct: 126 DTDIKLWDVRRKGCIFKYKSHTQAVRCLRFSPDGKWLASAADDHTVKLWDLTAGKVMFEF 185
Query: 181 KFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRT 240
H G + ++FHP E+LLA+GS+DRT++FWDLE F ++ E T V I F+PDG
Sbjct: 186 TGHSGPVNVVEFHPSEYLLASGSSDRTIRFWDLEKFHVVSCIEEEATPVRCILFNPDGCC 245
Query: 241 LFSGFDDNLKVYSWEPVICHDSVDMGWSTLGDLCINDGKLLGCSFYRNSVGIWVADVSHV 300
L+ GF D+L+VY WEP C D V + W + DL + +L+G SF +++V +V D+S V
Sbjct: 246 LYGGFQDSLRVYGWEPERCFDVVVVNWGKVADLSVCHNQLIGVSFAQSTVSSFVVDLSRV 305
Query: 301 EPYG 304
G
Sbjct: 306 TKSG 309
Score = 85.1 bits (209), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 92/207 (44%), Gaps = 20/207 (9%)
Query: 885 TSTPKGEPQI--SGRDTPVA------------------NEGEAVESLMETHDIFISTLRS 924
T P+ EP + + R+ P+ + E + + + H L S
Sbjct: 447 TPMPRAEPSVIPAARNEPIGLKASDFLPALKNQSQAELTDEEIMSQIRKGHKTVCMVLTS 506
Query: 925 RLTKLQVVRHFWERNDIKGGINALRKLPDHSVQADVMSVLMEKMEILNLDLFLCLLPMLM 984
R L VR W +D+K ++A D SV D+++++ + + LDL +LP +
Sbjct: 507 RHKNLDTVRAVWSTSDMKNSVDAAVATNDLSVVVDLLNIVNQTASLWKLDLCTVVLPQIE 566
Query: 985 GLLDSKMERHASISLEMLLKLVVVFGPMIHSTLSAPPAVGVDLHAEQRRECCNRCFMQLQ 1044
LL SK E + L ++ F P+I L+APP+VGVD+ E+R C C+ QL+
Sbjct: 567 KLLQSKYESYVQTGCTSLKLILQRFLPLITDILAAPPSVGVDITREERLHKCRLCYKQLK 626
Query: 1045 KIQKILPILERRGGLLAKCAHELNLVL 1071
I I+ G EL+L++
Sbjct: 627 NISNIVKNKSGLSGRHGSAFRELHLLM 653
>sp|Q8BG40|KTNB1_MOUSE Katanin p80 WD40 repeat-containing subunit B1 OS=Mus musculus
GN=Katnb1 PE=1 SV=1
Length = 658
Score = 342 bits (876), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 143/297 (48%), Positives = 217/297 (73%)
Query: 1 MAKRGYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSP 60
+ K +KLQE VAH++NV+ + +GK + R L TGGDD +VNLW+I KP +MSL G +SP
Sbjct: 6 VTKTAWKLQEIVAHASNVSSLVLGKASGRLLATGGDDCRVNLWSINKPNCIMSLTGHTSP 65
Query: 61 VDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCM 120
V+SV ++ E L++AG+ +G I++WDLE +K++RTL GHK+N +++FHP+GEF ASG
Sbjct: 66 VESVRLNTPEELIVAGSQSGSIRVWDLEAAKILRTLMGHKANICSLDFHPYGEFVASGSQ 125
Query: 121 DTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDF 180
DTN+K+WDIR+KGC+ Y+GH++ + +RF+PDG+W+ S D+ VK+WDLTAGK++ +F
Sbjct: 126 DTNIKLWDIRRKGCVFRYRGHSQAVRCLRFSPDGKWLASAADDHTVKLWDLTAGKMMSEF 185
Query: 181 KFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRT 240
H G + ++FHP E+LLA+GS+DRT++FWDLE F+++ E V ++ F+PDG
Sbjct: 186 PGHTGPVNVVEFHPNEYLLASGSSDRTIRFWDLEKFQVVSCIEGEPGPVRSVLFNPDGCC 245
Query: 241 LFSGFDDNLKVYSWEPVICHDSVDMGWSTLGDLCINDGKLLGCSFYRNSVGIWVADV 297
L+SG D+L+VY WEP C D V + W + DL I + +L+G +F +++V +V D+
Sbjct: 246 LYSGCQDSLRVYGWEPERCFDVVLVNWGKVADLAICNDQLIGVAFSQSNVSSYVVDL 302
Score = 95.1 bits (235), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 61/207 (29%), Positives = 96/207 (46%), Gaps = 20/207 (9%)
Query: 885 TSTPKGEPQI--SGRDTPVANEG------------------EAVESLMETHDIFISTLRS 924
T PKGEP I + R+ P+ + +A+ + + HD L S
Sbjct: 448 TPAPKGEPDIIPATRNEPIGLKASDFLPAVKVPQQAELVDEDAMSQIRKGHDTMFVVLTS 507
Query: 925 RLTKLQVVRHFWERNDIKGGINALRKLPDHSVQADVMSVLMEKMEILNLDLFLCLLPMLM 984
R L VR W DIK +++ + D SV D+++++ +K + LDL +LP +
Sbjct: 508 RHKNLDTVRAVWTTGDIKTSVDSAVAINDLSVVVDLLNIVNQKASLWKLDLCTTVLPQIE 567
Query: 985 GLLDSKMERHASISLEMLLKLVVVFGPMIHSTLSAPPAVGVDLHAEQRRECCNRCFMQLQ 1044
LL SK E + L ++ F P+I L+APP+VGVD+ E+R C CF QL+
Sbjct: 568 KLLQSKYESYVQTGCTSLKLILQRFLPLITDILAAPPSVGVDISREERLHKCRLCFKQLK 627
Query: 1045 KIQKILPILERRGGLLAKCAHELNLVL 1071
I ++ G EL+L++
Sbjct: 628 SISGLVKSKSGLSGRHGSAFRELHLLM 654
>sp|Q7ZUV2|KTNB1_DANRE Katanin p80 WD40 repeat-containing subunit B1 OS=Danio rerio
GN=katnb1 PE=2 SV=1
Length = 694
Score = 335 bits (858), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 140/299 (46%), Positives = 214/299 (71%)
Query: 6 YKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVA 65
+KLQE VAHS+NV+ + +GK + R L TGG+D +VN+WA+ KP +MSL G +S V +
Sbjct: 11 WKLQEIVAHSSNVSSLVLGKSSGRLLATGGEDCRVNIWAVSKPNCIMSLTGHTSAVGCIQ 70
Query: 66 FDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLK 125
F+S+E V+AG+ +G ++LWDLE +K++RTL GHK++ ++++FHP GE+ ASG +D+N+K
Sbjct: 71 FNSSEERVVAGSLSGSLRLWDLEAAKILRTLMGHKASISSLDFHPMGEYLASGSVDSNIK 130
Query: 126 IWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEG 185
+WD+R+KGC+ YKGHT+ + + F+PDG+W+ S D+ VK+WDL AGK++ +F H
Sbjct: 131 LWDVRRKGCVFRYKGHTQAVRCLAFSPDGKWLASASDDSTVKLWDLIAGKMITEFTSHTS 190
Query: 186 HIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGF 245
+ + FHP E+LLA+GSADRTVK WDLE F +IGS+ E V ++ F+PDG L+SG
Sbjct: 191 AVNVVQFHPNEYLLASGSADRTVKLWDLEKFNMIGSSEGETGVVRSVLFNPDGSCLYSGS 250
Query: 246 DDNLKVYSWEPVICHDSVDMGWSTLGDLCINDGKLLGCSFYRNSVGIWVADVSHVEPYG 304
++ L+VY WEP C D V +GW + DL I++ +++ S+ +V +V D++ V+ G
Sbjct: 251 ENTLRVYGWEPDRCFDVVHVGWGKVSDLAISNNQMIAVSYSHTNVSWYVVDLNRVKKSG 309
Score = 94.7 bits (234), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 89/169 (52%), Gaps = 6/169 (3%)
Query: 906 EAVESLMETHDIFISTLRSRLTKLQVVRHFWERNDIKGGINALRKLPDHSVQADVMSVLM 965
EA+ + + HD L SR L VR W D+K +++ + D S+ DV++++
Sbjct: 524 EALAQIRKGHDTMCVMLSSRSKNLDSVRSVWASGDVKTSLDSAVSMNDLSIVVDVLNIIN 583
Query: 966 EKMEILNLDLFLCLLPMLMGLLDSKMERH---ASISLEMLLKLVVVFGPMIHSTLSAPPA 1022
K + LDL +LP + LL S+ E + +SL+++LK F P+I TL+APP+
Sbjct: 584 LKPSLWKLDLCTSILPQIEELLQSRYESYVQTGCMSLKLILKR---FWPLISDTLNAPPS 640
Query: 1023 VGVDLHAEQRRECCNRCFMQLQKIQKILPILERRGGLLAKCAHELNLVL 1071
VGVD+ E+R + C C+ QL+ + ++ + G EL L++
Sbjct: 641 VGVDITREERHQKCKACYKQLKNLSNVVKNRAEQVGRHGSTFRELQLLM 689
>sp|Q8YRI1|YY46_NOSS1 Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp.
(strain PCC 7120 / UTEX 2576) GN=alr3466 PE=4 SV=1
Length = 1526
Score = 161 bits (407), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 94/290 (32%), Positives = 152/290 (52%), Gaps = 6/290 (2%)
Query: 6 YKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVA 65
Y LQ H+ VN ++ L +G DQ V LW I L L G +S V+SV
Sbjct: 1152 YTLQ---GHTNWVNAVAFSPDGAT-LASGSGDQTVRLWDISSSKCLYILQGHTSWVNSVV 1207
Query: 66 FDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLK 125
F+ + +G+S ++LW++ SK + T GH S +V F+P G ASG D ++
Sbjct: 1208 FNPDGSTLASGSSDQTVRLWEINSSKCLCTFQGHTSWVNSVVFNPDGSMLASGSSDKTVR 1267
Query: 126 IWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEG 185
+WDI C+HT++GHT +N++ F PDG + SG D V++W++++ K LH F+ H
Sbjct: 1268 LWDISSSKCLHTFQGHTNWVNSVAFNPDGSMLASGSGDQTVRLWEISSSKCLHTFQGHTS 1327
Query: 186 HIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGF 245
+ S+ F P +LA+GS D+TV+ W + + E + + V ++ F PDG L SG
Sbjct: 1328 WVSSVTFSPDGTMLASGSDDQTVRLWSISSGECLYTFLGHTNWVGSVIFSPDGAILASGS 1387
Query: 246 -DDNLKVYSWEPVICHDSVDMGWSTLGDLCIN-DGKLLGCSFYRNSVGIW 293
D ++++S C ++ + +G + + DG LL +V +W
Sbjct: 1388 GDQTVRLWSISSGKCLYTLQGHNNWVGSIVFSPDGTLLASGSDDQTVRLW 1437
Score = 160 bits (404), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 78/217 (35%), Positives = 126/217 (58%)
Query: 31 LITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEES 90
L G DQ V LW I L +L G ++ V++VAF + +G+ ++LWD+ S
Sbjct: 1131 LANGSSDQIVRLWDISSKKCLYTLQGHTNWVNAVAFSPDGATLASGSGDQTVRLWDISSS 1190
Query: 91 KMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRF 150
K + L GH S +V F+P G ASG D +++W+I C+ T++GHT +N++ F
Sbjct: 1191 KCLYILQGHTSWVNSVVFNPDGSTLASGSSDQTVRLWEINSSKCLCTFQGHTSWVNSVVF 1250
Query: 151 TPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKF 210
PDG + SG D V++WD+++ K LH F+ H + S+ F+P +LA+GS D+TV+
Sbjct: 1251 NPDGSMLASGSSDKTVRLWDISSSKCLHTFQGHTNWVNSVAFNPDGSMLASGSGDQTVRL 1310
Query: 211 WDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGFDD 247
W++ + + + + + + V ++TF PDG L SG DD
Sbjct: 1311 WEISSSKCLHTFQGHTSWVSSVTFSPDGTMLASGSDD 1347
Score = 158 bits (400), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 81/225 (36%), Positives = 127/225 (56%), Gaps = 1/225 (0%)
Query: 31 LITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEES 90
L +GGDDQ V LW I L +L G +S V + F V + G+S +++LWD+
Sbjct: 1089 LASGGDDQIVRLWDISSGNCLYTLQGYTSWVRFLVFSPNGVTLANGSSDQIVRLWDISSK 1148
Query: 91 KMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRF 150
K + TL GH + AV F P G ASG D +++WDI C++ +GHT +N++ F
Sbjct: 1149 KCLYTLQGHTNWVNAVAFSPDGATLASGSGDQTVRLWDISSSKCLYILQGHTSWVNSVVF 1208
Query: 151 TPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKF 210
PDG + SG D V++W++ + K L F+ H + S+ F+P +LA+GS+D+TV+
Sbjct: 1209 NPDGSTLASGSSDQTVRLWEINSSKCLCTFQGHTSWVNSVVFNPDGSMLASGSSDKTVRL 1268
Query: 211 WDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGFDDNLKVYSWE 255
WD+ + + + + + V+++ F+PDG L SG D V WE
Sbjct: 1269 WDISSSKCLHTFQGHTNWVNSVAFNPDGSMLASGSGDQ-TVRLWE 1312
Score = 152 bits (383), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 79/240 (32%), Positives = 130/240 (54%), Gaps = 1/240 (0%)
Query: 8 LQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFD 67
L F H++ VN + L +G D+ V LW I L + G ++ V+SVAF+
Sbjct: 1235 LCTFQGHTSWVNSVVFNPDG-SMLASGSSDKTVRLWDISSSKCLHTFQGHTNWVNSVAFN 1293
Query: 68 SAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIW 127
++ +G+ ++LW++ SK + T GH S ++V F P G ASG D +++W
Sbjct: 1294 PDGSMLASGSGDQTVRLWEISSSKCLHTFQGHTSWVSSVTFSPDGTMLASGSDDQTVRLW 1353
Query: 128 DIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHI 187
I C++T+ GHT + ++ F+PDG + SG D V++W +++GK L+ + H +
Sbjct: 1354 SISSGECLYTFLGHTNWVGSVIFSPDGAILASGSGDQTVRLWSISSGKCLYTLQGHNNWV 1413
Query: 188 RSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGFDD 247
SI F P LLA+GS D+TV+ W++ + E + + + V ++ F DG L SG DD
Sbjct: 1414 GSIVFSPDGTLLASGSDDQTVRLWNISSGECLYTLHGHINSVRSVAFSSDGLILASGSDD 1473
Score = 151 bits (381), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 77/237 (32%), Positives = 130/237 (54%), Gaps = 1/237 (0%)
Query: 11 FVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAE 70
F H++ V + L +G DDQ V LW I L +L G +S V SV F
Sbjct: 1028 FQGHTSCVRSVVFSSDGA-MLASGSDDQTVRLWDISSGNCLYTLQGHTSCVRSVVFSPDG 1086
Query: 71 VLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIR 130
++ +G +++LWD+ + TL G+ S + F P G A+G D +++WDI
Sbjct: 1087 AMLASGGDDQIVRLWDISSGNCLYTLQGYTSWVRFLVFSPNGVTLANGSSDQIVRLWDIS 1146
Query: 131 KKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSI 190
K C++T +GHT +N + F+PDG + SG D V++WD+++ K L+ + H + S+
Sbjct: 1147 SKKCLYTLQGHTNWVNAVAFSPDGATLASGSGDQTVRLWDISSSKCLYILQGHTSWVNSV 1206
Query: 191 DFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGFDD 247
F+P LA+GS+D+TV+ W++ + + + + + + V+++ F+PDG L SG D
Sbjct: 1207 VFNPDGSTLASGSSDQTVRLWEINSSKCLCTFQGHTSWVNSVVFNPDGSMLASGSSD 1263
Score = 150 bits (378), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 94/323 (29%), Positives = 155/323 (47%), Gaps = 7/323 (2%)
Query: 5 GYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSV 64
G L+ F H++ V + + L +G DQ V LW I L G + V SV
Sbjct: 938 GQCLKTFKGHTSRVRSVVFSPNSL-MLASGSSDQTVRLWDISSGECLYIFQGHTGWVYSV 996
Query: 65 AFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNL 124
AF+ ++ G+ ++LWD+ S+ GH S +V F G ASG D +
Sbjct: 997 AFNLDGSMLATGSGDQTVRLWDISSSQCFYIFQGHTSCVRSVVFSSDGAMLASGSDDQTV 1056
Query: 125 KIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHE 184
++WDI C++T +GHT + ++ F+PDG + SGG D +V++WD+++G L+ + +
Sbjct: 1057 RLWDISSGNCLYTLQGHTSCVRSVVFSPDGAMLASGGDDQIVRLWDISSGNCLYTLQGYT 1116
Query: 185 GHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSG 244
+R + F P LA GS+D+ V+ WD+ + + + + + V+A+ F PDG TL SG
Sbjct: 1117 SWVRFLVFSPNGVTLANGSSDQIVRLWDISSKKCLYTLQGHTNWVNAVAFSPDGATLASG 1176
Query: 245 F-DDNLKVYSWEPVICHDSVDMGWSTLGDLCIN-DGKLLGCSFYRNSVGIWVADVSHVEP 302
D ++++ C + S + + N DG L +V +W + S
Sbjct: 1177 SGDQTVRLWDISSSKCLYILQGHTSWVNSVVFNPDGSTLASGSSDQTVRLWEINSSKC-- 1234
Query: 303 YGVGAPEPDQSICTEVKFNPPGS 325
+ + S V FNP GS
Sbjct: 1235 --LCTFQGHTSWVNSVVFNPDGS 1255
Score = 148 bits (373), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 96/326 (29%), Positives = 157/326 (48%), Gaps = 13/326 (3%)
Query: 5 GYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSV 64
G L F H+ V ++ L TG DQ V LW I G +S V SV
Sbjct: 980 GECLYIFQGHTGWVYSVAFNLDG-SMLATGSGDQTVRLWDISSSQCFYIFQGHTSCVRSV 1038
Query: 65 AFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNL 124
F S ++ +G+ ++LWD+ + TL GH S +V F P G ASG D +
Sbjct: 1039 VFSSDGAMLASGSDDQTVRLWDISSGNCLYTLQGHTSCVRSVVFSPDGAMLASGGDDQIV 1098
Query: 125 KIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHE 184
++WDI C++T +G+T + + F+P+G + +G D +V++WD+++ K L+ + H
Sbjct: 1099 RLWDISSGNCLYTLQGYTSWVRFLVFSPNGVTLANGSSDQIVRLWDISSKKCLYTLQGHT 1158
Query: 185 GHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSG 244
+ ++ F P LA+GS D+TV+ WD+ + + + + + V+++ F+PDG TL SG
Sbjct: 1159 NWVNAVAFSPDGATLASGSGDQTVRLWDISSSKCLYILQGHTSWVNSVVFNPDGSTLASG 1218
Query: 245 FDDNLKVYSWE----PVICHDSVDMGWSTLGDLCIN-DGKLLGCSFYRNSVGIWVADVSH 299
D V WE +C W + + N DG +L +V +W D+S
Sbjct: 1219 SSDQ-TVRLWEINSSKCLCTFQGHTSW--VNSVVFNPDGSMLASGSSDKTVRLW--DISS 1273
Query: 300 VEPYGVGAPEPDQSICTEVKFNPPGS 325
+ + + + V FNP GS
Sbjct: 1274 SKC--LHTFQGHTNWVNSVAFNPDGS 1297
Score = 144 bits (362), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 73/248 (29%), Positives = 129/248 (52%), Gaps = 1/248 (0%)
Query: 2 AKRGYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPV 61
A G +L H++ VN + + + L +G DDQ V LW I L + G +S V
Sbjct: 893 AATGKELLTCKGHNSWVNSVGFSQDG-KMLASGSDDQTVRLWDISSGQCLKTFKGHTSRV 951
Query: 62 DSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMD 121
SV F +++ +G+S ++LWD+ + + GH +V F+ G A+G D
Sbjct: 952 RSVVFSPNSLMLASGSSDQTVRLWDISSGECLYIFQGHTGWVYSVAFNLDGSMLATGSGD 1011
Query: 122 TNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFK 181
+++WDI C + ++GHT + ++ F+ DG + SG D V++WD+++G L+ +
Sbjct: 1012 QTVRLWDISSSQCFYIFQGHTSCVRSVVFSSDGAMLASGSDDQTVRLWDISSGNCLYTLQ 1071
Query: 182 FHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTL 241
H +RS+ F P +LA+G D+ V+ WD+ + + + + + V + F P+G TL
Sbjct: 1072 GHTSCVRSVVFSPDGAMLASGGDDQIVRLWDISSGNCLYTLQGYTSWVRFLVFSPNGVTL 1131
Query: 242 FSGFDDNL 249
+G D +
Sbjct: 1132 ANGSSDQI 1139
Score = 135 bits (339), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 65/221 (29%), Positives = 116/221 (52%)
Query: 29 RFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLE 88
+ TG V W L++ G +S V+SV F ++ +G+ ++LWD+
Sbjct: 877 KLFATGDSGGIVRFWEAATGKELLTCKGHNSWVNSVGFSQDGKMLASGSDDQTVRLWDIS 936
Query: 89 ESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTI 148
+ ++T GH S +V F P ASG D +++WDI C++ ++GHT + ++
Sbjct: 937 SGQCLKTFKGHTSRVRSVVFSPNSLMLASGSSDQTVRLWDISSGECLYIFQGHTGWVYSV 996
Query: 149 RFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTV 208
F DG + +G D V++WD+++ + + F+ H +RS+ F +LA+GS D+TV
Sbjct: 997 AFNLDGSMLATGSGDQTVRLWDISSSQCFYIFQGHTSCVRSVVFSSDGAMLASGSDDQTV 1056
Query: 209 KFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGFDDNL 249
+ WD+ + + + + + V ++ F PDG L SG DD +
Sbjct: 1057 RLWDISSGNCLYTLQGHTSCVRSVVFSPDGAMLASGGDDQI 1097
Score = 134 bits (336), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 69/218 (31%), Positives = 113/218 (51%), Gaps = 1/218 (0%)
Query: 8 LQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFD 67
L F H+ VN ++ L +G DQ V LW I L + G +S V SV F
Sbjct: 1277 LHTFQGHTNWVNSVAFNPDG-SMLASGSGDQTVRLWEISSSKCLHTFQGHTSWVSSVTFS 1335
Query: 68 SAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIW 127
++ +G+ ++LW + + + T GH + +V F P G ASG D +++W
Sbjct: 1336 PDGTMLASGSDDQTVRLWSISSGECLYTFLGHTNWVGSVIFSPDGAILASGSGDQTVRLW 1395
Query: 128 DIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHI 187
I C++T +GH + +I F+PDG + SG D V++W++++G+ L+ H +
Sbjct: 1396 SISSGKCLYTLQGHNNWVGSIVFSPDGTLLASGSDDQTVRLWNISSGECLYTLHGHINSV 1455
Query: 188 RSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPE 225
RS+ F +LA+GS D T+K WD++T E I + + E
Sbjct: 1456 RSVAFSSDGLILASGSDDETIKLWDVKTGECIKTLKSE 1493
Score = 128 bits (321), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 64/187 (34%), Positives = 104/187 (55%)
Query: 61 VDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCM 120
V +VAF L G S G+++ W+ K + T GH S +V F G+ ASG
Sbjct: 867 VLTVAFSPDGKLFATGDSGGIVRFWEAATGKELLTCKGHNSWVNSVGFSQDGKMLASGSD 926
Query: 121 DTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDF 180
D +++WDI C+ T+KGHT + ++ F+P+ + SG D V++WD+++G+ L+ F
Sbjct: 927 DQTVRLWDISSGQCLKTFKGHTSRVRSVVFSPNSLMLASGSSDQTVRLWDISSGECLYIF 986
Query: 181 KFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRT 240
+ H G + S+ F+ +LATGS D+TV+ WD+ + + + + V ++ F DG
Sbjct: 987 QGHTGWVYSVAFNLDGSMLATGSGDQTVRLWDISSSQCFYIFQGHTSCVRSVVFSSDGAM 1046
Query: 241 LFSGFDD 247
L SG DD
Sbjct: 1047 LASGSDD 1053
>sp|Q8YTC2|Y2800_NOSS1 Uncharacterized WD repeat-containing protein alr2800 OS=Nostoc sp.
(strain PCC 7120 / UTEX 2576) GN=alr2800 PE=4 SV=1
Length = 1258
Score = 150 bits (380), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 91/269 (33%), Positives = 140/269 (52%), Gaps = 6/269 (2%)
Query: 29 RFLITGGDDQKVNLWAIGKPTALMSLC-GLSSPVDSVAFD-SAEVLVLAGASTGVIKLWD 86
+ L T D V +W + K L+ +C G S+ V V F E+L GA V KLW
Sbjct: 655 QLLATCDTDCHVRVWEV-KSGKLLLICRGHSNWVRFVVFSPDGEILASCGADENV-KLWS 712
Query: 87 LEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGIN 146
+ + ++TLTGH+ +V FHP GE AS D +K+WDI+ C+ T GHT +
Sbjct: 713 VRDGVCIKTLTGHEHEVFSVAFHPDGETLASASGDKTIKLWDIQDGTCLQTLTGHTDWVR 772
Query: 147 TIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADR 206
+ F+PDG + S D+ +K+WD++ GK L K H G +RS+ F LA+GS DR
Sbjct: 773 CVAFSPDGNTLASSAADHTIKLWDVSQGKCLRTLKSHTGWVRSVAFSADGQTLASGSGDR 832
Query: 207 TVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGFDD-NLKVYSWEPVICHDSVDM 265
T+K W+ T E + + V++I + PD + L SG D +K++ + IC ++
Sbjct: 833 TIKIWNYHTGECLKTYIGHTNSVYSIAYSPDSKILVSGSGDRTIKLWDCQTHICIKTLHG 892
Query: 266 GWSTLGDLCIN-DGKLLGCSFYRNSVGIW 293
+ + + + DG+ L C SV +W
Sbjct: 893 HTNEVCSVAFSPDGQTLACVSLDQSVRLW 921
Score = 125 bits (313), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 78/299 (26%), Positives = 141/299 (47%), Gaps = 17/299 (5%)
Query: 4 RGYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDS 63
+G L+ +H+ V ++ + L +G D+ + +W L + G ++ V S
Sbjct: 799 QGKCLRTLKSHTGWVRSVAFSADG-QTLASGSGDRTIKIWNYHTGECLKTYIGHTNSVYS 857
Query: 64 VAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTN 123
+A+ ++++G+ IKLWD + ++TL GH + +V F P G+ A +D +
Sbjct: 858 IAYSPDSKILVSGSGDRTIKLWDCQTHICIKTLHGHTNEVCSVAFSPDGQTLACVSLDQS 917
Query: 124 LKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFH 183
+++W+ R C+ + G+T + F+PD + + SG D VK+WD GK + + H
Sbjct: 918 VRLWNCRTGQCLKAWYGNTDWALPVAFSPDRQILASGSNDKTVKLWDWQTGKYISSLEGH 977
Query: 184 EGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFS 243
I I F P LA+ S D +V+ W++ T + V+A+ FHP G+ + +
Sbjct: 978 TDFIYGIAFSPDSQTLASASTDSSVRLWNISTGQCFQILLEHTDWVYAVVFHPQGKIIAT 1037
Query: 244 GFDD-NLKVYSWEPVICHDSVD--------MGWSTLGDLCINDGKLLGCSFYRNSVGIW 293
G D +K+++ C ++ M WS DG+LL + SV +W
Sbjct: 1038 GSADCTVKLWNISTGQCLKTLSEHSDKILGMAWSP-------DGQLLASASADQSVRLW 1089
Score = 124 bits (312), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 69/244 (28%), Positives = 118/244 (48%), Gaps = 1/244 (0%)
Query: 5 GYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSV 64
G LQ H+ V C++ L + D + LW + + L +L + V SV
Sbjct: 758 GTCLQTLTGHTDWVRCVAFSPDG-NTLASSAADHTIKLWDVSQGKCLRTLKSHTGWVRSV 816
Query: 65 AFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNL 124
AF + + +G+ IK+W+ + ++T GH ++ ++ + P + SG D +
Sbjct: 817 AFSADGQTLASGSGDRTIKIWNYHTGECLKTYIGHTNSVYSIAYSPDSKILVSGSGDRTI 876
Query: 125 KIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHE 184
K+WD + CI T GHT + ++ F+PDG+ + D V++W+ G+ L + +
Sbjct: 877 KLWDCQTHICIKTLHGHTNEVCSVAFSPDGQTLACVSLDQSVRLWNCRTGQCLKAWYGNT 936
Query: 185 GHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSG 244
+ F P +LA+GS D+TVK WD +T + I S ++ I F PD +TL S
Sbjct: 937 DWALPVAFSPDRQILASGSNDKTVKLWDWQTGKYISSLEGHTDFIYGIAFSPDSQTLASA 996
Query: 245 FDDN 248
D+
Sbjct: 997 STDS 1000
Score = 124 bits (310), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 75/290 (25%), Positives = 135/290 (46%), Gaps = 6/290 (2%)
Query: 37 DQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTL 96
DQ V LW L + G + VAF ++ +G++ +KLWD + K + +L
Sbjct: 915 DQSVRLWNCRTGQCLKAWYGNTDWALPVAFSPDRQILASGSNDKTVKLWDWQTGKYISSL 974
Query: 97 TGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRW 156
GH + F P + AS D+++++W+I C HT + + F P G+
Sbjct: 975 EGHTDFIYGIAFSPDSQTLASASTDSSVRLWNISTGQCFQILLEHTDWVYAVVFHPQGKI 1034
Query: 157 VVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETF 216
+ +G D VK+W+++ G+ L H I + + P LLA+ SAD++V+ WD T
Sbjct: 1035 IATGSADCTVKLWNISTGQCLKTLSEHSDKILGMAWSPDGQLLASASADQSVRLWDCCTG 1094
Query: 217 ELIGSTRPEVTGVHAITFHPDGRTLFS-GFDDNLKVYSWEPVICHDSVDMGWSTLGDLCI 275
+G R V++ F P+G + + D +K++ W+ C ++ + + D+
Sbjct: 1095 RCVGILRGHSNRVYSAIFSPNGEIIATCSTDQTVKIWDWQQGKCLKTLTGHTNWVFDIAF 1154
Query: 276 N-DGKLLGCSFYRNSVGIWVADVSHVEPYGVGAPEPDQSICTEVKFNPPG 324
+ DGK+L + + +V IW + +G + + V F+P G
Sbjct: 1155 SPDGKILASASHDQTVRIWDVNTGKCHHICIGHTH----LVSSVAFSPDG 1200
Score = 123 bits (308), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 70/226 (30%), Positives = 111/226 (49%), Gaps = 1/226 (0%)
Query: 31 LITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEES 90
L + D+ + LW I T L +L G + V VAF + + A+ IKLWD+ +
Sbjct: 741 LASASGDKTIKLWDIQDGTCLQTLTGHTDWVRCVAFSPDGNTLASSAADHTIKLWDVSQG 800
Query: 91 KMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRF 150
K +RTL H +V F G+ ASG D +KIW+ C+ TY GHT + +I +
Sbjct: 801 KCLRTLKSHTGWVRSVAFSADGQTLASGSGDRTIKIWNYHTGECLKTYIGHTNSVYSIAY 860
Query: 151 TPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKF 210
+PD + +VSG D +K+WD + H + S+ F P LA S D++V+
Sbjct: 861 SPDSKILVSGSGDRTIKLWDCQTHICIKTLHGHTNEVCSVAFSPDGQTLACVSLDQSVRL 920
Query: 211 WDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGFDD-NLKVYSWE 255
W+ T + + + + F PD + L SG +D +K++ W+
Sbjct: 921 WNCRTGQCLKAWYGNTDWALPVAFSPDRQILASGSNDKTVKLWDWQ 966
Score = 115 bits (289), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 70/234 (29%), Positives = 115/234 (49%), Gaps = 3/234 (1%)
Query: 29 RFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGAST-GVIKLWDL 87
+ L +G +D+ V LW + SL G + + +AF S + LA AST ++LW++
Sbjct: 949 QILASGSNDKTVKLWDWQTGKYISSLEGHTDFIYGIAF-SPDSQTLASASTDSSVRLWNI 1007
Query: 88 EESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINT 147
+ + L H AV FHP G+ A+G D +K+W+I C+ T H+ I
Sbjct: 1008 STGQCFQILLEHTDWVYAVVFHPQGKIIATGSADCTVKLWNISTGQCLKTLSEHSDKILG 1067
Query: 148 IRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRT 207
+ ++PDG+ + S D V++WD G+ + + H + S F P ++AT S D+T
Sbjct: 1068 MAWSPDGQLLASASADQSVRLWDCCTGRCVGILRGHSNRVYSAIFSPNGEIIATCSTDQT 1127
Query: 208 VKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSG-FDDNLKVYSWEPVICH 260
VK WD + + + + V I F PDG+ L S D ++++ CH
Sbjct: 1128 VKIWDWQQGKCLKTLTGHTNWVFDIAFSPDGKILASASHDQTVRIWDVNTGKCH 1181
Score = 113 bits (283), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 65/212 (30%), Positives = 106/212 (50%), Gaps = 7/212 (3%)
Query: 29 RFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLE 88
+ + TG D V LW I L +L S + +A+ L+ + ++ ++LWD
Sbjct: 1033 KIIATGSADCTVKLWNISTGQCLKTLSEHSDKILGMAWSPDGQLLASASADQSVRLWDCC 1092
Query: 89 ESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTI 148
+ V L GH + + F P GE A+ D +KIWD ++ C+ T GHT + I
Sbjct: 1093 TGRCVGILRGHSNRVYSAIFSPNGEIIATCSTDQTVKIWDWQQGKCLKTLTGHTNWVFDI 1152
Query: 149 RFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTV 208
F+PDG+ + S D V++WD+ GK H H + S+ F P ++A+GS D+TV
Sbjct: 1153 AFSPDGKILASASHDQTVRIWDVNTGKCHHICIGHTHLVSSVAFSPDGEVVASGSQDQTV 1212
Query: 209 KFWDLETFELIGSTRPE-------VTGVHAIT 233
+ W+++T E + R + +TGV +T
Sbjct: 1213 RIWNVKTGECLQILRAKRLYEGMNITGVTGLT 1244
Score = 112 bits (279), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 67/226 (29%), Positives = 112/226 (49%), Gaps = 4/226 (1%)
Query: 38 QKVNLWAIGKPTALMSLCGLSSPVDSV--AFDSAEVLVLAGASTGV-IKLWDLEESKMVR 94
Q VNL + + +S C + + ++ A S E +LA T +++W+++ K++
Sbjct: 619 QGVNLHDVDFANSDLSCCVFTETLGNILSAAFSPEGQLLATCDTDCHVRVWEVKSGKLLL 678
Query: 95 TLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDG 154
GH + V F P GE AS D N+K+W +R CI T GH + ++ F PDG
Sbjct: 679 ICRGHSNWVRFVVFSPDGEILASCGADENVKLWSVRDGVCIKTLTGHEHEVFSVAFHPDG 738
Query: 155 RWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLE 214
+ S D +K+WD+ G L H +R + F P LA+ +AD T+K WD+
Sbjct: 739 ETLASASGDKTIKLWDIQDGTCLQTLTGHTDWVRCVAFSPDGNTLASSAADHTIKLWDVS 798
Query: 215 TFELIGSTRPEVTGVHAITFHPDGRTLFSGFDD-NLKVYSWEPVIC 259
+ + + + V ++ F DG+TL SG D +K++++ C
Sbjct: 799 QGKCLRTLKSHTGWVRSVAFSADGQTLASGSGDRTIKIWNYHTGEC 844
>sp|Q00808|HETE1_PODAS Vegetative incompatibility protein HET-E-1 OS=Podospora anserina
GN=HET-E1 PE=4 SV=1
Length = 1356
Score = 140 bits (352), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 78/259 (30%), Positives = 128/259 (49%), Gaps = 2/259 (0%)
Query: 9 QEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDS 68
Q H +V ++ R + +G DD+ + +W T +L G V SV F
Sbjct: 1003 QTLEGHGGSVWSVAFSPDGQR-VASGSDDKTIKIWDTASGTCTQTLEGHGGWVQSVVFSP 1061
Query: 69 AEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWD 128
V +G+ IK+WD +TL GH + +V F P G+ ASG +D +KIWD
Sbjct: 1062 DGQRVASGSDDHTIKIWDAVSGTCTQTLEGHGDSVWSVAFSPDGQRVASGSIDGTIKIWD 1121
Query: 129 IRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIR 188
C T +GH ++++ F+PDG+ V SG D +K+WD +G + H G ++
Sbjct: 1122 AASGTCTQTLEGHGGWVHSVAFSPDGQRVASGSIDGTIKIWDAASGTCTQTLEGHGGWVQ 1181
Query: 189 SIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGFDDN 248
S+ F P +A+GS+D+T+K WD + + V ++ F PDG+ + SG DN
Sbjct: 1182 SVAFSPDGQRVASGSSDKTIKIWDTASGTCTQTLEGHGGWVQSVAFSPDGQRVASGSSDN 1241
Query: 249 -LKVYSWEPVICHDSVDMG 266
+K++ C ++++G
Sbjct: 1242 TIKIWDTASGTCTQTLNVG 1260
Score = 135 bits (339), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 77/245 (31%), Positives = 120/245 (48%), Gaps = 2/245 (0%)
Query: 9 QEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDS 68
Q H ++V ++ R + +G DD+ + +W T +L G V SVAF
Sbjct: 835 QTLEGHGSSVLSVAFSADGQR-VASGSDDKTIKIWDTASGTGTQTLEGHGGSVWSVAFSP 893
Query: 69 AEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWD 128
V +G+ IK+WD +TL GH +V F P G+ ASG D +KIWD
Sbjct: 894 DRERVASGSDDKTIKIWDAASGTCTQTLEGHGGRVQSVAFSPDGQRVASGSDDHTIKIWD 953
Query: 129 IRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIR 188
C T +GH + ++ F+PDG+ V SG D +K+WD +G + H G +
Sbjct: 954 AASGTCTQTLEGHGSSVLSVAFSPDGQRVASGSGDKTIKIWDTASGTCTQTLEGHGGSVW 1013
Query: 189 SIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGFDDN 248
S+ F P +A+GS D+T+K WD + + V ++ F PDG+ + SG DD+
Sbjct: 1014 SVAFSPDGQRVASGSDDKTIKIWDTASGTCTQTLEGHGGWVQSVVFSPDGQRVASGSDDH 1073
Query: 249 -LKVY 252
+K++
Sbjct: 1074 TIKIW 1078
Score = 132 bits (333), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 78/249 (31%), Positives = 120/249 (48%), Gaps = 2/249 (0%)
Query: 5 GYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSV 64
G Q H +V ++ R + +G DD+ + +W T +L G V SV
Sbjct: 873 GTGTQTLEGHGGSVWSVAFSPDRER-VASGSDDKTIKIWDAASGTCTQTLEGHGGRVQSV 931
Query: 65 AFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNL 124
AF V +G+ IK+WD +TL GH S+ +V F P G+ ASG D +
Sbjct: 932 AFSPDGQRVASGSDDHTIKIWDAASGTCTQTLEGHGSSVLSVAFSPDGQRVASGSGDKTI 991
Query: 125 KIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHE 184
KIWD C T +GH + ++ F+PDG+ V SG D +K+WD +G + H
Sbjct: 992 KIWDTASGTCTQTLEGHGGSVWSVAFSPDGQRVASGSDDKTIKIWDTASGTCTQTLEGHG 1051
Query: 185 GHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSG 244
G ++S+ F P +A+GS D T+K WD + + V ++ F PDG+ + SG
Sbjct: 1052 GWVQSVVFSPDGQRVASGSDDHTIKIWDAVSGTCTQTLEGHGDSVWSVAFSPDGQRVASG 1111
Query: 245 -FDDNLKVY 252
D +K++
Sbjct: 1112 SIDGTIKIW 1120
Score = 94.4 bits (233), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 84/166 (50%), Gaps = 1/166 (0%)
Query: 88 EESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINT 147
E + +TL GH S+ +V F G+ ASG D +KIWD T +GH + +
Sbjct: 829 EWNACTQTLEGHGSSVLSVAFSADGQRVASGSDDKTIKIWDTASGTGTQTLEGHGGSVWS 888
Query: 148 IRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRT 207
+ F+PD V SG D +K+WD +G + H G ++S+ F P +A+GS D T
Sbjct: 889 VAFSPDRERVASGSDDKTIKIWDAASGTCTQTLEGHGGRVQSVAFSPDGQRVASGSDDHT 948
Query: 208 VKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGF-DDNLKVY 252
+K WD + + + V ++ F PDG+ + SG D +K++
Sbjct: 949 IKIWDAASGTCTQTLEGHGSSVLSVAFSPDGQRVASGSGDKTIKIW 994
>sp|P49695|PKWA_THECU Probable serine/threonine-protein kinase PkwA OS=Thermomonospora
curvata GN=pkwA PE=3 SV=1
Length = 742
Score = 132 bits (332), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 77/248 (31%), Positives = 118/248 (47%), Gaps = 10/248 (4%)
Query: 5 GYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSV 64
G +L H+ V ++ L +G DD V LW + G + V +
Sbjct: 491 GDELHTLEGHTDWVRAVAFSPDGA-LLASGSDDATVRLWDVAAAEERAVFEGHTHYVLDI 549
Query: 65 AFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNL 124
AF +V +G+ G +LW++ L GH AV F P G ASG D +
Sbjct: 550 AFSPDGSMVASGSRDGTARLWNVATGTEHAVLKGHTDYVYAVAFSPDGSMVASGSRDGTI 609
Query: 125 KIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHE 184
++WD+ + + ++ F+PDG +V G D+ V +WD+ +G+ LH F+ H
Sbjct: 610 RLWDVATGKERDVLQAPAENVVSLAFSPDGSMLVHGS-DSTVHLWDVASGEALHTFEGHT 668
Query: 185 GHIRSIDFHPLEFLLATGSADRTVKFWDLETFE----LIGSTRPEVTGVHAITFHPDGRT 240
+R++ F P LLA+GS DRT++ WD+ E L G T P VH++ FHP+G T
Sbjct: 669 DWVRAVAFSPDGALLASGSDDRTIRLWDVAAQEEHTTLEGHTEP----VHSVAFHPEGTT 724
Query: 241 LFSGFDDN 248
L S +D
Sbjct: 725 LASASEDG 732
Score = 106 bits (265), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 59/205 (28%), Positives = 96/205 (46%), Gaps = 2/205 (0%)
Query: 11 FVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAE 70
F H+ V I+ + +G D LW + T L G + V +VAF
Sbjct: 539 FEGHTHYVLDIAFSPDGS-MVASGSRDGTARLWNVATGTEHAVLKGHTDYVYAVAFSPDG 597
Query: 71 VLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIR 130
+V +G+ G I+LWD+ K L N ++ F P G G D+ + +WD+
Sbjct: 598 SMVASGSRDGTIRLWDVATGKERDVLQAPAENVVSLAFSPDGSMLVHGS-DSTVHLWDVA 656
Query: 131 KKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSI 190
+HT++GHT + + F+PDG + SG D +++WD+ A + + H + S+
Sbjct: 657 SGEALHTFEGHTDWVRAVAFSPDGALLASGSDDRTIRLWDVAAQEEHTTLEGHTEPVHSV 716
Query: 191 DFHPLEFLLATGSADRTVKFWDLET 215
FHP LA+ S D T++ W + T
Sbjct: 717 AFHPEGTTLASASEDGTIRIWPIAT 741
Score = 105 bits (261), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 57/190 (30%), Positives = 93/190 (48%)
Query: 63 SVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDT 122
+VAF L+ G+ +I +WD+ + TL GH AV F P G ASG D
Sbjct: 464 AVAFSPGGSLLAGGSGDKLIHVWDVASGDELHTLEGHTDWVRAVAFSPDGALLASGSDDA 523
Query: 123 NLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKF 182
+++WD+ ++GHT + I F+PDG V SG D ++W++ G K
Sbjct: 524 TVRLWDVAAAEERAVFEGHTHYVLDIAFSPDGSMVASGSRDGTARLWNVATGTEHAVLKG 583
Query: 183 HEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLF 242
H ++ ++ F P ++A+GS D T++ WD+ T + + V ++ F PDG L
Sbjct: 584 HTDYVYAVAFSPDGSMVASGSRDGTIRLWDVATGKERDVLQAPAENVVSLAFSPDGSMLV 643
Query: 243 SGFDDNLKVY 252
G D + ++
Sbjct: 644 HGSDSTVHLW 653
>sp|Q8YV57|Y2124_NOSS1 Uncharacterized WD repeat-containing protein all2124 OS=Nostoc sp.
(strain PCC 7120 / UTEX 2576) GN=all2124 PE=4 SV=1
Length = 1683
Score = 128 bits (322), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 76/246 (30%), Positives = 123/246 (50%), Gaps = 5/246 (2%)
Query: 6 YKLQE---FVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVD 62
+++QE H V ISI + + + +G D+ + LW+ +L G V
Sbjct: 1060 FEMQERNRLEGHKDGVISISISRDG-QTIASGSLDKTIKLWS-RDGRLFRTLNGHEDAVY 1117
Query: 63 SVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDT 122
SV+F + +G S IKLW + +++T+TGH+ V F P G+ AS D
Sbjct: 1118 SVSFSPDGQTIASGGSDKTIKLWQTSDGTLLKTITGHEQTVNNVYFSPDGKNLASASSDH 1177
Query: 123 NLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKF 182
++K+WD + T GH+ G+ T+RF+PDG+ + +G D VK+W GKLL
Sbjct: 1178 SIKLWDTTSGQLLMTLTGHSAGVITVRFSPDGQTIAAGSEDKTVKLWHRQDGKLLKTLNG 1237
Query: 183 HEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLF 242
H+ + S+ F P LA+ SAD+T+K W + +L+ + + V + F DG+ +
Sbjct: 1238 HQDWVNSLSFSPDGKTLASASADKTIKLWRIADGKLVKTLKGHNDSVWDVNFSSDGKAIA 1297
Query: 243 SGFDDN 248
S DN
Sbjct: 1298 SASRDN 1303
Score = 121 bits (304), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 73/251 (29%), Positives = 127/251 (50%), Gaps = 4/251 (1%)
Query: 3 KRGYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVD 62
+ G +L+ F HS V ++ + + + D + LW + L L G +S V
Sbjct: 1310 RHGIELETFTGHSGGVYAVNFLPDS-NIIASASLDNTIRLWQRPLISPLEVLAG-NSGVY 1367
Query: 63 SVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDT 122
+V+F ++ + G I+LW ++ +++TL G+K+ + F P G+ AS D
Sbjct: 1368 AVSFLHDGSIIATAGADGNIQLWHSQDGSLLKTLPGNKA-IYGISFTPQGDLIASANADK 1426
Query: 123 NLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKF 182
+KIW +R + T GH +N + F+PDG+ + S DN VK+W+++ GK K
Sbjct: 1427 TVKIWRVRDGKALKTLIGHDNEVNKVNFSPDGKTLASASRDNTVKLWNVSDGKFKKTLKG 1486
Query: 183 HEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLF 242
H + + F P ++A+ SAD+T++ WD + LI S V+++ F+PDG L
Sbjct: 1487 HTDEVFWVSFSPDGKIIASASADKTIRLWDSFSGNLIKSLPAHNDLVYSVNFNPDGSMLA 1546
Query: 243 S-GFDDNLKVY 252
S D +K++
Sbjct: 1547 STSADKTVKLW 1557
Score = 117 bits (294), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 68/244 (27%), Positives = 122/244 (50%), Gaps = 3/244 (1%)
Query: 10 EFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSA 69
E +A ++ V +S + T G D + LW + L +L G + + ++F
Sbjct: 1358 EVLAGNSGVYAVSFLHDGS-IIATAGADGNIQLWHSQDGSLLKTLPG-NKAIYGISFTPQ 1415
Query: 70 EVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDI 129
L+ + + +K+W + + K ++TL GH + V F P G+ AS D +K+W++
Sbjct: 1416 GDLIASANADKTVKIWRVRDGKALKTLIGHDNEVNKVNFSPDGKTLASASRDNTVKLWNV 1475
Query: 130 RKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRS 189
T KGHT + + F+PDG+ + S D +++WD +G L+ H + S
Sbjct: 1476 SDGKFKKTLKGHTDEVFWVSFSPDGKIIASASADKTIRLWDSFSGNLIKSLPAHNDLVYS 1535
Query: 190 IDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGFDDN- 248
++F+P +LA+ SAD+TVK W L+ + V++ +F PDGR + S +D
Sbjct: 1536 VNFNPDGSMLASTSADKTVKLWRSHDGHLLHTFSGHSNVVYSSSFSPDGRYIASASEDKT 1595
Query: 249 LKVY 252
+K++
Sbjct: 1596 VKIW 1599
Score = 98.2 bits (243), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 91/176 (51%), Gaps = 4/176 (2%)
Query: 72 LVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRK 131
L LA +T L++++E L GHK ++ G+ ASG +D +K+W R
Sbjct: 1047 LKLATVTTLQQALFEMQERN---RLEGHKDGVISISISRDGQTIASGSLDKTIKLWS-RD 1102
Query: 132 KGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSID 191
T GH + ++ F+PDG+ + SGG D +K+W + G LL HE + ++
Sbjct: 1103 GRLFRTLNGHEDAVYSVSFSPDGQTIASGGSDKTIKLWQTSDGTLLKTITGHEQTVNNVY 1162
Query: 192 FHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGFDD 247
F P LA+ S+D ++K WD + +L+ + GV + F PDG+T+ +G +D
Sbjct: 1163 FSPDGKNLASASSDHSIKLWDTTSGQLLMTLTGHSAGVITVRFSPDGQTIAAGSED 1218
Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 67/141 (47%), Gaps = 1/141 (0%)
Query: 29 RFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLE 88
+ + + D+ + LW + SL + V SV F+ ++ + ++ +KLW
Sbjct: 1501 KIIASASADKTIRLWDSFSGNLIKSLPAHNDLVYSVNFNPDGSMLASTSADKTVKLWRSH 1560
Query: 89 ESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTI 148
+ ++ T +GH + + F P G + AS D +KIW I + T H G+ +
Sbjct: 1561 DGHLLHTFSGHSNVVYSSSFSPDGRYIASASEDKTVKIWQIDGH-LLTTLPQHQAGVMSA 1619
Query: 149 RFTPDGRWVVSGGFDNVVKVW 169
F+PDG+ ++SG D K+W
Sbjct: 1620 IFSPDGKTLISGSLDTTTKIW 1640
>sp|Q9WUC8|PLRG1_RAT Pleiotropic regulator 1 OS=Rattus norvegicus GN=Plrg1 PE=2 SV=1
Length = 514
Score = 125 bits (313), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 68/251 (27%), Positives = 121/251 (48%), Gaps = 5/251 (1%)
Query: 6 YKLQEFVA-HSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSV 64
+KL ++ H V CI++ + ++ +TG D+ + +W + +SL G S V V
Sbjct: 194 WKLYRVISGHLGWVRCIAV-EPGNQWFVTGSADRTIKIWDLASGKLKLSLTGHISTVRGV 252
Query: 65 AFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNL 124
+ + + +K WDLE +K++R GH S ++ HP + + D+
Sbjct: 253 IVSTRSPYLFSCGEDKQVKCWDLEYNKVIRHYHGHLSAVYGLDLHPTIDVLVTCSRDSTA 312
Query: 125 KIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHE 184
+IWD+R K +HT GHT + T+R +++G D +++WDL AGK H+
Sbjct: 313 RIWDVRTKASVHTLSGHTNAVATVRCQAAEPQIITGSHDTTIRLWDLVAGKTRVTLTNHK 372
Query: 185 GHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSG 244
+R++ HPL + A+GS D +K W I + ++ + + DG L SG
Sbjct: 373 KSVRAVVLHPLHYTFASGSPD-NIKQWKFPDGGFIQNLSGHNAIINTLAVNTDG-VLVSG 430
Query: 245 FDDN-LKVYSW 254
D+ + ++ W
Sbjct: 431 ADNGTMHLWDW 441
>sp|O43660|PLRG1_HUMAN Pleiotropic regulator 1 OS=Homo sapiens GN=PLRG1 PE=1 SV=1
Length = 514
Score = 124 bits (311), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 68/251 (27%), Positives = 121/251 (48%), Gaps = 5/251 (1%)
Query: 6 YKLQEFVA-HSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSV 64
+KL ++ H V CI++ + ++ +TG D+ + +W + +SL G S V V
Sbjct: 194 WKLYRVISGHLGWVRCIAV-EPGNQWFVTGSADRTIKIWDLASGKLKLSLTGHISTVRGV 252
Query: 65 AFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNL 124
+ + + +K WDLE +K++R GH S ++ HP + + D+
Sbjct: 253 IVSTRSPYLFSCGEDKQVKCWDLEYNKVIRHYHGHLSAVYGLDLHPTIDVLVTCSRDSTA 312
Query: 125 KIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHE 184
+IWD+R K +HT GHT + T+R +++G D +++WDL AGK H+
Sbjct: 313 RIWDVRTKASVHTLSGHTNAVATVRCQAAEPQIITGSHDTTIRLWDLVAGKTRVTLTNHK 372
Query: 185 GHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSG 244
+R++ HP + A+GS D +K W I + ++ +T + DG L SG
Sbjct: 373 KSVRAVVLHPRHYTFASGSPD-NIKQWKFPDGSFIQNLSGHNAIINTLTVNSDG-VLVSG 430
Query: 245 FDDN-LKVYSW 254
D+ + ++ W
Sbjct: 431 ADNGTMHLWDW 441
>sp|Q2KID6|PLRG1_BOVIN Pleiotropic regulator 1 OS=Bos taurus GN=PLRG1 PE=2 SV=1
Length = 513
Score = 124 bits (311), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 68/251 (27%), Positives = 121/251 (48%), Gaps = 5/251 (1%)
Query: 6 YKLQEFVA-HSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSV 64
+KL ++ H V CI++ + ++ +TG D+ + +W + +SL G S V V
Sbjct: 193 WKLYRVISGHLGWVRCIAV-EPGNQWFVTGSADRTIKIWDLASGKLKLSLTGHISTVRGV 251
Query: 65 AFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNL 124
+ + + +K WDLE +K++R GH S ++ HP + + D+
Sbjct: 252 IVSTRSPYLFSCGEDKQVKCWDLEYNKVIRHYHGHLSAVYGLDLHPTIDVLVTCSRDSTA 311
Query: 125 KIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHE 184
+IWD+R K +HT GHT + T+R +++G D +++WDL AGK H+
Sbjct: 312 RIWDVRTKASVHTLSGHTNAVATVRCQAAEPQIITGSHDTTIRLWDLVAGKTRVTLTNHK 371
Query: 185 GHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSG 244
+R++ HP + A+GS D +K W I + ++ +T + DG L SG
Sbjct: 372 KSVRAVVLHPRHYTFASGSPD-NIKQWKFPDGSFIQNLSGHNAIINTLTVNSDG-VLVSG 429
Query: 245 FDDN-LKVYSW 254
D+ + ++ W
Sbjct: 430 ADNGTMHLWDW 440
>sp|Q922V4|PLRG1_MOUSE Pleiotropic regulator 1 OS=Mus musculus GN=Plrg1 PE=2 SV=1
Length = 513
Score = 123 bits (309), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 68/251 (27%), Positives = 121/251 (48%), Gaps = 5/251 (1%)
Query: 6 YKLQEFVA-HSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSV 64
+KL ++ H V CI++ + ++ +TG D+ + +W + +SL G S V V
Sbjct: 193 WKLYRVISGHLGWVRCIAV-EPGNQWFVTGSADRTIKIWDLASGKLKLSLTGHISTVRGV 251
Query: 65 AFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNL 124
+ + + +K WDLE +K++R GH S ++ HP + + D+
Sbjct: 252 IVSTRSPYLFSCGEDKQVKCWDLEYNKVIRHYHGHLSAVYGLDLHPTLDVLVTCSRDSTA 311
Query: 125 KIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHE 184
+IWD+R K +HT GHT + T+R +++G D +++WDL AGK H+
Sbjct: 312 RIWDVRTKASVHTLSGHTNAVATVRCQAAEPQIITGSHDTTIRLWDLVAGKTRVTLTNHK 371
Query: 185 GHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSG 244
+R++ HPL + A+GS D +K W I + ++ + + DG L SG
Sbjct: 372 KSVRAVVLHPLLYTFASGSPD-NIKQWKFPDGGFIQNLSGHNAIINTLAVNADG-VLVSG 429
Query: 245 FDDN-LKVYSW 254
D+ + ++ W
Sbjct: 430 ADNGTMHLWDW 440
>sp|P38129|TAF5_YEAST Transcription initiation factor TFIID subunit 5 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=TAF5 PE=1
SV=1
Length = 798
Score = 123 bits (309), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 63/205 (30%), Positives = 102/205 (49%), Gaps = 2/205 (0%)
Query: 11 FVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAE 70
V HS V S ++L++G +D+ V LW++ TAL+S G + PV V+F
Sbjct: 521 LVGHSGTVYSTSFSPDN-KYLLSGSEDKTVRLWSMDTHTALVSYKGHNHPVWDVSFSPLG 579
Query: 71 VLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIR 130
+ +LW + +R GH ++ V FHP G + +G D ++WD+
Sbjct: 580 HYFATASHDQTARLWSCDHIYPLRIFAGHLNDVDCVSFHPNGCYVFTGSSDKTCRMWDVS 639
Query: 131 KKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFH-EGHIRS 189
+ + GHT + +I PDGRW+ +G D ++ VWD+ GK L + H + I S
Sbjct: 640 TGDSVRLFLGHTAPVISIAVCPDGRWLSTGSEDGIINVWDIGTGKRLKQMRGHGKNAIYS 699
Query: 190 IDFHPLEFLLATGSADRTVKFWDLE 214
+ + +L +G AD TV+ WDL+
Sbjct: 700 LSYSKEGNVLISGGADHTVRVWDLK 724
Score = 100 bits (250), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 68/291 (23%), Positives = 124/291 (42%), Gaps = 29/291 (9%)
Query: 8 LQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIG------------------KPT 49
+ F + +++C+ CR G D + +W++ PT
Sbjct: 459 MYTFQNTNKDMSCLDFSDD-CRIAAAGFQDSYIKIWSLDGSSLNNPNIALNNNDKDEDPT 517
Query: 50 ALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFH 109
+L G S V S +F +L+G+ ++LW ++ + + GH V F
Sbjct: 518 C-KTLVGHSGTVYSTSFSPDNKYLLSGSEDKTVRLWSMDTHTALVSYKGHNHPVWDVSFS 576
Query: 110 PFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVW 169
P G +FA+ D ++W + + GH ++ + F P+G +V +G D ++W
Sbjct: 577 PLGHYFATASHDQTARLWSCDHIYPLRIFAGHLNDVDCVSFHPNGCYVFTGSSDKTCRMW 636
Query: 170 DLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPE-VTG 228
D++ G + F H + SI P L+TGS D + WD+ T + + R
Sbjct: 637 DVSTGDSVRLFLGHTAPVISIAVCPDGRWLSTGSEDGIINVWDIGTGKRLKQMRGHGKNA 696
Query: 229 VHAITFHPDGRTLFSGFDD------NLKVYSWEPVICHDSVDMGWSTLGDL 273
++++++ +G L SG D +LK + EP D +G+ LGD+
Sbjct: 697 IYSLSYSKEGNVLISGGADHTVRVWDLKKATTEPSAEPDEPFIGY--LGDV 745
Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 53/125 (42%), Gaps = 17/125 (13%)
Query: 134 CIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKF----------- 182
C++T++ + ++ + F+ D R +G D+ +K+W L L +
Sbjct: 458 CMYTFQNTNKDMSCLDFSDDCRIAAAGFQDSYIKIWSLDGSSLNNPNIALNNNDKDEDPT 517
Query: 183 ------HEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHP 236
H G + S F P L +GS D+TV+ W ++T + S + V ++F P
Sbjct: 518 CKTLVGHSGTVYSTSFSPDNKYLLSGSEDKTVRLWSMDTHTALVSYKGHNHPVWDVSFSP 577
Query: 237 DGRTL 241
G
Sbjct: 578 LGHYF 582
>sp|Q3MHE2|PRP4_BOVIN U4/U6 small nuclear ribonucleoprotein Prp4 OS=Bos taurus GN=PRPF4
PE=2 SV=1
Length = 521
Score = 123 bits (308), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 82/290 (28%), Positives = 134/290 (46%), Gaps = 33/290 (11%)
Query: 29 RFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAF--------DSAEVLVLAGASTG 80
+ L T LW++ L +L G ++ V ++ F D +V + + A+ G
Sbjct: 243 KMLATACWSGLCKLWSVPDCNLLHTLRGHNTNVGAIVFHPKSTVSLDQKDVNLASCAADG 302
Query: 81 VIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKG 140
+KLW L+ + V + GH V +HP G F + C D + ++WD+ + I +G
Sbjct: 303 SVKLWSLDSDEPVADIEGHTVRVARVTWHPSGRFLGTTCYDRSWRLWDLEAQEEILHQEG 362
Query: 141 HTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLA 200
H+ G+ I F DG +GG D +VWDL G+ + + H I I+F P + +A
Sbjct: 363 HSMGVYDIAFHQDGSLAGTGGLDAFGRVWDLRTGRCIMFLEGHLKEIYGINFSPNGYHIA 422
Query: 201 TGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHP-DGRTLFSG-FDDNLKVYSWEPVI 258
TGS D T K WDL + + V + F P G L +G +D+ K+++ P
Sbjct: 423 TGSGDNTCKVWDLRQRRCVYTIPAHQNLVTGVKFEPIHGNFLLTGAYDNTAKIWT-HP-- 479
Query: 259 CHDSVDMGWSTLGDLCINDGKLLG------------CSFYRNSVGIWVAD 296
GWS L L ++GK++G CS+ R + +W+A+
Sbjct: 480 -------GWSPLKTLAGHEGKVMGLDISSDGQLIATCSYDR-TFKLWMAE 521
>sp|Q5NVD0|PRP4_PONAB U4/U6 small nuclear ribonucleoprotein Prp4 OS=Pongo abelii GN=PRPF4
PE=2 SV=1
Length = 521
Score = 123 bits (308), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 92/327 (28%), Positives = 145/327 (44%), Gaps = 45/327 (13%)
Query: 4 RGYKLQEF--VAHSANVNCISIGK----KACRF------LITGGDDQKVNLWAIGKPTAL 51
R ++QE S N C IG C F L T LW++ L
Sbjct: 206 RASQMQELHKSLRSLNNFCSQIGDDRPISYCHFSPNSKMLATACWSGLCKLWSVPDCNLL 265
Query: 52 MSLCGLSSPVDSVAF--------DSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNC 103
+L G ++ V ++ F D +V + + A+ G +KLW L+ + V + GH
Sbjct: 266 HTLRGHNTNVGAIVFHPKSTVSLDQKDVNLASCAADGSVKLWSLDSDEPVADIEGHTVRV 325
Query: 104 TAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFD 163
V +HP G F + C D + ++WD+ + I +GH+ G+ I F DG +GG D
Sbjct: 326 ARVMWHPSGRFLGTTCYDRSWRLWDLEAQEEILHQEGHSMGVYDIAFHQDGSLAGTGGLD 385
Query: 164 NVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTR 223
+VWDL G+ + + H I I+F P + +ATGS D T K WDL + +
Sbjct: 386 AFGRVWDLRTGRCIMFLEGHLKEIYGINFSPNGYHIATGSGDNTCKVWDLRQRRCVYTIP 445
Query: 224 PEVTGVHAITFHP-DGRTLFSG-FDDNLKVYSWEPVICHDSVDMGWSTLGDLCINDGKLL 281
V + F P G L +G +D+ K+++ P GWS L L ++GK++
Sbjct: 446 AHQNLVTGVKFEPIHGNFLLTGAYDNTAKIWT-HP---------GWSPLKTLAGHEGKVM 495
Query: 282 G------------CSFYRNSVGIWVAD 296
G CS+ R + +W+A+
Sbjct: 496 GLDISSDGQLIATCSYDR-TFKLWMAE 521
>sp|Q9DAW6|PRP4_MOUSE U4/U6 small nuclear ribonucleoprotein Prp4 OS=Mus musculus GN=Prpf4
PE=2 SV=1
Length = 521
Score = 123 bits (308), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 82/290 (28%), Positives = 135/290 (46%), Gaps = 33/290 (11%)
Query: 29 RFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAF--------DSAEVLVLAGASTG 80
+ L T LW++ + L +L G ++ V ++ F D +V + + A+ G
Sbjct: 243 KMLATACWSGLCKLWSVPDCSLLHTLRGHNTNVGAIVFHPKSTVSLDQKDVNLASCAADG 302
Query: 81 VIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKG 140
+KLW L+ + V + GH V +HP G F + C D + ++WD+ + I +G
Sbjct: 303 SVKLWSLDSDEPVADIEGHTVRVARVMWHPSGRFLGTTCYDRSWRLWDLEAQEEILHQEG 362
Query: 141 HTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLA 200
H+ G+ I F DG +GG D +VWDL G+ + + H I I+F P + +A
Sbjct: 363 HSMGVYDIAFHQDGSLAGTGGLDAFGRVWDLRTGRCIMFLEGHLKEIYGINFSPNGYHIA 422
Query: 201 TGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHP-DGRTLFSG-FDDNLKVYSWEPVI 258
TGS D T K WDL + + V + F P G L +G +D+ K+++ P
Sbjct: 423 TGSGDNTCKVWDLRQRRCVYTIPAHQNLVTGVKFEPIHGDFLLTGAYDNTAKIWT-HP-- 479
Query: 259 CHDSVDMGWSTLGDLCINDGKLLG------------CSFYRNSVGIWVAD 296
GWS L L ++GK++G CS+ R + +W+A+
Sbjct: 480 -------GWSPLKTLAGHEGKVMGLDISSDGQLIATCSYDR-TFKLWMAE 521
>sp|O43172|PRP4_HUMAN U4/U6 small nuclear ribonucleoprotein Prp4 OS=Homo sapiens GN=PRPF4
PE=1 SV=2
Length = 522
Score = 122 bits (306), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 82/290 (28%), Positives = 134/290 (46%), Gaps = 33/290 (11%)
Query: 29 RFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAF--------DSAEVLVLAGASTG 80
+ L T LW++ L +L G ++ V ++ F D +V + + A+ G
Sbjct: 244 KMLATACWSGLCKLWSVPDCNLLHTLRGHNTNVGAIVFHPKSTVSLDPKDVNLASCAADG 303
Query: 81 VIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKG 140
+KLW L+ + V + GH V +HP G F + C D + ++WD+ + I +G
Sbjct: 304 SVKLWSLDSDEPVADIEGHTVRVARVMWHPSGRFLGTTCYDRSWRLWDLEAQEEILHQEG 363
Query: 141 HTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLA 200
H+ G+ I F DG +GG D +VWDL G+ + + H I I+F P + +A
Sbjct: 364 HSMGVYDIAFHQDGSLAGTGGLDAFGRVWDLRTGRCIMFLEGHLKEIYGINFSPNGYHIA 423
Query: 201 TGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHP-DGRTLFSG-FDDNLKVYSWEPVI 258
TGS D T K WDL + + V + F P G L +G +D+ K+++ P
Sbjct: 424 TGSGDNTCKVWDLRQRRCVYTIPAHQNLVTGVKFEPIHGNFLLTGAYDNTAKIWT-HP-- 480
Query: 259 CHDSVDMGWSTLGDLCINDGKLLG------------CSFYRNSVGIWVAD 296
GWS L L ++GK++G CS+ R + +W+A+
Sbjct: 481 -------GWSPLKTLAGHEGKVMGLDISSDGQLIATCSYDR-TFKLWMAE 522
>sp|C4Q0P6|LIS1_SCHMA Lissencephaly-1 homolog OS=Schistosoma mansoni GN=Smp_129340 PE=3
SV=1
Length = 417
Score = 122 bits (306), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 72/252 (28%), Positives = 123/252 (48%), Gaps = 22/252 (8%)
Query: 31 LITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEES 90
++ +D + +W +L G + V VAFD + + + ++ +KLWD
Sbjct: 137 FVSASEDASIKVWDYETGEFEHTLKGHTDSVQDVAFDPSGKFLASCSADMQVKLWDFTIY 196
Query: 91 KMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRF 150
+ ++TLTGH N ++V F P G+F S D +K+W++ C T+ GHT I ++R
Sbjct: 197 QCIKTLTGHDHNVSSVAFLPSGDFLVSASRDKTIKMWEVSTGYCTKTFIGHTEWIRSVRP 256
Query: 151 TPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDF--HPL-----------EF 197
+P+G + S D+ +++W + + + + HE + I + HP
Sbjct: 257 SPEGNLLASCSNDHTIRIWSVESRECQVVLRGHEHVVECIAWASHPQNLNSLPSSMNSSL 316
Query: 198 LLATGSADRTVKFWDLET----FELIGSTRPEVTGVHAITFHPDGRTLFSGFDDN-LKVY 252
LL +GS DRT++FWD+ F LIG V + FHP GR L S DD ++V+
Sbjct: 317 LLVSGSRDRTIRFWDVNIGICLFVLIGHD----NWVRQLVFHPHGRLLLSASDDKTIRVW 372
Query: 253 SWEPVICHDSVD 264
+ CH +++
Sbjct: 373 DLKNRRCHKTLN 384
Score = 110 bits (275), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 59/174 (33%), Positives = 89/174 (51%)
Query: 44 AIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNC 103
AI +P A +L G SP+ V F + ++ + IK+WD E + TL GH +
Sbjct: 108 AIPRPPAKFTLTGHRSPITRVLFHPHYNVFVSASEDASIKVWDYETGEFEHTLKGHTDSV 167
Query: 104 TAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFD 163
V F P G+F AS D +K+WD CI T GH ++++ F P G ++VS D
Sbjct: 168 QDVAFDPSGKFLASCSADMQVKLWDFTIYQCIKTLTGHDHNVSSVAFLPSGDFLVSASRD 227
Query: 164 NVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFE 217
+K+W+++ G F H IRS+ P LLA+ S D T++ W +E+ E
Sbjct: 228 KTIKMWEVSTGYCTKTFIGHTEWIRSVRPSPEGNLLASCSNDHTIRIWSVESRE 281
Score = 87.8 bits (216), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 86/199 (43%), Gaps = 13/199 (6%)
Query: 29 RFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLE 88
+FL + D +V LW + +L G V SVAF + +++ + IK+W++
Sbjct: 177 KFLASCSADMQVKLWDFTIYQCIKTLTGHDHNVSSVAFLPSGDFLVSASRDKTIKMWEVS 236
Query: 89 ESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTI 148
+T GH +V P G AS D ++IW + + C +GH + I
Sbjct: 237 TGYCTKTFIGHTEWIRSVRPSPEGNLLASCSNDHTIRIWSVESRECQVVLRGHEHVVECI 296
Query: 149 RFTP-------------DGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPL 195
+ +VSG D ++ WD+ G L H+ +R + FHP
Sbjct: 297 AWASHPQNLNSLPSSMNSSLLLVSGSRDRTIRFWDVNIGICLFVLIGHDNWVRQLVFHPH 356
Query: 196 EFLLATGSADRTVKFWDLE 214
LL + S D+T++ WDL+
Sbjct: 357 GRLLLSASDDKTIRVWDLK 375
Score = 77.8 bits (190), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 50/218 (22%), Positives = 89/218 (40%), Gaps = 14/218 (6%)
Query: 8 LQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFD 67
++ H NV+ ++ FL++ D+ + +W + + G + + SV
Sbjct: 199 IKTLTGHDHNVSSVAFLPSG-DFLVSASRDKTIKMWEVSTGYCTKTFIGHTEWIRSVRPS 257
Query: 68 SAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKS--NCTAVEFHP-----------FGEF 114
L+ + ++ I++W +E + L GH+ C A HP
Sbjct: 258 PEGNLLASCSNDHTIRIWSVESRECQVVLRGHEHVVECIAWASHPQNLNSLPSSMNSSLL 317
Query: 115 FASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAG 174
SG D ++ WD+ C+ GH + + F P GR ++S D ++VWDL
Sbjct: 318 LVSGSRDRTIRFWDVNIGICLFVLIGHDNWVRQLVFHPHGRLLLSASDDKTIRVWDLKNR 377
Query: 175 KLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWD 212
+ H + S+D + L TGS D+T+ WD
Sbjct: 378 RCHKTLNAHSHFVTSLDVNRLAPYAITGSVDQTIHIWD 415
Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 51/119 (42%), Gaps = 1/119 (0%)
Query: 137 TYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLE 196
T GH I + F P VS D +KVWD G+ H K H ++ + F P
Sbjct: 117 TLTGHRSPITRVLFHPHYNVFVSASEDASIKVWDYETGEFEHTLKGHTDSVQDVAFDPSG 176
Query: 197 FLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGFDDNLKVYSWE 255
LA+ SAD VK WD ++ I + V ++ F P G L S D + WE
Sbjct: 177 KFLASCSADMQVKLWDFTIYQCIKTLTGHDHNVSSVAFLPSGDFLVSASRDK-TIKMWE 234
Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 56/120 (46%)
Query: 11 FVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAE 70
+ +H N+N + + L++G D+ + W + L L G + V + F
Sbjct: 298 WASHPQNLNSLPSSMNSSLLLVSGSRDRTIRFWDVNIGICLFVLIGHDNWVRQLVFHPHG 357
Query: 71 VLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIR 130
L+L+ + I++WDL+ + +TL H T+++ + + +G +D + IWD R
Sbjct: 358 RLLLSASDDKTIRVWDLKNRRCHKTLNAHSHFVTSLDVNRLAPYAITGSVDQTIHIWDCR 417
>sp|O76734|TUP1_DICDI General transcriptional corepressor tupA OS=Dictyostelium
discoideum GN=tupA PE=2 SV=1
Length = 579
Score = 120 bits (302), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 67/204 (32%), Positives = 98/204 (48%), Gaps = 9/204 (4%)
Query: 61 VDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCM 120
+ SV F + GA +K+WD+ K+ T GH+ + ++++ G F SG
Sbjct: 330 IRSVCFSPDGNYLATGAEDKTVKVWDIHTKKIQHTFYGHELDIYSLDYSSDGRFIVSGSG 389
Query: 121 DTNLKIWDIRKKGCIHTYK----GHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKL 176
D KIWDI K C T G G+ ++ +PDGR V +G DN+V++WD G
Sbjct: 390 DKKAKIWDIEKGKCAFTLGNEEVGPKNGVTSVAMSPDGRLVAAGSLDNIVRLWDAQTGYF 449
Query: 177 LHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTG----VHAI 232
L ++ H + S+ F P LA+GS D+++K WDL R G V ++
Sbjct: 450 LERYEGHLDSVYSVAFSPDGKSLASGSLDKSLKLWDLSGSRSRSRCRATFNGHKDFVLSV 509
Query: 233 TFHPDGRTLFSGFDDNLKVYSWEP 256
F PDG L SG D V W+P
Sbjct: 510 AFSPDGSWLISGSKDR-SVQFWDP 532
Score = 111 bits (277), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 64/221 (28%), Positives = 108/221 (48%), Gaps = 14/221 (6%)
Query: 5 GYKLQEFVAHSANVNCISIGKKAC-----RFLITGGDDQKVNLWAIGKPTALMSLCGLSS 59
G K+ FV S + I + C +L TG +D+ V +W I + G
Sbjct: 312 GKKVHAFVDESEKDGDLYI-RSVCFSPDGNYLATGAEDKTVKVWDIHTKKIQHTFYGHEL 370
Query: 60 PVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTL----TGHKSNCTAVEFHPFGEFF 115
+ S+ + S +++G+ K+WD+E+ K TL G K+ T+V P G
Sbjct: 371 DIYSLDYSSDGRFIVSGSGDKKAKIWDIEKGKCAFTLGNEEVGPKNGVTSVAMSPDGRLV 430
Query: 116 ASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGK 175
A+G +D +++WD + + Y+GH + ++ F+PDG+ + SG D +K+WDL+ +
Sbjct: 431 AAGSLDNIVRLWDAQTGYFLERYEGHLDSVYSVAFSPDGKSLASGSLDKSLKLWDLSGSR 490
Query: 176 LLHD----FKFHEGHIRSIDFHPLEFLLATGSADRTVKFWD 212
F H+ + S+ F P L +GS DR+V+FWD
Sbjct: 491 SRSRCRATFNGHKDFVLSVAFSPDGSWLISGSKDRSVQFWD 531
Score = 107 bits (267), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 61/216 (28%), Positives = 100/216 (46%), Gaps = 12/216 (5%)
Query: 11 FVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSL----CGLSSPVDSVAF 66
F H ++ + RF+++G D+K +W I K +L G + V SVA
Sbjct: 365 FYGHELDIYSLDYSSDG-RFIVSGSGDKKAKIWDIEKGKCAFTLGNEEVGPKNGVTSVAM 423
Query: 67 DSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKI 126
LV AG+ +++LWD + + GH + +V F P G+ ASG +D +LK+
Sbjct: 424 SPDGRLVAAGSLDNIVRLWDAQTGYFLERYEGHLDSVYSVAFSPDGKSLASGSLDKSLKL 483
Query: 127 WDIRKKGCIH----TYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKF 182
WD+ T+ GH + ++ F+PDG W++SG D V+ WD G +
Sbjct: 484 WDLSGSRSRSRCRATFNGHKDFVLSVAFSPDGSWLISGSKDRSVQFWDPRNGTTHMMLQG 543
Query: 183 HEGHIRSIDFHPL---EFLLATGSADRTVKFWDLET 215
H+ + S+ P + ATGS D + W ++
Sbjct: 544 HKNSVISVALSPKNNSHGVFATGSGDFRSRLWKYDS 579
Score = 101 bits (251), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 57/190 (30%), Positives = 91/190 (47%), Gaps = 10/190 (5%)
Query: 73 VLAGASTGVIKLWDLEESKMVRTLTGHKSN-----CTAVEFHPFGEFFASGCMDTNLKIW 127
LA +++D++ K V +V F P G + A+G D +K+W
Sbjct: 295 YLATGCNRSAQIYDVDTGKKVHAFVDESEKDGDLYIRSVCFSPDGNYLATGAEDKTVKVW 354
Query: 128 DIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHE--- 184
DI K HT+ GH I ++ ++ DGR++VSG D K+WD+ GK E
Sbjct: 355 DIHTKKIQHTFYGHELDIYSLDYSSDGRFIVSGSGDKKAKIWDIEKGKCAFTLGNEEVGP 414
Query: 185 -GHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFS 243
+ S+ P L+A GS D V+ WD +T + + V+++ F PDG++L S
Sbjct: 415 KNGVTSVAMSPDGRLVAAGSLDNIVRLWDAQTGYFLERYEGHLDSVYSVAFSPDGKSLAS 474
Query: 244 G-FDDNLKVY 252
G D +LK++
Sbjct: 475 GSLDKSLKLW 484
>sp|Q8BHD1|POC1B_MOUSE POC1 centriolar protein homolog B OS=Mus musculus GN=Poc1b PE=1
SV=1
Length = 476
Score = 120 bits (300), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 73/257 (28%), Positives = 113/257 (43%), Gaps = 5/257 (1%)
Query: 4 RGYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDS 63
R Y+ +V H V + + L + D+ V LW + + ++PV S
Sbjct: 52 RAYR---YVGHKDVVTSLQFSPQG-NLLASASRDRTVRLWVLDRKGKSSEFKAHTAPVRS 107
Query: 64 VAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTN 123
V F + L++ + IK+W + + + +L H +F P G S D
Sbjct: 108 VDFSADGQLLVTASEDKSIKVWSMFRQRFLYSLYRHTHWVRCAKFSPDGRLIVSCSEDKT 167
Query: 124 LKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFH 183
+KIWD K C++ + N + F P+G + S G D+ VK+WD+ KLL ++ H
Sbjct: 168 IKIWDTTNKQCVNNFSDSVGFANFVDFNPNGTCIASAGSDHAVKIWDIRMNKLLQHYQVH 227
Query: 184 EGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFS 243
+ + FHPL L T S+D TVK DL LI + + V ++F DG L S
Sbjct: 228 SCGVNCLSFHPLGNSLVTASSDGTVKMLDLIEGRLIYTLQGHTGPVFTVSFSKDGELLTS 287
Query: 244 GFDDNLKVYSWEPVICH 260
G D +V W H
Sbjct: 288 GGADA-QVLIWRTNFIH 303
Score = 106 bits (265), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 57/239 (23%), Positives = 109/239 (45%), Gaps = 1/239 (0%)
Query: 9 QEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDS 68
+ F H A + C+ + T D + LW++ G V S+ F
Sbjct: 12 RSFKGHKAAITSADFSPN-CKQIATASWDTFLMLWSLKPHARAYRYVGHKDVVTSLQFSP 70
Query: 69 AEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWD 128
L+ + + ++LW L+ H + +V+F G+ + D ++K+W
Sbjct: 71 QGNLLASASRDRTVRLWVLDRKGKSSEFKAHTAPVRSVDFSADGQLLVTASEDKSIKVWS 130
Query: 129 IRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIR 188
+ ++ +++ HT + +F+PDGR +VS D +K+WD T + +++F G
Sbjct: 131 MFRQRFLYSLYRHTHWVRCAKFSPDGRLIVSCSEDKTIKIWDTTNKQCVNNFSDSVGFAN 190
Query: 189 SIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGFDD 247
+DF+P +A+ +D VK WD+ +L+ + GV+ ++FHP G +L + D
Sbjct: 191 FVDFNPNGTCIASAGSDHAVKIWDIRMNKLLQHYQVHSCGVNCLSFHPLGNSLVTASSD 249
Score = 93.6 bits (231), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 85/172 (49%), Gaps = 1/172 (0%)
Query: 82 IKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGH 141
+ LW L+ GHK T+++F P G AS D +++W + +KG +K H
Sbjct: 42 LMLWSLKPHARAYRYVGHKDVVTSLQFSPQGNLLASASRDRTVRLWVLDRKGKSSEFKAH 101
Query: 142 TRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLAT 201
T + ++ F+ DG+ +V+ D +KVW + + L+ H +R F P L+ +
Sbjct: 102 TAPVRSVDFSADGQLLVTASEDKSIKVWSMFRQRFLYSLYRHTHWVRCAKFSPDGRLIVS 161
Query: 202 GSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFS-GFDDNLKVY 252
S D+T+K WD + + + V + + F+P+G + S G D +K++
Sbjct: 162 CSEDKTIKIWDTTNKQCVNNFSDSVGFANFVDFNPNGTCIASAGSDHAVKIW 213
Score = 91.3 bits (225), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 82/167 (49%), Gaps = 1/167 (0%)
Query: 87 LEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGIN 146
LE+ + R+ GHK+ T+ +F P + A+ DT L +W ++ + Y GH +
Sbjct: 5 LEDPILERSFKGHKAAITSADFSPNCKQIATASWDTFLMLWSLKPHARAYRYVGHKDVVT 64
Query: 147 TIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADR 206
+++F+P G + S D V++W L +FK H +RS+DF LL T S D+
Sbjct: 65 SLQFSPQGNLLASASRDRTVRLWVLDRKGKSSEFKAHTAPVRSVDFSADGQLLVTASEDK 124
Query: 207 TVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGFDDN-LKVY 252
++K W + + S V F PDGR + S +D +K++
Sbjct: 125 SIKVWSMFRQRFLYSLYRHTHWVRCAKFSPDGRLIVSCSEDKTIKIW 171
>sp|Q15542|TAF5_HUMAN Transcription initiation factor TFIID subunit 5 OS=Homo sapiens
GN=TAF5 PE=1 SV=3
Length = 800
Score = 118 bits (296), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 61/216 (28%), Positives = 107/216 (49%), Gaps = 2/216 (0%)
Query: 3 KRGYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVD 62
K +L+ HS V S +L++ +D V LW++ T L+ G + PV
Sbjct: 531 KTASELKILYGHSGPVYGASFSPDR-NYLLSSSEDGTVRLWSLQTFTCLVGYKGHNYPVW 589
Query: 63 SVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDT 122
F ++G V +LW + + +R GH ++ FHP + A+G D
Sbjct: 590 DTQFSPYGYYFVSGGHDRVARLWATDHYQPLRIFAGHLADVNCTRFHPNSNYVATGSADR 649
Query: 123 NLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKF 182
+++WD+ C+ + GH I+++ F+P+GR++ +G D V +WD+ G ++ + K
Sbjct: 650 TVRLWDVLNGNCVRIFTGHKGPIHSLTFSPNGRFLATGATDGRVLLWDIGHGLMVGELKG 709
Query: 183 HEGHIRSIDFHPLEFLLATGSADRTVKFWD-LETFE 217
H + S+ F +LA+GS D TV+ WD ++ FE
Sbjct: 710 HTDTVCSLRFSRDGEILASGSMDNTVRLWDAIKAFE 745
Score = 113 bits (282), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 62/214 (28%), Positives = 99/214 (46%), Gaps = 1/214 (0%)
Query: 51 LMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHP 110
L L G S PV +F +L+ + G ++LW L+ + GH +F P
Sbjct: 536 LKILYGHSGPVYGASFSPDRNYLLSSSEDGTVRLWSLQTFTCLVGYKGHNYPVWDTQFSP 595
Query: 111 FGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWD 170
+G +F SG D ++W + + GH +N RF P+ +V +G D V++WD
Sbjct: 596 YGYYFVSGGHDRVARLWATDHYQPLRIFAGHLADVNCTRFHPNSNYVATGSADRTVRLWD 655
Query: 171 LTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVH 230
+ G + F H+G I S+ F P LATG+ D V WD+ ++G + V
Sbjct: 656 VLNGNCVRIFTGHKGPIHSLTFSPNGRFLATGATDGRVLLWDIGHGLMVGELKGHTDTVC 715
Query: 231 AITFHPDGRTLFSGFDDNLKVYSWEPVICHDSVD 264
++ F DG L SG DN V W+ + + ++
Sbjct: 716 SLRFSRDGEILASGSMDN-TVRLWDAIKAFEDLE 748
Score = 102 bits (253), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 81/277 (29%), Positives = 125/277 (45%), Gaps = 32/277 (11%)
Query: 31 LITGG-DDQKVNLWAIGKPTALMSLCGLS--SPVDSVAFDSAEVLVLAGASTGVIKLWDL 87
LI GG D V +W++ P L S+ S S +D + D E ++ D
Sbjct: 484 LIAGGFADSTVRVWSV-TPKKLRSVKQASDLSLIDKESDDVLE------------RIMDE 530
Query: 88 EESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINT 147
+ + ++ L GH F P + S D +++W ++ C+ YKGH +
Sbjct: 531 KTASELKILYGHSGPVYGASFSPDRNYLLSSSEDGTVRLWSLQTFTCLVGYKGHNYPVWD 590
Query: 148 IRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRT 207
+F+P G + VSGG D V ++W + L F H + FHP +ATGSADRT
Sbjct: 591 TQFSPYGYYFVSGGHDRVARLWATDHYQPLRIFAGHLADVNCTRFHPNSNYVATGSADRT 650
Query: 208 VKFWDLETFELIGSTRPEVTG----VHAITFHPDGRTLFSGFDDNLKVYSWEPVICHDSV 263
V+ WD+ L G+ TG +H++TF P+GR L +G D +V W+ I H +
Sbjct: 651 VRLWDV----LNGNCVRIFTGHKGPIHSLTFSPNGRFLATGATDG-RVLLWD--IGHGLM 703
Query: 264 DMGWSTLGDLCIN-----DGKLLGCSFYRNSVGIWVA 295
D + DG++L N+V +W A
Sbjct: 704 VGELKGHTDTVCSLRFSRDGEILASGSMDNTVRLWDA 740
Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 50/147 (34%), Gaps = 31/147 (21%)
Query: 134 CIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKL----------------- 176
C +T+ +G+ + T D + G D+ V+VW +T KL
Sbjct: 462 CFYTFLNAYQGLTAVDVTDDSSLIAGGFADSTVRVWSVTPKKLRSVKQASDLSLIDKESD 521
Query: 177 --------------LHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGST 222
L H G + F P L + S D TV+ W L+TF +
Sbjct: 522 DVLERIMDEKTASELKILYGHSGPVYGASFSPDRNYLLSSSEDGTVRLWSLQTFTCLVGY 581
Query: 223 RPEVTGVHAITFHPDGRTLFSGFDDNL 249
+ V F P G SG D +
Sbjct: 582 KGHNYPVWDTQFSPYGYYFVSGGHDRV 608
>sp|A2CEH0|POC1B_DANRE POC1 centriolar protein homolog B OS=Danio rerio GN=poc1b PE=2 SV=1
Length = 490
Score = 118 bits (295), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 62/201 (30%), Positives = 99/201 (49%), Gaps = 1/201 (0%)
Query: 11 FVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAE 70
F AH+A+V + + R L+T DD+ V +W + + L SL ++ V F
Sbjct: 98 FKAHTASVRSVHFSRDGQR-LVTASDDKSVKVWGVERKKFLYSLNRHTNWVRCARFSPDG 156
Query: 71 VLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIR 130
L+ + ++LWD + + T + + T V+F+ G AS D +KIWDIR
Sbjct: 157 RLIASCGDDRTVRLWDTSSHQCINIFTDYGGSATFVDFNSSGTCIASSGADNTIKIWDIR 216
Query: 131 KKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSI 190
I YK H G+N F P G +++SG D+ +K+ DL G+L++ H+G + ++
Sbjct: 217 TNKLIQHYKVHNAGVNCFSFHPSGNYLISGSSDSTIKILDLLEGRLIYTLHGHKGPVLTV 276
Query: 191 DFHPLEFLLATGSADRTVKFW 211
F L A+G AD V W
Sbjct: 277 TFSRDGDLFASGGADSQVLMW 297
Score = 112 bits (280), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 61/240 (25%), Positives = 111/240 (46%), Gaps = 1/240 (0%)
Query: 9 QEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDS 68
+ F H ++C + L TG D+ + +W + G + + V F
Sbjct: 12 RHFKGHKDVISCADFNPNN-KQLATGSCDKSLMIWNLAPKARAFRFVGHTDVITGVNFAP 70
Query: 69 AEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWD 128
+ LV + + ++LW H ++ +V F G+ + D ++K+W
Sbjct: 71 SGSLVASSSRDQTVRLWTPSIKGESTVFKAHTASVRSVHFSRDGQRLVTASDDKSVKVWG 130
Query: 129 IRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIR 188
+ +K +++ HT + RF+PDGR + S G D V++WD ++ + ++ F + G
Sbjct: 131 VERKKFLYSLNRHTNWVRCARFSPDGRLIASCGDDRTVRLWDTSSHQCINIFTDYGGSAT 190
Query: 189 SIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGFDDN 248
+DF+ +A+ AD T+K WD+ T +LI + GV+ +FHP G L SG D+
Sbjct: 191 FVDFNSSGTCIASSGADNTIKIWDIRTNKLIQHYKVHNAGVNCFSFHPSGNYLISGSSDS 250
Score = 103 bits (258), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 64/245 (26%), Positives = 103/245 (42%), Gaps = 2/245 (0%)
Query: 11 FVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAE 70
FV H+ + ++ + + DQ V LW ++ V SV F
Sbjct: 56 FVGHTDVITGVNFAPSGS-LVASSSRDQTVRLWTPSIKGESTVFKAHTASVRSVHFSRDG 114
Query: 71 VLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIR 130
++ + +K+W +E K + +L H + F P G AS D +++WD
Sbjct: 115 QRLVTASDDKSVKVWGVERKKFLYSLNRHTNWVRCARFSPDGRLIASCGDDRTVRLWDTS 174
Query: 131 KKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSI 190
CI+ + + + F G + S G DN +K+WD+ KL+ +K H +
Sbjct: 175 SHQCINIFTDYGGSATFVDFNSSGTCIASSGADNTIKIWDIRTNKLIQHYKVHNAGVNCF 234
Query: 191 DFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGFDDNLK 250
FHP L +GS+D T+K DL LI + V +TF DG SG D+ +
Sbjct: 235 SFHPSGNYLISGSSDSTIKILDLLEGRLIYTLHGHKGPVLTVTFSRDGDLFASGGADS-Q 293
Query: 251 VYSWE 255
V W+
Sbjct: 294 VLMWK 298
Score = 86.3 bits (212), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 61/212 (28%), Positives = 94/212 (44%), Gaps = 8/212 (3%)
Query: 87 LEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGIN 146
+E+ + R GHK + +F+P + A+G D +L IW++ K + GHT I
Sbjct: 5 MEDPTLERHFKGHKDVISCADFNPNNKQLATGSCDKSLMIWNLAPKARAFRFVGHTDVIT 64
Query: 147 TIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADR 206
+ F P G V S D V++W + FK H +RS+ F L T S D+
Sbjct: 65 GVNFAPSGSLVASSSRDQTVRLWTPSIKGESTVFKAHTASVRSVHFSRDGQRLVTASDDK 124
Query: 207 TVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGFDDNLKVYSWEPVICHDSVDM- 265
+VK W +E + + S V F PDGR + S DD V W+ H +++
Sbjct: 125 SVKVWGVERKKFLYSLNRHTNWVRCARFSPDGRLIASCGDDR-TVRLWD-TSSHQCINIF 182
Query: 266 ----GWSTLGDLCINDGKLLGCSFYRNSVGIW 293
G +T D + G + S N++ IW
Sbjct: 183 TDYGGSATFVDFN-SSGTCIASSGADNTIKIW 213
Score = 85.5 bits (210), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 86/206 (41%), Gaps = 1/206 (0%)
Query: 48 PTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVE 107
PT G + F+ + G+ + +W+L GH T V
Sbjct: 8 PTLERHFKGHKDVISCADFNPNNKQLATGSCDKSLMIWNLAPKARAFRFVGHTDVITGVN 67
Query: 108 FHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVK 167
F P G AS D +++W KG +K HT + ++ F+ DG+ +V+ D VK
Sbjct: 68 FAPSGSLVASSSRDQTVRLWTPSIKGESTVFKAHTASVRSVHFSRDGQRLVTASDDKSVK 127
Query: 168 VWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVT 227
VW + K L+ H +R F P L+A+ DRTV+ WD + + I
Sbjct: 128 VWGVERKKFLYSLNRHTNWVRCARFSPDGRLIASCGDDRTVRLWDTSSHQCINIFTDYGG 187
Query: 228 GVHAITFHPDGRTLF-SGFDDNLKVY 252
+ F+ G + SG D+ +K++
Sbjct: 188 SATFVDFNSSGTCIASSGADNTIKIW 213
Score = 38.9 bits (89), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Query: 8 LQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFD 67
+Q + H+A VNC S + +LI+G D + + + + + +L G PV +V F
Sbjct: 221 IQHYKVHNAGVNCFSF-HPSGNYLISGSSDSTIKILDLLEGRLIYTLHGHKGPVLTVTFS 279
Query: 68 SAEVLVLAGASTGVIKLW 85
L +G + + +W
Sbjct: 280 RDGDLFASGGADSQVLMW 297
>sp|Q8C092|TAF5_MOUSE Transcription initiation factor TFIID subunit 5 OS=Mus musculus
GN=Taf5 PE=2 SV=1
Length = 801
Score = 117 bits (294), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 60/216 (27%), Positives = 107/216 (49%), Gaps = 2/216 (0%)
Query: 3 KRGYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVD 62
K +L+ HS V S +L++ +D V LW++ T L+ G + PV
Sbjct: 532 KTASELKILYGHSGPVYGASFSPDR-NYLLSSSEDGTVRLWSLQTFTCLVGYKGHNYPVW 590
Query: 63 SVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDT 122
F ++G V +LW + + +R GH ++ +HP + A+G D
Sbjct: 591 DTQFSPYGYYFVSGGHDRVARLWATDHYQPLRIFAGHLADVNCTRYHPNSNYVATGSADR 650
Query: 123 NLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKF 182
+++WD+ C+ + GH I+++ F+P+GR++ +G D V +WD+ G ++ + K
Sbjct: 651 TVRLWDVLNGNCVRIFTGHKGPIHSLTFSPNGRFLATGATDGRVLLWDIGHGLMVGELKG 710
Query: 183 HEGHIRSIDFHPLEFLLATGSADRTVKFWD-LETFE 217
H + S+ F +LA+GS D TV+ WD ++ FE
Sbjct: 711 HTDTVCSLRFSRDGEILASGSMDNTVRLWDAVKAFE 746
Score = 113 bits (282), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 62/214 (28%), Positives = 99/214 (46%), Gaps = 1/214 (0%)
Query: 51 LMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHP 110
L L G S PV +F +L+ + G ++LW L+ + GH +F P
Sbjct: 537 LKILYGHSGPVYGASFSPDRNYLLSSSEDGTVRLWSLQTFTCLVGYKGHNYPVWDTQFSP 596
Query: 111 FGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWD 170
+G +F SG D ++W + + GH +N R+ P+ +V +G D V++WD
Sbjct: 597 YGYYFVSGGHDRVARLWATDHYQPLRIFAGHLADVNCTRYHPNSNYVATGSADRTVRLWD 656
Query: 171 LTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVH 230
+ G + F H+G I S+ F P LATG+ D V WD+ ++G + V
Sbjct: 657 VLNGNCVRIFTGHKGPIHSLTFSPNGRFLATGATDGRVLLWDIGHGLMVGELKGHTDTVC 716
Query: 231 AITFHPDGRTLFSGFDDNLKVYSWEPVICHDSVD 264
++ F DG L SG DN V W+ V + ++
Sbjct: 717 SLRFSRDGEILASGSMDN-TVRLWDAVKAFEDLE 749
Score = 101 bits (252), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 80/277 (28%), Positives = 125/277 (45%), Gaps = 32/277 (11%)
Query: 31 LITGG-DDQKVNLWAIGKPTALMSLCGLS--SPVDSVAFDSAEVLVLAGASTGVIKLWDL 87
LI GG D V +W++ P L S+ S S +D + D E ++ D
Sbjct: 485 LIAGGFADSTVRVWSV-TPKKLRSVKQASDLSLIDKESDDVLE------------RIMDE 531
Query: 88 EESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINT 147
+ + ++ L GH F P + S D +++W ++ C+ YKGH +
Sbjct: 532 KTASELKILYGHSGPVYGASFSPDRNYLLSSSEDGTVRLWSLQTFTCLVGYKGHNYPVWD 591
Query: 148 IRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRT 207
+F+P G + VSGG D V ++W + L F H + +HP +ATGSADRT
Sbjct: 592 TQFSPYGYYFVSGGHDRVARLWATDHYQPLRIFAGHLADVNCTRYHPNSNYVATGSADRT 651
Query: 208 VKFWDLETFELIGSTRPEVTG----VHAITFHPDGRTLFSGFDDNLKVYSWEPVICHDSV 263
V+ WD+ L G+ TG +H++TF P+GR L +G D +V W+ I H +
Sbjct: 652 VRLWDV----LNGNCVRIFTGHKGPIHSLTFSPNGRFLATGATDG-RVLLWD--IGHGLM 704
Query: 264 DMGWSTLGDLCIN-----DGKLLGCSFYRNSVGIWVA 295
D + DG++L N+V +W A
Sbjct: 705 VGELKGHTDTVCSLRFSRDGEILASGSMDNTVRLWDA 741
Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 50/147 (34%), Gaps = 31/147 (21%)
Query: 134 CIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKL----------------- 176
C +T+ +G+ + T D + G D+ V+VW +T KL
Sbjct: 463 CFYTFLNAYQGLTAVDVTDDSSLIAGGFADSTVRVWSVTPKKLRSVKQASDLSLIDKESD 522
Query: 177 --------------LHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGST 222
L H G + F P L + S D TV+ W L+TF +
Sbjct: 523 DVLERIMDEKTASELKILYGHSGPVYGASFSPDRNYLLSSSEDGTVRLWSLQTFTCLVGY 582
Query: 223 RPEVTGVHAITFHPDGRTLFSGFDDNL 249
+ V F P G SG D +
Sbjct: 583 KGHNYPVWDTQFSPYGYYFVSGGHDRV 609
>sp|Q75BY3|PRP46_ASHGO Pre-mRNA-splicing factor PRP46 OS=Ashbya gossypii (strain ATCC
10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=PRP46
PE=3 SV=2
Length = 425
Score = 117 bits (292), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 118/243 (48%), Gaps = 4/243 (1%)
Query: 6 YKLQEFV-AHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSV 64
+KL + H+ V C+ + + TG +D + +W + ++L G V +
Sbjct: 103 WKLTRVINGHTGWVRCVCVDPVDNAWFATGSNDSTIRVWDLATGKLKVTLQGHIMTVRDI 162
Query: 65 AFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNL 124
+ + + + ++K WDLE + +VR G S +V+ HP + S D+ +
Sbjct: 163 CISARHPYMFSASQDKLVKCWDLERNTVVRDFHGTLSGVHSVDLHPSLDLIVSAGRDSVV 222
Query: 125 KIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHE 184
++WDIR + C+ T GH IN +R P +VS D VK+WDL AGK + H+
Sbjct: 223 RVWDIRSRSCVLTLAGHRGPINKVRCLPVDPQIVSCSTDATVKLWDLVAGKPMKTLTHHK 282
Query: 185 GHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTG-VHAITFHPDGRTLFS 243
++R + F+P EF A+ D ++ W L +L+ + E G V+ + + DG LF+
Sbjct: 283 RNVRDLAFNPTEFSFASACTD-DIRSWKLVDGQLLTNFNSEALGIVNTLACNQDG-VLFA 340
Query: 244 GFD 246
G D
Sbjct: 341 GGD 343
Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/207 (26%), Positives = 95/207 (45%), Gaps = 17/207 (8%)
Query: 55 CGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGH----KSNCTAVEFHP 110
C PVD+ F + G++ I++WDL K+ TL GH + C + HP
Sbjct: 118 CVCVDPVDNAWFAT-------GSNDSTIRVWDLATGKLKVTLQGHIMTVRDICISAR-HP 169
Query: 111 FGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWD 170
+ S D +K WD+ + + + G G++++ P +VS G D+VV+VWD
Sbjct: 170 Y---MFSASQDKLVKCWDLERNTVVRDFHGTLSGVHSVDLHPSLDLIVSAGRDSVVRVWD 226
Query: 171 LTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVH 230
+ + + H G I + P++ + + S D TVK WDL + + + V
Sbjct: 227 IRSRSCVLTLAGHRGPINKVRCLPVDPQIVSCSTDATVKLWDLVAGKPMKTLTHHKRNVR 286
Query: 231 AITFHPDGRTLFSGFDDNLKVYSWEPV 257
+ F+P + S D+++ SW+ V
Sbjct: 287 DLAFNPTEFSFASACTDDIR--SWKLV 311
>sp|F6ZT52|POC1B_XENTR POC1 centriolar protein homolog B OS=Xenopus tropicalis GN=poc1b
PE=2 SV=1
Length = 470
Score = 117 bits (292), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 80/255 (31%), Positives = 111/255 (43%), Gaps = 11/255 (4%)
Query: 4 RGYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDS 63
R YK + H V C+ + + D+ V LWA L ++ V
Sbjct: 52 RAYK---YPGHKEAVTCVQFSPSG-HLVASSSKDRTVRLWAPNIKGESSVLKAHTAVVRC 107
Query: 64 VAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTN 123
V F S + + IK W+L + + +LT H + F P G AS D
Sbjct: 108 VNFSSDGHTFITASDDKSIKAWNLHRQRFLYSLTEHTNWVRCARFSPDGRLIASCSDDKT 167
Query: 124 LKIWDIRKKGCIHT---YKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDF 180
++IWDI + CI+T YKGH+ N + F P G V S G D+ VKVWD+ KLL +
Sbjct: 168 VRIWDITNRLCINTFVDYKGHS---NYVDFNPMGTCVASAGVDSTVKVWDIRTNKLLQHY 224
Query: 181 KFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRT 240
+ H + S+ FHP L T S D TVK DL LI + V ++ F G
Sbjct: 225 QVHNAGVNSLSFHPSGNYLLTASNDGTVKILDLLEGRLIYTLHGHQGPVLSVAFSKSGDQ 284
Query: 241 LFSGFDDNLKVYSWE 255
SG D +V W+
Sbjct: 285 FASGATD-AQVLVWK 298
Score = 110 bits (274), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 58/217 (26%), Positives = 102/217 (47%)
Query: 31 LITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEES 90
L + D V +W + G V V F + LV + + ++LW
Sbjct: 33 LASSSADACVMIWNFKPQSRAYKYPGHKEAVTCVQFSPSGHLVASSSKDRTVRLWAPNIK 92
Query: 91 KMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRF 150
L H + V F G F + D ++K W++ ++ +++ HT + RF
Sbjct: 93 GESSVLKAHTAVVRCVNFSSDGHTFITASDDKSIKAWNLHRQRFLYSLTEHTNWVRCARF 152
Query: 151 TPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKF 210
+PDGR + S D V++WD+T ++ F ++GH +DF+P+ +A+ D TVK
Sbjct: 153 SPDGRLIASCSDDKTVRIWDITNRLCINTFVDYKGHSNYVDFNPMGTCVASAGVDSTVKV 212
Query: 211 WDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGFDD 247
WD+ T +L+ + GV++++FHP G L + +D
Sbjct: 213 WDIRTNKLLQHYQVHNAGVNSLSFHPSGNYLLTASND 249
Score = 85.5 bits (210), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 88/210 (41%), Gaps = 1/210 (0%)
Query: 44 AIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNC 103
A+ P G V V F + + ++ + +W+ + GHK
Sbjct: 4 ALEDPALQRHFKGHKDAVTYVDFSPDGKQLASSSADACVMIWNFKPQSRAYKYPGHKEAV 63
Query: 104 TAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFD 163
T V+F P G AS D +++W KG K HT + + F+ DG ++ D
Sbjct: 64 TCVQFSPSGHLVASSSKDRTVRLWAPNIKGESSVLKAHTAVVRCVNFSSDGHTFITASDD 123
Query: 164 NVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTR 223
+K W+L + L+ H +R F P L+A+ S D+TV+ WD+ I +
Sbjct: 124 KSIKAWNLHRQRFLYSLTEHTNWVRCARFSPDGRLIASCSDDKTVRIWDITNRLCINTFV 183
Query: 224 PEVTGVHAITFHPDGRTLFS-GFDDNLKVY 252
+ + F+P G + S G D +KV+
Sbjct: 184 DYKGHSNYVDFNPMGTCVASAGVDSTVKVW 213
>sp|Q5JTN6|WDR38_HUMAN WD repeat-containing protein 38 OS=Homo sapiens GN=WDR38 PE=2 SV=1
Length = 314
Score = 116 bits (291), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 56/154 (36%), Positives = 82/154 (53%)
Query: 61 VDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCM 120
V+S AF ++L G+ G + W+ +++ L GH F P G FAS
Sbjct: 24 VNSSAFSPDGQMLLTGSEDGCVYGWETRSGQLLWRLGGHTGPVKFCRFSPDGHLFASASC 83
Query: 121 DTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDF 180
D +++WD+ + C+ KGH R + T+ F+PD R + SGG+D V +WD+ +G++L
Sbjct: 84 DCTVRLWDVARAKCLRVLKGHQRSVETVSFSPDSRQLASGGWDKRVMLWDVQSGQMLRLL 143
Query: 181 KFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLE 214
H I+S DF P LATGS D TV WDL
Sbjct: 144 VGHRDSIQSSDFSPTVNCLATGSWDSTVHIWDLR 177
Score = 111 bits (278), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 109/234 (46%), Gaps = 10/234 (4%)
Query: 26 KACRF------LITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGAST 79
K CRF + D V LW + + L L G V++V+F + +G
Sbjct: 67 KFCRFSPDGHLFASASCDCTVRLWDVARAKCLRVLKGHQRSVETVSFSPDSRQLASGGWD 126
Query: 80 GVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIR--KKGCIH- 136
+ LWD++ +M+R L GH+ + + +F P A+G D+ + IWD+R H
Sbjct: 127 KRVMLWDVQSGQMLRLLVGHRDSIQSSDFSPTVNCLATGSWDSTVHIWDLRMVTPAVSHQ 186
Query: 137 TYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLE 196
+GH+ I+ + ++ G + SG +D + +W T LL K H ++SI F P E
Sbjct: 187 ALEGHSANISCLCYSASGL-LASGSWDKTIHIWKPTTSSLLIQLKGHVTWVKSIAFSPDE 245
Query: 197 FLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGFDDNLK 250
LA+ R VK WD T + + + + + H F PDG+ L SG D +
Sbjct: 246 LWLASAGYSRMVKVWDCNTGKCLETLKGVLDVAHTCAFTPDGKILVSGAADQTR 299
Score = 102 bits (253), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 71/249 (28%), Positives = 112/249 (44%), Gaps = 4/249 (1%)
Query: 7 KLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAF 66
+++ F H VN + + L+TG +D V W L L G + PV F
Sbjct: 13 RVKFFGQHGGEVNSSAFSPDG-QMLLTGSEDGCVYGWETRSGQLLWRLGGHTGPVKFCRF 71
Query: 67 DSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKI 126
L + + ++LWD+ +K +R L GH+ + V F P ASG D + +
Sbjct: 72 SPDGHLFASASCDCTVRLWDVARAKCLRVLKGHQRSVETVSFSPDSRQLASGGWDKRVML 131
Query: 127 WDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGH 186
WD++ + GH I + F+P + +G +D+ V +WDL + EGH
Sbjct: 132 WDVQSGQMLRLLVGHRDSIQSSDFSPTVNCLATGSWDSTVHIWDLRMVTPAVSHQALEGH 191
Query: 187 IRSID--FHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFS- 243
+I + LLA+GS D+T+ W T L+ + VT V +I F PD L S
Sbjct: 192 SANISCLCYSASGLLASGSWDKTIHIWKPTTSSLLIQLKGHVTWVKSIAFSPDELWLASA 251
Query: 244 GFDDNLKVY 252
G+ +KV+
Sbjct: 252 GYSRMVKVW 260
Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 91/208 (43%), Gaps = 6/208 (2%)
Query: 91 KMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRF 150
+ V+ H + F P G+ +G D + W+ R + GHT + RF
Sbjct: 12 RRVKFFGQHGGEVNSSAFSPDGQMLLTGSEDGCVYGWETRSGQLLWRLGGHTGPVKFCRF 71
Query: 151 TPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKF 210
+PDG S D V++WD+ K L K H+ + ++ F P LA+G D+ V
Sbjct: 72 SPDGHLFASASCDCTVRLWDVARAKCLRVLKGHQRSVETVSFSPDSRQLASGGWDKRVML 131
Query: 211 WDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGFDDNLKVYSWE-----PVICHDSVDM 265
WD+++ +++ + + F P L +G D+ V+ W+ P + H +++
Sbjct: 132 WDVQSGQMLRLLVGHRDSIQSSDFSPTVNCLATGSWDS-TVHIWDLRMVTPAVSHQALEG 190
Query: 266 GWSTLGDLCINDGKLLGCSFYRNSVGIW 293
+ + LC + LL + ++ IW
Sbjct: 191 HSANISCLCYSASGLLASGSWDKTIHIW 218
>sp|O13615|PRP46_SCHPO Pre-mRNA-splicing factor prp5 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=prp5 PE=1 SV=1
Length = 473
Score = 115 bits (289), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 64/247 (25%), Positives = 120/247 (48%), Gaps = 10/247 (4%)
Query: 13 AHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVL 72
H V C+ + + ++ TG D+ + +W + ++L G + V +A
Sbjct: 161 GHLGWVRCVDV-EPGNQWFCTGAGDRTIKIWDLASGVLKLTLTGHIATVRGLAVSPRHPY 219
Query: 73 VLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKK 132
+ + ++K WDLE +K++R GH S A++ HP + + D ++WD+R +
Sbjct: 220 LFSCGEDKMVKCWDLETNKVIRHYHGHLSGVYALKLHPTLDVLVTAGRDAVARVWDMRTR 279
Query: 133 GCIHTYKGHTRGINTI---RFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRS 189
+H GH + ++ F P VV+G D+ +++WDL AGK L H+ +R+
Sbjct: 280 QNVHVLSGHKSTVASLAVQEFDPQ---VVTGSMDSTIRLWDLAAGKTLTTLTHHKKTVRA 336
Query: 190 IDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGFDD-N 248
+ HP EF A+GS+D +K W +G+ V+ ++ + D +FSG D+ +
Sbjct: 337 LSLHPDEFTFASGSSD-NIKHWKFPEGAFMGNFEGHNAIVNTLSINSD-NVMFSGADNGS 394
Query: 249 LKVYSWE 255
+ + W+
Sbjct: 395 MCFWDWK 401
Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 82/203 (40%), Gaps = 42/203 (20%)
Query: 92 MVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFT 151
++R ++GH V+ P ++F +G D +KIWD+ T GH + + +
Sbjct: 155 LMRVISGHLGWVRCVDVEPGNQWFCTGAGDRTIKIWDLASGVLKLTLTGHIATVRGLAVS 214
Query: 152 PDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHP-LEFL------------ 198
P ++ S G D +VK WDL K++ + H + ++ HP L+ L
Sbjct: 215 PRHPYLFSCGEDKMVKCWDLETNKVIRHYHGHLSGVYALKLHPTLDVLVTAGRDAVARVW 274
Query: 199 -----------------------------LATGSADRTVKFWDLETFELIGSTRPEVTGV 229
+ TGS D T++ WDL + + + V
Sbjct: 275 DMRTRQNVHVLSGHKSTVASLAVQEFDPQVVTGSMDSTIRLWDLAAGKTLTTLTHHKKTV 334
Query: 230 HAITFHPDGRTLFSGFDDNLKVY 252
A++ HPD T SG DN+K +
Sbjct: 335 RALSLHPDEFTFASGSSDNIKHW 357
>sp|Q91WQ5|TAF5L_MOUSE TAF5-like RNA polymerase II p300/CBP-associated factor-associated
factor 65 kDa subunit 5L OS=Mus musculus GN=Taf5l PE=2
SV=1
Length = 589
Score = 114 bits (286), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 56/225 (24%), Positives = 109/225 (48%), Gaps = 11/225 (4%)
Query: 31 LITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEES 90
L++ +D + W +G T + G + PV V + +G+ +LW + +
Sbjct: 357 LLSCSEDMSIRYWDLGSFTNTVLYQGHAYPVWDVDISPFSLYFASGSHDRTARLWSFDRT 416
Query: 91 KMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRF 150
+R GH ++ V+FHP + A+G D +++W ++ + + GH + ++ F
Sbjct: 417 YPLRIYAGHLADVDCVKFHPNSNYLATGSTDKTVRLWSAQQGNSVRLFTGHRGPVLSLSF 476
Query: 151 TPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKF 210
+P+G+++ S G D +K+WDL +G L + + H I S+ F P L+A+ S D +V+
Sbjct: 477 SPNGKYLASAGEDQRLKLWDLASGTLFKELRGHTDSITSLAFSPDSGLIASASMDNSVRV 536
Query: 211 WDLETF-----------ELIGSTRPEVTGVHAITFHPDGRTLFSG 244
WD+ + EL+G +++ V ++ F L +G
Sbjct: 537 WDIRSTCCNTPADGSSGELVGVYTGQMSNVLSVQFMACNLLLVTG 581
Score = 100 bits (248), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 85/184 (46%), Gaps = 11/184 (5%)
Query: 30 FLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEE 89
+ +G D+ LW+ + L G + VD V F + G++ ++LW ++
Sbjct: 398 YFASGSHDRTARLWSFDRTYPLRIYAGHLADVDCVKFHPNSNYLATGSTDKTVRLWSAQQ 457
Query: 90 SKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIR 149
VR TGH+ ++ F P G++ AS D LK+WD+ +GHT I ++
Sbjct: 458 GNSVRLFTGHRGPVLSLSFSPNGKYLASAGEDQRLKLWDLASGTLFKELRGHTDSITSLA 517
Query: 150 FTPDGRWVVSGGFDNVVKVWDL-----------TAGKLLHDFKFHEGHIRSIDFHPLEFL 198
F+PD + S DN V+VWD+ ++G+L+ + ++ S+ F L
Sbjct: 518 FSPDSGLIASASMDNSVRVWDIRSTCCNTPADGSSGELVGVYTGQMSNVLSVQFMACNLL 577
Query: 199 LATG 202
L TG
Sbjct: 578 LVTG 581
Score = 100 bits (248), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 56/217 (25%), Positives = 95/217 (43%), Gaps = 1/217 (0%)
Query: 49 TALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEF 108
T + L G PV S F + +L+ + I+ WDL GH V+
Sbjct: 333 TEMKILRGHCGPVYSTRFLADSSGLLSCSEDMSIRYWDLGSFTNTVLYQGHAYPVWDVDI 392
Query: 109 HPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKV 168
PF +FASG D ++W + + Y GH ++ ++F P+ ++ +G D V++
Sbjct: 393 SPFSLYFASGSHDRTARLWSFDRTYPLRIYAGHLADVDCVKFHPNSNYLATGSTDKTVRL 452
Query: 169 WDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTG 228
W G + F H G + S+ F P LA+ D+ +K WDL + L R
Sbjct: 453 WSAQQGNSVRLFTGHRGPVLSLSFSPNGKYLASAGEDQRLKLWDLASGTLFKELRGHTDS 512
Query: 229 VHAITFHPD-GRTLFSGFDDNLKVYSWEPVICHDSVD 264
+ ++ F PD G + D++++V+ C+ D
Sbjct: 513 ITSLAFSPDSGLIASASMDNSVRVWDIRSTCCNTPAD 549
Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/133 (22%), Positives = 58/133 (43%), Gaps = 12/133 (9%)
Query: 2 AKRGYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPV 61
A++G ++ F H V +S ++L + G+DQ++ LW + T L G + +
Sbjct: 455 AQQGNSVRLFTGHRGPVLSLSFSPNG-KYLASAGEDQRLKLWDLASGTLFKELRGHTDSI 513
Query: 62 DSVAFDSAEVLVLAGASTGVIKLWDLEES-----------KMVRTLTGHKSNCTAVEFHP 110
S+AF L+ + + +++WD+ + ++V TG SN +V+F
Sbjct: 514 TSLAFSPDSGLIASASMDNSVRVWDIRSTCCNTPADGSSGELVGVYTGQMSNVLSVQFMA 573
Query: 111 FGEFFASGCMDTN 123
+G N
Sbjct: 574 CNLLLVTGITQEN 586
>sp|Q4V7Z1|POC1B_XENLA POC1 centriolar protein homolog B OS=Xenopus laevis GN=poc1b PE=1
SV=1
Length = 468
Score = 114 bits (286), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 78/255 (30%), Positives = 112/255 (43%), Gaps = 11/255 (4%)
Query: 4 RGYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDS 63
R YK + H V C+ + + D+ V LWA L ++ V
Sbjct: 52 RAYK---YPGHKEAVTCVQFSPSG-HLVASSSKDRTVRLWAPNIKGESTVLKAHTAVVRC 107
Query: 64 VAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTN 123
V F S + + IK W+L + + +LT H + F P G AS D
Sbjct: 108 VNFSSDGQTFITASDDKSIKAWNLHRQRFLFSLTQHTNWVRCARFSPDGRLIASCSDDKT 167
Query: 124 LKIWDIRKKGCIHT---YKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDF 180
++IWD+ + CI+T YKGH+ N + F G V S G D+ VKVWD+ KLL +
Sbjct: 168 VRIWDLTNRLCINTFVDYKGHS---NYVDFNQMGTCVASAGADSTVKVWDIRMNKLLQHY 224
Query: 181 KFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRT 240
+ H + S+ FHP L T S+D T+K DL LI + V ++TF G
Sbjct: 225 QVHNAGVSSLSFHPSGNYLLTASSDGTLKILDLLEGRLIYTLHGHQGPVLSVTFSKSGDQ 284
Query: 241 LFSGFDDNLKVYSWE 255
SG D +V W+
Sbjct: 285 FASGATD-AQVLVWK 298
Score = 110 bits (274), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 64/244 (26%), Positives = 110/244 (45%), Gaps = 2/244 (0%)
Query: 9 QEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDS 68
+ F H V C+ + + L + D V +W + G V V F
Sbjct: 12 RHFKGHKDAVTCVDFSPDS-KQLASSSADACVMIWNFKPQSRAYKYPGHKEAVTCVQFSP 70
Query: 69 AEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWD 128
+ LV + + ++LW L H + V F G+ F + D ++K W+
Sbjct: 71 SGHLVASSSKDRTVRLWAPNIKGESTVLKAHTAVVRCVNFSSDGQTFITASDDKSIKAWN 130
Query: 129 IRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIR 188
+ ++ + + HT + RF+PDGR + S D V++WDLT ++ F ++GH
Sbjct: 131 LHRQRFLFSLTQHTNWVRCARFSPDGRLIASCSDDKTVRIWDLTNRLCINTFVDYKGHSN 190
Query: 189 SIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGFDD- 247
+DF+ + +A+ AD TVK WD+ +L+ + GV +++FHP G L + D
Sbjct: 191 YVDFNQMGTCVASAGADSTVKVWDIRMNKLLQHYQVHNAGVSSLSFHPSGNYLLTASSDG 250
Query: 248 NLKV 251
LK+
Sbjct: 251 TLKI 254
Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 87/210 (41%), Gaps = 1/210 (0%)
Query: 44 AIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNC 103
A+ P G V V F + + ++ + +W+ + GHK
Sbjct: 4 ALDDPALQRHFKGHKDAVTCVDFSPDSKQLASSSADACVMIWNFKPQSRAYKYPGHKEAV 63
Query: 104 TAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFD 163
T V+F P G AS D +++W KG K HT + + F+ DG+ ++ D
Sbjct: 64 TCVQFSPSGHLVASSSKDRTVRLWAPNIKGESTVLKAHTAVVRCVNFSSDGQTFITASDD 123
Query: 164 NVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTR 223
+K W+L + L H +R F P L+A+ S D+TV+ WDL I +
Sbjct: 124 KSIKAWNLHRQRFLFSLTQHTNWVRCARFSPDGRLIASCSDDKTVRIWDLTNRLCINTFV 183
Query: 224 PEVTGVHAITFHPDGRTLFS-GFDDNLKVY 252
+ + F+ G + S G D +KV+
Sbjct: 184 DYKGHSNYVDFNQMGTCVASAGADSTVKVW 213
>sp|Q5RD06|POC1B_PONAB POC1 centriolar protein homolog B OS=Pongo abelii GN=POC1B PE=2
SV=1
Length = 451
Score = 114 bits (284), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 71/251 (28%), Positives = 105/251 (41%), Gaps = 5/251 (1%)
Query: 4 RGYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDS 63
R Y+ +V H V + L + D+ V LW K ++PV S
Sbjct: 52 RAYR---YVGHKDVVTSVQFSPHG-NLLASASRDRTVRLWIPDKRGKFSEFKAHTAPVRS 107
Query: 64 VAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTN 123
V F + + + IK+W + + + +L H +F P G S D
Sbjct: 108 VDFSADGQFLATASEDKSIKVWSMYRQRFLYSLYRHTHWVRCAKFSPDGRLIVSCSEDKT 167
Query: 124 LKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFH 183
+KIWD K C++ + N + F P G + S G D VKVWD+ KLL ++ H
Sbjct: 168 IKIWDTTNKQCVNNFSDSVGFANFVDFNPSGTCIASAGSDQTVKVWDVRVNKLLQHYQVH 227
Query: 184 EGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFS 243
G + I FHP + L T S+D T+K DL LI + + V ++F G S
Sbjct: 228 SGGVNCISFHPSDNYLVTASSDGTLKILDLLEGRLIYTLQGHTGPVFTVSFSKGGELFAS 287
Query: 244 GFDDNLKVYSW 254
G D +V W
Sbjct: 288 GGADT-QVLLW 297
Score = 109 bits (273), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 61/209 (29%), Positives = 101/209 (48%), Gaps = 2/209 (0%)
Query: 3 KRGYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVD 62
KRG K EF AH+A V + +FL T +D+ + +W++ + L SL + V
Sbjct: 91 KRG-KFSEFKAHTAPVRSVDFSADG-QFLATASEDKSIKVWSMYRQRFLYSLYRHTHWVR 148
Query: 63 SVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDT 122
F L+++ + IK+WD + V + V+F+P G AS D
Sbjct: 149 CAKFSPDGRLIVSCSEDKTIKIWDTTNKQCVNNFSDSVGFANFVDFNPSGTCIASAGSDQ 208
Query: 123 NLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKF 182
+K+WD+R + Y+ H+ G+N I F P ++V+ D +K+ DL G+L++ +
Sbjct: 209 TVKVWDVRVNKLLQHYQVHSGGVNCISFHPSDNYLVTASSDGTLKILDLLEGRLIYTLQG 268
Query: 183 HEGHIRSIDFHPLEFLLATGSADRTVKFW 211
H G + ++ F L A+G AD V W
Sbjct: 269 HTGPVFTVSFSKGGELFASGGADTQVLLW 297
Score = 107 bits (266), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 62/242 (25%), Positives = 113/242 (46%), Gaps = 2/242 (0%)
Query: 11 FVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAE 70
F H A + + + + L T D + LW G V SV F
Sbjct: 14 FKGHKAAITSLDLSPNG-KQLATASWDTFLMLWNFKPHARAYRYVGHKDVVTSVQFSPHG 72
Query: 71 VLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIR 130
L+ + + ++LW ++ H + +V+F G+F A+ D ++K+W +
Sbjct: 73 NLLASASRDRTVRLWIPDKRGKFSEFKAHTAPVRSVDFSADGQFLATASEDKSIKVWSMY 132
Query: 131 KKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSI 190
++ +++ HT + +F+PDGR +VS D +K+WD T + +++F G +
Sbjct: 133 RQRFLYSLYRHTHWVRCAKFSPDGRLIVSCSEDKTIKIWDTTNKQCVNNFSDSVGFANFV 192
Query: 191 DFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHP-DGRTLFSGFDDNL 249
DF+P +A+ +D+TVK WD+ +L+ + GV+ I+FHP D + + D L
Sbjct: 193 DFNPSGTCIASAGSDQTVKVWDVRVNKLLQHYQVHSGGVNCISFHPSDNYLVTASSDGTL 252
Query: 250 KV 251
K+
Sbjct: 253 KI 254
Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/230 (25%), Positives = 100/230 (43%), Gaps = 28/230 (12%)
Query: 88 EESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINT 147
E+ + R GHK+ T+++ P G+ A+ DT L +W+ + + Y GH + +
Sbjct: 6 EDPVLERYFKGHKAAITSLDLSPNGKQLATASWDTFLMLWNFKPHARAYRYVGHKDVVTS 65
Query: 148 IRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRT 207
++F+P G + S D V++W +FK H +RS+DF LAT S D++
Sbjct: 66 VQFSPHGNLLASASRDRTVRLWIPDKRGKFSEFKAHTAPVRSVDFSADGQFLATASEDKS 125
Query: 208 VKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGFDDN-LKVYSWEPVICHDSVDMG 266
+K W + + S V F PDGR + S +D +K+
Sbjct: 126 IKVWSMYRQRFLYSLYRHTHWVRCAKFSPDGRLIVSCSEDKTIKI--------------- 170
Query: 267 WSTLGDLCINDGKLLGCSFYRNSVGIWVADVSHVEPYG--VGAPEPDQSI 314
W T C+N+ + +SVG A+ P G + + DQ++
Sbjct: 171 WDTTNKQCVNN--------FSDSVGF--ANFVDFNPSGTCIASAGSDQTV 210
>sp|Q12417|PRP46_YEAST Pre-mRNA-splicing factor PRP46 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=PRP46 PE=1 SV=1
Length = 451
Score = 114 bits (284), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 70/246 (28%), Positives = 120/246 (48%), Gaps = 4/246 (1%)
Query: 6 YKLQEFV-AHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSV 64
+KL + H V C++I + ITG +D + +W + +L G V V
Sbjct: 129 WKLSRVINGHLGWVRCVAIDPVDNEWFITGSNDTTMKVWDLATGKLKTTLAGHVMTVRDV 188
Query: 65 AFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNL 124
A + + + +K WDLE+++++R GH S V HP + A+ D+ +
Sbjct: 189 AVSDRHPYLFSVSEDKTVKCWDLEKNQIIRDYYGHLSGVRTVSIHPTLDLIATAGRDSVI 248
Query: 125 KIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHE 184
K+WD+R + + T GH IN ++ TP VVS D V++WD+ AGK + H+
Sbjct: 249 KLWDMRTRIPVITLVGHKGPINQVQCTPVDPQVVSSSTDATVRLWDVVAGKTMKVLTHHK 308
Query: 185 GHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTG-VHAITFHPDGRTLFS 243
+R+ HP EF +A+ D ++ W L L+ + E TG ++ ++ + D LF+
Sbjct: 309 RSVRATALHPKEFSVASACTD-DIRSWGLAEGSLLTNFESEKTGIINTLSINQDD-VLFA 366
Query: 244 GFDDNL 249
G D+ +
Sbjct: 367 GGDNGV 372
Score = 80.5 bits (197), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 86/198 (43%), Gaps = 7/198 (3%)
Query: 55 CGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEF 114
C PVD+ F + G++ +K+WDL K+ TL GH V +
Sbjct: 144 CVAIDPVDNEWF-------ITGSNDTTMKVWDLATGKLKTTLAGHVMTVRDVAVSDRHPY 196
Query: 115 FASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAG 174
S D +K WD+ K I Y GH G+ T+ P + + G D+V+K+WD+
Sbjct: 197 LFSVSEDKTVKCWDLEKNQIIRDYYGHLSGVRTVSIHPTLDLIATAGRDSVIKLWDMRTR 256
Query: 175 KLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITF 234
+ H+G I + P++ + + S D TV+ WD+ + + V A
Sbjct: 257 IPVITLVGHKGPINQVQCTPVDPQVVSSSTDATVRLWDVVAGKTMKVLTHHKRSVRATAL 316
Query: 235 HPDGRTLFSGFDDNLKVY 252
HP ++ S D+++ +
Sbjct: 317 HPKEFSVASACTDDIRSW 334
Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/213 (24%), Positives = 97/213 (45%), Gaps = 12/213 (5%)
Query: 8 LQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFD 67
++++ H + V +SI + T G D + LW + +++L G P++ V
Sbjct: 217 IRDYYGHLSGVRTVSI-HPTLDLIATAGRDSVIKLWDMRTRIPVITLVGHKGPINQVQCT 275
Query: 68 SAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIW 127
+ V++ ++ ++LWD+ K ++ LT HK + A HP AS C D +++ W
Sbjct: 276 PVDPQVVSSSTDATVRLWDVVAGKTMKVLTHHKRSVRATALHPKEFSVASACTD-DIRSW 334
Query: 128 DIRKKGCIHTYKGHTRGI-NTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHE-- 184
+ + + ++ GI NT+ D + +GG + V+ +D +G E
Sbjct: 335 GLAEGSLLTNFESEKTGIINTLSINQDDV-LFAGGDNGVLSFYDYKSGHKYQSLATREMV 393
Query: 185 GHI---RSI---DFHPLEFLLATGSADRTVKFW 211
G + RS+ F L TG AD+++K W
Sbjct: 394 GSLEGERSVLCSTFDKTGLRLITGEADKSIKIW 426
>sp|O75529|TAF5L_HUMAN TAF5-like RNA polymerase II p300/CBP-associated factor-associated
factor 65 kDa subunit 5L OS=Homo sapiens GN=TAF5L PE=1
SV=1
Length = 589
Score = 114 bits (284), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 55/225 (24%), Positives = 110/225 (48%), Gaps = 11/225 (4%)
Query: 31 LITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEES 90
L++ +D + W +G T + G + PV + + +G+ +LW + +
Sbjct: 357 LLSCSEDMSIRYWDLGSFTNTVLYQGHAYPVWDLDISPYSLYFASGSHDRTARLWSFDRT 416
Query: 91 KMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRF 150
+R GH ++ V+FHP + A+G D +++W ++ + + GH + ++ F
Sbjct: 417 YPLRIYAGHLADVDCVKFHPNSNYLATGSTDKTVRLWSAQQGNSVRLFTGHRGPVLSLAF 476
Query: 151 TPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKF 210
+P+G+++ S G D +K+WDL +G L + + H +I S+ F P L+A+ S D +V+
Sbjct: 477 SPNGKYLASAGEDQRLKLWDLASGTLYKELRGHTDNITSLTFSPDSGLIASASMDNSVRV 536
Query: 211 WDLE-----------TFELIGSTRPEVTGVHAITFHPDGRTLFSG 244
WD+ + EL+G +++ V ++ F L +G
Sbjct: 537 WDIRNTYCSAPADGSSSELVGVYTGQMSNVLSVQFMACNLLLVTG 581
Score = 97.4 bits (241), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 55/217 (25%), Positives = 95/217 (43%), Gaps = 1/217 (0%)
Query: 49 TALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEF 108
T + L G PV S F + +L+ + I+ WDL GH ++
Sbjct: 333 TEMKILRGHCGPVYSTRFLADSSGLLSCSEDMSIRYWDLGSFTNTVLYQGHAYPVWDLDI 392
Query: 109 HPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKV 168
P+ +FASG D ++W + + Y GH ++ ++F P+ ++ +G D V++
Sbjct: 393 SPYSLYFASGSHDRTARLWSFDRTYPLRIYAGHLADVDCVKFHPNSNYLATGSTDKTVRL 452
Query: 169 WDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTG 228
W G + F H G + S+ F P LA+ D+ +K WDL + L R
Sbjct: 453 WSAQQGNSVRLFTGHRGPVLSLAFSPNGKYLASAGEDQRLKLWDLASGTLYKELRGHTDN 512
Query: 229 VHAITFHPD-GRTLFSGFDDNLKVYSWEPVICHDSVD 264
+ ++TF PD G + D++++V+ C D
Sbjct: 513 ITSLTFSPDSGLIASASMDNSVRVWDIRNTYCSAPAD 549
Score = 97.1 bits (240), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 84/184 (45%), Gaps = 11/184 (5%)
Query: 30 FLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEE 89
+ +G D+ LW+ + L G + VD V F + G++ ++LW ++
Sbjct: 398 YFASGSHDRTARLWSFDRTYPLRIYAGHLADVDCVKFHPNSNYLATGSTDKTVRLWSAQQ 457
Query: 90 SKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIR 149
VR TGH+ ++ F P G++ AS D LK+WD+ +GHT I ++
Sbjct: 458 GNSVRLFTGHRGPVLSLAFSPNGKYLASAGEDQRLKLWDLASGTLYKELRGHTDNITSLT 517
Query: 150 FTPDGRWVVSGGFDNVVKVWDL-----------TAGKLLHDFKFHEGHIRSIDFHPLEFL 198
F+PD + S DN V+VWD+ ++ +L+ + ++ S+ F L
Sbjct: 518 FSPDSGLIASASMDNSVRVWDIRNTYCSAPADGSSSELVGVYTGQMSNVLSVQFMACNLL 577
Query: 199 LATG 202
L TG
Sbjct: 578 LVTG 581
Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/133 (21%), Positives = 57/133 (42%), Gaps = 12/133 (9%)
Query: 2 AKRGYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPV 61
A++G ++ F H V ++ ++L + G+DQ++ LW + T L G + +
Sbjct: 455 AQQGNSVRLFTGHRGPVLSLAFSPNG-KYLASAGEDQRLKLWDLASGTLYKELRGHTDNI 513
Query: 62 DSVAFDSAEVLVLAGASTGVIKLWDLE-----------ESKMVRTLTGHKSNCTAVEFHP 110
S+ F L+ + + +++WD+ S++V TG SN +V+F
Sbjct: 514 TSLTFSPDSGLIASASMDNSVRVWDIRNTYCSAPADGSSSELVGVYTGQMSNVLSVQFMA 573
Query: 111 FGEFFASGCMDTN 123
+G N
Sbjct: 574 CNLLLVTGITQEN 586
>sp|Q2HJH6|SNR40_BOVIN U5 small nuclear ribonucleoprotein 40 kDa protein OS=Bos taurus
GN=SNRNP40 PE=2 SV=1
Length = 358
Score = 113 bits (283), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 61/218 (27%), Positives = 113/218 (51%), Gaps = 9/218 (4%)
Query: 5 GYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSV 64
G +++ H++ VN ++ + + TG DD V LW I K A+ + + V +V
Sbjct: 142 GERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDIRKKAAIQTFQN-TYQVLAV 200
Query: 65 AFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNL 124
F+ +++G IK+WDL ++K+ T+ GH + T + G + S MD +
Sbjct: 201 TFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTGLSLSSEGSYLLSNAMDNTV 260
Query: 125 KIWDIR----KKGCIHTYKG--HTRGINTIR--FTPDGRWVVSGGFDNVVKVWDLTAGKL 176
++WD+R K+ C+ ++G H N +R ++PDG + +G D V VWD T+ ++
Sbjct: 261 RVWDVRPFAPKERCVRIFQGNVHNFEKNLLRCSWSPDGSKIAAGSADRFVYVWDTTSRRI 320
Query: 177 LHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLE 214
L+ H G I + FHP E ++ + S+D+ + +++
Sbjct: 321 LYKLPGHAGSINEVAFHPDEPIILSASSDKRLYMGEIQ 358
Score = 93.2 bits (230), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 67/261 (25%), Positives = 114/261 (43%), Gaps = 29/261 (11%)
Query: 13 AHSANVNCISIGKKACRF------LITGGDDQKVNLWAI-GKPTALMSLCGLSSPVDSVA 65
H V C C+F L + G D+ + LW + G +L G S V +
Sbjct: 65 GHEGEVYC-------CKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELH 117
Query: 66 FDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKS---NCTAVEFHPFGEFFASGCMDT 122
+++ ++ + ++ + +WD E + V+ L GH S +C P + +G D
Sbjct: 118 YNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGP--QLVCTGSDDG 175
Query: 123 NLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKF 182
+K+WDIRKK I T++ +T + + F ++SGG DN +KVWDL KL + +
Sbjct: 176 TVKLWDIRKKAAIQTFQ-NTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRG 234
Query: 183 HEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFE--------LIGSTRPEVTGVHAITF 234
H + + L + + D TV+ WD+ F G+ + ++
Sbjct: 235 HADSVTGLSLSSEGSYLLSNAMDNTVRVWDVRPFAPKERCVRIFQGNVHNFEKNLLRCSW 294
Query: 235 HPDGRTLFSGFDDNLKVYSWE 255
PDG + +G D VY W+
Sbjct: 295 SPDGSKIAAGSADRF-VYVWD 314
Score = 87.4 bits (215), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 59/231 (25%), Positives = 104/231 (45%), Gaps = 18/231 (7%)
Query: 30 FLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVA-FDSAEVLVLAGASTGVIKLWDLE 88
L + D+ V +W + L G +S V+S LV G+ G +KLWD+
Sbjct: 124 MLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDIR 183
Query: 89 ESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTI 148
+ ++T + AV F+ + SG +D ++K+WD+R+ +T +GH + +
Sbjct: 184 KKAAIQTFQ-NTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTGL 242
Query: 149 RFTPDGRWVVSGGFDNVVKVWD------------LTAGKLLHDFKFHEGHIRSIDFHPLE 196
+ +G +++S DN V+VWD + G +H+F E ++ + P
Sbjct: 243 SLSSEGSYLLSNAMDNTVRVWDVRPFAPKERCVRIFQGN-VHNF---EKNLLRCSWSPDG 298
Query: 197 FLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGFDD 247
+A GSADR V WD + ++ ++ + FHPD + S D
Sbjct: 299 SKIAAGSADRFVYVWDTTSRRILYKLPGHAGSINEVAFHPDEPIILSASSD 349
Score = 71.2 bits (173), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 76/166 (45%), Gaps = 10/166 (6%)
Query: 93 VRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGC--IHTYKGHTRGINTIRF 150
+ L+GH+ +FHP G AS D + +W++ C T KGH+ + + +
Sbjct: 60 IMLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGD-CDNYATLKGHSGAVMELHY 118
Query: 151 TPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEF---LLATGSADRT 207
DG + S D V VWD G+ + K H + S +P L+ TGS D T
Sbjct: 119 NTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSC--YPARRGPQLVCTGSDDGT 176
Query: 208 VKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFS-GFDDNLKVY 252
VK WD+ I T V A+TF+ + S G D+++KV+
Sbjct: 177 VKLWDIRKKAAI-QTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVW 221
>sp|D3ZW91|POC1B_RAT POC1 centriolar protein homolog B OS=Rattus norvegicus GN=Poc1b
PE=2 SV=1
Length = 477
Score = 113 bits (283), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 67/251 (26%), Positives = 110/251 (43%), Gaps = 5/251 (1%)
Query: 4 RGYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDS 63
R Y+ +V H V + + L + D+ V LW + + ++PV S
Sbjct: 52 RAYR---YVGHKDVVTSLQFSPQG-NLLASASRDKTVRLWVLDRKGKSSEFKAHTAPVRS 107
Query: 64 VAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTN 123
V F + ++ + IK+W + + + +L H +F P G S D
Sbjct: 108 VDFSADGQFLVTASEDKSIKVWSMYRQRFLYSLYRHTHWVRCAKFSPDGRLIVSCSEDKT 167
Query: 124 LKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFH 183
+KIWD K C++ + N + F+P+G + S G D+ V++WD+ +LL ++ H
Sbjct: 168 IKIWDTTSKQCVNNFSDSVGFANFVDFSPNGTCIASAGSDHAVRIWDIRMNRLLQHYQVH 227
Query: 184 EGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFS 243
+ + FHP L T S+D TVK DL LI + + V ++F DG S
Sbjct: 228 SCGVNCLSFHPSGNSLVTASSDGTVKILDLVEGRLIYTLQGHTGPVFTVSFSKDGELFTS 287
Query: 244 GFDDNLKVYSW 254
G D +V W
Sbjct: 288 GGADA-QVLVW 297
Score = 110 bits (275), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 57/237 (24%), Positives = 108/237 (45%), Gaps = 1/237 (0%)
Query: 11 FVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAE 70
F H A + C+ + T D + LW++ G V S+ F
Sbjct: 14 FKGHKAAITSADFSPN-CKQIATASWDTFLMLWSLKPHARAYRYVGHKDVVTSLQFSPQG 72
Query: 71 VLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIR 130
L+ + + ++LW L+ H + +V+F G+F + D ++K+W +
Sbjct: 73 NLLASASRDKTVRLWVLDRKGKSSEFKAHTAPVRSVDFSADGQFLVTASEDKSIKVWSMY 132
Query: 131 KKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSI 190
++ +++ HT + +F+PDGR +VS D +K+WD T+ + +++F G +
Sbjct: 133 RQRFLYSLYRHTHWVRCAKFSPDGRLIVSCSEDKTIKIWDTTSKQCVNNFSDSVGFANFV 192
Query: 191 DFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGFDD 247
DF P +A+ +D V+ WD+ L+ + GV+ ++FHP G +L + D
Sbjct: 193 DFSPNGTCIASAGSDHAVRIWDIRMNRLLQHYQVHSCGVNCLSFHPSGNSLVTASSD 249
Score = 94.4 bits (233), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 86/172 (50%), Gaps = 1/172 (0%)
Query: 82 IKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGH 141
+ LW L+ GHK T+++F P G AS D +++W + +KG +K H
Sbjct: 42 LMLWSLKPHARAYRYVGHKDVVTSLQFSPQGNLLASASRDKTVRLWVLDRKGKSSEFKAH 101
Query: 142 TRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLAT 201
T + ++ F+ DG+++V+ D +KVW + + L+ H +R F P L+ +
Sbjct: 102 TAPVRSVDFSADGQFLVTASEDKSIKVWSMYRQRFLYSLYRHTHWVRCAKFSPDGRLIVS 161
Query: 202 GSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFS-GFDDNLKVY 252
S D+T+K WD + + + + V + + F P+G + S G D ++++
Sbjct: 162 CSEDKTIKIWDTTSKQCVNNFSDSVGFANFVDFSPNGTCIASAGSDHAVRIW 213
Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/209 (26%), Positives = 96/209 (45%), Gaps = 4/209 (1%)
Query: 88 EESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINT 147
E+ + R GHK+ T+ +F P + A+ DT L +W ++ + Y GH + +
Sbjct: 6 EDPILERYFKGHKAAITSADFSPNCKQIATASWDTFLMLWSLKPHARAYRYVGHKDVVTS 65
Query: 148 IRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRT 207
++F+P G + S D V++W L +FK H +RS+DF L T S D++
Sbjct: 66 LQFSPQGNLLASASRDKTVRLWVLDRKGKSSEFKAHTAPVRSVDFSADGQFLVTASEDKS 125
Query: 208 VKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGFDDN-LKVYSWEPVICHD--SVD 264
+K W + + S V F PDGR + S +D +K++ C + S
Sbjct: 126 IKVWSMYRQRFLYSLYRHTHWVRCAKFSPDGRLIVSCSEDKTIKIWDTTSKQCVNNFSDS 185
Query: 265 MGWSTLGDLCINDGKLLGCSFYRNSVGIW 293
+G++ D N G + + ++V IW
Sbjct: 186 VGFANFVDFSPN-GTCIASAGSDHAVRIW 213
>sp|C3XVT5|LIS1_BRAFL Lissencephaly-1 homolog OS=Branchiostoma floridae
GN=BRAFLDRAFT_59218 PE=3 SV=1
Length = 406
Score = 113 bits (283), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 65/254 (25%), Positives = 119/254 (46%), Gaps = 21/254 (8%)
Query: 31 LITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEES 90
+++ +D + +W +L G + V V+FD L+ + ++ IKLWD +
Sbjct: 121 MVSASEDATIKIWDYETGDFERTLKGHTDAVQDVSFDQQGKLLASCSADMTIKLWDFQTF 180
Query: 91 KMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRF 150
+ ++T+ GH N ++V F P G+F S D +K+W++ C+ T+ GH + T+R
Sbjct: 181 ENIKTMHGHDHNVSSVHFMPNGDFLISASRDKTIKMWELATGYCVKTFTGHREWVRTVRV 240
Query: 151 TPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLE-------------- 196
DG + S D V+VW + + + + HE + I + P
Sbjct: 241 NQDGSLLASCSNDQTVRVWVVANKECKAELREHEHVVECIAWAPESCNGHVSEVMGAEKK 300
Query: 197 -----FLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGFDDN-LK 250
FLL +GS D+T+K WD+ T I + V + +HP G+ + S DD ++
Sbjct: 301 GRSGPFLL-SGSRDKTIKMWDISTGVCIMTLVGHDNWVRGVVWHPGGKYIISASDDKTIR 359
Query: 251 VYSWEPVICHDSVD 264
V+ ++ C +++
Sbjct: 360 VWDYKNKRCQKTLE 373
Score = 104 bits (260), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 92/193 (47%)
Query: 45 IGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCT 104
I +P A SL G SP+ V F ++++ + IK+WD E RTL GH
Sbjct: 93 IPRPPARYSLSGHRSPITRVLFHPVYSVMVSASEDATIKIWDYETGDFERTLKGHTDAVQ 152
Query: 105 AVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDN 164
V F G+ AS D +K+WD + I T GH ++++ F P+G +++S D
Sbjct: 153 DVSFDQQGKLLASCSADMTIKLWDFQTFENIKTMHGHDHNVSSVHFMPNGDFLISASRDK 212
Query: 165 VVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRP 224
+K+W+L G + F H +R++ + LLA+ S D+TV+ W + E R
Sbjct: 213 TIKMWELATGYCVKTFTGHREWVRTVRVNQDGSLLASCSNDQTVRVWVVANKECKAELRE 272
Query: 225 EVTGVHAITFHPD 237
V I + P+
Sbjct: 273 HEHVVECIAWAPE 285
Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/201 (23%), Positives = 86/201 (42%), Gaps = 18/201 (8%)
Query: 30 FLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEE 89
FLI+ D+ + +W + + + G V +V + L+ + ++ +++W +
Sbjct: 204 FLISASRDKTIKMWELATGYCVKTFTGHREWVRTVRVNQDGSLLASCSNDQTVRVWVVAN 263
Query: 90 SKMVRTLTGHKSNCTAVEFHP------------------FGEFFASGCMDTNLKIWDIRK 131
+ L H+ + + P G F SG D +K+WDI
Sbjct: 264 KECKAELREHEHVVECIAWAPESCNGHVSEVMGAEKKGRSGPFLLSGSRDKTIKMWDIST 323
Query: 132 KGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSID 191
CI T GH + + + P G++++S D ++VWD + + H+ SID
Sbjct: 324 GVCIMTLVGHDNWVRGVVWHPGGKYIISASDDKTIRVWDYKNKRCQKTLEAHQHFCTSID 383
Query: 192 FHPLEFLLATGSADRTVKFWD 212
FH + TGS D+TVK W+
Sbjct: 384 FHRSAPYVITGSVDQTVKVWE 404
Score = 82.8 bits (203), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 56/259 (21%), Positives = 107/259 (41%), Gaps = 20/259 (7%)
Query: 13 AHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVL 72
H+ V +S ++ + L + D + LW + ++ G V SV F
Sbjct: 146 GHTDAVQDVSFDQQG-KLLASCSADMTIKLWDFQTFENIKTMHGHDHNVSSVHFMPNGDF 204
Query: 73 VLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKK 132
+++ + IK+W+L V+T TGH+ V + G AS D +++W + K
Sbjct: 205 LISASRDKTIKMWELATGYCVKTFTGHREWVRTVRVNQDGSLLASCSNDQTVRVWVVANK 264
Query: 133 GCIHTYKGHTRGINTIRFTPD------------------GRWVVSGGFDNVVKVWDLTAG 174
C + H + I + P+ G +++SG D +K+WD++ G
Sbjct: 265 ECKAELREHEHVVECIAWAPESCNGHVSEVMGAEKKGRSGPFLLSGSRDKTIKMWDISTG 324
Query: 175 KLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITF 234
+ H+ +R + +HP + + S D+T++ WD + + +I F
Sbjct: 325 VCIMTLVGHDNWVRGVVWHPGGKYIISASDDKTIRVWDYKNKRCQKTLEAHQHFCTSIDF 384
Query: 235 HPDGRTLFSG-FDDNLKVY 252
H + +G D +KV+
Sbjct: 385 HRSAPYVITGSVDQTVKVW 403
Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 70/154 (45%)
Query: 95 TLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDG 154
+L+GH+S T V FHP S D +KIWD T KGHT + + F G
Sbjct: 101 SLSGHRSPITRVLFHPVYSVMVSASEDATIKIWDYETGDFERTLKGHTDAVQDVSFDQQG 160
Query: 155 RWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLE 214
+ + S D +K+WD + + H+ ++ S+ F P L + S D+T+K W+L
Sbjct: 161 KLLASCSADMTIKLWDFQTFENIKTMHGHDHNVSSVHFMPNGDFLISASRDKTIKMWELA 220
Query: 215 TFELIGSTRPEVTGVHAITFHPDGRTLFSGFDDN 248
T + + V + + DG L S +D
Sbjct: 221 TGYCVKTFTGHREWVRTVRVNQDGSLLASCSNDQ 254
Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/138 (23%), Positives = 63/138 (45%), Gaps = 17/138 (12%)
Query: 10 EFVAHSANVNCISIGKKACR-----------------FLITGGDDQKVNLWAIGKPTALM 52
E H V CI+ ++C FL++G D+ + +W I +M
Sbjct: 269 ELREHEHVVECIAWAPESCNGHVSEVMGAEKKGRSGPFLLSGSRDKTIKMWDISTGVCIM 328
Query: 53 SLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFG 112
+L G + V V + +++ + I++WD + + +TL H+ CT+++FH
Sbjct: 329 TLVGHDNWVRGVVWHPGGKYIISASDDKTIRVWDYKNKRCQKTLEAHQHFCTSIDFHRSA 388
Query: 113 EFFASGCMDTNLKIWDIR 130
+ +G +D +K+W+ R
Sbjct: 389 PYVITGSVDQTVKVWECR 406
Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 71/161 (44%), Gaps = 2/161 (1%)
Query: 136 HTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPL 195
++ GH I + F P +VS D +K+WD G K H ++ + F
Sbjct: 100 YSLSGHRSPITRVLFHPVYSVMVSASEDATIKIWDYETGDFERTLKGHTDAVQDVSFDQQ 159
Query: 196 EFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGF-DDNLKVYSW 254
LLA+ SAD T+K WD +TFE I + V ++ F P+G L S D +K++
Sbjct: 160 GKLLASCSADMTIKLWDFQTFENIKTMHGHDHNVSSVHFMPNGDFLISASRDKTIKMWEL 219
Query: 255 EPVICHDSVDMGWSTLGDLCIN-DGKLLGCSFYRNSVGIWV 294
C + + + +N DG LL +V +WV
Sbjct: 220 ATGYCVKTFTGHREWVRTVRVNQDGSLLASCSNDQTVRVWV 260
>sp|Q6CKE8|PRP46_KLULA Pre-mRNA-splicing factor PRP46 OS=Kluyveromyces lactis (strain ATCC
8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 /
WM37) GN=PRP46 PE=3 SV=1
Length = 434
Score = 113 bits (282), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 66/252 (26%), Positives = 118/252 (46%), Gaps = 3/252 (1%)
Query: 6 YKLQEFV-AHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSV 64
+KL + + H+ V C+ + + TG +D + +W + ++L G V +
Sbjct: 112 WKLSKVINGHTGWVRCVCVDPVDNEWFATGSNDTTIKIWDLAAGKLKITLIGHVMSVRDI 171
Query: 65 AFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNL 124
A + + + ++K WDLE + +R GH S V+ HP + A+ D +
Sbjct: 172 AISKRHPYMFSASEDKLVKCWDLERNTAIRDFHGHLSGVHTVDVHPSLDIIATAGRDAVV 231
Query: 125 KIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHE 184
++WDIR + I GH IN ++ P ++S D V++WD+ AGK H
Sbjct: 232 RLWDIRSRSEIMVLPGHKSPINKVKCLPVDPQIISCSGDATVRLWDIIAGKASKVLTHHS 291
Query: 185 GHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGV-HAITFHPDGRTLFS 243
+IR + HP EF A+ S + V+ W L +L+ + + + TG+ + ++ + D L
Sbjct: 292 RNIRDLTLHPAEFSFASVSTN-DVRSWKLPEGQLLTNFQSQNTGILNTVSINHDNVLLAG 350
Query: 244 GFDDNLKVYSWE 255
G D L Y ++
Sbjct: 351 GDDGTLCFYDYK 362
Score = 63.9 bits (154), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 52/218 (23%), Positives = 95/218 (43%), Gaps = 12/218 (5%)
Query: 3 KRGYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVD 62
+R +++F H + V+ + + + + T G D V LW I + +M L G SP++
Sbjct: 195 ERNTAIRDFHGHLSGVHTVDV-HPSLDIIATAGRDAVVRLWDIRSRSEIMVLPGHKSPIN 253
Query: 63 SVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDT 122
V + +++ + ++LWD+ K + LT H N + HP EF +
Sbjct: 254 KVKCLPVDPQIISCSGDATVRLWDIIAGKASKVLTHHSRNIRDLTLHP-AEFSFASVSTN 312
Query: 123 NLKIWDIRKKGCIHTYKGHTRGI-NTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFK 181
+++ W + + + ++ GI NT+ D +++GG D + +D G
Sbjct: 313 DVRSWKLPEGQLLTNFQSQNTGILNTVSINHDNV-LLAGGDDGTLCFYDYKTGHKYQSMM 371
Query: 182 FHE--GHI---RSI---DFHPLEFLLATGSADRTVKFW 211
E G + RSI F L TG D+++K W
Sbjct: 372 TTEVAGSLESERSILCSTFDVTGTRLITGEGDKSIKIW 409
>sp|Q9VZF4|FBXW7_DROME F-box/WD repeat-containing protein 7 OS=Drosophila melanogaster
GN=ago PE=1 SV=1
Length = 1326
Score = 113 bits (282), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 64/225 (28%), Positives = 114/225 (50%), Gaps = 15/225 (6%)
Query: 31 LITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEES 90
+++G DD + +W+ L +L G + V S ++++G++ +K+WD++
Sbjct: 1008 IVSGSDDNTLKVWSAVNGKCLRTLVGHTGGVWSSQMSGN--IIISGSTDRTLKVWDMDSG 1065
Query: 91 KMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRF 150
V TL GH S + H G SG D L++WDI + C+H GH + +++
Sbjct: 1066 ACVHTLQGHTSTVRCMHLH--GSKVVSGSRDATLRVWDIEQGSCLHVLVGHLAAVRCVQY 1123
Query: 151 TPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKF 210
DG+ +VSG +D +VK+W + LH + H + S+ F L + +GS D +++
Sbjct: 1124 --DGKLIVSGAYDYMVKIWHPERQECLHTLQGHTNRVYSLQFDGLHVV--SGSLDTSIRV 1179
Query: 211 WDLETFELIGSTRPEVTGVHAITFHPDGR--TLFSG-FDDNLKVY 252
WD+ET G+ + + G ++T + R L SG D +KV+
Sbjct: 1180 WDVET----GNCKHTLMGHQSLTSGMELRQNILVSGNADSTVKVW 1220
Score = 104 bits (259), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 64/219 (29%), Positives = 110/219 (50%), Gaps = 16/219 (7%)
Query: 5 GYKLQEFVAHSANVNCISI-GKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDS 63
G + H++ V C+ + G K +++G D + +W I + + L L G + V
Sbjct: 1065 GACVHTLQGHTSTVRCMHLHGSK----VVSGSRDATLRVWDIEQGSCLHVLVGHLAAVRC 1120
Query: 64 VAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTN 123
V +D L+++GA ++K+W E + + TL GH + +++F G SG +DT+
Sbjct: 1121 VQYDGK--LIVSGAYDYMVKIWHPERQECLHTLQGHTNRVYSLQFD--GLHVVSGSLDTS 1176
Query: 124 LKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFH 183
+++WD+ C HT GH + + + +VSG D+ VKVWD+T G+ L
Sbjct: 1177 IRVWDVETGNCKHTLMGHQSLTSGMELRQN--ILVSGNADSTVKVWDITTGQCLQTLSGP 1234
Query: 184 EGHIRSIDFHPLEF---LLATGSADRTVKFWDLETFELI 219
H ++ L+F + T S D TVK WD++T + I
Sbjct: 1235 NKHHSAVTC--LQFNSRFVVTSSDDGTVKLWDVKTGDFI 1271
Score = 97.1 bits (240), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 58/199 (29%), Positives = 96/199 (48%), Gaps = 10/199 (5%)
Query: 73 VLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKK 132
+++G+ +K+W K +RTL GH + + G SG D LK+WD+
Sbjct: 1008 IVSGSDDNTLKVWSAVNGKCLRTLVGHTGGVWSSQMS--GNIIISGSTDRTLKVWDMDSG 1065
Query: 133 GCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDF 192
C+HT +GHT + + G VVSG D ++VWD+ G LH H +R + +
Sbjct: 1066 ACVHTLQGHTSTVRCMHL--HGSKVVSGSRDATLRVWDIEQGSCLHVLVGHLAAVRCVQY 1123
Query: 193 HPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSG-FDDNLKV 251
L+ +G+ D VK W E E + + + V+++ F DG + SG D +++V
Sbjct: 1124 DGK--LIVSGAYDYMVKIWHPERQECLHTLQGHTNRVYSLQF--DGLHVVSGSLDTSIRV 1179
Query: 252 YSWEPVICHDSVDMGWSTL 270
+ E C ++ MG +L
Sbjct: 1180 WDVETGNCKHTL-MGHQSL 1197
Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 81/180 (45%), Gaps = 20/180 (11%)
Query: 120 MDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHD 179
++ N + +RK + + H I ++F+ G +VSG DN +KVW GK L
Sbjct: 975 IEMNWRSRPVRKPKVLKGHDDHV--ITCLQFS--GNRIVSGSDDNTLKVWSAVNGKCLRT 1030
Query: 180 FKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGR 239
H G + S ++ +GS DRT+K WD+++ + + + + V + H G
Sbjct: 1031 LVGHTGGVWSSQMSG--NIIISGSTDRTLKVWDMDSGACVHTLQGHTSTVRCMHLH--GS 1086
Query: 240 TLFSGF-DDNLKVYSWEPVICHDSVDMGWSTLGDL----CIN-DGKLLGCSFYRNSVGIW 293
+ SG D L+V+ E C + +G L C+ DGKL+ Y V IW
Sbjct: 1087 KVVSGSRDATLRVWDIEQGSCLHVL------VGHLAAVRCVQYDGKLIVSGAYDYMVKIW 1140
Score = 36.2 bits (82), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 5/70 (7%)
Query: 30 FLITGGDDQKVNLWAIGKPTALMSLCGLS---SPVDSVAFDSAEVLVLAGASTGVIKLWD 86
L++G D V +W I L +L G + S V + F+S V+ + G +KLWD
Sbjct: 1207 ILVSGNADSTVKVWDITTGQCLQTLSGPNKHHSAVTCLQFNSR--FVVTSSDDGTVKLWD 1264
Query: 87 LEESKMVRTL 96
++ +R L
Sbjct: 1265 VKTGDFIRNL 1274
>sp|Q96DI7|SNR40_HUMAN U5 small nuclear ribonucleoprotein 40 kDa protein OS=Homo sapiens
GN=SNRNP40 PE=1 SV=1
Length = 357
Score = 113 bits (282), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 61/218 (27%), Positives = 113/218 (51%), Gaps = 9/218 (4%)
Query: 5 GYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSV 64
G +++ H++ VN ++ + + TG DD V LW I K A+ + + V +V
Sbjct: 141 GERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDIRKKAAIQTFQN-TYQVLAV 199
Query: 65 AFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNL 124
F+ +++G IK+WDL ++K+ T+ GH + T + G + S MD +
Sbjct: 200 TFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTGLSLSSEGSYLLSNAMDNTV 259
Query: 125 KIWDIR----KKGCIHTYKG--HTRGINTIR--FTPDGRWVVSGGFDNVVKVWDLTAGKL 176
++WD+R K+ C+ ++G H N +R ++PDG + +G D V VWD T+ ++
Sbjct: 260 RVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSKIAAGSADRFVYVWDTTSRRI 319
Query: 177 LHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLE 214
L+ H G I + FHP E ++ + S+D+ + +++
Sbjct: 320 LYKLPGHAGSINEVAFHPDEPIIISASSDKRLYMGEIQ 357
Score = 93.2 bits (230), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 67/261 (25%), Positives = 114/261 (43%), Gaps = 29/261 (11%)
Query: 13 AHSANVNCISIGKKACRF------LITGGDDQKVNLWAI-GKPTALMSLCGLSSPVDSVA 65
H V C C+F L + G D+ + LW + G +L G S V +
Sbjct: 64 GHEGEVYC-------CKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELH 116
Query: 66 FDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKS---NCTAVEFHPFGEFFASGCMDT 122
+++ ++ + ++ + +WD E + V+ L GH S +C P + +G D
Sbjct: 117 YNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGP--QLVCTGSDDG 174
Query: 123 NLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKF 182
+K+WDIRKK I T++ +T + + F ++SGG DN +KVWDL KL + +
Sbjct: 175 TVKLWDIRKKAAIQTFQ-NTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRG 233
Query: 183 HEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFE--------LIGSTRPEVTGVHAITF 234
H + + L + + D TV+ WD+ F G+ + ++
Sbjct: 234 HADSVTGLSLSSEGSYLLSNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSW 293
Query: 235 HPDGRTLFSGFDDNLKVYSWE 255
PDG + +G D VY W+
Sbjct: 294 SPDGSKIAAGSADRF-VYVWD 313
Score = 86.3 bits (212), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/230 (25%), Positives = 104/230 (45%), Gaps = 16/230 (6%)
Query: 30 FLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVA-FDSAEVLVLAGASTGVIKLWDLE 88
L + D+ V +W + L G +S V+S LV G+ G +KLWD+
Sbjct: 123 MLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDIR 182
Query: 89 ESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTI 148
+ ++T + AV F+ + SG +D ++K+WD+R+ +T +GH + +
Sbjct: 183 KKAAIQTFQ-NTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTGL 241
Query: 149 RFTPDGRWVVSGGFDNVVKVWDL-------TAGKLL----HDFKFHEGHIRSIDFHPLEF 197
+ +G +++S DN V+VWD+ K+ H+F E ++ + P
Sbjct: 242 SLSSEGSYLLSNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNF---EKNLLRCSWSPDGS 298
Query: 198 LLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGFDD 247
+A GSADR V WD + ++ ++ + FHPD + S D
Sbjct: 299 KIAAGSADRFVYVWDTTSRRILYKLPGHAGSINEVAFHPDEPIIISASSD 348
Score = 71.2 bits (173), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 76/166 (45%), Gaps = 10/166 (6%)
Query: 93 VRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGC--IHTYKGHTRGINTIRF 150
+ L+GH+ +FHP G AS D + +W++ C T KGH+ + + +
Sbjct: 59 IMLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGD-CDNYATLKGHSGAVMELHY 117
Query: 151 TPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEF---LLATGSADRT 207
DG + S D V VWD G+ + K H + S +P L+ TGS D T
Sbjct: 118 NTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSC--YPARRGPQLVCTGSDDGT 175
Query: 208 VKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFS-GFDDNLKVY 252
VK WD+ I T V A+TF+ + S G D+++KV+
Sbjct: 176 VKLWDIRKKAAI-QTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVW 220
>sp|Q6PE01|SNR40_MOUSE U5 small nuclear ribonucleoprotein 40 kDa protein OS=Mus musculus
GN=Snrnp40 PE=2 SV=1
Length = 358
Score = 112 bits (280), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 61/218 (27%), Positives = 113/218 (51%), Gaps = 9/218 (4%)
Query: 5 GYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSV 64
G +++ H++ VN ++ + + TG DD V LW I K A+ + + V +V
Sbjct: 142 GERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDIRKKAAVQTFQN-TYQVLAV 200
Query: 65 AFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNL 124
F+ +++G IK+WDL ++K+ T+ GH + T + G + S MD +
Sbjct: 201 TFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTGLSLSSEGSYLLSNAMDNTV 260
Query: 125 KIWDIR----KKGCIHTYKG--HTRGINTIR--FTPDGRWVVSGGFDNVVKVWDLTAGKL 176
++WD+R K+ C+ ++G H N +R ++PDG + +G D V VWD T+ ++
Sbjct: 261 RVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSKIAAGSADRFVYVWDTTSRRV 320
Query: 177 LHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLE 214
L+ H G I + FHP E ++ + S+D+ + +++
Sbjct: 321 LYKLPGHAGSINEVAFHPDEPIILSASSDKRLYMGEIQ 358
Score = 92.0 bits (227), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/261 (25%), Positives = 114/261 (43%), Gaps = 29/261 (11%)
Query: 13 AHSANVNCISIGKKACRF------LITGGDDQKVNLWAI-GKPTALMSLCGLSSPVDSVA 65
H V C C+F L + G D+ + LW + G +L G S V +
Sbjct: 65 GHEGEVYC-------CKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELH 117
Query: 66 FDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKS---NCTAVEFHPFGEFFASGCMDT 122
+++ ++ + ++ + +WD E + V+ L GH S +C P + +G D
Sbjct: 118 YNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGP--QLVCTGSDDG 175
Query: 123 NLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKF 182
+K+WDIRKK + T++ +T + + F ++SGG DN +KVWDL KL + +
Sbjct: 176 TVKLWDIRKKAAVQTFQ-NTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRG 234
Query: 183 HEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFE--------LIGSTRPEVTGVHAITF 234
H + + L + + D TV+ WD+ F G+ + ++
Sbjct: 235 HADSVTGLSLSSEGSYLLSNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSW 294
Query: 235 HPDGRTLFSGFDDNLKVYSWE 255
PDG + +G D VY W+
Sbjct: 295 SPDGSKIAAGSADRF-VYVWD 314
Score = 87.0 bits (214), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 60/230 (26%), Positives = 104/230 (45%), Gaps = 16/230 (6%)
Query: 30 FLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVA-FDSAEVLVLAGASTGVIKLWDLE 88
L + D+ V +W + L G +S V+S LV G+ G +KLWD+
Sbjct: 124 MLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDIR 183
Query: 89 ESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTI 148
+ V+T + AV F+ + SG +D ++K+WD+R+ +T +GH + +
Sbjct: 184 KKAAVQTFQ-NTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTGL 242
Query: 149 RFTPDGRWVVSGGFDNVVKVWDL-------TAGKLL----HDFKFHEGHIRSIDFHPLEF 197
+ +G +++S DN V+VWD+ K+ H+F E ++ + P
Sbjct: 243 SLSSEGSYLLSNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNF---EKNLLRCSWSPDGS 299
Query: 198 LLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGFDD 247
+A GSADR V WD + ++ ++ + FHPD + S D
Sbjct: 300 KIAAGSADRFVYVWDTTSRRVLYKLPGHAGSINEVAFHPDEPIILSASSD 349
Score = 70.1 bits (170), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 76/166 (45%), Gaps = 10/166 (6%)
Query: 93 VRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGC--IHTYKGHTRGINTIRF 150
+ L+GH+ +FHP G AS D + +W++ C T KGH+ + + +
Sbjct: 60 IMLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGD-CDNYATLKGHSGAVMELHY 118
Query: 151 TPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEF---LLATGSADRT 207
DG + S D V VWD G+ + K H + S +P L+ TGS D T
Sbjct: 119 NTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSC--YPARRGPQLVCTGSDDGT 176
Query: 208 VKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFS-GFDDNLKVY 252
VK WD+ + T V A+TF+ + S G D+++KV+
Sbjct: 177 VKLWDIRKKAAV-QTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVW 221
>sp|Q28I85|POC1A_XENTR POC1 centriolar protein homolog A OS=Xenopus tropicalis GN=poc1a
PE=2 SV=1
Length = 441
Score = 112 bits (280), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 58/201 (28%), Positives = 97/201 (48%), Gaps = 1/201 (0%)
Query: 11 FVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAE 70
F AH+ V +S + L+T DD+ + +W + + L SL + V F
Sbjct: 98 FKAHTGTVRSVSFSGDG-QSLVTASDDKTIKVWTVHRQKFLFSLNQHINWVRCAKFSPDG 156
Query: 71 VLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIR 130
L+++ + IKLWD + + + H V+FHP G A+ D +K+WDIR
Sbjct: 157 RLIVSASDDKTIKLWDKTSRECIHSFCEHGGFVNFVDFHPSGTCIAAAATDNTVKVWDIR 216
Query: 131 KKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSI 190
I Y+ H+ +N++ F P G ++++ D+ +KV DL G+LL+ H+G + S+
Sbjct: 217 MNKLIQHYQVHSGVVNSLSFHPSGNYLITASNDSTLKVLDLLEGRLLYTLHGHQGPVTSV 276
Query: 191 DFHPLEFLLATGSADRTVKFW 211
F A+G +D V W
Sbjct: 277 KFSREGEFFASGGSDEQVMVW 297
Score = 107 bits (267), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 70/255 (27%), Positives = 111/255 (43%), Gaps = 11/255 (4%)
Query: 4 RGYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWA---IGKPTALMSLCGLSSP 60
R Y+ FV H + + + + D+ V LW G+ T + G
Sbjct: 52 RAYR---FVGHKDAILSVDFSPSG-HLIASASRDKTVRLWVPSVKGESTVFKAHTG---T 104
Query: 61 VDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCM 120
V SV+F ++ + IK+W + K + +L H + +F P G S
Sbjct: 105 VRSVSFSGDGQSLVTASDDKTIKVWTVHRQKFLFSLNQHINWVRCAKFSPDGRLIVSASD 164
Query: 121 DTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDF 180
D +K+WD + CIH++ H +N + F P G + + DN VKVWD+ KL+ +
Sbjct: 165 DKTIKLWDKTSRECIHSFCEHGGFVNFVDFHPSGTCIAAAATDNTVKVWDIRMNKLIQHY 224
Query: 181 KFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRT 240
+ H G + S+ FHP L T S D T+K DL L+ + V ++ F +G
Sbjct: 225 QVHSGVVNSLSFHPSGNYLITASNDSTLKVLDLLEGRLLYTLHGHQGPVTSVKFSREGEF 284
Query: 241 LFSGFDDNLKVYSWE 255
SG D +V W+
Sbjct: 285 FASGGSDE-QVMVWK 298
Score = 93.2 bits (230), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 56/206 (27%), Positives = 94/206 (45%), Gaps = 1/206 (0%)
Query: 48 PTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVE 107
P+ G V +V F+ + +G+ + +W+++ GHK +V+
Sbjct: 8 PSLERHFKGHRDTVTTVDFNPNTKQLASGSMDSCLMIWNMKPQMRAYRFVGHKDAILSVD 67
Query: 108 FHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVK 167
F P G AS D +++W KG +K HT + ++ F+ DG+ +V+ D +K
Sbjct: 68 FSPSGHLIASASRDKTVRLWVPSVKGESTVFKAHTGTVRSVSFSGDGQSLVTASDDKTIK 127
Query: 168 VWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVT 227
VW + K L H +R F P L+ + S D+T+K WD + E I S
Sbjct: 128 VWTVHRQKFLFSLNQHINWVRCAKFSPDGRLIVSASDDKTIKLWDKTSRECIHSFCEHGG 187
Query: 228 GVHAITFHPDGRTLFSGFDDN-LKVY 252
V+ + FHP G + + DN +KV+
Sbjct: 188 FVNFVDFHPSGTCIAAAATDNTVKVW 213
Score = 92.0 bits (227), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 79/160 (49%)
Query: 88 EESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINT 147
E+ + R GH+ T V+F+P + ASG MD+ L IW+++ + + + GH I +
Sbjct: 6 EDPSLERHFKGHRDTVTTVDFNPNTKQLASGSMDSCLMIWNMKPQMRAYRFVGHKDAILS 65
Query: 148 IRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRT 207
+ F+P G + S D V++W + FK H G +RS+ F L T S D+T
Sbjct: 66 VDFSPSGHLIASASRDKTVRLWVPSVKGESTVFKAHTGTVRSVSFSGDGQSLVTASDDKT 125
Query: 208 VKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGFDD 247
+K W + + + S + V F PDGR + S DD
Sbjct: 126 IKVWTVHRQKFLFSLNQHINWVRCAKFSPDGRLIVSASDD 165
>sp|Q8JZX3|POC1A_MOUSE POC1 centriolar protein homolog A OS=Mus musculus GN=Poc1a PE=2
SV=2
Length = 405
Score = 112 bits (279), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 71/263 (26%), Positives = 110/263 (41%), Gaps = 7/263 (2%)
Query: 4 RGYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDS 63
R Y+ F H V C++ L +G D+ V +W ++ V S
Sbjct: 53 RAYR---FTGHKDAVTCVNFSPSG-HLLASGSRDKTVRIWVPNVKGESTVFRAHTATVRS 108
Query: 64 VAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTN 123
V F S ++ + +K+W + + +LT H + +F P G S D
Sbjct: 109 VHFCSDGQSLVTASDDKTVKVWSTHRQRFLFSLTQHINWVRCAKFSPDGRLIVSASDDKT 168
Query: 124 LKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFH 183
+K+WD + CIH+Y H + + F P G + + G DN VKVWD +LL ++ H
Sbjct: 169 VKLWDKTSRECIHSYCEHGGFVTYVDFHPSGTCIAAAGMDNTVKVWDARTHRLLQHYQLH 228
Query: 184 EGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFS 243
+ ++ FHP L T S+D T+K DL L+ + + F G S
Sbjct: 229 SAAVNALSFHPSGNYLITASSDSTLKILDLMEGRLLYTLHGHQGPATTVAFSRTGEYFAS 288
Query: 244 GFDDNLKVYSWEPVICHDSVDMG 266
G D +V W+ D VD G
Sbjct: 289 GGSDE-QVMVWKSNF--DIVDYG 308
Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 59/198 (29%), Positives = 88/198 (44%), Gaps = 1/198 (0%)
Query: 56 GLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFF 115
G V V F + +G+ + +W ++ TGHK T V F P G
Sbjct: 17 GHRDAVTCVDFSLNTKHLASGSMDSTLMIWHMKPQSRAYRFTGHKDAVTCVNFSPSGHLL 76
Query: 116 ASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGK 175
ASG D ++IW KG ++ HT + ++ F DG+ +V+ D VKVW +
Sbjct: 77 ASGSRDKTVRIWVPNVKGESTVFRAHTATVRSVHFCSDGQSLVTASDDKTVKVWSTHRQR 136
Query: 176 LLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFH 235
L H +R F P L+ + S D+TVK WD + E I S V + FH
Sbjct: 137 FLFSLTQHINWVRCAKFSPDGRLIVSASDDKTVKLWDKTSRECIHSYCEHGGFVTYVDFH 196
Query: 236 PDGRTL-FSGFDDNLKVY 252
P G + +G D+ +KV+
Sbjct: 197 PSGTCIAAAGMDNTVKVW 214
Score = 87.8 bits (216), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 72/161 (44%)
Query: 88 EESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINT 147
E+ + R GH+ T V+F + ASG MD+ L IW ++ + + + GH +
Sbjct: 7 EDPSLERHFKGHRDAVTCVDFSLNTKHLASGSMDSTLMIWHMKPQSRAYRFTGHKDAVTC 66
Query: 148 IRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRT 207
+ F+P G + SG D V++W F+ H +RS+ F L T S D+T
Sbjct: 67 VNFSPSGHLLASGSRDKTVRIWVPNVKGESTVFRAHTATVRSVHFCSDGQSLVTASDDKT 126
Query: 208 VKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGFDDN 248
VK W + S + V F PDGR + S DD
Sbjct: 127 VKVWSTHRQRFLFSLTQHINWVRCAKFSPDGRLIVSASDDK 167
>sp|Q8NBT0|POC1A_HUMAN POC1 centriolar protein homolog A OS=Homo sapiens GN=POC1A PE=1
SV=2
Length = 407
Score = 112 bits (279), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 58/201 (28%), Positives = 96/201 (47%), Gaps = 1/201 (0%)
Query: 11 FVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAE 70
F AH+A V + F +T DD+ V +WA + L SL + V F
Sbjct: 99 FRAHTATVRSVHFCSDGQSF-VTASDDKTVKVWATHRQKFLFSLSQHINWVRCAKFSPDG 157
Query: 71 VLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIR 130
L+++ + +KLWD + V + H T V+FHP G A+ MD +K+WD+R
Sbjct: 158 RLIVSASDDKTVKLWDKSSRECVHSYCEHGGFVTYVDFHPSGTCIAAAGMDNTVKVWDVR 217
Query: 131 KKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSI 190
+ Y+ H+ +N + F P G ++++ D+ +K+ DL G+LL+ H+G ++
Sbjct: 218 THRLLQHYQLHSAAVNGLSFHPSGNYLITASSDSTLKILDLMEGRLLYTLHGHQGPATTV 277
Query: 191 DFHPLEFLLATGSADRTVKFW 211
F A+G +D V W
Sbjct: 278 AFSRTGEYFASGGSDEQVMVW 298
Score = 109 bits (273), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 70/263 (26%), Positives = 109/263 (41%), Gaps = 7/263 (2%)
Query: 4 RGYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDS 63
R Y+ F H V C++ L +G D+ V +W ++ V S
Sbjct: 53 RAYR---FTGHKDAVTCVNFSPSG-HLLASGSRDKTVRIWVPNVKGESTVFRAHTATVRS 108
Query: 64 VAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTN 123
V F S + + +K+W K + +L+ H + +F P G S D
Sbjct: 109 VHFCSDGQSFVTASDDKTVKVWATHRQKFLFSLSQHINWVRCAKFSPDGRLIVSASDDKT 168
Query: 124 LKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFH 183
+K+WD + C+H+Y H + + F P G + + G DN VKVWD+ +LL ++ H
Sbjct: 169 VKLWDKSSRECVHSYCEHGGFVTYVDFHPSGTCIAAAGMDNTVKVWDVRTHRLLQHYQLH 228
Query: 184 EGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFS 243
+ + FHP L T S+D T+K DL L+ + + F G S
Sbjct: 229 SAAVNGLSFHPSGNYLITASSDSTLKILDLMEGRLLYTLHGHQGPATTVAFSRTGEYFAS 288
Query: 244 GFDDNLKVYSWEPVICHDSVDMG 266
G D +V W+ D VD G
Sbjct: 289 GGSDE-QVMVWKSNF--DIVDHG 308
Score = 98.6 bits (244), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 59/198 (29%), Positives = 87/198 (43%), Gaps = 1/198 (0%)
Query: 56 GLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFF 115
G V V F + +G+ + +W ++ TGHK T V F P G
Sbjct: 17 GHRDAVTCVDFSINTKQLASGSMDSCLMVWHMKPQSRAYRFTGHKDAVTCVNFSPSGHLL 76
Query: 116 ASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGK 175
ASG D ++IW KG ++ HT + ++ F DG+ V+ D VKVW K
Sbjct: 77 ASGSRDKTVRIWVPNVKGESTVFRAHTATVRSVHFCSDGQSFVTASDDKTVKVWATHRQK 136
Query: 176 LLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFH 235
L H +R F P L+ + S D+TVK WD + E + S V + FH
Sbjct: 137 FLFSLSQHINWVRCAKFSPDGRLIVSASDDKTVKLWDKSSRECVHSYCEHGGFVTYVDFH 196
Query: 236 PDGRTL-FSGFDDNLKVY 252
P G + +G D+ +KV+
Sbjct: 197 PSGTCIAAAGMDNTVKVW 214
Score = 84.0 bits (206), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 72/160 (45%)
Query: 88 EESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINT 147
E+ + R GH+ T V+F + ASG MD+ L +W ++ + + + GH +
Sbjct: 7 EDPSLERHFKGHRDAVTCVDFSINTKQLASGSMDSCLMVWHMKPQSRAYRFTGHKDAVTC 66
Query: 148 IRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRT 207
+ F+P G + SG D V++W F+ H +RS+ F T S D+T
Sbjct: 67 VNFSPSGHLLASGSRDKTVRIWVPNVKGESTVFRAHTATVRSVHFCSDGQSFVTASDDKT 126
Query: 208 VKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGFDD 247
VK W + + S + V F PDGR + S DD
Sbjct: 127 VKVWATHRQKFLFSLSQHINWVRCAKFSPDGRLIVSASDD 166
>sp|Q8TC44|POC1B_HUMAN POC1 centriolar protein homolog B OS=Homo sapiens GN=POC1B PE=1
SV=1
Length = 478
Score = 112 bits (279), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 71/251 (28%), Positives = 104/251 (41%), Gaps = 5/251 (1%)
Query: 4 RGYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDS 63
R Y+ +V H V + L + D+ V LW K ++PV S
Sbjct: 52 RAYR---YVGHKDVVTSVQFSPHG-NLLASASRDRTVRLWIPDKRGKFSEFKAHTAPVRS 107
Query: 64 VAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTN 123
V F + + + IK+W + + + +L H +F P G S D
Sbjct: 108 VDFSADGQFLATASEDKSIKVWSMYRQRFLYSLYRHTHWVRCAKFSPDGRLIVSCSEDKT 167
Query: 124 LKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFH 183
+KIWD K C++ + N + F P G + S G D VKVWD+ KLL ++ H
Sbjct: 168 IKIWDTTNKQCVNNFSDSVGFANFVDFNPSGTCIASAGSDQTVKVWDVRVNKLLQHYQVH 227
Query: 184 EGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFS 243
G + I FHP L T S+D T+K DL LI + + V ++F G S
Sbjct: 228 SGGVNCISFHPSGNYLITASSDGTLKILDLLEGRLIYTLQGHTGPVFTVSFSKGGELFAS 287
Query: 244 GFDDNLKVYSW 254
G D +V W
Sbjct: 288 GGADT-QVLLW 297
Score = 112 bits (279), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 64/230 (27%), Positives = 110/230 (47%), Gaps = 4/230 (1%)
Query: 3 KRGYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVD 62
KRG K EF AH+A V + +FL T +D+ + +W++ + L SL + V
Sbjct: 91 KRG-KFSEFKAHTAPVRSVDFSADG-QFLATASEDKSIKVWSMYRQRFLYSLYRHTHWVR 148
Query: 63 SVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDT 122
F L+++ + IK+WD + V + V+F+P G AS D
Sbjct: 149 CAKFSPDGRLIVSCSEDKTIKIWDTTNKQCVNNFSDSVGFANFVDFNPSGTCIASAGSDQ 208
Query: 123 NLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKF 182
+K+WD+R + Y+ H+ G+N I F P G ++++ D +K+ DL G+L++ +
Sbjct: 209 TVKVWDVRVNKLLQHYQVHSGGVNCISFHPSGNYLITASSDGTLKILDLLEGRLIYTLQG 268
Query: 183 HEGHIRSIDFHPLEFLLATGSADRTVKFW--DLETFELIGSTRPEVTGVH 230
H G + ++ F L A+G AD V W + + G T+ + +H
Sbjct: 269 HTGPVFTVSFSKGGELFASGGADTQVLLWRTNFDELHCKGLTKRNLKRLH 318
Score = 109 bits (273), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 63/242 (26%), Positives = 113/242 (46%), Gaps = 2/242 (0%)
Query: 11 FVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAE 70
F H A + + + + L T D + LW G V SV F
Sbjct: 14 FKGHKAAITSLDLSPNG-KQLATASWDTFLMLWNFKPHARAYRYVGHKDVVTSVQFSPHG 72
Query: 71 VLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIR 130
L+ + + ++LW ++ H + +V+F G+F A+ D ++K+W +
Sbjct: 73 NLLASASRDRTVRLWIPDKRGKFSEFKAHTAPVRSVDFSADGQFLATASEDKSIKVWSMY 132
Query: 131 KKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSI 190
++ +++ HT + +F+PDGR +VS D +K+WD T + +++F G +
Sbjct: 133 RQRFLYSLYRHTHWVRCAKFSPDGRLIVSCSEDKTIKIWDTTNKQCVNNFSDSVGFANFV 192
Query: 191 DFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGFDD-NL 249
DF+P +A+ +D+TVK WD+ +L+ + GV+ I+FHP G L + D L
Sbjct: 193 DFNPSGTCIASAGSDQTVKVWDVRVNKLLQHYQVHSGGVNCISFHPSGNYLITASSDGTL 252
Query: 250 KV 251
K+
Sbjct: 253 KI 254
Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/230 (25%), Positives = 100/230 (43%), Gaps = 28/230 (12%)
Query: 88 EESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINT 147
E+ + R GHK+ T+++ P G+ A+ DT L +W+ + + Y GH + +
Sbjct: 6 EDPVLERYFKGHKAAITSLDLSPNGKQLATASWDTFLMLWNFKPHARAYRYVGHKDVVTS 65
Query: 148 IRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRT 207
++F+P G + S D V++W +FK H +RS+DF LAT S D++
Sbjct: 66 VQFSPHGNLLASASRDRTVRLWIPDKRGKFSEFKAHTAPVRSVDFSADGQFLATASEDKS 125
Query: 208 VKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGFDDN-LKVYSWEPVICHDSVDMG 266
+K W + + S V F PDGR + S +D +K+
Sbjct: 126 IKVWSMYRQRFLYSLYRHTHWVRCAKFSPDGRLIVSCSEDKTIKI--------------- 170
Query: 267 WSTLGDLCINDGKLLGCSFYRNSVGIWVADVSHVEPYG--VGAPEPDQSI 314
W T C+N+ + +SVG A+ P G + + DQ++
Sbjct: 171 WDTTNKQCVNN--------FSDSVGF--ANFVDFNPSGTCIASAGSDQTV 210
>sp|Q2TBP4|POC1A_BOVIN POC1 centriolar protein homolog A OS=Bos taurus GN=POC1A PE=2 SV=1
Length = 407
Score = 112 bits (279), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 70/263 (26%), Positives = 110/263 (41%), Gaps = 7/263 (2%)
Query: 4 RGYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDS 63
R Y+ F H V C++ L +G D+ V +W ++ V S
Sbjct: 53 RAYR---FAGHKDAVTCVNFSPSG-HLLASGSRDKTVRIWVPNVKGESTVFRAHTATVRS 108
Query: 64 VAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTN 123
V F S + + +K+W K + +L+ H + +F P G S D
Sbjct: 109 VHFCSDGQSFVTASDDKTVKVWSTHRQKFLFSLSQHINWVRCAKFSPDGRLIVSASDDKT 168
Query: 124 LKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFH 183
+K+WD + C+H+Y H + + F P G + + G DN VKVWD+ +LL ++ H
Sbjct: 169 VKLWDKTSRECVHSYCEHGGFVTYVDFHPSGTCIAAAGMDNTVKVWDVRTHRLLQHYQLH 228
Query: 184 EGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFS 243
+ ++ FHP L T S+D T+K DL L+ + + F G S
Sbjct: 229 SAAVNALSFHPSGNYLVTASSDSTLKILDLMEGRLLYTLHGHQGPATTVAFSRTGEYFAS 288
Query: 244 GFDDNLKVYSWEPVICHDSVDMG 266
G D +V W+ D VD G
Sbjct: 289 GGSDE-QVMVWKSNF--DIVDYG 308
Score = 111 bits (278), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 60/222 (27%), Positives = 102/222 (45%), Gaps = 1/222 (0%)
Query: 31 LITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEES 90
L +G D + +W + T G V V F + L+ +G+ +++W
Sbjct: 34 LASGSMDSCLMVWHMKPQTRAYRFAGHKDAVTCVNFSPSGHLLASGSRDKTVRIWVPNVK 93
Query: 91 KMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRF 150
H + +V F G+ F + D +K+W ++ + + H + +F
Sbjct: 94 GESTVFRAHTATVRSVHFCSDGQSFVTASDDKTVKVWSTHRQKFLFSLSQHINWVRCAKF 153
Query: 151 TPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKF 210
+PDGR +VS D VK+WD T+ + +H + H G + +DFHP +A D TVK
Sbjct: 154 SPDGRLIVSASDDKTVKLWDKTSRECVHSYCEHGGFVTYVDFHPSGTCIAAAGMDNTVKV 213
Query: 211 WDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGFDDN-LKV 251
WD+ T L+ + V+A++FHP G L + D+ LK+
Sbjct: 214 WDVRTHRLLQHYQLHSAAVNALSFHPSGNYLVTASSDSTLKI 255
Score = 98.6 bits (244), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 59/198 (29%), Positives = 87/198 (43%), Gaps = 1/198 (0%)
Query: 56 GLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFF 115
G V SV F + +G+ + +W ++ GHK T V F P G
Sbjct: 17 GHRDAVTSVDFSLNTKQLASGSMDSCLMVWHMKPQTRAYRFAGHKDAVTCVNFSPSGHLL 76
Query: 116 ASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGK 175
ASG D ++IW KG ++ HT + ++ F DG+ V+ D VKVW K
Sbjct: 77 ASGSRDKTVRIWVPNVKGESTVFRAHTATVRSVHFCSDGQSFVTASDDKTVKVWSTHRQK 136
Query: 176 LLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFH 235
L H +R F P L+ + S D+TVK WD + E + S V + FH
Sbjct: 137 FLFSLSQHINWVRCAKFSPDGRLIVSASDDKTVKLWDKTSRECVHSYCEHGGFVTYVDFH 196
Query: 236 PDGRTL-FSGFDDNLKVY 252
P G + +G D+ +KV+
Sbjct: 197 PSGTCIAAAGMDNTVKVW 214
Score = 84.0 bits (206), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 73/161 (45%)
Query: 88 EESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINT 147
E+ + R GH+ T+V+F + ASG MD+ L +W ++ + + + GH +
Sbjct: 7 EDPSLERHFKGHRDAVTSVDFSLNTKQLASGSMDSCLMVWHMKPQTRAYRFAGHKDAVTC 66
Query: 148 IRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRT 207
+ F+P G + SG D V++W F+ H +RS+ F T S D+T
Sbjct: 67 VNFSPSGHLLASGSRDKTVRIWVPNVKGESTVFRAHTATVRSVHFCSDGQSFVTASDDKT 126
Query: 208 VKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGFDDN 248
VK W + + S + V F PDGR + S DD
Sbjct: 127 VKVWSTHRQKFLFSLSQHINWVRCAKFSPDGRLIVSASDDK 167
>sp|Q5RF51|SNR40_PONAB U5 small nuclear ribonucleoprotein 40 kDa protein OS=Pongo abelii
GN=SNRNP40 PE=2 SV=1
Length = 357
Score = 111 bits (278), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 61/218 (27%), Positives = 113/218 (51%), Gaps = 9/218 (4%)
Query: 5 GYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSV 64
G +++ H++ VN ++ + + TG DD V LW I K A+ + + V +V
Sbjct: 141 GERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDIRKKAAIQTFQN-TYQVLAV 199
Query: 65 AFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNL 124
F+ +++G IK+WDL ++K+ T+ GH + T + G + S MD +
Sbjct: 200 TFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTGLSLSSEGSYLLSNAMDNTV 259
Query: 125 KIWDIR----KKGCIHTYKG--HTRGINTIR--FTPDGRWVVSGGFDNVVKVWDLTAGKL 176
++WD+R K+ C+ ++G H N +R ++PDG + +G D V VWD T+ ++
Sbjct: 260 RVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSKIAAGSADRSVCVWDTTSRRI 319
Query: 177 LHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLE 214
L+ H G I + FHP E ++ + S+D+ + +++
Sbjct: 320 LYKLPGHAGSINEVAFHPDEPIIISASSDKRLYMGEIQ 357
Score = 91.7 bits (226), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 70/260 (26%), Positives = 112/260 (43%), Gaps = 44/260 (16%)
Query: 13 AHSANVNCISIGKKACRF------LITGGDDQKVNLWAI-GKPTALMSLCGLSSPVDSVA 65
H V C C+F L + G D+ + LW + G +L G S V +
Sbjct: 64 GHEGEVYC-------CKFHPNGSTLASAGFDRLILLWNVYGDCGNYATLKGYSGAVMELH 116
Query: 66 FDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKS---NCTAVEFHPFGEFFASGCMDT 122
+++ ++ + ++ + +WD E + V+ L GH S +C P + +G D
Sbjct: 117 YNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGP--QLVCTGSDDG 174
Query: 123 NLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKF 182
+K+WDIRKK I T++ +T + + F ++SGG DN +KVWDL KL + +
Sbjct: 175 TVKLWDIRKKAAIQTFQ-NTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRG 233
Query: 183 HEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRT-- 240
H + + L + + D TV+ WD+ RP F P R
Sbjct: 234 HADSVTGLSLSSEGSYLLSNAMDNTVRVWDV---------RP---------FAPKERCVK 275
Query: 241 LFSG----FDDNLKVYSWEP 256
+F G F+ NL SW P
Sbjct: 276 IFQGNVHNFEKNLLRCSWSP 295
Score = 87.0 bits (214), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 59/230 (25%), Positives = 105/230 (45%), Gaps = 16/230 (6%)
Query: 30 FLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVA-FDSAEVLVLAGASTGVIKLWDLE 88
L + D+ V +W + L G +S V+S LV G+ G +KLWD+
Sbjct: 123 MLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDIR 182
Query: 89 ESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTI 148
+ ++T + AV F+ + SG +D ++K+WD+R+ +T +GH + +
Sbjct: 183 KKAAIQTFQ-NTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTGL 241
Query: 149 RFTPDGRWVVSGGFDNVVKVWDL-------TAGKLL----HDFKFHEGHIRSIDFHPLEF 197
+ +G +++S DN V+VWD+ K+ H+F E ++ + P
Sbjct: 242 SLSSEGSYLLSNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNF---EKNLLRCSWSPDGS 298
Query: 198 LLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGFDD 247
+A GSADR+V WD + ++ ++ + FHPD + S D
Sbjct: 299 KIAAGSADRSVCVWDTTSRRILYKLPGHAGSINEVAFHPDEPIIISASSD 348
Score = 71.6 bits (174), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 76/165 (46%), Gaps = 8/165 (4%)
Query: 93 VRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKK-GCIHTYKGHTRGINTIRFT 151
+ L+GH+ +FHP G AS D + +W++ G T KG++ + + +
Sbjct: 59 IMLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCGNYATLKGYSGAVMELHYN 118
Query: 152 PDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEF---LLATGSADRTV 208
DG + S D V VWD G+ + K H + S +P L+ TGS D TV
Sbjct: 119 TDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSC--YPARRGPQLVCTGSDDGTV 176
Query: 209 KFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFS-GFDDNLKVY 252
K WD+ I T V A+TF+ + S G D+++KV+
Sbjct: 177 KLWDIRKKAAI-QTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVW 220
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.130 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 398,983,628
Number of Sequences: 539616
Number of extensions: 17235889
Number of successful extensions: 58280
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1197
Number of HSP's successfully gapped in prelim test: 1291
Number of HSP's that attempted gapping in prelim test: 37423
Number of HSP's gapped (non-prelim): 11502
length of query: 1074
length of database: 191,569,459
effective HSP length: 128
effective length of query: 946
effective length of database: 122,498,611
effective search space: 115883686006
effective search space used: 115883686006
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 67 (30.4 bits)